RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780757|ref|YP_003065170.1| glycyl-tRNA synthetase subunit alpha [Candidatus Liberibacter asiaticus str. psy62] (307 letters) >gnl|CDD|181790 PRK09348, glyQ, glycyl-tRNA synthetase subunit alpha; Validated. Length = 283 Score = 602 bits (1555), Expect = e-173 Identities = 202/293 (68%), Positives = 234/293 (79%), Gaps = 14/293 (4%) Query: 8 KNDLSFQNIILTLTQYWAQQGCTILQPYDMEVGAGTFHPSTTLRALGPLSWKAAYVQPSR 67 ++FQ+IILTL YWA QGC ILQPYDMEVGAGTFHP+T LRALGP W AAYVQPSR Sbjct: 1 SKKMTFQDIILTLQDYWADQGCVILQPYDMEVGAGTFHPATFLRALGPEPWNAAYVQPSR 60 Query: 68 RPLDGRYAENPNRLQHYYQFQVIIKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWES 127 RP DGRY ENPNRLQHYYQFQVI+KP+P N+Q LY+ SL+A+GIDPL HD+RFVEDNWES Sbjct: 61 RPTDGRYGENPNRLQHYYQFQVILKPSPDNIQELYLGSLEALGIDPLEHDIRFVEDNWES 120 Query: 128 PTLGAWGLGWECWCDGMEISQFTYFQQVCGIECSPISGEITYGLERLAMYVQNVNSVYDI 187 PTLGAWGLGWE W DGME++QFTYFQQV GIEC P++GEITYGLERLAMY+Q V++VYD+ Sbjct: 121 PTLGAWGLGWEVWLDGMEVTQFTYFQQVGGIECKPVTGEITYGLERLAMYLQGVDNVYDL 180 Query: 188 VFNAIEGQNVLYGDIFAQSEQEYSRYNFEYANPEILHNHFIDSEKECLDLLKKGIPNEHH 247 V+N V YGD+F Q+E E S+YNFE+A+ E+L F D EKE LL+KG+P Sbjct: 181 VWN----DGVTYGDVFLQNEVEQSKYNFEHADVEMLFKLFDDYEKEAKRLLEKGLP---- 232 Query: 248 RHHLCVFPAYDQCIKASHIFNLLDARGVISTTERQRYILRIRSLAKACGEAFL 300 PAYD +KASH FNLLDARG IS TERQRYILRIR+LA+A EA+L Sbjct: 233 ------LPAYDYVLKASHTFNLLDARGAISVTERQRYILRIRNLARAVAEAYL 279 >gnl|CDD|184901 PRK14908, PRK14908, glycyl-tRNA synthetase; Provisional. Length = 1000 Score = 463 bits (1194), Expect = e-131 Identities = 172/287 (59%), Positives = 206/287 (71%), Gaps = 14/287 (4%) Query: 8 KNDLSFQNIILTLTQYWAQQGCTILQPYDMEVGAGTFHPSTTLRALGPLSWKAAYVQPSR 67 L+ Q+++L L +YW++QGC I Q YD+EVGAGTF+P+T LR LGP W+ AYV+PSR Sbjct: 2 SQPLTMQDMLLALLRYWSEQGCIIHQGYDLEVGAGTFNPATFLRVLGPEPWRVAYVEPSR 61 Query: 68 RPLDGRYAENPNRLQHYYQFQVIIKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWES 127 RP DGRY +NPNRLQ Y QFQVI+KP P N Q LY+ESLKA+GID HD+RFV D+WE+ Sbjct: 62 RPDDGRYGQNPNRLQTYTQFQVILKPVPGNPQELYLESLKAIGIDLRDHDIRFVHDDWEN 121 Query: 128 PTLGAWGLGWECWCDGMEISQFTYFQQVCGIECSPISGEITYGLERLAMYVQNVNSVYDI 187 PT+GAWGLGWE W DGMEI+QFTYFQQ G PISGEITYG+ER+AMY+Q VN DI Sbjct: 122 PTIGAWGLGWEVWLDGMEITQFTYFQQAGGKPLDPISGEITYGIERIAMYLQKVNHFKDI 181 Query: 188 VFNAIEGQNVLYGDIFAQSEQEYSRYNFEYANPEILHNHFIDSEKECLDLLKKGIPNEHH 247 +N + YG+IF Q+E E SRYNF+ AN E+ HF D E L LL G+P Sbjct: 182 AWN----DGLTYGEIFQQAEYEMSRYNFDDANTEMWLKHFEDYAAEALRLLDAGLP---- 233 Query: 248 RHHLCVFPAYDQCIKASHIFNLLDARGVISTTERQRYILRIRSLAKA 294 PAYD +KASH FN+LDARG IS TER RYI RIR LA+A Sbjct: 234 ------VPAYDFVLKASHAFNILDARGAISVTERTRYIARIRQLARA 274 >gnl|CDD|129483 TIGR00388, glyQ, glycyl-tRNA synthetase, tetrameric type, alpha subunit. This tetrameric form of glycyl-tRNA synthetase (2 alpha, 2 beta) is found in the majority of completed eubacterial genomes, with the two genes fused in a few species. A substantially different homodimeric form (not recognized by this model) replaces this form in the Archaea, animals, yeasts, and some eubacteria. Length = 293 Score = 452 bits (1165), Expect = e-128 Identities = 181/289 (62%), Positives = 215/289 (74%), Gaps = 10/289 (3%) Query: 12 SFQNIILTLTQYWAQQGCTILQPYDMEVGAGTFHPSTTLRALGPLSWKAAYVQPSRRPLD 71 +FQ +IL L +YWA QGC I+QPYDME GAGT HP T LR+LGP W AYV+PSRRP D Sbjct: 2 TFQGLILKLQEYWANQGCLIVQPYDMEKGAGTMHPMTFLRSLGPEPWAVAYVEPSRRPTD 61 Query: 72 GRYAENPNRLQHYYQFQVIIKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLG 131 GRY ENPNRLQHYYQFQV+IKP+P N+Q LY++SL+A+GIDP HD+RFVEDNWE+PTLG Sbjct: 62 GRYGENPNRLQHYYQFQVVIKPSPDNIQELYLDSLRALGIDPTEHDIRFVEDNWENPTLG 121 Query: 132 AWGLGWECWCDGMEISQFTYFQQVCGIECSPISGEITYGLERLAMYVQNVNSVYDIVFNA 191 AWGLGWE W DGME++QFTYFQQV G+EC P+S EITYGLERLAMY+Q V +VYD+ ++ Sbjct: 122 AWGLGWEVWLDGMEVTQFTYFQQVGGLECKPVSVEITYGLERLAMYIQGVENVYDLEWSD 181 Query: 192 IEGQNVLYGDIFAQSEQEYSRYNFEYANPEILHNHFIDSEKECLDLLKKGIPNEHHRHHL 251 YGD+F Q+E E S YNFE A+ + L F EKE LL+ G+P Sbjct: 182 GPLGKTTYGDVFHQNEVEQSTYNFETADVDFLFQLFKQYEKEAQQLLENGLP-------- 233 Query: 252 CVFPAYDQCIKASHIFNLLDARGVISTTERQRYILRIRSLAKACGEAFL 300 PAY+ +K SH FNLLDAR IS TERQRYILRIR+LAK EA+ Sbjct: 234 --LPAYEYVLKCSHSFNLLDARKAISVTERQRYILRIRNLAKGVAEAYY 280 >gnl|CDD|178947 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed. Length = 865 Score = 36.6 bits (86), Expect = 0.007 Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 1/24 (4%) Query: 170 GLERLAMYVQNVNSVYDI-VFNAI 192 GLER+A +Q V+S Y+ +F + Sbjct: 226 GLERIAAVLQGVHSNYETDLFRPL 249 >gnl|CDD|184382 PRK13902, alaS, alanyl-tRNA synthetase; Provisional. Length = 900 Score = 30.6 bits (70), Expect = 0.54 Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 20/93 (21%) Query: 107 KAVGIDPLIHDVRFVEDNWESPTLGAWGLG-----WECWCDGMEISQ--FTYFQQVCGIE 159 K +GIDP ++ F E WE G G +E G+E++ F +++ G Sbjct: 175 KELGIDP--EEITFKESWWE-------GGGNAGPCFEVLVRGLELATLVFMQYKKD-GNR 224 Query: 160 CSPISGEIT---YGLERLAMYVQNVNSVYDIVF 189 + +I YGLER+A Q + YD +F Sbjct: 225 YVEMPLKIVDTGYGLERIAWASQGTPTAYDAIF 257 >gnl|CDD|161830 TIGR00344, alaS, alanine--tRNA ligase. The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP). Length = 851 Score = 30.4 bits (69), Expect = 0.61 Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 5/30 (16%) Query: 169 YGLERLAMYVQNVNSVYDI-----VFNAIE 193 GLER +Q V + YD + IE Sbjct: 219 MGLERFVAVLQGVPTNYDTDIFLPLIEKIE 248 >gnl|CDD|178491 PLN02903, PLN02903, aminoacyl-tRNA ligase. Length = 652 Score = 30.1 bits (68), Expect = 0.79 Identities = 11/28 (39%), Positives = 17/28 (60%) Query: 161 SPISGEITYGLERLAMYVQNVNSVYDIV 188 +P G I YGL+RL M + S+ D++ Sbjct: 589 APPHGGIAYGLDRLVMLLAGAKSIRDVI 616 >gnl|CDD|178488 PLN02900, PLN02900, alanyl-tRNA synthetase. Length = 936 Score = 29.2 bits (66), Expect = 1.6 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 5/29 (17%) Query: 170 GLERLAMYVQNVNSVYDI-----VFNAIE 193 GLERLA +QN S YD +F+AI+ Sbjct: 246 GLERLASILQNKPSNYDTDLFMPIFDAIQ 274 >gnl|CDD|184317 PRK13774, PRK13774, formimidoylglutamase; Provisional. Length = 311 Score = 28.6 bits (64), Expect = 2.2 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 2/43 (4%) Query: 216 EYANPEILHNHFIDSEKECLDLLKKGIPNEHHRHHLCVFPAYD 258 +Y N H ID++KE L K I N HR + +D Sbjct: 91 DYGNVYHDHEELIDTQKEFAMLAAKSIAN--HRQTFLLGGGHD 131 >gnl|CDD|163395 TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases. Length = 902 Score = 28.4 bits (64), Expect = 2.4 Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 16/98 (16%) Query: 104 ESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWECWCDGMEISQFTYFQ---------Q 154 E L+ +GIDP ++ + E WE G G +E G+E++ + Q + Sbjct: 168 EFLEELGIDPE--EITYKESPWEGG--GNAGPCFEVIVGGLELATLVFMQYEEDKEGEIE 223 Query: 155 VCGIECSPISGEIT---YGLERLAMYVQNVNSVYDIVF 189 + G S + +I YGLER Q + YD +F Sbjct: 224 IKGGRYSEMPLKIVDTGYGLERFVWASQGTPTAYDAIF 261 >gnl|CDD|185413 PTZ00047, PTZ00047, cytochrome c oxidase subunit II; Provisional. Length = 162 Score = 28.2 bits (63), Expect = 2.7 Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 9/47 (19%) Query: 51 RALGPLSWKAAY---------VQPSRRPLDGRYAENPNRLQHYYQFQ 88 LGP + A V P+ +Y E+P+ + YY FQ Sbjct: 6 SLLGPANISNANEEGEVKLQDVSAEDYPIPQKYLEDPDLIPKYYSFQ 52 >gnl|CDD|152414 pfam11979, DUF3480, Domain of unknown function (DUF3480). This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 350 to 362 amino acids in length. This domain is found associated with pfam01363. Length = 354 Score = 28.1 bits (63), Expect = 3.2 Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 2/58 (3%) Query: 241 GIPNEHHRHHLCVFPAYDQCIKASHIFNLLDARGVISTTERQRYILRIRSLAKACGEA 298 G+P+ H + + I+ + +F L + L +A+AC A Sbjct: 245 GVPSIR-VHRGSDYKNNNYIIRWTEVFFLQGDDDSHPSDPIDMSRL-AEQVARACCAA 300 >gnl|CDD|150514 pfam09852, DUF2079, Predicted membrane protein (DUF2079). This domain, found in various hypothetical prokaryotic proteins, has no known function. Length = 451 Score = 28.1 bits (63), Expect = 3.3 Identities = 9/39 (23%), Positives = 15/39 (38%) Query: 248 RHHLCVFPAYDQCIKASHIFNLLDARGVISTTERQRYIL 286 R+ AYD I +++ R S+ E + L Sbjct: 1 RYASLQSGAYDLGIFDQVLWSTSQGRPFYSSLEGVLHHL 39 >gnl|CDD|173607 PTZ00417, PTZ00417, lysine-tRNA ligase; Provisional. Length = 585 Score = 27.7 bits (61), Expect = 3.9 Identities = 8/28 (28%), Positives = 18/28 (64%) Query: 162 PISGEITYGLERLAMYVQNVNSVYDIVF 189 P +G + G++R+ M++ N N + D++ Sbjct: 550 PPTGGLGLGIDRITMFLTNKNCIKDVIL 577 >gnl|CDD|183646 PRK12646, PRK12646, putative monovalent cation/H+ antiporter subunit A; Reviewed. Length = 800 Score = 27.4 bits (61), Expect = 5.4 Identities = 8/38 (21%), Positives = 17/38 (44%) Query: 143 GMEISQFTYFQQVCGIECSPISGEITYGLERLAMYVQN 180 + +S+F + + I I + + +RL M + N Sbjct: 620 QLHVSEFGPLEIILAIVTVTIGISLIFIRQRLTMVILN 657 >gnl|CDD|128616 smart00321, WSC, present in yeast cell wall integrity and stress response component proteins. Domain present in WSC proteins, polycystin and fungal exoglucanase. Length = 95 Score = 27.0 bits (60), Expect = 5.6 Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 2/52 (3%) Query: 129 TLGAWGLGWECWCDGMEISQFTYFQ--QVCGIECSPISGEITYGLERLAMYV 178 L A G EC+C S C CS E+ G RL++YV Sbjct: 42 ALAALENGNECYCGDSLPSTSVSASDSSQCSTTCSGYPAEVCGGPNRLSVYV 93 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.322 0.139 0.443 Gapped Lambda K H 0.267 0.0734 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 5,142,256 Number of extensions: 323242 Number of successful extensions: 537 Number of sequences better than 10.0: 1 Number of HSP's gapped: 532 Number of HSP's successfully gapped: 20 Length of query: 307 Length of database: 5,994,473 Length adjustment: 93 Effective length of query: 214 Effective length of database: 3,984,929 Effective search space: 852774806 Effective search space used: 852774806 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 57 (25.7 bits)