HHsearch alignment of GI: 254780760 and MMDB domain: 1hru_A_
>1hru_A (A:) YRDC gene product; protein folding, structural genomics, RNA, SUA5, PSI, protein structure initiative, midwest center for structural genomics; 2.00A {Escherichia coli}
Probab=100.00 E-value=0 Score=358.56 Aligned_cols=179 Identities=26% Similarity=0.370 Sum_probs=167.1
Q ss_pred CHHHHHHHHHHHHCCCEEEEECCCHHEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHH---CCCHHHHHH
Q ss_conf 99999999999975985999077800040279999999999997088810654999679899776420---052046899
Q gi|254780760|r 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS---VDPLSLHLA 84 (330)
Q Consensus 8 d~~~i~~a~~~L~~G~~v~~PTeTvYGlg~~a~~~~av~~I~~~K~Rp~~~Pli~~v~~~~~~~~~~~---~~~~~~~l~ 84 (330)
+.+.+++|+++|++|++|+|||||||||+|+++|++||+|||++|+||.+||++++++++++++.|++ +++.+++|+
T Consensus 6 ~~~~i~~a~~~L~~G~vvi~PTdTvYgL~~~~~~~~Av~ri~~iK~R~~~kp~~ilv~~~~~~~~~~~~~~~~~~~~~l~ 85 (188)
T 1hru_A 6 QRDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVXRLLELKQRPVDKGLILIAANYEQLKPYIDDTXLTDVQRETI 85 (188)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECSSSEEEEECTTCHHHHHHHHHHHTCCGGGCCEEEESSHHHHGGGCCCTTCCHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCEEEEECCCEEEEEEECCCHHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 88999999999976998999879645899928998999999998099877881256125665344520456649999998
Q ss_pred HHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 85058871886146787811655544457633224156-67666420142121234333485433017777664406554
Q gi|254780760|r 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEI 163 (330)
Q Consensus 85 ~~fwPGplT~il~~~~~~~i~~~~t~~~~tvavRiP~h-~~~~ll~~~~~Piaa~SAN~sG~~Spt~a~~v~~~~~~~~i 163 (330)
++|||||+|+|++.+ ..+++.++++.+|||+|||+| ++++|++.+|.||++||||+||++++++++++. +.|++.+
T Consensus 86 ~~~wPgplT~i~~~~--~~~~~~~~~~~~tigiRiP~~~~~~~ll~~~g~Pl~~TSAN~sG~~~~~~~~~i~-~~~~~~v 162 (188)
T 1hru_A 86 FSRWPGPVTFVFPAP--ATTPRWLTGRFDSLAVRVTDHPLVVALCQAYGKPLVSTSANLSGLPPCRTVDEVR-AQFGAAF 162 (188)
T ss_dssp HTTCSSSEEEEEECC--TTSCHHHHTTSSEEEEEECCCHHHHHHHHHHTSCEEEEESCCTTSCCCCSHHHHH-HHHCTTS
T ss_pred HCCCCCCCEEECCCC--CCCCHHHHCCCCCEEEECCCCHHHHHHHHHHCCEEEECCCCCCCCCCCCCHHHHH-HHHCCCC
T ss_conf 637999848741325--6788567245761699825975789999982998998874568999989999999-9817887
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCCCEEEEE
Q ss_conf 211276645667673069962698243442
Q gi|254780760|r 164 PLIIDGGISKIGLESTIVNVQCEKKVRILR 193 (330)
Q Consensus 164 ~~ildgg~~~~GieSTiid~~~~~~~~IlR 193 (330)
|+++|+|.|. |.+||||||++ + +|||
T Consensus 163 d~iid~g~~~-~~~STIvd~~~-~--~ilR 188 (188)
T 1hru_A 163 PVVPGETGGR-LNPSEIRDALT-G--ELFR 188 (188)
T ss_dssp CBCCCCCCSS-CCCCEEEETTT-S--SBCC
T ss_pred EEEECCCCCC-CCCCEEEECCC-C--EEEC
T ss_conf 8997999877-89988898989-9--3749