HHsearch alignment for GI: 254780760 and conserved domain: PRK10634
>PRK10634 putative ribosome maturation factor; Provisional.
Probab=100.00 E-value=0 Score=368.58 Aligned_cols=182 Identities=26% Similarity=0.386 Sum_probs=164.8
Q ss_pred CCHHHHHHHHHHHHCCCEEEEECCCHHEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHH---CCCHHHHH
Q ss_conf 999999999999975985999077800040279999999999997088810654999679899776420---05204689
Q gi|254780760|r 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS---VDPLSLHL 83 (330)
Q Consensus 7 ~d~~~i~~a~~~L~~G~~v~~PTeTvYGlg~~a~~~~av~~I~~~K~Rp~~~Pli~~v~~~~~~~~~~~---~~~~~~~l 83 (330)
T Consensus 5 ~~~~ai~~Av~~L~~GgvV~~PTdTvYGlg~da~~~~Av~~i~~iK~R~~~kpl~~l~~~~~~l~~~~~~~~~~~~~~~~ 84 (190)
T PRK10634 5 LQGDAIAAAVDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQLKPYIDDSMLTDAQRET 84 (190)
T ss_pred CCHHHHHHHHHHHHCCCEEEEECCCHHHEEECCCCHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHHHHCCCCHHHHHH
T ss_conf 57899999999997699899926874430255899999999999758988899689979999999987523189999999
Q ss_pred HHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 985058871886146787811655544457633224156-6766642014212123433348543301777766440655
Q gi|254780760|r 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKE 162 (330)
Q Consensus 84 ~~~fwPGplT~il~~~~~~~i~~~~t~~~~tvavRiP~h-~~~~ll~~~~~Piaa~SAN~sG~~Spt~a~~v~~~~~~~~ 162 (330)
T Consensus 85 ~~~~wPGplT~Il~~~--~~~p~~l~~~~~tIgvRiP~~~~~~~L~~~~g~Pl~sTSAN~sG~~~~~~~~ei~-~~f~~~ 161 (190)
T PRK10634 85 IFSCWPGPVTFVFPAP--ATTPRWLTGRFDSLAVRVTDHPLVVALCQAYGKPLVSTSANLSGLPPCRTVEEVR-AQFGAA 161 (190)
T ss_pred HHHCCCCCEEEEEECC--CCCCHHHCCCCCCEEEECCCCHHHHHHHHHHCCEEEECCCCCCCCCCCCCHHHHH-HHHCCC
T ss_conf 9715999849998788--7767522389996027766999999999983997898987768998989999999-985788
Q ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCEEEEECC
Q ss_conf 421127664566767306996269824344248
Q gi|254780760|r 163 IPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 (330)
Q Consensus 163 i~~ildgg~~~~GieSTiid~~~~~~~~IlR~G 195 (330)
T Consensus 162 v~i-v~g~~~~~~~pStIvD~~~-g--eilR~G 190 (190)
T PRK10634 162 FPV-VPGETGGRLNPSEIRDALT-G--ELFRQG 190 (190)
T ss_pred CEE-EECCCCCCCCCCEEEECCC-C--CEECCC
T ss_conf 569-9578788889937598999-9--875187