RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780757|ref|YP_003065170.1| glycyl-tRNA synthetase subunit alpha [Candidatus Liberibacter asiaticus str. psy62] (307 letters) >d1j5wa_ d.104.1.1 (A:) Glycyl-tRNA synthetase (GlyRS) alpha chain {Thermotoga maritima [TaxId: 2336]} Length = 281 Score = 488 bits (1258), Expect = e-139 Identities = 163/292 (55%), Positives = 210/292 (71%), Gaps = 14/292 (4%) Query: 11 LSFQNIILTLTQYWAQQGCTILQPYDMEVGAGTFHPSTTLRALGPLSWKAAYVQPSRRPL 70 + Q++I+ L +WA +GC + QPYDMEVGAGTFHP+T +L WK AYVQPSRRP Sbjct: 1 MYLQDVIMKLNDFWASKGCLLEQPYDMEVGAGTFHPATFFGSLRKGPWKVAYVQPSRRPT 60 Query: 71 DGRYAENPNRLQHYYQFQVIIKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTL 130 DGRY ENPNRLQ Y+Q+QVIIKP+P N Q LY+ESL+ +GI+ HD+RFVEDNWESPTL Sbjct: 61 DGRYGENPNRLQRYFQYQVIIKPSPENSQELYLESLEYLGINLKEHDIRFVEDNWESPTL 120 Query: 131 GAWGLGWECWCDGMEISQFTYFQQVCGIECSPISGEITYGLERLAMYVQNVNSVYDIVFN 190 GAWG+GWE W DGMEI+QFTYFQQ+ GI I EITYGLER+AMY+Q V++VY++ +N Sbjct: 121 GAWGVGWEVWLDGMEITQFTYFQQIGGISLKDIPLEITYGLERIAMYLQGVDNVYEVQWN 180 Query: 191 AIEGQNVLYGDIFAQSEQEYSRYNFEYANPEILHNHFIDSEKECLDLLKKGIPNEHHRHH 250 +NV YGD+F ++E+E+S +NFE AN +L HF + EKE L++K + Sbjct: 181 ----ENVKYGDVFLENEREFSVFNFEEANVGLLFRHFDEYEKEFYRLVEKNLY------- 229 Query: 251 LCVFPAYDQCIKASHIFNLLDARGVISTTERQRYILRIRSLAKACGEAFLMT 302 PAYD +K SH FNLLDARG IS ++RQ Y+ RI+++A+ FL Sbjct: 230 ---LPAYDYILKCSHTFNLLDARGAISVSQRQTYVKRIQAMARKAARVFLEV 278 >d1riqa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} Length = 236 Score = 30.7 bits (69), Expect = 0.17 Identities = 8/17 (47%), Positives = 11/17 (64%) Query: 169 YGLERLAMYVQNVNSVY 185 GLER+A +Q NS + Sbjct: 220 MGLERIASVLQGKNSNF 236 >d1i39a_ c.55.3.1 (A:) Class II ribonuclease H (RNase HII) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 200 Score = 25.2 bits (54), Expect = 7.3 Identities = 10/120 (8%), Positives = 26/120 (21%), Gaps = 18/120 (15%) Query: 133 WGLGWECWCDGMEISQFTYFQQVCGIECSPISGEITYGLERLAMYVQNV--NSVYDIVFN 190 + + + + E I+G + V S+ Sbjct: 87 AEIILRLKPEIAYVDSPDVIPERLSRELEEITGLRVVAEHKADEKYPLVAAASIIA---- 142 Query: 191 AIEGQNVLYGDIFAQSEQEYSRYNFEYANPEILHNHFIDSEKECLDLLKKGIPNEHHRHH 250 V + ++++ + YA+ + + G R Sbjct: 143 -----KVEREREIERLKEKFGDFGSGYASDPRTREVL-------KEWIASGRIPSCVRMR 190 >d2icwg1 a.202.1.1 (G:1-213) Superantigen MAM {Mycoplasma arthritidis [TaxId: 2111]} Length = 213 Score = 25.0 bits (54), Expect = 8.2 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 1/42 (2%) Query: 229 DSEKECLDLLKKGIPNEHHRHHLCVFPAYDQCIKASHIFNLL 270 + KE L L K + N+ +RH + Y+ ++ IFN++ Sbjct: 39 EETKEVLKLFKLKV-NQFYRHAFGIVNDYNGLLEYKEIFNMM 79 >d1o75a1 b.1.20.1 (A:207-332) Tp47 lipoprotein, middle and C-terminal domains {Treponema pallidum [TaxId: 160]} Length = 126 Score = 25.1 bits (54), Expect = 8.3 Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 6/37 (16%) Query: 24 WAQQG------CTILQPYDMEVGAGTFHPSTTLRALG 54 W + G C I +D G+G + TL A G Sbjct: 79 WWKTGRVPRISCGINYGFDRFKGSGPGYYRLTLIANG 115 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.322 0.139 0.443 Gapped Lambda K H 0.267 0.0651 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,231,282 Number of extensions: 58306 Number of successful extensions: 153 Number of sequences better than 10.0: 1 Number of HSP's gapped: 151 Number of HSP's successfully gapped: 17 Length of query: 307 Length of database: 2,407,596 Length adjustment: 85 Effective length of query: 222 Effective length of database: 1,240,546 Effective search space: 275401212 Effective search space used: 275401212 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 53 (24.4 bits)