Query gi|254780759|ref|YP_003065172.1| hypothetical protein CLIBASIA_03230 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 162
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Mon May 30 13:28:20 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780759.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3f1j_A Matrix protein, GP18, P 9.5 22 0.00094 15.3 -1.9 28 79-109 94-121 (142)
2 2wy3_B UL16, uncharacterized p 7.9 61 0.0026 12.9 -0.2 19 137-158 105-123 (158)
3 1twf_L ABC10-alpha, DNA-direct 7.8 65 0.0027 12.7 -0.1 49 105-154 5-53 (70)
4 2ocz_A 3-dehydroquinate dehydr 6.6 96 0.0041 11.8 0.3 17 135-151 204-220 (231)
5 3mtx_A Protein MD-1; LY86, RP1 6.6 1.2E+02 0.0049 11.3 3.7 90 45-137 39-138 (151)
6 2ox1_A 3-dehydroquinate dehydr 6.2 1.2E+02 0.0052 11.2 1.7 24 125-149 165-188 (196)
7 3o1n_A 3-dehydroquinate dehydr 5.4 1.4E+02 0.0058 10.9 0.8 24 126-150 244-267 (276)
8 1co4_A AMT1, protein (activato 5.2 1.4E+02 0.0059 10.9 0.7 23 110-135 4-26 (42)
9 2rkz_M Fibronectin-binding pro 5.1 1.3E+02 0.0056 11.0 0.2 12 140-151 3-14 (26)
10 3js3_A 3-dehydroquinate dehydr 5.1 1.4E+02 0.006 10.8 0.9 23 126-149 224-246 (258)
No 1
>3f1j_A Matrix protein, GP18, P16; viral matrix protein, RNA binding, membrane binding, viruses, ssRNA negative-strand viruses, mononegavirales; HET: C5P; 2.65A {Borna disease virus}
Probab=9.54 E-value=22 Score=15.31 Aligned_cols=28 Identities=43% Similarity=0.504 Sum_probs=18.5
Q ss_pred CCCEEEEEEEEEEECCCCCCCEEECCEECCC
Q ss_conf 1100001257654025555510101111146
Q gi|254780759|r 79 TDFRREKATISLSAHDKEGSKHTMNAEFSVP 109 (162)
Q Consensus 79 tdfrrekatislsahdkegskhtmnaefsvp 109 (162)
.|--|.-.-|.| .+|.|||..||.|.|-
T Consensus 94 kdpir~~mfirl---~~eqskhainaafnvf 121 (142)
T 3f1j_A 94 KDPIRKYMFLRL---NKEQSKHAINAAFNVF 121 (142)
T ss_dssp SSCCCSEEEEEC---CHHHHHHHHHTTTCCC
T ss_pred CCCCCCEEEEEE---CHHHHHHHHHHHHHHH
T ss_conf 366631268870---6556567787777664
No 2
>2wy3_B UL16, uncharacterized protein UL16; immune system-viral protein complex, immune response, innate immunity, structural mimicry; HET: NAG PEU; 1.80A {Human herpesvirus 5 strain AD169}
Probab=7.89 E-value=61 Score=12.90 Aligned_cols=19 Identities=53% Similarity=0.973 Sum_probs=12.4
Q ss_pred CCCCCCCCCCCHHHHCCCCCCC
Q ss_conf 7889874232011100143224
Q gi|254780759|r 137 SPSTPGQYDLNHCAECENTTSK 158 (162)
Q Consensus 137 spstpgqydlnhcaecenttsk 158 (162)
..-|.|.|| |-.|+|.|.+
T Consensus 105 ~n~t~gryd---c~rc~ngt~~ 123 (158)
T 2wy3_B 105 TNLTVGRYD---CLRCENGTTK 123 (158)
T ss_dssp STTTCEEEE---EEEEETTEEE
T ss_pred CCCCCCCEE---EEEECCCCHH
T ss_conf 045443124---6885498252
No 3
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=7.77 E-value=65 Score=12.73 Aligned_cols=49 Identities=20% Similarity=0.491 Sum_probs=25.9
Q ss_pred EECCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCHHHHCCC
Q ss_conf 11146677415776311467787404899877788987423201110014
Q gi|254780759|r 105 EFSVPKNDEKYTISACASDDKGNKSTLCVECPSPSTPGQYDLNHCAECEN 154 (162)
Q Consensus 105 efsvpkndekytisacasddkgnkstlcvecpspstpgqydlnhcaecen 154 (162)
.|.||-+..-+....-.+. ...-.-+|.+|-..-.-..-|.-.|-||..
T Consensus 5 ~yqvPs~~~~~a~g~~~~~-~~~v~YiCg~Cg~~~~l~~~d~IrC~~CG~ 53 (70)
T 1twf_L 5 GFQIPTNLDAAAAGTSQAR-TATLKYICAECSSKLSLSRTDAVRCKDCGH 53 (70)
T ss_dssp ---------------------CCCCEECSSSCCEECCCTTSTTCCSSSCC
T ss_pred HCCCCCCCCCCCCCCCCCC-CCCEEEECCCCCCCEEECCCCCEECCCCCC
T ss_conf 0006767775654202688-851688886799811628999887784885
No 4
>2ocz_A 3-dehydroquinate dehydratase; structural genomics, dhqase, dehydroshikimate, PSI-2, protein structure initiative; HET: MSE; 1.85A {Streptococcus pyogenes serotype M1}
Probab=6.59 E-value=96 Score=11.79 Aligned_cols=17 Identities=35% Similarity=0.393 Sum_probs=12.4
Q ss_pred CCCCCCCCCCCCCHHHH
Q ss_conf 77788987423201110
Q gi|254780759|r 135 CPSPSTPGQYDLNHCAE 151 (162)
Q Consensus 135 cpspstpgqydlnhcae 151 (162)
-+.|+.|||+++....+
T Consensus 204 ~~~~sAPGQ~~~~el~~ 220 (231)
T 2ocz_A 204 LDHVSGPGQVTLNDMKR 220 (231)
T ss_dssp C------CCCBHHHHHH
T ss_pred CCCCCCCCCCCHHHHHH
T ss_conf 79998999877999999
No 5
>3mtx_A Protein MD-1; LY86, RP105 associated protein, immune system; HET: PGT PGE; 2.00A {Gallus gallus} PDB: 3mu3_A*
Probab=6.55 E-value=1.2e+02 Score=11.33 Aligned_cols=90 Identities=13% Similarity=0.227 Sum_probs=50.1
Q ss_pred CCCCCCEEECCEECCCCCCCEEEHHHHHHHHHCCCCCEEEEEEEE-------EEECCCCCCCEEECCEECCCCC---CCE
Q ss_conf 555651010111114667630447887764422211000012576-------5402555551010111114667---741
Q gi|254780759|r 45 DKEGSKHTMNAEFSVPKNDEKYTISSLTKKIESDTDFRREKATIS-------LSAHDKEGSKHTMNAEFSVPKN---DEK 114 (162)
Q Consensus 45 dkegskhtmnaefsvpkndekytissltkkiesdtdfrrekatis-------lsahdkegskhtmnaefsvpkn---dek 114 (162)
.+.|++-++.+.|....+-++- ...+.-++..-+-.. .+..+- +.---+.|..-+...++.+|.. .-+
T Consensus 39 ~~kG~n~~i~~~f~~~~di~~l-~v~v~~~~~gi~lp~-~~~d~C~~~~~~~~~CPl~kG~~~~~~~~~~ip~~~~P~g~ 116 (151)
T 3mtx_A 39 DVTTHTFDIRAAMVLRQSIKEL-YAKVDLIINGKTVLS-YSETLCGPGLSKLIFCGKKKGEHLYYEGPITLGIKEIPQRD 116 (151)
T ss_dssp GGGGTEEEEEEEEECCSCCSSE-EEEEEEEETTEEEEE-EEEEEESTTCCCSTTTTCCTTCEEEEEEEEECCCSSCCCEE
T ss_pred CCCCCEEEEEEEEEECCCCHHE-EEEEEEEECCEECCC-CCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCEE
T ss_conf 3308608999999978430021-999999999898454-58876677886402099688957898886736643379867
Q ss_pred EEEEEECCCCCCCCCEEEEECCC
Q ss_conf 57763114677874048998777
Q gi|254780759|r 115 YTISACASDDKGNKSTLCVECPS 137 (162)
Q Consensus 115 ytisacasddkgnkstlcvecps 137 (162)
|++.+-..|+.|+. -.|++-+-
T Consensus 117 y~v~~~l~~~~~~~-i~C~~~~I 138 (151)
T 3mtx_A 117 YTITARLTNEDRAT-VACADFTV 138 (151)
T ss_dssp EEEEEEEEETTSCE-EEEEEEEE
T ss_pred EEEEEEEECCCCCE-EEEEEEEC
T ss_conf 99999999499999-99999864
No 6
>2ox1_A 3-dehydroquinate dehydratase; (beta-alpha)8 barrel, lyase; 2.33A {Archaeoglobus fulgidus}
Probab=6.15 E-value=1.2e+02 Score=11.21 Aligned_cols=24 Identities=33% Similarity=0.618 Sum_probs=16.0
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCHH
Q ss_conf 7874048998777889874232011
Q gi|254780759|r 125 KGNKSTLCVECPSPSTPGQYDLNHC 149 (162)
Q Consensus 125 kgnkstlcvecpspstpgqydlnhc 149 (162)
-|..-|.|. -+.|+.|||.++..-
T Consensus 165 ~GS~~tya~-~~~~sAPGQ~~~~el 188 (196)
T 2ox1_A 165 LGSPFIYCY-VGSPKAPGQISLDDA 188 (196)
T ss_dssp TTCSEEEEE-SSSCSSTTCCBHHHH
T ss_pred HCCCEEECC-CCCCCCCCCCCHHHH
T ss_conf 698169633-799989999889999
No 7
>3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3lb0_A* 3l2i_A* 3nnt_A* 3m7w_A* 1gqn_A 1l9w_A* 1qfe_A*
Probab=5.40 E-value=1.4e+02 Score=10.94 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=14.7
Q ss_pred CCCCEEEEECCCCCCCCCCCCCHHH
Q ss_conf 8740489987778898742320111
Q gi|254780759|r 126 GNKSTLCVECPSPSTPGQYDLNHCA 150 (162)
Q Consensus 126 gnkstlcvecpspstpgqydlnhca 150 (162)
|..-|.+. -+.||.|||.++....
T Consensus 244 GS~~Tfa~-l~~~sAPGQi~v~~l~ 267 (276)
T 3o1n_A 244 GSAATFGA-VKKASAPGAISVADLR 267 (276)
T ss_dssp TCCEEECB-SSCCSSTTCCBHHHHH
T ss_pred CCCEEECC-CCCCCCCCCCCHHHHH
T ss_conf 98258357-8999899986799999
No 8
>1co4_A AMT1, protein (activator of metallothionein 1); metal regulation, translation/regulation protein complex; NMR {Synthetic} SCOP: g.47.1.1
Probab=5.20 E-value=1.4e+02 Score=10.87 Aligned_cols=23 Identities=39% Similarity=0.523 Sum_probs=15.2
Q ss_pred CCCCEEEEEEECCCCCCCCCEEEEEC
Q ss_conf 67741577631146778740489987
Q gi|254780759|r 110 KNDEKYTISACASDDKGNKSTLCVEC 135 (162)
Q Consensus 110 kndekytisacasddkgnkstlcvec 135 (162)
-|++|| ||.+=-+|..+.-|-.-
T Consensus 4 i~g~Ky---AC~~CIrGHR~S~C~H~ 26 (42)
T 1co4_A 4 INGVKY---ACDSCIKSHKAAQCEHN 26 (42)
T ss_dssp ETTEEE---EETTTTTTSGGGGCCCC
T ss_pred ECCCEE---EHHHHHCCCCCCCCCCC
T ss_conf 878066---38777451522545358
No 9
>2rkz_M Fibronectin-binding protein; fibrronectin, 2F13F1, beta zipper, staphylococcus aureus, acute phase, alternative splicing, cell adhesion; 2.00A {Homo sapiens}
Probab=5.10 E-value=1.3e+02 Score=11.01 Aligned_cols=12 Identities=42% Similarity=0.581 Sum_probs=7.3
Q ss_pred CCCCCCCCHHHH
Q ss_conf 987423201110
Q gi|254780759|r 140 TPGQYDLNHCAE 151 (162)
Q Consensus 140 tpgqydlnhcae 151 (162)
-.||||-|-...
T Consensus 3 ltgqydknlvtt 14 (26)
T 2rkz_M 3 LTGQYDKNLVTT 14 (26)
T ss_pred CCCCCCCCCEEE
T ss_conf 345125441001
No 10
>3js3_A 3-dehydroquinate dehydratase; AROD, covalent reaction intermediate, amino-acid biosynthesis, aromatic amino acid biosynthesis, lyase; HET: DHS; 2.20A {Clostridium difficile 630}
Probab=5.08 E-value=1.4e+02 Score=10.82 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=14.5
Q ss_pred CCCCEEEEECCCCCCCCCCCCCHH
Q ss_conf 874048998777889874232011
Q gi|254780759|r 126 GNKSTLCVECPSPSTPGQYDLNHC 149 (162)
Q Consensus 126 gnkstlcvecpspstpgqydlnhc 149 (162)
|..-|.|. .+.|+.|||.++..-
T Consensus 224 GS~~tfa~-~~~~sAPGQls~~~l 246 (258)
T 3js3_A 224 GSALTFGA-AKSVSAPGQISFKEL 246 (258)
T ss_dssp CBCEEECB-SSSCSSTTCCBHHHH
T ss_pred CCCEEECC-CCCCCCCCCCCHHHH
T ss_conf 89537346-899999998779999
Done!