HHsearch alignment of GI: 254780760 and MMDB domain: 1k7j_A_
>1k7j_A (A:) Protein YCIO, protein TF1; structural genomics, X-RAY crystallography, putative translation factor, PSI, protein structure initiative; 1.40A {Escherichia coli}
Probab=100.00 E-value=0 Score=373.70 Aligned_cols=192 Identities=23% Similarity=0.336 Sum_probs=176.2
Q ss_pred CCHHHHHHHHHHHHCCCEEEEECCCHHEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHCCCHHHHHHHH
Q ss_conf 99999999999997598599907780004027999999999999708881065499967989977642005204689985
Q gi|254780760|r 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKL 86 (330)
Q Consensus 7 ~d~~~i~~a~~~L~~G~~v~~PTeTvYGlg~~a~~~~av~~I~~~K~Rp~~~Pli~~v~~~~~~~~~~~~~~~~~~l~~~ 86 (330)
.+.+.+++|+++|++|++|+|||||||||||+++|++||+|||++|+||.+|||+++++++++++.|+++++..++|+++
T Consensus 12 ~~~~~~~~a~~~L~~G~iii~PTdTvYgl~~~~~n~~Av~ri~~~K~R~~~Kpl~il~~~~~~~~~~~~~~~~~~~l~~~ 91 (206)
T 1k7j_A 12 PQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAXERICRIRQLPDGHNFTLXCRDLSELSTYSFVDNVAFRLXKN 91 (206)
T ss_dssp CCHHHHHHHHHHHHTTCCEEEEETTEEEEEEETTCHHHHHHHHHHHTCCTTCCCEEECSSHHHHHHHBCCCHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHCCCEEEEECCCEEEEEECCCCHHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89899999999997699899976856478883799799999998528985578168503088887540025899999874
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHCCCEEECCCCCCCCCCCC-CHHHHHHHHHHCCCCC
Q ss_conf 058871886146787811655544457633224156-67666420142121234333485433-0177776644065542
Q gi|254780760|r 87 FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISI-TNVKHILSSSICKEIP 164 (330)
Q Consensus 87 fwPGplT~il~~~~~~~i~~~~t~~~~tvavRiP~h-~~~~ll~~~~~Piaa~SAN~sG~~Sp-t~a~~v~~~~~~~~i~ 164 (330)
|||||+|+|+|.++. ....+++.+.+|||+|||+| ++++|++.+|.||++||||+||++++ +..+++. ++|++.+|
T Consensus 92 ~wPgplTli~~~~~~-~~~~~~~~~~~tvgiRiP~~~~~~~ll~~~g~PL~~TSAN~sG~~~~~~~~e~i~-~~~~~~vd 169 (206)
T 1k7j_A 92 NTPGNYTFILKGTKE-VPRRLLQEKRKTIGXRVPSNPIAQALLEALGEPXLSTSLXLPGSEFTESDPEEIK-DRLEKQVD 169 (206)
T ss_dssp SCSSSEEEEEEBCTT-SCGGGSCTTTCEEEEECCCSHHHHHHHHHHCSCEEEEECBCTTCSSBCCCHHHHH-HHHTTTCS
T ss_pred CCCCCCEEEECCCCC-CCHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHH-HHHCCCCE
T ss_conf 446872367437765-5234422787416686249879999999838985324445888876887799999-98567743
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCHHHH
Q ss_conf 11276645667673069962698243442488788887
Q gi|254780760|r 165 LIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202 (330)
Q Consensus 165 ~ildgg~~~~GieSTiid~~~~~~~~IlR~G~i~~~~i 202 (330)
+|+|||.|. |.+|||||+++ ++++|||+|+++.++|
T Consensus 170 ~vid~g~~~-~~~STIid~~~-~~~~ilR~G~i~~~~i 205 (206)
T 1k7j_A 170 LIIHGGYLG-QKPTTVIDLTD-DTPVVVREGVGDVKPF 205 (206)
T ss_dssp EEEECCCCC-SCCCEEEECGG-GCCEEEECCSSCSGGG
T ss_pred EEEECCCCC-CCCCEEEEEEC-CCEEEECCCCCCCHHH
T ss_conf 998389728-98995899879-9639984489861432