HHsearch results for GI: 254780760 and protein with PDBid: 1hru_A
>1hru_A YRDC gene product; protein folding, structural genomics, RNA, SUA5, PSI, protein structure initiative, midwest center for structural genomics; 2.00A {Escherichia coli} SCOP: d.115.1.1
Probab=100.00 E-value=0 Score=340.89 Aligned_cols=179 Identities=26% Similarity=0.357 Sum_probs=161.0
Q ss_pred CHHHHHHHHHHHHCCCEEEEECCCHHEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHH---CCCHHHHHH
Q ss_conf 99999999999975985999077800040279999999999997088810654999679899776420---052046899
Q gi|254780760|r 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS---VDPLSLHLA 84 (330)
Q Consensus 8 d~~~i~~a~~~L~~G~~v~~PTeTvYGlg~~a~~~~av~~I~~~K~Rp~~~Pli~~v~~~~~~~~~~~---~~~~~~~l~ 84 (330)
+.+.|++|+++|++|++|+|||||||||||||+|++||+|||++|+||.+|||++++++++++.+|++ ....+.+++
T Consensus 6 ~~~~i~~a~~~L~~G~iv~~PTdt~Ygl~~~a~n~~av~ri~~lK~R~~~kp~~vl~~~~~~~~~~~~~~~~~~~~~~~~ 85 (188)
T 1hru_A 6 QRDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQLKPYIDDTMLTDVQRETI 85 (188)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECSSSEEEEECTTCHHHHHHHHHHHTCCGGGCCEEEESSHHHHGGGCCCTTCCHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCEEEEECCCHHEEEEECCCHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 88999999999977998999879603378808998999999998389966783488645777766621123429999999
Q ss_pred HHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 85058871886146787811655544457633224156-67666420142121234333485433017777664406554
Q gi|254780760|r 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEI 163 (330)
Q Consensus 85 ~~fwPGplT~il~~~~~~~i~~~~t~~~~tvavRiP~h-~~~~ll~~~~~Piaa~SAN~sG~~Spt~a~~v~~~~~~~~i 163 (330)
++|||||+|+|+|.+ ..++..++++.+|||||+|+| ++++|++++|.||++||||+||++++++.+++. ++|++.+
T Consensus 86 ~~~~PgplT~il~~~--~~~~~~~~~~~~ti~vRip~~~~~~~l~~~~g~Pl~~TSAN~sG~~~~~~~~~i~-~~~~~~v 162 (188)
T 1hru_A 86 FSRWPGPVTFVFPAP--ATTPRWLTGRFDSLAVRVTDHPLVVALCQAYGKPLVSTSANLSGLPPCRTVDEVR-AQFGAAF 162 (188)
T ss_dssp HTTCSSSEEEEEECC--TTSCHHHHTTSSEEEEEECCCHHHHHHHHHHTSCEEEEESCCTTSCCCCSHHHHH-HHHCTTS
T ss_pred HHCCCCCCCEECCCC--CCCCHHHCCCCEEEEEECCCHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHH-HHHCCCC
T ss_conf 708998842003654--5564010354404654148719999999984995685422568899989999999-9837887
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCCCEEEEE
Q ss_conf 211276645667673069962698243442
Q gi|254780760|r 164 PLIIDGGISKIGLESTIVNVQCEKKVRILR 193 (330)
Q Consensus 164 ~~ildgg~~~~GieSTiid~~~~~~~~IlR 193 (330)
++++|++.+ .+.+|||||+++ + +|+|
T Consensus 163 d~i~~~~~~-~~~pSTIid~~~-~--~iiR 188 (188)
T 1hru_A 163 PVVPGETGG-RLNPSEIRDALT-G--ELFR 188 (188)
T ss_dssp CBCCCCCCS-SCCCCEEEETTT-S--SBCC
T ss_pred EEEECCCCC-CCCCCEEEECCC-C--EEEC
T ss_conf 799789877-789867998979-9--8739