HHsearch results for GI: 254780757 and protein with PDBid: 1j5w_A
>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1
Probab=100.00 E-value=0 Score=1221.61 Aligned_cols=290 Identities=57% Similarity=1.021 Sum_probs=284.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCE
Q ss_conf 43356777799999999999986695896116754333224857898744834401676415578876554667750011
Q gi|254780757|r 4 IHNKKNDLSFQNIILTLTQYWAQQGCTILQPYDMEVGAGTFHPSTTLRALGPLSWKAAYVQPSRRPLDGRYAENPNRLQH 83 (307)
Q Consensus 4 ~~~~~~~~~fq~ii~~L~~fW~~~GC~i~qpyd~e~GAgT~hp~T~lr~lg~~pw~~aYvqPsrRP~DgRYGeNPNRlq~ 83 (307)
+....+.|+||+||++||+||+++||+|+||||+|||||||||+|||||||||||++|||||||||+|||||+|||||||
T Consensus 6 ~~~~~~~m~fq~~i~~L~~fW~~~GC~i~qpyd~evGAgT~~P~T~lr~lgp~pw~~aYvqPsrRP~DgRYGeNPNRLq~ 85 (298)
T 1j5w_A 6 IHHHHHHMYLQDVIMKLNDFWASKGCLLEQPYDMEVGAGTFHPATFFGSLRKGPWKVAYVQPSRRPTDGRYGENPNRLQR 85 (298)
T ss_dssp -------CCHHHHHHHHHHHHHHTTCEECCCCSSCCSSGGGSHHHHTGGGCSSCEEEEEEEEEECCC-----CCTTCCSE
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHCE
T ss_conf 33210322299999999999987796887675542464668889998631987632664246779998876789323110
Q ss_pred EEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEEEEECCEEEHHHHHHHHHCCCCCCCC
Q ss_conf 44445575798335899999999981999621717988328887001101232176887874147778998668257751
Q gi|254780757|r 84 YYQFQVIIKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWECWCDGMEISQFTYFQQVCGIECSPI 163 (307)
Q Consensus 84 y~QfQVilKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWEvwldGMEItQFTYFQQvGGi~c~pv 163 (307)
||||||||||||+|+|+|||+||++||||+++||||||||||||||||||||||||||||||||||||||||||++|+||
T Consensus 86 y~QfQVilKPsp~n~q~lYL~SL~~igid~~~hDIrFveDnWEsPtLGAwGlGWEVwldGMEItQFTYFQQvGGi~c~pv 165 (298)
T 1j5w_A 86 YFQYQVIIKPSPENSQELYLESLEYLGINLKEHDIRFVEDNWESPTLGAWGVGWEVWLDGMEITQFTYFQQIGGISLKDI 165 (298)
T ss_dssp EEEEEEEEESCCSSHHHHHHHHHHHTTCCTTTSCEEEEEECCEEGGGTEEEEEEEEEETTEEEEEEEEEEEBTTBCCSSC
T ss_pred EEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCEEEEEEEEECCEEEEEEEEEEEECCEECCCC
T ss_conf 03458997789466899999999983999202144786227778761211200599988768752440311277533442
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 45678789999999869982113320688878831106244746997776350179899999999999999999850066
Q gi|254780757|r 164 SGEITYGLERLAMYVQNVNSVYDIVFNAIEGQNVLYGDIFAQSEQEYSRYNFEYANPEILHNHFIDSEKECLDLLKKGIP 243 (307)
Q Consensus 164 ~~EiTYGLERiaMylQ~vdnvyDl~wn~~~~~~vtYGdif~q~E~E~S~YNFE~Ad~~~L~~~F~~yE~Ea~rLle~~LP 243 (307)
++||||||||||||||+|||||||+|| +++||||||+|+|+|||+||||+||+++|+++|++||+||++||+++||
T Consensus 166 ~~EiTYGLERiaMylQ~vdnv~Dl~w~----~~vtYGDif~q~E~E~S~YNFe~ad~~~L~~~F~~~E~Ea~rLle~~L~ 241 (298)
T 1j5w_A 166 PLEITYGLERIAMYLQGVDNVYEVQWN----ENVKYGDVFLENEREFSVFNFEEANVGLLFRHFDEYEKEFYRLVEKNLY 241 (298)
T ss_dssp CEEEEEEHHHHHHHHHTCSSGGGCEEE----TTEEHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHHHCCCHHHCCCCC----CCCCHHHHHHHHHHHHHHHCHHHCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 201002499999998487335030057----9974327753558999885535339999999999999999999866999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CC
Q ss_conf 53233553013828999999999878883875017889999999999999999999854516-89
Q gi|254780757|r 244 NEHHRHHLCVFPAYDQCIKASHIFNLLDARGVISTTERQRYILRIRSLAKACGEAFLMTPNG-GH 307 (307)
Q Consensus 244 ~~~~~~~~lvlPAYD~~LKaSH~FNLLDARGaISVTERq~YI~RIR~Lak~~A~ayl~~re~-g~ 307 (307)
+||||+||||||+||||||||||||||||+||+|||+|||+||++|+++|+. |+
T Consensus 242 ----------lPAYD~~LKaSH~FNLLDARGaISVtER~~YI~RVR~LAk~~A~~y~e~r~~lgf 296 (298)
T 1j5w_A 242 ----------LPAYDYILKCSHTFNLLDARGAISVSQRQTYVKRIQAMARKAARVFLEVQANENS 296 (298)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred ----------CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf ----------6669999999888888763478758999999999999999999999998875599