HHsearch alignment for GI: 254780758 and conserved domain: COG1236
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis].
Probab=99.45 E-value=1.3e-13 Score=98.87 Aligned_cols=137 Identities=18% Similarity=0.207 Sum_probs=89.0
Q ss_pred CCEEEEEECCCCEEEEECCCCCHHHHHHH--HH-HCCCCEEEEEECCCCCCCCCCCHHHHHH-HCCCEEECCHHHHHHHC
Q ss_conf 71699998899849998389999999999--99-7499752999869885210110567886-07955405843898840
Q gi|254780758|r 16 QNCTFLFDEESLEAVVVDPGGDLDIIKDV--IQ-SRNFHVKQIWITHGHVDHVGGAAQLKED-LSLTIIGPHKDDAAMMG 91 (216)
Q Consensus 16 ~N~~li~~~~~~~~ilID~G~~~~~i~~~--l~-~~~~~i~~Ii~TH~H~DH~gg~~~l~~~-~~~~i~~~~~~~~~~~~ 91 (216)
T Consensus 14 ~s~~~l~~~~--~~il~D~G~~~~~~~~~~p~~~~~~-~vDavllTHaHlDH~g~lp~l~~~~~~~~v~aT~~T~~l~~~ 90 (427)
T COG1236 14 RSCVLLETGG--TRILLDCGLFPGDPSPERPLLPPFP-KVDAVLLTHAHLDHIGALPYLVRNGFEGPVYATPPTAALLKV 90 (427)
T ss_pred CEEEEEEECC--CEEEECCCCCCCCCCCCCCCCCCCC-CCCEEEEECCCHHHHCCCHHHHHHCCCCCEEECHHHHHHHHH
T ss_conf 5468987479--7699658988576765576788888-767799600652432346788763127865753518999998
Q ss_pred CHHHHHHHHHC--------CCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCH
Q ss_conf 12344443200--------23466667418964783997620123310122247210000012--3432111100
Q gi|254780758|r 92 KVDEQARLLSI--------RMNARNASSDRWLQDGDTLLLGTHIFKVFHCPGHSPGHVIYVNF--ENNFAHLGDT 156 (216)
Q Consensus 92 ~~~~~~~~~~~--------~~~~~~~~~~~~l~~gd~i~lg~~~~~vi~tPGHt~g~~~~~~~--~~~~lftGD~ 156 (216)
T Consensus 91 ~l~d~~~~~~~~~~~~~~~~d~~~~~~~~~~~~yg~~~~v~~~~v~~~~A-GHilGsa~~~le~~~~~ilytGD~ 164 (427)
T COG1236 91 LLGDSLKLAEGPDKPPYSEEDVERVPDLIRPLPYGEPVEVGGVKVTFYNA-GHILGSAAILLEVDGGRILYTGDV 164 (427)
T ss_pred HHHCCCCCCCCCCCCCCCHHHHHHHHHCEEEECCCCEEEECCEEEEEECC-CCCCCEEEEEEEECCCEEEEEECC
T ss_conf 73111010357777765434566555222770589817865289999717-974102799999689479998236