HHsearch alignment of GI: 254780757 and MMDB domain: 1yfs_A_1-237
>1yfs_A (A:1-237) Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus}
Probab=96.93 E-value=0.0025 Score=44.81 Aligned_cols=173 Identities=21% Similarity=0.199 Sum_probs=106.5
Q ss_pred CCCHHHHHHHHHHHHHHCCCEEEECCCCC---------CCCCCCCHHH-HHHHCCCCCCEEEEECCCCCCC----CC-CC
Q ss_conf 77799999999999986695896116754---------3332248578-9874483440167641557887----65-54
Q gi|254780757|r 10 DLSFQNIILTLTQYWAQQGCTILQPYDME---------VGAGTFHPST-TLRALGPLSWKAAYVQPSRRPL----DG-RY 74 (307)
Q Consensus 10 ~~~fq~ii~~L~~fW~~~GC~i~qpyd~e---------~GAgT~hp~T-~lr~lg~~pw~~aYvqPsrRP~----Dg-RY 74 (307)
+|+.++|..+-.+|..++|+.++.++.+= +.||--.-.- |+...-|...+++=+|+|-|-. |= .-
T Consensus 2 ~~t~~eiR~~Fl~FF~~kgH~~v~s~~lvp~~d~tllFtnAGM~~Fkp~flg~~~~~~~r~~~~QkCiR~~gkhnDle~V 81 (237)
T 1yfs_A 2 SLSAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRATSCQKCLRVSGKHNDLEQV 81 (237)
T ss_dssp CCCHHHHHHHHHHHHHTTTCEECCCCCSSCTTCTTCSSCCSTTSTTHHHHHTSSCCSCSEEEEEEEEECEETTEECGGGB
T ss_pred CCCHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 98899999999999986798885887867899997400103400162344488899888754555352147876536650
Q ss_pred CCCCCCCCEEEEEEEEECCCCH-----HHHHH-HHHHHHHCCCCCCC-------------------------CCEEEE-E
Q ss_conf 6677500114444557579833-----58999-99999981999621-------------------------717988-3
Q gi|254780757|r 75 AENPNRLQHYYQFQVIIKPNPL-----NLQNL-YIESLKAVGIDPLI-------------------------HDVRFV-E 122 (307)
Q Consensus 75 GeNPNRlq~y~QfQVilKPsp~-----niq~l-Yl~SL~~iGid~~~-------------------------hDIrFv-e 122 (307)
|. --.||.=|+.+=-=|-. ...+. +-=..+.+||++.. |=+|+- +
T Consensus 82 G~---t~rH~TfFEMlGnfSFgdYfK~eai~~awe~Lt~~l~l~~~rl~vTv~~~D~E~~~~w~~~~Gi~~~~I~~~~~~ 158 (237)
T 1yfs_A 82 GY---TSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPKEKLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGEE 158 (237)
T ss_dssp TT---BSSCCSEEEEEEEEESSSCCHHHHHHHHHHHHHHTSCCCGGGEEEEEETTCHHHHHHHHTTTCCCGGGEEEECHH
T ss_pred CC---CCCCCCCEEECCCEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEECCCC
T ss_conf 88---886531023536101289754678999999988875047751799854771777777777638660005752687
Q ss_pred CC-CCCCHHHHCCCCEEEEECC----------EEEHHHHHHHH---HCC-CC-CCCCHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 28-8870011012321768878----------74147778998---668-25-77514567878999999986998211
Q gi|254780757|r 123 DN-WESPTLGAWGLGWECWCDG----------MEISQFTYFQQ---VCG-IE-CSPISGEITYGLERLAMYVQNVNSVY 185 (307)
Q Consensus 123 Dn-WEsPtLGAwGlGWEvwldG----------MEItQFTYFQQ---vGG-i~-c~pv~~EiTYGLERiaMylQ~vdnvy 185 (307)
|| |+.--.|.-|--=|+-.|+ +||--.-+.|- -.| +. +.--.+.--+||||||+.+|++.|+|
T Consensus 159 dNfW~~G~~GpcGPcsEI~yd~g~~~~~~~r~lEiwNlVFmq~~r~~dg~l~pL~~k~IDTGmGlERl~~ilQg~~s~y 237 (237)
T 1yfs_A 159 DNFWQMGDVGPCGPSSEIYVDRGEEYEGDERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGKNSNF 237 (237)
T ss_dssp HHEEESSSSEEEEEEEEEEEECCTTSCHHHHEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEHHHHHHHHTTCSSGG
T ss_pred CCEEECCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEHEEEEEECCCCCEEECCCCEEEECCHHHHHHHHHCCCCCCC
T ss_conf 8656279988988760378970355478864555220010231126999775678760543413999999983888654