RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780757|ref|YP_003065170.1| glycyl-tRNA synthetase subunit
alpha [Candidatus Liberibacter asiaticus str. psy62]
(307 letters)
>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216,
JCSG, PSI, protein structure initiative; 1.95A
{Thermotoga maritima} SCOP: d.104.1.1
Length = 298
Score = 519 bits (1338), Expect = e-148
Identities = 163/292 (55%), Positives = 210/292 (71%), Gaps = 14/292 (4%)
Query: 11 LSFQNIILTLTQYWAQQGCTILQPYDMEVGAGTFHPSTTLRALGPLSWKAAYVQPSRRPL 70
+ Q++I+ L +WA +GC + QPYDMEVGAGTFHP+T +L WK AYVQPSRRP
Sbjct: 13 MYLQDVIMKLNDFWASKGCLLEQPYDMEVGAGTFHPATFFGSLRKGPWKVAYVQPSRRPT 72
Query: 71 DGRYAENPNRLQHYYQFQVIIKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTL 130
DGRY ENPNRLQ Y+Q+QVIIKP+P N Q LY+ESL+ +GI+ HD+RFVEDNWESPTL
Sbjct: 73 DGRYGENPNRLQRYFQYQVIIKPSPENSQELYLESLEYLGINLKEHDIRFVEDNWESPTL 132
Query: 131 GAWGLGWECWCDGMEISQFTYFQQVCGIECSPISGEITYGLERLAMYVQNVNSVYDIVFN 190
GAWG+GWE W DGMEI+QFTYFQQ+ GI I EITYGLER+AMY+Q V++VY++ +N
Sbjct: 133 GAWGVGWEVWLDGMEITQFTYFQQIGGISLKDIPLEITYGLERIAMYLQGVDNVYEVQWN 192
Query: 191 AIEGQNVLYGDIFAQSEQEYSRYNFEYANPEILHNHFIDSEKECLDLLKKGIPNEHHRHH 250
+NV YGD+F ++E+E+S +NFE AN +L HF + EKE L++K +
Sbjct: 193 ----ENVKYGDVFLENEREFSVFNFEEANVGLLFRHFDEYEKEFYRLVEKNLY------- 241
Query: 251 LCVFPAYDQCIKASHIFNLLDARGVISTTERQRYILRIRSLAKACGEAFLMT 302
PAYD +K SH FNLLDARG IS ++RQ Y+ RI+++A+ FL
Sbjct: 242 ---LPAYDYILKCSHTFNLLDARGAISVSQRQTYVKRIQAMARKAARVFLEV 290
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Length = 739
Score = 44.7 bits (105), Expect = 3e-05
Identities = 39/206 (18%), Positives = 68/206 (33%), Gaps = 28/206 (13%)
Query: 104 ESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWECWCDGMEISQFTYFQQVCGIECSP- 162
E L +G+ D+ + E+ W G G E G+E++ + E
Sbjct: 172 ELLNELGVKK--EDIVYKEEPWAGG--GNAGPCLEAIVGGLEVATLVFMNLEEHPEGDIE 227
Query: 163 -----------ISGEITYGLERLAMYVQNVNSVYDIVFNAIEGQNVLYGDIFAQSEQEYS 211
+ YGLER + +VYD +F + + ++ E E
Sbjct: 228 IKGARYRKMDNYIVDTGYGLERFVWASKGTPTVYDAIFPEVVDTIIDNSNVSFNREDERV 287
Query: 212 RYNFEYANPEILHNHFIDSEKECLDLLKKGIPNE----HHRHHLCVFPAYDQCIKASHI- 266
R ++ L + E L+ L+K + + V P A H
Sbjct: 288 RRIVAESSK--LAGIMGELRGERLNQLRKSVADTVGVSVEELEGIVVPLEKVYSLADHTR 345
Query: 267 ---FNLLDARGVISTTERQRYILRIR 289
F L D G++ + Y+ R+
Sbjct: 346 CILFMLGD--GLVPSNAGAGYLARLM 369
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A
{Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Length = 752
Score = 37.0 bits (85), Expect = 0.006
Identities = 32/195 (16%), Positives = 55/195 (28%), Gaps = 39/195 (20%)
Query: 122 EDNWESPTLGAWGLGWECW-C-----DGMEISQFTYFQQVCGIECSPISGEIT------- 168
++N W G G+E++ + Q E +P +
Sbjct: 188 KENP-------WAGGGNAGPAFEVLYRGLEVATLVFMQYXXAPENAPQDQVVVIXGEKYI 240
Query: 169 ----------YGLERLAMYVQNVNSVYDIVFNAIEGQNVLYGDIFAQSEQEYSRYNFEYA 218
YGLERL Q + YD V + I E+ +
Sbjct: 241 PMETXVVDTGYGLERLVWMSQGTPTAYDAVLGYVVEPLXXMAGIEKIDEKILMENSRLAG 300
Query: 219 NPEILHNHFIDSEKECLDLLKKGIPNEHHRHHLCVFPAYDQCIKASHI----FNLLDARG 274
+I + + + + K + + P A H F L D G
Sbjct: 301 MFDIED---LGDLRYLREQVAKRVGITVEELEKAIRPYELIYAIADHTKALTFMLAD--G 355
Query: 275 VISTTERQRYILRIR 289
V+ + Y+ R+
Sbjct: 356 VVPSNVXAGYLARLL 370
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis S2}
Length = 701
Score = 36.9 bits (85), Expect = 0.006
Identities = 30/230 (13%), Positives = 68/230 (29%), Gaps = 36/230 (15%)
Query: 48 TTLRA-LGPLSWKAAYVQPSRRPLDGRYA--------ENPNRLQHYYQF-QV--IIKPNP 95
TLR+ + + +++PL + E H + I
Sbjct: 200 LTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEG 259
Query: 96 LNLQNL---YIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWECWCDG-MEISQFTY 151
+++ + L G + + +P + +E++ F
Sbjct: 260 VDINDGKAIAEGLLSQFGFTNFKFIPDEKKSKYYTPETQTEVYAYHPKLKEWLEVATFGV 319
Query: 152 F-QQV---CGIECSPISGEITYGLERLAMYVQNVNSVYDIVFNAIEGQNVLYGDIFAQSE 207
+ GI+ ++ + G+ERLAM N V ++V+ + ++
Sbjct: 320 YSPVALSKYGIDVPVMNLGL--GVERLAMISGNFADVREMVYPQFYEHKL--------ND 369
Query: 208 QEYSRYNFEYANPEILHNHFIDSEKECLDLLKKGIPNEHHRHHLCVFPAY 257
+ + P + + D KE ++ K + C
Sbjct: 370 RNVASMVKLDKVPVM--DEIYDLTKELIESCVKNKDLKSP----CELAIE 413
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics,
PSI-2, protein structure initiative; HET: PG4; 1.80A
{Saccharomyces cerevisiae}
Length = 432
Score = 28.6 bits (63), Expect = 1.7
Identities = 16/137 (11%), Positives = 35/137 (25%), Gaps = 14/137 (10%)
Query: 102 YIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWEC---WCDGMEISQFTYFQQVCGI 158
+ + AVG DP + F + + + + F + G
Sbjct: 166 NAKDIIAVGFDPKNTFI-FSDLQYMGGAFYETVVRVSRQITGSTAKAVFGFNDSDCI-GK 223
Query: 159 ECSPISGEITYGLERLAMYVQNVNSVYDIVFNAIEG-QNVLYGDIFAQSEQEYSRYNFEY 217
T + + ++ AI+ A + +
Sbjct: 224 FHFASIQIATAFPSSFPNVLGLPDKTPCLIPCAIDQDPYFRVCRDVAD------KLKYSK 277
Query: 218 ANPEILHNHFIDSEKEC 234
P +LH+ F + +
Sbjct: 278 --PALLHSRFFPALQGS 292
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein
biosynthesis, nucleotide-binding, amino acid-binding,
acetylation; HET: G5A EPE; 1.90A {Escherichia coli} PDB:
3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A*
Length = 441
Score = 27.6 bits (61), Expect = 3.2
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 166 EITYGLERLAMYVQNVNSVYDI-VFNAI 192
+ GLER+A +Q+VNS YDI +F +
Sbjct: 235 DTAMGLERIAAVLQHVNSNYDIDLFRTL 262
>1o75_A 47 kDa membrane antigen; LIPOPROTEINULLNTIGEN, penicillin-binding
protein, integral membrane lipoprotein, immunogen,
four-domain protein; HET: PDX; 1.95A {Treponema
pallidum} SCOP: b.1.20.1 b.1.20.1 b.120.1.1
Length = 415
Score = 27.4 bits (60), Expect = 3.8
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 11/57 (19%)
Query: 9 NDLSFQNIILTL-TQY----WAQQG------CTILQPYDMEVGAGTFHPSTTLRALG 54
+D S+ N++ + T++ W + G C I +D G+G + TL A G
Sbjct: 265 DDASYTNLMASYGTKHSADSWWKTGRVPRISCGINYGFDRFKGSGPGYYRLTLIANG 321
>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain,
hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis}
SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A*
Length = 1020
Score = 26.4 bits (58), Expect = 8.1
Identities = 5/39 (12%), Positives = 10/39 (25%)
Query: 95 PLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAW 133
P+ L N + + L ++ W
Sbjct: 391 PILLANQIGRTDAGFYRNELKPAADYLVAAGPKTPQERW 429
>2d3y_A Uracil-DNA glycosylase; base excision repair, iron/sulfer cluster,
thermophIle, structural genomics, NPPSFA; HET: DU; 1.55A
{Thermus thermophilus HB8} PDB: 2ddg_A* 2dem_A* 2dp6_A*
Length = 219
Score = 26.0 bits (56), Expect = 9.8
Identities = 4/18 (22%), Positives = 8/18 (44%)
Query: 42 GTFHPSTTLRALGPLSWK 59
++H S G L+ +
Sbjct: 187 ASYHVSRQNTQTGRLTRE 204
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.322 0.139 0.443
Gapped
Lambda K H
0.267 0.0584 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,813,738
Number of extensions: 130290
Number of successful extensions: 371
Number of sequences better than 10.0: 1
Number of HSP's gapped: 369
Number of HSP's successfully gapped: 14
Length of query: 307
Length of database: 5,693,230
Length adjustment: 92
Effective length of query: 215
Effective length of database: 3,462,782
Effective search space: 744498130
Effective search space used: 744498130
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.7 bits)