RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780758|ref|YP_003065171.1| hypothetical protein
CLIBASIA_03225 [Candidatus Liberibacter asiaticus str. psy62]
(216 letters)
>2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella
enterica}
Length = 210
Score = 200 bits (509), Expect = 2e-52
Identities = 86/208 (41%), Positives = 135/208 (64%), Gaps = 1/208 (0%)
Query: 6 FHIVQVTPFKQNCTFLFDEESLEAVVVDPGGDLDIIKDVIQSRNFHVKQIWITHGHVDHV 65
+ I+ VT F QNC+ ++ E++ A +VDPGGD + IK + + + QI +THGH+DHV
Sbjct: 3 YRIIPVTAFSQNCSLIWCEQTRLAALVDPGGDAEKIKQEVDASGVTLMQILLTHGHLDHV 62
Query: 66 GGAAQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGT 125
G A++L + + +IGP K+D + + Q+R+ + + DRWL DGD + +G
Sbjct: 63 GAASELAQHYGVPVIGPEKEDEFWLQGLPAQSRMFG-LDECQPLTPDRWLNDGDRVSVGN 121
Query: 126 HIFKVFHCPGHSPGHVIYVNFENNFAHLGDTLFRSSIGRTDILHGDYQQLINSINNKILP 185
+V HCPGH+PGHV++ + ++ GD +F+ +GR+D GD+ QLI++I K+LP
Sbjct: 122 VTLQVLHCPGHTPGHVVFFDEQSQLLISGDVIFKGGVGRSDFPRGDHTQLIDAIKRKLLP 181
Query: 186 LGDEISFVCGHGPNSTIGRERRLNPFLK 213
LGD+++F+ GHGP ST+G ER NPFL+
Sbjct: 182 LGDDVTFIPGHGPLSTLGYERLHNPFLQ 209
>2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A
{Thermus thermophilus}
Length = 207
Score = 130 bits (327), Expect = 2e-31
Identities = 69/206 (33%), Positives = 99/206 (48%), Gaps = 9/206 (4%)
Query: 7 HIVQVTPFKQNCTFLFDEESLEAVVVDPGGDLDIIKDVIQSRNFHVKQIWITHGHVDHVG 66
V + P ++N + E V++DPG + + + + Q+ I +TH H DHVG
Sbjct: 4 FPVTLGPLQENAYLVETGE--GPVLIDPGDEPEKLLALFQTTGLIPLAILLTHAHFDHVG 61
Query: 67 GAAQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTH 126
A L E L L + H D + D AR + + + R L++G
Sbjct: 62 AVAPLVEALDLPVY-LHPLDLPLYEGADLAARAWGLAIP-KPPLPVRPLEEGMR----LF 115
Query: 127 IFKVFHCPGHSPGHVIYVNFENNFAHLGDTLFRSSIGRTDILHGDYQQLINSINNKILPL 186
F+V H PGHSPGHV + + E GD LFR S+GR D+ D + L S+ ++L L
Sbjct: 116 GFQVLHLPGHSPGHVAFYDPEGAQVFSGDLLFRGSVGRYDLPGADPKALFASL-KRLLSL 174
Query: 187 GDEISFVCGHGPNSTIGRERRLNPFL 212
E GHGP +T+G E R NPFL
Sbjct: 175 PPETRVHPGHGPGTTLGLEARTNPFL 200
>2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein,
SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A
2q0i_A 3dh8_A*
Length = 303
Score = 108 bits (270), Expect = 1e-24
Identities = 39/217 (17%), Positives = 68/217 (31%), Gaps = 23/217 (10%)
Query: 3 KLSFHIVQVTPFKQNCTFLFDEESLEAVVVDPG--GDLDIIKDVIQSRNF---HVKQIWI 57
+L + + + L E+ +V+ G D +++ + V I
Sbjct: 11 QLDDDLCLLGDVQVPVFLLRLGEA-SWALVEGGISRDAELVWADLCRWVADPSQVHYWLI 69
Query: 58 THGHVDHVGGAAQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASS------ 111
TH H DH G L L + + + + A
Sbjct: 70 THKHYDHCGLLPYLCPRLPNVQVLASERTCQAWKSESAVRVVERLNRQLLRAEQRLPEAC 129
Query: 112 ------DRWLQDGDTLLLG-THIFKVFHCPGHSPGHVIYVNFENNFAHLGDTLFRSSIGR 164
R + DG+ L LG H +V GHS HV++ + GD L
Sbjct: 130 AWDALPVRAVADGEWLELGPRHRLQVIEAHGHSDDHVVFYDVRRRRLFCGDALGEFDEAE 189
Query: 165 TDI---LHGDYQQLINSINNKILPLGDEISFVCGHGP 198
+ D + + S+ ++ L + + GHG
Sbjct: 190 GVWRPLVFDDMEAYLESL-ERLQRLPTLLQLIPGHGG 225
>1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase);
metallo-hydrolase; HET: GTT GBP; 1.45A {Homo sapiens}
SCOP: d.157.1.2 PDB: 1qh3_A*
Length = 260
Score = 106 bits (266), Expect = 3e-24
Identities = 46/251 (18%), Positives = 79/251 (31%), Gaps = 66/251 (26%)
Query: 7 HIVQVTPFKQNCTFL-FDEESLEAVVVDPGGDLDIIKDVIQSRNFHVKQIWITHGHVDHV 65
+ + N +L D+E+ EA +VDP ++ D + + + TH H DH
Sbjct: 2 KVEVLPALTDNYMYLVIDDETKEAAIVDPVQPQKVV-DAARKHGVKLTTVLTTHHHWDHA 60
Query: 66 GGAAQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGT 125
GG +L + S + D + + TL +G+
Sbjct: 61 GGNEKLVKLESGLKVYGGDDRIGAL---------------------THKITHLSTLQVGS 99
Query: 126 HIFKVFHCPGHSPGHVIYVNFENNFAH-----LGDTLFRSSIGRTDILHGDYQQLINSIN 180
K P H+ GH+ Y + + GDTLF + G+ G ++ ++
Sbjct: 100 LNVKCLATPCHTSGHICYFVSKPGGSEPPAVFTGDTLFVAGCGKFY--EGTADEMCKALL 157
Query: 181 NKILPLGDEISFVCGHGPN------------------------------------STIGR 204
+ L + CGH ST+
Sbjct: 158 EVLGRLPPDTRVYCGHEYTINNLKFARHVEPGNAAIREKLAWAKEKYSIGEPTVPSTLAE 217
Query: 205 ERRLNPFLKSN 215
E NPF++
Sbjct: 218 EFTYNPFMRVR 228
>1xm8_A Glyoxalase II; structural genomics, protein structure initiative,
CESG, AT2G31350, metallo-hydrolase, zinc/iron binuclear
center; 1.74A {Arabidopsis thaliana} SCOP: d.157.1.2
PDB: 2q42_A
Length = 254
Score = 106 bits (265), Expect = 4e-24
Identities = 62/246 (25%), Positives = 94/246 (38%), Gaps = 60/246 (24%)
Query: 7 HIVQVTPFKQNCTFL-FDEESLEAVVVDPGGDLDIIKDVIQSRNFHVKQIWITHGHVDHV 65
I V K N ++ DE++ VVDP + + I D ++ ++ I TH H DH
Sbjct: 2 QIELVPCLKDNYAYILHDEDTGTVGVVDPS-EAEPIIDSLKRSGRNLTYILNTHHHYDHT 60
Query: 66 GGAAQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGT 125
GG +LK+ +IG D + G D L+DGD +
Sbjct: 61 GGNLELKDRYGAKVIGSAMDKDRIPGI-------------------DMALKDGDKWMFAG 101
Query: 126 HIFKVFHCPGHSPGHVIYVNFENNFAHLGDTLFRSSIGRTDILHGDYQQLINSINNKILP 185
H V PGH+ GH+ + GDT+F S G+ + G +Q++ S+ KI
Sbjct: 102 HEVHVMDTPGHTKGHISLYFPGSRAIFTGDTMFSLSCGK--LFEGTPKQMLASL-QKITS 158
Query: 186 LGDEISFVCGHGPN------------------------------------STIGRERRLN 209
L D+ S CGH +T+ E+ N
Sbjct: 159 LPDDTSIYCGHEYTLSNSKFALSLEPNNEVLQSYAAHVAELRSKKLPTIPTTVKMEKACN 218
Query: 210 PFLKSN 215
PFL+S+
Sbjct: 219 PFLRSS 224
>3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance,
hydrolase; 1.65A {Chryseobacterium indologenes}
Length = 219
Score = 105 bits (263), Expect = 7e-24
Identities = 29/209 (13%), Positives = 60/209 (28%), Gaps = 23/209 (11%)
Query: 5 SFHIVQVTPFKQNCTFLFDEESLEAVVVDPGGDLD----IIKDVIQSRNFHVKQIWITHG 60
+F + + N +L ++ V+ D + ++ + + N V ++ TH
Sbjct: 20 TFGVFGGKEYSANSMYLVTKK--GVVLFDVPWEKVQYQSLMDTIKKRHNLPVVAVFATHS 77
Query: 61 HVDHVGGAAQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDT 120
H D G + T ++ ++ G
Sbjct: 78 HDDRAGDLSFFNNKGIKTYATAKTNEFLKKDGKATS---------------TEIIKTGKP 122
Query: 121 LLLGTHIFKVFHC-PGHSPGHVIYVNFENNFAHLGDTLFRSSIGRTDIL-HGDYQQLINS 178
+G F V GH+ +V+ + N G + +S + + +Q +
Sbjct: 123 YRIGGEEFVVDFLGEGHTADNVVVWFPKYNVLDGGCLVKSNSATDLGYIKEANVEQWPKT 182
Query: 179 INNKILPLGDEISFVCGHGPNSTIGRERR 207
IN + GH G
Sbjct: 183 INKLKAKYSKATLIIPGHDEWKGGGHVEH 211
>3adr_A Putative uncharacterized protein ST1585; quorum sensing, quinolone
signal, metallo-beta-lactamase FOL conserved
hypothetical protein; HET: EPE; 1.80A {Sulfolobus
tokodaii}
Length = 261
Score = 104 bits (261), Expect = 1e-23
Identities = 31/211 (14%), Positives = 71/211 (33%), Gaps = 25/211 (11%)
Query: 13 PFKQNCTFLFDEESLEAVVVDPGGDLDIIKDVIQSRNFHVKQIWITHGHVDHVGGAAQLK 72
P + E+ V++D G I + + I +TH H+DH+G +L
Sbjct: 17 PEIATVYVMCGEK--LTVMIDAGVSNSIADFSFLDK---LDYIVLTHLHIDHIGLLPELL 71
Query: 73 EDLSLTIIGPHKDDAAMMGK-------------VDEQARLLSIRMNARNASSDRWLQDGD 119
+ ++ + + + + + + ++ +
Sbjct: 72 QVYKAKVLVKSGFKKYLTSEDGLKKLNESAEKVLGDLYYVYGGLEKKLDQDKVIEVEGNE 131
Query: 120 TLLLGTHIFKVFHCPGHSPGHVIYVNFENNFAHLGDTL---FRSSIGRTDILHGDYQQLI 176
LG + ++ + PGH+ H+ ++F GD+ F + T DY+ +
Sbjct: 132 EFDLGGYRMRLIYTPGHARHHMSV--LVDDFLFTGDSAGAYFNGVVIPTTPPVIDYKMYM 189
Query: 177 NSINNKILPLGDEISFVCGHGPNSTIGRERR 207
S+ + + L ++ HG +
Sbjct: 190 ESL-KRQIELKPKV-VGFAHGGLVSPKIMEE 218
>1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two
monomers PER assymmetric UNIT., hydrolase; HET: GOL;
1.65A {Fluoribacter gormanii} SCOP: d.157.1.1 PDB:
1jt1_A* 1l9y_A
Length = 263
Score = 101 bits (252), Expect = 1e-22
Identities = 36/230 (15%), Positives = 80/230 (34%), Gaps = 24/230 (10%)
Query: 3 KLSFHIVQVTPFKQNCTFLFDEESLEAVVVDPG--GDLDIIKDVIQSRNFH---VKQIWI 57
+++ ++ V + ++++ ++ +IK I+ F K + I
Sbjct: 12 RIAGNLYYVGTDDLASYLIVTPR--GNILINSDLEANVPMIKASIKKLGFKFSDTKILLI 69
Query: 58 THGHVDHVGGAAQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASS-DRWLQ 116
+H H DH G+ +K+ + +D + ++ + S+ D+ L
Sbjct: 70 SHAHFDHAAGSELIKQQTKAKYMVMDEDVSVILSGGKSDFHYANDSSTYFTQSTVDKVLH 129
Query: 117 DGDTLLLGTHIFKVFHCPGHSPGHVIYVNFENNFAHLGDTLFRSSIGRTDIL-------- 168
DG+ + LG + PGH+ G + + + SIG
Sbjct: 130 DGERVELGGTVLTAHLTPGHTRGCTTWTMKLKDHGKQYQAVIIGSIGVNPGYKLVDNITY 189
Query: 169 HGDYQQLINSINNKILPLGDEISFVCGHGP------NSTIGRERRLNPFL 212
+ +SI + + +I F+ H + + + NPF+
Sbjct: 190 PKIAEDYKHSI-KVLESMRCDI-FLGSHAGMFDLKNKYVLLSKGQNNPFV 237
>2whg_A VIM-4 metallo-beta-lactamase; hydrolase, alpha-beta/BETA-alpha
fold; HET: FLC; 1.90A {Pseudomonas aeruginosa} PDB:
2wrs_A* 1ko3_A 1ko2_A
Length = 230
Score = 98.2 bits (244), Expect = 1e-21
Identities = 28/192 (14%), Positives = 58/192 (30%), Gaps = 19/192 (9%)
Query: 12 TPFKQNCTFLFDEESLEAVVVDPGGDLD----IIKDVIQSRNFHVKQIWITHGHVDHVGG 67
+ N + D + E +++D ++ ++ + V + TH H D VGG
Sbjct: 34 AVYPSNGLIVRDGD--ELLLIDTAWGAKNTAALLAEIEKQIGLPVTRAVSTHFHDDRVGG 91
Query: 68 AAQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHI 127
L+ + + +E S + GD + G +
Sbjct: 92 VDVLRA-AGVATYASPSTRRLAEAEGNEIP----------THSLEGLSSSGDAVRFG-PV 139
Query: 128 FKVFHCPGHSPGHVIYVNFENNFAHLGDTLFRSSIGRTDIL-HGDYQQLINSINNKILPL 186
+ HS +++ N + G + S + D + S+
Sbjct: 140 ELFYPGAAHSTDNLVVYVPSANVLYGGCAVHELSRTSAGNVADADLAEWPTSVERIQKHY 199
Query: 187 GDEISFVCGHGP 198
+ + GHG
Sbjct: 200 PEAEVVIPGHGL 211
>1ko3_A VIM-2 metallo-beta-lactamase; alpha-beta/BETA-alpha fold,
hydrolase; 1.91A {Pseudomonas aeruginosa} SCOP:
d.157.1.1 PDB: 1ko2_A
Length = 230
Score = 93.4 bits (231), Expect = 3e-20
Identities = 29/209 (13%), Positives = 63/209 (30%), Gaps = 19/209 (9%)
Query: 12 TPFKQNCTFLFDEESLEAVVVDPGGDLD----IIKDVIQSRNFHVKQIWITHGHVDHVGG 67
+ N + D + E +++D ++ ++ + V + TH H D VGG
Sbjct: 34 AVYPSNGLIVRDGD--ELLLIDTAWGAKNTAALLAEIEKQIGLPVTRAVSTHFHDDRVGG 91
Query: 68 AAQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHI 127
L+ A + S + GD + G +
Sbjct: 92 VDVLRAA-----------GVATYASPSTRRLAEVEGNEIPTHSLEGLSSSGDAVRFG-PV 139
Query: 128 FKVFHCPGHSPGHVIYVNFENNFAHLGDTLFRSSIGRTDIL-HGDYQQLINSINNKILPL 186
+ HS +++ + + G ++ S + D + SI
Sbjct: 140 ELFYPGAAHSTDNLVVYVPSASVLYGGCAIYELSRTSAGNVADADLAEWPTSIERIQQHY 199
Query: 187 GDEISFVCGHGPNSTIGRERRLNPFLKSN 215
+ + GHG + + +K++
Sbjct: 200 PEAQFVIPGHGLPGGLDLLKHTTNVVKAH 228
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold.,
hydrolase; HET: MCO; 1.50A {Elizabethkingia
meningoseptica} SCOP: d.157.1.1
Length = 223
Score = 90.7 bits (224), Expect = 3e-19
Identities = 28/215 (13%), Positives = 62/215 (28%), Gaps = 23/215 (10%)
Query: 5 SFHIVQVTPFKQNCTFLFDEESLEAVVVDPGGDLD----IIKDVIQSRNFHVKQIWITHG 60
+++ T + N +L ++ VV+D D ++ + V TH
Sbjct: 16 TYNTFNGTKYAANAVYLVTDK--GVVVIDCPWGEDKFKSFTDEIYKKHGKKVIMNIATHS 73
Query: 61 HVDHVGGAAQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDT 120
H D GG + + D+ + + +A + +
Sbjct: 74 HDDRAGGLEYFGK-IGAKTYSTKMTDSILAKENKPRA--------------QYTFDNNKS 118
Query: 121 LLLGTHIFKVFH-CPGHSPGHVIYVNFENNFAHLGDTLFRSSIGRTDIL-HGDYQQLINS 178
+G F+V++ GH+ +V+ + G + + + S
Sbjct: 119 FKVGKSEFQVYYPGKGHTADNVVVWFPKEKVLVGGCIIKSADSKDLGYIGEAYVNDWTQS 178
Query: 179 INNKILPLGDEISFVCGHGPNSTIGRERRLNPFLK 213
++N V GH + +
Sbjct: 179 VHNIQQKFSGAQYVVAGHDDWKDQRSIQHTLDLIN 213
>1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor,
succinic acid inhibitor, hydrolase; HET: BDS; 1.80A
{Pseudomonas aeruginosa} SCOP: d.157.1.1 PDB: 1dd6_A*
1vgn_A* 2doo_A* 1wup_A 1wuo_A 1jje_A* 1ddk_A
Length = 228
Score = 89.9 bits (222), Expect = 4e-19
Identities = 27/194 (13%), Positives = 54/194 (27%), Gaps = 22/194 (11%)
Query: 17 NCTFLFDEESLEAVVVDPGGDLDIIKDVIQS---RNFHVKQIWITHGHVDHVGGAAQLKE 73
+ + EA ++D + ++ R + +K +H H D GG L
Sbjct: 34 HGLVVLVNA--EAYLIDTPFTAKDTEKLVTWFVERGYKIKGSISSHFHSDSTGGIEWLNS 91
Query: 74 DLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHIFKVFHC 133
S+ + + Q + + L+ I +
Sbjct: 92 -RSIPTYASELTNELLKKDGKVQ--------------ATNSFSGVNYWLVKNKIEVFYPG 136
Query: 134 PGHSPGHVIYVNFENNFAHLGDTLFRSSIGRTDILHGDYQQLINSINNKILPLGDEISFV 193
PGH+P +V+ E G + +G ++ + + S G V
Sbjct: 137 PGHTPDNVVVWLPERKILFGGCFIKPYGLG--NLGDANIEAWPKSAKLLKSKYGKAKLVV 194
Query: 194 CGHGPNSTIGRERR 207
H +
Sbjct: 195 PSHSEVGDASLLKL 208
>2gmn_A Metallo-beta-lactamase; hydrolase; 1.40A {Bradyrhizobium japonicum
usda 110} SCOP: d.157.1.1
Length = 274
Score = 84.7 bits (208), Expect = 2e-17
Identities = 45/230 (19%), Positives = 81/230 (35%), Gaps = 25/230 (10%)
Query: 3 KLSFHIVQVTPFKQNCTFLFDEESLEAVVVDPG--GDLDIIKDVIQSRNFH---VKQIWI 57
+L +I V + + +++D +IKD I F +K I
Sbjct: 22 QLIDNIYYVGTDGIAVYVIKTSQ--GLILMDTAMPQSTGMIKDNIAKLGFKVADIKLILN 79
Query: 58 THGHVDHVGGAAQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQD 117
TH H+DH GG A++K++ ++ +D + G + + DR +++
Sbjct: 80 THAHLDHTGGFAEIKKETGAQLVAGERDKPLLEGG-YYPGDEKNEDLAFPAVKVDRAVKE 138
Query: 118 GDTLLLGTHIFKVFHCPGHSPGHVIYVNFENN--------FAHLGDTLFRSSIGRTDILH 169
GD + LG PGHSPG + + F G +G+
Sbjct: 139 GDRVTLGDTTLTAHATPGHSPGCTSWEMTVKDGKEDREVLFFCSGTVALNRLVGQPT-YA 197
Query: 170 GDYQQLINSINNKILPLGDEISFVCGHGPNSTIGRER------RLNPFLK 213
G + K + ++ + H + +R NPF+K
Sbjct: 198 GIVDDYRATF-AKAKAMKIDV-LLGPHPEVYGMQAKRAEMKDGAPNPFIK 245
>2p18_A Glyoxalase II; metalloprotein, beta sandwich, alpha-helical domain,
hydrolase; HET: SPD; 1.80A {Leishmania infantum} PDB:
2p1e_A*
Length = 311
Score = 83.9 bits (206), Expect = 2e-17
Identities = 51/275 (18%), Positives = 81/275 (29%), Gaps = 80/275 (29%)
Query: 5 SFHIVQVTPFKQNCTFL-FDEESLEAVVVDPGGDLDIIKDVIQSR---------NFHVKQ 54
+F + V K N ++L D + VD D I I+ +
Sbjct: 28 AFSVTVVPTLKDNFSYLINDHTTHTLAAVDVNADYKPILTYIEEHLKQQGNADVTYTFST 87
Query: 55 IWITHGHVDHVGGAAQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRW 114
I TH H DH GG A+LK +L N + +
Sbjct: 88 ILSTHKHWDHSGGNAKLKAELEAMNSTVPVVVVGG--------------ANDSIPAVTKP 133
Query: 115 LQDGDTLLLGTHIFKVFHCPGHSPGHVIYV------NFENNFAHLGDTLFRSSIGRTDIL 168
+++GD + +G +V P H+ GHV+Y + GDT+F + IG
Sbjct: 134 VREGDRVQVGDLSVEVIDAPCHTRGHVLYKVQHPQHPNDGVALFTGDTMFIAGIGAFF-- 191
Query: 169 HGDYQQLINSIN-------NKILPLGDEISFVCGHGPN---------------------- 199
GD + + ++ L GH
Sbjct: 192 EGDEKDMCRAMEKVYHIHKGNDYALDKVTFIFPGHEYTSGFMTFSEKTFPDRASDDLAFI 251
Query: 200 -------------------STIGRERRLNPFLKSN 215
S++ E+R N FL+
Sbjct: 252 QAQRAKYAAAVKTGDPSVPSSLAEEKRQNLFLRVA 286
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES;
1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB:
1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A
1hlk_A*
Length = 232
Score = 83.8 bits (206), Expect = 3e-17
Identities = 27/209 (12%), Positives = 55/209 (26%), Gaps = 23/209 (11%)
Query: 11 VTPFKQNCTFLFDEESLEAVVVDPGGDLD----IIKDVIQSRNFHVKQIWITHGHVDHVG 66
N + + +A ++D + ++ V S + V H H D +G
Sbjct: 32 WGMVPSNGMIVINNH--QAALLDTPINDAQTEMLVNWVTDSLHAKVTTFIPNHWHGDCIG 89
Query: 67 GAAQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTH 126
G L+ + D A + + D T+ L
Sbjct: 90 GLGYLQRKGVQSYANQMTIDLAKEKGLPV---------------PEHGFTDSLTVSLDGM 134
Query: 127 IFKVFH-CPGHSPGHVIYVNFENNFAHLGDTLFRSSIGRTDIL-HGDYQQLINSINNKIL 184
+ ++ GH+ +++ N G L + + D +++
Sbjct: 135 PLQCYYLGGGHATDNIVVWLPTENILFGGCMLKDNQTTSIGNISDADVTAWPKTLDKVKA 194
Query: 185 PLGDEISFVCGHGPNSTIGRERRLNPFLK 213
V GHG +
Sbjct: 195 KFPSARYVVPGHGNYGGTELIEHTKQIVN 223
>3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding,
periplasm,; HET: SDF; 1.41A {Aeromonas hydrophila} PDB:
1x8i_A 3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A*
3f9o_A
Length = 227
Score = 83.2 bits (205), Expect = 4e-17
Identities = 26/201 (12%), Positives = 58/201 (28%), Gaps = 15/201 (7%)
Query: 6 FHIVQVTPFKQNCTFLFDEESLEAVVVDPGGDLDIIKDVI----QSRNFHVKQIWITHGH 61
+ + ++N F + VV D +++ + V ++ T+ H
Sbjct: 13 YVVEDNYYVQENSMVYFGAK--GVTVVGATWTPDTARELHKLIKRVSRKPVLEVINTNYH 70
Query: 62 VDHVGGAAQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASS----DRWLQD 117
D GG A K + + +M + + + + D
Sbjct: 71 TDRAGGNAYWKSIG--AKVVSTRQTRDLMKSDWAEIVAFTRKGLPEYPDLPLVLPNVVHD 128
Query: 118 GDTLLLGTHIFKVFHCPGHSPGHVIYVNFENNFAHLGDTLFRSSIGRTDILHGDYQQLIN 177
GD L + + P H+P + + + G L ++ D +
Sbjct: 129 GDFTLQEGKVRAFYAGPAHTPDGIFVYFPDEQVLYGGCILKE---KLGNLSFADVKAYPQ 185
Query: 178 SINNKILPLGDEISFVCGHGP 198
++ + + GH
Sbjct: 186 TLERLKAMKLPIKTVIGGHDS 206
>2qed_A Hydroxyacylglutathione hydrolase; metallo-B- lactamase superfamily;
1.45A {Salmonella typhimurium LT2} SCOP: d.157.1.2
Length = 258
Score = 83.0 bits (204), Expect = 5e-17
Identities = 54/247 (21%), Positives = 88/247 (35%), Gaps = 62/247 (25%)
Query: 5 SFHIVQVTPFKQNCTFLFDEESLEAVVVDPGGDLDIIKDVIQSRNFHVKQIWITHGHVDH 64
S ++ + F+ N ++ + V+VDPG ++ I + + I++TH H DH
Sbjct: 7 SMNLNSIPAFQDNYIWVLTNDEGRCVIVDPGEAAPVL-KAIAEHKWMPEAIFLTHHHHDH 65
Query: 65 VGGAAQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLG 124
VGG +L + + + + + DGDT+ +
Sbjct: 66 VGGVKELLQHFPQMTVYGPAETQDKG--------------------ATHLVGDGDTIRVL 105
Query: 125 THIFKVFHCPGHSPGHVIYVNFENNFAHLGDTLFRSSIGRTDILHGDYQQLINSINNKIL 184
F +F PGH+ GHV Y F + GDTLF GR + G Q+ S+ KI
Sbjct: 106 GEKFTLFATPGHTLGHVCY--FSRPYLFCGDTLFSGGCGR--LFEGTPSQMYQSL-MKIN 160
Query: 185 PLGDEISFVCGHGPN------------------------------------STIGRERRL 208
L D+ C H + ER++
Sbjct: 161 SLPDDTLICCAHEYTLANIKFALSILPHDSFINEYYRKVKELRVKKQMTLPVILKNERKI 220
Query: 209 NPFLKSN 215
N FL++
Sbjct: 221 NLFLRTE 227
>1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT;
1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A
1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A
3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A
2bfz_A 2bg6_A 2bga_A ...
Length = 227
Score = 80.7 bits (198), Expect = 2e-16
Identities = 40/203 (19%), Positives = 62/203 (30%), Gaps = 23/203 (11%)
Query: 17 NCTFLFDEESLEAVVVDPGGDLD----IIKDVIQSRNFHVKQIWITHGHVDHVGGAAQLK 72
N L + V+VD D +I+ V + V + ITH H D +GG LK
Sbjct: 42 NGLVLNTSK--GLVLVDSSWDDKLTKELIEMVEKKFQKRVTDVIITHAHADRIGGIKTLK 99
Query: 73 EDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHIF-KVF 131
E + A +E LQ L G +
Sbjct: 100 ERGIKAHSTALTAELAKKNGYEEP---------------LGDLQTVTNLKFGNMKVETFY 144
Query: 132 HCPGHSPGHVIYVNFENNFAHLGDTLFRSSIGRTDIL-HGDYQQLINSINNKILPLGDEI 190
GH+ +++ + N G + +S + + SI N + +
Sbjct: 145 PGKGHTEDNIVVWLPQYNILVGGCLVKSTSAKDLGNVADAYVNEWSTSIENVLKRYRNIN 204
Query: 191 SFVCGHGPNSTIGRERRLNPFLK 213
+ V GHG G LK
Sbjct: 205 AVVPGHGEVGDKGLLLHTLDLLK 227
>2q0i_A Quinolone signal response protein; quorum sensing, pseudomonas
quinolone signal, PQS, metall- beta-lactamase, iron,
phosphodiesterase; 1.57A {Pseudomonas aeruginosa} SCOP:
d.157.1.14 PDB: 2q0j_A 3dh8_A*
Length = 303
Score = 80.0 bits (196), Expect = 3e-16
Identities = 38/217 (17%), Positives = 67/217 (30%), Gaps = 23/217 (10%)
Query: 3 KLSFHIVQVTPFKQNCTFLFDEESLEAVVVDPG--GDLDIIKDVIQSRNF---HVKQIWI 57
+L + + + L E+ +V+ G D +++ + V I
Sbjct: 11 QLDDDLCLLGDVQVPVFLLRLGEA-SWALVEGGISRDAELVWADLCRWVADPSQVHYWLI 69
Query: 58 THGHVDHVGGAAQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASS------ 111
TH H DH G L L + + + + A
Sbjct: 70 THKHYDHCGLLPYLCPRLPNVQVLASERTCQAWKSESAVRVVERLNRQLLRAEQRLPEAC 129
Query: 112 ------DRWLQDGDTLLLGTHI-FKVFHCPGHSPGHVIYVNFENNFAHLGDTLFRSSIGR 164
R + DG+ L LG +V GHS HV++ + GD L
Sbjct: 130 AWDALPVRAVADGEWLELGPRHRLQVIEAHGHSDDHVVFYDVRRRRLFCGDALGEFDEAE 189
Query: 165 TDI---LHGDYQQLINSINNKILPLGDEISFVCGHGP 198
+ D + + S+ ++ L + + GHG
Sbjct: 190 GVWRPLVFDDMEAYLESL-ERLQRLPTLLQLIPGHGG 225
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre,
flavoproteins, lactamase-fold; HET: FMN; 2.5A
{Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Length = 402
Score = 79.5 bits (195), Expect = 6e-16
Identities = 37/224 (16%), Positives = 60/224 (26%), Gaps = 47/224 (20%)
Query: 6 FHIVQVTP--FKQNCTFLFDEESLEAVVVDPGGD------LDIIKDVIQSRNFHVKQIWI 57
FH ++P N + DE+ + D L I VI + + + I
Sbjct: 23 FHGYTLSPMGTTYNAYLVEDEK---TTLFDTVKAEYKGELLCGIASVIDPKK--IDYLVI 77
Query: 58 THGHVDHVGGAAQLKEDL-SLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQ 116
H +DH G L E I AM + + ++
Sbjct: 78 QHLELDHAGALPALIEACQPEKIFTSSLGQKAMESHFHYKDW------------PVQVVK 125
Query: 117 DGDTLLLGTHIFKVFHCP-GHSPGHVIYVNFENNFAHLGDT---------LFRSSIGRTD 166
G+TL LG + H P ++ + D F I
Sbjct: 126 HGETLSLGKRTVTFYETRMLHWPDSMVSWFADEKVLISNDIFGQNIAASERFSDQIPVHT 185
Query: 167 I----------LHGDYQQLINSINNKILPLGDEISFVC-GHGPN 199
+ + Y ++ G F+C HG
Sbjct: 186 LERAMREYYANIVNPYAPQTLKAIETLVGAGVAPEFICPDHGVI 229
>2yz3_A Metallo-beta-lactamase; enzyme-inhibitor complex, hydrolase; HET:
M5P; 2.30A {Pseudomonas putida} SCOP: d.157.1.1
Length = 266
Score = 78.8 bits (193), Expect = 8e-16
Identities = 27/215 (12%), Positives = 60/215 (27%), Gaps = 19/215 (8%)
Query: 5 SFHIVQVTPFKQNCTFLFDEESLEAVVVDPGGDLD----IIKDVIQSRNFHVKQIWITHG 60
+ + N + D + E +++D ++ ++ + V + TH
Sbjct: 58 ATQSFDGAVYPSNGLIVRDGD--ELLLIDTAWGAKNTAALLAEIEKQIGLPVTRAVSTHF 115
Query: 61 HVDHVGGAAQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDT 120
H D VGG A + S + GD
Sbjct: 116 HDDRVGGVDV-----------LRAAGVATYASPSTRRLAEVEGNEIPTHSLEGLSSSGDA 164
Query: 121 LLLGTHIFKVFHCPGHSPGHVIYVNFENNFAHLGDTLFRSSIGRTDIL-HGDYQQLINSI 179
+ + + HS +++ + + G ++ S + D + SI
Sbjct: 165 VRF-GPVELFYPGAAHSTDNLVVYVPSASVLYGGCAIYELSRTSAGNVADADLAEWPTSI 223
Query: 180 NNKILPLGDEISFVCGHGPNSTIGRERRLNPFLKS 214
+ + GHG + + +K+
Sbjct: 224 ERIQQHYPEAQFVIPGHGLPGGLDLLKHTTNVVKA 258
>2gcu_A Putative hydroxyacylglutathione hydrolase 3; ethylmalonic
encephalopathy, ETHE1, structural genomics, protein
structure initiative; 1.48A {Arabidopsis thaliana}
Length = 245
Score = 76.9 bits (188), Expect = 3e-15
Identities = 51/205 (24%), Positives = 73/205 (35%), Gaps = 32/205 (15%)
Query: 23 DEESLEAVVVDPGG-DLDIIKDVIQSRNFHVKQIWITHGHVDHVGGAAQLKEDLSLTIIG 81
A+++DP +D +I + TH H DHV G LK L
Sbjct: 24 SHPDKPALLIDPVDKTVDRDLKLIDELGLKLIYAMNTHVHADHVTGTGLLKTKLPGVKSV 83
Query: 82 PHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHIFKVFHCPGHSPGHV 141
K + D +L+ GD + +G +V PGH+ G V
Sbjct: 84 ISKASGSKA---------------------DLFLEPGDKVSIGDIYLEVRATPGHTAGCV 122
Query: 142 IYVNFEN------NFAHLGDTLFRSSIGRTDILHGDYQQLINSINNKILPLGDEISFVCG 195
YV E A GD + GRTD G QL S++++I L +
Sbjct: 123 TYVTGEGADQPQPRMAFTGDAVLIRGCGRTDFQEGSSDQLYESVHSQIFTLPKDTLIYPA 182
Query: 196 HGPN----STIGRERRLNPFLKSNI 216
H ST+G E + NP L +
Sbjct: 183 HDYKGFEVSTVGEEMQHNPRLTKDK 207
>1sml_A Protein (penicillinase); metallo-beta-lactamase, antibiotic
resistance, binuclear zinc, hydrolase; 1.70A
{Stenotrophomonas maltophilia} SCOP: d.157.1.1 PDB:
2aio_A* 2fm6_A 2fu6_A 2fu7_A* 2fu8_A* 2fu9_A* 2gfj_A*
2gfk_A* 2h6a_A 2hb9_A* 2qdt_A* 2qjs_A 2qin_A
Length = 269
Score = 76.2 bits (186), Expect = 6e-15
Identities = 34/217 (15%), Positives = 71/217 (32%), Gaps = 17/217 (7%)
Query: 7 HIVQVTPFKQNCTFLFDEESLEAVVVDPG--GDLDIIKDVIQSRNF---HVKQIWITHGH 61
H Q+ + + AV++D G + D +++R ++ I ++H H
Sbjct: 29 HTWQIGTEDLTALLVQTPD--GAVLLDGGMPQMASHLLDNMKARGVTPRDLRLILLSHAH 86
Query: 62 VDHVGGAAQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTL 121
DH G A+LK + + A ++ + + A++DR + DG+ +
Sbjct: 87 ADHAGPVAELKRRTGAKVAANA-ESAVLLARGGSDDLHFGDGITYPPANADRIVMDGEVI 145
Query: 122 LLGTHIFKVFHCPGHSPGHVIYVNFENNFAHLGDTLFRSSIGRTDI-------LHGDYQQ 174
+G +F GH+PG + + + S+ +
Sbjct: 146 TVGGIVFTAHFMAGHTPGSTAWTWTDTRNGKPVRIAYADSLSAPGYQLQGNPRYPHLIED 205
Query: 175 LINSINNKILPLGDEISFVCGHGPNSTIGRERRLNPF 211
S + L ++ + H S
Sbjct: 206 YRRSF-ATVRALPCDV-LLTPHPGASNWDYAAGARAG 240
>2p97_A Hypothetical protein; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PSI-2; HET: MSE; 1.65A {Anabaena variabilis atcc 29413}
SCOP: d.157.1.12
Length = 201
Score = 74.2 bits (181), Expect = 2e-14
Identities = 36/199 (18%), Positives = 61/199 (30%), Gaps = 32/199 (16%)
Query: 13 PFKQNCTFLFDEESLEAVVVDPGGDLDIIKDVIQSRNFHVKQIWITHGHVDHVGGAAQLK 72
N E +++DP + ++ +WI + DHV A ++
Sbjct: 21 NIDFNGFAWIRPE--GNILIDPVALSNHDWKHLE---SLGGVVWIVLTNSDHVRSAKEIA 75
Query: 73 EDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHIFKVFH 132
+ I GP + D RWL DGD KV
Sbjct: 76 DQTYTKIAGPVAEKENFPIYCD------------------RWLSDGDE---LVPGLKVME 114
Query: 133 CPGHSPGHVIYVNFENNFAHLGDTLFRSSIGRT----DILHGDYQQLINSINNKILPLGD 188
G + + E GD + G D + Q+++ S+ ++ L
Sbjct: 115 LQGSKTPGELALLLEETTLITGDLVRAYRAGGLEILPDEKLMNKQKVVASV-RRLAALEK 173
Query: 189 EISFVCGHG-PNSTIGRER 206
+ + G G GR+R
Sbjct: 174 VEAVLVGDGWSVFRDGRDR 192
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like,
oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Length = 414
Score = 72.1 bits (176), Expect = 1e-13
Identities = 27/208 (12%), Positives = 49/208 (23%), Gaps = 43/208 (20%)
Query: 17 NCTFLFDEESLEAVVVDPGGD------LDIIKDVIQSRNFHVKQIWITHGHVDHVGGAAQ 70
N F+ DE V+D L I +K + + H DH
Sbjct: 42 NSYFIDDEC---PTVIDSVKYPFAEEWLSRIAACCPLDK--IKYVVMNHAEGDHASSLKD 96
Query: 71 LKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHIFKV 130
+ K + + ++ + D TL +G K
Sbjct: 97 HYHKFTNATFVCTKKCQEHLK-----------ILYGMEKATWLIVDDKYTLKIGKRTLKF 145
Query: 131 FHCP-GHSPGHVIYVNFENNFAHLGDT---------LFRSSIGRTDILH----------G 170
P H P E+ D + + ++H G
Sbjct: 146 IPVPLLHWPDSTFTYCPEDKILFSNDGFGQHYATSRRWADECDVSHVMHLFKEYTANILG 205
Query: 171 DYQQLINSINNKILPLGDEISFVCGHGP 198
+ + + + + HG
Sbjct: 206 LFSAQMRKALEVASTVEIKY-ILSAHGV 232
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN;
2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3
PDB: 1ycf_A* 1ych_A*
Length = 398
Score = 67.9 bits (165), Expect = 2e-12
Identities = 25/227 (11%), Positives = 57/227 (25%), Gaps = 43/227 (18%)
Query: 17 NCTFLFDEESLEAVVVDPGGD------LDIIKDVIQSRNFHVKQIWITHGHVDHVGGAAQ 70
N + D++ +VD + + +K + + + + H DH G
Sbjct: 37 NAYLIVDDK---TALVDTVYEPFKEELIAKLKQIKDPVK--LDYLVVNHTESDHAGAFPA 91
Query: 71 LKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHIFKV 130
+ E + + + + + ++ G ++ LG
Sbjct: 92 IMELCPDAHVLCTQRAFDSL-----------KAHYSHIDFNYTIVKTGTSVSLGKRSLTF 140
Query: 131 FHCP-GHSPGHVIYVNFENNFAHLGDTLFRSSIGRTDI-------------------LHG 170
P H P + E D + +
Sbjct: 141 IEAPMLHWPDSMFTYVPEEALLLPNDAFGQHIATSVRFDDQVDAGLIMDEAAKYYANILM 200
Query: 171 DYQQLINSINNKILPLGDEISFVC-GHGPNSTIGRERRLNPFLKSNI 216
+ LI ++I + I + HG R + + +
Sbjct: 201 PFSNLITKKLDEIQKINLAIKTIAPSHGIIWRKDPGRIIEAYARWAE 247
>1x8h_A Beta-lactamase; hydrolase; 1.60A {Aeromonas hydrophila} SCOP:
d.157.1.1 PDB: 3fai_A 1x8i_A 2qds_A* 2gkl_A* 1x8g_A*
3f9o_A
Length = 228
Score = 67.3 bits (163), Expect = 2e-12
Identities = 27/189 (14%), Positives = 55/189 (29%), Gaps = 13/189 (6%)
Query: 17 NCTFLFDEESLEAVVVDPGGDLDIIKDVI----QSRNFHVKQIWITHGHVDHVGGAAQLK 72
N F + VV D +++ + V ++ T+ H D GG A K
Sbjct: 24 NSMVYFGAK--GVTVVGATWTPDTARELHKLIKRVSRKPVLEVINTNYHTDRAGGNAYWK 81
Query: 73 EDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRW---LQDGDTLLLGTHIFK 129
+ ++ + M E + + DGD L +
Sbjct: 82 S-IGAKVVSTRQTRDLMKSDWAEIVAFTRKGLPEYPDLPLVLPNVVHDGDFTLQEGKVRA 140
Query: 130 VFHCPGHSPGHVIYVNFENNFAHLGDTLFRSSIGRTDILHGDYQQLINSINNKILPLGDE 189
+ P H+P + + + G + + +G D + ++
Sbjct: 141 FYAGPAHTPDGIFVYFPDEQVLYGGC-ILKEKLGNLS--FADVKAYPQTLERLKAMKLPI 197
Query: 190 ISFVCGHGP 198
+ + GH
Sbjct: 198 KTVIGGHDS 206
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine
like domain, oxidoreductase; HET: FMN; 1.70A
{Methanothermobacterthermautotrophicus} PDB: 2ohi_A*
2ohj_A*
Length = 404
Score = 67.5 bits (164), Expect = 2e-12
Identities = 33/223 (14%), Positives = 61/223 (27%), Gaps = 42/223 (18%)
Query: 6 FHIVQVTPFKQNCTFLFDEESLEAVVVDPGGD------LDIIKDVIQSRNFH-VKQIWIT 58
+H + N + +E ++D + ++D +Q V I
Sbjct: 25 YHGYTLQGTTYNAYLVCGDE--GVALIDNSYPGTFDELMARVEDALQQVGMERVDYIIQN 82
Query: 59 HGHVDHVGGAAQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDG 118
H DH G +L I + + K + + ++ G
Sbjct: 83 HVEKDHSGVLVELHRRFPEAPIYCTEVAVKGLLK----------HYPSLREAEFMTVKTG 132
Query: 119 DTLLLGTHIFKVFHCP-GHSPGHVIYVNFENNFAHLGDT---------LFRSSIGRTDI- 167
D L LG P H P + + E+ D I +
Sbjct: 133 DVLDLGGKTLTFLETPLLHWPDSMFTLLDEDGILFSNDAFGQHLCCPQRLDREIPEYILM 192
Query: 168 ---------LHGDYQQLINSINNKILPLG--DEISFVC-GHGP 198
L +L+ +++ LG + I + HG
Sbjct: 193 DAARKFYANLITPLSKLVLKKFDEVKELGLLERIQMIAPSHGQ 235
>1vme_A Flavoprotein; TM0755, structural genomics, JCSG, protein structure
initiative, PSI, joint center for structural genomics;
HET: MSE; 1.80A {Thermotoga maritima} SCOP: c.23.5.1
d.157.1.3
Length = 410
Score = 67.0 bits (163), Expect = 3e-12
Identities = 32/224 (14%), Positives = 62/224 (27%), Gaps = 52/224 (23%)
Query: 6 FHIVQVTP--FKQNCTFLFDEESLEAVVVDPGGD------LDIIKDVIQSRNFHVKQIWI 57
F V P N + V++D +D + ++ + + I +
Sbjct: 40 FEAVWEIPEGISYNAYLVKLNG--ANVLIDGWKGNYAKEFIDALSKIVDPKE--ITHIIV 95
Query: 58 THGHVDHVGGAAQLKEDLS--LTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWL 115
H DH G + + + II + + G + +
Sbjct: 96 NHTEPDHSGSLPATLKTIGHDVEIIASNFGKRLLEGFYGIKD--------------VTVV 141
Query: 116 QDGDTLLLGTHIFKVFHCPG-HSPGHVIYVNFENNFAHLGDTLFRSSIGRT--------- 165
+DG+ +G FK P H P ++ + + D +
Sbjct: 142 KDGEEREIGGKKFKFVMTPWLHWPDTMVT--YLDGILFSCDVGGGYLLPEILDDSNESVV 199
Query: 166 -----------DILHGDYQQLINSINNKILPLGDEISFVCGHGP 198
+ G Y+ I K+ L + + GHG
Sbjct: 200 ERYLPHVTKYIVTVIGHYKNYILEGAEKLSSLKIKA-LLPGHGL 242
>1p9e_A Methyl parathion hydrolase; Zn containing; 2.40A {Pseudomonas SP}
SCOP: d.157.1.5
Length = 331
Score = 66.4 bits (161), Expect = 4e-12
Identities = 36/218 (16%), Positives = 60/218 (27%), Gaps = 29/218 (13%)
Query: 17 NCTFLFDEESLEAVVVDPGG------DLDIIKDVIQSRNFH---VKQIWITHGHVDHVGG 67
+ + V+VD G L + +++ + V +I+ITH H DHVGG
Sbjct: 98 TGYLVNTGS--KLVLVDTGAAGLFGPTLGRLAANLKAAGYQPEQVDEIYITHMHPDHVGG 155
Query: 68 AAQLKE----DLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLL 123
++ + + D +D+ S +S
Sbjct: 156 LMVGEQLAFPNAVVRADQKEADFWLSQTNLDKAPDDESKGFFKGAMASLNPYVKAGKFKP 215
Query: 124 GTHI------FKVFHCPGHSPGHVIYVNF--ENNFAHLGDTLFRS--SIGRTDILHGDYQ 173
+ K GH+PGH YV A LGD + + +
Sbjct: 216 FSGNTDLVPGIKALASHGHTPGHTTYVVESQGQKLALLGDLILVAAVQFDDPSVTTQLDS 275
Query: 174 QLINSINNKILPLG----DEISFVCGHGPNSTIGRERR 207
+ + H IG R
Sbjct: 276 DSKSVAVERKKAFADAAKGGYLIAASHLSFPGIGHIRA 313
>2r2d_A AGR_PTI_140P, Zn-dependent hydrolases; lactonase, N-acyl hompserine
lactone, DI-nuclear zinc center, quorum quenching, AIIB,
phosphate; HET: PO4; 1.75A {Agrobacterium tumefaciens}
Length = 276
Score = 63.9 bits (154), Expect = 3e-11
Identities = 21/172 (12%), Positives = 51/172 (29%), Gaps = 13/172 (7%)
Query: 52 VKQIWITHGHVDHVGGAAQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARN--- 108
+ + ++H H DH G + + A + + ++
Sbjct: 104 ISTVVLSHLHNDHAGCVEYFGKSRLI-AHEDEFATAVRYFATGDHSSPYIVKDIEAWLAT 162
Query: 109 -ASSDRWLQDGDTLLLGTHIFKVFHCPGHSPGHV-IYVNFENNFAHL--GDTL-FRSSIG 163
+ D +D L + + GH+ G + + V E L D ++ G
Sbjct: 163 PRNWDLVGRDERERELAPGVNLLNFGTGHASGMLGLAVRLEKQPGFLLVSDACYTATNYG 222
Query: 164 RTDI---LHGDYQQLINSINN-KILPLGDEISFVCGHGPNSTIGRERRLNPF 211
+ D ++++ + ++ + GH + + F
Sbjct: 223 PPARRAGVLHDTIGYDRTVSHIRQYAESRSLTVLFGHDREQFASLIKSTDGF 274
>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus
thermophilus HB8}
Length = 317
Score = 62.4 bits (150), Expect = 8e-11
Identities = 34/217 (15%), Positives = 63/217 (29%), Gaps = 36/217 (16%)
Query: 17 NCTFLFDEESLEAVVVDPGGDLDIIKDVIQS-------RNFHVKQIWITHGHVDHVGGAA 69
N L E +VD + ++ VK I +TH H DH G +
Sbjct: 23 NLYLLQGAG--EVALVDTALGTRAARGALELHLAELGLCFQDVKTILLTHHHPDHYGLSG 80
Query: 70 QLKEDLSLTIIGPHKDDAAMMGKVDEQA------------------------RLLSIRMN 105
+ + + + + +A + R
Sbjct: 81 FFEGLGARVFLHEEEFARGHRFWREPEAFAEASWRLFLDHGTPEGALQGIRETVEKTRER 140
Query: 106 ARNASSDRWLQDGDTLLLGTHIFKVFHCPGHSPGHVIYVNFENNFAHLGDTLFRSSIGRT 165
+ L+DG+ L + +V PGH+ GH + E GD L
Sbjct: 141 VHPPQNPLPLRDGEALEVAGKRLRVLWTPGHADGHAAFYLEEEGVLLAGDALLEKVSPNV 200
Query: 166 DILHGDYQQLINSI---NNKILPLGDEISFVCGHGPN 199
+ + + +++ LG +++ GP
Sbjct: 201 GLWAYTRENPLKDFLRSLDRLADLGARVAYAGHFGPI 237
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic
resistance, structure, hydrolase, metal binding protein;
1.90A {Pseudomonas aeruginosa}
Length = 246
Score = 61.6 bits (148), Expect = 1e-10
Identities = 26/218 (11%), Positives = 56/218 (25%), Gaps = 21/218 (9%)
Query: 6 FHIVQVTPFKQNCTFLFDEESLEAVVVDPGGDLDIIKDVIQSR----NFHVKQIWITHGH 61
F + + N + V+V + + ++ TH H
Sbjct: 20 FVVTDRDFYSSNVLVAKMLDG-TVVIVSSPFENLGTQTLMDWVAKTMKPKKVVAINTHFH 78
Query: 62 VDHVGGAAQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARN-----------AS 110
+D GG K+ + T + ++ + N A
Sbjct: 79 LDGTGGNEIYKKMGAETWSSDLTKQLRLEENKKDRIKAAEFYKNEDLKRRILSSHPVPAD 138
Query: 111 SDRWLQDGDTLLLGTHIFKVFHCPGHSPGHVIYVNFENNFA-HLGDTLFRSSIGRTDILH 169
+ L+ G + +V + V F G + +G
Sbjct: 139 NVFDLKQGKVFSFSNELVEVSFPGPAHSPDNVVVYFPKKKLLFGGCMIKPKELGYLG--D 196
Query: 170 GDYQQLINSINNKILPLGDEISFVCGHGPNSTIGRERR 207
+ + +S ++ +I + GHG +
Sbjct: 197 ANVKAWPDSA-RRLKKFDAKI-VIPGHGEWGGPEMVNK 232
>3hnn_A Putative diflavin flavoprotein A 5; PSI-2, protein structure
initiative, northeast structural genomics consortium,
NESG, NSR435A, DFA5; 1.80A {Nostoc SP}
Length = 262
Score = 59.0 bits (142), Expect = 7e-10
Identities = 24/220 (10%), Positives = 61/220 (27%), Gaps = 41/220 (18%)
Query: 19 TFLFDEESLEAVVVDPGGD------LDIIKDVIQSRNFHVKQIWITHGHVDHVGGAAQLK 72
+++ + + + ++DP + L+ ++ + + + + + H + + L
Sbjct: 45 SYVIEGD--KTAIIDPPVESFMKIYLEALQQTVNLKK--LDYVILGHFSPNRIPTFKALL 100
Query: 73 EDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGT-HIFKVF 131
E A + + + ++ +TL LG H+ K
Sbjct: 101 ELAPQITFVCSLPAAGDL-----------RAAFPDDNLNILPMRGKETLDLGKGHVLKFL 149
Query: 132 HCP-GHSPGHVIYVNFENNFAHLGDTLFRSSIGRT-----------------DILHGDYQ 173
P P + + + + G + L +
Sbjct: 150 PIPSPRWPAGLCTYDVQTQILYTDKIFGAHICGDDVFDDNWESFKEDQRYYFNCLMAPHA 209
Query: 174 QLINSINNKILPLGDEISFVCGHGPNSTIGRERRLNPFLK 213
+ + KI L + + GHGP +
Sbjct: 210 IHVEAALEKISDLQVRL-YAVGHGPLVRTSLIALTQAYAD 248
>1ztc_A Hypothetical protein TM0894; structural genomics, PSI, protein
structure initiative, joint center for structural
genomics, JCSG; HET: MSE; 2.10A {Thermotoga maritima}
SCOP: d.157.1.11
Length = 221
Score = 56.1 bits (134), Expect = 6e-09
Identities = 27/190 (14%), Positives = 65/190 (34%), Gaps = 19/190 (10%)
Query: 17 NCTFLFDEESLEAVVVDPG--GDLDIIKDVIQSRNFH---VKQIWITHGHVDHVGGAAQL 71
+L ++ +++DPG +D +++ + + TH H+DH+ +
Sbjct: 36 TVVYLEHKD--RRIIIDPGNLSSMDELEEKFSELGISPDDITDVLFTHVHLDHIFNSVLF 93
Query: 72 KEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHIFKVF 131
+ H+ ++ + +S + L KVF
Sbjct: 94 EN----ATFYVHEVYKTKN--YLSFGTIVGRIYSKVISSWKNVVLLKGEESLFDEKVKVF 147
Query: 132 HCPGHSPGHVIYVNFENNFAHL---GDTLFRSSIGRTDILHGDYQQLINSINNKILPLGD 188
H P H+ H+ ++ N + GD + + + DI+ G + + +++
Sbjct: 148 HTPWHAREHLSFLLDTENAGRVLITGD-ITPNRLSYYDIIKGYGSVQVKNFLDRVGR--I 204
Query: 189 EISFVCGHGP 198
++ P
Sbjct: 205 DLLVFPHDAP 214
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A
{Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB:
2cfz_A* 2cg2_A 2cg3_A*
Length = 658
Score = 54.4 bits (130), Expect = 2e-08
Identities = 33/234 (14%), Positives = 64/234 (27%), Gaps = 45/234 (19%)
Query: 17 NCTFLFDEESLEAVVVDPGGDLDIIKDVIQSRNFH-----VKQIWITHGHVDHVGGAAQL 71
N TF+ + +VVD + + + ++ + +H H DH GG L
Sbjct: 124 NITFIRGDSGW--IVVDTLTTPATARAAYELVSRELGERPIRTVIYSHAHADHFGGVRGL 181
Query: 72 KED-----LSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNAS---------------- 110
E ++ II P A + + + R + +
Sbjct: 182 VEPQQVASGAVQIIAPAGFMEAAIKENVLAGNAMMRRATYQYGTQLPKGPQGQVDMAIGK 241
Query: 111 ------------SDRWLQDGDTLLLGTHIFKVFHCPG-HSPGHVIYVNFENNFAHLGDTL 157
+ +G+ L+L F + PG SP + + + +
Sbjct: 242 GLARGPLSLLAPTRLIEGEGEDLVLDGVPFTFQNTPGTESPAEMNIWLPRQKALLMAENV 301
Query: 158 FRSSIGRTDIL---HGDYQQLINSINNKILPLGDEISFVC-GHGPNSTIGRERR 207
+ + D IN + G + + H E
Sbjct: 302 VGTLHNLYTLRGAEVRDALGWSKYINQALHRFGRQAEVMFAVHNWPRWGNAEIV 355
>3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase,
quorum quenching, alternative binding site, product
complex; HET: C6L GOL; 0.95A {Bacillus thuringiensis
serovarkurstaki} PDB: 3dhb_A* 3dhc_A* 2a7m_A* 2br6_A
2btn_A
Length = 254
Score = 52.3 bits (124), Expect = 9e-08
Identities = 28/166 (16%), Positives = 53/166 (31%), Gaps = 22/166 (13%)
Query: 52 VKQIWITHGHVDHVGGAAQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASS 111
+ I +H H DH G + II + A + + + + +N +
Sbjct: 101 LLYIISSHLHFDHAG---GNGAFTNTPIIVQRTEYEAALHREEYMKECILPHLNYKIIEG 157
Query: 112 DRWLQDGDTLLLGTHIFKVFHCPGHSPGHVIYV---NFENNFAHLGDTLFRSSIGRTDI- 167
D + G ++ + PGHSPGH + D + ++
Sbjct: 158 DYEVVPG---------VQLLYTPGHSPGHQSLFIETEQSGSVLLTIDASYTKENFEDEVP 208
Query: 168 -LHGDYQQLINSINN-KILPLGDEISFVCGHGPNSTIGRERRLNPF 211
D + ++SI K + ++ GH E+ F
Sbjct: 209 FAGFDPELALSSIKRLKEVVKKEKPIIFFGHDIEQ----EKSCRVF 250
>3esh_A Protein similar to metal-dependent hydrolase; structural genomics,
PSI-2, protein structure initiative; 2.50A
{Staphylococcus aureus subsp}
Length = 280
Score = 46.5 bits (109), Expect = 5e-06
Identities = 26/162 (16%), Positives = 43/162 (26%), Gaps = 6/162 (3%)
Query: 52 VKQIWITHGHVDHVGGAAQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASS 111
+ + +TH H DH G + R S +
Sbjct: 101 IDYVLMTHMHFDHAAGLTDQAGHAIFENAIHVVQQDEWHEFIAPNIRSKSTYWDKNKGDY 160
Query: 112 DRWLQDGDTLLLGTHIFKVFHCPGHSPGHVIYVNF--ENNFAHLGDTLFRSSIGRTDILH 169
L + K+ H GHS GH I + H+GD ++ +
Sbjct: 161 SNKLILFEKHFEPVPGIKMQHSGGHSFGHTIITIESQGDKAVHMGDIFPTTAHKNPLWVT 220
Query: 170 GDYQQLINSINNKILPL----GDEISFVCGHGPNSTIGRERR 207
+ SI K + + F+ H N +
Sbjct: 221 AYDDYPMQSIREKERMIPYFIQQQYWFLFYHDENYFAVKYSD 262
>2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 2.00A {Enterococcus faecalis V583} SCOP:
d.157.1.10
Length = 429
Score = 44.6 bits (104), Expect = 2e-05
Identities = 13/142 (9%), Positives = 42/142 (29%), Gaps = 3/142 (2%)
Query: 37 DLDIIKDVIQSRNFHVKQIWITHGHVDHVGGAAQLKEDLSLTIIGPHKDDAAMMGKVDEQ 96
L + +++ ++++H H+DH L + + + + +
Sbjct: 70 RLGYEYHGAEDKDYQHTAVFLSHAHLDHSRMINYLDPAVP--LYTLKETKMILNSLNRKG 127
Query: 97 ARLLSIRMNARNASSD-RWLQDGDTLLLGTHIFKVFHCPGHSPGHVIYVNFENNFAHLGD 155
L+ +N + + L D + +G ++ + G + +
Sbjct: 128 DFLIPSPFEEKNFTREMIGLNKNDVIKVGEISVEIVPVDHDAYGASALLIRTPDHFITYT 187
Query: 156 TLFRSSIGRTDILHGDYQQLIN 177
R + ++ +
Sbjct: 188 GDLRLHGHNREETLAFCEKAKH 209
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp
family, KH domain, ribonuclease, ME beta-lactamase
superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB:
3af6_A*
Length = 651
Score = 44.3 bits (104), Expect = 2e-05
Identities = 32/183 (17%), Positives = 46/183 (25%), Gaps = 26/183 (14%)
Query: 17 NCTFLFDEESLEAVVVDPGG-------------DLDIIKDVIQSRNFHVKQIWITHGHVD 63
+ + + V+VD G D + R + I ITH H+D
Sbjct: 203 SALLV--QTDESFVLVDFGVNVAMLNDPYKAFPHFDAPEFQYVLREGLLDAIIITHAHLD 260
Query: 64 HVGGAAQL--KEDLSLTIIGPHKD---------DAAMMGKVDEQARLLSIRMNARNASSD 112
H G L I D + + + Q L R
Sbjct: 261 HCGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQDPLYRPRDIKEVIKHT 320
Query: 113 RWLQDGDTLLLGTHIFKVFHCPGHSPGHVIYVNFENNFAHLGDTLFRSSIGRTDILHGDY 172
L G+ + I H GH G I N H T +L
Sbjct: 321 ITLDYGEVRDISPDIRLTLHNAGHILGSAIVHLHIGNGLHNIAITGDFKFIPTRLLEPAN 380
Query: 173 QQL 175
+
Sbjct: 381 AKF 383
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit;
hydrolase, metallo-beta-lactamase, beta-CAsp, RNA
processing; 2.59A {Methanosarcina mazei}
Length = 640
Score = 40.1 bits (93), Expect = 4e-04
Identities = 29/146 (19%), Positives = 47/146 (32%), Gaps = 19/146 (13%)
Query: 17 NCTFLFDEESLEAVVVD----PGGDLDIIKDVIQSRNFHVKQI---WITHGHVDHVGGAA 69
+C L ES +++D G D ++ + F + QI +TH H+DH G
Sbjct: 198 SCFLLSTPESR--ILIDCGVNVGSDENMTPYLYVPEVFPLNQIDAVIVTHAHLDHQGLVP 255
Query: 70 QL-KEDLSLTIIGPH---------KDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGD 119
L K + + D + + + M A+ L +
Sbjct: 256 LLFKYGYEGPVYCTPPTRDLMVLLQLDYIDVAAKEGKKIPYESGMVAKTLKHTIPLDYEE 315
Query: 120 TLLLGTHIFKVFHCPGHSPGHVIYVN 145
+ I FH GH G I
Sbjct: 316 VTDIAPDIKLTFHNAGHILGSAISHF 341
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease,
exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A
{Thermus thermophilus HB27} PDB: 3bk1_A*
Length = 562
Score = 39.1 bits (90), Expect = 8e-04
Identities = 34/176 (19%), Positives = 59/176 (33%), Gaps = 22/176 (12%)
Query: 17 NCTFLFDEESLEAVVVDPGGDLDIIKDV--IQSRNFHVKQIWITHGHVDHVGGAAQL--- 71
+ F EE + PG DL +I V + +K +THGH DH+GG L
Sbjct: 45 DGGLAFPEEGM------PGVDL-LIPRVDYLIEHRHKIKAWVLTHGHEDHIGGLPFLLPM 97
Query: 72 --KEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHIFK 129
++ + I G + GK++E A + + + D + +G +
Sbjct: 98 IFGKESPVPIYGARLTLGLLRGKLEEFGLR-------PGAFNLKEISPDDRIQVGRYFTL 150
Query: 130 VFHCPGHSPGHVIYVNFENNFAHLGDTL-FRSSIGRTDILHGDYQQLINSINNKIL 184
HS V + T F+ D ++ + +L
Sbjct: 151 DLFRMTHSIPDNSGVVIRTPIGTIVHTGDFKLDPTPIDGKVSHLAKVAQAGAEGVL 206
>2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline binding
protein; PCE, hydrolase; HET: PC BTB; 1.92A
{Streptococcus pneumoniae} SCOP: b.109.1.1 d.157.1.8
PDB: 1wra_A*
Length = 547
Score = 38.7 bits (89), Expect = 0.001
Identities = 16/142 (11%), Positives = 41/142 (28%), Gaps = 11/142 (7%)
Query: 39 DIIKDVIQSRNF-HVKQIWITHGHVDHVGGAAQLKEDLSL-TIIGPHKDDA------AMM 90
D + ++ + + I +TH H DH+G +L + + D+ +
Sbjct: 64 DRVFRRLKELSVQKLDFILVTHTHSDHIGNVDELLSTYPVDRVYLKKYSDSRITNSERLW 123
Query: 91 GKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHIFKVFHCPGHSPGHVIYVNFENNF 150
+ ++L + Q G ++++ + +
Sbjct: 124 DNLYGYDKVLQTATETGVSVIQNITQGDAHFQFGDMDIQLYNYENETDS--SGELKKIWD 181
Query: 151 AHLGDTLFRSSIGRTDILH-GD 171
+ + + I GD
Sbjct: 182 DNSNSLISVVKVNGKKIYLGGD 203
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 38.4 bits (89), Expect = 0.001
Identities = 49/309 (15%), Positives = 81/309 (26%), Gaps = 124/309 (40%)
Query: 17 NCTFLFDEESLEAVVVDPGGDLDI----IKDVIQSRNF----HVKQIWITHGHV----DH 64
+L + + A+ + D K++I +N+ + +
Sbjct: 92 ENCYLEGND-IHALAAKLLQENDTTLVKTKELI--KNYITARIMAKRPFDKKSNSALFRA 148
Query: 65 VG-GAAQLK-------------EDL-SL-TIIGPHKDDAAMMGKVDEQARLLSIRMNARN 108
VG G AQL E+L L D ++ E L + +
Sbjct: 149 VGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGD--LIKFSAE--TLSELIRTTLD 204
Query: 109 ASS------D--RWLQDGDTL--------------LLG----TH---IFKVFHC-P---- 134
A + WL++ L+G H K+ P
Sbjct: 205 AEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELR 264
Query: 135 -------GHSPGHVIYV---------NFENNFAHLGDTLF----RS-----------SIG 163
GHS G V V +F + LF R SI
Sbjct: 265 SYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSIL 324
Query: 164 RTDILHGD-------------YQQLINSIN--NKILPLGDEIS---------FVCGHGPN 199
+ + + +Q+ + +N N LP G ++ V P
Sbjct: 325 EDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQ 384
Query: 200 STIGRERRL 208
S G L
Sbjct: 385 SLYGLNLTL 393
Score = 31.5 bits (71), Expect = 0.15
Identities = 34/240 (14%), Positives = 64/240 (26%), Gaps = 99/240 (41%)
Query: 57 ITHGHVDHV--------GGAAQLKEDLSLTIIGP-----HKDD--------AAMMGKV-- 93
++HG ++HV A+QL+E + + P D+ +G V
Sbjct: 11 LSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSS 70
Query: 94 ----DEQARLLSIRMNARNASSDRWLQDGD--TL---LLGT---------HIFKVF---- 131
+ + + + +L+ D L LL + K +
Sbjct: 71 LVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITAR 130
Query: 132 HCPGHSP--------------GHV-IYV------NFENNFAHLGDTLFRSSIGRTDILHG 170
G+ + N ++ F L D L+
Sbjct: 131 IMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRD------------LYQ 178
Query: 171 DYQ----QLINSINNKILPLG---DEISFVCGHG---------PNSTIGRERRLNPFLKS 214
Y LI + L + V G P++T ++ +L S
Sbjct: 179 TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD-----YLLS 233
>2zdf_A Metallo-beta-lactamase superfamily protein; metallo beta lactmase
fold, structural genomics, NPPSFA; HET: FLC; 2.50A
{Thermus thermophilus} PDB: 3idz_A* 2dkf_A 2zdd_A*
3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A*
Length = 431
Score = 38.4 bits (88), Expect = 0.001
Identities = 26/119 (21%), Positives = 38/119 (31%), Gaps = 9/119 (7%)
Query: 51 HVKQIWITHGHVDHVGGAAQL-KEDLSLTIIGPHKDDAAMMGKVDEQA-----RLLSIRM 104
V + +TH H+DHVG +L +E + M +++
Sbjct: 51 EVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPED 110
Query: 105 NARNASSDRWLQDGDTLLLGTHIFKVFHCPGHSPGHVIYV--NFENNFAHLGDTLFRSS 161
R L+ G+ L LG F GH PG V + GD R
Sbjct: 111 VEEALGHLRPLEYGEWLRLGALSLA-FGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREK 168
>3kl7_A Putative metal-dependent hydrolase; structural genomics, joint
center for structural genomics, JCSG; 2.30A
{Parabacteroides distasonis atcc 8503}
Length = 235
Score = 35.1 bits (80), Expect = 0.011
Identities = 29/163 (17%), Positives = 51/163 (31%), Gaps = 17/163 (10%)
Query: 9 VQVTPFKQNCTFLFDEESLEAVVVDPGGDLDIIKDVIQSRNFHVKQIWITHGHVDHVGGA 68
+ +T K + ++ ++ VDP + I ITH H DH+
Sbjct: 30 LTITFIKHGS-LMLTYDNH-SIQVDPVSEYADYTTFP-----KADIILITHEHGDHLDPK 82
Query: 69 AQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHIF 128
A + S T I +++ +GK + N +S +++ T
Sbjct: 83 AIQAVEKSDTEIIANENSQKKLGKGK-------VLKNGDTDTSISYMKIEAVPAYNTTPG 135
Query: 129 KVFHCPGHSPGHVIYVNFENNFAHLGDTLF---RSSIGRTDIL 168
+ + P H I GDT + DI
Sbjct: 136 RDKYHPRHRDNGYILTFDGLRVYIAGDTEDIPEMKDLKDIDIA 178
>3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ
biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas
putida KT2440} PDB: 1xto_A
Length = 321
Score = 33.7 bits (76), Expect = 0.029
Identities = 12/106 (11%), Positives = 25/106 (23%), Gaps = 2/106 (1%)
Query: 48 RNFHVKQIWITHGHVDHVGGAAQLKEDLSLTIIGP--HKDDAAMMGKVDEQARLLSIRMN 105
R+ + I + +DH G L+E + D + + +
Sbjct: 79 RDTGINAIVLLDSQIDHTTGLLSLREGCPHQVWCTDMVHQDLTTGFPLFNMLSHWNGGLQ 138
Query: 106 ARNASSDRWLQDGDTLLLGTHIFKVFHCPGHSPGHVIYVNFENNFA 151
+ L F + H + +N
Sbjct: 139 WNRIELEGSFVIDACPNLKFTPFPLRSAAPPYSPHRFDPHPGDNLG 184
>3h3e_A Uncharacterized protein TM1679; structural genomics, surface
entropy reduction, ISFI, beta- lactamase superfamily,
PSI-2; 2.75A {Thermotoga maritima}
Length = 267
Score = 32.5 bits (73), Expect = 0.066
Identities = 28/177 (15%), Positives = 53/177 (29%), Gaps = 2/177 (1%)
Query: 27 LEAVVVDPGGDLDIIKDVIQSRNFHVKQIWITHGHVDHVGGAAQLKEDLSLTIIGPHKDD 86
+++V+ D G +K+ + K + I+HGH DH GG L
Sbjct: 37 VDSVLFDTGKSDVFLKNARKLGIDLPKDVLISHGHYDHAGGLLYLSGKRVWLRKEALDQK 96
Query: 87 AAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHIFKVFHCPGHSPGHVIYVNF 146
+ + + + LLG + G
Sbjct: 97 YSGERYAGADWNEVLYYNTGKFVIERITEIGKNMFLLGPANLRGKVPTGDFFVERNGERR 156
Query: 147 ENNFAHLGDTLFRSSIGRTDILHGDYQQLINSINNKILPLGDEISFVCG--HGPNST 201
++ F + R+ G I ++ + N + + + I V G H S+
Sbjct: 157 KDLFEDEQTLVVRTKEGLVVITGCSHRGIDNILLDIAETFNERIKMVVGGFHLLKSS 213
>2p4z_A Metal-dependent hydrolases of the beta-lactamase superfamily II;
2.10A {Thermoanaerobacter tengcongensis MB4}
Length = 284
Score = 31.6 bits (70), Expect = 0.14
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 28 EAVVVDPGGDLDIIKDVIQSRNFHVKQIW---ITHGHVDHVGGAAQLKEDLSLTIIGPHK 84
+ +VVD G + IK+ V +I +THGH DH+GG L E I HK
Sbjct: 43 KEIVVDTGQSENFIKN-CGLMGIDVGRIKKVVLTHGHYDHIGGLKGLLERNPEVKIYTHK 101
Query: 85 DDAAMMGKVDEQARLLSIRMN 105
+ + + + I +
Sbjct: 102 EILNKKYAMRKGGQFEEIGFD 122
>1xto_A Coenzyme PQQ synthesis protein B; alpha-beta protein, northeast
structural genomics consortium, NESG, protein structure
initiative; 2.80A {Pseudomonas putida KT2440} SCOP:
d.157.1.6
Length = 311
Score = 31.3 bits (69), Expect = 0.19
Identities = 8/83 (9%), Positives = 25/83 (30%), Gaps = 7/83 (8%)
Query: 17 NCTFLFDEESLEAVVVDPGGDL-------DIIKDVIQSRNFHVKQIWITHGHVDHVGGAA 69
+ ++ + ++ + D+ ++ R+ + I + +DH G
Sbjct: 39 QSSIALSDDGVHWILCNASPDIRAQLQAFAPMQPARALRDTGINAIVLLDSQIDHTTGLL 98
Query: 70 QLKEDLSLTIIGPHKDDAAMMGK 92
L+E + +
Sbjct: 99 SLREGCPHQVWCTDMVHQDLTTG 121
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit;
metallo-B-lactamase, PRE-mRNA processing, artemis,
V(D)J recombination; 2.10A {Homo sapiens} SCOP:
d.157.1.10 PDB: 2i7v_A
Length = 459
Score = 30.8 bits (68), Expect = 0.22
Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 7/60 (11%)
Query: 17 NCTFLFDEESLEAVVVDPG-----GDLDIIKDVIQSRNFHVKQIWITHGHVDHVGGAAQL 71
+C L + +++D G +D + + + + I+H H+DH G
Sbjct: 26 SCIILEFKGRK--IMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWF 83
>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA
processing, artemis, V(D)J recombination, double-strand
break repair; 2.50A {Saccharomyces cerevisiae} SCOP:
d.157.1.10
Length = 717
Score = 28.5 bits (63), Expect = 1.0
Identities = 10/68 (14%), Positives = 23/68 (33%), Gaps = 15/68 (22%)
Query: 7 HIVQVTPFKQNCTFLFDEESLEAVVVDPGGDLDIIKDVIQSRNFHVKQI---WITHGHVD 63
+V+ N T L D +P + I+ + +I ++ ++
Sbjct: 18 SVVRF----DNVTLLID------PGWNPSKVSY--EQCIKYWEKVIPEIDVIILSQPTIE 65
Query: 64 HVGGAAQL 71
+G + L
Sbjct: 66 CLGAHSLL 73
>2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A
{Escherichia coli} PDB: 2wym_A*
Length = 360
Score = 28.6 bits (63), Expect = 1.1
Identities = 13/117 (11%), Positives = 30/117 (25%), Gaps = 13/117 (11%)
Query: 55 IWITHGHVDHVGGAAQL----KEDLSLTIIGPHKDDAAMMGKVDEQARLLSIR------- 103
+ TH H DH+ + IGP +G + R + ++
Sbjct: 113 VLATHDHNDHIDVNVAAAVMQNCADDVPFIGPKTCVDLWIGWGVPKERCIVVKPGDVVKV 172
Query: 104 --MNARNASSDRWLQDGDTLLLGTHIFKVFHCPGHSPGHVIYVNFENNFAHLGDTLF 158
+ + + + ++ + H GD+ +
Sbjct: 173 KDIEIHALDAFDRTALITLPADQKAAGVLPDGMDDRAVNYLFKTPGGSLYHSGDSHY 229
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 1.3
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 16/37 (43%)
Query: 70 QLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIR--M 104
+L+ L L + DD+A A L+I+ M
Sbjct: 24 KLQASLKL-----YADDSA-------PA--LAIKATM 46
>2c5q_A RRAA-like protein YER010C; structural genomics,unknown function,
structural genomics, unknown function, pseudo-knot; HET:
CME; 1.70A {Saccharomyces cerevisiae}
Length = 240
Score = 27.8 bits (61), Expect = 1.8
Identities = 20/143 (13%), Positives = 33/143 (23%), Gaps = 17/143 (11%)
Query: 30 VVVDPGGDLDIIKDVIQSRNFHVKQIWITHGHVDHVGGAAQLKEDLSLTIIGPHKDDAAM 89
V+ P D + I + + + L K AM
Sbjct: 52 VLFAPIDDPRPAVNYID---------SVPPNSILVLALEP----HLQSQFHPFIKITQAM 98
Query: 90 MGKVDEQARLLSIRMNARNASSDRWLQDGDTLL-LGTHIFKVFHCPGHSPGHVIYVNFEN 148
G + + + ++D D L +F V V
Sbjct: 99 YG---GLMSTRAQYLKSNGTVVFGRIRDVDEHRTLNHPVFAYGVGSCAPKAVVKAVGTNV 155
Query: 149 NFAHLGDTLFRSSIGRTDILHGD 171
L +I D + GD
Sbjct: 156 QLKILTSDGVTQTICPGDYIAGD 178
>2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; 1.97A {Thermotoga
maritima} SCOP: d.157.1.7 PDB: 1ww1_A
Length = 280
Score = 27.8 bits (60), Expect = 2.0
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 52 VKQIWITHGHVDHVGGAAQL 71
K +++THGHVDH+ G +
Sbjct: 41 FKYVFLTHGHVDHIAGLWGV 60
>2eh0_A KLP, kinesin-like protein KIF1B; FHA domain, KIAA0591, KIAA1448,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 130
Score = 27.7 bits (61), Expect = 2.3
Identities = 7/31 (22%), Positives = 16/31 (51%)
Query: 104 MNARNASSDRWLQDGDTLLLGTHIFKVFHCP 134
+N + S L+ G+ +++G + F+ P
Sbjct: 84 VNGKRVSQPVQLRSGNRIIMGKNHVFRFNHP 114
>3ouz_A Biotin carboxylase; structural genomics, center for structural
genomics of infec diseases, csgid, alpha-beta fold,
cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter
jejuni subsp}
Length = 446
Score = 26.2 bits (58), Expect = 5.1
Identities = 7/70 (10%), Positives = 22/70 (31%), Gaps = 8/70 (11%)
Query: 28 EAVVVDPGG------DLDIIKDVIQSRNFHVKQIWITHGHVDHVGGAAQLKEDLSLTIIG 81
++ + ++ I + I+ +G + ++ ++ IG
Sbjct: 51 ASICIGKARSSESYLNIPAIIAAAEIAE--ADAIFPGYGFLSENQNFVEICAKHNIKFIG 108
Query: 82 PHKDDAAMMG 91
P + +M
Sbjct: 109 PSVEAMNLMS 118
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation,
structural genomics consortium, SGC, ATP-binding, coiled
coil, cytoplasm, cytoskeleton; 2.30A {Homo sapiens}
Length = 124
Score = 26.0 bits (57), Expect = 6.4
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 102 IRMNARNASSDRWLQDGDTLLLGTHIFKVFHCP 134
+N + SS L GD +L G + F + P
Sbjct: 92 TFVNGSSVSSPIQLHHGDRILWGNNHFFRLNLP 124
>3bv6_A Metal-dependent hydrolase; metallo protein, beta-lactamase like
fold, MCSG, structural genomics, PSI-2; 1.80A {Vibrio
cholerae o1 biovar eltor str}
Length = 379
Score = 25.9 bits (56), Expect = 7.0
Identities = 14/119 (11%), Positives = 37/119 (31%), Gaps = 16/119 (13%)
Query: 55 IWITHGHVDHVGGAAQLKE----DLSLTIIGPH-----------KDDAAMMGKVDEQARL 99
+ +H H DH+ + IGP + ++ KV + +
Sbjct: 137 VLASHDHADHIDVNVAAAVLQNCGEHVKFIGPQACVDLWLGWGVPQERCIVAKVGDVLEI 196
Query: 100 LSIRMNARNASSDRWLQDGDTLLLGTHIFKVFHCPGHSPGHVIYVNFENNFAHLGDTLF 158
+++ ++ DR + ++ + + + + H GD+ +
Sbjct: 197 GDVKIRVLDS-FDRTALVTLPKGVSSYDKAILDGMDERAVNYLIETSGGSVYHSGDSHY 254
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP:
b.26.1.2 PDB: 2aff_A*
Length = 128
Score = 25.8 bits (56), Expect = 7.9
Identities = 6/38 (15%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 102 IRMNARNASSDRWLQDGDTLLLGTHIFKVFHCPGHSPG 139
++N L+ GD + + F+ + G
Sbjct: 77 TQVNGSVIDEPVRLKHGDVITIIDRSFR-YENESLQNG 113
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide
repeat, beta-sandwich, transcription; HET: DNA TPO;
1.90A {Mycobacterium tuberculosis H37RV} SCOP: a.4.6.1
a.118.8.3 b.26.1.2 PDB: 2fez_A*
Length = 388
Score = 25.7 bits (55), Expect = 8.0
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 102 IRMNARNASSDRWLQDGDTLLLGTHIFKVFHCPGHSPG 139
+ + S L DGD + + H F F + G
Sbjct: 350 VHVQHERIRSAVTLNDGDHIRICDHEF-TFQISAGTHG 386
>3ifv_A PCNA; processivity factor, sliding clamp, halophilic, replication;
2.00A {Haloferax volcanii}
Length = 247
Score = 25.8 bits (56), Expect = 8.1
Identities = 34/221 (15%), Positives = 66/221 (29%), Gaps = 35/221 (15%)
Query: 8 IVQVTPFK----------QNCTFLFDEESLEAVVVDPG----GDLDIIKDVIQSRNFHVK 53
IV + C +EESL VDP DL + +S H
Sbjct: 5 IVSAATLRDALDSVSVLVDECKIRLNEESLSIRAVDPANVGMVDLTLDAAAFESYEAHGG 64
Query: 54 QIWITHGHVDHVGGAAQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDR 113
I + ++ + G + +DE+ R L+IR++ +
Sbjct: 65 VIGVNLSRLEE--------------VAGMAGAGDLIHLTLDEETRKLNIRIDGLS--YTL 108
Query: 114 WLQDGDTLLLGTHIFKV-FHCPGHSPGHVIYVNFENNFAHLGDTLFRSSIGRTDILHGDY 172
L D D++ I + G + + D + G + H +
Sbjct: 109 ALIDPDSIRQEPDIPDLDLAANIVLEGTHLDRGI-KAADMVSDHIRLRVDGAEETFHIEA 167
Query: 173 QQLINSINNKILPLGDEISFVCGHGPNSTIGRERRLNPFLK 213
+ + ++ + P ++ + +S L K
Sbjct: 168 EGDTDDVDLSLPP--ADLISIEAGAADSLFSL-DYLKDMNK 205
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A
{Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A*
3hb9_A*
Length = 1150
Score = 25.7 bits (56), Expect = 8.6
Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 9/71 (12%)
Query: 28 EAVVVDPGG-------DLDIIKDVIQSRNFHVKQIWITHGHVDHVGGAAQLKEDLSLTII 80
E+ +V +++ I DV + N V I +G + A+ + + I
Sbjct: 49 ESYLVGSDLGPAESYLNIERIIDVAKQAN--VDAIHPGYGFLSENEQFARRCAEEGIKFI 106
Query: 81 GPHKDDAAMMG 91
GPH + M G
Sbjct: 107 GPHLEHLDMFG 117
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate,
PLP-dependent enzyme, lyase, cytoplasm, acid resistance;
HET: LLP; 2.4A {Escherichia coli}
Length = 755
Score = 25.5 bits (55), Expect = 9.2
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 131 FHCPGHSPGHVIYVNFENNFAH--LGDTLFRSSIG 163
+ PGH G F H G+ LFR+ +G
Sbjct: 157 WAAPGHQGGVGFTKTPAGRFYHDYYGENLFRTDMG 191
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.322 0.140 0.427
Gapped
Lambda K H
0.267 0.0673 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,954,202
Number of extensions: 88261
Number of successful extensions: 388
Number of sequences better than 10.0: 1
Number of HSP's gapped: 320
Number of HSP's successfully gapped: 74
Length of query: 216
Length of database: 5,693,230
Length adjustment: 89
Effective length of query: 127
Effective length of database: 3,535,514
Effective search space: 449010278
Effective search space used: 449010278
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.1 bits)