HHsearch results for GI: 254780757 and protein with PDBid: 1j5w_A

>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1
Probab=100.00  E-value=0  Score=1221.61  Aligned_cols=290  Identities=57%  Similarity=1.021  Sum_probs=284.0

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCE
Q ss_conf             43356777799999999999986695896116754333224857898744834401676415578876554667750011
Q gi|254780757|r    4 IHNKKNDLSFQNIILTLTQYWAQQGCTILQPYDMEVGAGTFHPSTTLRALGPLSWKAAYVQPSRRPLDGRYAENPNRLQH   83 (307)
Q Consensus         4 ~~~~~~~~~fq~ii~~L~~fW~~~GC~i~qpyd~e~GAgT~hp~T~lr~lg~~pw~~aYvqPsrRP~DgRYGeNPNRlq~   83 (307)
                      +....+.|+||+||++||+||+++||+|+||||+|||||||||+|||||||||||++|||||||||+|||||+|||||||
T Consensus         6 ~~~~~~~m~fq~~i~~L~~fW~~~GC~i~qpyd~evGAgT~~P~T~lr~lgp~pw~~aYvqPsrRP~DgRYGeNPNRLq~   85 (298)
T 1j5w_A            6 IHHHHHHMYLQDVIMKLNDFWASKGCLLEQPYDMEVGAGTFHPATFFGSLRKGPWKVAYVQPSRRPTDGRYGENPNRLQR   85 (298)
T ss_dssp             -------CCHHHHHHHHHHHHHHTTCEECCCCSSCCSSGGGSHHHHTGGGCSSCEEEEEEEEEECCC-----CCTTCCSE
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHCE
T ss_conf             33210322299999999999987796887675542464668889998631987632664246779998876789323110


Q ss_pred             EEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEEEEECCEEEHHHHHHHHHCCCCCCCC
Q ss_conf             44445575798335899999999981999621717988328887001101232176887874147778998668257751
Q gi|254780757|r   84 YYQFQVIIKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWECWCDGMEISQFTYFQQVCGIECSPI  163 (307)
Q Consensus        84 y~QfQVilKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWEvwldGMEItQFTYFQQvGGi~c~pv  163 (307)
                      ||||||||||||+|+|+|||+||++||||+++||||||||||||||||||||||||||||||||||||||||||++|+||
T Consensus        86 y~QfQVilKPsp~n~q~lYL~SL~~igid~~~hDIrFveDnWEsPtLGAwGlGWEVwldGMEItQFTYFQQvGGi~c~pv  165 (298)
T 1j5w_A           86 YFQYQVIIKPSPENSQELYLESLEYLGINLKEHDIRFVEDNWESPTLGAWGVGWEVWLDGMEITQFTYFQQIGGISLKDI  165 (298)
T ss_dssp             EEEEEEEEESCCSSHHHHHHHHHHHTTCCTTTSCEEEEEECCEEGGGTEEEEEEEEEETTEEEEEEEEEEEBTTBCCSSC
T ss_pred             EEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCEEEEEEEEECCEEEEEEEEEEEECCEECCCC
T ss_conf             03458997789466899999999983999202144786227778761211200599988768752440311277533442


Q ss_pred             HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             45678789999999869982113320688878831106244746997776350179899999999999999999850066
Q gi|254780757|r  164 SGEITYGLERLAMYVQNVNSVYDIVFNAIEGQNVLYGDIFAQSEQEYSRYNFEYANPEILHNHFIDSEKECLDLLKKGIP  243 (307)
Q Consensus       164 ~~EiTYGLERiaMylQ~vdnvyDl~wn~~~~~~vtYGdif~q~E~E~S~YNFE~Ad~~~L~~~F~~yE~Ea~rLle~~LP  243 (307)
                      ++||||||||||||||+|||||||+||    +++||||||+|+|+|||+||||+||+++|+++|++||+||++||+++||
T Consensus       166 ~~EiTYGLERiaMylQ~vdnv~Dl~w~----~~vtYGDif~q~E~E~S~YNFe~ad~~~L~~~F~~~E~Ea~rLle~~L~  241 (298)
T 1j5w_A          166 PLEITYGLERIAMYLQGVDNVYEVQWN----ENVKYGDVFLENEREFSVFNFEEANVGLLFRHFDEYEKEFYRLVEKNLY  241 (298)
T ss_dssp             CEEEEEEHHHHHHHHHTCSSGGGCEEE----TTEEHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             CHHHHHHHHHHHHHHHCCCHHHCCCCC----CCCCHHHHHHHHHHHHHHHCHHHCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             201002499999998487335030057----9974327753558999885535339999999999999999999866999


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CC
Q ss_conf             53233553013828999999999878883875017889999999999999999999854516-89
Q gi|254780757|r  244 NEHHRHHLCVFPAYDQCIKASHIFNLLDARGVISTTERQRYILRIRSLAKACGEAFLMTPNG-GH  307 (307)
Q Consensus       244 ~~~~~~~~lvlPAYD~~LKaSH~FNLLDARGaISVTERq~YI~RIR~Lak~~A~ayl~~re~-g~  307 (307)
                                +||||+||||||+||||||||||||||||+||+|||+|||+||++|+++|+. |+
T Consensus       242 ----------lPAYD~~LKaSH~FNLLDARGaISVtER~~YI~RVR~LAk~~A~~y~e~r~~lgf  296 (298)
T 1j5w_A          242 ----------LPAYDYILKCSHTFNLLDARGAISVSQRQTYVKRIQAMARKAARVFLEVQANENS  296 (298)
T ss_dssp             ----------HHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred             ----------CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             ----------6669999999888888763478758999999999999999999999998875599