Query gi|254780760|ref|YP_003065173.1| hypothetical protein CLIBASIA_03235 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 330
No_of_seqs 200 out of 2688
Neff 6.3
Searched_HMMs 23785
Date Mon May 30 13:46:10 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780760.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2eqa_A Hypothetical protein ST 100.0 0 0 649.1 28.1 315 2-322 3-338 (352)
2 3l7v_A Putative uncharacterize 100.0 0 0 392.7 6.4 198 8-209 42-283 (295)
3 1jcu_A Conserved protein MTH16 100.0 0 0 376.1 10.2 196 1-203 1-201 (208)
4 1k7j_A Protein YCIO, protein T 100.0 0 0 365.9 16.3 192 7-202 12-205 (206)
5 1hru_A YRDC gene product; prot 100.0 0 0 340.9 14.5 179 8-193 6-188 (188)
6 2yv4_A Hypothetical protein PH 99.6 2.6E-16 1.1E-20 124.7 4.4 54 269-322 48-101 (105)
7 1m3u_A 3-methyl-2-oxobutanoate 62.5 6.6 0.00028 18.4 3.6 39 276-315 157-195 (264)
8 3ez4_A 3-methyl-2-oxobutanoate 53.0 8.1 0.00034 17.8 2.8 42 273-315 160-201 (269)
9 1o66_A 3-methyl-2-oxobutanoate 49.6 12 0.00051 16.6 3.2 35 280-315 161-195 (275)
10 1yt3_A Ribonuclease D, RNAse D 47.5 11 0.00048 16.8 2.8 32 1-32 1-32 (375)
11 1ucs_A Antifreeze peptide RD1; 44.9 13 0.00055 16.4 2.8 49 179-229 15-63 (64)
12 1k4i_A 3,4-dihydroxy-2-butanon 37.0 19 0.00082 15.3 2.7 60 10-74 13-78 (233)
13 1bhe_A PEHA, polygalacturonase 35.8 13 0.00053 16.5 1.6 31 6-36 23-55 (376)
14 1oy0_A Ketopantoate hydroxymet 35.6 20 0.00086 15.2 3.7 38 276-315 176-213 (281)
15 3d7l_A LIN1944 protein; APC893 27.8 27 0.0012 14.4 5.7 54 1-54 4-58 (202)
16 1msi_A Type III antifreeze pro 27.2 20 0.00086 15.2 1.4 52 179-233 16-67 (70)
17 1g57_A DHBP synthase, 3,4-dihy 26.7 29 0.0012 14.2 5.4 61 9-74 13-79 (217)
18 3cym_A Uncharacterized protein 25.0 31 0.0013 14.0 2.5 27 6-32 21-48 (440)
19 1yle_A Arginine N-succinyltran 20.7 16 0.00066 15.9 -0.2 13 159-172 249-261 (342)
No 1
>2eqa_A Hypothetical protein ST1526; YRDC/RIBB fold, YRDC domain, SUA5 domain, structural genomics, NPPSFA; HET: AMP; 1.80A {Sulfolobus tokodaii}
Probab=100.00 E-value=0 Score=649.10 Aligned_cols=315 Identities=32% Similarity=0.486 Sum_probs=276.9
Q ss_pred EEECC----CCHHHHHHHHHHHHCCCEEEEECCCHHEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHH-C
Q ss_conf 44317----999999999999975985999077800040279999999999997088810654999679899776420-0
Q gi|254780760|r 2 QIMSI----TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-V 76 (330)
Q Consensus 2 ~~~~~----~d~~~i~~a~~~L~~G~~v~~PTeTvYGlg~~a~~~~av~~I~~~K~Rp~~~Pli~~v~~~~~~~~~~~-~ 76 (330)
+|+++ .|.+.|++|+++|++|++|+|||||||||||||+|++||+|||++|+||.+||||+||+|++++.+|+. +
T Consensus 3 ~i~~i~~~~p~~~~i~~Aa~~L~~G~vV~~PTeTvYGLga~a~n~~Av~kI~~~K~Rp~~kPliv~v~~~~~~~~~~~~~ 82 (352)
T 2eqa_A 3 QIIKIDPLNPEIDKIKIAADVIRNGGTVAFPTETVYGLGANAFDGNACLKIFQAKNRPVDNPLIVHIADFNQLFEVAKDI 82 (352)
T ss_dssp EEEECCSSSCCHHHHHHHHHHHHTTCCEEECCSSSCEEEEETTCHHHHHHHHHHHTCCTTSCCEEECSSHHHHHHHEESC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCEEEECCCCHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHC
T ss_conf 07983899989899999999996799899987860057875999999999999719997898799987999999874006
Q ss_pred CCHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHH
Q ss_conf 5204689985058871886146787811655544457633224156-676664201421212343334854330177776
Q gi|254780760|r 77 DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHIL 155 (330)
Q Consensus 77 ~~~~~~l~~~fwPGplT~il~~~~~~~i~~~~t~~~~tvavRiP~h-~~~~ll~~~~~Piaa~SAN~sG~~Spt~a~~v~ 155 (330)
++.+++|+++|||||||+|++.+ ..+++.+++|++|||||||+| ++++|++.+|.||++||||+||++|||+++||+
T Consensus 83 ~~~~~~l~~~fwPGplTlil~~~--~~~~~~~~~~~~tVgvRiP~h~~~~~Ll~~~g~PlaatSAN~sG~~s~t~~~~v~ 160 (352)
T 2eqa_A 83 PDKVLEIAQIVWPGPLTFVLKKT--ERVPKEVTAGLDTVAVRMPAHPIALQLIRESGVPIAAPSANLATRPSPTKAEDVI 160 (352)
T ss_dssp CHHHHHHHHHHCSSSEEEEEEEC--TTSCHHHHTTCSEEEEECCCCHHHHHHHHHHTSCEEECBSSCTTSCCCCSHHHHH
T ss_pred HHHHHHHHHHCCCCCCEEEECCC--CCCCCEECCCCCEEEEECCCCHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHH
T ss_conf 79999998750478510342057--6665200289963999924968999998515985651344666544540157999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCHHHHHHHCCCEECC----CCCCCCCCCCCCCCCCCCC
Q ss_conf 644065542112766456676730699626982434424887888877422730013----3334433223333210012
Q gi|254780760|r 156 SSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEY----CVDETSTPQSPGMLKSHYA 231 (330)
Q Consensus 156 ~~~~~~~i~~ildgg~~~~GieSTiid~~~~~~~~IlR~G~i~~~~i~~~l~~~v~~----~~~~~~~~~SPG~~~~HYA 231 (330)
++|++++++|+|||.|..|+||||||++++ +++|||+|+|+.++|+++++..+.. ...+.+.++||||+|+|||
T Consensus 161 -~~~~~~vd~Ildgg~~~~g~eSTIVd~~~~-~~~IlR~G~is~e~I~~~l~~~~~~~~~~~~~~~~~~~sPG~~~~HYs 238 (352)
T 2eqa_A 161 -VDLNGRVDVIIDGGHTFFGVESTIINVTVE-PPVLLRPGPFTIEELKKLFGEIVIPEFAQGKKEAEIALAPGMKYKHYA 238 (352)
T ss_dssp -HHHTTTSSEEEECCCCSSCSCCEEEECSCC-C-EEEECCSSCHHHHHHHCTTCBC-------------------CCCCS
T ss_pred -HHHCCCCCEEEECCCCCCCCCCCEEEECCC-CCEEEECCCCCHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf -985898759996687788999825882389-856995688999999987487153131112333355668532332558
Q ss_pred CCCCHHHHCCCCC-----------CCCCEEEECCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 4531011101357-----------77000002022235656651799759999999999989999999997799899996
Q gi|254780760|r 232 PRSQVRLRAIHVN-----------PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300 (330)
Q Consensus 232 P~~~V~L~~~~~~-----------~~e~ll~~~~~~~~~~~~~~~~~~Ls~~gd~~eaA~nLY~~LR~lD~~~~~~I~ve 300 (330)
|+++++|+..... .+..++.+.... ........+.||..+|++|||+|||+.||++|+.+++.|+++
T Consensus 239 P~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~ls~~~d~~e~a~~Ly~~Lr~lD~~~~~~I~v~ 316 (352)
T 2eqa_A 239 PNTRLLLVENRNIFKDVVSLLSKKYKVALLIPKELS--KEFEGLQQIILGSDENLYEVARNLFDSFRELDKLNVDLGIMI 316 (352)
T ss_dssp CSSEEEEECCGGGHHHHHHHHTTTSCEEEEEEGGGT--GGGTTSEEEEEECTTCHHHHHHHHHHHHHHHHHSCCSEEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHCCCCEEEEEECHHHC--CCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 872499943752058999985668707998410000--024775289968999999999999999999866799989998
Q ss_pred CCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 3888761089998999840583
Q gi|254780760|r 301 SIPNHGLGIAINNRLERAAAPR 322 (330)
Q Consensus 301 ~ip~~glg~AI~DRL~RAA~~r 322 (330)
.+|++|+|.||||||+|||+++
T Consensus 317 ~~p~~glg~Ai~dRL~rAA~~~ 338 (352)
T 2eqa_A 317 GFPERGIGFAIMNRARKASGFS 338 (352)
T ss_dssp CCCCSTTHHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHCCCC
T ss_conf 2899880899999999875999
No 2
>3l7v_A Putative uncharacterized protein SMU.1377C; transcription; 2.26A {Streptococcus mutans}
Probab=100.00 E-value=0 Score=392.67 Aligned_cols=198 Identities=20% Similarity=0.252 Sum_probs=175.6
Q ss_pred CHHHHHHHHHHHH-CCCEEEEECCCHHEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHCCCHHHHHHHH
Q ss_conf 9999999999997-598599907780004027999999999999708881065499967989977642005204689985
Q gi|254780760|r 8 DSNALRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKL 86 (330)
Q Consensus 8 d~~~i~~a~~~L~-~G~~v~~PTeTvYGlg~~a~~~~av~~I~~~K~Rp~~~Pli~~v~~~~~~~~~~~~~~~~~~l~~~ 86 (330)
+.+.+++|++.|+ +|++|+|||||||||||+ |++||+|||++|+||.+|||++|++|++++..|+++++.+++|+++
T Consensus 42 ~~~~~~~A~~~l~~~Ggvv~~PTDTvYGlga~--~~~AV~rI~~iK~Rp~~KPlivlv~s~~~l~~~~~~~~~~~~l~~~ 119 (295)
T 3l7v_A 42 DGNLSQEGFEIVKGEGGVIVCPTKVGYIIMTS--DKKGLERKFEAKKRNRNKPGVVLCGSMEELRALAQLTPEIDAFYQK 119 (295)
T ss_dssp CSSCCHHHHHHHHSTTCEEEEEETTEEEEEES--SHHHHHHHHHHHTCCTTSCCEEECSSHHHHHHHBCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCEEEEECCCEEEEEEC--CHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHCCCCHHHHHHHHH
T ss_conf 97489999999984998899967870376518--9999999999818998899799989999999774899999999998
Q ss_pred CCCCCEEEEE--CCCC-------------CCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHCCCEEECCCCCCCCCCCCCH
Q ss_conf 0588718861--4678-------------7811655544457633224156-6766642014212123433348543301
Q gi|254780760|r 87 FWPGPLTLVL--DLLS-------------TTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITN 150 (330)
Q Consensus 87 fwPGplT~il--~~~~-------------~~~i~~~~t~~~~tvavRiP~h-~~~~ll~~~~~Piaa~SAN~sG~~Spt~ 150 (330)
|||||||+++ |.++ ...+++..+.+..+||+|+|+| ++++|++.+|.||++||||+||+++|++
T Consensus 120 fwPGplTli~i~p~k~~~~~~~~~~~~~~~~~~~~~~~t~~~tVgiRiP~~~ia~~Ll~~~g~PL~aTSAN~SG~~s~t~ 199 (295)
T 3l7v_A 120 HWDEDILLGCILPWKAEAYEKLKAYGDGREELMTDIRGTSCFVIKFGVAGEQIAKEMWEKEGRMVYASSANPSGKGNRGK 199 (295)
T ss_dssp HHHHTCCEEEEEEBCHHHHHHHHHTCSCTHHHHSCTTSEEEEEESSCHHHHHHHHHHHHHHCCCCEEEECC-----CTTC
T ss_pred HCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCEEEECCCCCCCCCCCCC
T ss_conf 58998774677315677653222356653101335557777669985789899999999729969988877679989999
Q ss_pred HHHHHHHHHCCCCCCCCCCCC--------------CCCCCCCEEEEEECCC-------------CEEEEECCCCCHHHHH
Q ss_conf 777766440655421127664--------------5667673069962698-------------2434424887888877
Q gi|254780760|r 151 VKHILSSSICKEIPLIIDGGI--------------SKIGLESTIVNVQCEK-------------KVRILRPGGLEIETLK 203 (330)
Q Consensus 151 a~~v~~~~~~~~i~~ildgg~--------------~~~GieSTiid~~~~~-------------~~~IlR~G~i~~~~i~ 203 (330)
++|+. ++|++.+|+|||||+ |+.|+||||||+++.. .++|||+| +..++|.
T Consensus 200 ~eeI~-~~l~~~VDlIlDgG~~~~~i~~~~~~~~~~~~gv~STviD~t~~~~~~~~~~~~~~~~~P~ilR~G-i~~~~I~ 277 (295)
T 3l7v_A 200 VEGIG-ERIESMVDLVIEADDYVASIQPDKTIETRYEQGVMVSMVDKDGKLIPQQGADSRSVEPCPVVIRKG-LDIDKIM 277 (295)
T ss_dssp GGGSC-HHHHHHSSEEEECHHHHHHTCTTCCTTTSCCSCCEEECBCTTSCBCCCCCTTCCSCSSCCEEEECC-TTHHHHH
T ss_pred HHHHH-HHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCC-CCHHHHH
T ss_conf 99999-987267869997985223455554333325777402599788874543333334568998698088-9999999
Q ss_pred HHCCCE
Q ss_conf 422730
Q gi|254780760|r 204 RAISVE 209 (330)
Q Consensus 204 ~~l~~~ 209 (330)
+++...
T Consensus 278 ~il~~~ 283 (295)
T 3l7v_A 278 MHLSDQ 283 (295)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 998735
No 3
>1jcu_A Conserved protein MTH1692; mixed alpha-beta structure, structural genomics; NMR {Methanothermobacterthermautotrophicus} SCOP: d.115.1.1
Probab=100.00 E-value=0 Score=376.10 Aligned_cols=196 Identities=26% Similarity=0.426 Sum_probs=178.4
Q ss_pred CEEECCCC----HHHHHHHHHHHHCCCEEEEECCCHHEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHC
Q ss_conf 94431799----99999999999759859990778000402799999999999970888106549996798997764200
Q gi|254780760|r 1 MQIMSITD----SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 (330)
Q Consensus 1 m~~~~~~d----~~~i~~a~~~L~~G~~v~~PTeTvYGlg~~a~~~~av~~I~~~K~Rp~~~Pli~~v~~~~~~~~~~~~ 76 (330)
|.|++++. ++.|++|+++|++|++|+|||||||||||||+|++||+|||++|+|+.++|+++++++++++.+|+.+
T Consensus 1 m~i~~i~~~np~~~~i~~a~~~L~~G~vi~~PTdtvYgl~~~a~n~~Av~ki~~lK~R~~~kp~~~l~~~~~~~~~~~~~ 80 (208)
T 1jcu_A 1 MLIRKITRKNPSPDVLEEAISVMEGGGIVIYPTDTIYGLGVNALDEDAVRRLFRVKGRSPHKPVSICVSCVDEIPRFSRP 80 (208)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHTTCEEECCCSSSCEEEEETTSHHHHHHHHHHCCSCTTSCCEEECSCTTTSTTTEEC
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHH
T ss_conf 97999088996999999999999779989998697303787389989999999863122458648883425666889888
Q ss_pred CCHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHH
Q ss_conf 5204689985058871886146787811655544457633224156-676664201421212343334854330177776
Q gi|254780760|r 77 DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHIL 155 (330)
Q Consensus 77 ~~~~~~l~~~fwPGplT~il~~~~~~~i~~~~t~~~~tvavRiP~h-~~~~ll~~~~~Piaa~SAN~sG~~Spt~a~~v~ 155 (330)
++..++++++|||||+|+|++.+ ..++++++++.++||+|+|+| ++++|++.+ ||++||||+||++++++.+++.
T Consensus 81 ~~~~~~l~~~~~PgplT~i~~~~--~~~~~~~~~~~~tigvRip~~~~~~~L~~~~--Pl~~TSAN~sG~~~~~~~~ei~ 156 (208)
T 1jcu_A 81 SGDAMELMERILPGPYTVVLERN--ELIPDVITGGSSRVGIRVPDDEICRRIAARF--PVTATSANISGKPPSPRLEEIV 156 (208)
T ss_dssp CHHHHHHHHHSCSSSEEEEEEEC--SCCCHHHHTTTTEEEEECCSCHHHHHHHHHS--CEEEEECCSSSCCSCSCHHHHH
T ss_pred HHHHHHHHHHCCCCCCEEECCCC--CCCCHHHCCCCCCEEEECCCHHHHHHHHHCC--CCCCCCCCCCCCCCCCCHHHHH
T ss_conf 78999986312579832400234--5678645599751006546759999998418--9220235758999988889999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCHHHHH
Q ss_conf 644065542112766456676730699626982434424887888877
Q gi|254780760|r 156 SSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203 (330)
Q Consensus 156 ~~~~~~~i~~ildgg~~~~GieSTiid~~~~~~~~IlR~G~i~~~~i~ 203 (330)
++|+ .+|+|+|+|.|..|.+|||||+++ ++++|+|+|+++.++|.
T Consensus 157 -~~~~-~vd~ild~g~~~~~~~STIvd~~~-~~~~IlR~G~i~~~~il 201 (208)
T 1jcu_A 157 -RDLD-AVDLVLDAGDCLDMEPSTVIDLTV-NPPRVLRRGKGPLDPVL 201 (208)
T ss_dssp -HHSS-SSEECCSSCCCSCSCCCEEECCCS-SSCCEEECCCSSCCCCC
T ss_pred -HHHC-CCCEEEECCCCCCCCCCEEEEEEC-CCEEEEEECCCCHHHHH
T ss_conf -9855-866899798678999988899459-94599982699666987
No 4
>1k7j_A Protein YCIO, protein TF1; structural genomics, X-RAY crystallography, putative translation factor, PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: d.115.1.1 PDB: 1kk9_A
Probab=100.00 E-value=0 Score=365.91 Aligned_cols=192 Identities=23% Similarity=0.344 Sum_probs=173.2
Q ss_pred CCHHHHHHHHHHHHCCCEEEEECCCHHEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHCCCHHHHHHHH
Q ss_conf 99999999999997598599907780004027999999999999708881065499967989977642005204689985
Q gi|254780760|r 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKL 86 (330)
Q Consensus 7 ~d~~~i~~a~~~L~~G~~v~~PTeTvYGlg~~a~~~~av~~I~~~K~Rp~~~Pli~~v~~~~~~~~~~~~~~~~~~l~~~ 86 (330)
.+++.|++|+++|++|++|+|||||||||||||+|++||+|||++|+||.+|||+++++++++++.|+.+++.+++|+++
T Consensus 12 p~~~~i~~a~~~L~~G~vv~~PTdtvYgl~cda~n~~Av~ri~~iK~R~~~kpl~ll~~~~~~~~~~~~~~~~~~~l~~~ 91 (206)
T 1k7j_A 12 PQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELSTYSFVDNVAFRLMKN 91 (206)
T ss_dssp CCHHHHHHHHHHHHTTCCEEEEETTEEEEEEETTCHHHHHHHHHHHTCCTTCCCEEECSSHHHHHHHBCCCHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHCCCEEEEECCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHC
T ss_conf 89899999999997699899977956488884788899999999607998888048613088899987655899987410
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHCCCEEECCCCCCCCCC-CCCHHHHHHHHHHCCCCC
Q ss_conf 058871886146787811655544457633224156-676664201421212343334854-330177776644065542
Q gi|254780760|r 87 FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIP 164 (330)
Q Consensus 87 fwPGplT~il~~~~~~~i~~~~t~~~~tvavRiP~h-~~~~ll~~~~~Piaa~SAN~sG~~-Spt~a~~v~~~~~~~~i~ 164 (330)
|||||+|+|++.++. ..+..++++.++||+|+|+| ++++|++.+|.||++||||+||.+ +.+..+++. +.|++.+|
T Consensus 92 ~wPgplT~i~~~~~~-~~~~~~~~~~~tv~vRip~~~~~~~L~~~~~~Pl~~TSAN~sG~~~~~~~~~~i~-~~~~~~vd 169 (206)
T 1k7j_A 92 NTPGNYTFILKGTKE-VPRRLLQEKRKTIGMRVPSNPIAQALLEALGEPMLSTSLMLPGSEFTESDPEEIK-DRLEKQVD 169 (206)
T ss_dssp SCSSSEEEEEEBCTT-SCGGGSCTTTCEEEEECCCSHHHHHHHHHHCSCEEEEECBCTTCSSBCCCHHHHH-HHHTTTCS
T ss_pred CCCCCEEEEECCCCC-CCCHHHHCCCCCEEEEEECCHHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHH-HHHCCCCE
T ss_conf 467872577637756-6434340258834588317727899999818977544445788877887799999-98568734
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCHHHH
Q ss_conf 11276645667673069962698243442488788887
Q gi|254780760|r 165 LIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202 (330)
Q Consensus 165 ~ildgg~~~~GieSTiid~~~~~~~~IlR~G~i~~~~i 202 (330)
+++|+|.+. |.+|||||+++ +.++|+|+|+++.+..
T Consensus 170 ~ild~g~~~-~~pSTIvdl~~-~~~~ilR~G~~~~~~~ 205 (206)
T 1k7j_A 170 LIIHGGYLG-QKPTTVIDLTD-DTPVVVREGVGDVKPF 205 (206)
T ss_dssp EEEECCCCC-SCCCEEEECGG-GCCEEEECCSSCSGGG
T ss_pred EEEECCCCC-CCCCEEEEEEC-CCEEEECCCCCCCHHH
T ss_conf 999489738-98998999879-9649984579851643
No 5
>1hru_A YRDC gene product; protein folding, structural genomics, RNA, SUA5, PSI, protein structure initiative, midwest center for structural genomics; 2.00A {Escherichia coli} SCOP: d.115.1.1
Probab=100.00 E-value=0 Score=340.89 Aligned_cols=179 Identities=26% Similarity=0.357 Sum_probs=161.0
Q ss_pred CHHHHHHHHHHHHCCCEEEEECCCHHEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHH---CCCHHHHHH
Q ss_conf 99999999999975985999077800040279999999999997088810654999679899776420---052046899
Q gi|254780760|r 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS---VDPLSLHLA 84 (330)
Q Consensus 8 d~~~i~~a~~~L~~G~~v~~PTeTvYGlg~~a~~~~av~~I~~~K~Rp~~~Pli~~v~~~~~~~~~~~---~~~~~~~l~ 84 (330)
+.+.|++|+++|++|++|+|||||||||||||+|++||+|||++|+||.+|||++++++++++.+|++ ....+.+++
T Consensus 6 ~~~~i~~a~~~L~~G~iv~~PTdt~Ygl~~~a~n~~av~ri~~lK~R~~~kp~~vl~~~~~~~~~~~~~~~~~~~~~~~~ 85 (188)
T 1hru_A 6 QRDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQLKPYIDDTMLTDVQRETI 85 (188)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECSSSEEEEECTTCHHHHHHHHHHHTCCGGGCCEEEESSHHHHGGGCCCTTCCHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCEEEEECCCHHEEEEECCCHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 88999999999977998999879603378808998999999998389966783488645777766621123429999999
Q ss_pred HHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 85058871886146787811655544457633224156-67666420142121234333485433017777664406554
Q gi|254780760|r 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEI 163 (330)
Q Consensus 85 ~~fwPGplT~il~~~~~~~i~~~~t~~~~tvavRiP~h-~~~~ll~~~~~Piaa~SAN~sG~~Spt~a~~v~~~~~~~~i 163 (330)
++|||||+|+|+|.+ ..++..++++.+|||||+|+| ++++|++++|.||++||||+||++++++.+++. ++|++.+
T Consensus 86 ~~~~PgplT~il~~~--~~~~~~~~~~~~ti~vRip~~~~~~~l~~~~g~Pl~~TSAN~sG~~~~~~~~~i~-~~~~~~v 162 (188)
T 1hru_A 86 FSRWPGPVTFVFPAP--ATTPRWLTGRFDSLAVRVTDHPLVVALCQAYGKPLVSTSANLSGLPPCRTVDEVR-AQFGAAF 162 (188)
T ss_dssp HTTCSSSEEEEEECC--TTSCHHHHTTSSEEEEEECCCHHHHHHHHHHTSCEEEEESCCTTSCCCCSHHHHH-HHHCTTS
T ss_pred HHCCCCCCCEECCCC--CCCCHHHCCCCEEEEEECCCHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHH-HHHCCCC
T ss_conf 708998842003654--5564010354404654148719999999984995685422568899989999999-9837887
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCCCEEEEE
Q ss_conf 211276645667673069962698243442
Q gi|254780760|r 164 PLIIDGGISKIGLESTIVNVQCEKKVRILR 193 (330)
Q Consensus 164 ~~ildgg~~~~GieSTiid~~~~~~~~IlR 193 (330)
++++|++.+ .+.+|||||+++ + +|+|
T Consensus 163 d~i~~~~~~-~~~pSTIid~~~-~--~iiR 188 (188)
T 1hru_A 163 PVVPGETGG-RLNPSEIRDALT-G--ELFR 188 (188)
T ss_dssp CBCCCCCCS-SCCCCEEEETTT-S--SBCC
T ss_pred EEEECCCCC-CCCCCEEEECCC-C--EEEC
T ss_conf 799789877-789867998979-9--8739
No 6
>2yv4_A Hypothetical protein PH0435; alpha and beta proteins (A+B), SUA5 domain, structural genomics, NPPSFA; 2.00A {Pyrococcus horikoshii OT3}
Probab=99.61 E-value=2.6e-16 Score=124.68 Aligned_cols=54 Identities=28% Similarity=0.492 Sum_probs=50.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 599999999999899999999977998999963888761089998999840583
Q gi|254780760|r 269 LSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 (330)
Q Consensus 269 Ls~~gd~~eaA~nLY~~LR~lD~~~~~~I~ve~ip~~glg~AI~DRL~RAA~~r 322 (330)
++..+|++++|+|||+.||++|+.+++.|++|.+|++|+|.||||||+|||++|
T Consensus 48 ~~lg~~~~~~A~~Ly~~LR~~D~~~vd~I~~e~~~~~g~g~AImnRL~KAA~~~ 101 (105)
T 2yv4_A 48 FFLGSSVEEVAKNLFKALRYMDKAGVDVVIAEGVEERGLGLAVMNRLRKASGYK 101 (105)
T ss_dssp EECCSSHHHHHHHHHHHHHHHHHTTCSEEEEEEESGGGHHHHHHHHC---CCCE
T ss_pred EECCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCC
T ss_conf 977989999999999999998257999899981899781899999999865689
No 7
>1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionine MAD, decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8
Probab=62.49 E-value=6.6 Score=18.35 Aligned_cols=39 Identities=23% Similarity=0.324 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 9999989999999997799899996388876108999899
Q gi|254780760|r 276 KEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRL 315 (330)
Q Consensus 276 ~eaA~nLY~~LR~lD~~~~~~I~ve~ip~~glg~AI~DRL 315 (330)
.+-|..|+..-+.+++.|+..|++|.+|++ +...|.+++
T Consensus 157 ~~ea~~l~~dA~~le~AGaf~ivlE~Vp~~-la~~It~~l 195 (264)
T 1m3u_A 157 DEAGDQLLSDALALEAAGAQLLVLECVPVE-LAKRITEAL 195 (264)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEESCCHH-HHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHEEEEECCCHH-HHHHHHCCC
T ss_conf 799999999999999733046775317588-999986267
No 8
>3ez4_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; cytoplasm, magnesium, metal-binding, pantothenate biosynthesis; 2.10A {Burkholderia pseudomallei}
Probab=53.00 E-value=8.1 Score=17.79 Aligned_cols=42 Identities=21% Similarity=0.445 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 9999999989999999997799899996388876108999899
Q gi|254780760|r 273 GKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRL 315 (330)
Q Consensus 273 gd~~eaA~nLY~~LR~lD~~~~~~I~ve~ip~~glg~AI~DRL 315 (330)
|.-.+-|..|+..-+.+++.|+-.|++|.+|++ +...|.+++
T Consensus 160 Gkt~~ea~~ll~dA~~le~AGaf~ivlE~Vp~~-la~~It~~l 201 (269)
T 3ez4_A 160 GKTEAGAAQLLRDARAVEEAGAQLIVLEAVPTL-VAAEVTREL 201 (269)
T ss_dssp -----CHHHHHHHHHHHHHHTCSEEEEESCCHH-HHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHH-HHHHHHHCC
T ss_conf 789999999999999998602227764267577-899998408
No 9
>1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A*
Probab=49.59 E-value=12 Score=16.63 Aligned_cols=35 Identities=23% Similarity=0.358 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 989999999997799899996388876108999899
Q gi|254780760|r 280 FNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRL 315 (330)
Q Consensus 280 ~nLY~~LR~lD~~~~~~I~ve~ip~~glg~AI~DRL 315 (330)
..||...+.+++.|+..|++|.+|++ +...|.+++
T Consensus 161 ~~l~~~ak~lE~AGa~aivlE~Vp~e-va~~It~~l 195 (275)
T 1o66_A 161 QALLNDAKAHDDAGAAVVLMECVLAE-LAKKVTETV 195 (275)
T ss_dssp HHHHHHHHHHHHTTCSEEEEESCCHH-HHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCHH-HHHHHHHHC
T ss_conf 89999999999667626641036477-899998535
No 10
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=47.55 E-value=11 Score=16.82 Aligned_cols=32 Identities=41% Similarity=0.429 Sum_probs=28.7
Q ss_pred CEEECCCCHHHHHHHHHHHHCCCEEEEECCCH
Q ss_conf 94431799999999999997598599907780
Q gi|254780760|r 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETV 32 (330)
Q Consensus 1 m~~~~~~d~~~i~~a~~~L~~G~~v~~PTeTv 32 (330)
|.+.-+++++.++.+++.|++.++|++=|||+
T Consensus 1 m~y~~I~t~~~L~~~~~~l~~~~~ia~DtE~~ 32 (375)
T 1yt3_A 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFV 32 (375)
T ss_dssp CCCEEECSHHHHHHHHHHHTTSSEEEEEEEEE
T ss_pred CCEEEECCHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 92799898999999999984799089979848
No 11
>1ucs_A Antifreeze peptide RD1; small beta barrel, pretzel fold, antifreeze protein; 0.62A {Lycodichthys dearborni} SCOP: b.85.1.1 PDB: 9ame_A 1ame_A 1kde_A 1kdf_A 1gzi_A 1hg7_A 1b7i_A 2spg_A 1jab_A 1b7j_A 2msj_A 1ekl_A 4ame_A 7ame_A 2ame_A 1msj_A 1b7k_A 6ame_A 9msi_A 2jia_A ...
Probab=44.89 E-value=13 Score=16.44 Aligned_cols=49 Identities=20% Similarity=0.346 Sum_probs=33.2
Q ss_pred EEEEEECCCCEEEEECCCCCHHHHHHHCCCEECCCCCCCCCCCCCCCCCCC
Q ss_conf 069962698243442488788887742273001333344332233332100
Q gi|254780760|r 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSH 229 (330)
Q Consensus 179 Tiid~~~~~~~~IlR~G~i~~~~i~~~l~~~v~~~~~~~~~~~SPG~~~~H 229 (330)
|++-.. .-.+++-||.+|+.+++-+++|.++.....+. .+.-|-|...|
T Consensus 15 t~lT~~-mlt~KV~~P~GIp~e~i~~iVGk~v~~~V~~D-~~l~~~mvk~y 63 (64)
T 1ucs_A 15 TALTLI-MMKAEVVTPMGIPAEEIPKLVGMQVNRAVPLG-TTLMPDMVKNY 63 (64)
T ss_dssp CBCCGG-GEEEECCSSCCSBGGGHHHHTTCBBSSCBCTT-CBCCGGGBTTC
T ss_pred CCCCHH-HHCEECCCCCCCCHHHHHHHHHHHHHCCCCCC-CCCCHHHHHHC
T ss_conf 754698-84020469899898999998718984043689-72168887315
No 12
>1k4i_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, antimicrobial target, structure-based design, isomerase; 0.98A {Magnaporthe grisea} SCOP: d.115.1.2 PDB: 1k49_A 1k4l_A 1k4o_A 1k4p_A
Probab=36.98 E-value=19 Score=15.33 Aligned_cols=60 Identities=12% Similarity=0.117 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHCCCEEEEECC------CHHEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHH
Q ss_conf 999999999975985999077------80004027999999999999708881065499967989977642
Q gi|254780760|r 10 NALRKACEFLDAGLPIAIPTE------TVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 (330)
Q Consensus 10 ~~i~~a~~~L~~G~~v~~PTe------TvYGlg~~a~~~~av~~I~~~K~Rp~~~Pli~~v~~~~~~~~~~ 74 (330)
+.|++|.+.|++|+.|++=-| +-.-+.|...+++.+.-+.+- ...|||..-+.+.++++.
T Consensus 13 ~~Ie~ai~al~~G~~Viv~Dd~dRE~EgDlv~~Ae~~t~e~i~fm~~~-----~~Glic~a~~~~~~~~L~ 78 (233)
T 1k4i_A 13 DAIPDVIQAFKNGEFVVVLDDPSRENEADLIIAAESVTTEQMAFMVRH-----SSGLICAPLTPERTTALD 78 (233)
T ss_dssp CCHHHHHHHHHTTCCEEEECCTTTTCCEEEEEEGGGCCHHHHHHHHHH-----BCSCCEEEECHHHHHHTT
T ss_pred CCHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHH-----CCCCEEEEECHHHHHCCC
T ss_conf 619999999988996999967998875158978676999999999996-----898689964888871268
No 13
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3
Probab=35.78 E-value=13 Score=16.51 Aligned_cols=31 Identities=19% Similarity=0.291 Sum_probs=23.9
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEECC--CHHEEE
Q ss_conf 7999999999999975985999077--800040
Q gi|254780760|r 6 ITDSNALRKACEFLDAGLPIAIPTE--TVYGLA 36 (330)
Q Consensus 6 ~~d~~~i~~a~~~L~~G~~v~~PTe--TvYGlg 36 (330)
..|+.+|++|.+...+|+.|.+|-- +||=-|
T Consensus 23 t~~T~aIq~AId~~~~Gg~V~ip~G~~~v~lsg 55 (376)
T 1bhe_A 23 STATSTIQKALNNCDQGKAVRLSAGSTSVFLSG 55 (376)
T ss_dssp SBCHHHHHHHHTTCCTTCEEEEECSSSSEEEES
T ss_pred CCHHHHHHHHHHHCCCCCEEEECCCCCCEEEEC
T ss_conf 721999999998675899999948974369981
No 14
>1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8
Probab=35.60 E-value=20 Score=15.19 Aligned_cols=38 Identities=18% Similarity=0.294 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 9999989999999997799899996388876108999899
Q gi|254780760|r 276 KEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRL 315 (330)
Q Consensus 276 ~eaA~nLY~~LR~lD~~~~~~I~ve~ip~~glg~AI~DRL 315 (330)
+++ ..|+.--+.+++.|+..|++|.+|++ +...|.+++
T Consensus 176 ~~a-~~l~~da~~le~AGa~~ivlE~VP~~-lA~~It~~l 213 (281)
T 1oy0_A 176 DAA-EQTIADAIAVAEAGAFAVVMEMVPAE-LATQITGKL 213 (281)
T ss_dssp HHH-HHHHHHHHHHHHHTCSEEEEESCCHH-HHHHHHHHC
T ss_pred HHH-HHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHHHHC
T ss_conf 888-88999999998379808877347367-899998517
No 15
>3d7l_A LIN1944 protein; APC89317, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}
Probab=27.79 E-value=27 Score=14.36 Aligned_cols=54 Identities=24% Similarity=0.306 Sum_probs=34.8
Q ss_pred CEEECCCCHHHH-HHHHHHHHCCCEEEEECCCHHEEECCCCCHHHHHHHHHHHCC
Q ss_conf 944317999999-999999975985999077800040279999999999997088
Q gi|254780760|r 1 MQIMSITDSNAL-RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR 54 (330)
Q Consensus 1 m~~~~~~d~~~i-~~a~~~L~~G~~v~~PTeTvYGlg~~a~~~~av~~I~~~K~R 54 (330)
||++-.--...| ...++.|.+|+-|+.---..-.+.||..++++++++++--||
T Consensus 4 MKvlItGas~GIG~aia~~la~~~~vv~~~r~~~~~~~Dv~~~~~v~~~~~~~g~ 58 (202)
T 3d7l_A 4 MKILLIGASGTLGSAVKERLEKKAEVITAGRHSGDVTVDITNIDSIKKMYEQVGK 58 (202)
T ss_dssp CEEEEETTTSHHHHHHHHHHTTTSEEEEEESSSSSEECCTTCHHHHHHHHHHHCC
T ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCHHHHHHHHHHHCC
T ss_conf 9899989886899999999980994999955613346738899999999998599
No 16
>1msi_A Type III antifreeze protein isoform HPLC 12; multigene family, thermal hysteresis; 1.25A {Macrozoarces americanus} SCOP: b.85.1.1
Probab=27.19 E-value=20 Score=15.18 Aligned_cols=52 Identities=19% Similarity=0.370 Sum_probs=30.2
Q ss_pred EEEEEECCCCEEEEECCCCCHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0699626982434424887888877422730013333443322333321001245
Q gi|254780760|r 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPR 233 (330)
Q Consensus 179 Tiid~~~~~~~~IlR~G~i~~~~i~~~l~~~v~~~~~~~~~~~SPG~~~~HYAP~ 233 (330)
|++... .-.++.-++++|+..++.+++|..+.......+ +..+- +.++||-+
T Consensus 16 ~~lt~~-~l~~Krp~p~GI~P~~~~~IIGKkak~dI~~d~-~I~~d-mik~~~~~ 67 (70)
T 1msi_A 16 TALTLV-MMRSEVVTPVGIPAEDIPRLVSMQVNRAVPLGT-TLMPD-MVKGYAAK 67 (70)
T ss_dssp CBCCGG-GEEEECCSSCCSBGGGHHHHTTCBBSSCBCTTC-BCCGG-GBTTCCC-
T ss_pred CEECHH-HEEEECCCCCCCCHHHHHHHHCHHHHCCCCCCC-CCCHH-HHHHHHHC
T ss_conf 882689-800654788981999999982767616648968-72899-98503200
No 17
>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavine biosynthesis, skeletal rearrangement, antimicrobial target; 1.40A {Escherichia coli} SCOP: d.115.1.2 PDB: 1g58_A 1iez_A 3h07_A
Probab=26.70 E-value=29 Score=14.23 Aligned_cols=61 Identities=10% Similarity=0.052 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHCCCEEEEEC------CCHHEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHH
Q ss_conf 999999999997598599907------780004027999999999999708881065499967989977642
Q gi|254780760|r 9 SNALRKACEFLDAGLPIAIPT------ETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 (330)
Q Consensus 9 ~~~i~~a~~~L~~G~~v~~PT------eTvYGlg~~a~~~~av~~I~~~K~Rp~~~Pli~~v~~~~~~~~~~ 74 (330)
-+.|++|.+.|++|+.|++=- |+-.-+.|..-+++.|.-+.+. ...|||..-+.+.++++.
T Consensus 13 ~~~i~~ai~al~~G~~Viv~Dd~dRE~EgDlv~aAe~iT~e~i~fm~~~-----~~GliC~a~~~~~~~~L~ 79 (217)
T 1g57_A 13 FERVENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRH-----GSGIVCLCITEDRRKQLD 79 (217)
T ss_dssp HHHHHHHHHHHHTTCCEEEEC----CCCEEEEEETTTCCHHHHHHHHHH-----BCSCCEEEECHHHHHHTT
T ss_pred CCHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHH-----CCCCEEECCCHHHHHHCC
T ss_conf 0059999999987997999868998875178978575999999999994-----898889727899995369
No 18
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function, ribonuclease D, exonuclease; 2.10A {Bifidobacterium adolescentis ATCC15703}
Probab=24.96 E-value=31 Score=14.03 Aligned_cols=27 Identities=26% Similarity=0.313 Sum_probs=23.3
Q ss_pred CCCHHHHHHHHHHHHCC-CEEEEECCCH
Q ss_conf 79999999999999759-8599907780
Q gi|254780760|r 6 ITDSNALRKACEFLDAG-LPIAIPTETV 32 (330)
Q Consensus 6 ~~d~~~i~~a~~~L~~G-~~v~~PTeTv 32 (330)
+++.+.++++++.|.++ ++|++=|||+
T Consensus 21 I~t~~~l~~~~~~L~~~~~~iavDtE~~ 48 (440)
T 3cym_A 21 IDTLPAFRDYCSELASSHGSLAADAERA 48 (440)
T ss_dssp ECSHHHHHHHHHHHHSCEEEEEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 5899999999999971799189979867
No 19
>1yle_A Arginine N-succinyltransferase, alpha chain; structural genomics, acyltransferase, arginine metabolism, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa} SCOP: d.108.1.8
Probab=20.72 E-value=16 Score=15.92 Aligned_cols=13 Identities=38% Similarity=0.498 Sum_probs=8.5
Q ss_pred HCCCCCCCCCCCCC
Q ss_conf 06554211276645
Q gi|254780760|r 159 ICKEIPLIIDGGIS 172 (330)
Q Consensus 159 ~~~~i~~ildgg~~ 172 (330)
+.+.|| |.|||||
T Consensus 249 ~~g~VD-IFDgGP~ 261 (342)
T 1yle_A 249 TDNYID-IFDGGPT 261 (342)
T ss_dssp EEEEEC-TTTCCEE
T ss_pred CCCCEE-CCCCCCE
T ss_conf 589510-4278954
Done!