HHsearch alignment for GI: 254780757 and conserved domain: cd00673
>cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is responsible for the attachment of alanine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its predicted structure and the presence of three characteristic sequence motifs.
Probab=96.65 E-value=0.013 Score=40.07 Aligned_cols=164 Identities=20% Similarity=0.160 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHCCCEEEECCCCC---------CCCCCCCHHH-HHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEE
Q ss_conf 999999999986695896116754---------3332248578-987448344016764155788765546677500114
Q gi|254780757|r 15 NIILTLTQYWAQQGCTILQPYDME---------VGAGTFHPST-TLRALGPLSWKAAYVQPSRRPLDGRYAENPNRLQHY 84 (307)
Q Consensus 15 ~ii~~L~~fW~~~GC~i~qpyd~e---------~GAgT~hp~T-~lr~lg~~pw~~aYvqPsrRP~DgRYGeNPNRlq~y 84 (307)
T Consensus 3 eiR~~Fl~fF~~~gH~~vpssslvp~~DptllFtnAGM~~Fkp~flG~~~p~~~r~~~~QkCiR~~di~nvG~t~--rH~ 80 (232)
T cd00673 3 EIRETFLSFFEKKGHTRVPSSPVVPRDDPTLLFTNAGMNQFKPIFLGEVPPPANRLVNSQKCIRAGDIDNVGKTG--RHH 80 (232)
T ss_pred HHHHHHHHHHHHCCCEECCCCCCCCCCCCCEEEEECCHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCC--CCC
T ss_conf 899999999987898882787722389995014411468889986778899987510000123657832467777--640
Q ss_pred EEEEEEECCCCHH--------------------------------HHHHHHHHHHHCCCCCCCCCEEEE-ECCCCCC-HH
Q ss_conf 4445575798335--------------------------------899999999981999621717988-3288870-01
Q gi|254780757|r 85 YQFQVIIKPNPLN--------------------------------LQNLYIESLKAVGIDPLIHDVRFV-EDNWESP-TL 130 (307)
Q Consensus 85 ~QfQVilKPsp~n--------------------------------iq~lYl~SL~~iGid~~~hDIrFv-eDnWEsP-tL 130 (307)
T Consensus 81 TfFEMLGnfSFGdYfK~eaI~~awe~lt~~~~l~~~rlyvTv~~~Dde~~~~~~~~~gi-~~~~i~~~~~~dNfW~~G~~ 159 (232)
T cd00673 81 TFFEMLGNFSFGDYFKEEAIAFAWELLTEVLGLPKDRLYVSVFEGDDEEEAIWWWKIGL-PGIRIERIGFKDNFWEMGGN 159 (232)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHCCC-CHHHEEECCCCCCCCCCCCC
T ss_conf 23330444203145899999999998751237685624266746977999999974199-88983466776667869998
Q ss_pred HHCCCCEEEEECC-----------------EEEHHH--HHH-HHHCC--CCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 1012321768878-----------------741477--789-98668--257751456787899999998699
Q gi|254780757|r 131 GAWGLGWECWCDG-----------------MEISQF--TYF-QQVCG--IECSPISGEITYGLERLAMYVQNV 181 (307)
Q Consensus 131 GAwGlGWEvwldG-----------------MEItQF--TYF-QQvGG--i~c~pv~~EiTYGLERiaMylQ~v 181 (307)
T Consensus 160 GPcGPcsEI~yd~g~~~~~~~~~~~~~~r~lEiwNlVFmqy~r~~dg~l~~Lp~k~IDTGmGlERl~~vlQgv 232 (232)
T cd00673 160 GPCGPCSEIFYDRGEERDAASLPNEDDDRYLEIWNLVFMQYNRDADGTYRPLPKKIVDTGMGLERLVWVLQGV 232 (232)
T ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCEECCCCCHHHHHHHHCCC
T ss_conf 7998767789757777788657788899889986731375200699976508998141683799999998379