RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780758|ref|YP_003065171.1| hypothetical protein
CLIBASIA_03225 [Candidatus Liberibacter asiaticus str. psy62]
(216 letters)
>gnl|CDD|30837 COG0491, GloB, Zn-dependent hydrolases, including glyoxylases
[General function prediction only].
Length = 252
Score = 121 bits (304), Expect = 1e-28
Identities = 67/217 (30%), Positives = 107/217 (49%), Gaps = 6/217 (2%)
Query: 1 MSKLSFHIVQVTPFKQNCTFLFDEESLEAVVVDPG---GDLDIIKDVIQSRNFHVKQIWI 57
+ ++ + V P N +L + AV++D G D + + + + + V I +
Sbjct: 9 LDGITAFPIGVGPLSGNSVYLLVDGEGGAVLIDTGLGDADAEALLEALAALGLDVDAILL 68
Query: 58 THGHVDHVGGAAQLKEDLS-LTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQ 116
THGH DH+GGAA LKE +I P + + ++ +A + + A AS R L+
Sbjct: 69 THGHFDHIGGAAVLKEAFGAAPVIAPAEVPLLLREEILRKAGVTAEAYAAPGASPLRALE 128
Query: 117 DGDTLLLGTHIFKVFHCPGHSPGHVIYVNFENNFAHLGDTLF--RSSIGRTDILHGDYQQ 174
DGD L LG +V H PGH+PGH++++ + GDTLF + +GR D+ GD Q
Sbjct: 129 DGDELDLGGLELEVLHTPGHTPGHIVFLLEDGGVLFTGDTLFAGDTGVGRLDLPGGDAAQ 188
Query: 175 LINSINNKILPLGDEISFVCGHGPNSTIGRERRLNPF 211
L+ S+ +L L + + GHGP+ R L
Sbjct: 189 LLASLRRLLLLLLPDTLVLPGHGPDEYDPAARALALT 225
>gnl|CDD|36032 KOG0814, KOG0814, KOG0814, Glyoxylase [General function prediction
only].
Length = 237
Score = 88.1 bits (218), Expect = 2e-18
Identities = 58/213 (27%), Positives = 88/213 (41%), Gaps = 37/213 (17%)
Query: 16 QNCTFLF---DEESLEAVVVDP-----GGDLDIIKDVIQSRNFHVKQIWITHGHVDHVGG 67
++ T+ + D ++ +AV++DP D +IKD+ + TH H DH+ G
Sbjct: 18 ESSTYTYLLGDHKTGKAVIIDPVLETVSRDAQLIKDL----GLDLIYALNTHVHADHITG 73
Query: 68 AAQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHI 127
LK L S+ +A A +D L+DGD + +G
Sbjct: 74 TGLLKTLLP---------------------GCKSVISSASGAKADLHLEDGDIIEIGGLK 112
Query: 128 FKVFHCPGHSPGHVIYVNFENNFAHLGDTLFRSSIGRTDILHGDYQQLINSINNKILPLG 187
+V PGH+ G V YV + A GD L GRTD G L S+++KI L
Sbjct: 113 LEVRATPGHTNGCVTYVEHDLRMAFTGDALLIRGCGRTDFQQGCPASLYESVHSKIFTLP 172
Query: 188 DEISFVCGHGPN----STIGRERRLNPFLKSNI 216
++ H ST+ E+ LNP L +
Sbjct: 173 EDYLIYPAHDYKGFLVSTVWEEKNLNPRLTKSK 205
>gnl|CDD|144377 pfam00753, Lactamase_B, Metallo-beta-lactamase superfamily.
Length = 148
Score = 77.8 bits (191), Expect = 2e-15
Identities = 40/151 (26%), Positives = 62/151 (41%), Gaps = 8/151 (5%)
Query: 11 VTPFKQNCTFLFDEESLEAVVVDPGGDLDIIKDVIQSRNFH---VKQIWITHGHVDHVGG 67
N + + A+++D G D ++ + + I +TH H DH+GG
Sbjct: 1 GGGVGSNSYLVEGDG--GAILIDTGLGADDALLLLAALGLDPKDIDAIILTHAHADHIGG 58
Query: 68 AAQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHI 127
+LKE ++ +D AA++ + A L R D L+ GD +L G +
Sbjct: 59 LPELKEATPAPVVAAPEDAAALLRLGLDDAEL---RKLVDVLPPDVDLEGGDGILGGGTL 115
Query: 128 FKVFHCPGHSPGHVIYVNFENNFAHLGDTLF 158
V PGH PGHV+ GD LF
Sbjct: 116 LFVTPHPGHGPGHVVVYLPGGKVLFTGDLLF 146
>gnl|CDD|36031 KOG0813, KOG0813, KOG0813, Glyoxylase [General function prediction
only].
Length = 265
Score = 67.7 bits (165), Expect = 2e-12
Identities = 47/180 (26%), Positives = 78/180 (43%), Gaps = 27/180 (15%)
Query: 23 DEESLEAVVVDPGGDLDII--KDVIQSRNFHVKQIWITHGHVDHVGGAAQLKEDLSLTII 80
+++++A +VDP +I + N + I TH H DH GG +K +
Sbjct: 21 GDKTIDADLVDPAEPEYVIPSLKKLDDENRRLTAILTTHHHYDHSGGNEDIKRE------ 74
Query: 81 GPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHIFKVFHCPGHSPGH 140
D ++G + R R L+DG+T+ +G + H PGH+ GH
Sbjct: 75 --IPYDIKVIG-----------GADDRIPGITRGLKDGETVTVGGLEVRCLHTPGHTAGH 121
Query: 141 VIYVNFENNFAHL---GDTLFRSSIGRTDILHGDYQQLINSINNKILPLGDEISFVCGHG 197
+ Y E+ GDTLF + GR G +Q+ +S+ N+++ L D+ GH
Sbjct: 122 ICYYVTESTGERAIFTGDTLFGAGCGRF--FEGTAEQMDSSL-NELIALPDDTRIYPGHE 178
>gnl|CDD|30940 COG0595, COG0595, Predicted hydrolase of the metallo-beta-lactamase
superfamily [General function prediction only].
Length = 555
Score = 36.4 bits (84), Expect = 0.007
Identities = 35/140 (25%), Positives = 51/140 (36%), Gaps = 11/140 (7%)
Query: 17 NCTFLFDEESLEAVVVDPGGDLDIIKDVIQSRNFH-VKQIWITHGHVDHVGGAAQLKEDL 75
+ F E+ L G DL I N VK I++THGH DH+G L + +
Sbjct: 37 DAGLKFPEDDL------LGVDLIIPDFSYLEENKDKVKGIFLTHGHEDHIGALPYLLKQV 90
Query: 76 SLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHIFKVFHCPG 135
I AA++ + ++ L ++ G + F V H
Sbjct: 91 LFAPIYASPLTAALIKEKLKEHGLFKNENELHEVKPGSEIKFGSFEV---EFFPVTHSIP 147
Query: 136 HSPGHVIYVNFENNFAHLGD 155
S G VI E N + GD
Sbjct: 148 DSLGIVIKTP-EGNIVYTGD 166
>gnl|CDD|36359 KOG1144, KOG1144, KOG1144, Translation initiation factor 5B
(eIF-5B) [Translation, ribosomal structure and
biogenesis].
Length = 1064
Score = 31.9 bits (72), Expect = 0.14
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 137 SPGHVIYVNFENNFAHLGDTLFRSSIGRTDILHGDYQQLINSINN 181
+PGH + N + + L D +I DI+HG Q I SIN
Sbjct: 547 TPGHESFTNLRSRGSSLCDL----AILVVDIMHGLEPQTIESINL 587
>gnl|CDD|31428 COG1235, PhnP, Metal-dependent hydrolases of the beta-lactamase
superfamily I [General function prediction only].
Length = 269
Score = 32.0 bits (72), Expect = 0.14
Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 7/78 (8%)
Query: 26 SLEAVVVDPGGDLDIIKDVIQSRNFHVKQIWITHGHVDHVGGAAQLKEDLSLTI-----I 80
++ +++D G D+ ++ + I +TH H DH+ G L+ +L I
Sbjct: 39 GVKTLLIDAG--PDLRDQGLRLGVSDLDAILLTHEHSDHIQGLDDLRRAYTLPIYVNPGT 96
Query: 81 GPHKDDAAMMGKVDEQAR 98
++G R
Sbjct: 97 LRASTSDRLLGGFPYLFR 114
>gnl|CDD|32165 COG1982, LdcC, Arginine/lysine/ornithine decarboxylases [Amino acid
transport and metabolism].
Length = 557
Score = 30.7 bits (69), Expect = 0.32
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 131 FHCPGHSPGHVIYVNFENNFAHLGDTLFRSSIGRTDILHGD 171
FH PGH G + +F G+ LFR+ + D
Sbjct: 26 FHVPGHKGGAGFRKSEFYDF--FGENLFRADVSEADGELDS 64
>gnl|CDD|146848 pfam04412, DUF521, Protein of unknown function (DUF521). Family of
hypothetical proteins.
Length = 397
Score = 30.2 bits (69), Expect = 0.41
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 6 FHIVQVTPFKQNCTFLFDEESLEAVVVDPGGDLDIIKDVIQSRNFHV 52
FH+V VTP + T LE + + DL + + + + V
Sbjct: 244 FHVVGVTP--EAPTLEAAFGGLERITITA-ADLAAVWEELNATGEEV 287
>gnl|CDD|31429 COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold
involved in RNA processing [Translation, ribosomal
structure and biogenesis].
Length = 427
Score = 29.6 bits (66), Expect = 0.64
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 28 EAVVVDPGGDLDIIKDV--IQSRNFHVKQIWITHGHVDHVGGAAQLKED 74
+++D G + V + +TH H+DH+G L +
Sbjct: 24 TRILLDCGLFPGDPSPERPLLPPFPKVDAVLLTHAHLDHIGALPYLVRN 72
>gnl|CDD|31427 COG1234, ElaC, Metal-dependent hydrolases of the beta-lactamase
superfamily III [General function prediction only].
Length = 292
Score = 29.6 bits (66), Expect = 0.72
Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 7/40 (17%)
Query: 52 VKQIWITHGHVDHVGGAAQLKEDLS-------LTIIGPHK 84
+ I+ITH H DH+ G L S L I GP
Sbjct: 54 IDAIFITHLHGDHIAGLPGLLVSRSFRGRREPLKIYGPPG 93
>gnl|CDD|111050 pfam02112, PDEase_II, cAMP phosphodiesterases class-II.
Length = 323
Score = 29.0 bits (65), Expect = 0.89
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 51 HVKQIWITHGHVDHVGGA 68
+K ITH H+DHV G
Sbjct: 79 RIKNYLITHSHLDHVCGL 96
>gnl|CDD|32402 COG2220, COG2220, Predicted Zn-dependent hydrolases of the
beta-lactamase fold [General function prediction only].
Length = 258
Score = 28.6 bits (63), Expect = 1.3
Identities = 25/126 (19%), Positives = 38/126 (30%), Gaps = 13/126 (10%)
Query: 55 IWITHGHVDHVG--GAAQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSD 112
I ITH H DH+ L+ + + ++ P A + D + +
Sbjct: 56 ILITHDHYDHLDDETLIALRTNKAPVVVVP--LGAGDLLIRDGVEAERVHELGWGDVIE- 112
Query: 113 RWLQDGDTLLLGTHIFKVFHCPGHSP----GHVIYVNFEN--NFAHLGDTLFRSSIGRTD 166
L D + + + H PG V YV H GDT + I
Sbjct: 113 --LGDLEITAVPAYHVSARHLPGRGIRPTGLWVGYVIETPGGRVYHAGDTGYLFLIIEEL 170
Query: 167 ILHGDY 172
D
Sbjct: 171 DGPVDV 176
>gnl|CDD|30788 COG0439, AccC, Biotin carboxylase [Lipid metabolism].
Length = 449
Score = 27.9 bits (62), Expect = 2.1
Identities = 17/77 (22%), Positives = 27/77 (35%), Gaps = 4/77 (5%)
Query: 28 EAVVVDPGGDLDIIKDVIQSRNFHVKQ----IWITHGHVDHVGGAAQLKEDLSLTIIGPH 83
EAV + P D ++ + I +G + A+ + LT IGP
Sbjct: 47 EAVCIGPAPSADSYLNIDAIIAAAEETGADAIHPGYGFLSENAAFAEACAEAGLTFIGPS 106
Query: 84 KDDAAMMGKVDEQARLL 100
+ MG RL+
Sbjct: 107 AEAIRRMGDKITARRLM 123
>gnl|CDD|39474 KOG4273, KOG4273, KOG4273, Uncharacterized conserved protein
[Function unknown].
Length = 418
Score = 27.6 bits (60), Expect = 2.5
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 58 THGHVDHVGGAAQLKEDLSLTIIGPHKDDAAMM 90
T H D GGA+Q + +++ P+K DA +
Sbjct: 298 TESHADAGGGASQENLHVENSMVKPNKTDAELD 330
>gnl|CDD|31430 COG1237, COG1237, Metal-dependent hydrolases of the
beta-lactamase superfamily II [General function
prediction only].
Length = 259
Score = 27.6 bits (61), Expect = 3.1
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 24 EESLEAVVVDPGGDLDIIKDVIQSRNFH---VKQIWITHGHVDHVGG 67
E+ ++ D G D D++ + + + ++HGH DH GG
Sbjct: 28 EDEGTRILFDTGTDSDVLLHNARLLGVDLRDIDAVVLSHGHYDHTGG 74
>gnl|CDD|36136 KOG0918, KOG0918, KOG0918, Selenium-binding protein [Inorganic ion
transport and metabolism].
Length = 476
Score = 27.2 bits (60), Expect = 3.7
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 149 NFAHLGDTLFRSSIGRTDILHGDYQQLINSINNKILPLGDEISFVCGHGPNSTIG 203
N A + D L+ S + G+ +Q I+ + +LPL EI F+ H P+ G
Sbjct: 218 NPADVEDGLYGSHLHVYQWSPGELKQTIDLGDTGLLPL--EIRFL--HNPSKATG 268
>gnl|CDD|145719 pfam02718, Herpes_UL31, Herpesvirus UL31-like protein. This is a
family of Herpesvirus proteins including UL31, UL53, and
the product of ORF 69 in some strains. The proteins in
this family have no known function.
Length = 263
Score = 27.2 bits (61), Expect = 3.8
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 124 GTHIFKVFHCPGHSPGHVIYVNFENNFAHLGDTLFR 159
G F + G ++Y+ F HL +T R
Sbjct: 161 GHDDFPILFDAG-GGKLMMYLVFPGKSLHLHETCLR 195
>gnl|CDD|37332 KOG2121, KOG2121, KOG2121, Predicted metal-dependent hydrolase
(beta-lactamase superfamily) [General function
prediction only].
Length = 746
Score = 26.9 bits (59), Expect = 4.4
Identities = 7/34 (20%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 38 LDIIKDVIQSRNFHVKQIWITHGHVDHVGGAAQL 71
++ + ++ ++ I+I+H H DH G +
Sbjct: 492 VENVDTALRK----LRAIFISHLHADHHLGLISV 521
>gnl|CDD|35493 KOG0272, KOG0272, KOG0272, U4/U6 small nuclear ribonucleoprotein
Prp4 (contains WD40 repeats) [RNA processing and
modification].
Length = 459
Score = 26.9 bits (59), Expect = 5.0
Identities = 13/67 (19%), Positives = 22/67 (32%)
Query: 60 GHVDHVGGAAQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGD 119
GH VG A D L + D + K+ ++ L + + S + G
Sbjct: 215 GHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGK 274
Query: 120 TLLLGTH 126
L +
Sbjct: 275 FLGTASF 281
>gnl|CDD|32198 COG2015, COG2015, Alkyl sulfatase and related hydrolases [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 655
Score = 26.4 bits (58), Expect = 5.4
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 8/71 (11%)
Query: 3 KLSFHIVQVTPFK-QNCTFLFDEESLEAVVVDPGGDLDIIKDVIQSRNFH-----VKQIW 56
K++ I QV F N TF+ + +V+DP + K + N H V +
Sbjct: 112 KVTDGIYQVRGFDISNITFVEGDTGW--IVIDPLVTPETAKAALDLYNQHRGQRPVVAVI 169
Query: 57 ITHGHVDHVGG 67
TH H DH GG
Sbjct: 170 YTHSHSDHFGG 180
>gnl|CDD|33986 COG4263, NosZ, Nitrous oxide reductase [Energy production and
conversion].
Length = 637
Score = 26.5 bits (58), Expect = 6.0
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 168 LHGDYQQLINSINNKILPLGDEISFVCGHGPNSTIGRERRLNPF 211
LH + QLI+ +K++ + D F H P I R + PF
Sbjct: 466 LHPENDQLIDISGDKMVLVHDGPVFAEPHDP--IIVWRRDIPPF 507
>gnl|CDD|144757 pfam01276, OKR_DC_1, Orn/Lys/Arg decarboxylase, major domain.
Length = 417
Score = 26.3 bits (58), Expect = 6.1
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 131 FHCPGHSPGHVIYVNFENNFAH--LGDTLFRSSIGRTDILHGD 171
FHCPGH G + + G+ LFR+ + D+ GD
Sbjct: 18 FHCPGHQGGTGFRKHPAGRLFYDFFGENLFRADLCIADVELGD 60
>gnl|CDD|133367 cd04167, Snu114p, Snu114p subfamily. Snu114p is one of several
proteins that make up the U5 small nuclear
ribonucleoprotein (snRNP) particle. U5 is a component
of the spliceosome, which catalyzes the splicing of
pre-mRNA to remove introns. Snu114p is homologous to
EF-2, but typically contains an additional N-terminal
domain not found in Ef-2. This protein is part of the
GTP translation factor family and the Ras superfamily,
characterized by five G-box motifs.
Length = 213
Score = 26.0 bits (58), Expect = 7.1
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 24/64 (37%)
Query: 94 DEQARLLSIRMNARNASSDRWLQDGDTLLL-----GTHIFKVFHCPGHSPGHVIYVNFEN 148
DEQ R +SI+ + +L+L +++F + PGH VNF +
Sbjct: 46 DEQERGISIKSS------------PISLVLPDSKGKSYLFNIIDTPGH-------VNFMD 86
Query: 149 NFAH 152
A
Sbjct: 87 EVAA 90
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.322 0.140 0.427
Gapped
Lambda K H
0.267 0.0787 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,697,219
Number of extensions: 138057
Number of successful extensions: 315
Number of sequences better than 10.0: 1
Number of HSP's gapped: 308
Number of HSP's successfully gapped: 30
Length of query: 216
Length of database: 6,263,737
Length adjustment: 90
Effective length of query: 126
Effective length of database: 4,318,927
Effective search space: 544184802
Effective search space used: 544184802
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (24.9 bits)