Query gi|254780757|ref|YP_003065170.1| glycyl-tRNA synthetase subunit alpha [Candidatus Liberibacter asiaticus str. psy62] Match_columns 307 No_of_seqs 141 out of 623 Neff 3.4 Searched_HMMs 23785 Date Mon May 30 13:35:44 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780757.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1j5w_A Glycyl-tRNA synthetase 100.0 0 0 1221.6 22.5 290 4-307 6-296 (298) 2 2ztg_A Alanyl-tRNA synthetase; 98.8 3.7E-08 1.5E-12 78.7 10.9 265 8-287 57-367 (739) 3 2zze_A Alanyl-tRNA synthetase; 98.6 1.4E-06 5.7E-11 67.4 12.1 177 7-190 53-272 (752) 4 1yfs_A Alanyl-tRNA synthetase; 98.2 2.4E-06 1E-10 65.6 7.0 173 10-188 2-240 (465) 5 3hy0_A Alanyl-tRNA synthetase; 98.1 3.1E-05 1.3E-09 57.6 10.6 167 10-187 1-256 (441) 6 3dsq_A Pyrrolysyl-tRNA synthet 94.7 0.3 1.2E-05 28.7 13.2 167 12-190 72-276 (288) 7 2zin_A Pyrrolysyl-tRNA synthet 93.5 0.5 2.1E-05 27.0 10.6 159 13-187 80-277 (291) 8 3ib6_A Uncharacterized protein 93.3 0.18 7.4E-06 30.4 5.9 47 91-143 96-143 (189) 9 3l4g_A Phenylalanyl-tRNA synth 91.2 0.046 1.9E-06 34.6 0.8 123 56-191 346-481 (508) 10 2du7_A O-phosphoseryl-tRNA syn 90.6 1.1 4.5E-05 24.7 7.9 134 49-192 206-355 (549) 11 3k1z_A Haloacid dehalogenase-l 88.9 0.6 2.5E-05 26.5 5.0 91 48-146 113-210 (263) 12 1qq5_A Protein (L-2-haloacid d 88.4 0.33 1.4E-05 28.3 3.4 44 92-142 147-191 (253) 13 2om6_A Probable phosphoserine 86.7 0.94 4E-05 25.1 4.9 46 91-142 157-203 (235) 14 2gfh_A Haloacid dehalogenase-l 85.5 0.94 3.9E-05 25.1 4.4 48 90-143 174-223 (260) 15 3i7f_A Aspartyl-tRNA synthetas 85.1 0.41 1.7E-05 27.7 2.4 174 15-189 249-538 (548) 16 1n9w_A Aspartyl-tRNA synthetas 84.5 0.49 2.1E-05 27.1 2.6 55 133-188 333-411 (422) 17 1x42_A Hypothetical protein PH 83.9 1.7 7E-05 23.3 5.1 47 91-143 154-201 (232) 18 3pdw_A Uncharacterized hydrola 83.1 1.6 6.9E-05 23.3 4.8 51 86-142 177-228 (266) 19 2oyc_A PLP phosphatase, pyrido 83.1 1.7 7.1E-05 23.2 4.8 46 90-141 213-258 (306) 20 1c0a_A Aspartyl tRNA synthetas 82.9 0.4 1.7E-05 27.7 1.6 59 131-189 468-553 (585) 21 1e1o_A Lysyl-tRNA synthetase; 82.7 0.24 1E-05 29.3 0.4 57 133-189 409-496 (504) 22 1ses_A Seryl-tRNA synthetase; 82.7 1.5 6.4E-05 23.5 4.5 86 56-148 244-348 (421) 23 2rhq_A Phenylalanyl-tRNA synth 82.0 2.9 0.00012 21.5 6.9 169 12-190 54-277 (294) 24 3ed5_A YFNB; APC60080, bacillu 81.9 1.8 7.7E-05 23.0 4.7 88 47-142 109-204 (238) 25 2pke_A Haloacid delahogenase-l 81.6 2.5 0.00011 22.0 5.3 53 83-141 152-205 (251) 26 2no4_A (S)-2-haloacid dehaloge 81.5 1 4.4E-05 24.7 3.3 46 91-143 160-206 (240) 27 1zrn_A L-2-haloacid dehalogena 80.7 0.96 4E-05 25.0 2.9 45 91-142 150-195 (232) 28 1yv9_A Hydrolase, haloacid deh 80.5 2 8.2E-05 22.8 4.4 44 92-141 183-226 (264) 29 1l0w_A Aspartyl-tRNA synthetas 79.4 3.6 0.00015 20.9 6.3 58 132-189 463-547 (580) 30 1wyd_A Hypothetical aspartyl-t 79.1 1 4.3E-05 24.8 2.6 65 15-79 139-222 (429) 31 3ddh_A Putative haloacid dehal 79.1 2 8.4E-05 22.7 4.1 50 87-142 152-202 (234) 32 2odr_B Phosphoseryl-tRNA synth 77.1 4.1 0.00017 20.4 5.7 125 53-189 220-359 (648) 33 3epr_A Hydrolase, haloacid deh 76.4 2.9 0.00012 21.5 4.3 48 88-141 178-226 (264) 34 3i28_A Epoxide hydrolase 2; ar 74.7 1.7 7.2E-05 23.2 2.7 87 48-141 107-202 (555) 35 2g80_A Protein UTR4; YEL038W, 74.2 2.7 0.00011 21.7 3.7 44 92-142 187-231 (253) 36 2b0c_A Putative phosphatase; a 73.1 5.2 0.00022 19.7 4.9 89 48-143 98-193 (206) 37 3lss_A Seryl-tRNA synthetase; 72.3 5.4 0.00023 19.6 5.4 132 16-154 214-401 (484) 38 2c4n_A Protein NAGD; nucleotid 69.5 4.8 0.0002 20.0 4.0 48 88-141 172-220 (250) 39 2du3_A O-phosphoseryl-tRNA syn 69.1 1.4 5.9E-05 23.8 1.2 142 54-208 202-366 (534) 40 1yns_A E-1 enzyme; hydrolase f 68.4 4.1 0.00017 20.4 3.5 88 47-142 136-231 (261) 41 3a74_A Lysyl-tRNA synthetase; 68.2 0.54 2.3E-05 26.8 -1.0 72 15-90 179-271 (493) 42 3m9l_A Hydrolase, haloacid deh 67.6 4.5 0.00019 20.2 3.6 45 91-142 126-171 (205) 43 3e58_A Putative beta-phosphogl 65.7 5.3 0.00022 19.6 3.6 45 91-142 144-188 (214) 44 2i6x_A Hydrolase, haloacid deh 65.3 3.6 0.00015 20.9 2.7 45 91-142 149-194 (211) 45 2zg6_A Putative uncharacterize 64.8 6 0.00025 19.3 3.8 44 90-142 148-192 (220) 46 1nnh_A Asparaginyl-tRNA synthe 64.6 0.76 3.2E-05 25.8 -0.9 57 14-70 19-101 (294) 47 3cnh_A Hydrolase family protei 64.2 5.2 0.00022 19.7 3.4 44 91-141 140-183 (200) 48 2pr7_A Haloacid dehalogenase/e 64.0 4.6 0.00019 20.1 3.0 88 49-144 26-120 (137) 49 3bju_A Lysyl-tRNA synthetase; 63.5 0.97 4.1E-05 25.0 -0.5 58 132-189 413-501 (521) 50 1cja_A Protein (actin-fragmin 63.3 8 0.00034 18.3 4.2 38 88-128 93-130 (342) 51 3a5y_A GENX, putative lysyl-tR 63.1 0.81 3.4E-05 25.5 -0.9 71 14-89 40-137 (345) 52 3kzx_A HAD-superfamily hydrola 61.9 7.4 0.00031 18.6 3.8 44 91-140 158-201 (231) 53 2w43_A Hypothetical 2-haloalka 61.6 4.8 0.0002 19.9 2.8 45 90-143 126-171 (201) 54 1eov_A ASPRS, aspartyl-tRNA sy 60.9 1.1 4.8E-05 24.5 -0.5 60 15-74 183-261 (487) 55 1b7y_A Phers, protein (phenyla 60.7 2.3 9.6E-05 22.3 1.0 129 54-190 190-338 (350) 56 2ho4_A Haloacid dehalogenase-l 60.7 8.3 0.00035 18.2 3.9 47 90-142 177-224 (259) 57 2go7_A Hydrolase, haloacid deh 59.4 7 0.00029 18.8 3.3 43 91-140 139-181 (207) 58 2fdr_A Conserved hypothetical 57.9 8.9 0.00037 18.0 3.6 44 92-142 143-187 (229) 59 1te2_A Putative phosphatase; s 57.6 8.9 0.00037 18.0 3.6 44 91-141 149-192 (226) 60 3err_A Fusion protein of micro 57.3 10 0.00042 17.6 5.6 61 54-114 351-423 (536) 61 2odr_A Phosphoseryl-tRNA synth 56.2 10 0.00044 17.5 9.4 127 52-190 219-360 (665) 62 3dv9_A Beta-phosphoglucomutase 55.9 10 0.00043 17.5 3.7 45 91-142 164-209 (247) 63 2hoq_A Putative HAD-hydrolase 54.9 11 0.00046 17.4 4.6 45 92-142 150-195 (241) 64 3nem_A Aspartyl-tRNA synthetas 54.9 1.6 6.8E-05 23.3 -0.5 67 14-80 141-226 (438) 65 2wf7_A Beta-PGM, beta-phosphog 53.8 11 0.00048 17.2 3.7 45 91-142 144-189 (221) 66 3m4p_A Ehasnrs, asparaginyl-tR 52.1 1.6 6.8E-05 23.4 -0.9 61 14-74 160-238 (456) 67 3l5k_A Protein GS1, haloacid d 47.2 5.4 0.00023 19.6 1.1 96 46-142 117-217 (250) 68 2fi1_A Hydrolase, haloacid deh 45.4 12 0.00052 17.0 2.7 89 46-145 87-182 (190) 69 3f7c_A Protein of unknown func 44.5 15 0.00065 16.3 6.2 61 238-305 76-136 (200) 70 1zcz_A Bifunctional purine bio 41.6 6.2 0.00026 19.1 0.7 36 67-102 176-217 (464) 71 2pib_A Phosphorylated carbohyd 39.7 17 0.00072 15.9 2.7 43 91-140 139-182 (216) 72 1vjr_A 4-nitrophenylphosphatas 35.6 21 0.00088 15.3 3.2 45 92-142 195-240 (271) 73 2odr_D Phosphoseryl-tRNA synth 35.5 21 0.00088 15.3 9.0 128 51-190 218-360 (685) 74 1wle_A Seryl-tRNA synthetase; 35.5 21 0.00088 15.3 4.9 132 15-154 224-413 (501) 75 2hdo_A Phosphoglycolate phosph 33.6 22 0.00095 15.1 3.5 42 91-139 137-178 (209) 76 2q9r_A Protein of unknown func 33.5 23 0.00095 15.1 7.4 61 238-305 77-137 (200) 77 2dq3_A Seryl-tRNA synthetase; 32.9 23 0.00097 15.0 2.9 81 54-143 248-343 (425) 78 2dq0_A Seryl-tRNA synthetase; 32.8 23 0.00097 15.0 2.8 81 55-144 270-365 (455) 79 2cja_A Seryl-tRNA synthetase; 29.8 11 0.00047 17.3 0.5 117 56-178 343-493 (522) 80 3mc1_A Predicted phosphatase, 29.5 26 0.0011 14.6 2.5 45 91-142 141-186 (226) 81 1wdi_A Hypothetical protein TT 29.4 21 0.00089 15.3 1.8 27 46-73 81-107 (345) 82 2x4d_A HLHPP, phospholysine ph 29.3 26 0.0011 14.6 4.8 47 90-142 188-235 (271) 83 2odr_C Phosphoseryl-tRNA synth 29.2 26 0.0011 14.6 8.8 127 53-191 220-361 (701) 84 1g8m_A Aicar transformylase-IM 27.2 28 0.0012 14.3 3.0 34 69-102 204-245 (593) 85 2qlt_A (DL)-glycerol-3-phospha 26.2 30 0.0012 14.2 3.6 47 91-142 169-221 (275) 86 1gji_A C-REL protein, C-REL pr 25.9 17 0.00071 16.0 0.8 14 158-171 158-171 (275) 87 3cmq_A Phenylalanyl-tRNA synth 25.8 20 0.00083 15.5 1.2 77 105-187 214-296 (415) 88 2hi0_A Putative phosphoglycola 25.3 31 0.0013 14.1 3.7 45 91-142 164-209 (240) 89 1qtq_A GLNRS, protein (glutami 23.8 16 0.00067 16.2 0.4 71 97-168 76-153 (553) 90 2hx1_A Predicted sugar phospha 22.5 34 0.0014 13.7 5.1 50 87-139 199-249 (284) 91 2oiz_D Aromatic amine dehydrog 20.9 30 0.0013 14.1 1.3 21 53-73 53-73 (135) 92 1v54_F VI, cytochrome C oxidas 20.9 36 0.0015 13.6 1.7 25 162-187 7-33 (98) 93 1yy3_A S-adenosylmethionine:tR 20.4 30 0.0013 14.1 1.2 14 149-162 143-156 (346) No 1 >1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1 Probab=100.00 E-value=0 Score=1221.61 Aligned_cols=290 Identities=57% Similarity=1.021 Sum_probs=284.0 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCE Q ss_conf 43356777799999999999986695896116754333224857898744834401676415578876554667750011 Q gi|254780757|r 4 IHNKKNDLSFQNIILTLTQYWAQQGCTILQPYDMEVGAGTFHPSTTLRALGPLSWKAAYVQPSRRPLDGRYAENPNRLQH 83 (307) Q Consensus 4 ~~~~~~~~~fq~ii~~L~~fW~~~GC~i~qpyd~e~GAgT~hp~T~lr~lg~~pw~~aYvqPsrRP~DgRYGeNPNRlq~ 83 (307) +....+.|+||+||++||+||+++||+|+||||+|||||||||+|||||||||||++|||||||||+|||||+||||||| T Consensus 6 ~~~~~~~m~fq~~i~~L~~fW~~~GC~i~qpyd~evGAgT~~P~T~lr~lgp~pw~~aYvqPsrRP~DgRYGeNPNRLq~ 85 (298) T 1j5w_A 6 IHHHHHHMYLQDVIMKLNDFWASKGCLLEQPYDMEVGAGTFHPATFFGSLRKGPWKVAYVQPSRRPTDGRYGENPNRLQR 85 (298) T ss_dssp -------CCHHHHHHHHHHHHHHTTCEECCCCSSCCSSGGGSHHHHTGGGCSSCEEEEEEEEEECCC-----CCTTCCSE T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHCE T ss_conf 33210322299999999999987796887675542464668889998631987632664246779998876789323110 Q ss_pred EEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEEEEECCEEEHHHHHHHHHCCCCCCCC Q ss_conf 44445575798335899999999981999621717988328887001101232176887874147778998668257751 Q gi|254780757|r 84 YYQFQVIIKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWECWCDGMEISQFTYFQQVCGIECSPI 163 (307) Q Consensus 84 y~QfQVilKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWEvwldGMEItQFTYFQQvGGi~c~pv 163 (307) ||||||||||||+|+|+|||+||++||||+++||||||||||||||||||||||||||||||||||||||||||++|+|| T Consensus 86 y~QfQVilKPsp~n~q~lYL~SL~~igid~~~hDIrFveDnWEsPtLGAwGlGWEVwldGMEItQFTYFQQvGGi~c~pv 165 (298) T 1j5w_A 86 YFQYQVIIKPSPENSQELYLESLEYLGINLKEHDIRFVEDNWESPTLGAWGVGWEVWLDGMEITQFTYFQQIGGISLKDI 165 (298) T ss_dssp EEEEEEEEESCCSSHHHHHHHHHHHTTCCTTTSCEEEEEECCEEGGGTEEEEEEEEEETTEEEEEEEEEEEBTTBCCSSC T ss_pred EEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCEEEEEEEEECCEEEEEEEEEEEECCEECCCC T ss_conf 03458997789466899999999983999202144786227778761211200599988768752440311277533442 Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 45678789999999869982113320688878831106244746997776350179899999999999999999850066 Q gi|254780757|r 164 SGEITYGLERLAMYVQNVNSVYDIVFNAIEGQNVLYGDIFAQSEQEYSRYNFEYANPEILHNHFIDSEKECLDLLKKGIP 243 (307) Q Consensus 164 ~~EiTYGLERiaMylQ~vdnvyDl~wn~~~~~~vtYGdif~q~E~E~S~YNFE~Ad~~~L~~~F~~yE~Ea~rLle~~LP 243 (307) ++||||||||||||||+|||||||+|| +++||||||+|+|+|||+||||+||+++|+++|++||+||++||+++|| T Consensus 166 ~~EiTYGLERiaMylQ~vdnv~Dl~w~----~~vtYGDif~q~E~E~S~YNFe~ad~~~L~~~F~~~E~Ea~rLle~~L~ 241 (298) T 1j5w_A 166 PLEITYGLERIAMYLQGVDNVYEVQWN----ENVKYGDVFLENEREFSVFNFEEANVGLLFRHFDEYEKEFYRLVEKNLY 241 (298) T ss_dssp CEEEEEEHHHHHHHHHTCSSGGGCEEE----TTEEHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCH T ss_pred CHHHHHHHHHHHHHHHCCCHHHCCCCC----CCCCHHHHHHHHHHHHHHHCHHHCCHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 201002499999998487335030057----9974327753558999885535339999999999999999999866999 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CC Q ss_conf 53233553013828999999999878883875017889999999999999999999854516-89 Q gi|254780757|r 244 NEHHRHHLCVFPAYDQCIKASHIFNLLDARGVISTTERQRYILRIRSLAKACGEAFLMTPNG-GH 307 (307) Q Consensus 244 ~~~~~~~~lvlPAYD~~LKaSH~FNLLDARGaISVTERq~YI~RIR~Lak~~A~ayl~~re~-g~ 307 (307) +||||+||||||+||||||||||||||||+||+|||+|||+||++|+++|+. |+ T Consensus 242 ----------lPAYD~~LKaSH~FNLLDARGaISVtER~~YI~RVR~LAk~~A~~y~e~r~~lgf 296 (298) T 1j5w_A 242 ----------LPAYDYILKCSHTFNLLDARGAISVSQRQTYVKRIQAMARKAARVFLEVQANENS 296 (298) T ss_dssp ----------HHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC--- T ss_pred ----------CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf ----------6669999999888888763478758999999999999999999999998875599 No 2 >2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} Probab=98.84 E-value=3.7e-08 Score=78.74 Aligned_cols=265 Identities=18% Similarity=0.278 Sum_probs=155.1 Q ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEECCCCC---------CCCC--CCCHHHHHHHCCCCCCEEEEECCCCCCCCC-CCC Q ss_conf 6777799999999999986695896116754---------3332--248578987448344016764155788765-546 Q gi|254780757|r 8 KNDLSFQNIILTLTQYWAQQGCTILQPYDME---------VGAG--TFHPSTTLRALGPLSWKAAYVQPSRRPLDG-RYA 75 (307) Q Consensus 8 ~~~~~fq~ii~~L~~fW~~~GC~i~qpyd~e---------~GAg--T~hp~T~lr~lg~~pw~~aYvqPsrRP~Dg-RYG 75 (307) +.+++..+|-.+--+|+.++|+.++.+|.+= +.|| .|-|.-+....-|..=+++=.|||-|-.|= .-| T Consensus 57 ~~~~~~~eiR~~fl~FF~~~gH~~i~s~pvvp~~d~~llft~Agm~~Fkp~~~~G~~~pp~~~l~~sQkCiR~nDld~VG 136 (739) T 2ztg_A 57 KKPFELDEMREYYLNFFERRGHGRIERYPVVARWRTDIYLTIASIADFQPFVTSGVAPPPANPLTISQPCIRLDDLDSVG 136 (739) T ss_dssp SSCCCHHHHHHHHHHHHHTTTCEECCCCCSBCTTCSSBSBCCSGGGGGTTTTTTSSSCCSSSSEEEEEEEECGGGGGGTT T ss_pred CCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCEEEEECCCHHCHHHHCCCCCCCCCCCCCCCCCCEECCCHHHCC T ss_conf 88688999999999999878987807858288999984676057410616551986689988714553512137687629 Q ss_pred CCCCCCCEEEEEEEEECCC----------CHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEEEEECCEE Q ss_conf 6775001144445575798----------335899999999981999621717988328887001101232176887874 Q gi|254780757|r 76 ENPNRLQHYYQFQVIIKPN----------PLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWECWCDGME 145 (307) Q Consensus 76 eNPNRlq~y~QfQVilKPs----------p~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWEvwldGME 145 (307) .. + .||.=|.-+=-=| .+...+.-.+=|..|||++. +|-|.||.|+.. |.-|--.|+-.+|+| T Consensus 137 ~t-~--rH~TfFEMlGn~SFg~~~k~~Yfk~e~i~~~~e~l~~lGi~~~--~i~~~e~~W~~g--G~~GPc~E~~~~glE 209 (739) T 2ztg_A 137 RT-G--RHLTLFEMMAHHAFNYPGKEIYWKNETVAYCTELLNELGVKKE--DIVYKEEPWAGG--GNAGPCLEAIVGGLE 209 (739) T ss_dssp TS-S--SCCSEEEEEEEEEEEBTTBCSCCHHHHHHHHHHHHHHHTCCGG--GCEEEEEEEEET--TEEEEEEEEEETTEE T ss_pred CC-C--CCCHHEEECCCEECCCCCHHHHHHHHHHHHHHHHHHHCCCCHH--HCCCCCCCCCCC--CCCCCCCCCCCCCCC T ss_conf 88-8--7630003566503189757777788999999999998399899--901456752248--996488421338600 Q ss_pred EHHHHHHHH----HCCCC--------CCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCC-----CCCCCCCC---HHHHH Q ss_conf 147778998----66825--------775145678789999999869982113320688-----87883110---62447 Q gi|254780757|r 146 ISQFTYFQQ----VCGIE--------CSPISGEITYGLERLAMYVQNVNSVYDIVFNAI-----EGQNVLYG---DIFAQ 205 (307) Q Consensus 146 ItQFTYFQQ----vGGi~--------c~pv~~EiTYGLERiaMylQ~vdnvyDl~wn~~-----~~~~vtYG---dif~q 205 (307) |--.-+.|- -|.++ +.--.+.--|||||+++.+|++.++||..+... +.-++.|+ +.+.. T Consensus 210 i~nlVFmq~~~~~~G~~e~~~~~~~~lp~~~VDTG~GLER~~~v~qg~pt~Yd~~f~~~i~~~~~~~~~~~~~~~~~~~~ 289 (739) T 2ztg_A 210 VATLVFMNLEEHPEGDIEIKGARYRKMDNYIVDTGYGLERFVWASKGTPTVYDAIFPEVVDTIIDNSNVSFNREDERVRR 289 (739) T ss_dssp EEEEEEEEEEECTTCCEEETTEEEEEEEEEEEEEEEEHHHHHHHHHCCSSHHHHHCHHHHHHHHHTSCCSSCTTCHHHHH T ss_pred CCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHH T ss_conf 02100101454899870236544576788641677415666542079888443432578999998608876762255666 Q ss_pred HHHHHHHHH--HHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH--HHHHHHCCCCHHHHH Q ss_conf 469977763--5017989999999999999999985006653233553013828999999999--878883875017889 Q gi|254780757|r 206 SEQEYSRYN--FEYANPEILHNHFIDSEKECLDLLKKGIPNEHHRHHLCVFPAYDQCIKASHI--FNLLDARGVISTTER 281 (307) Q Consensus 206 ~E~E~S~YN--FE~Ad~~~L~~~F~~yE~Ea~rLle~~LP~~~~~~~~lvlPAYD~~LKaSH~--FNLLDARGaISVTER 281 (307) --.+.|++. ....+.+.+....+...... . +.. ........|.-..=.=|-|+ --.+=|-|++--.+- T Consensus 290 i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----~--~~~--~~~~~~~~~~~~~rvIADH~Ra~~f~IaDGv~PSN~G 361 (739) T 2ztg_A 290 IVAESSKLAGIMGELRGERLNQLRKSVADTV----G--VSV--EELEGIVVPLEKVYSLADHTRCILFMLGDGLVPSNAG 361 (739) T ss_dssp HHHHHHHHHHHHTTCCTHHHHHHHHHHHHHH----S--SCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSH T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHC----C--CCH--HHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC T ss_conf 6887776517666433025777754344422----7--776--7740123431001214289888898860575567677 Q ss_pred HHHHHH Q ss_conf 999999 Q gi|254780757|r 282 QRYILR 287 (307) Q Consensus 282 q~YI~R 287 (307) ++|++| T Consensus 362 rGYvlR 367 (739) T 2ztg_A 362 AGYLAR 367 (739) T ss_dssp HHHHHH T ss_pred CCHHHH T ss_conf 428999 No 3 >2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* Probab=98.56 E-value=1.4e-06 Score=67.36 Aligned_cols=177 Identities=21% Similarity=0.342 Sum_probs=125.0 Q ss_pred CCCCCCHHHHHHHHHHHHHHC---CCEEEECCCCC---------C--CCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCC Q ss_conf 567777999999999999866---95896116754---------3--332248578987448344016764155788765 Q gi|254780757|r 7 KKNDLSFQNIILTLTQYWAQQ---GCTILQPYDME---------V--GAGTFHPSTTLRALGPLSWKAAYVQPSRRPLDG 72 (307) Q Consensus 7 ~~~~~~fq~ii~~L~~fW~~~---GC~i~qpyd~e---------~--GAgT~hp~T~lr~lg~~pw~~aYvqPsrRP~Dg 72 (307) .+.+++..+|=.+--+|+.++ |..++.||.+- + |-..|-|.-|....-|..=+++-.|||-|-.|= T Consensus 53 ~~~~~~~~eiR~~fl~fF~~~~~~gH~~i~~~pvvp~~~~~llft~Agm~~Fkp~v~~G~~~pp~~~l~~sQ~CiR~nDl 132 (752) T 2zze_A 53 IPRXYTLDEMREXFLRFFEXHEIYPHGRVXRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPPANPLVISQPSIRFTDI 132 (752) T ss_dssp SSSCCCHHHHHHHHHHHHHTCSSSCCEECCCCCSSCTTCSSCSSCCSGGGGGTTHHHHTSSCCSSSSEEEEEEEECCTTG T ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCH T ss_conf 77758999999999998386888997387147837799998246603664355721578768999972455200003747 Q ss_pred CCCCCCCC-CCEEEEEEEEECCCC----------HHHHHHHHHHH-HHCCCCCCCCCEEEEECCCCCCHHHHCCCCEEEE Q ss_conf 54667750-011444455757983----------35899999999-9819996217179883288870011012321768 Q gi|254780757|r 73 RYAENPNR-LQHYYQFQVIIKPNP----------LNLQNLYIESL-KAVGIDPLIHDVRFVEDNWESPTLGAWGLGWECW 140 (307) Q Consensus 73 RYGeNPNR-lq~y~QfQVilKPsp----------~niq~lYl~SL-~~iGid~~~hDIrFveDnWEsPtLGAwGlGWEvw 140 (307) +|--| -.||.=|.-+=-=|- +...++-.+=| +.+||+|. +|-|.|+-|+-- |--|=--||- T Consensus 133 ---dnVG~t~rH~T~FEMlGn~sFg~~~~~~Y~k~e~i~~~~e~lt~~lgi~~~--~i~~~en~W~~G--G~~GPc~Ei~ 205 (752) T 2zze_A 133 ---DNVGITGRHFTIFEMMAHHAFNYPGXPIYWMDETVELAFEFFTKELXMXPE--DITFKENPWAGG--GNAGPAFEVL 205 (752) T ss_dssp ---GGTTTSSSCCSEEEEEEEEEEECTTCCCCCHHHHHHHHHHHHHHTSCCCGG--GEEEEECCEEET--TEEECEEEEE T ss_pred ---HHCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCEEEECHH--HCCCCCCCCCCC--CCCCCCEEEE T ss_conf ---655788764055760412512899701769999999999975212342576--615545766589--8998875688 Q ss_pred ECCEEEHHHHHHH--HH--CCC----------CCCCC---HHHHHHHHHHHHHHHCCCCCEEEEEEC Q ss_conf 8787414777899--86--682----------57751---456787899999998699821133206 Q gi|254780757|r 141 CDGMEISQFTYFQ--QV--CGI----------ECSPI---SGEITYGLERLAMYVQNVNSVYDIVFN 190 (307) Q Consensus 141 ldGMEItQFTYFQ--Qv--GGi----------~c~pv---~~EiTYGLERiaMylQ~vdnvyDl~wn 190 (307) -+|+||--.-+.| +. |+. ...|. .+---|||||||+.+||+.++||..+. T Consensus 206 ~~glEi~nlVFmq~~~~~~g~~~~~~~~~~~~~~~~Lp~k~VDTGmGLERl~~vlQg~~t~Ydtd~~ 272 (752) T 2zze_A 206 YRGLEVATLVFMQYXXAPENAPQDQVVVIXGEKYIPMETXVVDTGYGLERLVWMSQGTPTAYDAVLG 272 (752) T ss_dssp ETTEEEEEEEEEEEEECCTTCCSCCEEETTTEEEEEEEEEEEEEEEEHHHHHHHHHCCSSHHHHHSH T ss_pred ECCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHCCCH T ss_conf 7144421000100255888875654233453014668878658887899999998289970221341 No 4 >1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A Probab=98.25 E-value=2.4e-06 Score=65.57 Aligned_cols=173 Identities=23% Similarity=0.254 Sum_probs=111.8 Q ss_pred CCCHHHHHHHHHHHHHHCCCEEEECCCCC---------CCC--CCCCHHHHHHHCCCCCCEEEEECCCCCCC----CCC- Q ss_conf 77799999999999986695896116754---------333--22485789874483440167641557887----655- Q gi|254780757|r 10 DLSFQNIILTLTQYWAQQGCTILQPYDME---------VGA--GTFHPSTTLRALGPLSWKAAYVQPSRRPL----DGR- 73 (307) Q Consensus 10 ~~~fq~ii~~L~~fW~~~GC~i~qpyd~e---------~GA--gT~hp~T~lr~lg~~pw~~aYvqPsrRP~----DgR- 73 (307) +||..+|-.+--+|+.++|+.++.+|.+= ++| -.|-| -|+...-|..-+++-+|||-|-+ |=. T Consensus 2 ~~t~~eiR~~fl~fF~~~gH~~i~s~~vvp~~d~~llft~Agm~~Fkp-~~~G~~~p~~~~~~~~Q~CiR~~gkhnDld~ 80 (465) T 1yfs_A 2 SLSAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKN-VFLGLEKRPYKRATSCQKCLRVSGKHNDLEQ 80 (465) T ss_dssp CCCHHHHHHHHHHHHHTTTCEECCCCCSSCTTCTTCSSCCSTTSTTHH-HHHTSSCCSCSEEEEEEEEECEETTEECGGG T ss_pred CCCHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCHHHCHH-HHCCCCCCCCCCCCCCCCCCCCCCCCCCHHH T ss_conf 988999999999999868998858878678999973000034431502-3358989998885466636335887654665 Q ss_pred CCCCCCCCCEEEEEEEEECCCCH--------------------------------HHHHHHHHHHHHCCCCCCCCCEEEE Q ss_conf 46677500114444557579833--------------------------------5899999999981999621717988 Q gi|254780757|r 74 YAENPNRLQHYYQFQVIIKPNPL--------------------------------NLQNLYIESLKAVGIDPLIHDVRFV 121 (307) Q Consensus 74 YGeNPNRlq~y~QfQVilKPsp~--------------------------------niq~lYl~SL~~iGid~~~hDIrFv 121 (307) -|.. +| ||.=|..+=-=|-. ...+-|--=.+.+||++ +.|-+. T Consensus 81 VG~t-~r--H~T~FEMlGn~sFgdYfK~eai~~a~e~lt~~l~l~~~~l~vt~~~~d~e~~~~~~~~~gi~~--~~i~~~ 155 (465) T 1yfs_A 81 VGYT-SR--HHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPKEKLYVSVYKDDEEAYRIWNEHIGIPS--ERIWRL 155 (465) T ss_dssp BTTB-SS--CCSEEEEEEEEESSSCCHHHHHHHHHHHHHHTSCCCGGGEEEEEETTCHHHHHHHHTTTCCCG--GGEEEE T ss_pred HCCC-CC--CCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHCCCH--HHCEEC T ss_conf 0888-87--512322055411587437889999999876650678665379982760788899998609987--882304 Q ss_pred --ECC-CCCCHHHHCCCCEEEEECC----------EEEHHHH--HHHH-HCC-C-CCCCCHHHHHHHHHHHHHHHCCCCC Q ss_conf --328-8870011012321768878----------7414777--8998-668-2-5775145678789999999869982 Q gi|254780757|r 122 --EDN-WESPTLGAWGLGWECWCDG----------MEISQFT--YFQQ-VCG-I-ECSPISGEITYGLERLAMYVQNVNS 183 (307) Q Consensus 122 --eDn-WEsPtLGAwGlGWEvwldG----------MEItQFT--YFQQ-vGG-i-~c~pv~~EiTYGLERiaMylQ~vdn 183 (307) +|| |+.+--|.-|=-=|+-.|+ +||-... -|.+ -.| + ++.--.+.--+||||||+.+|++.+ T Consensus 156 ~~~dNfW~~g~~GpcGPcsEi~yd~~~~~~~~~r~lEiwNlVFmqy~~~~~G~l~~Lp~k~IDTGmGLERl~~vlqg~~s 235 (465) T 1yfs_A 156 GEEDNFWQMGDVGPCGPSSEIYVDRGEEYEGDERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGKNS 235 (465) T ss_dssp CHHHHEEESSSSEEEEEEEEEEEECCTTSCHHHHEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEHHHHHHHHTTCSS T ss_pred CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCC T ss_conf 75567231799988877525786367766898777986000243112579988856777645658419999999837887 Q ss_pred EEEEE Q ss_conf 11332 Q gi|254780757|r 184 VYDIV 188 (307) Q Consensus 184 vyDl~ 188 (307) +||+. T Consensus 236 ~ydtd 240 (465) T 1yfs_A 236 NFEID 240 (465) T ss_dssp GGGST T ss_pred CCCHH T ss_conf 55638 No 5 >3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, nucleotide-binding, amino acid-binding, acetylation; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A* Probab=98.13 E-value=3.1e-05 Score=57.55 Aligned_cols=167 Identities=26% Similarity=0.280 Sum_probs=103.8 Q ss_pred CCCHHHHHHHHHHHHHHCCCEEEECCCCC---------CCC--CCCCHHHHHHHCCCCCCEEEEECCCCCCC----C--- Q ss_conf 77799999999999986695896116754---------333--22485789874483440167641557887----6--- Q gi|254780757|r 10 DLSFQNIILTLTQYWAQQGCTILQPYDME---------VGA--GTFHPSTTLRALGPLSWKAAYVQPSRRPL----D--- 71 (307) Q Consensus 10 ~~~fq~ii~~L~~fW~~~GC~i~qpyd~e---------~GA--gT~hp~T~lr~lg~~pw~~aYvqPsrRP~----D--- 71 (307) .+|-.+|-.+--+|+.++|+.++.+|.+= +.| ..|-| -|+...-|.--+++-+|||-|-. | T Consensus 1 ~~s~~eiR~~Fl~FF~~~gH~~v~s~~vvp~~d~~llft~Agm~~Fkp-~f~G~~~p~~~rl~~sQkCiR~ggkhnDld~ 79 (441) T 3hy0_A 1 SKSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKD-VFLGLDKRNYSRATTSQRCVRAGGKHNDLEN 79 (441) T ss_dssp CCCHHHHHHHHHHHHHHTTCEECCCCCSSCSSCTTCSSCCSGGGGGHH-HHHTSSCCSCSEEEEEEEEECEETTEECGGG T ss_pred CCCHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCEECCCHHHHHH-HHCCCCCCCCCCCCCCCCCCCCCCCCCCHHH T ss_conf 977899999999999868988848878678999973110045343246-6549999999973143416236898777877 Q ss_pred ----CC----------------------------------CCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCC Q ss_conf ----55----------------------------------4667750011444455757983358999999999819996 Q gi|254780757|r 72 ----GR----------------------------------YAENPNRLQHYYQFQVIIKPNPLNLQNLYIESLKAVGIDP 113 (307) Q Consensus 72 ----gR----------------------------------YGeNPNRlq~y~QfQVilKPsp~niq~lYl~SL~~iGid~ 113 (307) || ||-.|+||.--+= +.-.+.+---.+.+||+. T Consensus 80 VG~t~rH~TfFEMlGn~SFgdyfK~eai~~awe~lt~~~~~~l~~~rl~vtv~---------~~D~ea~~~w~~~~gi~~ 150 (441) T 3hy0_A 80 VGYTARHHTFFEMLGNFSFGDYFKLDAILFAWLLLTSEKWFALPKERLWVTVY---------ESDDEAYEIWEKEVGIPR 150 (441) T ss_dssp BTTBSSCCSEEEEEEEEESSSCCHHHHHHHHHHHHHCTTTTCCCGGGEEEEEE---------TTCHHHHHHHHHTTCCCG T ss_pred CCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEECCCCCEEEEEEE---------ECCHHHHHHHHHCCCCCH T ss_conf 28888625768754121448846788999999986023200205753699966---------367788999997279874 Q ss_pred CCCCEEEE--------ECC-CCCCHHHHCCCCEEEEEC-------------------CEEEHHHH---HHHHHCC-C-CC Q ss_conf 21717988--------328-887001101232176887-------------------87414777---8998668-2-57 Q gi|254780757|r 114 LIHDVRFV--------EDN-WESPTLGAWGLGWECWCD-------------------GMEISQFT---YFQQVCG-I-EC 160 (307) Q Consensus 114 ~~hDIrFv--------eDn-WEsPtLGAwGlGWEvwld-------------------GMEItQFT---YFQQvGG-i-~c 160 (307) .+=+|+- +|| |+..--|.-|-.=||-.| ++||--.- |.+.--| + ++ T Consensus 151 -~~i~~~~~~~~~~~~~dNfW~~G~~GPcGPcsEI~yd~g~~~~~~~~~~~~~~~~r~lEIwNlVFmqy~r~~dG~l~~L 229 (441) T 3hy0_A 151 -ERIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPL 229 (441) T ss_dssp -GGEEEECSTTSBTTBBTTEEESSSSEEEEEEEEEEEECCTTSCCCCTTSTTTTSSSEEEEEEEEEEEEEECTTSCEEEE T ss_pred -HHEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCEEEC T ss_conf -6289867656656534463215898688886689994365246899998776676135662265310003589976346 Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCEEEE Q ss_conf 751456787899999998699821133 Q gi|254780757|r 161 SPISGEITYGLERLAMYVQNVNSVYDI 187 (307) Q Consensus 161 ~pv~~EiTYGLERiaMylQ~vdnvyDl 187 (307) .--.+.--+||||||+.+|++.++||. T Consensus 230 p~k~IDTGmGLERl~~vlqg~~s~ydt 256 (441) T 3hy0_A 230 PKPSVDTAMGLERIAAVLQHVNSNYDI 256 (441) T ss_dssp EEEEEEEEEEHHHHHHHHTTCSSGGGS T ss_pred CCCCCCCCCCHHHHHHHHCCCCCCCCC T ss_conf 765532242599999997189964100 No 6 >3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A Probab=94.71 E-value=0.3 Score=28.70 Aligned_cols=167 Identities=18% Similarity=0.173 Sum_probs=97.9 Q ss_pred CHHHHHHHHHHHHHHCCCEEEECCCCC-------CCCCCCCH--------------------HHH-----HHHCCCCCCE Q ss_conf 799999999999986695896116754-------33322485--------------------789-----8744834401 Q gi|254780757|r 12 SFQNIILTLTQYWAQQGCTILQPYDME-------VGAGTFHP--------------------STT-----LRALGPLSWK 59 (307) Q Consensus 12 ~fq~ii~~L~~fW~~~GC~i~qpyd~e-------~GAgT~hp--------------------~T~-----lr~lg~~pw~ 59 (307) .+..++..+.+|..+.|...+.+-.++ .|.+.-|| ..+ .....+.|-+ T Consensus 72 ~~~~l~~~ir~~~~~~Gf~eV~tP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lrp~~~p~~~~~~~~~~~~~~~p~r 151 (288) T 3dsq_A 72 ALLELEEKLAKALHQQGFVQVVTPTIITKSALAKMTIGEDHPLFSQVFWLDGKKCLRPMLAPNLYTLWRELERLWDKPIR 151 (288) T ss_dssp HHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHHTTSSCC--CCTTTSCEEETTEEECSCSHHHHHHHHHHHTTTSCSCEE T ss_pred HHHHHHHHHHHHHHHCCCEEEECCCEEEHHHHHCCCCCCCCCCCCCEEECCCCEECCCCCCHHHHHHHHHHHHCCCCCEE T ss_conf 99999999999999887989987526522155345765443302204763742013435771788999986301479848 Q ss_pred EEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEC--CCCH---HHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHH-C Q ss_conf 676415578876554667750011444455757--9833---589999999998199962171798832888700110-1 Q gi|254780757|r 60 AAYVQPSRRPLDGRYAENPNRLQHYYQFQVIIK--PNPL---NLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGA-W 133 (307) Q Consensus 60 ~aYvqPsrRP~DgRYGeNPNRlq~y~QfQVilK--Psp~---niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGA-w 133 (307) +.++-+|.|-.+.. ..|+-.++|.-+.+- +... ++.++.-+.|+.+|+. |.+.+-+....+.... + T Consensus 152 ~~~ig~vfR~E~~~----~~h~~eFtQ~e~~~~~~~~~~~~~~l~~l~~~~l~~~g~~----~~~~~~~~~~~~~~~~~~ 223 (288) T 3dsq_A 152 IFEIGTCYRKESQG----AQHLNEFTMLNLTELGTPLEERHQRLEDMARWVLEAAGIR----EFELVTESSVVYGDTVDV 223 (288) T ss_dssp EEEEEEEECSCCSS----SCCCSEEEEEEEEEETCCGGGHHHHHHHHHHHHHHHHTCC----CCEEEECCCCSSCCCEEE T ss_pred EEEECEEECCCCCC----CCCCCCEEECCEEEECCCHHHHHHHHHHHHHHHHHHCCCC----CCEEEECCCCCCCEEEEC T ss_conf 99966255568688----8867827773158986988999999999999999985997----787997047777307861 Q ss_pred CCCEEEEECCEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEC Q ss_conf 232176887874147778998668257751456787899999998699821133206 Q gi|254780757|r 134 GLGWECWCDGMEISQFTYFQQVCGIECSPISGEITYGLERLAMYVQNVNSVYDIVFN 190 (307) Q Consensus 134 GlGWEvwldGMEItQFTYFQQvGGi~c~pv~~EiTYGLERiaMylQ~vdnvyDl~wn 190 (307) +-||.-.-.||=-.. -....||++ +|+.+ .-+|+||+||..-+++++-++.=+ T Consensus 224 ~~~~~El~~~~~~~~--~~~~~~~~~-~~~~~-~g~gierlam~~~g~~dir~~~r~ 276 (288) T 3dsq_A 224 MKGDLELASGAMGPH--FLDEKWEIF-DPWVG-LGFGLERLLMIREGTQHVQSMARS 276 (288) T ss_dssp EETTEEEEEEEEESC--TTTTTTTCC-SCEEE-EEEEHHHHHHHHHTCSCGGGGSSC T ss_pred CCCEEEEECCCCCHH--HHHHCCCCC-CCCEE-EECCHHHHHHHHCCCCCHHHHHHC T ss_conf 896688606875899--998658999-98788-735799999987099857776312 No 7 >2zin_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, pyrrolysine, ATP analogue, non-natural amino acid, unnatural amino acid, ATP-binding; HET: ANP LBY; 1.79A {Methanosarcina mazei} PDB: 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* Probab=93.49 E-value=0.5 Score=27.04 Aligned_cols=159 Identities=16% Similarity=0.193 Sum_probs=96.2 Q ss_pred HHHHHHHHHHHHHHCCCEEEECCCCC-------CCCCCCCH-------------------HHHHH---H---CCCCCCEE Q ss_conf 99999999999986695896116754-------33322485-------------------78987---4---48344016 Q gi|254780757|r 13 FQNIILTLTQYWAQQGCTILQPYDME-------VGAGTFHP-------------------STTLR---A---LGPLSWKA 60 (307) Q Consensus 13 fq~ii~~L~~fW~~~GC~i~qpyd~e-------~GAgT~hp-------------------~T~lr---~---lg~~pw~~ 60 (307) .-.++..+.+|-.++|++-....-++ .|-+.-+| .+..+ . -.+.|-++ T Consensus 80 ~~~i~~~ir~~f~~~Gf~EV~TP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~~~~~p~r~ 159 (291) T 2zin_A 80 LGKLEREITRFFVDRGFLEIKSPILIPLEYIERMGIDNDTELSKQIFRVDKNFCLRPMLAPNLYNYLRKLDRALPDPIKI 159 (291) T ss_dssp HHHHHHHHHHHHHHTTCEEECCCSEEETHHHHHTTCCTTSSGGGGCCEETTTEEECSCSHHHHHHHHHHHTTTSCSSEEE T ss_pred HHHHHHHHHHHHHHCCCEEEECCCEEEECCCCCCCCCCCCCCCCCEECCCCHHCCCCCCCCCHHHHHHHHHHHCCCCCEE T ss_conf 99999999999998879999765223312201368887741212132578011266423451457778776521334024 Q ss_pred EEECCCCCCCCCCCCCCCCCCCEEEEEEEEEC---CCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCE Q ss_conf 76415578876554667750011444455757---983358999999999819996217179883288870011012321 Q gi|254780757|r 61 AYVQPSRRPLDGRYAENPNRLQHYYQFQVIIK---PNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGW 137 (307) Q Consensus 61 aYvqPsrRP~DgRYGeNPNRlq~y~QfQVilK---Psp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGW 137 (307) .++.+|.|..+.. ..|+..++|.-+.+- .+-.++..+.-+-|+.+|++.. .+++...- .|-.. T Consensus 160 f~ig~vfR~e~~~----~~h~~eF~q~e~~~~~~~~~~~dl~~~~~~~l~~lg~~~~-----~~~~~~~~-----~~~~~ 225 (291) T 2zin_A 160 FEIGPCYRKESDG----KEHLEEFTMLNFCQMGSGCTRENLESIITDFLNHLGIDFK-----IVGDSCMV-----YGDTL 225 (291) T ss_dssp EEEEEEECCCSCS----SSCCSEEEEEEEEEESTTCCHHHHHHHHHHHHHHHTCCCE-----EECC----------CEEE T ss_pred EEECCEEEECCCC----CCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEE-----EECCCCCC-----CCCCC T ss_conf 6641012203456----7888863899999989999799999999999998599278-----71366567-----67660 Q ss_pred EEEECCEEEHHHHHH----HHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEE Q ss_conf 768878741477789----98668257751456787899999998699821133 Q gi|254780757|r 138 ECWCDGMEISQFTYF----QQVCGIECSPISGEITYGLERLAMYVQNVNSVYDI 187 (307) Q Consensus 138 EvwldGMEItQFTYF----QQvGGi~c~pv~~EiTYGLERiaMylQ~vdnvyDl 187 (307) +++.+..||..+--+ -.--|++ +...-.-+|+||+||...+++|+-.+ T Consensus 226 ~~~~~~~ei~~~~~~~~~v~~~~gid--~p~~~~g~g~erla~~~~~~~dir~~ 277 (291) T 2zin_A 226 DVMHGDLELSSAVVGPIPLDREWGID--KPWIGAGFGLERLLKVKHDFKNIKRA 277 (291) T ss_dssp EEEETTEEEEEEEESCCGGGGGGTCC--SCEEEEEEEHHHHHHHHTTCSSGGGG T ss_pred CCCCCCEEEECCCEECHHHHHHCCCC--CCEEEECCCHHHHHHHHCCCCCHHHH T ss_conf 21668757403860169999866999--98188675899999875299934555 No 8 >3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.20A {Listeria monocytogenes CLIP81459} Probab=93.28 E-value=0.18 Score=30.36 Aligned_cols=47 Identities=28% Similarity=0.473 Sum_probs=40.3 Q ss_pred ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEECC Q ss_conf 579833589999999998199962171798832888700110123217-68878 Q gi|254780757|r 91 IKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWCDG 143 (307) Q Consensus 91 lKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vwldG 143 (307) -||+| ++|..-++.+|++|. ++-||.|+|.+--.+|...|+. ||++. T Consensus 96 ~KP~p----~~~~~~l~~~~i~p~--~~l~VGD~~~~Di~~A~~aG~~ti~v~~ 143 (189) T 3ib6_A 96 EKPDK----TIFDFTLNALQIDKT--EAVMVGNTFESDIIGANRAGIHAIWLQN 143 (189) T ss_dssp CTTSH----HHHHHHHHHHTCCGG--GEEEEESBTTTTHHHHHHTTCEEEEECC T ss_pred CCCCH----HHHHHHHHHHHCCCC--CEEEEEECCHHHHHHHHHCCCEEEEECC T ss_conf 89884----899999997423466--3289974708879999985997999889 No 9 >3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Probab=91.24 E-value=0.046 Score=34.59 Aligned_cols=123 Identities=19% Similarity=0.253 Sum_probs=71.9 Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCHHHHHH---HHHHHHHCCCCCCCCCEEEEEC--CCCCCHH Q ss_conf 4401676415578876554667750011444455757983358999---9999998199962171798832--8887001 Q gi|254780757|r 56 LSWKAAYVQPSRRPLDGRYAENPNRLQHYYQFQVIIKPNPLNLQNL---YIESLKAVGIDPLIHDVRFVED--NWESPTL 130 (307) Q Consensus 56 ~pw~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQVilKPsp~niq~l---Yl~SL~~iGid~~~hDIrFveD--nWEsPtL 130 (307) .|.+...+..+.|+.+- .+..+-.+||..-++-.---++.+| --.-++.+| ..++||+.+ -+-.|+. T Consensus 346 ~p~k~f~i~rvfR~e~~----D~tH~~~fhQ~eg~v~~~~~~~~~L~~~l~~~~~~lg----~~~vR~~paYfPfTePS~ 417 (508) T 3l4g_A 346 TPVKYFSIDRVFRNETL----DATHLAEFHQIEGVVADHGLTLGHLMGVLREFFTKLG----ITQLRFKPAYNPYTEPSM 417 (508) T ss_dssp CCEEEEEEEEEECCSCC----CSSSCSEEEEEEEEEEEESCCHHHHHHHHHHHHHTTT----CCCCEEEECCCTTCSSEE T ss_pred CCEEECCCCCCCCCCCC----CCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCC----CCEEEECCCCCCCCCCEE T ss_conf 98045245552346778----6765776530311462278569999999999999739----964870689899999808 Q ss_pred HHCCCCEEEEECC----EEEHHHHHHH----HHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECC Q ss_conf 1012321768878----7414777899----86682577514567878999999986998211332068 Q gi|254780757|r 131 GAWGLGWECWCDG----MEISQFTYFQ----QVCGIECSPISGEITYGLERLAMYVQNVNSVYDIVFNA 191 (307) Q Consensus 131 GAwGlGWEvwldG----MEItQFTYFQ----QvGGi~c~pv~~EiTYGLERiaMylQ~vdnvyDl~wn~ 191 (307) -- +||.+| +||--.--|. .-.|++.+-...-.--|||||||-+-++++|-++--++ T Consensus 418 Ev-----~v~~~g~~~WlEv~g~G~~rpevL~~~Gi~~~~~~~AfGlGLERlAMl~~gI~DIR~l~~~~ 481 (508) T 3l4g_A 418 EV-----FSYHQGLKKWVEVGNSGVFRPEMLLPMGLPENVSVIAWGLSLERPTMIKYGINNIRELVGHK 481 (508) T ss_dssp EE-----EECCSTTSSCEEEEEEECCCHHHHGGGTCCTTEEEEEEEEESHHHHTTTTTCSCGGGTSSTT T ss_pred EE-----EEECCCCCCEEEEECCCCCCHHHHHHCCCCCCCEEEEEEECHHHHHHHHCCCCHHHHHHCCC T ss_conf 99-----99838999748982572577999986698989649998643989999980997677862578 No 10 >2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii} Probab=90.58 E-value=1.1 Score=24.68 Aligned_cols=134 Identities=19% Similarity=0.248 Sum_probs=76.9 Q ss_pred HHHHC---CCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCHHHHH---HHHHHHHHCCCCCCCCCEEEEE Q ss_conf 98744---83440167641557887655466775001144445575798335899---9999999819996217179883 Q gi|254780757|r 49 TLRAL---GPLSWKAAYVQPSRRPLDGRYAENPNRLQHYYQFQVIIKPNPLNLQN---LYIESLKAVGIDPLIHDVRFVE 122 (307) Q Consensus 49 ~lr~l---g~~pw~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQVilKPsp~niq~---lYl~SL~~iGid~~~hDIrFve 122 (307) .++.+ .+.|.++..+..|.|...- +.+-.+-.+||.-.++--.--++.+ ..-.-++.+|... -.+|+++ T Consensus 206 ~l~~l~e~~~~Pir~~s~GrVyRrD~i---~D~tH~~~FhQ~Eglvvd~~vt~~dLK~~L~~f~~~~~~~~--~k~R~~~ 280 (549) T 2du7_A 206 TLSSLIKKRKLPLKLFSIDRCFRREQR---EDRSHLMSYHSASCVVVGEDVSVDDGKVVAEGLLAQFGFTK--FKFKPDE 280 (549) T ss_dssp HHHTTTTTSCSSEEEEEEEEECCCCSS---CSSSCCSCEEEEEEEEECTTCCHHHHHHHHHHHHGGGTCCC--CCCEECT T ss_pred HHHHHHHCCCCCEEEECCCCCCCCCCC---CCHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCC--CEEEECC T ss_conf 999998527998056336654445555---64211787737776896078789999999999999977988--3898788 Q ss_pred CC--CCCCHHH--H-----CCCCE-EEEECCEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCC Q ss_conf 28--8870011--0-----12321-7688787414777899866825775145678789999999869982113320688 Q gi|254780757|r 123 DN--WESPTLG--A-----WGLGW-ECWCDGMEISQFTYFQQVCGIECSPISGEITYGLERLAMYVQNVNSVYDIVFNAI 192 (307) Q Consensus 123 Dn--WEsPtLG--A-----wGlGW-EvwldGMEItQFTYFQQvGGi~c~pv~~EiTYGLERiaMylQ~vdnvyDl~wn~~ 192 (307) +- |-.|+.- . |+=+| ||-=-|| |.+ ..+ .-.||+.. ..-.--|||||||-+-++++|-+|...+. T Consensus 281 syFPfTePs~EveV~~~~~~~g~WlEIlGcGm-v~P-~VL-~~~Gid~~--g~AfGlGlERLAMl~ygI~DIR~Ly~p~~ 355 (549) T 2du7_A 281 KKSKYYTPETQTEVYAYHPKLGEWIEVATFGV-YSP-IAL-AKYNIDVP--VMNLGLGVERLAMIIYGYEDVRAMVYPQF 355 (549) T ss_dssp TCCTTBCTTTCEEEEECCSSSSCSEEEEEEEE-BCH-HHH-HHTTCCSC--EEEEEEBHHHHHHHHTTCSCSHHHHSSSS T ss_pred CCCCCCCCCEEEEEEEEECCCCEEEEEECCCC-CCH-HHH-HHCCCCCC--EEEEEECHHHHHHHHCCCCHHHHHHCCCC T ss_conf 88899999657899997088981899957847-788-999-85697987--68987639999999729976776416755 No 11 >3k1z_A Haloacid dehalogenase-like hydrolase domain- containing protein 3; HDHD3, structural genomics, structural genomics consortium, SGC; 1.55A {Homo sapiens} Probab=88.87 E-value=0.6 Score=26.47 Aligned_cols=91 Identities=21% Similarity=0.278 Sum_probs=58.6 Q ss_pred HHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEE------ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEE Q ss_conf 8987448344016764155788765546677500114444557------5798335899999999981999621717988 Q gi|254780757|r 48 TTLRALGPLSWKAAYVQPSRRPLDGRYAENPNRLQHYYQFQVI------IKPNPLNLQNLYIESLKAVGIDPLIHDVRFV 121 (307) Q Consensus 48 T~lr~lg~~pw~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQVi------lKPsp~niq~lYl~SL~~iGid~~~hDIrFv 121 (307) .+|+.|..+-++++-+--+-+ .-+---.-..+.+|+-+-+. -||+| ++|..-|+.+|++| .++-|| T Consensus 113 ~~L~~L~~~g~~l~i~TN~~~--~~~~~l~~~gl~~~Fd~i~~s~~~g~~KP~p----~~f~~~l~~l~~~p--~~~l~V 184 (263) T 3k1z_A 113 DTLRECRTRGLRLAVISNFDR--RLEGILGGLGLREHFDFVLTSEAAGWPKPDP----RIFQEALRLAHMEP--VVAAHV 184 (263) T ss_dssp HHHHHHHHTTCEEEEEESCCT--THHHHHHHTTCGGGCSCEEEHHHHSSCTTSH----HHHHHHHHHHTCCG--GGEEEE T ss_pred HHHHHHHHCCCCEEEECCCCC--CHHHHHHCCCCCCCCCCCEEECCCCCCCCCH----HHHHHHHHHCCCCH--HHEEEE T ss_conf 999999977996577558531--0024442146543312001001169999798----99999999829997--687999 Q ss_pred ECCCCCCHHHHCCCCEE-EEECCEEE Q ss_conf 32888700110123217-68878741 Q gi|254780757|r 122 EDNWESPTLGAWGLGWE-CWCDGMEI 146 (307) Q Consensus 122 eDnWEsPtLGAwGlGWE-vwldGMEI 146 (307) .|+.++-..||...||. ||+++=+- T Consensus 185 GD~~~~Di~~A~~aG~~tv~v~~~~~ 210 (263) T 3k1z_A 185 GDNYLCDYQGPRAVGMHSFLVVGPQA 210 (263) T ss_dssp ESCHHHHTHHHHTTTCEEEEECCSSC T ss_pred EECCHHHHHHHHHCCCEEEEECCCCC T ss_conf 95878889999981998999821887 No 12 >1qq5_A Protein (L-2-haloacid dehalogenase); hydrolase; 1.52A {Xanthobacter autotrophicus} SCOP: c.108.1.1 PDB: 1qq6_A* 1qq7_A* 1aq6_A Probab=88.38 E-value=0.33 Score=28.34 Aligned_cols=44 Identities=30% Similarity=0.479 Sum_probs=38.0 Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEEC Q ss_conf 79833589999999998199962171798832888700110123217-6887 Q gi|254780757|r 92 KPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWCD 142 (307) Q Consensus 92 KPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vwld 142 (307) ||.| +.|+.-++.+|++|. ++-||+|+. +-..||-..||. ||++ T Consensus 147 KP~p----~~f~~a~~~lgv~p~--e~l~VgD~~-~dv~~A~~aG~~tv~v~ 191 (253) T 1qq5_A 147 KPHP----DSYALVEEVLGVTPA--EVLFVSSNG-FDVGGAKNFGFSVARVA 191 (253) T ss_dssp TTSH----HHHHHHHHHHCCCGG--GEEEEESCH-HHHHHHHHHTCEEEEEC T ss_pred CCCH----HHHHHHHHHHCCCHH--HEEEECCCH-HHHHHHHHCCCEEEEEC T ss_conf 9989----999999999587846--689882899-99999998599499982 No 13 >2om6_A Probable phosphoserine phosphatase; rossmann fold, B-hairpin, four-helix bundle, structural genomics, NPPSFA; 2.20A {Pyrococcus horikoshii OT3} Probab=86.68 E-value=0.94 Score=25.07 Aligned_cols=46 Identities=20% Similarity=0.442 Sum_probs=37.9 Q ss_pred ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEEC Q ss_conf 579833589999999998199962171798832888700110123217-6887 Q gi|254780757|r 91 IKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWCD 142 (307) Q Consensus 91 lKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vwld 142 (307) -||.|+ +|..-++.+|++| .++-||.|+.++--.||...||- ||++ T Consensus 157 ~KP~~~----~~~~~~~~~~~~p--~~~l~VGD~~~~Di~~A~~~G~~~i~v~ 203 (235) T 2om6_A 157 YKPRKE----MFEKVLNSFEVKP--EESLHIGDTYAEDYQGARKVGMWAVWIN 203 (235) T ss_dssp CTTCHH----HHHHHHHHTTCCG--GGEEEEESCTTTTHHHHHHTTSEEEEEC T ss_pred CCCCHH----HHHHHHHHHCCCH--HHEEEEEECCHHHHHHHHHCCCEEEEEC T ss_conf 787089----9999999929795--6858998474876999998699899989 No 14 >2gfh_A Haloacid dehalogenase-like hydrolase domain containing 4; 17391249, protein C20ORF147 homolog, structural genomics, PSI; 1.90A {Mus musculus} SCOP: c.108.1.6 PDB: 2w4m_A Probab=85.46 E-value=0.94 Score=25.08 Aligned_cols=48 Identities=25% Similarity=0.502 Sum_probs=39.3 Q ss_pred EECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE--EEECC Q ss_conf 7579833589999999998199962171798832888700110123217--68878 Q gi|254780757|r 90 IIKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE--CWCDG 143 (307) Q Consensus 90 ilKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE--vwldG 143 (307) .-||+|. +|..-++.+|++|. ++-||.|++++-..+|--.||. +|++. T Consensus 174 ~~KP~~~----~~~~~~~~~~~~~~--~~l~VGD~~~~Di~~A~~~G~~~~~~~~~ 223 (260) T 2gfh_A 174 EEKPAPS----IFYHCCDLLGVQPG--DCVMVGDTLETDIQGGLNAGLKATVWINK 223 (260) T ss_dssp SCTTCHH----HHHHHHHHHTCCGG--GEEEEESCTTTHHHHHHHTTCSEEEEECT T ss_pred CCCCCHH----HHHHHHHHCCCCCC--EEEEEEECCHHHHHHHHHCCCEEEEEECC T ss_conf 8898699----99999998098976--17999958587699999839929999779 No 15 >3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} Probab=85.10 E-value=0.41 Score=27.66 Aligned_cols=174 Identities=17% Similarity=0.123 Sum_probs=96.8 Q ss_pred HHHHHHHHHHHHCCCE-----EEECCCCCCCCCCCCHHHH-------------H-HHCCCCCCEEEEECCCCCCCCCCCC Q ss_conf 9999999999866958-----9611675433322485789-------------8-7448344016764155788765546 Q gi|254780757|r 15 NIILTLTQYWAQQGCT-----ILQPYDMEVGAGTFHPSTT-------------L-RALGPLSWKAAYVQPSRRPLDGRYA 75 (307) Q Consensus 15 ~ii~~L~~fW~~~GC~-----i~qpyd~e~GAgT~hp~T~-------------l-r~lg~~pw~~aYvqPsrRP~DgRYG 75 (307) .|+..+-+|..++|.+ ++++.+.|-||--|.+..| + +.+-.---++-.+-||.|.-+.+-. T Consensus 249 ~i~~~iR~ff~~~gFlEVeTPiL~~~~~eg~~~~f~~~~~~~~~yL~~SPel~~k~ll~~g~~rVfeI~~~FR~E~~~t~ 328 (548) T 3i7f_A 249 ACCGLFREFLTSQKFVEIHTPKLIGCSSEGGSNIFEVKYFDRKAYLAQSPQLYKQMAIMGDFRKVFEVGPVFRAENSNTR 328 (548) T ss_dssp HHHHHHHHHHHHTTCEECCCCSBC-------------------CCBCSCTHHHHHHHHTTTCCEEEEEEEECCCSCCCSS T ss_pred HHHHHHHHHHHHCCCEEEECCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCC T ss_conf 99999999999779989888721236767655600011111266763326789999986266323443405664545555 Q ss_pred CC-CCC--CCEEEE----EE------------------------------------EEECCCCHHHHHHHHHHHHHCCCC Q ss_conf 67-750--011444----45------------------------------------575798335899999999981999 Q gi|254780757|r 76 EN-PNR--LQHYYQ----FQ------------------------------------VIIKPNPLNLQNLYIESLKAVGID 112 (307) Q Consensus 76 eN-PNR--lq~y~Q----fQ------------------------------------VilKPsp~niq~lYl~SL~~iGid 112 (307) -+ |-= |--|.. |. .+.+|.+.-.-+--++-|+..|.. T Consensus 329 rHlpEFT~LE~e~a~~~~~~d~m~~~e~l~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~eai~~l~~~~~~ 408 (548) T 3i7f_A 329 RHLTEFEGLDIEMEIVENYHECIDVMEKLFTFIFDEIPKRFPDELKVIRKQYPFEDLIYRPFLRLTYKEAIEMLRASGET 408 (548) T ss_dssp SCCSCEEEEEEEEECSSCTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHSCCCCCCCCSCEEEEHHHHHHHHHHTTCC T ss_pred CCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCHHHCCHHHHHHHHHHHCCC T ss_conf 56875155010077898899999999999999999987646654321000255310135615435699999999972322 Q ss_pred CCC---------------------CCEEEEECCCC--CCH-------HHHCCCCEEEEECCEEEH-----------HHHH Q ss_conf 621---------------------71798832888--700-------110123217688787414-----------7778 Q gi|254780757|r 113 PLI---------------------HDVRFVEDNWE--SPT-------LGAWGLGWECWCDGMEIS-----------QFTY 151 (307) Q Consensus 113 ~~~---------------------hDIrFveDnWE--sPt-------LGAwGlGWEvwldGMEIt-----------QFTY 151 (307) ... .|.-||.|-.. +|- =..+...+|+.++|+||. |--- T Consensus 409 ~~~~~d~~~~~e~~l~~~i~~~~~~~~~~v~~~P~~~~pf~~~~~~~d~~~a~rfdL~i~G~Ei~nG~~rl~d~~~~~~r 488 (548) T 3i7f_A 409 IGDYDDFTTPQEVKLGELIKAKYNTDFYILDKFPAAIRPFYTMPDIDDPNYSNSYDVFVRGQEITSGAQRIHDPEFLMKR 488 (548) T ss_dssp CCTTCCCCHHHHHHHHHHHHHHHCCSEEEEECCBGGGSCTTBCBCSSCTTBBSEEEEEETTEEEEEEEEECCCHHHHHHH T ss_pred CCCHHHCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCCCCCCCCCEEEEEEEECCCEEEEEEEEECCCHHHHHHH T ss_conf 35211016389999888888751789889948726429766688999968346899872988971645541889999999 Q ss_pred HHHHCCCCC-------------CCCHHHHHHHHHHHHHHHCCCCCEEEEEE Q ss_conf 998668257-------------75145678789999999869982113320 Q gi|254780757|r 152 FQQVCGIEC-------------SPISGEITYGLERLAMYVQNVNSVYDIVF 189 (307) Q Consensus 152 FQQvGGi~c-------------~pv~~EiTYGLERiaMylQ~vdnvyDl~w 189 (307) |...| ++- -|.++-+.-|+|||.|.+.|.+||-|.+. T Consensus 489 ~~~~g-~~~~~~~~yl~al~~G~PP~gG~glGlDRLvmll~g~~~Irdvi~ 538 (548) T 3i7f_A 489 CIEKG-VDPATLKDYIESFRFGSWPHAGCGIGLERITMLYLGIPNIRKVTL 538 (548) T ss_dssp HHHTT-CCGGGGHHHHHTTSSCCCCEEEEEEEHHHHHHHHTTCSCGGGGSS T ss_pred HHHCC-CCHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHCCCCCHHEEEC T ss_conf 99859-998999999999657999861465389999999818983775861 No 16 >1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 Probab=84.51 E-value=0.49 Score=27.13 Aligned_cols=55 Identities=18% Similarity=0.201 Sum_probs=32.3 Q ss_pred CCCCEEEEECCEEEH-----------HHHHHHHHCCCCC-------------CCCHHHHHHHHHHHHHHHCCCCCEEEEE Q ss_conf 123217688787414-----------7778998668257-------------7514567878999999986998211332 Q gi|254780757|r 133 WGLGWECWCDGMEIS-----------QFTYFQQVCGIEC-------------SPISGEITYGLERLAMYVQNVNSVYDIV 188 (307) Q Consensus 133 wGlGWEvwldGMEIt-----------QFTYFQQvGGi~c-------------~pv~~EiTYGLERiaMylQ~vdnvyDl~ 188 (307) ...-+|+.++|+||. |..-|..-|. +- -|.++-+.-|+|||.|.+-|.+||-|.+ T Consensus 333 ~a~rfeL~~~G~El~nG~~el~d~~e~~~~~~~~g~-~~e~~~~fl~al~~G~PP~~G~glGiDRLvm~l~g~~~Irdvi 411 (422) T 1n9w_A 333 TTRSFDLLFRGLEITSGGQRIHRYEELLESLKAKGM-DPEAFHGYLEVFKYGMPPHGGFAIGAERLTQKLLGLPNVRYAR 411 (422) T ss_dssp BBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHTTC-CGGGGHHHHGGGGBCCCSEEEEEEEHHHHHHHHTTCSSGGGGC T ss_pred CEEEEEEEECCEEEEECCCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHCCCCCHHEEE T ss_conf 535654558789998012113689999999987498-9899999999966399997457669999999980898676264 No 17 >1x42_A Hypothetical protein PH0459; haloacid dehalogenase, structural genomics, NPPSFA; 2.00A {Pyrococcus horikoshii OT3} SCOP: c.108.1.1 Probab=83.92 E-value=1.7 Score=23.29 Aligned_cols=47 Identities=28% Similarity=0.422 Sum_probs=38.5 Q ss_pred ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEECC Q ss_conf 579833589999999998199962171798832888700110123217-68878 Q gi|254780757|r 91 IKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWCDG 143 (307) Q Consensus 91 lKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vwldG 143 (307) -||+| +.|..-++.+|++| .++-+|+|+=++-..+|.-+||- ||++. T Consensus 154 ~KP~~----~~~~~~~~~l~~~p--~~~l~vgD~~~~Di~~A~~~G~~~v~v~~ 201 (232) T 1x42_A 154 FKPHP----RIFELALKKAGVKG--EEAVYVGDNPVKDCGGSKNLGMTSILLDR 201 (232) T ss_dssp CTTSH----HHHHHHHHHHTCCG--GGEEEEESCTTTTHHHHHTTTCEEEEECT T ss_pred CCCCH----HHHHHHHHHCCCCH--HHCEEEEECCHHHHHHHHHCCCEEEEECC T ss_conf 89859----99999999919998--89817765758659999986998999889 No 18 >3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis} Probab=83.10 E-value=1.6 Score=23.30 Aligned_cols=51 Identities=20% Similarity=0.354 Sum_probs=41.2 Q ss_pred EEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEEC Q ss_conf 44557579833589999999998199962171798832888700110123217-6887 Q gi|254780757|r 86 QFQVIIKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWCD 142 (307) Q Consensus 86 QfQVilKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vwld 142 (307) ...++-||+|. .|...++.+||+|. ++-+|-|++++--.||--.|+- ||.. T Consensus 177 ~~~~~~KP~~~----~~~~a~~~lgi~pe--~~l~IGD~~~~DI~~a~~aG~~si~V~ 228 (266) T 3pdw_A 177 QPVFIGKPESI----IMEQAMRVLGTDVS--ETLMVGDNYATDIMAGINAGMDTLLVH 228 (266) T ss_dssp CCEECSTTSSH----HHHHHHHHHTCCGG--GEEEEESCTTTHHHHHHHHTCEEEEEC T ss_pred CCEEECCCCHH----HHHHHHHHHCCCCC--CEEEECCCCHHHHHHHHHCCCCEEEEC T ss_conf 41231376347----89998988514754--369982581778999998799699989 No 19 >2oyc_A PLP phosphatase, pyridoxal phosphate phosphatase; structural genomics, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI-2; 1.72A {Homo sapiens} PDB: 2p27_A 2p69_A* 2cft_A* 2cfs_A 2cfr_A* Probab=83.05 E-value=1.7 Score=23.25 Aligned_cols=46 Identities=24% Similarity=0.293 Sum_probs=38.2 Q ss_pred EECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEEEEE Q ss_conf 7579833589999999998199962171798832888700110123217688 Q gi|254780757|r 90 IIKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWECWC 141 (307) Q Consensus 90 ilKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWEvwl 141 (307) .=||+|. .|..-++.+|++|. ++-+|.|+.++--+||--.||...+ T Consensus 213 ~GKP~p~----~~~~a~~~lgv~p~--e~lmVGD~~~tDI~gA~~aG~~sil 258 (306) T 2oyc_A 213 VGKPSPY----MFECITENFSIDPA--RTLMVGDRLETDILFGHRCGMTTVL 258 (306) T ss_dssp CSTTSTH----HHHHHHHHSCCCGG--GEEEEESCTTTHHHHHHHHTCEEEE T ss_pred CCCCCHH----HHHHHHHHCCCCCC--CEEEEECCCHHHHHHHHHCCCCEEE T ss_conf 1578627----89999986399957--7899917860789999987995999 No 20 >1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* Probab=82.86 E-value=0.4 Score=27.74 Aligned_cols=59 Identities=24% Similarity=0.413 Sum_probs=44.1 Q ss_pred HHCCCCEEEEECCEEEH-----------HHHHHHHHCCCC----------C------CCCHHHHHHHHHHHHHHHCCCCC Q ss_conf 10123217688787414-----------777899866825----------7------75145678789999999869982 Q gi|254780757|r 131 GAWGLGWECWCDGMEIS-----------QFTYFQQVCGIE----------C------SPISGEITYGLERLAMYVQNVNS 183 (307) Q Consensus 131 GAwGlGWEvwldGMEIt-----------QFTYFQQvGGi~----------c------~pv~~EiTYGLERiaMylQ~vdn 183 (307) ....-.+++-++|+||. |-.-|.+.|--+ + -|..+-+--|+|||.|++-|.+| T Consensus 468 ~~~~~~fDL~~~G~Ei~~Gs~R~~d~~~q~~~~~~~g~~~~e~~~~~~~yl~a~~yG~PPhgG~GlG~DRLvm~ltg~~n 547 (585) T 1c0a_A 468 NAVANAYDMVINGYEVGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYGTPPHAGLAFGLDRLTMLLTGTDN 547 (585) T ss_dssp TCBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTTCCCEEEEEEEHHHHHHHHHTCSC T ss_pred CCEEEEEEEECCCEEECCCHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHCCCCC T ss_conf 64168886402888972401011799999999998599956865579999999766999876274189999999809995 Q ss_pred EEEEEE Q ss_conf 113320 Q gi|254780757|r 184 VYDIVF 189 (307) Q Consensus 184 vyDl~w 189 (307) |-|.+- T Consensus 548 IRDvi~ 553 (585) T 1c0a_A 548 IRDVIA 553 (585) T ss_dssp GGGGSS T ss_pred HHEEEC T ss_conf 760751 No 21 >1e1o_A Lysyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A Probab=82.68 E-value=0.24 Score=29.31 Aligned_cols=57 Identities=25% Similarity=0.404 Sum_probs=37.8 Q ss_pred CCCCEEEEECCEEEH-----------HHHHHHHH------CCCCC--------------CCCHHHHHHHHHHHHHHHCCC Q ss_conf 123217688787414-----------77789986------68257--------------751456787899999998699 Q gi|254780757|r 133 WGLGWECWCDGMEIS-----------QFTYFQQV------CGIEC--------------SPISGEITYGLERLAMYVQNV 181 (307) Q Consensus 133 wGlGWEvwldGMEIt-----------QFTYFQQv------GGi~c--------------~pv~~EiTYGLERiaMylQ~v 181 (307) ..-.+++-++|+||. |-..|++. |.-+- -|..+-+..|||||.|++-|. T Consensus 409 ~~~~fdl~~~G~Ei~~G~~ri~d~~~q~~~~~~~~~~~~~~~~~~~~~de~yl~a~~yG~pPhgG~glGldRlvm~l~g~ 488 (504) T 1e1o_A 409 ITDRFEFFIGGREIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPTAGLGIGIDRMIMLFTNS 488 (504) T ss_dssp BBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTTCCCCCHHHHHHHHHHCCSEEEEEEEHHHHHHHHHTC T ss_pred HHEEEEEEECCEEEEECEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHCC T ss_conf 61067775488998643152579999999999999987548660223038999996479998600368899999998269 Q ss_pred CCEEEEEE Q ss_conf 82113320 Q gi|254780757|r 182 NSVYDIVF 189 (307) Q Consensus 182 dnvyDl~w 189 (307) +||-|.+- T Consensus 489 ~nIRdvi~ 496 (504) T 1e1o_A 489 HTIRDVIL 496 (504) T ss_dssp SSGGGTSS T ss_pred CHHHHEEC T ss_conf 70885316 No 22 >1ses_A Seryl-tRNA synthetase; ligase(synthetase); HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A Probab=82.65 E-value=1.5 Score=23.54 Aligned_cols=86 Identities=16% Similarity=0.150 Sum_probs=58.6 Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEE-----EEECCCCHHHHHH-------HHHHHHHCCCCCCCCCEEEEEC Q ss_conf 440167641557887655466775001144445-----5757983358999-------9999998199962171798832 Q gi|254780757|r 56 LSWKAAYVQPSRRPLDGRYAENPNRLQHYYQFQ-----VIIKPNPLNLQNL-------YIESLKAVGIDPLIHDVRFVED 123 (307) Q Consensus 56 ~pw~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQ-----VilKPsp~niq~l-------Yl~SL~~iGid~~~hDIrFveD 123 (307) -|.+.+-.-||+|-..|.||...--|.+-|||. ++..++|++..+. +-.-++.|||.. .-= T Consensus 244 LPlr~~~~s~cfR~EaGs~GkdtrGl~RvhQF~kvE~~~~~~~~~e~s~~~~~~~~~~~~~i~~~L~lpy-------rvv 316 (421) T 1ses_A 244 LPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELPY-------RLV 316 (421) T ss_dssp CSEEEEEEEEEECCCCSCCCSCCCTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCE-------EEE T ss_pred CCCEEEEECCCCCCCCCCCCCCHHHHHHHEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCC-------HHH T ss_conf 5732577447532223344521034433102455777786145430246799999999999986226731-------102 Q ss_pred CCCCCHHHHCC---CCEEEEECC----EEEHH Q ss_conf 88870011012---321768878----74147 Q gi|254780757|r 124 NWESPTLGAWG---LGWECWCDG----MEISQ 148 (307) Q Consensus 124 nWEsPtLGAwG---lGWEvwldG----MEItQ 148 (307) ++.+--||++. .--|||+-| .||+- T Consensus 317 ~~~~~dlg~~a~~~~diE~w~P~~~~~~Evss 348 (421) T 1ses_A 317 EVATGDMGPGKWRQVDIEVYLPSEGRYRETHS 348 (421) T ss_dssp ECCHHHHCTTCSEEEEEEEEETTTTEEEEEEE T ss_pred HCCCCCCCHHHHHHCCEEEEECCCCCEEEEEE T ss_conf 22755677587632140788648896787821 No 23 >2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A* Probab=82.04 E-value=2.9 Score=21.49 Aligned_cols=169 Identities=17% Similarity=0.242 Sum_probs=97.7 Q ss_pred CHHHHHHHHHHHHHHCCCEEEECCCCCC--------CCCCCCHH---------------------HHHHHC----CCCCC Q ss_conf 7999999999999866958961167543--------33224857---------------------898744----83440 Q gi|254780757|r 12 SFQNIILTLTQYWAQQGCTILQPYDMEV--------GAGTFHPS---------------------TTLRAL----GPLSW 58 (307) Q Consensus 12 ~fq~ii~~L~~fW~~~GC~i~qpyd~e~--------GAgT~hp~---------------------T~lr~l----g~~pw 58 (307) -...+|-.+.+++...|..+...-.+|- ...--||| .-.|.| ++.|. T Consensus 54 Pl~~~~~~I~~if~~mGF~~~~gpeIe~~~~NFdaLniP~dHPARd~~DTfYi~~~~lLRtHTS~~q~r~l~~~~~~~p~ 133 (294) T 2rhq_A 54 PLTRTVEEIEDLFLGLGYEIVDGYEVEQDYYNFEALNLPKSHPARDMQDSFYITDEILMRTHTSPVQARTMEKRNGQGPV 133 (294) T ss_dssp HHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTGGGTCCTTCGGGCTTTSCBSSSSEEECSSSHHHHHHHHHHTTTCSCE T ss_pred HHHHHHHHHHHHHHHCCCEEEECCEEECCHHHHHHHCCCCCCHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCE T ss_conf 59999999999997789716458841043057663488998302040451885035203776807789999851568983 Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEC---CCCHHHHHHHHHHHHHCCCCCCCCCEE-------EEECCCCCC Q ss_conf 1676415578876554667750011444455757---983358999999999819996217179-------883288870 Q gi|254780757|r 59 KAAYVQPSRRPLDGRYAENPNRLQHYYQFQVIIK---PNPLNLQNLYIESLKAVGIDPLIHDVR-------FVEDNWESP 128 (307) Q Consensus 59 ~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQVilK---Psp~niq~lYl~SL~~iGid~~~hDIr-------FveDnWEsP 128 (307) ++.++-.|.|... .....+-.+||.--++- .+-.|....--.-++.++- .+..+| |+|-.||-- T Consensus 134 ~~~~~G~VyRrD~----iDatH~p~FhQ~Eg~~v~~~~~~~~Lk~~l~~f~~~~f~--~~~~~r~rpsyFPfTePs~Evd 207 (294) T 2rhq_A 134 KIICPGKVYRRDS----DDATHSHQFTQIEGLVVDKNIKMSDLKGTLELVAKKLFG--ADREIRLRPSYFPFTEPSVEVD 207 (294) T ss_dssp EEEEEEEEECCCC----CBTTBCSEEEEEEEEEEESSCCHHHHHHHHHHHHHHHHC--TTCCEEEEECCBTTEEEEEEEE T ss_pred EEEECCCEEECCC----CCHHHCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCC--CCCEEEECCCCCCCCCCCCEEE T ss_conf 8984684772687----873442222230159964787776644378899998706--7745897446585458862267 Q ss_pred HH----------HHCCCCEEEEE-CCEEEHHHHHHHHHCCCCCCCCHH-HHHHHHHHHHHHHCCCCCEEEEEEC Q ss_conf 01----------10123217688-787414777899866825775145-6787899999998699821133206 Q gi|254780757|r 129 TL----------GAWGLGWECWC-DGMEISQFTYFQQVCGIECSPISG-EITYGLERLAMYVQNVNSVYDIVFN 190 (307) Q Consensus 129 tL----------GAwGlGWEvwl-dGMEItQFTYFQQvGGi~c~pv~~-EiTYGLERiaMylQ~vdnvyDl~wn 190 (307) .- --|+-||-=++ -||==-. .+ ...|+|-+..+| -.--|||||||-+-+++++-++ |+ T Consensus 208 v~~~~~~g~~~~v~~~~~WlEi~G~Gmv~P~--VL-~~~Gid~~~~~G~AfGlGlERlAMl~~gI~DIR~f-~~ 277 (294) T 2rhq_A 208 VSCFKCKGKGCNVCKHTGWIEILGAGMVHPN--VL-EMAGFDSNEYSGFAFGMGPDRIAMLKYGIEDIRYF-YT 277 (294) T ss_dssp EECSSSTTSCCTTTTTSSEEEEEEEEEECHH--HH-HTTTCCTTTCEEEEEEECHHHHHHHHHTCCCTTHH-HH T ss_pred EEEECCCCCCCEECCCCCCEEEEEECCCCHH--HH-HHCCCCCCCCEEEEEEECHHHHHHHHCCCCHHHHH-HH T ss_conf 7762048987414058874688630342789--99-97299967787999863388999998399758877-62 No 24 >3ed5_A YFNB; APC60080, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.72A {Bacillus subtilis} PDB: 3i76_A Probab=81.92 E-value=1.8 Score=22.96 Aligned_cols=88 Identities=11% Similarity=0.172 Sum_probs=57.6 Q ss_pred HHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEE------ECCCCHHHHHHHHHHHHHC-CCCCCCCCEE Q ss_conf 78987448344016764155788765546677500114444557------5798335899999999981-9996217179 Q gi|254780757|r 47 STTLRALGPLSWKAAYVQPSRRPLDGRYAENPNRLQHYYQFQVI------IKPNPLNLQNLYIESLKAV-GIDPLIHDVR 119 (307) Q Consensus 47 ~T~lr~lg~~pw~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQVi------lKPsp~niq~lYl~SL~~i-Gid~~~hDIr 119 (307) ..+|+.|..+ .+.+.+--+.+.. .+.--+...+.+|+.+.+. -||+|+ +|...++.+ |++| .++- T Consensus 109 ~~~l~~l~~~-~~~~~~tn~~~~~-~~~~l~~~~l~~~fd~i~~s~~~~~~KP~~~----~f~~~~~~l~~~~p--~~~l 180 (238) T 3ed5_A 109 FDLISNLQQQ-FDLYIVTNGVSHT-QYKRLRDSGLFPFFKDIFVSEDTGFQKPMKE----YFNYVFERIPQFSA--EHTL 180 (238) T ss_dssp HHHHHHHHTT-SEEEEEECSCHHH-HHHHHHHTTCGGGCSEEEEGGGTTSCTTCHH----HHHHHHHTSTTCCG--GGEE T ss_pred HHHHHHHHHC-CCEEEECCCCHHH-HHHHHHHHHHCCCCCCCCCHHHCCCCCCCHH----HHHHHHHHHCCCCC--CCEE T ss_conf 9999999838-9876543888999-9999986232000122211010036797199----99999998447898--8679 Q ss_pred EEECCCCCCHHHHCCCCEE-EEEC Q ss_conf 8832888700110123217-6887 Q gi|254780757|r 120 FVEDNWESPTLGAWGLGWE-CWCD 142 (307) Q Consensus 120 FveDnWEsPtLGAwGlGWE-vwld 142 (307) ||.|+.++--.||...||. ||++ T Consensus 181 ~vGD~~~~Di~~A~~~G~~ti~v~ 204 (238) T 3ed5_A 181 IIGDSLTADIKGGQLAGLDTCWMN 204 (238) T ss_dssp EEESCTTTTHHHHHHTTCEEEEEC T ss_pred EEEECCHHHHHHHHHCCCEEEEEC T ss_conf 999796887999998499799989 No 25 >2pke_A Haloacid delahogenase-like family hydrolase; NP_639141.1, structural genomics, joint center for structural genomics, JCSG; 1.81A {Xanthomonas campestris PV} Probab=81.60 E-value=2.5 Score=21.96 Aligned_cols=53 Identities=9% Similarity=0.152 Sum_probs=41.0 Q ss_pred EEEEEEEEE-CCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEEEEE Q ss_conf 144445575-79833589999999998199962171798832888700110123217688 Q gi|254780757|r 83 HYYQFQVII-KPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWECWC 141 (307) Q Consensus 83 ~y~QfQVil-KPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWEvwl 141 (307) .|+.+.+.. ||.|+ .|..-++..|++| +++-+|+|+.++-..||--+|+..+. T Consensus 152 ~~fd~~~~~~kP~p~----~~~~~l~~~~~~p--~e~l~VGDs~~~Di~~A~~aG~~~v~ 205 (251) T 2pke_A 152 DLFPRIEVVSEKDPQ----TYARVLSEFDLPA--ERFVMIGNSLRSDVEPVLAIGGWGIY 205 (251) T ss_dssp GTCCCEEEESCCSHH----HHHHHHHHHTCCG--GGEEEEESCCCCCCHHHHHTTCEEEE T ss_pred CCCHHHHHHCCCCHH----HHHHHHHHCCCCC--CCEEEEEECCHHHHHHHHHHCCEEEE T ss_conf 530567640345718----9999998636678--74799985878889999991997999 No 26 >2no4_A (S)-2-haloacid dehalogenase IVA; HAD superfamily, rossman fold, hydrolase; 1.93A {Burkholderia cepacia} PDB: 2no5_A* Probab=81.53 E-value=1 Score=24.75 Aligned_cols=46 Identities=28% Similarity=0.502 Sum_probs=38.6 Q ss_pred ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEECC Q ss_conf 579833589999999998199962171798832888700110123217-68878 Q gi|254780757|r 91 IKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWCDG 143 (307) Q Consensus 91 lKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vwldG 143 (307) .||+|. +|..-++.+|++| +++-||+|. .+-..+|.-.||- ||++. T Consensus 160 ~KP~p~----~~~~~~~~lg~~p--~e~l~IgDs-~~Di~aA~~aG~~~v~v~~ 206 (240) T 2no4_A 160 YKPDPR----IYQFACDRLGVNP--NEVCFVSSN-AWDLGGAGKFGFNTVRINR 206 (240) T ss_dssp CTTSHH----HHHHHHHHHTCCG--GGEEEEESC-HHHHHHHHHHTCEEEEECT T ss_pred CCCCHH----HHHHHHHHHCCCC--CCEEEEECC-HHHHHHHHHCCCEEEEECC T ss_conf 413499----9999999909691--628999888-8889999993996999888 No 27 >1zrn_A L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseudomonas SP} SCOP: c.108.1.1 PDB: 1zrm_A 1jud_A 1qh9_A Probab=80.75 E-value=0.96 Score=25.02 Aligned_cols=45 Identities=31% Similarity=0.606 Sum_probs=38.2 Q ss_pred ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEEC Q ss_conf 579833589999999998199962171798832888700110123217-6887 Q gi|254780757|r 91 IKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWCD 142 (307) Q Consensus 91 lKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vwld 142 (307) .||+| +.|..-++.+|++| +++-||+|+. +-..||--+||- ||++ T Consensus 150 ~KP~p----~~f~~~~~~l~~~p--~~~l~VgDs~-~Di~~A~~aG~~~v~v~ 195 (232) T 1zrn_A 150 YKPDN----RVYELAEQALGLDR--SAILFVASNA-WDATGARYFGFPTCWIN 195 (232) T ss_dssp CTTSH----HHHHHHHHHHTSCG--GGEEEEESCH-HHHHHHHHHTCCEEEEC T ss_pred CCCCH----HHHHHHHHHHCCCC--CCEEEEECCH-HHHHHHHHCCCEEEEEE T ss_conf 58977----88889999809793--0189896899-99999998499699980 No 28 >1yv9_A Hydrolase, haloacid dehalogenase family; hypothetical protein, structural genomics, PSI, protein structure initiative; 2.80A {Enterococcus faecalis V583} SCOP: c.108.1.14 Probab=80.46 E-value=2 Score=22.77 Aligned_cols=44 Identities=20% Similarity=0.379 Sum_probs=36.8 Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEEEEE Q ss_conf 79833589999999998199962171798832888700110123217688 Q gi|254780757|r 92 KPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWECWC 141 (307) Q Consensus 92 KPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWEvwl 141 (307) ||+|. .|...++.+||+|. ++-+|-|++++--.||--.|+-..+ T Consensus 183 KP~~~----~~~~a~~~~gi~p~--~~l~IGD~~~~Di~~A~~aG~~si~ 226 (264) T 1yv9_A 183 KPKAI----IMERAIAHLGVEKE--QVIMVGDNYETDIQSGIQNGIDSLL 226 (264) T ss_dssp TTSHH----HHHHHHHHHCSCGG--GEEEEESCTTTHHHHHHHHTCEEEE T ss_pred CCCHH----HHHHHHHHHCCCCC--EEEEEECCCHHHHHHHHHCCCCEEE T ss_conf 78778----88788998489967--4999928836899999987998999 No 29 >1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A Probab=79.44 E-value=3.6 Score=20.89 Aligned_cols=58 Identities=24% Similarity=0.411 Sum_probs=41.7 Q ss_pred HCCCCEEEEECCEEEH-----------HHHHHHHHCCCC----------------CCCCHHHHHHHHHHHHHHHCCCCCE Q ss_conf 0123217688787414-----------777899866825----------------7751456787899999998699821 Q gi|254780757|r 132 AWGLGWECWCDGMEIS-----------QFTYFQQVCGIE----------------CSPISGEITYGLERLAMYVQNVNSV 184 (307) Q Consensus 132 AwGlGWEvwldGMEIt-----------QFTYFQQvGGi~----------------c~pv~~EiTYGLERiaMylQ~vdnv 184 (307) .+...++..++|+||. |---|...|--+ =-|..+-+--|+|||.|++-|++|| T Consensus 463 ~~a~~fDLv~~G~El~gGsqR~~d~~~q~~~~~~~gl~~~e~~~~~~~yld~~~yG~pPhgGfGlG~dRLvm~ltg~~nI 542 (580) T 1l0w_A 463 VRALAYDLVLNGVEVGGGSIRIHDPRLQARVFRLLGIGEEEQREKFGFFLEALEYGAPPHGGIAWGLDRLLALMTGSPSI 542 (580) T ss_dssp CBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHTCCTTTHHHHTHHHHHHTTBTCCCEEEEEEEHHHHHHHHHTCSSG T ss_pred CCEEEEEECCCCEEEEECEEECCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHCCCCH T ss_conf 71259997148789702626337999999999983799056676799999997769998763655899999998089966 Q ss_pred EEEEE Q ss_conf 13320 Q gi|254780757|r 185 YDIVF 189 (307) Q Consensus 185 yDl~w 189 (307) -|.+= T Consensus 543 Rdvi~ 547 (580) T 1l0w_A 543 REVIA 547 (580) T ss_dssp GGGSS T ss_pred HEEEC T ss_conf 63866 No 30 >1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, ligase; HET: EPE; 2.30A {Sulfolobus tokodaii str} Probab=79.14 E-value=1 Score=24.82 Aligned_cols=65 Identities=14% Similarity=0.122 Sum_probs=39.2 Q ss_pred HHHHHHHHHHHHCCCEEEE-----CCCCCCCCCCC-------------CHHHHHHHCCCCCCEEEEECCCCCCCCCCCC- Q ss_conf 9999999999866958961-----16754333224-------------8578987448344016764155788765546- Q gi|254780757|r 15 NIILTLTQYWAQQGCTILQ-----PYDMEVGAGTF-------------HPSTTLRALGPLSWKAAYVQPSRRPLDGRYA- 75 (307) Q Consensus 15 ~ii~~L~~fW~~~GC~i~q-----pyd~e~GAgT~-------------hp~T~lr~lg~~pw~~aYvqPsrRP~DgRYG- 75 (307) .|+..+-+|..++|.+=.. ..+.|-||--| .|..+.+.+-.--=++-.+-||.|.-+++-- T Consensus 139 ~i~~~iR~f~~~~gf~EV~TP~L~~~~~~g~a~~f~~~~~~~~~~L~~Spel~K~l~~~g~~rvf~i~~~FR~E~~~~~r 218 (429) T 1wyd_A 139 LALKAFRETLYKEGFIEIFTPKIIASATEGGAQLFPVIYFGKEAFLAQSPQLYKELMAGVVERVFEVAPAWRAEESDTPF 218 (429) T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESSCSSTTCCCCEEEETTEEEEECSCCHHHHHHHHHHHSEEEEEEEEECCCCCCSSS T ss_pred HHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCEECCCHHHHHHHHHHHHCCEEEEECCCCCCCCCCCC T ss_conf 99999998777438555338643466676422344105159772430389988888653110006750320036787643 Q ss_pred CCCC Q ss_conf 6775 Q gi|254780757|r 76 ENPN 79 (307) Q Consensus 76 eNPN 79 (307) .||- T Consensus 219 H~pE 222 (429) T 1wyd_A 219 HLAE 222 (429) T ss_dssp CCSE T ss_pred CCCC T ss_conf 4566 No 31 >3ddh_A Putative haloacid dehalogenase-like family hydrolase; HAD superfamily, structural genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides thetaiotaomicron} Probab=79.10 E-value=2 Score=22.69 Aligned_cols=50 Identities=18% Similarity=0.262 Sum_probs=41.5 Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEEC Q ss_conf 4557579833589999999998199962171798832888700110123217-6887 Q gi|254780757|r 87 FQVIIKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWCD 142 (307) Q Consensus 87 fQVilKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vwld 142 (307) .-..-||.|+ .|..-++.+|++| .++-||.|++++-..||..+||. ||++ T Consensus 152 ~~~~~k~~p~----~~~~~~~~~~~~p--~e~l~VGDs~~~Di~~A~~~G~~~i~v~ 202 (234) T 3ddh_A 152 IEVMSDKTEK----EYLRLLSILQIAP--SELLMVGNSFKSDIQPVLSLGGYGVHIP 202 (234) T ss_dssp EEEESCCSHH----HHHHHHHHHTCCG--GGEEEEESCCCCCCHHHHHHTCEEEECC T ss_pred EECCCCCCCH----HHHHHHHHHCCCC--CEEEEEECCCHHHHHHHHHCCCEEEEEC T ss_conf 0104458928----9999999822137--2389995184767999998499899988 No 32 >2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2} Probab=77.08 E-value=4.1 Score=20.42 Aligned_cols=125 Identities=21% Similarity=0.300 Sum_probs=67.6 Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEE-CC--CCHHHHHHHHHHHHHCCCCCCCCCEEEEECC----C Q ss_conf 483440167641557887655466775001144445575-79--8335899999999981999621717988328----8 Q gi|254780757|r 53 LGPLSWKAAYVQPSRRPLDGRYAENPNRLQHYYQFQVII-KP--NPLNLQNLYIESLKAVGIDPLIHDVRFVEDN----W 125 (307) Q Consensus 53 lg~~pw~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQVil-KP--sp~niq~lYl~SL~~iGid~~~hDIrFveDn----W 125 (307) -+++|.+.-.+-.|.|+... +....+-.++|.--++ .. +-.+.......-|+.+|+. +++|.-+. + T Consensus 220 r~~~pirlFEiGrVFR~D~~---~D~tH~~~fhQleGlivg~~vdf~dLKg~le~lL~~Lg~~----~~k~r~~~s~~Pf 292 (648) T 2odr_B 220 KKPLPFKLFSIDRCFRREQK---EDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQFGFT----NFKFIPDEKKSKY 292 (648) T ss_dssp TSCSCEEEEEEEEEECCCSC---CCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTTTCC----CEEEEECTTCCTT T ss_pred CCCCCEEEEEEEEEECCCCC---CCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCC----CCEEEECCCCCCC T ss_conf 79998389987778737874---4243576200478999778768899999999999996788----7389965677899 Q ss_pred CCCHHHH-------CCCCEE-EEECCEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEE Q ss_conf 8700110-------123217-688787414777899866825775145678789999999869982113320 Q gi|254780757|r 126 ESPTLGA-------WGLGWE-CWCDGMEISQFTYFQQVCGIECSPISGEITYGLERLAMYVQNVNSVYDIVF 189 (307) Q Consensus 126 EsPtLGA-------wGlGWE-vwldGMEItQFTYFQQvGGi~c~pv~~EiTYGLERiaMylQ~vdnvyDl~w 189 (307) =.|...| ++-||= |=-=||==- .-. .-.||+..... .--|||||||..-+++++-++.. T Consensus 293 ~hPg~ea~V~~~~~~~~~WlEIgg~G~vHP--~VL-k~~GId~~V~A--FGLGLERLAMlk~gi~DIR~l~~ 359 (648) T 2odr_B 293 YTPETQTEVYAYHPKLKEWLEVATFGVYSP--VAL-SKYGIDVPVMN--LGLGVERLAMISGNFADVREMVY 359 (648) T ss_dssp BCTTCCEEEEEEETTTTEEEEEEEEEEBCH--HHH-HHTTCCSCEEE--EEEEHHHHHHHHTTCSCHHHHHC T ss_pred CCCCEEEEEEEEECCCCEEEEEEECCCCCH--HHH-HHCCCCCCEEE--EEECHHHHHHHHCCCCHHHHHHC T ss_conf 899115899998167984899980653179--999-86696985799--99638999998739973777607 No 33 >3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydrolase., PSI-2; 1.55A {Streptococcus agalactiae serogroup V} PDB: 1ys9_A 1wvi_A 1ydf_A Probab=76.39 E-value=2.9 Score=21.52 Aligned_cols=48 Identities=19% Similarity=0.276 Sum_probs=38.3 Q ss_pred EEEECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEE Q ss_conf 557579833589999999998199962171798832888700110123217-688 Q gi|254780757|r 88 QVIIKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWC 141 (307) Q Consensus 88 QVilKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vwl 141 (307) ..+-||+|. .|..-|+.+||+| .++-+|.|++++--+||--.||- ||. T Consensus 178 ~~~~KP~~~----~~~~~l~~~gi~~--~~~l~IGD~l~~DI~~a~~aG~~silV 226 (264) T 3epr_A 178 VFIGKPNAI----IMNKALEILNIPR--NQAVMVGDNYLTDIMAGINNDIDTLLV 226 (264) T ss_dssp EECSTTSHH----HHHHHHHHHTSCG--GGEEEEESCTTTHHHHHHHHTCEEEEE T ss_pred EEECCCCHH----HHHHHHHHHCCCC--CCEEEEECCCHHHHHHHHHCCCCEEEE T ss_conf 653265216----6788899729593--638999589378999999879989998 No 34 >3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism, cytoplasm, detoxification, magnesium, metal-binding, peroxisome, polymorphism; HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P* 1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* Probab=74.70 E-value=1.7 Score=23.17 Aligned_cols=87 Identities=18% Similarity=0.241 Sum_probs=53.5 Q ss_pred HHHHHCCCCCCEEEEECCCCCCCCCCCCCCC---CCCCEEEEEEE------EECCCCHHHHHHHHHHHHHCCCCCCCCCE Q ss_conf 8987448344016764155788765546677---50011444455------75798335899999999981999621717 Q gi|254780757|r 48 TTLRALGPLSWKAAYVQPSRRPLDGRYAENP---NRLQHYYQFQV------IIKPNPLNLQNLYIESLKAVGIDPLIHDV 118 (307) Q Consensus 48 T~lr~lg~~pw~~aYvqPsrRP~DgRYGeNP---NRlq~y~QfQV------ilKPsp~niq~lYl~SL~~iGid~~~hDI 118 (307) ..|+.|-.+-.+++-+--+......+....- -.+..|+-+-| +-||.| ++|+..++.+|++| .++ T Consensus 107 ~~l~~l~~~g~~l~i~SN~~~~~~~~~~~~~~~~~~l~~~Fd~i~~S~~vg~~KPdp----~iy~~a~~~lg~~p--~e~ 180 (555) T 3i28_A 107 QAALMLRKKGFTTAILTNTWLDDRAERDGLAQLMCELKMHFDFLIESCQVGMVKPEP----QIYKFLLDTLKASP--SEV 180 (555) T ss_dssp HHHHHHHHTTCEEEEEECCCCCCSTTHHHHHHHHHHHHTTSSEEEEHHHHTCCTTCH----HHHHHHHHHHTCCG--GGE T ss_pred HHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCHHHHCCEEEEHHCCCCCCCCH----HHHHHHHHHHCCCH--HHE T ss_conf 999999978994999849974236989887652212687688998830268899999----99999999829986--568 Q ss_pred EEEECCCCCCHHHHCCCCEEEEE Q ss_conf 98832888700110123217688 Q gi|254780757|r 119 RFVEDNWESPTLGAWGLGWECWC 141 (307) Q Consensus 119 rFveDnWEsPtLGAwGlGWEvwl 141 (307) -||+|.-++ -.||..+|+..-+ T Consensus 181 l~v~D~~~~-i~~A~~~G~~~i~ 202 (555) T 3i28_A 181 VFLDDIGAN-LKPARDLGMVTIL 202 (555) T ss_dssp EEEESCHHH-HHHHHHHTCEEEE T ss_pred EEEECCHHH-HHHHHHCCCEEEE T ss_conf 999289889-9999974993998 No 35 >2g80_A Protein UTR4; YEL038W, UTR4 protein (unknown transcript 4 protein), structural genomics, PSI, protein structure initiative; 2.28A {Saccharomyces cerevisiae} SCOP: c.108.1.22 Probab=74.23 E-value=2.7 Score=21.74 Aligned_cols=44 Identities=25% Similarity=0.339 Sum_probs=36.6 Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEEC Q ss_conf 79833589999999998199962171798832888700110123217-6887 Q gi|254780757|r 92 KPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWCD 142 (307) Q Consensus 92 KPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vwld 142 (307) ||+|+ .|+.-++.+|++|. ++-||+|. .+-..||--.|.- ||++ T Consensus 187 KP~P~----~y~~a~~~lgv~p~--~~v~VgDs-~~Di~aA~~AGm~tv~V~ 231 (253) T 2g80_A 187 KTETQ----SYANILRDIGAKAS--EVLFLSDN-PLELDAAAGVGIATGLAS 231 (253) T ss_dssp TTCHH----HHHHHHHHHTCCGG--GEEEEESC-HHHHHHHHTTTCEEEEEC T ss_pred CCCHH----HHHHHHHHHCCCCC--CEEEEECC-HHHHHHHHHCCCEEEEEE T ss_conf 99979----99999998589944--28999789-999999998599899996 No 36 >2b0c_A Putative phosphatase; alpha-D-glucose-1-phosphate, structural genomics, PSI, protein structure initiative; HET: G1P; 2.00A {Escherichia coli K12} SCOP: c.108.1.2 Probab=73.06 E-value=5.2 Score=19.71 Aligned_cols=89 Identities=20% Similarity=0.268 Sum_probs=58.8 Q ss_pred HHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEE------ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEE Q ss_conf 8987448344016764155788765546677500114444557------5798335899999999981999621717988 Q gi|254780757|r 48 TTLRALGPLSWKAAYVQPSRRPLDGRYAENPNRLQHYYQFQVI------IKPNPLNLQNLYIESLKAVGIDPLIHDVRFV 121 (307) Q Consensus 48 T~lr~lg~~pw~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQVi------lKPsp~niq~lYl~SL~~iGid~~~hDIrFv 121 (307) .++..+-...+.++-+--+-+....+.-+.-..+.+|+-+-+. -||.|+ .|..-++.+|++|. ++-|| T Consensus 98 ~l~~~l~~~~~~~~~~tn~~~~~~~~~~~~~~~l~~~fd~i~~s~~~~~~KP~p~----~~~~~~~~l~~~~~--~~l~I 171 (206) T 2b0c_A 98 AIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEIRDAADHIYLSQDLGMRKPEAR----IYQHVLQAEGFSPS--DTVFF 171 (206) T ss_dssp HHHHHHHHTTCEEEEEECCCCCTTSCCGGGCHHHHHHCSEEEEHHHHTCCTTCHH----HHHHHHHHHTCCGG--GEEEE T ss_pred HHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCHHH----HHHHHHHHHCCCCC--EEEEE T ss_conf 9999999779976542488799999999855550343213433112233323099----99999999287987--18999 Q ss_pred ECCCCCCHHHHCCCCEE-EEECC Q ss_conf 32888700110123217-68878 Q gi|254780757|r 122 EDNWESPTLGAWGLGWE-CWCDG 143 (307) Q Consensus 122 eDnWEsPtLGAwGlGWE-vwldG 143 (307) +|+- +--.+|--+|+. ||++. T Consensus 172 gDs~-~di~~A~~~G~~ti~v~~ 193 (206) T 2b0c_A 172 DDNA-DNIEGANQLGITSILVKD 193 (206) T ss_dssp ESCH-HHHHHHHTTTCEEEECCS T ss_pred ECCH-HHHHHHHHCCCEEEEECC T ss_conf 6898-889999985998999999 No 37 >3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A* Probab=72.30 E-value=5.4 Score=19.59 Aligned_cols=132 Identities=18% Similarity=0.162 Sum_probs=81.1 Q ss_pred HHHHHHHHHHHCCCEEEECCCCC---CCCCCCC--------------------------HHHHHHH-----CCCCCCEEE Q ss_conf 99999999986695896116754---3332248--------------------------5789874-----483440167 Q gi|254780757|r 16 IILTLTQYWAQQGCTILQPYDME---VGAGTFH--------------------------PSTTLRA-----LGPLSWKAA 61 (307) Q Consensus 16 ii~~L~~fW~~~GC~i~qpyd~e---~GAgT~h--------------------------p~T~lr~-----lg~~pw~~a 61 (307) +|.--.++..++|..-+.|-++- +--||-+ |.|-+-+ -..-|.+.+ T Consensus 214 Li~y~ld~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~i~~~~~~l~Li~TaEvpl~~~~~~eil~~~~LP~k~~ 293 (484) T 3lss_A 214 LVSYSLDFLVKRGYTPFYPPFFLNRDVMGEVAQLSQFDEELYQVSGDGDKKYLIATSEMPIAAYHRGRWFTELKEPLKYA 293 (484) T ss_dssp HHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHHHTCCEEESSSSCEEECSSTHHHHHHHTTTCEESCCSSCEEEE T ss_pred HHHHHHHHHHHCCCEEECCCHHHHHHHCCCCCCCCCCHHHCEEEECCCCCEEEECCCCCCHHHHHHHCEEHHHCCCCCCC T ss_conf 99999997651697441486322222037645776520104031026764246224666366666430102322876563 Q ss_pred EECCCCCCCCCCCCCCCCCCCEEEEEE-----EEECCCCHHH-------HHHHHHHHHHCCCCCCCCCEEEEECCCCCCH Q ss_conf 641557887655466775001144445-----5757983358-------9999999998199962171798832888700 Q gi|254780757|r 62 YVQPSRRPLDGRYAENPNRLQHYYQFQ-----VIIKPNPLNL-------QNLYIESLKAVGIDPLIHDVRFVEDNWESPT 129 (307) Q Consensus 62 YvqPsrRP~DgRYGeNPNRlq~y~QfQ-----VilKPsp~ni-------q~lYl~SL~~iGid~~~hDIrFveDnWEsPt 129 (307) =+-||.|+.-|.||...--|.+-|||. ++.+|..... .+..-+=++.|||-.+.-++ -|-- T Consensus 294 ~~s~cfR~EaGs~G~dtrGl~RvHQF~KVE~f~~~~p~~~~s~~~~e~~~~~~e~~~~~L~lpyrvv~~-------~sgd 366 (484) T 3lss_A 294 GMSTCFRKEAGAHGRDTLGIFRVHQFDKIEQFVVCSPRQEESWRHLEDMITTSEEFNKSLGLPYRVVNI-------CSGA 366 (484) T ss_dssp EEEEEECCCTTCSSSCCSTTSSCSEEEEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHTCCEEEEEC-------CTTT T ss_pred CCCCCCCCCCCCCCCCCCCEEEEECCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE-------CCCC T ss_conf 018888854434466778705761134489999846861222899999999999999854870699740-------5877 Q ss_pred HHHCC---CCEEEEECCE----EE---HHHHHHHH Q ss_conf 11012---3217688787----41---47778998 Q gi|254780757|r 130 LGAWG---LGWECWCDGM----EI---SQFTYFQQ 154 (307) Q Consensus 130 LGAwG---lGWEvwldGM----EI---tQFTYFQQ 154 (307) ||++. .--|||+-|. || |-+|=||- T Consensus 367 lg~~a~~k~DiE~W~P~~~~y~EvsS~Snc~DyQs 401 (484) T 3lss_A 367 LNNAAAKKYDLEAWFPASGAFRELVSCSNCTDYQS 401 (484) T ss_dssp CCSSCSEEEEEEEEETTTTEEEEEEEEEECTTHHH T ss_pred CCCCHHHEEEEEEEECCCCCEEEEEEECCCCCHHH T ss_conf 78223346888988667797577877425523766 No 38 >2c4n_A Protein NAGD; nucleotide phosphatase, HAD superfamily, UMP phosphatase, carbohydrate metabolism, hydrolase; 1.8A {Escherichia coli} SCOP: c.108.1.14 Probab=69.52 E-value=4.8 Score=19.97 Aligned_cols=48 Identities=21% Similarity=0.324 Sum_probs=37.6 Q ss_pred EEEECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEE Q ss_conf 557579833589999999998199962171798832888700110123217-688 Q gi|254780757|r 88 QVIIKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWC 141 (307) Q Consensus 88 QVilKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vwl 141 (307) +..-||+|. .|..-++.+|++| +++-+|-|++++--.||--.|+. ||. T Consensus 172 ~~~~KP~~~----~~~~a~~~lgv~~--~e~~mVGDs~~~DI~~a~~aG~~si~V 220 (250) T 2c4n_A 172 FYVGKPSPW----IIRAALNKMQAHS--EETVIVGDNLRTDILAGFQAGLETILV 220 (250) T ss_dssp EECSTTSTH----HHHHHHHHHTCCG--GGEEEEESCTTTHHHHHHHTTCEEEEE T ss_pred CCCCCCCHH----HHHHHHHHHCCCC--CCEEEECCCHHHHHHHHHHCCCCEEEE T ss_conf 102477278----8888888743586--644897168066799999879989998 No 39 >2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A* Probab=69.12 E-value=1.4 Score=23.82 Aligned_cols=142 Identities=23% Similarity=0.329 Sum_probs=83.1 Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEECCC---CHHHHHHHHHHHHHCCCCCCCCCEEEEEC----CCC Q ss_conf 83440167641557887655466775001144445575798---33589999999998199962171798832----888 Q gi|254780757|r 54 GPLSWKAAYVQPSRRPLDGRYAENPNRLQHYYQFQVIIKPN---PLNLQNLYIESLKAVGIDPLIHDVRFVED----NWE 126 (307) Q Consensus 54 g~~pw~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQVilKPs---p~niq~lYl~SL~~iGid~~~hDIrFveD----nWE 126 (307) .|-|.++-.+--|.|... .....++-.+||.--++--. -.|.....-.=|+.+|.. |++|.-+ -.- T Consensus 202 ~~~Piri~s~GrVyRrD~---aiDatH~~~FhQvEGlvVd~~vs~~dLkg~L~~fl~~~f~~----~~k~R~rpsyFPFt 274 (534) T 2du3_A 202 LPLPIKLFSIDRCFRREQ---GEDATRLYTYFSASCVLVDEELSVDDGKAVAEALLRQFGFE----NFRFRKDEKRSKYY 274 (534) T ss_dssp SCSSEEEEEEEEEECCCT---TCSSSCCSEEEEEEEEEECSSCCHHHHHHHHHHHHGGGTCC----EEEEEECTTCCTTB T ss_pred CCCCEEEECCCCCCCCCC---CCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCC----CCEEEECCCCCCCC T ss_conf 899858961562223565---56543174105710488669888999999999999997687----75797468879999 Q ss_pred CCH-----------H----HHCCCCE-EEEECCEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEC Q ss_conf 700-----------1----1012321-76887874147778998668257751456787899999998699821133206 Q gi|254780757|r 127 SPT-----------L----GAWGLGW-ECWCDGMEISQFTYFQQVCGIECSPISGEITYGLERLAMYVQNVNSVYDIVFN 190 (307) Q Consensus 127 sPt-----------L----GAwGlGW-EvwldGMEItQFTYFQQvGGi~c~pv~~EiTYGLERiaMylQ~vdnvyDl~wn 190 (307) .|+ + -.|+-|| ||-=-||==- ..+. -.|||.. ..-.--|||||||-.-++++|-+|... T Consensus 275 ePs~EvdV~~~~~~~~g~~~~~~~gWlEI~GcGmv~P--~VL~-~~GIdy~--g~AfGlGlERLAML~ygI~DIR~Ly~p 349 (534) T 2du3_A 275 IPDTQTEVFAFHPKLVGSSTKYSDGWIEIATFGIYSP--TALA-EYDIPYP--VMNLGLGVERLAMILYGYDDVRKMVYP 349 (534) T ss_dssp CTTTCEEEEEEEEEEETCSSSCTEEEEEEEEEEEBCH--HHHH-TTTCCSC--EEEEEEEHHHHHHHHTTCSCHHHHHCT T ss_pred CCCEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCH--HHHH-HCCCCCC--EEEEEECHHHHHHHHCCCCHHHHHHCC T ss_conf 9953479999505886555575896699967746687--8886-4698987--799865288999987199668875177 Q ss_pred CCCCCCCCCCHHHHHHHH Q ss_conf 888788311062447469 Q gi|254780757|r 191 AIEGQNVLYGDIFAQSEQ 208 (307) Q Consensus 191 ~~~~~~vtYGdif~q~E~ 208 (307) +.. ....+.|+-....+ T Consensus 350 ~~~-~~~~~sD~~~~~~~ 366 (534) T 2du3_A 350 QIH-GEIKLSDLDIAREI 366 (534) T ss_dssp TTT-TCCCCCHHHHHHHC T ss_pred CCC-CCCCCCHHHHHHHC T ss_conf 666-10026679998508 No 40 >1yns_A E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo sapiens} SCOP: c.108.1.22 PDB: 1zs9_A Probab=68.39 E-value=4.1 Score=20.42 Aligned_cols=88 Identities=9% Similarity=0.004 Sum_probs=53.1 Q ss_pred HHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEE-------EEECCCCHHHHHHHHHHHHHCCCCCCCCCEE Q ss_conf 789874483440167641557887655466775001144445-------5757983358999999999819996217179 Q gi|254780757|r 47 STTLRALGPLSWKAAYVQPSRRPLDGRYAENPNRLQHYYQFQ-------VIIKPNPLNLQNLYIESLKAVGIDPLIHDVR 119 (307) Q Consensus 47 ~T~lr~lg~~pw~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQ-------VilKPsp~niq~lYl~SL~~iGid~~~hDIr 119 (307) ..+|..|....++++-+--+-++. -+.-..-.-+..++.+- ..-||+| +.|+.-++.+|++|. ++- T Consensus 136 ~~~L~~L~~~g~~l~i~Tn~~~~~-~~~~l~~~~~~~~~~~~~~~~d~~~~~KP~p----~~~~~~~~~~~~~p~--~~l 208 (261) T 1yns_A 136 VPAVRKWREAGMKVYIYSSGSVEA-QKLLFGHSTEGDILELVDGHFDTKIGHKVES----ESYRKIADSIGCSTN--NIL 208 (261) T ss_dssp HHHHHHHHHTTCEEEEECSSCHHH-HHHHHHTBTTBCCGGGCSEEECGGGCCTTCH----HHHHHHHHHHTSCGG--GEE T ss_pred HHHHHHHHHCCCCEEEECCCCHHH-HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCH----HHHHHHHHHHCCCHH--HEE T ss_conf 999999975488446526886899-9999975143444442322234565568787----999999999488923--589 Q ss_pred EEECCCCCCHHHHCCCCEE-EEEC Q ss_conf 8832888700110123217-6887 Q gi|254780757|r 120 FVEDNWESPTLGAWGLGWE-CWCD 142 (307) Q Consensus 120 FveDnWEsPtLGAwGlGWE-vwld 142 (307) ||+|+. +--.||.-.|+- ||++ T Consensus 209 ~igD~~-~Dv~~A~~aG~~tv~v~ 231 (261) T 1yns_A 209 FLTDVT-REASAAEEADVHVAVVV 231 (261) T ss_dssp EEESCH-HHHHHHHHTTCEEEEEC T ss_pred EEECCH-HHHHHHHHCCCEEEEEE T ss_conf 895688-99999998599799996 No 41 >3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A* Probab=68.22 E-value=0.54 Score=26.80 Aligned_cols=72 Identities=14% Similarity=0.074 Sum_probs=45.4 Q ss_pred HHHHHHHHHHHHCCCE-----EEECCCCCCCCCCCC---------------HHHHHHHC-CCCCCEEEEECCCCCCCCCC Q ss_conf 9999999999866958-----961167543332248---------------57898744-83440167641557887655 Q gi|254780757|r 15 NIILTLTQYWAQQGCT-----ILQPYDMEVGAGTFH---------------PSTTLRAL-GPLSWKAAYVQPSRRPLDGR 73 (307) Q Consensus 15 ~ii~~L~~fW~~~GC~-----i~qpyd~e~GAgT~h---------------p~T~lr~l-g~~pw~~aYvqPsrRP~DgR 73 (307) .++..+.+|..++|++ ++++.+.+-||..|- |..++..| -.-==++--+-||.|--|.| T Consensus 179 ~i~~~iR~fl~~~gFlEVeTP~L~~~~~~~~a~~f~~~~~~~~~~~~L~~Spql~~k~lmv~g~~rvfqI~~~FR~E~~~ 258 (493) T 3a74_A 179 LIIQSMRRYLDSHGYLEVETPMMHAVAGGAAARPFITHHNALDMTLYMRIAIELHLKRLIVGGLEKVYEIGRVFRNEGIS 258 (493) T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESSCCSSSSCCCEEEETTTTEEEEECSCSHHHHHHHHHTTCCEEEEEEEEECCCCCB T ss_pred HHHHHHHHHHHHCCCCEECCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEECEECCCCCC T ss_conf 99999999998659733317764100378666552015446886743367821578988874105478970003578788 Q ss_pred CCCCCCCCCEEEEEEEE Q ss_conf 46677500114444557 Q gi|254780757|r 74 YAENPNRLQHYYQFQVI 90 (307) Q Consensus 74 YGeNPNRlq~y~QfQVi 90 (307) - -|+--++|.-.= T Consensus 259 ~----~h~pEFT~le~e 271 (493) T 3a74_A 259 T----RHNPEFTMLELY 271 (493) T ss_dssp T----TBCSEEEEEEEE T ss_pred C----CCCCHHHHHHHH T ss_conf 7----886066877888 No 42 >3m9l_A Hydrolase, haloacid dehalogenase-like family; HAD family hydrolase, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Pseudomonas fluorescens} Probab=67.64 E-value=4.5 Score=20.16 Aligned_cols=45 Identities=18% Similarity=0.190 Sum_probs=34.8 Q ss_pred ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEEC Q ss_conf 579833589999999998199962171798832888700110123217-6887 Q gi|254780757|r 91 IKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWCD 142 (307) Q Consensus 91 lKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vwld 142 (307) -||+| +.|...++.+|++| .++-||+|. .+--.+|.-.|.. ||.+ T Consensus 126 ~KP~p----~~~~~~~~~l~i~~--~e~i~igDs-~~di~aA~~aGi~~i~v~ 171 (205) T 3m9l_A 126 PKPHP----GGLLKLAEAWDVSP--SRMVMVGDY-RFDLDCGRAAGTRTVLVN 171 (205) T ss_dssp CTTSS----HHHHHHHHHTTCCG--GGEEEEESS-HHHHHHHHHHTCEEEECS T ss_pred CCCCH----HHHHHHHHHCCCCC--CCEEEEECC-HHHHHHHHHCCCEEEEEC T ss_conf 68877----99999998444351--432899567-877999998699899989 No 43 >3e58_A Putative beta-phosphoglucomutase; structural genomics, PSI-2, protein structure initiative; 1.86A {Streptococcus thermophilus lmg 18311} Probab=65.73 E-value=5.3 Score=19.63 Aligned_cols=45 Identities=24% Similarity=0.419 Sum_probs=35.8 Q ss_pred ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEEEEEC Q ss_conf 5798335899999999981999621717988328887001101232176887 Q gi|254780757|r 91 IKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWECWCD 142 (307) Q Consensus 91 lKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWEvwld 142 (307) .||.|+ .|..-++.+|++|. ++-||+|++ +--.+|-..|+-+|.- T Consensus 144 ~Kp~~~----~~~~~~~~~g~~~~--~~l~VgD~~-~Di~aA~~aG~~~i~v 188 (214) T 3e58_A 144 SKPNPE----IYLTALKQLNVQAS--RALIIEDSE-KGIAAGVAADVEVWAI 188 (214) T ss_dssp CTTSSH----HHHHHHHHHTCCGG--GEEEEECSH-HHHHHHHHTTCEEEEE T ss_pred CCCCHH----HHHHHHHHCCCCCC--CEEEEECCH-HHHHHHHHCCCEEEEE T ss_conf 676569----99999998299936--379995699-9999999859989998 No 44 >2i6x_A Hydrolase, haloacid dehalogenase-like family; HAD superfamily, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Porphyromonas gingivalis W83} Probab=65.28 E-value=3.6 Score=20.86 Aligned_cols=45 Identities=27% Similarity=0.485 Sum_probs=36.3 Q ss_pred ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEEC Q ss_conf 579833589999999998199962171798832888700110123217-6887 Q gi|254780757|r 91 IKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWCD 142 (307) Q Consensus 91 lKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vwld 142 (307) -||+|+ +|...++.+|++|. ++-||+|. ++--.+|--+||. ||.+ T Consensus 149 ~KP~~~----~~~~~~~~l~i~p~--e~l~VgDs-~~di~~A~~~G~~ti~v~ 194 (211) T 2i6x_A 149 YKPNED----IFLEMIADSGMKPE--ETLFIDDG-PANVATAERLGFHTYCPD 194 (211) T ss_dssp CTTSHH----HHHHHHHHHCCCGG--GEEEECSC-HHHHHHHHHTTCEEECCC T ss_pred CCCHHH----HHHHHHHHCCCCHH--HEEEECCC-HHHHHHHHHCCCEEEEEC T ss_conf 786066----99999998399931--37888079-888999998599899989 No 45 >2zg6_A Putative uncharacterized protein ST2620, probable 2-haloalkanoic; probable 2-haloalkanoic acid dehalogenase, hydrolase, structural genomics; 2.40A {Sulfolobus tokodaii} Probab=64.83 E-value=6 Score=19.25 Aligned_cols=44 Identities=30% Similarity=0.327 Sum_probs=35.5 Q ss_pred EECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEEC Q ss_conf 7579833589999999998199962171798832888700110123217-6887 Q gi|254780757|r 90 IIKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWCD 142 (307) Q Consensus 90 ilKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vwld 142 (307) .-||+|+ +|+.-|+.+|+ +.-||.|+=++--.||-.+||. ||+| T Consensus 148 ~~KP~~~----~f~~~l~~~~~-----~~~~IgD~~~~Di~~A~~~G~~~v~v~ 192 (220) T 2zg6_A 148 AVKPNPK----IFGFALAKVGY-----PAVHVGDIYELDYIGAKRSYVDPILLD 192 (220) T ss_dssp -----CC----HHHHHHHHHCS-----SEEEEESSCCCCCCCSSSCSEEEEEBC T ss_pred CCCCCHH----HHHHHHHHCCC-----CEEEEEECCHHHHHHHHHCCCEEEEEC T ss_conf 9999999----99999998499-----989997085879999998399899989 No 46 >1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 Probab=64.59 E-value=0.76 Score=25.76 Aligned_cols=57 Identities=19% Similarity=0.169 Sum_probs=32.6 Q ss_pred HHHHHHHHHHHHHCCCEEEE-----CCC---CCCCCCC----C-------------CHHHHHH-HCCCCCCEEEEECCCC Q ss_conf 99999999999866958961-----167---5433322----4-------------8578987-4483440167641557 Q gi|254780757|r 14 QNIILTLTQYWAQQGCTILQ-----PYD---MEVGAGT----F-------------HPSTTLR-ALGPLSWKAAYVQPSR 67 (307) Q Consensus 14 q~ii~~L~~fW~~~GC~i~q-----pyd---~e~GAgT----~-------------hp~T~lr-~lg~~pw~~aYvqPsr 67 (307) ..|+..+-+|..++|.+-+. |.. ...|+++ | .|.-.++ +|..--=++-.+-||. T Consensus 19 s~i~~~iR~ff~~~~f~EV~tPil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Spql~~k~~l~~g~~~vf~I~~~F 98 (294) T 1nnh_A 19 TKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEGMEPAEVEIYGVKMRLTHSMILHKQLAIAMGLKKIFVLSPNI 98 (294) T ss_dssp HHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTCCCCCCCEEEETTEEEEECSCSHHHHHHHHHTTCCEEEEEEEEE T ss_pred HHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHCCCCEEEECEE T ss_conf 99999999999988999984873456677767765567663563567896675157888889899873025644650456 Q ss_pred CCC Q ss_conf 887 Q gi|254780757|r 68 RPL 70 (307) Q Consensus 68 RP~ 70 (307) |-- T Consensus 99 R~E 101 (294) T 1nnh_A 99 RLE 101 (294) T ss_dssp CCC T ss_pred CCC T ss_conf 478 No 47 >3cnh_A Hydrolase family protein; NP_295428.1, predicted hydrolase of haloacid dehalogenase- like superfamily; HET: MSE PG4; 1.66A {Deinococcus radiodurans R1} Probab=64.25 E-value=5.2 Score=19.69 Aligned_cols=44 Identities=25% Similarity=0.450 Sum_probs=35.6 Q ss_pred ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEEEEE Q ss_conf 579833589999999998199962171798832888700110123217688 Q gi|254780757|r 91 IKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWECWC 141 (307) Q Consensus 91 lKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWEvwl 141 (307) -||.|. +|..-++.+|++| +++-||+|+.. --.+|--+||...+ T Consensus 140 ~KP~~~----~y~~~~~~~~~~p--~~~v~igD~~~-di~~A~~~G~~~i~ 183 (200) T 3cnh_A 140 MKPNPA----MYRLGLTLAQVRP--EEAVMVDDRLQ-NVQAARAVGMHAVQ 183 (200) T ss_dssp CTTCHH----HHHHHHHHHTCCG--GGEEEEESCHH-HHHHHHHTTCEEEE T ss_pred CCCCHH----HHHHHHHHHCCCH--HHEEEECCCHH-HHHHHHHCCCEEEE T ss_conf 898699----9999999819695--57788848999-99999985998999 No 48 >2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032} Probab=64.03 E-value=4.6 Score=20.11 Aligned_cols=88 Identities=14% Similarity=0.099 Sum_probs=50.9 Q ss_pred HHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEE------EECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEE Q ss_conf 98744834401676415578876554667750011444455------757983358999999999819996217179883 Q gi|254780757|r 49 TLRALGPLSWKAAYVQPSRRPLDGRYAENPNRLQHYYQFQV------IIKPNPLNLQNLYIESLKAVGIDPLIHDVRFVE 122 (307) Q Consensus 49 ~lr~lg~~pw~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQV------ilKPsp~niq~lYl~SL~~iGid~~~hDIrFve 122 (307) +|+.|-..-++++-+-.+.++.=-+.-+. ..+.+|+..=+ .-||+|+. |...++.+|+++. ++-||+ T Consensus 26 ~l~~lk~~g~~~~i~Tn~~~~~~~~~l~~-~~l~~~fd~i~~~~~~~~~KP~p~~----~~~~~~~~~~~~~--~~~~ig 98 (137) T 2pr7_A 26 LLAAAKKNGVGTVILSNDPGGLGAAPIRE-LETNGVVDKVLLSGELGVEKPEEAA----FQAAADAIDLPMR--DCVLVD 98 (137) T ss_dssp HHHHHHHTTCEEEEEECSCCGGGGHHHHH-HHHTTSSSEEEEHHHHSCCTTSHHH----HHHHHHHTTCCGG--GEEEEE T ss_pred HHHHHHHCCCEEEEECCCCHHHHHHHHHH-CCCHHHEEEEEEECCCCCCCCCHHH----HHHHHHHHCCCCC--EEEEEE T ss_conf 99999987995999889998999999998-4986464699970467887863443----0048887433543--368981 Q ss_pred CCCCCCHHHHCCCCEE-EEECCE Q ss_conf 2888700110123217-688787 Q gi|254780757|r 123 DNWESPTLGAWGLGWE-CWCDGM 144 (307) Q Consensus 123 DnWEsPtLGAwGlGWE-vwldGM 144 (307) |+. +-..+|.-+||. ||.+.. T Consensus 99 D~~-~di~~a~~~G~~ti~~~~~ 120 (137) T 2pr7_A 99 DSI-LNVRGAVEAGLVGVYYQQF 120 (137) T ss_dssp SCH-HHHHHHHHHTCEEEECSCH T ss_pred CCH-HHHHHHHHCCCEEEEECCC T ss_conf 688-8899999829989999997 No 49 >3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens} Probab=63.46 E-value=0.97 Score=24.97 Aligned_cols=58 Identities=21% Similarity=0.363 Sum_probs=38.7 Q ss_pred HCCCCEEEEECCEEEH-----------HHHHHHHHC------CCC--------------CCCCHHHHHHHHHHHHHHHCC Q ss_conf 0123217688787414-----------777899866------825--------------775145678789999999869 Q gi|254780757|r 132 AWGLGWECWCDGMEIS-----------QFTYFQQVC------GIE--------------CSPISGEITYGLERLAMYVQN 180 (307) Q Consensus 132 AwGlGWEvwldGMEIt-----------QFTYFQQvG------Gi~--------------c~pv~~EiTYGLERiaMylQ~ 180 (307) .+.-.+|.-++|+||. |--.|.+.+ +-+ =-|..+-+..|||||.|++-| T Consensus 413 ~~~~~fdL~i~G~Ei~~G~~r~~d~~~q~~~~~~~~~~~~~~~~~~~~~de~yl~a~~yG~PPhgG~glGldRLvm~l~g 492 (521) T 3bju_A 413 GLTERFELFVMKKEICNAYTELNDPMRQRQLFEEQAKAKAAGDDEAMFIDENFCTALEYGLPPTAGWGMGIDRVAMFLTD 492 (521) T ss_dssp TBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHHHHHTCTTSCCCCHHHHHHHTTTCCSEEEEEEEHHHHHHHHTT T ss_pred CEEEEECEEECCEEEEEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHC T ss_conf 80465157757999986789937999999999999999853767411005999999548999740135899999999828 Q ss_pred CCCEEEEEE Q ss_conf 982113320 Q gi|254780757|r 181 VNSVYDIVF 189 (307) Q Consensus 181 vdnvyDl~w 189 (307) .+||-|.+. T Consensus 493 ~~nIRdvi~ 501 (521) T 3bju_A 493 SNNIKEVLL 501 (521) T ss_dssp CSSGGGSCS T ss_pred CCCHHHCCC T ss_conf 982888061 No 50 >1cja_A Protein (actin-fragmin kinase); transferase; HET: AMP; 2.90A {Physarum polycephalum} SCOP: d.144.1.3 Probab=63.26 E-value=8 Score=18.34 Aligned_cols=38 Identities=18% Similarity=0.083 Sum_probs=28.0 Q ss_pred EEEECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCC Q ss_conf 55757983358999999999819996217179883288870 Q gi|254780757|r 88 QVIIKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESP 128 (307) Q Consensus 88 QVilKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsP 128 (307) .|||||||.-.||+|..-|..+ +....-.+|+|| |+++ T Consensus 93 ~vVlK~s~t~~~Evygs~LAr~-Lglp~PemRlIe--~~~e 130 (342) T 1cja_A 93 VFIVKRSTNIESETFCSLLCMR-LGLHAPKVRVVS--SNSE 130 (342) T ss_dssp EEEEECCTTHHHHHHHHHHHHH-HTCCCCCEEEEE--SSSH T ss_pred EEEEECCCCHHHHHHHHHHHHH-HCCCCCCEEEEE--CCCH T ss_conf 7999658823999999999999-599999669971--5768 No 51 >3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* Probab=63.14 E-value=0.81 Score=25.53 Aligned_cols=71 Identities=10% Similarity=0.078 Sum_probs=43.3 Q ss_pred HHHHHHHHHHHHHCCCEEEE-----CCCCCCCCC---------------------CCCHHHHHH-HCCCCCCEEEEECCC Q ss_conf 99999999999866958961-----167543332---------------------248578987-448344016764155 Q gi|254780757|r 14 QNIILTLTQYWAQQGCTILQ-----PYDMEVGAG---------------------TFHPSTTLR-ALGPLSWKAAYVQPS 66 (307) Q Consensus 14 q~ii~~L~~fW~~~GC~i~q-----pyd~e~GAg---------------------T~hp~T~lr-~lg~~pw~~aYvqPs 66 (307) ..||..+-+|+.++|.+=.+ +.+. -||+ +-.|.-.+. ++-.---++-.+-|| T Consensus 40 s~i~~~iR~ff~~~gF~EV~TPiL~~~~~-~ga~~~pf~~~~~~~~~~~~~~~yL~~SpQl~lq~l~~~g~~rVf~I~p~ 118 (345) T 3a5y_A 40 AAIMAEIRRFFADRGVLEVETPCMSQATV-TDIHLVPFETRFVGPGHSQGMNLWLMTSPEYHMKRLLVAGCGPVFQLCRS 118 (345) T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESSCC-CCTTCCCCEEEECCSTTSCCEEEEECSCSHHHHHHHHHTTCCSEEEEEEE T ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCCCC-CCCCCCCEEEEECCCCCCCCCCEEECCCHHHHHHHHHHCCCCCCEEEECC T ss_conf 99999999999888978987986478898-76456616887236666678577755487999999996799872798345 Q ss_pred CCCCCCCCCCCCCCCCEEEEEEE Q ss_conf 78876554667750011444455 Q gi|254780757|r 67 RRPLDGRYAENPNRLQHYYQFQV 89 (307) Q Consensus 67 rRP~DgRYGeNPNRlq~y~QfQV 89 (307) .|--+.+ +-++--++|.-. T Consensus 119 FR~E~~~----~~H~~EFtmlE~ 137 (345) T 3a5y_A 119 FRNEEMG----RYHNPEFTMLEW 137 (345) T ss_dssp ECCCCCB----TTBCSEEEEEEE T ss_pred CCCCCCC----CCCCCCEEEEEE T ss_conf 3269989----885763455344 No 52 >3kzx_A HAD-superfamily hydrolase, subfamily IA, variant 1; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 1.90A {Ehrlichia chaffeensis} Probab=61.95 E-value=7.4 Score=18.57 Aligned_cols=44 Identities=30% Similarity=0.433 Sum_probs=34.9 Q ss_pred ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEEEE Q ss_conf 57983358999999999819996217179883288870011012321768 Q gi|254780757|r 91 IKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWECW 140 (307) Q Consensus 91 lKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWEvw 140 (307) -||.| +.|+.-++.+|++|. .++-||+|.. +-..+|-.+|+-.. T Consensus 158 ~KP~~----~~~~~~~~~~~~~p~-~~~~~VgDs~-~Di~aA~~~G~~~v 201 (231) T 3kzx_A 158 IKPSP----EPVLAALTNINIEPS-KEVFFIGDSI-SDIQSAIEAGCLPI 201 (231) T ss_dssp CTTSS----HHHHHHHHHHTCCCS-TTEEEEESSH-HHHHHHHHTTCEEE T ss_pred CCCCH----HHHHHHHHHCCCCHH-HCEEEEECCH-HHHHHHHHCCCEEE T ss_conf 78989----999999999198935-7459993888-88999998499899 No 53 >2w43_A Hypothetical 2-haloalkanoic acid dehalogenase; hydrolase, metabolic process; HET: MES; 1.66A {Sulfolobus tokodaii} PDB: 2w11_A Probab=61.64 E-value=4.8 Score=19.92 Aligned_cols=45 Identities=24% Similarity=0.410 Sum_probs=33.7 Q ss_pred EECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEECC Q ss_conf 7579833589999999998199962171798832888700110123217-68878 Q gi|254780757|r 90 IIKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWCDG 143 (307) Q Consensus 90 ilKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vwldG 143 (307) .-||+|+ .|+.-++.+| | +++-||+|. .+--.||--+||. ||++. T Consensus 126 ~~KP~p~----~~~~~~~~l~--~--~~~l~igD~-~~Di~~A~~aG~~~i~v~~ 171 (201) T 2w43_A 126 EYKPSPK----VYKYFLDSIG--A--KEAFLVSSN-AFDVIGAKNAGMRSIFVNR 171 (201) T ss_dssp CCTTCHH----HHHHHHHHHT--C--SCCEEEESC-HHHHHHHHHTTCEEEEECS T ss_pred CCCCCHH----HHHHHHHHCC--C--CCEEEECCC-HHHHHHHHHHCCEEEEECC T ss_conf 7898599----9999998425--5--650796475-7899999990993999899 No 54 >1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* Probab=60.93 E-value=1.1 Score=24.46 Aligned_cols=60 Identities=17% Similarity=0.128 Sum_probs=37.4 Q ss_pred HHHHHHHHHHHHCCCEEE-----ECCCCCCCCCCCC-------------HHHHHHHC-CCCCCEEEEECCCCCCCCCCC Q ss_conf 999999999986695896-----1167543332248-------------57898744-834401676415578876554 Q gi|254780757|r 15 NIILTLTQYWAQQGCTIL-----QPYDMEVGAGTFH-------------PSTTLRAL-GPLSWKAAYVQPSRRPLDGRY 74 (307) Q Consensus 15 ~ii~~L~~fW~~~GC~i~-----qpyd~e~GAgT~h-------------p~T~lr~l-g~~pw~~aYvqPsrRP~DgRY 74 (307) .|+..+.+|..++|.+=+ .+.+.|-+|-.|+ |.-++..| -.--=++-.+-||.|.-+++= T Consensus 183 ~i~~~iR~ff~~~gFlEVeTPiL~~~~~~g~~~~f~~~~~~~~~yL~~Spel~~k~l~~~g~~rvfei~~~FR~E~~~t 261 (487) T 1eov_A 183 GVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEVTYFKGKAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNT 261 (487) T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESSCSSSSSCCCEEEETTEEEEECSCTHHHHHHHHHTTCCEEEEEEEEECCCCCCC T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHCCCEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCEECCCCCC T ss_conf 9999987310149889998854245675203431330002765303350699999987524556537630130566555 No 55 >1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 2aly_A* 2akw_A* 2amc_A* Probab=60.73 E-value=2.3 Score=22.27 Aligned_cols=129 Identities=20% Similarity=0.209 Sum_probs=68.0 Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEECC---CCHHHHHHHHHHHHHCCCCCCCCCEEEEECC--CCCC Q ss_conf 8344016764155788765546677500114444557579---8335899999999981999621717988328--8870 Q gi|254780757|r 54 GPLSWKAAYVQPSRRPLDGRYAENPNRLQHYYQFQVIIKP---NPLNLQNLYIESLKAVGIDPLIHDVRFVEDN--WESP 128 (307) Q Consensus 54 g~~pw~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQVilKP---sp~niq~lYl~SL~~iGid~~~hDIrFveDn--WEsP 128 (307) ...|+++.++--+.|+.+-.. ..+-.+||.--++.- +-.+....--.=++.++. .+..+||...= .-.| T Consensus 190 ~~pp~r~i~~GrVyR~d~~D~----tH~p~FhQ~Egl~vd~~it~~~Lk~~l~~~~~~~f~--~~~~~R~rp~yFPfTeP 263 (350) T 1b7y_A 190 HTPPFRIVVPGRVFRFEQTDA----THEAVFHQLEGLVVGEGIAMAHLKGAIYELAQALFG--PDSKVRFQPVYFPFVEP 263 (350) T ss_dssp CCSSEEEEEEEEEECCCCCCS----SCCSEEEEEEEEEEETTCCHHHHHHHHHHHHHHHSC--SSCCEEEEECCBTTEEE T ss_pred CCCCEEEEECCCCCCCCCCCC----CCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCC--CCCEEEECCCCCCCCCC T ss_conf 499816983676546899887----558754688999813002279889999999997418--98648757887898888 Q ss_pred HHH--HC---CCCE-EEEECCEEEHHHHHHHHHC------CCCCC--CCHH-HHHHHHHHHHHHHCCCCCEEEEEEC Q ss_conf 011--01---2321-7688787414777899866------82577--5145-6787899999998699821133206 Q gi|254780757|r 129 TLG--AW---GLGW-ECWCDGMEISQFTYFQQVC------GIECS--PISG-EITYGLERLAMYVQNVNSVYDIVFN 190 (307) Q Consensus 129 tLG--Aw---GlGW-EvwldGMEItQFTYFQQvG------Gi~c~--pv~~-EiTYGLERiaMylQ~vdnvyDl~wn 190 (307) ++- .+ +=|| ||-=-||==.+ .++.+| |++-. -.+| -.--|||||||-.-+++++-++-=| T Consensus 264 s~Evdi~~~~~~~WiEi~G~Gmv~p~--vl~~~g~~~~~~g~~~~~~~~~g~AfG~GleRlaMl~~gi~DiR~~~~~ 338 (350) T 1b7y_A 264 GAQFAVWWPEGGKWLELGGAGMVHPK--VFQAVDAYRERLGLPPAYRGVTGFAFGLGVERLAMLRYGIPDIRYFFGG 338 (350) T ss_dssp EEEEEEEETTTTEEEEEEEEEEECHH--HHHHHHHHHHHTTCCCCCTTCEEEEEEEEHHHHHHHHTTCCCGGGTTSC T ss_pred CCEEEEEECCCCEEEEEECCCCCCHH--HHHHCCCCHHHCCCCCCCCCCEEEEEEECHHHHHHHHCCCCHHHHHHCC T ss_conf 73499996879956898056377789--9975589766517885456675999864388999997399768877517 No 56 >2ho4_A Haloacid dehalogenase-like hydrolase domain containing 2; HDHD2, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; 2.20A {Mus musculus} PDB: 3hlt_A Probab=60.69 E-value=8.3 Score=18.21 Aligned_cols=47 Identities=19% Similarity=0.384 Sum_probs=38.3 Q ss_pred EECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEEC Q ss_conf 7579833589999999998199962171798832888700110123217-6887 Q gi|254780757|r 90 IIKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWCD 142 (307) Q Consensus 90 ilKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vwld 142 (307) +-||+|. ++..-++.+|++| .++-+|-|+.++--.||-..||. ||.. T Consensus 177 ~~KP~p~----~~~~~~~~lgi~p--~~~~~VGD~~~~DI~~a~~aG~~si~V~ 224 (259) T 2ho4_A 177 VGKPEKT----FFLEALRDADCAP--EEAVMIGDDCRDDVDGAQNIGMLGILVK 224 (259) T ss_dssp CSTTSHH----HHHHHGGGGTCCG--GGEEEEESCTTTTHHHHHHTTCEEEEES T ss_pred ECCCCHH----HHHHHHHHHCCCC--CCEEEECCCHHHHHHHHHHCCCCEEEEC T ss_conf 2068469----9999999824485--2104754773778999998799699989 No 57 >2go7_A Hydrolase, haloacid dehalogenase-like family; structural genomics, joint center for structural genomics; 2.10A {Streptococcus pneumoniae TIGR4} SCOP: c.108.1.6 Probab=59.43 E-value=7 Score=18.76 Aligned_cols=43 Identities=16% Similarity=0.140 Sum_probs=35.4 Q ss_pred ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEEEE Q ss_conf 57983358999999999819996217179883288870011012321768 Q gi|254780757|r 91 IKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWECW 140 (307) Q Consensus 91 lKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWEvw 140 (307) -||.|+ .|+.-++.+|++| .++-||+|. .+--.+|.-+|+.++ T Consensus 139 ~Kp~~~----~~~~~~~~~~~~p--~~~l~vgD~-~~di~~A~~aG~~~i 181 (207) T 2go7_A 139 RKPSPE----AATYLLDKYQLNS--DNTYYIGDR-TLDVEFAQNSGIQSI 181 (207) T ss_dssp CTTSSH----HHHHHHHHHTCCG--GGEEEEESS-HHHHHHHHHHTCEEE T ss_pred CCCCHH----HHHHHHHHCCCCH--HHEEEECCC-HHHHHHHHHCCCEEE T ss_conf 898699----9999999909693--028888689-899999998499499 No 58 >2fdr_A Conserved hypothetical protein; SAD, structural genomics, HAD-superfamily hydrolase, putative B-phosphoglucomutase, PSI; 2.00A {Agrobacterium tumefaciens str} SCOP: c.108.1.6 Probab=57.94 E-value=8.9 Score=18.00 Aligned_cols=44 Identities=27% Similarity=0.484 Sum_probs=33.6 Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEEC Q ss_conf 79833589999999998199962171798832888700110123217-6887 Q gi|254780757|r 92 KPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWCD 142 (307) Q Consensus 92 KPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vwld 142 (307) ||.| +.|+..++.+|++| +++-||+|. .+--.+|-..|.- ||.. T Consensus 143 KP~~----~~~~~~~~~l~v~p--~~~l~IgD~-~~Di~aA~~~G~~~i~v~ 187 (229) T 2fdr_A 143 KPKP----DIFLHGAAQFGVSP--DRVVVVEDS-VHGIHGARAAGMRVIGFT 187 (229) T ss_dssp TTSS----HHHHHHHHHHTCCG--GGEEEEESS-HHHHHHHHHTTCEEEEEC T ss_pred CCCH----HHHHHHHHHCCCCC--CCEEEEECC-HHHHHHHHHCCCEEEEEC T ss_conf 9879----99999999739997--626998058-878999998699899984 No 59 >1te2_A Putative phosphatase; structural genomics, phosphates, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Escherichia coli O157} SCOP: c.108.1.6 Probab=57.56 E-value=8.9 Score=18.01 Aligned_cols=44 Identities=20% Similarity=0.410 Sum_probs=35.8 Q ss_pred ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEEEEE Q ss_conf 579833589999999998199962171798832888700110123217688 Q gi|254780757|r 91 IKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWECWC 141 (307) Q Consensus 91 lKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWEvwl 141 (307) -||+| +.|+.-++.+|++| +++-||.|. .+--.+|--+|+.+.. T Consensus 149 ~Kp~~----~~~~~~~~~l~~~~--~~~l~VgDs-~~Di~aA~~~G~~~i~ 192 (226) T 1te2_A 149 SKPHP----QVYLDCAAKLGVDP--LTCVALEDS-VNGMIASKAARMRSIV 192 (226) T ss_dssp CTTST----HHHHHHHHHHTSCG--GGEEEEESS-HHHHHHHHHTTCEEEE T ss_pred CCCCH----HHHHHHHHHHCCCC--HHEEEEECC-HHHHHHHHHCCCEEEE T ss_conf 89889----99999999929791--126999629-9899999993998999 No 60 >3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} Probab=57.26 E-value=10 Score=17.63 Aligned_cols=61 Identities=20% Similarity=0.196 Sum_probs=45.4 Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEE-----EEECCCCHH-------HHHHHHHHHHHCCCCCC Q ss_conf 83440167641557887655466775001144445-----575798335-------89999999998199962 Q gi|254780757|r 54 GPLSWKAAYVQPSRRPLDGRYAENPNRLQHYYQFQ-----VIIKPNPLN-------LQNLYIESLKAVGIDPL 114 (307) Q Consensus 54 g~~pw~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQ-----VilKPsp~n-------iq~lYl~SL~~iGid~~ 114 (307) ..-|.+.+=+-||+|..-|.||.+.--|.+-+||- ++.+|++++ +.+++-.-++.|||-.. T Consensus 351 ~~LP~~~~~~s~cfR~Eag~~g~dtrGL~RvhQF~KvE~~~~~~~~~e~s~~~~~~~l~~~e~i~~~L~lpyr 423 (536) T 3err_A 351 EALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELPYR 423 (536) T ss_dssp GGCSEEEEEEEEEECCCTTCTTSSCSTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCEE T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCEE T ss_conf 6589765546982455556557544213331343148999853651345799999999999999742488559 No 61 >2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2} Probab=56.17 E-value=10 Score=17.51 Aligned_cols=127 Identities=22% Similarity=0.294 Sum_probs=70.0 Q ss_pred HCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEE-C--CCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCC- Q ss_conf 4483440167641557887655466775001144445575-7--98335899999999981999621717988328887- Q gi|254780757|r 52 ALGPLSWKAAYVQPSRRPLDGRYAENPNRLQHYYQFQVII-K--PNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWES- 127 (307) Q Consensus 52 ~lg~~pw~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQVil-K--Psp~niq~lYl~SL~~iGid~~~hDIrFveDnWEs- 127 (307) .-++.|.+.-.+-.|.|+... +....+-.++|.-.++ . .+-.+..-.--.-|+.+|+. +++|.-+.=.+ T Consensus 219 ~r~~~plrlFEiGrVFR~D~~---~D~tHl~~fhQleGlvvg~~vdf~DLKg~le~lL~~lg~~----~vkfr~~~s~~P 291 (665) T 2odr_A 219 NKKPLPFKLFSIDRCFRREQK---EDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQFGFT----NFKFIPDEKKSK 291 (665) T ss_dssp TTSCSCEEEEEEEEEECCCSC---CCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTTTCC----CEEEEECTTCCT T ss_pred HCCCCCEEEEEEEEEECCCCC---CCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCC----CCEEEECCCCCC T ss_conf 579998589977788747875---5465586114899999867567899999999999996788----718996577789 Q ss_pred ---CHHH-------HCCCCEEEEEC-CEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEC Q ss_conf ---0011-------01232176887-874147778998668257751456787899999998699821133206 Q gi|254780757|r 128 ---PTLG-------AWGLGWECWCD-GMEISQFTYFQQVCGIECSPISGEITYGLERLAMYVQNVNSVYDIVFN 190 (307) Q Consensus 128 ---PtLG-------AwGlGWEvwld-GMEItQFTYFQQvGGi~c~pv~~EiTYGLERiaMylQ~vdnvyDl~wn 190 (307) |..- .++-||=-.+. || |.. .- ..--||+..... .--|||||||..-+++++-++... T Consensus 292 f~hPg~eaeV~~~~~k~~~WlEIgg~G~-vhP-~V-Lk~~GId~~V~A--FGLGLERLAMlk~gI~DIR~L~~p 360 (665) T 2odr_A 292 YYTPETQTEVYAYHPKLKEWLEVATFGV-YSP-VA-LSKYGIDVPVMN--LGLGVERLAMISGNFADVREMVYP 360 (665) T ss_dssp TBCTTCCEEEEEEETTTTEEEEEEEEEE-BCH-HH-HHHTTCCSCEEE--EEEEHHHHHHHHTTCSCHHHHHCG T ss_pred CCCCCEEEEEEEEECCCCEEEEEEECCC-CCH-HH-HHHCCCCCCEEE--EEECHHHHHHHHCCCCHHHHHHCC T ss_conf 9899405899999456983999992443-079-99-987697985799--997589999987399768876166 No 62 >3dv9_A Beta-phosphoglucomutase; structural genomics, APC60149, PSI- 2, protein structure initiative; HET: MSE; 1.72A {Bacteroides vulgatus atcc 8482} Probab=55.93 E-value=10 Score=17.54 Aligned_cols=45 Identities=24% Similarity=0.311 Sum_probs=35.1 Q ss_pred ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEEC Q ss_conf 579833589999999998199962171798832888700110123217-6887 Q gi|254780757|r 91 IKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWCD 142 (307) Q Consensus 91 lKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vwld 142 (307) -||+| +.|...++.+|++|. ++-||.|+ .+--.+|-..|.- ||+. T Consensus 164 ~KP~p----~~~~~a~~~l~~~~~--~~i~VGDs-~~Di~aA~~aG~~~I~v~ 209 (247) T 3dv9_A 164 GKPNP----EPYLMALKKGGFKPN--EALVIENA-PLGVQAGVAAGIFTIAVN 209 (247) T ss_dssp CTTSS----HHHHHHHHHHTCCGG--GEEEEECS-HHHHHHHHHTTSEEEEEC T ss_pred CCCCH----HHHHHHHHHHCCCCC--EEEEEECC-HHHHHHHHHCCCEEEEEC T ss_conf 79988----999999999289986--38999067-877999999599899988 No 63 >2hoq_A Putative HAD-hydrolase PH1655; haloacid dehalogenase, structural genomics, NPPSFA; 1.70A {Pyrococcus horikoshii OT3} Probab=54.91 E-value=11 Score=17.37 Aligned_cols=45 Identities=31% Similarity=0.575 Sum_probs=36.5 Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEEC Q ss_conf 79833589999999998199962171798832888700110123217-6887 Q gi|254780757|r 92 KPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWCD 142 (307) Q Consensus 92 KPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vwld 142 (307) ||+|+ .|..-++.+|++|. ++-||.|+.++--.+|--.|+- ||+. T Consensus 150 KP~~~----~~~~~~~~~~~~p~--~~v~IgD~~~~Di~~A~~~G~~~i~v~ 195 (241) T 2hoq_A 150 KPHPK----IFKKALKAFNVKPE--EALMVGDRLYSDIYGAKRVGMKTVWFR 195 (241) T ss_dssp TTCHH----HHHHHHHHHTCCGG--GEEEEESCTTTTHHHHHHTTCEEEEEC T ss_pred CCCHH----HHHHHHHHHCCCHH--HEEEECCCCHHHHHHHHHCCCEEEEEC T ss_conf 98289----99999998258805--615753584766999998699899986 No 64 >3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* Probab=54.87 E-value=1.6 Score=23.35 Aligned_cols=67 Identities=10% Similarity=0.095 Sum_probs=39.6 Q ss_pred HHHHHHHHHHHHHCCCEE-----EECCCCCCCCCCCCHHH-------------HHHHCC-CCCCEEEEECCCCCCCCCCC Q ss_conf 999999999998669589-----61167543332248578-------------987448-34401676415578876554 Q gi|254780757|r 14 QNIILTLTQYWAQQGCTI-----LQPYDMEVGAGTFHPST-------------TLRALG-PLSWKAAYVQPSRRPLDGRY 74 (307) Q Consensus 14 q~ii~~L~~fW~~~GC~i-----~qpyd~e~GAgT~hp~T-------------~lr~lg-~~pw~~aYvqPsrRP~DgRY 74 (307) -.|+..+.+|..++|.+= +.+.+.|-||-.|.+.. ++..|= .--=++--+-||.|-.|.+= T Consensus 141 s~i~~~iR~fl~~~gF~EVeTPiL~~~~~eg~a~~f~~~~~~~~~~L~~Spel~lk~l~~~G~~rvfei~~~FR~E~~~~ 220 (438) T 3nem_A 141 SSVFKAVRDFFHENGFIEIHTPKIIATATEGGTELFPMKYFEEDAFLAQSPQLYKQIMMASGLDRVYEIAPIFRAEEHNT 220 (438) T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESSCSSCSSSCCEEEETTEEEEECSCSHHHHHHGGGTTCCEEEEEEEEECCCSSCC T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHCCCCCEEEEEEECCCCCCCC T ss_conf 99999999987547967997764424466655444663136887535038568878876514885289733014455777 Q ss_pred CCCCCC Q ss_conf 667750 Q gi|254780757|r 75 AENPNR 80 (307) Q Consensus 75 GeNPNR 80 (307) --+++- T Consensus 221 ~rh~~e 226 (438) T 3nem_A 221 TRHLNE 226 (438) T ss_dssp TTCCSE T ss_pred CCCCCC T ss_conf 554423 No 65 >2wf7_A Beta-PGM, beta-phosphoglucomutase; transition state analogue, haloacid dehalogenase superfamily, isomerase, phosphotransferase; HET: G7P; 1.05A {Lactococcus lactis} PDB: 1o03_A* 1z4n_A* 1z4o_A* 1zol_A 2wf5_A* 2wf6_A* 1o08_A* 2wf8_A* 2wf9_A* 2wfa_A 2whe_A 1lvh_A* 3fm9_A Probab=53.82 E-value=11 Score=17.25 Aligned_cols=45 Identities=24% Similarity=0.336 Sum_probs=34.7 Q ss_pred ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEEC Q ss_conf 579833589999999998199962171798832888700110123217-6887 Q gi|254780757|r 91 IKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWCD 142 (307) Q Consensus 91 lKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vwld 142 (307) -||.| +.|..-++.+|++|. ++-||.|. .+--.+|--.|+- ||++ T Consensus 144 ~KP~p----~~~~~~~~~~g~~p~--~~l~vgD~-~~di~aA~~aG~~~i~v~ 189 (221) T 2wf7_A 144 SKPAP----DIFIAAAHAVGVAPS--ESIGLEDS-QAGIQAIKDSGALPIGVG 189 (221) T ss_dssp CTTSS----HHHHHHHHHTTCCGG--GEEEEESS-HHHHHHHHHHTCEEEEES T ss_pred CCCCH----HHHHHHHHHHCCCHH--HEEEECCC-HHHHHHHHHCCCEEEEEC T ss_conf 68888----999999999397867--87988289-889999998599999999 No 66 >3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A Probab=52.09 E-value=1.6 Score=23.35 Aligned_cols=61 Identities=18% Similarity=0.135 Sum_probs=35.3 Q ss_pred HHHHHHHHHHHHHCCCEE-----EECCCCCCCCCCCCH-------------HHHHHHCCCCCCEEEEECCCCCCCCCCC Q ss_conf 999999999998669589-----611675433322485-------------7898744834401676415578876554 Q gi|254780757|r 14 QNIILTLTQYWAQQGCTI-----LQPYDMEVGAGTFHP-------------STTLRALGPLSWKAAYVQPSRRPLDGRY 74 (307) Q Consensus 14 q~ii~~L~~fW~~~GC~i-----~qpyd~e~GAgT~hp-------------~T~lr~lg~~pw~~aYvqPsrRP~DgRY 74 (307) ..|+..+-+|..++|.+- +++.+.|-+|--|.+ .-.++.+-..-=++-++-||.|--+++= T Consensus 160 s~i~~~iR~f~~~~gF~EVeTP~L~~~~~eg~~~~f~~~~~~~~~~L~~spql~kq~~~~g~~rvf~i~~~fR~E~~~~ 238 (456) T 3m4p_A 160 SEIQWYFRKYYHDNHFTEIQPPTIVKTQCEGGSTLFKLQYFNEPAYLTQSSQLYLESVIASLGKSFCMLSSYRAEQSRT 238 (456) T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEC------CCCCEEEETTEEEEECSCCHHHHHTTHHHHSSEEEEEEEECCCSCCC T ss_pred HHHHHHHHHHHCCCCEEEECCCEECCCCCCCHHHCCCCCCCCHHHHCCCCHHHHHHHHHHCCCCEEEECCCEECCCCCC T ss_conf 9999999862035636885297672546643121354322211132038788751233430465056224033366531 No 67 >3l5k_A Protein GS1, haloacid dehalogenase-like hydrolase domain- containing protein 1A; HDHD1A, haloacid dehalogenase-like hydrolase domain containing 1A; 2.00A {Homo sapiens} Probab=47.19 E-value=5.4 Score=19.55 Aligned_cols=96 Identities=11% Similarity=0.068 Sum_probs=61.3 Q ss_pred HHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEC----CCCHHHHHHHHHHHHHCCCCCCCCCEEEE Q ss_conf 57898744834401676415578876554667750011444455757----98335899999999981999621717988 Q gi|254780757|r 46 PSTTLRALGPLSWKAAYVQPSRRPLDGRYAENPNRLQHYYQFQVIIK----PNPLNLQNLYIESLKAVGIDPLIHDVRFV 121 (307) Q Consensus 46 p~T~lr~lg~~pw~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQVilK----Psp~niq~lYl~SL~~iGid~~~hDIrFv 121 (307) ...+|..|-....+++-+-.+++..--.--.....+..|+..-|+-- +.++.--+.|+.-++.+|++|...++-|| T Consensus 117 ~~e~L~~L~~~g~~~~i~t~~~~~~~~~~~~~~~~l~~~f~~~v~~~~~~v~~~KP~~~~~~~~~~~l~~~p~~~~~v~v 196 (250) T 3l5k_A 117 AEKLIIHLRKHGIPFALATSSRSASFDMKTSRHKEFFSLFSHIVLGDDPEVQHGKPDPDIFLACAKRFSPPPAMEKCLVF 196 (250) T ss_dssp HHHHHHHHHHTTCCEEEECSCCHHHHHHHTTTCHHHHTTSSCEECTTCTTCCSCTTSTHHHHHHHHTSSSCCCGGGEEEE T ss_pred HHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEE T ss_conf 99999999987997022127865888888876304353445478426542103576438999999994859862238997 Q ss_pred ECCCCCCHHHHCCCCEE-EEEC Q ss_conf 32888700110123217-6887 Q gi|254780757|r 122 EDNWESPTLGAWGLGWE-CWCD 142 (307) Q Consensus 122 eDnWEsPtLGAwGlGWE-vwld 142 (307) +|.. +-..+|-..|+- ||+. T Consensus 197 gDs~-~Di~aA~~aG~~~i~v~ 217 (250) T 3l5k_A 197 EDAP-NGVEAALAAGMQVVMVP 217 (250) T ss_dssp ESSH-HHHHHHHHTTCEEEECC T ss_pred CCCH-HHHHHHHHCCCEEEEEC T ss_conf 6878-87999998699899988 No 68 >2fi1_A Hydrolase, haloacid dehalogenase-like family; structural genomics, PSI, protein structure initiative; 1.40A {Streptococcus pneumoniae TIGR4} SCOP: c.108.1.3 Probab=45.35 E-value=12 Score=16.95 Aligned_cols=89 Identities=15% Similarity=0.111 Sum_probs=58.6 Q ss_pred HHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEE------ECCCCHHHHHHHHHHHHHCCCCCCCCCEE Q ss_conf 578987448344016764155788765546677500114444557------57983358999999999819996217179 Q gi|254780757|r 46 PSTTLRALGPLSWKAAYVQPSRRPLDGRYAENPNRLQHYYQFQVI------IKPNPLNLQNLYIESLKAVGIDPLIHDVR 119 (307) Q Consensus 46 p~T~lr~lg~~pw~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQVi------lKPsp~niq~lYl~SL~~iGid~~~hDIr 119 (307) -..+|..|..+...++.+-.+.+..- ..-++ -.+.+|+.+=+. -||+|+ .|..-++.+|+++ .- T Consensus 87 ~~~~L~~L~~~g~~~~v~sn~~~~~~-~~l~~-~~l~~~fd~i~~~~~~~~~KP~~~----~~~~~~~~~~~~~----~l 156 (190) T 2fi1_A 87 VSDLLEDISNQGGRHFLVSHRNDQVL-EILEK-TSIAAYFTEVVTSSSGFKRKPNPE----SMLYLREKYQISS----GL 156 (190) T ss_dssp HHHHHHHHHHTTCEEEEECSSCTHHH-HHHHH-TTCGGGEEEEECGGGCCCCTTSCH----HHHHHHHHTTCSS----EE T ss_pred HHHHHHHHHHCCEEEEEECCCCCCCC-CCHHC-CCCCCCCCCEECCCCCCCCCCCHH----HHHHHHHHCCCCC----EE T ss_conf 99999998745813899537864320-10001-366433352331333578898779----9999999769997----69 Q ss_pred EEECCCCCCHHHHCCCCEE-EEECCEE Q ss_conf 8832888700110123217-6887874 Q gi|254780757|r 120 FVEDNWESPTLGAWGLGWE-CWCDGME 145 (307) Q Consensus 120 FveDnWEsPtLGAwGlGWE-vwldGME 145 (307) ||+|. .+--.+|--+||. ||.++-+ T Consensus 157 ~VgDs-~~di~aA~~~G~~~i~v~~~~ 182 (190) T 2fi1_A 157 VIGDR-PIDIEAGQAAGLDTHLFTSIV 182 (190) T ss_dssp EEESS-HHHHHHHHHTTCEEEECSCHH T ss_pred EECCC-HHHHHHHHHCCCEEEEECCCC T ss_conf 99079-999999998699799999988 No 69 >3f7c_A Protein of unknown function (DUF416); YP_958225.1, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 2.00A {Marinobacter aquaeolei VT8} Probab=44.49 E-value=15 Score=16.25 Aligned_cols=61 Identities=21% Similarity=0.233 Sum_probs=43.4 Q ss_pred HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 85006653233553013828999999999878883875017889999999999999999999854516 Q gi|254780757|r 238 LKKGIPNEHHRHHLCVFPAYDQCIKASHIFNLLDARGVISTTERQRYILRIRSLAKACGEAFLMTPNG 305 (307) Q Consensus 238 le~~LP~~~~~~~~lvlPAYD~~LKaSH~FNLLDARGaISVTERq~YI~RIR~Lak~~A~ayl~~re~ 305 (307) ++...|...+-...-|+||-|-|.--|.+++.+.++.. +. +..|-.++...-..|++..++ T Consensus 76 lE~~iPd~~dfd~yGvyPA~DAc~AL~~~L~~~l~~~~----~~---a~~iS~lS~~TVa~~iE~~~~ 136 (200) T 3f7c_A 76 LETLCPNVDEYDAYGVYPAFDFCQLLEQALLNRLNPNK----HR---ATEASQLATRTVMDFVEMSEG 136 (200) T ss_dssp HHHHCCCGGGCCSTTHHHHHHHHHHHHHHHHHHHCTTS----CC---HHHHHHHHHHHHHHHHHHHHC T ss_pred HHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCH----HH---HHHHHHHHHHHHHHHHHHHCC T ss_conf 98729990430150562899999999999999876887----88---999999999999999997446 No 70 >1zcz_A Bifunctional purine biosynthesis protein PURH; TM1249; HET: PG4; 1.88A {Thermotoga maritima} SCOP: c.24.1.3 c.97.1.4 Probab=41.59 E-value=6.2 Score=19.15 Aligned_cols=36 Identities=28% Similarity=0.419 Sum_probs=20.4 Q ss_pred CCCCCCCCCCCCCCCCEEEE---EEEEE---CCCCHHHHHHH Q ss_conf 78876554667750011444---45575---79833589999 Q gi|254780757|r 67 RRPLDGRYAENPNRLQHYYQ---FQVII---KPNPLNLQNLY 102 (307) Q Consensus 67 rRP~DgRYGeNPNRlq~y~Q---fQVil---KPsp~niq~lY 102 (307) +.-.|=||||||.-=--.|. +.+++ .+|-.|+.|+- T Consensus 176 ~~~~~LRYGENPHQ~Aa~Y~~~~~~~~~qGKeLSYNNllDad 217 (464) T 1zcz_A 176 REDLQLRYGENPHEKAFVYGKPAFEILHEGKTISFNNILDAE 217 (464) T ss_dssp EECCCCSCSSSTTSCEEEESCCSEEEECSSSCCCHHHHHHHH T ss_pred HCCCCCCCCCCHHHCCEEECCCCHHHHCCCCCCCCCCHHHHH T ss_conf 224677689993331807554318775268887715366289 No 71 >2pib_A Phosphorylated carbohydrates phosphatase TM_1254; 3D-structure, structural genomics, NPPSFA; HET: MSE GOL; 1.73A {Thermotoga maritima MSB8} PDB: 3kbb_A* Probab=39.68 E-value=17 Score=15.93 Aligned_cols=43 Identities=30% Similarity=0.452 Sum_probs=33.6 Q ss_pred ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EE Q ss_conf 579833589999999998199962171798832888700110123217-68 Q gi|254780757|r 91 IKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CW 140 (307) Q Consensus 91 lKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vw 140 (307) -||.|+ .|..-++.+|++| .++-||.|. ++--.+|--.|.- || T Consensus 139 ~Kp~~~----~~~~~~~~~~~~p--~~~~~VGDs-~~Di~~A~~aG~~~i~ 182 (216) T 2pib_A 139 GKPDPE----IYLLVLERLNVVP--EKVVVFEDS-KSGVEAAKSAGIERIY 182 (216) T ss_dssp CTTSTH----HHHHHHHHHTCCG--GGEEEEECS-HHHHHHHHHTTCCEEE T ss_pred CCCCHH----HHHHHHHHCCCCC--CCEEEECCC-HHHHHHHHHCCCCEEE T ss_conf 899689----9999999739882--431798178-8789999986995899 No 72 >1vjr_A 4-nitrophenylphosphatase; TM1742, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.40A {Thermotoga maritima} SCOP: c.108.1.14 PDB: 1pw5_A* Probab=35.61 E-value=21 Score=15.31 Aligned_cols=45 Identities=20% Similarity=0.129 Sum_probs=36.4 Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEEC Q ss_conf 79833589999999998199962171798832888700110123217-6887 Q gi|254780757|r 92 KPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWCD 142 (307) Q Consensus 92 KPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vwld 142 (307) ||+|.- +...++.+|+++ .++-+|-|++.+--.||--.|+. ||.+ T Consensus 195 KP~~~~----~~~~~~~~~~~~--~e~v~vGD~~~~DI~~a~~aGi~tv~V~ 240 (271) T 1vjr_A 195 KPNPLV----VDVISEKFGVPK--ERMAMVGDRLYTDVKLGKNAGIVSILVL 240 (271) T ss_dssp TTSTHH----HHHHHHHHTCCG--GGEEEEESCHHHHHHHHHHHTCEEEEES T ss_pred CCCHHH----HHHHHHHHHHCC--CCCEEECCCCHHHHHHHHHCCCCEEEEC T ss_conf 998689----999998620011--1343655882578999998799599989 No 73 >2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2} Probab=35.51 E-value=21 Score=15.30 Aligned_cols=128 Identities=20% Similarity=0.291 Sum_probs=67.8 Q ss_pred HHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCHHHHH---HHHHHHHHCCCCCCCCCEEEE--ECCC Q ss_conf 74483440167641557887655466775001144445575798335899---999999981999621717988--3288 Q gi|254780757|r 51 RALGPLSWKAAYVQPSRRPLDGRYAENPNRLQHYYQFQVIIKPNPLNLQN---LYIESLKAVGIDPLIHDVRFV--EDNW 125 (307) Q Consensus 51 r~lg~~pw~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQVilKPsp~niq~---lYl~SL~~iGid~~~hDIrFv--eDnW 125 (307) ..-++.|.+.-.+-.|.|+... +....+-.++|.--++--.--++-+ .--.-|+.+|+. +++|. +... T Consensus 218 ~~r~~~piRlFEiGrVFR~D~i---~DatHl~efhQleGlivg~~Vdf~DLKgiLE~lL~~Lg~~----~vkfr~~~s~~ 290 (685) T 2odr_D 218 MNKKPLPFKLFSIDRCFRREQK---EDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQFGFT----NFKFIPDEKKS 290 (685) T ss_dssp TTTSCSCEEEEEEEEEECCCSC---CCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTTTCC----CEEEEECTTCC T ss_pred HHCCCCCEEEEEEEEEEECCCC---CCCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHCCC----CEEEEECCCCC T ss_conf 8479998489964677705775---4454576314589999967747999999999999986788----73999666778 Q ss_pred C--CCHHH-------HCCCCEE-EEECCEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEC Q ss_conf 8--70011-------0123217-6887874147778998668257751456787899999998699821133206 Q gi|254780757|r 126 E--SPTLG-------AWGLGWE-CWCDGMEISQFTYFQQVCGIECSPISGEITYGLERLAMYVQNVNSVYDIVFN 190 (307) Q Consensus 126 E--sPtLG-------AwGlGWE-vwldGMEItQFTYFQQvGGi~c~pv~~EiTYGLERiaMylQ~vdnvyDl~wn 190 (307) . .|..- .++-||= |--=||==- .-. .--||+.....-| -|||||||..-+++++-++... T Consensus 291 Pf~hPg~eaeV~~~~~~~~~WlEIgg~G~vhP--~VL-k~~GId~~V~AFG--LGLERLAMlk~gI~DIR~L~~p 360 (685) T 2odr_D 291 KYYTPETQTEVYAYHPKLKEWLEVATFGVYSP--VAL-SKYGIDVPVMNLG--LGVERLAMISGNFADVREMVYP 360 (685) T ss_dssp TTBCTTCCEEEEEEETTTTEEEEEEEEEEBCH--HHH-HHTTCCSCEEEEE--EEHHHHHHHHTTCSCHHHHHCG T ss_pred CCCCCCEEEEEEEECCCCCEEEEEEECCCCCH--HHH-HHCCCCCCEEEEE--ECHHHHHHHHCCCCHHHHHCCC T ss_conf 88799502799998067983899980665079--999-8769798579999--7789999987399737765156 No 74 >1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} Probab=35.48 E-value=21 Score=15.30 Aligned_cols=132 Identities=20% Similarity=0.251 Sum_probs=78.9 Q ss_pred HHHHHHHHHHHHCCCEEEECCCCC-----CCCCCC--------------------------CHHHHH---HHCC--CCCC Q ss_conf 999999999986695896116754-----333224--------------------------857898---7448--3440 Q gi|254780757|r 15 NIILTLTQYWAQQGCTILQPYDME-----VGAGTF--------------------------HPSTTL---RALG--PLSW 58 (307) Q Consensus 15 ~ii~~L~~fW~~~GC~i~qpyd~e-----~GAgT~--------------------------hp~T~l---r~lg--~~pw 58 (307) -+|.--.++..++|..-+.|=++= .|.|-+ .|-|-+ ..|. .-|. T Consensus 224 ALi~f~ld~l~~~Gy~~v~pP~iV~~~~~~gtGqlPkfe~~~~~~~~~~~~ddl~LipTAEvpL~~~~~~eil~~~~LPi 303 (501) T 1wle_A 224 GLVNFTLNKLIHRGFTPMTVPDLLRGVVFEGCGMTPNAKPSQIYNIDPSRFEDLNLAGTAEVGLAGYFMDHSVAFRDLPI 303 (501) T ss_dssp HHHHHHHHHHHHTTCEEEECCSEECHHHHHHHTCCSSSSSCSSCBBCTTTSSSCEECSSHHHHHHHHHTTEEEEGGGCSE T ss_pred HHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCEEEECCCCCCCCCHHHHHCCCCCCCCC T ss_conf 99999999755259889924355016677554248434312277740443222001032234532023432032000871 Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCEEEEEE-----EEECCCCHHHHH-------HHHHHHHHCCCCCCCCCEEEEECCCC Q ss_conf 167641557887655466775001144445-----575798335899-------99999998199962171798832888 Q gi|254780757|r 59 KAAYVQPSRRPLDGRYAENPNRLQHYYQFQ-----VIIKPNPLNLQN-------LYIESLKAVGIDPLIHDVRFVEDNWE 126 (307) Q Consensus 59 ~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQ-----VilKPsp~niq~-------lYl~SL~~iGid~~~hDIrFveDnWE 126 (307) +.+=+-||.|.--| +|....-|.+-|||. ++.+|+.++..+ ..-+-|+.|||-...-++ - T Consensus 304 k~~a~s~CFR~EAG-~GkdtrGl~RvHQF~KVE~f~~~~p~~e~s~~~~e~~l~~~e~il~~L~LpyRvv~~-------~ 375 (501) T 1wle_A 304 RMVCSSTCYRAETD-TGKEPWGLYRVHHFTKVEMFGVTGPGLEQSSELLEEFLSLQMEILTELGLHFRVLDM-------P 375 (501) T ss_dssp EEEEEEEEECCCCS-CC--CCSSSSCSEEEEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEC-------C T ss_pred CCCCCCCCCCCCCC-CCCCCCCCEEEEECCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC-------C T ss_conf 14312773055634-456776722566214268999836870133999999999999998644885499871-------6 Q ss_pred CCHHHHCC---CCEEEEECCE----EE---HHHHHHHH Q ss_conf 70011012---3217688787----41---47778998 Q gi|254780757|r 127 SPTLGAWG---LGWECWCDGM----EI---SQFTYFQQ 154 (307) Q Consensus 127 sPtLGAwG---lGWEvwldGM----EI---tQFTYFQQ 154 (307) +--||++- .--|||+-|. || |-+|=||- T Consensus 376 sgDLg~~a~kkyDiE~W~P~~~~y~EvsS~Snc~DfQa 413 (501) T 1wle_A 376 TQELGLPAYRKFDIEAWMPGRGRFGEVTSASNCTDFQS 413 (501) T ss_dssp GGGSTTTCSEEEEEEEEETTTTEEEEEEEEEECTTHHH T ss_pred CCCCCHHHHHEEEEEEEECCCCCEEEEEEEECCCCHHH T ss_conf 77767434445768998558897677887703133866 No 75 >2hdo_A Phosphoglycolate phosphatase; NP_784602.1, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.50A {Lactobacillus plantarum} SCOP: c.108.1.6 Probab=33.55 E-value=22 Score=15.08 Aligned_cols=42 Identities=26% Similarity=0.433 Sum_probs=32.8 Q ss_pred ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEEE Q ss_conf 5798335899999999981999621717988328887001101232176 Q gi|254780757|r 91 IKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWEC 139 (307) Q Consensus 91 lKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWEv 139 (307) -||.|+ .|..-++.+|++| .++-||+|. .+--.+|--.|..+ T Consensus 137 ~KP~~~----~~~~~~~~~~~~p--~~~i~IgD~-~~Di~~A~~aGi~~ 178 (209) T 2hdo_A 137 RKPDPL----PLLTALEKVNVAP--QNALFIGDS-VSDEQTAQAANVDF 178 (209) T ss_dssp CTTSSH----HHHHHHHHTTCCG--GGEEEEESS-HHHHHHHHHHTCEE T ss_pred CCCHHH----HHHHHHHHHCCCH--HHEEEEECC-HHHHHHHHHCCCEE T ss_conf 475299----9999999809692--028999089-88999999849919 No 76 >2q9r_A Protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.91A {Shewanella baltica OS155} Probab=33.46 E-value=23 Score=15.07 Aligned_cols=61 Identities=18% Similarity=0.310 Sum_probs=44.5 Q ss_pred HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 85006653233553013828999999999878883875017889999999999999999999854516 Q gi|254780757|r 238 LKKGIPNEHHRHHLCVFPAYDQCIKASHIFNLLDARGVISTTERQRYILRIRSLAKACGEAFLMTPNG 305 (307) Q Consensus 238 le~~LP~~~~~~~~lvlPAYD~~LKaSH~FNLLDARGaISVTERq~YI~RIR~Lak~~A~ayl~~re~ 305 (307) ++...|...+-...-|+||.|-|.--|.+++.+..+.. + -+..|-.++...-..|++..++ T Consensus 77 lE~~~Pd~~d~d~yGvyPA~DAc~AL~~lL~~l~~~~~----~---~a~~iS~lS~~TVa~fie~~~~ 137 (200) T 2q9r_A 77 LEDNTPEPADFEAYGVYPAMDAVVAISTLLGAIQGKIE----E---DIVNISKLSSSTVANYIEAISD 137 (200) T ss_dssp HHHTCCCGGGCCSTTHHHHHHHHHHHHHHHHHHHHTCH----H---HHHTHHHHHHHHHHHHHHHHHC T ss_pred HHHHCCCCHHCCHHCCHHHHHHHHHHHHHHHHHHCCCH----H---HHHHHHHHHHHHHHHHHHHHCC T ss_conf 99748892110150643899999999999998737888----9---9999999999999999998556 No 77 >2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus VF5} Probab=32.89 E-value=23 Score=15.01 Aligned_cols=81 Identities=23% Similarity=0.256 Sum_probs=50.2 Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEE-----EECCCCHHHH-------HHHHHHHHHCCCCCCCCCEEEE Q ss_conf 834401676415578876554667750011444455-----7579833589-------9999999981999621717988 Q gi|254780757|r 54 GPLSWKAAYVQPSRRPLDGRYAENPNRLQHYYQFQV-----IIKPNPLNLQ-------NLYIESLKAVGIDPLIHDVRFV 121 (307) Q Consensus 54 g~~pw~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQV-----ilKPsp~niq-------~lYl~SL~~iGid~~~hDIrFv 121 (307) ..-|.+.+=+-||.|+.-|.||....-|.+-|||.- +.+ |+++. ++..+-++.|||.. |-| T Consensus 248 ~~LP~r~~~~s~cfR~Eags~g~d~~Gl~RvhqF~kve~~~~~~--~~~s~~~~~~~~~~~~~~~~~L~l~~-----rvv 320 (425) T 2dq3_A 248 ENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVKIVH--PDTSYDELEKLVKDAEEVLQLLGLPY-----RVV 320 (425) T ss_dssp TTCCEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEEEEC--GGGHHHHHHHHHHHHHHHHHHHTCCE-----EEE T ss_pred HHCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCEEEECC--CHHHHHHHHHHHHHHHHHHHHCCCCC-----EEE T ss_conf 54884034537877866554576777515432100232466417--33589999999999999999716870-----899 Q ss_pred ECCCCCCHHHHCC---CCEEEEECC Q ss_conf 3288870011012---321768878 Q gi|254780757|r 122 EDNWESPTLGAWG---LGWECWCDG 143 (307) Q Consensus 122 eDnWEsPtLGAwG---lGWEvwldG 143 (307) += -+--||++. .-=|||.-| T Consensus 321 ~~--~~~dlg~~~~~~~DiE~W~P~ 343 (425) T 2dq3_A 321 EL--CTGDLGFSAAKTYDIEVWFPS 343 (425) T ss_dssp EC--CTTTCCTTCSEEEEEEEEEGG T ss_pred EE--CCCCCCCCCCEEECEEEEECC T ss_conf 96--788888764257340777230 No 78 >2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A Probab=32.77 E-value=23 Score=14.99 Aligned_cols=81 Identities=20% Similarity=0.214 Sum_probs=51.9 Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEE-----EEECCCCHHHHHH-------HHHHHHHCCCCCCCCCEEEEE Q ss_conf 3440167641557887655466775001144445-----5757983358999-------999999819996217179883 Q gi|254780757|r 55 PLSWKAAYVQPSRRPLDGRYAENPNRLQHYYQFQ-----VIIKPNPLNLQNL-------YIESLKAVGIDPLIHDVRFVE 122 (307) Q Consensus 55 ~~pw~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQ-----VilKPsp~niq~l-------Yl~SL~~iGid~~~hDIrFve 122 (307) .-|.+.+=+-||.|+.-|.||...--|.+-|||. ++.+|. +.-+. -.+=|+.|||-.+.-+ T Consensus 270 ~LPik~~~~s~cFR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe--~s~~~~e~~~~~~~~i~~~L~lpyrvv~----- 342 (455) T 2dq0_A 270 DLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQFVYSRPE--ESWEWHEKIIRNAEELFQELEIPYRVVN----- 342 (455) T ss_dssp TCSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEEEEECTT--THHHHHHHHHHHHHHHHHHTTCCEEEEE----- T ss_pred HCCCCEEEECCCCCCCCCCCCCCCCHHHHEEECCEEEEEEECCCC--CCHHHHHHHHHHHHHHHHHCCCCEEEEE----- T ss_conf 789202465897886555578764012201221426899834897--3199999999999999997599658988----- Q ss_pred CCCCCCHHHHC---CCCEEEEECCE Q ss_conf 28887001101---23217688787 Q gi|254780757|r 123 DNWESPTLGAW---GLGWECWCDGM 144 (307) Q Consensus 123 DnWEsPtLGAw---GlGWEvwldGM 144 (307) =-+--||+. -.--|||+-|. T Consensus 343 --~~s~dlg~~a~~k~DiE~w~P~~ 365 (455) T 2dq0_A 343 --ICTGDLGYVAAKKYDIEAWMPGQ 365 (455) T ss_dssp --CCGGGSCSSCSEEEEEEEEETTT T ss_pred --ECCCCCCCCCCEEEEEEEEECCC T ss_conf --13766787712189999885577 No 79 >2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A Probab=29.76 E-value=11 Score=17.30 Aligned_cols=117 Identities=15% Similarity=0.127 Sum_probs=57.8 Q ss_pred CCCEEEEECC-CCCCCCCCCCCCCCCCCEEEEEEEEECCCCHHHHH-------HHHHHHH-HCCCCCCCCCEEEEEC-C- Q ss_conf 4401676415-57887655466775001144445575798335899-------9999999-8199962171798832-8- Q gi|254780757|r 56 LSWKAAYVQP-SRRPLDGRYAENPNRLQHYYQFQVIIKPNPLNLQN-------LYIESLK-AVGIDPLIHDVRFVED-N- 124 (307) Q Consensus 56 ~pw~~aYvqP-srRP~DgRYGeNPNRlq~y~QfQVilKPsp~niq~-------lYl~SL~-~iGid~~~hDIrFveD-n- 124 (307) -|.+.+=+.+ |||-.-|-+ ....|+..+.|---+.=-+|+.+.+ .|.+-+. .+|+.. |-|.+ + T Consensus 343 LPlk~~~~s~~~fR~E~g~~-~Gl~Rv~eF~~~E~~~~~t~e~~~e~~~~~l~~~~~if~~~L~L~~-----r~v~~~~~ 416 (522) T 2cja_A 343 IPVKVFDRSGTSHRYESGGI-HGIERVDEFHRIEIVWIGTKEEVLKCAEELHDRYMHIFNDILDIEW-----RKARVTPW 416 (522) T ss_dssp CSEEEEECSSEEECCCSSSC-CCTTSCSEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHTSCCCE-----EEEEC--- T ss_pred CCHHHHHCCCEEEEECCCCC-CCCCEEEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCE-----EEECCCCC T ss_conf 24888740402687457787-7550246778643999956888999999999999999999709845-----99325654 Q ss_pred -------CCCCHHHHC-CCCEEEEEC-------CEEEHHHHHHHH--HCCCCCC------CCHHHHHHHHHHHHHHH Q ss_conf -------887001101-232176887-------874147778998--6682577------51456787899999998 Q gi|254780757|r 125 -------WESPTLGAW-GLGWECWCD-------GMEISQFTYFQQ--VCGIECS------PISGEITYGLERLAMYV 178 (307) Q Consensus 125 -------WEsPtLGAw-GlGWEvwld-------GMEItQFTYFQQ--vGGi~c~------pv~~EiTYGLERiaMyl 178 (307) |+...-++. -..-|+|+. |.||+.+.|..+ .-.++++ ..++=...|+||+...+ T Consensus 417 ~~~~~~~~~~~~~~~~~~yd~E~~lP~~~~~~k~~ev~si~~~gd~~skrf~ik~~~~~~v~~~c~GiGleR~i~al 493 (522) T 2cja_A 417 FMAQEGLLGLAEENTVGTTDYEACLPYRGPDGEWLEFQNVSINGDKYPKGFNVKLQSGDELWSGCSGVGLERWAAVF 493 (522) T ss_dssp -------------CCCEEEEEEECCGGGCTTCCCEEEEEEEECTTHHHHHHTCEETTCCCEEEEEEEEEHHHHHHHH T ss_pred CCCCCCCHHHHHCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCCCCHHCCCCCCCCCEEEEECCCHHHHHHHHHH T ss_conf 45665551123356212402388542567788718998662643426373097389999899937672999999999 No 80 >3mc1_A Predicted phosphatase, HAD family; PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.93A {Clostridium acetobutylicum} Probab=29.53 E-value=26 Score=14.62 Aligned_cols=45 Identities=13% Similarity=0.214 Sum_probs=33.9 Q ss_pred ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEEC Q ss_conf 579833589999999998199962171798832888700110123217-6887 Q gi|254780757|r 91 IKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWCD 142 (307) Q Consensus 91 lKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vwld 142 (307) .||.| ++|...++.+|++| .++-||+|. .+-..+|.-+|+- ||.. T Consensus 141 ~KP~~----~~~~~~l~~~~~~p--~~~l~VgDs-~~Di~aA~~~Gi~ti~v~ 186 (226) T 3mc1_A 141 LSTKE----DVIRYAMESLNIKS--DDAIMIGDR-EYDVIGALKNNLPSIGVT 186 (226) T ss_dssp SCSHH----HHHHHHHHHHTCCG--GGEEEEESS-HHHHHHHHTTTCCEEEES T ss_pred CCCCH----HHHHHHHHHCCCCC--CCCEEECCC-HHHHHHHHHCCCEEEEEC T ss_conf 69889----99999999703486--546275267-777999998699699988 No 81 >1wdi_A Hypothetical protein TT0907; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; HET: CIT; 2.10A {Thermus thermophilus} SCOP: e.53.1.1 Probab=29.41 E-value=21 Score=15.28 Aligned_cols=27 Identities=26% Similarity=0.486 Sum_probs=16.3 Q ss_pred HHHHHHHCCCCCCEEEEECCCCCCCCCC Q ss_conf 5789874483440167641557887655 Q gi|254780757|r 46 PSTTLRALGPLSWKAAYVQPSRRPLDGR 73 (307) Q Consensus 46 p~T~lr~lg~~pw~~aYvqPsrRP~DgR 73 (307) --.+++.+++..|. |.+.|+||..-|. T Consensus 81 Eilll~~~~~~~w~-al~k~~kk~k~G~ 107 (345) T 1wdi_A 81 EILLVRERSPGLWE-ALLGPARKAPPGT 107 (345) T ss_dssp EEEECBCC-------CCBCCCSCCCSCE T ss_pred EEEEEECCCCCCEE-EEECCCCCCCCCC T ss_conf 99986325787304-5303556789898 No 82 >2x4d_A HLHPP, phospholysine phosphohistidine inorganic pyrophosphate phosphatase; hydrolase; 1.92A {Homo sapiens} Probab=29.35 E-value=26 Score=14.60 Aligned_cols=47 Identities=23% Similarity=0.437 Sum_probs=30.9 Q ss_pred EECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEEC Q ss_conf 7579833589999999998199962171798832888700110123217-6887 Q gi|254780757|r 90 IIKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWCD 142 (307) Q Consensus 90 ilKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vwld 142 (307) .-||+| +.|...++.+|+++ +++-+|-|++.+--.||--.|+. ||.+ T Consensus 188 ~~Kp~~----~~~~~~~~~~~~~~--~~~~~VGD~~~~Di~~Ak~aG~~ti~v~ 235 (271) T 2x4d_A 188 VGKPSP----EFFKSALQAIGVEA--HQAVMIGDDIVGDVGGAQRCGMRALQVR 235 (271) T ss_dssp ESTTCH----HHHHHHHHHHTCCG--GGEEEEESCTTTTHHHHHHTTCEEEEES T ss_pred CCCCCH----HHHHHHHHHHCCCC--CEEEEECCCCHHHHHHHHHCCCEEEEEC T ss_conf 567887----99999998718886--3268975894778999998799499988 No 83 >2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2} Probab=29.22 E-value=26 Score=14.59 Aligned_cols=127 Identities=22% Similarity=0.297 Sum_probs=69.4 Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCH---HHHHHHHHHHHHCCCCCCCCCEEE--EECCCC- Q ss_conf 48344016764155788765546677500114444557579833---589999999998199962171798--832888- Q gi|254780757|r 53 LGPLSWKAAYVQPSRRPLDGRYAENPNRLQHYYQFQVIIKPNPL---NLQNLYIESLKAVGIDPLIHDVRF--VEDNWE- 126 (307) Q Consensus 53 lg~~pw~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQVilKPsp~---niq~lYl~SL~~iGid~~~hDIrF--veDnWE- 126 (307) -++.|.+.-.+-.|.|+... +...++-.++|.-.++--..- +....-..-|+.+|+. +++| .+.... T Consensus 220 r~~~piRlFeiGrVFR~D~i---~DatHl~~FhQ~EGlvvg~~Vdf~DLKgiLe~lL~~Lg~~----~vkfr~~~s~~Pf 292 (701) T 2odr_C 220 KKPLPFKLFSIDRCFRREQK---EDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQFGFT----NFKFIPDEKKSKY 292 (701) T ss_dssp TSCSCEEEEEEEEEECCCSC---CCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTTTCC----CEEEEECTTCCTT T ss_pred CCCCCEEEEEEEEEEECCCC---CCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCC----CEEEEECCCCCCC T ss_conf 79998499987666725762---4255784246789999858868999999999999996787----7299965778899 Q ss_pred -CCHH-------HHCCCCE-EEEECCEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECC Q ss_conf -7001-------1012321-768878741477789986682577514567878999999986998211332068 Q gi|254780757|r 127 -SPTL-------GAWGLGW-ECWCDGMEISQFTYFQQVCGIECSPISGEITYGLERLAMYVQNVNSVYDIVFNA 191 (307) Q Consensus 127 -sPtL-------GAwGlGW-EvwldGMEItQFTYFQQvGGi~c~pv~~EiTYGLERiaMylQ~vdnvyDl~wn~ 191 (307) .|.. +.++-|| ||--=|| |.. .- ..-.||+..... .--|||||||-.-+++++-++...+ T Consensus 293 ~hPg~eaeV~~~~~~~~~WlEIgg~Gm-vhP-~V-L~~~GId~~V~A--fGLGLERLAMlkygI~DIR~L~~P~ 361 (701) T 2odr_C 293 YTPETQTEVYAYHPKLKEWLEVATFGV-YSP-VA-LSKYGIDVPVMN--LGLGVERLAMISGNFADVREMVYPQ 361 (701) T ss_dssp BCTTCCEEEEEEETTTTEEEEEEEEEE-BCH-HH-HHHTTCCSCEEE--EEEEHHHHHHHHTTCSCHHHHHCGG T ss_pred CCCCEEEEEEEEECCCCEEEEEECCCC-CCH-HH-HHHCCCCCCEEE--EEECHHHHHHHHCCCCHHHHHHCCC T ss_conf 899135899999465994899965754-079-99-987697986799--9877899999873991777761577 No 84 >1g8m_A Aicar transformylase-IMP cyclohydrolase; homodimer, 2 functional domains, IMPCH domain = alpha/beta/alpha; HET: G; 1.75A {Gallus gallus} SCOP: c.24.1.3 c.97.1.4 PDB: 1thz_A* 2b1g_A* 2b1i_A* 2iu0_A* 2iu3_A* 1m9n_A* 1oz0_A* 1pkx_A* 1p4r_A* 1pl0_A* Probab=27.19 E-value=28 Score=14.35 Aligned_cols=34 Identities=26% Similarity=0.300 Sum_probs=21.5 Q ss_pred CCCCCCCCCCCCCCEEE-------EEEE-EECCCCHHHHHHH Q ss_conf 87655466775001144-------4455-7579833589999 Q gi|254780757|r 69 PLDGRYAENPNRLQHYY-------QFQV-IIKPNPLNLQNLY 102 (307) Q Consensus 69 P~DgRYGeNPNRlq~y~-------QfQV-ilKPsp~niq~lY 102 (307) ..+=||||||.-=--+| .+++ -=|||-.|+.|+. T Consensus 204 ~~~LRYGENPHQ~Aa~y~~~~~~~~~~~~~g~~SYNN~lD~d 245 (593) T 1g8m_A 204 QLPLRYGMNPHQSPAQLYTTRPKLPLTVVNGSPGFINLCDAL 245 (593) T ss_dssp EEEESCSSSTTSCCEEEECSSSSCSEEEEESCCCHHHHHHHH T ss_pred CCCCCCCCCHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHH T ss_conf 566637888445536521568642788863256632356679 No 85 >2qlt_A (DL)-glycerol-3-phosphatase 1; APC7326, RHR2P, structural genomics, PSI-2, protein structure initiative; 1.60A {Saccharomyces cerevisiae} Probab=26.18 E-value=30 Score=14.22 Aligned_cols=47 Identities=19% Similarity=0.188 Sum_probs=34.7 Q ss_pred ECCCCHHHHHHHHHHHHHCCCCCCC-----CCEEEEECCCCCCHHHHCCCCEE-EEEC Q ss_conf 5798335899999999981999621-----71798832888700110123217-6887 Q gi|254780757|r 91 IKPNPLNLQNLYIESLKAVGIDPLI-----HDVRFVEDNWESPTLGAWGLGWE-CWCD 142 (307) Q Consensus 91 lKPsp~niq~lYl~SL~~iGid~~~-----hDIrFveDnWEsPtLGAwGlGWE-vwld 142 (307) -||.| +.|+.-++.+|+.+.+ .++-||+|.. +--.+|...|-. |++. T Consensus 169 ~KP~P----d~~~~a~~~Lg~~~~e~~~~p~~~l~IGDs~-~Di~aAk~aG~~~I~v~ 221 (275) T 2qlt_A 169 GKPHP----EPYLKGRNGLGFPINEQDPSKSKVVVFEDAP-AGIAAGKAAGCKIVGIA 221 (275) T ss_dssp CTTSS----HHHHHHHHHTTCCCCSSCGGGSCEEEEESSH-HHHHHHHHTTCEEEEES T ss_pred CCCCH----HHHHHHHHHCCCCCCCCCCCCCCEEEECCCH-HHHHHHHHCCCEEEEEC T ss_conf 99986----9999999980997332469965589985888-89999998699899989 No 86 >1gji_A C-REL protein, C-REL proto-oncogene protein; NF-KB/DNA complex, transcription factor, C-REL homodimer, transcription/DNA complex; 2.85A {Gallus gallus} SCOP: b.1.18.1 b.2.5.3 Probab=25.90 E-value=17 Score=15.99 Aligned_cols=14 Identities=14% Similarity=0.318 Sum_probs=6.1 Q ss_pred CCCCCCHHHHHHHH Q ss_conf 25775145678789 Q gi|254780757|r 158 IECSPISGEITYGL 171 (307) Q Consensus 158 i~c~pv~~EiTYGL 171 (307) +.+.||....-|.. T Consensus 158 ~~~~pV~S~pI~d~ 171 (275) T 1gji_A 158 LALPPLISNPIYDN 171 (275) T ss_dssp EECCCEECCCEEBT T ss_pred ECCCCEECCCEECC T ss_conf 03686561451058 No 87 >3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* Probab=25.85 E-value=20 Score=15.50 Aligned_cols=77 Identities=19% Similarity=0.243 Sum_probs=37.7 Q ss_pred HHHHCCCCCCCCCEEEEECC--CCCCHHHHC---CCCEEEEEC-CEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 99981999621717988328--887001101---232176887-874147778998668257751456787899999998 Q gi|254780757|r 105 SLKAVGIDPLIHDVRFVEDN--WESPTLGAW---GLGWECWCD-GMEISQFTYFQQVCGIECSPISGEITYGLERLAMYV 178 (307) Q Consensus 105 SL~~iGid~~~hDIrFveDn--WEsPtLGAw---GlGWEvwld-GMEItQFTYFQQvGGi~c~pv~~EiTYGLERiaMyl 178 (307) -|+.++.. +-.+||+.+. |-.|..-|- .-+|--++. || |-. ...+.+| ++- ++..-.--||||+||-. T Consensus 214 ll~~l~~~--~~~~r~~~~~fPft~Ps~e~~I~~~~~wiei~g~G~-vhP-~Vl~~~g-~~~-~~g~AFGlGleRlaml~ 287 (415) T 3cmq_A 214 LMAHLFGD--ELEIRWVDCYFPFTHPSFEMEINFHGEWLEVLGCGV-MEQ-QLVNSAG-AQD-RIGWAFGLGLERLAMIL 287 (415) T ss_dssp HHHHHHCT--TCCEEEEEEEETTEEEEEEEEEEETTEEEEEEEEEE-ECH-HHHHHTT-CTT-EEEEEEEEEHHHHHHHH T ss_pred HHHHHCCC--CCEEEEEECCCCCCCCCEEEEEEECCCCCEEEEEEC-CCH-HHHHHCC-CCC-CEEEEEEEECCHHHHHH T ss_conf 99996798--757998407898767632799998885666878602-579-9998659-987-65899987325788876 Q ss_pred CCCCCEEEE Q ss_conf 699821133 Q gi|254780757|r 179 QNVNSVYDI 187 (307) Q Consensus 179 Q~vdnvyDl 187 (307) -+++++-++ T Consensus 288 ~~i~DiR~~ 296 (415) T 3cmq_A 288 YDIPDIRLF 296 (415) T ss_dssp SCCCCGGGG T ss_pred CCCCHHHHH T ss_conf 164248888 No 88 >2hi0_A Putative phosphoglycolate phosphatase; YP_619066.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.51A {Lactobacillus delbrueckii} Probab=25.32 E-value=31 Score=14.11 Aligned_cols=45 Identities=20% Similarity=0.241 Sum_probs=35.3 Q ss_pred ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEEC Q ss_conf 579833589999999998199962171798832888700110123217-6887 Q gi|254780757|r 91 IKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWCD 142 (307) Q Consensus 91 lKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vwld 142 (307) -||.|. .|..-++.+|++|. ++-||.|+ .+--.+|--.|.- ||.. T Consensus 164 ~kpk~~----~~~~~~~~~g~~p~--~~i~VGDs-~~Di~~a~~aG~~~i~v~ 209 (240) T 2hi0_A 164 RKPAPD----MTSECVKVLGVPRD--KCVYIGDS-EIDIQTARNSEMDEIAVN 209 (240) T ss_dssp CTTSSH----HHHHHHHHHTCCGG--GEEEEESS-HHHHHHHHHTTCEEEEES T ss_pred CCCCCH----HHHHHHHHHCCCCC--CEEEEECC-HHHHHHHHHCCCEEEEEC T ss_conf 555722----56899999499854--15999278-878999998699699988 No 89 >1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A Probab=23.84 E-value=16 Score=16.15 Aligned_cols=71 Identities=15% Similarity=0.074 Sum_probs=43.2 Q ss_pred HHHHHHHHHHHHCCCCCCCCCEEEEECCCC-----CCHHHHCCCCEEEEECCEEEHHHHHHHHHCCCCCC--CCHHHHH Q ss_conf 589999999998199962171798832888-----70011012321768878741477789986682577--5145678 Q gi|254780757|r 97 NLQNLYIESLKAVGIDPLIHDVRFVEDNWE-----SPTLGAWGLGWECWCDGMEISQFTYFQQVCGIECS--PISGEIT 168 (307) Q Consensus 97 niq~lYl~SL~~iGid~~~hDIrFveDnWE-----sPtLGAwGlGWEvwldGMEItQFTYFQQvGGi~c~--pv~~EiT 168 (307) ...+--+++|+-|||+..+. +.+--|.-+ ---|-+-|+-+-+.|.--||.+..-=|+..|..|. .-+.+.. T Consensus 76 e~~~~I~edL~WLGl~wDe~-~~~QSer~~~Y~~~a~~Li~~G~AY~C~cs~eel~~~r~~~~~~g~~~~~r~~~~~~~ 153 (553) T 1qtq_A 76 EYVESIKNDVEWLGFHWSGN-VRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYRDRSVEEN 153 (553) T ss_dssp HHHHHHHHHHHHTTCCCSSS-CEEGGGGHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHCCSSSCCCCCTTTTCCHHHH T ss_pred HHHHHHHHHHHHCCCCCCCC-CEEHHHCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC T ss_conf 99999999999779989988-5022115999999999999869957557899999998877872799999776431367 No 90 >2hx1_A Predicted sugar phosphatases of the HAD superfamily; ZP_00311070.1, possible sugar phosphatase, structural genomics; HET: MSE EPE; 2.10A {Cytophaga hutchinsonii} Probab=22.54 E-value=34 Score=13.75 Aligned_cols=50 Identities=20% Similarity=0.310 Sum_probs=31.9 Q ss_pred EEEEECCCCHHHHHHHHHHH-HHCCCCCCCCCEEEEECCCCCCHHHHCCCCEEE Q ss_conf 45575798335899999999-981999621717988328887001101232176 Q gi|254780757|r 87 FQVIIKPNPLNLQNLYIESL-KAVGIDPLIHDVRFVEDNWESPTLGAWGLGWEC 139 (307) Q Consensus 87 fQVilKPsp~niq~lYl~SL-~~iGid~~~hDIrFveDnWEsPtLGAwGlGWEv 139 (307) ..++=||+|.-.+.. ++.| +.+|+++ .++-+|-|+.++--+||--.||-- T Consensus 199 ~~~~GKP~~~~f~~a-l~~l~~~~~~~~--~~~lmIGD~l~tDI~gA~~~G~~s 249 (284) T 2hx1_A 199 FIRFGKPDSQMFMFA-YDMLRQKMEISK--REILMVGDTLHTDILGGNKFGLDT 249 (284) T ss_dssp EEEESTTSSHHHHHH-HHHHHTTSCCCG--GGEEEEESCTTTHHHHHHHHTCEE T ss_pred CCCCCCCHHHHHHHH-HHHHHHCCCCCC--CEEEEECCCCHHHHHHHHHCCCCE T ss_conf 635789807888889-999743047896--639999289178999999869989 No 91 >2oiz_D Aromatic amine dehydrogenase, small subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_D* 2agx_D* 2agl_D* 2agz_D* 2ah0_D* 2ah1_D* 2h3x_B* 2h47_B* 2hj4_D* 2hjb_D* 2hkm_D* 2hxc_D* 2iaa_B* 2iup_D* 2iuq_D* 2iur_D* 2iuv_D* 2agy_D* 2ok4_D* 2ok6_D* ... Probab=20.86 E-value=30 Score=14.12 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=18.7 Q ss_pred CCCCCCEEEEECCCCCCCCCC Q ss_conf 483440167641557887655 Q gi|254780757|r 53 LGPLSWKAAYVQPSRRPLDGR 73 (307) Q Consensus 53 lg~~pw~~aYvqPsrRP~DgR 73 (307) -|.+|=.+..|--||-|.||| T Consensus 53 PGt~~s~isWVGtC~NP~Dgk 73 (135) T 2oiz_D 53 PGSTPSPISXIGTCHNPHDGK 73 (135) T ss_dssp TTCEEEEEEEEEEEECTTTCC T ss_pred CCCCCCCCCEEEEECCCCCCC T ss_conf 988557530025634899987 No 92 >1v54_F VI, cytochrome C oxidase polypeptide VB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: g.41.5.3 PDB: 1oco_F* 1occ_F* 1ocz_F* 1ocr_F* 1v55_F* 2dyr_F* 2dys_F* 2eij_F* 2eik_F* 2eil_F* 2eim_F* 2ein_F* 2occ_F* 2zxw_F* 3abk_F* 3abl_F* 3abm_F* 3ag1_F* 3ag2_F* 3ag3_F* ... Probab=20.86 E-value=36 Score=13.62 Aligned_cols=25 Identities=36% Similarity=0.539 Sum_probs=12.0 Q ss_pred CCHHHHHHHHHHHHHH--HCCCCCEEEE Q ss_conf 5145678789999999--8699821133 Q gi|254780757|r 162 PISGEITYGLERLAMY--VQNVNSVYDI 187 (307) Q Consensus 162 pv~~EiTYGLERiaMy--lQ~vdnvyDl 187 (307) |--.|..-||||.-|- ++++| +||+ T Consensus 7 Ptd~EqATGlEr~ella~~~g~D-~fd~ 33 (98) T 1v54_F 7 PTDEEQATGLEREVMLAARKGQD-PYNI 33 (98) T ss_dssp CCHHHHCCHHHHHHHHHHHTTCC-TTCC T ss_pred CCHHHHHHHHHHHHHHHHHCCCC-HHHC T ss_conf 98788711378999999855997-1114 No 93 >1yy3_A S-adenosylmethionine:tRNA ribosyltransferase- isomerase; beta-barrel, QUEA, quein queuosine, tRNA- modification; 2.88A {Bacillus subtilis} Probab=20.36 E-value=30 Score=14.13 Aligned_cols=14 Identities=7% Similarity=0.365 Sum_probs=7.5 Q ss_pred HHHHHHHCCCCCCC Q ss_conf 77899866825775 Q gi|254780757|r 149 FTYFQQVCGIECSP 162 (307) Q Consensus 149 FTYFQQvGGi~c~p 162 (307) .-++++.|-+.+-| T Consensus 143 ~~~l~~~G~~PLPP 156 (346) T 1yy3_A 143 YEVLESLGEMPLPP 156 (346) T ss_dssp HHHHHHHHTCCCCH T ss_pred HHHHHHCCCCCCCC T ss_conf 99999728999995 Done!