HHsearch alignment of GI: 254780757 and MMDB domain: 1c0a_A_129-271_422-557
>1c0a_A (A:129-271,A:422-557) Aspartyl tRNA synthetase; protein-RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli}
Probab=97.25 E-value=0.0038 Score=43.54 Aligned_cols=175 Identities=16% Similarity=0.136 Sum_probs=110.5
Q ss_pred CCHHHHHHHHHHHHHHCCCEEEECCCCCCCCC-----C-------------C--CHHH-HHHHCCCCCCEEEEECCCCCC
Q ss_conf 77999999999999866958961167543332-----2-------------4--8578-987448344016764155788
Q gi|254780757|r 11 LSFQNIILTLTQYWAQQGCTILQPYDMEVGAG-----T-------------F--HPST-TLRALGPLSWKAAYVQPSRRP 69 (307)
Q Consensus 11 ~~fq~ii~~L~~fW~~~GC~i~qpyd~e~GAg-----T-------------~--hp~T-~lr~lg~~pw~~aYvqPsrRP 69 (307)
+....|+.++.+|-..+|..-+.+--++.-.| . . +|.. ..|++-..|-++-|+.+|.|.
T Consensus 11 ~~r~~i~~~~r~~f~~~gf~ev~tP~l~~~~~~~~~~~~~~~~~~~g~~~~Lr~~~t~~~~~~~a~~~~r~~~i~~vfR~ 90 (279)
T 1c0a_A 11 KTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRD 90 (279)
T ss_dssp HHHHHHHHHHHHHHHHTTCEECCCCSSBCCCSSSSCCCEEECSSSTTCEEECCSCSHHHHHHHHHTTCCEEEEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCCCHHCCCCCHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 99999999999999878988998986677787656676553554877410168784788998875066604885410033
Q ss_pred CCCCCCCCCCCCCEEEEEEE--EECCCCHHHH---HHHHHHHHHCCCCCCC------------------------CCEEE
Q ss_conf 76554667750011444455--7579833589---9999999981999621------------------------71798
Q gi|254780757|r 70 LDGRYAENPNRLQHYYQFQV--IIKPNPLNLQ---NLYIESLKAVGIDPLI------------------------HDVRF 120 (307)
Q Consensus 70 ~DgRYGeNPNRlq~y~QfQV--ilKPsp~niq---~lYl~SL~~iGid~~~------------------------hDIrF 120 (307)
.... +.|+--++|.-+ +--++++-.. ++--..++++|+.... +++|+
T Consensus 91 e~~~----~~h~~EF~q~~~e~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~ea~~~l~~~~~~~~~~~e~~~ 166 (279)
T 1c0a_A 91 EDLR----ADRQPEFTQIDVETSFMTAPQVREVMEALVRHLWLEVKGVDLGDFPVMTESKWAPLWVIDFPMFEDDGEGGL 166 (279)
T ss_dssp CCCB----TTBCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHSCCCCSCCEEESSCCCEEEEECCBSEEECSSSCE
T ss_pred CCCC----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCEEEEECCCCCCCCCCCC
T ss_conf 2247----766742102225555566677899985421566788618756644044245646348994254454443352
Q ss_pred EECC-------------CCCCHHHHC-------CCCEEEEECCEEEHHHHHHHHHC---CCC-----------------C
Q ss_conf 8328-------------887001101-------23217688787414777899866---825-----------------7
Q gi|254780757|r 121 VEDN-------------WESPTLGAW-------GLGWECWCDGMEISQFTYFQQVC---GIE-----------------C 160 (307)
Q Consensus 121 veDn-------------WEsPtLGAw-------GlGWEvwldGMEItQFTYFQQvG---Gi~-----------------c 160 (307)
++-- |.+++.... .-|+|+...|.++.-..-+++.. |++ -
T Consensus 167 ~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~d~~~~g~e~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 246 (279)
T 1c0a_A 167 TAMHHPFTSPKDMTAAELKAAPENAVANAYDMVINGYEVGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYG 246 (279)
T ss_dssp EESSCTTBCBSSCCHHHHHHSCTTCBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTT
T ss_pred CCCCCCCCCCCHHHHHHHCCCCCCCEEEEEECCCCCEEECCCHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 22100223441120787416998730688960459888634211107999999999985998568655699999997669
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 75145678789999999869982113320
Q gi|254780757|r 161 SPISGEITYGLERLAMYVQNVNSVYDIVF 189 (307)
Q Consensus 161 ~pv~~EiTYGLERiaMylQ~vdnvyDl~w 189 (307)
.|.++-.--|||||+|.+|+++||+|+..
T Consensus 247 ~~p~~g~GlGlERl~mll~g~~~Irev~l 275 (279)
T 1c0a_A 247 TPPHAGLAFGLDRLTMLLTGTDNIRDVIA 275 (279)
T ss_dssp CCCEEEEEEEHHHHHHHHHTCSCGGGGSS
T ss_pred CCCCCEEEEHHHHHHHHHCCCCCHHEEEC
T ss_conf 99976365489999999809996770841