HHsearch results for GI: 254780758 and protein with PDBid: 3bk2_A
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus HB27} PDB: 3bk1_A*
Probab=99.79 E-value=3e-19 Score=130.32 Aligned_cols=146 Identities=22% Similarity=0.298 Sum_probs=104.3
Q ss_pred EEEEEECCCCC---CCEEEEEECCCCEEEEECCCCC---HH-----HH---HHHHHHCCCCEEEEEECCCCCCCCCCCHH
Q ss_conf 59999708765---7169999889984999838999---99-----99---99999749975299986988521011056
Q gi|254780758|r 5 SFHIVQVTPFK---QNCTFLFDEESLEAVVVDPGGD---LD-----II---KDVIQSRNFHVKQIWITHGHVDHVGGAAQ 70 (216)
Q Consensus 5 ~~~~i~v~~~~---~N~~li~~~~~~~~ilID~G~~---~~-----~i---~~~l~~~~~~i~~Ii~TH~H~DH~gg~~~ 70 (216)
+++++|+|..+ -|||++..++ +.+|||||.. .+ .+ ..+++++..++++|++||+|.||+|++++
T Consensus 16 ~i~i~pLGG~~EIG~n~~~~e~~~--~~iliD~G~~f~~~~~~gid~iiPd~~~l~~~~~~i~ai~lTHaH~DH~Galp~ 93 (562)
T 3bk2_A 16 HVEIIPLGGMGEIGKNITVFRFRD--EIFVLDGGLAFPEEGMPGVDLLIPRVDYLIEHRHKIKAWVLTHGHEDHIGGLPF 93 (562)
T ss_dssp CEEEEEEESBSBSSCCEEEEEETT--EEEEECCCCBCCCTTSTTCCEEEECCHHHHHTGGGEEEEECCCCCHHHHTTHHH
T ss_pred EEEEEECCCCCHHHHCEEEEEECC--EEEEEECCCCCCCCCCCCCCEEECCCHHHHHCCCCCEEEEECCCCHHHHCCHHH
T ss_conf 289996688890451679999999--599995899989756889758936968987376672599979985565377287
Q ss_pred HHHH-----HCCCEEECCHHHHHHHCCHHHHHHHHHCCCCCCCCCCEEEECCCCEEEEEC-CCCCCCCCCCCCCCCCCCC
Q ss_conf 7886-----079554058438988401234444320023466667418964783997620-1233101222472100000
Q gi|254780758|r 71 LKED-----LSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGT-HIFKVFHCPGHSPGHVIYV 144 (216)
Q Consensus 71 l~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gd~i~lg~-~~~~vi~tPGHt~g~~~~~ 144 (216)
|... +.+|+|+++.+...+.....+. . . .........+..++.+.+|+ .+++++++.+|.||+++++
T Consensus 94 Ll~~~~~~~~~~PIY~T~~T~~Ll~~kl~e~----~--~-~~~~~~~~~i~~~~~~~~g~~f~v~~~~v~hsipga~~~~ 166 (562)
T 3bk2_A 94 LLPMIFGKESPVPIYGARLTLGLLRGKLEEF----G--L-RPGAFNLKEISPDDRIQVGRYFTLDLFRMTHSIPDNSGVV 166 (562)
T ss_dssp HHHHHHCSCCCSEEEEEHHHHHHHHHHHHHT----T--C-CSTTSEEEEECTTCEEEETTTEEEEEEECCCSSSSCEEEE
T ss_pred HHHHHCCCCCCCCEECCHHHHHHHHHHHHHC----C--C-CCCCCCEEEECCCCEEEEEEEEEEEEEECCCCCCCCEEEE
T ss_conf 8875214568858887999999999999972----9--9-8555531473699659982118999885367777646999
Q ss_pred C--CCCCCCCCCCHHHH
Q ss_conf 1--23432111100000
Q gi|254780758|r 145 N--FENNFAHLGDTLFR 159 (216)
Q Consensus 145 ~--~~~~~lftGD~lf~ 159 (216)
+ ++.+++||||.-+.
T Consensus 167 i~t~~g~IlyTGDfr~~ 183 (562)
T 3bk2_A 167 IRTPIGTIVHTGDFKLD 183 (562)
T ss_dssp EEETTEEEEECCSCCCC
T ss_pred EEECCEEEEEEECCCCC
T ss_conf 98299789998255577