HHsearch results for GI: 254780760 and protein with PDBid: 1k7j_A

>1k7j_A Protein YCIO, protein TF1; structural genomics, X-RAY crystallography, putative translation factor, PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: d.115.1.1 PDB: 1kk9_A
Probab=100.00  E-value=0  Score=365.91  Aligned_cols=192  Identities=23%  Similarity=0.344  Sum_probs=173.2

Q ss_pred             CCHHHHHHHHHHHHCCCEEEEECCCHHEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHCCCHHHHHHHH
Q ss_conf             99999999999997598599907780004027999999999999708881065499967989977642005204689985
Q gi|254780760|r    7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKL   86 (330)
Q Consensus         7 ~d~~~i~~a~~~L~~G~~v~~PTeTvYGlg~~a~~~~av~~I~~~K~Rp~~~Pli~~v~~~~~~~~~~~~~~~~~~l~~~   86 (330)
                      .+++.|++|+++|++|++|+|||||||||||||+|++||+|||++|+||.+|||+++++++++++.|+.+++.+++|+++
T Consensus        12 p~~~~i~~a~~~L~~G~vv~~PTdtvYgl~cda~n~~Av~ri~~iK~R~~~kpl~ll~~~~~~~~~~~~~~~~~~~l~~~   91 (206)
T 1k7j_A           12 PQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELSTYSFVDNVAFRLMKN   91 (206)
T ss_dssp             CCHHHHHHHHHHHHTTCCEEEEETTEEEEEEETTCHHHHHHHHHHHTCCTTCCCEEECSSHHHHHHHBCCCHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHCCCEEEEECCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHC
T ss_conf             89899999999997699899977956488884788899999999607998888048613088899987655899987410


Q ss_pred             CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHCCCEEECCCCCCCCCC-CCCHHHHHHHHHHCCCCC
Q ss_conf             058871886146787811655544457633224156-676664201421212343334854-330177776644065542
Q gi|254780760|r   87 FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIP  164 (330)
Q Consensus        87 fwPGplT~il~~~~~~~i~~~~t~~~~tvavRiP~h-~~~~ll~~~~~Piaa~SAN~sG~~-Spt~a~~v~~~~~~~~i~  164 (330)
                      |||||+|+|++.++. ..+..++++.++||+|+|+| ++++|++.+|.||++||||+||.+ +.+..+++. +.|++.+|
T Consensus        92 ~wPgplT~i~~~~~~-~~~~~~~~~~~tv~vRip~~~~~~~L~~~~~~Pl~~TSAN~sG~~~~~~~~~~i~-~~~~~~vd  169 (206)
T 1k7j_A           92 NTPGNYTFILKGTKE-VPRRLLQEKRKTIGMRVPSNPIAQALLEALGEPMLSTSLMLPGSEFTESDPEEIK-DRLEKQVD  169 (206)
T ss_dssp             SCSSSEEEEEEBCTT-SCGGGSCTTTCEEEEECCCSHHHHHHHHHHCSCEEEEECBCTTCSSBCCCHHHHH-HHHTTTCS
T ss_pred             CCCCCEEEEECCCCC-CCCHHHHCCCCCEEEEEECCHHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHH-HHHCCCCE
T ss_conf             467872577637756-6434340258834588317727899999818977544445788877887799999-98568734


Q ss_pred             CCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCHHHH
Q ss_conf             11276645667673069962698243442488788887
Q gi|254780760|r  165 LIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL  202 (330)
Q Consensus       165 ~ildgg~~~~GieSTiid~~~~~~~~IlR~G~i~~~~i  202 (330)
                      +++|+|.+. |.+|||||+++ +.++|+|+|+++.+..
T Consensus       170 ~ild~g~~~-~~pSTIvdl~~-~~~~ilR~G~~~~~~~  205 (206)
T 1k7j_A          170 LIIHGGYLG-QKPTTVIDLTD-DTPVVVREGVGDVKPF  205 (206)
T ss_dssp             EEEECCCCC-SCCCEEEECGG-GCCEEEECCSSCSGGG
T ss_pred             EEEECCCCC-CCCCEEEEEEC-CCEEEECCCCCCCHHH
T ss_conf             999489738-98998999879-9649984579851643