HHsearch results for GI: 254780757 and protein with PDBid: 1yfs_A
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=98.25 E-value=2.4e-06 Score=65.57 Aligned_cols=173 Identities=23% Similarity=0.254 Sum_probs=111.8
Q ss_pred CCCHHHHHHHHHHHHHHCCCEEEECCCCC---------CCC--CCCCHHHHHHHCCCCCCEEEEECCCCCCC----CCC-
Q ss_conf 77799999999999986695896116754---------333--22485789874483440167641557887----655-
Q gi|254780757|r 10 DLSFQNIILTLTQYWAQQGCTILQPYDME---------VGA--GTFHPSTTLRALGPLSWKAAYVQPSRRPL----DGR- 73 (307)
Q Consensus 10 ~~~fq~ii~~L~~fW~~~GC~i~qpyd~e---------~GA--gT~hp~T~lr~lg~~pw~~aYvqPsrRP~----DgR- 73 (307)
+||..+|-.+--+|+.++|+.++.+|.+= ++| -.|-| -|+...-|..-+++-+|||-|-+ |=.
T Consensus 2 ~~t~~eiR~~fl~fF~~~gH~~i~s~~vvp~~d~~llft~Agm~~Fkp-~~~G~~~p~~~~~~~~Q~CiR~~gkhnDld~ 80 (465)
T 1yfs_A 2 SLSAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKN-VFLGLEKRPYKRATSCQKCLRVSGKHNDLEQ 80 (465)
T ss_dssp CCCHHHHHHHHHHHHHTTTCEECCCCCSSCTTCTTCSSCCSTTSTTHH-HHHTSSCCSCSEEEEEEEEECEETTEECGGG
T ss_pred CCCHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCHHHCHH-HHCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 988999999999999868998858878678999973000034431502-3358989998885466636335887654665
Q ss_pred CCCCCCCCCEEEEEEEEECCCCH--------------------------------HHHHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf 46677500114444557579833--------------------------------5899999999981999621717988
Q gi|254780757|r 74 YAENPNRLQHYYQFQVIIKPNPL--------------------------------NLQNLYIESLKAVGIDPLIHDVRFV 121 (307)
Q Consensus 74 YGeNPNRlq~y~QfQVilKPsp~--------------------------------niq~lYl~SL~~iGid~~~hDIrFv 121 (307)
-|.. +| ||.=|..+=-=|-. ...+-|--=.+.+||++ +.|-+.
T Consensus 81 VG~t-~r--H~T~FEMlGn~sFgdYfK~eai~~a~e~lt~~l~l~~~~l~vt~~~~d~e~~~~~~~~~gi~~--~~i~~~ 155 (465)
T 1yfs_A 81 VGYT-SR--HHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPKEKLYVSVYKDDEEAYRIWNEHIGIPS--ERIWRL 155 (465)
T ss_dssp BTTB-SS--CCSEEEEEEEEESSSCCHHHHHHHHHHHHHHTSCCCGGGEEEEEETTCHHHHHHHHTTTCCCG--GGEEEE
T ss_pred HCCC-CC--CCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHCCCH--HHCEEC
T ss_conf 0888-87--512322055411587437889999999876650678665379982760788899998609987--882304
Q ss_pred --ECC-CCCCHHHHCCCCEEEEECC----------EEEHHHH--HHHH-HCC-C-CCCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf --328-8870011012321768878----------7414777--8998-668-2-5775145678789999999869982
Q gi|254780757|r 122 --EDN-WESPTLGAWGLGWECWCDG----------MEISQFT--YFQQ-VCG-I-ECSPISGEITYGLERLAMYVQNVNS 183 (307)
Q Consensus 122 --eDn-WEsPtLGAwGlGWEvwldG----------MEItQFT--YFQQ-vGG-i-~c~pv~~EiTYGLERiaMylQ~vdn 183 (307)
+|| |+.+--|.-|=-=|+-.|+ +||-... -|.+ -.| + ++.--.+.--+||||||+.+|++.+
T Consensus 156 ~~~dNfW~~g~~GpcGPcsEi~yd~~~~~~~~~r~lEiwNlVFmqy~~~~~G~l~~Lp~k~IDTGmGLERl~~vlqg~~s 235 (465)
T 1yfs_A 156 GEEDNFWQMGDVGPCGPSSEIYVDRGEEYEGDERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGKNS 235 (465)
T ss_dssp CHHHHEEESSSSEEEEEEEEEEEECCTTSCHHHHEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEHHHHHHHHTTCSS
T ss_pred CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCC
T ss_conf 75567231799988877525786367766898777986000243112579988856777645658419999999837887
Q ss_pred EEEEE
Q ss_conf 11332
Q gi|254780757|r 184 VYDIV 188 (307)
Q Consensus 184 vyDl~ 188 (307)
+||+.
T Consensus 236 ~ydtd 240 (465)
T 1yfs_A 236 NFEID 240 (465)
T ss_dssp GGGST
T ss_pred CCCHH
T ss_conf 55638