HHsearch results for GI: 254780760 and protein with PDBid: 1hru_A

>1hru_A YRDC gene product; protein folding, structural genomics, RNA, SUA5, PSI, protein structure initiative, midwest center for structural genomics; 2.00A {Escherichia coli} SCOP: d.115.1.1
Probab=100.00  E-value=0  Score=340.89  Aligned_cols=179  Identities=26%  Similarity=0.357  Sum_probs=161.0

Q ss_pred             CHHHHHHHHHHHHCCCEEEEECCCHHEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHH---CCCHHHHHH
Q ss_conf             99999999999975985999077800040279999999999997088810654999679899776420---052046899
Q gi|254780760|r    8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS---VDPLSLHLA   84 (330)
Q Consensus         8 d~~~i~~a~~~L~~G~~v~~PTeTvYGlg~~a~~~~av~~I~~~K~Rp~~~Pli~~v~~~~~~~~~~~---~~~~~~~l~   84 (330)
                      +.+.|++|+++|++|++|+|||||||||||||+|++||+|||++|+||.+|||++++++++++.+|++   ....+.+++
T Consensus         6 ~~~~i~~a~~~L~~G~iv~~PTdt~Ygl~~~a~n~~av~ri~~lK~R~~~kp~~vl~~~~~~~~~~~~~~~~~~~~~~~~   85 (188)
T 1hru_A            6 QRDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQLKPYIDDTMLTDVQRETI   85 (188)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEECSSSEEEEECTTCHHHHHHHHHHHTCCGGGCCEEEESSHHHHGGGCCCTTCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHCCCEEEEECCCHHEEEEECCCHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHCCCCCHHHHHHH
T ss_conf             88999999999977998999879603378808998999999998389966783488645777766621123429999999


Q ss_pred             HHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf             85058871886146787811655544457633224156-67666420142121234333485433017777664406554
Q gi|254780760|r   85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEI  163 (330)
Q Consensus        85 ~~fwPGplT~il~~~~~~~i~~~~t~~~~tvavRiP~h-~~~~ll~~~~~Piaa~SAN~sG~~Spt~a~~v~~~~~~~~i  163 (330)
                      ++|||||+|+|+|.+  ..++..++++.+|||||+|+| ++++|++++|.||++||||+||++++++.+++. ++|++.+
T Consensus        86 ~~~~PgplT~il~~~--~~~~~~~~~~~~ti~vRip~~~~~~~l~~~~g~Pl~~TSAN~sG~~~~~~~~~i~-~~~~~~v  162 (188)
T 1hru_A           86 FSRWPGPVTFVFPAP--ATTPRWLTGRFDSLAVRVTDHPLVVALCQAYGKPLVSTSANLSGLPPCRTVDEVR-AQFGAAF  162 (188)
T ss_dssp             HTTCSSSEEEEEECC--TTSCHHHHTTSSEEEEEECCCHHHHHHHHHHTSCEEEEESCCTTSCCCCSHHHHH-HHHCTTS
T ss_pred             HHCCCCCCCEECCCC--CCCCHHHCCCCEEEEEECCCHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHH-HHHCCCC
T ss_conf             708998842003654--5564010354404654148719999999984995685422568899989999999-9837887


Q ss_pred             CCCCCCCCCCCCCCCEEEEEECCCCEEEEE
Q ss_conf             211276645667673069962698243442
Q gi|254780760|r  164 PLIIDGGISKIGLESTIVNVQCEKKVRILR  193 (330)
Q Consensus       164 ~~ildgg~~~~GieSTiid~~~~~~~~IlR  193 (330)
                      ++++|++.+ .+.+|||||+++ +  +|+|
T Consensus       163 d~i~~~~~~-~~~pSTIid~~~-~--~iiR  188 (188)
T 1hru_A          163 PVVPGETGG-RLNPSEIRDALT-G--ELFR  188 (188)
T ss_dssp             CBCCCCCCS-SCCCCEEEETTT-S--SBCC
T ss_pred             EEEECCCCC-CCCCCEEEECCC-C--EEEC
T ss_conf             799789877-789867998979-9--8739