RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780757|ref|YP_003065170.1| glycyl-tRNA synthetase subunit
alpha [Candidatus Liberibacter asiaticus str. psy62]
(307 letters)
>gnl|CDD|181790 PRK09348, glyQ, glycyl-tRNA synthetase subunit alpha; Validated.
Length = 283
Score = 602 bits (1555), Expect = e-173
Identities = 202/293 (68%), Positives = 234/293 (79%), Gaps = 14/293 (4%)
Query: 8 KNDLSFQNIILTLTQYWAQQGCTILQPYDMEVGAGTFHPSTTLRALGPLSWKAAYVQPSR 67
++FQ+IILTL YWA QGC ILQPYDMEVGAGTFHP+T LRALGP W AAYVQPSR
Sbjct: 1 SKKMTFQDIILTLQDYWADQGCVILQPYDMEVGAGTFHPATFLRALGPEPWNAAYVQPSR 60
Query: 68 RPLDGRYAENPNRLQHYYQFQVIIKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWES 127
RP DGRY ENPNRLQHYYQFQVI+KP+P N+Q LY+ SL+A+GIDPL HD+RFVEDNWES
Sbjct: 61 RPTDGRYGENPNRLQHYYQFQVILKPSPDNIQELYLGSLEALGIDPLEHDIRFVEDNWES 120
Query: 128 PTLGAWGLGWECWCDGMEISQFTYFQQVCGIECSPISGEITYGLERLAMYVQNVNSVYDI 187
PTLGAWGLGWE W DGME++QFTYFQQV GIEC P++GEITYGLERLAMY+Q V++VYD+
Sbjct: 121 PTLGAWGLGWEVWLDGMEVTQFTYFQQVGGIECKPVTGEITYGLERLAMYLQGVDNVYDL 180
Query: 188 VFNAIEGQNVLYGDIFAQSEQEYSRYNFEYANPEILHNHFIDSEKECLDLLKKGIPNEHH 247
V+N V YGD+F Q+E E S+YNFE+A+ E+L F D EKE LL+KG+P
Sbjct: 181 VWN----DGVTYGDVFLQNEVEQSKYNFEHADVEMLFKLFDDYEKEAKRLLEKGLP---- 232
Query: 248 RHHLCVFPAYDQCIKASHIFNLLDARGVISTTERQRYILRIRSLAKACGEAFL 300
PAYD +KASH FNLLDARG IS TERQRYILRIR+LA+A EA+L
Sbjct: 233 ------LPAYDYVLKASHTFNLLDARGAISVTERQRYILRIRNLARAVAEAYL 279
>gnl|CDD|184901 PRK14908, PRK14908, glycyl-tRNA synthetase; Provisional.
Length = 1000
Score = 463 bits (1194), Expect = e-131
Identities = 172/287 (59%), Positives = 206/287 (71%), Gaps = 14/287 (4%)
Query: 8 KNDLSFQNIILTLTQYWAQQGCTILQPYDMEVGAGTFHPSTTLRALGPLSWKAAYVQPSR 67
L+ Q+++L L +YW++QGC I Q YD+EVGAGTF+P+T LR LGP W+ AYV+PSR
Sbjct: 2 SQPLTMQDMLLALLRYWSEQGCIIHQGYDLEVGAGTFNPATFLRVLGPEPWRVAYVEPSR 61
Query: 68 RPLDGRYAENPNRLQHYYQFQVIIKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWES 127
RP DGRY +NPNRLQ Y QFQVI+KP P N Q LY+ESLKA+GID HD+RFV D+WE+
Sbjct: 62 RPDDGRYGQNPNRLQTYTQFQVILKPVPGNPQELYLESLKAIGIDLRDHDIRFVHDDWEN 121
Query: 128 PTLGAWGLGWECWCDGMEISQFTYFQQVCGIECSPISGEITYGLERLAMYVQNVNSVYDI 187
PT+GAWGLGWE W DGMEI+QFTYFQQ G PISGEITYG+ER+AMY+Q VN DI
Sbjct: 122 PTIGAWGLGWEVWLDGMEITQFTYFQQAGGKPLDPISGEITYGIERIAMYLQKVNHFKDI 181
Query: 188 VFNAIEGQNVLYGDIFAQSEQEYSRYNFEYANPEILHNHFIDSEKECLDLLKKGIPNEHH 247
+N + YG+IF Q+E E SRYNF+ AN E+ HF D E L LL G+P
Sbjct: 182 AWN----DGLTYGEIFQQAEYEMSRYNFDDANTEMWLKHFEDYAAEALRLLDAGLP---- 233
Query: 248 RHHLCVFPAYDQCIKASHIFNLLDARGVISTTERQRYILRIRSLAKA 294
PAYD +KASH FN+LDARG IS TER RYI RIR LA+A
Sbjct: 234 ------VPAYDFVLKASHAFNILDARGAISVTERTRYIARIRQLARA 274
>gnl|CDD|129483 TIGR00388, glyQ, glycyl-tRNA synthetase, tetrameric type, alpha
subunit. This tetrameric form of glycyl-tRNA synthetase
(2 alpha, 2 beta) is found in the majority of completed
eubacterial genomes, with the two genes fused in a few
species. A substantially different homodimeric form (not
recognized by this model) replaces this form in the
Archaea, animals, yeasts, and some eubacteria.
Length = 293
Score = 452 bits (1165), Expect = e-128
Identities = 181/289 (62%), Positives = 215/289 (74%), Gaps = 10/289 (3%)
Query: 12 SFQNIILTLTQYWAQQGCTILQPYDMEVGAGTFHPSTTLRALGPLSWKAAYVQPSRRPLD 71
+FQ +IL L +YWA QGC I+QPYDME GAGT HP T LR+LGP W AYV+PSRRP D
Sbjct: 2 TFQGLILKLQEYWANQGCLIVQPYDMEKGAGTMHPMTFLRSLGPEPWAVAYVEPSRRPTD 61
Query: 72 GRYAENPNRLQHYYQFQVIIKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLG 131
GRY ENPNRLQHYYQFQV+IKP+P N+Q LY++SL+A+GIDP HD+RFVEDNWE+PTLG
Sbjct: 62 GRYGENPNRLQHYYQFQVVIKPSPDNIQELYLDSLRALGIDPTEHDIRFVEDNWENPTLG 121
Query: 132 AWGLGWECWCDGMEISQFTYFQQVCGIECSPISGEITYGLERLAMYVQNVNSVYDIVFNA 191
AWGLGWE W DGME++QFTYFQQV G+EC P+S EITYGLERLAMY+Q V +VYD+ ++
Sbjct: 122 AWGLGWEVWLDGMEVTQFTYFQQVGGLECKPVSVEITYGLERLAMYIQGVENVYDLEWSD 181
Query: 192 IEGQNVLYGDIFAQSEQEYSRYNFEYANPEILHNHFIDSEKECLDLLKKGIPNEHHRHHL 251
YGD+F Q+E E S YNFE A+ + L F EKE LL+ G+P
Sbjct: 182 GPLGKTTYGDVFHQNEVEQSTYNFETADVDFLFQLFKQYEKEAQQLLENGLP-------- 233
Query: 252 CVFPAYDQCIKASHIFNLLDARGVISTTERQRYILRIRSLAKACGEAFL 300
PAY+ +K SH FNLLDAR IS TERQRYILRIR+LAK EA+
Sbjct: 234 --LPAYEYVLKCSHSFNLLDARKAISVTERQRYILRIRNLAKGVAEAYY 280
>gnl|CDD|178947 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.
Length = 865
Score = 36.6 bits (86), Expect = 0.007
Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 170 GLERLAMYVQNVNSVYDI-VFNAI 192
GLER+A +Q V+S Y+ +F +
Sbjct: 226 GLERIAAVLQGVHSNYETDLFRPL 249
>gnl|CDD|184382 PRK13902, alaS, alanyl-tRNA synthetase; Provisional.
Length = 900
Score = 30.6 bits (70), Expect = 0.54
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 20/93 (21%)
Query: 107 KAVGIDPLIHDVRFVEDNWESPTLGAWGLG-----WECWCDGMEISQ--FTYFQQVCGIE 159
K +GIDP ++ F E WE G G +E G+E++ F +++ G
Sbjct: 175 KELGIDP--EEITFKESWWE-------GGGNAGPCFEVLVRGLELATLVFMQYKKD-GNR 224
Query: 160 CSPISGEIT---YGLERLAMYVQNVNSVYDIVF 189
+ +I YGLER+A Q + YD +F
Sbjct: 225 YVEMPLKIVDTGYGLERIAWASQGTPTAYDAIF 257
>gnl|CDD|161830 TIGR00344, alaS, alanine--tRNA ligase. The model describes
alanine--tRNA ligase. This enzyme catalyzes the reaction
(tRNAala + L-alanine + ATP = L-alanyl-tRNAala +
pyrophosphate + AMP).
Length = 851
Score = 30.4 bits (69), Expect = 0.61
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 5/30 (16%)
Query: 169 YGLERLAMYVQNVNSVYDI-----VFNAIE 193
GLER +Q V + YD + IE
Sbjct: 219 MGLERFVAVLQGVPTNYDTDIFLPLIEKIE 248
>gnl|CDD|178491 PLN02903, PLN02903, aminoacyl-tRNA ligase.
Length = 652
Score = 30.1 bits (68), Expect = 0.79
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 161 SPISGEITYGLERLAMYVQNVNSVYDIV 188
+P G I YGL+RL M + S+ D++
Sbjct: 589 APPHGGIAYGLDRLVMLLAGAKSIRDVI 616
>gnl|CDD|178488 PLN02900, PLN02900, alanyl-tRNA synthetase.
Length = 936
Score = 29.2 bits (66), Expect = 1.6
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 5/29 (17%)
Query: 170 GLERLAMYVQNVNSVYDI-----VFNAIE 193
GLERLA +QN S YD +F+AI+
Sbjct: 246 GLERLASILQNKPSNYDTDLFMPIFDAIQ 274
>gnl|CDD|184317 PRK13774, PRK13774, formimidoylglutamase; Provisional.
Length = 311
Score = 28.6 bits (64), Expect = 2.2
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 216 EYANPEILHNHFIDSEKECLDLLKKGIPNEHHRHHLCVFPAYD 258
+Y N H ID++KE L K I N HR + +D
Sbjct: 91 DYGNVYHDHEELIDTQKEFAMLAAKSIAN--HRQTFLLGGGHD 131
>gnl|CDD|163395 TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase. This family of
alanyl-tRNA synthetases is limited to the archaea, and
is a subset of those sequences identified by the model
pfam07973 covering the second additional domain (SAD) of
alanyl and threonyl tRNA synthetases.
Length = 902
Score = 28.4 bits (64), Expect = 2.4
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 16/98 (16%)
Query: 104 ESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWECWCDGMEISQFTYFQ---------Q 154
E L+ +GIDP ++ + E WE G G +E G+E++ + Q +
Sbjct: 168 EFLEELGIDPE--EITYKESPWEGG--GNAGPCFEVIVGGLELATLVFMQYEEDKEGEIE 223
Query: 155 VCGIECSPISGEIT---YGLERLAMYVQNVNSVYDIVF 189
+ G S + +I YGLER Q + YD +F
Sbjct: 224 IKGGRYSEMPLKIVDTGYGLERFVWASQGTPTAYDAIF 261
>gnl|CDD|185413 PTZ00047, PTZ00047, cytochrome c oxidase subunit II; Provisional.
Length = 162
Score = 28.2 bits (63), Expect = 2.7
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 9/47 (19%)
Query: 51 RALGPLSWKAAY---------VQPSRRPLDGRYAENPNRLQHYYQFQ 88
LGP + A V P+ +Y E+P+ + YY FQ
Sbjct: 6 SLLGPANISNANEEGEVKLQDVSAEDYPIPQKYLEDPDLIPKYYSFQ 52
>gnl|CDD|152414 pfam11979, DUF3480, Domain of unknown function (DUF3480). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 350 to 362 amino acids in length. This domain is
found associated with pfam01363.
Length = 354
Score = 28.1 bits (63), Expect = 3.2
Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 241 GIPNEHHRHHLCVFPAYDQCIKASHIFNLLDARGVISTTERQRYILRIRSLAKACGEA 298
G+P+ H + + I+ + +F L + L +A+AC A
Sbjct: 245 GVPSIR-VHRGSDYKNNNYIIRWTEVFFLQGDDDSHPSDPIDMSRL-AEQVARACCAA 300
>gnl|CDD|150514 pfam09852, DUF2079, Predicted membrane protein (DUF2079). This
domain, found in various hypothetical prokaryotic
proteins, has no known function.
Length = 451
Score = 28.1 bits (63), Expect = 3.3
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 248 RHHLCVFPAYDQCIKASHIFNLLDARGVISTTERQRYIL 286
R+ AYD I +++ R S+ E + L
Sbjct: 1 RYASLQSGAYDLGIFDQVLWSTSQGRPFYSSLEGVLHHL 39
>gnl|CDD|173607 PTZ00417, PTZ00417, lysine-tRNA ligase; Provisional.
Length = 585
Score = 27.7 bits (61), Expect = 3.9
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 162 PISGEITYGLERLAMYVQNVNSVYDIVF 189
P +G + G++R+ M++ N N + D++
Sbjct: 550 PPTGGLGLGIDRITMFLTNKNCIKDVIL 577
>gnl|CDD|183646 PRK12646, PRK12646, putative monovalent cation/H+ antiporter
subunit A; Reviewed.
Length = 800
Score = 27.4 bits (61), Expect = 5.4
Identities = 8/38 (21%), Positives = 17/38 (44%)
Query: 143 GMEISQFTYFQQVCGIECSPISGEITYGLERLAMYVQN 180
+ +S+F + + I I + + +RL M + N
Sbjct: 620 QLHVSEFGPLEIILAIVTVTIGISLIFIRQRLTMVILN 657
>gnl|CDD|128616 smart00321, WSC, present in yeast cell wall integrity and stress
response component proteins. Domain present in WSC
proteins, polycystin and fungal exoglucanase.
Length = 95
Score = 27.0 bits (60), Expect = 5.6
Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 129 TLGAWGLGWECWCDGMEISQFTYFQ--QVCGIECSPISGEITYGLERLAMYV 178
L A G EC+C S C CS E+ G RL++YV
Sbjct: 42 ALAALENGNECYCGDSLPSTSVSASDSSQCSTTCSGYPAEVCGGPNRLSVYV 93
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.322 0.139 0.443
Gapped
Lambda K H
0.267 0.0734 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,142,256
Number of extensions: 323242
Number of successful extensions: 537
Number of sequences better than 10.0: 1
Number of HSP's gapped: 532
Number of HSP's successfully gapped: 20
Length of query: 307
Length of database: 5,994,473
Length adjustment: 93
Effective length of query: 214
Effective length of database: 3,984,929
Effective search space: 852774806
Effective search space used: 852774806
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.7 bits)