Query         gi|254780757|ref|YP_003065170.1| glycyl-tRNA synthetase subunit alpha [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 307
No_of_seqs    141 out of 623
Neff          3.4 
Searched_HMMs 13730
Date          Wed Jun  1 06:30:48 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780757.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1j5wa_ d.104.1.1 (A:) Glycyl- 100.0       0       0 1223.2  22.5  281   11-305     1-281 (281)
  2 d1riqa2 d.104.1.1 (A:1-236) Al  98.0 2.3E-06 1.7E-10   63.9   4.4  164   10-185     1-236 (236)
  3 d1qq5a_ c.108.1.1 (A:) L-2-Hal  88.9    0.16 1.2E-05   28.9   3.3   44   92-142   147-191 (245)
  4 d2gfha1 c.108.1.6 (A:1-247) N-  84.8    0.59 4.3E-05   24.8   4.3   47   91-143   163-211 (247)
  5 d1n9wa2 d.104.1.1 (A:111-414)   84.0    0.34 2.5E-05   26.5   2.8   61   13-73     18-96  (304)
  6 d1eova2 d.104.1.1 (A:205-557)   83.9    0.43 3.1E-05   25.8   3.3   59  131-189   260-343 (353)
  7 d1wvia_ c.108.1.14 (A:) Putati  83.0    0.88 6.4E-05   23.5   4.6   44   92-141   180-224 (253)
  8 d2g80a1 c.108.1.22 (A:17-241)   77.1     1.2 8.7E-05   22.6   3.7   44   92-142   159-203 (225)
  9 d1x42a1 c.108.1.1 (A:1-230) Hy  76.7     2.1 0.00015   20.8   4.8   47   90-142   153-200 (230)
 10 d2c4na1 c.108.1.14 (A:1-250) N  74.9     2.6 0.00019   20.2   4.9   49   87-141   171-219 (250)
 11 d1yv9a1 c.108.1.14 (A:4-256) P  74.7     1.9 0.00014   21.1   4.2   46   90-141   178-223 (253)
 12 d2b0ca1 c.108.1.2 (A:8-204) Pu  74.0     2.8 0.00021   19.9   4.9   89   48-143    91-186 (197)
 13 d2fdra1 c.108.1.6 (A:3-224) Hy  72.1     1.7 0.00012   21.5   3.4   45   91-142   140-185 (222)
 14 d1zrna_ c.108.1.1 (A:) L-2-Hal  71.5     1.5 0.00011   22.0   3.0   87   48-142   100-193 (220)
 15 d1zd3a1 c.108.1.2 (A:2-224) Ep  70.2     1.7 0.00012   21.5   3.0   96   41-143    97-204 (225)
 16 d1seta2 d.104.1.1 (A:111-421)   70.1     3.1 0.00022   19.6   4.4  111   55-189   133-265 (311)
 17 d1jjca_ d.104.1.1 (A:) Phenyl-  67.6     0.7 5.1E-05   24.3   0.7  129   53-190   105-253 (266)
 18 d1zcza2 c.97.1.4 (A:158-452) A  67.6     2.1 0.00016   20.8   3.1   32   71-102    11-48  (295)
 19 d1nnha_ d.104.1.1 (A:) Hypothe  65.8     0.4 2.9E-05   26.0  -0.9  171   14-189    18-282 (293)
 20 d2go7a1 c.108.1.6 (A:3-206) Hy  64.3     3.1 0.00022   19.6   3.4   44   91-141   136-179 (204)
 21 d1g5ha2 d.104.1.1 (A:41-330) T  59.6     1.7 0.00012   21.5   1.4  117   52-177   134-282 (290)
 22 d1o08a_ c.108.1.6 (A:) beta-Ph  57.6     5.1 0.00037   18.1   3.6   45   91-142   144-189 (221)
 23 d1te2a_ c.108.1.6 (A:) Phospha  56.9     5.3 0.00039   17.9   3.6   44   91-141   143-186 (218)
 24 d1cr6a1 c.108.1.2 (A:4-225) Ep  56.9     5.9 0.00043   17.6   4.4   88   48-142   104-201 (222)
 25 d1c0aa3 d.104.1.1 (A:107-287,A  54.7     0.8 5.9E-05   23.8  -0.9   60   14-73     36-116 (346)
 26 d1e1oa2 d.104.1.1 (A:161-502)   54.2    0.79 5.7E-05   23.9  -1.0   74   14-91     27-121 (342)
 27 d1l0wa3 d.104.1.1 (A:105-294,A  53.8    0.84 6.1E-05   23.7  -0.9  173   14-190    44-324 (356)
 28 d1zs9a1 c.108.1.22 (A:4-256) E  49.8     7.5 0.00055   16.8   3.4   88   47-142   133-228 (253)
 29 d2hdoa1 c.108.1.6 (A:1-207) Ph  44.1     9.1 0.00066   16.2   3.5   44   91-141   136-179 (207)
 30 d1b8aa2 d.104.1.1 (A:104-438)   43.9     1.8 0.00013   21.4  -0.5   58   14-71     38-114 (335)
 31 d1vjra_ c.108.1.14 (A:) Hypoth  43.8     7.8 0.00057   16.7   2.7   45   91-141   184-229 (261)
 32 d1g8ma2 c.97.1.4 (A:201-593) A  37.2      11 0.00083   15.5   3.4   30   73-102     8-45  (393)
 33 d1b76a2 d.104.1.1 (A:1-394) Gl  33.0       8 0.00059   16.6   1.4  126   49-178   138-308 (331)
 34 d1gtra2 c.26.1.1 (A:8-338) Glu  32.8     5.2 0.00038   18.0   0.4   60   95-160    67-136 (331)
 35 d1v54f_ g.41.5.3 (F:) Cytochro  26.9      13 0.00098   15.0   1.7   27  162-189     7-35  (98)
 36 d2fi1a1 c.108.1.3 (A:4-190) Pu  25.4      18  0.0013   14.1   2.6   46   91-145   133-179 (187)
 37 d1u7la_ e.57.1.1 (A:) Vacuolar  24.7      13 0.00096   15.0   1.3   20   91-110   191-210 (388)
 38 d1wdia_ e.53.1.1 (A:) Queuosin  23.7      19  0.0014   13.9   2.2   25   48-73     82-106 (344)
 39 d2cyga1 c.1.8.3 (A:29-340) Pla  23.2      19  0.0014   13.8   3.2   15  276-290   248-262 (312)
 40 d1prtb1 b.40.2.1 (B:90-199) Pe  22.9      12 0.00087   15.4   0.8   57   62-136    41-98  (110)
 41 d1my7a_ b.1.18.1 (A:) p65 subu  21.8      13 0.00094   15.1   0.8   18  109-126    25-44  (107)
 42 d2ns0a1 a.4.5.76 (A:1-85) Hypo  21.6      17  0.0012   14.2   1.4   29   39-68     19-48  (85)
 43 d1v29a_ d.149.1.1 (A:) Cobalt-  20.9      21  0.0016   13.5   4.6   49  254-302    10-64  (203)
 44 d2f6ma1 a.2.17.1 (A:322-385) V  20.3      22  0.0016   13.4   2.0   20  272-294    29-48  (64)

No 1  
>d1j5wa_ d.104.1.1 (A:) Glycyl-tRNA synthetase (GlyRS) alpha chain {Thermotoga maritima [TaxId: 2336]}
Probab=100.00  E-value=0  Score=1223.22  Aligned_cols=281  Identities=58%  Similarity=1.037  Sum_probs=278.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEE
Q ss_conf             77999999999999866958961167543332248578987448344016764155788765546677500114444557
Q gi|254780757|r   11 LSFQNIILTLTQYWAQQGCTILQPYDMEVGAGTFHPSTTLRALGPLSWKAAYVQPSRRPLDGRYAENPNRLQHYYQFQVI   90 (307)
Q Consensus        11 ~~fq~ii~~L~~fW~~~GC~i~qpyd~e~GAgT~hp~T~lr~lg~~pw~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQVi   90 (307)
                      |+|||||++||+||+++||+|+||||+|||||||||+||||+||||||++|||||||||+|||||+||||||||||||||
T Consensus         1 m~fq~~i~~L~~~W~~~gC~i~qpyd~evGAgT~~p~T~lr~lgp~pw~~ayvqpsrRP~DgRYg~NPNRlq~y~QfQVi   80 (281)
T d1j5wa_           1 MYLQDVIMKLNDFWASKGCLLEQPYDMEVGAGTFHPATFFGSLRKGPWKVAYVQPSRRPTDGRYGENPNRLQRYFQYQVI   80 (281)
T ss_dssp             CCHHHHHHHHHHHHHHTTCEECCCCSSCCSSGGGSHHHHTGGGCSSCEEEEEEEEEECCC-----CCTTCCSEEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHEEEE
T ss_conf             96899999999999878978977765544646687588874049987532343556688654335892044345530235


Q ss_pred             ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEEEEECCEEEHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf             57983358999999999819996217179883288870011012321768878741477789986682577514567878
Q gi|254780757|r   91 IKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWECWCDGMEISQFTYFQQVCGIECSPISGEITYG  170 (307)
Q Consensus        91 lKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWEvwldGMEItQFTYFQQvGGi~c~pv~~EiTYG  170 (307)
                      |||||+|+|+|||+||++||||+++||||||||||||||||||||||||||||||||||||||||||++|+||++|||||
T Consensus        81 ~KPsp~n~q~lyL~SL~~igid~~~hDIrfvEDnWEsPtlGAwGlGWEVwldGMEItQFTYFQQvGg~~c~pv~~EiTYG  160 (281)
T d1j5wa_          81 IKPSPENSQELYLESLEYLGINLKEHDIRFVEDNWESPTLGAWGVGWEVWLDGMEITQFTYFQQIGGISLKDIPLEITYG  160 (281)
T ss_dssp             EESCCSSHHHHHHHHHHHTTCCTTTSCEEEEEECCEEGGGTEEEEEEEEEETTEEEEEEEEEEEBTTBCCSSCCEEEEEE
T ss_pred             ECCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCEEEEEEEEECCEEEEEEEHHHHHCCCCCCCCCHHHHHH
T ss_conf             05894128999999999819993214257873167687602102224788767366532163563683256530554432


Q ss_pred             HHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             99999998699821133206888788311062447469977763501798999999999999999998500665323355
Q gi|254780757|r  171 LERLAMYVQNVNSVYDIVFNAIEGQNVLYGDIFAQSEQEYSRYNFEYANPEILHNHFIDSEKECLDLLKKGIPNEHHRHH  250 (307)
Q Consensus       171 LERiaMylQ~vdnvyDl~wn~~~~~~vtYGdif~q~E~E~S~YNFE~Ad~~~L~~~F~~yE~Ea~rLle~~LP~~~~~~~  250 (307)
                      |||||||||+|||||||.||    +++||||||+|+|+|||+||||+||+++|+++|++||+||++|++++||       
T Consensus       161 LERiaMylQ~vd~v~Dl~wn----~~vtYgDvf~q~E~E~S~YNFE~Ad~~~L~~~F~~yE~Ea~~Lle~~L~-------  229 (281)
T d1j5wa_         161 LERIAMYLQGVDNVYEVQWN----ENVKYGDVFLENEREFSVFNFEEANVGLLFRHFDEYEKEFYRLVEKNLY-------  229 (281)
T ss_dssp             HHHHHHHHHTCSSGGGCEEE----TTEEHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCH-------
T ss_pred             HHHHHHHHHCCCHHEEEECC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------
T ss_conf             89999998486404032224----8944679887769999998698731999999999999999999865998-------


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             3013828999999999878883875017889999999999999999999854516
Q gi|254780757|r  251 LCVFPAYDQCIKASHIFNLLDARGVISTTERQRYILRIRSLAKACGEAFLMTPNG  305 (307)
Q Consensus       251 ~lvlPAYD~~LKaSH~FNLLDARGaISVTERq~YI~RIR~Lak~~A~ayl~~re~  305 (307)
                         +||||+||||||+||||||||||||||||+||+|||+|||+||++|+++|+.
T Consensus       230 ---lPAYD~~LKaSH~FNLLDARGaISVTERa~YI~RIR~LAk~~a~~yle~r~n  281 (281)
T d1j5wa_         230 ---LPAYDYILKCSHTFNLLDARGAISVSQRQTYVKRIQAMARKAARVFLEVQAN  281 (281)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             ---CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             ---5279999998878764611688548998999999999999999999986459


No 2  
>d1riqa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]}
Probab=98.02  E-value=2.3e-06  Score=63.93  Aligned_cols=164  Identities=21%  Similarity=0.246  Sum_probs=110.2

Q ss_pred             CCCHHHHHHHHHHHHHHCCCEEEECCCCC---------CCCC--CCCHHHHHHHCCCCCCEEEEECCCCCCCC----C--
Q ss_conf             77799999999999986695896116754---------3332--24857898744834401676415578876----5--
Q gi|254780757|r   10 DLSFQNIILTLTQYWAQQGCTILQPYDME---------VGAG--TFHPSTTLRALGPLSWKAAYVQPSRRPLD----G--   72 (307)
Q Consensus        10 ~~~fq~ii~~L~~fW~~~GC~i~qpyd~e---------~GAg--T~hp~T~lr~lg~~pw~~aYvqPsrRP~D----g--   72 (307)
                      .|+-++|-.+--+|.+++|+.++.++.+=         +.||  -|-|. |+...-|..-+++-+|+|-|-.|    .  
T Consensus         1 ~mt~~eiR~~Fl~FF~~~gH~~v~s~slvp~~DptlLFtnAGM~~Fkp~-flG~~~p~~~r~~~~QkCiR~~gk~nDld~   79 (236)
T d1riqa2           1 SLSAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNV-FLGLEKRPYKRATSCQKCLRVSGKHNDLEQ   79 (236)
T ss_dssp             CCCHHHHHHHHHHHHHHTTCEECCCCCSSCTTCTTCSSCCSTTGGGHHH-HTTSSCCSCSEEEEEEEEECEETTEECTTT
T ss_pred             CCCHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCEEEECCCCHHHHHH-HCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf             9988999999999998679988578773569999746541010222666-467645677764443214011674302231


Q ss_pred             -------------------------------------CCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf             -------------------------------------5466775001144445575798335899999999981999621
Q gi|254780757|r   73 -------------------------------------RYAENPNRLQHYYQFQVIIKPNPLNLQNLYIESLKAVGIDPLI  115 (307)
Q Consensus        73 -------------------------------------RYGeNPNRlq~y~QfQVilKPsp~niq~lYl~SL~~iGid~~~  115 (307)
                                                           .+|-.|+||.--     +-+.    -.+.+--=++.+||++. 
T Consensus        80 VG~t~rH~TfFEMLGn~SFgdYfK~eai~~awe~lt~~l~l~~~rl~vt-----v~~~----D~e~~~~w~~~~gi~~~-  149 (236)
T d1riqa2          80 VGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPKEKLYVS-----VYKD----DEEAYRIWNEHIGIPSE-  149 (236)
T ss_dssp             TTTSSSCCSEEEEEEEEESSSCCHHHHHHHHHHHHHHTSCCCGGGEEEE-----EETT----CHHHHHHHHTTTCCCGG-
T ss_pred             CCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEE-----EECC----CHHHHHHHHHHCCCCCC-
T ss_conf             3876531105554352013860288899999999888851576424787-----5157----48998888760482004-


Q ss_pred             CCEEEE---ECCCCCCHHHHCCCCEEEEECC----------EEEHHHHHHH---HHCCC--CCCCCHHHHHHHHHHHHHH
Q ss_conf             717988---3288870011012321768878----------7414777899---86682--5775145678789999999
Q gi|254780757|r  116 HDVRFV---EDNWESPTLGAWGLGWECWCDG----------MEISQFTYFQ---QVCGI--ECSPISGEITYGLERLAMY  177 (307)
Q Consensus       116 hDIrFv---eDnWEsPtLGAwGlGWEvwldG----------MEItQFTYFQ---QvGGi--~c~pv~~EiTYGLERiaMy  177 (307)
                       .|-+.   |.=|+..--|.-|=-=|+--|+          +||--.-+.|   .-.|.  ++.--.+.--+|||||||.
T Consensus       150 -rI~~~~~~dNfW~~g~~GpcGPcsEi~yd~g~~~~~~~r~lEIwNlVFmqy~~~~~G~~~~L~~k~IDTGmGLERi~~v  228 (236)
T d1riqa2         150 -RIWRLGEEDNFWQMGDVGPCGPSSEIYVDRGEEYEGDERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASV  228 (236)
T ss_dssp             -GEEEECHHHHEEESSSSEEEEEEEEEEEECCTTSCHHHHEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEHHHHHHH
T ss_pred             -CCEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEEEEEHEEEEECCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf             -4153377777240689777776534787133333789765663110010001068986543889716589669999999


Q ss_pred             HCCCCCEE
Q ss_conf             86998211
Q gi|254780757|r  178 VQNVNSVY  185 (307)
Q Consensus       178 lQ~vdnvy  185 (307)
                      +|++.|+|
T Consensus       229 lqg~~s~y  236 (236)
T d1riqa2         229 LQGKNSNF  236 (236)
T ss_dssp             HTTCSSGG
T ss_pred             HCCCCCCC
T ss_conf             85999899


No 3  
>d1qq5a_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Xanthobacter autotrophicus [TaxId: 280]}
Probab=88.90  E-value=0.16  Score=28.90  Aligned_cols=44  Identities=30%  Similarity=0.456  Sum_probs=38.4

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEEC
Q ss_conf             79833589999999998199962171798832888700110123217-6887
Q gi|254780757|r   92 KPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWCD  142 (307)
Q Consensus        92 KPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vwld  142 (307)
                      ||.|+    .|..-++.+|++|.  ++-||+|+ .+-..||...|+. ||.+
T Consensus       147 KP~p~----~f~~a~~~lg~~p~--e~l~VgD~-~~di~~A~~aG~~tv~v~  191 (245)
T d1qq5a_         147 KPHPD----SYALVEEVLGVTPA--EVLFVSSN-GFDVGGAKNFGFSVARVA  191 (245)
T ss_dssp             TTSHH----HHHHHHHHHCCCGG--GEEEEESC-HHHHHHHHHHTCEEEEEC
T ss_pred             CCCHH----HHHHHHHHHCCCHH--HEEEEECC-HHHHHHHHHCCCEEEEEC
T ss_conf             86389----99999999197843--38999389-999999998699299984


No 4  
>d2gfha1 c.108.1.6 (A:1-247) N-acylneuraminate-9-phosphatase NANP {Mouse (Mus musculus) [TaxId: 10090]}
Probab=84.75  E-value=0.59  Score=24.83  Aligned_cols=47  Identities=26%  Similarity=0.532  Sum_probs=38.8

Q ss_pred             ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE--EEECC
Q ss_conf             579833589999999998199962171798832888700110123217--68878
Q gi|254780757|r   91 IKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE--CWCDG  143 (307)
Q Consensus        91 lKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE--vwldG  143 (307)
                      -||+|+    +|..-++.+|++|.  ++-||.|++++-..+|--.|+.  +|.++
T Consensus       163 ~KP~p~----~~~~~~~~~~~~~~--~~l~iGD~~~~Di~~A~~~G~~~~~~~~~  211 (247)
T d2gfha1         163 EKPAPS----IFYHCCDLLGVQPG--DCVMVGDTLETDIQGGLNAGLKATVWINK  211 (247)
T ss_dssp             CTTCHH----HHHHHHHHHTCCGG--GEEEEESCTTTHHHHHHHTTCSEEEEECT
T ss_pred             CHHHHH----HHHHHHHHHHCCHH--HCCEECCCHHHHHHHHHHCCCEEEEEECC
T ss_conf             003332----47889999602877--52420357186799999839949999779


No 5  
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]}
Probab=84.03  E-value=0.34  Score=26.50  Aligned_cols=61  Identities=16%  Similarity=0.139  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHHHCCCEEEECCCC-----CCCCCCCCH-------------HHHHHHCCCCCCEEEEECCCCCCCCCC
Q ss_conf             9999999999998669589611675-----433322485-------------789874483440167641557887655
Q gi|254780757|r   13 FQNIILTLTQYWAQQGCTILQPYDM-----EVGAGTFHP-------------STTLRALGPLSWKAAYVQPSRRPLDGR   73 (307)
Q Consensus        13 fq~ii~~L~~fW~~~GC~i~qpyd~-----e~GAgT~hp-------------~T~lr~lg~~pw~~aYvqPsrRP~DgR   73 (307)
                      -..|+..+-+|+.++|.+=+++=-+     |-++-.|++             ....|.+-.--=++-.+-||.|--+++
T Consensus        18 Rs~i~~~iR~ff~~~gf~Ev~TP~l~~~~~e~~~~~f~~~~~~~~~~L~~Spel~k~ll~~g~~~if~i~~~FR~ee~~   96 (304)
T d1n9wa2          18 QAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGLFGVDYFEKRAYLAQSPQLYKQIMVGVFERVYEVAPVWRMEEHH   96 (304)
T ss_dssp             HHHHHHHHHHHHHHTTCEECCCC----------------------------CHHHHHHHHHHHSEEEEEEEC-------
T ss_pred             HHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCEECCCCCCCCHHCCCCHHHHHHHHHCCCCCCEEEHHHCCCCCCC
T ss_conf             9999999999998889999879864788889978507876555301014538888887521335421014331245355


No 6  
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=83.86  E-value=0.43  Score=25.84  Aligned_cols=59  Identities=15%  Similarity=0.195  Sum_probs=40.4

Q ss_pred             HHCCCCEEEEECCEEEH-----------HHHHHHHHCCCCC--------------CCCHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf             10123217688787414-----------7778998668257--------------7514567878999999986998211
Q gi|254780757|r  131 GAWGLGWECWCDGMEIS-----------QFTYFQQVCGIEC--------------SPISGEITYGLERLAMYVQNVNSVY  185 (307)
Q Consensus       131 GAwGlGWEvwldGMEIt-----------QFTYFQQvGGi~c--------------~pv~~EiTYGLERiaMylQ~vdnvy  185 (307)
                      ..+...+|+-++|+||.           |-.-|..-|.-+-              -|.++-+.-|+|||.|++-|.+||-
T Consensus       260 ~~~a~rfeL~~~G~El~nG~~e~~d~~~~~~r~~~~~~~~~~~~~~~yl~al~~G~PP~~G~glGiDRL~m~l~~~~~Ir  339 (353)
T d1eova2         260 PKYSNSYDFFMRGEEILSGAQRIHDHALLQERMKAHGLSPEDPGLKDYCDGFSYGCPPHAGGGIGLERVVMFYLDLKNIR  339 (353)
T ss_dssp             TTBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHTTCCTTSTTTHHHHHHHTTCCCCEEEEEEEHHHHHHHHTTCSSGG
T ss_pred             HHHHHCEEEEEECEEECCEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHCCCCHH
T ss_conf             34343105555220871101145999999999998598845667999999967699997046558999999980899288


Q ss_pred             EEEE
Q ss_conf             3320
Q gi|254780757|r  186 DIVF  189 (307)
Q Consensus       186 Dl~w  189 (307)
                      |.+-
T Consensus       340 dvi~  343 (353)
T d1eova2         340 RASL  343 (353)
T ss_dssp             GGCS
T ss_pred             HEEC
T ss_conf             4467


No 7  
>d1wvia_ c.108.1.14 (A:) Putative phosphatase SMU.1415c {Streptococcus mutans [TaxId: 1309]}
Probab=83.05  E-value=0.88  Score=23.55  Aligned_cols=44  Identities=18%  Similarity=0.273  Sum_probs=37.1

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEE
Q ss_conf             79833589999999998199962171798832888700110123217-688
Q gi|254780757|r   92 KPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWC  141 (307)
Q Consensus        92 KPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vwl  141 (307)
                      ||+|.-    |..-++.+|++|  ..+-+|-|+.++--.||--.|+- ||.
T Consensus       180 KP~p~~----~~~al~~l~i~~--~~~~mIGDs~~~DI~gA~~aG~~si~V  224 (253)
T d1wvia_         180 KPEAVI----MNKALDRLGVKR--HEAIMVGDNYLTDITAGIKNDIATLLV  224 (253)
T ss_dssp             TTSHHH----HHHHHHHHTSCG--GGEEEEESCTTTTHHHHHHTTCEEEEE
T ss_pred             CCCCCC----CEEHHHHCCCCC--CCEEEECCCHHHHHHHHHHCCCCEEEE
T ss_conf             677420----011001103454--516998278077799999879979998


No 8  
>d2g80a1 c.108.1.22 (A:17-241) Protein UTR4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=77.08  E-value=1.2  Score=22.59  Aligned_cols=44  Identities=25%  Similarity=0.353  Sum_probs=37.8

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEEC
Q ss_conf             79833589999999998199962171798832888700110123217-6887
Q gi|254780757|r   92 KPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWCD  142 (307)
Q Consensus        92 KPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vwld  142 (307)
                      ||+|+    .|...++.+|++|  +++-||+|. .+--.||.-.|+. ||++
T Consensus       159 KP~p~----~f~~~~~~lg~~p--~e~l~VgD~-~~Dv~~A~~aG~~ti~v~  203 (225)
T d2g80a1         159 KTETQ----SYANILRDIGAKA--SEVLFLSDN-PLELDAAAGVGIATGLAS  203 (225)
T ss_dssp             TTCHH----HHHHHHHHHTCCG--GGEEEEESC-HHHHHHHHTTTCEEEEEC
T ss_pred             CCCHH----HHHHHHHHCCCCC--HHCEEECCC-HHHHHHHHHCCCEEEEEE
T ss_conf             98816----7677887436681--243464477-888999998599899996


No 9  
>d1x42a1 c.108.1.1 (A:1-230) Hypothetical protein PH0459 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=76.73  E-value=2.1  Score=20.81  Aligned_cols=47  Identities=28%  Similarity=0.422  Sum_probs=39.2

Q ss_pred             EECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEEE-EEC
Q ss_conf             75798335899999999981999621717988328887001101232176-887
Q gi|254780757|r   90 IIKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWEC-WCD  142 (307)
Q Consensus        90 ilKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWEv-wld  142 (307)
                      .-||+|    ++|..-++.+|++|.  ++-||+|+=++-..||--.||.. |.+
T Consensus       153 ~~KP~~----~~~~~~~~~l~~~p~--~~l~vgD~~~~Di~~A~~~G~~~v~v~  200 (230)
T d1x42a1         153 FFKPHP----RIFELALKKAGVKGE--EAVYVGDNPVKDCGGSKNLGMTSILLD  200 (230)
T ss_dssp             BCTTSH----HHHHHHHHHHTCCGG--GEEEEESCTTTTHHHHHTTTCEEEEEC
T ss_pred             CCCHHH----HHHHHHHHHHCCCCC--CCCEEECCCHHHHHHHHHCCCEEEEEC
T ss_conf             322135----778877764066431--264562174867999998599899988


No 10 
>d2c4na1 c.108.1.14 (A:1-250) NagD {Escherichia coli [TaxId: 562]}
Probab=74.94  E-value=2.6  Score=20.18  Aligned_cols=49  Identities=20%  Similarity=0.257  Sum_probs=37.9

Q ss_pred             EEEEECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEEEEE
Q ss_conf             4557579833589999999998199962171798832888700110123217688
Q gi|254780757|r   87 FQVIIKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWECWC  141 (307)
Q Consensus        87 fQVilKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWEvwl  141 (307)
                      ..+.-||+|.    .+..-++.+||+|.  ++-||-|+.++--+||.-.||--.+
T Consensus       171 ~~~~~KP~p~----~~~~a~~~lgi~p~--e~v~IGD~~~~DI~~a~~aG~~til  219 (250)
T d2c4na1         171 PFYVGKPSPW----IIRAALNKMQAHSE--ETVIVGDNLRTDILAGFQAGLETIL  219 (250)
T ss_dssp             CEECSTTSTH----HHHHHHHHHTCCGG--GEEEEESCTTTHHHHHHHTTCEEEE
T ss_pred             CHHCCCCHHH----HHHHHHHHHCCCCH--HEEEECCCHHHHHHHHHHCCCCEEE
T ss_conf             0001342046----67666666327803--4578468727799999987998999


No 11 
>d1yv9a1 c.108.1.14 (A:4-256) Putative hydrolase EF1188 {Enterococcus faecalis [TaxId: 1351]}
Probab=74.68  E-value=1.9  Score=21.10  Aligned_cols=46  Identities=22%  Similarity=0.341  Sum_probs=36.9

Q ss_pred             EECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEEEEE
Q ss_conf             7579833589999999998199962171798832888700110123217688
Q gi|254780757|r   90 IIKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWECWC  141 (307)
Q Consensus        90 ilKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWEvwl  141 (307)
                      .-||+|.-+    ..-++.+||+|.  ++-+|.|++++--.||--.|+-..+
T Consensus       178 ~~KP~~~~~----~~~~~~~gi~~~--~~l~IGD~~~~DI~~a~~aG~~si~  223 (253)
T d1yv9a1         178 IGKPKAIIM----ERAIAHLGVEKE--QVIMVGDNYETDIQSGIQNGIDSLL  223 (253)
T ss_dssp             CSTTSHHHH----HHHHHHHCSCGG--GEEEEESCTTTHHHHHHHHTCEEEE
T ss_pred             ECCCCHHHH----HHHHHHHCCCCC--CEEEECCCHHHHHHHHHHCCCCEEE
T ss_conf             134312678----789998488844--2378437827799999987998999


No 12 
>d2b0ca1 c.108.1.2 (A:8-204) Putative phosphatase YihX {Escherichia coli [TaxId: 562]}
Probab=74.05  E-value=2.8  Score=19.88  Aligned_cols=89  Identities=20%  Similarity=0.275  Sum_probs=56.8

Q ss_pred             HHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEE------ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf             8987448344016764155788765546677500114444557------5798335899999999981999621717988
Q gi|254780757|r   48 TTLRALGPLSWKAAYVQPSRRPLDGRYAENPNRLQHYYQFQVI------IKPNPLNLQNLYIESLKAVGIDPLIHDVRFV  121 (307)
Q Consensus        48 T~lr~lg~~pw~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQVi------lKPsp~niq~lYl~SL~~iGid~~~hDIrFv  121 (307)
                      .++..+-.+....+-+-.+-+...-+.-+.-+-+.+|+-+-+.      -||.|+    .|..-++.+|++|  +++-||
T Consensus        91 ~l~~~l~~~~~~~~i~t~~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~Kp~~~----~~~~~~~~~~~~~--~~~l~v  164 (197)
T d2b0ca1          91 AIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEIRDAADHIYLSQDLGMRKPEAR----IYQHVLQAEGFSP--SDTVFF  164 (197)
T ss_dssp             HHHHHHHHTTCEEEEEECCCCCTTSCCGGGCHHHHHHCSEEEEHHHHTCCTTCHH----HHHHHHHHHTCCG--GGEEEE
T ss_pred             HHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCCCHHHCCCEEECCCCCCCCCCHH----HHHHHHHHCCCCC--CEEEEE
T ss_conf             8999998669828998074189999999874140221460011134554434648----9999998519998--818999


Q ss_pred             ECCCCCCHHHHCCCCEE-EEECC
Q ss_conf             32888700110123217-68878
Q gi|254780757|r  122 EDNWESPTLGAWGLGWE-CWCDG  143 (307)
Q Consensus       122 eDnWEsPtLGAwGlGWE-vwldG  143 (307)
                      +|+- +--.+|--+||. ||.+.
T Consensus       165 gDs~-~di~~A~~aG~~ti~v~~  186 (197)
T d2b0ca1         165 DDNA-DNIEGANQLGITSILVKD  186 (197)
T ss_dssp             ESCH-HHHHHHHTTTCEEEECCS
T ss_pred             ECCH-HHHHHHHHCCCEEEEECC
T ss_conf             6798-999999986998999999


No 13 
>d2fdra1 c.108.1.6 (A:3-224) Hypothetical protein Atu0790 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=72.08  E-value=1.7  Score=21.49  Aligned_cols=45  Identities=27%  Similarity=0.505  Sum_probs=36.5

Q ss_pred             ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEEE-EEC
Q ss_conf             5798335899999999981999621717988328887001101232176-887
Q gi|254780757|r   91 IKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWEC-WCD  142 (307)
Q Consensus        91 lKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWEv-wld  142 (307)
                      -||+|    +.|+..++.+|++|  .++-||+|+ ..--.+|-.+|+.+ |..
T Consensus       140 ~KP~~----~~~~~~~~~l~~~p--~~~l~vgDs-~~dv~aA~~aG~~~i~v~  185 (222)
T d2fdra1         140 VKPKP----DIFLHGAAQFGVSP--DRVVVVEDS-VHGIHGARAAGMRVIGFT  185 (222)
T ss_dssp             CTTSS----HHHHHHHHHHTCCG--GGEEEEESS-HHHHHHHHHTTCEEEEEC
T ss_pred             CCCCH----HHHHHHHHHHCCCC--CEEEEECCC-HHHHHHHHHCCCEEEEEC
T ss_conf             44588----99987787508987--328997587-878999998499899983


No 14 
>d1zrna_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Pseudomonas sp., strain YL [TaxId: 306]}
Probab=71.46  E-value=1.5  Score=21.96  Aligned_cols=87  Identities=23%  Similarity=0.374  Sum_probs=51.3

Q ss_pred             HHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEE------EECCCCHHHHHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf             898744834401676415578876554667750011444455------75798335899999999981999621717988
Q gi|254780757|r   48 TTLRALGPLSWKAAYVQPSRRPLDGRYAENPNRLQHYYQFQV------IIKPNPLNLQNLYIESLKAVGIDPLIHDVRFV  121 (307)
Q Consensus        48 T~lr~lg~~pw~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQV------ilKPsp~niq~lYl~SL~~iGid~~~hDIrFv  121 (307)
                      .+++.+.....+++-+--+-+..=-...++ ..+.+|+-+.+      .-||+|    +.|...++.+|++|.  ++-||
T Consensus       100 ~~l~~l~~~~~~~~i~tn~~~~~~~~~~~~-~~~~~~fd~~~~s~~~~~~KP~p----~~~~~~~~~~g~~p~--e~l~V  172 (220)
T d1zrna_         100 DSLRELKRRGLKLAILSNGSPQSIDAVVSH-AGLRDGFDHLLSVDPVQVYKPDN----RVYELAEQALGLDRS--AILFV  172 (220)
T ss_dssp             HHHHHHHHTTCEEEEEESSCHHHHHHHHHH-TTCGGGCSEEEESGGGTCCTTSH----HHHHHHHHHHTSCGG--GEEEE
T ss_pred             HHHHHHHHCCCEEEEECCHHHHHHHHHHHH-CCCCCCCCCEEEEEEEECCCCHH----HHHHHHHHHHCCCCC--EEEEE
T ss_conf             899988751785776421179999998741-14455321002221000145077----889999998177871--48998


Q ss_pred             ECCCCCCHHHHCCCCEE-EEEC
Q ss_conf             32888700110123217-6887
Q gi|254780757|r  122 EDNWESPTLGAWGLGWE-CWCD  142 (307)
Q Consensus       122 eDnWEsPtLGAwGlGWE-vwld  142 (307)
                      .|+. +--.||--.||. ||.+
T Consensus       173 gD~~-~Di~~A~~aG~~~v~v~  193 (220)
T d1zrna_         173 ASNA-WDATGARYFGFPTCWIN  193 (220)
T ss_dssp             ESCH-HHHHHHHHHTCCEEEEC
T ss_pred             ECCH-HHHHHHHHCCCEEEEEC
T ss_conf             0483-76999998699799981


No 15 
>d1zd3a1 c.108.1.2 (A:2-224) Epoxide hydrolase, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=70.20  E-value=1.7  Score=21.54  Aligned_cols=96  Identities=18%  Similarity=0.220  Sum_probs=57.6

Q ss_pred             CCCCCHH--HHHHHCCCCCCEEEEECCCCCCCCCCCCC-CCC--CCCEEEEEEEE------ECCCCHHHHHHHHHHHHHC
Q ss_conf             3224857--89874483440167641557887655466-775--00114444557------5798335899999999981
Q gi|254780757|r   41 AGTFHPS--TTLRALGPLSWKAAYVQPSRRPLDGRYAE-NPN--RLQHYYQFQVI------IKPNPLNLQNLYIESLKAV  109 (307)
Q Consensus        41 AgT~hp~--T~lr~lg~~pw~~aYvqPsrRP~DgRYGe-NPN--Rlq~y~QfQVi------lKPsp~niq~lYl~SL~~i  109 (307)
                      .....|.  -+|..|..+-++++-+--+-+....+.-. .+.  -+..|+.+-+.      -||+|+    +|..-++.+
T Consensus        97 ~~~~~~~~~~~l~~L~~~~~~~~i~Tn~~~~~~~~~~~~~~~~~~~~~~fd~i~~s~~~~~~KP~~~----~~~~~~~~~  172 (225)
T d1zd3a1          97 ARKINRPMLQAALMLRKKGFTTAILTNTWLDDRAERDGLAQLMCELKMHFDFLIESCQVGMVKPEPQ----IYKFLLDTL  172 (225)
T ss_dssp             HCEECHHHHHHHHHHHHTTCEEEEEECCCCCCSTTHHHHHHHHHHHHTTSSEEEEHHHHTCCTTCHH----HHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCEEEECCCCCCCHHHHH----HHHHHHHHC
T ss_conf             0778801999999998634863345434124089999987652573866638995122334304778----888776301


Q ss_pred             CCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEECC
Q ss_conf             99962171798832888700110123217-68878
Q gi|254780757|r  110 GIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWCDG  143 (307)
Q Consensus       110 Gid~~~hDIrFveDnWEsPtLGAwGlGWE-vwldG  143 (307)
                      |++|.  ++-||+|+ ++--.+|--+||. ||.+.
T Consensus       173 ~~~p~--e~l~VgD~-~~Di~~A~~~G~~ti~v~~  204 (225)
T d1zd3a1         173 KASPS--EVVFLDDI-GANLKPARDLGMVTILVQD  204 (225)
T ss_dssp             TCCGG--GEEEEESC-HHHHHHHHHTTCEEEECSS
T ss_pred             CCCCC--CEEEEECC-HHHHHHHHHCCCEEEEECC
T ss_conf             56865--10588168-8879999986998999898


No 16 
>d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=70.10  E-value=3.1  Score=19.62  Aligned_cols=111  Identities=17%  Similarity=0.215  Sum_probs=68.8

Q ss_pred             CCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEE-----EEECCCCHHHHHH-------HHHHHHHCCCCCCCCCEEEEE
Q ss_conf             3440167641557887655466775001144445-----5757983358999-------999999819996217179883
Q gi|254780757|r   55 PLSWKAAYVQPSRRPLDGRYAENPNRLQHYYQFQ-----VIIKPNPLNLQNL-------YIESLKAVGIDPLIHDVRFVE  122 (307)
Q Consensus        55 ~~pw~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQ-----VilKPsp~niq~l-------Yl~SL~~iGid~~~hDIrFve  122 (307)
                      .-|-+.+=+-||.|-..|.||....-|.+-+||.     ++..++|++.-+.       .-+=++.|||.     .|.| 
T Consensus       133 ~LPlr~~~~s~cfR~Eag~~g~~trGL~RvhQF~kvE~~~~~~~~~e~s~~~~~~~~~~~~~~~~~L~lp-----yrvv-  206 (311)
T d1seta2         133 ALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELP-----YRLV-  206 (311)
T ss_dssp             GCSEEEEEEEEEECCCCSCTTSSCSTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCC-----EEEE-
T ss_pred             HCCCEEEEECCCCHHHHCCCCCCCHHHHHHCCCCHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHCCC-----CHHC-
T ss_conf             0450577633531132113454312000100332312201202443110238999999999987761786-----0010-


Q ss_pred             CCCCCCHHHHCC---CCEEEEECC----EEE---HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf             288870011012---321768878----741---4777899866825775145678789999999869982113320
Q gi|254780757|r  123 DNWESPTLGAWG---LGWECWCDG----MEI---SQFTYFQQVCGIECSPISGEITYGLERLAMYVQNVNSVYDIVF  189 (307)
Q Consensus       123 DnWEsPtLGAwG---lGWEvwldG----MEI---tQFTYFQQvGGi~c~pv~~EiTYGLERiaMylQ~vdnvyDl~w  189 (307)
                       +..+--||++.   .--|+|..|    .||   +++|=||                 -.|+-+-.++.|+-....|
T Consensus       207 -~~~~~dl~~~a~~~~diE~w~P~~~~y~Ev~S~sn~~d~q-----------------srRl~i~y~~~dg~~~~~h  265 (311)
T d1seta2         207 -EVATGDMGPGKWRQVDIEVYLPSEGRYRETHSCSALLDWQ-----------------ARRANLRYRDPEGRVRYAY  265 (311)
T ss_dssp             -ECCTTTSCTTCSEEEEEEEEEGGGTEEEEEEEEEECTTHH-----------------HHHHTCEEECTTSCEEECE
T ss_pred             -CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEECCHHH-----------------HHHCCCEEECCCCCEEEEE
T ss_conf             -3367787467776667888675069751346714004477-----------------7652658978999888679


No 17 
>d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]}
Probab=67.60  E-value=0.7  Score=24.25  Aligned_cols=129  Identities=20%  Similarity=0.213  Sum_probs=66.4

Q ss_pred             CCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEECC---CCHHHHHHHHHHHHHCCCCCCCCCEEEEECCC--CC
Q ss_conf             48344016764155788765546677500114444557579---83358999999999819996217179883288--87
Q gi|254780757|r   53 LGPLSWKAAYVQPSRRPLDGRYAENPNRLQHYYQFQVIIKP---NPLNLQNLYIESLKAVGIDPLIHDVRFVEDNW--ES  127 (307)
Q Consensus        53 lg~~pw~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQVilKP---sp~niq~lYl~SL~~iGid~~~hDIrFveDnW--Es  127 (307)
                      -+..|+++.++--+.|..+    ...-.+-.+||.-.++--   +-.+....--.-++.++-  .+..+||..+--  -.
T Consensus       105 ~~~~p~~~~~~g~VyRrd~----iD~tH~p~FhQ~eg~~vd~~~~~~~Lk~~l~~~~~~~f~--~~~~~R~~p~yFPFTe  178 (266)
T d1jjca_         105 AHTPPFRIVVPGRVFRFEQ----TDATHEAVFHQLEGLVVGEGIAMAHLKGAIYELAQALFG--PDSKVRFQPVYFPFVE  178 (266)
T ss_dssp             HSCSSEEEEEEEEEECCSC----CCSSCCSEEEEEEEEEEETTCCHHHHHHHHHHHHHHHHC--TTCCEEEEECCCTTEE
T ss_pred             CCCCCCEEEECCCCEECCC----CCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCC--CCCEEEEECCCCCCCC
T ss_conf             1499814884032140478----887526653021016524101078899999999998528--8837998425588756


Q ss_pred             CH--HHH-C--CCCE-EEEECCEEEHHHHHHHHHC------CCCCCC---CHHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf             00--110-1--2321-7688787414777899866------825775---1456787899999998699821133206
Q gi|254780757|r  128 PT--LGA-W--GLGW-ECWCDGMEISQFTYFQQVC------GIECSP---ISGEITYGLERLAMYVQNVNSVYDIVFN  190 (307)
Q Consensus       128 Pt--LGA-w--GlGW-EvwldGMEItQFTYFQQvG------Gi~c~p---v~~EiTYGLERiaMylQ~vdnvyDl~wn  190 (307)
                      |+  +-+ |  |.+| ||-=-||=  .=..++.+|      |++-.-   ..--.--|||||||-+-++++|-++ |+
T Consensus       179 PS~Ev~v~~~~~~~WlEilG~Gmv--~p~vL~~~gi~~~~~g~~~~~~~~~g~AfGlGlERlAMl~~gI~DIR~f-~~  253 (266)
T d1jjca_         179 PGAQFAVWWPEGGKWLELGGAGMV--HPKVFQAVDAYRERLGLPPAYRGVTGFAFGLGVERLAMLRYGIPDIRYF-FG  253 (266)
T ss_dssp             EEEEEEEEEGGGTEEEEEEEEEEE--CHHHHHHHHHHHHTTTCCCCCTTCEEEEEEEEHHHHHHHHHTCSCGGGT-TT
T ss_pred             CCCCEEEEEEECCCCCEEEEECCC--CHHHHHHCCCCHHHCCCCCCCCCCEEEEEEECHHHHHHHHCCCCHHHHH-HC
T ss_conf             876668898605776668740456--8899986388656516885456776999863399999998299858877-51


No 18 
>d1zcza2 c.97.1.4 (A:158-452) AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC {Thermotoga maritima [TaxId: 2336]}
Probab=67.58  E-value=2.1  Score=20.76  Aligned_cols=32  Identities=25%  Similarity=0.392  Sum_probs=18.1

Q ss_pred             CCCCCCCCCCCCEEE---EEEEEE---CCCCHHHHHHH
Q ss_conf             655466775001144---445575---79833589999
Q gi|254780757|r   71 DGRYAENPNRLQHYY---QFQVII---KPNPLNLQNLY  102 (307)
Q Consensus        71 DgRYGeNPNRlq~y~---QfQVil---KPsp~niq~lY  102 (307)
                      +=||||||.---..|   .|.+++   .||-.|+.|+.
T Consensus        11 ~LRYGENPHQ~A~~y~~~~~~~~~~GK~lSynN~lD~~   48 (295)
T d1zcza2          11 QLRYGENPHEKAFVYGKPAFEILHEGKTISFNNILDAE   48 (295)
T ss_dssp             CCSCSSSTTSCEEEESCCSEEEECSSSCCCHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCHHHHH
T ss_conf             87899896864442588716886269986721099999


No 19 
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=65.79  E-value=0.4  Score=26.02  Aligned_cols=171  Identities=15%  Similarity=0.065  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHHHCCCEEEE-----CCC---CCCCCCCC-----------------CHHHHHH-HCCCCCCEEEEECCCC
Q ss_conf             99999999999866958961-----167---54333224-----------------8578987-4483440167641557
Q gi|254780757|r   14 QNIILTLTQYWAQQGCTILQ-----PYD---MEVGAGTF-----------------HPSTTLR-ALGPLSWKAAYVQPSR   67 (307)
Q Consensus        14 q~ii~~L~~fW~~~GC~i~q-----pyd---~e~GAgT~-----------------hp~T~lr-~lg~~pw~~aYvqPsr   67 (307)
                      ..||..+-+|+.++|-+-+.     |-.   ...|+++.                 .|.-.+. +|..--=++-.+-||.
T Consensus        18 s~i~~~iR~ff~~~gf~EV~tPil~~~~~~~~~~~~~~~~~~~~~~~~~~~~yL~~SPel~lk~lla~g~~~Vf~I~~~F   97 (293)
T d1nnha_          18 TKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEGMEPAEVEIYGVKMRLTHSMILHKQLAIAMGLKKIFVLSPNI   97 (293)
T ss_dssp             HHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTCCCCCCCEEEETTEEEEECSCSHHHHHHHHHTTCCEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHCCCCCEEECHHH
T ss_conf             99999999999988999975873456677777765567664653567896564466863647999972233210310233


Q ss_pred             C--CCCCCCC-CCCCCCCEEEEEEEEEC-CCCHHHH------------------------------HHHHHHHHHCCCCC
Q ss_conf             8--8765546-67750011444455757-9833589------------------------------99999999819996
Q gi|254780757|r   68 R--PLDGRYA-ENPNRLQHYYQFQVIIK-PNPLNLQ------------------------------NLYIESLKAVGIDP  113 (307)
Q Consensus        68 R--P~DgRYG-eNPNRlq~y~QfQVilK-Psp~niq------------------------------~lYl~SL~~iGid~  113 (307)
                      |  +.+++=+ .||-    +.+.-.=+. -.-+++-                              --|.+.|+..|+|.
T Consensus        98 R~E~~~s~t~RH~~E----FtmLE~e~~~~d~~d~m~~~e~li~~~~~~~~~~~~~~~~~~~~~~~~~~~eal~~~g~d~  173 (293)
T d1nnha_          98 RLESRQKDDGRHAYE----FTQLDFEVERAKMEDIMRLIERLVYGLFRKAEEWTGREFPKTKRFEVFEYSEVLEEFGSDE  173 (293)
T ss_dssp             CCCCGGGCSSSCCSE----EEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCSSCEEEEHHHHHHHTSSHH
T ss_pred             HCCCCCCCCCCCCHH----HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCC
T ss_conf             047556777756156----6511112332307889999999999999999987174566678433233876532367652


Q ss_pred             C---CCCEEEEECCCCCCH------HHHCCCCEEEEECCEEEH-----------HHHHHHHHCCCCC-------------
Q ss_conf             2---171798832888700------110123217688787414-----------7778998668257-------------
Q gi|254780757|r  114 L---IHDVRFVEDNWESPT------LGAWGLGWECWCDGMEIS-----------QFTYFQQVCGIEC-------------  160 (307)
Q Consensus       114 ~---~hDIrFveDnWEsPt------LGAwGlGWEvwldGMEIt-----------QFTYFQQvGGi~c-------------  160 (307)
                      .   +.+.-+.--||..+-      -..+....++..+|+||.           |--=|.+.|. +-             
T Consensus       174 ~~~~~~~~p~~~~~~p~~f~~~~~~~~~~~~~~~l~~~g~Elang~~el~d~~~~~~r~~~~gl-~~e~~~~yl~a~~~G  252 (293)
T d1nnha_         174 KASQEMEEPFWIINIPREFYDREVDGFWRNYDLILPYGYGEVASGGEREWEYEKIVAKIRKAGL-NEDSFRPYLEIAKAG  252 (293)
T ss_dssp             HHHHHCSSCEEEECCCCCTTBCEETTEECEEEEEETTTTEEEEEEEEBCCCHHHHHHHHHHTTC-CGGGGHHHHHHHHTT
T ss_pred             CCCCCCCCCEECCCCCHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHC
T ss_conf             0011222113203421021024666434541357404574205521010679999999998599-989999999999809


Q ss_pred             -CCCHHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf             -75145678789999999869982113320
Q gi|254780757|r  161 -SPISGEITYGLERLAMYVQNVNSVYDIVF  189 (307)
Q Consensus       161 -~pv~~EiTYGLERiaMylQ~vdnvyDl~w  189 (307)
                       -|.++-+.-|+|||.|++.|++||-|..-
T Consensus       253 ~mPP~~G~glGiDRL~m~l~g~~~Irdv~~  282 (293)
T d1nnha_         253 KLKPSAGAGIGVERLVRFIVGAKHIAEVQP  282 (293)
T ss_dssp             CCCCEEEEEEEHHHHHHHHHTCSSGGGGCS
T ss_pred             CCCCCCEEEEHHHHHHHHHHCCCCHHHEEC
T ss_conf             999988676659999999938982885114


No 20 
>d2go7a1 c.108.1.6 (A:3-206) Hypothetical protein SP2064 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=64.28  E-value=3.1  Score=19.62  Aligned_cols=44  Identities=16%  Similarity=0.151  Sum_probs=35.9

Q ss_pred             ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEEEEE
Q ss_conf             579833589999999998199962171798832888700110123217688
Q gi|254780757|r   91 IKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWECWC  141 (307)
Q Consensus        91 lKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWEvwl  141 (307)
                      .||.|    ++|..-++.+|++|  +++-||+|+ .+--.+|-.+|+..++
T Consensus       136 ~Kp~~----~~~~~~~~~~~~~p--~~~l~VgD~-~~Di~~A~~~G~~~i~  179 (204)
T d2go7a1         136 RKPSP----EAATYLLDKYQLNS--DNTYYIGDR-TLDVEFAQNSGIQSIN  179 (204)
T ss_dssp             CTTSS----HHHHHHHHHHTCCG--GGEEEEESS-HHHHHHHHHHTCEEEE
T ss_pred             CCHHH----HHHHHHHHHHCCCC--CEEEEEECC-HHHHHHHHHCCCEEEE
T ss_conf             20257----88899999829997--518999479-8999999986996999


No 21 
>d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=59.62  E-value=1.7  Score=21.46  Aligned_cols=117  Identities=8%  Similarity=-0.005  Sum_probs=70.1

Q ss_pred             HCCCCCCEEEEECCCCCCCCCCCCCCC----CCCCEEEEEEEEECCCCHHHHHH-------HHHHHHHCCCCCCCCCEEE
Q ss_conf             448344016764155788765546677----50011444455757983358999-------9999998199962171798
Q gi|254780757|r   52 ALGPLSWKAAYVQPSRRPLDGRYAENP----NRLQHYYQFQVIIKPNPLNLQNL-------YIESLKAVGIDPLIHDVRF  120 (307)
Q Consensus        52 ~lg~~pw~~aYvqPsrRP~DgRYGeNP----NRlq~y~QfQVilKPsp~niq~l-------Yl~SL~~iGid~~~hDIrF  120 (307)
                      +-..=|.++|=+-+|.|+..+  |..|    -|+....|.-..+==.|+++.+.       -..=++.+||++.  .+|+
T Consensus       134 ~~~~LPf~iaq~g~~fR~E~~--~~~~~~gl~RvReF~q~E~~~F~~pe~~~~~~~~~~~~~~~~~~~lGi~~~--~~~~  209 (290)
T d1g5ha2         134 VNRKLPFGLAQIGVCFHPVSN--SNQTPSSVTRVGEKTEASLVWFTPTRTSSQWLDFWLRHRLLWWRKFAMSPS--NFSS  209 (290)
T ss_dssp             TTTBSCEEEEEEEEEEEEEC-----------CEEEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTCSSGG--GEEE
T ss_pred             CCCCCCCEEEEECCCCCCCCC--CCCCCCCCCEEEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCHH--HEEE
T ss_conf             247899379986443345555--677641330324768413578967750678999999999999997398866--6652


Q ss_pred             EECCCCCCHHHHCCCCEEEEEC--C-----EEEHH--------------HHHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             8328887001101232176887--8-----74147--------------77899866825775145678789999999
Q gi|254780757|r  121 VEDNWESPTLGAWGLGWECWCD--G-----MEISQ--------------FTYFQQVCGIECSPISGEITYGLERLAMY  177 (307)
Q Consensus       121 veDnWEsPtLGAwGlGWEvwld--G-----MEItQ--------------FTYFQQvGGi~c~pv~~EiTYGLERiaMy  177 (307)
                      .+..++..   ..  .|++|..  .     --+++              .+|+-+-|+-.--|+.+|.+.|+||+.+.
T Consensus       210 ~~~~~~~a---~~--~~die~~~p~g~~Ei~g~~~r~D~dl~~~~~~~~l~y~~~d~~~k~vP~vIe~s~gldR~~lA  282 (290)
T d1g5ha2         210 ADCQDELG---RK--GSKLYYSFPWGKEPIETLWNLGDQELLHTYPGNVSTIQGRDGRKNVVPCVLSVSGDVDLGTLA  282 (290)
T ss_dssp             EEEECTTS---CE--EEEEEEEETTEEEEEEEEEEEESHHHHHHSTTCGGGSCEEETTEEECCEEEEEEEEHHHHHHH
T ss_pred             CCCCHHHC---CC--CEEEEECCCCCEEEEEEECCCHHHHHHHCCCCCCCEEECCCCCEEEEEEEEECCCCHHHHHHH
T ss_conf             24514441---00--105687289877998876388135066461026987884689945765898576526789999


No 22 
>d1o08a_ c.108.1.6 (A:) beta-Phosphoglucomutase {Lactococcus lactis [TaxId: 1358]}
Probab=57.60  E-value=5.1  Score=18.05  Aligned_cols=45  Identities=24%  Similarity=0.350  Sum_probs=35.1

Q ss_pred             ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEEC
Q ss_conf             579833589999999998199962171798832888700110123217-6887
Q gi|254780757|r   91 IKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWCD  142 (307)
Q Consensus        91 lKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vwld  142 (307)
                      -||+|    +.|..-|+.+|++|  +++-||.|. .+--.+|--+|+. ||.+
T Consensus       144 ~KP~~----~~~~~~l~~~~i~~--~~~l~VgD~-~~di~~A~~aG~~~i~v~  189 (221)
T d1o08a_         144 SKPAP----DIFIAAAHAVGVAP--SESIGLEDS-QAGIQAIKDSGALPIGVG  189 (221)
T ss_dssp             CTTST----HHHHHHHHHTTCCG--GGEEEEESS-HHHHHHHHHHTCEEEEES
T ss_pred             CCCCH----HHHHHHHHHCCCCC--CEEEEEECC-HHHHHHHHHCCCEEEEEC
T ss_conf             23575----88888898739887--407999669-888999998699899999


No 23 
>d1te2a_ c.108.1.6 (A:) Phosphatase YniC {Escherichia coli [TaxId: 562]}
Probab=56.93  E-value=5.3  Score=17.89  Aligned_cols=44  Identities=20%  Similarity=0.393  Sum_probs=35.0

Q ss_pred             ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEEEEE
Q ss_conf             579833589999999998199962171798832888700110123217688
Q gi|254780757|r   91 IKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWECWC  141 (307)
Q Consensus        91 lKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWEvwl  141 (307)
                      -||.|+    .|...++.+|++|  .++-||+|+ ++-..+|-..|+.+..
T Consensus       143 ~Kp~~~----~~~~~~~~l~~~~--~~~l~igD~-~~di~aA~~~G~~~i~  186 (218)
T d1te2a_         143 SKPHPQ----VYLDCAAKLGVDP--LTCVALEDS-VNGMIASKAARMRSIV  186 (218)
T ss_dssp             CTTSTH----HHHHHHHHHTSCG--GGEEEEESS-HHHHHHHHHTTCEEEE
T ss_pred             CHHHHH----HHHHHHHHCCCCC--HHCEEEEEC-HHHHHHHHHCCCEEEE
T ss_conf             014578----9999999729995--130899609-8999999983997999


No 24 
>d1cr6a1 c.108.1.2 (A:4-225) Epoxide hydrolase, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=56.88  E-value=5.9  Score=17.59  Aligned_cols=88  Identities=20%  Similarity=0.234  Sum_probs=56.7

Q ss_pred             HHHHHCCCCCCEEEEECCCCCCCCCCCCC---CCCCCCEEEEEEEE------ECCCCHHHHHHHHHHHHHCCCCCCCCCE
Q ss_conf             89874483440167641557887655466---77500114444557------5798335899999999981999621717
Q gi|254780757|r   48 TTLRALGPLSWKAAYVQPSRRPLDGRYAE---NPNRLQHYYQFQVI------IKPNPLNLQNLYIESLKAVGIDPLIHDV  118 (307)
Q Consensus        48 T~lr~lg~~pw~~aYvqPsrRP~DgRYGe---NPNRlq~y~QfQVi------lKPsp~niq~lYl~SL~~iGid~~~hDI  118 (307)
                      .+|..|-....+++-+--+.++..-++..   .-.-+.+|+.+.+.      -||+|+    +|..-++.+|++|.  ++
T Consensus       104 ~~L~~L~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~l~~~fd~i~~s~~~~~~KP~p~----~~~~~~~~~~v~p~--~~  177 (222)
T d1cr6a1         104 QAAIALKKKGFTTCIVTNNWLDDGDKRDSLAQMMCELSQHFDFLIESCQVGMIKPEPQ----IYNFLLDTLKAKPN--EV  177 (222)
T ss_dssp             HHHHHHHHTTCEEEEEECCCCCCSSSHHHHHHHHHHHGGGCSEEEEHHHHSCCTTCHH----HHHHHHHHHTSCTT--SE
T ss_pred             HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCHHHHHCEEEEHHHCCCCCCCHH----HHHHHHHHHCCCCC--EE
T ss_conf             9999998659945775201111189999999874680755111000544137799827----77788887289863--28


Q ss_pred             EEEECCCCCCHHHHCCCCEE-EEEC
Q ss_conf             98832888700110123217-6887
Q gi|254780757|r  119 RFVEDNWESPTLGAWGLGWE-CWCD  142 (307)
Q Consensus       119 rFveDnWEsPtLGAwGlGWE-vwld  142 (307)
                      -||.|+ ++-..||-..||- ||.+
T Consensus       178 l~IgD~-~~Di~~A~~aG~~ti~V~  201 (222)
T d1cr6a1         178 VFLDDF-GSNLKPARDMGMVTILVH  201 (222)
T ss_dssp             EEEESS-STTTHHHHHHTCEEEECC
T ss_pred             EEEECC-HHHHHHHHHCCCEEEEEC
T ss_conf             999779-887999998599899989


No 25 
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]}
Probab=54.66  E-value=0.8  Score=23.83  Aligned_cols=60  Identities=12%  Similarity=0.008  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHHCCCEEEEC-----CCCCCCCCCC---------------CHHHHHHH-CCCCCCEEEEECCCCCCCCC
Q ss_conf             999999999998669589611-----6754333224---------------85789874-48344016764155788765
Q gi|254780757|r   14 QNIILTLTQYWAQQGCTILQP-----YDMEVGAGTF---------------HPSTTLRA-LGPLSWKAAYVQPSRRPLDG   72 (307)
Q Consensus        14 q~ii~~L~~fW~~~GC~i~qp-----yd~e~GAgT~---------------hp~T~lr~-lg~~pw~~aYvqPsrRP~Dg   72 (307)
                      ..|+..+-+|..++|.+=.++     .+.|-++..+               .|.-.++. +-.---++-.+-||.|....
T Consensus        36 s~i~~~iR~ff~~~gFlEV~TPiL~~~~~~g~~~~~~~~~~~~~~~~~L~~Spel~lk~ll~~g~~~Vf~i~~~FR~E~~  115 (346)
T d1c0aa3          36 AKITSLVRRFMDDHGFLDIETPMLTKATPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDL  115 (346)
T ss_dssp             HHHHHHHHHHHHHTTCEECCCCSSBCCCSSSSCCCEEECSSSTTCEEECCSCSHHHHHHHHHTTCCEEEEEEEEECCCCC
T ss_pred             HHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCC
T ss_conf             99999999999988989987985477787645444212113799630677187999999863488854897124021236


Q ss_pred             C
Q ss_conf             5
Q gi|254780757|r   73 R   73 (307)
Q Consensus        73 R   73 (307)
                      +
T Consensus       116 ~  116 (346)
T d1c0aa3         116 R  116 (346)
T ss_dssp             B
T ss_pred             C
T ss_conf             8


No 26 
>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]}
Probab=54.22  E-value=0.79  Score=23.90  Aligned_cols=74  Identities=11%  Similarity=0.108  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHHCCCEEEEC-----CCCCCCCCCC---------------CHHHHHH-HCCCCCCEEEEECCCCCCCCC
Q ss_conf             999999999998669589611-----6754333224---------------8578987-448344016764155788765
Q gi|254780757|r   14 QNIILTLTQYWAQQGCTILQP-----YDMEVGAGTF---------------HPSTTLR-ALGPLSWKAAYVQPSRRPLDG   72 (307)
Q Consensus        14 q~ii~~L~~fW~~~GC~i~qp-----yd~e~GAgT~---------------hp~T~lr-~lg~~pw~~aYvqPsrRP~Dg   72 (307)
                      ..|+..+.+|+.++|.+=+++     .+.+-+|..|               .|.-++. ++-.--=++-.+-||.|--+.
T Consensus        27 s~i~~~iR~ff~~~gFiEV~TPil~~~~~~~~~~~f~~~~~~~~~~~yL~~Spql~~k~~l~~g~~~vf~i~p~FR~E~~  106 (342)
T d1e1oa2          27 SKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHHNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGI  106 (342)
T ss_dssp             HHHHHHHHHHHHTTTCEECCCCSEESSCCSSCCCCCEEEETTTTEEEEECSCSHHHHHHHHHHTCCEEEEEEEEECCCCC
T ss_pred             HHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCC
T ss_conf             99999999999888899998987643279878864231466777512002326799898766224621342000245543


Q ss_pred             CCCCCCCCCCEEEEEEEEE
Q ss_conf             5466775001144445575
Q gi|254780757|r   73 RYAENPNRLQHYYQFQVII   91 (307)
Q Consensus        73 RYGeNPNRlq~y~QfQVil   91 (307)
                          .+-++--++|+-+=+
T Consensus       107 ----~~rHl~EFtmlE~e~  121 (342)
T d1e1oa2         107 ----SVRHNPEFTMMELYM  121 (342)
T ss_dssp             ----CC-CCSEEEEEEEEE
T ss_pred             ----CCCCHHHHHHHHHHH
T ss_conf             ----111107888788998


No 27 
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]}
Probab=53.82  E-value=0.84  Score=23.68  Aligned_cols=173  Identities=18%  Similarity=0.240  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHHCCCEEEEC-----CCCCCCCC---------------CCCHHHHHHHC-CCCCCEEEEECCCCCCCCC
Q ss_conf             999999999998669589611-----67543332---------------24857898744-8344016764155788765
Q gi|254780757|r   14 QNIILTLTQYWAQQGCTILQP-----YDMEVGAG---------------TFHPSTTLRAL-GPLSWKAAYVQPSRRPLDG   72 (307)
Q Consensus        14 q~ii~~L~~fW~~~GC~i~qp-----yd~e~GAg---------------T~hp~T~lr~l-g~~pw~~aYvqPsrRP~Dg   72 (307)
                      ..++..+.+|+.++|++=+++     .+.|-++.               +-.|.-.+..| -.--=++--+-||.|-...
T Consensus        44 s~i~~~iR~ff~~~gfiEV~TP~L~~~~~eg~~~~~~~~~~~~~~~~yL~~Spel~lk~ll~~g~~~Vf~i~~~FRaE~~  123 (356)
T d1l0wa3          44 HRVIKAIWDFLDREGFVQVETPFLTKSTPEGARDFLVPYRHEPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFRDEDL  123 (356)
T ss_dssp             HHHHHHHHHHHHHTTCEECCCCSSBCCCSSSSCCCEEECTTSTTEEEECCSCSHHHHHHHHHTTCSEEEEEEEEECCCCC
T ss_pred             HHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCC
T ss_conf             99999999999888989998981246777644320022211320111777285677777523236867998212352226


Q ss_pred             CCCCCCCCCCEEEEEEEEECC-CCHHH----HHH---------------------HHHHHHHCCCC---CCCCCEEEE--
Q ss_conf             546677500114444557579-83358----999---------------------99999981999---621717988--
Q gi|254780757|r   73 RYAENPNRLQHYYQFQVIIKP-NPLNL----QNL---------------------YIESLKAVGID---PLIHDVRFV--  121 (307)
Q Consensus        73 RYGeNPNRlq~y~QfQVilKP-sp~ni----q~l---------------------Yl~SL~~iGid---~~~hDIrFv--  121 (307)
                          +..++--+++.-.-..= +-+++    .+|                     |-+....++.+   ....+++|.  
T Consensus       124 ----~t~H~~EFtmLE~e~~~~~~~~~m~~~E~li~~v~~~~~~~~~~~~f~r~~~~~a~~~~~~~~~~l~~~~~~~~~~  199 (356)
T d1l0wa3         124 ----RADRQPDFTQLDLEMSFVEVEDVLELNERLMAHVFREALGVELPLPFPRLSYEEAMERYGSDKPDLRREGFRFLWV  199 (356)
T ss_dssp             ----CSSCCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHTCCCCCSSCCEEEHHHHHHHHSSSSCCCSCCSCCEEEE
T ss_pred             ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHC
T ss_conf             ----8754045668877666788878999999999999999728777789775117766778704747677775665420


Q ss_pred             EC------CCCCCHH-----------------------HHCCCCEEEEECCEEEH-----------HHHHHHHHCCCC--
Q ss_conf             32------8887001-----------------------10123217688787414-----------777899866825--
Q gi|254780757|r  122 ED------NWESPTL-----------------------GAWGLGWECWCDGMEIS-----------QFTYFQQVCGIE--  159 (307)
Q Consensus       122 eD------nWEsPtL-----------------------GAwGlGWEvwldGMEIt-----------QFTYFQQvGGi~--  159 (307)
                      .|      +.+.+.+                       ......+|+-++|+||.           |-.-|+..|--+  
T Consensus       200 ~d~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~a~~FdL~~~G~ElanG~~r~~d~~~~~~r~~~~~~~~~~  279 (356)
T d1l0wa3         200 VDFPLLEWDEEEEAWTYMHHPFTSPHPEDLPLLEKDPGRVRALAYDLVLNGVEVGGGSIRIHDPRLQARVFRLLGIGEEE  279 (356)
T ss_dssp             ECCBSBCCCTTTSCCCBSSCTTBCBCSTTTTHHHHCGGGCBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHTCCTTT
T ss_pred             CCCCCCCCCCHHCCEEEEECCCCCCCHHHHCHHHCCCCCCEEEEEECCCCCEEEECCEEEECCHHHHHHHHHHHCCCCHH
T ss_conf             36653113110012233437743687665100103888620212302338788621078717489999999997678323


Q ss_pred             --------------CCCCHHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf             --------------7751456787899999998699821133206
Q gi|254780757|r  160 --------------CSPISGEITYGLERLAMYVQNVNSVYDIVFN  190 (307)
Q Consensus       160 --------------c~pv~~EiTYGLERiaMylQ~vdnvyDl~wn  190 (307)
                                    =-|.++-+.-|+|||.|++-|.+||-|.+.=
T Consensus       280 ~~~~~~~yl~a~~~G~PP~~G~glGldRLlm~l~g~~~Irdvi~F  324 (356)
T d1l0wa3         280 QREKFGFFLEALEYGAPPHGGIAWGLDRLLALMTGSPSIREVIAF  324 (356)
T ss_dssp             HHHHTHHHHHHTTBTCCCEEEEEEEHHHHHHHHHTCSSGGGGSSS
T ss_pred             HHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHCCCCCHHHEECC
T ss_conf             577899999996679899623777099999998099958853468


No 28 
>d1zs9a1 c.108.1.22 (A:4-256) E-1 enzyme {Human(Homo sapiens) [TaxId: 9606]}
Probab=49.80  E-value=7.5  Score=16.81  Aligned_cols=88  Identities=9%  Similarity=0.017  Sum_probs=53.1

Q ss_pred             HHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEE-------EEECCCCHHHHHHHHHHHHHCCCCCCCCCEE
Q ss_conf             789874483440167641557887655466775001144445-------5757983358999999999819996217179
Q gi|254780757|r   47 STTLRALGPLSWKAAYVQPSRRPLDGRYAENPNRLQHYYQFQ-------VIIKPNPLNLQNLYIESLKAVGIDPLIHDVR  119 (307)
Q Consensus        47 ~T~lr~lg~~pw~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQ-------VilKPsp~niq~lYl~SL~~iGid~~~hDIr  119 (307)
                      ..+|+.|..+-.+++.+--+-++.-- .-..-..+..+.++-       ...||.|    +.|+.-++.+|++|  ..+-
T Consensus       133 ~e~l~~L~~~g~~l~i~Tn~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~KP~p----~~~~~~~~~~~~~p--~~~l  205 (253)
T d1zs9a1         133 VPAVRKWREAGMKVYIYSSGSVEAQK-LLFGHSTEGDILELVDGHFDTKIGHKVES----ESYRKIADSIGCST--NNIL  205 (253)
T ss_dssp             HHHHHHHHHTTCEEEEECSSCHHHHH-HHHHTBTTBCCGGGCSEEECGGGCCTTCH----HHHHHHHHHHTSCG--GGEE
T ss_pred             HHHHHHHHHCCCCEEECCCCCHHHHH-HHHHHCCCCHHHHHCCEEECCCCCCCCCC----HHHHHHHHHHCCCC--CCEE
T ss_conf             99999986424754445898488999-99997284043320233302453357780----88899999948996--7489


Q ss_pred             EEECCCCCCHHHHCCCCE-EEEEC
Q ss_conf             883288870011012321-76887
Q gi|254780757|r  120 FVEDNWESPTLGAWGLGW-ECWCD  142 (307)
Q Consensus       120 FveDnWEsPtLGAwGlGW-Evwld  142 (307)
                      ||+|+ .+--.||--.|+ -||++
T Consensus       206 ~vgD~-~~dv~aA~~aG~~ti~v~  228 (253)
T d1zs9a1         206 FLTDV-TREASAAEEADVHVAVVV  228 (253)
T ss_dssp             EEESC-HHHHHHHHHTTCEEEEEC
T ss_pred             EEECC-HHHHHHHHHCCCEEEEEE
T ss_conf             99479-999999998599799996


No 29 
>d2hdoa1 c.108.1.6 (A:1-207) Phosphoglycolate phosphatase {Lactobacillus plantarum [TaxId: 1590]}
Probab=44.11  E-value=9.1  Score=16.21  Aligned_cols=44  Identities=25%  Similarity=0.372  Sum_probs=33.6

Q ss_pred             ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEEEEE
Q ss_conf             579833589999999998199962171798832888700110123217688
Q gi|254780757|r   91 IKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWECWC  141 (307)
Q Consensus        91 lKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWEvwl  141 (307)
                      -||.|+    +|..-++.+|++|  .++-||+|. ++-..+|--.|..+.+
T Consensus       136 ~KP~p~----~~~~~~~~~~~~~--~~~l~VgDs-~~Di~~a~~aG~~~i~  179 (207)
T d2hdoa1         136 RKPDPL----PLLTALEKVNVAP--QNALFIGDS-VSDEQTAQAANVDFGL  179 (207)
T ss_dssp             CTTSSH----HHHHHHHHTTCCG--GGEEEEESS-HHHHHHHHHHTCEEEE
T ss_pred             CHHHHH----HHCCCCCCEEEEC--CCEEEECCC-HHHHHHHHHCCCEEEE
T ss_conf             103444----3002342104511--340685477-8789999984992999


No 30 
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Probab=43.93  E-value=1.8  Score=21.35  Aligned_cols=58  Identities=12%  Similarity=0.181  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHHCCCEEE-----ECCCCCCCCCCCC-------------HHHHHH-HCCCCCCEEEEECCCCCCCC
Q ss_conf             9999999999986695896-----1167543332248-------------578987-44834401676415578876
Q gi|254780757|r   14 QNIILTLTQYWAQQGCTIL-----QPYDMEVGAGTFH-------------PSTTLR-ALGPLSWKAAYVQPSRRPLD   71 (307)
Q Consensus        14 q~ii~~L~~fW~~~GC~i~-----qpyd~e~GAgT~h-------------p~T~lr-~lg~~pw~~aYvqPsrRP~D   71 (307)
                      ..||..+.+|-.++|-+=+     ++.+.|-++-.|.             |.-++. .|-.--=++-.+-||.|--+
T Consensus        38 s~i~~~iR~ff~~~gflEV~TPil~~~~~~~~~~~f~~~~~~~~~yL~~SpE~~lkrll~~g~~~if~i~~~FR~e~  114 (335)
T d1b8aa2          38 SSVFKAVRDFFHENGFIEIHTPKIIATATEGGTELFPMKYFEEDAFLAESPQLYKEIMMASGLDRVYEIAPIFRAEE  114 (335)
T ss_dssp             HHHHHHHHHHHHHTTCEECCCCSEESCCCSSSSSCCEEEETTEEEEECSCSHHHHHHGGGTTCCEEEEEEEEECCCS
T ss_pred             HHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             99999999999988999987986576577213320121122344212368578777777640666878330235222


No 31 
>d1vjra_ c.108.1.14 (A:) Hypothetical protein TM1742 {Thermotoga maritima [TaxId: 2336]}
Probab=43.81  E-value=7.8  Score=16.68  Aligned_cols=45  Identities=20%  Similarity=0.181  Sum_probs=35.5

Q ss_pred             ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEE
Q ss_conf             579833589999999998199962171798832888700110123217-688
Q gi|254780757|r   91 IKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWC  141 (307)
Q Consensus        91 lKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vwl  141 (307)
                      -||+|.-+.    .-++.+|+++  +++-+|-|++++--.||--.||- ||.
T Consensus       184 ~KP~p~~~~----~a~~~l~~~~--~~~lmVGD~~~~DI~ga~~aG~~si~V  229 (261)
T d1vjra_         184 GKPNPLVVD----VISEKFGVPK--ERMAMVGDRLYTDVKLGKNAGIVSILV  229 (261)
T ss_dssp             STTSTHHHH----HHHHHHTCCG--GGEEEEESCHHHHHHHHHHHTCEEEEE
T ss_pred             CCCCHHHHH----HHHHHHCCCC--HHCCEECCCHHHHHHHHHHCCCCEEEE
T ss_conf             799578888----8876640472--211031687167899999879969998


No 32 
>d1g8ma2 c.97.1.4 (A:201-593) AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=37.15  E-value=11  Score=15.48  Aligned_cols=30  Identities=30%  Similarity=0.548  Sum_probs=15.8

Q ss_pred             CCCCCCCCC-CEEEE------EEEE-ECCCCHHHHHHH
Q ss_conf             546677500-11444------4557-579833589999
Q gi|254780757|r   73 RYAENPNRL-QHYYQ------FQVI-IKPNPLNLQNLY  102 (307)
Q Consensus        73 RYGeNPNRl-q~y~Q------fQVi-lKPsp~niq~lY  102 (307)
                      ||||||.-- --||.      ++++ =|+|-.|+.|+.
T Consensus         8 RYGENPHQ~aA~~~~~~~~~~~~~l~gk~SyNN~lD~d   45 (393)
T d1g8ma2           8 RYGMNPHQSPAQLYTTRPKLPLTVVNGSPGFINLCDAL   45 (393)
T ss_dssp             SCSSSTTSCCEEEECSSSSCSEEEEESCCCHHHHHHHH
T ss_pred             CCCCCCCCCCCEEECCCCCCHHHHHCCCCCHHHHHHHH
T ss_conf             79768054113862168743168866870276798899


No 33 
>d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]}
Probab=32.96  E-value=8  Score=16.59  Aligned_cols=126  Identities=13%  Similarity=0.047  Sum_probs=77.9

Q ss_pred             HHHHCCCCCCEEEEECCCCCCC-CCCCCCCCCCCCEEEEEEEEECCCCHHHH-------HHHHHHHHHCCCCCCCCCEEE
Q ss_conf             9874483440167641557887-65546677500114444557579833589-------999999998199962171798
Q gi|254780757|r   49 TLRALGPLSWKAAYVQPSRRPL-DGRYAENPNRLQHYYQFQVIIKPNPLNLQ-------NLYIESLKAVGIDPLIHDVRF  120 (307)
Q Consensus        49 ~lr~lg~~pw~~aYvqPsrRP~-DgRYGeNPNRlq~y~QfQVilKPsp~niq-------~lYl~SL~~iGid~~~hDIrF  120 (307)
                      ..++-+.=|.++|=++-|.|.. -||.|-  -|+-...|.-.-+==+|+.+.       ++.+..+..+|+++.  -+||
T Consensus       138 ~~~syk~LP~~~aqig~~fR~E~s~~~gl--~RvReFtq~D~~~F~~~~q~~~~~~~~~~~~~~~~~~~g~~~~--~lr~  213 (331)
T d1b76a2         138 LDATSRKLGFGIAQIGKAFRNEITPRNFI--FRVREFEQMEIEYFVRPGEDEYWHRYWVEERLKWWQEMGLSRE--NLVP  213 (331)
T ss_dssp             HHHHTCCSSEEEEEEEEEECCCSSCCTTT--TSCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHTTCCGG--GEEE
T ss_pred             HHCCCCCCCHHHHHCCCEECCCCCCCCCC--CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCH--HEEE
T ss_conf             75354435603222052323665555443--3200311100342048752067999999999999998625622--1364


Q ss_pred             EE-CCCCCCHHHHCCC--------CEEEEE---C-------------------------CEEEHHHHHHHHHCCCCCCCC
Q ss_conf             83-2888700110123--------217688---7-------------------------874147778998668257751
Q gi|254780757|r  121 VE-DNWESPTLGAWGL--------GWECWC---D-------------------------GMEISQFTYFQQVCGIECSPI  163 (307)
Q Consensus       121 ve-DnWEsPtLGAwGl--------GWEvwl---d-------------------------GMEItQFTYFQQvGGi~c~pv  163 (307)
                      .. +.||...-+....        ||.-..   +                         -......+||...+|-.-.|+
T Consensus       214 ~~~~~~e~a~~~~~~~~~e~~~~~g~~e~eg~~y~~~~Dl~~~~~~~~~~~~~~~q~d~~~s~~~l~~~d~e~g~k~~P~  293 (331)
T d1b76a2         214 YQQPPESSAHYAKATVDILYRFPHGSLELEGIAQRTDFDLGSHTKDQEALGITARVLRNEHSTQRLAYRDPETGKWFVPY  293 (331)
T ss_dssp             EECCTTSSCTTEEEEEEEEEEETTEEEEEEEEEEECSHHHHHTCTTTTTTTCCSCCCCCSSCSSCCCEECSSSSCEECCE
T ss_pred             EEECCCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCEEEECE
T ss_conf             21044301445689999974499760023122146554440012455543311355136776430479936799378266


Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             456787899999998
Q gi|254780757|r  164 SGEITYGLERLAMYV  178 (307)
Q Consensus       164 ~~EiTYGLERiaMyl  178 (307)
                      .+|-.||+||+.+.+
T Consensus       294 vIe~S~GieR~~~ai  308 (331)
T d1b76a2         294 VIEPSAGVDRGVLAL  308 (331)
T ss_dssp             EEEEEEEHHHHHHHH
T ss_pred             EEECCCCHHHHHHHH
T ss_conf             997288753899999


No 34 
>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS) {Escherichia coli [TaxId: 562]}
Probab=32.77  E-value=5.2  Score=17.99  Aligned_cols=60  Identities=12%  Similarity=-0.030  Sum_probs=36.8

Q ss_pred             CHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCC----------HHHHCCCCEEEEECCEEEHHHHHHHHHCCCCC
Q ss_conf             3358999999999819996217179883288870----------01101232176887874147778998668257
Q gi|254780757|r   95 PLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESP----------TLGAWGLGWECWCDGMEISQFTYFQQVCGIEC  160 (307)
Q Consensus        95 p~niq~lYl~SL~~iGid~~~hDIrFveDnWEsP----------tLGAwGlGWEvwldGMEItQFTYFQQvGGi~c  160 (307)
                      -...-+.-+++|+-+||+....-++      .|.          .|=+-|+-+.++|.-=|+.+.-=-++-.|.+|
T Consensus        67 ~~~~~~~I~~dL~WLGl~wD~~~~~------QS~r~~~Y~~~~~~L~~~G~aY~C~cs~eel~~~r~~~~~~g~~~  136 (331)
T d1gtra2          67 DIEYVESIKNDVEWLGFHWSGNVRY------SSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNS  136 (331)
T ss_dssp             CHHHHHHHHHHHHHTTCCCSSSCEE------GGGGHHHHHHHHHHHHHTTSEEEECCCHHHHHHHTCCSSSCCCCC
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCCEE------CCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf             5557999999999975034666400------562999999999865336886446451999999775541169998


No 35 
>d1v54f_ g.41.5.3 (F:) Cytochrome c oxidase Subunit F {Cow (Bos taurus) [TaxId: 9913]}
Probab=26.88  E-value=13  Score=14.98  Aligned_cols=27  Identities=33%  Similarity=0.493  Sum_probs=16.1

Q ss_pred             CCHHHHHHHHHHHHHH--HCCCCCEEEEEE
Q ss_conf             5145678789999999--869982113320
Q gi|254780757|r  162 PISGEITYGLERLAMY--VQNVNSVYDIVF  189 (307)
Q Consensus       162 pv~~EiTYGLERiaMy--lQ~vdnvyDl~w  189 (307)
                      |-..|..-||||.-|-  ++|+| +||+.-
T Consensus         7 ptd~EqATGlEr~ella~~~g~D-~fd~~~   35 (98)
T d1v54f_           7 PTDEEQATGLEREVMLAARKGQD-PYNILA   35 (98)
T ss_dssp             CCHHHHCCHHHHHHHHHHHTTCC-TTCCSC
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCC-HHHCCC
T ss_conf             98678711288999999864998-233457


No 36 
>d2fi1a1 c.108.1.3 (A:4-190) Putative hydrolase SP0805 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=25.38  E-value=18  Score=14.12  Aligned_cols=46  Identities=15%  Similarity=0.125  Sum_probs=29.8

Q ss_pred             ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEECCEE
Q ss_conf             579833589999999998199962171798832888700110123217-6887874
Q gi|254780757|r   91 IKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWCDGME  145 (307)
Q Consensus        91 lKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vwldGME  145 (307)
                      -||.|+.    |..-++.+|+++    .-||+|. .+--.+|.-.|=. ||.++.+
T Consensus       133 ~KP~p~~----~~~~~~~~~~~~----~l~vgDs-~~Di~aA~~aG~~~i~v~~~~  179 (187)
T d2fi1a1         133 RKPNPES----MLYLREKYQISS----GLVIGDR-PIDIEAGQAAGLDTHLFTSIV  179 (187)
T ss_dssp             CTTSCHH----HHHHHHHTTCSS----EEEEESS-HHHHHHHHHTTCEEEECSCHH
T ss_pred             CCCCHHH----HHHHHHHCCCCC----EEEEECC-HHHHHHHHHCCCEEEEECCCC
T ss_conf             6888999----999999849997----6999079-999999998599799999988


No 37 
>d1u7la_ e.57.1.1 (A:) Vacuolar ATP synthase subunit C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=24.66  E-value=13  Score=15.05  Aligned_cols=20  Identities=15%  Similarity=0.298  Sum_probs=10.8

Q ss_pred             ECCCCHHHHHHHHHHHHHCC
Q ss_conf             57983358999999999819
Q gi|254780757|r   91 IKPNPLNLQNLYIESLKAVG  110 (307)
Q Consensus        91 lKPsp~niq~lYl~SL~~iG  110 (307)
                      +=--|.+.++-++.+-+.+.
T Consensus       191 lVvVPk~~~~dwl~~YEtL~  210 (388)
T d1u7la_         191 LVAVPKSLKSDFEKSYETLS  210 (388)
T ss_dssp             EEEEEGGGHHHHHHHGGGSS
T ss_pred             EEEEECCCHHHHHHHHHHHC
T ss_conf             99961531788999986325


No 38 
>d1wdia_ e.53.1.1 (A:) Queuosine biosynthesis protein queA {Thermus thermophilus [TaxId: 274]}
Probab=23.72  E-value=19  Score=13.91  Aligned_cols=25  Identities=28%  Similarity=0.555  Sum_probs=14.5

Q ss_pred             HHHHHCCCCCCEEEEECCCCCCCCCC
Q ss_conf             89874483440167641557887655
Q gi|254780757|r   48 TTLRALGPLSWKAAYVQPSRRPLDGR   73 (307)
Q Consensus        48 T~lr~lg~~pw~~aYvqPsrRP~DgR   73 (307)
                      .+++.+++..|.+ .+.|++|..-|.
T Consensus        82 lll~~~~~~~w~a-l~kp~kk~k~G~  106 (344)
T d1wdia_          82 LLVRERSPGLWEA-LLGPARKAPPGT  106 (344)
T ss_dssp             EECBCC------C-CBCCCSCCCSCE
T ss_pred             EEECCCCCCEEEE-EECCCCCCCCCC
T ss_conf             9831248970899-953367789998


No 39 
>d2cyga1 c.1.8.3 (A:29-340) Plant beta-glucanases {Banana (Musa acuminata), 1,3-beta-glucanase [TaxId: 4641]}
Probab=23.23  E-value=19  Score=13.84  Aligned_cols=15  Identities=27%  Similarity=0.270  Sum_probs=6.9

Q ss_pred             CHHHHHHHHHHHHHH
Q ss_conf             017889999999999
Q gi|254780757|r  276 ISTTERQRYILRIRS  290 (307)
Q Consensus       276 ISVTERq~YI~RIR~  290 (307)
                      -|+..-+.|+..++.
T Consensus       248 as~~na~~y~~~l~~  262 (312)
T d2cyga1         248 ASTSNAQTYNQNLIR  262 (312)
T ss_dssp             SSHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
T ss_conf             899999999999999


No 40 
>d1prtb1 b.40.2.1 (B:90-199) Pertussis toxin S2/S3 subunits, C-terminal domain {Bordetella pertussis [TaxId: 520]}
Probab=22.93  E-value=12  Score=15.36  Aligned_cols=57  Identities=21%  Similarity=0.329  Sum_probs=39.5

Q ss_pred             EECCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCEE-EEECCCCCCHHHHCCCC
Q ss_conf             6415578876554667750011444455757983358999999999819996217179-88328887001101232
Q gi|254780757|r   62 YVQPSRRPLDGRYAENPNRLQHYYQFQVIIKPNPLNLQNLYIESLKAVGIDPLIHDVR-FVEDNWESPTLGAWGLG  136 (307)
Q Consensus        62 YvqPsrRP~DgRYGeNPNRlq~y~QfQVilKPsp~niq~lYl~SL~~iGid~~~hDIr-FveDnWEsPtLGAwGlG  136 (307)
                      -||.|-+|-+|||++--.+|-                  --|.-+..-|+-.+.|--+ =--|+.|-||.-+..|-
T Consensus        41 vigAC~sPy~gry~~mY~~LR------------------r~Ly~iy~~Gl~vRVhVskeeqyydyedatf~tYalT   98 (110)
T d1prtb1          41 VIGACTSPYDGKYWSMYSRLR------------------KMLYLIYVAGISVRVHVSKEEQYYDYEDATFETYALT   98 (110)
T ss_dssp             EEEEEECSSSSTTSTTHHHHH------------------HHHHHHHHHTCCEEEEEEEEEEECCSTTCSSCCEEEE
T ss_pred             EEHEECCCCCCCHHHHHHHHH------------------HHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCEEEE
T ss_conf             000006854462366889999------------------9999999738558999765446541014775315564


No 41 
>d1my7a_ b.1.18.1 (A:) p65 subunit of NF-kappa B (NFKB), dimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.83  E-value=13  Score=15.11  Aligned_cols=18  Identities=28%  Similarity=0.398  Sum_probs=9.8

Q ss_pred             CCCCCCCCC--EEEEECCCC
Q ss_conf             199962171--798832888
Q gi|254780757|r  109 VGIDPLIHD--VRFVEDNWE  126 (307)
Q Consensus       109 iGid~~~hD--IrFveDnWE  126 (307)
                      ||=+....|  |||.|.+||
T Consensus        25 lc~kv~kddi~V~F~E~~WE   44 (107)
T d1my7a_          25 LCDKVQKEDIEVYFTGPGWE   44 (107)
T ss_dssp             EESCCCTTSCEEEEEETTEE
T ss_pred             EECCCCCCCCEEEEECCCCE
T ss_conf             94543668879999635828


No 42 
>d2ns0a1 a.4.5.76 (A:1-85) Hypothetical protein RHA1_ro06458 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=21.59  E-value=17  Score=14.25  Aligned_cols=29  Identities=28%  Similarity=0.623  Sum_probs=21.0

Q ss_pred             CCC-CCCCHHHHHHHCCCCCCEEEEECCCCC
Q ss_conf             333-224857898744834401676415578
Q gi|254780757|r   39 VGA-GTFHPSTTLRALGPLSWKAAYVQPSRR   68 (307)
Q Consensus        39 ~GA-gT~hp~T~lr~lg~~pw~~aYvqPsrR   68 (307)
                      -|. .|+.|.-.-|+|+|+.|+. +.+|.|+
T Consensus        19 R~~~~ticPsEvARal~~~~WR~-lM~~vR~   48 (85)
T d2ns0a1          19 RADSASICPSDVARAVAPDDWRP-LMEPVRE   48 (85)
T ss_dssp             SCTTCCBCHHHHHHHHCTTSCGG-GHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHCCHHHHH-HHHHHHH
T ss_conf             49989749899998868471688-7399999


No 43 
>d1v29a_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase {Bacillus smithii [TaxId: 1479]}
Probab=20.93  E-value=21  Score=13.52  Aligned_cols=49  Identities=20%  Similarity=0.150  Sum_probs=39.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH----HH--HHHHHHHHHHHHHH
Q ss_conf             382899999999987888387501788999999----99--99999999999854
Q gi|254780757|r  254 FPAYDQCIKASHIFNLLDARGVISTTERQRYIL----RI--RSLAKACGEAFLMT  302 (307)
Q Consensus       254 lPAYD~~LKaSH~FNLLDARGaISVTERq~YI~----RI--R~Lak~~A~ayl~~  302 (307)
                      -|-=++-++.-.+--||-.+|.|+-.+-...|-    ||  ++=||.+|+||++.
T Consensus        10 ~~~s~~e~rv~ALe~LLieKGlit~~~id~~ie~~e~~vgP~nGArvVARAW~Dp   64 (203)
T d1v29a_          10 RPQSFWEARAKALESLLIEKRLLSSDAIERVIKHYEHELGPMNGAKVVAKAWTDP   64 (203)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTTCCTHHHHHHHHHHTTCH
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCH
T ss_conf             9965699999999999998699998999999999976349831789999883699


No 44 
>d2f6ma1 a.2.17.1 (A:322-385) Vacuolar protein sorting-associated protein 23, VPS23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.26  E-value=22  Score=13.43  Aligned_cols=20  Identities=30%  Similarity=0.506  Sum_probs=16.5

Q ss_pred             HCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             38750178899999999999999
Q gi|254780757|r  272 ARGVISTTERQRYILRIRSLAKA  294 (307)
Q Consensus       272 ARGaISVTERq~YI~RIR~Lak~  294 (307)
                      -||.|++.   .|+..||.|||.
T Consensus        29 ~~G~I~~d---~ylK~vR~LaRe   48 (64)
T d2f6ma1          29 HRGTIPLD---TFVKQGRELARQ   48 (64)
T ss_dssp             HHTSSCHH---HHHHHHHHHHHH
T ss_pred             HCCCCCHH---HHHHHHHHHHHH
T ss_conf             86976799---999999999999


Done!