HHsearch alignment for GI: 254780758 and conserved domain: PRK00055

>PRK00055 ribonuclease Z; Reviewed.
Probab=99.50  E-value=9.4e-14  Score=99.68  Aligned_cols=145  Identities=21%  Similarity=0.183  Sum_probs=85.9

Q ss_pred             CEEEEEECC-CC-----CCCEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCC---CEEEEEECCCCCCCCCCCHHHHHH
Q ss_conf             359999708-76-----571699998899849998389999999999997499---752999869885210110567886
Q gi|254780758|r    4 LSFHIVQVT-PF-----KQNCTFLFDEESLEAVVVDPGGDLDIIKDVIQSRNF---HVKQIWITHGHVDHVGGAAQLKED   74 (216)
Q Consensus         4 ~~~~~i~v~-~~-----~~N~~li~~~~~~~~ilID~G~~~~~i~~~l~~~~~---~i~~Ii~TH~H~DH~gg~~~l~~~   74 (216)
T Consensus         2 mkit~LGtg~~~p~~~R~~s~~li~~~~--~~iliD~G~G~---~~~l~~~~~~~~~l~~I~iTH~H~DH~~Gl~~ll~~   76 (259)
T PRK00055          2 MELTFLGTGSGVPTPTRNVSSILLRLGG--ELWLFDCGEGT---QRQMLRAGIGPRKIDRIFITHLHGDHIFGLPGLLST   76 (259)
T ss_pred             CEEEEEECCCCCCCCCCCCCEEEEEECC--EEEEEECCCHH---HHHHHHCCCCHHHCCEEEEECCCHHHHCHHHHHHHH
T ss_conf             4899990689988999964889999999--08999588159---999998199955765899964335766528999999


Q ss_pred             H-------CCCEEECCHHHHHHHCCHHHHHH-HHHCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             0-------79554058438988401234444-320023466667418964783997620123310122247210000012
Q gi|254780758|r   75 L-------SLTIIGPHKDDAAMMGKVDEQAR-LLSIRMNARNASSDRWLQDGDTLLLGTHIFKVFHCPGHSPGHVIYVNF  146 (216)
Q Consensus        75 ~-------~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~gd~i~lg~~~~~vi~tPGHt~g~~~~~~~  146 (216)
T Consensus        77 ~~~~~~~~~l~i~gp~~~~~~l-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~-H~~~s~Gyri~  151 (259)
T PRK00055         77 RSLSGRTEPLTIYGPKGIKEFV-ETLLRASGSHLPYRIA---IHEIDEKTEGVVFDDDGFTVTAFPLD-HSIPCLGYRFE  151 (259)
T ss_pred             HHHCCCCCCEEEEECHHHHHHH-HHHHHHHCCCCCCCEE---EEECCCCCCCEEEECCCEEEEEEECC-CCCCEEEEEEE
T ss_conf             8745999716999177899999-9998850668897256---76325798732896499899999867-99862799999


Q ss_pred             C--CCCCCCCCHHH
Q ss_conf             3--43211110000
Q gi|254780758|r  147 E--NNFAHLGDTLF  158 (216)
Q Consensus       147 ~--~~~lftGD~lf  158 (216)
T Consensus       152 ~~g~~i~ysgDt~~  165 (259)
T PRK00055        152 EKGRKIAYVGDTRP  165 (259)
T ss_pred             ECCCEEEEECCCCC
T ss_conf             68816999527886