HHsearch results for GI: 254780758 and protein with PDBid: 1vme_A
>1vme_A Flavoprotein; TM0755, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; HET: MSE; 1.80A {Thermotoga maritima} SCOP: c.23.5.1 d.157.1.3
Probab=99.95 E-value=6.5e-27 Score=174.88 Aligned_cols=165 Identities=15% Similarity=0.181 Sum_probs=117.0
Q ss_pred CCEEEEEECCCCEEEEECCCCC--HHHHHHHHHHC-C-CCEEEEEECCCCCCCCCCCHHHHHHHC--CCEEECCHHHHHH
Q ss_conf 7169999889984999838999--99999999974-9-975299986988521011056788607--9554058438988
Q gi|254780758|r 16 QNCTFLFDEESLEAVVVDPGGD--LDIIKDVIQSR-N-FHVKQIWITHGHVDHVGGAAQLKEDLS--LTIIGPHKDDAAM 89 (216)
Q Consensus 16 ~N~~li~~~~~~~~ilID~G~~--~~~i~~~l~~~-~-~~i~~Ii~TH~H~DH~gg~~~l~~~~~--~~i~~~~~~~~~~ 89 (216)
-|||||.+++ +++|||||.. .+.+++.+++. + .+|++|++||.|+||+||++.|+++++ ++++++ +....+
T Consensus 52 ~NsYLI~~~~--~~vLIDtg~~~~~~~~l~~l~~~i~~~~I~yIi~TH~H~DH~Ggl~~l~~~~~~~~~i~~~-~~~~~~ 128 (410)
T 1vme_A 52 YNAYLVKLNG--ANVLIDGWKGNYAKEFIDALSKIVDPKEITHIIVNHTEPDHSGSLPATLKTIGHDVEIIAS-NFGKRL 128 (410)
T ss_dssp EEEEEEECSS--CEEEECCCCGGGHHHHHHHHHHHSCGGGCCEEECSCCCHHHHTTHHHHHHHHCSCCEEEEC-HHHHHH
T ss_pred EEEEEEEECC--EEEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEC-HHHHHH
T ss_conf 9999999799--5799919975679999999997579767689994939653775499999970999899978-888642
Q ss_pred HCCHHHHHHHHHCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCC
Q ss_conf 4012344443200234666674189647839976201233101222-472100000123432111100000135663467
Q gi|254780758|r 90 MGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHIFKVFHCPG-HSPGHVIYVNFENNFAHLGDTLFRSSIGRTDIL 168 (216)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~i~lg~~~~~vi~tPG-Ht~g~~~~~~~~~~~lftGD~lf~~~~G~~d~~ 168 (216)
+... + .......+++|+++++|+.+++++++|| |+|+++++|. .+++|+||++....++.. +.
T Consensus 129 ~~~~------~-------~~~~~~~v~~g~~l~lG~~~l~~i~~P~~H~p~~~~~y~--~~iLFsgD~~g~~~~~~~-~~ 192 (410)
T 1vme_A 129 LEGF------Y-------GIKDVTVVKDGEEREIGGKKFKFVMTPWLHWPDTMVTYL--DGILFSCDVGGGYLLPEI-LD 192 (410)
T ss_dssp HHHH------H-------CCCCCEECCTTCEEEETTEEEEEEECTTSSSTTCEEEEE--TTEEEEETTTCCSSCCSS-SB
T ss_pred HHHC------C-------CCCCCEEECCCCEEEECCEEEEEEECCCCCCCCCCCEEE--CCEEEECCCCCCCCCCCC-CC
T ss_conf 0101------6-------765316835799998667269999789988899710212--898998863435677873-24
Q ss_pred CCC----------------------HHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 989----------------------999999999998519997899848879888
Q gi|254780758|r 169 HGD----------------------YQQLINSINNKILPLGDEISFVCGHGPNST 201 (216)
Q Consensus 169 ~~d----------------------~~~~~~sl~~~l~~l~~~~~v~PgHG~~tt 201 (216)
..+ ..++.++| +++..|+.++ |+|||||.-.
T Consensus 193 d~~~~~~e~~~~~~~~yy~~i~~p~~~~v~~~L-~ki~~L~i~~-I~PgHGpiir 245 (410)
T 1vme_A 193 DSNESVVERYLPHVTKYIVTVIGHYKNYILEGA-EKLSSLKIKA-LLPGHGLIWK 245 (410)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHGGGHHHHHHHH-HHHHTSCCSE-EEESSSCBBS
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH-HHHHCCCCCE-EECCCCHHHH
T ss_conf 764025678899999998875063289999999-9986599889-9608806776