HHsearch results for GI: 254780760 and protein with PDBid: 1k7j_A
>1k7j_A Protein YCIO, protein TF1; structural genomics, X-RAY crystallography, putative translation factor, PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: d.115.1.1 PDB: 1kk9_A
Probab=100.00 E-value=0 Score=365.91 Aligned_cols=192 Identities=23% Similarity=0.344 Sum_probs=173.2
Q ss_pred CCHHHHHHHHHHHHCCCEEEEECCCHHEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHCCCHHHHHHHH
Q ss_conf 99999999999997598599907780004027999999999999708881065499967989977642005204689985
Q gi|254780760|r 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKL 86 (330)
Q Consensus 7 ~d~~~i~~a~~~L~~G~~v~~PTeTvYGlg~~a~~~~av~~I~~~K~Rp~~~Pli~~v~~~~~~~~~~~~~~~~~~l~~~ 86 (330)
.+++.|++|+++|++|++|+|||||||||||||+|++||+|||++|+||.+|||+++++++++++.|+.+++.+++|+++
T Consensus 12 p~~~~i~~a~~~L~~G~vv~~PTdtvYgl~cda~n~~Av~ri~~iK~R~~~kpl~ll~~~~~~~~~~~~~~~~~~~l~~~ 91 (206)
T 1k7j_A 12 PQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELSTYSFVDNVAFRLMKN 91 (206)
T ss_dssp CCHHHHHHHHHHHHTTCCEEEEETTEEEEEEETTCHHHHHHHHHHHTCCTTCCCEEECSSHHHHHHHBCCCHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHCCCEEEEECCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHC
T ss_conf 89899999999997699899977956488884788899999999607998888048613088899987655899987410
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHCCCEEECCCCCCCCCC-CCCHHHHHHHHHHCCCCC
Q ss_conf 058871886146787811655544457633224156-676664201421212343334854-330177776644065542
Q gi|254780760|r 87 FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIP 164 (330)
Q Consensus 87 fwPGplT~il~~~~~~~i~~~~t~~~~tvavRiP~h-~~~~ll~~~~~Piaa~SAN~sG~~-Spt~a~~v~~~~~~~~i~ 164 (330)
|||||+|+|++.++. ..+..++++.++||+|+|+| ++++|++.+|.||++||||+||.+ +.+..+++. +.|++.+|
T Consensus 92 ~wPgplT~i~~~~~~-~~~~~~~~~~~tv~vRip~~~~~~~L~~~~~~Pl~~TSAN~sG~~~~~~~~~~i~-~~~~~~vd 169 (206)
T 1k7j_A 92 NTPGNYTFILKGTKE-VPRRLLQEKRKTIGMRVPSNPIAQALLEALGEPMLSTSLMLPGSEFTESDPEEIK-DRLEKQVD 169 (206)
T ss_dssp SCSSSEEEEEEBCTT-SCGGGSCTTTCEEEEECCCSHHHHHHHHHHCSCEEEEECBCTTCSSBCCCHHHHH-HHHTTTCS
T ss_pred CCCCCEEEEECCCCC-CCCHHHHCCCCCEEEEEECCHHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHH-HHHCCCCE
T ss_conf 467872577637756-6434340258834588317727899999818977544445788877887799999-98568734
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCHHHH
Q ss_conf 11276645667673069962698243442488788887
Q gi|254780760|r 165 LIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202 (330)
Q Consensus 165 ~ildgg~~~~GieSTiid~~~~~~~~IlR~G~i~~~~i 202 (330)
+++|+|.+. |.+|||||+++ +.++|+|+|+++.+..
T Consensus 170 ~ild~g~~~-~~pSTIvdl~~-~~~~ilR~G~~~~~~~ 205 (206)
T 1k7j_A 170 LIIHGGYLG-QKPTTVIDLTD-DTPVVVREGVGDVKPF 205 (206)
T ss_dssp EEEECCCCC-SCCCEEEECGG-GCCEEEECCSSCSGGG
T ss_pred EEEECCCCC-CCCCEEEEEEC-CCEEEECCCCCCCHHH
T ss_conf 999489738-98998999879-9649984579851643