HHsearch alignment for GI: 254780758 and conserved domain: TIGR02650
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type; InterPro: IPR013470 All tRNA molecules are synthesised as long precursors with extra sequence at both the 5' and 3' ends, which undergo several processing steps to form the mature tRNA molecule. In many bacteria the tRNA precursors do not contain the CCA sequence which forms the 3' end of the mature tRNA and is essential for aminoacylation. In these organisms ribonucleotide Z cleaves the precursor to form a 3' end to which CCA is added. Proteins in this entry, by contrast are ribonuclease Z enzymes with unusual activity. Organisms containing these proteins include the CCA sequence in the tRNA precursor and ribonuclease Z cleaves the molecule immediately after this sequence producing a mature 3' end. The sequence of these proteins differs considerably from the majority of ribonuclease Z sequences..
Probab=96.31 E-value=0.0014 Score=40.63 Aligned_cols=55 Identities=27% Similarity=0.593 Sum_probs=35.6
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHH---------HHHHCCCEEECCHH
Q ss_conf 49998389999999999997499752999869885210110567---------88607955405843
Q gi|254780758|r 28 EAVVVDPGGDLDIIKDVIQSRNFHVKQIWITHGHVDHVGGAAQL---------KEDLSLTIIGPHKD 85 (216)
Q Consensus 28 ~~ilID~G~~~~~i~~~l~~~~~~i~~Ii~TH~H~DH~gg~~~l---------~~~~~~~i~~~~~~ 85 (216)
T Consensus 19 erilfdaGeGvs---ttlGskvyafkyvflthGhvdhiaGlWGvvnirnnGmGdrekPldvfyP~Gn 82 (277)
T TIGR02650 19 ERILFDAGEGVS---TTLGSKVYAFKYVFLTHGHVDHIAGLWGVVNIRNNGMGDREKPLDVFYPKGN 82 (277)
T ss_pred CEEEEECCCCCC---HHHCCEEEEEEEEEEECCCHHHHCCEEEEEEEECCCCCCCCCCCEEECCCCC
T ss_conf 312543578500---1111101223455432362122100023677521788864575222358865