HHsearch alignment for GI: 254780758 and conserved domain: COG0595
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair].
Probab=99.77 E-value=4.6e-18 Score=124.71 Aligned_cols=192 Identities=22% Similarity=0.264 Sum_probs=124.0
Q ss_pred CCEEEEEECCCCC---CCEEEEEECCCCEEEEECCCCC---H-----HHH---HHHHHHCCCCEEEEEECCCCCCCCCCC
Q ss_conf 7359999708765---7169999889984999838999---9-----999---999997499752999869885210110
Q gi|254780758|r 3 KLSFHIVQVTPFK---QNCTFLFDEESLEAVVVDPGGD---L-----DII---KDVIQSRNFHVKQIWITHGHVDHVGGA 68 (216)
Q Consensus 3 ~~~~~~i~v~~~~---~N~~li~~~~~~~~ilID~G~~---~-----~~i---~~~l~~~~~~i~~Ii~TH~H~DH~gg~ 68 (216)
T Consensus 6 ~~~i~i~~lGG~~EiGkN~~vve~~~--~i~i~D~G~~fp~~~~~gvDliIPd~~yl~~n~~kvkgI~lTHgHeDHIGai 83 (555)
T COG0595 6 KAKIKIFALGGVGEIGKNMYVVEYGD--DIIILDAGLKFPEDDLLGVDLIIPDFSYLEENKDKVKGIFLTHGHEDHIGAL 83 (555)
T ss_pred CCCEEEEEECCHHHHCCCEEEEEECC--CEEEEECCCCCCCCCCCCCCEEECCHHHHHHCCCCCEEEEECCCCHHHCCCH
T ss_conf 78558998058102226238999789--6899977656686435555588258277431500213999468744432346
Q ss_pred HHHHHHHC-CCEEECCHHHHHHHCCHHHHHHHHHCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCC-CCCCCCC--
Q ss_conf 56788607-9554058438988401234444320023466667418964783997620123310122247-2100000--
Q gi|254780758|r 69 AQLKEDLS-LTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHIFKVFHCPGHS-PGHVIYV-- 144 (216)
Q Consensus 69 ~~l~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~i~lg~~~~~vi~tPGHt-~g~~~~~-- 144 (216)
T Consensus 84 p~ll~~~~~~piy~s~lt~~Li~~k~~~~-------~~~~~~~~~~ev~~~~~i~~~~~~v~f~~v-tHSIPds~g~~i~ 155 (555)
T COG0595 84 PYLLKQVLFAPIYASPLTAALIKEKLKEH-------GLFKNENELHEVKPGSEIKFGSFEVEFFPV-THSIPDSLGIVIK 155 (555)
T ss_pred HHHHHCCCCCCEECCHHHHHHHHHHHHHH-------CCCCCCCCEEEECCCCEEEECCEEEEEEEE-CCCCCCCEEEEEE
T ss_conf 78985277684444776699999898873-------211356743994799857767679999960-3557451689998
Q ss_pred CCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHH-HHHCCCCCEEEE-ECCCCCCCHHHHH
Q ss_conf 1234321111000001356634679899999999999-985199978998-4887988889998
Q gi|254780758|r 145 NFENNFAHLGDTLFRSSIGRTDILHGDYQQLINSINN-KILPLGDEISFV-CGHGPNSTIGRER 206 (216)
Q Consensus 145 ~~~~~~lftGD~lf~~~~G~~d~~~~d~~~~~~sl~~-~l~~l~~~~~v~-PgHG~~tt~~~e~ 206 (216)
T Consensus 156 Tp~G~Iv~TGDFk~d~~~~--~g~~~d~~r~~~~g~eGVl~LisdsTna~~pg~t~SE~~v~~~ 217 (555)
T COG0595 156 TPEGNIVYTGDFKFDPTPV--DGEPTDLARLAEIGKEGVLALISDSTNAENPGFTPSESEVGEN 217 (555)
T ss_pred CCCCCEEEECCEEECCCCC--CCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHH
T ss_conf 7984389968778558867--7776788999974667847999578656899989788999999