Query gi|254780757|ref|YP_003065170.1| glycyl-tRNA synthetase subunit alpha [Candidatus Liberibacter asiaticus str. psy62] Match_columns 307 No_of_seqs 141 out of 623 Neff 3.4 Searched_HMMs 13730 Date Wed Jun 1 06:30:48 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780757.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1j5wa_ d.104.1.1 (A:) Glycyl- 100.0 0 0 1223.2 22.5 281 11-305 1-281 (281) 2 d1riqa2 d.104.1.1 (A:1-236) Al 98.0 2.3E-06 1.7E-10 63.9 4.4 164 10-185 1-236 (236) 3 d1qq5a_ c.108.1.1 (A:) L-2-Hal 88.9 0.16 1.2E-05 28.9 3.3 44 92-142 147-191 (245) 4 d2gfha1 c.108.1.6 (A:1-247) N- 84.8 0.59 4.3E-05 24.8 4.3 47 91-143 163-211 (247) 5 d1n9wa2 d.104.1.1 (A:111-414) 84.0 0.34 2.5E-05 26.5 2.8 61 13-73 18-96 (304) 6 d1eova2 d.104.1.1 (A:205-557) 83.9 0.43 3.1E-05 25.8 3.3 59 131-189 260-343 (353) 7 d1wvia_ c.108.1.14 (A:) Putati 83.0 0.88 6.4E-05 23.5 4.6 44 92-141 180-224 (253) 8 d2g80a1 c.108.1.22 (A:17-241) 77.1 1.2 8.7E-05 22.6 3.7 44 92-142 159-203 (225) 9 d1x42a1 c.108.1.1 (A:1-230) Hy 76.7 2.1 0.00015 20.8 4.8 47 90-142 153-200 (230) 10 d2c4na1 c.108.1.14 (A:1-250) N 74.9 2.6 0.00019 20.2 4.9 49 87-141 171-219 (250) 11 d1yv9a1 c.108.1.14 (A:4-256) P 74.7 1.9 0.00014 21.1 4.2 46 90-141 178-223 (253) 12 d2b0ca1 c.108.1.2 (A:8-204) Pu 74.0 2.8 0.00021 19.9 4.9 89 48-143 91-186 (197) 13 d2fdra1 c.108.1.6 (A:3-224) Hy 72.1 1.7 0.00012 21.5 3.4 45 91-142 140-185 (222) 14 d1zrna_ c.108.1.1 (A:) L-2-Hal 71.5 1.5 0.00011 22.0 3.0 87 48-142 100-193 (220) 15 d1zd3a1 c.108.1.2 (A:2-224) Ep 70.2 1.7 0.00012 21.5 3.0 96 41-143 97-204 (225) 16 d1seta2 d.104.1.1 (A:111-421) 70.1 3.1 0.00022 19.6 4.4 111 55-189 133-265 (311) 17 d1jjca_ d.104.1.1 (A:) Phenyl- 67.6 0.7 5.1E-05 24.3 0.7 129 53-190 105-253 (266) 18 d1zcza2 c.97.1.4 (A:158-452) A 67.6 2.1 0.00016 20.8 3.1 32 71-102 11-48 (295) 19 d1nnha_ d.104.1.1 (A:) Hypothe 65.8 0.4 2.9E-05 26.0 -0.9 171 14-189 18-282 (293) 20 d2go7a1 c.108.1.6 (A:3-206) Hy 64.3 3.1 0.00022 19.6 3.4 44 91-141 136-179 (204) 21 d1g5ha2 d.104.1.1 (A:41-330) T 59.6 1.7 0.00012 21.5 1.4 117 52-177 134-282 (290) 22 d1o08a_ c.108.1.6 (A:) beta-Ph 57.6 5.1 0.00037 18.1 3.6 45 91-142 144-189 (221) 23 d1te2a_ c.108.1.6 (A:) Phospha 56.9 5.3 0.00039 17.9 3.6 44 91-141 143-186 (218) 24 d1cr6a1 c.108.1.2 (A:4-225) Ep 56.9 5.9 0.00043 17.6 4.4 88 48-142 104-201 (222) 25 d1c0aa3 d.104.1.1 (A:107-287,A 54.7 0.8 5.9E-05 23.8 -0.9 60 14-73 36-116 (346) 26 d1e1oa2 d.104.1.1 (A:161-502) 54.2 0.79 5.7E-05 23.9 -1.0 74 14-91 27-121 (342) 27 d1l0wa3 d.104.1.1 (A:105-294,A 53.8 0.84 6.1E-05 23.7 -0.9 173 14-190 44-324 (356) 28 d1zs9a1 c.108.1.22 (A:4-256) E 49.8 7.5 0.00055 16.8 3.4 88 47-142 133-228 (253) 29 d2hdoa1 c.108.1.6 (A:1-207) Ph 44.1 9.1 0.00066 16.2 3.5 44 91-141 136-179 (207) 30 d1b8aa2 d.104.1.1 (A:104-438) 43.9 1.8 0.00013 21.4 -0.5 58 14-71 38-114 (335) 31 d1vjra_ c.108.1.14 (A:) Hypoth 43.8 7.8 0.00057 16.7 2.7 45 91-141 184-229 (261) 32 d1g8ma2 c.97.1.4 (A:201-593) A 37.2 11 0.00083 15.5 3.4 30 73-102 8-45 (393) 33 d1b76a2 d.104.1.1 (A:1-394) Gl 33.0 8 0.00059 16.6 1.4 126 49-178 138-308 (331) 34 d1gtra2 c.26.1.1 (A:8-338) Glu 32.8 5.2 0.00038 18.0 0.4 60 95-160 67-136 (331) 35 d1v54f_ g.41.5.3 (F:) Cytochro 26.9 13 0.00098 15.0 1.7 27 162-189 7-35 (98) 36 d2fi1a1 c.108.1.3 (A:4-190) Pu 25.4 18 0.0013 14.1 2.6 46 91-145 133-179 (187) 37 d1u7la_ e.57.1.1 (A:) Vacuolar 24.7 13 0.00096 15.0 1.3 20 91-110 191-210 (388) 38 d1wdia_ e.53.1.1 (A:) Queuosin 23.7 19 0.0014 13.9 2.2 25 48-73 82-106 (344) 39 d2cyga1 c.1.8.3 (A:29-340) Pla 23.2 19 0.0014 13.8 3.2 15 276-290 248-262 (312) 40 d1prtb1 b.40.2.1 (B:90-199) Pe 22.9 12 0.00087 15.4 0.8 57 62-136 41-98 (110) 41 d1my7a_ b.1.18.1 (A:) p65 subu 21.8 13 0.00094 15.1 0.8 18 109-126 25-44 (107) 42 d2ns0a1 a.4.5.76 (A:1-85) Hypo 21.6 17 0.0012 14.2 1.4 29 39-68 19-48 (85) 43 d1v29a_ d.149.1.1 (A:) Cobalt- 20.9 21 0.0016 13.5 4.6 49 254-302 10-64 (203) 44 d2f6ma1 a.2.17.1 (A:322-385) V 20.3 22 0.0016 13.4 2.0 20 272-294 29-48 (64) No 1 >d1j5wa_ d.104.1.1 (A:) Glycyl-tRNA synthetase (GlyRS) alpha chain {Thermotoga maritima [TaxId: 2336]} Probab=100.00 E-value=0 Score=1223.22 Aligned_cols=281 Identities=58% Similarity=1.037 Sum_probs=278.6 Q ss_pred CCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEE Q ss_conf 77999999999999866958961167543332248578987448344016764155788765546677500114444557 Q gi|254780757|r 11 LSFQNIILTLTQYWAQQGCTILQPYDMEVGAGTFHPSTTLRALGPLSWKAAYVQPSRRPLDGRYAENPNRLQHYYQFQVI 90 (307) Q Consensus 11 ~~fq~ii~~L~~fW~~~GC~i~qpyd~e~GAgT~hp~T~lr~lg~~pw~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQVi 90 (307) |+|||||++||+||+++||+|+||||+|||||||||+||||+||||||++|||||||||+|||||+|||||||||||||| T Consensus 1 m~fq~~i~~L~~~W~~~gC~i~qpyd~evGAgT~~p~T~lr~lgp~pw~~ayvqpsrRP~DgRYg~NPNRlq~y~QfQVi 80 (281) T d1j5wa_ 1 MYLQDVIMKLNDFWASKGCLLEQPYDMEVGAGTFHPATFFGSLRKGPWKVAYVQPSRRPTDGRYGENPNRLQRYFQYQVI 80 (281) T ss_dssp CCHHHHHHHHHHHHHHTTCEECCCCSSCCSSGGGSHHHHTGGGCSSCEEEEEEEEEECCC-----CCTTCCSEEEEEEEE T ss_pred CCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHEEEE T ss_conf 96899999999999878978977765544646687588874049987532343556688654335892044345530235 Q ss_pred ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEEEEECCEEEHHHHHHHHHCCCCCCCCHHHHHHH Q ss_conf 57983358999999999819996217179883288870011012321768878741477789986682577514567878 Q gi|254780757|r 91 IKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWECWCDGMEISQFTYFQQVCGIECSPISGEITYG 170 (307) Q Consensus 91 lKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWEvwldGMEItQFTYFQQvGGi~c~pv~~EiTYG 170 (307) |||||+|+|+|||+||++||||+++||||||||||||||||||||||||||||||||||||||||||++|+||++||||| T Consensus 81 ~KPsp~n~q~lyL~SL~~igid~~~hDIrfvEDnWEsPtlGAwGlGWEVwldGMEItQFTYFQQvGg~~c~pv~~EiTYG 160 (281) T d1j5wa_ 81 IKPSPENSQELYLESLEYLGINLKEHDIRFVEDNWESPTLGAWGVGWEVWLDGMEITQFTYFQQIGGISLKDIPLEITYG 160 (281) T ss_dssp EESCCSSHHHHHHHHHHHTTCCTTTSCEEEEEECCEEGGGTEEEEEEEEEETTEEEEEEEEEEEBTTBCCSSCCEEEEEE T ss_pred ECCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCEEEEEEEEECCEEEEEEEHHHHHCCCCCCCCCHHHHHH T ss_conf 05894128999999999819993214257873167687602102224788767366532163563683256530554432 Q ss_pred HHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 99999998699821133206888788311062447469977763501798999999999999999998500665323355 Q gi|254780757|r 171 LERLAMYVQNVNSVYDIVFNAIEGQNVLYGDIFAQSEQEYSRYNFEYANPEILHNHFIDSEKECLDLLKKGIPNEHHRHH 250 (307) Q Consensus 171 LERiaMylQ~vdnvyDl~wn~~~~~~vtYGdif~q~E~E~S~YNFE~Ad~~~L~~~F~~yE~Ea~rLle~~LP~~~~~~~ 250 (307) |||||||||+|||||||.|| +++||||||+|+|+|||+||||+||+++|+++|++||+||++|++++|| T Consensus 161 LERiaMylQ~vd~v~Dl~wn----~~vtYgDvf~q~E~E~S~YNFE~Ad~~~L~~~F~~yE~Ea~~Lle~~L~------- 229 (281) T d1j5wa_ 161 LERIAMYLQGVDNVYEVQWN----ENVKYGDVFLENEREFSVFNFEEANVGLLFRHFDEYEKEFYRLVEKNLY------- 229 (281) T ss_dssp HHHHHHHHHTCSSGGGCEEE----TTEEHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCH------- T ss_pred HHHHHHHHHCCCHHEEEECC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC------- T ss_conf 89999998486404032224----8944679887769999998698731999999999999999999865998------- Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 3013828999999999878883875017889999999999999999999854516 Q gi|254780757|r 251 LCVFPAYDQCIKASHIFNLLDARGVISTTERQRYILRIRSLAKACGEAFLMTPNG 305 (307) Q Consensus 251 ~lvlPAYD~~LKaSH~FNLLDARGaISVTERq~YI~RIR~Lak~~A~ayl~~re~ 305 (307) +||||+||||||+||||||||||||||||+||+|||+|||+||++|+++|+. T Consensus 230 ---lPAYD~~LKaSH~FNLLDARGaISVTERa~YI~RIR~LAk~~a~~yle~r~n 281 (281) T d1j5wa_ 230 ---LPAYDYILKCSHTFNLLDARGAISVSQRQTYVKRIQAMARKAARVFLEVQAN 281 (281) T ss_dssp ---HHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_pred ---CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf ---5279999998878764611688548998999999999999999999986459 No 2 >d1riqa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} Probab=98.02 E-value=2.3e-06 Score=63.93 Aligned_cols=164 Identities=21% Similarity=0.246 Sum_probs=110.2 Q ss_pred CCCHHHHHHHHHHHHHHCCCEEEECCCCC---------CCCC--CCCHHHHHHHCCCCCCEEEEECCCCCCCC----C-- Q ss_conf 77799999999999986695896116754---------3332--24857898744834401676415578876----5-- Q gi|254780757|r 10 DLSFQNIILTLTQYWAQQGCTILQPYDME---------VGAG--TFHPSTTLRALGPLSWKAAYVQPSRRPLD----G-- 72 (307) Q Consensus 10 ~~~fq~ii~~L~~fW~~~GC~i~qpyd~e---------~GAg--T~hp~T~lr~lg~~pw~~aYvqPsrRP~D----g-- 72 (307) .|+-++|-.+--+|.+++|+.++.++.+= +.|| -|-|. |+...-|..-+++-+|+|-|-.| . T Consensus 1 ~mt~~eiR~~Fl~FF~~~gH~~v~s~slvp~~DptlLFtnAGM~~Fkp~-flG~~~p~~~r~~~~QkCiR~~gk~nDld~ 79 (236) T d1riqa2 1 SLSAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNV-FLGLEKRPYKRATSCQKCLRVSGKHNDLEQ 79 (236) T ss_dssp CCCHHHHHHHHHHHHHHTTCEECCCCCSSCTTCTTCSSCCSTTGGGHHH-HTTSSCCSCSEEEEEEEEECEETTEECTTT T ss_pred CCCHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCEEEECCCCHHHHHH-HCCCCCCCCCCCCCCCCCCCCCCCCCHHHH T ss_conf 9988999999999998679988578773569999746541010222666-467645677764443214011674302231 Q ss_pred -------------------------------------CCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCC Q ss_conf -------------------------------------5466775001144445575798335899999999981999621 Q gi|254780757|r 73 -------------------------------------RYAENPNRLQHYYQFQVIIKPNPLNLQNLYIESLKAVGIDPLI 115 (307) Q Consensus 73 -------------------------------------RYGeNPNRlq~y~QfQVilKPsp~niq~lYl~SL~~iGid~~~ 115 (307) .+|-.|+||.-- +-+. -.+.+--=++.+||++. T Consensus 80 VG~t~rH~TfFEMLGn~SFgdYfK~eai~~awe~lt~~l~l~~~rl~vt-----v~~~----D~e~~~~w~~~~gi~~~- 149 (236) T d1riqa2 80 VGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPKEKLYVS-----VYKD----DEEAYRIWNEHIGIPSE- 149 (236) T ss_dssp TTTSSSCCSEEEEEEEEESSSCCHHHHHHHHHHHHHHTSCCCGGGEEEE-----EETT----CHHHHHHHHTTTCCCGG- T ss_pred CCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEE-----EECC----CHHHHHHHHHHCCCCCC- T ss_conf 3876531105554352013860288899999999888851576424787-----5157----48998888760482004- Q ss_pred CCEEEE---ECCCCCCHHHHCCCCEEEEECC----------EEEHHHHHHH---HHCCC--CCCCCHHHHHHHHHHHHHH Q ss_conf 717988---3288870011012321768878----------7414777899---86682--5775145678789999999 Q gi|254780757|r 116 HDVRFV---EDNWESPTLGAWGLGWECWCDG----------MEISQFTYFQ---QVCGI--ECSPISGEITYGLERLAMY 177 (307) Q Consensus 116 hDIrFv---eDnWEsPtLGAwGlGWEvwldG----------MEItQFTYFQ---QvGGi--~c~pv~~EiTYGLERiaMy 177 (307) .|-+. |.=|+..--|.-|=-=|+--|+ +||--.-+.| .-.|. ++.--.+.--+|||||||. T Consensus 150 -rI~~~~~~dNfW~~g~~GpcGPcsEi~yd~g~~~~~~~r~lEIwNlVFmqy~~~~~G~~~~L~~k~IDTGmGLERi~~v 228 (236) T d1riqa2 150 -RIWRLGEEDNFWQMGDVGPCGPSSEIYVDRGEEYEGDERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASV 228 (236) T ss_dssp -GEEEECHHHHEEESSSSEEEEEEEEEEEECCTTSCHHHHEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEHHHHHHH T ss_pred -CCEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEEEEEHEEEEECCCCCCCCCCCCCCCCCCCHHHHHHH T ss_conf -4153377777240689777776534787133333789765663110010001068986543889716589669999999 Q ss_pred HCCCCCEE Q ss_conf 86998211 Q gi|254780757|r 178 VQNVNSVY 185 (307) Q Consensus 178 lQ~vdnvy 185 (307) +|++.|+| T Consensus 229 lqg~~s~y 236 (236) T d1riqa2 229 LQGKNSNF 236 (236) T ss_dssp HTTCSSGG T ss_pred HCCCCCCC T ss_conf 85999899 No 3 >d1qq5a_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Xanthobacter autotrophicus [TaxId: 280]} Probab=88.90 E-value=0.16 Score=28.90 Aligned_cols=44 Identities=30% Similarity=0.456 Sum_probs=38.4 Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEEC Q ss_conf 79833589999999998199962171798832888700110123217-6887 Q gi|254780757|r 92 KPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWCD 142 (307) Q Consensus 92 KPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vwld 142 (307) ||.|+ .|..-++.+|++|. ++-||+|+ .+-..||...|+. ||.+ T Consensus 147 KP~p~----~f~~a~~~lg~~p~--e~l~VgD~-~~di~~A~~aG~~tv~v~ 191 (245) T d1qq5a_ 147 KPHPD----SYALVEEVLGVTPA--EVLFVSSN-GFDVGGAKNFGFSVARVA 191 (245) T ss_dssp TTSHH----HHHHHHHHHCCCGG--GEEEEESC-HHHHHHHHHHTCEEEEEC T ss_pred CCCHH----HHHHHHHHHCCCHH--HEEEEECC-HHHHHHHHHCCCEEEEEC T ss_conf 86389----99999999197843--38999389-999999998699299984 No 4 >d2gfha1 c.108.1.6 (A:1-247) N-acylneuraminate-9-phosphatase NANP {Mouse (Mus musculus) [TaxId: 10090]} Probab=84.75 E-value=0.59 Score=24.83 Aligned_cols=47 Identities=26% Similarity=0.532 Sum_probs=38.8 Q ss_pred ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE--EEECC Q ss_conf 579833589999999998199962171798832888700110123217--68878 Q gi|254780757|r 91 IKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE--CWCDG 143 (307) Q Consensus 91 lKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE--vwldG 143 (307) -||+|+ +|..-++.+|++|. ++-||.|++++-..+|--.|+. +|.++ T Consensus 163 ~KP~p~----~~~~~~~~~~~~~~--~~l~iGD~~~~Di~~A~~~G~~~~~~~~~ 211 (247) T d2gfha1 163 EKPAPS----IFYHCCDLLGVQPG--DCVMVGDTLETDIQGGLNAGLKATVWINK 211 (247) T ss_dssp CTTCHH----HHHHHHHHHTCCGG--GEEEEESCTTTHHHHHHHTTCSEEEEECT T ss_pred CHHHHH----HHHHHHHHHHCCHH--HCCEECCCHHHHHHHHHHCCCEEEEEECC T ss_conf 003332----47889999602877--52420357186799999839949999779 No 5 >d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Probab=84.03 E-value=0.34 Score=26.50 Aligned_cols=61 Identities=16% Similarity=0.139 Sum_probs=33.2 Q ss_pred HHHHHHHHHHHHHHCCCEEEECCCC-----CCCCCCCCH-------------HHHHHHCCCCCCEEEEECCCCCCCCCC Q ss_conf 9999999999998669589611675-----433322485-------------789874483440167641557887655 Q gi|254780757|r 13 FQNIILTLTQYWAQQGCTILQPYDM-----EVGAGTFHP-------------STTLRALGPLSWKAAYVQPSRRPLDGR 73 (307) Q Consensus 13 fq~ii~~L~~fW~~~GC~i~qpyd~-----e~GAgT~hp-------------~T~lr~lg~~pw~~aYvqPsrRP~DgR 73 (307) -..|+..+-+|+.++|.+=+++=-+ |-++-.|++ ....|.+-.--=++-.+-||.|--+++ T Consensus 18 Rs~i~~~iR~ff~~~gf~Ev~TP~l~~~~~e~~~~~f~~~~~~~~~~L~~Spel~k~ll~~g~~~if~i~~~FR~ee~~ 96 (304) T d1n9wa2 18 QAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGLFGVDYFEKRAYLAQSPQLYKQIMVGVFERVYEVAPVWRMEEHH 96 (304) T ss_dssp HHHHHHHHHHHHHHTTCEECCCC----------------------------CHHHHHHHHHHHSEEEEEEEC------- T ss_pred HHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCEECCCCCCCCHHCCCCHHHHHHHHHCCCCCCEEEHHHCCCCCCC T ss_conf 9999999999998889999879864788889978507876555301014538888887521335421014331245355 No 6 >d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=83.86 E-value=0.43 Score=25.84 Aligned_cols=59 Identities=15% Similarity=0.195 Sum_probs=40.4 Q ss_pred HHCCCCEEEEECCEEEH-----------HHHHHHHHCCCCC--------------CCCHHHHHHHHHHHHHHHCCCCCEE Q ss_conf 10123217688787414-----------7778998668257--------------7514567878999999986998211 Q gi|254780757|r 131 GAWGLGWECWCDGMEIS-----------QFTYFQQVCGIEC--------------SPISGEITYGLERLAMYVQNVNSVY 185 (307) Q Consensus 131 GAwGlGWEvwldGMEIt-----------QFTYFQQvGGi~c--------------~pv~~EiTYGLERiaMylQ~vdnvy 185 (307) ..+...+|+-++|+||. |-.-|..-|.-+- -|.++-+.-|+|||.|++-|.+||- T Consensus 260 ~~~a~rfeL~~~G~El~nG~~e~~d~~~~~~r~~~~~~~~~~~~~~~yl~al~~G~PP~~G~glGiDRL~m~l~~~~~Ir 339 (353) T d1eova2 260 PKYSNSYDFFMRGEEILSGAQRIHDHALLQERMKAHGLSPEDPGLKDYCDGFSYGCPPHAGGGIGLERVVMFYLDLKNIR 339 (353) T ss_dssp TTBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHTTCCTTSTTTHHHHHHHTTCCCCEEEEEEEHHHHHHHHTTCSSGG T ss_pred HHHHHCEEEEEECEEECCEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHCCCCHH T ss_conf 34343105555220871101145999999999998598845667999999967699997046558999999980899288 Q ss_pred EEEE Q ss_conf 3320 Q gi|254780757|r 186 DIVF 189 (307) Q Consensus 186 Dl~w 189 (307) |.+- T Consensus 340 dvi~ 343 (353) T d1eova2 340 RASL 343 (353) T ss_dssp GGCS T ss_pred HEEC T ss_conf 4467 No 7 >d1wvia_ c.108.1.14 (A:) Putative phosphatase SMU.1415c {Streptococcus mutans [TaxId: 1309]} Probab=83.05 E-value=0.88 Score=23.55 Aligned_cols=44 Identities=18% Similarity=0.273 Sum_probs=37.1 Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEE Q ss_conf 79833589999999998199962171798832888700110123217-688 Q gi|254780757|r 92 KPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWC 141 (307) Q Consensus 92 KPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vwl 141 (307) ||+|.- |..-++.+|++| ..+-+|-|+.++--.||--.|+- ||. T Consensus 180 KP~p~~----~~~al~~l~i~~--~~~~mIGDs~~~DI~gA~~aG~~si~V 224 (253) T d1wvia_ 180 KPEAVI----MNKALDRLGVKR--HEAIMVGDNYLTDITAGIKNDIATLLV 224 (253) T ss_dssp TTSHHH----HHHHHHHHTSCG--GGEEEEESCTTTTHHHHHHTTCEEEEE T ss_pred CCCCCC----CEEHHHHCCCCC--CCEEEECCCHHHHHHHHHHCCCCEEEE T ss_conf 677420----011001103454--516998278077799999879979998 No 8 >d2g80a1 c.108.1.22 (A:17-241) Protein UTR4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=77.08 E-value=1.2 Score=22.59 Aligned_cols=44 Identities=25% Similarity=0.353 Sum_probs=37.8 Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEEC Q ss_conf 79833589999999998199962171798832888700110123217-6887 Q gi|254780757|r 92 KPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWCD 142 (307) Q Consensus 92 KPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vwld 142 (307) ||+|+ .|...++.+|++| +++-||+|. .+--.||.-.|+. ||++ T Consensus 159 KP~p~----~f~~~~~~lg~~p--~e~l~VgD~-~~Dv~~A~~aG~~ti~v~ 203 (225) T d2g80a1 159 KTETQ----SYANILRDIGAKA--SEVLFLSDN-PLELDAAAGVGIATGLAS 203 (225) T ss_dssp TTCHH----HHHHHHHHHTCCG--GGEEEEESC-HHHHHHHHTTTCEEEEEC T ss_pred CCCHH----HHHHHHHHCCCCC--HHCEEECCC-HHHHHHHHHCCCEEEEEE T ss_conf 98816----7677887436681--243464477-888999998599899996 No 9 >d1x42a1 c.108.1.1 (A:1-230) Hypothetical protein PH0459 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Probab=76.73 E-value=2.1 Score=20.81 Aligned_cols=47 Identities=28% Similarity=0.422 Sum_probs=39.2 Q ss_pred EECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEEE-EEC Q ss_conf 75798335899999999981999621717988328887001101232176-887 Q gi|254780757|r 90 IIKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWEC-WCD 142 (307) Q Consensus 90 ilKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWEv-wld 142 (307) .-||+| ++|..-++.+|++|. ++-||+|+=++-..||--.||.. |.+ T Consensus 153 ~~KP~~----~~~~~~~~~l~~~p~--~~l~vgD~~~~Di~~A~~~G~~~v~v~ 200 (230) T d1x42a1 153 FFKPHP----RIFELALKKAGVKGE--EAVYVGDNPVKDCGGSKNLGMTSILLD 200 (230) T ss_dssp BCTTSH----HHHHHHHHHHTCCGG--GEEEEESCTTTTHHHHHTTTCEEEEEC T ss_pred CCCHHH----HHHHHHHHHHCCCCC--CCCEEECCCHHHHHHHHHCCCEEEEEC T ss_conf 322135----778877764066431--264562174867999998599899988 No 10 >d2c4na1 c.108.1.14 (A:1-250) NagD {Escherichia coli [TaxId: 562]} Probab=74.94 E-value=2.6 Score=20.18 Aligned_cols=49 Identities=20% Similarity=0.257 Sum_probs=37.9 Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEEEEE Q ss_conf 4557579833589999999998199962171798832888700110123217688 Q gi|254780757|r 87 FQVIIKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWECWC 141 (307) Q Consensus 87 fQVilKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWEvwl 141 (307) ..+.-||+|. .+..-++.+||+|. ++-||-|+.++--+||.-.||--.+ T Consensus 171 ~~~~~KP~p~----~~~~a~~~lgi~p~--e~v~IGD~~~~DI~~a~~aG~~til 219 (250) T d2c4na1 171 PFYVGKPSPW----IIRAALNKMQAHSE--ETVIVGDNLRTDILAGFQAGLETIL 219 (250) T ss_dssp CEECSTTSTH----HHHHHHHHHTCCGG--GEEEEESCTTTHHHHHHHTTCEEEE T ss_pred CHHCCCCHHH----HHHHHHHHHCCCCH--HEEEECCCHHHHHHHHHHCCCCEEE T ss_conf 0001342046----67666666327803--4578468727799999987998999 No 11 >d1yv9a1 c.108.1.14 (A:4-256) Putative hydrolase EF1188 {Enterococcus faecalis [TaxId: 1351]} Probab=74.68 E-value=1.9 Score=21.10 Aligned_cols=46 Identities=22% Similarity=0.341 Sum_probs=36.9 Q ss_pred EECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEEEEE Q ss_conf 7579833589999999998199962171798832888700110123217688 Q gi|254780757|r 90 IIKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWECWC 141 (307) Q Consensus 90 ilKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWEvwl 141 (307) .-||+|.-+ ..-++.+||+|. ++-+|.|++++--.||--.|+-..+ T Consensus 178 ~~KP~~~~~----~~~~~~~gi~~~--~~l~IGD~~~~DI~~a~~aG~~si~ 223 (253) T d1yv9a1 178 IGKPKAIIM----ERAIAHLGVEKE--QVIMVGDNYETDIQSGIQNGIDSLL 223 (253) T ss_dssp CSTTSHHHH----HHHHHHHCSCGG--GEEEEESCTTTHHHHHHHHTCEEEE T ss_pred ECCCCHHHH----HHHHHHHCCCCC--CEEEECCCHHHHHHHHHHCCCCEEE T ss_conf 134312678----789998488844--2378437827799999987998999 No 12 >d2b0ca1 c.108.1.2 (A:8-204) Putative phosphatase YihX {Escherichia coli [TaxId: 562]} Probab=74.05 E-value=2.8 Score=19.88 Aligned_cols=89 Identities=20% Similarity=0.275 Sum_probs=56.8 Q ss_pred HHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEE------ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEE Q ss_conf 8987448344016764155788765546677500114444557------5798335899999999981999621717988 Q gi|254780757|r 48 TTLRALGPLSWKAAYVQPSRRPLDGRYAENPNRLQHYYQFQVI------IKPNPLNLQNLYIESLKAVGIDPLIHDVRFV 121 (307) Q Consensus 48 T~lr~lg~~pw~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQVi------lKPsp~niq~lYl~SL~~iGid~~~hDIrFv 121 (307) .++..+-.+....+-+-.+-+...-+.-+.-+-+.+|+-+-+. -||.|+ .|..-++.+|++| +++-|| T Consensus 91 ~l~~~l~~~~~~~~i~t~~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~Kp~~~----~~~~~~~~~~~~~--~~~l~v 164 (197) T d2b0ca1 91 AIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEIRDAADHIYLSQDLGMRKPEAR----IYQHVLQAEGFSP--SDTVFF 164 (197) T ss_dssp HHHHHHHHTTCEEEEEECCCCCTTSCCGGGCHHHHHHCSEEEEHHHHTCCTTCHH----HHHHHHHHHTCCG--GGEEEE T ss_pred HHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCCCHHHCCCEEECCCCCCCCCCHH----HHHHHHHHCCCCC--CEEEEE T ss_conf 8999998669828998074189999999874140221460011134554434648----9999998519998--818999 Q ss_pred ECCCCCCHHHHCCCCEE-EEECC Q ss_conf 32888700110123217-68878 Q gi|254780757|r 122 EDNWESPTLGAWGLGWE-CWCDG 143 (307) Q Consensus 122 eDnWEsPtLGAwGlGWE-vwldG 143 (307) +|+- +--.+|--+||. ||.+. T Consensus 165 gDs~-~di~~A~~aG~~ti~v~~ 186 (197) T d2b0ca1 165 DDNA-DNIEGANQLGITSILVKD 186 (197) T ss_dssp ESCH-HHHHHHHTTTCEEEECCS T ss_pred ECCH-HHHHHHHHCCCEEEEECC T ss_conf 6798-999999986998999999 No 13 >d2fdra1 c.108.1.6 (A:3-224) Hypothetical protein Atu0790 {Agrobacterium tumefaciens [TaxId: 358]} Probab=72.08 E-value=1.7 Score=21.49 Aligned_cols=45 Identities=27% Similarity=0.505 Sum_probs=36.5 Q ss_pred ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEEE-EEC Q ss_conf 5798335899999999981999621717988328887001101232176-887 Q gi|254780757|r 91 IKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWEC-WCD 142 (307) Q Consensus 91 lKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWEv-wld 142 (307) -||+| +.|+..++.+|++| .++-||+|+ ..--.+|-.+|+.+ |.. T Consensus 140 ~KP~~----~~~~~~~~~l~~~p--~~~l~vgDs-~~dv~aA~~aG~~~i~v~ 185 (222) T d2fdra1 140 VKPKP----DIFLHGAAQFGVSP--DRVVVVEDS-VHGIHGARAAGMRVIGFT 185 (222) T ss_dssp CTTSS----HHHHHHHHHHTCCG--GGEEEEESS-HHHHHHHHHTTCEEEEEC T ss_pred CCCCH----HHHHHHHHHHCCCC--CEEEEECCC-HHHHHHHHHCCCEEEEEC T ss_conf 44588----99987787508987--328997587-878999998499899983 No 14 >d1zrna_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Pseudomonas sp., strain YL [TaxId: 306]} Probab=71.46 E-value=1.5 Score=21.96 Aligned_cols=87 Identities=23% Similarity=0.374 Sum_probs=51.3 Q ss_pred HHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEE------EECCCCHHHHHHHHHHHHHCCCCCCCCCEEEE Q ss_conf 898744834401676415578876554667750011444455------75798335899999999981999621717988 Q gi|254780757|r 48 TTLRALGPLSWKAAYVQPSRRPLDGRYAENPNRLQHYYQFQV------IIKPNPLNLQNLYIESLKAVGIDPLIHDVRFV 121 (307) Q Consensus 48 T~lr~lg~~pw~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQV------ilKPsp~niq~lYl~SL~~iGid~~~hDIrFv 121 (307) .+++.+.....+++-+--+-+..=-...++ ..+.+|+-+.+ .-||+| +.|...++.+|++|. ++-|| T Consensus 100 ~~l~~l~~~~~~~~i~tn~~~~~~~~~~~~-~~~~~~fd~~~~s~~~~~~KP~p----~~~~~~~~~~g~~p~--e~l~V 172 (220) T d1zrna_ 100 DSLRELKRRGLKLAILSNGSPQSIDAVVSH-AGLRDGFDHLLSVDPVQVYKPDN----RVYELAEQALGLDRS--AILFV 172 (220) T ss_dssp HHHHHHHHTTCEEEEEESSCHHHHHHHHHH-TTCGGGCSEEEESGGGTCCTTSH----HHHHHHHHHHTSCGG--GEEEE T ss_pred HHHHHHHHCCCEEEEECCHHHHHHHHHHHH-CCCCCCCCCEEEEEEEECCCCHH----HHHHHHHHHHCCCCC--EEEEE T ss_conf 899988751785776421179999998741-14455321002221000145077----889999998177871--48998 Q ss_pred ECCCCCCHHHHCCCCEE-EEEC Q ss_conf 32888700110123217-6887 Q gi|254780757|r 122 EDNWESPTLGAWGLGWE-CWCD 142 (307) Q Consensus 122 eDnWEsPtLGAwGlGWE-vwld 142 (307) .|+. +--.||--.||. ||.+ T Consensus 173 gD~~-~Di~~A~~aG~~~v~v~ 193 (220) T d1zrna_ 173 ASNA-WDATGARYFGFPTCWIN 193 (220) T ss_dssp ESCH-HHHHHHHHHTCCEEEEC T ss_pred ECCH-HHHHHHHHCCCEEEEEC T ss_conf 0483-76999998699799981 No 15 >d1zd3a1 c.108.1.2 (A:2-224) Epoxide hydrolase, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Probab=70.20 E-value=1.7 Score=21.54 Aligned_cols=96 Identities=18% Similarity=0.220 Sum_probs=57.6 Q ss_pred CCCCCHH--HHHHHCCCCCCEEEEECCCCCCCCCCCCC-CCC--CCCEEEEEEEE------ECCCCHHHHHHHHHHHHHC Q ss_conf 3224857--89874483440167641557887655466-775--00114444557------5798335899999999981 Q gi|254780757|r 41 AGTFHPS--TTLRALGPLSWKAAYVQPSRRPLDGRYAE-NPN--RLQHYYQFQVI------IKPNPLNLQNLYIESLKAV 109 (307) Q Consensus 41 AgT~hp~--T~lr~lg~~pw~~aYvqPsrRP~DgRYGe-NPN--Rlq~y~QfQVi------lKPsp~niq~lYl~SL~~i 109 (307) .....|. -+|..|..+-++++-+--+-+....+.-. .+. -+..|+.+-+. -||+|+ +|..-++.+ T Consensus 97 ~~~~~~~~~~~l~~L~~~~~~~~i~Tn~~~~~~~~~~~~~~~~~~~~~~fd~i~~s~~~~~~KP~~~----~~~~~~~~~ 172 (225) T d1zd3a1 97 ARKINRPMLQAALMLRKKGFTTAILTNTWLDDRAERDGLAQLMCELKMHFDFLIESCQVGMVKPEPQ----IYKFLLDTL 172 (225) T ss_dssp HCEECHHHHHHHHHHHHTTCEEEEEECCCCCCSTTHHHHHHHHHHHHTTSSEEEEHHHHTCCTTCHH----HHHHHHHHH T ss_pred CCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCEEEECCCCCCCHHHHH----HHHHHHHHC T ss_conf 0778801999999998634863345434124089999987652573866638995122334304778----888776301 Q ss_pred CCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEECC Q ss_conf 99962171798832888700110123217-68878 Q gi|254780757|r 110 GIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWCDG 143 (307) Q Consensus 110 Gid~~~hDIrFveDnWEsPtLGAwGlGWE-vwldG 143 (307) |++|. ++-||+|+ ++--.+|--+||. ||.+. T Consensus 173 ~~~p~--e~l~VgD~-~~Di~~A~~~G~~ti~v~~ 204 (225) T d1zd3a1 173 KASPS--EVVFLDDI-GANLKPARDLGMVTILVQD 204 (225) T ss_dssp TCCGG--GEEEEESC-HHHHHHHHHTTCEEEECSS T ss_pred CCCCC--CEEEEECC-HHHHHHHHHCCCEEEEECC T ss_conf 56865--10588168-8879999986998999898 No 16 >d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} Probab=70.10 E-value=3.1 Score=19.62 Aligned_cols=111 Identities=17% Similarity=0.215 Sum_probs=68.8 Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEE-----EEECCCCHHHHHH-------HHHHHHHCCCCCCCCCEEEEE Q ss_conf 3440167641557887655466775001144445-----5757983358999-------999999819996217179883 Q gi|254780757|r 55 PLSWKAAYVQPSRRPLDGRYAENPNRLQHYYQFQ-----VIIKPNPLNLQNL-------YIESLKAVGIDPLIHDVRFVE 122 (307) Q Consensus 55 ~~pw~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQ-----VilKPsp~niq~l-------Yl~SL~~iGid~~~hDIrFve 122 (307) .-|-+.+=+-||.|-..|.||....-|.+-+||. ++..++|++.-+. .-+=++.|||. .|.| T Consensus 133 ~LPlr~~~~s~cfR~Eag~~g~~trGL~RvhQF~kvE~~~~~~~~~e~s~~~~~~~~~~~~~~~~~L~lp-----yrvv- 206 (311) T d1seta2 133 ALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELP-----YRLV- 206 (311) T ss_dssp GCSEEEEEEEEEECCCCSCTTSSCSTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCC-----EEEE- T ss_pred HCCCEEEEECCCCHHHHCCCCCCCHHHHHHCCCCHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHCCC-----CHHC- T ss_conf 0450577633531132113454312000100332312201202443110238999999999987761786-----0010- Q ss_pred CCCCCCHHHHCC---CCEEEEECC----EEE---HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEE Q ss_conf 288870011012---321768878----741---4777899866825775145678789999999869982113320 Q gi|254780757|r 123 DNWESPTLGAWG---LGWECWCDG----MEI---SQFTYFQQVCGIECSPISGEITYGLERLAMYVQNVNSVYDIVF 189 (307) Q Consensus 123 DnWEsPtLGAwG---lGWEvwldG----MEI---tQFTYFQQvGGi~c~pv~~EiTYGLERiaMylQ~vdnvyDl~w 189 (307) +..+--||++. .--|+|..| .|| +++|=|| -.|+-+-.++.|+-....| T Consensus 207 -~~~~~dl~~~a~~~~diE~w~P~~~~y~Ev~S~sn~~d~q-----------------srRl~i~y~~~dg~~~~~h 265 (311) T d1seta2 207 -EVATGDMGPGKWRQVDIEVYLPSEGRYRETHSCSALLDWQ-----------------ARRANLRYRDPEGRVRYAY 265 (311) T ss_dssp -ECCTTTSCTTCSEEEEEEEEEGGGTEEEEEEEEEECTTHH-----------------HHHHTCEEECTTSCEEECE T ss_pred -CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEECCHHH-----------------HHHCCCEEECCCCCEEEEE T ss_conf -3367787467776667888675069751346714004477-----------------7652658978999888679 No 17 >d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]} Probab=67.60 E-value=0.7 Score=24.25 Aligned_cols=129 Identities=20% Similarity=0.213 Sum_probs=66.4 Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEECC---CCHHHHHHHHHHHHHCCCCCCCCCEEEEECCC--CC Q ss_conf 48344016764155788765546677500114444557579---83358999999999819996217179883288--87 Q gi|254780757|r 53 LGPLSWKAAYVQPSRRPLDGRYAENPNRLQHYYQFQVIIKP---NPLNLQNLYIESLKAVGIDPLIHDVRFVEDNW--ES 127 (307) Q Consensus 53 lg~~pw~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQVilKP---sp~niq~lYl~SL~~iGid~~~hDIrFveDnW--Es 127 (307) -+..|+++.++--+.|..+ ...-.+-.+||.-.++-- +-.+....--.-++.++- .+..+||..+-- -. T Consensus 105 ~~~~p~~~~~~g~VyRrd~----iD~tH~p~FhQ~eg~~vd~~~~~~~Lk~~l~~~~~~~f~--~~~~~R~~p~yFPFTe 178 (266) T d1jjca_ 105 AHTPPFRIVVPGRVFRFEQ----TDATHEAVFHQLEGLVVGEGIAMAHLKGAIYELAQALFG--PDSKVRFQPVYFPFVE 178 (266) T ss_dssp HSCSSEEEEEEEEEECCSC----CCSSCCSEEEEEEEEEEETTCCHHHHHHHHHHHHHHHHC--TTCCEEEEECCCTTEE T ss_pred CCCCCCEEEECCCCEECCC----CCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCC--CCCEEEEECCCCCCCC T ss_conf 1499814884032140478----887526653021016524101078899999999998528--8837998425588756 Q ss_pred CH--HHH-C--CCCE-EEEECCEEEHHHHHHHHHC------CCCCCC---CHHHHHHHHHHHHHHHCCCCCEEEEEEC Q ss_conf 00--110-1--2321-7688787414777899866------825775---1456787899999998699821133206 Q gi|254780757|r 128 PT--LGA-W--GLGW-ECWCDGMEISQFTYFQQVC------GIECSP---ISGEITYGLERLAMYVQNVNSVYDIVFN 190 (307) Q Consensus 128 Pt--LGA-w--GlGW-EvwldGMEItQFTYFQQvG------Gi~c~p---v~~EiTYGLERiaMylQ~vdnvyDl~wn 190 (307) |+ +-+ | |.+| ||-=-||= .=..++.+| |++-.- ..--.--|||||||-+-++++|-++ |+ T Consensus 179 PS~Ev~v~~~~~~~WlEilG~Gmv--~p~vL~~~gi~~~~~g~~~~~~~~~g~AfGlGlERlAMl~~gI~DIR~f-~~ 253 (266) T d1jjca_ 179 PGAQFAVWWPEGGKWLELGGAGMV--HPKVFQAVDAYRERLGLPPAYRGVTGFAFGLGVERLAMLRYGIPDIRYF-FG 253 (266) T ss_dssp EEEEEEEEEGGGTEEEEEEEEEEE--CHHHHHHHHHHHHTTTCCCCCTTCEEEEEEEEHHHHHHHHHTCSCGGGT-TT T ss_pred CCCCEEEEEEECCCCCEEEEECCC--CHHHHHHCCCCHHHCCCCCCCCCCEEEEEEECHHHHHHHHCCCCHHHHH-HC T ss_conf 876668898605776668740456--8899986388656516885456776999863399999998299858877-51 No 18 >d1zcza2 c.97.1.4 (A:158-452) AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC {Thermotoga maritima [TaxId: 2336]} Probab=67.58 E-value=2.1 Score=20.76 Aligned_cols=32 Identities=25% Similarity=0.392 Sum_probs=18.1 Q ss_pred CCCCCCCCCCCCEEE---EEEEEE---CCCCHHHHHHH Q ss_conf 655466775001144---445575---79833589999 Q gi|254780757|r 71 DGRYAENPNRLQHYY---QFQVII---KPNPLNLQNLY 102 (307) Q Consensus 71 DgRYGeNPNRlq~y~---QfQVil---KPsp~niq~lY 102 (307) +=||||||.---..| .|.+++ .||-.|+.|+. T Consensus 11 ~LRYGENPHQ~A~~y~~~~~~~~~~GK~lSynN~lD~~ 48 (295) T d1zcza2 11 QLRYGENPHEKAFVYGKPAFEILHEGKTISFNNILDAE 48 (295) T ss_dssp CCSCSSSTTSCEEEESCCSEEEECSSSCCCHHHHHHHH T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCHHHHH T ss_conf 87899896864442588716886269986721099999 No 19 >d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Probab=65.79 E-value=0.4 Score=26.02 Aligned_cols=171 Identities=15% Similarity=0.065 Sum_probs=83.9 Q ss_pred HHHHHHHHHHHHHCCCEEEE-----CCC---CCCCCCCC-----------------CHHHHHH-HCCCCCCEEEEECCCC Q ss_conf 99999999999866958961-----167---54333224-----------------8578987-4483440167641557 Q gi|254780757|r 14 QNIILTLTQYWAQQGCTILQ-----PYD---MEVGAGTF-----------------HPSTTLR-ALGPLSWKAAYVQPSR 67 (307) Q Consensus 14 q~ii~~L~~fW~~~GC~i~q-----pyd---~e~GAgT~-----------------hp~T~lr-~lg~~pw~~aYvqPsr 67 (307) ..||..+-+|+.++|-+-+. |-. ...|+++. .|.-.+. +|..--=++-.+-||. T Consensus 18 s~i~~~iR~ff~~~gf~EV~tPil~~~~~~~~~~~~~~~~~~~~~~~~~~~~yL~~SPel~lk~lla~g~~~Vf~I~~~F 97 (293) T d1nnha_ 18 TKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEGMEPAEVEIYGVKMRLTHSMILHKQLAIAMGLKKIFVLSPNI 97 (293) T ss_dssp HHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTCCCCCCCEEEETTEEEEECSCSHHHHHHHHHTTCCEEEEEEEEE T ss_pred HHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHCCCCCEEECHHH T ss_conf 99999999999988999975873456677777765567664653567896564466863647999972233210310233 Q ss_pred C--CCCCCCC-CCCCCCCEEEEEEEEEC-CCCHHHH------------------------------HHHHHHHHHCCCCC Q ss_conf 8--8765546-67750011444455757-9833589------------------------------99999999819996 Q gi|254780757|r 68 R--PLDGRYA-ENPNRLQHYYQFQVIIK-PNPLNLQ------------------------------NLYIESLKAVGIDP 113 (307) Q Consensus 68 R--P~DgRYG-eNPNRlq~y~QfQVilK-Psp~niq------------------------------~lYl~SL~~iGid~ 113 (307) | +.+++=+ .||- +.+.-.=+. -.-+++- --|.+.|+..|+|. T Consensus 98 R~E~~~s~t~RH~~E----FtmLE~e~~~~d~~d~m~~~e~li~~~~~~~~~~~~~~~~~~~~~~~~~~~eal~~~g~d~ 173 (293) T d1nnha_ 98 RLESRQKDDGRHAYE----FTQLDFEVERAKMEDIMRLIERLVYGLFRKAEEWTGREFPKTKRFEVFEYSEVLEEFGSDE 173 (293) T ss_dssp CCCCGGGCSSSCCSE----EEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCSSCEEEEHHHHHHHTSSHH T ss_pred HCCCCCCCCCCCCHH----HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCC T ss_conf 047556777756156----6511112332307889999999999999999987174566678433233876532367652 Q ss_pred C---CCCEEEEECCCCCCH------HHHCCCCEEEEECCEEEH-----------HHHHHHHHCCCCC------------- Q ss_conf 2---171798832888700------110123217688787414-----------7778998668257------------- Q gi|254780757|r 114 L---IHDVRFVEDNWESPT------LGAWGLGWECWCDGMEIS-----------QFTYFQQVCGIEC------------- 160 (307) Q Consensus 114 ~---~hDIrFveDnWEsPt------LGAwGlGWEvwldGMEIt-----------QFTYFQQvGGi~c------------- 160 (307) . +.+.-+.--||..+- -..+....++..+|+||. |--=|.+.|. +- T Consensus 174 ~~~~~~~~p~~~~~~p~~f~~~~~~~~~~~~~~~l~~~g~Elang~~el~d~~~~~~r~~~~gl-~~e~~~~yl~a~~~G 252 (293) T d1nnha_ 174 KASQEMEEPFWIINIPREFYDREVDGFWRNYDLILPYGYGEVASGGEREWEYEKIVAKIRKAGL-NEDSFRPYLEIAKAG 252 (293) T ss_dssp HHHHHCSSCEEEECCCCCTTBCEETTEECEEEEEETTTTEEEEEEEEBCCCHHHHHHHHHHTTC-CGGGGHHHHHHHHTT T ss_pred CCCCCCCCCEECCCCCHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHC T ss_conf 0011222113203421021024666434541357404574205521010679999999998599-989999999999809 Q ss_pred -CCCHHHHHHHHHHHHHHHCCCCCEEEEEE Q ss_conf -75145678789999999869982113320 Q gi|254780757|r 161 -SPISGEITYGLERLAMYVQNVNSVYDIVF 189 (307) Q Consensus 161 -~pv~~EiTYGLERiaMylQ~vdnvyDl~w 189 (307) -|.++-+.-|+|||.|++.|++||-|..- T Consensus 253 ~mPP~~G~glGiDRL~m~l~g~~~Irdv~~ 282 (293) T d1nnha_ 253 KLKPSAGAGIGVERLVRFIVGAKHIAEVQP 282 (293) T ss_dssp CCCCEEEEEEEHHHHHHHHHTCSSGGGGCS T ss_pred CCCCCCEEEEHHHHHHHHHHCCCCHHHEEC T ss_conf 999988676659999999938982885114 No 20 >d2go7a1 c.108.1.6 (A:3-206) Hypothetical protein SP2064 {Streptococcus pneumoniae [TaxId: 1313]} Probab=64.28 E-value=3.1 Score=19.62 Aligned_cols=44 Identities=16% Similarity=0.151 Sum_probs=35.9 Q ss_pred ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEEEEE Q ss_conf 579833589999999998199962171798832888700110123217688 Q gi|254780757|r 91 IKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWECWC 141 (307) Q Consensus 91 lKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWEvwl 141 (307) .||.| ++|..-++.+|++| +++-||+|+ .+--.+|-.+|+..++ T Consensus 136 ~Kp~~----~~~~~~~~~~~~~p--~~~l~VgD~-~~Di~~A~~~G~~~i~ 179 (204) T d2go7a1 136 RKPSP----EAATYLLDKYQLNS--DNTYYIGDR-TLDVEFAQNSGIQSIN 179 (204) T ss_dssp CTTSS----HHHHHHHHHHTCCG--GGEEEEESS-HHHHHHHHHHTCEEEE T ss_pred CCHHH----HHHHHHHHHHCCCC--CEEEEEECC-HHHHHHHHHCCCEEEE T ss_conf 20257----88899999829997--518999479-8999999986996999 No 21 >d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Probab=59.62 E-value=1.7 Score=21.46 Aligned_cols=117 Identities=8% Similarity=-0.005 Sum_probs=70.1 Q ss_pred HCCCCCCEEEEECCCCCCCCCCCCCCC----CCCCEEEEEEEEECCCCHHHHHH-------HHHHHHHCCCCCCCCCEEE Q ss_conf 448344016764155788765546677----50011444455757983358999-------9999998199962171798 Q gi|254780757|r 52 ALGPLSWKAAYVQPSRRPLDGRYAENP----NRLQHYYQFQVIIKPNPLNLQNL-------YIESLKAVGIDPLIHDVRF 120 (307) Q Consensus 52 ~lg~~pw~~aYvqPsrRP~DgRYGeNP----NRlq~y~QfQVilKPsp~niq~l-------Yl~SL~~iGid~~~hDIrF 120 (307) +-..=|.++|=+-+|.|+..+ |..| -|+....|.-..+==.|+++.+. -..=++.+||++. .+|+ T Consensus 134 ~~~~LPf~iaq~g~~fR~E~~--~~~~~~gl~RvReF~q~E~~~F~~pe~~~~~~~~~~~~~~~~~~~lGi~~~--~~~~ 209 (290) T d1g5ha2 134 VNRKLPFGLAQIGVCFHPVSN--SNQTPSSVTRVGEKTEASLVWFTPTRTSSQWLDFWLRHRLLWWRKFAMSPS--NFSS 209 (290) T ss_dssp TTTBSCEEEEEEEEEEEEEC-----------CEEEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTCSSGG--GEEE T ss_pred CCCCCCCEEEEECCCCCCCCC--CCCCCCCCCEEEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCHH--HEEE T ss_conf 247899379986443345555--677641330324768413578967750678999999999999997398866--6652 Q ss_pred EECCCCCCHHHHCCCCEEEEEC--C-----EEEHH--------------HHHHHHHCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 8328887001101232176887--8-----74147--------------77899866825775145678789999999 Q gi|254780757|r 121 VEDNWESPTLGAWGLGWECWCD--G-----MEISQ--------------FTYFQQVCGIECSPISGEITYGLERLAMY 177 (307) Q Consensus 121 veDnWEsPtLGAwGlGWEvwld--G-----MEItQ--------------FTYFQQvGGi~c~pv~~EiTYGLERiaMy 177 (307) .+..++.. .. .|++|.. . --+++ .+|+-+-|+-.--|+.+|.+.|+||+.+. T Consensus 210 ~~~~~~~a---~~--~~die~~~p~g~~Ei~g~~~r~D~dl~~~~~~~~l~y~~~d~~~k~vP~vIe~s~gldR~~lA 282 (290) T d1g5ha2 210 ADCQDELG---RK--GSKLYYSFPWGKEPIETLWNLGDQELLHTYPGNVSTIQGRDGRKNVVPCVLSVSGDVDLGTLA 282 (290) T ss_dssp EEEECTTS---CE--EEEEEEEETTEEEEEEEEEEEESHHHHHHSTTCGGGSCEEETTEEECCEEEEEEEEHHHHHHH T ss_pred CCCCHHHC---CC--CEEEEECCCCCEEEEEEECCCHHHHHHHCCCCCCCEEECCCCCEEEEEEEEECCCCHHHHHHH T ss_conf 24514441---00--105687289877998876388135066461026987884689945765898576526789999 No 22 >d1o08a_ c.108.1.6 (A:) beta-Phosphoglucomutase {Lactococcus lactis [TaxId: 1358]} Probab=57.60 E-value=5.1 Score=18.05 Aligned_cols=45 Identities=24% Similarity=0.350 Sum_probs=35.1 Q ss_pred ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEEC Q ss_conf 579833589999999998199962171798832888700110123217-6887 Q gi|254780757|r 91 IKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWCD 142 (307) Q Consensus 91 lKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vwld 142 (307) -||+| +.|..-|+.+|++| +++-||.|. .+--.+|--+|+. ||.+ T Consensus 144 ~KP~~----~~~~~~l~~~~i~~--~~~l~VgD~-~~di~~A~~aG~~~i~v~ 189 (221) T d1o08a_ 144 SKPAP----DIFIAAAHAVGVAP--SESIGLEDS-QAGIQAIKDSGALPIGVG 189 (221) T ss_dssp CTTST----HHHHHHHHHTTCCG--GGEEEEESS-HHHHHHHHHHTCEEEEES T ss_pred CCCCH----HHHHHHHHHCCCCC--CEEEEEECC-HHHHHHHHHCCCEEEEEC T ss_conf 23575----88888898739887--407999669-888999998699899999 No 23 >d1te2a_ c.108.1.6 (A:) Phosphatase YniC {Escherichia coli [TaxId: 562]} Probab=56.93 E-value=5.3 Score=17.89 Aligned_cols=44 Identities=20% Similarity=0.393 Sum_probs=35.0 Q ss_pred ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEEEEE Q ss_conf 579833589999999998199962171798832888700110123217688 Q gi|254780757|r 91 IKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWECWC 141 (307) Q Consensus 91 lKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWEvwl 141 (307) -||.|+ .|...++.+|++| .++-||+|+ ++-..+|-..|+.+.. T Consensus 143 ~Kp~~~----~~~~~~~~l~~~~--~~~l~igD~-~~di~aA~~~G~~~i~ 186 (218) T d1te2a_ 143 SKPHPQ----VYLDCAAKLGVDP--LTCVALEDS-VNGMIASKAARMRSIV 186 (218) T ss_dssp CTTSTH----HHHHHHHHHTSCG--GGEEEEESS-HHHHHHHHHTTCEEEE T ss_pred CHHHHH----HHHHHHHHCCCCC--HHCEEEEEC-HHHHHHHHHCCCEEEE T ss_conf 014578----9999999729995--130899609-8999999983997999 No 24 >d1cr6a1 c.108.1.2 (A:4-225) Epoxide hydrolase, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Probab=56.88 E-value=5.9 Score=17.59 Aligned_cols=88 Identities=20% Similarity=0.234 Sum_probs=56.7 Q ss_pred HHHHHCCCCCCEEEEECCCCCCCCCCCCC---CCCCCCEEEEEEEE------ECCCCHHHHHHHHHHHHHCCCCCCCCCE Q ss_conf 89874483440167641557887655466---77500114444557------5798335899999999981999621717 Q gi|254780757|r 48 TTLRALGPLSWKAAYVQPSRRPLDGRYAE---NPNRLQHYYQFQVI------IKPNPLNLQNLYIESLKAVGIDPLIHDV 118 (307) Q Consensus 48 T~lr~lg~~pw~~aYvqPsrRP~DgRYGe---NPNRlq~y~QfQVi------lKPsp~niq~lYl~SL~~iGid~~~hDI 118 (307) .+|..|-....+++-+--+.++..-++.. .-.-+.+|+.+.+. -||+|+ +|..-++.+|++|. ++ T Consensus 104 ~~L~~L~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~l~~~fd~i~~s~~~~~~KP~p~----~~~~~~~~~~v~p~--~~ 177 (222) T d1cr6a1 104 QAAIALKKKGFTTCIVTNNWLDDGDKRDSLAQMMCELSQHFDFLIESCQVGMIKPEPQ----IYNFLLDTLKAKPN--EV 177 (222) T ss_dssp HHHHHHHHTTCEEEEEECCCCCCSSSHHHHHHHHHHHGGGCSEEEEHHHHSCCTTCHH----HHHHHHHHHTSCTT--SE T ss_pred HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCHHHHHCEEEEHHHCCCCCCCHH----HHHHHHHHHCCCCC--EE T ss_conf 9999998659945775201111189999999874680755111000544137799827----77788887289863--28 Q ss_pred EEEECCCCCCHHHHCCCCEE-EEEC Q ss_conf 98832888700110123217-6887 Q gi|254780757|r 119 RFVEDNWESPTLGAWGLGWE-CWCD 142 (307) Q Consensus 119 rFveDnWEsPtLGAwGlGWE-vwld 142 (307) -||.|+ ++-..||-..||- ||.+ T Consensus 178 l~IgD~-~~Di~~A~~aG~~ti~V~ 201 (222) T d1cr6a1 178 VFLDDF-GSNLKPARDMGMVTILVH 201 (222) T ss_dssp EEEESS-STTTHHHHHHTCEEEECC T ss_pred EEEECC-HHHHHHHHHCCCEEEEEC T ss_conf 999779-887999998599899989 No 25 >d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Probab=54.66 E-value=0.8 Score=23.83 Aligned_cols=60 Identities=12% Similarity=0.008 Sum_probs=35.2 Q ss_pred HHHHHHHHHHHHHCCCEEEEC-----CCCCCCCCCC---------------CHHHHHHH-CCCCCCEEEEECCCCCCCCC Q ss_conf 999999999998669589611-----6754333224---------------85789874-48344016764155788765 Q gi|254780757|r 14 QNIILTLTQYWAQQGCTILQP-----YDMEVGAGTF---------------HPSTTLRA-LGPLSWKAAYVQPSRRPLDG 72 (307) Q Consensus 14 q~ii~~L~~fW~~~GC~i~qp-----yd~e~GAgT~---------------hp~T~lr~-lg~~pw~~aYvqPsrRP~Dg 72 (307) ..|+..+-+|..++|.+=.++ .+.|-++..+ .|.-.++. +-.---++-.+-||.|.... T Consensus 36 s~i~~~iR~ff~~~gFlEV~TPiL~~~~~~g~~~~~~~~~~~~~~~~~L~~Spel~lk~ll~~g~~~Vf~i~~~FR~E~~ 115 (346) T d1c0aa3 36 AKITSLVRRFMDDHGFLDIETPMLTKATPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDL 115 (346) T ss_dssp HHHHHHHHHHHHHTTCEECCCCSSBCCCSSSSCCCEEECSSSTTCEEECCSCSHHHHHHHHHTTCCEEEEEEEEECCCCC T ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCC T ss_conf 99999999999988989987985477787645444212113799630677187999999863488854897124021236 Q ss_pred C Q ss_conf 5 Q gi|254780757|r 73 R 73 (307) Q Consensus 73 R 73 (307) + T Consensus 116 ~ 116 (346) T d1c0aa3 116 R 116 (346) T ss_dssp B T ss_pred C T ss_conf 8 No 26 >d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} Probab=54.22 E-value=0.79 Score=23.90 Aligned_cols=74 Identities=11% Similarity=0.108 Sum_probs=42.8 Q ss_pred HHHHHHHHHHHHHCCCEEEEC-----CCCCCCCCCC---------------CHHHHHH-HCCCCCCEEEEECCCCCCCCC Q ss_conf 999999999998669589611-----6754333224---------------8578987-448344016764155788765 Q gi|254780757|r 14 QNIILTLTQYWAQQGCTILQP-----YDMEVGAGTF---------------HPSTTLR-ALGPLSWKAAYVQPSRRPLDG 72 (307) Q Consensus 14 q~ii~~L~~fW~~~GC~i~qp-----yd~e~GAgT~---------------hp~T~lr-~lg~~pw~~aYvqPsrRP~Dg 72 (307) ..|+..+.+|+.++|.+=+++ .+.+-+|..| .|.-++. ++-.--=++-.+-||.|--+. T Consensus 27 s~i~~~iR~ff~~~gFiEV~TPil~~~~~~~~~~~f~~~~~~~~~~~yL~~Spql~~k~~l~~g~~~vf~i~p~FR~E~~ 106 (342) T d1e1oa2 27 SKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHHNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGI 106 (342) T ss_dssp HHHHHHHHHHHHTTTCEECCCCSEESSCCSSCCCCCEEEETTTTEEEEECSCSHHHHHHHHHHTCCEEEEEEEEECCCCC T ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCC T ss_conf 99999999999888899998987643279878864231466777512002326799898766224621342000245543 Q ss_pred CCCCCCCCCCEEEEEEEEE Q ss_conf 5466775001144445575 Q gi|254780757|r 73 RYAENPNRLQHYYQFQVII 91 (307) Q Consensus 73 RYGeNPNRlq~y~QfQVil 91 (307) .+-++--++|+-+=+ T Consensus 107 ----~~rHl~EFtmlE~e~ 121 (342) T d1e1oa2 107 ----SVRHNPEFTMMELYM 121 (342) T ss_dssp ----CC-CCSEEEEEEEEE T ss_pred ----CCCCHHHHHHHHHHH T ss_conf ----111107888788998 No 27 >d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Probab=53.82 E-value=0.84 Score=23.68 Aligned_cols=173 Identities=18% Similarity=0.240 Sum_probs=86.5 Q ss_pred HHHHHHHHHHHHHCCCEEEEC-----CCCCCCCC---------------CCCHHHHHHHC-CCCCCEEEEECCCCCCCCC Q ss_conf 999999999998669589611-----67543332---------------24857898744-8344016764155788765 Q gi|254780757|r 14 QNIILTLTQYWAQQGCTILQP-----YDMEVGAG---------------TFHPSTTLRAL-GPLSWKAAYVQPSRRPLDG 72 (307) Q Consensus 14 q~ii~~L~~fW~~~GC~i~qp-----yd~e~GAg---------------T~hp~T~lr~l-g~~pw~~aYvqPsrRP~Dg 72 (307) ..++..+.+|+.++|++=+++ .+.|-++. +-.|.-.+..| -.--=++--+-||.|-... T Consensus 44 s~i~~~iR~ff~~~gfiEV~TP~L~~~~~eg~~~~~~~~~~~~~~~~yL~~Spel~lk~ll~~g~~~Vf~i~~~FRaE~~ 123 (356) T d1l0wa3 44 HRVIKAIWDFLDREGFVQVETPFLTKSTPEGARDFLVPYRHEPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFRDEDL 123 (356) T ss_dssp HHHHHHHHHHHHHTTCEECCCCSSBCCCSSSSCCCEEECTTSTTEEEECCSCSHHHHHHHHHTTCSEEEEEEEEECCCCC T ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCC T ss_conf 99999999999888989998981246777644320022211320111777285677777523236867998212352226 Q ss_pred CCCCCCCCCCEEEEEEEEECC-CCHHH----HHH---------------------HHHHHHHCCCC---CCCCCEEEE-- Q ss_conf 546677500114444557579-83358----999---------------------99999981999---621717988-- Q gi|254780757|r 73 RYAENPNRLQHYYQFQVIIKP-NPLNL----QNL---------------------YIESLKAVGID---PLIHDVRFV-- 121 (307) Q Consensus 73 RYGeNPNRlq~y~QfQVilKP-sp~ni----q~l---------------------Yl~SL~~iGid---~~~hDIrFv-- 121 (307) +..++--+++.-.-..= +-+++ .+| |-+....++.+ ....+++|. T Consensus 124 ----~t~H~~EFtmLE~e~~~~~~~~~m~~~E~li~~v~~~~~~~~~~~~f~r~~~~~a~~~~~~~~~~l~~~~~~~~~~ 199 (356) T d1l0wa3 124 ----RADRQPDFTQLDLEMSFVEVEDVLELNERLMAHVFREALGVELPLPFPRLSYEEAMERYGSDKPDLRREGFRFLWV 199 (356) T ss_dssp ----CSSCCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHTCCCCCSSCCEEEHHHHHHHHSSSSCCCSCCSCCEEEE T ss_pred ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHC T ss_conf ----8754045668877666788878999999999999999728777789775117766778704747677775665420 Q ss_pred EC------CCCCCHH-----------------------HHCCCCEEEEECCEEEH-----------HHHHHHHHCCCC-- Q ss_conf 32------8887001-----------------------10123217688787414-----------777899866825-- Q gi|254780757|r 122 ED------NWESPTL-----------------------GAWGLGWECWCDGMEIS-----------QFTYFQQVCGIE-- 159 (307) Q Consensus 122 eD------nWEsPtL-----------------------GAwGlGWEvwldGMEIt-----------QFTYFQQvGGi~-- 159 (307) .| +.+.+.+ ......+|+-++|+||. |-.-|+..|--+ T Consensus 200 ~d~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~a~~FdL~~~G~ElanG~~r~~d~~~~~~r~~~~~~~~~~ 279 (356) T d1l0wa3 200 VDFPLLEWDEEEEAWTYMHHPFTSPHPEDLPLLEKDPGRVRALAYDLVLNGVEVGGGSIRIHDPRLQARVFRLLGIGEEE 279 (356) T ss_dssp ECCBSBCCCTTTSCCCBSSCTTBCBCSTTTTHHHHCGGGCBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHTCCTTT T ss_pred CCCCCCCCCCHHCCEEEEECCCCCCCHHHHCHHHCCCCCCEEEEEECCCCCEEEECCEEEECCHHHHHHHHHHHCCCCHH T ss_conf 36653113110012233437743687665100103888620212302338788621078717489999999997678323 Q ss_pred --------------CCCCHHHHHHHHHHHHHHHCCCCCEEEEEEC Q ss_conf --------------7751456787899999998699821133206 Q gi|254780757|r 160 --------------CSPISGEITYGLERLAMYVQNVNSVYDIVFN 190 (307) Q Consensus 160 --------------c~pv~~EiTYGLERiaMylQ~vdnvyDl~wn 190 (307) =-|.++-+.-|+|||.|++-|.+||-|.+.= T Consensus 280 ~~~~~~~yl~a~~~G~PP~~G~glGldRLlm~l~g~~~Irdvi~F 324 (356) T d1l0wa3 280 QREKFGFFLEALEYGAPPHGGIAWGLDRLLALMTGSPSIREVIAF 324 (356) T ss_dssp HHHHTHHHHHHTTBTCCCEEEEEEEHHHHHHHHHTCSSGGGGSSS T ss_pred HHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHCCCCCHHHEECC T ss_conf 577899999996679899623777099999998099958853468 No 28 >d1zs9a1 c.108.1.22 (A:4-256) E-1 enzyme {Human(Homo sapiens) [TaxId: 9606]} Probab=49.80 E-value=7.5 Score=16.81 Aligned_cols=88 Identities=9% Similarity=0.017 Sum_probs=53.1 Q ss_pred HHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEE-------EEECCCCHHHHHHHHHHHHHCCCCCCCCCEE Q ss_conf 789874483440167641557887655466775001144445-------5757983358999999999819996217179 Q gi|254780757|r 47 STTLRALGPLSWKAAYVQPSRRPLDGRYAENPNRLQHYYQFQ-------VIIKPNPLNLQNLYIESLKAVGIDPLIHDVR 119 (307) Q Consensus 47 ~T~lr~lg~~pw~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQ-------VilKPsp~niq~lYl~SL~~iGid~~~hDIr 119 (307) ..+|+.|..+-.+++.+--+-++.-- .-..-..+..+.++- ...||.| +.|+.-++.+|++| ..+- T Consensus 133 ~e~l~~L~~~g~~l~i~Tn~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~KP~p----~~~~~~~~~~~~~p--~~~l 205 (253) T d1zs9a1 133 VPAVRKWREAGMKVYIYSSGSVEAQK-LLFGHSTEGDILELVDGHFDTKIGHKVES----ESYRKIADSIGCST--NNIL 205 (253) T ss_dssp HHHHHHHHHTTCEEEEECSSCHHHHH-HHHHTBTTBCCGGGCSEEECGGGCCTTCH----HHHHHHHHHHTSCG--GGEE T ss_pred HHHHHHHHHCCCCEEECCCCCHHHHH-HHHHHCCCCHHHHHCCEEECCCCCCCCCC----HHHHHHHHHHCCCC--CCEE T ss_conf 99999986424754445898488999-99997284043320233302453357780----88899999948996--7489 Q ss_pred EEECCCCCCHHHHCCCCE-EEEEC Q ss_conf 883288870011012321-76887 Q gi|254780757|r 120 FVEDNWESPTLGAWGLGW-ECWCD 142 (307) Q Consensus 120 FveDnWEsPtLGAwGlGW-Evwld 142 (307) ||+|+ .+--.||--.|+ -||++ T Consensus 206 ~vgD~-~~dv~aA~~aG~~ti~v~ 228 (253) T d1zs9a1 206 FLTDV-TREASAAEEADVHVAVVV 228 (253) T ss_dssp EEESC-HHHHHHHHHTTCEEEEEC T ss_pred EEECC-HHHHHHHHHCCCEEEEEE T ss_conf 99479-999999998599799996 No 29 >d2hdoa1 c.108.1.6 (A:1-207) Phosphoglycolate phosphatase {Lactobacillus plantarum [TaxId: 1590]} Probab=44.11 E-value=9.1 Score=16.21 Aligned_cols=44 Identities=25% Similarity=0.372 Sum_probs=33.6 Q ss_pred ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEEEEE Q ss_conf 579833589999999998199962171798832888700110123217688 Q gi|254780757|r 91 IKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWECWC 141 (307) Q Consensus 91 lKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWEvwl 141 (307) -||.|+ +|..-++.+|++| .++-||+|. ++-..+|--.|..+.+ T Consensus 136 ~KP~p~----~~~~~~~~~~~~~--~~~l~VgDs-~~Di~~a~~aG~~~i~ 179 (207) T d2hdoa1 136 RKPDPL----PLLTALEKVNVAP--QNALFIGDS-VSDEQTAQAANVDFGL 179 (207) T ss_dssp CTTSSH----HHHHHHHHTTCCG--GGEEEEESS-HHHHHHHHHHTCEEEE T ss_pred CHHHHH----HHCCCCCCEEEEC--CCEEEECCC-HHHHHHHHHCCCEEEE T ss_conf 103444----3002342104511--340685477-8789999984992999 No 30 >d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Probab=43.93 E-value=1.8 Score=21.35 Aligned_cols=58 Identities=12% Similarity=0.181 Sum_probs=33.8 Q ss_pred HHHHHHHHHHHHHCCCEEE-----ECCCCCCCCCCCC-------------HHHHHH-HCCCCCCEEEEECCCCCCCC Q ss_conf 9999999999986695896-----1167543332248-------------578987-44834401676415578876 Q gi|254780757|r 14 QNIILTLTQYWAQQGCTIL-----QPYDMEVGAGTFH-------------PSTTLR-ALGPLSWKAAYVQPSRRPLD 71 (307) Q Consensus 14 q~ii~~L~~fW~~~GC~i~-----qpyd~e~GAgT~h-------------p~T~lr-~lg~~pw~~aYvqPsrRP~D 71 (307) ..||..+.+|-.++|-+=+ ++.+.|-++-.|. |.-++. .|-.--=++-.+-||.|--+ T Consensus 38 s~i~~~iR~ff~~~gflEV~TPil~~~~~~~~~~~f~~~~~~~~~yL~~SpE~~lkrll~~g~~~if~i~~~FR~e~ 114 (335) T d1b8aa2 38 SSVFKAVRDFFHENGFIEIHTPKIIATATEGGTELFPMKYFEEDAFLAESPQLYKEIMMASGLDRVYEIAPIFRAEE 114 (335) T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESCCCSSSSSCCEEEETTEEEEECSCSHHHHHHGGGTTCCEEEEEEEEECCCS T ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC T ss_conf 99999999999988999987986576577213320121122344212368578777777640666878330235222 No 31 >d1vjra_ c.108.1.14 (A:) Hypothetical protein TM1742 {Thermotoga maritima [TaxId: 2336]} Probab=43.81 E-value=7.8 Score=16.68 Aligned_cols=45 Identities=20% Similarity=0.181 Sum_probs=35.5 Q ss_pred ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEE Q ss_conf 579833589999999998199962171798832888700110123217-688 Q gi|254780757|r 91 IKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWC 141 (307) Q Consensus 91 lKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vwl 141 (307) -||+|.-+. .-++.+|+++ +++-+|-|++++--.||--.||- ||. T Consensus 184 ~KP~p~~~~----~a~~~l~~~~--~~~lmVGD~~~~DI~ga~~aG~~si~V 229 (261) T d1vjra_ 184 GKPNPLVVD----VISEKFGVPK--ERMAMVGDRLYTDVKLGKNAGIVSILV 229 (261) T ss_dssp STTSTHHHH----HHHHHHTCCG--GGEEEEESCHHHHHHHHHHHTCEEEEE T ss_pred CCCCHHHHH----HHHHHHCCCC--HHCCEECCCHHHHHHHHHHCCCCEEEE T ss_conf 799578888----8876640472--211031687167899999879969998 No 32 >d1g8ma2 c.97.1.4 (A:201-593) AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC {Chicken (Gallus gallus) [TaxId: 9031]} Probab=37.15 E-value=11 Score=15.48 Aligned_cols=30 Identities=30% Similarity=0.548 Sum_probs=15.8 Q ss_pred CCCCCCCCC-CEEEE------EEEE-ECCCCHHHHHHH Q ss_conf 546677500-11444------4557-579833589999 Q gi|254780757|r 73 RYAENPNRL-QHYYQ------FQVI-IKPNPLNLQNLY 102 (307) Q Consensus 73 RYGeNPNRl-q~y~Q------fQVi-lKPsp~niq~lY 102 (307) ||||||.-- --||. ++++ =|+|-.|+.|+. T Consensus 8 RYGENPHQ~aA~~~~~~~~~~~~~l~gk~SyNN~lD~d 45 (393) T d1g8ma2 8 RYGMNPHQSPAQLYTTRPKLPLTVVNGSPGFINLCDAL 45 (393) T ss_dssp SCSSSTTSCCEEEECSSSSCSEEEEESCCCHHHHHHHH T ss_pred CCCCCCCCCCCEEECCCCCCHHHHHCCCCCHHHHHHHH T ss_conf 79768054113862168743168866870276798899 No 33 >d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} Probab=32.96 E-value=8 Score=16.59 Aligned_cols=126 Identities=13% Similarity=0.047 Sum_probs=77.9 Q ss_pred HHHHCCCCCCEEEEECCCCCCC-CCCCCCCCCCCCEEEEEEEEECCCCHHHH-------HHHHHHHHHCCCCCCCCCEEE Q ss_conf 9874483440167641557887-65546677500114444557579833589-------999999998199962171798 Q gi|254780757|r 49 TLRALGPLSWKAAYVQPSRRPL-DGRYAENPNRLQHYYQFQVIIKPNPLNLQ-------NLYIESLKAVGIDPLIHDVRF 120 (307) Q Consensus 49 ~lr~lg~~pw~~aYvqPsrRP~-DgRYGeNPNRlq~y~QfQVilKPsp~niq-------~lYl~SL~~iGid~~~hDIrF 120 (307) ..++-+.=|.++|=++-|.|.. -||.|- -|+-...|.-.-+==+|+.+. ++.+..+..+|+++. -+|| T Consensus 138 ~~~syk~LP~~~aqig~~fR~E~s~~~gl--~RvReFtq~D~~~F~~~~q~~~~~~~~~~~~~~~~~~~g~~~~--~lr~ 213 (331) T d1b76a2 138 LDATSRKLGFGIAQIGKAFRNEITPRNFI--FRVREFEQMEIEYFVRPGEDEYWHRYWVEERLKWWQEMGLSRE--NLVP 213 (331) T ss_dssp HHHHTCCSSEEEEEEEEEECCCSSCCTTT--TSCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHTTCCGG--GEEE T ss_pred HHCCCCCCCHHHHHCCCEECCCCCCCCCC--CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCH--HEEE T ss_conf 75354435603222052323665555443--3200311100342048752067999999999999998625622--1364 Q ss_pred EE-CCCCCCHHHHCCC--------CEEEEE---C-------------------------CEEEHHHHHHHHHCCCCCCCC Q ss_conf 83-2888700110123--------217688---7-------------------------874147778998668257751 Q gi|254780757|r 121 VE-DNWESPTLGAWGL--------GWECWC---D-------------------------GMEISQFTYFQQVCGIECSPI 163 (307) Q Consensus 121 ve-DnWEsPtLGAwGl--------GWEvwl---d-------------------------GMEItQFTYFQQvGGi~c~pv 163 (307) .. +.||...-+.... ||.-.. + -......+||...+|-.-.|+ T Consensus 214 ~~~~~~e~a~~~~~~~~~e~~~~~g~~e~eg~~y~~~~Dl~~~~~~~~~~~~~~~q~d~~~s~~~l~~~d~e~g~k~~P~ 293 (331) T d1b76a2 214 YQQPPESSAHYAKATVDILYRFPHGSLELEGIAQRTDFDLGSHTKDQEALGITARVLRNEHSTQRLAYRDPETGKWFVPY 293 (331) T ss_dssp EECCTTSSCTTEEEEEEEEEEETTEEEEEEEEEEECSHHHHHTCTTTTTTTCCSCCCCCSSCSSCCCEECSSSSCEECCE T ss_pred EEECCCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCEEEECE T ss_conf 21044301445689999974499760023122146554440012455543311355136776430479936799378266 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 456787899999998 Q gi|254780757|r 164 SGEITYGLERLAMYV 178 (307) Q Consensus 164 ~~EiTYGLERiaMyl 178 (307) .+|-.||+||+.+.+ T Consensus 294 vIe~S~GieR~~~ai 308 (331) T d1b76a2 294 VIEPSAGVDRGVLAL 308 (331) T ss_dssp EEEEEEEHHHHHHHH T ss_pred EEECCCCHHHHHHHH T ss_conf 997288753899999 No 34 >d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS) {Escherichia coli [TaxId: 562]} Probab=32.77 E-value=5.2 Score=17.99 Aligned_cols=60 Identities=12% Similarity=-0.030 Sum_probs=36.8 Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCC----------HHHHCCCCEEEEECCEEEHHHHHHHHHCCCCC Q ss_conf 3358999999999819996217179883288870----------01101232176887874147778998668257 Q gi|254780757|r 95 PLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESP----------TLGAWGLGWECWCDGMEISQFTYFQQVCGIEC 160 (307) Q Consensus 95 p~niq~lYl~SL~~iGid~~~hDIrFveDnWEsP----------tLGAwGlGWEvwldGMEItQFTYFQQvGGi~c 160 (307) -...-+.-+++|+-+||+....-++ .|. .|=+-|+-+.++|.-=|+.+.-=-++-.|.+| T Consensus 67 ~~~~~~~I~~dL~WLGl~wD~~~~~------QS~r~~~Y~~~~~~L~~~G~aY~C~cs~eel~~~r~~~~~~g~~~ 136 (331) T d1gtra2 67 DIEYVESIKNDVEWLGFHWSGNVRY------SSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNS 136 (331) T ss_dssp CHHHHHHHHHHHHHTTCCCSSSCEE------GGGGHHHHHHHHHHHHHTTSEEEECCCHHHHHHHTCCSSSCCCCC T ss_pred CCHHHHHHHHHHHHHHCCCCCCCEE------CCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCC T ss_conf 5557999999999975034666400------562999999999865336886446451999999775541169998 No 35 >d1v54f_ g.41.5.3 (F:) Cytochrome c oxidase Subunit F {Cow (Bos taurus) [TaxId: 9913]} Probab=26.88 E-value=13 Score=14.98 Aligned_cols=27 Identities=33% Similarity=0.493 Sum_probs=16.1 Q ss_pred CCHHHHHHHHHHHHHH--HCCCCCEEEEEE Q ss_conf 5145678789999999--869982113320 Q gi|254780757|r 162 PISGEITYGLERLAMY--VQNVNSVYDIVF 189 (307) Q Consensus 162 pv~~EiTYGLERiaMy--lQ~vdnvyDl~w 189 (307) |-..|..-||||.-|- ++|+| +||+.- T Consensus 7 ptd~EqATGlEr~ella~~~g~D-~fd~~~ 35 (98) T d1v54f_ 7 PTDEEQATGLEREVMLAARKGQD-PYNILA 35 (98) T ss_dssp CCHHHHCCHHHHHHHHHHHTTCC-TTCCSC T ss_pred CCHHHHHHHHHHHHHHHHHCCCC-HHHCCC T ss_conf 98678711288999999864998-233457 No 36 >d2fi1a1 c.108.1.3 (A:4-190) Putative hydrolase SP0805 {Streptococcus pneumoniae [TaxId: 1313]} Probab=25.38 E-value=18 Score=14.12 Aligned_cols=46 Identities=15% Similarity=0.125 Sum_probs=29.8 Q ss_pred ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEE-EEECCEE Q ss_conf 579833589999999998199962171798832888700110123217-6887874 Q gi|254780757|r 91 IKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWE-CWCDGME 145 (307) Q Consensus 91 lKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWE-vwldGME 145 (307) -||.|+. |..-++.+|+++ .-||+|. .+--.+|.-.|=. ||.++.+ T Consensus 133 ~KP~p~~----~~~~~~~~~~~~----~l~vgDs-~~Di~aA~~aG~~~i~v~~~~ 179 (187) T d2fi1a1 133 RKPNPES----MLYLREKYQISS----GLVIGDR-PIDIEAGQAAGLDTHLFTSIV 179 (187) T ss_dssp CTTSCHH----HHHHHHHTTCSS----EEEEESS-HHHHHHHHHTTCEEEECSCHH T ss_pred CCCCHHH----HHHHHHHCCCCC----EEEEECC-HHHHHHHHHCCCEEEEECCCC T ss_conf 6888999----999999849997----6999079-999999998599799999988 No 37 >d1u7la_ e.57.1.1 (A:) Vacuolar ATP synthase subunit C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=24.66 E-value=13 Score=15.05 Aligned_cols=20 Identities=15% Similarity=0.298 Sum_probs=10.8 Q ss_pred ECCCCHHHHHHHHHHHHHCC Q ss_conf 57983358999999999819 Q gi|254780757|r 91 IKPNPLNLQNLYIESLKAVG 110 (307) Q Consensus 91 lKPsp~niq~lYl~SL~~iG 110 (307) +=--|.+.++-++.+-+.+. T Consensus 191 lVvVPk~~~~dwl~~YEtL~ 210 (388) T d1u7la_ 191 LVAVPKSLKSDFEKSYETLS 210 (388) T ss_dssp EEEEEGGGHHHHHHHGGGSS T ss_pred EEEEECCCHHHHHHHHHHHC T ss_conf 99961531788999986325 No 38 >d1wdia_ e.53.1.1 (A:) Queuosine biosynthesis protein queA {Thermus thermophilus [TaxId: 274]} Probab=23.72 E-value=19 Score=13.91 Aligned_cols=25 Identities=28% Similarity=0.555 Sum_probs=14.5 Q ss_pred HHHHHCCCCCCEEEEECCCCCCCCCC Q ss_conf 89874483440167641557887655 Q gi|254780757|r 48 TTLRALGPLSWKAAYVQPSRRPLDGR 73 (307) Q Consensus 48 T~lr~lg~~pw~~aYvqPsrRP~DgR 73 (307) .+++.+++..|.+ .+.|++|..-|. T Consensus 82 lll~~~~~~~w~a-l~kp~kk~k~G~ 106 (344) T d1wdia_ 82 LLVRERSPGLWEA-LLGPARKAPPGT 106 (344) T ss_dssp EECBCC------C-CBCCCSCCCSCE T ss_pred EEECCCCCCEEEE-EECCCCCCCCCC T ss_conf 9831248970899-953367789998 No 39 >d2cyga1 c.1.8.3 (A:29-340) Plant beta-glucanases {Banana (Musa acuminata), 1,3-beta-glucanase [TaxId: 4641]} Probab=23.23 E-value=19 Score=13.84 Aligned_cols=15 Identities=27% Similarity=0.270 Sum_probs=6.9 Q ss_pred CHHHHHHHHHHHHHH Q ss_conf 017889999999999 Q gi|254780757|r 276 ISTTERQRYILRIRS 290 (307) Q Consensus 276 ISVTERq~YI~RIR~ 290 (307) -|+..-+.|+..++. T Consensus 248 as~~na~~y~~~l~~ 262 (312) T d2cyga1 248 ASTSNAQTYNQNLIR 262 (312) T ss_dssp SSHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHH T ss_conf 899999999999999 No 40 >d1prtb1 b.40.2.1 (B:90-199) Pertussis toxin S2/S3 subunits, C-terminal domain {Bordetella pertussis [TaxId: 520]} Probab=22.93 E-value=12 Score=15.36 Aligned_cols=57 Identities=21% Similarity=0.329 Sum_probs=39.5 Q ss_pred EECCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCEE-EEECCCCCCHHHHCCCC Q ss_conf 6415578876554667750011444455757983358999999999819996217179-88328887001101232 Q gi|254780757|r 62 YVQPSRRPLDGRYAENPNRLQHYYQFQVIIKPNPLNLQNLYIESLKAVGIDPLIHDVR-FVEDNWESPTLGAWGLG 136 (307) Q Consensus 62 YvqPsrRP~DgRYGeNPNRlq~y~QfQVilKPsp~niq~lYl~SL~~iGid~~~hDIr-FveDnWEsPtLGAwGlG 136 (307) -||.|-+|-+|||++--.+|- --|.-+..-|+-.+.|--+ =--|+.|-||.-+..|- T Consensus 41 vigAC~sPy~gry~~mY~~LR------------------r~Ly~iy~~Gl~vRVhVskeeqyydyedatf~tYalT 98 (110) T d1prtb1 41 VIGACTSPYDGKYWSMYSRLR------------------KMLYLIYVAGISVRVHVSKEEQYYDYEDATFETYALT 98 (110) T ss_dssp EEEEEECSSSSTTSTTHHHHH------------------HHHHHHHHHTCCEEEEEEEEEEECCSTTCSSCCEEEE T ss_pred EEHEECCCCCCCHHHHHHHHH------------------HHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCEEEE T ss_conf 000006854462366889999------------------9999999738558999765446541014775315564 No 41 >d1my7a_ b.1.18.1 (A:) p65 subunit of NF-kappa B (NFKB), dimerization domain {Human (Homo sapiens) [TaxId: 9606]} Probab=21.83 E-value=13 Score=15.11 Aligned_cols=18 Identities=28% Similarity=0.398 Sum_probs=9.8 Q ss_pred CCCCCCCCC--EEEEECCCC Q ss_conf 199962171--798832888 Q gi|254780757|r 109 VGIDPLIHD--VRFVEDNWE 126 (307) Q Consensus 109 iGid~~~hD--IrFveDnWE 126 (307) ||=+....| |||.|.+|| T Consensus 25 lc~kv~kddi~V~F~E~~WE 44 (107) T d1my7a_ 25 LCDKVQKEDIEVYFTGPGWE 44 (107) T ss_dssp EESCCCTTSCEEEEEETTEE T ss_pred EECCCCCCCCEEEEECCCCE T ss_conf 94543668879999635828 No 42 >d2ns0a1 a.4.5.76 (A:1-85) Hypothetical protein RHA1_ro06458 {Rhodococcus sp. RHA1 [TaxId: 101510]} Probab=21.59 E-value=17 Score=14.25 Aligned_cols=29 Identities=28% Similarity=0.623 Sum_probs=21.0 Q ss_pred CCC-CCCCHHHHHHHCCCCCCEEEEECCCCC Q ss_conf 333-224857898744834401676415578 Q gi|254780757|r 39 VGA-GTFHPSTTLRALGPLSWKAAYVQPSRR 68 (307) Q Consensus 39 ~GA-gT~hp~T~lr~lg~~pw~~aYvqPsrR 68 (307) -|. .|+.|.-.-|+|+|+.|+. +.+|.|+ T Consensus 19 R~~~~ticPsEvARal~~~~WR~-lM~~vR~ 48 (85) T d2ns0a1 19 RADSASICPSDVARAVAPDDWRP-LMEPVRE 48 (85) T ss_dssp SCTTCCBCHHHHHHHHCTTSCGG-GHHHHHH T ss_pred CCCCCCCCHHHHHHHHCCHHHHH-HHHHHHH T ss_conf 49989749899998868471688-7399999 No 43 >d1v29a_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase {Bacillus smithii [TaxId: 1479]} Probab=20.93 E-value=21 Score=13.52 Aligned_cols=49 Identities=20% Similarity=0.150 Sum_probs=39.2 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH----HH--HHHHHHHHHHHHHH Q ss_conf 382899999999987888387501788999999----99--99999999999854 Q gi|254780757|r 254 FPAYDQCIKASHIFNLLDARGVISTTERQRYIL----RI--RSLAKACGEAFLMT 302 (307) Q Consensus 254 lPAYD~~LKaSH~FNLLDARGaISVTERq~YI~----RI--R~Lak~~A~ayl~~ 302 (307) -|-=++-++.-.+--||-.+|.|+-.+-...|- || ++=||.+|+||++. T Consensus 10 ~~~s~~e~rv~ALe~LLieKGlit~~~id~~ie~~e~~vgP~nGArvVARAW~Dp 64 (203) T d1v29a_ 10 RPQSFWEARAKALESLLIEKRLLSSDAIERVIKHYEHELGPMNGAKVVAKAWTDP 64 (203) T ss_dssp CCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTTCCTHHHHHHHHHHTTCH T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCH T ss_conf 9965699999999999998699998999999999976349831789999883699 No 44 >d2f6ma1 a.2.17.1 (A:322-385) Vacuolar protein sorting-associated protein 23, VPS23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=20.26 E-value=22 Score=13.43 Aligned_cols=20 Identities=30% Similarity=0.506 Sum_probs=16.5 Q ss_pred HCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 38750178899999999999999 Q gi|254780757|r 272 ARGVISTTERQRYILRIRSLAKA 294 (307) Q Consensus 272 ARGaISVTERq~YI~RIR~Lak~ 294 (307) -||.|++. .|+..||.|||. T Consensus 29 ~~G~I~~d---~ylK~vR~LaRe 48 (64) T d2f6ma1 29 HRGTIPLD---TFVKQGRELARQ 48 (64) T ss_dssp HHTSSCHH---HHHHHHHHHHHH T ss_pred HCCCCCHH---HHHHHHHHHHHH T ss_conf 86976799---999999999999 Done!