HHsearch results for GI: 254780758 and protein with PDBid: 2xr1_A
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei}
Probab=99.69 E-value=4.4e-18 Score=123.55 Aligned_cols=151 Identities=15% Similarity=0.135 Sum_probs=95.7
Q ss_pred EEEEEECCCCC---CCEEEEEECCCCEEEEECCCCCHHH---H-HHH-HHH-CC-CCEEEEEECCCCCCCCCCCHHHHHH
Q ss_conf 59999708765---7169999889984999838999999---9-999-997-49-9752999869885210110567886
Q gi|254780758|r 5 SFHIVQVTPFK---QNCTFLFDEESLEAVVVDPGGDLDI---I-KDV-IQS-RN-FHVKQIWITHGHVDHVGGAAQLKED 74 (216)
Q Consensus 5 ~~~~i~v~~~~---~N~~li~~~~~~~~ilID~G~~~~~---i-~~~-l~~-~~-~~i~~Ii~TH~H~DH~gg~~~l~~~ 74 (216)
.+++.++|+++ -|||++..++ ..+|+|||..... . ... +-. .. .++++|++||+|.||+|++++|.+.
T Consensus 183 ~irit~LGG~~EIGrsc~lv~~~~--~~ILlDcG~~~~~~~~~~~~~~~p~~~~l~~iDAV~LTHaH~DH~G~Lp~L~k~ 260 (640)
T 2xr1_A 183 WVRVTALGGCKEVGRSCFLLSTPE--SRILIDCGVNVGSDENMTPYLYVPEVFPLNQIDAVIVTHAHLDHQGLVPLLFKY 260 (640)
T ss_dssp CCEEEEEECSSSSBCCEEEEECSS--CEEEECCCCBCSSCSSCCCCTTSTTTCSGGGCCEEECCSSCHHHHTTHHHHHHT
T ss_pred EEEEEEECCCCCCCCCEEEEEECC--CEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCEEEECCCCHHHHCCHHHHHHC
T ss_conf 089999478886152779999689--699998888878523357443557768730188999888976763865999852
Q ss_pred -HCCCEEECCHHHHHHHCCHHHHHHHHHCCCCCCC---------CCCEEEECCCCEEEEE-CCCCCCCCCCCCCCCCCCC
Q ss_conf -0795540584389884012344443200234666---------6741896478399762-0123310122247210000
Q gi|254780758|r 75 -LSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARN---------ASSDRWLQDGDTLLLG-THIFKVFHCPGHSPGHVIY 143 (216)
Q Consensus 75 -~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~~gd~i~lg-~~~~~vi~tPGHt~g~~~~ 143 (216)
+.+|+|++......+..................+ ....+.+..++.+.++ +.+++++.+ ||++|+.+.
T Consensus 261 g~~~PIY~T~~T~~L~~~ll~d~~~~~~~~~~~~~y~~~~i~~~~~~~i~l~y~e~~~i~~di~Vt~~~a-GHslGsA~~ 339 (640)
T 2xr1_A 261 GYEGPVYCTPPTRDLMVLLQLDYIDVAAKEGKKIPYESGMVAKTLKHTIPLDYEEVTDIAPDIKLTFHNA-GHILGSAIS 339 (640)
T ss_dssp TCCSCEEECHHHHHHHHHHHHHHHHHHHHHTCCCCSCHHHHHHHHHTEEECCTTCCEEEETTEEEEEEEC-SSSTTCEEE
T ss_pred CCCCCEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHEEECCCCCEEEECCCCEEEEEEC-CCCCCCCCE
T ss_conf 8998899777999999999999998766423468878899998885068558997699579717999726-877865005
Q ss_pred C--C--CCCCCCCCCCHHH
Q ss_conf 0--1--2343211110000
Q gi|254780758|r 144 V--N--FENNFAHLGDTLF 158 (216)
Q Consensus 144 ~--~--~~~~~lftGD~lf 158 (216)
+ + ...+++||||.-+
T Consensus 340 ~~~I~~g~~~IvyTGDfr~ 358 (640)
T 2xr1_A 340 HFHIGDGLHNVVFTGDYKY 358 (640)
T ss_dssp EEEETTTTEEEEECCSCCS
T ss_pred EEEEEECCEEEEECCCCCC
T ss_conf 7899508826997378566