Query gi|254780759|ref|YP_003065172.1| hypothetical protein CLIBASIA_03230 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 162
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 39220
Date Sun May 29 18:48:40 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780759.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 pfam11386 VERL Vitelline envel 85.0 1.1 2.7E-05 23.8 3.4 42 101-142 29-72 (78)
2 PRK10177 hypothetical protein; 65.9 6.1 0.00016 19.6 2.9 46 93-138 387-437 (452)
3 KOG0246 consensus 49.8 8.8 0.00022 18.8 1.4 59 61-124 271-331 (676)
4 COG3168 PilP Tfp pilus assembl 33.5 23 0.00058 16.5 1.4 57 4-62 3-67 (170)
5 KOG0237 consensus 32.0 20 0.0005 16.8 0.9 19 133-151 574-592 (788)
6 TIGR00311 aIF-2beta translatio 28.3 21 0.00055 16.6 0.6 56 91-153 67-126 (134)
7 COG3303 NrfA Formate-dependent 26.4 40 0.001 15.1 1.7 39 122-160 131-190 (501)
8 PRK06287 cobalt transport prot 26.1 23 0.00058 16.5 0.4 14 4-17 16-29 (105)
9 KOG1042 consensus 18.5 35 0.00089 15.5 0.1 31 110-140 530-564 (845)
10 pfam07403 DUF1505 Protein of u 16.5 72 0.0018 13.7 1.3 15 1-15 1-17 (114)
No 1
>pfam11386 VERL Vitelline envelope receptor for lysin. VERL, the egg vitelline envelope (VE) receptor for lysin, is a giant unbranched glycoprotein comprising 30% of the vitelline envelope. Lysin binds to VERL and creates a hole as VERL molecules lose cohesion and splay apart. These proteins are important in the mediation of fertilisation.
Probab=84.99 E-value=1.1 Score=23.84 Aligned_cols=42 Identities=36% Similarity=0.591 Sum_probs=31.6
Q ss_pred EECCEECCCCCC--CEEEEEEECCCCCCCCCEEEEECCCCCCCC
Q ss_conf 101111146677--415776311467787404899877788987
Q gi|254780759|r 101 TMNAEFSVPKND--EKYTISACASDDKGNKSTLCVECPSPSTPG 142 (162)
Q Consensus 101 tmnaefsvpknd--ekytisacasddkgnkstlcvecpspstpg 142 (162)
..-.-+|||||| +-|+++|---=..|--.-|-.||--|..|.
T Consensus 29 VF~GPYSvP~NDtv~lYtVta~l~WSeg~PT~lsieC~m~KS~~ 72 (78)
T pfam11386 29 VFRGPYSVPKNDTVVLYTVTARLKWSEGPPTYLSIECYMPKSPV 72 (78)
T ss_pred EEECCCCCCCCCEEEEEEEEEEEEECCCCCCCEEEEEECCCCCC
T ss_conf 98467246778768999988999854799841678870458877
No 2
>PRK10177 hypothetical protein; Provisional
Probab=65.94 E-value=6.1 Score=19.65 Aligned_cols=46 Identities=22% Similarity=0.278 Sum_probs=32.1
Q ss_pred CCCCCCCEEECCEECCCCCCCEEEEEEECCCCCCCCC-----EEEEECCCC
Q ss_conf 2555551010111114667741577631146778740-----489987778
Q gi|254780759|r 93 HDKEGSKHTMNAEFSVPKNDEKYTISACASDDKGNKS-----TLCVECPSP 138 (162)
Q Consensus 93 hdkegskhtmnaefsvpkndekytisacasddkgnks-----tlcvecpsp 138 (162)
.+.+|..-+|-+--+.|.....|+||+.|-|.|||.| ++-|.-|--
T Consensus 387 ~s~~~~~i~LP~y~~~~~a~N~Y~lsa~a~D~kGn~s~s~~i~i~Vt~P~~ 437 (452)
T PRK10177 387 NSAEGWTLIMPAWDNGEGASNRWRLSVVVEDNQGQRVSSNEITLTLTEPFD 437 (452)
T ss_pred CCCCCEEEECCCCCCCCCCCCEEEEEEEEEECCCCEECCCEEEEEEECCCC
T ss_conf 689861798878877888886799999999789973044037999937711
No 3
>KOG0246 consensus
Probab=49.81 E-value=8.8 Score=18.78 Aligned_cols=59 Identities=31% Similarity=0.305 Sum_probs=46.6
Q ss_pred CCCCE--EEHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCEEECCEECCCCCCCEEEEEEECCCC
Q ss_conf 67630--44788776442221100001257654025555510101111146677415776311467
Q gi|254780759|r 61 KNDEK--YTISSLTKKIESDTDFRREKATISLSAHDKEGSKHTMNAEFSVPKNDEKYTISACASDD 124 (162)
Q Consensus 61 kndek--ytissltkkiesdtdfrrekatislsahdkegskhtmnaefsvpkndekytisacasdd 124 (162)
.|++- ||+-.|.+-| |.+-+||+---....-|-.|||..+||--..|-.-.|-|-|+.|
T Consensus 271 sNe~VYrfTa~PlV~~I-----F~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~D 331 (676)
T KOG0246 271 SNELVYRFTAKPLVKTI-----FEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARD 331 (676)
T ss_pred CHHHHHHHHHHHHHHHH-----HHCCCEEEEEECCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 52789887556788999-----82772545651257887415514666764433456605555568
No 4
>COG3168 PilP Tfp pilus assembly protein PilP [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=33.47 E-value=23 Score=16.49 Aligned_cols=57 Identities=35% Similarity=0.402 Sum_probs=31.4
Q ss_pred EHHHHHHHHH-HHHHHHH--HHHHHHHCCCCCCCEEEEE-EEE----ECCCCCCCEEECCEECCCCC
Q ss_conf 0256999984-1056777--7665420221221002567-764----02555651010111114667
Q gi|254780759|r 4 RIAMLISFLA-SGCVAHA--LLTKKIESDTDSRHEKATI-SLS----AHDKEGSKHTMNAEFSVPKN 62 (162)
Q Consensus 4 riamlisfla-sgcvaha--lltkkiesdtdsrhekati-sls----ahdkegskhtmnaefsvpkn 62 (162)
.|..|||||+ +||-+.+ -|+. --+.+.++ -+++| .|. -.--+-|.+.|..-|++|+.
T Consensus 3 ~~~~l~slL~lvgC~~~~d~DL~~-wm~qvr~~-~~~~i~pLp~~~~~ea~~Ys~~k~r~PF~~~~~ 67 (170)
T COG3168 3 LILLLISLLALVGCGAGSDDDLNS-WMAQVRRE-AKAEIEPLPAPQPYEAFEYSAPKLRDPFSFPKR 67 (170)
T ss_pred CHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 036889999997504688477999-99998614-367654489888776754455445688865166
No 5
>KOG0237 consensus
Probab=31.99 E-value=20 Score=16.84 Aligned_cols=19 Identities=42% Similarity=0.658 Sum_probs=15.3
Q ss_pred EECCCCCCCCCCCCCHHHH
Q ss_conf 9877788987423201110
Q gi|254780759|r 133 VECPSPSTPGQYDLNHCAE 151 (162)
Q Consensus 133 vecpspstpgqydlnhcae 151 (162)
-|-|.--.||||||+-||-
T Consensus 574 aEMP~~Y~~g~yDlaG~Av 592 (788)
T KOG0237 574 AEMPGMYAPGEYDLAGFAV 592 (788)
T ss_pred CCCCCCCCCCCCCCCCCEE
T ss_conf 3477888988315455167
No 6
>TIGR00311 aIF-2beta translation initiation factor aIF-2, beta subunit, putative; InterPro: IPR004458 Archaeal transcription initiation factor 2 is, like its eukaryotic homologue, a heterotrimeric protein with alpha, beta and gamma subunits . It is thought play an essential role in the recognition of the correct codon for the start of translation, similar to the role of eukaryotic transcription initiation factor. The eukaryotic factor forms a ternary complex with the methionine initiator tRNA and GTP, which binds to the 40S ribosomal subunit as part of the 43S preinitiation complex . The beta and gamma subunits are responsible for recruiting the initiator tRNA and GTP, while the alpha subunit is involved in the regulation of the translation initiation process. The beta subunit has also been shown to interact with other transcription factors. All three subunits of the archaeal and eukaryotic factors are well conserved among the diverse species of eukaryotes and archaea, but do not occur in prokaryotes. The archaeal beta subunit has an unfolded N-terminal domain, a mixed alpha/beta core domain and a C-terminal zinc finger . The N-terminal region is thought to interact with the gamma subunit, while the central and C-terminal domains are thought to provide RNA-binding sites.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation.
Probab=28.31 E-value=21 Score=16.61 Aligned_cols=56 Identities=29% Similarity=0.522 Sum_probs=35.2
Q ss_pred EECCCCCCCEEECCEECCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCC----CCCCCCHHHHCC
Q ss_conf 402555551010111114667741577631146778740489987778898----742320111001
Q gi|254780759|r 91 SAHDKEGSKHTMNAEFSVPKNDEKYTISACASDDKGNKSTLCVECPSPSTP----GQYDLNHCAECE 153 (162)
Q Consensus 91 sahdkegskhtmnaefsvpkndekytisacasddkgnkstlcvecpspstp----gqydlnhcaece 153 (162)
+|-.-||..--+...|+----.+ --||--++-.+|-||-+|.|- |.-.|-.|.-|-
T Consensus 67 tAGnlegGRliLQgkft~~ll~~-------ri~Dyvr~yViCrECn~PDT~iIkEgRv~lLkC~ACG 126 (134)
T TIGR00311 67 TAGNLEGGRLILQGKFTESLLKK-------RIDDYVRKYVICRECNKPDTKIIKEGRVLLLKCLACG 126 (134)
T ss_pred CCCCCCCCEEEECCCCCHHHHHH-------HHHHHHHCEEEECCCCCCCCCEECHHHHHHHHHHCCC
T ss_conf 87634676023213258788775-------7756763234321381789624300135577640011
No 7
>COG3303 NrfA Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit [Inorganic ion transport and metabolism]
Probab=26.36 E-value=40 Score=15.11 Aligned_cols=39 Identities=33% Similarity=0.704 Sum_probs=27.8
Q ss_pred CCCCCCCCEEEEECCCCCCCC------CCC---------------CCHHHHCCCCCCCCC
Q ss_conf 467787404899877788987------423---------------201110014322467
Q gi|254780759|r 122 SDDKGNKSTLCVECPSPSTPG------QYD---------------LNHCAECENTTSKGL 160 (162)
Q Consensus 122 sddkgnkstlcvecpspstpg------qyd---------------lnhcaecenttskgl 160 (162)
.-+-|....-|-.|-||-+|- ..+ ---||.|.||+|+.+
T Consensus 131 ~a~~gp~pmACwsCkspdvprLI~~~Ge~~yF~~~Wa~ggpEivn~~GCADCHnt~s~df 190 (501)
T COG3303 131 TAEDGPQPMACWSCKSPDVPRLIQEKGEDGYFNGKWARGGPEIVNPLGCADCHNTASKDF 190 (501)
T ss_pred CCCCCCCCCEEECCCCCCCHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 743478762121079987068998606556304422047860137866412479877455
No 8
>PRK06287 cobalt transport protein CbiN; Validated
Probab=26.10 E-value=23 Score=16.46 Aligned_cols=14 Identities=50% Similarity=0.610 Sum_probs=10.5
Q ss_pred EHHHHHHHHHHHHH
Q ss_conf 02569999841056
Q gi|254780759|r 4 RIAMLISFLASGCV 17 (162)
Q Consensus 4 riamlisflasgcv 17 (162)
-|++|.+|||||--
T Consensus 16 lia~lapflAS~dP 29 (105)
T PRK06287 16 LIGILAPFLASGDP 29 (105)
T ss_pred HHHHHHHHCCCCCC
T ss_conf 99985112037898
No 9
>KOG1042 consensus
Probab=18.48 E-value=35 Score=15.45 Aligned_cols=31 Identities=39% Similarity=0.671 Sum_probs=17.7
Q ss_pred CCCCEEEEEEECCCCCC----CCCEEEEECCCCCC
Q ss_conf 67741577631146778----74048998777889
Q gi|254780759|r 110 KNDEKYTISACASDDKG----NKSTLCVECPSPST 140 (162)
Q Consensus 110 kndekytisacasddkg----nkstlcvecpspst 140 (162)
.+|-+...---+||.|. -|--+||+||-||.
T Consensus 530 ~~D~qmvvcil~~~nk~~Y~sIKK~~cvd~pvPsQ 564 (845)
T KOG1042 530 GADIQMVVCILPSDNKTRYDSIKKYLCVDCPVPSQ 564 (845)
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHCCCCCCCCCC
T ss_conf 47865999993388566677777622057898641
No 10
>pfam07403 DUF1505 Protein of unknown function (DUF1505). This family consists of several uncharacterized Caenorhabditis elegans proteins of around 115 resides in length. Members of this family contain 6 highly conserved cysteine residues. The function of this family is unknown.
Probab=16.48 E-value=72 Score=13.69 Aligned_cols=15 Identities=33% Similarity=0.355 Sum_probs=11.4
Q ss_pred CCEEH--HHHHHHHHHH
Q ss_conf 95102--5699998410
Q gi|254780759|r 1 MNFRI--AMLISFLASG 15 (162)
Q Consensus 1 mnfri--amlisflasg 15 (162)
|||++ +.|.+|.+.+
T Consensus 1 Mn~~~~tvlllsvtiA~ 17 (114)
T pfam07403 1 MNFFPLTVLLLSVTIAL 17 (114)
T ss_pred CCCCHHHHHHHHHHHHH
T ss_conf 97204657888876653
Done!