RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780757|ref|YP_003065170.1| glycyl-tRNA synthetase subunit
alpha [Candidatus Liberibacter asiaticus str. psy62]
(307 letters)
>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics,
TM0216, JCSG, PSI, protein structure initiative; 1.95A
{Thermotoga maritima} (A:1-199)
Length = 199
Score = 357 bits (919), Expect = e-100
Identities = 120/198 (60%), Positives = 148/198 (74%), Gaps = 4/198 (2%)
Query: 4 IHNKKNDLSFQNIILTLTQYWAQQGCTILQPYDMEVGAGTFHPSTTLRALGPLSWKAAYV 63
IH+ + Q++I L +WA +GC + QPYD EVGAGTFHP+T +L WK AYV
Sbjct: 6 IHHHHHHXYLQDVIXKLNDFWASKGCLLEQPYDXEVGAGTFHPATFFGSLRKGPWKVAYV 65
Query: 64 QPSRRPLDGRYAENPNRLQHYYQFQVIIKPNPLNLQNLYIESLKAVGIDPLIHDVRFVED 123
QPSRRP DGRY ENPNRLQ Y+Q+QVIIKP+P N Q LY+ESL+ +GI+ HD+RFVED
Sbjct: 66 QPSRRPTDGRYGENPNRLQRYFQYQVIIKPSPENSQELYLESLEYLGINLKEHDIRFVED 125
Query: 124 NWESPTLGAWGLGWECWCDGMEISQFTYFQQVCGIECSPISGEITYGLERLAMYVQNVNS 183
NWESPTLGAWG+GWE W DG EI+QFTYFQQ+ GI I EITYGLER+A Y+Q V++
Sbjct: 126 NWESPTLGAWGVGWEVWLDGXEITQFTYFQQIGGISLKDIPLEITYGLERIAXYLQGVDN 185
Query: 184 VYDIVFNAIEGQNVLYGD 201
VY++ +N +NV YGD
Sbjct: 186 VYEVQWN----ENVKYGD 199
>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics,
TM0216, JCSG, PSI, protein structure initiative; 1.95A
{Thermotoga maritima} (A:200-298)
Length = 99
Score = 143 bits (363), Expect = 2e-35
Identities = 42/101 (41%), Positives = 60/101 (59%), Gaps = 10/101 (9%)
Query: 202 IFAQSEQEYSRYNFEYANPEILHNHFIDSEKECLDLLKKGIPNEHHRHHLCVFPAYDQCI 261
+F ++E+E+S +NFE AN +L HF + EKE L++K + PAYD +
Sbjct: 1 VFLENEREFSVFNFEEANVGLLFRHFDEYEKEFYRLVEKNLY----------LPAYDYIL 50
Query: 262 KASHIFNLLDARGVISTTERQRYILRIRSLAKACGEAFLMT 302
K SH FNLLDARG IS ++RQ Y+ RI++ A+ FL
Sbjct: 51 KCSHTFNLLDARGAISVSQRQTYVKRIQAXARKAARVFLEV 91
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
(A:1-260)
Length = 260
Score = 34.5 bits (79), Expect = 0.020
Identities = 18/93 (19%), Positives = 29/93 (31%), Gaps = 16/93 (17%)
Query: 104 ESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWECWCDGMEISQFTYFQQVCGIECSPI 163
E L +G+ D+ + E+ W G G E G+E++ + E
Sbjct: 172 ELLNELGVKK--EDIVYKEEPWAGG--GNAGPCLEAIVGGLEVATLVFXNLEEHPEGDIE 227
Query: 164 SGEITY------------GLERLAMYVQNVNSV 184
Y GLER + +V
Sbjct: 228 IKGARYRKXDNYIVDTGYGLERFVWASKGTPTV 260
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric
enzyme, flexible domains, ligase; 2.01A {Thermus
thermophilus} (A:135-278,A:415-546)
Length = 276
Score = 30.8 bits (69), Expect = 0.22
Identities = 10/48 (20%), Positives = 19/48 (39%)
Query: 141 CDGMEISQFTYFQQVCGIECSPISGEITYGLERLAMYVQNVNSVYDIV 188
E + F +P G I +GL+RL + S+ +++
Sbjct: 229 IGEEEQREKFGFFLEALEYGAPPHGGIAWGLDRLLALMTGSPSIREVI 276
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A
{Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* (A:1-266)
Length = 266
Score = 30.2 bits (68), Expect = 0.38
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 169 YGLERLAMYVQNVNSV 184
YGLERL Q +
Sbjct: 251 YGLERLVWMSQGTPTA 266
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix
motif, amino acid binding, ligase; 2.08A {Aquifex
aeolicus} (A:1-237)
Length = 237
Score = 29.9 bits (67), Expect = 0.45
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 169 YGLERLAMYVQNVNSVY 185
GLER+A +Q NS +
Sbjct: 221 MGLERIASVLQGKNSNF 237
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural
genomics, PSI, protein structure initiative; 1.65A
{Pyrococcus furiosus} (A:)
Length = 294
Score = 29.5 bits (64), Expect = 0.60
Identities = 7/48 (14%), Positives = 17/48 (35%)
Query: 142 DGMEISQFTYFQQVCGIECSPISGEITYGLERLAMYVQNVNSVYDIVF 189
G+ F + ++ S G+ERL ++ + ++
Sbjct: 236 AGLNEDSFRPYLEIAKAGKLKPSAGAGIGVERLVRFIVGAKHIAEVQP 283
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex; HET: 4SU H2U
QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli}
(A:129-271,A:422-557)
Length = 279
Score = 28.6 bits (63), Expect = 1.1
Identities = 6/19 (31%), Positives = 13/19 (68%)
Query: 170 GLERLAMYVQNVNSVYDIV 188
GL+RL M + +++ D++
Sbjct: 256 GLDRLTMLLTGTDNIRDVI 274
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase,
protein biosynthesis, nucleotide-binding, amino
acid-binding, acetylation; HET: G5A EPE; 1.90A
{Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A*
3hxw_A* 3hxx_A* 3hxy_A* (A:1-252)
Length = 252
Score = 27.2 bits (60), Expect = 3.2
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 169 YGLERLAMYVQNVNS 183
GLER+A +Q+VNS
Sbjct: 238 MGLERIAAVLQHVNS 252
>1pgs_A Peptide-N(4)-(N-acetyl-beta-D-glucosaminyl) asparagine
amidase F; endoglycosidase; 1.80A {Elizabethkingia
meningoseptica} (A:138-314)
Length = 177
Score = 26.8 bits (59), Expect = 3.3
Identities = 6/17 (35%), Positives = 7/17 (41%)
Query: 131 GAWGLGWECWCDGMEIS 147
G W WC GM +
Sbjct: 105 GNWTPDRAGWCPGMAVP 121
>2c4x_A Endoglucanase, ctcel9D-CEL44A; cellulase ctcel9D-CEL44A, PKD
domain, CBM44, carbohydrate binding module,
beta-sandwich proteins; 2.0A {Clostridium thermocellum}
PDB: 2c26_A (A:105-260)
Length = 156
Score = 26.6 bits (58), Expect = 4.1
Identities = 1/27 (3%), Positives = 11/27 (40%)
Query: 101 LYIESLKAVGIDPLIHDVRFVEDNWES 127
+ ++++ + + ++E +
Sbjct: 129 IQVQTIDEGEFTIYVDAIDWLEHHHHH 155
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4
glycosyltransferase, rossmann fold, binary complex; HET:
GDP; 2.40A {Mycobacterium smegmatis str} PDB: 2gej_A*
(A:1-197,A:367-406)
Length = 237
Score = 26.5 bits (57), Expect = 4.4
Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 6/95 (6%)
Query: 212 RYNFEYANPEILHNHFIDSEKECLDLLKK-GIPNEHHRHHLCVFPAYDQCIKASHIFNLL 270
+ + ++LH H ++ + L+ P H +
Sbjct: 100 KKWIAEGDFDVLHIHEPNAPSLSMLALQAAEGPIVATFHTSTTKSLTLSVFQGILRPYHE 159
Query: 271 DARGVISTTERQRYILRIRSLAKACGEAFLMTPNG 305
G I+ ++ R R +A G + PNG
Sbjct: 160 KIIGRIAVSDLAR-----RWQMEALGSDAVEIPNG 189
>1eg7_A Formyltetrahydrofolate synthetase; folate binding, ATP
binding, formate binding, monovalent cation binding,
ligase; 2.50A {Moorella thermoacetica}
(A:1-125,A:255-437)
Length = 308
Score = 26.0 bits (57), Expect = 7.4
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 229 DSEKECLDLLKKGIPN-EHHRHHLCVF 254
D E L+ L++G N E H ++ F
Sbjct: 218 DLATENLEALREGFANLEKHIENIGKF 244
>1n1c_A TORA specific chaperone; TORD, 3D-domain swapping; 2.40A
{Shewanella massilia} (A:129-217)
Length = 89
Score = 25.5 bits (56), Expect = 8.7
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 203 FAQSEQEYSRYNFEYANPEILHNHFIDSEKECLDLLKKGIPNEHHRHH 250
F + ++ F Y+ L ++ + L+ I EHH HH
Sbjct: 42 FINHLTQCNKNGF-YSAVATLTLAWVKQDIAQLEPAVAIISLEHHHHH 88
>2uuz_A GAMS, HOST-nuclease inhibitor protein GAM; recbcd inhibitor,
putative DNA mimic; 2.3A {Bacteriophage lambda} PDB:
2uv1_A (A:)
Length = 99
Score = 25.4 bits (55), Expect = 8.9
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 9/47 (19%)
Query: 207 EQEYSRYNFEYANPEILHNHFIDSEKECLDLLKKGIPNEHHRHHLCV 253
Q ++R+ + A E E E D ++KGIP +H LC+
Sbjct: 13 AQSWARHYQQLAREE--------KEAELADDMEKGIP-QHLFESLCI 50
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.322 0.139 0.443
Gapped
Lambda K H
0.267 0.0649 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,539,383
Number of extensions: 118876
Number of successful extensions: 296
Number of sequences better than 10.0: 1
Number of HSP's gapped: 295
Number of HSP's successfully gapped: 25
Length of query: 307
Length of database: 4,956,049
Length adjustment: 88
Effective length of query: 219
Effective length of database: 1,981,209
Effective search space: 433884771
Effective search space used: 433884771
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.7 bits)