HHsearch results for GI: 254780758 and protein with PDBid: 2q9u_A
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=99.96 E-value=1.2e-28 Score=185.05 Aligned_cols=170 Identities=16% Similarity=0.115 Sum_probs=122.1
Q ss_pred CCCEEEEEECCCCEEEEECCCCC--HHHHHHHHHHC-C-CCEEEEEECCCCCCCCCCCHHHHHHHC-CCEEECCHHHHHH
Q ss_conf 57169999889984999838999--99999999974-9-975299986988521011056788607-9554058438988
Q gi|254780758|r 15 KQNCTFLFDEESLEAVVVDPGGD--LDIIKDVIQSR-N-FHVKQIWITHGHVDHVGGAAQLKEDLS-LTIIGPHKDDAAM 89 (216)
Q Consensus 15 ~~N~~li~~~~~~~~ilID~G~~--~~~i~~~l~~~-~-~~i~~Ii~TH~H~DH~gg~~~l~~~~~-~~i~~~~~~~~~~ 89 (216)
.-|||||.++ +.+|||||.. .+.+++.+++. + .+|++|++||.|+||+||++.|.++++ ++++++..... .
T Consensus 40 s~NsYLI~~e---~~vLIDtg~~~~~~~~l~~i~~~i~~~~I~~II~TH~H~DH~ggl~~l~~~~p~a~i~~~~~~~~-~ 115 (414)
T 2q9u_A 40 SYNSYFIDDE---CPTVIDSVKYPFAEEWLSRIAACCPLDKIKYVVMNHAEGDHASSLKDHYHKFTNATFVCTKKCQE-H 115 (414)
T ss_dssp EECCEEECSS---SCEEECCCCGGGHHHHHHHHHHHSCGGGCCEEECSCCSGGGTTTHHHHGGGSTTCEEEECHHHHH-H
T ss_pred EEEEEEEECC---CEEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEECHHHHH-H
T ss_conf 7999999669---88999099801699999999975698779989969096647602999998788987997589998-8
Q ss_pred HCCHHHHHHHHHCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCHHHHCC-CCCCCC
Q ss_conf 401234444320023466667418964783997620123310122-247210000012343211110000013-566346
Q gi|254780758|r 90 MGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHIFKVFHCP-GHSPGHVIYVNFENNFAHLGDTLFRSS-IGRTDI 167 (216)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~i~lg~~~~~vi~tP-GHt~g~~~~~~~~~~~lftGD~lf~~~-~G~~d~ 167 (216)
+... + .......+.+++++++.+|+.+++++++| |||+|++++|.+++++||+||++.... .+....
T Consensus 116 ~~~~------~-----~~~~~~~~~~~~g~~l~lg~~~l~~i~~p~gH~~~~~~~y~~~~~iLfsGD~~~~~~~~~~~~~ 184 (414)
T 2q9u_A 116 LKIL------Y-----GMEKATWLIVDDKYTLKIGKRTLKFIPVPLLHWPDSTFTYCPEDKILFSNDGFGQHYATSRRWA 184 (414)
T ss_dssp HHHH------H-----CCTTCCEEECCTTCCEECSSCEEEEEECTTSSSTTCEEEEETTTTEEEEETTTCCCCCCSCCBG
T ss_pred HHHH------C-----CCCCCCEEEECCCCEEEECCEEEEEECCCCCCCCCCEEEEECCCCCEEECCCCCCCCCCCCCCC
T ss_conf 8874------3-----8986525871589889756558999703689868978999989896894574566788876765
Q ss_pred CC-------------------CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 79-------------------89999999999998519997899848879888
Q gi|254780758|r 168 LH-------------------GDYQQLINSINNKILPLGDEISFVCGHGPNST 201 (216)
Q Consensus 168 ~~-------------------~d~~~~~~sl~~~l~~l~~~~~v~PgHG~~tt 201 (216)
.. ....++.++| ++|..|+.++ |+|||||...
T Consensus 185 ~~~~~~~~~~~~~~y~~~~~~p~~~~~~~~L-ekl~~Ldi~~-I~PgHGpi~r 235 (414)
T 2q9u_A 185 DECDVSHVMHLFKEYTANILGLFSAQMRKAL-EVASTVEIKY-ILSAHGVSWR 235 (414)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTCHHHHHHHH-HHHHTSCCSE-EEESSSCBEE
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHCCCCCE-EEECCCCEEC
T ss_conf 3234266799999998773022399999999-9975789789-9808967244