HHSEARCH alignment of GI: 254780760 and SCOP domain: d1hrua_

Alignment
>d1hrua_ d.115.1.1 (A:) Hypothetical protein YrdC {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=0  Score=334.92  Aligned_cols=179  Identities=26%  Similarity=0.358  Sum_probs=161.9

Q ss_pred             CHHHHHHHHHHHHCCCEEEEECCCHHEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHH---CCCHHHHHH
Q ss_conf             99999999999975985999077800040279999999999997088810654999679899776420---052046899
Q gi|254780760|r    8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS---VDPLSLHLA   84 (330)
Q Consensus         8 d~~~i~~a~~~L~~G~~v~~PTeTvYGlg~~a~~~~av~~I~~~K~Rp~~~Pli~~v~~~~~~~~~~~---~~~~~~~l~   84 (330)
                      +.+.|++|+++|++|++|+|||||+||||||++|++||+|||++|+|+.++|+++++++++++..|+.   ..+...+++
T Consensus         4 ~~d~i~~a~~~L~~G~iv~~PTdt~Ygl~~~~~~~~av~~i~~~K~R~~~kp~~vlv~~~~~~~~~~~~~~~~~~~~~~~   83 (186)
T d1hrua_           4 QRDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQLKPYIDDTMLTDVQRETI   83 (186)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEECSSSEEEEECTTCHHHHHHHHHHHTCCGGGCCEEEESSHHHHGGGCCCTTCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHCCCEEEEECCCEEEEEEECCCHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             87999999999976998999878631788958996899999986300113320023205665333301440479999999


Q ss_pred             HHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf             85058871886146787811655544457633224156-67666420142121234333485433017777664406554
Q gi|254780760|r   85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEI  163 (330)
Q Consensus        85 ~~fwPGplT~il~~~~~~~i~~~~t~~~~tvavRiP~h-~~~~ll~~~~~Piaa~SAN~sG~~Spt~a~~v~~~~~~~~i  163 (330)
                      ++|||||+|+|+|.++  .++++++.+.+|||||+|+| ++++|++++|.||++||||+||++++++.+++. +.|++.+
T Consensus        84 ~~~~Pgplt~i~~~~~--~~~~~~~~~~~tigvRiP~~~~~~~L~~~~g~Pl~~TSAN~sG~~~~~~~~~i~-~~~~~~v  160 (186)
T d1hrua_          84 FSRWPGPVTFVFPAPA--TTPRWLTGRFDSLAVRVTDHPLVVALCQAYGKPLVSTSANLSGLPPCRTVDEVR-AQFGAAF  160 (186)
T ss_dssp             HTTCSSSEEEEEECCT--TSCHHHHTTSSEEEEEECCCHHHHHHHHHHTSCEEEEESCCTTSCCCCSHHHHH-HHHCTTS
T ss_pred             HHCCCCCCEECCCCCC--CCCCHHHHCCCEEEEEECHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHH-HHHCCCC
T ss_conf             8669976410355545--786012203321233202168899999983990796112569899877199999-9838974


Q ss_pred             CCCCCCCCCCCCCCCEEEEEECCCCEEEEE
Q ss_conf             211276645667673069962698243442
Q gi|254780760|r  164 PLIIDGGISKIGLESTIVNVQCEKKVRILR  193 (330)
Q Consensus       164 ~~ildgg~~~~GieSTiid~~~~~~~~IlR  193 (330)
                      ++|+|++.+ .+.+|||||+++ +  +|+|
T Consensus       161 d~i~~~~~~-~~~~STIid~~~-~--~iiR  186 (186)
T d1hrua_         161 PVVPGETGG-RLNPSEIRDALT-G--ELFR  186 (186)
T ss_dssp             CBCCCCCCS-SCCCCEEEETTT-S--SBCC
T ss_pred             EEEECCCCC-CCCCCEEEECCC-C--EEEC
T ss_conf             899789877-789858898969-9--8849


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: YrdC/RibB
superfamily: YrdC/RibB
family: YrdC-like
domain: Hypothetical protein YrdC
species: Escherichia coli [TaxId: 562]