HHsearch alignment for GI: 254780760 and conserved domain: COG0009
>COG0009 SUA5 Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=444.88 Aligned_cols=203 Identities=43% Similarity=0.648 Sum_probs=188.0
Q ss_pred EEECCCC----HHHHHHHHHHHHCCCEEEEECCCHHEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHCC
Q ss_conf 4431799----999999999997598599907780004027999999999999708881065499967989977642005
Q gi|254780760|r 2 QIMSITD----SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77 (330)
Q Consensus 2 ~~~~~~d----~~~i~~a~~~L~~G~~v~~PTeTvYGlg~~a~~~~av~~I~~~K~Rp~~~Pli~~v~~~~~~~~~~~~~ 77 (330)
T Consensus 2 ~~~~~~~~~~~~~~~~~a~~~l~~G~vVa~PTeTVYGLg~~~~~~~Av~~i~~~K~Rp~~kpLil~~~~~~~l~~~~~~~ 81 (211)
T COG0009 2 QIFMIHPENPQPRAIEKAVEALRKGGVVAYPTDTVYGLGADATNEEAVERLYEIKQRPSDKPLILHVASLEQLKEYADVP 81 (211)
T ss_pred CEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCCHHEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHCCC
T ss_conf 32422766621589999999997699899876644301127898999999999838998998799958999999884489
Q ss_pred CHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHH
Q ss_conf 204689985058871886146787811655544457633224156-6766642014212123433348543301777766
Q gi|254780760|r 78 PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILS 156 (330)
Q Consensus 78 ~~~~~l~~~fwPGplT~il~~~~~~~i~~~~t~~~~tvavRiP~h-~~~~ll~~~~~Piaa~SAN~sG~~Spt~a~~v~~ 156 (330)
T Consensus 82 ~~~~~l~~~fwPGPlT~Il~~~~~~~~-~~~~~~~~TiavRvP~hpi~~~Li~~~G~Pl~stSANlsG~ps~tt~~ev~- 159 (211)
T COG0009 82 DVARKLLKAFWPGPLTFILPATKEVPR-RLVTAGLSTIAVRVPDHPIALALIEALGEPLASTSANLSGQPSPTTAEEVR- 159 (211)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCH-HHHCCCCCEEEEECCCCHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHH-
T ss_conf 999999997199975999868888972-432589970899888999999999984992487676768988989999999-
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCHHHHHHHCC
Q ss_conf 440655421127664566767306996269824344248878888774227
Q gi|254780760|r 157 SSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS 207 (330)
Q Consensus 157 ~~~~~~i~~ildgg~~~~GieSTiid~~~~~~~~IlR~G~i~~~~i~~~l~ 207 (330)
T Consensus 160 ~~~~~~v~~iidgg~~~~g~pSTIiDlt~-~~~~ilR~G~i~~~~i~~~~~ 209 (211)
T COG0009 160 ADFGGQVDLIIDGGPCRGGLPSTIIDLTD-DPPRILRPGAISLEEIEKLLG 209 (211)
T ss_pred HHHCCCCEEEEECCCCCCCCCCEEEECCC-CCCEEEECCCCCHHHHHHHHC
T ss_conf 98551471998088667999736897789-974798389988999998726