BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780760|ref|YP_003065173.1| hypothetical protein CLIBASIA_03235 [Candidatus Liberibacter asiaticus str. psy62] (330 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780760|ref|YP_003065173.1| hypothetical protein CLIBASIA_03235 [Candidatus Liberibacter asiaticus str. psy62] gi|254040437|gb|ACT57233.1| hypothetical protein CLIBASIA_03235 [Candidatus Liberibacter asiaticus str. psy62] Length = 330 Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/330 (100%), Positives = 330/330 (100%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL Sbjct: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP Sbjct: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI Sbjct: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA Sbjct: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS Sbjct: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300 Query: 301 SIPNHGLGIAINNRLERAAAPRNQSQRIVP 330 SIPNHGLGIAINNRLERAAAPRNQSQRIVP Sbjct: 301 SIPNHGLGIAINNRLERAAAPRNQSQRIVP 330 >gi|315121975|ref|YP_004062464.1| hypothetical protein CKC_01125 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495377|gb|ADR51976.1| hypothetical protein CKC_01125 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 320 Score = 520 bits (1338), Expect = e-145, Method: Compositional matrix adjust. Identities = 251/319 (78%), Positives = 285/319 (89%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 MSITDS+ L++ACEFLDAGLPI IPTETVYGLAV++R+P+AIRRLYEIK+RP NPLICH Sbjct: 1 MSITDSDVLQQACEFLDAGLPIVIPTETVYGLAVNARDPSAIRRLYEIKQRPPTNPLICH 60 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 VS+ISMVKK+A +D LSLHL+KLFWPGPLTLVLDLLS DIHPL+ +NL TACFRVP GF Sbjct: 61 VSNISMVKKYAHIDDLSLHLSKLFWPGPLTLVLDLLSENDIHPLAISNLNTACFRVPRGF 120 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 KKLI+TYG+PLAIPSAN SGQIS TN++HILSS ICK+IPL IDGGISKIGLESTIVNV Sbjct: 121 AKKLIDTYGYPLAIPSANISGQISTTNIQHILSSPICKQIPLAIDGGISKIGLESTIVNV 180 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 + ++ + ILRPGGLEI+ +++AI ++EY ET+TP SPG L+SHYAPRSQVRLRA H+ Sbjct: 181 KHDQTIHILRPGGLEIDKIEKAIGGKIEYSTSETATPLSPGRLQSHYAPRSQVRLRATHI 240 Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303 NP EALIRF N PIKN +NAIISLNLSK+GKLKEAAFNLFNYMKIADDSGA SIAFS IP Sbjct: 241 NPGEALIRFANFPIKNSKNAIISLNLSKSGKLKEAAFNLFNYMKIADDSGAISIAFSPIP 300 Query: 304 NHGLGIAINNRLERAAAPR 322 NHGLGIAINNRLERAAAPR Sbjct: 301 NHGLGIAINNRLERAAAPR 319 >gi|159184438|ref|NP_353749.2| hypothetical protein Atu0724 [Agrobacterium tumefaciens str. C58] gi|159139751|gb|AAK86534.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 325 Score = 337 bits (863), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 168/314 (53%), Positives = 217/314 (69%), Gaps = 1/314 (0%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 AL+ + L G PIA+PTETVYGLA D+ NP AI R+YE K RP NPLICH++DI+M Sbjct: 13 TALQASVAELADGRPIALPTETVYGLAADATNPAAITRIYETKGRPQFNPLICHMADIAM 72 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129 +++A DP+S LA+ FWPGPLTLVL L +DIH L+TA L T RVP GF LI Sbjct: 73 AERYAVFDPISRKLAEAFWPGPLTLVLPLKPESDIHSLATAGLDTVGIRVPQGFASDLIR 132 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 +G PLA PSAN SG+IS T+ H+ + + ++I L++DGG + +G+ESTIV V+ + +V Sbjct: 133 RFGKPLAAPSANSSGKISPTSAAHV-EADLGQKINLVLDGGAAAVGVESTIVKVEQDGRV 191 Query: 190 RILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREAL 249 R+LRPGG+ E ++R V LE ++ ++PGML SHYAP + VRL A V P EAL Sbjct: 192 RLLRPGGIVTEEIERLAGVRLERPKKASAAIEAPGMLASHYAPGATVRLGATSVLPDEAL 251 Query: 250 IRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGI 309 IRFG + I E A L+LS +G L EAA NLF+Y+K AD SGA +IA ++IP HGLG Sbjct: 252 IRFGGIAISGEETARTILDLSPSGDLAEAAANLFDYLKAADASGADTIAITAIPTHGLGE 311 Query: 310 AINNRLERAAAPRN 323 AIN+RL RAAAPR Sbjct: 312 AINDRLSRAAAPRG 325 >gi|325292109|ref|YP_004277973.1| hypothetical protein AGROH133_04322 [Agrobacterium sp. H13-3] gi|325059962|gb|ADY63653.1| hypothetical protein AGROH133_04322 [Agrobacterium sp. H13-3] Length = 325 Score = 332 bits (851), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 165/314 (52%), Positives = 216/314 (68%), Gaps = 1/314 (0%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 AL+ A E L G PIA+PTETVYGLA D+ +P AI R+YE K RP NPLICH++DI+M Sbjct: 13 TALQAAVEELSRGQPIALPTETVYGLAADATDPAAITRIYETKGRPQFNPLICHMADIAM 72 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129 +++A DP+S LA+ FWPGPLTLVL L + IH L+TA L T RVP GF LI Sbjct: 73 AERYAVFDPVSRRLAEAFWPGPLTLVLPLKPASGIHSLATAGLDTVGIRVPQGFAGDLIR 132 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 + PLA PSAN SG+IS T+ H+ + + I LI+DGG + +G+ESTIV V+ + +V Sbjct: 133 RFDKPLAAPSANSSGKISPTSAAHV-EADLGNRINLILDGGAASVGVESTIVKVEDDGRV 191 Query: 190 RILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREAL 249 R+LRPGG+ E ++R +LE ++ ++PGML SHYAP + VRL A V+ EAL Sbjct: 192 RLLRPGGIVTEEIERITGTQLERPEKASAAIEAPGMLASHYAPGAAVRLDATSVSANEAL 251 Query: 250 IRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGI 309 IRFG + ++ E A L+LS +G L EAA NLF+Y+K AD SGA++IA ++IP HGLG Sbjct: 252 IRFGGIAVEGQETARTVLDLSPSGDLAEAAANLFDYLKAADASGAATIAVTTIPAHGLGE 311 Query: 310 AINNRLERAAAPRN 323 AIN+RL RAAAPR Sbjct: 312 AINDRLSRAAAPRG 325 >gi|222085082|ref|YP_002543612.1| translation factor sua5 protein [Agrobacterium radiobacter K84] gi|221722530|gb|ACM25686.1| translation factor sua5 protein [Agrobacterium radiobacter K84] Length = 324 Score = 330 bits (846), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 165/302 (54%), Positives = 213/302 (70%), Gaps = 2/302 (0%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81 GLPI +PTETVYGLA D+ NP AI R+YE K RP NPLICH+SD++M +++A DP+S Sbjct: 25 GLPIGLPTETVYGLAADATNPAAITRIYETKGRPRFNPLICHMSDLAMAERYAIFDPVSR 84 Query: 82 HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSAN 141 LA+ FWPGPLTLVL L +DIHPL+TA L T R+P GF +LI +G PLA PSAN Sbjct: 85 KLAEAFWPGPLTLVLPLRPESDIHPLATAGLDTVGIRIPQGFAGELIRAFGRPLAAPSAN 144 Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIET 201 SG+IS T+ H+ + + I LI+D G S +G+ESTIV V+ ++R+LRPGGL + Sbjct: 145 TSGKISATSADHV-HDDLGERISLILDAGASVVGVESTIVKVE-HGEMRLLRPGGLAADE 202 Query: 202 LKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIE 261 ++R L+ ++ ++PGML SHYAP + VRL A V+ EALIRFG I IE Sbjct: 203 IERVAGQSLKRKNGASAAIEAPGMLASHYAPGAAVRLDATAVSSGEALIRFGKPDIAGIE 262 Query: 262 NAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 A + L+LS +G L EAA NLF++MK AD SGA++IAFSSIP+ GLG AIN+RL+RAAAP Sbjct: 263 TAAVVLDLSPSGDLAEAAANLFDFMKRADASGAATIAFSSIPDEGLGEAINDRLQRAAAP 322 Query: 322 RN 323 R Sbjct: 323 RE 324 >gi|86356545|ref|YP_468437.1| translation factor sua5 protein [Rhizobium etli CFN 42] gi|86280647|gb|ABC89710.1| probable translation factor sua5 protein [Rhizobium etli CFN 42] Length = 336 Score = 327 bits (839), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 168/313 (53%), Positives = 210/313 (67%), Gaps = 2/313 (0%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 AL AC L G IA+PTETVYGLA D+ NP AI R+YE K RP NPLICH++D+ M Sbjct: 23 TALEAACAALSDGFAIAMPTETVYGLAADATNPAAITRIYETKGRPRFNPLICHMADLEM 82 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129 ++HA DP+S LA+ FWPGPLTLVL L + + IH L+TA L + RVP GF LI Sbjct: 83 AEQHAEFDPVSRALAEAFWPGPLTLVLPLKAESPIHALATAGLDSVGVRVPKGFAGTLIG 142 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 +G PLA PSAN SG IS T+ H+ + + +IPLI+D G S +G+ESTIV V+ + +V Sbjct: 143 AFGRPLAAPSANTSGAISATSAAHV-EADLGAKIPLILDAGPSTVGVESTIVKVEGD-RV 200 Query: 190 RILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREAL 249 R+LRPGGL ++R L ++ ++PGML SHYAP + VRL A V P EAL Sbjct: 201 RLLRPGGLAAREIERIAGRPLLRAKKASAAIEAPGMLASHYAPGASVRLNASAVEPGEAL 260 Query: 250 IRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGI 309 I FG ++ +A I L+LS G L EAA NLF+YMK AD SG SSIAFS IP+ GLG Sbjct: 261 IAFGGAVVEGARDARIVLDLSPRGDLAEAAANLFDYMKRADASGVSSIAFSPIPDDGLGE 320 Query: 310 AINNRLERAAAPR 322 AIN+RL+RAAAPR Sbjct: 321 AINDRLQRAAAPR 333 >gi|190890611|ref|YP_001977153.1| translation factor protein [Rhizobium etli CIAT 652] gi|190695890|gb|ACE89975.1| probable translation factor protein [Rhizobium etli CIAT 652] Length = 334 Score = 326 bits (836), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 168/313 (53%), Positives = 210/313 (67%), Gaps = 2/313 (0%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 AL A L G IA+PTETVYGLA D+ NP AI R+YE K RP NPLICH++D++M Sbjct: 24 ALEAASTALADGFAIAMPTETVYGLAADATNPAAITRIYETKGRPRFNPLICHMADLAMA 83 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130 + HA+ DPLS LA+ FWPGPLTLVL L + IH L+TA L + RVP GF LI Sbjct: 84 EHHAAFDPLSRALAEAFWPGPLTLVLPLKPESPIHSLATAGLDSVGVRVPKGFAGALIGA 143 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 +G PLA PSAN SG IS T+ H+ + + +IPLI+D G S +G+ESTIV V+ + +VR Sbjct: 144 FGRPLAAPSANTSGAISATSAAHV-EADLGAKIPLILDAGPSAVGVESTIVKVEGD-RVR 201 Query: 191 ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALI 250 +LRPGGL ++R L ++ ++PGML SHYAP + VRL A V P EALI Sbjct: 202 LLRPGGLAAREVERVAGRPLLRAKKASAAIEAPGMLASHYAPGASVRLNASAVEPGEALI 261 Query: 251 RFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIA 310 FG ++ +A I L+LS G L EAA NLF+YMK AD SG SSIAFS IP+ GLG A Sbjct: 262 AFGGAAVEGARDARIVLDLSPRGDLAEAAANLFDYMKRADASGVSSIAFSPIPDDGLGEA 321 Query: 311 INNRLERAAAPRN 323 IN+RL+RAAAPR+ Sbjct: 322 INDRLQRAAAPRD 334 >gi|209548153|ref|YP_002280070.1| Sua5/YciO/YrdC/YwlC family protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533909|gb|ACI53844.1| Sua5/YciO/YrdC/YwlC family protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 324 Score = 324 bits (830), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 164/302 (54%), Positives = 204/302 (67%), Gaps = 2/302 (0%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81 G IAIPTETVYGLA D+ NP AI R+YE K RP NPLICH++D++M ++HA DP+S Sbjct: 25 GFAIAIPTETVYGLAADATNPAAITRIYETKGRPRFNPLICHMADLAMAEEHAEFDPVSR 84 Query: 82 HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSAN 141 LA FWPGPLTLVL L + IH L+TA L + RVP GF LI +G PLA PSAN Sbjct: 85 ALAAAFWPGPLTLVLPLKPQSPIHSLATAGLDSVGVRVPKGFAGALIGAFGRPLAAPSAN 144 Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIET 201 SG IS T+ H+ + + ++PLI+D G S +G+ESTIV V+ + +VR+LRPGGL Sbjct: 145 TSGAISATSAAHV-EADLGAKVPLILDAGPSTVGVESTIVKVEGD-RVRLLRPGGLAARE 202 Query: 202 LKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIE 261 ++R L ++ ++PGML SHYAP + VRL A V P EALI FG + Sbjct: 203 IERVAGRPLLRAKTASAAIEAPGMLASHYAPGAAVRLNATAVEPGEALIAFGGAAVSGTN 262 Query: 262 NAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 A I L+LS G L EAA NLF+YMK AD SGASSIAFS+IP GLG AIN+RL+RAAAP Sbjct: 263 GARIVLDLSPRGDLAEAAANLFDYMKRADASGASSIAFSAIPEEGLGEAINDRLQRAAAP 322 Query: 322 RN 323 R+ Sbjct: 323 RD 324 >gi|218682976|ref|ZP_03530577.1| probable translation factor protein [Rhizobium etli CIAT 894] Length = 334 Score = 322 bits (824), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 164/302 (54%), Positives = 205/302 (67%), Gaps = 2/302 (0%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81 G IAIPTETVYGLA D+ NP AI R+YE K RP NPLICH++D++M ++HA DP+S Sbjct: 35 GFAIAIPTETVYGLAADATNPAAITRIYETKGRPRFNPLICHMADLAMAEEHAEFDPVSR 94 Query: 82 HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSAN 141 LA FWPGPLTLVL L + IH L+TA L + RVP GF LI +G PLA PSAN Sbjct: 95 ALAAAFWPGPLTLVLPLKPESPIHSLATAGLDSVGIRVPKGFAGALIGAFGRPLAAPSAN 154 Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIET 201 SG IS T+ H+ + + ++PLI+D G S +G+ESTIV V+ + ++R+LRPGGL Sbjct: 155 TSGAISATSAAHV-EADLGAKVPLILDAGPSAVGVESTIVKVEGD-RLRLLRPGGLAARE 212 Query: 202 LKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIE 261 ++R L ++ ++PGML SHYAP + VRL A V P EALI FG+ + E Sbjct: 213 IERVAGRPLLRAKTASAAIEAPGMLASHYAPGAAVRLNARTVEPGEALIGFGSAAVSGAE 272 Query: 262 NAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 A I L+LS G L EAA NLF+YMK AD SGASSIAFS IP GLG AIN+RL+RAAAP Sbjct: 273 AARIVLDLSPRGDLAEAAANLFDYMKRADASGASSIAFSPIPEEGLGEAINDRLQRAAAP 332 Query: 322 RN 323 R+ Sbjct: 333 RD 334 >gi|241203341|ref|YP_002974437.1| Sua5/YciO/YrdC/YwlC family protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857231|gb|ACS54898.1| Sua5/YciO/YrdC/YwlC family protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 324 Score = 319 bits (818), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 161/302 (53%), Positives = 202/302 (66%), Gaps = 2/302 (0%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81 G IAIPTETVYGLA D+ NP AI R+YE K RP NPLICH++D++M ++HA DP+S Sbjct: 25 GFAIAIPTETVYGLAADATNPAAITRIYETKGRPRFNPLICHMADLAMAEEHAEFDPVSR 84 Query: 82 HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSAN 141 LA+ FWPGPLTLVL L + IH L+ A L + RVP GF LI +G PLA PSAN Sbjct: 85 ALARAFWPGPLTLVLPLKPQSSIHSLAIAGLDSVGIRVPKGFAGALIGAFGRPLAAPSAN 144 Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIET 201 SG +S T+ H+ + + IPLI+D G S +G+ESTIV + ++R+LRPGGL Sbjct: 145 TSGGVSATSAAHV-EADLGARIPLILDAGPSAVGVESTIVKAEG-GRLRLLRPGGLAARE 202 Query: 202 LKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIE 261 ++R L ++ ++PGML SHYAP + VRL A V P EALI FG+ + E Sbjct: 203 IERVAGQPLLRARTASAAIEAPGMLASHYAPGASVRLNATAVEPGEALIAFGSAAVSGAE 262 Query: 262 NAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 +A I L+LS G L EAA NLF+YMK AD SGA SIAFS IP GLG AIN+RL+RAAAP Sbjct: 263 SARIVLDLSPRGDLAEAAANLFDYMKRADASGAQSIAFSPIPEEGLGEAINDRLQRAAAP 322 Query: 322 RN 323 R+ Sbjct: 323 RD 324 >gi|222147737|ref|YP_002548694.1| hypothetical protein Avi_0976 [Agrobacterium vitis S4] gi|221734725|gb|ACM35688.1| conserved hypothetical protein [Agrobacterium vitis S4] Length = 323 Score = 318 bits (816), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 159/312 (50%), Positives = 212/312 (67%), Gaps = 2/312 (0%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 A+R A L+AG IA+PTETVYGLA D+ NP AI R+YE K RP NPLICHV+D++M Sbjct: 14 AIRAALPLLEAGEVIAMPTETVYGLAADATNPQAITRIYETKGRPQFNPLICHVADLAMA 73 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130 + + DPLS LA+ FWPGPLTL++ L IHPL+TA L T R+P GF +LI Sbjct: 74 EHYGVFDPLSRQLAERFWPGPLTLIVPLAPDCAIHPLATAGLDTVGLRMPLGFAAELIAA 133 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 +G PLA PSAN SG+IS T H+ + +IPLI+D + +G+ESTI+ V+ + +++ Sbjct: 134 FGKPLAAPSANTSGKISPTTAAHV-EEDLGAKIPLILDAEAAGVGVESTILKVE-DGQIQ 191 Query: 191 ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALI 250 +LRPGGL +E ++ A + + + ++PGML SHYAP + VRL V EA+I Sbjct: 192 LLRPGGLSVEAVEEATGLRVIRPQKAGAIIEAPGMLASHYAPEAAVRLNVTSVYADEAVI 251 Query: 251 RFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIA 310 FG+ + +E A + LNLS +G L EAA NLF++MK AD SGA+ IAF++IP HGLG A Sbjct: 252 TFGSAVPQGLEKAALVLNLSASGDLTEAAANLFSFMKRADASGAARIAFTAIPTHGLGDA 311 Query: 311 INNRLERAAAPR 322 IN+RLERAAAPR Sbjct: 312 INDRLERAAAPR 323 >gi|116250734|ref|YP_766572.1| Sua5 family protein [Rhizobium leguminosarum bv. viciae 3841] gi|115255382|emb|CAK06457.1| putative Sua5 family protein [Rhizobium leguminosarum bv. viciae 3841] Length = 324 Score = 316 bits (810), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 163/302 (53%), Positives = 204/302 (67%), Gaps = 2/302 (0%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81 G IAIPTETVYGLA D+ NP AI R+YE K RP NPLICH++D++M ++HA DPLS Sbjct: 25 GFAIAIPTETVYGLAADATNPLAIARIYETKGRPRFNPLICHMADLAMAEEHAEFDPLSR 84 Query: 82 HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSAN 141 LAK FWPGPLTLVL L + IH L+TA L + RVP GF LI +G PLA PSAN Sbjct: 85 ALAKAFWPGPLTLVLPLKRESPIHSLATAGLDSVGIRVPKGFAGALIGAFGRPLAAPSAN 144 Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIET 201 SG +S T+ H+ + + +IPLI+D G S +G+ESTIV + ++R+LRPGGL Sbjct: 145 TSGGVSATSAAHV-EADLGAKIPLILDAGPSAVGVESTIVKAEG-GRLRLLRPGGLAARE 202 Query: 202 LKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIE 261 ++R L ++ ++PGML SHYAP + VRL A V P EALI FG+ + + Sbjct: 203 IERIAGQPLLRAKAASAAIEAPGMLASHYAPGASVRLNATAVEPGEALIAFGSAAVSGAD 262 Query: 262 NAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 +A I L+LS G L EAA NLF+YMK AD SGA SIAFS IP GLG AIN+RL+RAAAP Sbjct: 263 SARIVLDLSPHGDLAEAAANLFDYMKRADASGARSIAFSPIPEEGLGEAINDRLQRAAAP 322 Query: 322 RN 323 R+ Sbjct: 323 RD 324 >gi|163761038|ref|ZP_02168116.1| hypothetical protein HPDFL43_03344 [Hoeflea phototrophica DFL-43] gi|162281819|gb|EDQ32112.1| hypothetical protein HPDFL43_03344 [Hoeflea phototrophica DFL-43] Length = 323 Score = 312 bits (799), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 159/323 (49%), Positives = 220/323 (68%), Gaps = 3/323 (0%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 QI++++D N LR A E L G +A+PTETVYGLA D+ NP+AI +YE K RP NPLI Sbjct: 3 QILTVSDPNTLRAAVEALRRGEAVAVPTETVYGLAADATNPSAITAIYEAKGRPRFNPLI 62 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 HVSD+ M + H PL+ LA FWPGPLTLVL L IH L+TA L+TA R+P Sbjct: 63 SHVSDMDMARAHVLFTPLAEKLAAAFWPGPLTLVLPLNPDGGIHELATAGLETAAVRIPE 122 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 GF + LI+++G PLA PSANRSG+IS T+ +H+ + + I L++DGG ++G+ESTI+ Sbjct: 123 GFARTLIKSFGGPLAAPSANRSGRISPTSARHV-ADDLDGRINLVLDGGPCRVGVESTIL 181 Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEY-CVDETSTPQSPGMLKSHYAPRSQVRLRA 240 V + K+ +LRPGG+ ++ ++ A V ++ D ++ +PGMLKSHYAP + +RL A Sbjct: 182 AVNGD-KLTLLRPGGIPVDAIETAAGVAVDRPGPDAQTSVIAPGMLKSHYAPDAALRLNA 240 Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300 V P EA+++FG P+ + A + L+LS G L+EAA NLF+ +K AD S A+ IA + Sbjct: 241 TSVLPGEAILQFGGKPLDGQDKASLVLDLSPLGDLREAAANLFSMLKRADASQATGIAVA 300 Query: 301 SIPNHGLGIAINNRLERAAAPRN 323 +P HGLG AIN+RL RAAAPR+ Sbjct: 301 PVPQHGLGEAINDRLNRAAAPRD 323 >gi|227821062|ref|YP_002825032.1| Sua5 family protein [Sinorhizobium fredii NGR234] gi|227340061|gb|ACP24279.1| Sua5 family protein [Sinorhizobium fredii NGR234] Length = 324 Score = 311 bits (797), Expect = 9e-83, Method: Compositional matrix adjust. Identities = 160/317 (50%), Positives = 213/317 (67%), Gaps = 2/317 (0%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I A+ KAC L G P+AIPTETVYGLA D+ N AI R+YE+K RP NPLICHVS Sbjct: 9 IEPDRAIEKACAALSEGEPVAIPTETVYGLAADATNADAISRIYEMKGRPRFNPLICHVS 68 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125 D++M + H DPLS LA+ FWPGPLTL+L + +H L++A L+T R+P GF++ Sbjct: 69 DMAMAEAHVVFDPLSRRLAEAFWPGPLTLILPERRESTVHALASAGLETLGIRMPEGFSR 128 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 ++I +G PLA PSAN SG+IS T+ H+ + + ++ LI+D G ++IGLESTI+ V+ Sbjct: 129 RVISHFGRPLAAPSANTSGKISPTSAAHV-EADLGAKLGLILDAGPAEIGLESTIIKVEA 187 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245 ++R+LRPGGL+ ++ + + +T ++PGML SHYAP + VRL A V Sbjct: 188 -GRLRLLRPGGLDAAEIEALTGLTVGRPEAAGATIEAPGMLASHYAPGAAVRLNAKDVRK 246 Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305 EALIRFG + A I L+LS +G L+EAA NLF+YMK AD SG SSIAF +P+ Sbjct: 247 GEALIRFGGKALPGESAAAIVLDLSPSGNLREAAANLFDYMKRADASGVSSIAFGPVPSE 306 Query: 306 GLGIAINNRLERAAAPR 322 GLG AI +RLERAAAPR Sbjct: 307 GLGEAIVDRLERAAAPR 323 >gi|15964621|ref|NP_384974.1| hypothetical protein SMc00984 [Sinorhizobium meliloti 1021] gi|307309367|ref|ZP_07589030.1| Sua5/YciO/YrdC/YwlC family protein [Sinorhizobium meliloti BL225C] gi|307320103|ref|ZP_07599524.1| Sua5/YciO/YrdC/YwlC family protein [Sinorhizobium meliloti AK83] gi|15073799|emb|CAC45440.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021] gi|306894318|gb|EFN25083.1| Sua5/YciO/YrdC/YwlC family protein [Sinorhizobium meliloti AK83] gi|306900236|gb|EFN30854.1| Sua5/YciO/YrdC/YwlC family protein [Sinorhizobium meliloti BL225C] Length = 324 Score = 310 bits (793), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 158/318 (49%), Positives = 211/318 (66%), Gaps = 2/318 (0%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I A+ KAC L G P+AIPTETVYGLA D+ P AI R+YE+K RP NPLICHV Sbjct: 9 IEPERAIEKACAVLSDGEPVAIPTETVYGLAADATTPDAISRIYEMKGRPRFNPLICHVC 68 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125 D++M + H + DP+S LA+ FWPGPLTL+L + +H L++A L T R+P GF++ Sbjct: 69 DLAMAEAHVTFDPVSRRLAEAFWPGPLTLILPQRRESTVHTLASAGLDTLGIRMPDGFSR 128 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 ++I +G PLA PSAN SG+IS T+ H+ + + + LI+D G + IGLESTIV V+ Sbjct: 129 RVIARFGRPLAAPSANTSGKISPTSAAHV-QADLGSRLKLILDAGPAAIGLESTIVKVE- 186 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245 ++R+LRPGGL+ ++ + +E + ++PGML SHYAP + VRL A V Sbjct: 187 NGRLRLLRPGGLDAAEIEALTGLAIERPEAAGAVIEAPGMLASHYAPGAAVRLDADEVRK 246 Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305 EALIRFG + +A I L+LS G L+EAA NLF+YMK AD SGA++IAF IP+ Sbjct: 247 GEALIRFGGEALPGEADAAIVLDLSPGGSLREAAANLFDYMKKADASGAATIAFGPIPSE 306 Query: 306 GLGIAINNRLERAAAPRN 323 GLG AI +RL+RAAAPR Sbjct: 307 GLGEAIIDRLQRAAAPRG 324 >gi|150395706|ref|YP_001326173.1| Sua5/YciO/YrdC/YwlC family protein [Sinorhizobium medicae WSM419] gi|150027221|gb|ABR59338.1| Sua5/YciO/YrdC/YwlC family protein [Sinorhizobium medicae WSM419] Length = 324 Score = 307 bits (786), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 158/318 (49%), Positives = 210/318 (66%), Gaps = 2/318 (0%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I A+ AC L P+AIPTETVYGLA D+ AI R+YE+K RP NPLICHVS Sbjct: 9 IEPERAIETACAVLSDAEPVAIPTETVYGLAADATTSDAISRIYEMKGRPRFNPLICHVS 68 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125 D++M + H + DPLS LA+ FWPGPLTL+L + +H L++A L T R+P GF++ Sbjct: 69 DLAMAEAHVTFDPLSRRLAEAFWPGPLTLILPQRHESTVHTLASAGLDTLGIRMPDGFSR 128 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 ++I +G PLA PSAN SG+IS T+ H+ + + LI+D G + IGLESTIV V Sbjct: 129 RVIARFGRPLAAPSANTSGKISPTSAAHV-QGDLGPRLKLILDAGPAAIGLESTIVKVD- 186 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245 +R+LRPGGL+ ++ + +E +T ++PGML SHYAPR+ VR+ A V Sbjct: 187 NGALRLLRPGGLDAAEIEALTGLAIERPETAGATIEAPGMLASHYAPRAAVRINADDVRR 246 Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305 EALIRFG + +A I ++LS TG L+EAA NLF+YMK AD SGA++IAF IP+ Sbjct: 247 GEALIRFGGKALPGEGDAAIVMDLSPTGSLREAAANLFDYMKKADVSGAATIAFGPIPSE 306 Query: 306 GLGIAINNRLERAAAPRN 323 GLG AI +RL+RAAAPR+ Sbjct: 307 GLGEAIIDRLQRAAAPRS 324 >gi|319408205|emb|CBI81858.1| conserved hypothetical protein [Bartonella schoenbuchensis R1] Length = 320 Score = 296 bits (757), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 155/317 (48%), Positives = 211/317 (66%), Gaps = 3/317 (0%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 +S ++++A E L G +A+PTETVYGLA D+ N A+ ++ KKRP NPLI HVS I Sbjct: 7 NSASIKEAVEVLKQGQLVALPTETVYGLAGDATNGKAVASIFTTKKRPQFNPLIVHVSSI 66 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 M + + +D LS + FWPGPLTLVL L +IHPL+T+ L T R P G ++ Sbjct: 67 VMAEHYVEIDLLSRRFMEAFWPGPLTLVLPLKVNHNIHPLTTSGLDTLAVRFPVGGFAEV 126 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ +G PLA PSAN+SG +S T+ + +S+ +PLIIDGG+SKIGLESTI+ V C+K Sbjct: 127 VQHFGRPLAAPSANQSGGLSPTSAASVF-ASLGASVPLIIDGGVSKIGLESTIIKV-CDK 184 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 + +LRPGG+ E ++ L+ +D+ + ++PGMLKSHYAP + VRL A V E Sbjct: 185 NIYLLRPGGVTAEEIEEVAGQPLKQ-LDQRAAIEAPGMLKSHYAPNALVRLNAQKVESDE 243 Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307 AL+ FG I ENAI LNLS++G+L+EAAF+LF+YMK D IA SIP +GL Sbjct: 244 ALLAFGPKRIVGAENAISILNLSESGQLEEAAFHLFDYMKQLDSLKVRCIAVESIPFYGL 303 Query: 308 GIAINNRLERAAAPRNQ 324 G+AIN+RL RAAAPR + Sbjct: 304 GVAINDRLMRAAAPRGK 320 >gi|110633072|ref|YP_673280.1| translation factor SUA5 [Mesorhizobium sp. BNC1] gi|110284056|gb|ABG62115.1| translation factor SUA5 [Chelativorans sp. BNC1] Length = 318 Score = 295 bits (754), Expect = 9e-78, Method: Compositional matrix adjust. Identities = 153/314 (48%), Positives = 202/314 (64%), Gaps = 5/314 (1%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 AL AC L AG P+AIPTETVYGLA D+RN A+ R++E K RP NPLI H++D+ M Sbjct: 10 ALDAACRLLAAGEPVAIPTETVYGLAADARNGEAVARIFEAKGRPRFNPLIAHMADLEMA 69 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130 + A PL+L LA+ FWPGPLTLVL IHPL TA L T R P GF +I Sbjct: 70 GRFAVFSPLALRLAQAFWPGPLTLVLPHRPDLGIHPLVTAGLDTLALRCPQGFAANVIAR 129 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 +G PLA PSAN SG+++ T + + ++++ I L++DGG +++GLESTIV V E + Sbjct: 130 FGRPLAAPSANISGRVTGTTAEAV-NAALGDRIRLVVDGGPARVGLESTIVKVADETLI- 187 Query: 191 ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALI 250 +LRPGGL E ++R + L+ + Q+PGML SHYAP + +RL A V EAL+ Sbjct: 188 LLRPGGLAAEEIERVAGMSLKRGANGV---QAPGMLASHYAPHAAIRLDASEVLAGEALL 244 Query: 251 RFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIA 310 FG K + A + LNLS +G L+EAA NLF+++ D GA +IA +P HGLG A Sbjct: 245 GFGPDRAKGADQAAMVLNLSPSGDLREAAANLFSHLATLDAGGAKTIAVEPVPRHGLGEA 304 Query: 311 INNRLERAAAPRNQ 324 IN+RL RAAAPR+Q Sbjct: 305 INDRLARAAAPRDQ 318 >gi|260460343|ref|ZP_05808595.1| Sua5/YciO/YrdC/YwlC family protein [Mesorhizobium opportunistum WSM2075] gi|259033988|gb|EEW35247.1| Sua5/YciO/YrdC/YwlC family protein [Mesorhizobium opportunistum WSM2075] Length = 324 Score = 289 bits (740), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 155/321 (48%), Positives = 199/321 (61%), Gaps = 4/321 (1%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + AL +A L G +AIPTETVYGLA D+ N + R++E K RP NPLI HV+ Sbjct: 5 VGAGEALERALALLQGGDVVAIPTETVYGLAGDATNGIGVARIFEAKGRPRFNPLIAHVA 64 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125 D++M ++ A DPLS LA FWPGPLTLVL IHPL TA L T R+P GF Sbjct: 65 DMAMAERIALFDPLSKKLAIAFWPGPLTLVLPQRPGNGIHPLVTAGLDTIALRMPRGFGG 124 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LI G PLA PSAN SG+IS T + + ++ + I L++DGG + +GLESTIV + Sbjct: 125 DLIARLGRPLAAPSANSSGKISATTAQAV-AADLGARIRLVVDGGATPVGLESTIVKAEA 183 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245 ++R+LRPGG+ E ++ A+ +EL + ++PGML SHYAP + VRL A V Sbjct: 184 -GRLRLLRPGGIAAEDIEAAVGMEL--LRGGGAGVEAPGMLASHYAPGAAVRLNAGTVGD 240 Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305 EAL+ FGN + A NLS TG L+EAA NLF YM+ D SGA +IA IP Sbjct: 241 GEALLAFGNRRAAGWQRAAAFRNLSDTGDLREAATNLFAYMQDLDRSGARTIAVEPIPFD 300 Query: 306 GLGIAINNRLERAAAPRNQSQ 326 GLG AIN+RL RAAAPR+ +Q Sbjct: 301 GLGEAINDRLSRAAAPRDNTQ 321 >gi|49475221|ref|YP_033262.1| hypothetical protein BH04240 [Bartonella henselae str. Houston-1] gi|49238026|emb|CAF27233.1| hypothetical protein BH04240 [Bartonella henselae str. Houston-1] Length = 320 Score = 289 bits (740), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 148/317 (46%), Positives = 214/317 (67%), Gaps = 3/317 (0%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 +S ++++A L+ G +A+PTETVYGLA D+ N AI ++ K+RP NPLI HVS I Sbjct: 7 NSASVKEAVALLEQGRLVALPTETVYGLAGDATNGNAIASIFLTKRRPKFNPLIAHVSSI 66 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 M +++ +D LS HL ++FWPGPLT VL L + +IHPL+T+ L T R P F ++ Sbjct: 67 FMAERYVEIDFLSRHLMEVFWPGPLTFVLPLKAQHNIHPLTTSGLNTLAVRFPDSFFAEV 126 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ +G PLA PSAN+SG +S T+ + + +S+ + +PLI+DGG SKIGLESTI+ V ++ Sbjct: 127 VKCFGRPLAAPSANQSGHLSPTSAEAVW-ASLGESVPLILDGGFSKIGLESTIIKV-SDE 184 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 + +LRPGG+ E ++ L+ +D+ + ++PGMLKSHYAP + VRL V E Sbjct: 185 NIYLLRPGGIAAEDIEEVAGKSLKR-IDQRAAIEAPGMLKSHYAPNAAVRLNVQKVEHGE 243 Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307 AL+ FG I +ENA+ LNLS++G+L+EAAF+LF YM+ D SIA IP++GL Sbjct: 244 ALLAFGIKRIMGVENAVSVLNLSESGQLEEAAFHLFQYMRQLDSLKVRSIAVEPIPSYGL 303 Query: 308 GIAINNRLERAAAPRNQ 324 G AIN+RL RAAAP+ + Sbjct: 304 GEAINDRLIRAAAPKGK 320 >gi|319898590|ref|YP_004158683.1| hypothetical protein BARCL_0418 [Bartonella clarridgeiae 73] gi|319402554|emb|CBI76099.1| conserved protein of unknown function [Bartonella clarridgeiae 73] Length = 320 Score = 287 bits (735), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 153/317 (48%), Positives = 208/317 (65%), Gaps = 3/317 (0%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 +S A+++A L G +A+PTETVYGLA D+ + A+ ++ K RP NPLI HVSDI Sbjct: 7 NSEAIKQAVTILQQGKLVALPTETVYGLAGDATDGKAVASIFSTKGRPPFNPLIVHVSDI 66 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 M + + +D LS L + FWPGPLT+VL L +IHPL+TA L T R P G ++ Sbjct: 67 VMAECYVEIDLLSRRLMEAFWPGPLTVVLPLKVHHNIHPLTTAGLNTLAVRFPRGGFAEI 126 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + +G PLA PSAN+SG++S T+ + +S+ +PLIIDGG SKIGLESTI+ + C++ Sbjct: 127 VRHFGRPLAAPSANQSGKLSPTSATSVF-TSLGTSVPLIIDGGDSKIGLESTIIKI-CDE 184 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 V ILRPGGL IE ++R ++ +D+ ++PGML+SHYAP + VRL V E Sbjct: 185 NVYILRPGGLAIEEIERVAKKSVKR-LDQQVAIEAPGMLRSHYAPDTSVRLNVKRVESGE 243 Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307 AL+ FG I+ ENAI LNLS+TG+L+EAAF+LF YM+ D IA IP +GL Sbjct: 244 ALLAFGPKRIEGFENAIAVLNLSETGRLEEAAFHLFQYMQELDSLKVKCIAVEPIPFYGL 303 Query: 308 GIAINNRLERAAAPRNQ 324 G AIN+RL RAAAP+ + Sbjct: 304 GEAINDRLTRAAAPKGK 320 >gi|227821231|ref|YP_002825201.1| hypothetical protein NGR_c06550 [Sinorhizobium fredii NGR234] gi|227340230|gb|ACP24448.1| hypothetical protein NGR_c06550 [Sinorhizobium fredii NGR234] Length = 337 Score = 286 bits (732), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 152/319 (47%), Positives = 205/319 (64%), Gaps = 16/319 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 + A E L G IA+PTETVYGLA D+ N A+ ++++IK+RP NPLICH SD+ MV Sbjct: 12 GITSAVEALGRGDVIAVPTETVYGLAADATNEAAVSQIFDIKRRPGFNPLICHCSDLEMV 71 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130 + A++DP+SL LA+ FWPGP+TLVL+ + + ++TA L T R+P GF+ LI + Sbjct: 72 SEFATLDPVSLRLAERFWPGPMTLVLN-SNPGRLPSVTTAGLTTVAIRIPMGFSNGLIRS 130 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 YG PLA PSAN SG++S T H+ S +PLI+DGG +KIG+ESTI+ V+ E + Sbjct: 131 YGGPLAAPSANISGRVSATTAAHV-ESEFGDGVPLILDGGPTKIGVESTILRVR-ENGIE 188 Query: 191 ILRPGGLEIETLKRAISVELEYCVDETSTPQ------SPGMLKSHYAPRSQVRLRAIHVN 244 +LRPGGL IE ++ A +++ S P +PGML SHYAPR+ VRL A V Sbjct: 189 LLRPGGLPIELVEHAAGLQV-------SAPNLFRKVLAPGMLTSHYAPRAMVRLNATGVG 241 Query: 245 PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPN 304 P E L++FG+ + NLS G L+E A L+ +K ADD+GA SIA IP+ Sbjct: 242 PGETLLKFGDAIVPGEGACARVFNLSPEGSLEEFAAKLYATLKEADDAGAESIAIVPIPD 301 Query: 305 HGLGIAINNRLERAAAPRN 323 GLG+AIN+RL RAAAPR Sbjct: 302 EGLGLAINDRLRRAAAPRT 320 >gi|240850071|ref|YP_002971464.1| translation factor, Sua5/YciO/YrdC family [Bartonella grahamii as4aup] gi|240267194|gb|ACS50782.1| translation factor, Sua5/YciO/YrdC family [Bartonella grahamii as4aup] Length = 320 Score = 285 bits (729), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 146/317 (46%), Positives = 212/317 (66%), Gaps = 3/317 (0%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 +S ++R+A L+ G +A+PTETVYGLA D+ N AI ++ K RP +NPLI HVS I Sbjct: 7 NSASIREAIALLEQGKLVALPTETVYGLAGDATNGRAISSIFSTKGRPQINPLIAHVSGI 66 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 M +++ +D LS L + FWPGPLTLVL L +IHPL+T+ L T R P ++ Sbjct: 67 EMAERYVKIDFLSRQLMEEFWPGPLTLVLPLKEQHNIHPLTTSGLNTLAVRFPDSLFAEV 126 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ +G PLA PSAN+SG++S T+ + + +S+ + +PLI+DGG +KIGLESTI+ + C++ Sbjct: 127 VQHFGRPLAAPSANQSGRLSPTSAEAVF-ASLGESVPLILDGGPAKIGLESTIIKI-CDE 184 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 + +LRPGGL + ++ + L+ +D+ + ++PGMLKSHYAP + +RL V E Sbjct: 185 NIYLLRPGGLAADKIEEVVGKSLKR-IDQRAAIEAPGMLKSHYAPNATIRLNVEKVENGE 243 Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307 AL+ FG+ + ENA+ LNLS+ GKL+EAAF+LF YMK D IA IP++GL Sbjct: 244 ALLAFGSKRVMGAENAVSILNLSEDGKLEEAAFHLFQYMKELDSFKVRCIAVEPIPSYGL 303 Query: 308 GIAINNRLERAAAPRNQ 324 G AIN+RL RAAAP+ + Sbjct: 304 GEAINDRLIRAAAPKEK 320 >gi|121602316|ref|YP_988708.1| Sua5/YciO/YrdC family protein [Bartonella bacilliformis KC583] gi|120614493|gb|ABM45094.1| Sua5/YciO/YrdC family protein [Bartonella bacilliformis KC583] Length = 320 Score = 285 bits (728), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 153/317 (48%), Positives = 209/317 (65%), Gaps = 3/317 (0%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 +S+++++A E L G + +PTETVYGLA D+ N A+ ++ IK RP NPLI HVS I Sbjct: 7 NSHSIKEAVEILKKGQLVVLPTETVYGLAGDATNGKAVASIFAIKGRPQFNPLIAHVSSI 66 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 M + + +D LS L + FWPGPLTLVL L +IHPL+TA L T R P G ++ Sbjct: 67 KMAECYVEIDCLSRRLMEAFWPGPLTLVLPLKPHHNIHPLTTAGLNTLAVRFPDGGFAEI 126 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ +G PLA PSAN+SG +S T+ + S+ +++ LIID G +KIGLESTIV V C+ Sbjct: 127 VQCFGRPLAAPSANQSGYLSPTSAASVF-DSLGEKVSLIIDNGPAKIGLESTIVKV-CDG 184 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 + +LRPGG+ E +++ + L+ +D+ + ++PGMLKSHYAP S VRL A V E Sbjct: 185 NIYLLRPGGIIAEDIEKVVEKSLKR-MDQCAAIEAPGMLKSHYAPNSLVRLNAQTVENGE 243 Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307 AL+ FG I +ENAI LNLS++G+L+EAAFN F YMK D A IA IP +GL Sbjct: 244 ALLAFGTQRIAGVENAIYVLNLSESGQLEEAAFNFFQYMKQLDLFKARCIAVEPIPFYGL 303 Query: 308 GIAINNRLERAAAPRNQ 324 G AIN+RL RAAAP+ + Sbjct: 304 GEAINDRLIRAAAPKGE 320 >gi|319406928|emb|CBI80565.1| conserved hypothetical protein [Bartonella sp. 1-1C] Length = 320 Score = 282 bits (721), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 151/324 (46%), Positives = 212/324 (65%), Gaps = 4/324 (1%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I+ ++ A+ +A L G +A+PTETVYGLA D+ N A+ ++ K RP NPL Sbjct: 1 MAILPFNNA-AINQAVAILQQGQLVALPTETVYGLAGDATNGKAVASIFSTKARPLFNPL 59 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 I HVSDI M + + +D LS L + FWPGPLT+VL L + +IHPL+TA L T R P Sbjct: 60 IVHVSDIVMAECYVKIDFLSRRLMEAFWPGPLTVVLPLKAHHNIHPLTTAGLNTLAIRSP 119 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 G ++I +G PLA PSAN+SG++S T+ + +S+ +PLIIDGG SKIGLESTI Sbjct: 120 KGGFVEVIRHFGRPLAAPSANQSGKLSPTSALSVF-TSLGTSVPLIIDGGDSKIGLESTI 178 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 + + C++ + +LRPGGL IE +++ ++ +D+ + ++PGMLKSHYAP + +RL Sbjct: 179 IKI-CDENIYLLRPGGLAIEEIEKVAKKSVKR-LDQKTAIEAPGMLKSHYAPNTSMRLNV 236 Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300 V EAL+ FG I+ +ENA+ LNLS +G+L+EAAF+LF YM+ D IA Sbjct: 237 KKVKSGEALLAFGPKRIEGVENAVAVLNLSTSGRLEEAAFHLFQYMQQLDSLKVKCIAVE 296 Query: 301 SIPNHGLGIAINNRLERAAAPRNQ 324 IP +GLG AIN+RL RAAAP+ + Sbjct: 297 PIPFYGLGEAINDRLIRAAAPKGK 320 >gi|319403916|emb|CBI77504.1| conserved hypothetical protein [Bartonella rochalimae ATCC BAA-1498] Length = 320 Score = 280 bits (716), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 149/324 (45%), Positives = 210/324 (64%), Gaps = 4/324 (1%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I+ ++ A+ +A G +A+PTETVYGLA D+ N A+ ++ K RP NPL Sbjct: 1 MTILPFNNA-AINQAVAIFQQGQLVALPTETVYGLAGDATNGKAVASIFSTKARPLFNPL 59 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 I HVSDI M + + +D LS L + FWPGPLT+VL L + +IHPL+TA L T R P Sbjct: 60 IVHVSDIVMAECYVKIDLLSRRLMEAFWPGPLTVVLPLKAHHNIHPLTTAGLNTLAIRSP 119 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 G ++I +G PLA PSAN+SG++S T+ + +S+ +PLIIDGG SKIG+ESTI Sbjct: 120 KGGFAEVIRHFGRPLAAPSANQSGKLSPTSALSVF-TSLGTSVPLIIDGGASKIGIESTI 178 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 + + C++ + +LRPGGL IE +++ ++ +T+ ++PGMLKSHYAP + +RL Sbjct: 179 IKI-CDENIYLLRPGGLAIEEIEKVAKKSVKRLEQQTAI-EAPGMLKSHYAPNTSMRLNV 236 Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300 V EAL+ FG I+ +ENA+ LNLS +G+L+EAAF+LF YM+ D IA Sbjct: 237 KKVKSGEALLAFGPKRIEGVENAVAVLNLSTSGRLEEAAFHLFQYMQQLDSLEVKCIAVE 296 Query: 301 SIPNHGLGIAINNRLERAAAPRNQ 324 IP +GLG AIN+RL RAAAP+ + Sbjct: 297 PIPFYGLGEAINDRLIRAAAPKGK 320 >gi|319405355|emb|CBI78972.1| conserved hypothetical protein [Bartonella sp. AR 15-3] Length = 320 Score = 278 bits (712), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 149/317 (47%), Positives = 207/317 (65%), Gaps = 3/317 (0%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 +S A+ +A L G +A+PTETVYGLA D+ N A+ ++ K RP NPLI HVSDI Sbjct: 7 NSAAINQAVTILQQGQLVALPTETVYGLAGDATNGKAVASIFSTKGRPFFNPLIVHVSDI 66 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 M + + +D LS L + FWPGPLT+VL L + +IHPL+TA L T R P G ++ Sbjct: 67 VMAECYVKIDFLSRRLMEAFWPGPLTVVLPLKAHHNIHPLTTAGLNTLAVRFPKGGFAEV 126 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I +G PLA PSAN+SG++S T+ + S+ +PLIIDGG SKIGLESTI+ + C++ Sbjct: 127 IRHFGRPLAAPSANQSGKLSPTSAISVF-KSLGTLVPLIIDGGASKIGLESTIIKI-CDE 184 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 V +LRPGGL IE + + ++ +D+ + ++PGMLKSHYAP + +RL V E Sbjct: 185 NVYLLRPGGLAIEEIAKVAKKPVKR-LDQQAAIEAPGMLKSHYAPNTSMRLNVKKVESGE 243 Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307 AL+ FG ++ +ENA+ LNLS++G+L+EAAF+LF YM+ D IA IP +GL Sbjct: 244 ALLAFGPKRVEGVENAVAVLNLSESGRLEEAAFHLFQYMQQLDLPKVKCIAVEPIPFYGL 303 Query: 308 GIAINNRLERAAAPRNQ 324 G AIN+RL RAAA + + Sbjct: 304 GEAINDRLIRAAAAKGK 320 >gi|49473987|ref|YP_032029.1| hypothetical protein BQ03430 [Bartonella quintana str. Toulouse] gi|49239490|emb|CAF25843.1| hypothetical protein BQ03430 [Bartonella quintana str. Toulouse] Length = 320 Score = 276 bits (707), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 150/324 (46%), Positives = 211/324 (65%), Gaps = 4/324 (1%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I+ + +++ ++KA L+ G +A+PTETVYGLA D+ N A+ ++ K+RP NPL Sbjct: 1 MTILPLNNAS-IKKAVALLEQGKLVALPTETVYGLAGDATNGRAVASIFFTKRRPKFNPL 59 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 I HVS I M + + +D LS L ++FWPGPLTLVL L + +IHPL+T+ L T R P Sbjct: 60 IAHVSGIVMAEHYVEIDFLSRRLMEVFWPGPLTLVLPLKAHHNIHPLTTSGLNTLAIRFP 119 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 +++E +G PLA PSAN+SG IS T+ + + + + +PLI+DGG KIGLESTI Sbjct: 120 DSRFAEVVERFGRPLAAPSANQSGCISPTSAGAVF-AFLGESVPLILDGGACKIGLESTI 178 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 V V C + + +LRPGGL E ++ L+ +D+ + ++PGMLKSHYAP + VRL Sbjct: 179 VKV-CGESIYLLRPGGLAAEEIEAVAGKSLKR-LDQQAAIEAPGMLKSHYAPNAMVRLNV 236 Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300 V EAL+ FG I +ENA+ LNLS++G+L+EAA +LF YMK D IA Sbjct: 237 QKVKHGEALLAFGRKRIMGVENAVSVLNLSESGQLEEAASHLFEYMKQLDSLKVKYIAVE 296 Query: 301 SIPNHGLGIAINNRLERAAAPRNQ 324 IP++GLG AIN+RL RAAAP+ + Sbjct: 297 PIPSYGLGEAINDRLIRAAAPKEK 320 >gi|13476186|ref|NP_107756.1| hypothetical protein mlr7439 [Mesorhizobium loti MAFF303099] gi|14026946|dbj|BAB53542.1| mlr7439 [Mesorhizobium loti MAFF303099] Length = 327 Score = 276 bits (706), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 152/325 (46%), Positives = 201/325 (61%), Gaps = 6/325 (1%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +I+++ + AL +A L G +AIPTETVYGLA D+ N + R++E K RP NPLI Sbjct: 6 EILAVGE--ALERALALLGDGDVVAIPTETVYGLAGDATNGIGVARIFEAKGRPRFNPLI 63 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 HV+D++M ++ A DPLS LA+ FWPGPLTLVL IHPL TA L T R+P Sbjct: 64 AHVADMAMAERIAVFDPLSKKLAQAFWPGPLTLVLPQRPGNGIHPLVTAGLDTIALRMPR 123 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 GF LI G PLA PSAN SG+IS T + + ++ + I L++DGG + +GLESTIV Sbjct: 124 GFGGDLIAKLGRPLAAPSANSSGRISATTAQAV-AADLGARIKLVVDGGATPVGLESTIV 182 Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241 + VR+LRP I + ++ +E + ++PGML SHYAP + +RL A Sbjct: 183 KAEG-AGVRLLRP--GGIAAEEIEAAIGMELLRGGGAGIEAPGMLASHYAPGAAMRLNAG 239 Query: 242 HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSS 301 V EAL+ FG + NA LNLS +G L+EAA NLF YM+ D SGA +IA + Sbjct: 240 MVGEGEALLGFGGNRAEGWRNATAFLNLSASGDLREAASNLFAYMQELDRSGARTIAVET 299 Query: 302 IPNHGLGIAINNRLERAAAPRNQSQ 326 IP GLG AIN+RL RAAAPR+ +Q Sbjct: 300 IPFDGLGEAINDRLARAAAPRDNAQ 324 >gi|319784740|ref|YP_004144216.1| Sua5/YciO/YrdC/YwlC family protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170628|gb|ADV14166.1| Sua5/YciO/YrdC/YwlC family protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 355 Score = 274 bits (700), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 156/321 (48%), Positives = 204/321 (63%), Gaps = 4/321 (1%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + AL +A L G +AIPTETVYGLA D+ N + R++E K RP NPLI HV+ Sbjct: 36 LGSGEALERALALLREGDVVAIPTETVYGLAGDATNGIGVARIFEAKGRPRFNPLIAHVA 95 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125 D++M ++ A DPLS LA+ FWPGPLTLVL IHPL TA L T R+P GF Sbjct: 96 DMAMAERLALFDPLSKKLARAFWPGPLTLVLPQRPGNGIHPLVTAGLDTIALRMPRGFGG 155 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LI G PLA PSAN SG+IS T + + ++ + I L++DGG + +GLESTI+ + Sbjct: 156 DLIARLGRPLAAPSANSSGRISATTAQAV-AADLGARIKLVVDGGATPVGLESTILKAEG 214 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245 E ++R+LRPGG+ E ++ AI +EL T++ ++PGML SHYAP + +RL A V Sbjct: 215 E-RMRLLRPGGIAAEEIEAAIGMEL--LRGGTASIEAPGMLASHYAPGAAMRLNAGTVGE 271 Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305 EAL+ FG+ A LNLS+TG L+EAA NLF YM+ D SGA +IA IP Sbjct: 272 GEALLGFGSQRADGWRRAEAFLNLSETGDLREAASNLFAYMQALDRSGARTIAVEPIPCD 331 Query: 306 GLGIAINNRLERAAAPRNQSQ 326 GLG AIN+RL RAAAPR+ +Q Sbjct: 332 GLGEAINDRLSRAAAPRDITQ 352 >gi|153007869|ref|YP_001369084.1| Sua5/YciO/YrdC/YwlC family protein [Ochrobactrum anthropi ATCC 49188] gi|151559757|gb|ABS13255.1| Sua5/YciO/YrdC/YwlC family protein [Ochrobactrum anthropi ATCC 49188] Length = 332 Score = 273 bits (698), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 148/319 (46%), Positives = 201/319 (63%), Gaps = 7/319 (2%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D A+++A E L G +AIPTETVYGLA D+ N + ++ K RP NPLI HVS I Sbjct: 17 DDEAVQRAVEVLRRGGLVAIPTETVYGLAADAANGEGVAGIFAAKGRPQFNPLIAHVSGI 76 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD----IHPLSTANLKTACFRVPCGF 123 +M +++ + D LS LA++FWPGPLT+VL L D IHPL TA L T R+P G Sbjct: 77 AMAERYVTFDALSRKLAEMFWPGPLTIVLPLKDRQDTDRPIHPLVTAGLSTLAIRMPLGR 136 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + +IE P+A PSAN SG+IS T+ + + + + ++ LI+D G +G+ESTIV V Sbjct: 137 VRDIIEGLDSPVAAPSANTSGRISPTSARAV-ADDLGNKLDLILDAGPCGVGVESTIVKV 195 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 KV +LRPGGL E ++ I +L D TS Q+PGM+ SHYAP + +RL V Sbjct: 196 DG-NKVHLLRPGGLAAEEIEAVIGEKLVRA-DHTSAIQAPGMMASHYAPDAAMRLGVGSV 253 Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303 P EAL+ FG + + A + +NLS G L+EAA NLF++M+ D +GA++IA IP Sbjct: 254 QPGEALLAFGPQRVAGADTAKVIMNLSADGNLREAAANLFDFMRRLDATGATTIAVEPIP 313 Query: 304 NHGLGIAINNRLERAAAPR 322 GLG AIN+RL+RAAAPR Sbjct: 314 FEGLGEAINDRLKRAAAPR 332 >gi|163867863|ref|YP_001609067.1| hypothetical protein Btr_0635 [Bartonella tribocorum CIP 105476] gi|161017514|emb|CAK01072.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476] Length = 320 Score = 272 bits (696), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 143/317 (45%), Positives = 207/317 (65%), Gaps = 3/317 (0%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 +S ++++A L+ G +A+PTETVYGLA D+ N A+ ++ KKRP NPLI HV+ I Sbjct: 7 NSVSIKEAITLLEQGRLVALPTETVYGLAGDATNGRALSSIFSTKKRPQFNPLIAHVNGI 66 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 M +++ +D LS L ++FWPGPLTLVL L +IHPL+TA L T R P ++ Sbjct: 67 EMAERYVEIDFLSRRLMEVFWPGPLTLVLPLKKQHNIHPLTTAGLDTLAIRFPDSRFAEI 126 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ G PLA PSAN+SG++S T+ + + +S+ + +PLI+DGG +KIGLESTI+ + C + Sbjct: 127 VQCLGRPLAAPSANQSGRLSPTSAEAVF-TSLGESVPLILDGGPAKIGLESTIIKI-CGE 184 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 ++ +LRPGGL + ++ + L+ +D+ + ++PGMLK+HYAP + +RL V E Sbjct: 185 RIYLLRPGGLAADKIEEVVGRSLKR-IDQRAAIEAPGMLKTHYAPNAAIRLNVEKVENGE 243 Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307 AL+ FG + ENA LNLS+ G L+EAA +LF YMK D IA IP+ GL Sbjct: 244 ALLAFGPKRVMGAENAAFILNLSEGGTLEEAASHLFQYMKELDSFKVRCIAVEPIPSWGL 303 Query: 308 GIAINNRLERAAAPRNQ 324 G AIN+RL RAAAPR + Sbjct: 304 GEAINDRLIRAAAPREK 320 >gi|239831281|ref|ZP_04679610.1| Sua5/YciO/YrdC/YwlC family protein [Ochrobactrum intermedium LMG 3301] gi|239823548|gb|EEQ95116.1| Sua5/YciO/YrdC/YwlC family protein [Ochrobactrum intermedium LMG 3301] Length = 355 Score = 270 bits (689), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 148/319 (46%), Positives = 197/319 (61%), Gaps = 7/319 (2%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D A+ +A E L G +AIPTETVYGLA D+ N + ++ K RP NPLI HVS I Sbjct: 40 DDEAVLRAVEVLRRGGLVAIPTETVYGLAADASNGEGVAGIFAAKGRPQFNPLIAHVSGI 99 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD----IHPLSTANLKTACFRVPCGF 123 +M +++ + D LS LA++FWPGPLT+VL L D IHPL TA L+T R+P G Sbjct: 100 AMAERYVTFDALSRKLAEMFWPGPLTIVLPLKDRQDADRPIHPLVTAGLQTLAIRMPLGR 159 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + +IE P+A PSAN SG+IS T+ + + + + LI+D G +G+ESTIV V Sbjct: 160 VRDIIEGLDSPVAAPSANTSGRISPTSASAV-AGDLGNRLDLILDAGPCGVGVESTIVKV 218 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 KV +LRPGGL E ++ I +L D TS Q+PGM+ SHYAP + +RL V Sbjct: 219 DG-NKVHLLRPGGLAAEEIEAVIGEKLVRA-DHTSAIQAPGMMASHYAPDAAMRLDVGSV 276 Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303 P E L+ FG + E A +NLS G L+EAA NLF++M+ D +GA++IA IP Sbjct: 277 QPGEVLLAFGPQRVAGAEGAATVMNLSANGNLREAAANLFDFMRRLDATGAATIAVEPIP 336 Query: 304 NHGLGIAINNRLERAAAPR 322 GLG AIN+RL+RAAAPR Sbjct: 337 FDGLGEAINDRLKRAAAPR 355 >gi|256159112|ref|ZP_05456933.1| Sua5/YciO/YrdC/YwlC protein family [Brucella ceti M490/95/1] gi|256254451|ref|ZP_05459987.1| Sua5/YciO/YrdC/YwlC protein family [Brucella ceti B1/94] gi|261221622|ref|ZP_05935903.1| Sua5/YciO/YrdC/YwlC family protein [Brucella ceti B1/94] gi|265997584|ref|ZP_06110141.1| Sua5/YciO/YrdC/YwlC family protein [Brucella ceti M490/95/1] gi|260920206|gb|EEX86859.1| Sua5/YciO/YrdC/YwlC family protein [Brucella ceti B1/94] gi|262552052|gb|EEZ08042.1| Sua5/YciO/YrdC/YwlC family protein [Brucella ceti M490/95/1] Length = 323 Score = 263 bits (671), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 144/319 (45%), Positives = 196/319 (61%), Gaps = 7/319 (2%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D A+ +A E L G +AIPTETVYGLA D+ N + ++ K RP NPLI HV I Sbjct: 8 DDGAVLRAVEVLRRGGLVAIPTETVYGLAADAANGEGVAGIFAAKGRPQFNPLIAHVDGI 67 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD----IHPLSTANLKTACFRVPCGF 123 +M ++ + DP+S LA+ FWPGPLT+VL L D IHPL TA L T R+P G Sbjct: 68 AMAGRYVAFDPVSRRLAEAFWPGPLTIVLPLKERQDTERPIHPLVTAGLSTLAVRMPHGR 127 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + +I P+A PSAN SG+IS T+ + + + I LI+D G +G+ESTIV V Sbjct: 128 VRDVITALDSPVAAPSANTSGRISPTSAAAV-AGDLGGRIDLILDAGPCGVGVESTIVKV 186 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 ++ V +LRPGGL E ++ + +L + + Q+PGM++SHYAP + +RL V Sbjct: 187 DGDQ-VHLLRPGGLAAEEIEAFLGQKLRRA-EHAAAIQAPGMMESHYAPDASMRLAVSDV 244 Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303 P EAL+ FG + A + LNLS TG L+EAA NLF++M+ D +GA++IA IP Sbjct: 245 KPGEALLAFGPHRVAESNRAAVVLNLSATGDLREAAANLFDFMRRLDATGAATIAVEPIP 304 Query: 304 NHGLGIAINNRLERAAAPR 322 GLG AIN+RL+RAAAPR Sbjct: 305 LDGLGEAINDRLKRAAAPR 323 >gi|17987811|ref|NP_540445.1| SUA5 protein [Brucella melitensis bv. 1 str. 16M] gi|225851941|ref|YP_002732174.1| Sua5/YciO/YrdC/YwlC family protein [Brucella melitensis ATCC 23457] gi|256044125|ref|ZP_05447032.1| Sua5/YciO/YrdC/YwlC family protein [Brucella melitensis bv. 1 str. Rev.1] gi|256264548|ref|ZP_05467080.1| Sua5/YciO/YrdC/YwlC protein [Brucella melitensis bv. 2 str. 63/9] gi|260563482|ref|ZP_05833968.1| Sua5/YciO/YrdC/YwlC protein family [Brucella melitensis bv. 1 str. 16M] gi|265990535|ref|ZP_06103092.1| Sua5/YciO/YrdC/YwlC family protein [Brucella melitensis bv. 1 str. Rev.1] gi|17983537|gb|AAL52709.1| sua5 protein [Brucella melitensis bv. 1 str. 16M] gi|225640306|gb|ACO00220.1| Sua5/YciO/YrdC/YwlC family protein [Brucella melitensis ATCC 23457] gi|260153498|gb|EEW88590.1| Sua5/YciO/YrdC/YwlC protein family [Brucella melitensis bv. 1 str. 16M] gi|263001319|gb|EEZ13894.1| Sua5/YciO/YrdC/YwlC family protein [Brucella melitensis bv. 1 str. Rev.1] gi|263094882|gb|EEZ18620.1| Sua5/YciO/YrdC/YwlC protein [Brucella melitensis bv. 2 str. 63/9] gi|326408439|gb|ADZ65504.1| Sua5/YciO/YrdC/YwlC family protein [Brucella melitensis M28] gi|326538155|gb|ADZ86370.1| Sua5/YciO/YrdC/YwlC family protein [Brucella melitensis M5-90] Length = 323 Score = 262 bits (670), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 144/319 (45%), Positives = 197/319 (61%), Gaps = 7/319 (2%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D A+ +A E L G +AIPTETVYGLA D+ N + ++ K RP NPLI HV I Sbjct: 8 DDGAVLRAVEVLRRGGLVAIPTETVYGLAADAANGEGVAGIFAAKGRPQFNPLIAHVDGI 67 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD----IHPLSTANLKTACFRVPCGF 123 +M ++ + DP+S LA+ FWPGPLT+VL L D IHPL TA L T R+P G Sbjct: 68 AMAGRYVAFDPVSRRLAEAFWPGPLTIVLPLKERQDTERPIHPLVTAGLSTLAVRMPHGR 127 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + +I P+A PSAN SG+IS T+ + + + +I LI+D G +G+ESTIV V Sbjct: 128 VRDVITALDSPVAAPSANTSGRISPTSAAAV-AGDLGGQIDLILDAGPCGVGVESTIVKV 186 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 ++ V +LRPGGL E ++ + +L + ++ Q+PGM++SHYAP + +RL V Sbjct: 187 DGDQ-VHLLRPGGLAAEEIEAFLGQKLRRA-EHSAAIQAPGMMESHYAPDASMRLAVSDV 244 Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303 P EAL+ FG + A LNLS TG L+EAA NLF++M+ D +GA++IA IP Sbjct: 245 KPGEALLAFGPHRVAESNRAAAVLNLSATGDLREAAANLFDFMRRLDATGAATIAVEPIP 304 Query: 304 NHGLGIAINNRLERAAAPR 322 GLG AIN+RL+RAAAPR Sbjct: 305 LDGLGEAINDRLKRAAAPR 323 >gi|306842310|ref|ZP_07474970.1| Sua5/YciO/YrdC/YwlC family protein [Brucella sp. BO2] gi|306287567|gb|EFM59023.1| Sua5/YciO/YrdC/YwlC family protein [Brucella sp. BO2] Length = 323 Score = 261 bits (668), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 145/319 (45%), Positives = 195/319 (61%), Gaps = 7/319 (2%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D A+ +A E L G +AIPTETVYGLA D+ N + ++ K RP NPLI HV I Sbjct: 8 DDGAVLRAVEVLRRGGLVAIPTETVYGLAADAANGEGVAGIFAAKGRPQFNPLIAHVDGI 67 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD----IHPLSTANLKTACFRVPCGF 123 +M ++ + DP+S LA+ FWPGPLT+VL L D IHPL TA L T R+P G Sbjct: 68 AMAGRYVAFDPVSRRLAEAFWPGPLTIVLPLKERQDTDRPIHPLVTAGLSTLAVRMPHGR 127 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + +I P+A PSAN SG+IS T+ + + + I LI+D G IG+ESTIV V Sbjct: 128 VRDVITALDSPVAAPSANTSGRISPTSAAAV-AGDLGGRIDLILDAGPCGIGVESTIVKV 186 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 ++ V +LRPGGL E ++ + +L + + Q+PGM++SHYAP + +RL V Sbjct: 187 DGDQ-VHLLRPGGLAAEEIEAFLGQKLRRA-EHAAAIQAPGMMESHYAPDASMRLAVSDV 244 Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303 P EAL+ FG + A LNLS TG L+EAA NLF++M+ D +GA++IA IP Sbjct: 245 KPGEALLAFGPHRVAESNRAAAVLNLSATGDLREAAANLFDFMRRLDATGAATIAVEPIP 304 Query: 304 NHGLGIAINNRLERAAAPR 322 GLG AIN+RL+RAAAPR Sbjct: 305 LDGLGEAINDRLKRAAAPR 323 >gi|306845031|ref|ZP_07477612.1| Sua5/YciO/YrdC/YwlC family protein [Brucella sp. BO1] gi|306274663|gb|EFM56452.1| Sua5/YciO/YrdC/YwlC family protein [Brucella sp. BO1] Length = 323 Score = 261 bits (668), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 144/319 (45%), Positives = 196/319 (61%), Gaps = 7/319 (2%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D A+ +A E L G +AIPTETVYGLA D+ N + ++ K RP NPLI HV I Sbjct: 8 DDGAVLRAVEVLRRGGLVAIPTETVYGLAADAANGEGVAGIFAAKGRPQFNPLIAHVDGI 67 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD----IHPLSTANLKTACFRVPCGF 123 +M ++ + DP+S LA+ FWPGPLT+VL L D IHPL TA L T R+P G Sbjct: 68 AMAGRYVAFDPVSRRLAEAFWPGPLTIVLPLKERQDTDRPIHPLVTAGLSTLAVRMPHGR 127 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + +I P+A PSAN SG+IS T+ + + + I LI+D G +G+ESTIV V Sbjct: 128 VRDVITALDSPVAAPSANTSGRISPTSAAAV-AGDLGGRIDLILDAGPCDVGVESTIVKV 186 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 ++ V +LRPGGL E ++ + +L + + Q+PGM++SHYAP + +RL +V Sbjct: 187 DGDQ-VHLLRPGGLAAEEIEAFLGQKLRRA-EHAAAIQAPGMMESHYAPDASMRLAVSNV 244 Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303 P EAL+ FG + A LNLS TG L+EAA NLF++M+ D +GA++IA IP Sbjct: 245 KPGEALLAFGPHRVAESNRAAAVLNLSATGDLREAAANLFDFMRRLDATGAATIAVEPIP 304 Query: 304 NHGLGIAINNRLERAAAPR 322 GLG AIN+RL+RAAAPR Sbjct: 305 LDGLGEAINDRLKRAAAPR 323 >gi|254718586|ref|ZP_05180397.1| Sua5/YciO/YrdC/YwlC protein family [Brucella sp. 83/13] gi|265983561|ref|ZP_06096296.1| Sua5/YciO/YrdC/YwlC family protein [Brucella sp. 83/13] gi|306839897|ref|ZP_07472695.1| Sua5/YciO/YrdC/YwlC family protein [Brucella sp. NF 2653] gi|264662153|gb|EEZ32414.1| Sua5/YciO/YrdC/YwlC family protein [Brucella sp. 83/13] gi|306405083|gb|EFM61364.1| Sua5/YciO/YrdC/YwlC family protein [Brucella sp. NF 2653] Length = 323 Score = 261 bits (667), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 144/319 (45%), Positives = 195/319 (61%), Gaps = 7/319 (2%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D A+ +A E L G +AIPTETVYGLA D+ N + ++ K RP NPLI HV I Sbjct: 8 DDGAVLRAVEVLRRGGLVAIPTETVYGLAADAANGEGVAGIFAAKGRPQFNPLIAHVDGI 67 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD----IHPLSTANLKTACFRVPCGF 123 +M ++ + DP+S LA+ FWPGPLT+VL L D IHPL TA L T R+P G Sbjct: 68 AMAGRYVAFDPVSRRLAEAFWPGPLTIVLPLKERQDTERPIHPLVTAGLSTLAVRMPHGR 127 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + +I P+A PSAN SG+IS T+ + + + I LI+D G +G+ESTIV V Sbjct: 128 VRDVITALDSPVAAPSANTSGRISPTSAASV-AGDLGGRIDLILDAGPCGVGVESTIVKV 186 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 ++ V +LRPGGL E ++ + +L + + Q+PGM++SHYAP + +RL V Sbjct: 187 DGDQ-VHLLRPGGLAAEEIEAFLGQKLRRA-EHAAAIQAPGMMESHYAPDASMRLAVSDV 244 Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303 P EAL+ FG + A LNLS TG L+EAA NLF++M+ D +GA++IA IP Sbjct: 245 KPGEALLAFGPHRVAESNRAAAVLNLSATGDLREAAANLFDFMRRLDATGAATIAVEPIP 304 Query: 304 NHGLGIAINNRLERAAAPR 322 GLG AIN+RL+RAAAPR Sbjct: 305 LDGLGEAINDRLKRAAAPR 323 >gi|23501309|ref|NP_697436.1| Sua5/YciO/YrdC family protein [Brucella suis 1330] gi|62289392|ref|YP_221185.1| Sua5/YciO/YrdC family protein [Brucella abortus bv. 1 str. 9-941] gi|82699320|ref|YP_413894.1| Sua5/YciO/YrdC/YwlC family protein:SUA5 [Brucella melitensis biovar Abortus 2308] gi|161618380|ref|YP_001592267.1| Sua5/YciO/YrdC/YwlC family protein [Brucella canis ATCC 23365] gi|163842687|ref|YP_001627091.1| Sua5/YciO/YrdC/YwlC family protein [Brucella suis ATCC 23445] gi|189023644|ref|YP_001934412.1| Sua5/YciO/YrdC/YwlC protein family [Brucella abortus S19] gi|225626914|ref|ZP_03784953.1| Sua5/YciO/YrdC/YwlC family protein [Brucella ceti str. Cudo] gi|237814879|ref|ZP_04593877.1| Sua5/YciO/YrdC/YwlC family protein [Brucella abortus str. 2308 A] gi|254688706|ref|ZP_05151960.1| Sua5/YciO/YrdC/YwlC protein family [Brucella abortus bv. 6 str. 870] gi|254696834|ref|ZP_05158662.1| Sua5/YciO/YrdC/YwlC protein family [Brucella abortus bv. 2 str. 86/8/59] gi|254701213|ref|ZP_05163041.1| Sua5/YciO/YrdC/YwlC protein family [Brucella suis bv. 5 str. 513] gi|254703759|ref|ZP_05165587.1| Sua5/YciO/YrdC/YwlC protein family [Brucella suis bv. 3 str. 686] gi|254707862|ref|ZP_05169690.1| Sua5/YciO/YrdC/YwlC protein family [Brucella pinnipedialis M163/99/10] gi|254713027|ref|ZP_05174838.1| Sua5/YciO/YrdC/YwlC protein family [Brucella ceti M644/93/1] gi|254716618|ref|ZP_05178429.1| Sua5/YciO/YrdC/YwlC protein family [Brucella ceti M13/05/1] gi|254729739|ref|ZP_05188317.1| Sua5/YciO/YrdC/YwlC protein family [Brucella abortus bv. 4 str. 292] gi|256031048|ref|ZP_05444662.1| Sua5/YciO/YrdC/YwlC protein family [Brucella pinnipedialis M292/94/1] gi|256256953|ref|ZP_05462489.1| Sua5/YciO/YrdC/YwlC protein family [Brucella abortus bv. 9 str. C68] gi|260168179|ref|ZP_05754990.1| Sua5/YciO/YrdC/YwlC protein family [Brucella sp. F5/99] gi|260545856|ref|ZP_05821597.1| Sua5/YciO/YrdC/YwlC protein family [Brucella abortus NCTC 8038] gi|260566987|ref|ZP_05837457.1| Sua5/YciO/YrdC/YwlC protein family [Brucella suis bv. 4 str. 40] gi|260754183|ref|ZP_05866531.1| Sua5/YciO/YrdC/YwlC family protein [Brucella abortus bv. 6 str. 870] gi|260757403|ref|ZP_05869751.1| Sua5/YciO/YrdC/YwlC family protein [Brucella abortus bv. 4 str. 292] gi|260761228|ref|ZP_05873571.1| Sua5/YciO/YrdC/YwlC family protein [Brucella abortus bv. 2 str. 86/8/59] gi|260883208|ref|ZP_05894822.1| Sua5/YciO/YrdC/YwlC family protein [Brucella abortus bv. 9 str. C68] gi|261218418|ref|ZP_05932699.1| Sua5/YciO/YrdC/YwlC family protein [Brucella ceti M13/05/1] gi|261315352|ref|ZP_05954549.1| Sua5/YciO/YrdC/YwlC family protein [Brucella pinnipedialis M163/99/10] gi|261320733|ref|ZP_05959930.1| Sua5/YciO/YrdC/YwlC family protein [Brucella ceti M644/93/1] gi|261751751|ref|ZP_05995460.1| Sua5/YciO/YrdC/YwlC family protein [Brucella suis bv. 5 str. 513] gi|261754405|ref|ZP_05998114.1| Sua5/YciO/YrdC/YwlC family protein [Brucella suis bv. 3 str. 686] gi|261757638|ref|ZP_06001347.1| Sua5/YciO/YrdC/YwlC protein family [Brucella sp. F5/99] gi|265988119|ref|ZP_06100676.1| Sua5/YciO/YrdC/YwlC family protein [Brucella pinnipedialis M292/94/1] gi|294851786|ref|ZP_06792459.1| translation factor [Brucella sp. NVSL 07-0026] gi|297247805|ref|ZP_06931523.1| translation factor [Brucella abortus bv. 5 str. B3196] gi|23347198|gb|AAN29351.1| Sua5/YciO/YrdC family protein [Brucella suis 1330] gi|62195524|gb|AAX73824.1| Sua5/YciO/YrdC family protein [Brucella abortus bv. 1 str. 9-941] gi|82615421|emb|CAJ10390.1| Sua5/YciO/YrdC/YwlC protein family:SUA5:SUA5/yciO/yrdC, N-terminal [Brucella melitensis biovar Abortus 2308] gi|161335191|gb|ABX61496.1| Sua5/YciO/YrdC/YwlC family protein [Brucella canis ATCC 23365] gi|163673410|gb|ABY37521.1| Sua5/YciO/YrdC/YwlC family protein [Brucella suis ATCC 23445] gi|189019216|gb|ACD71938.1| Sua5/YciO/YrdC/YwlC protein family [Brucella abortus S19] gi|225618571|gb|EEH15614.1| Sua5/YciO/YrdC/YwlC family protein [Brucella ceti str. Cudo] gi|237789716|gb|EEP63926.1| Sua5/YciO/YrdC/YwlC family protein [Brucella abortus str. 2308 A] gi|260097263|gb|EEW81138.1| Sua5/YciO/YrdC/YwlC protein family [Brucella abortus NCTC 8038] gi|260156505|gb|EEW91585.1| Sua5/YciO/YrdC/YwlC protein family [Brucella suis bv. 4 str. 40] gi|260667721|gb|EEX54661.1| Sua5/YciO/YrdC/YwlC family protein [Brucella abortus bv. 4 str. 292] gi|260671660|gb|EEX58481.1| Sua5/YciO/YrdC/YwlC family protein [Brucella abortus bv. 2 str. 86/8/59] gi|260674291|gb|EEX61112.1| Sua5/YciO/YrdC/YwlC family protein [Brucella abortus bv. 6 str. 870] gi|260872736|gb|EEX79805.1| Sua5/YciO/YrdC/YwlC family protein [Brucella abortus bv. 9 str. C68] gi|260923507|gb|EEX90075.1| Sua5/YciO/YrdC/YwlC family protein [Brucella ceti M13/05/1] gi|261293423|gb|EEX96919.1| Sua5/YciO/YrdC/YwlC family protein [Brucella ceti M644/93/1] gi|261304378|gb|EEY07875.1| Sua5/YciO/YrdC/YwlC family protein [Brucella pinnipedialis M163/99/10] gi|261737622|gb|EEY25618.1| Sua5/YciO/YrdC/YwlC protein family [Brucella sp. F5/99] gi|261741504|gb|EEY29430.1| Sua5/YciO/YrdC/YwlC family protein [Brucella suis bv. 5 str. 513] gi|261744158|gb|EEY32084.1| Sua5/YciO/YrdC/YwlC family protein [Brucella suis bv. 3 str. 686] gi|264660316|gb|EEZ30577.1| Sua5/YciO/YrdC/YwlC family protein [Brucella pinnipedialis M292/94/1] gi|294820375|gb|EFG37374.1| translation factor [Brucella sp. NVSL 07-0026] gi|297174974|gb|EFH34321.1| translation factor [Brucella abortus bv. 5 str. B3196] Length = 323 Score = 261 bits (667), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 144/319 (45%), Positives = 195/319 (61%), Gaps = 7/319 (2%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D A+ +A E L G +AIPTETVYGLA D+ N + ++ K RP NPLI HV I Sbjct: 8 DDGAVLRAVEVLRRGGLVAIPTETVYGLAADAANGEGVAGIFAAKGRPQFNPLIAHVDGI 67 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD----IHPLSTANLKTACFRVPCGF 123 +M ++ + DP+S LA+ FWPGPLT+VL L D IHPL TA L T R+P G Sbjct: 68 AMAGRYVAFDPVSRRLAEAFWPGPLTIVLPLKERQDTERPIHPLVTAGLSTLAVRMPHGR 127 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + +I P+A PSAN SG+IS T+ + + + I LI+D G +G+ESTIV V Sbjct: 128 VRDVITALDSPVAAPSANTSGRISPTSAAAV-AGDLGGRIDLILDAGPCGVGVESTIVKV 186 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 ++ V +LRPGGL E ++ + +L + + Q+PGM++SHYAP + +RL V Sbjct: 187 DGDQ-VHLLRPGGLAAEEIEAFLGQKLRRA-EHAAAIQAPGMMESHYAPDASMRLAVSDV 244 Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303 P EAL+ FG + A LNLS TG L+EAA NLF++M+ D +GA++IA IP Sbjct: 245 KPGEALLAFGPHRVAESNRAAAVLNLSATGDLREAAANLFDFMRRLDATGAATIAVEPIP 304 Query: 304 NHGLGIAINNRLERAAAPR 322 GLG AIN+RL+RAAAPR Sbjct: 305 LDGLGEAINDRLKRAAAPR 323 >gi|256060542|ref|ZP_05450710.1| Sua5/YciO/YrdC/YwlC protein family [Brucella neotomae 5K33] gi|261324536|ref|ZP_05963733.1| Sua5/YciO/YrdC/YwlC family protein [Brucella neotomae 5K33] gi|261300516|gb|EEY04013.1| Sua5/YciO/YrdC/YwlC family protein [Brucella neotomae 5K33] Length = 323 Score = 261 bits (667), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 144/319 (45%), Positives = 195/319 (61%), Gaps = 7/319 (2%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D A+ +A E L G +AIPTETVYGLA D+ N + ++ K RP NPLI HV I Sbjct: 8 DDGAVLRAVEVLRRGGLVAIPTETVYGLAADAANGEGVAGIFAAKGRPQFNPLIAHVDGI 67 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD----IHPLSTANLKTACFRVPCGF 123 +M ++ + DP+S LA+ FWPGPLT+VL L D IHPL TA L T R+P G Sbjct: 68 AMAGRYVAFDPVSRRLAEAFWPGPLTIVLPLKERQDTERPIHPLVTAGLSTLAVRMPHGR 127 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + +I P+A PSAN SG+IS T+ + + + I LI+D G +G+ESTIV V Sbjct: 128 VRDVITALDSPVAAPSANTSGRISPTSAAAV-AGDLGGRIDLILDAGPCGVGVESTIVKV 186 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 ++ V +LRPGGL E ++ + +L + + Q+PGM++SHYAP + +RL V Sbjct: 187 DGDQ-VYLLRPGGLAAEEIEAFLGQKLRRA-EHAAAIQAPGMMESHYAPEASMRLAVSDV 244 Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303 P EAL+ FG + A LNLS TG L+EAA NLF++M+ D +GA++IA IP Sbjct: 245 KPGEALLAFGPHRVAESNRAAAVLNLSATGDLREAAANLFDFMRRLDATGAATIAVEPIP 304 Query: 304 NHGLGIAINNRLERAAAPR 322 GLG AIN+RL+RAAAPR Sbjct: 305 LDGLGEAINDRLKRAAAPR 323 >gi|256368861|ref|YP_003106367.1| Sua5/YciO/YrdC family protein [Brucella microti CCM 4915] gi|255999019|gb|ACU47418.1| Sua5/YciO/YrdC family protein [Brucella microti CCM 4915] Length = 323 Score = 261 bits (666), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 144/319 (45%), Positives = 195/319 (61%), Gaps = 7/319 (2%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D A+ +A E L G +AIPTETVYGLA D+ N + ++ K RP NPLI HV I Sbjct: 8 DDGAVLRAVEVLRRGGLVAIPTETVYGLAADAANGEGVAGIFAAKGRPQFNPLIVHVDGI 67 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD----IHPLSTANLKTACFRVPCGF 123 +M ++ + DP+S LA+ FWPGPLT+VL L D IHPL TA L T R+P G Sbjct: 68 AMAGRYVAFDPVSRRLAEAFWPGPLTIVLPLKERQDTERPIHPLVTAGLSTLAVRMPHGR 127 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + +I P+A PSAN SG+IS T+ + + + I LI+D G +G+ESTIV V Sbjct: 128 VRDVITALDSPVAAPSANTSGRISPTSAAAV-AGDLGGRIDLILDAGPCGVGVESTIVKV 186 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 ++ V +LRPGGL E ++ + +L + + Q+PGM++SHYAP + +RL V Sbjct: 187 DGDQ-VHLLRPGGLAAEEIEAFLGQKLRRA-EHAAAIQAPGMMESHYAPDASMRLAVSDV 244 Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303 P EAL+ FG + A LNLS TG L+EAA NLF++M+ D +GA++IA IP Sbjct: 245 KPGEALLAFGPHRVAESNRAAAVLNLSATGDLREAAANLFDFMRRLDATGAATIAVEPIP 304 Query: 304 NHGLGIAINNRLERAAAPR 322 GLG AIN+RL+RAAAPR Sbjct: 305 LDGLGEAINDRLKRAAAPR 323 >gi|254693189|ref|ZP_05155017.1| Sua5/YciO/YrdC/YwlC protein family [Brucella abortus bv. 3 str. Tulya] gi|261213430|ref|ZP_05927711.1| Sua5/YciO/YrdC/YwlC family protein [Brucella abortus bv. 3 str. Tulya] gi|260915037|gb|EEX81898.1| Sua5/YciO/YrdC/YwlC family protein [Brucella abortus bv. 3 str. Tulya] Length = 323 Score = 260 bits (665), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 144/319 (45%), Positives = 194/319 (60%), Gaps = 7/319 (2%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D A+ +A E L G +AIPTETVYGLA D+ N + ++ K RP NPLI HV I Sbjct: 8 DDGAVLRAVEVLRRGGLVAIPTETVYGLAADAANGEGVAGIFAAKGRPQFNPLIAHVDGI 67 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD----IHPLSTANLKTACFRVPCGF 123 +M ++ + DP+S LA+ FWPGPLT+VL L D IHPL TA L T R+P G Sbjct: 68 AMAGRYVAFDPVSRRLAEAFWPGPLTIVLPLKERQDTERPIHPLVTAGLSTLAVRMPHGR 127 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + +I P A PSAN SG+IS T+ + + + I LI+D G +G+ESTIV V Sbjct: 128 VRDVITALDSPAAAPSANTSGRISPTSAAAV-AGDLGGRIDLILDAGPCGVGVESTIVKV 186 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 ++ V +LRPGGL E ++ + +L + + Q+PGM++SHYAP + +RL V Sbjct: 187 DGDQ-VHLLRPGGLAAEEIEAFLGQKLRRA-EHAAAIQAPGMMESHYAPDASMRLAVSDV 244 Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303 P EAL+ FG + A LNLS TG L+EAA NLF++M+ D +GA++IA IP Sbjct: 245 KPGEALLAFGPHRVAESNRAAAVLNLSATGDLREAAANLFDFMRRLDATGAATIAVEPIP 304 Query: 304 NHGLGIAINNRLERAAAPR 322 GLG AIN+RL+RAAAPR Sbjct: 305 LDGLGEAINDRLKRAAAPR 323 >gi|256112929|ref|ZP_05453837.1| Sua5/YciO/YrdC/YwlC family protein [Brucella melitensis bv. 3 str. Ether] gi|265994364|ref|ZP_06106921.1| Sua5/YciO/YrdC/YwlC family protein [Brucella melitensis bv. 3 str. Ether] gi|262765477|gb|EEZ11266.1| Sua5/YciO/YrdC/YwlC family protein [Brucella melitensis bv. 3 str. Ether] Length = 323 Score = 259 bits (662), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 143/319 (44%), Positives = 196/319 (61%), Gaps = 7/319 (2%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D A+ +A E L G +AIPTETVYGLA D+ N + ++ K RP NPLI HV I Sbjct: 8 DDGAVLRAVEVLRRGGLVAIPTETVYGLAADAANGEGVAGIFAAKGRPQFNPLIAHVDGI 67 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD----IHPLSTANLKTACFRVPCGF 123 +M ++ + DP+S LA+ FWPGPLT+VL L D IHPL TA L T R+P G Sbjct: 68 AMAGRYVAFDPVSRRLAEAFWPGPLTIVLPLKERQDTERPIHPLVTAGLSTLAVRMPHGR 127 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + +I +A PSAN SG+IS T+ + + + +I LI+D G +G+ESTIV V Sbjct: 128 VRDVITALDSSVAAPSANTSGRISPTSAAAV-AGDLGGQIDLILDAGPCGVGVESTIVKV 186 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 ++ V +LRPGGL E ++ + +L + ++ Q+PGM++SHYAP + +RL V Sbjct: 187 DGDQ-VHLLRPGGLAAEEIEAFLGQKLRRA-EHSAAIQAPGMMESHYAPDASMRLAVSDV 244 Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303 P EAL+ FG + A LNLS TG L+EAA NLF++M+ D +GA++IA IP Sbjct: 245 KPGEALLAFGPHRVAESNRAAAVLNLSATGDLREAAANLFDFMRRLDATGAATIAVEPIP 304 Query: 304 NHGLGIAINNRLERAAAPR 322 GLG AIN+RL+RAAAPR Sbjct: 305 LDGLGEAINDRLKRAAAPR 323 >gi|254504637|ref|ZP_05116788.1| Sua5/YciO/YrdC/YwlC family protein, putative [Labrenzia alexandrii DFL-11] gi|222440708|gb|EEE47387.1| Sua5/YciO/YrdC/YwlC family protein, putative [Labrenzia alexandrii DFL-11] Length = 331 Score = 259 bits (661), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 137/309 (44%), Positives = 192/309 (62%), Gaps = 6/309 (1%) Query: 18 FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77 +D GL +A+PTETVYGLA D+ + TA R+++ K RP+ NPLI H+ ++ + H D Sbjct: 26 LIDGGL-VAVPTETVYGLAADATSGTACARIFQAKGRPSFNPLISHLPNLEAARHHGVFD 84 Query: 78 PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136 +L LA+ FWPGPLTLV+ ++I L+TA L T RVP G + L E G PLA Sbjct: 85 DRALKLAEAFWPGPLTLVVPKTKASEISDLATAGLSTVALRVPSGPIMRYLSEITGRPLA 144 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSANRSG+IS T + ++ + + + +ID G ++G+ESTI+ + +++V +LRPGG Sbjct: 145 APSANRSGKISPTRAEDVI-ADLGDALDFVIDAGPCEVGIESTIIGL-TDERVTLLRPGG 202 Query: 197 LEIETLKRAISVELEYCVDETS--TPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGN 254 L E ++ + +++ + P +PGML SHYAP +Q+RL A V EAL+ FG Sbjct: 203 LAREAIESVLQTKVQTAASNSQPEAPAAPGMLTSHYAPNAQMRLHARAVARDEALLSFGA 262 Query: 255 VPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNR 314 PI+ + A NLS +G L EAA LF M+ D SGA +I IPN GLG AIN+R Sbjct: 263 DPIEGRDEAFAETNLSPSGDLVEAAARLFQAMRTLDSSGAKTIQVQDIPNTGLGEAINDR 322 Query: 315 LERAAAPRN 323 L RAAAPR+ Sbjct: 323 LRRAAAPRD 331 >gi|148559471|ref|YP_001258429.1| Sua5/YciO/YrdC family protein [Brucella ovis ATCC 25840] gi|148370728|gb|ABQ60707.1| Sua5/YciO/YrdC family protein [Brucella ovis ATCC 25840] Length = 323 Score = 259 bits (661), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 143/319 (44%), Positives = 195/319 (61%), Gaps = 7/319 (2%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D A+ +A E L G +AIPTETVYGLA D+ N + ++ K RP NPLI HV I Sbjct: 8 DDGAVLRAVEVLRRGGLVAIPTETVYGLAADAANGEGVAGIFAAKGRPQFNPLIAHVDGI 67 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD----IHPLSTANLKTACFRVPCGF 123 +M ++ + DP+S LA+ FWPGPLT+VL L D IHPL TA L T R+P G Sbjct: 68 AMAGRYVAFDPVSRRLAEAFWPGPLTIVLPLKERQDTERPIHPLVTAGLSTLAVRMPHGR 127 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + +I P+A PSAN SG+IS T+ + + + I LI+D G +G+ESTIV V Sbjct: 128 VRDVITALDSPVAAPSANTSGRISPTSAAAV-AGDLGGRIDLILDAGPCSVGVESTIVKV 186 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 ++ V +LRPGGL E ++ + +L + + Q+PGM++SHYAP + +RL V Sbjct: 187 DGDQ-VHLLRPGGLAAEEIEAFLGQKLRRA-EHAAAIQAPGMMESHYAPDASMRLAVSDV 244 Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303 P EAL+ FG + A LNLS TG L+EAA NLF++M+ + +GA++IA IP Sbjct: 245 KPGEALLAFGPHRVAESNRAAAVLNLSATGDLREAAANLFDFMRRLNATGAATIAVEPIP 304 Query: 304 NHGLGIAINNRLERAAAPR 322 GLG AIN+RL+RAAAPR Sbjct: 305 LDGLGEAINDRLKRAAAPR 323 >gi|316932620|ref|YP_004107602.1| Sua5/YciO/YrdC/YwlC family protein [Rhodopseudomonas palustris DX-1] gi|315600334|gb|ADU42869.1| Sua5/YciO/YrdC/YwlC family protein [Rhodopseudomonas palustris DX-1] Length = 332 Score = 254 bits (649), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 142/326 (43%), Positives = 192/326 (58%), Gaps = 11/326 (3%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 + ++ TD++ +A L G +A PTETVYGL D+ N A+ RLY K RP+ NPLI Sbjct: 12 KTLTATDAD---EAVRALRGGGLVAFPTETVYGLGADASNAEAVARLYAAKGRPSFNPLI 68 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 HV+D+ + A D +L LA+ FWPGPLTLVL + + L+TA L + RVP Sbjct: 69 AHVADLDAARLIARFDTAALRLAETFWPGPLTLVLPKATNCSVCDLATAGLDSVALRVPS 128 Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 + L+ +G P+ PSANRSG +S T H+ ++ + I +I+DGG +G+ESTI Sbjct: 129 HPVAQALLRAFGGPVVAPSANRSGHVSPTTAAHV-AADLGGRIDVIVDGGPVMVGVESTI 187 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVEL----EYCVDETSTPQSPGMLKSHYAPRSQV 236 V C +LRPGG+ E ++R + +L + + P +PGML SHYAPR+ V Sbjct: 188 VG--CLGAPVLLRPGGVPREAIERVLGHKLGAPAATNITDDHAPLAPGMLASHYAPRATV 245 Query: 237 RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296 RL A V P EAL+ FG+ E A+ NLS G L EAA LF ++ D+ GA Sbjct: 246 RLNAAEVKPGEALLAFGSELPPGAETAVAVHNLSPRGDLAEAAAQLFGALRALDERGARG 305 Query: 297 IAFSSIPNHGLGIAINNRLERAAAPR 322 IA SIP+HGLG AIN+RL RAAAPR Sbjct: 306 IAVMSIPHHGLGEAINDRLRRAAAPR 331 >gi|218673734|ref|ZP_03523403.1| probable translation factor protein [Rhizobium etli GR56] Length = 277 Score = 253 bits (646), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 128/254 (50%), Positives = 166/254 (65%), Gaps = 2/254 (0%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81 G IA+PTETVYGLA D+ NP AI R+YE K RP NPLICH++D++M + HA DP+S Sbjct: 25 GFAIAMPTETVYGLAADATNPAAITRIYETKGRPRFNPLICHMADLAMAEHHAEFDPVSR 84 Query: 82 HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSAN 141 LA+ FWPGPLTLVL L + + IH L+TA L + RVP GF LI +G PLA PSAN Sbjct: 85 ALAEAFWPGPLTLVLPLKAESPIHSLATAGLDSVGVRVPKGFAGALIGAFGRPLAAPSAN 144 Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIET 201 SG IS T+ H+ + + +IPLI+D G S +G+ESTIV V+ + +VR+LRPGGL Sbjct: 145 TSGAISATSAAHV-EADLGAKIPLILDAGPSTVGVESTIVKVEGD-RVRLLRPGGLAARE 202 Query: 202 LKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIE 261 ++R L ++ ++PGML SHYAP + VRL A V P EALI FG ++ Sbjct: 203 IERIAGRPLLRAKKASAAIEAPGMLASHYAPGASVRLNASAVEPGEALIAFGGAAVEGAR 262 Query: 262 NAIISLNLSKTGKL 275 +A I L+LS G L Sbjct: 263 DARIVLDLSPRGDL 276 >gi|115526373|ref|YP_783284.1| Sua5/YciO/YrdC/YwlC [Rhodopseudomonas palustris BisA53] gi|115520320|gb|ABJ08304.1| translation factor SUA5 [Rhodopseudomonas palustris BisA53] Length = 327 Score = 253 bits (645), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 140/324 (43%), Positives = 189/324 (58%), Gaps = 6/324 (1%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +++S +DS R +D GL +A PTETVYGL D+ TA+ RLY+ K RPA NPLI Sbjct: 8 RLLSASDSAVDRAVACLIDGGL-VAFPTETVYGLGADATQATAVARLYQAKGRPAFNPLI 66 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 HV+D++ +K D +L LA+ FWPGPLTLV+ + + L+TA L T R+P Sbjct: 67 AHVADLAAAQKIGRFDQNALRLAQAFWPGPLTLVVQKAAGCPVAELATAGLDTIAIRIPA 126 Query: 122 -GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 + ++ G P+ PSANRSG +S T H+ + I LI+DGG +G+ESTI Sbjct: 127 HAVARAILRGLGRPVVAPSANRSGHVSPTTAAHV-RGDLDGRIDLIVDGGPVTVGVESTI 185 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETST-PQSPGMLKSHYAPRSQVRLR 239 V C K +LRPGGL + ++ + L + P +PGML SHYAPRS+VRL Sbjct: 186 VG--CFAKPVLLRPGGLPRQAIEAVLGEPLASPGEAAGAKPLAPGMLASHYAPRSRVRLD 243 Query: 240 AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF 299 A V P EAL+ FG+ + + A LNLS G L EAA NLF +++ D + IA Sbjct: 244 ATRVEPGEALLAFGSPLPQGADLAATVLNLSARGDLTEAAANLFGHLRALDGASPRGIAV 303 Query: 300 SSIPNHGLGIAINNRLERAAAPRN 323 +P+ GLG AIN+RL RAA PR Sbjct: 304 MPVPHEGLGEAINDRLARAAVPRE 327 >gi|328544911|ref|YP_004305020.1| translation factor sua5 protein [polymorphum gilvum SL003B-26A1] gi|326414653|gb|ADZ71716.1| Probable translation factor sua5 protein [Polymorphum gilvum SL003B-26A1] Length = 332 Score = 249 bits (635), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 138/310 (44%), Positives = 183/310 (59%), Gaps = 4/310 (1%) Query: 16 CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75 CE L AG + +PTETVYGLA D+ N A +Y K RP NPLI H+ + ++H Sbjct: 23 CEALLAGNLVGVPTETVYGLAADATNGRACAAIYAAKGRPRFNPLISHLESLDAARRHGV 82 Query: 76 VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134 D + LA+ FWPGPLTLV+ + + I L TA L T RVP + L E G P Sbjct: 83 FDARAHALAQAFWPGPLTLVVPKAAGSPICDLVTAGLDTVALRVPAAPVMRFLAERTGRP 142 Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194 LA PSAN SG+IS T ++ + + +ID G IG+ESTIV + + V +LRP Sbjct: 143 LAAPSANLSGRISATTADDVIRD-LGDAVAFVIDAGPCPIGIESTIVGLAGAEPV-LLRP 200 Query: 195 GGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFG 253 GG+ E ++R + L ++ PQ+PGML SHYAP + VRL A V EAL+ FG Sbjct: 201 GGIAREAIERVLGRPLAAAQTEQADAPQAPGMLTSHYAPNATVRLAATEVASGEALLAFG 260 Query: 254 NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINN 313 P +E A+ ++NLS TG L EAA LF+ ++ D SGA++I IP+ GLG AIN+ Sbjct: 261 PTPPAGVERAVATVNLSPTGDLAEAAATLFSALRRLDASGAATICVQPIPDGGLGEAIND 320 Query: 314 RLERAAAPRN 323 RL RAAAPR+ Sbjct: 321 RLRRAAAPRH 330 >gi|90420143|ref|ZP_01228051.1| Sua5/YciO/YrdC/YwlC family protein [Aurantimonas manganoxydans SI85-9A1] gi|90335477|gb|EAS49227.1| Sua5/YciO/YrdC/YwlC family protein [Aurantimonas manganoxydans SI85-9A1] Length = 322 Score = 248 bits (634), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 135/299 (45%), Positives = 182/299 (60%), Gaps = 3/299 (1%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 + IPTETVYGLA D+ + A+ R++E K RP NPLICHV D++M A + P++ LA Sbjct: 27 VGIPTETVYGLAADATDGAAVARIFEAKGRPRFNPLICHVPDLAMAATLAEIGPVAAMLA 86 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSG 144 + FWPGPLT+VL L + +HPL+TA L T R P G +L G PLA PSAN SG Sbjct: 87 EAFWPGPLTMVLPLKEGSPVHPLATAGLATVAIRAPQGIAGRLAAALGRPLAAPSANPSG 146 Query: 145 QISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKR 204 ++S TN +L + +PLI+DGG ++G+ESTIV + ++ V +LR GG+ L R Sbjct: 147 RVSPTNAGQVL-RGLGGRLPLILDGGPCEVGVESTIVLPEADRLV-LLRAGGVGRAELAR 204 Query: 205 AISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAI 264 A + + + + +PG L SHYAP +VRL A V P E LI FG P+ + A Sbjct: 205 ATGLPVVDPAGDAAI-NAPGQLTSHYAPSGRVRLDATDVAPGEYLIAFGPAPVAGQDRAA 263 Query: 265 ISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRN 323 +NLS +G L+EAA LF + D ++IA + IP GLG AIN+RL RAAAPR Sbjct: 264 AIVNLSPSGDLREAAAGLFAALAGFDAPEITAIAVAPIPQSGLGEAINDRLRRAAAPRG 322 >gi|148253877|ref|YP_001238462.1| translation factor SUA5 [Bradyrhizobium sp. BTAi1] gi|146406050|gb|ABQ34556.1| translation factor SUA5 [Bradyrhizobium sp. BTAi1] Length = 333 Score = 248 bits (632), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 140/310 (45%), Positives = 183/310 (59%), Gaps = 9/310 (2%) Query: 18 FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77 F GL +A PTETVYGL D+ N AI RLY+ K RPA NPLI HV+D++ ++ D Sbjct: 28 FARGGL-VAFPTETVYGLGADASNAAAITRLYQAKGRPAFNPLIAHVADVAAARRIGRFD 86 Query: 78 PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLA 136 ++ LA+ FWPGPLTLVL + L+TA L T RVP + L+ +G + Sbjct: 87 AVAERLAQAFWPGPLTLVLPQAEGCPVADLATAGLDTVAIRVPAHPVARALLAAFGGAVV 146 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SG +S T H+ ++ + I LI+DGG ++G+ESTI+ C + +LRPGG Sbjct: 147 APSANISGHVSPTMAAHV-AADLDGRIDLILDGGAVEVGVESTIIG--CFDEPTLLRPGG 203 Query: 197 LEIET----LKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRF 252 + E L R ++ + P +PGML SHYAPR+ VRL A V P EAL+ F Sbjct: 204 VPREAIEAVLGRPLARAAAAEAQASEQPLAPGMLASHYAPRAAVRLAATEVAPDEALLAF 263 Query: 253 GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAIN 312 G V I +A LNLS +G EAA +LF Y++ D GA SIA IP+ GLG AIN Sbjct: 264 GPVAIPGAADAAAMLNLSPSGDPAEAATHLFGYLRSLDAKGARSIAVMPIPDDGLGEAIN 323 Query: 313 NRLERAAAPR 322 +RL RAAAPR Sbjct: 324 DRLRRAAAPR 333 >gi|254452824|ref|ZP_05066261.1| Sua5/YciO/YrdC/YwlC protein family:SUA5 domain [Octadecabacter antarcticus 238] gi|198267230|gb|EDY91500.1| Sua5/YciO/YrdC/YwlC protein family:SUA5 domain [Octadecabacter antarcticus 238] Length = 315 Score = 247 bits (630), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 147/317 (46%), Positives = 181/317 (57%), Gaps = 13/317 (4%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 TD L A L G +A PTETVYGL VD+RN A+ RLY+ K RP+ NPLI HV Sbjct: 11 TDQAELDAAARVLAGGGLVAFPTETVYGLGVDARNSDAVARLYQAKGRPSFNPLIVHVGS 70 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125 I K+ D +L LA+ FWPG LTLVL L + I PL TA L+T RVP Sbjct: 71 IEAAKQFVEFDHTALVLAQAFWPGALTLVLPLRRDSAISPLVTAGLETLAIRVPDHSVAN 130 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 L+ +G P+A PSAN SGQ+S T H+ + I I+DGG +GLESTIV + Sbjct: 131 GLLAAFGGPVAAPSANPSGQVSPTKFAHV-RDLMTGRIDGIVDGGDCGVGLESTIVATKP 189 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245 +LR GGL +E ++ A+ +L D TS P SPG L SHYAP VRL A V Sbjct: 190 TPT--LLRAGGLPVEAIEAALGYDLALAGD-TSAPSSPGQLASHYAPAGTVRLNAQTVEA 246 Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305 E L+ FG V +LNLS +G L AA LF+ + + GA+ IA S IP+H Sbjct: 247 GETLLGFGPVD--------AALNLSPSGDLIHAAARLFDALHQLNAMGAARIAVSPIPDH 298 Query: 306 GLGIAINNRLERAAAPR 322 GLG AIN+RL RAAAPR Sbjct: 299 GLGRAINDRLRRAAAPR 315 >gi|192289677|ref|YP_001990282.1| Sua5/YciO/YrdC/YwlC family protein [Rhodopseudomonas palustris TIE-1] gi|192283426|gb|ACE99806.1| Sua5/YciO/YrdC/YwlC family protein [Rhodopseudomonas palustris TIE-1] Length = 326 Score = 246 bits (628), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 138/302 (45%), Positives = 177/302 (58%), Gaps = 7/302 (2%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 +A PTETVYGL D+ N A+ RLY K RP+ NPLI HV+D+ + A D +L LA Sbjct: 27 VAFPTETVYGLGADASNAEAVARLYAAKGRPSFNPLIAHVADLDAARTIARFDAAALRLA 86 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRS 143 + FWPGPLTLVL + + L+TA L + R+P + L+ +G P+ PSANRS Sbjct: 87 EAFWPGPLTLVLPKQADCSVCDLATAGLDSVAIRIPSHPVAQALLRAFGGPVVAPSANRS 146 Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203 G +S T H+ +S + I +I+DGG +G+ESTIV+ C +LRPGGL E ++ Sbjct: 147 GHVSPTTAAHV-ASDLDGRIDVIVDGGPVMVGVESTIVS--CLGAPVLLRPGGLPREAIE 203 Query: 204 RAISVELEYCVDETS---TPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNI 260 R + L + P +PGML SHYAPR+ VRL A V P EAL+ FG Sbjct: 204 RVLGQALGTPTTNNADDHAPLAPGMLASHYAPRALVRLNATEVKPGEALLAFGPELPPGA 263 Query: 261 ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 E A NLS G L EAA +LF ++ DD GA IA IP HGLG AIN+RL RAAA Sbjct: 264 ETAAAVHNLSPRGDLPEAAAHLFGALRALDDRGARGIAVMPIPFHGLGEAINDRLRRAAA 323 Query: 321 PR 322 PR Sbjct: 324 PR 325 >gi|254437009|ref|ZP_05050503.1| Sua5/YciO/YrdC/YwlC family protein, putative [Octadecabacter antarcticus 307] gi|198252455|gb|EDY76769.1| Sua5/YciO/YrdC/YwlC family protein, putative [Octadecabacter antarcticus 307] Length = 315 Score = 246 bits (628), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 144/318 (45%), Positives = 186/318 (58%), Gaps = 13/318 (4%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 +TD L KA L G +A PTETVYGL VD+ N A+ RLY K RP+ NPLI H+ Sbjct: 10 VTDRTELDKAACVLAGGGLVAFPTETVYGLGVDACNSDAVARLYLAKGRPSFNPLIVHIG 69 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124 I ++ D +L LA+ FWPG LTLVL L + I PL TA L T RVP G Sbjct: 70 SIEAAQQFVDFDDTALALAQAFWPGALTLVLPLRHDSTISPLVTAGLGTLAIRVPDHGVA 129 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 +L+ +G P+A PSAN SGQ+S T H+ + I +IDGG +GLESTI+ ++ Sbjct: 130 NRLLAAFGGPIAAPSANPSGQVSPTKFAHV-RDLMSGRIDGVIDGGDCGVGLESTIIAMK 188 Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244 +LR GGL +E ++ A+ L ETS P SPG L SHYAP+ VRL A V Sbjct: 189 PVPT--LLRAGGLPVEAIEAALGYNLAL-TGETSAPSSPGQLASHYAPKGTVRLNARSVE 245 Query: 245 PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPN 304 E L+ FG P++ + +NLS +G L +AA LF+ + + GA+ IA S IP+ Sbjct: 246 TGETLLGFG--PVEAV------INLSSSGDLVQAAAGLFDALHQLNAMGAARIAVSPIPD 297 Query: 305 HGLGIAINNRLERAAAPR 322 HGLG AIN+RL RAAAPR Sbjct: 298 HGLGRAINDRLRRAAAPR 315 >gi|118589276|ref|ZP_01546682.1| Sua5/YciO/YrdC/YwlC protein family:SUA5 domain protein [Stappia aggregata IAM 12614] gi|118437976|gb|EAV44611.1| Sua5/YciO/YrdC/YwlC protein family:SUA5 domain protein [Stappia aggregata IAM 12614] Length = 331 Score = 246 bits (628), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 138/311 (44%), Positives = 182/311 (58%), Gaps = 5/311 (1%) Query: 16 CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75 C L AG +A+PTETVYGLA D+ N TA +++ K RP NPLI HV + H Sbjct: 23 CAALMAGELVAVPTETVYGLAADATNGTACAKIFAAKGRPQFNPLISHVQTLGAALDHGV 82 Query: 76 VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134 D +L LA+ FWPGPLTLV+ + + I L+TA L+T RVP G + L E G P Sbjct: 83 FDERALALAEAFWPGPLTLVVPKRAGSPISDLATAGLQTVALRVPVGPVMRFLAEKTGRP 142 Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194 LA PSANRSG+IS T + ++ + + + +ID G +G+ESTIV + + R+LRP Sbjct: 143 LAAPSANRSGKISPTRAEDVV-ADLGPSLSFVIDAGACAVGIESTIVGL-VDGTPRLLRP 200 Query: 195 GGLEIETLKRAISVELEYCVDET--STPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRF 252 GGL E ++R + LE + P +PGML SHYAP + + L A V+ + L+ F Sbjct: 201 GGLAREDIERVLGQPLEGASPDMRPDAPAAPGMLTSHYAPDAAMLLNASEVSAGDGLLSF 260 Query: 253 GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAIN 312 G + E A NLS TG L EAA NLF M+ D G S+I IP+ GLG AIN Sbjct: 261 GTNRLPGAELAKAEFNLSPTGGLAEAAANLFRAMRFLDAQGVSTIKVQFIPSFGLGEAIN 320 Query: 313 NRLERAAAPRN 323 +RL RAAAPR+ Sbjct: 321 DRLRRAAAPRD 331 >gi|298294372|ref|YP_003696311.1| Sua5/YciO/YrdC/YwlC family protein [Starkeya novella DSM 506] gi|296930883|gb|ADH91692.1| Sua5/YciO/YrdC/YwlC family protein [Starkeya novella DSM 506] Length = 335 Score = 246 bits (627), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 139/306 (45%), Positives = 183/306 (59%), Gaps = 11/306 (3%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 +A+PTETVYGLA D+ +P A+ LY K RP+ NPLI HV DI ++ + P + LA Sbjct: 33 VALPTETVYGLACDATDPHAVAGLYAAKGRPSFNPLIAHVPDIDAARRVGHLTPAAETLA 92 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRS 143 + FWPGPLTLV+ + L+ A L + RVP + ++ G P+A PSANRS Sbjct: 93 RRFWPGPLTLVVPAIEGATSE-LARAGLSSVAIRVPAHPVAQAVLRAAGRPIAAPSANRS 151 Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203 G +S T+ H+ S+ + I LI+D G S +G+ESTI++ E V +LRPGGL E +K Sbjct: 152 GHVSPTSAAHV-SADLDGRIDLILDAGASAVGVESTILDCTGEVPV-MLRPGGLPREAIK 209 Query: 204 RAISVELE----YCVDETST---PQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVP 256 A+ L V+E P +PGML SHYAP VRLRA V P EAL+ F Sbjct: 210 EALGAPLASPAPRVVEEAEAGEAPLAPGMLASHYAPTIPVRLRAREVKPGEALLTFAGAQ 269 Query: 257 IKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLE 316 E A+ L+LS TG L EAA NLF +++ D SGA +IA ++P HGLG AI +RL Sbjct: 270 PPGAEQAVARLDLSPTGDLVEAAANLFAHLRALDSSGAIAIAVVALPRHGLGEAIADRLR 329 Query: 317 RAAAPR 322 RAAAPR Sbjct: 330 RAAAPR 335 >gi|39934152|ref|NP_946428.1| SUA5/yciO/yrdC domain-containing protein [Rhodopseudomonas palustris CGA009] gi|39648000|emb|CAE26520.1| Sua5/YciO/YrdC/YwlC protein family:SUA5 domain [Rhodopseudomonas palustris CGA009] Length = 348 Score = 244 bits (623), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 140/308 (45%), Positives = 178/308 (57%), Gaps = 7/308 (2%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L G +A PTETVYGL D+ N A+ RLY K RP+ NPLI HV+D+ + A D Sbjct: 43 LRGGGLVAFPTETVYGLGADASNAEAVARLYAAKGRPSFNPLIAHVADLDAARTIARFDA 102 Query: 79 LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAI 137 +L LA+ FWPGPLTLVL + + L+TA L + R+P + L+ + P+ Sbjct: 103 AALRLAEAFWPGPLTLVLPKQADCSVCDLATAGLDSVAIRIPSHPVAQALLRAFDGPVVA 162 Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197 PSANRSG +S T H+ +S + I +I+DGG +G+ESTIV+ C +LRPGGL Sbjct: 163 PSANRSGHVSPTTAAHV-ASDLDGRIDVIVDGGPVMVGVESTIVS--CLGAPVLLRPGGL 219 Query: 198 EIETLKRAISVELEYCVDETS---TPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGN 254 E ++R + L S P +PGML SHYAPR+ VRL A V P EAL+ FG Sbjct: 220 PREAIERVLDQALGTPTTNNSDDHAPVAPGMLASHYAPRALVRLNATEVKPGEALLAFGP 279 Query: 255 VPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNR 314 E A NLS G L EAA +LF ++ DD GA IA IP HGLG AIN+R Sbjct: 280 ELPPGAETAAAVHNLSPRGDLTEAAAHLFGALRALDDRGARGIAVMPIPFHGLGEAINDR 339 Query: 315 LERAAAPR 322 L RAAAPR Sbjct: 340 LRRAAAPR 347 >gi|220922794|ref|YP_002498096.1| Sua5/YciO/YrdC/YwlC family protein [Methylobacterium nodulans ORS 2060] gi|219947401|gb|ACL57793.1| Sua5/YciO/YrdC/YwlC family protein [Methylobacterium nodulans ORS 2060] Length = 335 Score = 243 bits (619), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 132/316 (41%), Positives = 182/316 (57%), Gaps = 3/316 (0%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D+ L +A L G +A PTETVYGL D+ N A+ +Y K+RP NPLI H+ D+ Sbjct: 22 DAAGLAEAARLLREGRLVAFPTETVYGLGGDATNGAAVAGIYAAKERPRFNPLIAHLPDL 81 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + ++ + P +L LA+ FWPGPLTLV+ + L+ A L + RVP + Sbjct: 82 AAARREGAFGPEALRLAETFWPGPLTLVVPRAEDACVCDLALAGLDSVALRVPAARLARD 141 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+ G P+A PSANRSG++S TN H+L + I ++DGG +G+ESTIV + Sbjct: 142 LLRAVGRPVAAPSANRSGRVSPTNADHVLGD-LDGRIAAVLDGGACPVGVESTIVAC-LD 199 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246 ++LRPGG+ E ++ + L P +PG+L SHYAPR+ VRL A + Sbjct: 200 GDPQLLRPGGVPREAIEAVLGRPLRAPGAAGEAPVAPGLLASHYAPRAAVRLDAAAIGED 259 Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306 EA + FG + A LNLS +G L EAA NLF+ ++ D SGA++IA IP HG Sbjct: 260 EAALLFGEARPAGLARARFILNLSPSGDLAEAAANLFSMLRRLDASGAATIAVMPIPRHG 319 Query: 307 LGIAINNRLERAAAPR 322 LG AI +RL RAAAPR Sbjct: 320 LGEAIADRLARAAAPR 335 >gi|307941534|ref|ZP_07656889.1| protein SUA5 [Roseibium sp. TrichSKD4] gi|307775142|gb|EFO34348.1| protein SUA5 [Roseibium sp. TrichSKD4] Length = 329 Score = 242 bits (617), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 135/317 (42%), Positives = 181/317 (57%), Gaps = 4/317 (1%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D+ L L AG + +PTETVYGLA D+ NP A R++E K RP NPLI H + Sbjct: 15 DTAMLSTVSTALKAGDLVGVPTETVYGLAADASNPEACARIFEAKGRPQFNPLISHADTL 74 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 ++H + + LA FWPGPLTLVL T+ I L+TA L + RVP G + Sbjct: 75 ETARQHGVFNAKADRLAAAFWPGPLTLVLPKRETSSISDLATAGLDSVALRVPAGAVMRA 134 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L G PLA PSAN SG+IS T ++ + + + +ID G +G+ESTI+ + Sbjct: 135 LAAETGCPLAAPSANLSGKISATTADDVI-ADLGSSVAHVIDAGPCPVGVESTIIAC-ID 192 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETST-PQSPGMLKSHYAPRSQVRLRAIHVNP 245 +VR+LRPGG+ E ++ + L+ T PQ+PGML SHYAP ++VRL A HV Sbjct: 193 DQVRLLRPGGVPAEDIECVLGHPLDVVRAANDTNPQAPGMLTSHYAPGARVRLEADHVEA 252 Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305 EAL+ FG + + A NLS+ G L+EAA LF ++ D S A ++ IP Sbjct: 253 GEALLAFGPASLPGADTANAVFNLSENGDLREAATRLFAGLRALDASKAQTVCVQHIPQE 312 Query: 306 GLGIAINNRLERAAAPR 322 GLG AIN+RL RAAAPR Sbjct: 313 GLGAAINDRLRRAAAPR 329 >gi|188583774|ref|YP_001927219.1| Sua5/YciO/YrdC/YwlC family protein [Methylobacterium populi BJ001] gi|179347272|gb|ACB82684.1| Sua5/YciO/YrdC/YwlC family protein [Methylobacterium populi BJ001] Length = 329 Score = 241 bits (616), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 131/317 (41%), Positives = 181/317 (57%), Gaps = 3/317 (0%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 D++ L +A + AG +A+PTETVYGL D+ +P A+ +Y K RP NPLI HV+ Sbjct: 15 ADADGLARAAALIGAGRLVALPTETVYGLGADATDPEAVAAIYAAKGRPRFNPLIAHVAT 74 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-K 125 + + D +L LA+ FWPGPLTLV+ ST + L+ A L + RVP T + Sbjct: 75 VEAALGEGTFDEAALRLAEHFWPGPLTLVVPAASTGSVCDLARAGLDSVALRVPAHATAR 134 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 L+E G P+A PSANRSG++S T+ H+L + + I ++DGG +G+ES++V Sbjct: 135 ALLERVGRPVAAPSANRSGRVSPTSADHVL-TDLDGRIAAVLDGGACPVGVESSVVACLG 193 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245 R+LRPGG+ + + E D S P PG+L SHYAPR+ VRL A + P Sbjct: 194 GPP-RLLRPGGVTRAAIAAVLGFAPEAGGDPGSRPVGPGLLASHYAPRAGVRLDATGLEP 252 Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305 EA++ FG ++ A LS G EAA LF ++ D SGA +IA +P Sbjct: 253 GEAVLLFGAFRPAGLDRAAAVETLSARGDPAEAAARLFGALRRLDASGAPTIAVVPVPEE 312 Query: 306 GLGIAINNRLERAAAPR 322 GLG AIN+RL RAAAPR Sbjct: 313 GLGEAINDRLRRAAAPR 329 >gi|254471762|ref|ZP_05085163.1| Sua5/YciO/YrdC/YwlC family protein [Pseudovibrio sp. JE062] gi|211958964|gb|EEA94163.1| Sua5/YciO/YrdC/YwlC family protein [Pseudovibrio sp. JE062] Length = 329 Score = 241 bits (614), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 138/319 (43%), Positives = 188/319 (58%), Gaps = 3/319 (0%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + D+ + C+ L G +AIPTETVYGLA D+ N A +YE K RP+ NPLI H+ Sbjct: 13 LEDTQIFQDICDALSDGKLVAIPTETVYGLAADATNGKACAGIYEAKGRPSFNPLISHID 72 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFT 124 + + HA D +L LA+ FWPGPLTLVL L T+ + L+ A L+T RVP Sbjct: 73 SLEAAQTHAFFDDRALKLAEAFWPGPLTLVLPKLPTSPVSDLAVAGLETIALRVPRSAVM 132 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + L + G PLA PSAN SG+IS T + ++ + + + IID G + +G+ESTIV++ Sbjct: 133 RALCKRTGLPLAAPSANLSGRISGTTAEDVI-NDLKDHLSYIIDSGATPVGVESTIVSLV 191 Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244 ++ +LRPGGL E ++ + +L + S P +PGML SHYAP S +RL A V Sbjct: 192 GDRPT-LLRPGGLARENVEAVLGEKLVRAGTDDSAPMAPGMLTSHYAPNSHIRLNAEEVT 250 Query: 245 PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPN 304 EALI FG+V + A + LS + L EAA LF ++ AD IA IP+ Sbjct: 251 AGEALITFGSVLPDGSDKAAKLVPLSDSEDLTEAAARLFTALRQADLGENGKIAVMPIPH 310 Query: 305 HGLGIAINNRLERAAAPRN 323 HGLG AIN+RL RAAAPR+ Sbjct: 311 HGLGEAINDRLARAAAPRD 329 >gi|90425777|ref|YP_534147.1| Sua5/YciO/YrdC/YwlC [Rhodopseudomonas palustris BisB18] gi|90107791|gb|ABD89828.1| translation factor SUA5 [Rhodopseudomonas palustris BisB18] Length = 327 Score = 239 bits (611), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 139/316 (43%), Positives = 186/316 (58%), Gaps = 5/316 (1%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + + KA + L G +A PTETVYGL D+ N AI RLY+ K RP+ NPLI HV+D++ Sbjct: 15 DGVAKAVKCLRDGGLVAFPTETVYGLGCDAGNAAAIARLYQAKGRPSFNPLIAHVADLAA 74 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 ++ D + LA FWPGPLTLV+ + L+TA L T RVP + ++ Sbjct: 75 AERIGRFDGDARRLAASFWPGPLTLVVPKAEHCPVADLATAGLDTVAIRVPLHPVAQAIL 134 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 +G + PSANRSG +S T H+ + I LI++GG +G+ESTIV C + Sbjct: 135 RGFGGAVVAPSANRSGHVSPTTAAHV-HVDLDGRIQLIVNGGPVSVGVESTIV--ACFDQ 191 Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETST-PQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 +LRPGGL E ++ + L V T P +PGML SHYAPR++VRL A HV P E Sbjct: 192 PVLLRPGGLPREKIEAVLGRALAQPVAADPTRPLAPGMLASHYAPRTKVRLEATHVEPGE 251 Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307 AL+ FG + ++ + +NLS+ G L EAA NLF Y++ D GAS IA +P HGL Sbjct: 252 ALLAFGAAALPGVDATTVVMNLSEQGDLAEAAANLFGYLRALDAKGASGIAVMPVPRHGL 311 Query: 308 GIAINNRLERAAAPRN 323 G AIN+RL RAA PR Sbjct: 312 GEAINDRLRRAALPRE 327 >gi|92119409|ref|YP_579138.1| hypothetical protein Nham_4009 [Nitrobacter hamburgensis X14] gi|91802303|gb|ABE64678.1| translation factor SUA5 [Nitrobacter hamburgensis X14] Length = 328 Score = 239 bits (610), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 138/304 (45%), Positives = 181/304 (59%), Gaps = 7/304 (2%) Query: 20 DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL 79 D GL +A PTETVYGL D+ N A+ RLY K RPA NPLI HV D++ ++ A D Sbjct: 26 DGGL-VAFPTETVYGLGADAANAEAVARLYRAKGRPAFNPLIAHVGDLAAAQRIARFDAT 84 Query: 80 SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIP 138 +L LA FWPGPLTLVL + L+TA L T RVP + ++ +G + P Sbjct: 85 ALALASAFWPGPLTLVLPKAPRCPVADLATAGLDTIALRVPAHPVARDILRGFGGAVVAP 144 Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLE 198 SAN SG +S T H+ S + I LI+DGG ++G+ESTIV C + +LRPGG+ Sbjct: 145 SANLSGHVSPTTAAHV-QSDLAGRIDLIVDGGPVEVGVESTIVG--CFESPTLLRPGGIP 201 Query: 199 IETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVP 256 ++R + L Y P + GML SHYAPR++VRL A + EAL+ FG V Sbjct: 202 RADIERVLGSALAPHYPGAADGQPLASGMLASHYAPRARVRLNAASLTRGEALLAFGPVD 261 Query: 257 IKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLE 316 + I+ A +NLS+ G LKEAA NLF Y++ D SGA +IA +P+ GLG AIN+RL Sbjct: 262 LAGIDTAAAVMNLSERGDLKEAAANLFGYLRALDASGARTIAVMPVPDDGLGEAINDRLR 321 Query: 317 RAAA 320 RAAA Sbjct: 322 RAAA 325 >gi|114704376|ref|ZP_01437284.1| Sua5/YciO/YrdC/YwlC protein family:SUA5:SUA5/yciO/yrdC, N-terminal [Fulvimarina pelagi HTCC2506] gi|114539161|gb|EAU42281.1| Sua5/YciO/YrdC/YwlC protein family:SUA5:SUA5/yciO/yrdC, N-terminal [Fulvimarina pelagi HTCC2506] Length = 319 Score = 238 bits (607), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 128/298 (42%), Positives = 182/298 (61%), Gaps = 3/298 (1%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 + +PTETVYGLA D+ N A+ +++ +K+RP+ NPLI HV + A + L Sbjct: 25 VVVPTETVYGLAADATNGEAVAKIFAVKERPSFNPLISHVYGRELAALLAHFGEIEHRLT 84 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSG 144 + FWPGPLT+V L S +HPL+TA L T R P G +L PLA PSAN SG Sbjct: 85 EAFWPGPLTIVAPLRSDGGVHPLATAGLDTIALRQPVGVMAELSARLDRPLAAPSANLSG 144 Query: 145 QISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKR 204 ++S T+ H+ ++S+ + LI+DGG + +G+ESTIV + ++ V +LRPGG+ E + Sbjct: 145 RVSPTSAGHV-AASLGDRVSLILDGGTTSVGVESTIVRAESDRIV-LLRPGGVPREAIVE 202 Query: 205 AISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAI 264 A + +E + +T+ +PG + SHYAP +VRL A V P E LI FG P++ +A Sbjct: 203 ATGLPVETIL-QTTKISAPGQMSSHYAPFGRVRLDAASVEPGEWLIAFGPEPVRGESSAS 261 Query: 265 ISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 +NLS +G L+EAA NLF + D +IA IPN G+G AIN+RL+RAAAPR Sbjct: 262 GVVNLSPSGNLEEAAANLFGLLARLDRPDVPAIAVVPIPNEGIGEAINDRLKRAAAPR 319 >gi|77464318|ref|YP_353822.1| translation factor SUA5 [Rhodobacter sphaeroides 2.4.1] gi|77388736|gb|ABA79921.1| translation factor SUA5 [Rhodobacter sphaeroides 2.4.1] Length = 312 Score = 237 bits (604), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 136/315 (43%), Positives = 185/315 (58%), Gaps = 15/315 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A L AG +A+PTETVYGLA D+R+ A+ R++E K RP NPLI H+ D+ Sbjct: 11 AEGIAEAARLLAAGGLVALPTETVYGLAGDARDDRAVARIFEAKGRPQFNPLIVHLPDLE 70 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 +++A D +L LA+ FWPGPLTLVL L T + PL +A L T RVP ++L Sbjct: 71 AARRYARFDDEALRLAEAFWPGPLTLVLP-LGDTPVSPLVSAGLSTVAIRVPAHPLAQQL 129 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + +G PLA PSAN SG++S T +H+L + I ++DGG +G+ESTI+ E Sbjct: 130 LRAFGGPLAAPSANPSGRVSPTRPEHVL-DGLSGRIEAVLDGGTCGVGVESTIL-APGEP 187 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 + +LRPGGL E L+ + L P +PG L SHYAP + VRL A P E Sbjct: 188 PL-LLRPGGLPAEALEECLGRPL-VAGGSADRPSAPGQLASHYAPEAPVRLGATEARPGE 245 Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307 + I FG + NLS +G L EAA NLF++++ AD G IA + +P GL Sbjct: 246 SWIGFGKLGGPQ--------NLSPSGDLVEAAANLFHFLREADREG-RPIAVAPVPERGL 296 Query: 308 GIAINNRLERAAAPR 322 G AIN+RL RAAAPR Sbjct: 297 GRAINDRLRRAAAPR 311 >gi|221640201|ref|YP_002526463.1| translation factor SUA5 [Rhodobacter sphaeroides KD131] gi|221160982|gb|ACM01962.1| Translation factor SUA5 [Rhodobacter sphaeroides KD131] Length = 312 Score = 236 bits (603), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 136/315 (43%), Positives = 185/315 (58%), Gaps = 15/315 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A L AG +A+PTETVYGLA D+R+ A+ R++E K RP NPLI H+ D+ Sbjct: 11 AEGIAEAARLLAAGGLVALPTETVYGLAGDARDDRAVARIFEAKGRPQFNPLIVHLPDLG 70 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 +++A D +L LA+ FWPGPLTLVL L T + PL +A L T RVP ++L Sbjct: 71 AARRYARFDDEALRLAEAFWPGPLTLVLP-LGDTPVSPLVSAGLSTVAIRVPAHPLAQQL 129 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + +G PLA PSAN SG++S T +H+L + I ++DGG +G+ESTI+ E Sbjct: 130 LRAFGGPLAAPSANPSGRVSPTRPEHVL-DGLSGRIEAVLDGGTCGVGVESTIL-APGEP 187 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 + +LRPGGL E L+ + L P +PG L SHYAP + VRL A P E Sbjct: 188 PL-LLRPGGLPAEALEECLGRPL-VAGGSADRPSAPGQLASHYAPEAPVRLGATEARPGE 245 Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307 + I FG + NLS +G L EAA NLF++++ AD G IA + +P GL Sbjct: 246 SWIGFGKLGGPR--------NLSPSGDLVEAAANLFHFLREADREG-RPIAVAPVPERGL 296 Query: 308 GIAINNRLERAAAPR 322 G AIN+RL RAAAPR Sbjct: 297 GRAINDRLRRAAAPR 311 >gi|126463159|ref|YP_001044273.1| Sua5/YciO/YrdC/YwlC family protein [Rhodobacter sphaeroides ATCC 17029] gi|126104823|gb|ABN77501.1| translation factor SUA5 [Rhodobacter sphaeroides ATCC 17029] Length = 312 Score = 236 bits (602), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 136/315 (43%), Positives = 184/315 (58%), Gaps = 15/315 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A L AG +A+PTETVYGLA D+R+ A+ R++E K RP NPLI H+ D+ Sbjct: 11 AEGIAEAARLLAAGGLVALPTETVYGLAGDARDDRAVARIFEAKGRPQFNPLIVHLPDLG 70 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 +++A D +L LA+ FWPGPLTLVL L T + PL +A L T RVP ++L Sbjct: 71 AARRYARFDDEALRLAEAFWPGPLTLVLP-LGDTPVSPLVSAGLSTVAIRVPAHPLAQQL 129 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + +G PLA PSAN SG++S T H+L + I ++DGG +G+ESTI+ E Sbjct: 130 LRAFGGPLAAPSANPSGRVSPTRPDHVL-DGLSGRIEAVLDGGTCGVGVESTIL-APGEP 187 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 + +LRPGGL E L+ + L P +PG L SHYAP + VRL A P E Sbjct: 188 PL-LLRPGGLPAEALEECLGRPL-VAGGSADRPSAPGQLASHYAPEAPVRLGATEARPGE 245 Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307 + I FG + NLS +G L EAA NLF++++ AD G IA + +P GL Sbjct: 246 SWIGFGKLGGPR--------NLSPSGDLVEAAANLFHFLREADREG-RPIAVAPVPERGL 296 Query: 308 GIAINNRLERAAAPR 322 G AIN+RL RAAAPR Sbjct: 297 GRAINDRLRRAAAPR 311 >gi|149913215|ref|ZP_01901749.1| Sua5/YciO/YrdC family protein [Roseobacter sp. AzwK-3b] gi|149813621|gb|EDM73447.1| Sua5/YciO/YrdC family protein [Roseobacter sp. AzwK-3b] Length = 320 Score = 235 bits (600), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 138/323 (42%), Positives = 184/323 (56%), Gaps = 13/323 (4%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + D+ +A E L G +A PTETVYGL D+RN A+ ++E K RP NPLI HV Sbjct: 9 LPDAQGYARAAEILHEGGRVAFPTETVYGLGGDARNDMAVAGIFEAKGRPRFNPLIVHVE 68 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 + + + L+ LA+ FWPGPLT+VL L T + PL TA L T RVP Sbjct: 69 SAQAAQAYVAWSDLAERLARAFWPGPLTMVLPLKPDTGLSPLVTAELPTLAIRVPAHPVA 128 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + L+ T+G P+A PSAN SG+IS T H+L + + I ++DGG +G+ESTI+ + Sbjct: 129 QALLRTFGGPVAAPSANPSGRISPTLAAHVL-AGLDGRIEAVLDGGACDVGVESTILGL- 186 Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244 + V +LRPGG+ E ++ I + + E S +PG L SHYAP + VRL A Sbjct: 187 ADGPV-LLRPGGIAAEEIEAVIGAPVGHHA-EGSAISAPGQLASHYAPGASVRLNAETRQ 244 Query: 245 PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPN 304 E L+ FG V LNLS G L+EAA NLF ++ D GA +IA S IP+ Sbjct: 245 DGELLLGFGPV--------ACDLNLSPKGDLREAAANLFGHLHALDGQGADAIAVSPIPD 296 Query: 305 HGLGIAINNRLERAAAPRNQSQR 327 GLG AIN+RL RAAAPR + R Sbjct: 297 TGLGRAINDRLRRAAAPRPGTDR 319 >gi|332559208|ref|ZP_08413530.1| translation factor SUA5 [Rhodobacter sphaeroides WS8N] gi|332276920|gb|EGJ22235.1| translation factor SUA5 [Rhodobacter sphaeroides WS8N] Length = 312 Score = 235 bits (599), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 135/315 (42%), Positives = 185/315 (58%), Gaps = 15/315 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A L AG +A+PTETVYGLA D+R+ A+ R++E K RP NPLI H+ D+ Sbjct: 11 AEGIAEAARLLAAGGLVALPTETVYGLAGDARDDRAVARIFEAKGRPQFNPLIVHLPDLE 70 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 +++A D +L LA+ FWPGPLTLVL L T + PL +A L T R+P ++L Sbjct: 71 AARRYARFDDEALRLAEAFWPGPLTLVLP-LGDTPVSPLVSAGLSTVAIRMPAHPLAQQL 129 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + +G PLA PSAN SG++S T +H+L + I ++DGG +G+ESTI+ E Sbjct: 130 LRAFGGPLAAPSANPSGRVSPTRPEHVL-DGLSGRIEAVLDGGTCGVGVESTIL-APGEP 187 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 + +LRPGGL E L+ + L P +PG L SHYAP + VRL A P E Sbjct: 188 PL-LLRPGGLPAEALEECLGRPL-VAGGSADRPSAPGQLASHYAPEAPVRLGATEARPGE 245 Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307 + I FG + NLS +G L EAA NLF++++ AD G IA + +P GL Sbjct: 246 SWIGFGKLGGPR--------NLSPSGDLVEAAANLFHFLREADREG-RPIAVAPVPERGL 296 Query: 308 GIAINNRLERAAAPR 322 G AIN+RL RAAAPR Sbjct: 297 GRAINDRLRRAAAPR 311 >gi|119383189|ref|YP_914245.1| Sua5/YciO/YrdC/YwlC family protein [Paracoccus denitrificans PD1222] gi|119372956|gb|ABL68549.1| translation factor SUA5 [Paracoccus denitrificans PD1222] Length = 316 Score = 234 bits (596), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 141/326 (43%), Positives = 185/326 (56%), Gaps = 14/326 (4%) Query: 1 MQIMSIT-DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 MQ + + D +R A E L G P+AIPTETVYGLA D+RNP A+ R+YE K RP+ NP Sbjct: 1 MQTLILGHDPRGVRTAAELLAQGEPVAIPTETVYGLAGDARNPRAVARIYEAKGRPSFNP 60 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 LI HV D++ + A D +L LA+ FWPG LTLVL L I L TA L T RV Sbjct: 61 LIVHVPDLAAAGRIADFDDAALALARAFWPGALTLVLPLRPDAGIASLVTAGLDTVAIRV 120 Query: 120 PC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILS--SSICKEIPLIIDGGISKIGL 176 P ++++ +G PLA PSAN SG+IS T H + + I ++D G +G+ Sbjct: 121 PAHPAAQEVLRVFGGPLAAPSANPSGRISPTTAAHAADPETGLGGRIAAVLDAGACPVGV 180 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQV 236 ESTIV + + +LRPGG+ E ++ + L + P +PG L SHYAPR+ + Sbjct: 181 ESTIVG-WVDGQPALLRPGGVAAEAIEAVLGRPLARPEADPDAPTAPGQLTSHYAPRASL 239 Query: 237 RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296 RL A P E LI FG P+ + LS+TG L EAA LF+ + AD Sbjct: 240 RLNADAARPGEVLIGFG--PVAG------EMTLSETGDLTEAAARLFDLLHRADAE-ERP 290 Query: 297 IAFSSIPNHGLGIAINNRLERAAAPR 322 IA + +P GLG AIN+RL RAAAPR Sbjct: 291 IAVAPVPERGLGAAINDRLRRAAAPR 316 >gi|75676880|ref|YP_319301.1| Sua5/YciO/YrdC/YwlC [Nitrobacter winogradskyi Nb-255] gi|74421750|gb|ABA05949.1| translation factor SUA5 [Nitrobacter winogradskyi Nb-255] Length = 328 Score = 233 bits (594), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 133/302 (44%), Positives = 185/302 (61%), Gaps = 6/302 (1%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 +A PTETVYGL D+ N A+ RLY K RPA NPLI HVSD++ ++ A D +L L Sbjct: 30 VAFPTETVYGLGADAANAEAVARLYRAKGRPAFNPLIAHVSDLAAAQRIARFDAAALALT 89 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRS 143 + FWPGPLTLVL ++ + L+TA+L T RVP + ++ +G + PSAN S Sbjct: 90 EAFWPGPLTLVLPKVARCPVADLATASLDTIALRVPAHPVARAILRGFGGAVVAPSANLS 149 Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203 G +S T H+ + I LI+DGG ++G+ESTIV C + +LRPGG+ ++ Sbjct: 150 GHVSPTTAAHV-RHDLEGRIDLIVDGGPVEVGIESTIVG--CFDRPTLLRPGGISRADIE 206 Query: 204 RAISVELEYCVDETST--PQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIE 261 R + L + P++ GML SHYAPR+++RL A ++ P EAL+ FG V I+ Sbjct: 207 RVLGGPLVSPAPAAADGRPRASGMLASHYAPRARMRLNAANLAPGEALLAFGPVDPPGID 266 Query: 262 NAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 A+ +NLS+ G LKEAA +LF ++ D SGA +IA + IP GLG AIN+RL RAAAP Sbjct: 267 TAVAVMNLSERGDLKEAAAHLFGCLRALDASGARTIAVTPIPEDGLGEAINDRLRRAAAP 326 Query: 322 RN 323 + Sbjct: 327 KG 328 >gi|299134711|ref|ZP_07027903.1| Sua5/YciO/YrdC/YwlC family protein [Afipia sp. 1NLS2] gi|298590521|gb|EFI50724.1| Sua5/YciO/YrdC/YwlC family protein [Afipia sp. 1NLS2] Length = 326 Score = 233 bits (594), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 136/310 (43%), Positives = 181/310 (58%), Gaps = 10/310 (3%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 + L AG +A PTETVYGL D N AI RLYE K RP+ NPLI H+ + ++ A Sbjct: 21 DCLAAGGLVAFPTETVYGLGADGTNGKAIARLYEAKGRPSFNPLIAHLPTLEAAQRVAIF 80 Query: 77 DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPL 135 + +L LA+ FWPGPLTLVL + L+TA L T R+P + +++ G P+ Sbjct: 81 NETALKLARAFWPGPLTLVLPKAPGCPVSELATAGLDTVAVRIPAHPVAQAILQALGRPI 140 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 PSANRSG +S T H+L + I LI+DGG +G+ESTIV C +LRPG Sbjct: 141 VAPSANRSGHVSPTTAAHVL-HDLDGRIDLIVDGGPVSVGVESTIVG--CSGAPVLLRPG 197 Query: 196 GLEIETLKRAISVELEY--CVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFG 253 G ++ + V L + +P +PGML+SHYAP + VRL A +N EAL+ FG Sbjct: 198 GTPRADIEAVLGVPLGRLETIPGHDSPLAPGMLESHYAPAAAVRLGATALNADEALLAFG 257 Query: 254 N-VPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAIN 312 +P + +LNLS G L EAA NLF +++ D++GA +IA IP HGLG AIN Sbjct: 258 EALPGARPQR---TLNLSPRGDLIEAAANLFGHLRALDETGAQAIAVMPIPTHGLGEAIN 314 Query: 313 NRLERAAAPR 322 +RL RAAA R Sbjct: 315 DRLRRAAADR 324 >gi|146278497|ref|YP_001168656.1| Sua5/YciO/YrdC/YwlC family protein [Rhodobacter sphaeroides ATCC 17025] gi|145556738|gb|ABP71351.1| translation factor SUA5 [Rhodobacter sphaeroides ATCC 17025] Length = 312 Score = 233 bits (593), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 137/310 (44%), Positives = 178/310 (57%), Gaps = 15/310 (4%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 A L G +A+PTETVYGLA D+RN A+ R++E K RP NPLI HV D+ +++ Sbjct: 16 DAARILAGGGLVALPTETVYGLAGDARNDRAVARIFEAKGRPQFNPLIVHVPDLEAARRY 75 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYG 132 A D +L LA+ FWPGPLTLVL L + PL +A L T RVP ++L+ +G Sbjct: 76 ARFDAEALRLAETFWPGPLTLVLP-LEGEPVSPLVSAGLPTVAIRVPAHPLAQRLMRAFG 134 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192 PLA PSAN SG++S T +H+L + I ++DGG ++G+ESTI V +L Sbjct: 135 GPLAAPSANPSGRVSPTRPEHVL-EGLAGRIEAVLDGGACEVGVESTI--VAPGDPPLLL 191 Query: 193 RPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRF 252 RPGGL +E L+ I L + P +PG L SHYAP + VRL A P E I F Sbjct: 192 RPGGLPVEALEDCIGEPL-ITGGSSERPSAPGQLSSHYAPDAPVRLGATEAAPDETWIGF 250 Query: 253 GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAIN 312 G LNLS G L EAA NLF+ ++ AD G IA + +P GLG AIN Sbjct: 251 GRT--------GGPLNLSPGGDLVEAAANLFHLLRQADRLG-RPIAVAPVPERGLGRAIN 301 Query: 313 NRLERAAAPR 322 +RL RAA+PR Sbjct: 302 DRLRRAASPR 311 >gi|209886040|ref|YP_002289897.1| Sua5/YciO/YrdC/YwlC family protein [Oligotropha carboxidovorans OM5] gi|209874236|gb|ACI94032.1| Sua5/YciO/YrdC/YwlC family protein [Oligotropha carboxidovorans OM5] Length = 322 Score = 233 bits (593), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 137/316 (43%), Positives = 182/316 (57%), Gaps = 7/316 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + A R A E L AG +A PTETVYGL D N +AI RLYE K RP+ NPLI HV + Sbjct: 9 AEATRPAAECLAAGGLVAFPTETVYGLGADGTNGSAIARLYEAKGRPSFNPLIAHVPTLE 68 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 ++ A + + LA+ FWPGPLTLVL + + L+TA L+T R+P + + Sbjct: 69 AAQRIARFNDTAFKLARAFWPGPLTLVLPKTADCPVSDLATAGLETVAVRIPAHPVAQAI 128 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ G P+ PSANRSG +S T H+ + I LI+DGG ++G+ESTIV C Sbjct: 129 LQALGRPIVAPSANRSGHVSPTTAAHV-RDDLDGRIDLIVDGGPVQVGVESTIVG--CTG 185 Query: 188 KVRILRPGGLEIETLKRAISVEL-EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246 +LRPGG ++ + L + P +PGML SHYAP + VRL A + Sbjct: 186 TPILLRPGGTPRAAIEAVLGTPLARQPAPVQNGPLAPGMLASHYAPSANVRLNATELRNG 245 Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306 EAL+ FG P A +LNLS G L EAA NLF++++ D++GA +IA IP G Sbjct: 246 EALLAFG--PPLPGAPAGRTLNLSPRGDLIEAAANLFSHLRALDETGARTIAVMPIPTAG 303 Query: 307 LGIAINNRLERAAAPR 322 LG AIN+RL RAAA R Sbjct: 304 LGEAINDRLRRAAAER 319 >gi|154247193|ref|YP_001418151.1| Sua5/YciO/YrdC/YwlC family protein [Xanthobacter autotrophicus Py2] gi|154161278|gb|ABS68494.1| Sua5/YciO/YrdC/YwlC family protein [Xanthobacter autotrophicus Py2] Length = 345 Score = 232 bits (592), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 129/316 (40%), Positives = 180/316 (56%), Gaps = 4/316 (1%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +++ A+ +A L G +A PTETVYGL D+ NP A+ LY K RPA NPLI Sbjct: 13 RLLPAAAPGAVEEAARLLSGGGLVAFPTETVYGLGADAANPQAVAALYAAKGRPAFNPLI 72 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 H D + ++ S + + LA+ FWPGPLTLV+ + L+ A L T RVP Sbjct: 73 AHTKDAASARRLGSFNRAANILAERFWPGPLTLVVPYAGGDGVCELARAGLDTVALRVPA 132 Query: 122 -GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 G LI +G + PSANRSG +S T H++ + I ++DGG + +G+ESTI Sbjct: 133 HGDAAALIAAFGGAVVAPSANRSGHVSPTTAAHVMDD-LSGRIDAVVDGGPTPVGVESTI 191 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCV-DETSTPQSPGMLKSHYAPRSQVRLR 239 ++V E V +LRPGGL E ++ A+ + V + + P +PG L SHYAPR+ +RL Sbjct: 192 LDVTGEVPV-LLRPGGLAREEIEAALGHPIARPVATDDARPLAPGRLASHYAPRAALRLD 250 Query: 240 AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF 299 A HV P EAL+ F + NA L+LS +G L EAA L+ ++ D SGAS+IA Sbjct: 251 ATHVAPGEALLTFAGMAPDGTPNAGSVLDLSPSGDLTEAAARLYGALRALDASGASAIAV 310 Query: 300 SSIPNHGLGIAINNRL 315 +P GLG AI++RL Sbjct: 311 VPLPRTGLGEAISDRL 326 >gi|163853503|ref|YP_001641546.1| Sua5/YciO/YrdC/YwlC family protein [Methylobacterium extorquens PA1] gi|254563432|ref|YP_003070527.1| hypothetical protein METDI5100 [Methylobacterium extorquens DM4] gi|163665108|gb|ABY32475.1| Sua5/YciO/YrdC/YwlC family protein [Methylobacterium extorquens PA1] gi|254270710|emb|CAX26715.1| conserved hypothetical protein, Sua5/YciO/YrdC domain [Methylobacterium extorquens DM4] Length = 329 Score = 231 bits (590), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 127/299 (42%), Positives = 170/299 (56%), Gaps = 3/299 (1%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 +A+PTETVYGL D+ +P A+ +Y K RP NPLI HV+ D +L LA Sbjct: 33 VALPTETVYGLGADATDPEAVAAIYAAKGRPRFNPLIAHVATPEAALAEGVFDEAALRLA 92 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANRS 143 K FWPGPLTLV+ + L+ A L + RVP + L+E G P+A PSANRS Sbjct: 93 KEFWPGPLTLVVPAAPGGSVCDLARAGLDSVALRVPAHDIARGLLEQVGRPVAAPSANRS 152 Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203 G++S T+ H+L+ + I ++DGG +G+EST+V R+LRPGG+ E L Sbjct: 153 GRVSPTSADHVLTD-LDGRIAAVLDGGECPVGVESTVVAC-LGGPPRLLRPGGVTREALA 210 Query: 204 RAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENA 263 + E D S P PG+L SHYAPR+ VRL A + P EA++ FG ++ A Sbjct: 211 AVLGFAPEAAGDPGSRPVGPGLLASHYAPRAGVRLEARTIEPSEAVLLFGAFRPAGLDRA 270 Query: 264 IISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 +LS+ G EAA LF ++ D SGA +IA +P GLG AIN+RL RAAAPR Sbjct: 271 AAVESLSERGDPAEAAARLFGALRRLDASGAPTIAVVPVPEEGLGEAINDRLRRAAAPR 329 >gi|86748257|ref|YP_484753.1| Sua5/YciO/YrdC/YwlC [Rhodopseudomonas palustris HaA2] gi|86571285|gb|ABD05842.1| translation factor SUA5 [Rhodopseudomonas palustris HaA2] Length = 329 Score = 231 bits (590), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 136/309 (44%), Positives = 176/309 (56%), Gaps = 7/309 (2%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L G I PTETVYGL D+ P A+ RLY K RP+ NPLI HV+++ +K A D Sbjct: 24 LRGGGLIGFPTETVYGLGADAAAPAAVARLYAAKGRPSFNPLIAHVANLDAARKIARFDS 83 Query: 79 LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAI 137 + LA FWPGPLTLVL + L+TA L + R+P + ++ +G + Sbjct: 84 RASALAAAFWPGPLTLVLPKAEECTVCDLATAGLDSVAVRIPAHPVAQAILRAFGGAVVA 143 Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197 PSANRSG +S T H+ + + I LI+DGG +G+ESTIV+ C +LRPGG+ Sbjct: 144 PSANRSGHVSPTTAAHV-RADLDGRIDLIVDGGAVDVGVESTIVS--CLGAPALLRPGGV 200 Query: 198 EIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGN 254 E ++R + L P +PGML SHYAPR+QVRL A V P EAL+ FG Sbjct: 201 PREAIERLLGCALADPSPAAAGEHAPLAPGMLASHYAPRAQVRLDAGEVRPGEALLAFGP 260 Query: 255 VPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNR 314 + E A + NLS L EAA NLF +++ D GA IA IP HGLG AIN+R Sbjct: 261 AALPGAETACATRNLSPAADLTEAAANLFGFLRELDAGGARVIAVMPIPPHGLGEAINDR 320 Query: 315 LERAAAPRN 323 L RAAAPR+ Sbjct: 321 LRRAAAPRD 329 >gi|240140923|ref|YP_002965403.1| hypothetical protein MexAM1_META1p4495 [Methylobacterium extorquens AM1] gi|240010900|gb|ACS42126.1| conserved hypothetical protein with Sua5/YciO/YrdC domain [Methylobacterium extorquens AM1] Length = 329 Score = 231 bits (590), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 127/299 (42%), Positives = 170/299 (56%), Gaps = 3/299 (1%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 +A+PTETVYGL D+ +P A+ +Y K RP NPLI HV+ D +L LA Sbjct: 33 VALPTETVYGLGADATDPEAVAAIYAAKGRPRFNPLIAHVATPEAALAEGVFDEAALRLA 92 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANRS 143 K FWPGPLTLV+ + L+ A L + RVP + L+E G P+A PSANRS Sbjct: 93 KKFWPGPLTLVVPAAPGGSVCDLARAGLDSVALRVPAHDIARALLERVGRPVAAPSANRS 152 Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203 G++S T+ H+L+ + I ++DGG +G+EST+V ++LRPGG+ E L Sbjct: 153 GRVSPTSADHVLTD-LDGRIAAVLDGGECPVGVESTVVACLGGPP-QLLRPGGVTREALA 210 Query: 204 RAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENA 263 + E D S P PG+L SHYAPR+ VRL A V P EA++ FG ++ A Sbjct: 211 AVLGFAPEAASDPGSRPVGPGLLASHYAPRAGVRLEARTVEPSEAVLLFGAFRPAGLDRA 270 Query: 264 IISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 +LS+ G EAA LF ++ D SGA +IA +P GLG AIN+RL RAAAPR Sbjct: 271 AAVESLSERGDAAEAAARLFGALRRLDASGAPTIAVVPVPEEGLGEAINDRLRRAAAPR 329 >gi|148553004|ref|YP_001260586.1| translation factor SUA5 [Sphingomonas wittichii RW1] gi|148498194|gb|ABQ66448.1| translation factor SUA5 [Sphingomonas wittichii RW1] Length = 313 Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 134/316 (42%), Positives = 192/316 (60%), Gaps = 13/316 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + +A + GLP+ +PTETVYGLA D+ + A+ +Y K RP+ NPLI HV+D+ Sbjct: 10 DPTGIAEAAALIARGLPVGVPTETVYGLAGDATSGEAVAAIYAAKGRPSFNPLIVHVTDL 69 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 +M + A + PL+ LA+ FWPGPLT+VL + I L+TA L + R+P + Sbjct: 70 AMAGRVAILPPLARRLAERFWPGPLTMVLPAAPGSPIASLTTAGLPSVAVRMPAHPAIRA 129 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LI G PLA PSAN SG IS T +H+ + S+ I L++D G + +G+ESTIV V+ + Sbjct: 130 LILASGRPLAAPSANASGSISATRAEHV-ARSLAGRITLVLDDGPTAVGIESTIVAVETD 188 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246 ++R+LRPG + +E L A V +E D + ++PG + SHYAP +RL A Sbjct: 189 -RLRLLRPGAIIVEMLAEAAGVAVERRGD--GSIEAPGQMASHYAPSKPLRLNAERAKAG 245 Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306 E LI FG V + LS +G+L EAA LF+ + AD S A++IA + +P+ G Sbjct: 246 EYLIGFGAV--------AGDVTLSASGRLDEAAARLFDLLHAADQSDAAAIAVAPVPSDG 297 Query: 307 LGIAINNRLERAAAPR 322 LG+AIN+RL+RAAAPR Sbjct: 298 LGLAINDRLQRAAAPR 313 >gi|182678988|ref|YP_001833134.1| Sua5/YciO/YrdC/YwlC family protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182634871|gb|ACB95645.1| Sua5/YciO/YrdC/YwlC family protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 326 Score = 230 bits (587), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 132/318 (41%), Positives = 190/318 (59%), Gaps = 9/318 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++ + KA L G +A PTETVYGL D+ A+ ++Y K+RP+ NPLI HV+ ++ Sbjct: 12 TSEITKAASILRQGGLVAFPTETVYGLGADATRDEAVAKIYAAKERPSFNPLIAHVASLA 71 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + H ++L LA FWPGPLTLV+ + + I L+ A L + RVP + L Sbjct: 72 EAQCHGIFSDMALRLAACFWPGPLTLVVPVSPESKICALARAGLDSVALRVPAHPIARAL 131 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 IE G PLA PSANRSG++S + +H+ + + LI+DGG +G+ESTI++ E Sbjct: 132 IEATGLPLAAPSANRSGRVSPVSAEHV-REDLGDRVDLILDGGRCPVGVESTIIDC-LEA 189 Query: 188 KVRILRPGGLEIETLKRAISVELEYC--VDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245 + R+LRPGG+ E ++ + LE + TS + PG+L SHYAPR++VRL A + Sbjct: 190 QPRLLRPGGIPREAIETCLGRILEAPPRLTATSPLRGPGLLASHYAPRAKVRLDATDLQK 249 Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305 EA + FG + A +L+LS +G L EAA +LF Y++ D G +IA + IP Sbjct: 250 GEAGLDFGG----HFAKAAHTLDLSPSGDLTEAAAHLFTYLRHLDALGLETIAVAPIPET 305 Query: 306 GLGIAINNRLERAAAPRN 323 GLG AIN+RL RAAAPR+ Sbjct: 306 GLGEAINDRLRRAAAPRH 323 >gi|218532361|ref|YP_002423177.1| Sua5/YciO/YrdC/YwlC family protein [Methylobacterium chloromethanicum CM4] gi|218524664|gb|ACK85249.1| Sua5/YciO/YrdC/YwlC family protein [Methylobacterium chloromethanicum CM4] Length = 329 Score = 230 bits (587), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 127/299 (42%), Positives = 171/299 (57%), Gaps = 3/299 (1%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 +A+PTETVYGL D+ +P A+ +Y K RP NPLI HV+ D +L LA Sbjct: 33 VALPTETVYGLGADATDPEAVAAIYAAKGRPRFNPLIAHVATPEAALAEGVFDEAALRLA 92 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANRS 143 K FWPGPLTLV+ + L+ A L + RVP + L+E G P+A PSANRS Sbjct: 93 KKFWPGPLTLVVPAAPDCSVCDLARAGLDSVALRVPAHDIARALLERVGRPVAAPSANRS 152 Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203 G++S T+ H+L+ + I ++DGG +G+EST+V R+LRPGG+ E L Sbjct: 153 GRVSPTSADHVLTD-LDGRIAAVLDGGECPVGVESTVVACLGGPP-RLLRPGGVTREALA 210 Query: 204 RAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENA 263 + E D S P PG+L SHYAPR+ VRL A + P EA++ FG +++A Sbjct: 211 AVLGFAPEAAGDPGSRPVGPGLLASHYAPRAGVRLEARIIEPSEAVLLFGAFRPAGLDHA 270 Query: 264 IISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 +LS+ G EAA LF ++ D SGA +IA +P GLG AIN+RL RAAAPR Sbjct: 271 AAVESLSERGDPAEAAARLFGALRRLDASGAPTIAVVPVPEEGLGEAINDRLRRAAAPR 329 >gi|85703463|ref|ZP_01034567.1| Sua5/YciO/YrdC family protein [Roseovarius sp. 217] gi|85672391|gb|EAQ27248.1| Sua5/YciO/YrdC family protein [Roseovarius sp. 217] Length = 313 Score = 229 bits (585), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 140/324 (43%), Positives = 182/324 (56%), Gaps = 14/324 (4%) Query: 1 MQIMSIT-DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 MQ S++ D A E AG +A PTETVYGL D+RN A+ R++E K RP NP Sbjct: 1 MQTRSLSPDPAGFASAAEIWRAGGLVAFPTETVYGLGADARNDLAVARIFEAKGRPRFNP 60 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 LI HV +M + + + LA FWPGPLTLVL +L + L TA+L T RV Sbjct: 61 LIVHVESAAMAQTYVEWSDAAEILASAFWPGPLTLVLPILPGCGLSRLVTADLPTLAIRV 120 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P L+ +G P+A PSAN SG+IS T+ +H+L + + I ++DG +G+ES Sbjct: 121 PAHPIAHALLAEFGGPVAAPSANPSGRISPTSAEHVL-AGLSGRIEAVLDGEACPVGVES 179 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238 TIV + E +LRPGG+ E L+ A+ V LE P +PG + SHYAP +VRL Sbjct: 180 TIVGLAGEPT--LLRPGGIPGEVLEAALGVHLE-LYQTGDAPVAPGQMHSHYAPGVRVRL 236 Query: 239 RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIA 298 A E L+ FG PI LNLS +G L EAA NLF ++ D + IA Sbjct: 237 NATDRQEGEVLLGFG--PIDA------DLNLSPSGDLVEAAANLFGHLHALDALDVAGIA 288 Query: 299 FSSIPNHGLGIAINNRLERAAAPR 322 S IP+ GLG AIN+RL RAAAPR Sbjct: 289 VSPIPDIGLGRAINDRLRRAAAPR 312 >gi|85714355|ref|ZP_01045343.1| Sua5/YciO/YrdC/YwlC [Nitrobacter sp. Nb-311A] gi|85698802|gb|EAQ36671.1| Sua5/YciO/YrdC/YwlC [Nitrobacter sp. Nb-311A] Length = 360 Score = 229 bits (584), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 134/309 (43%), Positives = 185/309 (59%), Gaps = 11/309 (3%) Query: 20 DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL 79 D GL +A PTETVYGL D+ N AI RLY K RPA NPLI HVSD++ ++ A + + Sbjct: 58 DGGL-VAFPTETVYGLGADAANAEAIARLYRAKGRPAFNPLIAHVSDLAAAQRIARFNAI 116 Query: 80 SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIP 138 +L LA FWPGPLTLVL + + L+TA L T RVP + ++ +G + P Sbjct: 117 ALALADAFWPGPLTLVLPKSAQCPVADLATAGLDTIALRVPAHPVARAILRGFGGAVVAP 176 Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLE 198 SAN SG +S T H+ S + I LI+DGG ++G+ESTIV C + +LRPGG+ Sbjct: 177 SANLSGHVSPTTAAHV-QSDLAGRIDLIVDGGPVEVGIESTIVG--CFDRPTLLRPGGIS 233 Query: 199 IETLKRAISVELEY----CVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGN 254 ++R + L D P++ GML SHYAPR++VRL A+++ EAL+ FG Sbjct: 234 RADIERVLGRTLASPDPGAAD--GQPRASGMLASHYAPRAKVRLNAVNLARGEALLAFGP 291 Query: 255 VPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNR 314 + I+ A+ +NLS+ L+EAA NLF ++ D SG +IA +P+ GLG AIN+R Sbjct: 292 ADLSGIDAAVAVMNLSERRDLEEAAANLFGCLRALDASGVRTIAVMPVPDEGLGEAINDR 351 Query: 315 LERAAAPRN 323 L RAA P+ Sbjct: 352 LRRAAVPQG 360 >gi|297184204|gb|ADI20322.1| putative translation factor (sua5) [uncultured alpha proteobacterium EB080_L27A02] Length = 318 Score = 229 bits (583), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 134/323 (41%), Positives = 186/323 (57%), Gaps = 22/323 (6%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 +S+ A E L +G +A PTETVYGL ++ N A+ +Y KKRP NPLI HV ++ Sbjct: 9 NSDGYAYASEILKSGGLVAFPTETVYGLGANALNSDAVAEIYTAKKRPNFNPLIVHVLNL 68 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 +K A + +L LA FWPGPLT+V + + T++ L TA L T RVP +K Sbjct: 69 ETAQKFAVFNKDTLLLANKFWPGPLTVVAPIKNKTNLSKLITAGLDTVAIRVPAHPVARK 128 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV---NV 183 L+ET+ P+A PSAN SG IS T+ H+ S + I I++GG +GLESTI+ N Sbjct: 129 LLETFNGPIAAPSANPSGSISSTSAAHV-KSGLGGRIQAILNGGKCDVGLESTIILSNNG 187 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 QC ILR GG+ + ++ + + + T SPG L SHYAP + +R+ AI Sbjct: 188 QC----NILRSGGISEKEIEEVLGYRISLN-QNSDTLISPGQLSSHYAPNANLRMNAIKA 242 Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDS----GASSIAF 299 + E +I FG+V + LNLS G L EAA NLF Y+ +AD+ G + IA Sbjct: 243 DEDEYMIGFGDV--------VGQLNLSSQGNLIEAATNLFAYLHMADEDAITLGKTKIAI 294 Query: 300 SSIPNHGLGIAINNRLERAAAPR 322 + IP HGLG+AIN+RL RA+ P+ Sbjct: 295 AKIPMHGLGVAINDRLTRASTPK 317 >gi|84684410|ref|ZP_01012311.1| Putative translation factor [Maritimibacter alkaliphilus HTCC2654] gi|84667389|gb|EAQ13858.1| Putative translation factor [Rhodobacterales bacterium HTCC2654] Length = 317 Score = 229 bits (583), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 133/319 (41%), Positives = 183/319 (57%), Gaps = 13/319 (4%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + D + +A E L AG ++ PTETVYGL + + A+ R++E K RP NPLI HV Sbjct: 11 VPDDTGIARAAEVLLAGGLVSFPTETVYGLGGVATDDIAVARIFEAKGRPHFNPLIAHVP 70 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 D+ V K A + + LA+ FWPGPLTLVL + + + PL +A L T RVP Sbjct: 71 DLEAVSKIAELSERAHDLAQAFWPGPLTLVLPMRADAGLSPLVSAGLTTVAVRVPDHPLA 130 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 +KL+ G P+ PSAN SG+IS T H+L + + I ++DGG +G+ESTIV Sbjct: 131 QKLLRAVGRPVVAPSANPSGRISPTEAAHVL-AGLGGRIEAVLDGGPCSVGVESTIVGFN 189 Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244 E +LRPGGL E ++ A+ L E + +PG L SHYAP ++VRL A Sbjct: 190 PEPV--LLRPGGLPAEAIEDALGAPLARRA-EGAGINAPGQLASHYAPDARVRLDAEAAR 246 Query: 245 PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPN 304 P E ++ FG +A +NLS +G L EAA NLF + D +G + IA + +P+ Sbjct: 247 PGERMLGFG--------DADGEMNLSPSGDLVEAAANLFRMLHALDAAGDAPIAVAPVPD 298 Query: 305 HGLGIAINNRLERAAAPRN 323 GLG AIN+RL RAAAPR+ Sbjct: 299 TGLGRAINDRLRRAAAPRD 317 >gi|114771324|ref|ZP_01448744.1| Sua5/YciO/YrdC family protein [alpha proteobacterium HTCC2255] gi|114548249|gb|EAU51136.1| Sua5/YciO/YrdC family protein [alpha proteobacterium HTCC2255] Length = 318 Score = 229 bits (583), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 134/323 (41%), Positives = 187/323 (57%), Gaps = 22/323 (6%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 +S+ A E L +G +A PTETVYGL ++ N A+ +Y KKRP NPLI HV ++ Sbjct: 9 NSDGYAYASEILKSGGLVAFPTETVYGLGANALNSDAVAEIYTAKKRPNFNPLIVHVLNL 68 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 +K A + +L LA FWPGPLT+V + + T++ L TA L T RVP +K Sbjct: 69 ETAQKFAVFNKDTLLLANKFWPGPLTVVAPIKNKTNLSRLITAGLDTVAIRVPAHPVARK 128 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV---NV 183 L+ET+ P+A PSAN SG IS T+ H+ S + I I++GG +GLESTI+ N Sbjct: 129 LLETFNGPIAAPSANPSGSISSTSAAHV-KSGLGGRIQAILNGGKCDVGLESTIILSNNG 187 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 QC ILR GG+ + ++ + ++ + T SPG L SHYAP + +R+ AI Sbjct: 188 QC----NILRSGGISEKEIEEVLGYKISLN-QNSDTLISPGQLSSHYAPNANLRMNAIKA 242 Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDS----GASSIAF 299 + E +I FG+V + LNLS G L EAA NLF Y+ +AD+ G + IA Sbjct: 243 DEDEYMIGFGDV--------VGQLNLSSQGNLIEAATNLFAYLHMADEDAITLGKTKIAI 294 Query: 300 SSIPNHGLGIAINNRLERAAAPR 322 + IP HGLG+AIN+RL RA+ P+ Sbjct: 295 AKIPMHGLGVAINDRLTRASTPK 317 >gi|56551895|ref|YP_162734.1| Sua5/YciO/YrdC/YwlC family protein [Zymomonas mobilis subsp. mobilis ZM4] gi|56543469|gb|AAV89623.1| Sua5/YciO/YrdC/YwlC family protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 329 Score = 229 bits (583), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 134/325 (41%), Positives = 189/325 (58%), Gaps = 16/325 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 DS + KA + + G P+ +PTETVYGLA D+ + A+ R+Y+ K RP+ NPLI H++ I Sbjct: 16 DSKGIEKAVQLIRGGYPVGLPTETVYGLAADAFSGEAVARIYQAKGRPSFNPLIVHIAHI 75 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + + +L LA+ FWPG LT+VL L I + TA L T R+P ++ Sbjct: 76 EQAAEIVEFNDEALSLAQKFWPGALTMVLPLKKDAKIASIVTAGLDTVAIRMPSHPVMRQ 135 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 +I+ +GHPLA PSAN+SG IS T H+ S+ +I ++DGGI+ GLESTI+ V + Sbjct: 136 VIKAFGHPLAAPSANKSGSISPTTALHV-KESLNGKIAAVLDGGIADKGLESTIIYVGAD 194 Query: 187 KKVRILRPGGLEIETLKRAISVEL-EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245 ++++LRPG + E L ++ + + EY D P +PG L SHYAP VRL Sbjct: 195 -EIKLLRPGPITSEELAQSSPLPITEYKAD-GQNPVAPGQLVSHYAPSQPVRLNISQKEA 252 Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305 E LI FG++ + NLS +G L EAA +LF+ + + S IA + IP Sbjct: 253 DEWLIGFGDIAGDD--------NLSPSGDLTEAAAHLFSALHRGEKSAYPRIAIAPIPLE 304 Query: 306 GLGIAINNRLERAAAPR---NQSQR 327 G+G AIN+RL RAAAPR N SQR Sbjct: 305 GIGKAINDRLGRAAAPRDEQNTSQR 329 >gi|304393470|ref|ZP_07375398.1| Sua5/YciO/YrdC family protein [Ahrensia sp. R2A130] gi|303294477|gb|EFL88849.1| Sua5/YciO/YrdC family protein [Ahrensia sp. R2A130] Length = 337 Score = 229 bits (583), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 132/315 (41%), Positives = 180/315 (57%), Gaps = 10/315 (3%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 +T + +A L G + +PTETVYGLA D+ N TA+ ++Y K RP NPLI HV Sbjct: 17 MTTGDGFEQAARILREGGLLGVPTETVYGLAADACNATAVAKIYAAKGRPDFNPLIVHVD 76 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125 + M ++ A DPLS LA+ FWPGPLTLVL L + P TA L T R P G Sbjct: 77 SLKMAEELAVFDPLSRRLAEEFWPGPLTLVLPLRGDAALAPSVTAGLGTVALRQPIGVLA 136 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +L + G +A PSAN SG+IS T +H+ + + + L++DGG +G+ESTIV Sbjct: 137 ELASSLGTGIAAPSANSSGRISPTTAQHV-ADDLEDRVDLVLDGGTCAVGVESTIVKC-T 194 Query: 186 EKKVRILRPGGLEIETLKR-AISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244 K+ ILR GG+ + L A E E ++ ++PG L +HYAP +R+ A V+ Sbjct: 195 NGKINILRTGGITADQLTEIAPLAEPE----KSGKIEAPGQLLAHYAPDVPLRMNAHEVD 250 Query: 245 PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPN 304 E + FG P + +A SLNLS TG + EAA NLF MK D +G + IA +P Sbjct: 251 EGEGQLAFGPAP---LHSAGPSLNLSPTGDVAEAARNLFAMMKTLDSAGVAGIAVQPVPE 307 Query: 305 HGLGIAINNRLERAA 319 +G+G AIN+RL RAA Sbjct: 308 NGIGAAINDRLRRAA 322 >gi|329114409|ref|ZP_08243171.1| Putative protein YwlC [Acetobacter pomorum DM001] gi|326696485|gb|EGE48164.1| Putative protein YwlC [Acetobacter pomorum DM001] Length = 386 Score = 228 bits (581), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 127/319 (39%), Positives = 181/319 (56%), Gaps = 9/319 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S+ L+ A L G +A TETVYGL D+ P + R++E K RP NPLI H +D Sbjct: 62 SSGLQTAARILREGGLVAFGTETVYGLGGDATQPQTVARIFEAKNRPRFNPLISHFADAQ 121 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKL 127 + +PL+ LA +FWPGPLTL+L + + L+ L T RVP G T + L Sbjct: 122 AAFTQVTANPLAHKLAHMFWPGPLTLILPRAPHSTVSDLAADGLPTLAVRVPKGQTVQAL 181 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ P+A PSANRSG+IS ++ H+L + I ++D G ++G+EST++++ + Sbjct: 182 LKLVQRPIAAPSANRSGRISPSDAAHVL-EELDGRIDAVLDSGPCQVGVESTVLDISNPE 240 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 + +LRPGG+ +E L+ + + P SPG + SHYAP VRL A+ V P E Sbjct: 241 RPTLLRPGGITLEALQAVCGTIFMPETEVDAAPASPGRMLSHYAPHLPVRLNAVDVAPDE 300 Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS----SIAFSSIP 303 AL+ FGN +S NLS++G L+EAA LF ++ D G + IA IP Sbjct: 301 ALLAFGNT---QPSGTPLSWNLSESGNLEEAAARLFTGLRTLDKQGQNLHLRGIAVQPIP 357 Query: 304 NHGLGIAINNRLERAAAPR 322 HGLG+AI +RL RAAAPR Sbjct: 358 PHGLGLAIQDRLNRAAAPR 376 >gi|260752549|ref|YP_003225442.1| Sua5/YciO/YrdC/YwlC family protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258551912|gb|ACV74858.1| Sua5/YciO/YrdC/YwlC family protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 329 Score = 228 bits (581), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 130/319 (40%), Positives = 187/319 (58%), Gaps = 13/319 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 DS + KA + + G P+ +PTETVYGLA D+ + A+ R+Y+ K RP+ NPLI H++ I Sbjct: 16 DSKGIEKAVQLIRGGYPVGLPTETVYGLAADAFSGEAVARIYQAKGRPSFNPLIVHIAHI 75 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + + +L LA+ FWPG LT+VL L I + TA L T R+P ++ Sbjct: 76 EQAAEIVEFNDEALSLAQKFWPGALTMVLPLKKDAKIASIVTAGLDTVAIRMPSHPVMRQ 135 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 +I+ +GHPLA PSAN+SG IS T H+ S+ +I ++DGGI+ GLESTI+ V + Sbjct: 136 VIKAFGHPLAAPSANKSGSISPTTALHV-KESLNGKIAAVLDGGIADKGLESTIIYVGAD 194 Query: 187 KKVRILRPGGLEIETLKRAISVEL-EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245 ++++LRPG + E L ++ + + EY D P +PG L SHYAP VRL Sbjct: 195 -EIKLLRPGPITSEELAQSSHLPITEYKAD-GQNPVAPGQLVSHYAPSQPVRLNISQKEA 252 Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305 E LI FG++ + NLS +G L EAA +LF+ + + S IA + IP Sbjct: 253 DEWLIGFGDIAGDD--------NLSPSGDLTEAAAHLFSALHRGEKSAYPRIAIAPIPLE 304 Query: 306 GLGIAINNRLERAAAPRNQ 324 G+G AIN+RL RAAAPR++ Sbjct: 305 GIGKAINDRLGRAAAPRDE 323 >gi|255263958|ref|ZP_05343300.1| Sua5/YciO/YrdC family protein [Thalassiobium sp. R2A62] gi|255106293|gb|EET48967.1| Sua5/YciO/YrdC family protein [Thalassiobium sp. R2A62] Length = 354 Score = 228 bits (581), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 136/313 (43%), Positives = 182/313 (58%), Gaps = 13/313 (4%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 ++ +A L AG +A+PTETVYGL D+RN TA +YE K RP+ NPLI HV+D+S Sbjct: 53 SISRAAALLQAGGLVALPTETVYGLGADARNGTACAGIYEAKGRPSFNPLIVHVADVSHA 112 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129 + A ++ LA FWPGPLTLVL L I L TA L T RVP T+ L+ Sbjct: 113 RHFAVFSDVAEVLAATFWPGPLTLVLPLRPDAVIASLVTAGLHTVAIRVPRHPVTRDLLA 172 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 +G P+A PSAN SG+IS T H++ + I +I+ G S +G+ESTI++ C Sbjct: 173 AFGGPIAAPSANPSGRISATTPDHVI-DGLDGRIDAVIEAGASSVGVESTIIS--CVDTP 229 Query: 190 RILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREAL 249 +LR GGL + ++ + + + +T +PG L SHYAP+ +VRL A H E L Sbjct: 230 MLLRQGGLPVSEIEAVLDRPIGFDT-SPATLAAPGQLASHYAPKGRVRLNANHAIGDEIL 288 Query: 250 IRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGI 309 + FG+V L LS+TG L EAA LF + D GA++IA + IP HGLG Sbjct: 289 LGFGDV--------TGDLTLSETGDLVEAARVLFRRLHELDAMGATAIAVAPIPEHGLGA 340 Query: 310 AINNRLERAAAPR 322 AIN+RL RAAAPR Sbjct: 341 AINDRLRRAAAPR 353 >gi|241761788|ref|ZP_04759874.1| Sua5/YciO/YrdC/YwlC family protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373702|gb|EER63262.1| Sua5/YciO/YrdC/YwlC family protein [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 329 Score = 228 bits (581), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 133/325 (40%), Positives = 189/325 (58%), Gaps = 16/325 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 DS + KA + + G P+ +PTETVYGLA D+ + A+ R+Y+ K RP+ NPLI H++ I Sbjct: 16 DSKGIEKAVQLIRGGYPVGLPTETVYGLAADAFSGEAVARIYQAKGRPSFNPLIVHIAHI 75 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + + +L LA+ FWPG LT+VL L I + TA L T R+P ++ Sbjct: 76 EQAAEIVEFNDEALSLAQKFWPGALTMVLPLKKDAKIASIVTAGLDTVAIRMPSHPVMRQ 135 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 +I+ +GHPLA PSAN+SG IS T H+ S+ +I ++DGGI+ GLESTI+ + + Sbjct: 136 VIKAFGHPLAAPSANKSGSISPTTALHV-KESLNGKIAAVLDGGIADKGLESTIIYIGAD 194 Query: 187 KKVRILRPGGLEIETLKRAISVEL-EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245 ++++LRPG + E L ++ + + EY D P +PG L SHYAP VRL Sbjct: 195 -EIKLLRPGPITSEELAQSSHLPITEYKAD-GQNPVAPGQLVSHYAPSQPVRLNISQKEA 252 Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305 E LI FG++ + NLS +G L EAA +LF+ + + S IA + IP Sbjct: 253 DEWLIGFGDIAGDD--------NLSPSGDLTEAAAHLFSALHRGEKSAYPRIAIAPIPLE 304 Query: 306 GLGIAINNRLERAAAPR---NQSQR 327 G+G AIN+RL RAAAPR N SQR Sbjct: 305 GIGKAINDRLGRAAAPRDEQNTSQR 329 >gi|91975727|ref|YP_568386.1| Sua5/YciO/YrdC/YwlC [Rhodopseudomonas palustris BisB5] gi|91682183|gb|ABE38485.1| translation factor SUA5 [Rhodopseudomonas palustris BisB5] Length = 330 Score = 228 bits (580), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 137/309 (44%), Positives = 179/309 (57%), Gaps = 6/309 (1%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L G I PTETVYGL D+ NP A+ RLY K RP+ NPLI HV+ + + A D Sbjct: 24 LRGGGLIGFPTETVYGLGADAANPAAVARLYAAKGRPSFNPLIAHVASLDSARGLARFDA 83 Query: 79 LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAI 137 +L LA+ FWPGPLTLVL + L+TA L T R+P + ++ +G + Sbjct: 84 TALRLAEAFWPGPLTLVLPKAPGCTVSDLATAGLDTVAVRIPAHPVAQAILRAFGGAVVA 143 Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197 PSANRSG +S T H+ + + I LI+DGG ++G+ESTI+ C +LRPGG Sbjct: 144 PSANRSGHVSPTTAAHV-RADLDGRIDLIVDGGPVEVGVESTILGC-CLGAPVLLRPGGA 201 Query: 198 EIETLKRAISVELEYCVDETS---TPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGN 254 E ++R + L + P +PGML SHYAP +QVRL A V P EAL+ FG Sbjct: 202 PREAIERLLGFALAEPAAAPAGDHAPLAPGMLASHYAPGAQVRLDARDVRPGEALLGFGP 261 Query: 255 VPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNR 314 V + E A NLS G L EAA +LF +++ D SGA +IA IP+ GLG AIN+R Sbjct: 262 VALPGAEAASAIRNLSPAGDLAEAAAHLFGFLRELDASGAQAIAVMPIPHQGLGEAINDR 321 Query: 315 LERAAAPRN 323 L RAAAPR+ Sbjct: 322 LRRAAAPRD 330 >gi|254488117|ref|ZP_05101322.1| Sua5/YciO/YrdC family protein [Roseobacter sp. GAI101] gi|214044986|gb|EEB85624.1| Sua5/YciO/YrdC family protein [Roseobacter sp. GAI101] Length = 357 Score = 227 bits (579), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 132/316 (41%), Positives = 188/316 (59%), Gaps = 14/316 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + +A L +G +AIPTETVYGLA D+ N A+ R+Y K RP+ NPLI H+++ Sbjct: 55 DLAGIDRAATLLRSGGLVAIPTETVYGLAADACNGAAVARIYAAKGRPSFNPLIVHLAET 114 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKK 126 +++ L+ LA FWPGPLTLVL L + L TA L + RVP + Sbjct: 115 QQARRYGLWSDLAEVLATAFWPGPLTLVLPLAPDHGLSSLVTAGLNSVAIRVPALDAAHQ 174 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 ++ +G P+A PSAN SG+IS T +H+L + +I ++D G +GLESTI+ + Sbjct: 175 VLTAFGGPVAAPSANPSGRISATTARHVL-DGLGGKIDAVLDAGPCPVGLESTIIGLHTP 233 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246 + +LR GGL +E ++ A+ LE + + +PG L SHYAP ++VRL A+ NP Sbjct: 234 RPT-LLRAGGLPVEAIEAALGEPLE--IANGAEIIAPGQLASHYAPNARVRLNALSANPG 290 Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306 E ++ FG P+ LNLS TG L EAA +LF+++ A D+ IA + +P+HG Sbjct: 291 EVMLGFG--PVDG------DLNLSPTGDLIEAAAHLFDHLH-ALDAMDKPIAVAPVPDHG 341 Query: 307 LGIAINNRLERAAAPR 322 LG AIN+RLERAAAPR Sbjct: 342 LGRAINDRLERAAAPR 357 >gi|310815072|ref|YP_003963036.1| Sua5/YciO/YrdC family protein [Ketogulonicigenium vulgare Y25] gi|308753807|gb|ADO41736.1| Sua5/YciO/YrdC family protein [Ketogulonicigenium vulgare Y25] Length = 321 Score = 227 bits (579), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 133/303 (43%), Positives = 178/303 (58%), Gaps = 12/303 (3%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81 G +A+PTETVYGLA D+ A+ +Y K RP+ NPLI HV+DI+ V A++ SL Sbjct: 29 GQQVAVPTETVYGLAADATCDDAVAGIYAAKGRPSFNPLIVHVADIADVAAFAALSGESL 88 Query: 82 HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140 LA+ FWPGPLTLVL L + I L TA L+T R+P + LI+ G PLA+PSA Sbjct: 89 ALAQAFWPGPLTLVLPLRADAPISKLVTAGLETVAVRLPAHPVARALIKAAGVPLAMPSA 148 Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200 N SG+IS T +H+L + I ++DGG S +G+ESTIV V +LR GG+ + Sbjct: 149 NPSGRISPTAAQHVL-DGLAGRIAAVVDGGPSGVGVESTIV-VAGRGDAIVLRAGGVTPD 206 Query: 201 TLKRAIS-VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKN 259 + + L + + + P +PG L SHYAP+ VRL A E ++ FG+V Sbjct: 207 EIAAVLGYAPLRPDLSDEARPNAPGQLLSHYAPKGHVRLNATTAAAGEVMLGFGDV---- 262 Query: 260 IENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 + L LS G L+EAA NLF D GA +IA + IP+ GLG+AIN+RL RAA Sbjct: 263 ----VGDLTLSARGDLREAAANLFACFHRLDAMGAMAIAVAPIPDTGLGLAINDRLRRAA 318 Query: 320 APR 322 APR Sbjct: 319 APR 321 >gi|288959229|ref|YP_003449570.1| translation factor [Azospirillum sp. B510] gi|288911537|dbj|BAI73026.1| translation factor [Azospirillum sp. B510] Length = 331 Score = 227 bits (578), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 128/318 (40%), Positives = 185/318 (58%), Gaps = 6/318 (1%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 T + L++A E L AG +A PTETVYGL D+ + A+ ++ K RP NPLI H+ D Sbjct: 19 TTAAGLKRAGELLRAGRLVAFPTETVYGLGADATDDRAVAAIFAAKGRPQFNPLIAHLPD 78 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTK 125 ++ + D +L LA FWPGPLT+V+ + + + L +A L + RVP + Sbjct: 79 LASAQSWGLFDERALDLAAQFWPGPLTMVVPRPANSALSLLVSAGLDSIAIRVPGHPVAQ 138 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 ++ G P+A PSANRSG +S T H+L S+ + + I+ GG +GLEST++++ Sbjct: 139 AILRAAGKPIAAPSANRSGAVSPTTPHHVL-ESLGERVDAIVTGGKCMVGLESTVIDLTG 197 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245 + V +LRPG + + ++R I + + + P+SPG L+SHYAP + VRL A Sbjct: 198 PEAV-LLRPGAVLPDEMERLIG-PVRLSAGDPTAPKSPGQLESHYAPDAAVRLNASSAAE 255 Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305 EA + FG P + + LNLS G L EAA NLF++++ D SGA IA IP Sbjct: 256 DEAFLTFG--PDRFVFGGATRLNLSLEGDLNEAAANLFSHLRSLDQSGAKRIAVMPIPEL 313 Query: 306 GLGIAINNRLERAAAPRN 323 GLG+AIN+RL RAAAPR Sbjct: 314 GLGLAINDRLRRAAAPRG 331 >gi|114767661|ref|ZP_01446371.1| Sua5/YciO/YrdC family protein [Pelagibaca bermudensis HTCC2601] gi|114540329|gb|EAU43423.1| Sua5/YciO/YrdC family protein [Roseovarius sp. HTCC2601] Length = 318 Score = 227 bits (578), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 133/318 (41%), Positives = 180/318 (56%), Gaps = 11/318 (3%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 D L + L +G +A PTETVYGL D+ N A+ R+YE K RP+ NPLI H++D Sbjct: 11 ADPEGLARGAGILRSGGLLAFPTETVYGLGGDACNDRAVARIYEAKGRPSFNPLIVHLAD 70 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + VK L+ A FWPGPLT+VL L + + L TA L + R+P + Sbjct: 71 LDAVKALVVWSDLAEAAAAAFWPGPLTMVLPLRESAKVSKLVTAGLDSLAVRMPANPVAR 130 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 L+ +G P+A PSANRSG+IS T +H+L ++ I ++DGG +GLESTI+ + Sbjct: 131 ALLAEFGGPVAAPSANRSGRISPTRAEHVL-DTLDGRIEGVLDGGRCDVGLESTILGLA- 188 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245 K +LRPG + I+ L + + + D +PG L SHYAPR++VRL A Sbjct: 189 -GKPTLLRPGRIGIDALSQVLGRPVMERKDREQI-SAPGQLSSHYAPRARVRLNAAEWQE 246 Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305 EA + FG LNLS +G L EAA NLF Y+ D GA +IA +P+ Sbjct: 247 GEARLGFGQT------EGDCDLNLSPSGDLVEAAANLFEYLHRLDADGAETIAVMPVPHV 300 Query: 306 GLGIAINNRLERAAAPRN 323 GLGIAIN+RL RAAAPR+ Sbjct: 301 GLGIAINDRLSRAAAPRD 318 >gi|94497450|ref|ZP_01304020.1| putative translation factor [Sphingomonas sp. SKA58] gi|94423081|gb|EAT08112.1| putative translation factor [Sphingomonas sp. SKA58] Length = 318 Score = 227 bits (578), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 129/313 (41%), Positives = 188/313 (60%), Gaps = 12/313 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +LR+A + AG P+A+PTETVYGLA D+ + A+ +Y K RP+ NPLI HV+ + Sbjct: 17 AESLREAALLIRAGEPVAVPTETVYGLAADATDNNAVAAIYSAKGRPSFNPLIVHVAHMD 76 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 M + A + + LA FWPGPLT+VL + + + + L TA L T R+P + L Sbjct: 77 MARSLAHLSTTAETLAAQFWPGPLTMVLPVRADSGLSHLVTAGLPTVALRLPAHPAMRAL 136 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I G PLA PSANRSG IS T +H+L +S+ ++ +++D G + GLESTI + + Sbjct: 137 IRESGRPLAAPSANRSGSISPTRAEHVL-ASLNGKVRMVLDEGPTSEGLESTIAAPEAD- 194 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 ++R+LRPG + L +A + + + + + ++PG L+SHYAP VRL A+ E Sbjct: 195 RIRLLRPGPVTAAMLGKATGLPVVVGLADAAI-EAPGQLESHYAPAKAVRLEALRAEADE 253 Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307 LI FG +P +NLS L+EA NLF + IAD S A+ IA + IP G+ Sbjct: 254 YLIGFGLMPCH--------INLSPEANLREAGANLFAALHIADASTAARIAVAPIPPEGI 305 Query: 308 GIAINNRLERAAA 320 G+AIN+RL+RAAA Sbjct: 306 GVAINDRLKRAAA 318 >gi|300023494|ref|YP_003756105.1| Sua5/YciO/YrdC/YwlC family protein [Hyphomicrobium denitrificans ATCC 51888] gi|299525315|gb|ADJ23784.1| Sua5/YciO/YrdC/YwlC family protein [Hyphomicrobium denitrificans ATCC 51888] Length = 315 Score = 226 bits (575), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 126/320 (39%), Positives = 187/320 (58%), Gaps = 12/320 (3%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 ++ + +A L +G +A PTETVYGL D+ N A+ R++ K RP+ NPLI HV + Sbjct: 4 NAEWIEEAGGLLRSGALVAFPTETVYGLGADATNGEAVARVFAAKGRPSFNPLIVHVLGL 63 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 S + L + FWPGPLTLV+ + TTD+ L +A L T R P ++ Sbjct: 64 EQAVIIGSFSATARRLTEAFWPGPLTLVVPRIETTDVSELVSAGLPTVALRSPDHPVARQ 123 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L++ P+A PSANRSG +S T +H+ ++ + +I+D G + GLEST+V++ Sbjct: 124 LLKAAQRPIAAPSANRSGHVSATRAEHV-AADLGDRAAVILDAGQTPRGLESTVVSLAGA 182 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246 V +LRPG + + +++ + ++ + SPG L+SHYAP S++RL A P Sbjct: 183 APV-LLRPGAISADAIEKVLGEKIARASESGEHLTSPGQLRSHYAPNSRIRLNATAWEPH 241 Query: 247 EALIRFGNV---PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303 EA++ FG V P K ++N+S +G L EAA NLF ++ D SGA++IA + IP Sbjct: 242 EAVLAFGAVEEHPSK------ATINISPSGDLIEAAANLFAALRKLDGSGAATIAVTPIP 295 Query: 304 NHGLGIAINNRLERAAAPRN 323 HGLG AIN+RL RAAAPR+ Sbjct: 296 AHGLGEAINDRLARAAAPRD 315 >gi|126728298|ref|ZP_01744114.1| Sua5/YciO/YrdC family protein [Sagittula stellata E-37] gi|126711263|gb|EBA10313.1| Sua5/YciO/YrdC family protein [Sagittula stellata E-37] Length = 328 Score = 225 bits (573), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 133/318 (41%), Positives = 178/318 (55%), Gaps = 13/318 (4%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + D L +A L G +A PTETVYGL D+R+ A+ +Y K RP+ NPLI H + Sbjct: 23 LPDPTGLARAASLLRDGRLVAFPTETVYGLGADARDDHAVAAIYAAKGRPSFNPLIVHFA 82 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 D+ +K + + +A+ FWPGPLTLVL L + L TA L T R+P Sbjct: 83 DLDALKPMVTWSDEAEAIAESFWPGPLTLVLPLREGARVSKLVTAGLDTIAVRMPAAPVA 142 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + L+ G P+A PSAN SGQIS T +H+ ++S+ + I+DGG K+GLESTI+ + Sbjct: 143 RDLLRAAGVPVAAPSANVSGQISPTRAEHV-AASLGDRVDAILDGGPCKVGLESTILGLA 201 Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244 + +LRPGG+ E L + + + T +PG +SHYAPR+ VRL AI Sbjct: 202 G--RPTLLRPGGITREALGHVLGRRIAER-HGSDTISAPGQTRSHYAPRAAVRLNAIEFE 258 Query: 245 PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPN 304 P EA + FG V LNLS +G L EAA NLF Y+ D IA S IP+ Sbjct: 259 PGEASLGFGEVEAD--------LNLSPSGDLTEAAANLFEYLHRLDAKAPKVIAISPIPH 310 Query: 305 HGLGIAINNRLERAAAPR 322 GLG+AIN+RL RAAA R Sbjct: 311 LGLGVAINDRLSRAAADR 328 >gi|126734644|ref|ZP_01750390.1| Sua5/YciO/YrdC family protein [Roseobacter sp. CCS2] gi|126715199|gb|EBA12064.1| Sua5/YciO/YrdC family protein [Roseobacter sp. CCS2] Length = 348 Score = 224 bits (572), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 134/316 (42%), Positives = 178/316 (56%), Gaps = 13/316 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L KA E L AG ++ PTETVYGL D+ N A+ R+YE K RP+ NPLI HV D+ Sbjct: 45 DVAGLEKAAEILRAGGLVSFPTETVYGLGADACNDRAVARIYEAKGRPSFNPLIVHVPDM 104 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + +++ + + LA+ FWPG LTLVL + + I L TA L T RVP Sbjct: 105 AAAERYCDFNETARQLAQAFWPGALTLVLPVKAEAGISKLVTAGLDTLAIRVPDHPVAGA 164 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+ + P+A PSAN SG +S T H+ ++ + I +IDGG +G+ESTIV+ C Sbjct: 165 LLSAFAGPVAAPSANPSGYVSPTMAAHV-AAGLGDRIDAVIDGGACLVGVESTIVS--CV 221 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246 +LR GG +E L+ + L D T +PG L SHYAP+ +VRL A + Sbjct: 222 GTPSLLRAGGTPVEVLEACLGRPLVASQD-PDTLTAPGQLASHYAPQGKVRLNAPYAQEG 280 Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306 E L+ FG V + LNLS G L +AA LF + D GA +IA S IP+HG Sbjct: 281 EVLLGFGPVEAE--------LNLSAAGDLTQAAARLFACLHELDAMGAKAIAVSPIPDHG 332 Query: 307 LGIAINNRLERAAAPR 322 LG AIN+RL+RA APR Sbjct: 333 LGRAINDRLKRAGAPR 348 >gi|83952430|ref|ZP_00961161.1| Sua5/YciO/YrdC family protein [Roseovarius nubinhibens ISM] gi|83836103|gb|EAP75401.1| Sua5/YciO/YrdC family protein [Roseovarius nubinhibens ISM] Length = 317 Score = 224 bits (571), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 131/312 (41%), Positives = 178/312 (57%), Gaps = 16/312 (5%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 R A D GL +A+PTETVYGL D+RN A+ R++E K RP NPLI HV I + Sbjct: 20 RAAAILRDGGL-VALPTETVYGLGGDARNDMAVARIFEAKGRPRFNPLIVHVDSIDRAQA 78 Query: 73 HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY 131 + + LA+ FWPGPLTLVL L + PL TA+L T R+P ++L+ + Sbjct: 79 YVHWSDQADRLAQAFWPGPLTLVLPLRDDAGLSPLVTADLPTLAIRLPAHPVAQRLLSEF 138 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 P+A PSAN SG+IS T H+L + + I ++DGG +GLESTI+ + + + Sbjct: 139 AGPVAAPSANPSGRISPTTADHVL-AGLGGRIAAVLDGGACDVGLESTILGLG--RSPTL 195 Query: 192 LRPGGLEIETLKRAISVELEYCVDETSTPQ-SPGMLKSHYAPRSQVRLRAIHVNPREALI 250 LRPGGL ++ A+ + L + T P +PG + SHYAP + VRL A P E + Sbjct: 196 LRPGGLPTGPIEAALGMALVH--HSTGDPLVAPGQMASHYAPGASVRLNARAAEPGELFL 253 Query: 251 RFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIA 310 FG P+ LNLS +G L EAA NLF ++ D IA + +P+ GLG+A Sbjct: 254 GFG--PMD------CDLNLSASGDLTEAAANLFGHLHALDARAPDGIAVAPVPDTGLGLA 305 Query: 311 INNRLERAAAPR 322 IN+RL RAAAPR Sbjct: 306 INDRLRRAAAPR 317 >gi|294011241|ref|YP_003544701.1| putative translation factor [Sphingobium japonicum UT26S] gi|292674571|dbj|BAI96089.1| putative translation factor [Sphingobium japonicum UT26S] Length = 318 Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 136/313 (43%), Positives = 186/313 (59%), Gaps = 12/313 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S ALR+A + AG P+A+PTETVYGLA D+ + A+ +Y K RP+ NPLI HV+D Sbjct: 17 SEALREAALLIRAGEPVAVPTETVYGLAADATDSNAVAAIYAAKGRPSFNPLIVHVADQE 76 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 M + A P++ LA+ FWPG LTLVL + + + PL A L T R+P + L Sbjct: 77 MAGRLAEFSPVADRLAERFWPGALTLVLPARADSGLSPLVMAGLPTVALRLPAHPAMRAL 136 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I G PLA PSANRSG IS T +H++ +S+ +I +I+D G + GLESTIV + + Sbjct: 137 IRESGRPLAAPSANRSGSISPTRAEHVM-ASLNGKIRMILDEGPTSEGLESTIVAPETD- 194 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 +R+LRPG + L+ A + + D T ++PG L+SHYAP VRL A+ E Sbjct: 195 CIRLLRPGPVTAAMLEEAGMLPVVTGADNTKI-EAPGQLESHYAPSKPVRLNALKAEKNE 253 Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307 LI FG +P +NLS L+EAA +LF + + D S A IA + IPN G+ Sbjct: 254 YLIGFGLMPCH--------VNLSPDADLREAAAHLFAALHMGDASAAERIAVAPIPNEGI 305 Query: 308 GIAINNRLERAAA 320 G+AIN+RL RAAA Sbjct: 306 GVAINDRLRRAAA 318 >gi|114569382|ref|YP_756062.1| translation factor SUA5 [Maricaulis maris MCS10] gi|114339844|gb|ABI65124.1| translation factor SUA5 [Maricaulis maris MCS10] Length = 327 Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 134/323 (41%), Positives = 181/323 (56%), Gaps = 13/323 (4%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 I +D + +A L AG +A+PTETVYGLA D+ N A+ RLY K RP NPLI Sbjct: 15 IKPASDPAVIEEAVAILKAGGLVAMPTETVYGLAADAGNADAVARLYAAKGRPRFNPLIA 74 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 HV+ +M + A L+ LA+ FWPGPLTLVL I ++ A L + R P Sbjct: 75 HVAGPNMAWRLAGWPDLADQLAESFWPGPLTLVLPKRPDAPIADIANAGLDSIALRAPRH 134 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 + LI + PL PSAN SG +S T H+ + + I LI+DGG +GLEST++ Sbjct: 135 AAAQALIRAFDGPLVAPSANPSGAVSPTTAAHV-AEGLGDRIDLILDGGACPVGLESTVI 193 Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241 + +LRPGGL ++ AI+ L D + +PGM+KSHYAP + +RL A Sbjct: 194 ALLGGTPT-LLRPGGLARRQIE-AITGRLADAGDGEAL-LAPGMMKSHYAPNAAMRLGAE 250 Query: 242 HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSS 301 P E L+ FG + LNLS+TG L EAA LF ++ D GA+ IA + Sbjct: 251 TAQPGEVLLGFGTI--------SGDLNLSETGDLAEAATGLFAALRTLDARGATRIAVAP 302 Query: 302 IPNHGLGIAINNRLERAAAPRNQ 324 IP+ GLG AIN+RL+RAAAP++ Sbjct: 303 IPDEGLGEAINDRLQRAAAPKDD 325 >gi|297183981|gb|ADI20101.1| putative translation factor (sua5) [uncultured alpha proteobacterium EB080_L06A09] Length = 318 Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 130/322 (40%), Positives = 190/322 (59%), Gaps = 16/322 (4%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 T+S+ A + L +G +A PTETVYGL D+ N A+ ++Y KKRP NPLI HV + Sbjct: 8 TNSDGYDTASKILQSGGLVAFPTETVYGLGADALNNNAVSKIYAAKKRPTFNPLIVHVLN 67 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + +K A D SL LA FWPGPLT+V + + ++ L TA L+T FRVP + Sbjct: 68 LETAQKFAIFDEDSLLLANKFWPGPLTIVAPIKADANLSKLITAGLETVAFRVPSHPVAR 127 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 KL++ + P+A PSAN SG IS TN H+ + + I I++GG +GLESTI+ + Sbjct: 128 KLLKEFDGPVAAPSANPSGSISSTNAIHV-KNGLNGRIQAILNGGKCNVGLESTII-LSK 185 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245 + ILR GG+ +++ + +L + S P +PG L SHYAP +++R+ A Sbjct: 186 SGECSILRSGGIPESEIEKVLGYKLSSSKNPDS-PIAPGQLSSHYAPNAKLRMNAEKAYD 244 Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDS----GASSIAFSS 301 E +I FG+V + LNLS G L EAA NLF+++ +AD+ G + IA + Sbjct: 245 DEYMIGFGDV--------VGQLNLSSQGDLTEAATNLFSFLHMADEDAITLGKTKIAVAP 296 Query: 302 IPNHGLGIAINNRLERAAAPRN 323 IP + LGIAIN+RL+RA+ P++ Sbjct: 297 IPMNDLGIAINDRLKRASTPKD 318 >gi|83945388|ref|ZP_00957736.1| Sua5/YciO/YrdC family protein [Oceanicaulis alexandrii HTCC2633] gi|83851222|gb|EAP89079.1| Sua5/YciO/YrdC family protein [Oceanicaulis alexandrii HTCC2633] Length = 327 Score = 223 bits (569), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 134/321 (41%), Positives = 177/321 (55%), Gaps = 6/321 (1%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 I+S TD AL +A L AG +A+PTETVYGLA D+ N A+ +YE K RP+ NPLIC Sbjct: 12 ILSATDPAALEEAARLLKAGGCVALPTETVYGLACDATNADAVAGVYEAKGRPSFNPLIC 71 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 HV + + +D LA FWPGPLTLV + + + L+ A L + R+P Sbjct: 72 HVDTVERARALIDLDETGEQLADAFWPGPLTLVASKRAPSPVSDLAAAGLDSLAVRLPRS 131 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 + L+ PLA PSAN SG IS T +H+ S+ I LI+DGG +G+ESTIV Sbjct: 132 EALRALVSRLDAPLAAPSANASGTISPTTAQHV-KDSLNGRIHLILDGGACPVGVESTIV 190 Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241 ++ + +LRPGG+ E L+ + P +PG L SHYAP + VRL A Sbjct: 191 SLLEPGRPTLLRPGGVAREQLETVCGALGRAGAANQAAPTAPGQLTSHYAPNASVRLNAT 250 Query: 242 HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSS 301 E+ + FG P + I+ NLS G L EAA NLF ++ DS + IA + Sbjct: 251 APLAGESYLGFGAQPES---DDIVFFNLSPKGDLVEAATNLFTALRWL-DSASDRIAVAP 306 Query: 302 IPNHGLGIAINNRLERAAAPR 322 IP GLG AIN+RL RAAA R Sbjct: 307 IPETGLGEAINDRLRRAAAER 327 >gi|170750228|ref|YP_001756488.1| Sua5/YciO/YrdC/YwlC family protein [Methylobacterium radiotolerans JCM 2831] gi|170656750|gb|ACB25805.1| Sua5/YciO/YrdC/YwlC family protein [Methylobacterium radiotolerans JCM 2831] Length = 332 Score = 223 bits (567), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 126/300 (42%), Positives = 168/300 (56%), Gaps = 4/300 (1%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 +A PTETVYGL D+ +P A+ ++ K RP NPLI H+ D D + LA Sbjct: 35 VAFPTETVYGLGADATDPAAVTGIFAAKARPRFNPLISHLPDAVAALAEGVFDAPARRLA 94 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANRS 143 + FWPGPLTLV+ + T + L A L + RVP + L+ G P+A PSAN S Sbjct: 95 EAFWPGPLTLVVPAHTGTRVCDLVRAGLPSLALRVPAHPLARDLLAEVGRPVAAPSANWS 154 Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203 G++S T H+L + I ++DGG + +G+EST+V R+LRPGG+ L+ Sbjct: 155 GRVSPTRAAHVLDD-LAGRISAVLDGGDTPVGVESTVVAC-LGGPPRLLRPGGITRAALR 212 Query: 204 RAISVELEYCVDETST-PQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIEN 262 + ++ + P PGML SHYAPR++VRL A+ V P EA + FG P E Sbjct: 213 DVLGLDPAAPEAADADRPAGPGMLASHYAPRARVRLDAVRVEPGEAALLFGPRPPAGHET 272 Query: 263 AIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 A SLNLS G EAA LF ++ D SGA +IA + IP GLG AI +RL RAAAPR Sbjct: 273 ARASLNLSPAGDPAEAAARLFGALRDLDASGAETIAVAPIPEDGLGEAIRDRLARAAAPR 332 >gi|294675961|ref|YP_003576576.1| Sua5/YciO/YrdC/YwlC family protein [Rhodobacter capsulatus SB 1003] gi|294474781|gb|ADE84169.1| Sua5/YciO/YrdC/YwlC family protein [Rhodobacter capsulatus SB 1003] Length = 319 Score = 223 bits (567), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 129/304 (42%), Positives = 171/304 (56%), Gaps = 17/304 (5%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 +A PTETVYGL D+R TA+ +Y K RP NPLI HV+D+ M ++ A + LA Sbjct: 28 VAFPTETVYGLGGDARQDTAVAAIYAAKGRPQFNPLIVHVADMEMAEQVAVFSDQARDLA 87 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANRS 143 FWPGPLTLVL I L TA L T R+P + L+ +G PLA PSAN S Sbjct: 88 ARFWPGPLTLVLPARPEAGISDLVTAGLATVAVRMPAHPVARALLAAFGGPLAAPSANPS 147 Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203 G++S T H+L + I ++DGG +G+ESTI+ + +LRPGG+++ETL+ Sbjct: 148 GKVSPTEADHVL-EGLSGRIAAVVDGGACPVGVESTILGLAPPV---LLRPGGVDVETLE 203 Query: 204 RAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENA 263 +A+ L + D P +PG L SHYAP + VRL A P E + FG P + Sbjct: 204 KALGQPLAFGGDAVK-PNAPGQLVSHYAPGAAVRLDATEKRPGEIYLGFGPGPEAD---- 258 Query: 264 IISLNLSKTGKLKEAAFNLFNYMKIADD----SGASSIAFSSIPNHGLGIAINNRLERAA 319 L LS EAA LF +++AD GA++IA + IP GLG AIN+RL RAA Sbjct: 259 ---LTLSVRADPVEAATRLFAMLRVADKLATARGAATIAIAPIPETGLGRAINDRLRRAA 315 Query: 320 APRN 323 APR Sbjct: 316 APRG 319 >gi|259415145|ref|ZP_05739067.1| translation factor SUA5 [Silicibacter sp. TrichCH4B] gi|259349055|gb|EEW60809.1| translation factor SUA5 [Silicibacter sp. TrichCH4B] Length = 319 Score = 222 bits (566), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 132/315 (41%), Positives = 177/315 (56%), Gaps = 15/315 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E L AG +A PTETVYGL D+ N A+ +Y K RP+ NPLI HV+D++ + Sbjct: 18 IARAAELLAAGQLVAFPTETVYGLGADATNGAAVAAIYATKGRPSFNPLIAHVADVAAAQ 77 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIET 130 + + +A FWPGPLTLVL L + PL TA L T RVP + L+ Sbjct: 78 TLVQWNEWAEAMAAAFWPGPLTLVLPLRPDHPVSPLVTAGLDTLAVRVPAKACARDLLAA 137 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 P+A PSAN SG+IS T H+ + + +I I+D G +G+ESTI+ + + V Sbjct: 138 VARPIAAPSANPSGRISPTTAAHV-RAGLGGKIAAILDDGPCGVGVESTILGLAGDAPV- 195 Query: 191 ILRPGGLEIETLKRAISVEL-EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREAL 249 +LRPGGL E ++ A+ L E + T +PG L+SHYAP + VRL A P E Sbjct: 196 LLRPGGLAAEDIEAALGCPLAERNAADPLT--APGQLQSHYAPNASVRLAARDFAPGEVS 253 Query: 250 IRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGI 309 + FG LNLS +G L EAA NLF Y+ D+ IA + +P HGLGI Sbjct: 254 LGFG--------PGAFDLNLSPSGDLNEAAANLFGYLHQL-DAMERPIAVAPVPEHGLGI 304 Query: 310 AINNRLERAAAPRNQ 324 AIN+RL RAAAPR+ Sbjct: 305 AINDRLRRAAAPRDS 319 >gi|312114717|ref|YP_004012313.1| Sua5/YciO/YrdC/YwlC family protein [Rhodomicrobium vannielii ATCC 17100] gi|311219846|gb|ADP71214.1| Sua5/YciO/YrdC/YwlC family protein [Rhodomicrobium vannielii ATCC 17100] Length = 320 Score = 221 bits (564), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 136/318 (42%), Positives = 177/318 (55%), Gaps = 15/318 (4%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 D A+ +A L +G +A PTETVYGL D+ N A+ R++E K RP NPLI HV D Sbjct: 5 ADGTAIERAAHILRSGGLVAFPTETVYGLGADATNGVAVARIFEAKGRPRFNPLIVHVPD 64 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS---TANLKTACFRVPCG- 122 ++ A D + LA FWPGPLTLVL L + PLS TA L T RVP Sbjct: 65 ADAARRFAVFDAEADALAARFWPGPLTLVLPLRRDVE-QPLSDLVTAGLDTVAIRVPHHP 123 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 + L+E G P+A PSAN SG+IS T H+ + I + +I+DGG + GLESTIV Sbjct: 124 VARALLEAAGVPVAAPSANISGRISPTRAAHV-AEDIGARVNMILDGGAADAGLESTIVA 182 Query: 183 VQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242 ++ + +LRPG + E ++ A+ L E +PG L SHYAP + VRL A Sbjct: 183 LK--PRPTMLRPGAVAREDVEAALGAPLADR-GEGDGVTAPGQLASHYAPNASVRLHASE 239 Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302 P E L+ FG KN ++NLS+ G L+EAA NLF ++ D IA I Sbjct: 240 ARPGETLLGFGPAAPKN------AMNLSRAGDLREAAANLFACLRALDAEKPGRIAVMPI 293 Query: 303 PNHGLGIAINNRLERAAA 320 P+ GLG AIN+RL RAAA Sbjct: 294 PDKGLGEAINDRLRRAAA 311 >gi|297717892|gb|ADI50089.1| hypothetical protein [Candidatus Odyssella thessalonicensis L13] Length = 310 Score = 221 bits (564), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 128/310 (41%), Positives = 181/310 (58%), Gaps = 16/310 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +ACE L +G +AIPTETVYGLA D+ N A+ ++Y IK+RP NPLI H K Sbjct: 12 LSQACELLSSGDVVAIPTETVYGLAADATNDKAVAKIYAIKQRPEFNPLIIHCHSAQQAK 71 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 + D + LA FWPGP+T VL + I L+++ L+T R+P + LI+ Sbjct: 72 SYVQFDKRAEKLADAFWPGPITFVLKRYPDSAISFLASSGLETLAVRIPAHPVAQALIKA 131 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 Y PLA PSAN S IS T+ + +S+ +PLIIDGG +++G+ESTI+++ E Sbjct: 132 YSKPLAAPSANLSQTISPTSAIDV-QASLGNRVPLIIDGGQTRVGVESTIIDL-TEAIPH 189 Query: 191 ILRPGGLEIETLKRAI-SVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREAL 249 ILRPGG+ +E ++ I +V+L + ++PGM+ HYAP +RL A E Sbjct: 190 ILRPGGISVEQIQAVIGTVDLS----RRAGIKAPGMMARHYAPSVPMRLNAAAPLKGELF 245 Query: 250 IRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGI 309 + FG++ NLS +G L+EAA NLF M++ D + IA + IP HGLG+ Sbjct: 246 LGFGSMD--------CDYNLSPSGNLEEAAANLFRMMRLMDRQNIAGIAVAPIPKHGLGL 297 Query: 310 AINNRLERAA 319 AIN+RL RAA Sbjct: 298 AINDRLMRAA 307 >gi|146339104|ref|YP_001204152.1| hypothetical protein BRADO2058 [Bradyrhizobium sp. ORS278] gi|146191910|emb|CAL75915.1| conserved hypothetical protein containing Sua5/YciO/YrdC/YwlC domains [Bradyrhizobium sp. ORS278] Length = 333 Score = 221 bits (564), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 140/310 (45%), Positives = 179/310 (57%), Gaps = 9/310 (2%) Query: 18 FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77 F GL +A PTETVYGL D+ N AI LY+ K RPA NPLI HV+D + ++ D Sbjct: 28 FARGGL-VAFPTETVYGLGADAANAAAIAHLYQAKGRPAFNPLIAHVADAAAARRIGRFD 86 Query: 78 PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGHPLA 136 + LA FWPGPLTLV+ + L+TA L T RVP T + L+ +G + Sbjct: 87 ATAERLAAAFWPGPLTLVVPQADQCPVADLATAGLDTVAIRVPAHPTARALLAAFGGAVV 146 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SG +S T H+ ++ + I LI+DGG +G+ESTI+ C + +LRPGG Sbjct: 147 APSANISGHVSPTTAAHV-AADLSGRIDLILDGGAVDVGVESTIIG--CFAEPTLLRPGG 203 Query: 197 LEIETLKRAISVEL-EYCVDET---STPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRF 252 + E ++ + L V E P +PGML SHYAP + VRL A +V P EAL+ F Sbjct: 204 VPSEAIEAVLGQPLARLAVAEAHAAEQPLAPGMLASHYAPHAAVRLDATNVAPDEALLAF 263 Query: 253 GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAIN 312 G V + A LNLS G EAA +LF Y++ D SGA SIA IPN GLG AIN Sbjct: 264 GPVTLPGAAQAAAILNLSPVGDPAEAATHLFGYLRSLDASGARSIAVMPIPNDGLGEAIN 323 Query: 313 NRLERAAAPR 322 +RL RAAAPR Sbjct: 324 DRLRRAAAPR 333 >gi|99078038|ref|YP_611296.1| translation factor SUA5 [Ruegeria sp. TM1040] gi|99035176|gb|ABF62034.1| Sua5/YciO/YrdC/YwlC [Ruegeria sp. TM1040] Length = 323 Score = 220 bits (561), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 129/309 (41%), Positives = 174/309 (56%), Gaps = 13/309 (4%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 E L AG +A PTETVYGL D+ N A+ +Y K RP+ NPLI HV+D+ ++ Sbjct: 27 ELLTAGQLVAFPTETVYGLGADATNGAAVAAIYATKGRPSFNPLIAHVADVRAARRLVQW 86 Query: 77 DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPL 135 + + +A FWPGPLTLVL L ++ PL TA L T RVP +++L+ G P+ Sbjct: 87 NDWAEAMATAFWPGPLTLVLPLRPDHNVSPLVTAGLDTLAVRVPAKACSRELLAAVGRPV 146 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 A PSAN SG+IS T H+ + + +I I+D G +G+ESTI+ + + +LRPG Sbjct: 147 AAPSANPSGRISPTTADHV-RAGLGGKIAAILDDGPCGVGVESTILGLAGAAPI-LLRPG 204 Query: 196 GLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNV 255 GL E ++ A+ L E +PG L SHYAP + VRL A +P E + FG Sbjct: 205 GLAAEDIEHALGCTL-MTRAEADPLTAPGQLMSHYAPNASVRLEAQDFSPDEVSLGFG-- 261 Query: 256 PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRL 315 LNLS +G L EAA NLF ++ D G IA + +P GLGIAIN+RL Sbjct: 262 ------PGDFDLNLSPSGDLNEAAANLFGHLHHLDALG-RPIAVAPVPERGLGIAINDRL 314 Query: 316 ERAAAPRNQ 324 RAAAPR+ Sbjct: 315 RRAAAPRDS 323 >gi|307294299|ref|ZP_07574143.1| Sua5/YciO/YrdC/YwlC family protein [Sphingobium chlorophenolicum L-1] gi|306880450|gb|EFN11667.1| Sua5/YciO/YrdC/YwlC family protein [Sphingobium chlorophenolicum L-1] Length = 318 Score = 220 bits (561), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 136/313 (43%), Positives = 185/313 (59%), Gaps = 12/313 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S ALR+A + AG P+A+PTETVYGLA D+ + A+ +Y K RP+ NPLI HVSD Sbjct: 17 SEALREAALLIRAGEPVAVPTETVYGLAADATDSNAVAAIYTAKGRPSFNPLIVHVSDRE 76 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 M + A P++ LA FWPG LTLVL + + + + PL A L T R+P + L Sbjct: 77 MAGRLAEFSPVADRLADRFWPGALTLVLPVRADSGLSPLVMAGLPTVALRLPAHPAMRAL 136 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I G PLA PSANRSG IS T +H+L +S+ +I +I+D G + GLESTI + + Sbjct: 137 IRESGRPLAAPSANRSGSISPTRAEHVL-ASLNGKIRMILDEGPTSEGLESTIAAPESD- 194 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 ++R+LRPG + L+ A + + D ++PG L+SHYAP VRL A+ E Sbjct: 195 RIRLLRPGPVTAAMLEEASRLPVVAGADNGKI-EAPGQLESHYAPSKPVRLNALKAEKDE 253 Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307 LI FG +P +NLS L+EAA +LF + +AD S A IA + I N G+ Sbjct: 254 YLIGFGLMPCH--------VNLSPDADLREAAAHLFAALHMADASTAERIAVAPILNEGI 305 Query: 308 GIAINNRLERAAA 320 G+AIN+RL RAAA Sbjct: 306 GVAINDRLRRAAA 318 >gi|323137611|ref|ZP_08072688.1| Sua5/YciO/YrdC/YwlC family protein [Methylocystis sp. ATCC 49242] gi|322397237|gb|EFX99761.1| Sua5/YciO/YrdC/YwlC family protein [Methylocystis sp. ATCC 49242] Length = 321 Score = 220 bits (560), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 120/299 (40%), Positives = 171/299 (57%), Gaps = 5/299 (1%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 +A PTETVYGL D+ N A+ R+Y+ K RP+ NPLI H++DI ++ A + +L LA Sbjct: 25 VAFPTETVYGLGADATNAWAVARIYDAKGRPSFNPLIAHIADIESARREALLPEAALRLA 84 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRS 143 + FWPGPLT+V + + L+ A L + R+P + LI G P+A PSANRS Sbjct: 85 EAFWPGPLTIVAPVAPGGSVCELARAGLPSVALRIPDHPVAQALIAALGRPIAAPSANRS 144 Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203 G +S H+ + + + +I+DGG + GLESTIV+ CE +LRPG + E ++ Sbjct: 145 GHVSPVTAAHV-AEDLSGRVEMILDGGRTTAGLESTIVSF-CEATPILLRPGAISREAIE 202 Query: 204 RAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENA 263 + + +L + +PGM SHYAP +++RL A + P E + FG Sbjct: 203 KVLGEKL--AAPARAEVLAPGMTASHYAPDARLRLEAHELEPGEGALDFGGRLTALAPPG 260 Query: 264 IISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 L+LS G L EAA NLF Y++ D G S+A + IP GLG AIN+RL RA+APR Sbjct: 261 ATVLDLSPVGDLVEAAANLFAYLREFDARGVRSVAVAHIPERGLGEAINDRLRRASAPR 319 >gi|23012172|ref|ZP_00052324.1| COG0009: Putative translation factor (SUA5) [Magnetospirillum magnetotacticum MS-1] Length = 329 Score = 220 bits (560), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 121/297 (40%), Positives = 168/297 (56%), Gaps = 5/297 (1%) Query: 28 PTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLF 87 PTETVYGL D+ +P A+ +Y K RP NPLI HV+ D + LA F Sbjct: 36 PTETVYGLGADATDPEAVAAIYAAKGRPHFNPLIAHVATHEAALAEGVFDAAAQLLATAF 95 Query: 88 WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANRSGQI 146 WPGPLTLV+ + + L+ A L + RVP G + L+ G P+A PSANRSG++ Sbjct: 96 WPGPLTLVVPVSPGGSVCELARAGLDSVALRVPAHGLARDLLARVGRPVAAPSANRSGRV 155 Query: 147 SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV-RILRPGGLEIETLKRA 205 S T+ H+L+ + I ++DGG +G+ES++V C R+LRPGG+ E + Sbjct: 156 SPTSADHVLAD-LDGRIDAVLDGGECPVGVESSVV--ACLGGTPRLLRPGGVTREAIAAL 212 Query: 206 ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAII 265 + + D + P PG+L SHYAPR+ VRL A + P EA + FG + ++ A Sbjct: 213 LGFDPAAAGDPGAQPVGPGLLASHYAPRAGVRLDATAIAPGEAALLFGAFRPEGLKRAAA 272 Query: 266 SLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 +LS+ G EAA LF ++ D SGA+ IA + +P GLG AIN+RL RAAAPR Sbjct: 273 VESLSERGDPAEAAARLFGALRRLDASGAAVIAVAPVPGEGLGEAINDRLRRAAAPR 329 >gi|27377681|ref|NP_769210.1| hypothetical protein bll2570 [Bradyrhizobium japonicum USDA 110] gi|27350826|dbj|BAC47835.1| bll2570 [Bradyrhizobium japonicum USDA 110] Length = 329 Score = 219 bits (559), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 134/304 (44%), Positives = 173/304 (56%), Gaps = 10/304 (3%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 +A TETVYGL D+ N TAI LY K RPA NPLI HV+DI+ + D +L LA Sbjct: 30 VAFATETVYGLGADAANATAIAHLYAAKGRPAFNPLIAHVADITAAQAIGRFDARALKLA 89 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRS 143 + FWPGPLTLV+ + L+TA L T R+P + ++ +G + PSAN S Sbjct: 90 EAFWPGPLTLVVPKTDGCPVADLATAGLDTVAIRIPAHPVAQAILRAFGGAVVAPSANIS 149 Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203 G +S T H+ S + I LI+DGG +G+ESTIV C +LRPGGL E ++ Sbjct: 150 GHVSPTLAAHV-ESDLSGRIDLIVDGGPVAVGVESTIVG--CLNAPMLLRPGGLSRERIE 206 Query: 204 RAISVEL-----EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIK 258 + L E D+ S P +PGML SHYAPR+ VRL A V P EAL+ FG + Sbjct: 207 AVLGAALARPPAEAGSDD-SQPLAPGMLASHYAPRANVRLNAREVAPGEALLAFGPSRLP 265 Query: 259 NIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERA 318 ++ A +NLS T L EAA NLF Y++ D G +IA +IP LG AIN+RL RA Sbjct: 266 GLDAAAAVMNLSPTADLDEAAANLFGYLRALDAKGPRAIAVMTIPEDDLGEAINDRLRRA 325 Query: 319 AAPR 322 A R Sbjct: 326 AVAR 329 >gi|258541814|ref|YP_003187247.1| translation modulator Sua5/YciO/YrdC/YwlC [Acetobacter pasteurianus IFO 3283-01] gi|256632892|dbj|BAH98867.1| translation modulator Sua5/YciO/YrdC/YwlC [Acetobacter pasteurianus IFO 3283-01] gi|256635949|dbj|BAI01918.1| translation modulator Sua5/YciO/YrdC/YwlC [Acetobacter pasteurianus IFO 3283-03] gi|256639004|dbj|BAI04966.1| translation modulator Sua5/YciO/YrdC/YwlC [Acetobacter pasteurianus IFO 3283-07] gi|256642058|dbj|BAI08013.1| translation modulator Sua5/YciO/YrdC/YwlC [Acetobacter pasteurianus IFO 3283-22] gi|256645113|dbj|BAI11061.1| translation modulator Sua5/YciO/YrdC/YwlC [Acetobacter pasteurianus IFO 3283-26] gi|256648168|dbj|BAI14109.1| translation modulator Sua5/YciO/YrdC/YwlC [Acetobacter pasteurianus IFO 3283-32] gi|256651221|dbj|BAI17155.1| translation modulator Sua5/YciO/YrdC/YwlC [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654212|dbj|BAI20139.1| translation modulator Sua5/YciO/YrdC/YwlC [Acetobacter pasteurianus IFO 3283-12] Length = 333 Score = 219 bits (559), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 125/312 (40%), Positives = 173/312 (55%), Gaps = 9/312 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S+ L+ A L G +A TETVYGL D+ P + R++E K RP NPLI H +D Sbjct: 9 SSGLQTAARILREGGLVAFGTETVYGLGGDATQPKTVARIFEAKNRPRFNPLISHFADAQ 68 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKL 127 +PL+ LA FWPGPLTL+L + + L+ L T RVP G T + L Sbjct: 69 AAFTQVVANPLAHKLADTFWPGPLTLILPRAPHSTVSDLAADGLPTLAVRVPKGETVQAL 128 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ P+A PSANRSG+IS ++ H+L + I ++D G ++G+EST++++ + Sbjct: 129 LKLVQRPIAAPSANRSGRISPSDAAHVL-EELDGRIDAVLDSGPCQVGVESTVLDISNPE 187 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 + +LRPGG+ +E L+ + + P SPG L SHYAP VRL A V P E Sbjct: 188 RPTLLRPGGITLEALQAVCGTIFMPETEVDAAPASPGRLLSHYAPHLPVRLNATDVAPDE 247 Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS----SIAFSSIP 303 AL+ FGN A IS NLS++G L+EAA LF ++ D G S IA IP Sbjct: 248 ALLAFGNT---QPSEAAISWNLSESGNLEEAAARLFTGLRTLDKQGQSHHLRGIAVQPIP 304 Query: 304 NHGLGIAINNRL 315 HGLG+AI +RL Sbjct: 305 QHGLGLAIQDRL 316 >gi|163745661|ref|ZP_02153021.1| Sua5/YciO/YrdC family protein [Oceanibulbus indolifex HEL-45] gi|161382479|gb|EDQ06888.1| Sua5/YciO/YrdC family protein [Oceanibulbus indolifex HEL-45] Length = 310 Score = 219 bits (558), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 130/314 (41%), Positives = 178/314 (56%), Gaps = 14/314 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + +A L G +A+PTETVYGL D+RN A+ +Y K RP+ NPLI H+ DI Sbjct: 10 QGIARAARLLQDGALVALPTETVYGLGADARNGAAVAGIYAAKGRPSFNPLIVHLPDIET 69 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 K++ + LA+ FWPG LTLVL L + + L TA L + RVP ++++ Sbjct: 70 AKRYVQWTDEADRLAQAFWPGALTLVLPLRPDSGLSSLVTAGLASLAVRVPAHPAMRQVL 129 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 + P+A PSAN SG+IS T H+L + + +I ++D G +GLESTI+ + + Sbjct: 130 QALDGPVAAPSANPSGKISATTAAHVL-AGLDGKIAAVLDDGACSVGLESTIIGLTGPRP 188 Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248 +LR GGL E ++ + LE VD +PG L SHYAP + VRL A P E Sbjct: 189 A-LLRAGGLPSEAIEAVLGQTLE-IVDGAEI-IAPGQLASHYAPGAAVRLDAETAGPGEV 245 Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLG 308 L+ FG + I LNLS G L EAA NLF+++ D +G IA + IP+HGLG Sbjct: 246 LLGFGTM--------ICDLNLSPAGDLTEAAANLFDHLHQLDATG-QQIAVAPIPDHGLG 296 Query: 309 IAINNRLERAAAPR 322 AIN+RL RAAAPR Sbjct: 297 RAINDRLARAAAPR 310 >gi|126726057|ref|ZP_01741899.1| Putative translation factor [Rhodobacterales bacterium HTCC2150] gi|126705261|gb|EBA04352.1| Putative translation factor [Rhodobacterales bacterium HTCC2150] Length = 320 Score = 219 bits (558), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 131/325 (40%), Positives = 184/325 (56%), Gaps = 13/325 (4%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 QI+S D+ L + L G +A PTETVYGL D+RN A+ ++ K RP+ NPLI Sbjct: 4 QILSANDAG-LSLSSLILQRGGLVAFPTETVYGLGADARNDKAVAAIFAAKGRPSFNPLI 62 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 HV + + A PL+ LA+ FWPGPL+LVL LL + L +A + + R+P Sbjct: 63 VHVQSLPAATEFADFSPLAFKLAQAFWPGPLSLVLPLLKGGQLSHLVSAGMPSVAIRIPA 122 Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 + L++ +G P+A PSAN SGQIS T H+ ++ + I I+DGG+ +G+ESTI Sbjct: 123 HPVAQGLLQVFGGPIAAPSANPSGQISPTTPGHV-TAGLKDRIDAILDGGLCSVGVESTI 181 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 + V + V +LRPGG+ +E + + I +ET+ SPG L SHYAP++ + L Sbjct: 182 LGV-SDDDVTLLRPGGISVEQIAKVIGFTPTLTTNETTP-NSPGQLLSHYAPKADIVLNV 239 Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD--DSGASSIA 298 P + FGN A +LNLS G L EAA NLF ++ D + IA Sbjct: 240 TDPEPEMMSLGFGNA------IAHPTLNLSPKGDLTEAAANLFAHLHALDAMANAGQCIA 293 Query: 299 FSSIPNHGLGIAINNRLERAAAPRN 323 + IP GLG+AIN+RL RAAAPR+ Sbjct: 294 VAPIPMTGLGLAINDRLTRAAAPRD 318 >gi|197104025|ref|YP_002129402.1| Sua5/YciO/YrdC family protein [Phenylobacterium zucineum HLK1] gi|196477445|gb|ACG76973.1| Sua5/YciO/YrdC family protein [Phenylobacterium zucineum HLK1] Length = 307 Score = 219 bits (557), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 135/317 (42%), Positives = 177/317 (55%), Gaps = 15/317 (4%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 M TD + A + L AG + +PTETVYGLA D+ NP A+ +YE K RP+ NPLI H Sbjct: 1 MDPTDPH---TAAQALKAGGLVLMPTETVYGLAADAANPRAVAAVYEAKGRPSFNPLISH 57 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-G 122 V+D+ M ++ A DP + L FWPGPLTLVL T + L+ A L T R P Sbjct: 58 VADVGMARRIARFDPRAEALTARFWPGPLTLVLPAADTAAVCDLARAGLDTVAVRAPAHP 117 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 + L++ +G P+ PSANRSG+ S T L + +DGG ++GLEST+V Sbjct: 118 LARALLQAFGGPVVAPSANRSGRPSPTTFAAALEETGYAAA-AALDGGPCEVGLESTVVA 176 Query: 183 VQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242 + E R+LRPG + ++ I E D +SPG L HYAP VRL A Sbjct: 177 LLDE--ARLLRPGAVTRAEIEAVIGPLAEAEADAR---RSPGRLARHYAPDLPVRLDAAA 231 Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302 EA + FG P + NLS +G LKEAA NLF ++ AD SGAS+IA + I Sbjct: 232 PAAGEAFLAFGPAP-----ETARTFNLSPSGDLKEAAANLFAMLRAADRSGASAIAVAPI 286 Query: 303 PNHGLGIAINNRLERAA 319 P+ GLG AIN+RL+RAA Sbjct: 287 PHEGLGEAINDRLKRAA 303 >gi|260431590|ref|ZP_05785561.1| Sua5/YciO/YrdC family protein [Silicibacter lacuscaerulensis ITI-1157] gi|260415418|gb|EEX08677.1| Sua5/YciO/YrdC family protein [Silicibacter lacuscaerulensis ITI-1157] Length = 316 Score = 218 bits (556), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 134/308 (43%), Positives = 169/308 (54%), Gaps = 14/308 (4%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 E L GL +A PTETVYGL D+RN A+ +Y K RP+ NPLI HV+ + ++H Sbjct: 21 ELLRQGLLVAFPTETVYGLGADARNGEAVAAIYAAKGRPSFNPLIAHVASVEAAQRHVEW 80 Query: 77 DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPL 135 + LA FWPGPLTLVL L + + L TA L T RVP T + L+ P+ Sbjct: 81 SDQAQQLADAFWPGPLTLVLPLRAGHGVSSLVTAGLDTLAVRVPAHPTAQALLRAVDGPV 140 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 A PSAN SG+IS T H+ + I I+D G +GLESTIV + +LRPG Sbjct: 141 AAPSANPSGRISPTTAAHV-REGLDGRIAAILDDGPCAVGLESTIVGLAGTPA--LLRPG 197 Query: 196 GLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNV 255 G+ E ++ + +L + +PG L+SHYAP + VRL A E L+ FG V Sbjct: 198 GVAAEQIEAVLGTKLSHH-KPGDLLTAPGQLQSHYAPDAPVRLNAEQRRGDEVLLGFGPV 256 Query: 256 PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRL 315 LNLS+ G L EAA NLF + D SG IA S IP HGLG AIN+RL Sbjct: 257 --------ACDLNLSERGDLLEAAANLFASLHELDKSG-RPIAVSPIPGHGLGAAINDRL 307 Query: 316 ERAAAPRN 323 RAAAPRN Sbjct: 308 RRAAAPRN 315 >gi|217976634|ref|YP_002360781.1| Sua5/YciO/YrdC/YwlC family protein [Methylocella silvestris BL2] gi|217502010|gb|ACK49419.1| Sua5/YciO/YrdC/YwlC family protein [Methylocella silvestris BL2] Length = 328 Score = 218 bits (554), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 129/317 (40%), Positives = 181/317 (57%), Gaps = 8/317 (2%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 ++ L + L A +A PTETVYGL D+ A+ R+Y K RPA NPLI HV+ Sbjct: 18 ANAAGLAEGARLLQAEKLVAFPTETVYGLGADASCDAAVARIYAAKGRPAFNPLISHVAS 77 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTK 125 ++ +H + LA+ FWPGPLTLVL + +T + L+ A +T RVP Sbjct: 78 LAEASRHGIFSAAARRLAETFWPGPLTLVLPVAATNRVCELARAGRRTVALRVPAHKDAL 137 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LI G P+A PSANRSG++S +H+ + + E+ LI+DGG +G+ESTIV Sbjct: 138 ALIAAAGLPIAAPSANRSGRVSPVTARHV-AEDLGDEVDLILDGGACHVGVESTIVACLG 196 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245 E ++LRPGGL ++ A+ + L + +S +PG L SHYAPR+ VRL A + P Sbjct: 197 ETP-QLLRPGGLSRAVIEEALGLALP-AREASSEIVAPGALASHYAPRALVRLDAEKLEP 254 Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305 EA + FG +L+LS L EAA NLF +++ D G ++IA + IP Sbjct: 255 GEAGLDFGG----RFTRGPATLDLSPAADLDEAAANLFAFLRELDAGGPAAIAVAPIPRS 310 Query: 306 GLGIAINNRLERAAAPR 322 G+G AIN+RL+RAAAPR Sbjct: 311 GIGEAINDRLKRAAAPR 327 >gi|254512404|ref|ZP_05124471.1| Sua5/YciO/YrdC family protein [Rhodobacteraceae bacterium KLH11] gi|221536115|gb|EEE39103.1| Sua5/YciO/YrdC family protein [Rhodobacteraceae bacterium KLH11] Length = 315 Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 130/317 (41%), Positives = 175/317 (55%), Gaps = 14/317 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + +A + L GL +A PTETVYGL D+RN A+ +Y+ K RP+ NPLI HV Sbjct: 12 DPAGIARAADLLRQGLLVAFPTETVYGLGGDARNGNAVAAIYQAKGRPSFNPLIAHVDSA 71 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KK 126 ++ + LA FWPGPLTLVL L + L TA L T RVP T + Sbjct: 72 QTAQRFVEWSDQAEQLATAFWPGPLTLVLPLREGHGMSSLVTAGLDTLAVRVPAHPTARA 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+ + P+A PSAN SGQIS T H+ + + I ++D G +GLESTIV + + Sbjct: 132 LLAAFDGPVAAPSANPSGQISPTTAAHV-RAGLGGRIAAVLDDGPCGVGLESTIVGLTGD 190 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246 +LRPGG+ +E ++ + +L + +PG ++SHYAP + VRL A Sbjct: 191 PA--LLRPGGVALEQIEDTLQTKLHHH-QSGDLLTAPGQMQSHYAPDAPVRLNARSRRGD 247 Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306 E L+ FG V LNLS++G L EAA NLF + + +G IA S IP+HG Sbjct: 248 EVLLGFGPV--------ACDLNLSESGDLPEAASNLFAALHDLNSTG-RPIAVSPIPDHG 298 Query: 307 LGIAINNRLERAAAPRN 323 LG AIN+RL RAAAPR Sbjct: 299 LGAAINDRLRRAAAPRG 315 >gi|126740572|ref|ZP_01756259.1| Sua5/YciO/YrdC family protein [Roseobacter sp. SK209-2-6] gi|126718373|gb|EBA15088.1| Sua5/YciO/YrdC family protein [Roseobacter sp. SK209-2-6] Length = 324 Score = 217 bits (552), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 132/318 (41%), Positives = 176/318 (55%), Gaps = 9/318 (2%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 D L +A + L AG ++ TETVYGL D+R A+ +Y K RP+ NPLI H + Sbjct: 15 ADPAGLTRAAQLLQAGELVSFATETVYGLGADARQGEAVAAIYAAKGRPSFNPLIVHAAS 74 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 +++ + + LA+ FWPGPLTLVL L I L TA L+T RVP + Sbjct: 75 AEAAQRYVLWNGWAEVLAQAFWPGPLTLVLPLRPKHGISGLVTAGLETLAVRVPAQPSAQ 134 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +L++ + P+A PSAN SG+IS T H+ + + I I+D G +GLESTIV + Sbjct: 135 RLLQIFDGPVAAPSANPSGRISPTLASHVF-AGLNGRIAAIVDDGACGVGLESTIVGLAG 193 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245 E + +LRPGGL E ++ A+ L D +PG L SHYAP QVRL A Sbjct: 194 EAPI-LLRPGGLAAEEIEEALGQPLRQR-DVQDPLTAPGQLLSHYAPNEQVRLNAAAARN 251 Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305 E + FG E+ LNLS GKL EAA +LF+Y+ D G IA + IP+ Sbjct: 252 GEVFLGFGAHQGSGPED----LNLSPDGKLTEAAAHLFDYLHQLDGLG-RPIAVAPIPDE 306 Query: 306 GLGIAINNRLERAAAPRN 323 GLG AIN+RL RAAAPR+ Sbjct: 307 GLGAAINDRLARAAAPRD 324 >gi|254476620|ref|ZP_05090006.1| Sua5/YciO/YrdC family protein [Ruegeria sp. R11] gi|214030863|gb|EEB71698.1| Sua5/YciO/YrdC family protein [Ruegeria sp. R11] Length = 315 Score = 216 bits (551), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 132/312 (42%), Positives = 174/312 (55%), Gaps = 13/312 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +R+A L G +A PTETVYGL D+R A+ LY K RP+ NPLI HV I K Sbjct: 16 IRQAAALLQDGQLVAFPTETVYGLGADARQGEAVAALYAAKGRPSFNPLIAHVHSIEAAK 75 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 +H + LA+ FWPGPLTLVL L DI L TA L+T R+P + L+ Sbjct: 76 RHVIWTETANKLAEAFWPGPLTLVLPLRDGHDISHLVTAGLETLGVRIPAHPAARALLSA 135 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 P+A PSAN SG+IS T H++ + + I I+D G +G+ESTIV + E + Sbjct: 136 LDGPVAAPSANPSGRISPTTAAHVV-AGLDGRIAAIVDDGPCGVGVESTIVGLSGETPI- 193 Query: 191 ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALI 250 +LRPGGL E ++ + L+ D + +PG L SHYAPR++VRL +P E + Sbjct: 194 LLRPGGLAQEDIETVLGHPLQ-LRDASDPLTAPGQLLSHYAPRAKVRLNVTTPDPAELYL 252 Query: 251 RFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIA 310 FG + LNLS + L EAA NLF ++ D+ IA + IP HGLG A Sbjct: 253 GFGTMSCD--------LNLSDSADLVEAAANLFGHLHQL-DAMDKPIAVAPIPEHGLGAA 303 Query: 311 INNRLERAAAPR 322 IN+RL RAAAPR Sbjct: 304 INDRLRRAAAPR 315 >gi|149204213|ref|ZP_01881181.1| Sua5/YciO/YrdC family protein [Roseovarius sp. TM1035] gi|149142655|gb|EDM30700.1| Sua5/YciO/YrdC family protein [Roseovarius sp. TM1035] Length = 315 Score = 216 bits (551), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 134/318 (42%), Positives = 178/318 (55%), Gaps = 14/318 (4%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 D A AG +A PTETVYGL D+R+ A+ R++E K RP NPLI HV Sbjct: 10 ADLAGFATASAIWSAGGLVAFPTETVYGLGADARDDRAVARIFEAKGRPRFNPLIVHVES 69 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125 +++ + + LA FWPGPLTLVL L + + PL TA L T RVP + Sbjct: 70 DDAARRYVTWSDAAEILASAFWPGPLTLVLPLRADAGLSPLVTAELPTLAIRVPEHPVAR 129 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 L+ T+G P+A PSAN SG+IS T H+L + + I +I+GG +G+ESTIV + Sbjct: 130 GLLSTFGGPVAAPSANPSGRISPTTAAHVL-AGLSGRIEGVIEGGACAVGVESTIVGLAG 188 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245 E +LRPGG+ +E ++ A+ + L V +PG L+SHYAP + VRL A Sbjct: 189 EPC--LLRPGGVPVEAIEVALGMPLARHVAGDPL-VAPGQLQSHYAPGAPVRLNAQDRRA 245 Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305 E L+ FG V +NLS +G L EAA NLF ++ A D+ + IA S IP Sbjct: 246 GELLLGFGAVDAD--------MNLSPSGDLIEAAANLFGHLH-ALDARDAPIAVSPIPEV 296 Query: 306 GLGIAINNRLERAAAPRN 323 GLG AIN+RL RAAAPR Sbjct: 297 GLGRAINDRLRRAAAPRG 314 >gi|84500239|ref|ZP_00998505.1| Putative translation factor [Oceanicola batsensis HTCC2597] gi|84392173|gb|EAQ04441.1| Putative translation factor [Oceanicola batsensis HTCC2597] Length = 314 Score = 216 bits (550), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 133/323 (41%), Positives = 178/323 (55%), Gaps = 13/323 (4%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +++ TD + L +A L +G +A+PTETVYGLA D+ + A+ +Y K RP+ NPLI Sbjct: 3 ELLKPTD-DGLDRAAALLRSGGLVAMPTETVYGLAGDAADDRAVAAIYAAKGRPSFNPLI 61 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 HV+D +V + V + L + FWPGPLTLVL L + PL TA L T R+P Sbjct: 62 VHVADPDLVGRLVRVSAEAAALIEAFWPGPLTLVLPLREAAPVSPLVTAGLPTLAVRMPA 121 Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 + L+ +G LA PSAN SG++S H++ + + I ++DGG +GLESTI Sbjct: 122 HPVARSLLTAFGGGLAAPSANPSGRVSPVTAAHVM-AGLAGRIDAVLDGGECGVGLESTI 180 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 V + V ILR GG+ E L + E T +PG L SHYAP QVR+ Sbjct: 181 VGFDGDAPV-ILRDGGVTAEDLASVMG-ETPRRRGATGRIDAPGQLASHYAPSGQVRIGV 238 Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300 P E + FG V LNLS+TG L EAA NLF + D G+ IA + Sbjct: 239 TAPEPGETYLGFGPV--------TCDLNLSETGDLAEAAANLFRHFHTLDAQGSERIAVA 290 Query: 301 SIPNHGLGIAINNRLERAAAPRN 323 +P+HGLG AIN+RL RAAAPR Sbjct: 291 PVPDHGLGRAINDRLRRAAAPRQ 313 >gi|304321289|ref|YP_003854932.1| Sua5/YciO/YrdC family protein [Parvularcula bermudensis HTCC2503] gi|303300191|gb|ADM09790.1| Sua5/YciO/YrdC family protein [Parvularcula bermudensis HTCC2503] Length = 308 Score = 216 bits (550), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 132/314 (42%), Positives = 176/314 (56%), Gaps = 15/314 (4%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 ++ KA E L +G + +PTETVYGLA D+ AI RLYEIK RP NPLI HV D Sbjct: 9 SIDKAAEQLRSGGLVGLPTETVYGLAADATQGEAIARLYEIKGRPHFNPLIVHVLDRRDA 68 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 ++P + L FWPGPLTLVL + ++ A L T R P + L+ Sbjct: 69 AHITEMEPRADQLISRFWPGPLTLVLPSKRGGPVADIALAGLDTVAIRAPLHPVARALLA 128 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 +G P+ PSANRSG+IS T H++ + +IP ++DGG +GLESTIV + E+ Sbjct: 129 VFGGPIVAPSANRSGRISPTIAGHVV-AEFGTDIP-VLDGGPCTVGLESTIVGLTGERPT 186 Query: 190 RILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREAL 249 +LRPGG+ + ++ + E + +PGM+ SHYAP + VRL A E L Sbjct: 187 -LLRPGGITAQQIEEILG---EPLAEPGGGIDAPGMMASHYAPDAAVRLDAKAATEDEVL 242 Query: 250 IRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGI 309 + FG P +L+LS +G L EAA NLF +M+ D G IA + IP GLG Sbjct: 243 LGFGGTPGA-------TLDLSPSGDLIEAAANLFAHMRELDRHG-RPIAVAPIPEDGLGK 294 Query: 310 AINNRLERAAAPRN 323 AIN+RL RAAAPRN Sbjct: 295 AINDRLRRAAAPRN 308 >gi|83312811|ref|YP_423075.1| putative translation factor [Magnetospirillum magneticum AMB-1] gi|82947652|dbj|BAE52516.1| Putative translation factor [Magnetospirillum magneticum AMB-1] Length = 368 Score = 216 bits (549), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 121/303 (39%), Positives = 177/303 (58%), Gaps = 10/303 (3%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 +A PTETVYGL D+ + A+ +++ K RP+ NPLI HVS + + + LA Sbjct: 75 VAFPTETVYGLGGDATSDAAVAAIFKAKGRPSFNPLIAHVSSLEQAAALVELGADAHLLA 134 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRS 143 + FWPGPLTLVL + + + L++A L + R+P LI+ G PLA PSANRS Sbjct: 135 ERFWPGPLTLVLRRRADSPVSLLASAGLDSVAVRMPDHPVALALIKAAGRPLAAPSANRS 194 Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203 G++S T +H+ + + I +++DGG ++G+EST++++ E+ +LRPGG+ + L+ Sbjct: 195 GRVSPTRAEHV-AQCLEGRIAMVLDGGPCRVGVESTVLDLS-EEPPTLLRPGGITADELE 252 Query: 204 RAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENA 263 A+ + ++ P+SPG L+SHYAP VRL A P EAL+ FG P Sbjct: 253 AALGRPIRRALETPDAPRSPGQLESHYAPALPVRLNATGAEPGEALLGFGPAP------- 305 Query: 264 IISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRN 323 LNLS G L EAA +LF ++ D IA IP GLG+AIN+RL+RAAAPR+ Sbjct: 306 DCVLNLSPKGDLSEAAAHLFAMLRALDRPDYRGIAVMPIPGRGLGLAINDRLKRAAAPRD 365 Query: 324 QSQ 326 + Sbjct: 366 TQK 368 >gi|163732340|ref|ZP_02139786.1| Sua5/YciO/YrdC family protein [Roseobacter litoralis Och 149] gi|161394638|gb|EDQ18961.1| Sua5/YciO/YrdC family protein [Roseobacter litoralis Och 149] Length = 331 Score = 215 bits (547), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 127/314 (40%), Positives = 177/314 (56%), Gaps = 15/314 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + + +A + L G +A PTETVYGL D+RN A+ ++E K RP+ NPLI HV D + Sbjct: 31 DGIAQAADLLRTGALVAFPTETVYGLGADARNGRAVAAIFEAKGRPSFNPLIVHVLDATH 90 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLI 128 ++ + LA FWPGPL+LVL L + L +A L T RVP T + L+ Sbjct: 91 ARRFCHWSDTAEKLASAFWPGPLSLVLPLTEGHGLSSLVSAGLSTVALRVPAHPTARALL 150 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 + P+A PSAN SG+IS T +H+ S + + I+D G ++GLESTIV + + Sbjct: 151 RAFDGPVAAPSANPSGKISPTTAQHV-SDGLGMRVGAILDDGPCRVGLESTIVGL--DGP 207 Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248 +LRPGGL E ++R + +L + +PG L SHYAP +VRL A + E Sbjct: 208 ASLLRPGGLPAEEIERVLGQKLSR--ETEGKISAPGQLMSHYAPNGRVRLNAQRAHDGEV 265 Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLG 308 + FG + LNLS +G L EAA LF+ + D +G S+IA + IP GLG Sbjct: 266 FLGFGEM--------TCDLNLSPSGDLTEAASVLFDCLHQLDATG-SAIAVAPIPRQGLG 316 Query: 309 IAINNRLERAAAPR 322 AIN+RL+RAAAPR Sbjct: 317 AAINDRLQRAAAPR 330 >gi|46200975|ref|ZP_00207919.1| COG0009: Putative translation factor (SUA5) [Magnetospirillum magnetotacticum MS-1] Length = 328 Score = 214 bits (546), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 123/302 (40%), Positives = 175/302 (57%), Gaps = 10/302 (3%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 +A PTETVYGL D+ + A+ +++ K RP+ NPLI HVS + + + LA Sbjct: 36 VAFPTETVYGLGGDATSDLAVAAIFKAKGRPSFNPLIAHVSSLDQAAALVEIGADAHRLA 95 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-KLIETYGHPLAIPSANRS 143 + FWPGPLTLVL + + + L++A L + R+P T LI+ G PLA PSAN S Sbjct: 96 ERFWPGPLTLVLKRRAASPVSLLASAGLDSVAVRMPDHPTALALIKAAGRPLAAPSANLS 155 Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203 G++S T H+ + + I +++DGG ++G+EST++++ E+ +LRPGG+ E L+ Sbjct: 156 GRVSPTRADHV-AQCLDGRIAMVLDGGPCRVGVESTVLDL-TEEPPTLLRPGGVTAEELE 213 Query: 204 RAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENA 263 + L ++ P+SPG L SHYAP VRL A+ P EAL+ FG P Sbjct: 214 AVLGRPLRRALETPDAPRSPGQLASHYAPSLPVRLDALAAEPGEALLGFGIAP------- 266 Query: 264 IISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRN 323 LNLS G L EAA +LF ++ D IA IP GLG+AIN+RL+RAAAPR+ Sbjct: 267 ECVLNLSPKGDLDEAAAHLFAMLRALDRPDYLGIAVMPIPERGLGLAINDRLKRAAAPRS 326 Query: 324 QS 325 S Sbjct: 327 PS 328 >gi|84515815|ref|ZP_01003176.1| Sua5/YciO/YrdC family protein [Loktanella vestfoldensis SKA53] gi|84510257|gb|EAQ06713.1| Sua5/YciO/YrdC family protein [Loktanella vestfoldensis SKA53] Length = 315 Score = 214 bits (546), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 133/316 (42%), Positives = 174/316 (55%), Gaps = 13/316 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D+ L +A E L G ++ PTETVYGL D+RN A+ ++ K RP+ NPLI H+ DI Sbjct: 12 DAAGLARAAEILTQGGLVSFPTETVYGLGADARNDRAVAAIFAAKGRPSFNPLIVHLGDI 71 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKK 126 + + + + LA FWPG LTLVL L I L TA L + RVP + Sbjct: 72 TAANEICDFNDDARCLAAAFWPGALTLVLPLRPQAGISRLVTAGLDSIAVRVPDHKVAQG 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+ +G P+A PSAN SG+IS T H+ S+ I ++DGG +GLESTI V C Sbjct: 132 LLAAFGGPVAAPSANASGRISPTTAAHV-RDSLGDRIDALVDGGPCFVGLESTI--VACL 188 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246 +LR GG+ E + + L + P SPG L SHYAP QVRL A Sbjct: 189 GTPTLLRAGGIPSEAIAACLGRPLAIS-ENPDAPVSPGQLLSHYAPIGQVRLNATARQDG 247 Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306 E ++ FG + +A LNLS G L EAA LF+ + D GA+ IA + IP+HG Sbjct: 248 EVMLGFG------LMDA--DLNLSPAGDLTEAAARLFDCLHQLDAMGAARIAVAPIPDHG 299 Query: 307 LGIAINNRLERAAAPR 322 LG AIN+RL+RAAAPR Sbjct: 300 LGRAINDRLKRAAAPR 315 >gi|83941398|ref|ZP_00953860.1| Sua5/YciO/YrdC family protein [Sulfitobacter sp. EE-36] gi|83847218|gb|EAP85093.1| Sua5/YciO/YrdC family protein [Sulfitobacter sp. EE-36] Length = 314 Score = 214 bits (546), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 128/316 (40%), Positives = 179/316 (56%), Gaps = 10/316 (3%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + + +A L G +A+PTETVYGL D+RN TA+ +YE K RP+ NPLI HV+D+ Sbjct: 8 DPSGISRAATLLQQGALVALPTETVYGLGADARNGTAVAGIYEAKGRPSFNPLIIHVADV 67 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KK 126 +++ + LA FWPGP+TLVL L + L TA L + RVP T + Sbjct: 68 DQARRYGRWSDTAEILASAFWPGPMTLVLPLADGHGLSSLVTAGLDSVGIRVPAHPTARA 127 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 ++ G P+A PSAN SG+IS T +H+L S + I ++D G +GLESTI+ + + Sbjct: 128 ILRALGGPVAAPSANPSGKISATTAQHVL-SGLGGRIAAVVDDGPCTVGLESTIIGLN-Q 185 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246 + +LR GGL E ++ A+ L+ V + + +PG L SHYAP + VRL A Sbjct: 186 PRPTLLRAGGLPSEAIEAALGAPLD--VADGAEIIAPGQLASHYAPHASVRLNAQAATGG 243 Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306 E + FG ++ L LS +G L EAA +LF+ + A D IA + IP G Sbjct: 244 EVYLGFGAASGSGPDD----LTLSASGDLVEAAAHLFDRLH-ALDRLRKPIAVAPIPETG 298 Query: 307 LGIAINNRLERAAAPR 322 LG AIN+RL RAAAPR Sbjct: 299 LGRAINDRLRRAAAPR 314 >gi|254459968|ref|ZP_05073384.1| Sua5/YciO/YrdC family protein [Rhodobacterales bacterium HTCC2083] gi|206676557|gb|EDZ41044.1| Sua5/YciO/YrdC family protein [Rhodobacteraceae bacterium HTCC2083] Length = 310 Score = 214 bits (545), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 123/310 (39%), Positives = 172/310 (55%), Gaps = 14/310 (4%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 +A L G +A PTETVYGL D+R+ A+ ++Y K RP+ NPLI HV+D + Sbjct: 14 RAAGLLSDGKLVAFPTETVYGLGADARDGEAVAKIYAAKGRPSFNPLIVHVADADAARTF 73 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132 + LA FWPGP++LVL L + L TA L++ RVP G + L+ +G Sbjct: 74 GVWSDTAQRLADAFWPGPVSLVLPLRKHAGLSDLVTAGLESVALRVPAGHLAQDLLNAFG 133 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192 P+A PSAN SG+IS T +H+ + + +I ++DGG +G+ESTIV + +L Sbjct: 134 GPIAAPSANPSGRISPTTPEHVF-AGLDGKIAAVLDGGACAVGVESTIVGLTDHPT--LL 190 Query: 193 RPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRF 252 R GG ET++ + EL V + +PG L SHYAP + VRL E + F Sbjct: 191 RAGGASRETIEERLCFELATPV--SGEISAPGQLASHYAPNASVRLNVEDWQSGEKTLGF 248 Query: 253 GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAIN 312 G + LNLS++G L EAA NLF ++ + D + IA ++IP GLG AIN Sbjct: 249 GKM--------ACDLNLSESGNLIEAAANLFGHLHLLDAMEGTRIAVATIPETGLGAAIN 300 Query: 313 NRLERAAAPR 322 +RL RAAAPR Sbjct: 301 DRLRRAAAPR 310 >gi|83854875|ref|ZP_00948405.1| Sua5/YciO/YrdC family protein [Sulfitobacter sp. NAS-14.1] gi|83842718|gb|EAP81885.1| Sua5/YciO/YrdC family protein [Sulfitobacter sp. NAS-14.1] Length = 314 Score = 214 bits (545), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 128/316 (40%), Positives = 180/316 (56%), Gaps = 10/316 (3%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + + +A L G +A+PTETVYGL D+RN TA+ +YE K RP+ NPLI HV+D+ Sbjct: 8 DPSGISRAATLLQQGALVALPTETVYGLGADARNGTAVAGIYEAKGRPSFNPLIIHVADV 67 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KK 126 +++ + LA FWPGP+TLVL L + L TA L + RVP T + Sbjct: 68 DQARRYGRWSDTAEILASAFWPGPMTLVLPLADGHGLSSLVTAGLDSVGIRVPAHPTARA 127 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 ++ G P+A PSAN SG+IS T +H+L S + I ++D G +GLESTI+ + + Sbjct: 128 ILRALGGPVAAPSANPSGKISATTAQHVL-SGLEGRIAAVVDDGPCTVGLESTIIGLN-Q 185 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246 + +LR GGL E ++ A+ L+ V + + +PG L SHYAP ++VRL A Sbjct: 186 PRPTLLRAGGLPSEAIEAALGAPLD--VADGAEIIAPGQLASHYAPHARVRLNAQAATDD 243 Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306 E + FG ++ L LS +G L EAA +LF+ + A D IA + IP G Sbjct: 244 EVYLGFGAASGSGPDD----LTLSASGDLVEAAAHLFDRLH-ALDRLRKPIAVAPIPETG 298 Query: 307 LGIAINNRLERAAAPR 322 LG AIN+RL RAAAPR Sbjct: 299 LGRAINDRLRRAAAPR 314 >gi|158422031|ref|YP_001523323.1| Sua5 protein [Azorhizobium caulinodans ORS 571] gi|158328920|dbj|BAF86405.1| Sua5 protein [Azorhizobium caulinodans ORS 571] Length = 354 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 121/300 (40%), Positives = 169/300 (56%), Gaps = 4/300 (1%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 +A PTETVYGL D+ NP A+ +Y K RPA NPLI HV D++ ++ ++ ++ LA Sbjct: 54 VAFPTETVYGLGADAGNPRAVAEVYAAKGRPAFNPLISHVPDLAAAEQLGVLNADAVKLA 113 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRS 143 + FWPGPLTLV+ T I L+ A L T RVP + G P+ PSANRS Sbjct: 114 RAFWPGPLTLVVPCRDTDAICDLARAGLSTTALRVPNHPAALAFLAAAGRPVVGPSANRS 173 Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203 G +S T H++ + + I ++D G + +G+ESTIV+ ++ R+LRPGGL ++ Sbjct: 174 GHVSPTTAAHVM-ADLDGRIDAVLDAGPTMVGVESTIVDCSGDEP-RLLRPGGLARADIE 231 Query: 204 RAISVEL-EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIEN 262 + L + + + P +PG L SHYAP + VRL V P EAL+ F E+ Sbjct: 232 AVLGRPLPDAAGGDEAKPSAPGRLASHYAPNATVRLDVAEVRPGEALLTFAGHRPTGSES 291 Query: 263 AIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 A +LS G L EAA L+ ++ D GA+ IA +P GLG AI +RL RAAAPR Sbjct: 292 AAFVYDLSPAGDLAEAASRLYGALRAIDARGAAGIAVVPLPREGLGEAIADRLGRAAAPR 351 >gi|110680589|ref|YP_683596.1| Sua5/YciO/YrdC family protein [Roseobacter denitrificans OCh 114] gi|109456705|gb|ABG32910.1| Sua5/YciO/YrdC family protein [Roseobacter denitrificans OCh 114] Length = 314 Score = 214 bits (544), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 126/314 (40%), Positives = 173/314 (55%), Gaps = 15/314 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + + +A + L G +A PTETVYGL D+RN A+ ++E K RP+ NPLI HV D + Sbjct: 14 DGIAQAADLLRTGALVAFPTETVYGLGADARNGRAVATVFEAKGRPSFNPLIVHVHDATQ 73 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 ++ + LA FWPGP++LVL L + L TA L T RVP + L+ Sbjct: 74 ARRFCHWSDSAEKLATAFWPGPVSLVLPLREEHGLSSLVTAGLPTVALRVPAHPAARALL 133 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 + P+A PSAN SG+IS T +H+ + + ++ I+D G +GLESTIV + Sbjct: 134 RAFDGPVAAPSANPSGKISPTTARHV-AEGLGTKVAAILDDGPCSVGLESTIVGLDAAPC 192 Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248 +LRPGGL E ++R + L + + +PG L SHYAP VRL A E Sbjct: 193 --LLRPGGLPAEEIERVLGQTLSRATEGKIS--APGQLVSHYAPDGHVRLNATSAQAGEV 248 Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLG 308 L+ FG++ LNLS+ G L EAA LF + D +G +IA + IP HGLG Sbjct: 249 LLGFGHMDCD--------LNLSRDGDLTEAASALFESLHQLDATG-KAIAVAPIPQHGLG 299 Query: 309 IAINNRLERAAAPR 322 AIN+RL RAAAPR Sbjct: 300 AAINDRLRRAAAPR 313 >gi|114798799|ref|YP_760549.1| Sua5/YciO/YrdC/YwlC family protein [Hyphomonas neptunium ATCC 15444] gi|114738973|gb|ABI77098.1| Sua5/YciO/YrdC/YwlC family protein [Hyphomonas neptunium ATCC 15444] Length = 313 Score = 213 bits (542), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 131/306 (42%), Positives = 171/306 (55%), Gaps = 13/306 (4%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A E L G +A+PTETVYGLA D+ NP A+ RLY+ K RP NPLI HVS M + A Sbjct: 16 AVEILSGGGLVAMPTETVYGLAADAANPDAVVRLYQAKGRPRFNPLIAHVSGTEMASREA 75 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133 PL+ LA+ FWPGPLTLVL + + L+ + L+T R P LI +G Sbjct: 76 VFSPLAERLAEKFWPGPLTLVLPVNPNGTVCDLARSGLQTVGLRCPSHPAANALITEFGR 135 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 P+ PSANRSG +S T +H+ ++ + I LI+DGG +G+ESTI+ V+ E +LR Sbjct: 136 PVVAPSANRSGHVSPTRAEHV-AADLSDRIDLILDGGPCDVGIESTILAVEGETAT-LLR 193 Query: 194 PGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFG 253 G + + L+ I LE + +PGMLKSHYAP +Q+RL A E + FG Sbjct: 194 SGAIPSDVLETFIGKSLERASGLAIS--APGMLKSHYAPNAQLRLDAAAPEAGEGYLGFG 251 Query: 254 NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINN 313 LNLS G L EAA LF ++ A D+ IA + IP GLG AIN+ Sbjct: 252 -------PGVREGLNLSPEGDLAEAATKLFAMLR-ALDARFDRIAIAPIPWEGLGEAIND 303 Query: 314 RLERAA 319 RL RAA Sbjct: 304 RLARAA 309 >gi|83591784|ref|YP_425536.1| translation factor SUA5 [Rhodospirillum rubrum ATCC 11170] gi|83574698|gb|ABC21249.1| translation factor SUA5 [Rhodospirillum rubrum ATCC 11170] Length = 322 Score = 213 bits (542), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 127/324 (39%), Positives = 181/324 (55%), Gaps = 17/324 (5%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 + AL +A L AG +A PTETVYGL ++ + TA+ +Y K RP+ NPLI H+ D+ Sbjct: 8 EGAALAQAARILAAGGLVAFPTETVYGLGANALDDTAVASIYAAKGRPSFNPLIVHLPDL 67 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKK 126 + H +VD + LA FWPGPLTLVL + + L +A L TA R P + Sbjct: 68 DAARAHVAVDGRAERLAAAFWPGPLTLVLPRRAGCRLSLLVSAGLDTAAIRCPDHPLALE 127 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+ PLA PSAN SG +S T H+ + + L++DGG +GLEST++++ Sbjct: 128 LLRACALPLAAPSANPSGAVSPTTAAHV-REGLGGRVDLVLDGGACGVGLESTVLDLSTP 186 Query: 187 KKVRILRPGGLEIETLKRAISVELE---YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 + + +LRPG + L + ++ + + P+SPG L SHYAP ++VRL A + Sbjct: 187 RAL-LLRPGAISRAMLAEVLGEPVDRPSATPSDPTAPRSPGQLLSHYAPTARVRLNASAI 245 Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI- 302 P E L+ FG V A +L+LS +G L+EAA NLF+ ++ D ++IA S I Sbjct: 246 GPGEVLLGFGPV-------AGATLSLSPSGDLREAAANLFSMLRALDADHPATIAVSPIP 298 Query: 303 ---PNHGLGIAINNRLERAAAPRN 323 P GL AIN+RL RAAAPR Sbjct: 299 ETDPGDGLAAAINDRLRRAAAPRG 322 >gi|170740606|ref|YP_001769261.1| Sua5/YciO/YrdC/YwlC family protein [Methylobacterium sp. 4-46] gi|168194880|gb|ACA16827.1| Sua5/YciO/YrdC/YwlC family protein [Methylobacterium sp. 4-46] Length = 330 Score = 211 bits (538), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 126/307 (41%), Positives = 174/307 (56%), Gaps = 3/307 (0%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 E L AG +A PTETVYGL D+ + A+ +Y K RP NPLI H+ + + ++ Sbjct: 26 ELLRAGAVVAFPTETVYGLGGDATDGAAVAAIYAAKARPRFNPLIAHLPEAAAARREGVF 85 Query: 77 DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPL 135 + LA+ FWPGPLTLV+ + L+ A L + RVP + L+ G P+ Sbjct: 86 GAQASRLAEAFWPGPLTLVVPRAPEGSVCDLARAGLDSVALRVPAAPLARDLLRAVGRPI 145 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 A PSANRSG++S T +H+L+ + I ++DGG +G+ESTIV + R+LRPG Sbjct: 146 AAPSANRSGRVSPTRAEHVLAD-LDGRIAALLDGGPCPVGVESTIVAC-LDDAPRLLRPG 203 Query: 196 GLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNV 255 G+ E L+ + L + P SPG+L SHYAPR+ +RL A + P EA + FG Sbjct: 204 GVPREALEAVLGGPLRAAAPAGAAPVSPGLLASHYAPRAALRLDAAEIRPGEAALLFGGA 263 Query: 256 PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRL 315 + A L+LS G L EAA LF ++ D SGA++IA + IP GLG AI +RL Sbjct: 264 RPPGLAAAAARLDLSPRGDLAEAASRLFAALRTLDASGAATIAVTPIPREGLGEAIADRL 323 Query: 316 ERAAAPR 322 RAAAPR Sbjct: 324 ARAAAPR 330 >gi|260429406|ref|ZP_05783383.1| Sua5/YciO/YrdC family protein [Citreicella sp. SE45] gi|260420029|gb|EEX13282.1| Sua5/YciO/YrdC family protein [Citreicella sp. SE45] Length = 315 Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 126/318 (39%), Positives = 177/318 (55%), Gaps = 11/318 (3%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 D + +A L G +A PTETVYGL ++ + A+ ++E K RP+ NPLI H++D Sbjct: 8 ADPEGIARAATLLRDGQLVAFPTETVYGLGGNALDDRAVAGIFEAKGRPSFNPLIVHLAD 67 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + VK+ L+ A++FWPGPLT+VL + + + L +A L + R+P + Sbjct: 68 LDAVKELVQWSDLADVAAQVFWPGPLTMVLPIRAGAKVSKLVSAGLDSLAVRMPASPVAR 127 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 L+ G P+A PSANRSG+IS T +H+L ++ I ++DGG +GLESTI+ + Sbjct: 128 TLLRECGCPVAAPSANRSGRISPTRAEHVL-ETLDGRIAAVLDGGPCDVGLESTILGLT- 185 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245 K +LRPG + L A+ + D +PG L SHYAP ++VRL A + Sbjct: 186 -GKPTLLRPGRVTAALLSEALGRPVMERRDRDQI-SAPGQLASHYAPNARVRLNASEWHE 243 Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305 EA + FG LNLS G L EAA NLF Y+ D SGA IA +P+ Sbjct: 244 GEARLGFGRT------EGDCDLNLSPAGDLVEAAANLFEYLHRLDSSGAEVIAVMPVPHV 297 Query: 306 GLGIAINNRLERAAAPRN 323 GLG+AIN+RL RAAAPR Sbjct: 298 GLGVAINDRLSRAAAPRG 315 >gi|296448212|ref|ZP_06890109.1| Sua5/YciO/YrdC/YwlC family protein [Methylosinus trichosporium OB3b] gi|296254296|gb|EFH01426.1| Sua5/YciO/YrdC/YwlC family protein [Methylosinus trichosporium OB3b] Length = 323 Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 126/307 (41%), Positives = 179/307 (58%), Gaps = 5/307 (1%) Query: 20 DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL 79 D GL +A PTETVYGL D+ +P A+ R+Y K RP+ NPLI HV+D+ A++ Sbjct: 21 DGGL-VAFPTETVYGLGADATSPAAVARIYRAKGRPSFNPLIAHVADLDAALAEAALPKA 79 Query: 80 SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIP 138 ++ LA+ WPGPLTLV ++ + L+ A L + RVP LI G P+A P Sbjct: 80 AIRLAETLWPGPLTLVAPRVAAGSVCDLACAGLASVALRVPEAPVALALIRAAGRPIAAP 139 Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLE 198 SANRSG +S H++ + + L++DGG ++ G+ESTI++ E R+LRPG L Sbjct: 140 SANRSGHVSPVTAAHVI-EDLDGAVDLVLDGGRAERGVESTILSFVGETP-RLLRPGALA 197 Query: 199 IETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIK 258 ETL+ + LE + +PGM SHYAPR+++RL A + EA + F Sbjct: 198 RETLEALLGRPLE-TTGAAAAVVAPGMTASHYAPRARLRLDASALREGEAGLDFAGALRA 256 Query: 259 NIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERA 318 + A + ++LS G L+EAA NLF +++ D GA IA + IP HGLG AI +RL RA Sbjct: 257 RADAAAMIVDLSPKGDLEEAAANLFGHLRELDARGADHIAVAPIPAHGLGEAIADRLRRA 316 Query: 319 AAPRNQS 325 AAPR ++ Sbjct: 317 AAPRTKA 323 >gi|330993932|ref|ZP_08317862.1| hypothetical protein SXCC_03827 [Gluconacetobacter sp. SXCC-1] gi|329758878|gb|EGG75392.1| hypothetical protein SXCC_03827 [Gluconacetobacter sp. SXCC-1] Length = 325 Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 133/330 (40%), Positives = 180/330 (54%), Gaps = 14/330 (4%) Query: 1 MQIMSITDS-NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 MQ + D+ + +A L AG +A TETVYGL D+RN A+ +Y K RP +NP Sbjct: 1 MQTRLLPDTPHGREEAAAILRAGGLVAFGTETVYGLGADARNDHAVAAIYAAKGRPGINP 60 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 LI H + + PL+ LA FWPGPLTLVL I P++TA L TA RV Sbjct: 61 LISHFTTADAAFAQVTPTPLARGLASRFWPGPLTLVLPRAPGCAISPIATAGLSTAAVRV 120 Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P G T+ L+ G P+ PSAN SG++S ++ H+L + + I ++D G +G+ES Sbjct: 121 PAGGNTRALLAACGFPVVAPSANPSGRVSPSDALHVL-AGLDGRIDAVLDCGPCHVGVES 179 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRA--ISVELEYCVDETSTPQSPGMLKSHYAPRSQV 236 TIV++ V +LRPGG+ +E L+ A + V + S P +PG L SHYAP V Sbjct: 180 TIVDLSGPAPV-LLRPGGVTLEALEAACGMPVAMPRASSNDSRPLAPGQLSSHYAPGLAV 238 Query: 237 RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS- 295 RL A V EAL+ FG + + + NLS G L+EAA LF ++ D G Sbjct: 239 RLDADTVGADEALLAFG----PPLPGSPLVWNLSARGDLREAAARLFAGLRFLDMEGHRR 294 Query: 296 ---SIAFSSIPNHGLGIAINNRLERAAAPR 322 IA +P HGLG AI +RL RAA+PR Sbjct: 295 GLVRIAVQPVPAHGLGRAIRDRLVRAASPR 324 >gi|254464111|ref|ZP_05077522.1| Sua5/YciO/YrdC family protein [Rhodobacterales bacterium Y4I] gi|206685019|gb|EDZ45501.1| Sua5/YciO/YrdC family protein [Rhodobacterales bacterium Y4I] Length = 316 Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 132/324 (40%), Positives = 179/324 (55%), Gaps = 16/324 (4%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +I++ T++ + +A + L G ++ PTETVYGL D+R A+ +YE K RP+ NPLI Sbjct: 7 EILAATEAG-IARAAQLLREGKLVSFPTETVYGLGADARQGKAVAAIYEAKGRPSFNPLI 65 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 HV +++ + + LA FWPGPLTLVL L I PL TA L T RVP Sbjct: 66 AHVHSAEAAQRYVEWNGTAETLAHAFWPGPLTLVLPLRGGHGISPLVTAGLDTLGVRVPA 125 Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 + L+ P+A PSAN SG+IS T H+ + + I I+D G +GLESTI Sbjct: 126 HPAAQALLRALDGPVAAPSANPSGKISPTTAAHV-KAGLDGRIAAILDDGACGVGLESTI 184 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTP-QSPGMLKSHYAPRSQVRLR 239 + + + V +LRPGGL E ++ + +L V + P +PG L SHYAP + VRL Sbjct: 185 IGLAGPEPV-LLRPGGLAAEEIEAVLGRKL--GVRDAHDPLTAPGQLLSHYAPGAPVRLN 241 Query: 240 AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF 299 A E + FG + LNLS+ G L EAA NLF ++ D G IA Sbjct: 242 AAAPVKGELYLGFG--------HGACDLNLSERGDLAEAAANLFGHLHQLDALG-KPIAV 292 Query: 300 SSIPNHGLGIAINNRLERAAAPRN 323 + IP HGLG AIN+RL RAAAPR+ Sbjct: 293 APIPEHGLGEAINDRLRRAAAPRD 316 >gi|163738876|ref|ZP_02146289.1| Sua5/YciO/YrdC family protein [Phaeobacter gallaeciensis BS107] gi|161387681|gb|EDQ12037.1| Sua5/YciO/YrdC family protein [Phaeobacter gallaeciensis BS107] Length = 315 Score = 210 bits (534), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 125/312 (40%), Positives = 172/312 (55%), Gaps = 13/312 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + A + L G +A PTETVYGL D+R A+ LY K RP+ NPLI HV + + Sbjct: 16 ISTAADLLKEGQLVAFPTETVYGLGADARQTNAVEALYAAKGRPSFNPLIAHVHSVETAQ 75 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 +H ++ LA+ FWPGPLTLVL L I PL TA L T R+P + L+ Sbjct: 76 RHVIWSDIADTLAEAFWPGPLTLVLPLREDHGISPLVTAGLNTLGIRIPAHPAARALLSV 135 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 P+A PSAN SG+IS T H++ + + I ++D G +G+ESTI+ + + Sbjct: 136 LDGPVAAPSANPSGRISPTTAAHVI-AGLGGRIAAVVDDGPCGVGVESTIIGLATGTPL- 193 Query: 191 ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALI 250 +LRPGGL E ++ + L + D + +PG L SHYAPR+ VRL E + Sbjct: 194 LLRPGGLATEEIEAVLGHTL-HLRDASDPLTAPGQLLSHYAPRASVRLNVTTPQDGELYL 252 Query: 251 RFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIA 310 FG + LNLS +G L+EAA LF ++ D+ A IA + IP+ GLG+A Sbjct: 253 GFGAMECD--------LNLSASGDLREAAAQLFGHLHRL-DARAQPIAVAPIPDAGLGVA 303 Query: 311 INNRLERAAAPR 322 IN+RL RAAAPR Sbjct: 304 INDRLRRAAAPR 315 >gi|260576257|ref|ZP_05844249.1| Sua5/YciO/YrdC/YwlC family protein [Rhodobacter sp. SW2] gi|259021525|gb|EEW24829.1| Sua5/YciO/YrdC/YwlC family protein [Rhodobacter sp. SW2] Length = 318 Score = 209 bits (532), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 123/313 (39%), Positives = 172/313 (54%), Gaps = 13/313 (4%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 +A L G +A+PTETVYGLA D+R + R++ K RP NPLI H+ +++ ++ Sbjct: 16 RAAAILRGGGLVAMPTETVYGLAGDARLDATVARIFAAKGRPGFNPLIVHLENLAQAREL 75 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYG 132 A D + LA+ FWPGPLTLVL + + PL +A L + R+P + L+ +G Sbjct: 76 AVFDARAEALAQAFWPGPLTLVLPRRADAGLSPLVSAGLASVALRLPAHPVARALLAAFG 135 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192 PLA PSAN SG++S T H+ + I I+DGG ++G+ES+IV + +L Sbjct: 136 GPLAAPSANPSGRVSPTTSAHV-RDGLGGRIDAILDGGACEVGVESSIVGLTGPAT--LL 192 Query: 193 RPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRF 252 RPGG+ +E L+ A+ L D +PG L SHYAP + VRL P E + F Sbjct: 193 RPGGIPLEALEAALGSRLVTAADPAKI-TAPGQLASHYAPSAAVRLNVTSPLPDEVWVGF 251 Query: 253 GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGA--SSIAFSSIPNHGLGIA 310 G +L LS G L EAA LF+ ++ AD +IAF+ +P GLG A Sbjct: 252 GPA------CPGAALTLSPNGDLVEAAAALFHILRRADALAGPNGAIAFAPVPETGLGRA 305 Query: 311 INNRLERAAAPRN 323 IN+RL RAAAPR Sbjct: 306 INDRLRRAAAPRT 318 >gi|163741878|ref|ZP_02149268.1| Sua5/YciO/YrdC family protein [Phaeobacter gallaeciensis 2.10] gi|161385051|gb|EDQ09430.1| Sua5/YciO/YrdC family protein [Phaeobacter gallaeciensis 2.10] Length = 315 Score = 209 bits (532), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 125/309 (40%), Positives = 170/309 (55%), Gaps = 13/309 (4%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A + L G +A PTETVYGL D+R A+ LY K RP+ NPLI HV + ++H Sbjct: 19 AADLLKEGQLVAFPTETVYGLGADARQTNAVEALYAAKGRPSFNPLIAHVHSVETAQRHV 78 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133 ++ LA+ FWPGPLTLVL L I PL TA L T R+P + L+ Sbjct: 79 IWSDIADTLAEAFWPGPLTLVLPLREDHGISPLVTAGLNTLGIRIPAHPAARALLSVLDG 138 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 P+A PSAN SG+IS T H++ + + I ++D G +G+ESTI+ + + +LR Sbjct: 139 PVAAPSANPSGRISPTTAAHVI-AGLGGRIAAVVDDGPCGVGVESTIIGLATGTPL-LLR 196 Query: 194 PGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFG 253 PGGL E ++ + L + D + +PG L SHYAPR+ VRL E + FG Sbjct: 197 PGGLATEEIEAVLGHTL-HLRDASDPLTAPGQLLSHYAPRASVRLNVTTPQDGELYLGFG 255 Query: 254 NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINN 313 + LNLS +G L+EAA LF ++ D+ A IA + IP GLG+AIN+ Sbjct: 256 AMECD--------LNLSASGDLREAAAQLFGHLHRL-DARAQPIAVAPIPEAGLGVAIND 306 Query: 314 RLERAAAPR 322 RL RAAAPR Sbjct: 307 RLRRAAAPR 315 >gi|56695212|ref|YP_165560.1| Sua5/YciO/YrdC family protein [Ruegeria pomeroyi DSS-3] gi|56676949|gb|AAV93615.1| Sua5/YciO/YrdC family protein [Ruegeria pomeroyi DSS-3] Length = 316 Score = 209 bits (531), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 132/317 (41%), Positives = 174/317 (54%), Gaps = 14/317 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + + +A E L G +A PTETVYGL D+ N A+ +Y K RP+ NPLI HV+ Sbjct: 12 DPDGIARAAELLRDGRLVAFPTETVYGLGGDATNGQAVAGIYAAKGRPSFNPLIAHVASA 71 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK- 126 ++H + LA FWPGPLTLVL L + I L TA L T RVP T + Sbjct: 72 EAARRHVHWSETAERLATAFWPGPLTLVLPLRANHGISELVTAGLDTLAVRVPAHPTART 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+ T P+A PSAN SG+IS T H+L + + I ++D G +G+ESTIV + Sbjct: 132 LLATLDRPVAAPSANPSGRISPTTADHVL-AGLDGRIAAVLDAGPCGVGVESTIVGLSGT 190 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246 +LRPGGL E ++ + L + +PG L SHYAP+S VRL A + Sbjct: 191 PI--LLRPGGLPTEEIEALLGQPLARH-QQGDNISAPGQLLSHYAPQSTVRLNARAPSDG 247 Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306 E + FG P+ E NLS +G L EAA NLF + D +G IA + IP G Sbjct: 248 EVFLGFG--PMDCDE------NLSPSGNLTEAAANLFAALHRLDTTG-KPIAIAPIPERG 298 Query: 307 LGIAINNRLERAAAPRN 323 LG+AIN+RL RAAAPR+ Sbjct: 299 LGLAINDRLRRAAAPRD 315 >gi|254293530|ref|YP_003059553.1| Sua5/YciO/YrdC/YwlC family protein [Hirschia baltica ATCC 49814] gi|254042061|gb|ACT58856.1| Sua5/YciO/YrdC/YwlC family protein [Hirschia baltica ATCC 49814] Length = 309 Score = 209 bits (531), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 131/314 (41%), Positives = 181/314 (57%), Gaps = 20/314 (6%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + + +A + + G +AIPTETVYGLA D+ N A+ R+Y K RP+ NPLI HV+D+ M Sbjct: 11 DTMEQAAQIIRDGGIVAIPTETVYGLAADATNGEAVARIYAAKGRPSFNPLISHVNDMEM 70 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LI 128 ++ A+ P +L L + FWPGPLTLVL + L+TA L T R P + LI Sbjct: 71 AEELANFSPAALELVEKFWPGPLTLVLPKTKYCPVSALATAGLDTIALRAPRHIVARGLI 130 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 PLA PSAN S +S T +H+ + + + LI+DGG K G+EST+V+V E+ Sbjct: 131 AAARCPLAAPSANPSEALSPTTAQHV-ADMLSGNVDLILDGGPCKTGVESTVVSVVGERP 189 Query: 189 VRILRPGGL---EIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245 +LRPG L EIE + + E SPGM++ HYAP +++RL AI Sbjct: 190 A-LLRPGALPRAEIEAITGPLDAPSEKIA-------SPGMMRRHYAPNAKLRLDAISPEK 241 Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305 EA + FG P K+ ++ NLS +G L EAA NLF ++I D IA + IP+ Sbjct: 242 GEAYLGFG--PSKH----KVAANLSTSGDLLEAAANLFAMLRILDLQ-YDRIAIAPIPHE 294 Query: 306 GLGIAINNRLERAA 319 GLG AIN+RL+RAA Sbjct: 295 GLGEAINDRLKRAA 308 >gi|86139042|ref|ZP_01057613.1| Sua5/YciO/YrdC family protein [Roseobacter sp. MED193] gi|85824273|gb|EAQ44477.1| Sua5/YciO/YrdC family protein [Roseobacter sp. MED193] Length = 329 Score = 209 bits (531), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 132/321 (41%), Positives = 178/321 (55%), Gaps = 11/321 (3%) Query: 6 ITDSNA--LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 + D++A L +A + L G ++ PTETVYGL D+R A+ +Y K RP+ NPLI H Sbjct: 12 VLDASASDLTRAAQLLRQGKLVSFPTETVYGLGGDARRGDAVAAIYTAKGRPSFNPLIAH 71 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 VS + K++ + + LA+ FWPGPLTLVL L I L TA L T RVP Sbjct: 72 VSSVEAAKRYVIWNAWAETLAQAFWPGPLTLVLPLAPDHGISELVTAGLDTLALRVPAHP 131 Query: 124 T-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 T +KL+ P+A PSAN SG+IS T H++ + + I ++ G +GLESTIV Sbjct: 132 TAQKLLAELDVPVAAPSANSSGRISPTTADHVM-AGLAGRIAAVVADGACSVGLESTIVG 190 Query: 183 VQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242 + + + +LRPGGL E ++ + L D +PG L SHYAP+ +VRL A Sbjct: 191 LAGDAPM-LLRPGGLAAEQIEAVLGQPLA-SRDIHDPLTAPGQLLSHYAPQERVRLDA-- 246 Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302 +PR G P L+LS TG L +AA NLF ++ D G IA + I Sbjct: 247 TSPRAGECYLGFGPYSGAR--ACDLSLSDTGDLAQAAANLFGHLHRLDAQGL-PIAVAPI 303 Query: 303 PNHGLGIAINNRLERAAAPRN 323 P GLGIAIN+RL RAAAPR+ Sbjct: 304 PETGLGIAINDRLRRAAAPRD 324 >gi|294084260|ref|YP_003551018.1| Sua5/YciO/YrdC/YwlC family protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292663833|gb|ADE38934.1| Sua5/YciO/YrdC/YwlC family protein [Candidatus Puniceispirillum marinum IMCC1322] Length = 325 Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 132/332 (39%), Positives = 189/332 (56%), Gaps = 20/332 (6%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 + +SI++ N++ +A + L AG +A PTETVYGL D+ N A+ +++ K RP+ NPLI Sbjct: 3 ECLSISE-NSVARAVDLLRAGQLVAFPTETVYGLGGDACNDHAVAGIFKTKGRPSFNPLI 61 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 HV+ I M ++ LA FWPG +T++LD + L+TA L RVP Sbjct: 62 SHVATIDMAFTLGKKTAIAEILAYNFWPGAMTMILDRTKDCKVSMLTTAGLDKIAVRVPS 121 Query: 122 -GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 +L+ ++G PLA PSAN SG+IS + V H++ + +I LI+DGG + GLESTI Sbjct: 122 HEAATQLLSSFGGPLAAPSANPSGRISPSTVSHVI-DGLGGQIDLILDGGACESGLESTI 180 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAIS------VELEYCVDETSTPQSPGMLKSHYAPRS 234 ++ V ILRPGG+ + + ++ +E ++ P SPG L SHYAP+ Sbjct: 181 IDCSANIPV-ILRPGGITRDAVNDVLNQAGHRLLEQTIAGNDDKRPVSPGQLASHYAPQL 239 Query: 235 QVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG- 293 VR+ A + E I FG+ + A LNLS +G L EAA NLF + AD G Sbjct: 240 GVRMNATNAEDTEIAIGFGS----QMHEA--PLNLSLSGNLTEAAANLFALLHKADKLGA 293 Query: 294 ---ASSIAFSSIPNHGLGIAINNRLERAAAPR 322 A+ IA + IP+H LG AIN+RL RA+APR Sbjct: 294 KQNATHIAIAPIPDHELGEAINDRLRRASAPR 325 >gi|89070201|ref|ZP_01157529.1| Sua5/YciO/YrdC family protein [Oceanicola granulosus HTCC2516] gi|89044217|gb|EAR50368.1| Sua5/YciO/YrdC family protein [Oceanicola granulosus HTCC2516] Length = 317 Score = 206 bits (525), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 132/326 (40%), Positives = 176/326 (53%), Gaps = 15/326 (4%) Query: 1 MQIMSITDSNALRKACEFL--DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58 M + D L +A L + G+ +A PTETVYGL + + A+ R++E K RPA N Sbjct: 1 MTLRLALDDAGLAEAARLLRTEGGI-VAFPTETVYGLGARACDDRAVARVFEAKGRPAFN 59 Query: 59 PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 PLI H D++ V+ ++ P + LA FWPGPLTLVL L + PL T T R Sbjct: 60 PLIVHCPDLATVETLCTLPPGAGRLAATFWPGPLTLVLPLRPDAPVSPLVTDGRDTLAVR 119 Query: 119 VPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 +P + + PLA PSAN SG+IS T+ H+L + + I ++D G +GLES Sbjct: 120 LPDHPAARALLARTGPLAGPSANPSGRISPTSADHVL-AGLDGRIDAVLDAGPCPVGLES 178 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238 TIV + E +LR GGL E L+ + L T +PG L SHYAPR +RL Sbjct: 179 TIVALLPEPT--LLRAGGLPTEALEACLGAPLAAHGGGEIT--APGQLASHYAPRGTLRL 234 Query: 239 RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIA 298 A P E + FG + +LNLS +G L EAA LF + D +GA IA Sbjct: 235 DADAPAPGETYLGFGPA-------SPGALNLSPSGDLVEAAARLFAALHALDAAGARRIA 287 Query: 299 FSSIPNHGLGIAINNRLERAAAPRNQ 324 + IP HGLG AIN+RL RAAAPR++ Sbjct: 288 VAPIPAHGLGRAINDRLRRAAAPRDE 313 >gi|85709789|ref|ZP_01040854.1| putative translation factor [Erythrobacter sp. NAP1] gi|85688499|gb|EAQ28503.1| putative translation factor [Erythrobacter sp. NAP1] Length = 315 Score = 206 bits (525), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 126/313 (40%), Positives = 179/313 (57%), Gaps = 13/313 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D+ + +A + L +G +A+PTETVYGLA + + A+ ++Y K RP NPLI HV DI Sbjct: 13 DAAGIARAADHLTSGELVAVPTETVYGLAARADSADAVAKIYAAKGRPDFNPLIVHVRDI 72 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKK 126 + A D ++ L + FWPGPLTLVL + S I TA L T R P + Sbjct: 73 EQAQGLAEFDDRAIDLVERFWPGPLTLVLPIRSDAAIAKAVTAGLPTIGLRQPSHKVMQA 132 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 ++++ G PLA PSANRS IS T +H+ ++S+ PLI+DGG S+ GLESTIV ++ Sbjct: 133 VLKSVGVPLAAPSANRSEHISPTRAEHV-TASLGDNAPLILDGGPSQSGLESTIVALRQS 191 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246 +LRPG + ETL+R + E E E S+ ++PG ++ HY+P +RL A V Sbjct: 192 GDWNLLRPGPVTKETLERILGPESEI---EGSSIEAPGQMERHYSPGKPMRLSASEVAQE 248 Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306 E I FG ++E NLS+ G L EAA L+ + +A S +I+ + IP Sbjct: 249 EFFIGFG-----SLEG---DCNLSEAGDLNEAAARLYECLHLAAASDKPAISVAPIPYGE 300 Query: 307 LGIAINNRLERAA 319 +G AIN+RL RAA Sbjct: 301 VGRAINDRLRRAA 313 >gi|295687746|ref|YP_003591439.1| Sua5/YciO/YrdC/YwlC family protein [Caulobacter segnis ATCC 21756] gi|295429649|gb|ADG08821.1| Sua5/YciO/YrdC/YwlC family protein [Caulobacter segnis ATCC 21756] Length = 325 Score = 206 bits (523), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 123/309 (39%), Positives = 174/309 (56%), Gaps = 11/309 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + A L AG + +PTETVYGL D+ NPTA+ ++E K RP NPLI HV+D+ + Sbjct: 23 IEAAASALRAGGLVILPTETVYGLGADAANPTAVAAIFEAKGRPRFNPLIAHVADLETAE 82 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 + A D + LA+ FWPGPLT+V + + + L+ A L T RVP ++ ++ Sbjct: 83 RIADFDHRARDLAREFWPGPLTIVAPIKDASVVCDLARAGLDTVAIRVPGHPVSRAVLAA 142 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 +G + PSANRSG+ S T ++ + K +DGG +GLEST+V+V + + R Sbjct: 143 FGGAVVAPSANRSGRPSPTTYADAMAETGDKAA-AALDGGPCAVGLESTVVSV-LDGQAR 200 Query: 191 ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALI 250 +LRPG + L++ + E D +SPG L HYAP + VR+ A P EA + Sbjct: 201 LLRPGAVTRVQLQQIVGPLAEADDDAK---RSPGRLALHYAPDAPVRINAKAPKPGEAFL 257 Query: 251 RFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIA 310 FG + NLS TG L EAA NLF+Y++ AD + S+IA + IP GLG A Sbjct: 258 AFGGG-----ASGEGVFNLSPTGDLAEAASNLFSYLRAADRTHPSAIAVAPIPEEGLGEA 312 Query: 311 INNRLERAA 319 IN+RL RAA Sbjct: 313 INDRLRRAA 321 >gi|58038771|ref|YP_190735.1| hypothetical protein GOX0296 [Gluconobacter oxydans 621H] gi|58001185|gb|AAW60079.1| Hypothetical protein GOX0296 [Gluconobacter oxydans 621H] Length = 337 Score = 205 bits (521), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 129/330 (39%), Positives = 184/330 (55%), Gaps = 17/330 (5%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +R+A E L AG +A TETVYGL + + TA+ +++ K RP NPLI H+ D Sbjct: 15 EGIRRAAELLKAGKLVAFGTETVYGLGAIASSDTAVAKIFAAKGRPRFNPLISHLPDAES 74 Query: 70 VKKHAS----VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125 AS ++ ++ LA+ FWPGPLT+VL + + L+ A L T RVP G T Sbjct: 75 AFAQASLSGRMEEIAHALAERFWPGPLTMVLPRSPNSTVSDLAAAGLSTLALRVPRGKTA 134 Query: 126 -KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 L+ G P+A PSAN SG +S ++ H+L S+ I ++D G IG+EST++++ Sbjct: 135 LALLREVGAPVAAPSANVSGTVSPSDAFHVL-RSLDGRIDAVLDSGPCSIGVESTVLDLT 193 Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVDETS-TPQSPGMLKSHYAPRSQVRLRAIHV 243 E V +LRPGG+ +E L A+ + + D + P SPG L SHYAP VRL A + Sbjct: 194 REVPV-LLRPGGVTLEELT-ALCGPIRHPDDFSEIAPASPGRLASHYAPSLPVRLDATSI 251 Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGA----SSIAF 299 P EA + FG + A ++ NLS++G L+EAA LF ++ D G +IA Sbjct: 252 APDEAQLAFGT----PLPGAGLTWNLSESGNLEEAAARLFAGLRFLDAEGTRRGLKTIAA 307 Query: 300 SSIPNHGLGIAINNRLERAAAPRNQSQRIV 329 IP HGLG+AI +RL RAA PR + + Sbjct: 308 QPIPRHGLGLAIRDRLRRAAEPRTHAATLT 337 >gi|154251230|ref|YP_001412054.1| Sua5/YciO/YrdC/YwlC family protein [Parvibaculum lavamentivorans DS-1] gi|154155180|gb|ABS62397.1| Sua5/YciO/YrdC/YwlC family protein [Parvibaculum lavamentivorans DS-1] Length = 320 Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 123/312 (39%), Positives = 174/312 (55%), Gaps = 13/312 (4%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 E + G +A PTETVYGL D+ + A+ R++E K RP NPLI HV+D + +K+ Sbjct: 17 ELIREGKLVAFPTETVYGLGADASDEKAVARIFEAKGRPRFNPLIVHVADAQVAEKYVVF 76 Query: 77 DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPL 135 + LA+ FWPG LTLVL + + L +A L T RVP T + L+E P+ Sbjct: 77 SAEAEALARHFWPGGLTLVLPRRADAKLSLLVSAGLDTVAIRVPAHETAQALLEAAKRPI 136 Query: 136 AIPSANRSGQISITNVKHILSSSICKE-IPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194 A PSAN SG++S T H++ S + + +++DGG ++GLES+++ + +LRP Sbjct: 137 AAPSANASGKVSPTQAGHVMESLGHSDLLAMVLDGGACRLGLESSVIGFP-QGIPTLLRP 195 Query: 195 GGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRF 252 G + E ++ + L + SPG L+SHYAP + +RL A P E L+ F Sbjct: 196 GAVAREEIEAVLGGRLADADAAAGEAGRASPGQLESHYAPGAPLRLDAAEAGPDEVLLGF 255 Query: 253 GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD-DSGASSIAFSSIPNHGLGIAI 311 G A S+NLS +G L EAA NLF ++ D +G IA S IP GLG AI Sbjct: 256 G-------PEAKSSMNLSASGDLTEAAANLFAMLRALDATAGGKRIAVSPIPMEGLGEAI 308 Query: 312 NNRLERAAAPRN 323 N+RL+RAAAPR Sbjct: 309 NDRLKRAAAPRG 320 >gi|239948185|ref|ZP_04699938.1| Sua5/YciO/YrdC/YwlC family protein [Rickettsia endosymbiont of Ixodes scapularis] gi|239922461|gb|EER22485.1| Sua5/YciO/YrdC/YwlC family protein [Rickettsia endosymbiont of Ixodes scapularis] Length = 312 Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 129/318 (40%), Positives = 183/318 (57%), Gaps = 19/318 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + KA E++ +G + +PTETVYG+ D+ N A ++++ K RPA+NPLI HV+ I K Sbjct: 2 ISKAVEYIKSGKVVVLPTETVYGIGADATNNEACLKIFQFKNRPAINPLIVHVASIEQAK 61 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 + + L+ +A+ FWPGPL++V+ L +I P T L T R+P +LI Sbjct: 62 EIGEFNDLATKIAEKFWPGPLSIVVPLKVNANIAPSVTVGLNTIAIRMPSYPLALELIRQ 121 Query: 131 YGHPLAIPSANRSGQISITNVKHIL-----SSSICKEIPLIIDGGISKIGLESTIVNVQC 185 G P+A PSAN S IS TNV+H+ ++ I P I S+ GLESTI++ Sbjct: 122 SGVPIAAPSANPSNYISPTNVEHVTKHFSENAEIFILAPEIYQ---SEYGLESTIIDTTT 178 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245 ILR G + E L+ + V++ ETST ++PGML +HY+P+ VRL AI++ Sbjct: 179 VTPT-ILREGFITAEILEEVLGVKV-LKASETSTIKAPGMLATHYSPKVPVRLNAINLED 236 Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGA----SSIAFSS 301 +E + FGN N+ SLNLS G L EAA NL+ Y++I DD A SSIA Sbjct: 237 KEIGLNFGN---SNLTGK-FSLNLSAKGNLIEAAANLYAYLRILDDYAAAHDVSSIAVVP 292 Query: 302 IPNHGLGIAINNRLERAA 319 IP +G AIN+RL+RAA Sbjct: 293 IPQVNIGAAINDRLKRAA 310 >gi|209964929|ref|YP_002297844.1| Sua5 [Rhodospirillum centenum SW] gi|209958395|gb|ACI99031.1| Sua5 [Rhodospirillum centenum SW] Length = 326 Score = 203 bits (517), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 127/303 (41%), Positives = 167/303 (55%), Gaps = 11/303 (3%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 +A PTETVYGL D+ N A+ ++E K RP NPLI HV D + +VD + H Sbjct: 30 VAFPTETVYGLGADAGNDRAVASIFEAKGRPHFNPLIVHVPDDGAAGRLVTVDERARHAM 89 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANRS 143 +++WPGPLTLVL + L +A L T R P + L+ G P+A PSANRS Sbjct: 90 EMWWPGPLTLVLPRRPDAPLSLLVSAGLDTVAVRCPGHPVARALLAAAGRPVAAPSANRS 149 Query: 144 GQISITNVKHI---LSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200 G +S T H+ ++ LI+ GG IGLEST++++ E+ + +LRPG + E Sbjct: 150 GHVSPTTPLHVAEEFPDGAGGKLRLILAGGRCPIGLESTVLDLTGERPL-LLRPGSVTRE 208 Query: 201 TLKRAIS-VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKN 259 L+ + V+ D ++PGML SHYAP VRL A P EA + FG P + Sbjct: 209 ELEAVLGPVDRATAADGV---KAPGMLTSHYAPALPVRLEAAAPEPDEAFLAFG--PDQF 263 Query: 260 IENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 I LNLS TG L EAA NLF ++ D GA IA +P GLG AIN+RL RAA Sbjct: 264 IRGGRERLNLSPTGDLHEAAANLFAMLRALDKPGARGIAVMPVPETGLGAAINDRLRRAA 323 Query: 320 APR 322 APR Sbjct: 324 APR 326 >gi|157964998|ref|YP_001499822.1| Sua5/YciO/YrdC/YwlC family translation factor protein [Rickettsia massiliae MTU5] gi|157844774|gb|ABV85275.1| Sua5/YciO/YrdC/YwlC family putative translation factor protein [Rickettsia massiliae MTU5] Length = 312 Score = 202 bits (515), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 126/315 (40%), Positives = 178/315 (56%), Gaps = 13/315 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + KA +F+ +G + PTETVYG+ D+ N A ++++ K+RPA+NPLI HVS I K Sbjct: 2 INKAVQFIKSGKVVVFPTETVYGIGADATNNEACLKIFQFKERPAINPLIVHVSSIEQAK 61 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 + ++ L+ +A+ FW GPL++V+ L +I P TA L T R+P +LI Sbjct: 62 EIGELNDLATKIAEKFWSGPLSIVVPLKENANIAPSVTAGLNTIALRIPSYPVALELIRQ 121 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI--SKIGLESTIVNVQCEKK 188 G P+A PSAN + IS TN +H+ + I+ I SK GLESTI++ Sbjct: 122 SGIPIAAPSANPANYISPTNAEHVTKHFKDNQEIFILAPEIYQSKYGLESTIIDTTTVTP 181 Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248 ILR G + E L + +E+ ETST ++PGML HY+P+ VRL AI++ +E Sbjct: 182 T-ILREGFITAEILGEILGIEV-LKASETSTIKAPGMLAKHYSPKVPVRLNAINLEDKEI 239 Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS----SIAFSSIPN 304 + FGN + SLNLS G EAA NL+ Y++I DD AS IA S IP Sbjct: 240 GLNFGNSNL----TGRFSLNLSVKGNFIEAAANLYAYLRILDDYAASHDVRGIAVSPIPQ 295 Query: 305 HGLGIAINNRLERAA 319 +G AIN+RL+RAA Sbjct: 296 VNIGAAINDRLKRAA 310 >gi|326386145|ref|ZP_08207769.1| translation factor SUA5 [Novosphingobium nitrogenifigens DSM 19370] gi|326209370|gb|EGD60163.1| translation factor SUA5 [Novosphingobium nitrogenifigens DSM 19370] Length = 320 Score = 202 bits (514), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 126/312 (40%), Positives = 171/312 (54%), Gaps = 12/312 (3%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 A+ +A E + G +A+PTETVYGLA + A+ +Y K RP NPLI HV+DI+ Sbjct: 20 AIVRAAEVIREGGLVAVPTETVYGLAARADRDEAVAGIYRAKGRPDFNPLIVHVADIAGA 79 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 ++ A +D + L + FWPGPLTLV+ + +A L T R P + LIE Sbjct: 80 ERLAHLDATARKLIEAFWPGPLTLVVPRREDAGLSAAVSAGLPTVALRCPAHPVMRALIE 139 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PLA PSANRSG +S T H+ SS+ + LI+DGG GLESTIV V+ + Sbjct: 140 AAGVPLAAPSANRSGGVSPTTADHVF-SSLGHRVDLILDGGTCARGLESTIVGVRPGGRW 198 Query: 190 RILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREAL 249 +LRPG ++ ETL + E E ++PG L SHYAP VRL A E + Sbjct: 199 TLLRPGPIDRETLAALLGHENEEMA--RGGIEAPGQLASHYAPGKPVRLGADAPEADEFM 256 Query: 250 IRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGI 309 I FG P+K ++LS++G EAA L+ + + S IA ++IP G+G Sbjct: 257 IGFG--PVKG------DVSLSESGDPAEAAARLYACLHAGAAAPQSRIAIAAIPGEGIGE 308 Query: 310 AINNRLERAAAP 321 AIN+RL RAA P Sbjct: 309 AINDRLRRAAVP 320 >gi|162149092|ref|YP_001603553.1| hypothetical protein GDI_3322 [Gluconacetobacter diazotrophicus PAl 5] gi|161787669|emb|CAP57265.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus PAl 5] Length = 338 Score = 202 bits (514), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 126/315 (40%), Positives = 175/315 (55%), Gaps = 13/315 (4%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 +A + L AG +A TETVYGL D+ N TA+ R++ K+RP NPLI H D Sbjct: 29 RAADLLRAGGLVAFGTETVYGLGADATNDTAVARIFAAKERPRFNPLISHFPDAEAAFAQ 88 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132 A+ + ++ LA+ FWPGPLT+VL + I L+ A L + RVP G T L+ G Sbjct: 89 AAPNDVARRLAERFWPGPLTMVLPRQPGSTISDLAAAGLPSVAVRVPRGAITTALLRAVG 148 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192 P+A PSAN SG++S ++ H+L + I ++D G +G+EST++++ + +L Sbjct: 149 RPVAAPSANLSGRVSPSDAYHVL-RGLSGRIDAVLDSGPCPVGVESTVLDLTGTAPM-LL 206 Query: 193 RPGGLEIETLKRAISVELEYCVDETST-PQSPGMLKSHYAPRSQVRLRAIHVNPREALIR 251 RPGG+ +E L + + + D T P SPG L SHYAP VRL A V EAL+ Sbjct: 207 RPGGVTVEALSE-VCGPISHPDDYADTLPLSPGRLASHYAPGLPVRLDAHDVAADEALLA 265 Query: 252 FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS----SIAFSSIPNHGL 307 FG + A + NLS G+L EAA LF ++ D GA IA IP GL Sbjct: 266 FG----PELPGAGLVWNLSPAGRLDEAAARLFAGLRFLDSEGARRGLVRIAAMPIPRVGL 321 Query: 308 GIAINNRLERAAAPR 322 G+AI +RL RAA+PR Sbjct: 322 GMAIRDRLRRAASPR 336 >gi|209545165|ref|YP_002277394.1| Sua5/YciO/YrdC/YwlC family protein [Gluconacetobacter diazotrophicus PAl 5] gi|209532842|gb|ACI52779.1| Sua5/YciO/YrdC/YwlC family protein [Gluconacetobacter diazotrophicus PAl 5] Length = 323 Score = 201 bits (512), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 126/315 (40%), Positives = 175/315 (55%), Gaps = 13/315 (4%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 +A + L AG +A TETVYGL D+ N TA+ R++ K+RP NPLI H D Sbjct: 14 RAADLLRAGGLVAFGTETVYGLGADATNDTAVARIFAAKERPRFNPLISHFPDAEAAFAQ 73 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132 A+ + ++ LA+ FWPGPLT+VL + I L+ A L + RVP G T L+ G Sbjct: 74 AAPNDVARRLAERFWPGPLTMVLPRQPGSTISDLAAAGLPSVAVRVPRGAITTALLRAVG 133 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192 P+A PSAN SG++S ++ H+L + I ++D G +G+EST++++ + +L Sbjct: 134 RPVAAPSANLSGRVSPSDAYHVL-RGLSGRIDAVLDSGPCPVGVESTVLDLTGTAPM-LL 191 Query: 193 RPGGLEIETLKRAISVELEYCVDETST-PQSPGMLKSHYAPRSQVRLRAIHVNPREALIR 251 RPGG+ +E L + + + D T P SPG L SHYAP VRL A V EAL+ Sbjct: 192 RPGGVTVEALSE-VCGPISHPDDYADTLPLSPGRLASHYAPGLPVRLDAHDVAADEALLA 250 Query: 252 FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS----SIAFSSIPNHGL 307 FG + A + NLS G+L EAA LF ++ D GA IA IP GL Sbjct: 251 FG----PELPGAGLVWNLSPAGRLDEAAARLFAGLRFLDSEGARRGLVRIAAMPIPRVGL 306 Query: 308 GIAINNRLERAAAPR 322 G+AI +RL RAA+PR Sbjct: 307 GMAIRDRLRRAASPR 321 >gi|34581094|ref|ZP_00142574.1| hypothetical protein [Rickettsia sibirica 246] gi|229587215|ref|YP_002845716.1| Sua5/YciO/YrdC/YwlC family putative translation factor protein [Rickettsia africae ESF-5] gi|28262479|gb|EAA25983.1| unknown [Rickettsia sibirica 246] gi|228022265|gb|ACP53973.1| Sua5/YciO/YrdC/YwlC family putative translation factor protein [Rickettsia africae ESF-5] Length = 312 Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 126/315 (40%), Positives = 176/315 (55%), Gaps = 13/315 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + KA +F+ +G + PTETVYG+ D+ N A ++++ K+RPA+NPLI HVS I K Sbjct: 2 INKAVQFIKSGKVVVFPTETVYGIGADATNNEACLKIFQFKERPAINPLIVHVSSIEQAK 61 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 + D L+ +A+ FW GPL++V+ L +I P TA L T R+P +LI Sbjct: 62 EIGEFDDLATKIAEKFWSGPLSIVVPLKENANIAPSVTAGLNTIALRIPSYPVALELIRQ 121 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI--SKIGLESTIVNVQCEKK 188 G P+A PSAN S IS TN +H+ + I+ I SK GLESTI++ Sbjct: 122 SGIPIAAPSANPSNYISPTNAEHVTKHFKDNQEIFILAPEIYQSKYGLESTIIDTTTVTP 181 Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248 ILR G + E L + +E+ ETST ++ GML HY+P+ VRL AI++ +E Sbjct: 182 T-ILREGFITAEILGEILGIEV-LKASETSTIKASGMLAKHYSPKVPVRLNAINLEDKEI 239 Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS----SIAFSSIPN 304 + F N + SLNLS G EAA NL+ Y++I DD AS IA S IP Sbjct: 240 GLNFSNSNL----TGRFSLNLSVKGDFIEAAANLYAYLRILDDYAASHDVRGIAVSPIPQ 295 Query: 305 HGLGIAINNRLERAA 319 +G+AIN+RL+RAA Sbjct: 296 VNIGVAINDRLKRAA 310 >gi|238651093|ref|YP_002916951.1| hypothetical protein RPR_07435 [Rickettsia peacockii str. Rustic] gi|238625191|gb|ACR47897.1| hypothetical protein RPR_07435 [Rickettsia peacockii str. Rustic] Length = 312 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 126/315 (40%), Positives = 176/315 (55%), Gaps = 13/315 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + KA +F+ +G + PTETVYG+ D+ N A ++++ K+RPA+NPLI HVS I K Sbjct: 2 INKAVQFIKSGKVVVFPTETVYGIGADATNNEACLKIFQFKERPAINPLIVHVSSIEQAK 61 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 + D L+ +A+ FW GPL++V+ L +I P TA L T R+P +LI Sbjct: 62 EIGEFDDLATKIAEKFWSGPLSIVVPLKENANIAPSVTAGLNTIALRIPSYPVALELIRQ 121 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI--SKIGLESTIVNVQCEKK 188 G P+A PSAN S IS TN +H+ + I+ I SK GLESTI++ Sbjct: 122 SGIPIAAPSANPSNYISPTNAEHVTKHFKDNQEIFILAPEIYQSKYGLESTIIDTTTVTP 181 Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248 ILR G + E L + +E+ ETST ++ GML HY+P+ VRL AI++ +E Sbjct: 182 T-ILREGFITAEILGEILGIEV-LKASETSTIKASGMLAKHYSPKVPVRLNAINLEDKEI 239 Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS----SIAFSSIPN 304 + F N + +SLNLS G EAA NL+ Y++I DD AS IA S IP Sbjct: 240 GLNFSNSNL----TGRVSLNLSVKGDFIEAAANLYAYLRILDDYAASHDVRGIAVSPIPQ 295 Query: 305 HGLGIAINNRLERAA 319 +G AIN+RL+RAA Sbjct: 296 VNIGAAINDRLKRAA 310 >gi|103487254|ref|YP_616815.1| Sua5/YciO/YrdC/YwlC [Sphingopyxis alaskensis RB2256] gi|98977331|gb|ABF53482.1| translation factor SUA5 [Sphingopyxis alaskensis RB2256] Length = 315 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 121/299 (40%), Positives = 165/299 (55%), Gaps = 13/299 (4%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81 G P+A+PTETVYGLA D+R+ + R+Y K RP NPLI HV +++ + Sbjct: 28 GQPVAVPTETVYGLAADARSADGVARIYAAKGRPDFNPLIVHVPNLAAAETLGQFGAAER 87 Query: 82 HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140 LA FWPGPLTLV+ ++ + ++TA L T RVP + L+ G PLA PSA Sbjct: 88 ALATRFWPGPLTLVVPRVAGCPVASIATAGLDTIALRVPGHRAMQALLAGTGAPLAAPSA 147 Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200 N SG++S T H+L +S+ I L+ID G ++ G+ESTI VQ + + +LRPG + Sbjct: 148 NASGRVSPTRADHVL-ASLDGRIALVIDDGPTRAGVESTIARVQ-DGAIEVLRPGPVTAA 205 Query: 201 TLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNI 260 L A++ L + S +PGML SHYAP VRL A+ E I FG + Sbjct: 206 ML--AMASGLPVIERKGSDIVAPGMLASHYAPGKPVRLGAVEFADDEFGIGFGGL----- 258 Query: 261 ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 +LS G L EAA LF+ + S +IA ++IP GLG AIN+RL RAA Sbjct: 259 ---AGDYDLSAAGDLTEAAARLFDALHAGAASAKPNIAVAAIPVEGLGAAINDRLARAA 314 >gi|15893238|ref|NP_360952.1| hypothetical protein RC1315 [Rickettsia conorii str. Malish 7] gi|15620456|gb|AAL03853.1| unknown [Rickettsia conorii str. Malish 7] Length = 312 Score = 200 bits (508), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 126/315 (40%), Positives = 175/315 (55%), Gaps = 13/315 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + KA +F+ +G + PTETVYG+ D+ N A ++++ K+RPA+NPLI HVS I K Sbjct: 2 INKAVQFIKSGKVVVFPTETVYGIGADATNNEACLKIFQFKERPAINPLIVHVSSIEQAK 61 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 + D L+ +A+ FW GPL++V+ L +I P TA L T R+P +LI Sbjct: 62 EIGEFDDLATKIAEKFWSGPLSIVVPLKENANIAPSVTAGLNTIALRIPSYPVALELIRQ 121 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI--SKIGLESTIVNVQCEKK 188 G P+A PSAN S IS TN +H+ + I+ I SK GLESTI++ Sbjct: 122 SGIPIAAPSANPSNYISPTNAEHVTKHFKDNQEIFILAPEIYQSKYGLESTIIDTTTVTP 181 Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248 ILR G + E L + +E+ ETST ++ GML HY+P+ VRL AI++ +E Sbjct: 182 T-ILREGFITAEILGEILGIEV-LKASETSTIKASGMLAKHYSPKVPVRLNAINLEDKEI 239 Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS----SIAFSSIPN 304 + F N + SLNLS G EAA NL+ Y++I DD AS IA S IP Sbjct: 240 GLNFSNSNL----TGRFSLNLSVKGDFIEAAANLYAYLRILDDYAASHDVRGIAVSPIPQ 295 Query: 305 HGLGIAINNRLERAA 319 +G AIN+RL+RAA Sbjct: 296 VNIGAAINDRLKRAA 310 >gi|157826326|ref|YP_001494046.1| hypothetical protein A1C_06575 [Rickettsia akari str. Hartford] gi|157800284|gb|ABV75538.1| hypothetical protein A1C_06575 [Rickettsia akari str. Hartford] Length = 312 Score = 199 bits (507), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 122/315 (38%), Positives = 176/315 (55%), Gaps = 13/315 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + KA +F+ +G + PTETVYG+ D+ N A ++++ K RPA NPLI HV I K Sbjct: 2 VSKAVQFIKSGKVVVFPTETVYGIGADATNNEACLKIFQFKNRPASNPLIVHVFSIEQAK 61 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 + + L++ +A+ FW GPL++V+ L +I P + A L T R+P +LI Sbjct: 62 EIGEFNDLAIKIAEKFWSGPLSIVVPLKENANIAPSAAAGLNTIALRIPSYPVALELIRQ 121 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI--SKIGLESTIVNVQCEKK 188 G P+A PSAN S IS TN +H+ + I+ I S+ GLESTI++ Sbjct: 122 SGVPIAAPSANPSNYISPTNAEHVTKHFKDNQEIFILAPEIYQSEYGLESTIIDTTTATP 181 Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248 ILR G + +E L+ + V++ ETS ++PGML HY+P+ +RL AI++ E Sbjct: 182 T-ILREGFITVEILEEVLRVKV-LKASETSAIKAPGMLAKHYSPKVPIRLNAINLEYNEI 239 Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGA----SSIAFSSIPN 304 + FGN + SLNLS G L EAA NL+ Y++I DD A S IA + IP Sbjct: 240 SVNFGNSNL----TGRFSLNLSTKGNLIEAAANLYAYLRILDDYAAAHDVSGIAVAPIPQ 295 Query: 305 HGLGIAINNRLERAA 319 +G AIN+RL+RAA Sbjct: 296 ENIGAAINDRLKRAA 310 >gi|87198152|ref|YP_495409.1| translation factor SUA5 [Novosphingobium aromaticivorans DSM 12444] gi|87133833|gb|ABD24575.1| translation factor SUA5 [Novosphingobium aromaticivorans DSM 12444] Length = 315 Score = 199 bits (505), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 120/314 (38%), Positives = 179/314 (57%), Gaps = 12/314 (3%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D++ L A + + AG +A+PTETVYGLA + + A+ +Y K RP NPLI HV D+ Sbjct: 13 DNHGLEHAAQVIAAGGTVAVPTETVYGLAARADDDAAVAGIYRAKGRPDFNPLIVHVPDV 72 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + + A D + LA FWPGPLT+VL + +A L T R P + Sbjct: 73 TAAEGLAVFDKRARALANAFWPGPLTMVLPRREGAALASAVSAGLPTVALRCPAHPVMQA 132 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L++ G PLA PSANRSG +S T+ H+ ++S+ + + LI+DGG ++ G+ESTIV ++ + Sbjct: 133 LLKNCGLPLAAPSANRSGGVSPTSAAHV-AASLGQRVDLILDGGETRQGIESTIVGMRDD 191 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246 ILRPG + ++ + + + V ++ ++PG L SHYAP VRL A Sbjct: 192 GTWAILRPGPITEASIAAVLGGKSD--VVTSAKIEAPGQLASHYAPGKPVRLNATQAGEG 249 Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306 E LI FG+V + +NLS +G L EAA L++ + + + +IA + IP+ G Sbjct: 250 EFLIGFGSV--------VGDVNLSTSGDLAEAAARLYSCLHLGAAASEPAIAVAPIPDEG 301 Query: 307 LGIAINNRLERAAA 320 +G AIN+RL RAAA Sbjct: 302 IGTAINDRLRRAAA 315 >gi|148259247|ref|YP_001233374.1| Sua5/YciO/YrdC/YwlC family protein [Acidiphilium cryptum JF-5] gi|146400928|gb|ABQ29455.1| translation factor SUA5 [Acidiphilium cryptum JF-5] Length = 322 Score = 198 bits (503), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 130/312 (41%), Positives = 178/312 (57%), Gaps = 11/312 (3%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 E L AG +A TETVYGL D+ N +A+ +YE K RP NPLI H D +HA+ Sbjct: 17 ELLRAGELVAFATETVYGLGADATNASAVAAIYEAKGRPRFNPLISHFPDADAAFRHAAA 76 Query: 77 DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPL 135 D + A+ FWPGPLTLVL +DI L+TA L + RVP G + L+ G P+ Sbjct: 77 DARAREAAQAFWPGPLTLVLPRRDESDIAALATAGLSSVAVRVPGHGIARALLAATGRPV 136 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 A PSANRSG++S T H++ + + I I++ G ++GLES IV++ V +LRPG Sbjct: 137 AAPSANRSGRLSPTRPAHVI-AGLEGRIAAILESGACEVGLESAIVDLTGATPV-LLRPG 194 Query: 196 GLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNV 255 G+ ETL+ A+ + + + ++PGML SHYAP +RL A EA + FG Sbjct: 195 GISRETLE-AVLGPVSIASEMGAAVKAPGMLASHYAPVLPMRLGATAPEDGEAWLGFG-- 251 Query: 256 PIKNIENAIISLNLSKTGKLKEAAFNLFNYM----KIADDSGASSIAFSSIPNHGLGIAI 311 I+ +S NLS G L EAA LF+ + A+ +G IA + +P GLG AI Sbjct: 252 -IEPPTLPPVSRNLSPAGDLVEAAARLFDSLHELDAAAELAGLQRIAVARVPERGLGAAI 310 Query: 312 NNRLERAAAPRN 323 N+RL RAAAPR+ Sbjct: 311 NDRLARAAAPRS 322 >gi|67459737|ref|YP_247361.1| putative translation factor protein [Rickettsia felis URRWXCal2] gi|67005270|gb|AAY62196.1| Putative translation factor protein [Rickettsia felis URRWXCal2] Length = 361 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 124/315 (39%), Positives = 176/315 (55%), Gaps = 14/315 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 KA +F+ +G + PTETVYG+ D+ N A ++++ K RPA+NPLI HVS I K Sbjct: 52 FSKAVQFIKSGKVVVFPTETVYGIGADATNNEACLKIFQFKNRPAINPLIVHVSSIEQAK 111 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 + + L+ +A+ FWPGPL++V+ L +I P TA L T R+P +LI Sbjct: 112 EIGEFNDLATKIAEKFWPGPLSIVVSLKENANIAPSVTAGLNTIAIRIPSYPLALELIRQ 171 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI--SKIGLESTIVNVQCEKK 188 G P+A PSAN S IS TN +H+ + I+ I S+ GLESTI++ Sbjct: 172 SGVPIAAPSANPSNYISPTNAEHVTKHFKDNQEIFILAPEIYQSEYGLESTIIDTTTATP 231 Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248 ILR G + E L+ + V++ ++ ++PGML HY+P VRL A ++ RE Sbjct: 232 T-ILREGFITAEILEEVLGVKVFKVTNDVV--KAPGMLAKHYSPNVPVRLNATNLEDREI 288 Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS----SIAFSSIPN 304 + FGN N+ SLNLS G+L EAA NL+ Y++I DD AS IA + IP Sbjct: 289 GLNFGN---SNLTGK-FSLNLSLKGELIEAAANLYAYLRILDDYAASHDVRGIAVAPIPR 344 Query: 305 HGLGIAINNRLERAA 319 +G AIN+RL+RAA Sbjct: 345 VNIGAAINDRLKRAA 359 >gi|157829148|ref|YP_001495390.1| hypothetical protein A1G_07205 [Rickettsia rickettsii str. 'Sheila Smith'] gi|157801629|gb|ABV76882.1| hypothetical protein A1G_07205 [Rickettsia rickettsii str. 'Sheila Smith'] Length = 311 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 125/315 (39%), Positives = 175/315 (55%), Gaps = 13/315 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + KA +F+ +G + PTETVYG+ D+ N A ++++ K+RPA+NPLI HVS I K Sbjct: 2 INKAVQFIKSGKVVVFPTETVYGIGADATNNEACLKIFQFKERPAINPLIVHVSSIEQAK 61 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 + D L+ +A+ FW GPL++V+ L +I P TA L T R+P +LI+ Sbjct: 62 EIGEFDDLATKIAEKFWSGPLSIVVPLKENANIAPSVTAGLNTIALRIPSYPVALELIKQ 121 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI--SKIGLESTIVNVQCEKK 188 G P+A PSAN S IS TN +H+ + I+ I SK GLESTI++ Sbjct: 122 SGIPIAAPSANPSNYISPTNAEHVTKHFKDNQEIFILAPEIYQSKYGLESTIIDTTTVTP 181 Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248 ILR G + E L + +E+ ETS ++ GML HY+P+ VRL AI++ +E Sbjct: 182 T-ILREGFITAEILGEILGIEV-LKASETSIIKASGMLAKHYSPKVPVRLNAINLEDKEI 239 Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS----SIAFSSIPN 304 + F N + SLNLS G EAA NL+ Y++I DD AS IA S IP Sbjct: 240 GLNFSNSNL----TGRFSLNLSVKGDFIEAAANLYAYLRILDDYAASHDVRGIAVSPIPQ 295 Query: 305 HGLGIAINNRLERAA 319 +G AIN+RL+RAA Sbjct: 296 VNIGAAINDRLKRAA 310 >gi|311745837|ref|ZP_07719622.1| Sua5/YciO/YrdC/YwlC family protein [Algoriphagus sp. PR1] gi|126576040|gb|EAZ80318.1| Sua5/YciO/YrdC/YwlC family protein [Algoriphagus sp. PR1] Length = 321 Score = 197 bits (500), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 131/316 (41%), Positives = 178/316 (56%), Gaps = 15/316 (4%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 KA FLD G +AIPTETVYGLA ++ NP A+ ++E K RP+ +PLI H S + VK Sbjct: 10 KAKRFLDEGKLVAIPTETVYGLAGNALNPLAVASIFETKNRPSFDPLIIHTSSMDRVKDF 69 Query: 74 ASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCG-FTKKLIET 130 P L+ L K WPGPLTL LL I P L T+ L R+P T +L+E+ Sbjct: 70 VEEIPDPLYKLGKSIWPGPLTL---LLPRKAIIPDLVTSGLDRVAIRIPNHPLTLELLES 126 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 PLA PSAN G IS T +H+ + + IP I+DGG ++GLESTIV ++ E +V Sbjct: 127 LDFPLAAPSANPFGYISPTQPRHV-EAQLGDSIPYILDGGNCQVGLESTIVGME-EGQVV 184 Query: 191 ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALI 250 I R GGLE+ ++ I ++ TS PQ+PG+L SHYAPR L + + + + Sbjct: 185 IYRLGGLELNEIEDLIG-PVQVKSHSTSNPQAPGLLASHYAPRKPFVLGDLDLLIEKYSL 243 Query: 251 RFGNVPIKNIENAIIS------LNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPN 304 + + ++E + + LSK G LKEAA NLF M+ D+ I +P Sbjct: 244 EGTSFALISLEKSFSDIPEAHQIALSKNGDLKEAAKNLFASMRQLDELDVEVILAEKMPA 303 Query: 305 HGLGIAINNRLERAAA 320 GLG AIN+RL+RAAA Sbjct: 304 KGLGQAINDRLKRAAA 319 >gi|157804239|ref|YP_001492788.1| bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase [Rickettsia canadensis str. McKiel] gi|157785502|gb|ABV74003.1| bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase [Rickettsia canadensis str. McKiel] Length = 312 Score = 196 bits (499), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 121/315 (38%), Positives = 180/315 (57%), Gaps = 13/315 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + KA +F+ +G + PTETVYG+ D+ N A ++++ K RPA+NPLI HV+ I K Sbjct: 2 INKAVQFIKSGKVVVFPTETVYGIGADATNNEACLKIFQFKNRPAINPLIVHVASIEQAK 61 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 + + L+ +A+ FW GPL++V+ L +I TA L T R+P +LI Sbjct: 62 EIGEFNDLATKIAEKFWSGPLSIVVPLKKNVNIALSVTAGLNTIAIRMPSYPLALELIRQ 121 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI--SKIGLESTIVNVQCEKK 188 G P+A PSAN S IS TN +H+ E I+ I S+ GLESTI++ Sbjct: 122 SGKPIAAPSANPSNYISPTNAEHVTKHFKDNEEIFILAPEIYQSEYGLESTIIDTTTATP 181 Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248 +LR G + E L++ +E+ ETST ++PGML HY+P+ +RL A ++ +E Sbjct: 182 T-LLREGFIMSEVLEKTFGIEI-LKASETSTIKAPGMLAKHYSPKVPIRLNATNLEDKEI 239 Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS----IAFSSIPN 304 + FGN +N++ + LNLS G L EAA NL+ Y++I DD AS IA + +P+ Sbjct: 240 GLNFGN---RNLKGRFL-LNLSPKGDLIEAAANLYAYLRILDDYAASHDIEYIAVAPVPS 295 Query: 305 HGLGIAINNRLERAA 319 +G AIN+RL+RAA Sbjct: 296 VNIGAAINDRLKRAA 310 >gi|149185276|ref|ZP_01863593.1| putative translation factor [Erythrobacter sp. SD-21] gi|148831387|gb|EDL49821.1| putative translation factor [Erythrobacter sp. SD-21] Length = 312 Score = 196 bits (498), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 121/316 (38%), Positives = 171/316 (54%), Gaps = 18/316 (5%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 D + +A E L AG +A+PTETVYGLA + + A+ +YE K RP+ NPLI HV+ Sbjct: 12 ADKGGMARAAEILRAGGLVAVPTETVYGLAARADDMAAVSLIYEAKGRPSFNPLIVHVAS 71 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + + + A P + LA+ WPGPLTLVL + + TA L+T R+P + Sbjct: 72 MKVARNLAEFSPEAEALAEAHWPGPLTLVLPSRTDAKLADTVTAGLETVAVRMPNHPIMR 131 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 K++++ PLA PSANRSG IS T +H+L +S+ I ++DGG + G+ESTI V+ Sbjct: 132 KILQSVDVPLAAPSANRSGFISPTTAEHVL-TSLDGRIDAVLDGGECRAGVESTIAAVRA 190 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245 + +V +LRPG ++++ A D ++PG L SHYAP VRL I Sbjct: 191 DGRVEVLRPGPVQLDAGAMA--------QDGVGKIEAPGQLASHYAPGKPVRLDVIRSVE 242 Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305 E I FG V +LS G L+EAA L+ + S IA + IP Sbjct: 243 DEFYIGFGKV--------TGDCSLSVGGDLEEAASRLYACLHEGAASHKPRIAIAPIPAE 294 Query: 306 GLGIAINNRLERAAAP 321 G+G AIN+R+ RAA P Sbjct: 295 GIGRAINDRIRRAATP 310 >gi|85375447|ref|YP_459509.1| putative translation factor [Erythrobacter litoralis HTCC2594] gi|84788530|gb|ABC64712.1| putative translation factor [Erythrobacter litoralis HTCC2594] Length = 314 Score = 195 bits (495), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 120/314 (38%), Positives = 168/314 (53%), Gaps = 13/314 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + + +A ++AG +A+PTETVYGLA + +P A+ +Y K RP+ NPLI HV D Sbjct: 13 DRHGVAQAARIINAGGLVAVPTETVYGLAARADDPDAVAAIYAAKGRPSFNPLIVHVLDP 72 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + + +D + LA FWPGPLT+VL L D+ TA L T RVP ++ Sbjct: 73 AAAGRLVEMDDKAQALAGRFWPGPLTMVLPLRDAADVAGAVTAGLPTLAVRVPAHPLMRE 132 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+ PLA PSAN S +S T+ H+L ++ I ++DGG GLESTIV ++ + Sbjct: 133 LLTLAEAPLAAPSANVSESVSPTSPGHVL-KTLDGRIDAVLDGGECIAGLESTIVALRGD 191 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246 +LRPG + E L A+ E T ++PG L HY+P VRL A+ Sbjct: 192 GAWSLLRPGPIAKEALIEALGAEPSGT---TEGVEAPGQLARHYSPGKPVRLGAVEAAED 248 Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306 E L+ FGN +LS +G EAA L+ + +S + IA + IP+ G Sbjct: 249 EFLLGFGNT--------AGDWSLSDSGDPAEAAARLYAGLHRGAESDKARIAVAPIPDEG 300 Query: 307 LGIAINNRLERAAA 320 LG AIN+RL RAAA Sbjct: 301 LGAAINDRLRRAAA 314 >gi|89056386|ref|YP_511837.1| translation factor SUA5 [Jannaschia sp. CCS1] gi|88865935|gb|ABD56812.1| translation factor SUA5 [Jannaschia sp. CCS1] Length = 314 Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 124/320 (38%), Positives = 173/320 (54%), Gaps = 26/320 (8%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + +A E L G +A+PTETVYGLA D+RN A+ R++ K RP NPLI HV + Sbjct: 12 DVAGIARAAEVLRDGGLLALPTETVYGLAADARNGAAVARIFAAKGRPTFNPLIVHVVSL 71 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 ++ V+ + LAK FWPGP+TLVL S + L + L T RVP + Sbjct: 72 ETAEELVEVNAQAHALAKAFWPGPMTLVLP--SKGRVADLISGGLDTLAVRVPAHPLARA 129 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 ++ +G P+A PSAN SGQIS T H++ + + + ++DGG +GLESTI+ E Sbjct: 130 VLGAFGGPVAAPSANPSGQISPTMAAHVV-AGLGSAVEAVLDGGACGVGLESTIL-APSE 187 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTP---QSPGMLKSHYAPRSQVRLRAIHV 243 VR+LR GG+ E ++ + V TP ++PG ++ HYAPR+QV L ++ Sbjct: 188 GGVRLLREGGVSREAVEAVVG-----PVVADLTPGRIEAPGQMERHYAPRTQVVLGSV-A 241 Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD----DSGASSIAF 299 P + +I FG V LS+ G L EAA LF + AD GA I Sbjct: 242 TPGDVMIGFGAVGGD--------FTLSERGDLVEAAERLFATLHAADTLALTRGAQVIRV 293 Query: 300 SSIPNHGLGIAINNRLERAA 319 + +P GLG AIN+RL RAA Sbjct: 294 AEVPEVGLGRAINDRLRRAA 313 >gi|91206173|ref|YP_538528.1| putative translation factor protein [Rickettsia bellii RML369-C] gi|91069717|gb|ABE05439.1| Putative translation factor protein [Rickettsia bellii RML369-C] Length = 312 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 117/315 (37%), Positives = 180/315 (57%), Gaps = 13/315 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A +F+ +G + PTETVYG+ D+ N A ++++ K RPA+NPLI HVS I K Sbjct: 2 IKQAVQFITSGKVVVFPTETVYGIGADATNQEACLKIFQFKNRPAVNPLIVHVSSIEQAK 61 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 + + ++ +A+ FW GPL++V+ L ++ TA LKT R+P +LI+ Sbjct: 62 EIGDFNYIAEKIAEKFWSGPLSIVVPLKENANVATAVTAGLKTIAIRIPSHPLALELIKQ 121 Query: 131 YGHPLAIPSANRSGQISITNVKHILSS-SICKEIPLIIDGGI-SKIGLESTIVNVQCEKK 188 G P+A PSAN S IS T + H+ +EI ++ D SK GLESTIV+ + Sbjct: 122 SGKPIAAPSANPSNYISPTRLDHVTRHFKENEEIFILTDKDYQSKYGLESTIVDTTADIP 181 Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248 ILR G + E L+ + +++ + ++PGML+ HY+P +RL A ++N +E Sbjct: 182 T-ILREGFITAEVLETVLDIKINKASKNINI-KAPGMLEKHYSPTVSIRLNATNLNDKEI 239 Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS----SIAFSSIPN 304 + FG+ +K SLNLS G L EAA NL+ Y+++ DD A+ IA + IP Sbjct: 240 GLNFGDSNLK----GEYSLNLSSKGDLTEAAANLYAYLRLLDDYAAAHNIEHIAVAPIPT 295 Query: 305 HGLGIAINNRLERAA 319 +G AIN+RL+RAA Sbjct: 296 INIGAAINDRLKRAA 310 >gi|326402400|ref|YP_004282481.1| hypothetical protein ACMV_02520 [Acidiphilium multivorum AIU301] gi|325049261|dbj|BAJ79599.1| hypothetical protein ACMV_02520 [Acidiphilium multivorum AIU301] Length = 322 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 128/312 (41%), Positives = 176/312 (56%), Gaps = 11/312 (3%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 E L AG +A TETVYGL D+ N +A+ +YE K RP NPLI H D +HA+ Sbjct: 17 ELLRAGELVAFATETVYGLGADATNASAVAAIYEAKGRPRFNPLISHFPDADAAFRHAAA 76 Query: 77 DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPL 135 D + A+ FWPGPLTLVL +DI L+TA L + RVP G + L+ G P+ Sbjct: 77 DARAREAAQAFWPGPLTLVLPRRDESDIAALATAGLSSVAVRVPGHGIARALLAATGRPV 136 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 A PSANRSG++S T H++ + + I I++ G ++GLES IV++ V +LRPG Sbjct: 137 AAPSANRSGRLSPTRPAHVI-AGLEGRIAAILESGACEVGLESAIVDLTGATPV-LLRPG 194 Query: 196 GLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNV 255 G+ E L+ A+ + + + ++PGML SHYAP +RL A EA + FG Sbjct: 195 GISREALE-AVLGPVSIASEMGAAVKAPGMLASHYAPVLPMRLGATAPEDGEAWLGFG-- 251 Query: 256 PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS----IAFSSIPNHGLGIAI 311 I+ +S NLS G L EAA LF+ + D + + IA + +P GLG AI Sbjct: 252 -IEPPTLPPVSRNLSPAGDLVEAAARLFDSLHELDAAAGLARLRRIAVARVPERGLGAAI 310 Query: 312 NNRLERAAAPRN 323 N+RL RAAAPR+ Sbjct: 311 NDRLARAAAPRS 322 >gi|157826525|ref|YP_001495589.1| putative translation factor protein [Rickettsia bellii OSU 85-389] gi|157801829|gb|ABV78552.1| Putative translation factor protein [Rickettsia bellii OSU 85-389] Length = 312 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 117/315 (37%), Positives = 180/315 (57%), Gaps = 13/315 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A +F+ +G + PTETVYG+ D+ N A ++++ K RPA+NPLI HVS I K Sbjct: 2 IKQAVQFITSGKVVVFPTETVYGIGADATNQEACLKIFQFKNRPAVNPLIVHVSSIEQAK 61 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 + + ++ +A+ FW GPL++V+ L ++ TA LKT R+P +LI+ Sbjct: 62 EIGEFNYIAEKIAEKFWSGPLSIVVPLKENANVATAVTAGLKTIAIRIPSHPLALELIKQ 121 Query: 131 YGHPLAIPSANRSGQISITNVKHILSS-SICKEIPLIIDGGI-SKIGLESTIVNVQCEKK 188 G P+A PSAN S IS T + H+ +EI ++ D SK GLESTIV+ + Sbjct: 122 SGKPIAAPSANPSNYISPTRLDHVTRHFKENEEIFILTDKDYQSKYGLESTIVDTTADIP 181 Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248 ILR G + E L+ + +++ + ++PGML+ HY+P +RL A ++N +E Sbjct: 182 T-ILREGFITAEVLETVLDIKINKASKNINI-KAPGMLEKHYSPTVSIRLNATNLNDKEI 239 Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS----SIAFSSIPN 304 + FG+ +K SLNLS G L EAA NL+ Y+++ DD A+ IA + IP Sbjct: 240 GLNFGDSNLK----GEYSLNLSSKGDLTEAAANLYAYLRLLDDYAAAHNIEHIAVAPIPT 295 Query: 305 HGLGIAINNRLERAA 319 +G AIN+RL+RAA Sbjct: 296 INIGAAINDRLKRAA 310 >gi|163795817|ref|ZP_02189781.1| Putative translation factor [alpha proteobacterium BAL199] gi|159178850|gb|EDP63386.1| Putative translation factor [alpha proteobacterium BAL199] Length = 320 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 123/318 (38%), Positives = 174/318 (54%), Gaps = 11/318 (3%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + D +A +A L +G +A PTETVYGL D+ + A+ ++ K RP NPLI HV Sbjct: 12 VDDPDARAEAAGLLRSGALVAFPTETVYGLGADATDEDAVAGIFAAKDRPRFNPLISHVP 71 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFT 124 + LA WPGPLT+VL I L++A L+T RVP Sbjct: 72 TADAAFALGQATEAAKRLAATHWPGPLTMVLQRRPGCPIAWLTSAGLETVALRVPGSAAA 131 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + L+ G P+A PSANRSG++S T H+ + + + LI+DGG +GLEST+V++ Sbjct: 132 RSLLAEVGRPVAAPSANRSGRVSPTTAAHV-AEELGGRVALILDGGPCPVGLESTVVDLS 190 Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244 ++ R+LRPG + E ++ A+ ++ V E +PGML SHYAP++ VRL A Sbjct: 191 GDRP-RLLRPGAVTREQIE-ALLGPIDLAV-EGDAITAPGMLASHYAPKAPVRLNATDRR 247 Query: 245 PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPN 304 P EA + FG A +LS +G L AA LF ++ D G ++IA + +P Sbjct: 248 PGEAFLDFGAT------VAGADADLSPSGDLLAAAAKLFAALRALDRPGIAAIAVARVPV 301 Query: 305 HGLGIAINNRLERAAAPR 322 GLG AIN+RL RAAAPR Sbjct: 302 GGLGAAINDRLRRAAAPR 319 >gi|296116654|ref|ZP_06835264.1| hypothetical protein GXY_12643 [Gluconacetobacter hansenii ATCC 23769] gi|295976866|gb|EFG83634.1| hypothetical protein GXY_12643 [Gluconacetobacter hansenii ATCC 23769] Length = 335 Score = 192 bits (489), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 131/329 (39%), Positives = 178/329 (54%), Gaps = 25/329 (7%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + D + +A + L G +A TETVYGL D+ N A+ R++ K+RP NPLI H Sbjct: 18 VADRAGITRAADILRTGGLVAFGTETVYGLGADATNAVAVARIFAAKERPTFNPLISHFP 77 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT- 124 D + HA D + LA FWPGPLT+VL + I L+ A L + RVP T Sbjct: 78 DAAAAFVHAMADGRAHRLAHRFWPGPLTMVLPRAAGCAISDLAGAGLPSVAVRVPDSDTA 137 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + L+ G P+A PSAN SG +S + +H+L + +I I+D G +G+ESTIV++ Sbjct: 138 RALLAAAGVPVAAPSANPSGGVSPSRAEHVL-DGLEGKIDAILDSGPCAVGVESTIVDLT 196 Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVDETS-------TPQSPGMLKSHYAPRSQVR 237 V +LRPGG+ IE L+ E C D T+ P +PG L SHYAP VR Sbjct: 197 GTHPV-LLRPGGITIEALR-------EVCPDITTPHDTSDARPVAPGRLSSHYAPTLPVR 248 Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD----DSG 293 L A V P EAL+ FG + + ++ NLS+ KL+EAA LF ++ D G Sbjct: 249 LDAQTVAPDEALLAFG----AELPGSPLTWNLSQGEKLEEAAARLFAGLRFLDMEGRRRG 304 Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAAPR 322 +IA +P HGLG AI +RL RAA PR Sbjct: 305 LRAIAVQPVPTHGLGAAIGDRLSRAACPR 333 >gi|329889534|ref|ZP_08267877.1| SUA5 domain protein [Brevundimonas diminuta ATCC 11568] gi|328844835|gb|EGF94399.1| SUA5 domain protein [Brevundimonas diminuta ATCC 11568] Length = 312 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 122/307 (39%), Positives = 168/307 (54%), Gaps = 13/307 (4%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A E L G + +PTETVYGLA D+ NP A+ R++E K RP NPLI HV++ + A Sbjct: 15 AAEALKTGRLVILPTETVYGLAADASNPQAVARIFEAKGRPRFNPLIAHVANAVDAEAIA 74 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGH 133 D + LA+ FWPGPLT+V + + L+ A L + RVP + +I +G Sbjct: 75 VFDAKARALAEAFWPGPLTIVAPVRDRERVCDLARAGLDSVAVRVPGHPRARAVIGAFGG 134 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 P+ PSANRSG+ S T L + + + +DGG +G+EST+V+V + +V +LR Sbjct: 135 PVVAPSANRSGRPSPTTFGDALEET-GQAVGAAVDGGPCAVGVESTVVSV-LDGQVALLR 192 Query: 194 PGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFG 253 PG + E ++ A E +SPG L HYAP + VR+ A E L+ FG Sbjct: 193 PGSVTREEIEAAAGPLAEGGQGH----RSPGRLALHYAPDAPVRIEADGARDGEILLGFG 248 Query: 254 NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINN 313 + + S LS +G L+EAA NLF ++ AD S S IA S IP GLG AIN+ Sbjct: 249 ----AGVGDPRWS--LSPSGDLREAAANLFRLLREADRSKPSGIAVSPIPAKGLGEAIND 302 Query: 314 RLERAAA 320 RL RAA Sbjct: 303 RLRRAAG 309 >gi|114328864|ref|YP_746021.1| sua5/YciO/YrdC/YwlC family protein [Granulibacter bethesdensis CGDNIH1] gi|114317038|gb|ABI63098.1| sua5/YciO/YrdC/YwlC family protein [Granulibacter bethesdensis CGDNIH1] Length = 341 Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 120/321 (37%), Positives = 169/321 (52%), Gaps = 18/321 (5%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A L G +A PTETV+GL D+ A+ R++ K RP NPLICH+ D H Sbjct: 18 AGRLLRQGALVAFPTETVWGLGADATCADAVARIFAAKDRPRFNPLICHLPDAESAFTHG 77 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGH 133 D + LA FWPGPLT+VL + + L++A +T RVP ++++ G Sbjct: 78 IADDRARALAAAFWPGPLTMVLRRNPDSPVSLLASAGQETLALRVPALDLARRMLVAAGC 137 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 P+A PSANRSG++S T+ H++ + I ++DG +G+EST++++ + +LR Sbjct: 138 PVAAPSANRSGRVSPTSRDHVM-EGLAGRIDAVLDGPDCMVGVESTVIDLSGPSAI-LLR 195 Query: 194 PGGLEIETLKRAISVELEYCVDETSTPQ-------SPGMLKSHYAPRSQVRLRAIHVNPR 246 PGG+ E L+ I E SPGM++SHYAP VRL A+ V Sbjct: 196 PGGVSREALRDVIGDVTVLSAPEGGADGSREQVLLSPGMMRSHYAPSLTVRLDAVSVAAD 255 Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS----SIAFSSI 302 EAL+ FG + A + NLS G + EAA LF+ ++ D G IA + Sbjct: 256 EALLAFG----PPLPGAGLVWNLSAAGDVIEAATRLFSGLRTLDSKGRQRGLRGIACMRV 311 Query: 303 PNHGLGIAINNRLERAAAPRN 323 P GLG AIN+RL RAAAPR Sbjct: 312 PMQGLGEAINDRLARAAAPRE 332 >gi|15604678|ref|NP_221196.1| hypothetical protein RP848 [Rickettsia prowazekii str. Madrid E] gi|3861373|emb|CAA15272.1| unknown [Rickettsia prowazekii] gi|292572509|gb|ADE30424.1| Sua5/YciO/YrdC/YwlC family putative translation factor protein [Rickettsia prowazekii Rp22] Length = 313 Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 120/315 (38%), Positives = 174/315 (55%), Gaps = 12/315 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + KA +F+ +G + PTETVYG+ D+ N A ++++ K RPA+NPLI HV+ I K Sbjct: 2 INKAVQFIKSGKVVVFPTETVYGIGADATNNEACLKIFQFKNRPAINPLIVHVTSIVQAK 61 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 + L+ +A FWPGPL++V+ L +I P TA L T R+P LI Sbjct: 62 AIGEFNKLAEKIASKFWPGPLSIVVPLKDNVNIAPSVTAGLNTIALRIPSYPIALALIRQ 121 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK--IGLESTIVNVQCEKK 188 P+A PSAN S IS TN +H+ I+ I + GLESTI++ Sbjct: 122 SVVPIAAPSANPSNYISPTNAEHVTKHFKDNREIFILAPEIYQCEYGLESTIIDTTTVIP 181 Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248 ILR G + E L+ + V++ + S ++PGMLK HY+P VRL AI++N +E Sbjct: 182 T-ILREGFITSEILEELLGVKILKASEINSIVKAPGMLKKHYSPNVHVRLNAINLNDKEI 240 Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS----IAFSSIPN 304 + FGN N+ +LNLS G + EAA NL++Y++I DD S+ IA + +P Sbjct: 241 GLNFGN---SNLTGK-FALNLSTEGNIIEAAANLYSYLRILDDYAVSNDINCIAVAPVPL 296 Query: 305 HGLGIAINNRLERAA 319 +G AIN+RL+RAA Sbjct: 297 TNIGAAINDRLKRAA 311 >gi|255034046|ref|YP_003084667.1| Sua5/YciO/YrdC/YwlC family protein [Dyadobacter fermentans DSM 18053] gi|254946802|gb|ACT91502.1| Sua5/YciO/YrdC/YwlC family protein [Dyadobacter fermentans DSM 18053] Length = 349 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 132/327 (40%), Positives = 183/327 (55%), Gaps = 16/327 (4%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 I+++T S+ L A EFL G +AIPTETVYGLA ++ N A+ ++E+K RPA +PLI Sbjct: 31 NILAVTGSD-LSVAKEFLIKGELVAIPTETVYGLAGNALNEKAVLSIFEVKNRPAFDPLI 89 Query: 62 CHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRV 119 H + V + S P LA+ WPGPLTL LL DI P L T+ L T R+ Sbjct: 90 IHTDSLKKVAIYVSDVPEKARILAEKLWPGPLTL---LLPKKDIVPDLVTSGLDTVAVRI 146 Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T++L+ PLA PSAN G IS T H+ + IP I+DGG ++G+ES Sbjct: 147 PDHALTRELLAQLSFPLAAPSANPFGYISPTKPAHV-EQQLGDRIPYILDGGECEVGIES 205 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238 TIV + ++ + + R GGL+I ++ I + TS P++PGMLKSHYAPR + L Sbjct: 206 TIVGFENDETI-VYRLGGLDINEIESLIG-PVALMPHSTSDPKAPGMLKSHYAPRKPLHL 263 Query: 239 -RAIHVNPREA---LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGA 294 R + P +A + F + ++ L LS LKEAA NLF Y++ D Sbjct: 264 YRRDAITPGDAGTGYLLFDRY-LDGVDRRYQRL-LSPGHDLKEAAHNLFAYLRELDGLPV 321 Query: 295 SSIAFSSIPNHGLGIAINNRLERAAAP 321 S I +P GLG+AIN+RL+RA+ P Sbjct: 322 SEIKAELVPASGLGLAINDRLQRASVP 348 >gi|167648441|ref|YP_001686104.1| Sua5/YciO/YrdC/YwlC family protein [Caulobacter sp. K31] gi|167350871|gb|ABZ73606.1| Sua5/YciO/YrdC/YwlC family protein [Caulobacter sp. K31] Length = 296 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 121/302 (40%), Positives = 170/302 (56%), Gaps = 11/302 (3%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 + AG + +PTETVYGL D+ NP A+ ++E K RP NPLI HV+ + + A +D Sbjct: 1 MAAGGLVLLPTETVYGLGADAANPAAVAAIFEAKGRPRFNPLIAHVASLEDAARIAVLDE 60 Query: 79 LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAI 137 +L LA FWPGPLTLV + + L+ A L T RVP ++ ++ +G P+ Sbjct: 61 RALALAAAFWPGPLTLVAPIRDAAAVCDLARAGLDTVAIRVPGHPLSRAVLAAFGGPVVA 120 Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197 PSANRSG+ S T + + + K + +DGG ++GLEST+V V + R+LRPG + Sbjct: 121 PSANRSGRPSPTTFEDAFAETGDKAA-VALDGGPCQVGLESTVVAV-LDGPPRLLRPGAV 178 Query: 198 EIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPI 257 L+ + E E +SPG L HYAP + VR+ A EA + FG P+ Sbjct: 179 TRAQLEAVVGPLAEA---ENDARRSPGRLALHYAPDAPVRIDAARPEAGEAFLAFGPWPM 235 Query: 258 KNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLER 317 NLS TG L EAA NLF++++ AD S+IA ++IP+ GLG AIN+RL R Sbjct: 236 -----GAGVFNLSPTGDLAEAAANLFSFLRAADRLKPSAIAVAAIPHEGLGEAINDRLRR 290 Query: 318 AA 319 AA Sbjct: 291 AA 292 >gi|284036313|ref|YP_003386243.1| Sua5/YciO/YrdC/YwlC family protein [Spirosoma linguale DSM 74] gi|283815606|gb|ADB37444.1| Sua5/YciO/YrdC/YwlC family protein [Spirosoma linguale DSM 74] Length = 324 Score = 190 bits (482), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 124/318 (38%), Positives = 175/318 (55%), Gaps = 21/318 (6%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 KA EFL++G + IPTETVYGLA ++ + AI R++++K RP+ +PLI H I V + Sbjct: 10 KAKEFLESGNVVGIPTETVYGLAGNALDTNAILRIFQVKNRPSFDPLIVHTDSIDKVSQF 69 Query: 74 ASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETY 131 + P + LA+ FWPGPLTL+L S I L T+ L + R+P T L+ + Sbjct: 70 ITDIPEPARKLAEAFWPGPLTLLLPKQSL--IPDLVTSGLPSVAVRIPNHPLTLDLLRSL 127 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 PLA PSAN G IS T +H+ + + ++P I+DGG + +G+ESTIV + + Sbjct: 128 DFPLAAPSANPFGYISPTTAQHV-ADQLGDQVPYILDGGPAGVGIESTIVGFENNLPT-V 185 Query: 192 LRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA--- 248 R GG+ +E ++ I + TS PQ+PGML SHYAPR + L + +P+ Sbjct: 186 FRLGGMALEQIEAVIG-SVSVRTHSTSNPQAPGMLSSHYAPRKPLMLLSPGESPQPGERI 244 Query: 249 ---LIR--FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303 R FG +PI N LS TG L EAA NLF ++ D I +P Sbjct: 245 GALAFREPFGGIPISN------QRVLSPTGDLNEAAKNLFACLRELDTLSVDLIYAEPLP 298 Query: 304 NHGLGIAINNRLERAAAP 321 N GLG A+N+RL RA+ P Sbjct: 299 NTGLGSAMNDRLRRASVP 316 >gi|51474016|ref|YP_067773.1| hypothetical protein RT0837 [Rickettsia typhi str. Wilmington] gi|51460328|gb|AAU04291.1| conserved hypothetical protein [Rickettsia typhi str. Wilmington] Length = 313 Score = 190 bits (482), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 117/315 (37%), Positives = 172/315 (54%), Gaps = 12/315 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L KA +F+ +G + PTETVYG+ D+ N A ++++ K RP +NPLI HV+ I K Sbjct: 2 LNKAVQFIKSGKVVVFPTETVYGIGADATNNEACLKIFQFKNRPVINPLIVHVASIVQAK 61 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIET 130 + L+ +A+ FWPGPL++V+ L +I P TA L T R+P LI Sbjct: 62 AIGEFNKLAEKIARKFWPGPLSIVVPLKDNVNIAPSVTAGLNTIALRIPSYSIALALIRQ 121 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK--IGLESTIVNVQCEKK 188 P+A PSAN S IS TN +H+ I+ I + GLESTI++ Sbjct: 122 SVVPIAAPSANPSNYISPTNAEHVTKHFKDNREIFILSPEIYQCEYGLESTIIDTTTVIP 181 Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248 ILR G + E L+ + V++ + S ++PGML+ HY+P +RL AI++N +E Sbjct: 182 T-ILREGFITSEILEELLGVKILKASEINSIVKAPGMLQKHYSPNVHIRLNAINLNDKEI 240 Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGA----SSIAFSSIPN 304 + FGN + +LNLS G EAA NL++Y++I DD A + IA + +P Sbjct: 241 GLNFGNSNLT----GKFALNLSTEGNFIEAAANLYSYLRILDDYAALNDINCIAVAPVPL 296 Query: 305 HGLGIAINNRLERAA 319 +G AIN+RL+RAA Sbjct: 297 TNIGAAINDRLKRAA 311 >gi|332185534|ref|ZP_08387282.1| SUA5 domain protein [Sphingomonas sp. S17] gi|332014512|gb|EGI56569.1| SUA5 domain protein [Sphingomonas sp. S17] Length = 311 Score = 188 bits (478), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 124/296 (41%), Positives = 163/296 (55%), Gaps = 17/296 (5%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 +A+PTETVYGLA D+ P A+ R+Y K RP+ NPLI HV D++ ++ A D +L LA Sbjct: 30 VAVPTETVYGLAADATEPQAVARIYAAKGRPSFNPLIVHVPDLAAARELAEFDADALALA 89 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRS 143 + FWPGPLTLV L + I L TA L T RVP + L+ G PLA PSAN S Sbjct: 90 EAFWPGPLTLVRPLRAGAGIASLVTAGLDTVAIRVPRHRAMQALLAASGRPLAAPSANAS 149 Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203 G IS T H+ +S+ +P I+D G ++ GLESTIV + ILRPG + L Sbjct: 150 GGISPTRAAHV-RASLGPAVP-ILDDGATEAGLESTIVAGRT-----ILRPGPVTGTMLA 202 Query: 204 RAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENA 263 + + +E + + +PG L SHYAPR +RL E LI FG V ++ Sbjct: 203 KVLG-SVEQGPEAPAIVTAPGQLASHYAPRKPLRLNVTEAAADEWLIGFGAVEGQD---- 257 Query: 264 IISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 LS G EAA LF+ + AD S +A + IP G+G AIN+RL RAA Sbjct: 258 ----TLSAIGDPVEAAARLFDALHRADASDPPRLAVAPIPVDGIGEAINDRLRRAA 309 >gi|254445927|ref|ZP_05059403.1| Sua5/YciO/YrdC/YwlC family protein, putative [Verrucomicrobiae bacterium DG1235] gi|198260235|gb|EDY84543.1| Sua5/YciO/YrdC/YwlC family protein, putative [Verrucomicrobiae bacterium DG1235] Length = 327 Score = 186 bits (473), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 125/334 (37%), Positives = 181/334 (54%), Gaps = 29/334 (8%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 I+ T+ N LR+ +FL G + +PTETVYGLA ++ +P A +++E+K+RPA +PLIC Sbjct: 4 ILQPTEEN-LRELRKFLLFGGLVGVPTETVYGLAANAFDPEACAKIFEVKQRPANDPLIC 62 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC- 121 HVS ++ +PL+L LAK FWPGPLT VL + I + TA L + R Sbjct: 63 HVSGADALEDICHANPLALRLAKRFWPGPLTFVLP--KKSKIPNIVTAGLDSVAVRCSAH 120 Query: 122 -GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 F +L+E P+A PSAN IS T +H+ + + +I I+DGG G+ESTI Sbjct: 121 PDF-HRLVEQCDFPIAAPSANPFAYISPTTAQHV-QAGLGSKITFILDGGSCSFGVESTI 178 Query: 181 VNVQCEKKVRILRPGGLEIET----LKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQV 236 ++++ E RILR G L E L R+I DE+ +PG L HY+PR+ + Sbjct: 179 LDLRDETNPRILRYGALPAEDIEVELGRSIEKPTFITADESVQHLAPGALPKHYSPRTPL 238 Query: 237 RLRAIHVNPREALIRFGNVPIKNIENAIISLN-----------LSKTGKLKEAAFNLFNY 285 LR N A +KN + A++ LS+ GKL E A NL+ Sbjct: 239 ELRGGISNAELA-------SLKNDQAALLLARPEGSFPGNVHWLSENGKLSEIASNLYAK 291 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 ++ D+SG ++I P GLG+AIN+RL RA+ Sbjct: 292 LREIDESGYATIFAEEAPELGLGLAINDRLRRAS 325 >gi|313677607|ref|YP_004055603.1| translation factor sua5 [Marivirga tractuosa DSM 4126] gi|312944305|gb|ADR23495.1| translation factor SUA5 [Marivirga tractuosa DSM 4126] Length = 317 Score = 186 bits (472), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 118/316 (37%), Positives = 181/316 (57%), Gaps = 17/316 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E LDA I +PTETVYGLA + + +++E+K RP +PLI H ++ + Sbjct: 8 INQAKELLDADQLIGLPTETVYGLAGNGLKANVVSKIFEVKNRPHFDPLILHSYSLNAIS 67 Query: 72 KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-KLIE 129 ++ P + LAK FWPGPLT++L+ I L+ + L FR+P L++ Sbjct: 68 EYVKEIPETAKILAKAFWPGPLTILLE--RNEKIPDLTCSGLNRVAFRIPKHPNALSLLK 125 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 +PLA PSAN G IS TN +H+ + +IP I++G IS++G+ESTIV + + V Sbjct: 126 ILDYPLAAPSANPFGYISPTNSQHV-QQQLGDKIPFILEGKISEVGIESTIVGFENGETV 184 Query: 190 RILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI------HV 243 I R GGL+++ ++ I ++ +S P +PGMLKSHYAP + L I + Sbjct: 185 -IYRLGGLDVDQIESLIG-KVRILPHSSSKPDAPGMLKSHYAPSKNIILGNIEELIEQNS 242 Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303 N + ++ F K++E SL LSK+ + EAA NLF++++ D+S I +P Sbjct: 243 NLKLGVLSFSKY-YKDVET---SLMLSKSKDMHEAAKNLFSHLRKLDESNVDLIITEKVP 298 Query: 304 NHGLGIAINNRLERAA 319 + GLG AIN+RL+RAA Sbjct: 299 SEGLGKAINDRLQRAA 314 >gi|254709554|ref|ZP_05171365.1| Sua5/YciO/YrdC/YwlC protein family [Brucella pinnipedialis B2/94] gi|261317082|ref|ZP_05956279.1| Sua5/YciO/YrdC/YwlC family protein [Brucella pinnipedialis B2/94] gi|261296305|gb|EEX99801.1| Sua5/YciO/YrdC/YwlC family protein [Brucella pinnipedialis B2/94] Length = 242 Score = 186 bits (472), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 101/235 (42%), Positives = 141/235 (60%), Gaps = 7/235 (2%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D A+ +A E L G +AIPTETVYGLA D+ N + ++ K RP NPLI HV I Sbjct: 8 DDGAVLRAVEVLRRGGLVAIPTETVYGLAADAANGEGVAGIFAAKGRPQFNPLIAHVDGI 67 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD----IHPLSTANLKTACFRVPCGF 123 +M ++ + DP+S LA+ FWPGPLT+VL L D IHPL TA L T R+P G Sbjct: 68 AMAGRYVAFDPVSRRLAEAFWPGPLTIVLPLKERQDTERPIHPLVTAGLSTLAVRMPHGR 127 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + +I P+A PSAN SG+IS T+ + + + I LI+D G +G+ESTIV V Sbjct: 128 VRDVITALDSPVAAPSANTSGRISPTSAAAV-AGDLGGRIDLILDAGPCGVGVESTIVKV 186 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238 + +V +LRPGGL E ++ + +L + + Q+PGM++SHYAP + +RL Sbjct: 187 DGD-QVHLLRPGGLAAEEIEAFLGQKLRRA-EHAAAIQAPGMMESHYAPDASMRL 239 >gi|312129757|ref|YP_003997097.1| translation factor sua5 [Leadbetterella byssophila DSM 17132] gi|311906303|gb|ADQ16744.1| translation factor SUA5 [Leadbetterella byssophila DSM 17132] Length = 314 Score = 186 bits (471), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 118/314 (37%), Positives = 172/314 (54%), Gaps = 14/314 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 ++KA L+AG +AIPTETVYGLA ++ NP A+ +++E K RP+ +PLI H+S + + Sbjct: 8 IQKAKAILEAGGLVAIPTETVYGLAANALNPKAVAKIFEAKNRPSFDPLIIHISTFAELY 67 Query: 72 KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPC-GFTKKLI 128 K+ S L +A FWPGPLT+ LL DI P + T+ L+ RVP T L+ Sbjct: 68 KYTSQSLGQLTEIANKFWPGPLTV---LLPKRDIIPDVVTSGLERVAVRVPQHELTLSLL 124 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 + PLA PSAN G +S T +H+ + ++ I+DGG ++G+ESTI+ ++ Sbjct: 125 SSIDFPLAAPSANPFGYVSPTTAQHVY-DQLAGKVDYILDGGPCQVGVESTIIGIEVADL 183 Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL--RAIHVNPR 246 V + R GGL IE L+R ++ S P +PGMLK HY+P QV + + Sbjct: 184 V-VYRKGGLAIEDLERNFEGKVRVNDFSASNPSAPGMLKKHYSPDKQVLVYKEGESYDKE 242 Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306 A +RF + PI + LS++ L EAA LF ++ D +I +P G Sbjct: 243 TAFLRFSS-PISGYSYQFV---LSESADLAEAAARLFQGLRALDQMPVKTIVIEFVPEVG 298 Query: 307 LGIAINNRLERAAA 320 LG AIN+RL R A Sbjct: 299 LGRAINDRLRRTIA 312 >gi|307718163|ref|YP_003873695.1| hypothetical protein STHERM_c04500 [Spirochaeta thermophila DSM 6192] gi|306531888|gb|ADN01422.1| hypothetical protein STHERM_c04500 [Spirochaeta thermophila DSM 6192] Length = 330 Score = 185 bits (470), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 118/328 (35%), Positives = 182/328 (55%), Gaps = 17/328 (5%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +++ TD A+ +A L G +A PTETVYGL ++ + A+ R++EIK+RP +PLI Sbjct: 5 RVLPATD-EAIEEAARLLREGEAVAFPTETVYGLGANALDAVAVARIFEIKERPLFDPLI 63 Query: 62 CHVSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 H+++ M+K+ P ++ L FWPGPLTLVL + + TA L T R+P Sbjct: 64 VHIAEEGMLKEVVREVPSIARRLMARFWPGPLTLVLP--KGERVPGIVTAGLPTVGVRMP 121 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 ++LIE G P+A PSANR G +S T H+ + + + L++DGG ++G+EST Sbjct: 122 AHPVARRLIERAGVPIAAPSANRFGSLSPTRAGHV-AGQLGGRVALVLDGGACEVGVEST 180 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV--DETSTPQSPGMLKSHYAPRSQVR 237 +V V+ +VR+LRPGG+ +E L+ A+ + ++PGML HYAP V Sbjct: 181 VVRVEG-GRVRVLRPGGVAVEALEEAVGRGAVVVGGPEREGAQEAPGMLPWHYAPSVPVV 239 Query: 238 LRAIHVNP-----REA-LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291 + P REA L+ + VP + A+ LS G L+EAA LF + ++ Sbjct: 240 VLEGGAMPGAEEAREAGLLAWREVPARPAFRAVEV--LSPRGDLQEAAARLFEGLHRLEE 297 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAA 319 +G + I ++P GLG A+ +RL +AA Sbjct: 298 AGVARIYAEAVPEVGLGRAVMDRLRKAA 325 >gi|145592582|ref|YP_001156879.1| Sua5/YciO/YrdC/YwlC family protein [Salinispora tropica CNB-440] gi|145301919|gb|ABP52501.1| translation factor SUA5 [Salinispora tropica CNB-440] Length = 323 Score = 185 bits (470), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 118/315 (37%), Positives = 184/315 (58%), Gaps = 17/315 (5%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 +A L AG +A+PTETVYGL ++ + A+ R++ K RP+ +PLI H+++ + ++K Sbjct: 15 EAAAVLRAGGLVALPTETVYGLGANALDAPAVARIFAAKARPSFDPLISHLAEAAELEKL 74 Query: 74 ASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETY 131 P ++ LA+ FWPGPLTL++D + I P+ T+ L+T RVP T+ LI Sbjct: 75 VGTVPAAVAELAERFWPGPLTLIVDRPAV--IPPIVTSGLETMAVRVPDHAATRGLIAAA 132 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 G P+A PSANR GQ+S T +H++ + + + +++DGG ++ G+ESTIV+ + ++ V + Sbjct: 133 GVPVAAPSANRFGQLSPTRAEHVV-AGLGAAVDVVLDGGPTRCGIESTIVDARGDRPV-V 190 Query: 192 LRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP------ 245 LR G L +E L+ A+ L + P +PG L +HYAPR+++RL A +P Sbjct: 191 LRLGALPVELLQEAVGPVLVRA-GSSGQPVAPGTLAAHYAPRTRLRL-ATDTDPADGGVS 248 Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305 R+ + F P + + LS G L EAA LF+ + D +G I S+P Sbjct: 249 RQGFLGFRGCPAGDWAAVEV---LSSKGDLTEAAARLFDALHRLDGAGVDEILVESVPEV 305 Query: 306 GLGIAINNRLERAAA 320 G+G AIN+RL RAAA Sbjct: 306 GVGRAINDRLRRAAA 320 >gi|296122108|ref|YP_003629886.1| Sua5/YciO/YrdC/YwlC family protein [Planctomyces limnophilus DSM 3776] gi|296014448|gb|ADG67687.1| Sua5/YciO/YrdC/YwlC family protein [Planctomyces limnophilus DSM 3776] Length = 322 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 125/327 (38%), Positives = 179/327 (54%), Gaps = 17/327 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 MQ + ++D+ +A L AG +A+PTETVYGLA NP + +++ K RP +PL Sbjct: 1 MQTVVLSDAE---EAIRALKAGELVALPTETVYGLAGLGLNPEVLAKIFSAKDRPTFDPL 57 Query: 61 ICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I H++ V + AS P + L FWPGPLTLVL + L+TA L T R Sbjct: 58 ILHIARPGQVSQLASEVPHDARRLVDTFWPGPLTLVLP--KKPHVPDLATAGLGTVAVRC 115 Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P +K+IE G PLA PSAN G++S T+ +H++ + IP ++DGG ++G+ES Sbjct: 116 PKHPLMRKIIEKVGVPLAAPSANLFGRLSPTSAQHVV-EQLEGRIPYVLDGGACEVGVES 174 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISV--ELEYCVDETSTPQ-SPGMLKSHYAPRSQ 235 TI+ + V +LRPGGL +E ++ I L ET+ Q +PGML HYAP + Sbjct: 175 TIIGFMPD-GVYLLRPGGLPVEQVEHMIGPLKRLPAQSVETAASQAAPGMLMKHYAPATP 233 Query: 236 VRL--RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293 + + R + P + ++ F P ++ + LS L+EAA LF + D SG Sbjct: 234 LVMIDRFEELKPGDGVLTFCGRPQGHLGPV---MELSPRKNLQEAASLLFQALHQLDRSG 290 Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAA 320 IA P HGLG+AIN+RL RAAA Sbjct: 291 VPRIAALRFPEHGLGMAINDRLSRAAA 317 >gi|315500026|ref|YP_004088829.1| sua5/ycio/yrdc/ywlc family protein [Asticcacaulis excentricus CB 48] gi|315418038|gb|ADU14678.1| Sua5/YciO/YrdC/YwlC family protein [Asticcacaulis excentricus CB 48] Length = 309 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 116/297 (39%), Positives = 165/297 (55%), Gaps = 8/297 (2%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 I +PTETVYGL + +PTA+ +++E K RP NPLI HV+ + + D + LA Sbjct: 17 IHLPTETVYGLGARADDPTAVAKVFEAKGRPRFNPLIVHVASLEAAEAIGVFDDRARDLA 76 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRS 143 + FWPGPLTLV+ + T + L+ A L + RVP + ++E + + PSANRS Sbjct: 77 QAFWPGPLTLVVPVRDTQKVCDLARAGLDSVAIRVPSHPLARAILEGFAGGVVAPSANRS 136 Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203 G+ S T LS + + +DGG ++GLES++V++ E VR LRPG + T Sbjct: 137 GRPSPTRFADALSET-GGFVGASVDGGDCQVGLESSVVSLLGE--VRYLRPGAV---TRA 190 Query: 204 RAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENA 263 +V D T +SPG L HYAP + V + + + FG V K ++ A Sbjct: 191 EVEAVVGPLADDATEGHRSPGRLSLHYAPDAPVNINVENPPADCVYLAFGPVD-KAVDFA 249 Query: 264 IISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 I LNLS G+L EAA NLF Y++ AD + I + IP+ GLG AIN+RL+RAA Sbjct: 250 GIILNLSPMGRLSEAAANLFAYLREADAHKPARICVAPIPSDGLGEAINDRLKRAAG 306 >gi|296284822|ref|ZP_06862820.1| putative translation factor [Citromicrobium bathyomarinum JL354] Length = 323 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 114/321 (35%), Positives = 168/321 (52%), Gaps = 14/321 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 DS + + + L G +A+PTETVYGLA + + A+ R++ K RP+ NPLI HVSD+ Sbjct: 13 DSTGIARTAQILRDGGLVAVPTETVYGLAARADSEDAVSRIFAAKGRPSFNPLIVHVSDV 72 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + +++P +L LA FWPGPLTLVL + A L T R P + Sbjct: 73 QQAEALVTMEPRALALAARFWPGPLTLVLPRHENAAVASSIHAGLPTLAVRCPAHPVMRA 132 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 +++ P+A PSAN S +S T +H+L +++ I ++D G S+ GLESTIV ++ + Sbjct: 133 VLDELAIPVAAPSANASETVSPTTAEHVL-ATLDGRIDSVLDAGASERGLESTIVALRAD 191 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246 +LR G + E L+ + E + ++PG ++ HYAP +RL A Sbjct: 192 GGWSLLREGPIGREVLEDMLGSE----ASDGRGIEAPGQMRRHYAPGKPLRLNARKAEAG 247 Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306 E LI FG V + LS TG + EAA L+ + + S IA + +P Sbjct: 248 EFLIGFGAVEGD--------VTLSATGDVNEAATRLYGCLHLGAASDKPLIAVAPVPEDA 299 Query: 307 LGIAINNRLERAAAPRNQSQR 327 +G AIN+RL RAAAP QR Sbjct: 300 VGRAINDRLRRAAAPPEGDQR 320 >gi|310644396|ref|YP_003949155.1| translation factor (sua5) [Paenibacillus polymyxa SC2] gi|309249347|gb|ADO58914.1| Putative translation factor (SUA5) [Paenibacillus polymyxa SC2] Length = 427 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 128/345 (37%), Positives = 178/345 (51%), Gaps = 32/345 (9%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 IT +R+A L AG +A PTETVYGL D+R+ A+ ++ K RP+ NPLI H+S Sbjct: 83 ITAEKGIREAAVLLQAGETVAFPTETVYGLGADARSTKAVEAVFAAKGRPSDNPLIVHIS 142 Query: 66 DISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 D + +K A ++ + L FWPGPLTLVL ++S + TA L T R+P Sbjct: 143 DAAQLKGMVAEINDTARALMNTFWPGPLTLVLPVVSQA-LSSRVTAGLDTVGVRMPDHPI 201 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 +LI G PLA PSANRSG+ S T +H+L + I I+DGG + +GLEST+V V Sbjct: 202 ALRLIAEAGCPLAAPSANRSGRPSPTLAQHVL-EDLKGRIGGILDGGPTGVGLESTVVQV 260 Query: 184 QCEKKVRILRPGGLEIETLKR-AISVELEYCVDETS-------TPQSPGMLKSHYAPRSQ 235 E V ILRPGG+ E L A SV L+ + T P+SPGM +HYAPR + Sbjct: 261 GDEGTVTILRPGGVTAEQLATVARSVVLDPALAHTPGQDADSLAPRSPGMKYTHYAPRGR 320 Query: 236 VRL------------------RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKE 277 + + A R A++ F + + +L K L E Sbjct: 321 LSVVQGPSSVEVTGWIRAALAEATARGERTAVLAFDDHAAGYAGERVYTLG--KLDALHE 378 Query: 278 AAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 AA L++ ++ D+ G + I + P GLG A+ NRL +AA R Sbjct: 379 AAQRLYSVLRRCDEDGVTYILAEACPPKGLGDAVMNRLLKAAGHR 423 >gi|16127620|ref|NP_422184.1| Sua5/YciO/YrdC family protein [Caulobacter crescentus CB15] gi|221236437|ref|YP_002518874.1| Sua5/YciO/YrdC/YwlC family protein [Caulobacter crescentus NA1000] gi|13425098|gb|AAK25352.1| Sua5/YciO/YrdC family protein [Caulobacter crescentus CB15] gi|220965610|gb|ACL96966.1| Sua5/YciO/YrdC/YwlC family protein [Caulobacter crescentus NA1000] Length = 325 Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 121/303 (39%), Positives = 171/303 (56%), Gaps = 11/303 (3%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L AG + +PTETVYGL ++ +P A+ ++E K RP NPLI HV+D+ + A D Sbjct: 30 LRAGGLVILPTETVYGLGANAADPAAVAAIFEAKGRPRFNPLIAHVADLETAARIAVFDD 89 Query: 79 LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAI 137 + LA+ FWPGPLT+V + + L+ A L T RVP ++ ++ +G + Sbjct: 90 RAHALAREFWPGPLTIVAPIRDPEAVCDLARAGLDTVAIRVPGHPLSRAVLAAFGGAVVA 149 Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197 PSANRSG+ S T ++ + K +DGG +GLEST+V+V E +VR+LRPG + Sbjct: 150 PSANRSGRPSPTTYDDAMAETGDKAA-AHLDGGPCAVGLESTVVSV-LEGEVRLLRPGAV 207 Query: 198 EIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPI 257 L++ + L D+ +SPG L HYAP + VR+ A EA + FG P Sbjct: 208 TRVQLQQIVG-RLAEAQDDAK--RSPGRLALHYAPDAPVRINAKTPEAGEAYLAFGPWP- 263 Query: 258 KNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLER 317 E+ + NLS TG L EAA NLF +++ AD S+IA + IP GLG AIN+RL R Sbjct: 264 ---ESPRV-FNLSPTGDLAEAAANLFAFLRAADRIRPSAIAVAPIPEEGLGEAINDRLRR 319 Query: 318 AAA 320 AA Sbjct: 320 AAG 322 >gi|138896951|ref|YP_001127404.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus thermodenitrificans NG80-2] gi|134268464|gb|ABO68659.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus thermodenitrificans NG80-2] Length = 345 Score = 182 bits (462), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 120/325 (36%), Positives = 177/325 (54%), Gaps = 18/325 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E+L G IA PTETVYGL D+ N TA+ +++ K RP+ NPLI HV+ ++ V+ Sbjct: 21 IQEAAEWLRTGEVIAFPTETVYGLGADAANTTAVEKIFAAKGRPSDNPLIVHVASLAQVE 80 Query: 72 K-HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 AS+ P++ L + FWPGPLTLVL + TA L T R+P LIE Sbjct: 81 SIAASIPPVAKTLMERFWPGPLTLVLPKRDGA-VSERVTAGLSTVAVRMPDHPLALALIE 139 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G LA PSANRSG+ S T H+L + + I +IDGG + +G+EST+++ C +V Sbjct: 140 ASGLALAAPSANRSGRPSPTTAAHVL-ADLNGRIAGVIDGGPTGVGVESTVLD--CSGEV 196 Query: 190 -RILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248 ILRPGG+ E L I E DE + P++PGM +HYAP++ + + A + + Sbjct: 197 PTILRPGGVTKEALSEVIGRVEEAAGDEQTAPKAPGMKYTHYAPKAPLWIAAGPPSFLQR 256 Query: 249 LIRFGNVPIKNI------EN-----AIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297 L+ K + EN A + L L+ A L++ ++ D++G + I Sbjct: 257 LVDESRAEGKTVGVLTTEENKNRYVADVVLACGARRDLETVAQRLYDVLRQFDETGVNLI 316 Query: 298 AFSSIPNHGLGIAINNRLERAAAPR 322 + P G+G AI NRL +AA R Sbjct: 317 YSEAFPEEGIGAAIMNRLRKAAGGR 341 >gi|159045624|ref|YP_001534418.1| Sua5/YciO/YrdC/YwlC family protein [Dinoroseobacter shibae DFL 12] gi|157913384|gb|ABV94817.1| Sua5/YciO/YrdC/YwlC family protein [Dinoroseobacter shibae DFL 12] Length = 325 Score = 182 bits (461), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 111/291 (38%), Positives = 161/291 (55%), Gaps = 11/291 (3%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 +A PTETVYGL D+R+ A+ ++ K RP+ NPLI HV D++ + + P L LA Sbjct: 30 VAFPTETVYGLGGDARSDRAVAGIFAAKGRPSFNPLIVHVPDLAAAGRLVDLPPAGLALA 89 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANRS 143 + FWPG LTLV + + I PL TA L+T RVP + L+ + P+A PSAN S Sbjct: 90 EAFWPGALTLVAPMRAEAGISPLVTAGLETLAVRVPAHSAAQALLRGFDGPVAAPSANPS 149 Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203 G +S T H+L + +I ++DGG +GLESTIV++ E + +LRPGG+ E L Sbjct: 150 GGVSPTTAAHVL-DGLDGKIAAVLDGGACPVGLESTIVSLAGETPM-LLRPGGVTAEALA 207 Query: 204 RAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENA 263 + + + + P +PG L SHYAP + VRL A E + FG + Sbjct: 208 QVLGAPIAEGAGSATQPTAPGQLASHYAPDAPVRLNATARQDGEVWLGFG-------PDC 260 Query: 264 IISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSIAFSSIPNHGLGIAINN 313 ++LS++G+L EAA LF ++ D + IA + +P GLG AIN+ Sbjct: 261 PGDMSLSESGELAEAAARLFAALRAMDALAEGRRIAVAPVPQTGLGAAIND 311 >gi|325109331|ref|YP_004270399.1| translation factor SUA5 [Planctomyces brasiliensis DSM 5305] gi|324969599|gb|ADY60377.1| translation factor SUA5 [Planctomyces brasiliensis DSM 5305] Length = 326 Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 113/321 (35%), Positives = 177/321 (55%), Gaps = 20/321 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A L AG +AIPTETVYGLA D+ NP A+ ++ K+RP +PLI H+ + + + Sbjct: 12 IEQASRILHAGGLVAIPTETVYGLAADALNPEAVAGIFAAKQRPEFDPLIVHIYERAQLS 71 Query: 72 KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIE 129 + + PL+ L FWPGPLT +L+ + + L T+ L T R+P T ++L+ Sbjct: 72 QLCREISPLAAELMNAFWPGPLTFILE--KSASVPDLVTSGLSTVGVRMPEHETARELLR 129 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 PLA PSAN G+ S T H++ + I ++DGG ++G+ESTIV E + Sbjct: 130 VSRLPLAAPSANLFGRTSPTTAAHVM-KQLDGRIDYLLDGGECRVGVESTIVRCH-EGVI 187 Query: 190 RILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL----RAIHVNP 245 ++LRPGG +E L++ V +E +++ +P +PG L HYAPR+++++ + + V Sbjct: 188 QLLRPGGTPVEALEKFAPV-VETRLEDNESPAAPGQLLEHYAPRTKLQIIDPQQPLDVPA 246 Query: 246 REALIRF------GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF 299 AL+ + P E + LS++G L AA F + DD G + I Sbjct: 247 GSALLTLQKAGFPDDFPFDQFE---VVETLSESGDLTVAAARFFAALHALDDRGLNRIFA 303 Query: 300 SSIPNHGLGIAINNRLERAAA 320 + PN LG+A+N+RL RAAA Sbjct: 304 TPFPNRELGLALNDRLRRAAA 324 >gi|196249769|ref|ZP_03148465.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus sp. G11MC16] gi|196210645|gb|EDY05408.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus sp. G11MC16] Length = 345 Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 120/325 (36%), Positives = 177/325 (54%), Gaps = 18/325 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E+L G IA PTETVYGL D+ N TA+ +++ K RP+ NPLI HV+ + V+ Sbjct: 21 IQEAAEWLRTGEVIAFPTETVYGLGADAANTTAVEKIFAAKGRPSDNPLIVHVASRAQVE 80 Query: 72 K-HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 AS+ P++ L + FWPGPLTLVL + TA L T R+P LIE Sbjct: 81 SIAASIPPVAKTLMERFWPGPLTLVLPKRDGA-VSERVTAGLSTVAVRMPDHPLALALIE 139 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G LA PSANRSG+ S T H+L + + I +IDGG + +G+EST+++ C +V Sbjct: 140 ASGLALAAPSANRSGRPSPTTAAHVL-ADLNGRIAGVIDGGPTGVGVESTVLD--CSGEV 196 Query: 190 -RILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248 ILRPGG+ E L I E DE + P++PGM +HYAP++ + + A + + Sbjct: 197 PTILRPGGVTKEALSEVIGRVEEAAGDEQTAPKAPGMKYTHYAPKAPLWIAAGPPSFLQR 256 Query: 249 LIRFGNVPIKNI------EN-----AIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297 L+ K + EN A + L +L+ A L++ ++ D++G + I Sbjct: 257 LVDESRAEGKTVGVLTTEENKNRYVADVVLACGARRELETVAQRLYDVLRQFDETGVNLI 316 Query: 298 AFSSIPNHGLGIAINNRLERAAAPR 322 + P G+G AI NRL +AA R Sbjct: 317 YSEAFPEEGIGAAIMNRLRKAAGGR 341 >gi|296111567|ref|YP_003621949.1| SUA5 family translation factor (putative) [Leuconostoc kimchii IMSNU 11154] gi|295833099|gb|ADG40980.1| SUA5 family translation factor (putative) [Leuconostoc kimchii IMSNU 11154] Length = 337 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 121/329 (36%), Positives = 177/329 (53%), Gaps = 20/329 (6%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 TD AL KA L AG +A PTETVYGL D+ N A+++++ K RPA NPLI V+D Sbjct: 8 TDQQALAKASALLKAGEVVAFPTETVYGLGADATNDLAVKKVFTAKGRPADNPLIMTVAD 67 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 +S ++ + ++ + L FWPG LT++L ++ T + L T L+T FR+P T+ Sbjct: 68 VSQLEAYVTISEAAQKLMTQFWPGSLTIILPII-TGQVSMLVTGGLQTVAFRLPANDVTR 126 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +LI G PL PSAN SG+ S T +H+ K I I+D G + +G+EST+V++ Sbjct: 127 ELIRMTGVPLVGPSANLSGKPSPTTAQHVWHDMQGK-ISGIVDDGPTMVGVESTVVDMSA 185 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETS-----TPQSPGMLKSHYAPRSQV---- 236 ILRPG + L+ A+ V + TS TP++PGM HYAP +V Sbjct: 186 AVPT-ILRPGAVTQNQLQEALGVAVIDATSTTSVASDVTPKAPGMKYRHYAPDKKVVMFD 244 Query: 237 RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKE----AAFNLFNYMKIADDS 292 RL A+ + + L + V ++ A + L LS+T L E A LF ++ DD Sbjct: 245 RLDALDL--KLTLQKNDVVMAQDATIAGMQLPLSQTWSLGETLENATEQLFAGLRFYDDD 302 Query: 293 GASSIAF-SSIPNHGLGIAINNRLERAAA 320 +I + +P G+G A NNRL +AA Sbjct: 303 DEVAIIYVEKMPPVGIGKAFNNRLAKAAG 331 >gi|110638807|ref|YP_679016.1| translation factor SUA5 [Cytophaga hutchinsonii ATCC 33406] gi|110281488|gb|ABG59674.1| translation factor SUA5 [Cytophaga hutchinsonii ATCC 33406] Length = 321 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 122/318 (38%), Positives = 175/318 (55%), Gaps = 19/318 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A L+ +AIPTETVYGLA ++ + A+ ++ +KKRP+ +PLI H I + Sbjct: 11 ITQAKRLLEENHVVAIPTETVYGLAGNALDIKAVATIFSVKKRPSFDPLIVHTHSIEALG 70 Query: 72 KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCG-FTKKLI 128 + + P LAK FWPGPLTL LL +I P L T+ L R+P T L+ Sbjct: 71 EFVADIPEQAQLLAKAFWPGPLTL---LLEKKEIIPDLVTSGLNRVAVRIPNHPLTLALL 127 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 ++ PLA PSAN G IS T +H+ + + ++ I+DGG S IG+ESTI+ + K Sbjct: 128 QSLSFPLAAPSANPFGYISPTTAQHV-TDQLGDQVAYILDGGASNIGVESTIIGWE-NGK 185 Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVR------LRAIH 242 ++R GGL IE ++ AI + +S P +PGMLKSHYAPR +R L + Sbjct: 186 ATVMRVGGLSIEAIE-AIIGPVHVQAVSSSNPAAPGMLKSHYAPRIPMRAGNIETLLQTY 244 Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302 + A++ F +N I LS G + EAA +LF M++ D S A I + Sbjct: 245 AGKKIAVLSFQQAYPAAYKNYI----LSPEGNVTEAAQHLFAAMRVLDTSEADIILTEYV 300 Query: 303 PNHGLGIAINNRLERAAA 320 P GLG+AIN+RL+RA A Sbjct: 301 PAVGLGLAINDRLKRACA 318 >gi|189218176|ref|YP_001938818.1| translation factor SUA5 [Methylacidiphilum infernorum V4] gi|189185034|gb|ACD82219.1| Putative translation factor SUA5 [Methylacidiphilum infernorum V4] Length = 324 Score = 179 bits (455), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 121/326 (37%), Positives = 171/326 (52%), Gaps = 30/326 (9%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 A+ KA + L+ G +AIPTETVYGLA D NP A+ R++E+KKRP ++P+I H S + Sbjct: 12 KAIEKAVDLLNKGEVVAIPTETVYGLAADGLNPEAVARIFELKKRPKIDPVIVHCSSLKE 71 Query: 70 VKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 V + P L + FWPGPLTLVL I + TA L A FRVP T +L Sbjct: 72 VGFYVCDLPDEARILGESFWPGPLTLVLK--KKESIPDIVTAGLPFAGFRVPKHPLTLEL 129 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I+ +G PLA PSAN+ G+IS T + + + IP I+DGG ++G+EST+V+ + Sbjct: 130 IQKFGRPLAAPSANKFGKISPTTAQAVY-EEFDQIIPFILDGGPCQVGIESTVVSF-AQI 187 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 +LR G + E ++R I + T +PG HYAP + P E Sbjct: 188 PPLLLRFGAISKEEIERKIG-PVTIPPPSTGWNLAPGRFPRHYAPST----------PLE 236 Query: 248 ALIRFGNVPIKNIENAIISL-------------NLSKTGKLKEAAFNLFNYMKIADDSGA 294 + ++P+ +N+ + NLS L EAA NLF ++ D SG Sbjct: 237 TVFTLTDLPLYKRKNSALLFWGEEDTQGFKTFRNLSPRKSLTEAAANLFQMLRDLDKSGV 296 Query: 295 SSIAFSSIPNHGLGIAINNRLERAAA 320 I +P GLGIAIN+RL++AA Sbjct: 297 EKIYALLLPEKGLGIAINDRLKKAAG 322 >gi|257416746|ref|ZP_05593740.1| Sua5/YciO/YrdC/YwlC [Enterococcus faecalis AR01/DG] gi|257158574|gb|EEU88534.1| Sua5/YciO/YrdC/YwlC [Enterococcus faecalis ARO1/DG] Length = 340 Score = 179 bits (453), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 112/314 (35%), Positives = 177/314 (56%), Gaps = 23/314 (7%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP-LSLHL 83 +A PTETVYGL D+ N TA++++Y++K RP+ NPLI HV+++ MVKK+ + P ++ L Sbjct: 24 VAFPTETVYGLGADALNETAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVATKL 83 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142 FWPGPLTL+ ++ S T T L+T FR+P T LIE PL PSAN Sbjct: 84 VSAFWPGPLTLIFNVPSDT-FSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPSANT 142 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV-RILRPGGLEIET 201 SG+ S T+ +H+ + EI I+D G ++IG+EST++++ E V ILRPG + E Sbjct: 143 SGKPSPTSAEHVY-HDLQGEIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAITKEQ 201 Query: 202 LKRAI-SVELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKN 259 L+ I V+++ + + E + P++PGM HY+P ++V + + +A I+ + Sbjct: 202 LESIIPQVKIDTHLISENAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQATEQQEK 261 Query: 260 I--------------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305 I ENA + ++T ++ A LF ++ D+ GA++I Sbjct: 262 IGLFLSDEQAAQLDTENAFVYSYGAET--VENATKELFAGLRALDEQGATTIFAQGFAET 319 Query: 306 GLGIAINNRLERAA 319 GLG A NRL+++A Sbjct: 320 GLGTAYMNRLKKSA 333 >gi|14590350|ref|NP_142416.1| hypothetical protein PH0435 [Pyrococcus horikoshii OT3] gi|3256838|dbj|BAA29521.1| 340aa long hypothetical protein [Pyrococcus horikoshii OT3] Length = 340 Score = 178 bits (452), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 121/338 (35%), Positives = 178/338 (52%), Gaps = 26/338 (7%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 + + S D LR A + + G +A PTETVYGL D+ N A+RR++E K RPA NPL Sbjct: 5 INMRSGVDEVKLRIAAKLIREGKLVAFPTETVYGLGADALNERAVRRIFEAKGRPADNPL 64 Query: 61 ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFR 118 I H++ S V + A P L + FWPGPLT+V L D+ P ++T L T R Sbjct: 65 ILHIAKFSQVYELAREVPEEAKVLVERFWPGPLTIV---LPRKDVVPDVTTGGLDTVAIR 121 Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 +P KLIE G P+A PSAN SG+ S T+ +H+ + +I IIDGG ++IG+E Sbjct: 122 MPANEIALKLIELSGKPIAAPSANISGKPSPTSAEHV-ADDFYGKIECIIDGGETRIGVE 180 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCV--DETSTPQSPGMLKSHYAPRS 234 ST++++ V +LRPGGL +E +++ I V + V + TP+SPGM HYAP + Sbjct: 181 STVIDLTEHPPV-LLRPGGLPLEEIEKVIGKVRIHPAVFGKKVDTPKSPGMKYKHYAPNA 239 Query: 235 QVRLRAIHVNPREALI------------RFGNVPIKNIENAIISLNLSKTGKLKEAAFNL 282 +V + PRE + R V + E+ ++E A NL Sbjct: 240 EV---IVVEGPREKVKGKITELVKELKERGKKVGVIGSESYNADEFFFLGSSVEEVAKNL 296 Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 F ++ D +G + + GLG+A+ NRL +A+ Sbjct: 297 FKALRYMDKAGVDVVIAEGVEERGLGLAVMNRLRKASG 334 >gi|254381244|ref|ZP_04996609.1| Sua5/YciO/YrdC/YwlC protein [Streptomyces sp. Mg1] gi|194340154|gb|EDX21120.1| Sua5/YciO/YrdC/YwlC protein [Streptomyces sp. Mg1] Length = 335 Score = 178 bits (452), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 116/339 (34%), Positives = 176/339 (51%), Gaps = 36/339 (10%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 M ++ + +A E L AG +A+PTETVYGL ++ +P A+ R++++K RP +PLI H Sbjct: 10 MVTATTSDIERAAEVLRAGGLVALPTETVYGLGANAEDPAAVARIFQVKGRPPSHPLIVH 69 Query: 64 VSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 ++ + P + LA+ FWPGPLTLVL + +T L+T RVP Sbjct: 70 IAAAEHLDDWVETVPETARLLAEHFWPGPLTLVLRRGPRVPLE--ATGGLETVAVRVPDH 127 Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 L+ +G + PSANR G +S T H+ + + + L++DGG ++G+ESTIV Sbjct: 128 PVALALLSAFGGGVTAPSANRFGSVSPTTADHV-RTELGGAVDLVLDGGSCEVGVESTIV 186 Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241 +V E ILRPGG+ E L+ +S + V TS + PG SHYAPR++V L Sbjct: 187 DVTGEVP-SILRPGGVTREDLEAVLSRSM--AVPSTSHVRVPGQHPSHYAPRARVVL--- 240 Query: 242 HVNPREALIR------------------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLF 283 V P + + F + P+K +A++++ G + A+ L+ Sbjct: 241 -VEPEKVIAEAELAQGLGHRVGVFVPAAFADTPVKT--HAVVTV----PGSMDAYAYGLY 293 Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 +++ D G I S P GLG+AI NRL RAA PR Sbjct: 294 GFLRELDQQGCDLIVASLPPEEGLGLAIANRLRRAAGPR 332 >gi|315186249|gb|EFU20010.1| translation factor SUA5 [Spirochaeta thermophila DSM 6578] Length = 330 Score = 178 bits (451), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 118/328 (35%), Positives = 177/328 (53%), Gaps = 17/328 (5%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +++ TD + +A L G +A PTETVYGL ++ + A+ R++EIK+RP +PLI Sbjct: 5 RVVPATDET-IEEAARLLREGEAVAFPTETVYGLGANALDAVAVARIFEIKERPLFDPLI 63 Query: 62 CHVSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 H+S MV + P L+ L FWPGPLTLVL + + TA L T R+P Sbjct: 64 VHISGEEMVGEVVREVPDLARTLMARFWPGPLTLVLP--KGERVPGIVTAGLPTVGVRMP 121 Query: 121 C-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 ++LIE P+A PSANR G +S T H+ + + + L++DGG ++G+EST Sbjct: 122 AHPVARRLIEKAEVPIAAPSANRFGSLSPTRAGHV-AGQLGGRVALVLDGGACEVGVEST 180 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV--DETSTPQSPGMLKSHYAPRSQVR 237 +V V+ +VR+LRPGG+ +E L+ A+ + ++PGML HYAP V Sbjct: 181 VVRVEG-GQVRVLRPGGVPVEALEEAVGRGAVVVGGPEREGAQEAPGMLPWHYAPSVPVV 239 Query: 238 LRAIHVNP-----REA-LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291 + P REA L+ F P + A+ LS G L+EAA LF + ++ Sbjct: 240 VLEGGAMPGAEEAREAGLLAFRGAPEEPAFRAVEV--LSPRGDLQEAAAGLFEGLHRLEE 297 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAA 319 +G + I ++P GLG A+ +RL +AA Sbjct: 298 AGVARIYAEAVPEVGLGRAVMDRLRKAA 325 >gi|170287882|ref|YP_001738120.1| Sua5/YciO/YrdC/YwlC family protein [Thermotoga sp. RQ2] gi|170175385|gb|ACB08437.1| Sua5/YciO/YrdC/YwlC family protein [Thermotoga sp. RQ2] Length = 335 Score = 177 bits (450), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 122/328 (37%), Positives = 171/328 (52%), Gaps = 26/328 (7%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L++A E L G I PTETVYG+ D+ N A ++++E+K RPA NPLI H+ Sbjct: 13 DEKVLKEAVELLQNGEVIIFPTETVYGIGADAYNEEACKKIFELKGRPADNPLIVHIHSF 72 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 +++ A L K FWPGPLT++L S I P+ TA L T R+P K Sbjct: 73 EQLEEIAEGYEPHLDFLKKFWPGPLTVILRKKSEK-IPPVVTAGLPTVAMRMPAHPVALK 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LIE +GHP+A PSAN SG+ S TNVKH++ + K + LIID G + GLESTIV++ E Sbjct: 132 LIELFGHPIAAPSANISGRPSATNVKHVVEDFMGK-VKLIIDAGDTPFGLESTIVDLTKE 190 Query: 187 KKVRILRPGGLEIETLKR----AISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242 K V +LRPG +E+E LK + + + P +PGM HYAP + L Sbjct: 191 KPV-LLRPGPVEVERLKELFPGLVVPDFVRKGNFEGRPLAPGMKYRHYAPLKPLIL---- 245 Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSK--------TGKLKEA---AFNLFNYMKIADD 291 E L + V K ++ +I + K G LK+ A N+F+ ++ A+ Sbjct: 246 ---VEDLTKMEEVLKKYPDHVVICVEERKELYDDRIVVGSLKKPYSIAQNIFSALREAEK 302 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAA 319 G I G+ A+ NRL +AA Sbjct: 303 MGKEYIIVEGFEERGILFAVMNRLRKAA 330 >gi|240103997|ref|YP_002960306.1| Translation factor, putative, Sua5/YciO/YrdC/YwlC family [Thermococcus gammatolerans EJ3] gi|239911551|gb|ACS34442.1| Translation factor, putative, Sua5/YciO/YrdC/YwlC family [Thermococcus gammatolerans EJ3] Length = 343 Score = 177 bits (450), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 119/326 (36%), Positives = 177/326 (54%), Gaps = 24/326 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L+ A + G +A PTETVYGL D+ N A+RR++E K RPA NPLI H+++ + Sbjct: 15 LKVAARLIVEGKLVAFPTETVYGLGADALNERAVRRIFEAKGRPADNPLIIHIAESEWLF 74 Query: 72 KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + A V ++L LA+ FWPGPLTLVL + ++T L T R+P +LI Sbjct: 75 ELAREVPEVALRLAERFWPGPLTLVLP--KGEKVPSVTTGGLDTVAVRMPAHPIALELIR 132 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G P+A PSAN SG+ S T H++ + I IIDGG + IG+EST++++ E V Sbjct: 133 LSGRPIAAPSANISGKPSPTEADHVVDDFYGR-IECIIDGGPTPIGVESTVLDLTGEVPV 191 Query: 190 RILRPGGLEIETLKRAIS-VELEYCVD--ETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246 +LRPGGL +E ++R I V++ V E + ++PGM HY+P +QV L PR Sbjct: 192 -LLRPGGLPLEDIERVIGRVDVHPAVKGIEVNLAKAPGMKYKHYSPNAQVILVE---GPR 247 Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGK------------LKEAAFNLFNYMKIADDSGA 294 EA+ R ++ + + + + T K ++E A N+F ++ D +G Sbjct: 248 EAVRRKMEEIVEEFRSRGLKVGVMATEKYDADAFFHLGESMEEVARNVFRALRELDKAGV 307 Query: 295 SSIAFSSIPNHGLGIAINNRLERAAA 320 I I GLG+A+ NRL +AA Sbjct: 308 DVILAEGIEERGLGLAVMNRLRKAAG 333 >gi|189502130|ref|YP_001957847.1| hypothetical protein Aasi_0735 [Candidatus Amoebophilus asiaticus 5a2] gi|189497571|gb|ACE06118.1| hypothetical protein Aasi_0735 [Candidatus Amoebophilus asiaticus 5a2] Length = 325 Score = 177 bits (450), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 118/322 (36%), Positives = 180/322 (55%), Gaps = 22/322 (6%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A +FL G ++IPTETVYGLA ++ N A+ +++ IK+RP NPLI H+ DI + + Sbjct: 11 ASKFLKQGEVVSIPTETVYGLAANAYNEAAVSKVFSIKQRPMSNPLIIHIGDIEQINEFV 70 Query: 75 SVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132 P ++ LA+ FWPGPLTL+L +T I + TA R+P T +L++T Sbjct: 71 KEIPSEAVILAQHFWPGPLTLLLPKKAT--IPDMVTAGSNKVAIRIPNHPVTLQLLKTIP 128 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192 PLA PSAN G +S T +H+ + +IP I+ GG +G+ESTIV + + K + Sbjct: 129 FPLAAPSANPFGYVSPTTTEHV-KEQLGDKIPYILMGGTCAVGIESTIVGFE-DGKTIVY 186 Query: 193 RPGGLEIETLKRAISVELEYCVDETSTP----QSPGMLKSHYAPRSQVRLRAIHVNPREA 248 R GGLEI ++++ + + + S P +PG L HY+P ++L N + Sbjct: 187 RLGGLEIASIEKLVGTVILHNNLTASNPIEKLVTPGSLSYHYSPNKLLKLG----NMSDL 242 Query: 249 LIRFGN--VPIKNIENAIISLN------LSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300 L+ +G+ V I + +N L+ TGK++EAA+NLF ++ D I S Sbjct: 243 LVTYGSQKVGILAFDQYYEGVNKGQQILLAPTGKVEEAAYNLFAALRELDQLDIDVILCS 302 Query: 301 SIPNHGLGIAINNRLERAAAPR 322 +P+ GLG+AIN+RL RA+A R Sbjct: 303 LVPHQGLGMAINDRLVRASASR 324 >gi|307270731|ref|ZP_07552022.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX4248] gi|306513041|gb|EFM81682.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX4248] Length = 340 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 112/317 (35%), Positives = 179/317 (56%), Gaps = 23/317 (7%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLS 80 G +A PTETVYGL D+ N A++++Y++K RP+ NPLI HV+++ MVKK+ A++ ++ Sbjct: 21 GELVAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLSEVA 80 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPS 139 L FWPGPLTL+ ++ S T T L+T FR+P T LIE PL PS Sbjct: 81 TKLVSAFWPGPLTLIFNVPSDT-FSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPS 139 Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV-RILRPGGLE 198 AN SG+ S T+ +H+ + +I I+D G ++IG+EST++++ E V ILRPG + Sbjct: 140 ANTSGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAIT 198 Query: 199 IETLKRAI-SVELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVP 256 E L+ I V+++ + + ET+ P++PGM HY+P ++V + + +A I+ Sbjct: 199 KEQLESIIPQVKIDTHLISETAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQAKEQ 258 Query: 257 IKNI--------------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302 + I ENA + ++T ++ A LF ++ D+ GA++I Sbjct: 259 QEKIGLFLSDEQAAQLDTENAFVYSYGAET--VENATKELFAGLRALDEQGATTIFAQGF 316 Query: 303 PNHGLGIAINNRLERAA 319 GLG A NRL+++A Sbjct: 317 AETGLGTAYMNRLKKSA 333 >gi|218516174|ref|ZP_03513014.1| probable translation factor protein [Rhizobium etli 8C-3] Length = 185 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 88/162 (54%), Positives = 108/162 (66%), Gaps = 1/162 (0%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 AL A L G IA+PTETVYGLA D+ NP AI R+YE K RP NPLICH++D++M Sbjct: 24 ALEAASTALADGFAIAMPTETVYGLAADATNPAAITRIYETKGRPRFNPLICHMADLAMA 83 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130 + HA+ DPLS LA+ FWPGPLTLVL L + IH L+TA L + RVP GF LI Sbjct: 84 EHHAAFDPLSRALAEAFWPGPLTLVLPLKPESPIHSLATAGLDSVGVRVPKGFAGALIGA 143 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172 +G PLA PSAN SG IS T+ H+ + + +IPLI+D G S Sbjct: 144 FGRPLAAPSANTSGAISATSAAHV-EADLGAKIPLILDAGPS 184 >gi|332158705|ref|YP_004423984.1| sua5 superfamily-related protein [Pyrococcus sp. NA2] gi|331034168|gb|AEC51980.1| sua5 superfamily-related protein [Pyrococcus sp. NA2] Length = 340 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 120/335 (35%), Positives = 180/335 (53%), Gaps = 30/335 (8%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D LR A + G +A PTETVYGL D+ N +A+RR++E K RPA NPLI H+S Sbjct: 12 DERKLRIAARLIREGKLVAFPTETVYGLGADALNESAVRRIFEAKGRPADNPLIVHISSF 71 Query: 68 SMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCG-FT 124 S V + A P LA+ FWPGPL +V L ++I P ++T L T R+P Sbjct: 72 SQVHELAREVPEEAKMLAREFWPGPLAIV---LPKSEIVPKVTTGGLDTVAIRMPANKIA 128 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 KLIE G P+A PSAN SG+ S T+ +H+ + +I I+DGG +KIG+EST++++ Sbjct: 129 LKLIELSGRPIAAPSANISGKPSPTSAEHV-AEDFYGKIECIVDGGETKIGVESTVIDLT 187 Query: 185 CEKKVRILRPGGLEIETLKRAIS-VELEYCV--DETSTPQSPGMLKSHYAPRSQVRL--- 238 V +LRPGGL +E ++R I V + V + ++PGM HYAP ++V + Sbjct: 188 EWPPV-LLRPGGLPLEEIERVIGEVRVHPAVYGKKVDVAKAPGMKYRHYAPNAEVIVVEG 246 Query: 239 --RAIHVNPREALIRFGNVPIKNIENAIIS---------LNLSKTGKLKEAAFNLFNYMK 287 + RE + F + K ++ +I L ++ ++E A NLF ++ Sbjct: 247 SREKVGAKIRELVEEFKS---KGLKVGVIGSADYGADEFFFLGRS--VEEVARNLFKALR 301 Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 D +G + + GLG+A+ NRL +A+ R Sbjct: 302 YMDRAGVDIVIAEGVEEKGLGLAVMNRLRKASGYR 336 >gi|91762257|ref|ZP_01264222.1| Sua5/YciO/YrdC family protein [Candidatus Pelagibacter ubique HTCC1002] gi|91718059|gb|EAS84709.1| Sua5/YciO/YrdC family protein [Candidatus Pelagibacter ubique HTCC1002] Length = 310 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 114/317 (35%), Positives = 172/317 (54%), Gaps = 15/317 (4%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 ++ + ++KA ++LD I +PTETVYGLA ++ +A++++Y +KKRP NPLI H D Sbjct: 3 SNQSNIKKAKKYLDKNYCIGVPTETVYGLAANAYKNSAVKKIYNLKKRPKNNPLIVHYHD 62 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTK 125 I +KK ++ + L K F PGP+T VL L + I T N K+ R P K Sbjct: 63 IDSLKKDCLINDNFIKLYKKFSPGPITYVLQLKKNSKISKYVTNNKKSLAVRFPKHTIFK 122 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 L++ +PLA PSAN + ++S N K + K+I I+DGG IG+ESTIVN+ Sbjct: 123 NLLKQLDYPLAAPSANITTKVSAVNAKDV-KEEFGKKIKYILDGGTCAIGIESTIVNLTA 181 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQ---SPGMLKSHYAPRSQVRLRAIH 242 K ILR GGL+I +++A+ ++ + ++ P+ +PG + HY+P +R+ Sbjct: 182 --KPTILRLGGLDISKIQKALGFKM----NISTNPKKKIAPGQSRLHYSPGIPLRMNVTK 235 Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302 EA I K L+ L EAA L++ ++ + G SIA I Sbjct: 236 PKNDEAFIIIKKKKTKPKN----YFYLTSKSNLDEAAKKLYSCLRKIKNEGYKSIAVEKI 291 Query: 303 PNHGLGIAINNRLERAA 319 PN GLG AIN+RL RA+ Sbjct: 292 PNIGLGKAINDRLRRAS 308 >gi|327535786|gb|AEA94620.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis OG1RF] Length = 340 Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 111/314 (35%), Positives = 177/314 (56%), Gaps = 23/314 (7%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP-LSLHL 83 +A PTETVYGL D+ N A++++Y++K RP+ NPLI HV+++ MVKK+ + P ++ L Sbjct: 24 VAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVATKL 83 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142 FWPGPLTL+ ++ S T T L+T FR+P T LIE PL PSAN Sbjct: 84 VSAFWPGPLTLIFNVPSDT-FSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPSANT 142 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV-RILRPGGLEIET 201 SG+ S T+ +H+ + +I I+D G ++IG+EST++++ E V ILRPG + E Sbjct: 143 SGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAITKEQ 201 Query: 202 LKRAI-SVELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKN 259 L+ I V+++ + + ET+ P++PGM HY+P ++V + + +A I+ + Sbjct: 202 LESIIPQVKIDTHLISETAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQAKEQQEK 261 Query: 260 I--------------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305 I ENA + ++T ++ A LF ++ D+ GA++I Sbjct: 262 IGLFLSDEQAAQLDTENAFVYSYGAET--VENATKELFAGLRALDEQGATTIFAQGFAET 319 Query: 306 GLGIAINNRLERAA 319 GLG A NRL+++A Sbjct: 320 GLGTAYMNRLKKSA 333 >gi|29377040|ref|NP_816194.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis V583] gi|227554050|ref|ZP_03984097.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis HH22] gi|229549322|ref|ZP_04438047.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis ATCC 29200] gi|255972031|ref|ZP_05422617.1| translation factor SUA5 [Enterococcus faecalis T1] gi|256763195|ref|ZP_05503775.1| translation factor SUA5 [Enterococcus faecalis T3] gi|256957796|ref|ZP_05561967.1| translation factor SUA5 [Enterococcus faecalis DS5] gi|256963676|ref|ZP_05567847.1| translation factor SUA5 [Enterococcus faecalis HIP11704] gi|257079734|ref|ZP_05574095.1| translation factor SUA5 [Enterococcus faecalis JH1] gi|257084462|ref|ZP_05578823.1| translation factor SUA5 [Enterococcus faecalis Fly1] gi|257419963|ref|ZP_05596957.1| translation factor SUA5 [Enterococcus faecalis T11] gi|294779686|ref|ZP_06745076.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis PC1.1] gi|300860679|ref|ZP_07106766.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TUSoD Ef11] gi|307271622|ref|ZP_07552893.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0855] gi|312953586|ref|ZP_07772423.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0102] gi|29344506|gb|AAO82264.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis V583] gi|227176798|gb|EEI57770.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis HH22] gi|229305559|gb|EEN71555.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis ATCC 29200] gi|255963049|gb|EET95525.1| translation factor SUA5 [Enterococcus faecalis T1] gi|256684446|gb|EEU24141.1| translation factor SUA5 [Enterococcus faecalis T3] gi|256948292|gb|EEU64924.1| translation factor SUA5 [Enterococcus faecalis DS5] gi|256954172|gb|EEU70804.1| translation factor SUA5 [Enterococcus faecalis HIP11704] gi|256987764|gb|EEU75066.1| translation factor SUA5 [Enterococcus faecalis JH1] gi|256992492|gb|EEU79794.1| translation factor SUA5 [Enterococcus faecalis Fly1] gi|257161791|gb|EEU91751.1| translation factor SUA5 [Enterococcus faecalis T11] gi|294453240|gb|EFG21652.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis PC1.1] gi|300849718|gb|EFK77468.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TUSoD Ef11] gi|306511500|gb|EFM80499.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0855] gi|310628424|gb|EFQ11707.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0102] gi|315035854|gb|EFT47786.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0027] gi|315151853|gb|EFT95869.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0031] gi|315159266|gb|EFU03283.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0312] gi|315170193|gb|EFU14210.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX1342] gi|315172488|gb|EFU16505.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX1346] gi|315574710|gb|EFU86901.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0309B] gi|315580978|gb|EFU93169.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0309A] gi|323481492|gb|ADX80931.1| SUA5 domain protein [Enterococcus faecalis 62] gi|329578088|gb|EGG59501.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX1467] Length = 340 Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 111/314 (35%), Positives = 177/314 (56%), Gaps = 23/314 (7%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP-LSLHL 83 +A PTETVYGL D+ N A++++Y++K RP+ NPLI HV+++ MVKK+ + P ++ L Sbjct: 24 VAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVATKL 83 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142 FWPGPLTL+ ++ S T T L+T FR+P T LIE PL PSAN Sbjct: 84 VSAFWPGPLTLIFNVPSDT-FSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPSANT 142 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV-RILRPGGLEIET 201 SG+ S T+ +H+ + +I I+D G ++IG+EST++++ E V ILRPG + E Sbjct: 143 SGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAITKEQ 201 Query: 202 LKRAI-SVELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKN 259 L+ I V+++ + + ET+ P++PGM HY+P ++V + + +A I+ + Sbjct: 202 LESIIPQVKIDTHLISETAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQAKEQQEK 261 Query: 260 I--------------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305 I ENA + ++T ++ A LF ++ D+ GA++I Sbjct: 262 IGLFLSDEQAAQLDTENAFVYSYGAET--VENATKELFAGLRALDEQGATTIFAQGFAET 319 Query: 306 GLGIAINNRLERAA 319 GLG A NRL+++A Sbjct: 320 GLGTAYMNRLKKSA 333 >gi|256961205|ref|ZP_05565376.1| Sua5/YciO/YrdC/YwlC [Enterococcus faecalis Merz96] gi|293384154|ref|ZP_06630048.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis R712] gi|293386968|ref|ZP_06631537.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis S613] gi|312907895|ref|ZP_07766878.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis DAPTO 512] gi|312978576|ref|ZP_07790314.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis DAPTO 516] gi|256951701|gb|EEU68333.1| Sua5/YciO/YrdC/YwlC [Enterococcus faecalis Merz96] gi|291078634|gb|EFE15998.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis R712] gi|291083638|gb|EFE20601.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis S613] gi|310625986|gb|EFQ09269.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis DAPTO 512] gi|311288725|gb|EFQ67281.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis DAPTO 516] gi|315161812|gb|EFU05829.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0645] Length = 340 Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 111/314 (35%), Positives = 177/314 (56%), Gaps = 23/314 (7%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP-LSLHL 83 +A PTETVYGL D+ N A++++Y++K RP+ NPLI HV+++ MVKK+ + P ++ L Sbjct: 24 VAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVATKL 83 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142 FWPGPLTL+ ++ S T T L+T FR+P T LIE PL PSAN Sbjct: 84 VSAFWPGPLTLIFNVPSDT-FSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPSANT 142 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV-RILRPGGLEIET 201 SG+ S T+ +H+ + +I I+D G ++IG+EST++++ E V ILRPG + E Sbjct: 143 SGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAITKEQ 201 Query: 202 LKRAIS-VELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKN 259 L+ IS V+++ + + E + P++PGM HY+P ++V + + +A I+ + Sbjct: 202 LESIISQVKIDTHLISENAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQATEQQEK 261 Query: 260 I--------------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305 I ENA + ++T ++ A LF ++ D+ GA++I Sbjct: 262 IGLFLSDEQAAQLDTENAFVYSYGAET--VENATKELFAGLRALDEQGATTIFAQGFAET 319 Query: 306 GLGIAINNRLERAA 319 GLG A NRL+++A Sbjct: 320 GLGTAYMNRLKKSA 333 >gi|312899931|ref|ZP_07759249.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0470] gi|311292927|gb|EFQ71483.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0470] Length = 340 Score = 176 bits (447), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 111/314 (35%), Positives = 176/314 (56%), Gaps = 23/314 (7%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP-LSLHL 83 +A PTETVYGL D+ N A++++Y++K RP+ NPLI HV+++ MVKK+ + P ++ L Sbjct: 24 VAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVATKL 83 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142 FWPGPLTL+ ++ S T T L+T FR+P T LIE PL PSAN Sbjct: 84 VSAFWPGPLTLIFNVPSDT-FSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPSANT 142 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV-RILRPGGLEIET 201 SG+ S T+ KH+ + +I I+D G ++IG+EST++++ E V ILRPG + E Sbjct: 143 SGKPSPTSAKHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAITKEQ 201 Query: 202 LKRAI-SVELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKN 259 L+ I V+++ + + E + P++PGM HY+P ++V + + +A I+ + Sbjct: 202 LESIIPQVKIDTHLISENAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQAKEQQEK 261 Query: 260 I--------------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305 I ENA + ++T ++ A LF ++ D+ GA++I Sbjct: 262 IGLFLSDEQAAQLDTENAFVYSYGAET--VENATKELFAGLRALDEQGATTIFAQGFAET 319 Query: 306 GLGIAINNRLERAA 319 GLG A NRL+++A Sbjct: 320 GLGTAYMNRLKKSA 333 >gi|254420853|ref|ZP_05034577.1| Sua5/YciO/YrdC/YwlC family protein, putative [Brevundimonas sp. BAL3] gi|196187030|gb|EDX82006.1| Sua5/YciO/YrdC/YwlC family protein, putative [Brevundimonas sp. BAL3] Length = 309 Score = 176 bits (446), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 119/321 (37%), Positives = 167/321 (52%), Gaps = 19/321 (5%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 M+ + +A L G I +PTETVYGL D+ N A+ +++ K RP NPLI H Sbjct: 1 MTQRSGDTADQAATALRRGELILLPTETVYGLGADAGNAEAVAAIFQAKGRPRFNPLISH 60 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-G 122 V+D + D + LA+ FWPGPLTLV + + L+ A L + RVP Sbjct: 61 VADAVAAEAVGVFDVSARALAEAFWPGPLTLVTPVRDGGRVCDLARAGLDSVAIRVPGHA 120 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 + ++ +G P+ PSANRSG+ S TN + + + +DGG +GLEST+V+ Sbjct: 121 AARAVLSAFGGPVVAPSANRSGRPSPTNFADAVEET-GFAVTAAVDGGPCAVGLESTVVS 179 Query: 183 VQCEKKVRILRPGGL---EIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 V +V +LRPG + EIE + + D +SPG L +HYAP + VR+ Sbjct: 180 V-LGGRVSLLRPGAVTRAEIEAV-------VGPLADGGDGHRSPGRLAAHYAPDAPVRID 231 Query: 240 AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF 299 V PR+ I G P +LS +G L+EAA NLF + AD + + IA Sbjct: 232 V--VAPRDGEILLGFGPGAGDPR----WSLSVSGDLREAAANLFRLFREADRTHPAGIAV 285 Query: 300 SSIPNHGLGIAINNRLERAAA 320 S IP+ GLG AIN+RL RAA Sbjct: 286 SPIPSQGLGEAINDRLRRAAG 306 >gi|257090698|ref|ZP_05585059.1| translation factor SUA5 [Enterococcus faecalis CH188] gi|312905239|ref|ZP_07764359.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0635] gi|256999510|gb|EEU86030.1| translation factor SUA5 [Enterococcus faecalis CH188] gi|310631476|gb|EFQ14759.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0635] gi|315579266|gb|EFU91457.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0630] Length = 340 Score = 176 bits (446), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 110/314 (35%), Positives = 177/314 (56%), Gaps = 23/314 (7%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP-LSLHL 83 +A PTETVYGL D+ N A++++Y++K RP+ NPLI HV+++ MVKK+ + P ++ L Sbjct: 24 VAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVATKL 83 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142 FWPGPLTL+ ++ S T T L+T FR+P T LIE PL PSAN Sbjct: 84 VSAFWPGPLTLIFNVPSDT-FSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPSANT 142 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV-RILRPGGLEIET 201 SG+ S T+ +H+ + +I I+D G ++IG+EST++++ E V ILRPG + E Sbjct: 143 SGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAITKEQ 201 Query: 202 LKRAI-SVELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIK- 258 L+ I V+++ + + ET+ P++PGM HY+P ++V + + +A I+ + Sbjct: 202 LESIIPQVKIDTHLISETAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQATEQQEK 261 Query: 259 -------------NIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305 +IEN + ++T ++ A LF ++ D+ GA++I Sbjct: 262 IGLFLSDKQAAQLDIENVFVYSYGAET--VENATKELFAGLRALDEQGATTIFAQGFAET 319 Query: 306 GLGIAINNRLERAA 319 GLG A NRL+++A Sbjct: 320 GLGTAYMNRLKKSA 333 >gi|149174845|ref|ZP_01853469.1| sua5 related protein [Planctomyces maris DSM 8797] gi|148846182|gb|EDL60521.1| sua5 related protein [Planctomyces maris DSM 8797] Length = 325 Score = 176 bits (446), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 119/328 (36%), Positives = 176/328 (53%), Gaps = 25/328 (7%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S ++ A + G +A TETVYGL ++ NP A+ +++ +K+RP +PLI H++ Sbjct: 6 SQNIQAAANLIRLGELVAFATETVYGLGANALNPEAVAQIFAVKQRPHFDPLIVHIASTG 65 Query: 69 MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + + + + LA FWPGPLTLVL + L T+ L + R+P +K Sbjct: 66 QLDELTTEFSSTAEKLASTFWPGPLTLVLP--KKKVVPDLVTSGLDSVAIRIPAHPVARK 123 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+E P+A PSAN+ G++S T + + + EI LI+DGG +G+EST++ + Sbjct: 124 LLEITQLPIAAPSANKFGRLSPTRAVDV-AEQLGDEIKLILDGGPCTVGVESTVIQCLGD 182 Query: 187 KKVRILRPGGLEIETLKRAIS----VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242 + V +LRPGG+ +E ++ I ELE E ++P SPGML HYAP + R I Sbjct: 183 QPV-LLRPGGISLEEIQACIGEIRLAELEDYA-EANSPVSPGMLPKHYAPST----RLII 236 Query: 243 VNPREALIRFGNV------PIKNIE----NAIISLNLSKTGKLKEAAFNLFNYMKIADDS 292 V+ E L G++ P+K+ E + LS TG LK AA N F ++ D + Sbjct: 237 VDHPEQLPAAGSLGVLSLYPLKDTEFRDCQFTVQQILSPTGDLKMAAANFFAALRKLDAA 296 Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAA 320 G I +P GLG INNRLERAAA Sbjct: 297 GIDQIVALRLPETGLGRTINNRLERAAA 324 >gi|15643615|ref|NP_228661.1| hypothetical protein TM0852 [Thermotoga maritima MSB8] gi|4981386|gb|AAD35934.1|AE001752_1 conserved hypothetical protein [Thermotoga maritima MSB8] Length = 335 Score = 176 bits (445), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 122/331 (36%), Positives = 171/331 (51%), Gaps = 32/331 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L++A E L G I PTETVYG+ D+ N A ++++++K+RPA NPLI H+ Sbjct: 13 DEKVLKEAAELLRNGEVIIFPTETVYGIGADAYNEEACKKIFKLKERPADNPLIVHIHSF 72 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 +++ A L K FWPGPLT++ S I P+ TA+L T R+P K Sbjct: 73 KQLEEIAEGYEPHLDFLKKFWPGPLTVIFRKKSEK-IPPVVTADLPTVAVRMPAHPVALK 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LIE +GHP+A PSAN SG+ S TNVKH++ + K + LIID G + GLESTIV++ E Sbjct: 132 LIELFGHPIAAPSANISGRPSATNVKHVIEDFMGK-VKLIIDAGDTPFGLESTIVDLTKE 190 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDE-------TSTPQSPGMLKSHYAPRSQVRLR 239 K V +LRPG +E+E LK E V + P +PGM HYAP + L Sbjct: 191 KPV-LLRPGPVEVERLKELFP---ELVVPDFVRKGNFKGRPLAPGMKYRHYAPLKPLIL- 245 Query: 240 AIHVNPREALIRFGNVPIKNIENAIISLNLSK--------TGKLKEA---AFNLFNYMKI 288 E L + V K ++ +I + K G LK A N+F+ ++ Sbjct: 246 ------VEDLTKMEEVLKKYPDHVVICVEERKELYDDRIVVGSLKNPYSIAQNIFSALRE 299 Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 A+ G I G+ A+ NRL +AA Sbjct: 300 AEKMGKEYIIVEGFEERGILFAVMNRLRKAA 330 >gi|227519762|ref|ZP_03949811.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0104] gi|227072850|gb|EEI10813.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0104] Length = 340 Score = 176 bits (445), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 111/314 (35%), Positives = 176/314 (56%), Gaps = 23/314 (7%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP-LSLHL 83 +A PTETVYGL D+ N A++++Y++K RP+ NPLI HV+++ MVKK+ + P ++ L Sbjct: 24 VAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVATKL 83 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142 FWPGPLTL+ ++ T T L+T FR+P T LIE PL PSAN Sbjct: 84 VSAFWPGPLTLIFNVPRDT-FSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPSANT 142 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV-RILRPGGLEIET 201 SG+ S T+ +H+ + +I I+D G ++IG+EST++++ E V ILRPG + E Sbjct: 143 SGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAITKEQ 201 Query: 202 LKRAI-SVELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKN 259 L+ I V+++ + + ET+ P++PGM HY+P ++V + + +A I+ + Sbjct: 202 LESIIPRVKIDTHLISETAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQAKEQQEK 261 Query: 260 I--------------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305 I ENA + ++T +K A LF ++ D+ GA++I Sbjct: 262 IGLFLSDEQAAQLDTENAFVYSYGAET--VKNATKELFAGLRALDEQGATTIFAQGFAET 319 Query: 306 GLGIAINNRLERAA 319 GLG A NRL+++A Sbjct: 320 GLGTAYMNRLKKSA 333 >gi|295113544|emb|CBL32181.1| translation factor SUA5 [Enterococcus sp. 7L76] Length = 340 Score = 176 bits (445), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 112/317 (35%), Positives = 178/317 (56%), Gaps = 23/317 (7%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP-LS 80 G +A PTETVYGL D+ N A++++Y++K RP+ NPLI HV+++ MVKK+ + P ++ Sbjct: 21 GELVAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVA 80 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPS 139 L FWPGPLTL+ ++ S T T L+T FR+P T LIE PL PS Sbjct: 81 TKLVSAFWPGPLTLIFNVPSDT-FSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPS 139 Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV-RILRPGGLE 198 AN SG+ S T+ +H+ + +I I+D G ++IG+EST++++ E V ILRPG + Sbjct: 140 ANTSGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAIT 198 Query: 199 IETLKRAIS-VELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVP 256 E L+ IS V+++ + + E + P++PGM HY+P ++V + + +A I+ Sbjct: 199 KEQLESIISQVKIDTHLISENAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQATEQ 258 Query: 257 IKNI--------------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302 + I ENA + ++T ++ A LF ++ D+ GA++I Sbjct: 259 QEKIGLFLSDEQAAQLDTENAFVYSYGAET--VENATKELFAGLRALDEQGATTIFAQGF 316 Query: 303 PNHGLGIAINNRLERAA 319 GLG A NRL+++A Sbjct: 317 AEIGLGTAYMNRLKKSA 333 >gi|16801746|ref|NP_472014.1| hypothetical protein lin2685 [Listeria innocua Clip11262] gi|16415221|emb|CAC97911.1| lin2685 [Listeria innocua Clip11262] Length = 345 Score = 175 bits (444), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 122/330 (36%), Positives = 182/330 (55%), Gaps = 19/330 (5%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 +KA E L G +A PTETVYGL D+ N AI+++Y K RP+ NPLI H++ + + Sbjct: 19 QKAAELLQNGECVAFPTETVYGLGADATNQAAIQKIYAAKGRPSDNPLIVHIAKREQMDQ 78 Query: 73 H-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 AS P +L L + FWPGPLT++L L + +S A L T R+P + +LI T Sbjct: 79 FIASYPPKALQLMEAFWPGPLTVILPLKKDSLAANVS-AGLSTVGVRMPEHPVSLELIAT 137 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 P+A PSANRSG+ S T +H++ + EI IIDGG + +GLEST+++ + + Sbjct: 138 ANIPIAAPSANRSGKPSPTTAEHVI-EDLDGEIAGIIDGGPTGVGLESTVIDCSLDVPI- 195 Query: 191 ILRPGGLEIETLKRAI-SVELEY-CVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248 ILRPGG+ IE +++ I +V+L ET P++PGM +HYAP++ V L ++ Sbjct: 196 ILRPGGITIEQIEQVIGTVDLSTNSTTETEKPKAPGMKYTHYAPKAPVYLVEGSSQFWQS 255 Query: 249 LI--------RFGNVPIKNIENAI-ISLNLSKTGKLK---EAAFNLFNYMKIADDSGASS 296 I + G + K + + + S + TG +K E A +L+ ++ D + Sbjct: 256 EINKVGIAGKKLGILATKELTSKLATSAVIQSTGSIKAMDEIATSLYKGLRAFDHADVDI 315 Query: 297 IAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326 I P LG AI NRLE+AA R S+ Sbjct: 316 IFAEVYPETELGAAIMNRLEKAAGNRRISE 345 >gi|257081920|ref|ZP_05576281.1| translation factor SUA5 [Enterococcus faecalis E1Sol] gi|307287619|ref|ZP_07567662.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0109] gi|256989950|gb|EEU77252.1| translation factor SUA5 [Enterococcus faecalis E1Sol] gi|306501357|gb|EFM70660.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0109] gi|315165016|gb|EFU09033.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX1302] Length = 340 Score = 175 bits (444), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 110/314 (35%), Positives = 176/314 (56%), Gaps = 23/314 (7%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP-LSLHL 83 +A PTETVYGL D+ N A++++Y++K RP+ NPLI HV+++ MVKK+ + P ++ L Sbjct: 24 VAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVATKL 83 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142 FWPGPLTL+ ++ S T T L+T FR+P T LIE PL PSAN Sbjct: 84 VSAFWPGPLTLIFNVPSDT-FSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPSANT 142 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV-RILRPGGLEIET 201 SG+ S T+ +H+ + +I I+D G ++IG+EST++++ E V ILRPG + E Sbjct: 143 SGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAITKEQ 201 Query: 202 LKRAI-SVELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKN 259 L+ I V+++ + + ET+ P++PGM HY+P ++V + + +A I+ + Sbjct: 202 LESIIPQVKIDTHLISETAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQATEQQEK 261 Query: 260 I--------------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305 I EN + ++T ++ A LF ++ D+ GA++I Sbjct: 262 IGLFLSDKQAAQLDTENVFVYSYGAET--VENATKELFAGLRALDEQGATTIFAQGFAET 319 Query: 306 GLGIAINNRLERAA 319 GLG A NRL+++A Sbjct: 320 GLGTAYMNRLKKSA 333 >gi|315032689|gb|EFT44621.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0017] gi|315143716|gb|EFT87732.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX2141] Length = 340 Score = 175 bits (443), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 110/314 (35%), Positives = 176/314 (56%), Gaps = 23/314 (7%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP-LSLHL 83 +A PTETVYGL D+ N A++++Y++K RP+ NPLI HV+++ MVKK+ + P ++ L Sbjct: 24 VAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVATKL 83 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142 FWPGPLTL+ ++ S T T L+T FR+P T LIE PL PSAN Sbjct: 84 VSAFWPGPLTLIFNVPSDT-FSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPSANT 142 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV-RILRPGGLEIET 201 SG+ S T+ +H+ + +I I+D G ++IG+EST++++ E V ILRPG + E Sbjct: 143 SGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAITKEQ 201 Query: 202 LKRAI-SVELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKN 259 L+ I V+++ + + ET+ P++PGM HY+P ++V + + +A I+ + Sbjct: 202 LESIIPQVKIDTHLISETAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQAKEQQEK 261 Query: 260 I--------------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305 I EN + ++T ++ A LF ++ D+ GA++I Sbjct: 262 IGLFLSDEQAAQLDTENTFVYSYGAET--VENATKELFAGLRALDEQGATTIFAQGFAET 319 Query: 306 GLGIAINNRLERAA 319 GLG A NRL+++A Sbjct: 320 GLGTAYMNRLKKSA 333 >gi|256616931|ref|ZP_05473777.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis ATCC 4200] gi|307276804|ref|ZP_07557915.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX2134] gi|256596458|gb|EEU15634.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis ATCC 4200] gi|306506441|gb|EFM75600.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX2134] Length = 340 Score = 175 bits (443), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 110/314 (35%), Positives = 176/314 (56%), Gaps = 23/314 (7%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP-LSLHL 83 +A PTETVYGL D+ N A++++Y++K RP+ NPLI HV+++ MVKK+ + P ++ L Sbjct: 24 VAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVATKL 83 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142 FWPGPLTL+ ++ S T T L+T FR+P T LIE PL PSAN Sbjct: 84 VSAFWPGPLTLIFNVPSDT-FSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPSANT 142 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV-RILRPGGLEIET 201 SG+ S T+ +H+ + +I I+D G ++IG+EST++++ E V ILRPG + E Sbjct: 143 SGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAITKEQ 201 Query: 202 LKRAI-SVELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKN 259 L+ I V+++ + + E + P++PGM HY+P ++V + + +A I+ + Sbjct: 202 LESIIPQVKIDTHLISENAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQATEQQEK 261 Query: 260 I--------------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305 I ENA + ++T ++ A LF ++ D+ GA++I Sbjct: 262 IGLFLSDDQAAQLDTENAFVYSYGAET--VENATKELFAGLRALDEQGATTIFAQGFAET 319 Query: 306 GLGIAINNRLERAA 319 GLG A NRL+++A Sbjct: 320 GLGTAYMNRLKKSA 333 >gi|229545078|ref|ZP_04433803.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX1322] gi|229309970|gb|EEN75957.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX1322] Length = 340 Score = 175 bits (443), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 110/314 (35%), Positives = 176/314 (56%), Gaps = 23/314 (7%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP-LSLHL 83 +A PTETVYGL D+ N A++++Y++K RP+ NPLI HV+++ MVKK+ + P ++ L Sbjct: 24 VAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVATKL 83 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142 FWPGPLTL+ ++ S T T L+T FR+P T LIE PL PSAN Sbjct: 84 VSAFWPGPLTLIFNVPSDT-FSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPSANT 142 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV-RILRPGGLEIET 201 SG+ S T+ +H+ + +I I+D G ++IG+EST++++ E V ILRPG + E Sbjct: 143 SGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAITKEQ 201 Query: 202 LKRAI-SVELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKN 259 L+ I V+++ + + ET+ P++PGM HY+P ++V + + +A I+ + Sbjct: 202 LESIIPQVKIDTHLISETAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQAKEQQEK 261 Query: 260 I--------------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305 I EN + ++T ++ A LF ++ D+ GA++I Sbjct: 262 IGLFLSDKQAAQLDTENVFVYSYGAET--VENATKELFAGLRALDEQGATTIFAQGFAET 319 Query: 306 GLGIAINNRLERAA 319 GLG A NRL+++A Sbjct: 320 GLGTAYMNRLKKSA 333 >gi|257087539|ref|ZP_05581900.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis D6] gi|256995569|gb|EEU82871.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis D6] gi|315025304|gb|EFT37236.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX2137] Length = 340 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 110/314 (35%), Positives = 176/314 (56%), Gaps = 23/314 (7%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP-LSLHL 83 +A PTETVYGL D+ N A++++Y++K RP+ NPLI HV+++ MVKK+ + P ++ L Sbjct: 24 VAFPTETVYGLGADALNKAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVATKL 83 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142 FWPGPLTL+ ++ S T T L+T FR+P T LIE PL PSAN Sbjct: 84 VSAFWPGPLTLIFNVPSDT-FSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPSANT 142 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV-RILRPGGLEIET 201 SG+ S T+ +H+ + +I I+D G ++IG+EST++++ E V ILRPG + E Sbjct: 143 SGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAITKEQ 201 Query: 202 LKRAI-SVELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKN 259 L+ I V+++ + + E + P++PGM HY+P ++V + + +A I+ + Sbjct: 202 LESIIPQVKIDTHLISENAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQAKEQQEK 261 Query: 260 I--------------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305 I ENA + ++T ++ A LF ++ D+ GA++I Sbjct: 262 IGLFLSDEQAAQLDTENAFVYSYGAET--VENATKELFAGLRALDEQGATTIFAQGFAET 319 Query: 306 GLGIAINNRLERAA 319 GLG A NRL+++A Sbjct: 320 GLGTAYMNRLKKSA 333 >gi|315148530|gb|EFT92546.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX4244] Length = 340 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 110/314 (35%), Positives = 176/314 (56%), Gaps = 23/314 (7%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP-LSLHL 83 +A PTETVYGL D+ N A++++Y++K RP+ NPLI HV+++ MVKK+ + P ++ L Sbjct: 24 VAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVATKL 83 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142 FWPGPLTL+ ++ T T L+T FR+P T LIE PL PSAN Sbjct: 84 VSAFWPGPLTLIFNVPRDT-FSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPSANT 142 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV-RILRPGGLEIET 201 SG+ S T+ +H+ + +I I+D G ++IG+EST++++ E V ILRPG + E Sbjct: 143 SGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAITKEQ 201 Query: 202 LKRAI-SVELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKN 259 L+ I V+++ + + ET+ P++PGM HY+P ++V + + +A I+ + Sbjct: 202 LESIIPQVKIDTHLISETAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQAKEQQEK 261 Query: 260 I--------------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305 I ENA + ++T ++ A LF ++ D+ GA++I Sbjct: 262 IGLFLSDEQAAQLDTENAFVYSYGAET--VENATKELFAGLRALDEQGATTIFAQGFAET 319 Query: 306 GLGIAINNRLERAA 319 GLG A NRL+++A Sbjct: 320 GLGTAYMNRLKKSA 333 >gi|313622340|gb|EFR92826.1| protein Sua5 [Listeria innocua FSL J1-023] Length = 345 Score = 174 bits (442), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 123/337 (36%), Positives = 179/337 (53%), Gaps = 33/337 (9%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 +KA E L G +A PTETVYGL D+ N AI+++Y K RP+ NPLI H++ + + Sbjct: 19 QKAAELLQNGECVAFPTETVYGLGADATNQAAIQKIYAAKGRPSDNPLIVHIAKREQMDQ 78 Query: 73 H-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 AS P +L L + FWPGPLT++L L + +S A L T R+P + +LI T Sbjct: 79 FIASYPPKALQLMEAFWPGPLTVILPLKKDSLAANVS-AGLSTVGVRMPEHPVSLELIAT 137 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 P+A PSANRSG+ S T +H++ + E+ IIDGG + +GLEST+++ + + Sbjct: 138 ANIPIAAPSANRSGKPSPTTAEHVI-EDLDGEVAGIIDGGPTGVGLESTVIDCSLDVPI- 195 Query: 191 ILRPGGLEIETLKRAI-SVELEY-CVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248 ILRPGG+ E +++ I +V+L V ET P++PGM +HYAP++ V L E Sbjct: 196 ILRPGGITKEQIEQVIGTVDLSTNSVTETEKPKAPGMKYTHYAPKAPVYL-------VEG 248 Query: 249 LIRFGNVPIKNIENAIISLN----------------LSKTGKLK---EAAFNLFNYMKIA 289 +F I +E A L + TG +K E A +L+ ++ Sbjct: 249 SSQFWQSEINKVETAGKKLGILATKELTSKLATSAVIQPTGSIKAMDEIATSLYKGLRAF 308 Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326 D + I P LG AI NRLE+AA R S+ Sbjct: 309 DHADVDIIFAEVYPETELGAAIMNRLEKAAGNRRISE 345 >gi|327441446|dbj|BAK17811.1| putative translation factor [Solibacillus silvestris StLB046] Length = 343 Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 114/335 (34%), Positives = 184/335 (54%), Gaps = 19/335 (5%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + +S +A + L+ G +A PTETVYGL + N A+++++ K RP+ NPLI H+ Sbjct: 12 VDNSENYTQAVDLLNNGEIVAFPTETVYGLGAVATNEQAVKKIFAAKGRPSDNPLIVHIG 71 Query: 66 DISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 + V + + + ++ + + FWPGPLTLV+D+ + P TA L T R+P Sbjct: 72 TVEEVSLYTTNISEVAQNCMEAFWPGPLTLVMDVKPNV-LAPSVTAGLDTVGIRMPDHPV 130 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 +L++T PLA PSANRSG+ S T +H+ + IP I+DGG++ IGLEST+++V Sbjct: 131 ALELLQTLKKPLAAPSANRSGKPSPTKAEHVF-EDLQNIIPCILDGGVTGIGLESTVLDV 189 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDET---STPQSPGMLKSHYAPRSQVRL-- 238 + V ILRPGG+ E L+ I +E +++ STP++PGM +HYAP + V L Sbjct: 190 TLDTPV-ILRPGGVTKEMLEAVIGPVVEPSLEQQKIDSTPKAPGMKYTHYAPDAPVYLIE 248 Query: 239 ---RAI-----HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD 290 +AI + P + + IE A + L++ + +L++ ++ D Sbjct: 249 ANKKAIETAIAELKPVHKVALLAPQNFEEIE-ADYYFSFGSAHDLEQMSASLYDALRSCD 307 Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325 + A+ I ++ G+G AI NRLE+AA + S Sbjct: 308 KTDATIILATATSKTGVGTAIMNRLEKAAGGKWYS 342 >gi|18976678|ref|NP_578035.1| sua5 superfamily-related protein [Pyrococcus furiosus DSM 3638] gi|18892255|gb|AAL80430.1| sua5 superfamily-related protein [Pyrococcus furiosus DSM 3638] Length = 341 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 122/333 (36%), Positives = 175/333 (52%), Gaps = 30/333 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D LR A + G +A PTETVYGL D+ N A RR++E K RPA NPLI H+++ Sbjct: 12 DERKLRVAARLIREGKLVAFPTETVYGLGADALNEKAARRIFEAKGRPADNPLIVHIAEF 71 Query: 68 SMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCG-FT 124 S V + A P LAK FWPGPLT+V L +I P ++T L T R+P Sbjct: 72 SQVYELAREVPEEAKMLAKKFWPGPLTIV---LPRREIVPDVTTGGLDTVAIRMPANEIA 128 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 KLI+ G P+A PSAN SG+ S T +H+ + +I IIDGG +KIG+EST++++ Sbjct: 129 LKLIKLSGRPIAAPSANISGKPSPTTAEHV-ADDFYGKIECIIDGGETKIGVESTVIDL- 186 Query: 185 CEKKVRILRPGGLEIETLKRAIS-VELEYCV--DETSTPQSPGMLKSHYAPRSQVRLRAI 241 E +LRPGGL +E +++ I V + V + +SPGM HYAP ++V + Sbjct: 187 TEWPPVLLRPGGLPLEEIEKVIGEVRIHPAVFGKKVDVAKSPGMKYKHYAPDAEV---IV 243 Query: 242 HVNPREALIRFGNVPIKNIE--------------NAIISLNLSKTGKLKEAAFNLFNYMK 287 P+E + R +K + NA L +T ++E A NLF ++ Sbjct: 244 VEGPKEKVKRKIAELVKEFKEKGKRVGVIGSESYNADEFFYLGET--VEEVARNLFKALR 301 Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 D + + + GLG+A+ NRL +AA Sbjct: 302 YMDKAKVDIVLAEGVEEKGLGLAVMNRLRKAAG 334 >gi|257421858|ref|ZP_05598848.1| conserved hypothetical protein [Enterococcus faecalis X98] gi|257163682|gb|EEU93642.1| conserved hypothetical protein [Enterococcus faecalis X98] gi|315155437|gb|EFT99453.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0043] Length = 340 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 110/317 (34%), Positives = 176/317 (55%), Gaps = 23/317 (7%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP-LS 80 G +A PTETVYGL D+ N A++++Y++K RP+ NPLI HV+++ MVKK+ + P ++ Sbjct: 21 GELVAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVA 80 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPS 139 L FWPGPLTL+ ++ T T L+T FR+P T LIE PL PS Sbjct: 81 TKLVSAFWPGPLTLIFNVPRDT-FSKTVTGGLETVAFRMPDNQATLTLIEQANVPLVGPS 139 Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV-RILRPGGLE 198 AN SG+ S T+ +H+ + +I I+D G ++IG+EST++++ E V ILRPG + Sbjct: 140 ANTSGKPSPTSAEHVY-HDLQGKIAAILDDGSTQIGVESTVLDLTAEDGVPVILRPGAIT 198 Query: 199 IETLKRAI-SVELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVP 256 E L+ I V+++ + + ET+ P++PGM HY+P ++V + + +A I+ Sbjct: 199 KEQLESVIPQVKIDTHLISETAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQAKEQ 258 Query: 257 IKNI--------------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302 + I EN + ++T ++ A LF ++ D+ GA++I Sbjct: 259 QEKIGLFLSDEQAAQLDTENTFVYSYGAET--VENATKELFAGLRALDEQGATTIFAQGF 316 Query: 303 PNHGLGIAINNRLERAA 319 GLG A NRL+++A Sbjct: 317 AETGLGTAYMNRLKKSA 333 >gi|116873906|ref|YP_850687.1| Sua5/YciO/YrdC/YwlC family protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742784|emb|CAK21908.1| Sua5/YciO/YrdC/YwlC family protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 345 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 123/345 (35%), Positives = 182/345 (52%), Gaps = 35/345 (10%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 +++ + ++A + L G +A PTETVYGL D+ N AI+++Y K RP+ NPLI H++ Sbjct: 12 LSNQSIYQEAAKLLQKGECVAFPTETVYGLGADATNQAAIQKIYTAKGRPSDNPLIVHIA 71 Query: 66 DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 + + S P ++ L + FWPGPLTL+L L+ + +S A L T R+P Sbjct: 72 RREQMDQFVESYPPKAIQLMEKFWPGPLTLILPLIKDSLAANVS-AGLSTVGVRMPEHPV 130 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + LI+T P+A PSANRSG+ S T H++ + +I IIDGG + +GLEST+++ Sbjct: 131 SLDLIKTANIPVAAPSANRSGKPSPTTAAHVI-EDLDGKIAGIIDGGPTGVGLESTVIDC 189 Query: 184 QCEKKVRILRPGGLEIETLKRAIS-VELEY-CVDETSTPQSPGMLKSHYAPRSQVRLRAI 241 E V ILRPGG+ E ++R I V++ ET P++PGM +HYAP++ V L Sbjct: 190 SQETPV-ILRPGGITKEQIERVIGPVKVATNSTTETEQPKAPGMKYTHYAPKAPVYL--- 245 Query: 242 HVNPREALIRFGNVPIKNIE--------------------NAIISLNLSKTGKLKEAAFN 281 E +F I +E NA+I S T L+E A + Sbjct: 246 ----IEGSAKFWQSEIDKVEAAHKKLGILATKELTSSLSTNAVIQTTGS-TRALEEVATS 300 Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326 L+N ++ D + I P LG AI NRLE+AA R S+ Sbjct: 301 LYNGLRAFDHADVDVIFAEVYPETELGAAIMNRLEKAAGNRRISE 345 >gi|71083313|ref|YP_266032.1| Sua5/YciO/YrdC family protein [Candidatus Pelagibacter ubique HTCC1062] gi|71062426|gb|AAZ21429.1| Sua5/YciO/YrdC family protein [Candidatus Pelagibacter ubique HTCC1062] Length = 310 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 112/317 (35%), Positives = 170/317 (53%), Gaps = 15/317 (4%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 ++ + ++KA ++LD I +PTETVYGLA ++ +A++++Y +KKRP NPLI H D Sbjct: 3 SNQSNIKKAKKYLDKNYCIGVPTETVYGLAANAYKNSAVKKIYNLKKRPKNNPLIVHYHD 62 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTK 125 I +KK ++ + L K F PGP+T VL L + I T N K+ R P K Sbjct: 63 IDSLKKDCLINDNFIKLYKKFSPGPITYVLQLKKNSKISKYVTNNKKSLAVRFPKHTIFK 122 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 L++ +PLA PSAN + ++S K + +I I+DGG IG+ESTIVN+ Sbjct: 123 NLLKQLDYPLAAPSANITTKVSAVKAKDV-KEEFGNKIKYILDGGTCAIGIESTIVNLTA 181 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQ---SPGMLKSHYAPRSQVRLRAIH 242 K ILR GGL+I +++A+ ++ + ++ P+ +PG + HY+P +R+ Sbjct: 182 --KPTILRLGGLDISKIQKALGFKM----NISTNPKKKIAPGQSRLHYSPGIPLRMNVTK 235 Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302 EA I K L+ L EAA NL++ ++ + G SIA I Sbjct: 236 PKNNEAFILIKKKKTKLKS----YFYLTSKSNLDEAAKNLYSCLRKIKNKGYKSIAVEKI 291 Query: 303 PNHGLGIAINNRLERAA 319 PN GLG IN+RL RA+ Sbjct: 292 PNIGLGKTINDRLRRAS 308 >gi|297564656|ref|YP_003683628.1| Sua5/YciO/YrdC/YwlC family protein [Meiothermus silvanus DSM 9946] gi|296849105|gb|ADH62120.1| Sua5/YciO/YrdC/YwlC family protein [Meiothermus silvanus DSM 9946] Length = 327 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 115/315 (36%), Positives = 175/315 (55%), Gaps = 9/315 (2%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 T + +A + G +A PTETVYGL ++ + +A+ R++E K+RP+++PLI HV+D Sbjct: 15 TTPREIEQAARVIREGGLVAFPTETVYGLGANALDASAVARIFEAKRRPSLDPLIVHVAD 74 Query: 67 ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124 +M+ + A V P L + FWPGPLTLVL + + T+ L T R+P Sbjct: 75 RAMLLRVAREVPPQVEPLMEKFWPGPLTLVLP--KAEAVPGIVTSGLPTVAVRMPAHPVA 132 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 +LI G P+A PSAN G +S T +H+ + + + LI+DGG + G+ESTI+ + Sbjct: 133 LELIRQAGLPIAAPSANPFGYLSPTRAEHV-ERMLGEAVDLILDGGPTLYGVESTIL-LL 190 Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244 EK V +LR G + +E L+ +I +E V E+ P PG L HYAPR+ +++ Sbjct: 191 AEKPV-VLRHGAIPLEELE-SILGRVELRVGESVRPLVPGQLPQHYAPRTPIQVARPDEV 248 Query: 245 PREALIRFGNVPIKNIENAI-ISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303 P+E + G + +++ I LS TG L+EAA +LF + D G +I +P Sbjct: 249 PKELRKQSGYLAFRDVPKGFKIVKVLSPTGDLREAAAHLFEALHQLDRLGLPAIYAEPVP 308 Query: 304 NHGLGIAINNRLERA 318 GLG AI +RL RA Sbjct: 309 EEGLGRAIMDRLRRA 323 >gi|308071165|ref|YP_003872770.1| hypothetical protein PPE_04472 [Paenibacillus polymyxa E681] gi|305860444|gb|ADM72232.1| Conserved hypothetical protein [Paenibacillus polymyxa E681] Length = 415 Score = 173 bits (439), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 120/346 (34%), Positives = 176/346 (50%), Gaps = 34/346 (9%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I +R+A L AG +A PTETVYGL D+R+ A+ ++ K RP+ NPLI H+S Sbjct: 71 IAAEKGIREASVLLQAGETVAFPTETVYGLGADARSTKAVEAVFVAKGRPSDNPLIVHIS 130 Query: 66 DISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 D ++ S ++ + L +FWPGPLTLVL ++ + TA L T R+P Sbjct: 131 DADQLEGMVSEINDTARELMNMFWPGPLTLVLPVVPQA-LSSRVTAGLDTVGVRMPDHPI 189 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 +LI G PLA PSANRSG+ S T +H+ + I I+DGG + +GLEST+V Sbjct: 190 ALRLIAEAGCPLAAPSANRSGRPSPTLARHV-REDLEGRIGGILDGGPTGVGLESTVVQA 248 Query: 184 QCEKKVRILRPGGLEIE---TLKRAISVELEYCVD-----ETSTPQSPGMLKSHYAPRSQ 235 + V ILRPGG+ E T+ RA+ ++ ++ P+SPGM +HYAPR + Sbjct: 249 GDDGTVTILRPGGVTAEQLATVARAVVLDPALAATPGEDADSPAPRSPGMKYTHYAPRGR 308 Query: 236 VRL----RAIHVNPREALIR--FGNVPIKNIENAIISLN-------------LSKTGKLK 276 + + ++ V IR + A+++ + L K L Sbjct: 309 LSVVQGPSSVKVT---GWIRAALAEASARGERTAVLAFDEHAAGYAGERVYTLGKLDALH 365 Query: 277 EAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 EAA L+ ++ D+ G + I S P GLG A+ NRL +AA R Sbjct: 366 EAAQRLYGVLRRCDEDGVTYILSESCPPKGLGDAVMNRLLKAAGHR 411 >gi|256853868|ref|ZP_05559233.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis T8] gi|307290431|ref|ZP_07570346.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0411] gi|256710811|gb|EEU25854.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis T8] gi|306498624|gb|EFM68126.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0411] gi|315030389|gb|EFT42321.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX4000] Length = 340 Score = 173 bits (439), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 110/314 (35%), Positives = 176/314 (56%), Gaps = 23/314 (7%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP-LSLHL 83 +A PTETVYGL + N A++++Y++K RP+ NPLI HV+++ MVKK+ + P ++ L Sbjct: 24 VAFPTETVYGLGAAALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVATKL 83 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142 FWPGPLTL+ ++ S T T L+T FR+P T LIE PL PSAN Sbjct: 84 VSAFWPGPLTLIFNVPSDT-FSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPSANT 142 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV-RILRPGGLEIET 201 SG+ S T+ +H+ + +I I+D G ++IG+EST++++ E V ILRPG + E Sbjct: 143 SGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAITKEQ 201 Query: 202 LKRAI-SVELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKN 259 L+ I V+++ + + ET+ P++PGM HY+P ++V + + +A I+ + Sbjct: 202 LESIIPQVKIDTHLISETAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQAKEQQEK 261 Query: 260 I--------------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305 I ENA + ++T ++ A LF ++ D+ GA++I Sbjct: 262 IGLFLSDEQAAQLDTENAFVYSYGAET--VENATKELFAGLRALDEQGATTIFAQGFAET 319 Query: 306 GLGIAINNRLERAA 319 GLG A NRL+++A Sbjct: 320 GLGTAYMNRLKKSA 333 >gi|315168546|gb|EFU12563.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX1341] Length = 340 Score = 173 bits (438), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 110/314 (35%), Positives = 176/314 (56%), Gaps = 23/314 (7%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP-LSLHL 83 +A PTETVYGL D+ N A++++Y++K RP+ NPLI HV+++ MVKK+ + P ++ L Sbjct: 24 VAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVATKL 83 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142 FWPGPLTL+ ++ S T T L+T FR+P T LIE PL PSAN Sbjct: 84 VSAFWPGPLTLIFNVPSDT-FSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPSANT 142 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV-RILRPGGLEIET 201 SG+ S T+ +H+ + +I I+D G ++IG+EST++++ E V ILRPG + E Sbjct: 143 SGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAITKEQ 201 Query: 202 LKRAI-SVELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKN 259 L+ I V+++ + + ET+ P++PGM HY+P ++V + + +A I+ + Sbjct: 202 LESIIPQVKIDTHLISETAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQAKEQQEK 261 Query: 260 I--------------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305 I ENA + ++T ++ A LF ++ D+ A++I Sbjct: 262 IGLFLSDEQAAQLDTENAFVYSYGAET--VENATKELFAGLRALDEQRATTIFAQGFAET 319 Query: 306 GLGIAINNRLERAA 319 GLG A NRL+++A Sbjct: 320 GLGTAYMNRLKKSA 333 >gi|255975088|ref|ZP_05425674.1| translation factor SUA5 [Enterococcus faecalis T2] gi|307285599|ref|ZP_07565738.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0860] gi|255967960|gb|EET98582.1| translation factor SUA5 [Enterococcus faecalis T2] gi|306502823|gb|EFM72088.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0860] Length = 340 Score = 173 bits (438), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 109/314 (34%), Positives = 175/314 (55%), Gaps = 23/314 (7%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP-LSLHL 83 +A PTETVYGL D+ N A++++Y++K RP+ NPLI HV+++ MVKK+ + P ++ L Sbjct: 24 VAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVATKL 83 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142 FWPGPLTL+ ++ S T T L+T FR+P T LIE PL PSAN Sbjct: 84 VSAFWPGPLTLIFNVPSDT-FSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPSANT 142 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV-RILRPGGLEIET 201 SG+ S T+ +H+ + +I I+D G ++IG+EST++++ E V ILRPG + E Sbjct: 143 SGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAITKEQ 201 Query: 202 LKRAI-SVELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKN 259 L+ I V+++ + + E + P++PGM HY+P ++V + + +A I+ + Sbjct: 202 LESIIPQVKIDTHLISENAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQATEQQEK 261 Query: 260 I--------------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305 I EN + ++T ++ A LF ++ D+ GA++I Sbjct: 262 IGLFLSDKQAAQLDTENVFVYSYGAET--VENATKELFAGLRALDEQGATTIFAQGFAET 319 Query: 306 GLGIAINNRLERAA 319 GLG A NRL+++A Sbjct: 320 GLGTAYMNRLKKSA 333 >gi|302383673|ref|YP_003819496.1| Sua5/YciO/YrdC/YwlC family protein [Brevundimonas subvibrioides ATCC 15264] gi|302194301|gb|ADL01873.1| Sua5/YciO/YrdC/YwlC family protein [Brevundimonas subvibrioides ATCC 15264] Length = 325 Score = 173 bits (438), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 113/313 (36%), Positives = 161/313 (51%), Gaps = 13/313 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S L A L AG + +PTETVYGLA D+ A+ R++E K RP NPLI HV+D Sbjct: 22 SEGLDAAVAALRAGDLVILPTETVYGLAADAGRAEAVARIFEAKGRPRFNPLIAHVADTG 81 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 + A D + LA FWPGPLT+V + + L+ A L + RVP + L Sbjct: 82 AAEAIAVFDDAARALAAAFWPGPLTIVAPVRPGDRVCDLARAGLDSVAVRVPGHPVARAL 141 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ +G P+ PSANRSG+ S T + + +DGG +G+EST+V+V + Sbjct: 142 LQAFGGPVVAPSANRSGRPSPTTFADAMEET-GSSAAAALDGGPCDVGVESTVVSV-LDG 199 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 +V +LRPG + + ++ + + +SPG L HYAP + VR+ A E Sbjct: 200 RVTLLRPGAVTRDQIEALVG----PLAESDHGHRSPGRLTLHYAPDAPVRIDAETAGEGE 255 Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307 L+ FG + NLS +G +EAA LF ++ AD IA + +P GL Sbjct: 256 ILLGFGP------GSGDPRWNLSPSGDPREAAAKLFRLLREADREHPVGIAVAPVPMAGL 309 Query: 308 GIAINNRLERAAA 320 G AIN+RL RAA Sbjct: 310 GEAINDRLRRAAG 322 >gi|315150061|gb|EFT94077.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0012] Length = 340 Score = 173 bits (438), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 109/314 (34%), Positives = 175/314 (55%), Gaps = 23/314 (7%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP-LSLHL 83 +A PTETVYGL D+ N A++++Y++K RP+ NPLI HV+++ MVKK+ + P ++ L Sbjct: 24 VAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVATKL 83 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142 FWPGPLTL+ ++ T T L+T FR+P T LIE PL PSAN Sbjct: 84 VSAFWPGPLTLIFNVPRDT-FSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPSANT 142 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV-RILRPGGLEIET 201 SG+ S T+ +H+ + +I I+D G ++IG+EST++++ E V ILRPG + E Sbjct: 143 SGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAITKEQ 201 Query: 202 LKRAI-SVELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKN 259 L+ I V+++ + + E + P++PGM HY+P ++V + + +A I+ + Sbjct: 202 LESIIPQVKIDTHLISENAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQAKEQQEK 261 Query: 260 I--------------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305 I ENA + ++T ++ A LF ++ D+ GA++I Sbjct: 262 IGLFLSDEQAAQLDTENAFVYSYGAET--VENATKELFAGLRALDEQGATTIFAQGFAET 319 Query: 306 GLGIAINNRLERAA 319 GLG A NRL+++A Sbjct: 320 GLGTAYMNRLKKSA 333 >gi|315230833|ref|YP_004071269.1| YrdC/Sua5 protein [Thermococcus barophilus MP] gi|315183861|gb|ADT84046.1| putative YrdC/Sua5 protein [Thermococcus barophilus MP] Length = 341 Score = 172 bits (437), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 116/331 (35%), Positives = 176/331 (53%), Gaps = 23/331 (6%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 D+ ++ A +F+ G +A PTETVYGL D+ N A+RR++E K RPA NPLI H++ Sbjct: 11 VDNRKIKIAAKFIREGKLVAFPTETVYGLGADALNEKAVRRIFEAKGRPADNPLIVHIAR 70 Query: 67 ISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124 + + A P LA+ FWPGPLT+VL ++ +T L T R+P Sbjct: 71 FEQLYELARNVPREAEILAEHFWPGPLTIVLP--KKDNVPKTTTGGLDTVAIRMPAHEIA 128 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 LI+ G P+A PSAN SG+ S T +H++ + I IIDGG KIG+EST++++ Sbjct: 129 LNLIKASGRPIAAPSANISGKPSPTLAEHVVDDFYGR-IECIIDGGEVKIGVESTVLDLT 187 Query: 185 CEKKVRILRPGGLEIETLKRAIS-VELEYCVDETST--PQSPGMLKSHYAPRSQV----- 236 K +LRPGGL +E ++R I +++ V + ++PGM HYAP +QV Sbjct: 188 T-KPPTLLRPGGLPLEEIERIIGRIKIHPAVKGKTVDIAKAPGMKYKHYAPNAQVIVIEG 246 Query: 237 -------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIA 289 +++ + ++ I+ G + + A +NL + +E A NLF ++ Sbjct: 247 NREKVKEKIKELLKEYKKRGIKVGIMATGDFYEADAYVNLGNSE--EEVAKNLFRALREL 304 Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 D SG I I GLG+A+ NRL +AA Sbjct: 305 DKSGVDVILAEGIEEKGLGLAVMNRLRKAAG 335 >gi|281411518|ref|YP_003345597.1| Sua5/YciO/YrdC/YwlC family protein [Thermotoga naphthophila RKU-10] gi|281372621|gb|ADA66183.1| Sua5/YciO/YrdC/YwlC family protein [Thermotoga naphthophila RKU-10] Length = 335 Score = 172 bits (437), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 120/328 (36%), Positives = 172/328 (52%), Gaps = 26/328 (7%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 + L++A E L G I PTETVYG+ D+ N A ++++E+K RPA NPLI H+ + Sbjct: 13 NEKVLKEAVELLQNGEVIIFPTETVYGIGADAYNEEACKKIFELKGRPADNPLIVHIHSL 72 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 +++ A L K FWPGPLT++L S I P+ TA L T R+P K Sbjct: 73 EQLEEIAEGYEPHLDFLKKFWPGPLTVILRKKSEK-IPPVVTAGLPTVAVRMPAHPVALK 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LIE +G+P+A PSAN SG+ S TNVKH++ + K + LIID G + GLESTIV++ E Sbjct: 132 LIELFGNPIAAPSANISGRPSATNVKHVVEDFMGK-VKLIIDAGDTPFGLESTIVDLTKE 190 Query: 187 KKVRILRPGGLEIETLKR----AISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242 K V +LRPG +E+E LK + + + P +PGM HYAP + L Sbjct: 191 KPV-LLRPGPVEVERLKELFPGLVVPDFVRKGNFKGRPLAPGMKYRHYAPLKPLIL---- 245 Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSK--------TGKLKEA---AFNLFNYMKIADD 291 E L + V K ++ +I + K G LK+ A N+F+ ++ A+ Sbjct: 246 ---VEDLTKMEEVLKKYPDHVVICVQERKELYDDRIVVGSLKKPYSIAQNIFSALREAEK 302 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAA 319 G I G+ A+ NRL +AA Sbjct: 303 MGKEYIIVEGFEERGILFAVMNRLRKAA 330 >gi|160881865|ref|YP_001560833.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium phytofermentans ISDg] gi|160430531|gb|ABX44094.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium phytofermentans ISDg] Length = 352 Score = 172 bits (436), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 128/341 (37%), Positives = 183/341 (53%), Gaps = 37/341 (10%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 +S ++A E L G +A PTETVYGL D+ + TA RR+YE K RP+ NPLI H+++I Sbjct: 14 NSEDFKEAVELLKEGQLVAFPTETVYGLGGDALDKTAARRIYEAKGRPSDNPLIVHIANI 73 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCG-FT 124 +K+ A V + LA FWPGPLT++ L +D+ PL +T L T R+P Sbjct: 74 EALKELAVEVPEEAYRLADDFWPGPLTMI---LKKSDLVPLETTGGLDTVAIRMPSDEIA 130 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSS-SICKEIPLIIDGGISKIGLESTIVNV 183 ++LI+ G LA PSAN+SG+ S T +H++ C + +IIDGG S IGLESTIV++ Sbjct: 131 RRLIKESGLYLAAPSANKSGRPSTTKAEHVIEDLDGC--VSMIIDGGSSTIGLESTIVDL 188 Query: 184 QCEKKVRILRPGGLEIETLKRAI-SVELEYCV--DETSTP---QSPGMLKSHYAPRSQVR 237 + V ILRPG + E L + I E + V E S P ++PGM HYAP+ Q+ Sbjct: 189 TGDNPV-ILRPGFITREMLNQCIGGTEYDKAVLKKEKSDPVVAKAPGMKYRHYAPKGQLT 247 Query: 238 ---------LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKE---------AA 279 ++AI+ ++ +V I E + NL G +K A Sbjct: 248 IYEGDTNQVIKAINEAAKQKTEEGFHVGILATEE---TKNLYSYGDVKSIGTRKNEETIA 304 Query: 280 FNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 +LF ++ D S A+ I S ++ LG AI NRL +AA Sbjct: 305 AHLFECLREFDTSNAAYIFSESFEDNYLGQAIMNRLLKAAG 345 >gi|291294802|ref|YP_003506200.1| Sua5/YciO/YrdC/YwlC family protein [Meiothermus ruber DSM 1279] gi|290469761|gb|ADD27180.1| Sua5/YciO/YrdC/YwlC family protein [Meiothermus ruber DSM 1279] Length = 316 Score = 172 bits (436), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 116/312 (37%), Positives = 169/312 (54%), Gaps = 9/312 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +A + + +G +A PTETVYGL ++ + A R++E K+RP+ +PLI HV+D M++ Sbjct: 10 LERAAQIIRSGGLVAFPTETVYGLGANALDARAAARIFEAKQRPSFDPLIVHVADRGMLQ 69 Query: 72 KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIE 129 K P L+ L + FWPGPLTLVL + + L T+ L T R+P ++LI Sbjct: 70 KVVQEVPALAERLMERFWPGPLTLVLP--RSERVPGLVTSGLPTVAVRMPAHPVAQELIR 127 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PLA PSAN G +S T +H+ + + LI+DGG ++ G+ESTIV + +K Sbjct: 128 RAGLPLAAPSANPFGYLSPTRAEHV-ERMLGGRVDLILDGGRTEFGVESTIVLLA--EKP 184 Query: 190 RILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREAL 249 +LR G + +E L+R + LE V P PG L HYAP + +R+ P Sbjct: 185 TVLRYGAVAVEELERVLG-RLELQVGAREKPLVPGQLPQHYAPHTPIRIAPPSEIPLGLR 243 Query: 250 IRFGNVPIKNIENAIISLN-LSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLG 308 R G + + + + LS TG L EAA +LF + D G +I IP GLG Sbjct: 244 KRVGYLAFQEVPKGFKVVKVLSPTGSLLEAAAHLFEALHQLDRLGLEAIYAEPIPEVGLG 303 Query: 309 IAINNRLERAAA 320 AI +RL RA++ Sbjct: 304 RAIMDRLRRASS 315 >gi|332663181|ref|YP_004445969.1| Sua5/YciO/YrdC/YwlC family protein [Haliscomenobacter hydrossis DSM 1100] gi|332331995|gb|AEE49096.1| Sua5/YciO/YrdC/YwlC family protein [Haliscomenobacter hydrossis DSM 1100] Length = 317 Score = 172 bits (435), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 118/313 (37%), Positives = 169/313 (53%), Gaps = 11/313 (3%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 +A E L G IAIPTETVYGLA ++ + + + +++ IK+RP+ +PLI HV D+ ++ Sbjct: 8 QAAELLKRGEVIAIPTETVYGLAGNALDESTVAKIFAIKQRPSFDPLIVHVPDLQSLENW 67 Query: 74 ASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY 131 P + LA+ F PG LTL+L+ T I L TA R+P ++L+ Sbjct: 68 VQNIPTAARQLAQHFMPGALTLLLEKKET--ISDLVTAGSPLVAMRIPAHPLAQELLRLL 125 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 PLA PSAN G IS T +H+ + + +IP I+DGG IGLESTIV E + I Sbjct: 126 PFPLAAPSANPFGYISPTRAEHV-AHQLGDQIPYILDGGPCTIGLESTIVGF-PEGRATI 183 Query: 192 LRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL-RAIHVNPREALI 250 R GG+ +E ++ I ++ +S PQ+PGMLKSHYAPR + L + + P+ Sbjct: 184 FRKGGIPVEAIEAVIG-PVQVQAHSSSNPQAPGMLKSHYAPRIPLVLGKLTELIPQHQGK 242 Query: 251 RFGNVPIKNIENAIIS---LNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307 G + + I S LS +G EAA NLF+ M+ D I +P L Sbjct: 243 AIGVLSFQERYPEIPSERQFALSSSGDYTEAARNLFSAMRYLDQLPLDLIVAELLPEENL 302 Query: 308 GIAINNRLERAAA 320 G AIN+RL RA++ Sbjct: 303 GRAINDRLRRASS 315 >gi|83815217|ref|YP_445718.1| SUA5 protein [Salinibacter ruber DSM 13855] gi|83756611|gb|ABC44724.1| SUA5 protein [Salinibacter ruber DSM 13855] Length = 330 Score = 172 bits (435), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 112/323 (34%), Positives = 178/323 (55%), Gaps = 15/323 (4%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 ++ T + + +A + L G +A PTETVYGL D+ P A+RR++E K RPA NPLI H Sbjct: 16 VATTRTTSPTEAADRLRRGELVAFPTETVYGLGADAFQPDAVRRIFEAKGRPADNPLIVH 75 Query: 64 VSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 + + + A+ P ++ HL F PGPLTL+L D+ + TA L+T RVP Sbjct: 76 LRRRDQIGQVAARVPSVAQHLLDAFAPGPLTLILP--KHEDLPSVVTAGLETVGVRVPRL 133 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 T+ +E P+ PSANRSG+ S T+ + + + I I+ GG + G+EST+V Sbjct: 134 PLTQSFLEACDTPVPAPSANRSGRPSPTSWEAV-EHDLAGRIDCILQGGRTDAGVESTVV 192 Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241 + + +LRPG + +E+L+RA+ D P+SPG HYAP +QVRL Sbjct: 193 DCTTDPAT-VLRPGAVSVESLRRALGAVQVPSSDADEAPRSPGTRHRHYAPSAQVRLVE- 250 Query: 242 HVNPREALI----RFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297 +P EA+ + + + +A+ ++ + ++ +K A +LF+ + D++ I Sbjct: 251 --DPSEAVSGDRHAYVGLDVPPHPDALGAVYVEES--VKAYAHDLFHIFRTCDENEVEVI 306 Query: 298 AFSSIPNHGLGIAINNRLERAAA 320 ++P +GLG A+N+RL RAAA Sbjct: 307 YAQTVPPNGLGRALNDRLRRAAA 329 >gi|148269220|ref|YP_001243680.1| Sua5/YciO/YrdC/YwlC family protein [Thermotoga petrophila RKU-1] gi|147734764|gb|ABQ46104.1| translation factor SUA5 [Thermotoga petrophila RKU-1] Length = 335 Score = 172 bits (435), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 120/324 (37%), Positives = 168/324 (51%), Gaps = 18/324 (5%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L++A E L G I PTETVYG+ D+ N A R+++E+K RP NPLI H+ Sbjct: 13 DEEVLKEAVELLRNGEVIIFPTETVYGIGADAYNEEACRKIFELKGRPTDNPLIVHIHSF 72 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 +++ A L K FWPGPLT++L S I + TA L T R+P K Sbjct: 73 DQLEEIAEGYEAHLDFLKKFWPGPLTVILRKKSEK-IPLVVTAGLSTVAVRMPAHPVALK 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LIE +G+P+A PSAN SG+ S TNV+H++ + K + LIID G + GLESTIV++ E Sbjct: 132 LIELFGNPIAAPSANLSGRPSATNVQHVIEDFMGK-VKLIIDAGNTPFGLESTIVDLTKE 190 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDE-------TSTPQSPGMLKSHYAPRSQVRLR 239 K V +LRPG +E+E L+ E V + P +PGM HYAP + L Sbjct: 191 KPV-LLRPGPVEVERLRELFP---ELVVPDFVRKGNFKGRPLAPGMKYRHYAPSKPLILV 246 Query: 240 AIHVNPREALIRFGN-VPIKNIENAIISLNLSKTGKLKEA---AFNLFNYMKIADDSGAS 295 E L ++ N V I E + ++ G LK A N+F+ ++ A+ G Sbjct: 247 EDLTKMEEVLKKYPNHVVICVDERKELYDDIIVVGSLKNPYSIAQNIFSVLREAEKRGKE 306 Query: 296 SIAFSSIPNHGLGIAINNRLERAA 319 I G+ A+ NRL +AA Sbjct: 307 YIIVEGFEERGILFAVMNRLRKAA 330 >gi|325679591|ref|ZP_08159166.1| Sua5/YciO/YrdC/YwlC family protein [Ruminococcus albus 8] gi|324108621|gb|EGC02862.1| Sua5/YciO/YrdC/YwlC family protein [Ruminococcus albus 8] Length = 338 Score = 172 bits (435), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 115/336 (34%), Positives = 183/336 (54%), Gaps = 30/336 (8%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 + N+++KA + + G + +PTETVYGLA ++ N A+R+++ K RPA NPLI HVS Sbjct: 9 SSENSIKKASDLIRTGEVVGMPTETVYGLAANAFNENAVRKIFAAKGRPADNPLIVHVSS 68 Query: 67 ISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA-NLKTACFRVPCGFT 124 + + P L+ A+LFWPGPLT++ + +D+ P+ T+ L T R+P T Sbjct: 69 FEEISPLVTEIPVLARKCAELFWPGPLTMI---MPKSDMIPMVTSGGLDTVGIRMPSNNT 125 Query: 125 -KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + I+ P+A PSAN SG S T H+L + + IP IIDGG +G+EST+++ Sbjct: 126 ARAFIKECSCPIAAPSANLSGSPSPTTASHVL-NDMKGRIPAIIDGGACGVGVESTVISF 184 Query: 184 QCEKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238 + + +R+LRPG + E L+ I + +DE + SPGM HYAP+++V + Sbjct: 185 EGD-GIRLLRPGFVSAEDLREVTENVLIDKGVLEMLDENARVSSPGMKYKHYAPKAEVSI 243 Query: 239 RA-----------IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMK 287 + + + L+ F +EN ++ L S +E A LF+ ++ Sbjct: 244 VCGNSGEFNGFCMKNASADDVLMVFDESDAAGLENRLLVLGKSD----EEQAQRLFDALR 299 Query: 288 IADDSGASSIAFSSIPNH-GLGIAINNRLERAAAPR 322 D+ GA + ++ PN G+G+A+ NRL RAAA R Sbjct: 300 ELDEMGAKKV-YARCPNKTGVGLAVYNRLLRAAAFR 334 >gi|251799799|ref|YP_003014530.1| Sua5/YciO/YrdC/YwlC family protein [Paenibacillus sp. JDR-2] gi|247547425|gb|ACT04444.1| Sua5/YciO/YrdC/YwlC family protein [Paenibacillus sp. JDR-2] Length = 356 Score = 172 bits (435), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 117/333 (35%), Positives = 174/333 (52%), Gaps = 28/333 (8%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +A L G +A PTETVYGL D+RN TA+ +++ K RP+ NPLI H++D + + Sbjct: 22 LEEAASLLRDGELVAFPTETVYGLGADARNTTAVEGIFKAKGRPSDNPLIVHIADENQLA 81 Query: 72 KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-KLIE 129 + P L+ L K WPGPLT+VL + T + PL TA L T R+P LI Sbjct: 82 ELVLPYPELAGRLMKELWPGPLTIVLP-VRTGAVSPLVTAGLTTVGIRMPDHPAALALIR 140 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G P+A PSANRSG+ S T H+L + +I I+DGG + +GLEST++ + + Sbjct: 141 QSGCPVAAPSANRSGRPSPTLAAHVL-EDLAGKISGIVDGGATGVGLESTVIELPDSNTI 199 Query: 190 RILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244 RILRPGG+ E L+ A I D T P+SPGM +HYAP +R+ + Sbjct: 200 RILRPGGITAEQLRSAAPEAVIDAPAAANPDVTEAPRSPGMKYAHYAPEGDLRI--VLGE 257 Query: 245 PREALI----RFGNVPIKNIENAIISLN-----------LSKTGKL--KEAAFNLFNYMK 287 P +A+ + +++ +++ + LS +L ++AA NL+ ++ Sbjct: 258 PAKAVSYIQEQLSLSTTTSMKTGVLTFDERAAAYDADLILSYGSELHPEQAAHNLYAALR 317 Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 D G I G+G+A+ NRL +AA Sbjct: 318 RFDSEGIQLIWAEGCSEEGIGLALMNRLAKAAG 350 >gi|294507611|ref|YP_003571669.1| SUA5 protein [Salinibacter ruber M8] gi|294343940|emb|CBH24718.1| SUA5 protein [Salinibacter ruber M8] Length = 412 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 112/323 (34%), Positives = 178/323 (55%), Gaps = 15/323 (4%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 ++ T + + +A + L G +A PTETVYGL D+ P A+RR++E K RPA NPLI H Sbjct: 98 VATTRTTSPTEAADRLRRGELVAFPTETVYGLGADAFQPDAVRRIFEAKGRPADNPLIVH 157 Query: 64 VSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 + + + A+ P ++ HL F PGPLTL+L D+ + TA L+T RVP Sbjct: 158 LRRRDQIGQVAARVPSVAQHLLDAFAPGPLTLILP--KHEDLPSVVTAGLETVGVRVPRL 215 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 T+ +E P+ PSANRSG+ S T+ + + + I I+ GG + G+EST+V Sbjct: 216 PLTQSFLEACDTPVPAPSANRSGRPSPTSWEAV-EHDLAGRIDCILQGGRTDAGVESTVV 274 Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241 + + +LRPG + +E+L+RA+ D P+SPG HYAP +QVRL Sbjct: 275 DCTTDPAT-VLRPGAVSVESLRRALGAVQVPSSDADEAPRSPGTRHRHYAPSAQVRLVE- 332 Query: 242 HVNPREALI----RFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297 +P EA+ + + + +A+ ++ + ++ +K A +LF+ + D++ I Sbjct: 333 --DPSEAVSGDRHAYVGLDVPPHPDALGAVYVEES--VKAYAHDLFHIFRTCDENEVEVI 388 Query: 298 AFSSIPNHGLGIAINNRLERAAA 320 ++P +GLG A+N+RL RAAA Sbjct: 389 YAQTVPPNGLGRALNDRLRRAAA 411 >gi|242399386|ref|YP_002994810.1| Sua5 superfamily-related protein [Thermococcus sibiricus MM 739] gi|242265779|gb|ACS90461.1| Sua5 superfamily-related protein [Thermococcus sibiricus MM 739] Length = 341 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 118/334 (35%), Positives = 175/334 (52%), Gaps = 25/334 (7%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 D ++ A F+ +A PTETVYGL D+ N A+R++++ K RP NPLI H+++ Sbjct: 11 VDWKKIKVAARFIKESKLVAFPTETVYGLGADALNEDAVRKIFQAKGRPPDNPLIIHIAN 70 Query: 67 ISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFT 124 + + A P + LA+ FWPGPLTLVL ++ ++T L+T R+P Sbjct: 71 FEQIYELAREVPETAKILAQRFWPGPLTLVLP--KKDEVPYVTTGGLETVAIRMPDHEIA 128 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 LI++ P+A PSAN SG+ S T +H++ K I IIDGG +KIG+EST+V++ Sbjct: 129 LALIQSSDRPIAAPSANISGKPSPTLAEHVVDDFYGK-IECIIDGGETKIGVESTVVDLT 187 Query: 185 CEKKVRILRPGGLEIETLKRAIS-VELEYCVDET--STPQSPGMLKSHYAPRSQVRLRAI 241 + +LRPGGL +E +K+ I V + V ++PGM HYAP +QV + Sbjct: 188 THPPM-LLRPGGLPLEEIKKVIGKVNVHPAVKGKPIKLAKAPGMKYKHYAPEAQV---IV 243 Query: 242 HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEA-------------AFNLFNYMKI 288 RE + + IK + I + + TG EA A NLF ++ Sbjct: 244 IEGEREQVTKKIKELIKEYKKQKIRVGVMATGDFYEADAYFNIGENEEEIARNLFKALRE 303 Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 D SG + I I GLG+A+ NRL++AA R Sbjct: 304 LDKSGVNVILAEGIEERGLGLAVMNRLKKAAGYR 337 >gi|212224235|ref|YP_002307471.1| Hypothetical translation factor [Thermococcus onnurineus NA1] gi|212009192|gb|ACJ16574.1| Hypothetical translation factor [Thermococcus onnurineus NA1] Length = 339 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 119/332 (35%), Positives = 172/332 (51%), Gaps = 25/332 (7%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D ++ A +F+ G +A PTETVYGL D+ N A RR++E K RPA NPLI H++D Sbjct: 12 DGRKIKIAAKFILEGKLVAFPTETVYGLGADALNEEAARRIFEAKGRPADNPLIVHIADF 71 Query: 68 SMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126 +KK A P LA+ FWPGPLT+VL ++ ++T L T R+P Sbjct: 72 DDLKKLAREIPDEARLLAEKFWPGPLTVVLP--KKEEVPTVTTGGLDTVAVRMPAHPIAL 129 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 + P+A PSAN SG+ S T +H++ K I IIDGG +KIG+EST+V++ E Sbjct: 130 ALIRASTPIAAPSANISGKPSPTLAEHVIDDFYGK-IECIIDGGETKIGVESTVVDLSGE 188 Query: 187 KKVRILRPGGLEIETLKRAIS-VELEYCVDE--TSTPQSPGMLKSHYAPRSQV------- 236 K +LRPGGL +E +++ I VE+ V +SPGM HY+P +QV Sbjct: 189 KPT-LLRPGGLPLEEIEKVIGEVEIHPAVRGKLVDVARSPGMKYKHYSPNAQVIVVEGPR 247 Query: 237 -----RLRAIHVNPREALIRFGNVPIKNIE-NAIISLNLSKTGKLKEAAFNLFNYMKIAD 290 ++ + R+ +R G + + + + L S+ +E A NLF ++ D Sbjct: 248 ENVRKKIEELVKEYRKKGLRVGVMATEQYDADEFFHLGTSE----EEVARNLFKALRELD 303 Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 I I GLG A+ NRL +AA R Sbjct: 304 KRRVDIIIAEGIEERGLGFAVMNRLRKAAGYR 335 >gi|325291370|ref|YP_004267551.1| translation factor SUA5 [Syntrophobotulus glycolicus DSM 8271] gi|324966771|gb|ADY57550.1| translation factor SUA5 [Syntrophobotulus glycolicus DSM 8271] Length = 368 Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 122/348 (35%), Positives = 178/348 (51%), Gaps = 31/348 (8%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 Q ++ N L++A + + AG +A PTETVYGL D+ NP A ++++K RPA NPLI Sbjct: 19 QEQWLSLENELKEAAQLIKAGNLVAFPTETVYGLGADALNPRACAEIFKVKGRPADNPLI 78 Query: 62 CHVSDISMVKKHASVDPLSLHL-AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 HV+D+ ++ S + A FWPGPLT+VL I + + LKT FR+P Sbjct: 79 LHVADLEEARRLTSFWNDKAEICAGAFWPGPLTMVLP--KAEFIPDVISGGLKTVAFRMP 136 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 LI G PLA PSAN SG+ S T+ +H+ + IPL+ID G IGLEST Sbjct: 137 DHPVALSLIRLSGCPLAAPSANLSGKPSPTDGEHVW-QDLQGRIPLMIDAGKCAIGLEST 195 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCVDETST----PQSPGMLKSHYAPRS 234 ++++ E V ILRPGG+ E L+ + VE++ + E +T P++PGM HYAP Sbjct: 196 VLDLSEEIPV-ILRPGGITREQLEEVLGKVEVDPFLTEMNTENIVPKAPGMKYRHYAPEG 254 Query: 235 QVRLRA-----IHVNPREALIRFGNVPIKN---IENAIISLNLSKTGKLK---------- 276 +V L + + RE L + P K + L + KL+ Sbjct: 255 EVHLLSGDGSEVLQEIREGLAEYAATPKKALLCLRETEEMLQDEEKKKLELIFVMGARTN 314 Query: 277 --EAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 +AA L+ +++ D I +P G+G+A NRL +AA R Sbjct: 315 PGKAARRLYEGLRLCDRQNMEMIFVEGMPAEGIGLAFMNRLRKAAGKR 362 >gi|315649887|ref|ZP_07902969.1| Sua5/YciO/YrdC/YwlC family protein [Paenibacillus vortex V453] gi|315274686|gb|EFU38068.1| Sua5/YciO/YrdC/YwlC family protein [Paenibacillus vortex V453] Length = 385 Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 120/336 (35%), Positives = 175/336 (52%), Gaps = 31/336 (9%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++A L G +A PTETVYGL D+ N A+ R++ K RPA NPLI H+S+++ ++ Sbjct: 47 LQEAGLVLAQGGTVAFPTETVYGLGADAGNTEAVERIFAAKGRPADNPLIVHISELAQLE 106 Query: 72 ---KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 +H V+ L FWPGPL+LVL + + P TA L T R+P L Sbjct: 107 GLVQH--VNETERALMDSFWPGPLSLVLPVKRDA-VSPRVTAGLDTVAVRMPDHSVALAL 163 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I G PLA PSANRSG+ S T H+L + + I ++DGG + +G+EST+V V + Sbjct: 164 ISAAGRPLAAPSANRSGRPSPTLASHVL-ADLAGYIDGVLDGGPAGVGVESTVVQVGEDG 222 Query: 188 KVRILRPGGLEIETLKR-AISVELEYCVD------ETSTPQSPGMLKSHYAPRSQVRL-- 238 V +LRPGG+ E L A SV L+ + E P+SPGM +HYAP+ + + Sbjct: 223 AVTVLRPGGVTAEQLAAVAASVRLDPALQRAAGEAEGPAPRSPGMKYTHYAPKGAMCVVQ 282 Query: 239 --RAIHVNPREALIRFGNVPIKNIEN------------AIISLNLSKTGKLKEAAFNLFN 284 RA V+ R A + A ++++L +EAA L+ Sbjct: 283 GPRADAVSARIAAELEAAARRGEVTGVLSFDEHIGHYRADVAVSLGSLAAPEEAARRLYA 342 Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ DD GA+ I + P+ G+G A+ NRL +AA Sbjct: 343 GLRHFDDEGATFILAEACPDRGVGAAVMNRLLKAAG 378 >gi|296109437|ref|YP_003616386.1| Sua5/YciO/YrdC/YwlC family protein [Methanocaldococcus infernus ME] gi|295434251|gb|ADG13422.1| Sua5/YciO/YrdC/YwlC family protein [Methanocaldococcus infernus ME] Length = 313 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 113/329 (34%), Positives = 180/329 (54%), Gaps = 33/329 (10%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 I+ T+ N ++KA E + G +A PTETVYGL D+ N A+ +++E+K+RP ++P+I Sbjct: 2 ILKATEEN-IKKAAEVIRKGGLVAFPTETVYGLGADALNKEAVAKIFEVKQRPLIDPVIV 60 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPC 121 H+S ++K A L+ LAK FWPGPLT+V L ++ P + TA L R+P Sbjct: 61 HISKFEDLEKLAYPTELAYKLAKAFWPGPLTMV---LPKKEVVPSIVTAGLDFVAIRMPA 117 Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 KLIE +A PSAN ++S T +H+ + ++ +I+DGG +G+ESTI Sbjct: 118 HPVALKLIEESKTFIAAPSANLFSKLSPTRAEHVY-EQLGDKVDIILDGGKCDVGVESTI 176 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 +++ E ILR GGL++E +++ I E++ E ++PGMLK HY+P + ++ Sbjct: 177 IDLTTEPPT-ILRLGGLDVEAIEKVIG-EVK-ITKENKKIKAPGMLKKHYSPTTPLK--- 230 Query: 241 IHVNPREALIRFGNVPIKNIENAIISLN-----------LSKTGKLKEAAFNLFNYMKIA 289 I P+ PI N+ +++ LS+ G L+EAA NL++ + Sbjct: 231 IMKEPK---------PIPNLRCGLLAFKEPREGFEVVEILSRKGDLREAAANLYDSLHRL 281 Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERA 318 D I ++P GLG AI +RL +A Sbjct: 282 DKQNLDIIIAEAVPEVGLGRAIMDRLRKA 310 >gi|225164315|ref|ZP_03726583.1| SUA5/YciO/YrdC/YwlC family protein [Opitutaceae bacterium TAV2] gi|224801077|gb|EEG19405.1| SUA5/YciO/YrdC/YwlC family protein [Opitutaceae bacterium TAV2] Length = 373 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 126/347 (36%), Positives = 183/347 (52%), Gaps = 33/347 (9%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +I T +N LR+ L G +A+P+ETVYGLA D+ N A ++ K+RP +PLI Sbjct: 34 RIYRPTPAN-LRRLASALARGDLVAVPSETVYGLAADALNVAACEAIFAAKRRPHHDPLI 92 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 H++ + + + A P +L LAK FWPGPLTLVL + L TA L + R+P Sbjct: 93 VHIASLRQLHEIAMPSPEALLLAKAFWPGPLTLVLP--KRPHVPDLVTAGLPSVAVRMPA 150 Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 +K+I LA PSAN G +S T +H+ ++ I I+DGG K+G+ESTI Sbjct: 151 HPLFQKIIRLSQRALAAPSANPFGYVSPTTAQHV-KDNLQNRIKHILDGGPCKVGVESTI 209 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAIS--VELEYCV------------DETSTPQSPGML 226 ++++ +LR GGL +E ++R + V L + V T +PGML Sbjct: 210 IDLREPLHPVLLRAGGLPVEEIQRVLQRPVSLAHHVPPSPPPPLSLRSHATQGQTAPGML 269 Query: 227 KSHYAPRSQVRLRA-------IHVNPREALIRFGNVPIKNIENAIIS--LNLSKTGKLKE 277 HY+PR+ V L ++ P EAL+ P KN+ + +I LSKTG L E Sbjct: 270 DHHYSPRTPVALLTNLTPDFIKNLPPDEALLCLQ--PPKNLRHRMIHNLFYLSKTGDLNE 327 Query: 278 AAFNLFNYMKIADDSGASSIAFSSIPNH--GLGIAINNRLERAAAPR 322 AA LF+ +++ D+ G I + +P GL AI +RL RAAA R Sbjct: 328 AARQLFDRLRMLDNGGWKKI-HAELPGQKKGLAPAIRDRLTRAAAKR 373 >gi|124009997|ref|ZP_01694660.1| translation factor SUA5 [Microscilla marina ATCC 23134] gi|123983955|gb|EAY24343.1| translation factor SUA5 [Microscilla marina ATCC 23134] Length = 320 Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 117/315 (37%), Positives = 172/315 (54%), Gaps = 13/315 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +A L G +AIPTETVYGLA ++ + A+ R++E K RP +PLI H I V+ Sbjct: 9 LTQASILLTQGKLVAIPTETVYGLAANAFDKKAVTRIFEAKNRPTFDPLIVHTHSIEQVQ 68 Query: 72 KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCG-FTKKLI 128 + P + LAK FWPG LT+ LL D+ P L TA L T R+P T +L+ Sbjct: 69 QFTKNIPEKAKKLAKQFWPGSLTI---LLEKNDLIPDLVTAGLSTVAVRIPNHPLTLELL 125 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 + PLA PSAN G IS T H+ + + ++ IIDGG ++G+ESTIV V+ + Sbjct: 126 KQLDFPLAAPSANPFGYISPTTAGHV-EAQLKNKVSYIIDGGPCQVGIESTIVEVK-NNQ 183 Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI-HVNPRE 247 I R GG+ +E ++ A ++E +S P++ GMLKSHYAP+ ++ + I + P+ Sbjct: 184 TTIYRLGGISVENIEAATG-KVEEVRHSSSNPKASGMLKSHYAPQKKMIIGDIAALLPQY 242 Query: 248 ALIRFGNVPIKNIENAI---ISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPN 304 + G + + + + LS G+L +AA LF M+ D+ I +P Sbjct: 243 PCDKVGILSFRKTYEQVPKNQQVVLSAEGELAKAAQGLFAGMRYLDNQPVEIILAELMPE 302 Query: 305 HGLGIAINNRLERAA 319 GLG AIN+R+ RAA Sbjct: 303 KGLGRAINDRIRRAA 317 >gi|302532178|ref|ZP_07284520.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces sp. C] gi|302441073|gb|EFL12889.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces sp. C] Length = 324 Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 117/330 (35%), Positives = 170/330 (51%), Gaps = 24/330 (7%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 T + + A L AG +A+PTETVYGL D+ N A+ R++E+K RP+ +PLI H+ Sbjct: 3 TRTTDIAAAAGVLRAGGLVALPTETVYGLGADAENADAVNRIFEVKGRPSSHPLIVHIGG 62 Query: 67 ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 + V P + LA+ FWPGPLTLVL + +T L+T RVP Sbjct: 63 AEQLDDWVEEVSPTARLLAERFWPGPLTLVLRRGRRVPLE--ATGGLETVAVRVPDHPVA 120 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 +L+ +G + PSANR G +S T H+ + + + + L++DGG ++G+ESTIV+V Sbjct: 121 LELLAAFGGGVTAPSANRFGSVSPTTADHV-GAELGEAVDLVLDGGPCQVGVESTIVDVT 179 Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244 + ILRPGG+ E L+ + L V TS + PG SHYAPR++V L V Sbjct: 180 GDVP-SILRPGGVTREDLEAVLGFPL--AVPSTSQVRVPGQHPSHYAPRARVVL----VE 232 Query: 245 P----------REALIRFGNVPIKNIENAIISLN--LSKTGKLKEAAFNLFNYMKIADDS 292 P +E R G + + + A + + + G A L+ +++ DD Sbjct: 233 PETVVAEAERAQEQGHRVGLLLPRPFDGADVKAHAVVEVPGSPAAYARGLYGFLRELDDR 292 Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAAPR 322 G I S GLG+AI NRL RAA PR Sbjct: 293 GCDLIVASLPAEEGLGLAIANRLRRAAGPR 322 >gi|126664215|ref|ZP_01735207.1| translation factor, SUA5-family protein [Flavobacteria bacterium BAL38] gi|126623747|gb|EAZ94443.1| translation factor, SUA5-family protein [Flavobacteria bacterium BAL38] Length = 317 Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 115/321 (35%), Positives = 167/321 (52%), Gaps = 18/321 (5%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S L +A L+ I PTETVYGLA ++ + AI+++YE+KKRP+ NPLI H+ Sbjct: 3 STNLDQAVALLNKDQIIGFPTETVYGLAGNAFSDVAIKKIYEVKKRPSFNPLIVHIKSFD 62 Query: 69 MVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + A+ P H LA FWPGPLTL+L T I L TANL T R+P + Sbjct: 63 FLDTIATEIPEKAHLLANAFWPGPLTLLLKKQPT--ISNLVTANLDTVAVRIPNHPVALE 120 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+ PL PSAN +IS T +H+ + EI +++DGG G+ESTIV + Sbjct: 121 LLHQLDFPLVAPSANPFTRISPTKAEHV-AQYFENEIDMVLDGGTCTAGVESTIVGFES- 178 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL-RAIHV-- 243 KV + R G L +E +++ + + P++PGM HY+P+++ L R + Sbjct: 179 NKVIVYRLGALSLEAIEKVVG-PVTIINKNKKNPKAPGMFLKHYSPKTEFILTRNLQSEI 237 Query: 244 ----NPREALIRFGNV-PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIA 298 + + L+ F + P ++N + LSK L EAA NL+ + D I Sbjct: 238 DWFQDKKVGLLLFNTIQPNFELKNQFV---LSKDSNLNEAAANLYEALHELDKLNLDLII 294 Query: 299 FSSIPNHGLGIAINNRLERAA 319 P +GLGI IN+RLERA+ Sbjct: 295 AERFPEYGLGITINDRLERAS 315 >gi|167750774|ref|ZP_02422901.1| hypothetical protein EUBSIR_01752 [Eubacterium siraeum DSM 15702] gi|167656209|gb|EDS00339.1| hypothetical protein EUBSIR_01752 [Eubacterium siraeum DSM 15702] Length = 337 Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 122/325 (37%), Positives = 167/325 (51%), Gaps = 22/325 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +A E + G +AIPTETVYGLA D+ NP A ++++ K RP NPLI H+ D+ M+K Sbjct: 13 LCEAAELIKKGEVVAIPTETVYGLAADAYNPDACAKIFKAKGRPQDNPLIIHICDLDMLK 72 Query: 72 KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA-NLKTACFRVPCG-FTKKLI 128 + PL+L LA+ FW G LT++ DI P +T+ L T R+P T LI Sbjct: 73 NSVKEIPPLALTLAEHFWSGSLTMI---FPKKDIVPDTTSGGLDTVAVRMPDNEDTLNLI 129 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV-NVQCEK 187 + G PLA PSAN SG S T +H+ + + IPLIIDGG K G+EST++ Sbjct: 130 KMCGVPLAAPSANLSGSPSPTTAQHVY-ADMNGRIPLIIDGGECKNGVESTVICFTDGGT 188 Query: 188 KVRILRPGGLEIETLKRAISVELEYCV----DETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 +++LRPG + E L R E + V DE SPG+ HY+PR+ + + I Sbjct: 189 GIKVLRPGVITAEMLSRFAKTETDKNVFAKPDENEKVISPGVKYKHYSPRADITI--IET 246 Query: 244 NPREALIRFGNVP--------IKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 + E L F N I E I +S +E A NLF ++ D+ GA Sbjct: 247 DSDEKLAEFLNSKNDGGTYGVIFGSEKGIEVPTISYGSTAQEQAHNLFAVLRKTDELGAK 306 Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320 G+G A+ NRL RAAA Sbjct: 307 RAYVRCPEKTGVGTAVYNRLLRAAA 331 >gi|256003268|ref|ZP_05428260.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium thermocellum DSM 2360] gi|255992959|gb|EEU03049.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium thermocellum DSM 2360] gi|316939243|gb|ADU73277.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium thermocellum DSM 1313] Length = 351 Score = 170 bits (430), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 117/335 (34%), Positives = 179/335 (53%), Gaps = 26/335 (7%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D+ ++ A E L G +A PTETVYGL D+ + A+++++E K RP+ NPLI H++ Sbjct: 14 DNEKIKYAAEVLRGGGLVAFPTETVYGLGADALDENAVKKIFEAKGRPSDNPLIVHIAGK 73 Query: 68 SMVKK-HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 V A+V P + L FWPGPLTLVL+ + I + TA L T R P Sbjct: 74 EDVYGLAANVPPKAQILMDRFWPGPLTLVLE--KSDKIPSVITAGLSTVGLRAPSHPIAL 131 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LI G P+A PSAN SG+ S T KH++ + + +IIDGG + IG+EST+++V Sbjct: 132 ALIREAGIPIAAPSANLSGRPSPTVPKHVI-DDLYDRVDVIIDGGNANIGVESTVLDVTA 190 Query: 186 EKKVRILRPGGLEIETLKRAI-SVELEYCVDETS----TPQSPGMLKSHYAPRSQV---- 236 + V ILRPGG+ E LK + +V ++ + + P++PGM +HY+P++ V Sbjct: 191 DVPV-ILRPGGVSFEQLKDVLKNVAMDPSLMKKPAGDFVPKAPGMKYTHYSPKADVIVVE 249 Query: 237 ---RLRAIHVNPREALIRFGNVPI--------KNIENAIISLNLSKTGKLKEAAFNLFNY 285 A +N A + N+P+ K ++ S+ L + + A NLF Sbjct: 250 GEPEKVAEKINSLIAEYQSKNIPVGVLATEQTKEFYKSVPSITLGDRLEPETIAANLFKA 309 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + DD G I +I N G+G+A+ NR+++AA Sbjct: 310 FRDFDDIGIKVIFAEAIDNQGIGLAVMNRMKKAAG 344 >gi|125975078|ref|YP_001038988.1| translation factor SUA5 [Clostridium thermocellum ATCC 27405] gi|281418504|ref|ZP_06249523.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium thermocellum JW20] gi|125715303|gb|ABN53795.1| translation factor SUA5 [Clostridium thermocellum ATCC 27405] gi|281407588|gb|EFB37847.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium thermocellum JW20] Length = 351 Score = 169 bits (429), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 117/335 (34%), Positives = 179/335 (53%), Gaps = 26/335 (7%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D+ ++ A E L G +A PTETVYGL D+ + A+++++E K RP+ NPLI H++ Sbjct: 14 DNEKIKYAAEVLRGGGLVAFPTETVYGLGADALDENAVKKIFEAKGRPSDNPLIVHIAGK 73 Query: 68 SMVKK-HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 V A+V P + L FWPGPLTLVL+ + I + TA L T R P Sbjct: 74 EDVYGLAANVPPKAQILMDRFWPGPLTLVLE--KSDKIPSVITAGLSTVGLRAPSHPIAL 131 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LI G P+A PSAN SG+ S T KH++ + + +IIDGG + IG+EST+++V Sbjct: 132 ALIREAGIPIAAPSANLSGRPSPTVPKHVI-DDLYGRVDVIIDGGNANIGVESTVLDVTA 190 Query: 186 EKKVRILRPGGLEIETLKRAI-SVELEYCVDETS----TPQSPGMLKSHYAPRSQV---- 236 + V ILRPGG+ E LK + +V ++ + + P++PGM +HY+P++ V Sbjct: 191 DVPV-ILRPGGVSFEQLKDVLKNVTMDPSLMKKPAGDFVPKAPGMKYTHYSPKADVIVVE 249 Query: 237 ---RLRAIHVNPREALIRFGNVPI--------KNIENAIISLNLSKTGKLKEAAFNLFNY 285 A +N A + N+P+ K ++ S+ L + + A NLF Sbjct: 250 GEPEKVAEKINSLIAEYQSKNIPVGVLATEQTKEFYKSVPSITLGDRLEPETIAANLFKA 309 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + DD G I +I N G+G+A+ NR+++AA Sbjct: 310 FRDFDDIGIKVIFAEAIDNQGIGLAVMNRMKKAAG 344 >gi|289435803|ref|YP_003465675.1| Sua5/YciO/YrdC/YwlC family protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289172047|emb|CBH28593.1| Sua5/YciO/YrdC/YwlC family protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 345 Score = 169 bits (429), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 120/330 (36%), Positives = 183/330 (55%), Gaps = 19/330 (5%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 ++A E L G +A PTETVYGL D+ N AI+++YE K RP+ NPLI H++ + Sbjct: 19 QQAAELLRNGECVAFPTETVYGLGADATNQAAIQKIYEAKGRPSDNPLIVHIASRDQMDA 78 Query: 73 H-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 AS ++ L + FWPGPLT++L L + +S A L T R+P + LI+ Sbjct: 79 FVASYPQKAIKLMEKFWPGPLTVILPLKKDSLASNVS-AGLSTVGVRMPEHPVSLALIKE 137 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G P+A PSANRSG+ S T+ H++ + ++ IIDGG + +GLEST+++ E V Sbjct: 138 AGIPVAAPSANRSGKPSPTSASHVI-EDLDDKVAGIIDGGATGVGLESTVIDCSTEIPV- 195 Query: 191 ILRPGGLEIETLKRAI-SVEL-EYCVDETSTPQSPGMLKSHYAPRSQVRL----RAI--- 241 ILRPGG+ E +++ I SVEL ET P++PGM +HYAP++ V L +A Sbjct: 196 ILRPGGITKEQIEQVIGSVELANNDTKETEKPKAPGMKYTHYAPKAPVYLVEGSKAFWQK 255 Query: 242 HVNPREAL-IRFGNVPIKNIENAIISLNLSKTG----KLKEAAFNLFNYMKIADDSGASS 296 +N EA + G + K + + + + +++T ++E A L+ ++ D + Sbjct: 256 EINKVEAAHKKLGILATKELLDGLTTNAVTQTTGSIESMEEIANQLYKGLRAFDHAEVDI 315 Query: 297 IAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326 I P LG A+ NRLE+AA R S+ Sbjct: 316 IFAEVYPETELGAAVMNRLEKAAGNRRISE 345 >gi|239828601|ref|YP_002951225.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus sp. WCH70] gi|239808894|gb|ACS25959.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus sp. WCH70] Length = 348 Score = 169 bits (429), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 117/325 (36%), Positives = 178/325 (54%), Gaps = 20/325 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A + L +G +A PTETVYGL ++++ A+ +++ K RP+ NPLI H++ + ++ Sbjct: 21 VKEAAQLLKSGEVVAFPTETVYGLGANAKDAKAVEKIFAAKGRPSDNPLIVHIAHLKQLE 80 Query: 72 KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + S P H L K FWPGPLTLVL P+ TA L T R+P LIE Sbjct: 81 EMVSAIPDVAHTLIKRFWPGPLTLVLPKKEGVISDPV-TAGLPTVAVRMPAHPVALALIE 139 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PLA PSAN SG+ S T H+ + + I I+DGG + IG+EST+++ C KV Sbjct: 140 ASGLPLAAPSANISGRPSPTTAAHVF-ADLNGRIAGIVDGGETGIGVESTVLD--CTTKV 196 Query: 190 -RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPRSQVRL-------R 239 ILRPGG+ E L++ I +V ++ + DE TP+SPGM +HYAP+S + + Sbjct: 197 PTILRPGGVTKEALEKVIGNVFVDSALTDERQTPKSPGMKYTHYAPKSPMAIVQGSPAFL 256 Query: 240 AIHVNPREALIRFGNVPI----KNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 VN + L + V ++ +A + L L A +L++ ++ D++ Sbjct: 257 QTLVNKQRTLGKKVGVLTTEENRSFYDADVVLACGSRHDLHTVASHLYDTLRKFDETDVD 316 Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320 I S P G+G AI NRL++AA Sbjct: 317 FIYSESFPTEGIGEAIMNRLKKAAG 341 >gi|315641823|ref|ZP_07896827.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus italicus DSM 15952] gi|315482498|gb|EFU73037.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus italicus DSM 15952] Length = 346 Score = 169 bits (428), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 109/340 (32%), Positives = 182/340 (53%), Gaps = 27/340 (7%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+I I+ ++ +++A ++ G +A PTETVYGL + NP A++++Y++K RP+ NPL Sbjct: 1 MEIQKIS-TDEVKQAAHYIQQGELVAFPTETVYGLGASALNPQAVKKVYQVKGRPSDNPL 59 Query: 61 ICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I HV+ VK++ PL+ L + FWPGPLT++L + T + T L T FR+ Sbjct: 60 IVHVTSFEQVKEYIQESHPLAEVLVQTFWPGPLTIILPIKPNT-FDTVVTGGLATVAFRM 118 Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T +LI G PL PSAN SG S T +H++ I ++DGG +KIG+ES Sbjct: 119 PDQALTLELIRQAGVPLVGPSANLSGHPSPTTAEHVI-HDFEHSIKGVLDGGPTKIGVES 177 Query: 179 TIVNV-QCEKKVRILRPGGLEIETLKRA----ISVELEYCVDETSTPQSPGMLKSHYAPR 233 T++++ K ILRPG + E L++A ++V+ + + P++PGM HYAP Sbjct: 178 TVLDLSDPNKPPMILRPGAVTKEMLEQACHTPVAVD-SHLLRADEAPKAPGMKYKHYAPV 236 Query: 234 SQVRLRAIHVNPREALIRF------------GNVPIKNIENAIISLNLSKTGKLKEAAFN 281 V++ +H E + + G + + ++ + ++ A Sbjct: 237 VPVQM--VHEQEWEQVASYLAHHPIRAGILAGPTAAEVVRGEAAAVYMYADDSVQAATQG 294 Query: 282 LFNYMKIADDS--GASSIAFSSIPNHGLGIAINNRLERAA 319 LF+ ++ D++ G + ++ P GLG+A NRL++AA Sbjct: 295 LFSGLRALDETKAGLDCLYVATYPEDGLGVAYMNRLKKAA 334 >gi|81428744|ref|YP_395744.1| Sua5 family translation factor [Lactobacillus sakei subsp. sakei 23K] gi|78610386|emb|CAI55436.1| Putative translation factor, SUA5 family [Lactobacillus sakei subsp. sakei 23K] Length = 342 Score = 169 bits (428), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 115/337 (34%), Positives = 176/337 (52%), Gaps = 25/337 (7%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 N + +A L+AG ++ PTETVYGL D+ NP A++++Y K RP+ NPLI HV+ + Sbjct: 9 NQIEQAAAALNAGELVSFPTETVYGLGADATNPAAVKKVYAAKGRPSDNPLIVHVASVET 68 Query: 70 VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 V+ +A + +P L K FWPG LT++L L + T LKTA FR+P T L Sbjct: 69 VEHYAVTSNPAFGQLVKAFWPGSLTIILPLKHGA-FDAVVTGGLKTAAFRMPDNQVTLSL 127 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I+ G P+ PSAN SG+ S T H+L + +I +ID G + +GLEST++++ Sbjct: 128 IKAAGVPIVGPSANTSGKPSPTLADHVL-HDLTGKIAGVIDDGPTGVGLESTVIDLSVAT 186 Query: 188 KVRILRPGGLEIETLKRAIS--VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245 V ILRPG + E ++R I + ++ V TP++PGM HYAP +QV + A NP Sbjct: 187 PV-ILRPGVVTQEAIERVIGPIMTNKHKVGAAETPKAPGMKYKHYAPNAQVYIVA---NP 242 Query: 246 ----------REALIRFGNVPIKNIENAIISLNLSKTGKLKE----AAFNLFNYMKIAD- 290 + + FG + + I + L E A+ +LF ++ D Sbjct: 243 DDFDAAIDWASQQAVPFGVMAVDTILEKQAKVRFKDQFSLGESVVTASQHLFEGLRYFDL 302 Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQSQR 327 + I G+G+A NRLE++A + S++ Sbjct: 303 NPEVKLILVQGFAKEGVGLAYMNRLEKSAGQKYFSKQ 339 >gi|229826322|ref|ZP_04452391.1| hypothetical protein GCWU000182_01694 [Abiotrophia defectiva ATCC 49176] gi|229789192|gb|EEP25306.1| hypothetical protein GCWU000182_01694 [Abiotrophia defectiva ATCC 49176] Length = 349 Score = 169 bits (427), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 119/335 (35%), Positives = 172/335 (51%), Gaps = 33/335 (9%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 L KA E + G +A PTETVYGL + + A+ ++YE K RP+ NPLI H+S+ + Sbjct: 17 GLYKAAEIIKNGGLVAFPTETVYGLGANGLDENAVPKIYEAKGRPSDNPLILHISEFDEI 76 Query: 71 KKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCG-FTKKL 127 K P ++ LA FWPGPLT+V +DI P +T L++ R+P ++L Sbjct: 77 KNIVKEIPDVAFVLADEFWPGPLTMV---FKKSDIVPYRTTGGLESVAVRMPSNKIAREL 133 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I+ G P+A PSAN SG+ S T H+L + +I ++IDGG IGLESTIV+V E Sbjct: 134 IKIAGVPVAAPSANSSGRPSPTKADHVL-CDLDGKIDMVIDGGTVDIGLESTIVDVTGEV 192 Query: 188 KVRILRPGGLEIETLKRAIS-VELEYCV-----DETSTPQSPGMLKSHYAPRSQVRLRAI 241 V ILRPG + E L AI V+++ V D+ P++PGM HYAP+ ++ I Sbjct: 193 PV-ILRPGFITEEMLSEAIGRVDIDEAVKSLTLDKNLKPKAPGMKYRHYAPQGKM---TI 248 Query: 242 HVNPREALIRFGNVPIKNIEN----------------AIISLNLSKTGKLKEAAFNLFNY 285 + E +++ N E A I +++ + A NLF+ Sbjct: 249 YKGKPEKVVKIINEETAKSEGKKTAVLATDETKRYYKADIVISVGSREDCESIAHNLFDT 308 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ DD GA I LG AI NRL ++A Sbjct: 309 LRSFDDMGAEIIFSEGFDESRLGFAIMNRLHKSAG 343 >gi|227544506|ref|ZP_03974555.1| translation factor SUA5 [Lactobacillus reuteri CF48-3A] gi|300909306|ref|ZP_07126767.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus reuteri SD2112] gi|227185529|gb|EEI65600.1| translation factor SUA5 [Lactobacillus reuteri CF48-3A] gi|300893171|gb|EFK86530.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus reuteri SD2112] Length = 354 Score = 168 bits (426), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 111/323 (34%), Positives = 176/323 (54%), Gaps = 19/323 (5%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 +A + G +A PTETVYGL D+ N A++ +Y K RP+ NPLI HV+ I+MVKK+ Sbjct: 25 QAAAAIKRGELVAFPTETVYGLGADATNEKAVKNVYLAKGRPSDNPLIVHVNSIAMVKKY 84 Query: 74 ASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETY 131 A+ P + L FWPG LT++L + + T LKT FR P C T LIE Sbjct: 85 AAEIPDNARKLMDAFWPGSLTIILKIKKGA-LSKTVTGGLKTVAFRYPDCQPTLDLIEEA 143 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 G P+ PSAN SG+ S T +H+ + +I I+D G +++G+EST++++ + V I Sbjct: 144 GVPMVGPSANTSGKPSPTTAQHVY-HDLHGKISGIVDNGPTRVGVESTVLDMSTDHPV-I 201 Query: 192 LRPGGLEIETLKRAI-SVEL-EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREAL 249 LRPG + + +++ I S++L + V + TP++PGM HYAP++QV + N + + Sbjct: 202 LRPGAVTKKDIEKVIGSIDLNHHKVGKNETPKAPGMKYKHYAPKAQVYIVDEDTNWDKVV 261 Query: 250 IRFGNVPI--------KNIENAIISLN---LSKTGKLKEAAFNLFNYMKIADDS-GASSI 297 P K ++ ++ +N S +++A+ LF+ ++ DD +I Sbjct: 262 EWIRQQPFDVGMMAEEKVLQQEVLPMNAIQFSLGKNVQDASARLFDGLRQFDDQPNVKAI 321 Query: 298 AFSSIPNHGLGIAINNRLERAAA 320 + P H LG A NRL ++A Sbjct: 322 VTQAFPAHDLGGAYMNRLNKSAG 344 >gi|182413416|ref|YP_001818482.1| Sua5/YciO/YrdC/YwlC family protein [Opitutus terrae PB90-1] gi|177840630|gb|ACB74882.1| Sua5/YciO/YrdC/YwlC family protein [Opitutus terrae PB90-1] Length = 331 Score = 168 bits (426), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 115/322 (35%), Positives = 172/322 (53%), Gaps = 22/322 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L + L G +A+PTETVYGLA ++ + A R+++ K RPA +PLI H+ D + + Sbjct: 17 LARLARMLRDGELVAVPTETVYGLAANALDARACRKIFRAKGRPANDPLIVHIHDRAQLD 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 A + + LA+ FWPGPLT+VL S + + ++ L + R+P ++L+ Sbjct: 77 LLAETNSAAERLARAFWPGPLTMVLPRRSI--VPAVVSSGLPSVAVRMPAHPLFRQLLRR 134 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G P+A PSAN G IS T+ H+ + + + IP I+DGG IG+ESTIV+++ + + Sbjct: 135 AGMPVAAPSANPFGYISPTSAAHV-RAGLGRRIPAILDGGECPIGVESTIVDLRDPRHPQ 193 Query: 191 ILRPGGLEIETLKRAISVELEYCVDETS--TPQSPGMLKSHYAPR--SQV--RLRAIHVN 244 +LRPG + L+ + V + T+ P SPG+L HY+PR SQ+ R A V Sbjct: 194 LLRPGAVSRRELESVLGVRVRMPTRRTAPHAPISPGLLSRHYSPRTPSQLHERFSAREVG 253 Query: 245 PR---EALI---RFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIA 298 EA I R V +NI LS+ G L+EAA LF+ +++ D + Sbjct: 254 DSRVDEAWIFVARPAGVSGENI------FWLSERGSLREAARRLFHTLRLVDAQRFKRLH 307 Query: 299 FSSIPNHGLGIAINNRLERAAA 320 F GL AIN+RL RAA Sbjct: 308 FERARGGGLADAINDRLARAAG 329 >gi|288931240|ref|YP_003435300.1| Sua5/YciO/YrdC/YwlC family protein [Ferroglobus placidus DSM 10642] gi|288893488|gb|ADC65025.1| Sua5/YciO/YrdC/YwlC family protein [Ferroglobus placidus DSM 10642] Length = 334 Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 116/320 (36%), Positives = 170/320 (53%), Gaps = 28/320 (8%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A E + G +A PTETVYGL D+ N A+R+++E+K RPA NPLI HVS + + + A Sbjct: 23 AAEEIKKGNLVAFPTETVYGLGADALNEKAVRKIFEVKGRPADNPLIVHVSSVDQIYEIA 82 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGH 133 + ++ L F+PGPLTLV + + ++TA L T R+P KLIE Sbjct: 83 QPNEIAKKLIDAFFPGPLTLV---MKNKKVPKITTAGLDTVAVRMPDHKVALKLIELSET 139 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 P+A PSAN+SG+ S T +H+L + + +IIDGG +KIGLEST+V+ V ILR Sbjct: 140 PIAAPSANKSGKPSPTKAEHVL-EDLGNLVDVIIDGGETKIGLESTVVDTTV-YPVEILR 197 Query: 194 PGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL--------RAIHVNP 245 PG + E L+ + V+ ++ S +SPGM HYAP ++ + +A + Sbjct: 198 PGAITKEELEEYVDVK---YAEDFSVAKSPGMKYKHYAPDAETIVLVGKNFLKKATQI-- 252 Query: 246 REALIRFG---NVPIKNIE---NAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF 299 E ++ G V N+E N +I N + L+E A NLF ++ D I Sbjct: 253 AEDFVKKGYRVGVAGLNLEEKRNDVIYKNFGRN--LEEMAKNLFKVLRELDKE-CDVIIV 309 Query: 300 SSIPNHGLGIAINNRLERAA 319 + G+G AI NRL +A Sbjct: 310 QGVEEKGIGKAIMNRLYKAG 329 >gi|301299954|ref|ZP_07206181.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852436|gb|EFK80093.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus salivarius ACS-116-V-Col5a] Length = 336 Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 119/341 (34%), Positives = 180/341 (52%), Gaps = 32/341 (9%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I I + +A + L G +A PTETVYGL D+ N A++R+Y K RP+ NPL Sbjct: 1 MLITKIYKPSEFNEAAKELSLGELVAFPTETVYGLGADATNEQAVKRVYLAKGRPSDNPL 60 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 I VS + MVK+ V LS + K+ FWPG LT+VL + + + T LKTA F Sbjct: 61 IVTVSSLEMVKRF--VPSLSKDVEKIIEKFWPGSLTIVLKIKDGS-LSKTVTGGLKTAAF 117 Query: 118 RVPCGFTK-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P T LI G+P+ PSAN SG+ S T +H+ + I I+D G + +G+ Sbjct: 118 RMPKNETTLNLITALGNPIVGPSANSSGKPSPTTAQHVY-HDLEGRIAGILDDGPTDVGV 176 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPR 233 ESTI+++ E ILRPG + E +++ I E+ ++ V E P++PGM HYAP Sbjct: 177 ESTIIDMSTEIPT-ILRPGAVTAEEIEKVIGKEVYSDKHKVKENEIPKAPGMKYKHYAPS 235 Query: 234 SQVRLRAIHVNPREALIRFGN-------------VPIKNIENAIISLNLSKTGKLKEAAF 280 +QV + ++ + + +++ N V K +EN SL + ++ AA Sbjct: 236 AQVLI--VNKDNWNSALQWANENKNQVGILADDEVLSKALENKTYSLGEN----VESAAK 289 Query: 281 NLFNYMKIADDSGA-SSIAFSSIPNHGLGIAINNRLERAAA 320 NLF ++ DD I + P G+G+A NRL+++A Sbjct: 290 NLFAGLRYFDDDNQIKYILAEAFPEEGVGLAYMNRLKKSAG 330 >gi|261409693|ref|YP_003245934.1| Sua5/YciO/YrdC/YwlC family protein [Paenibacillus sp. Y412MC10] gi|261286156|gb|ACX68127.1| Sua5/YciO/YrdC/YwlC family protein [Paenibacillus sp. Y412MC10] Length = 365 Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 118/336 (35%), Positives = 172/336 (51%), Gaps = 27/336 (8%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 AL +A + L G +A PTETVYGL D+ N A+ R++ K RP+ NPLI H+S+++ Sbjct: 21 QALHEAGQVLAQGGTVAFPTETVYGLGADAGNTEAVERIFAAKGRPSDNPLIVHISELAQ 80 Query: 70 VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + V+ L FWPGPL+LVL + + P TA L T R+P L Sbjct: 81 LDGLVQQVNETERALMASFWPGPLSLVLPVKPGA-VSPRVTAGLDTVAVRMPDHRVALAL 139 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I G PLA PSANRSG+ S T H+L + I ++DGG + +G+EST+V V + Sbjct: 140 ISAAGCPLAAPSANRSGRPSPTLASHVL-EDLAGAIDGVLDGGPAGVGVESTVVQVGEDG 198 Query: 188 KVRILRPGGLEIETLKR-AISVELEYCVD------ETSTPQSPGMLKSHYAPRSQVRL-- 238 V +LRPGG+ E L A SV + + E+ P+SPGM +HYAP+ + + Sbjct: 199 AVTVLRPGGVTAEQLAAVAASVRQDPALQRAAGEAESPAPRSPGMKYTHYAPKGAMCVVQ 258 Query: 239 --RAIHVNPREALIRFGNVPIKNIEN------------AIISLNLSKTGKLKEAAFNLFN 284 RA V+ R A + A ++++L +EAA L+ Sbjct: 259 GPRADTVSARIAAELEAAARRGEVTGVLSFDEHIGHYAADVAVSLGSLAAPEEAARRLYA 318 Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ D+ GA+ I + P+ GLG A+ NRL +AA Sbjct: 319 GLRRFDEEGATFILAEACPDQGLGAAVMNRLLKAAG 354 >gi|51891213|ref|YP_073904.1| putative translation factor [Symbiobacterium thermophilum IAM 14863] gi|51854902|dbj|BAD39060.1| putative translation factor [Symbiobacterium thermophilum IAM 14863] Length = 349 Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 117/329 (35%), Positives = 171/329 (51%), Gaps = 24/329 (7%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 +A L AG +A PTETVYGL ++ + A+ R++ K RP+ NPLI H++D + ++ Sbjct: 21 QAAAILRAGDVVAFPTETVYGLGANALSSEAVARIFAAKGRPSDNPLIVHIADTAQLEGL 80 Query: 74 A-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETY 131 SV P + L + WPGPLTLV+ + P TA L T R+P LI Sbjct: 81 VESVPPTAERLMERCWPGPLTLVMR--KGPAVPPEVTAGLDTVGIRMPDHPVALALIRAA 138 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 G P+A PSAN SG+ S T +H+L + IP ++DGG + +G+EST++++ + + I Sbjct: 139 GVPIAAPSANASGRPSPTTAEHVL-EDLAGSIPAVLDGGETGVGVESTVLDMTTDPPM-I 196 Query: 192 LRPGGLEIETLKRAIS-VELEYCVDETST--PQSPGMLKSHYAPRS------------QV 236 LRPGGL E L+ AI V L V+ + P+SPGM HYAP++ Q Sbjct: 197 LRPGGLPREELEAAIGPVVLAPGVEGGTVERPRSPGMKYRHYAPQAPLILVEGPVLEMQE 256 Query: 237 RLRAIHVNPREALIRFG---NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293 ++R + + E R G + + + A + L G L A +LF ++ D Sbjct: 257 KIRDLAMEYAEEGKRVGILCSAESRGVYVAPVILEYGARGDLAGIASDLFGTLRAFDRHQ 316 Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAAPR 322 I +P GLG+AI NRL RAA R Sbjct: 317 VDVILAEGVPEEGLGLAIMNRLRRAAGGR 345 >gi|256848017|ref|ZP_05553461.1| translation factor SUA5 [Lactobacillus coleohominis 101-4-CHN] gi|256715077|gb|EEU30054.1| translation factor SUA5 [Lactobacillus coleohominis 101-4-CHN] Length = 342 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 115/342 (33%), Positives = 187/342 (54%), Gaps = 35/342 (10%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I + + + +A + L +G +A PTETVYGL D+ N A++++Y+ K RP+ NPLI HV+ Sbjct: 5 IYNLDQIGEAAQALRSGQLVAFPTETVYGLGADATNEEAVKKVYQAKGRPSDNPLIVHVA 64 Query: 66 DISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123 ++MV+K+A+ P + L FWPG LT++L + + + T L T FR P C Sbjct: 65 SVAMVEKYAAEIPEKARQLMTAFWPGSLTIILKIKPGS-LSKTVTGGLSTVAFRFPKCQP 123 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 T LIE G P+ PSAN SG+ S T +H+ + +I I+D G +K+G+EST++++ Sbjct: 124 TLDLIEQAGVPMVGPSANTSGKPSPTTAQHVY-HDLHGKIYGILDDGPTKVGVESTVLDM 182 Query: 184 QCEKKVRILRPGGLEIETLKRAI-SVEL-EYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241 + V ILRPG + ++ I S++L + V + P++PGM HYAP +QV + Sbjct: 183 STDHPV-ILRPGAVTKADIEGVIGSIDLNHHHVGKGEIPKAPGMKYKHYAPNAQVYI--- 238 Query: 242 HVNPREALIRFGNVPIKNIENA------------IISLNLSKTGK-------LKEAAFNL 282 V+P E + NV +K +E + L L K + + +A+ L Sbjct: 239 -VDPEE---DWANV-MKWVEQQPFAVGVMAEDVILKQLTLPKNAQAFSLGNGVTDASARL 293 Query: 283 FNYMKIADDS-GASSIAFSSIPNHGLGIAINNRLERAAAPRN 323 F+ +++ DD +I + P H LG+A NRL ++A ++ Sbjct: 294 FDGLRMYDDEKQVQAIVTQAFPAHDLGLAYMNRLNKSAGGQH 335 >gi|217963355|ref|YP_002349033.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes HCC23] gi|290892704|ref|ZP_06555696.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes FSL J2-071] gi|217332625|gb|ACK38419.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes HCC23] gi|290557764|gb|EFD91286.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes FSL J2-071] gi|307572068|emb|CAR85247.1| translation factor, SUA5 type [Listeria monocytogenes L99] Length = 345 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 119/326 (36%), Positives = 175/326 (53%), Gaps = 19/326 (5%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 ++A E L G +A PTETVYGL D+ N AI+++Y K RP+ NPLI H++ + + Sbjct: 19 QEAAELLQNGECVAFPTETVYGLGADATNQAAIQKIYAAKGRPSDNPLIVHIARLDQMNS 78 Query: 73 H-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 AS P ++ L + FWPGPLT++L L + +S A L T R+P + LI Sbjct: 79 FVASYPPKAIQLMEKFWPGPLTVILPLKKDSLAANVS-AGLSTVGVRMPEHPVSLALINA 137 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 P+A PSANRSG+ S T H++ + +I IIDGG + +GLEST+++ E + Sbjct: 138 ANVPVAAPSANRSGKPSPTTADHVI-EDLDGKIAGIIDGGATGVGLESTVIDCSLEMPI- 195 Query: 191 ILRPGGLEIETLKRAIS-VELEY-CVDETSTPQSPGMLKSHYAPRSQVRL-------RAI 241 ILRPGG+ E +++ I V++ ET P++PGM +HYAP++ V L Sbjct: 196 ILRPGGITKEQIEQVIGPVDISTNNTKETEKPKAPGMKYTHYAPKAPVYLIEGSTPFWQK 255 Query: 242 HVNPREAL-IRFGNVPIKN-IENAIISLNLSKTGKLK---EAAFNLFNYMKIADDSGASS 296 +N EA + G + K I+ S + TG +K E A +L+ ++ D + Sbjct: 256 EINKVEAANKKLGILATKELIDQLTTSAAVETTGSIKALDEIATSLYKGLRAFDHADVDI 315 Query: 297 IAFSSIPNHGLGIAINNRLERAAAPR 322 I P LG AI NRLE+AA R Sbjct: 316 IFAEVYPETELGAAIMNRLEKAAGNR 341 >gi|90961568|ref|YP_535484.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus salivarius UCC118] gi|227890654|ref|ZP_04008459.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus salivarius ATCC 11741] gi|90820762|gb|ABD99401.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus salivarius UCC118] gi|227867592|gb|EEJ75013.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus salivarius ATCC 11741] gi|300214393|gb|ADJ78809.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus salivarius CECT 5713] Length = 336 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 119/341 (34%), Positives = 180/341 (52%), Gaps = 32/341 (9%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I I + +A + L G +A PTETVYGL D+ N A++R+Y K RP+ NPL Sbjct: 1 MLITKIYKPSEFNEAAKELRLGELVAFPTETVYGLGADATNEQAVKRVYLAKGRPSDNPL 60 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 I VS + MVK+ V LS + K+ FWPG LT+VL + + + T LKTA F Sbjct: 61 IVTVSSLEMVKRF--VPSLSKEVEKIIEKFWPGSLTIVLKIKDGS-LSKTVTGGLKTAAF 117 Query: 118 RVPCGFTK-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P T LI G+P+ PSAN SG+ S T +H+ + I I+D G + +G+ Sbjct: 118 RMPKNETTLNLITALGNPIVGPSANSSGKPSPTTAQHVY-HDLEGRIAGILDDGPTDVGV 176 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPR 233 ESTI+++ E ILRPG + E +++ I E+ ++ V E P++PGM HYAP Sbjct: 177 ESTIIDMSTEIPT-ILRPGAVTAEEIEKVIGKEVYSDKHKVKENEIPKAPGMKYKHYAPS 235 Query: 234 SQVRLRAIHVNPREALIRFGN-------------VPIKNIENAIISLNLSKTGKLKEAAF 280 +QV + ++ + + +++ N V K +EN SL + ++ AA Sbjct: 236 AQVLI--VNKDNWNSALQWANENKNQVGILADDEVLSKALENKTYSLGEN----VESAAK 289 Query: 281 NLFNYMKIADDSGA-SSIAFSSIPNHGLGIAINNRLERAAA 320 NLF ++ DD I + P G+G+A NRL+++A Sbjct: 290 NLFAGLRYFDDDNQIKYILAEAFPEEGVGLAYMNRLKKSAG 330 >gi|47096963|ref|ZP_00234539.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes str. 1/2a F6854] gi|224500715|ref|ZP_03669064.1| hypothetical protein LmonF1_14001 [Listeria monocytogenes Finland 1988] gi|254828117|ref|ZP_05232804.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes FSL N3-165] gi|254831036|ref|ZP_05235691.1| hypothetical protein Lmon1_06738 [Listeria monocytogenes 10403S] gi|254900320|ref|ZP_05260244.1| hypothetical protein LmonJ_10917 [Listeria monocytogenes J0161] gi|254913441|ref|ZP_05263453.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254937822|ref|ZP_05269519.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes F6900] gi|47014673|gb|EAL05630.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes str. 1/2a F6854] gi|258600502|gb|EEW13827.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes FSL N3-165] gi|258610426|gb|EEW23034.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes F6900] gi|293591448|gb|EFF99782.1| conserved hypothetical protein [Listeria monocytogenes J2818] Length = 345 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 117/327 (35%), Positives = 177/327 (54%), Gaps = 19/327 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 ++A + L G +A PTETVYGL D+ N A++++YE K RP+ NPLI H++ + Sbjct: 18 FQEAAKLLQGGECVAFPTETVYGLGADATNQAAVQKIYEAKGRPSDNPLIVHIARREQMD 77 Query: 72 KHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + + P ++ L + FWPGPLT++L L + +S A L T R+P + LI Sbjct: 78 QFVASYPAKAIQLMEKFWPGPLTVILPLKKDSLATNVS-AGLSTVGVRMPEHPVSLALIG 136 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 T P+A PSANRSG+ S T H++ + +I IIDGG + +GLEST+++ E + Sbjct: 137 TANIPIAAPSANRSGKPSPTTASHVI-EDLDGKIAGIIDGGATGVGLESTVIDCSLEIPI 195 Query: 190 RILRPGGLEIETLKRAIS-VELEY-CVDETSTPQSPGMLKSHYAPRSQVRL-------RA 240 ILRPGG+ E +++ I V++ ET P++PGM +HYAP++ V L Sbjct: 196 -ILRPGGVTKEQIEQIIGPVDISTNNTKETEKPKAPGMKYTHYAPKAPVYLIEGSTQFWQ 254 Query: 241 IHVNPREAL-IRFGNVPIKNIENAI-ISLNLSKTGKLK---EAAFNLFNYMKIADDSGAS 295 +N EA + G + K + N + S + TG +K E A +L+ ++ D + Sbjct: 255 SEINKAEAANKKLGILATKELINQLNTSGTIETTGSIKALDEIATSLYKGLRAFDHADVD 314 Query: 296 SIAFSSIPNHGLGIAINNRLERAAAPR 322 I P LG AI NRLE+AA R Sbjct: 315 MIFAEVYPEMELGAAIMNRLEKAAGDR 341 >gi|261420780|ref|YP_003254462.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus sp. Y412MC61] gi|261377237|gb|ACX79980.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus sp. Y412MC61] Length = 349 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 122/331 (36%), Positives = 179/331 (54%), Gaps = 19/331 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +R+A E+L AG IA PTETVYGL D+ N A+ +++ K RP+ NPLI HV+ ++ + Sbjct: 21 IREAVEWLRAGEVIAFPTETVYGLGADAANTAAVEKIFAAKGRPSDNPLIVHVASMAQAE 80 Query: 72 K-HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 AS+ P++ L + FWPGPLTLVL + + TA L T R+P LIE Sbjct: 81 AVAASIPPMAKTLMERFWPGPLTLVLPKRAKA-VSERVTAGLPTVAVRMPDHPLALALIE 139 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G LA PSANRSG+ S T H+L + + I +IDGG + +G+EST+++ C V Sbjct: 140 ASGLALAAPSANRSGRPSPTTAAHVL-ADLDGRIAGVIDGGPTGVGVESTVLD--CSGSV 196 Query: 190 -RILRPGGLEIETLKRAIS-VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 ILRPGG+ E L AI VE VD+ + P++PGM +HYAP++ + + A + Sbjct: 197 PTILRPGGVTKEALIEAIGRVEEAAAVDDEAAPKAPGMKYTHYAPKAPLWIVAGPPAFLQ 256 Query: 248 ALIRFGNVPIKNI------EN-----AIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296 L+ K + EN A + L L+ A L++ ++ D++ Sbjct: 257 RLVDESRAEGKTVGVLTTEENRDQYAADVVLPCGTRQALETVASRLYDTLRRFDETNVDL 316 Query: 297 IAFSSIPNHGLGIAINNRLERAAAPRNQSQR 327 I + P G+G AI NRL +AA R S++ Sbjct: 317 IYSEAFPEEGIGAAIMNRLRKAAGGRAISEQ 347 >gi|319768450|ref|YP_004133951.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus sp. Y412MC52] gi|317113316|gb|ADU95808.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus sp. Y412MC52] Length = 355 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 122/331 (36%), Positives = 179/331 (54%), Gaps = 19/331 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +R+A E+L AG IA PTETVYGL D+ N A+ +++ K RP+ NPLI HV+ ++ + Sbjct: 27 IREAVEWLRAGEVIAFPTETVYGLGADAANTAAVEKIFAAKGRPSDNPLIVHVASMAQAE 86 Query: 72 K-HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 AS+ P++ L + FWPGPLTLVL + + TA L T R+P LIE Sbjct: 87 AVAASIPPMAKTLMERFWPGPLTLVLPKRAKA-VSERVTAGLPTVAVRMPDHPLALALIE 145 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G LA PSANRSG+ S T H+L + + I +IDGG + +G+EST+++ C V Sbjct: 146 ASGLALAAPSANRSGRPSPTTAAHVL-ADLDGRIAGVIDGGPTGVGVESTVLD--CSGSV 202 Query: 190 -RILRPGGLEIETLKRAIS-VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 ILRPGG+ E L AI VE VD+ + P++PGM +HYAP++ + + A + Sbjct: 203 PTILRPGGVTKEALIEAIGRVEEAAAVDDEAAPKAPGMKYTHYAPKAPLWIVAGPPAFLQ 262 Query: 248 ALIRFGNVPIKNI------EN-----AIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296 L+ K + EN A + L L+ A L++ ++ D++ Sbjct: 263 RLVDESRAEGKTVGVLTTEENRDQYAADVVLPCGTRQALETVASRLYDTLRRFDETNVDL 322 Query: 297 IAFSSIPNHGLGIAINNRLERAAAPRNQSQR 327 I + P G+G AI NRL +AA R S++ Sbjct: 323 IYSEAFPEEGIGAAIMNRLRKAAGGRAISEQ 353 >gi|56421910|ref|YP_149228.1| hypothetical protein GK3375 [Geobacillus kaustophilus HTA426] gi|56381752|dbj|BAD77660.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] Length = 349 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 122/331 (36%), Positives = 179/331 (54%), Gaps = 19/331 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +R+A E+L AG IA PTETVYGL D+ N A+ +++ K RP+ NPLI HV+ ++ + Sbjct: 21 IREAVEWLRAGEVIAFPTETVYGLGADAANTAAVEKIFAAKGRPSDNPLIVHVASMAQAE 80 Query: 72 K-HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 AS+ P++ L + FWPGPLTLVL + + TA L T R+P LIE Sbjct: 81 AVAASIPPMAKTLMERFWPGPLTLVLPKRAKA-VSERVTAGLPTVAVRMPDHPLALALIE 139 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G LA PSANRSG+ S T H+L + + I +IDGG + +G+EST+++ C V Sbjct: 140 ASGLALAAPSANRSGRPSPTTAAHVL-ADLDGRIAGVIDGGPTGVGVESTVLD--CSGGV 196 Query: 190 -RILRPGGLEIETLKRAIS-VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 ILRPGG+ E L AI VE VD+ + P++PGM +HYAP++ + + A + Sbjct: 197 PTILRPGGVTKEALIEAIGRVEEAAAVDDEAAPKAPGMKYTHYAPKAPLWIVAGPPAFLQ 256 Query: 248 ALIRFGNVPIKNI------EN-----AIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296 L+ K + EN A + L L+ A L++ ++ D++ Sbjct: 257 RLVDESRAEGKTVGVLTTEENRDQYAADVVLPCGTRQALETVASRLYDTLRRFDETNVDL 316 Query: 297 IAFSSIPNHGLGIAINNRLERAAAPRNQSQR 327 I + P G+G AI NRL +AA R S++ Sbjct: 317 IYSEAFPEEGIGAAIMNRLRKAAGGRAISEQ 347 >gi|315500839|ref|YP_004079726.1| sua5/ycio/yrdc/ywlc family protein [Micromonospora sp. L5] gi|315407458|gb|ADU05575.1| Sua5/YciO/YrdC/YwlC family protein [Micromonospora sp. L5] Length = 323 Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 117/315 (37%), Positives = 174/315 (55%), Gaps = 11/315 (3%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + +A L AG +A PTETVYGL ++ + A R++E K RP+ +PLI H++D + Sbjct: 13 RGIDEAAAVLRAGGLVAFPTETVYGLGANALDARAAARIFEAKARPSFDPLISHLADAAD 72 Query: 70 VKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 + P ++ LAK FWPGPLTL++D I P+ T+ L T RVP + L Sbjct: 73 LAALVGEVPAAVAELAKRFWPGPLTLIVDRPEI--IPPIVTSGLDTMAVRVPDESSARAL 130 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I G P+A PSANR GQ+S T +H++ + + + +++DGG ++ G+ESTIV+ + E+ Sbjct: 131 IAAAGVPVAAPSANRFGQLSPTRAEHVV-AGLGGAVDVVLDGGPTRCGIESTIVDARGER 189 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV--NP 245 V +LR G L +E L A+ +E + P +PG L +HYAPR+ +RL A Sbjct: 190 PV-VLRLGALPVEALVEAVG-PVEVRQGSSGQPVAPGTLAAHYAPRTPLRLGAAAEPGGG 247 Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305 R + F P A+ LS G + AA LF+ + D +G + I +P Sbjct: 248 RRGFLAFREPPADGDWAAVEV--LSPDGDVTAAAARLFDALHRLDAAGVTEIVAEPVPET 305 Query: 306 GLGIAINNRLERAAA 320 G+G AIN+RL RAAA Sbjct: 306 GVGRAINDRLRRAAA 320 >gi|297531575|ref|YP_003672850.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus sp. C56-T3] gi|297254827|gb|ADI28273.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus sp. C56-T3] Length = 355 Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 122/331 (36%), Positives = 179/331 (54%), Gaps = 19/331 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +R+A E+L AG IA PTETVYGL D+ N A+ +++ K RP+ NPLI HV+ ++ + Sbjct: 27 IREAVEWLRAGEVIAFPTETVYGLGADAANTAAVEKIFAAKGRPSDNPLIVHVASMAQAE 86 Query: 72 K-HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 AS+ P++ L + FWPGPLTLVL + + TA L T R+P LIE Sbjct: 87 AVAASIPPMAKTLMERFWPGPLTLVLPKRAKA-VSERVTAGLPTVAVRMPDHPLALALIE 145 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G LA PSANRSG+ S T H+L + + I +IDGG + +G+EST+++ C V Sbjct: 146 ASGLALAAPSANRSGRPSPTTAAHVL-ADLDGRIAGVIDGGPTGVGVESTVLD--CSGGV 202 Query: 190 -RILRPGGLEIETLKRAIS-VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 ILRPGG+ E L AI VE VD+ + P++PGM +HYAP++ + + A + Sbjct: 203 PTILRPGGVTKEALIEAIGRVEEAAAVDDEAAPKAPGMKYTHYAPKAPLWIVAGPPAFLQ 262 Query: 248 ALIRFGNVPIKNI------EN-----AIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296 L+ K + EN A + L L+ A L++ ++ D++ Sbjct: 263 RLVDESRAEGKTVGVLTTEENRDQYAADVVLPCGTRQALETVASRLYDTLRRFDETNVDL 322 Query: 297 IAFSSIPNHGLGIAINNRLERAAAPRNQSQR 327 I + P G+G AI NRL +AA R S++ Sbjct: 323 IYSEAFPEEGIGAAIMNRLRKAAGGRAISEQ 353 >gi|206901525|ref|YP_002250522.1| Sua5/YciO/YrdC/YwlC family protein [Dictyoglomus thermophilum H-6-12] gi|206740628|gb|ACI19686.1| Sua5/YciO/YrdC/YwlC family protein [Dictyoglomus thermophilum H-6-12] Length = 337 Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 116/328 (35%), Positives = 170/328 (51%), Gaps = 20/328 (6%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D AL KA + LDAG +A PTETVYGL D+ NP A+R+++ K RP NP+I HV Sbjct: 13 DLEALEKAAQVLDAGGLVAFPTETVYGLGADALNPEAVRKIFVAKGRPQDNPIIVHVGKK 72 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 V A +V P++ L + FWPGPLTL+ + ++ + TA R P Sbjct: 73 EQVYSLAENVSPIAERLMERFWPGPLTLI--FYKSNLVNDIVTAGSPKVGIRQPMNKVAL 130 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 KL+E +G P+A PSAN SG+ S T +H++ + I +IIDGG G+EST+++V Sbjct: 131 KLLEIFGRPIAAPSANASGRPSPTRAEHVI-EDLGDRIDMIIDGGEVSFGVESTVLDVTT 189 Query: 186 EKKVRILRPGGLEIETLKRAISVE-LEYCVDETSTPQSPGMLKSHYAPRSQV----RLRA 240 + + I RPG E ++R I + L + +T SPG+ HYAP+ + Sbjct: 190 DPPI-IYRPGACPKEEIERVIGRKVLLWRGKKTEDIPSPGLKYRHYAPKVPLYIIEEFNE 248 Query: 241 IHVNPREALIRFGNVP--IKNIENAIISLNLSKT------GKLKEAAFNLFNYMKIADDS 292 I N + ++ G + + EN + ++ K LKE A NLF Y++ + Sbjct: 249 IWQNKIDIWLKEGKKVGILVSKENEGLYPDIVKKYVVGSRNNLKEVALNLFFYLRKLEKE 308 Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAA 320 I S P G+G+AI +RL RAA Sbjct: 309 -VDIIISESFPEEGIGLAIMDRLRRAAG 335 >gi|219670827|ref|YP_002461262.1| Sua5/YciO/YrdC/YwlC family protein [Desulfitobacterium hafniense DCB-2] gi|219541087|gb|ACL22826.1| Sua5/YciO/YrdC/YwlC family protein [Desulfitobacterium hafniense DCB-2] Length = 348 Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 114/337 (33%), Positives = 177/337 (52%), Gaps = 30/337 (8%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +++A + + G +A+PTETVYGL ++ + A + ++++K RP NPLI H+SD++ Sbjct: 15 TEWIKEAAQLIREGQLVALPTETVYGLGANAMDAHACQEIFKVKGRPQDNPLIVHISDLA 74 Query: 69 MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 MVK+ P + A FWPGPLTLVL+ T + + + L T R+P + Sbjct: 75 MVKRLVEEWTPQAALCADKFWPGPLTLVLE--KTAFVPDVVSGGLGTVAIRMPQHPVALE 132 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LI+ G P+A PSAN SG+ S T H+ + +IPLI+DGG +G+EST++++ E Sbjct: 133 LIKEAGVPIAAPSANLSGKPSPTRGIHVWKD-LKGKIPLILDGGPCAVGVESTVLDLTGE 191 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETS---TPQSPGMLKSHYAPRSQVRL----- 238 ILRPGG+ E L+ + E VD + P++PGM HYAP+ ++ L Sbjct: 192 VPT-ILRPGGITKEQLEEVLG---EVAVDRPAPDQAPKAPGMKYRHYAPKGELTLLIGER 247 Query: 239 ----RAIHVNPREALIRFGNVPIK-NIENA--------IISLNLSKTGKLKEAAFNLFNY 285 R I R+ R V I +E+A + L +E A NL+ Sbjct: 248 KNVIRKIKDELRKGHSRLKKVGILCTLESAPELHSQLPDLLFVLGSEHHPEEVAGNLYQG 307 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 +++ D+ G I + GLG AI NRL++A+ R Sbjct: 308 LRLCDEQGMDMILAEGVSEKGLGFAIMNRLQKASGQR 344 >gi|163786575|ref|ZP_02181023.1| translation factor, SUA5-family protein [Flavobacteriales bacterium ALC-1] gi|159878435|gb|EDP72491.1| translation factor, SUA5-family protein [Flavobacteriales bacterium ALC-1] Length = 318 Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 116/326 (35%), Positives = 179/326 (54%), Gaps = 21/326 (6%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 MSI S + KA + L A +AIPTETVYGLA + + AI+ ++E K+RP NPLI H Sbjct: 1 MSIV-SKDISKAVDLLTAEELVAIPTETVYGLAGNIYSEKAIKSIFETKQRPFFNPLIVH 59 Query: 64 VSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 + + ++K + P LA+ FWPGP+TLVL T I + TA T RVP Sbjct: 60 IPSLDYLEKIVAYIPEKGKLLAEAFWPGPITLVLK--KKTIIPDIITAGKDTVAVRVPNH 117 Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 T +L+ PLA PSAN IS T +H+ + +I +++DGG K G+ESTI+ Sbjct: 118 PLTLELLNQLDFPLAAPSANPFSSISPTTAEHV-ETYFMDKIKMVLDGGACKSGIESTII 176 Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL--- 238 + ++ + I R G IE ++ + ++E + +P +PGML+ HYAP+++ L Sbjct: 177 GFEDDEPI-IYRLGSTPIEAIENVVG-KIEVKNKKEISPDAPGMLERHYAPKTKTILTRN 234 Query: 239 --RAI--HVNPREALIRFGNVPIKNIENAIISLN--LSKTGKLKEAAFNLFNYMKIADDS 292 ++I H N R ++ F ++ + + +I LS+ L+EAA L++ + D Sbjct: 235 LSKSIEKHRNKRIGVLMFNDI----LNDDVIQFKIVLSEGKNLEEAASKLYDALHQLDKQ 290 Query: 293 GASSIAFSSIPNHGLGIAINNRLERA 318 I +P++GLG +IN+RLERA Sbjct: 291 DLDIIIAEQLPDYGLGKSINDRLERA 316 >gi|299821849|ref|ZP_07053737.1| Sua5/YciO/YrdC/YwlC family protein [Listeria grayi DSM 20601] gi|299817514|gb|EFI84750.1| Sua5/YciO/YrdC/YwlC family protein [Listeria grayi DSM 20601] Length = 343 Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 118/337 (35%), Positives = 180/337 (53%), Gaps = 23/337 (6%) Query: 4 MSITDSNA--LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 ++ T SN + A + L AG IA PTETVYGL D+ N A+ ++Y K RP+ NPLI Sbjct: 8 LTDTSSNEEIYQAATDLLKAGECIAFPTETVYGLGADATNEAAVDKIYTAKGRPSDNPLI 67 Query: 62 CHVSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 H++ + ++ + P + L K FWPGPLT++L L + + + TA L++ R+P Sbjct: 68 VHIAHLEQLESLVTDVPDKAKELIKHFWPGPLTIILPLKAGS-LAKNVTAGLQSVGIRMP 126 Query: 121 CGFTKKLIETY-GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 Y G PLA PSAN SG+ S T +H+ + +I IIDGG + +GLEST Sbjct: 127 ENEVAHDFLAYSGLPLAAPSANSSGRPSPTTAQHV-QEDLTGKIAGIIDGGDTGVGLEST 185 Query: 180 IVNVQCEKKV-RILRPGGLEIETLKRAISVELEYCV---DETSTPQSPGMLKSHYAPRSQ 235 +++ C + ILRPGG+ E ++ I +L Y E P++PGM +HYAP++ Sbjct: 186 VID--CTVPIPAILRPGGVTQEEIEAVIG-QLAYTAVTSKEAEAPKAPGMKYTHYAPQAP 242 Query: 236 VRL----RAIHVNPREALIRFGNVP---IKNIENAIISLNL---SKTGKLKEAAFNLFNY 285 V L A + EA G P I + A++ ++ S L EAA +L++ Sbjct: 243 VYLIEGSSAYWIKQIEAAKARGEKPGLLISEKQKAVLQQDIPVYSTGNSLAEAATHLYDG 302 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 ++ D + I + P G+G+A+ NRLE+AA + Sbjct: 303 LRSFDHLDVTCIFAETYPQAGIGVALMNRLEKAAGGK 339 >gi|91218516|ref|ZP_01255455.1| Sua5/YciO/YrdC/YwlC [Psychroflexus torquis ATCC 700755] gi|91183347|gb|EAS69751.1| Sua5/YciO/YrdC/YwlC [Psychroflexus torquis ATCC 700755] Length = 318 Score = 166 bits (421), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 113/320 (35%), Positives = 178/320 (55%), Gaps = 18/320 (5%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S+ + KA E L+ +AIPTETVYGLA + + AIR+++++K+RP NPLI H+ I Sbjct: 5 SSDISKAIELLNKEDVVAIPTETVYGLAGNIYSEKAIRKIFQVKQRPLFNPLIVHIPSID 64 Query: 69 MVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 ++K A P+ LA+ FWPG LTL+L ++I + T T R+P T Sbjct: 65 QLEKVAREFPIKAQKLAEAFWPGSLTLILP--KKSNILEIVTGGKDTVGVRIPNHPVTLS 122 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L++ PLA PSAN +IS T+ H+ +P++++GG K G+ESTI+ + Sbjct: 123 LLKQLSFPLAAPSANPYNRISPTSSYHV-EGYFGNALPMVLEGGECKNGIESTIIGFENN 181 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL-----RAI 241 + + + R G + +E +++ I +++ +TP +PGML HYAP++++ L I Sbjct: 182 EAI-LYRLGAISVEEIEKIIG-KIQIRNKSDTTPNAPGMLAKHYAPKTKMYLLDDIDEFI 239 Query: 242 HVNPRE--ALIRF-GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIA 298 N + ++RF G + E+ I LSK+G LKEAA L++ + D+ I Sbjct: 240 ENNKSKKIGVLRFQGKLNTTRFEHIEI---LSKSGDLKEAASKLYSTLHKLDNLNLDIIV 296 Query: 299 FSSIPNHGLGIAINNRLERA 318 P+ GLG +IN+RLERA Sbjct: 297 AERFPDVGLGKSINDRLERA 316 >gi|303239759|ref|ZP_07326283.1| Sua5/YciO/YrdC/YwlC family protein [Acetivibrio cellulolyticus CD2] gi|302592696|gb|EFL62420.1| Sua5/YciO/YrdC/YwlC family protein [Acetivibrio cellulolyticus CD2] Length = 351 Score = 166 bits (421), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 120/340 (35%), Positives = 183/340 (53%), Gaps = 35/340 (10%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + +R A + L G +A PTETVYGL ++ N A+ R++ K RP+ NPLI HV+D Sbjct: 14 DISKIRYASQVLKDGGLVAFPTETVYGLGANALNKEAVERIFIAKGRPSDNPLIVHVADK 73 Query: 68 SMVKKHASVDP--LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 V+K S P S+ + K FWPGPLTLV+D L I + TA L T RVP Sbjct: 74 RSVEKLVSHIPNKASILMDK-FWPGPLTLVMDKLPI--IPEVITAGLDTVAIRVPSHPIA 130 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 LI P+A PSAN SG+ S T+ +H++ + + ++ +IIDGG S IG+EST+V++ Sbjct: 131 LALIREAELPVAAPSANVSGKPSPTDSRHVI-NDLNGKVDVIIDGGFSDIGVESTVVDMV 189 Query: 185 CEKKVRILRPGGLEIETLKRAIS------VELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238 + + +LRPGG+ +E L+ + ++ +D+ P+SPGM HYAP++ V + Sbjct: 190 LDPPM-LLRPGGITVEQLEDVLGQIQIDPTLVKKNLDDIIIPRSPGMKYKHYAPKADVII 248 Query: 239 RAIHVNPREALIRFGNVPIKNIENAII----------------SLNLSKTGKLKEA--AF 280 + +P + +R N +K E I SL +S +L A Sbjct: 249 --VEGDPEKIAVRI-NEMVKEYEGKDIKVGILATDETVHLYPESLAVSLGSRLSPGTIAA 305 Query: 281 NLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 NLF ++ D + I S+ + G+G+AI NR+++AA Sbjct: 306 NLFKALRDFDKTDVQMIFAESVDSSGIGLAIMNRMKKAAG 345 >gi|169826582|ref|YP_001696740.1| hypothetical protein Bsph_0998 [Lysinibacillus sphaericus C3-41] gi|168991070|gb|ACA38610.1| Hypothetical ywlC protein [Lysinibacillus sphaericus C3-41] Length = 344 Score = 166 bits (421), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 119/349 (34%), Positives = 186/349 (53%), Gaps = 35/349 (10%) Query: 3 IMSITDSNA-----LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 + + DSN +A + L+AG +A PTETVYGL + N TA+++++E K RP+ Sbjct: 4 VCKVVDSNVNSQINYTQAVDILNAGEVVAFPTETVYGLGAVATNDTAVKKIFEAKGRPSD 63 Query: 58 NPLICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVL----DLLSTTDIHPLSTANL 112 NPLI HV V + + ++ LFWPGPLTLV+ ++L+ + TA L Sbjct: 64 NPLIVHVGTKEEVTNYIEHISEIAKQCIDLFWPGPLTLVMPAKPNVLAQS-----VTAGL 118 Query: 113 KTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171 T R+P L++ PLA PSANRSG+ S T H+L + IP I+DGG Sbjct: 119 STVGIRMPDHPVALALLQQLQKPLAAPSANRSGKPSPTEAIHVL-DDLGGYIPYILDGGS 177 Query: 172 SKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS-----VELEYCVDETSTPQSPGML 226 + IGLEST+++V E V ILRPGG+ E L+ I ++E ++E TP++PGM Sbjct: 178 TGIGLESTVLDVTHEPPV-ILRPGGITKEILEATIGPVIQPTKIEQKLEE--TPKAPGMK 234 Query: 227 KSHYAPRSQVRLRAIHVNP-REALIRFGN-------VPIKNIEN--AIISLNLSKTGKLK 276 +HYAP + V L H EA+ + + +N ++ A ++ + G + Sbjct: 235 YTHYAPNAPVYLINCHDGEVSEAVQQLQQQGHEVALLAPQNFQHIKADFYFSVGEEGSKE 294 Query: 277 EAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325 + +L++ ++ D + A+ I ++ G+G AI NRLE+A+ + S Sbjct: 295 DMGASLYHALRACDKTTATVILATTTSTEGVGAAIMNRLEKASGGKWYS 343 >gi|302864546|ref|YP_003833183.1| Sua5/YciO/YrdC/YwlC family protein [Micromonospora aurantiaca ATCC 27029] gi|302567405|gb|ADL43607.1| Sua5/YciO/YrdC/YwlC family protein [Micromonospora aurantiaca ATCC 27029] Length = 323 Score = 166 bits (420), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 117/315 (37%), Positives = 176/315 (55%), Gaps = 11/315 (3%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + +A L AG +A PTETVYGL ++ + A R++E K RP+ +PLI H++D + Sbjct: 13 RGIDEAAAVLRAGGLVAFPTETVYGLGANALDARAAARIFEAKARPSFDPLISHLADAAD 72 Query: 70 VKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKL 127 + P ++ LAK FWPGPLTL++D I P+ T+ L T RVP + + L Sbjct: 73 LAALVGEVPAAVAELAKRFWPGPLTLIVDRPEI--IPPIVTSGLDTMAVRVPDEPSARAL 130 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I G P+A PSANR GQ+S T +H++ + + + +++DGG ++ G+ESTIV+ + E+ Sbjct: 131 IAAAGVPVAAPSANRFGQLSPTRAEHVV-AGLGGAVDVVLDGGPTRCGIESTIVDARGER 189 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV--NP 245 V +LR G L +E L A+ +E + P +PG L +HYAPR+ +RL A Sbjct: 190 PV-VLRLGALPVEALVEAVG-PVEVRQGSSGQPVAPGTLAAHYAPRTPLRLGAAAEPGGG 247 Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305 R + F P + A+ LS G + AA LF+ + D +G + I +P Sbjct: 248 RRGFLAFREPPADSDWAAVEV--LSPDGDVTAAAARLFDALHRLDAAGVTEIVAEPVPET 305 Query: 306 GLGIAINNRLERAAA 320 G+G AIN+RL RAAA Sbjct: 306 GVGRAINDRLRRAAA 320 >gi|255016728|ref|ZP_05288854.1| hypothetical protein LmonF_00646 [Listeria monocytogenes FSL F2-515] Length = 344 Score = 166 bits (420), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 117/327 (35%), Positives = 177/327 (54%), Gaps = 19/327 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 ++A + L G +A PTETVYGL D+ N A++++YE K RP+ NPLI H++ + Sbjct: 17 FQEAAKLLQGGECVAFPTETVYGLGADATNQAAVQKIYEAKGRPSDNPLIVHIARREQMD 76 Query: 72 KHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + + P ++ L + FWPGPLT++L L + +S A L T R+P + LI Sbjct: 77 QFVASYPAKAIQLMEKFWPGPLTVILPLKKDSLATNVS-AGLSTVGVRMPEHPVSLALIG 135 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 T P+A PSANRSG+ S T H++ + +I IIDGG + +GLEST+++ E + Sbjct: 136 TANIPIAAPSANRSGKPSPTTASHVI-EDLDGKIAGIIDGGATGVGLESTVIDCSLEIPI 194 Query: 190 RILRPGGLEIETLKRAIS-VELEY-CVDETSTPQSPGMLKSHYAPRSQVRL-------RA 240 ILRPGG+ E +++ I V++ ET P++PGM +HYAP++ V L Sbjct: 195 -ILRPGGVTKEQIEQIIGPVDISTNNTKETEKPKAPGMKYTHYAPKAPVYLIEGSTQFWQ 253 Query: 241 IHVNPREAL-IRFGNVPIKNIENAI-ISLNLSKTGKLK---EAAFNLFNYMKIADDSGAS 295 +N EA + G + K + N + S + TG +K E A +L+ ++ D + Sbjct: 254 SEINKAEAANKKLGILATKELINQLNTSGTIETTGSIKALDEIATSLYKGLRAFDHADVD 313 Query: 296 SIAFSSIPNHGLGIAINNRLERAAAPR 322 I P LG AI NRLE+AA R Sbjct: 314 IIFAEVYPETELGAAIMNRLEKAAGNR 340 >gi|16804579|ref|NP_466064.1| hypothetical protein lmo2541 [Listeria monocytogenes EGD-e] gi|224503219|ref|ZP_03671526.1| hypothetical protein LmonFR_11993 [Listeria monocytogenes FSL R2-561] gi|255026494|ref|ZP_05298480.1| hypothetical protein LmonocytFSL_09443 [Listeria monocytogenes FSL J2-003] gi|255028536|ref|ZP_05300487.1| hypothetical protein LmonL_03806 [Listeria monocytogenes LO28] gi|284802979|ref|YP_003414844.1| hypothetical protein LM5578_2736 [Listeria monocytogenes 08-5578] gi|284996120|ref|YP_003417888.1| hypothetical protein LM5923_2685 [Listeria monocytogenes 08-5923] gi|16412029|emb|CAD00619.1| lmo2541 [Listeria monocytogenes EGD-e] gi|284058541|gb|ADB69482.1| hypothetical protein LM5578_2736 [Listeria monocytogenes 08-5578] gi|284061587|gb|ADB72526.1| hypothetical protein LM5923_2685 [Listeria monocytogenes 08-5923] Length = 345 Score = 166 bits (420), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 117/327 (35%), Positives = 177/327 (54%), Gaps = 19/327 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 ++A + L G +A PTETVYGL D+ N A++++YE K RP+ NPLI H++ + Sbjct: 18 FQEAAKLLQGGECVAFPTETVYGLGADATNQAAVQKIYEAKGRPSDNPLIVHIARREQMD 77 Query: 72 KHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + + P ++ L + FWPGPLT++L L + +S A L T R+P + LI Sbjct: 78 QFVASYPAKAIQLMEKFWPGPLTVILPLKKDSLATNVS-AGLSTVGVRMPEHPVSLALIG 136 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 T P+A PSANRSG+ S T H++ + +I IIDGG + +GLEST+++ E + Sbjct: 137 TANIPIAAPSANRSGKPSPTTASHVI-EDLDGKIAGIIDGGATGVGLESTVIDCSLEIPI 195 Query: 190 RILRPGGLEIETLKRAIS-VELEY-CVDETSTPQSPGMLKSHYAPRSQVRL-------RA 240 ILRPGG+ E +++ I V++ ET P++PGM +HYAP++ V L Sbjct: 196 -ILRPGGVTKEQIEQIIGPVDISTNNTKETEKPKAPGMKYTHYAPKAPVYLIEGSTQFWQ 254 Query: 241 IHVNPREAL-IRFGNVPIKNIENAI-ISLNLSKTGKLK---EAAFNLFNYMKIADDSGAS 295 +N EA + G + K + N + S + TG +K E A +L+ ++ D + Sbjct: 255 SEINKAEAANKKLGILATKELINQLNTSGTIETTGSIKALDEIATSLYKGLRAFDHADVD 314 Query: 296 SIAFSSIPNHGLGIAINNRLERAAAPR 322 I P LG AI NRLE+AA R Sbjct: 315 IIFAEVYPETELGAAIMNRLEKAAGNR 341 >gi|89897678|ref|YP_521165.1| hypothetical protein DSY4932 [Desulfitobacterium hafniense Y51] gi|89337126|dbj|BAE86721.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 348 Score = 166 bits (420), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 114/337 (33%), Positives = 177/337 (52%), Gaps = 30/337 (8%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +++A + + G +A+PTETVYGL ++ + A + ++++K RP NPLI H+SD++ Sbjct: 15 TEWIKEAAQLIREGQLVALPTETVYGLGANAMDAHACQEIFKVKGRPQDNPLIVHISDLA 74 Query: 69 MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 MVK+ P + A FWPGPLTLVL+ T + + + L T R+P + Sbjct: 75 MVKRLVEEWTPQAALCADKFWPGPLTLVLE--KTAFVPDVVSGGLGTVAIRMPKHPVALE 132 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LI+ G P+A PSAN SG+ S T H+ + +IPLI+DGG +G+EST++++ E Sbjct: 133 LIKEAGVPIAAPSANLSGKPSPTQGIHVWKD-LKGKIPLILDGGPCAVGVESTVLDLTDE 191 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETS---TPQSPGMLKSHYAPRSQVRL----- 238 ILRPGG+ E L+ + E VD + P++PGM HYAP+ ++ L Sbjct: 192 VPT-ILRPGGITKEQLEEVLG---EVAVDRPAPDQAPKAPGMKYRHYAPKGELTLLIGER 247 Query: 239 ----RAIHVNPREALIRFGNVPIK-NIENA--------IISLNLSKTGKLKEAAFNLFNY 285 R I R+ R V I +E+A + L +E A NL+ Sbjct: 248 KNVIRKIKDELRKGHSRLKKVGILCTLESAPELHSQLPDLLFVLGSEHHPEEVAGNLYQG 307 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 +++ D+ G I + GLG AI NRL++A+ R Sbjct: 308 LRLCDEQGMDMILAEGVSEKGLGFAIMNRLQKASGQR 344 >gi|254456156|ref|ZP_05069585.1| Sua5/YciO/YrdC family protein [Candidatus Pelagibacter sp. HTCC7211] gi|207083158|gb|EDZ60584.1| Sua5/YciO/YrdC family protein [Candidatus Pelagibacter sp. HTCC7211] Length = 310 Score = 166 bits (420), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 118/326 (36%), Positives = 175/326 (53%), Gaps = 28/326 (8%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 M SN ++KA ++LD IA+PTETVYGLA ++ + A+++++++KKRP+ NPLI H Sbjct: 1 MKTIQSN-IKKAKKYLDNNDCIAVPTETVYGLAGNAYSNIAVKKIFKLKKRPSNNPLIVH 59 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 +I+ +K +++ L K F PGP+T VL L I T K+ R P Sbjct: 60 YYNINKLKNDCNINENFKKLYKRFSPGPITYVLSLKKNCKISKFVTNKQKSLAVRFPKHP 119 Query: 123 FTKKLIETYGHPLAIPSANRSGQIS---ITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 KKL++ +PLA PSAN S ++S ++VK S ++ I++GG IG+EST Sbjct: 120 LFKKLLKNLDYPLAAPSANISTKLSSVQASDVKEEFGS----KVRYILNGGKCNIGVEST 175 Query: 180 IVNVQCEKKVRILRPGGLEI----ETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQ 235 I+N+ K +LR GGLEI + LK+ IS+ + + +PG HY+P Sbjct: 176 IINLT--NKPTLLRYGGLEISRIEKILKKKISINI-----NSKKKIAPGQFPLHYSPGVP 228 Query: 236 VRLRAIHVNPREA--LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293 +R+ EA LI+ N+ KN LSK L EAA NL++ ++ G Sbjct: 229 LRVNVKKSKSNEAFVLIKKRNINSKNY------YYLSKKNNLNEAAKNLYSILRKIKKDG 282 Query: 294 ASSIAFSSIPNHGLGIAINNRLERAA 319 IA IPN G+G IN+RL RA+ Sbjct: 283 YKMIAVEKIPNIGIGKTINDRLNRAS 308 >gi|294495411|ref|YP_003541904.1| Sua5/YciO/YrdC/YwlC family protein [Methanohalophilus mahii DSM 5219] gi|292666410|gb|ADE36259.1| Sua5/YciO/YrdC/YwlC family protein [Methanohalophilus mahii DSM 5219] Length = 355 Score = 166 bits (420), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 112/344 (32%), Positives = 179/344 (52%), Gaps = 33/344 (9%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+I T + +KA + L G +A PTETVYGL D+ NP A+ ++++ K RPA NPL Sbjct: 14 MRIAEETAEDIFKKAGKLLREGKTVAFPTETVYGLGADALNPQAVEQIFKAKGRPADNPL 73 Query: 61 ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I HVS+ + + PL+ LA+ FWPGPLT++L+ T + ++T L+T R+ Sbjct: 74 IVHVSNQEQCNQLVITFTPLAEKLAECFWPGPLTIILE--KTDRVPYITTGRLETVAIRM 131 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P +K+IE P+A PSAN SG+ S T H+ + I I+DGG +IG+ES Sbjct: 132 PANQIARKIIEAACKPIAAPSANISGRPSPTTASHV-EEDLQGRIDAIVDGGEVEIGVES 190 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV-----DETSTPQSPGMLKSHYAPR 233 T+V+ + E V ILRPG + + +++ E+ C+ D P SPGM +HY+P Sbjct: 191 TVVDARREVPV-ILRPGKISAKDIQQCTKTEV--CIGYARKDNMEKPLSPGMKYTHYSPS 247 Query: 234 SQVRLRAIHVNPREALIRFGNVPIKNIENAIIS-----------------LNLSKTGKLK 276 ++V L + ++ + ++ K ++ + L++ + K + Sbjct: 248 ARVIL--VQGKAKDVAAKIADIIGKTNDDQKKAGLLLTVEIQKEFPLEKKLSIGQGTKPR 305 Query: 277 EAAFNLFNYMKIADDSGASSIAFS-SIPNHGLGIAINNRLERAA 319 EAA +F ++ D G I S G+G A+ RL++AA Sbjct: 306 EAAKRIFAGLREMDSKGMDLIIVDGSFTEKGIGAAVLERLQKAA 349 >gi|315283702|ref|ZP_07871810.1| protein Sua5 [Listeria marthii FSL S4-120] gi|313612655|gb|EFR86689.1| protein Sua5 [Listeria marthii FSL S4-120] Length = 315 Score = 166 bits (419), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 118/318 (37%), Positives = 169/318 (53%), Gaps = 19/318 (5%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLSLHL 83 +A PTETVYGL D+ N AI+++Y K RP+ NPLI H+ + AS P +L L Sbjct: 1 MAFPTETVYGLGADATNQAAIQKIYAAKGRPSDNPLIVHIGRREQMDSFVASYPPKALQL 60 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142 + FWPGPLT++L L + +S A L T R+P + +LI+ P+A PSANR Sbjct: 61 MEKFWPGPLTVILPLKKDSLAANVS-AGLSTVGVRMPEHPVSLELIKAANIPVAAPSANR 119 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202 SG+ S T H++ + +I IIDGG + +GLEST+++ E + ILRPGG+ E + Sbjct: 120 SGKPSPTTANHVI-EDLDGKIAGIIDGGPTGVGLESTVIDCSLEMPI-ILRPGGITKEQI 177 Query: 203 KRAIS--VELEYCVDETSTPQSPGMLKSHYAPRSQVRL-------RAIHVNPREAL-IRF 252 +R I ET P++PGM +HYAP++ V L +N EA + Sbjct: 178 ERVIGPVDSSSNSTTETEKPKAPGMKYTHYAPKAPVYLIEGSTEFWQSEINKAEAAHKKI 237 Query: 253 GNVPIKNIENAI-ISLNLSKTGK---LKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLG 308 G + K + + + S + TG L E A NL+N ++ D + I P LG Sbjct: 238 GILATKELTDKLTTSAVIQTTGSIDALDEVATNLYNGLRAFDHADVELIFAEVYPETELG 297 Query: 309 IAINNRLERAAAPRNQSQ 326 AI NRLE+AA R S+ Sbjct: 298 AAIMNRLEKAAGNRRISE 315 >gi|299537975|ref|ZP_07051261.1| hypothetical protein BFZC1_18255 [Lysinibacillus fusiformis ZC1] gi|298726557|gb|EFI67146.1| hypothetical protein BFZC1_18255 [Lysinibacillus fusiformis ZC1] Length = 344 Score = 166 bits (419), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 122/351 (34%), Positives = 186/351 (52%), Gaps = 39/351 (11%) Query: 3 IMSITDSNA-----LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 + + DSN +A + L+AG +A PTETVYGL + N A+++++E K RP+ Sbjct: 4 VCKVVDSNVNSQINYTQAVDILNAGEVVAFPTETVYGLGAIATNDLAVKKIFEAKGRPSD 63 Query: 58 NPLICHVS---DISMVKKHASVDPLSLHLAKLFWPGPLTLVL----DLLSTTDIHPLSTA 110 NPLI HV ++++ H + ++ LFWPGPLTLV+ ++L+ + TA Sbjct: 64 NPLIVHVGTKEEVAIYIDH--ITDIAKQCMDLFWPGPLTLVMPAKPNVLAKS-----VTA 116 Query: 111 NLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169 L T R+P L++ PLA PSANRSG+ S T H+L + IP I+DG Sbjct: 117 GLSTVGIRMPDHPVALALLQQLQKPLAAPSANRSGKPSPTEAVHVL-DDLEGYIPYILDG 175 Query: 170 GISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS-----VELEYCVDETSTPQSPG 224 G + IGLEST+++V E V ILRPGG+ E L+ I ++E +D +TP++PG Sbjct: 176 GSTGIGLESTVLDVTHEPPV-ILRPGGITKEMLEAKIGPVIQPTKIEQKLD--ATPKAPG 232 Query: 225 MLKSHYAPRSQVRLRAIHVNP-REALI-------RFGNVPIKNIENAIISLNLS--KTGK 274 M +HYAP + V L V EA++ R + +N E + S + G Sbjct: 233 MKYTHYAPNAPVYLIDCDVEKVNEAVLHLQRQGHRVALLAPENFEEIKVDFYFSIGEAGS 292 Query: 275 LKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325 +E L+N ++ D + A+ I ++ G+G AI NRLE+A+ + S Sbjct: 293 KEEMGAALYNALRACDKTTATVILATTTSIEGVGAAIMNRLEKASGGKWYS 343 >gi|310659435|ref|YP_003937156.1| sua5/ycio/yrdc/ywlc family protein [Clostridium sticklandii DSM 519] gi|308826213|emb|CBH22251.1| sua5/yciO/yrdC/ywlC family protein [Clostridium sticklandii] Length = 347 Score = 166 bits (419), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 114/328 (34%), Positives = 177/328 (53%), Gaps = 25/328 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS---DIS 68 L K L AG + PTETVYGL ++ +P A +++YE K RP+ NPLI H+S D+ Sbjct: 22 LHKVANLLKAGKTVVFPTETVYGLGANALDPEAAKKIYEAKGRPSDNPLIVHISKKEDVD 81 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + S D S L + FWPGPLTL+LD + I +T L T R+P +KL Sbjct: 82 FLAGNISQD--SKLLMEDFWPGPLTLILDKSDSVPIE--TTGGLMTVAIRMPSNPIARKL 137 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I+ G P+A PSAN SG+ SIT+ K+++ +C+ + II S+IGLEST+V++ Sbjct: 138 IDLAGVPIAAPSANISGRPSITSSKYLV-EELCERVDAIIISEDSEIGLESTVVDMTAST 196 Query: 188 KVRILRPGGLEIETLKRAISVELEY---CVDETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244 V ILRPG + +++ ++ E+E DE + P+SPGM HY+P + V + ++ Sbjct: 197 PV-ILRPGKIGKTEIEKILNKEIELDPSLKDENAAPKSPGMKYKHYSPNATVIVVTGSLD 255 Query: 245 PREALIRFGNVPIKNIENAI--------ISL----NLSKTGKLKEAAFNLFNYMKIADDS 292 + I KNI + + +SL +S +EAA NLF +++ D+ Sbjct: 256 EMKQKINQKLSLDKNIGDKVKVVCLEDRVSLYDGYGISWGKSSQEAAKNLFKILRLMDEQ 315 Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAA 320 + F ++ + + A+ NRL +AA Sbjct: 316 NIEVVYFEALNSDEISEAVMNRLIKAAG 343 >gi|282600841|ref|ZP_05979863.2| Sua5/YciO/YrdC/YwlC family protein [Subdoligranulum variabile DSM 15176] gi|282571097|gb|EFB76632.1| Sua5/YciO/YrdC/YwlC family protein [Subdoligranulum variabile DSM 15176] Length = 339 Score = 166 bits (419), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 112/327 (34%), Positives = 170/327 (51%), Gaps = 26/327 (7%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A E L G +A+PTETVYG+A D+RN A+R+++E K RP NPLI H+ + M++ Sbjct: 16 AAELLRQGELVALPTETVYGIAADARNGDAVRKIFEAKGRPQDNPLIVHICGMDMLQGIV 75 Query: 75 SVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132 S P +L LA FWPGPLT+V+ ++ ++ A L T R+P + +I+ G Sbjct: 76 SEVPERALKLAAAFWPGPLTMVMP--RGAEVSEVTCAGLDTVGVRMPSHPVVQAVIKASG 133 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192 A PSAN SG+ S TN + L + + +PLI+DGG S +G+EST+V+V E + +L Sbjct: 134 VAFAAPSANLSGKPSPTNAQDTL-ADMHGRLPLILDGGESAVGVESTVVSVTGEHPI-LL 191 Query: 193 RPGGLEIETLKRAISVELEYC------VDETSTPQSPGMLKSHYAPRSQV---------- 236 RPG + E ++ + E++ + E +SPGM HYAP++QV Sbjct: 192 RPGYITKEQMEAVLGEEVQVSPAILEKLKEGEVARSPGMKYKHYAPKAQVTILRGNFEAY 251 Query: 237 -RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 R A H P + F + + + S+ + A +LF ++ D GA Sbjct: 252 CRYVAEHAAPGVWALCFDG---EGAQLPVPSIEYGRNHDGATQAHHLFTALRDLDRHGAQ 308 Query: 296 SIAFSSIPNHGLGIAINNRLERAAAPR 322 + G+ +A+ NRL RAAA R Sbjct: 309 VVYARCPEQDGISMAVYNRLIRAAAFR 335 >gi|148543689|ref|YP_001271059.1| translation factor SUA5 [Lactobacillus reuteri DSM 20016] gi|184153099|ref|YP_001841440.1| putative translation factor [Lactobacillus reuteri JCM 1112] gi|227363332|ref|ZP_03847461.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus reuteri MM2-3] gi|325682060|ref|ZP_08161578.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus reuteri MM4-1A] gi|148530723|gb|ABQ82722.1| translation factor SUA5 [Lactobacillus reuteri DSM 20016] gi|183224443|dbj|BAG24960.1| putative translation factor [Lactobacillus reuteri JCM 1112] gi|227071639|gb|EEI09933.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus reuteri MM2-3] gi|324978704|gb|EGC15653.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus reuteri MM4-1A] Length = 342 Score = 166 bits (419), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 109/325 (33%), Positives = 177/325 (54%), Gaps = 19/325 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + G +A PTETVYGL D+ N A++ +Y K RP+ NPLI HV+ I+MV+ Sbjct: 11 IAQAAAAIKRGELVAFPTETVYGLGADATNEKAVKNVYLAKGRPSDNPLIVHVNSIAMVE 70 Query: 72 KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129 K+A+ P + L FWPG LT++L + + T LKT FR P C T LIE Sbjct: 71 KYAAEIPDNARKLMDAFWPGSLTIILKIKKGA-LSKTVTGGLKTVAFRYPDCQPTLDLIE 129 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G P+ PSAN SG+ S T +H+ + +I I+D G +++G+EST++++ + V Sbjct: 130 EAGVPMVGPSANTSGKPSPTTAQHVY-HDLHGKISGIVDNGPTRVGVESTVLDMSTDHPV 188 Query: 190 RILRPGGLEIETLKRAI-SVEL-EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 ILRPG + + +++ I S++L + V + TP++PGM HYAP++QV + + + Sbjct: 189 -ILRPGAVTKKDIEKVIGSIDLNHHKVGKNETPKAPGMKYKHYAPKAQVYIVDEDTDWDK 247 Query: 248 ALIRFGNVPI--------KNIENAIISLN---LSKTGKLKEAAFNLFNYMKIADDS-GAS 295 + P K ++ ++ +N S +++A+ LF+ ++ DD Sbjct: 248 VVEWIRQQPFDVGMMAEEKVLQQEVLPMNAIQFSLGKNVQDASARLFDGLRQFDDQPNVK 307 Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320 +I + P H LG A NRL ++A Sbjct: 308 AIVTQAFPAHDLGGAYMNRLNKSAG 332 >gi|256850893|ref|ZP_05556282.1| Sua5 family translation factor [Lactobacillus jensenii 27-2-CHN] gi|260661107|ref|ZP_05862021.1| Sua5 family translation factor [Lactobacillus jensenii 115-3-CHN] gi|282934195|ref|ZP_06339473.1| hypothetical protein HMPREF0886_1793 [Lactobacillus jensenii 208-1] gi|256615955|gb|EEU21143.1| Sua5 family translation factor [Lactobacillus jensenii 27-2-CHN] gi|260548044|gb|EEX24020.1| Sua5 family translation factor [Lactobacillus jensenii 115-3-CHN] gi|281301809|gb|EFA94075.1| hypothetical protein HMPREF0886_1793 [Lactobacillus jensenii 208-1] Length = 333 Score = 165 bits (418), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 112/327 (34%), Positives = 175/327 (53%), Gaps = 16/327 (4%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I + + +A EFL G +A PTETVYGL + +++ +Y+ K RP+ NPLI VS Sbjct: 5 ILKKDQIDQAVEFLKNGELVAFPTETVYGLGAIATKEESVKNVYKAKGRPSDNPLIVTVS 64 Query: 66 DISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 D M+K++A P + L K FWPGPLTL+L L+ + + T LKTA FR P Sbjct: 65 DEDMMKQYAKFIPERAEKLIKHFWPGPLTLLL-LVKEGSLPTVVTGGLKTAAFRCPDDEL 123 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 T +LI G+P+ PSAN S + S T +H+ + +I IIDGG +++GLESTI+++ Sbjct: 124 THELISKLGYPIVGPSANTSTKPSPTTAEHVY-HDLKGKISAIIDGGATEVGLESTIIDL 182 Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 E + +LRPG + E L + + ++ V + + P++PGM HYAP + V + Sbjct: 183 SVETPI-VLRPGQITPEELSKVLGEKVLINTGKVSDKTIPKAPGMKYRHYAPSAPVWV-V 240 Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGK------LKEAAFNLFNYMKIADDSGA 294 V + + + +++ + +L+L K LK+A NLF+ ++ DD + Sbjct: 241 DDVKDFSKISYTSDTAVAALDSVLDTLDLPAENKFSLGKDLKDADHNLFSALRFFDDEAS 300 Query: 295 -SSIAFSSIPNHGLGIAINNRLERAAA 320 +I +A NRL +AAA Sbjct: 301 IKTIYVQGFDEGEQSLAYMNRLNKAAA 327 >gi|223937828|ref|ZP_03629728.1| Sua5/YciO/YrdC/YwlC family protein [bacterium Ellin514] gi|223893434|gb|EEF59895.1| Sua5/YciO/YrdC/YwlC family protein [bacterium Ellin514] Length = 388 Score = 165 bits (418), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 120/330 (36%), Positives = 181/330 (54%), Gaps = 27/330 (8%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 A+++A E L AG +A+PTETVYGLA ++ + A+ R++E K RPA NP+I HV+DI M Sbjct: 65 KAVKRAAELLRAGELVALPTETVYGLAANALDAAAVGRIFEAKGRPAHNPIIVHVADIEM 124 Query: 70 VKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + S P+ LA+ FWPGPLTLVL I + TA T R P F + + Sbjct: 125 ARACVSEWPVQAEKLARAFWPGPLTLVLP--RAESIPDIVTAGGSTVGLRWPSHPFIQAV 182 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I G PLA PSAN S QIS TN +H+ S + I LI+DGG S++G+EST++++ Sbjct: 183 IRECGFPLAAPSANPSNQISPTNAEHV-SKGLGTRIKLIVDGGQSQVGIESTVLDISV-S 240 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTP-------QSPGMLKSHYAPRSQVRLRA 240 R+LRPG + E L+ A+ E + +TS +SPG LK HY+P++++ + + Sbjct: 241 PARVLRPGMIREEALQAALPA--ETVLSQTSKKGTKAEIIKSPGQLKKHYSPKARLEILS 298 Query: 241 IHVNP----REALIRFGNVPIKNIENAIISLNLSKTGKLK------EA-AFNLFNYMKIA 289 P + A + I+ I + +I + + G + EA A ++ + Sbjct: 299 WENEPDFLSQIARRKIAAEKIQVIAHTVIP-SAGRFGGVSVIPHDAEAFARAIYAELHRC 357 Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAA 319 D++GA I ++P AI +RL+RAA Sbjct: 358 DEAGAELIIVEALPESSEWQAIADRLKRAA 387 >gi|297205770|ref|ZP_06923165.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus jensenii JV-V16] gi|297148896|gb|EFH29194.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus jensenii JV-V16] Length = 337 Score = 165 bits (418), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 112/327 (34%), Positives = 175/327 (53%), Gaps = 16/327 (4%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I + + +A EFL G +A PTETVYGL + +++ +Y+ K RP+ NPLI VS Sbjct: 9 ILKKDQIDQAVEFLKNGELVAFPTETVYGLGAIATKEESVKNVYKAKGRPSDNPLIVTVS 68 Query: 66 DISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 D M+K++A P + L K FWPGPLTL+L L+ + + T LKTA FR P Sbjct: 69 DEDMMKQYAKFIPERAEKLIKHFWPGPLTLLL-LVKEGSLPTVVTGGLKTAAFRCPDDEL 127 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 T +LI G+P+ PSAN S + S T +H+ + +I IIDGG +++GLESTI+++ Sbjct: 128 THELISKLGYPIVGPSANTSTKPSPTTAEHVY-HDLKGKISAIIDGGATEVGLESTIIDL 186 Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 E + +LRPG + E L + + ++ V + + P++PGM HYAP + V + Sbjct: 187 SVETPI-VLRPGQITPEELSKVLGEKVLINTGKVSDKTIPKAPGMKYRHYAPSAPVWV-V 244 Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGK------LKEAAFNLFNYMKIADDSGA 294 V + + + +++ + +L+L K LK+A NLF+ ++ DD + Sbjct: 245 DDVKDFSKISYTSDTAVAALDSVLDTLDLPAENKFSLGKDLKDADHNLFSALRFFDDEAS 304 Query: 295 -SSIAFSSIPNHGLGIAINNRLERAAA 320 +I +A NRL +AAA Sbjct: 305 IKTIYVQGFDEGEQSLAYMNRLNKAAA 331 >gi|330814380|ref|YP_004358619.1| yrdC/Sua5 family protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA [Candidatus Pelagibacter sp. IMCC9063] gi|327487475|gb|AEA81880.1| yrdC/Sua5 family protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA [Candidatus Pelagibacter sp. IMCC9063] Length = 315 Score = 165 bits (417), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 109/310 (35%), Positives = 166/310 (53%), Gaps = 10/310 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L KA + + +G IAIPTETVYGLA ++ +++++Y +KKRP NPLI H S + + Sbjct: 15 LIKASKLIKSGKVIAIPTETVYGLAGNAYRNDSVKKIYSLKKRPKNNPLIVHFSSVKTMN 74 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-KLIET 130 + ++ + LAK F PGPLT +L L + I L R+P T +++ Sbjct: 75 QEVVINEQLIKLAKKFSPGPLTYILPLKKESKISKLVLNKKHQIACRIPNNKTFLAVLKQ 134 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G P+A PSAN S ++S T + K++ I+D + IGLEST++ + ++ Sbjct: 135 SGVPIAAPSANLSNKLSTTRSADV-EKEFGKKLSYILDSKKTSIGLESTVLLLGAS--LK 191 Query: 191 ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALI 250 ILRPG + E + + + ++ + V SPG K HY+P V L P AL+ Sbjct: 192 ILRPGAITKEMIFKVLRKKI-HEVKNQGDIISPGQFKKHYSPGIPVYLNQKKPKPNGALL 250 Query: 251 RFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIA 310 FG IK LSK LKEAA NL+ ++ + G SI+ ++IPN G+G A Sbjct: 251 VFGKQKIKK-----DIFFLSKRSSLKEAASNLYVLLRKIKELGYKSISITNIPNTGIGKA 305 Query: 311 INNRLERAAA 320 IN+R+ RA++ Sbjct: 306 INDRIRRASS 315 >gi|126653458|ref|ZP_01725554.1| hypothetical protein BB14905_19345 [Bacillus sp. B14905] gi|126589814|gb|EAZ83947.1| hypothetical protein BB14905_19345 [Bacillus sp. B14905] Length = 344 Score = 165 bits (417), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 121/349 (34%), Positives = 183/349 (52%), Gaps = 35/349 (10%) Query: 3 IMSITDSNA-----LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 + + DSN +A + L+AG +A PTETVYGL + N A+++++E K RP+ Sbjct: 4 VCKVVDSNVNSQINYTQAVDILNAGEVVAFPTETVYGLGAVATNDVAVKKIFEAKGRPSD 63 Query: 58 NPLICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVL----DLLSTTDIHPLSTANL 112 NPLI HV V + + ++ LFWPGPLTLV+ ++L+ + TA L Sbjct: 64 NPLIVHVGTKEEVTNYIEHISEIAKQCMDLFWPGPLTLVMPAKPNVLAQS-----VTAGL 118 Query: 113 KTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171 T R+P L++ PLA PSANRSG+ S T H+L + IP I+DGG Sbjct: 119 STVGIRMPDHPVALALLQQLQKPLAAPSANRSGKPSPTEAIHVL-DDLGGYIPYILDGGS 177 Query: 172 SKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS-----VELEYCVDETSTPQSPGML 226 + IGLEST+++V E V ILRPGG+ E L+ I ++E ++E TP++PGM Sbjct: 178 TGIGLESTVLDVTHEPPV-ILRPGGITKEMLEAKIGPVIQPTKIEQKLEE--TPKAPGMK 234 Query: 227 KSHYAPRSQVRLRAIHVNP-REALIRFGN----VPIKNIEN-----AIISLNLSKTGKLK 276 +HYAP + V L H EA+ + V + EN A ++ G + Sbjct: 235 YTHYAPNAPVYLINCHDGEVSEAVQQLQQQGHAVALLAPENFQHSKADFYFSVGAEGSKE 294 Query: 277 EAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325 E +L++ ++ D + A+ I ++ G+G AI NRLE+A+ + S Sbjct: 295 EMGASLYHALRACDKTTATVILATTTSAEGVGAAIMNRLEKASGGKWYS 343 >gi|172058702|ref|YP_001815162.1| Sua5/YciO/YrdC/YwlC family protein [Exiguobacterium sibiricum 255-15] gi|171991223|gb|ACB62145.1| Sua5/YciO/YrdC/YwlC family protein [Exiguobacterium sibiricum 255-15] Length = 332 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 111/322 (34%), Positives = 175/322 (54%), Gaps = 15/322 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++A L G +AIPTETVYGLA D+ + TA+RR++ K RP+ NPLI HV+ + K Sbjct: 11 LKEAVRLLQEGEVVAIPTETVYGLAGDATSETAVRRIFAAKGRPSDNPLIVHVASVEQAK 70 Query: 72 KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + + P ++ L FWPG LT++L+ S L TA L T R+P +LIE Sbjct: 71 QFVTHIPDVAAQLMDTFWPGALTIILE--SNGRASSLVTAGLDTIGLRMPDHPLALQLIE 128 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G LA PSANRSG+ S T+ H+ + + I I+DGG + IG+EST+++ V Sbjct: 129 ATGLGLAAPSANRSGKPSPTSSAHV-AHDLSGRIAAIVDGGETGIGVESTVIDCTTNPPV 187 Query: 190 RILRPGGLEIETLKRAI-SVELEYCVD-ETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 ILRPGG+ E ++ I + L+ + + TP++PGM +HYAP + + + A ++ + Sbjct: 188 -ILRPGGVTREQIESVIGNTALDPALSMKDQTPKAPGMKYTHYAPEATLSVVAGDLSFLQ 246 Query: 248 ALI-------RFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300 LI + V + + E+ + ++ AA L++ ++ D + I Sbjct: 247 QLIDEARQNGQKTGVILFDGEDIEADVRCFLGTTMETAAQRLYDCLRRFDQTTVDQIFVR 306 Query: 301 SIPNHGLGIAINNRLERAAAPR 322 + G+G+A+ NRL +AA R Sbjct: 307 DLSEEGVGLAVRNRLHKAAGGR 328 >gi|189183849|ref|YP_001937634.1| Sua5/YciO/YrdC family protein [Orientia tsutsugamushi str. Ikeda] gi|189180620|dbj|BAG40400.1| Sua5/YciO/YrdC family protein [Orientia tsutsugamushi str. Ikeda] Length = 322 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 109/311 (35%), Positives = 164/311 (52%), Gaps = 13/311 (4%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A +F++ G + PTETVYG+ D+ N A + +Y IK RP NPLI HV++I + Sbjct: 15 AAQFIEQGKLVIFPTETVYGIGADATNDNACQNIYRIKNRPTNNPLIIHVNNIQAAQTIG 74 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-KLIETYGH 133 + L++ LA L WPGP++LV+ L + I +TANL T R+P T L++ Sbjct: 75 IFNKLAIKLATL-WPGPISLVVPLNQSAGISRTATANLDTVAIRIPAHKTALTLLQLTQK 133 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 P+A PSAN SG +S T +H I+ G S GLESTI++ ++ + ILR Sbjct: 134 PIAAPSANPSGYLSPTTYQHANIHFQNSPNTFILKGTQSTYGLESTIIDTTTDRPI-ILR 192 Query: 194 PGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFG 253 G + E +K + ++PGM+ HY+P +++RL A + P+E + +G Sbjct: 193 HGFITTEIIKTITGQNPIISKKHNNFLKAPGMMLKHYSPITKIRLNATKLLPKEVGLNYG 252 Query: 254 NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS------SIAFSSIPNHGL 307 N LNLS L AA NL++ + D+ + +IA + IPN G+ Sbjct: 253 ----PNTLTGKYCLNLSPNSNLMNAAANLYHMLHQLDNYAQNPINEVETIAIAQIPNIGI 308 Query: 308 GIAINNRLERA 318 GIAIN++L RA Sbjct: 309 GIAINDKLNRA 319 >gi|154505651|ref|ZP_02042389.1| hypothetical protein RUMGNA_03190 [Ruminococcus gnavus ATCC 29149] gi|153794090|gb|EDN76510.1| hypothetical protein RUMGNA_03190 [Ruminococcus gnavus ATCC 29149] Length = 523 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 114/338 (33%), Positives = 174/338 (51%), Gaps = 33/338 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D +A+R+A E L G +A PTETVYGL ++ + A ++ YE K RP+ NPLI H++D+ Sbjct: 27 DEDAIREAGEILREGGLVAFPTETVYGLGANALDEEAAKKTYEAKGRPSDNPLIVHIADL 86 Query: 68 SMVKK-HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TK 125 + + +V P + LAK FWPGPLT++ + S +T L T R+P + Sbjct: 87 EDLSEITENVPPETELLAKHFWPGPLTMIFEKSSLVPYG--TTGGLDTVAVRMPSDLIAR 144 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 KLI G ++ PSAN SG+ S T +H+ + +I +IIDGG IGLESTI+++ Sbjct: 145 KLILAAGGYVSAPSANTSGRPSPTTAEHVW-EDLNGKIEMIIDGGSVDIGLESTILDMTV 203 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDET-------STPQSPGMLKSHYAPRSQVR- 237 + ILRPG + + L+ I V VDET P++PGM HYAP++++ Sbjct: 204 SPPM-ILRPGAITADMLEEVIGV---VSVDETILGSESSQAPKAPGMKYRHYAPKAKLTI 259 Query: 238 -----------LRAIHVNPREALIRFG----NVPIKNIENAIISLNLSKTGKLKEAAFNL 282 +R + ++ G N ++ + ++ N+ K A NL Sbjct: 260 VEGSLKEEVFAIRQLAYEKSRQGVQVGIIGTNETVEFYTHGLVK-NIGSRENEKTIARNL 318 Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + ++ D+ S I S G+G AI NRLE+AA Sbjct: 319 YRILREFDEEDVSEIYSESFAIQGIGNAIMNRLEKAAG 356 >gi|238927404|ref|ZP_04659164.1| Sua5/YciO/YrdC/YwlC family protein [Selenomonas flueggei ATCC 43531] gi|238884686|gb|EEQ48324.1| Sua5/YciO/YrdC/YwlC family protein [Selenomonas flueggei ATCC 43531] Length = 350 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 114/334 (34%), Positives = 167/334 (50%), Gaps = 28/334 (8%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + G +A PTETVYGL + + A R+YE K RP+ NPLI H++D+SM+ Sbjct: 14 IARAAALIRDGQLVAFPTETVYGLGANGLDAAACARIYEAKGRPSDNPLILHIADLSMLN 73 Query: 72 KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIE 129 + A P + HL F PGP+T+V+ + PL T L T R P ++ I Sbjct: 74 ETAEAVPSTAAHLLTAFAPGPITVVVP--KAVHVPPLVTGGLSTVGVRCPAHDIARRFIR 131 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G P+A PSAN SG+ S T + + + IPLI+DGG G+ESTIV+ E +V Sbjct: 132 AAGVPIAAPSANTSGRPSPTAAAMVY-ADMAGRIPLILDGGSCSFGVESTIVDCTEEGRV 190 Query: 190 RILRPGGLEIETLKRA---ISVELEYCV-DETSTPQSPGMLKSHYAPR----------SQ 235 ILRPG + E + I V ++ + E + P++PGM +HYAPR S Sbjct: 191 TILRPGAVTYEMIAAEFPHIEVRMDTALSSENAAPRAPGMKYTHYAPRVPLTVFAGTGSD 250 Query: 236 VR-------LRAIHVNPREALIRFGN--VPIKNIENAIISLNLSKTGKLKEAAFNLFNYM 286 V LR R ALI +K + A+ + + G A L++ + Sbjct: 251 VTGALREEILRRTAAGERPALIASNETITALKGLIPAVYTYHCGARGNHSAFASCLYDAL 310 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + DD+ A+S+ GLG+AI NRL +A+ Sbjct: 311 RHFDDTAATSLLAEGTGAVGLGLAIMNRLRKASG 344 >gi|254172885|ref|ZP_04879559.1| Sua5/YciO/YrdC/YwlC [Thermococcus sp. AM4] gi|214033041|gb|EEB73869.1| Sua5/YciO/YrdC/YwlC [Thermococcus sp. AM4] Length = 343 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 114/336 (33%), Positives = 175/336 (52%), Gaps = 24/336 (7%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 M LR A + G +A PTETVYGL D+ N A+RR++E K RPA NPLI H Sbjct: 7 MKAGPDERLRVAARLIREGKLVAFPTETVYGLGADALNEKAVRRIFEAKGRPADNPLIIH 66 Query: 64 VSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 +++ + + A P +L LA+ FWPGPLTLVL + ++T L T R+P Sbjct: 67 IAEREWLFELARDIPEKALELAERFWPGPLTLVLP--KGERVPSVTTGGLDTVAVRMPAH 124 Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 +LI G P+A PSAN SG+ S T+ H++ + I I+DGG + IG+EST++ Sbjct: 125 PIALELIRLSGRPVAAPSANISGKPSPTDADHVVDDFYGR-IECIVDGGPTWIGVESTVL 183 Query: 182 NVQCEKKVRILRPGGLEIETLKRAIS-VELEYCVD--ETSTPQSPGMLKSHYAPRSQV-- 236 ++ + V +LRPGGL +E ++ + VE+ V E ++PGM HY+P +QV Sbjct: 184 DLTGDVPV-LLRPGGLPLEEIEMVVGRVEIHPAVKGVEVDLARAPGMKYKHYSPNAQVIV 242 Query: 237 ----------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYM 286 ++ + R +R G + + A +L ++ ++ A N+F + Sbjct: 243 VEGSRNAVREKIDELVREFRGKGLRVGVMATEE-HGADAFFHLGES--TEDVARNVFRAL 299 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 + D +G I + GLG+A+ NRL +AA R Sbjct: 300 RELDKAGVDVIIAEGVEERGLGLAVMNRLRKAAGYR 335 >gi|28378948|ref|NP_785840.1| SUA5 family translation factor [Lactobacillus plantarum WCFS1] gi|300766723|ref|ZP_07076640.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308181158|ref|YP_003925286.1| SUA5 family translation factor [Lactobacillus plantarum subsp. plantarum ST-III] gi|28271785|emb|CAD64691.1| SUA5 family translation factor (putative) [Lactobacillus plantarum WCFS1] gi|300495823|gb|EFK30974.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308046649|gb|ADN99192.1| SUA5 family translation factor [Lactobacillus plantarum subsp. plantarum ST-III] Length = 339 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 116/325 (35%), Positives = 172/325 (52%), Gaps = 24/325 (7%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A L AG +A PTETVYGL D+ N A++++Y K RP+ NPLI HV+D+ V++ A Sbjct: 14 AAALLTAGQLVAFPTETVYGLGADATNVDAVKQVYLAKGRPSDNPLIVHVADVETVERFA 73 Query: 75 SVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 PLS L K FWPGPLT++ L + P T L+TA FR P T LI Sbjct: 74 Q--PLSEAAKKLIKAFWPGPLTMIFKLKPDA-LAPEVTGGLQTAAFRNPDNEATLALIRA 130 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G P+ PSAN SG+ S T +H+L + +I I+D G +K+G+EST++++ +K Sbjct: 131 AGTPIVGPSANTSGKPSPTTAQHVL-HDLRGKIAGILDDGPTKVGVESTVLDLSTDKPA- 188 Query: 191 ILRPGGLEIETLKRAISVELE---YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 ILRPG + E ++R I + ++ + V P++PGM HYAP +QV + + E Sbjct: 189 ILRPGAVTPEAIERVIGMPVQTELHHVGAKEVPKAPGMKYKHYAPNAQVYIVDRSEDWPE 248 Query: 248 ALIRFG--NVPIKNIENAIISLN---------LSKTGKLKEAAFNLFNYMKIAD-DSGAS 295 AL +VP+ + I N S ++ A+ LF ++ D ++ Sbjct: 249 ALAWAAQQDVPMGVMATDDILTNNQIPANCEQFSLGEDIQSASRELFAGLRHFDTETEIK 308 Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320 I + N GLG+A NRL ++A Sbjct: 309 DILCQAFENKGLGLAYMNRLNKSAG 333 >gi|269792803|ref|YP_003317707.1| Sua5/YciO/YrdC/YwlC family protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100438|gb|ACZ19425.1| Sua5/YciO/YrdC/YwlC family protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 330 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 119/323 (36%), Positives = 170/323 (52%), Gaps = 17/323 (5%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 ALR + + +G +A+PTETVYGL D+ NP A RR++++K RP NP+I HVS Sbjct: 14 GALRLGADLILSGRLVAMPTETVYGLGGDATNPEAARRIFQVKGRPLDNPIIVHVSCSEE 73 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLI 128 ++ + PL+ LA+ FWPGPLTLV+ L L T R P ++LI Sbjct: 74 AREVGRMTPLAEDLARAFWPGPLTLVVPSRGVVPREFL--GGLDTVGIRCPSHPVARRLI 131 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E G P+ PSANRSG+ S T+ +L + IPLI+DGG ++GLEST+V+V + Sbjct: 132 EISGVPIGAPSANRSGRPSPTDALTVL-EDLEGLIPLILDGGPCEVGLESTVVDVTGSEP 190 Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL--RAIHVNPR 246 V ILR GG+ + +A+ ++ E +SPG HYAP V L R++ V Sbjct: 191 V-ILRQGGVTERMIVQAVG-RVQVAAGEELLRRSPGTRHRHYAPEVPVLLWDRSVPVQ-- 246 Query: 247 EALIRFGNVPIKNIENAIISLNLS-KTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305 G V I + + S + L+E AF LF + + GAS I + +P Sbjct: 247 ---CPPGRVGYVGISDPPFEVAWSVRPRDLREYAFLLFRTFREMERGGASVI-VAELPER 302 Query: 306 G--LGIAINNRLERAAAPRNQSQ 326 G LG AI +RL RA+ R ++ Sbjct: 303 GEALGDAIRDRLIRASGGRGLAK 325 >gi|295400676|ref|ZP_06810653.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus thermoglucosidasius C56-YS93] gi|312112634|ref|YP_003990950.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus sp. Y4.1MC1] gi|294977257|gb|EFG52858.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus thermoglucosidasius C56-YS93] gi|311217735|gb|ADP76339.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus sp. Y4.1MC1] Length = 351 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 116/327 (35%), Positives = 177/327 (54%), Gaps = 24/327 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A ++L AG +A PTETVYGL ++++ A+ +++ K RP+ NPLI H++ + + Sbjct: 24 IKEAAQWLKAGEVVAFPTETVYGLGANAKDTKAVEKIFAAKGRPSDNPLIVHIAHVKQLD 83 Query: 72 KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + S P ++ L + FWPGPLTL+L I TA L T R+P LIE Sbjct: 84 EIVSDVPRIAGMLIERFWPGPLTLILPKKEGV-ISDKVTAGLSTVAVRMPDHPVALALIE 142 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PLA PSAN SG+ S T H+ + + I I+DGG + IG+EST+++ C V Sbjct: 143 ESGLPLAAPSANISGRPSPTTAAHVF-TDLNGRIVGIVDGGETGIGVESTVLD--CTSDV 199 Query: 190 -RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPRSQVRL-------R 239 ILRPGG+ E L++ I +V ++ + DE TP+SPGM +HYAP+S + + Sbjct: 200 PTILRPGGVTKEALEQVIGNVAVDSALTDERQTPKSPGMKYTHYAPKSPMAIVQGSPAFL 259 Query: 240 AIHVNPREALIRFGNVPIKNIE------NAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293 VN + AL + V + E +A + L L+ A L++ ++ D++ Sbjct: 260 QTLVNQQRALGK--KVGVMTTEENCLFYDADVVLTCGSRHDLRTVASRLYDTLRQFDETD 317 Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAA 320 I S P G+G AI NRL +AA Sbjct: 318 VDFIYSESFPAEGIGAAIMNRLRKAAG 344 >gi|304438487|ref|ZP_07398427.1| Sua5/YciO/YrdC/YwlC family protein [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368570|gb|EFM22255.1| Sua5/YciO/YrdC/YwlC family protein [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 350 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 116/347 (33%), Positives = 172/347 (49%), Gaps = 36/347 (10%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +I+ T + +A + G +A PTETVYGL + + A R+YE K RP+ NPLI Sbjct: 4 EILRPTSTEHFARAAALIRDGQLVAFPTETVYGLGANGLDAAACARIYEAKGRPSDNPLI 63 Query: 62 CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 H++D+SM+ + A V P + HL F PGP+T+++ I PL T L T R P Sbjct: 64 LHIADLSMLHEAAEDVPPAAAHLLTAFAPGPITVIVP--KAAHIPPLVTGGLATVGVRCP 121 Query: 121 C-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 ++LI G P+A PSAN SG+ S T + ++ + IPLI+DGG G+EST Sbjct: 122 AHDVARRLIRAAGMPIAAPSANISGRPSPTTAA-MTAADMMGRIPLILDGGSCSWGVEST 180 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEY--------CVDETSTPQSPGMLKSHYA 231 IV+ E + ILRPG + E IS EL + V + P++PGM +HYA Sbjct: 181 IVDCTEEGCITILRPGAVTPEM----ISAELPHLTVRMDAALVSADTAPRAPGMKYTHYA 236 Query: 232 PRSQVRL-----------------RAIHVNPREALIRFGN--VPIKNIENAIISLNLSKT 272 PR + + R + R ALI + + + + A + N Sbjct: 237 PRVPLTVFAGAGTDVVRALRIEIERRMAAGERPALIASNDTIMALSGLLPAAYTYNCGAR 296 Query: 273 GKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 G A L++ ++ DD+ +S+ + GLGIAI NRL +A+ Sbjct: 297 GNQSTLAACLYDALRHFDDTDVTSLLAEGAGSVGLGIAIMNRLRKAS 343 >gi|323694150|ref|ZP_08108329.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium symbiosum WAL-14673] gi|323501867|gb|EGB17750.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium symbiosum WAL-14673] Length = 354 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 121/344 (35%), Positives = 174/344 (50%), Gaps = 28/344 (8%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 + + L +A E L G +A PTETVYGL ++ + A R++YE K RP+ NPLI H Sbjct: 14 FTAKEKQYLEEAAEILKNGGLVAFPTETVYGLGANALDEKAARKIYEAKGRPSDNPLIAH 73 Query: 64 VSDISMVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPC 121 V+D ++ S P + + LAK FWPGP+TL+ +D+ PL +T L T R+P Sbjct: 74 VADFEGLRPLVSRIPENGIKLAKAFWPGPMTLI---FPKSDLVPLGTTGGLDTVAVRMPS 130 Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 ++LI G P+A PSAN SG+ S T +H+ + I +I+DGG IG+ESTI Sbjct: 131 DPVARELIRLAGVPVAAPSANTSGRPSPTRAEHVF-QDMNGRIEMILDGGPVGIGVESTI 189 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAIS-VELEYC----VDETSTPQSPGMLKSHYAPRSQ 235 V+V E V +LRPG + +E L A+ V ++ V P++PGM HYAP + Sbjct: 190 VDVTEEIPV-MLRPGAVTMEMLHEAVGEVRIDPAILGPVSPGLKPKAPGMKYRHYAPNAD 248 Query: 236 VRLR---------AIHVNPREALIRFGNVPI------KNIENAIISLNLSKTGKLKEAAF 280 + L I+ E L V I + + ++ + K + A Sbjct: 249 LTLVEGEEEKVVCEINRLAAEKLKEGYKVGIICTDETRECYGGGLVRSIGERAKEETVAH 308 Query: 281 NLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQ 324 NL+ ++ DD GA I P LG AI NRL +AA R Q Sbjct: 309 NLYALLREFDDLGAQYIYSEGFPEDHLGQAIMNRLSKAAGYRIQ 352 >gi|212640537|ref|YP_002317057.1| putative translation factor (SUA5) [Anoxybacillus flavithermus WK1] gi|212562017|gb|ACJ35072.1| Putative translation factor (SUA5) [Anoxybacillus flavithermus WK1] Length = 355 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 108/332 (32%), Positives = 175/332 (52%), Gaps = 21/332 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A +L G +A PTETVYGL ++ + A+ ++ K RP+ NPLI H++ + Sbjct: 29 VTQAAAYLQRGELVAFPTETVYGLGANAMSTAAVENIFVAKGRPSDNPLIVHIATTEQLH 88 Query: 72 KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 A + P++ L + FWPGPLTLVL + P TA L T R+P LI+ Sbjct: 89 DIACDIPPVAYTLIEHFWPGPLTLVLPKKEV--VSPRVTAGLNTVAVRMPNHPIALALIK 146 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G P+A PSANRSG+ S T KH+L + I I+DGG + +G+EST+++ C + Sbjct: 147 ASGLPIAAPSANRSGRPSPTTAKHVL-DDLNGRIAAIVDGGPTGVGVESTVID--CTTTI 203 Query: 190 -RILRPGGLEIETLKRAIS-VELEYC-VDETSTPQSPGMLKSHYAPR--------SQVRL 238 ILRPGG+ E +++ I V+++ V++ + P+SPGM +HYAP+ S L Sbjct: 204 PTILRPGGVTKEDIEQVIGVVDIDRALVEKEAVPKSPGMKYTHYAPKAPLVVVHGSSTFL 263 Query: 239 RAIHVNPREALIRFGNVPI---KNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 + + R + G + ++ A + + + L+ A L++ ++ D + Sbjct: 264 QQLVTEKRANGFKVGVLTTEEGRHTYEADVVIPCGRRDDLRTVAQQLYDALRTFDQTNVD 323 Query: 296 SIAFSSIPNHGLGIAINNRLERAAAPRNQSQR 327 I + PN G+G+AI NRL +AA ++ Sbjct: 324 MIYSEAFPNEGIGVAIMNRLLKAAGHEQMMEK 355 >gi|194468252|ref|ZP_03074238.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus reuteri 100-23] gi|194453105|gb|EDX42003.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus reuteri 100-23] Length = 342 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 109/325 (33%), Positives = 176/325 (54%), Gaps = 19/325 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + G +A PTETVYGL D+ N A++ +Y K RP+ NPLI HV+ I+MV+ Sbjct: 11 IAQAAAAIKRGELVAFPTETVYGLGADATNEKAVKNVYLAKGRPSDNPLIVHVNSIAMVE 70 Query: 72 KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129 K+A+ P + L FWPG LT++L + + T LKT FR P C T LIE Sbjct: 71 KYAAEIPDNARKLMDAFWPGSLTIILKIKKGA-LSKTVTGGLKTVAFRYPDCQPTLDLIE 129 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G P+ PSAN SG+ S T +H+ + +I I+D G +++G+EST++++ + V Sbjct: 130 EAGVPMVGPSANTSGKPSPTTAQHVY-HDLHGKIAGIVDNGPTRVGVESTVLDMSTDHPV 188 Query: 190 RILRPGGLEIETLKRAI-SVEL-EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 ILRPG + + +++ I S++L + V + TP++PGM HYAP++QV + + + Sbjct: 189 -ILRPGAVTKKDIEKVIGSIDLNHHKVGKNETPKAPGMKYKHYAPKAQVYIVDEDTDWDK 247 Query: 248 ALIRFGNVPI--------KNIENAIISLN---LSKTGKLKEAAFNLFNYMKIADDS-GAS 295 + P K ++ ++ +N S +++A+ LF+ ++ DD Sbjct: 248 VVEWIRQQPFDVGMMAEEKVLQQEVLPMNAIQFSLGKNVQDASARLFDGLRQFDDQPNIK 307 Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320 I + P H LG A NRL ++A Sbjct: 308 VIVTQAFPAHDLGGAYMNRLNKSAG 332 >gi|227529625|ref|ZP_03959674.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus vaginalis ATCC 49540] gi|227350415|gb|EEJ40706.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus vaginalis ATCC 49540] Length = 351 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 109/327 (33%), Positives = 176/327 (53%), Gaps = 19/327 (5%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + + +A + + G +A PTETVYGL D+ N A++ +Y K RP+ NPLI HV+ + M Sbjct: 21 DEINQAAKAIQDGKLVAFPTETVYGLGADATNEAAVKNVYLAKGRPSDNPLIVHVASVEM 80 Query: 70 VKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 V+++ASV P + L K FWPG LT++L++ + T L T FR P C T L Sbjct: 81 VERYASVIPDNARKLMKKFWPGSLTIILNIKKGV-LSKTVTGGLSTVAFRFPDCQPTLDL 139 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I+ G P+ PSAN SG+ S T +H+ + +I IID G +++G+EST++++ + Sbjct: 140 IKKAGVPIVGPSANTSGKPSPTTAQHVY-HDLHGKIAGIIDNGPTRVGVESTVLDMSTDH 198 Query: 188 KVRILRPGGLEIETLKRAI-SVEL-EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245 V ILRPG + ++ I S++L + V + TP++PGM HYAP +QV + + Sbjct: 199 PV-ILRPGAVTKHQIEEVIGSIDLNHHHVGKNETPKAPGMKYKHYAPNAQVYIVDEGTDW 257 Query: 246 REALIRFGNVPI--------KNIENAIISLN---LSKTGKLKEAAFNLFNYMKIADDS-G 293 ++ + P K ++ A + +N S + +A+ LF+ ++ DD Sbjct: 258 KQVVDWIKQQPFDVGMMAEEKILQQATLPMNAIQFSLGKNVADASARLFDGLRQFDDQPN 317 Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAA 320 +I + P LG A NRL ++A Sbjct: 318 VKAIVTQAFPAKDLGRAYMNRLNKSAG 344 >gi|294055966|ref|YP_003549624.1| Sua5/YciO/YrdC/YwlC family protein [Coraliomargarita akajimensis DSM 45221] gi|293615299|gb|ADE55454.1| Sua5/YciO/YrdC/YwlC family protein [Coraliomargarita akajimensis DSM 45221] Length = 332 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 109/322 (33%), Positives = 169/322 (52%), Gaps = 13/322 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 ++ E L AG +A+PTETVYGLA ++ + + R+++E+K RP ++PLI H I Sbjct: 15 IQHCAELLSAGELVAVPTETVYGLAGNALDEDSARKIFEVKGRPFIDPLISHFHSIEAAT 74 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 H AK FWPG LT+V + ST I + TA L +A RVP +KL+ Sbjct: 75 SHIEWSDSIQRAAKAFWPGALTIVANKQST--IPDIVTAGLPSAAIRVPGHPVFRKLLSK 132 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 PLA PSAN G +S T +H+ ++ + I+D G G+ESTI++++ E R Sbjct: 133 IDFPLAAPSANPFGYVSPTKAEHV-ERTLGTRLRAILDAGPCLHGVESTILDLRNESAPR 191 Query: 191 ILRPGGLEIETLKRAISVELEYCVD---ETSTPQSPGMLKSHYAPRSQVRLRA-----IH 242 ILR G + E++ AI + + + S+ +PG+L HY+P + V L A Sbjct: 192 ILRQGPISSESISDAIGRTVSETTNASRDDSSQAAPGLLSQHYSPHTPVSLYAPNSLSAE 251 Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302 P + + F P ++ + S+ G E A NLF+ ++ D S + + Sbjct: 252 QFPADCAVVFNCKPTAAHLHS-NTFWFSQNGDTCEVAHNLFDLIQRLDQQNFSHLHIETC 310 Query: 303 PNHGLGIAINNRLERAAAPRNQ 324 P+ G+G A+N+RL+RAAA R+Q Sbjct: 311 PDIGIGKAVNDRLKRAAAKRSQ 332 >gi|229917062|ref|YP_002885708.1| Sua5/YciO/YrdC/YwlC family protein [Exiguobacterium sp. AT1b] gi|229468491|gb|ACQ70263.1| Sua5/YciO/YrdC/YwlC family protein [Exiguobacterium sp. AT1b] Length = 336 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 117/328 (35%), Positives = 181/328 (55%), Gaps = 23/328 (7%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 +SN + + L AG IA+PTETVYGLA D+ N AIR+++E K RP+ NPLI H++ I Sbjct: 7 NSNEIEEGVRLLQAGEIIAMPTETVYGLAGDAMNDVAIRKIFEAKGRPSDNPLIVHIASI 66 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK- 125 S+ P++ L FWPG LT++L S L TA L + R+P Sbjct: 67 EQTSLFVDSIPPVAKRLMDAFWPGALTIILP--SNGRASSLVTAGLDSIGLRMPNHPAAL 124 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +LI G LA PSANRSG+ S T +H+ + + I I+DGG + IG+EST+V+ Sbjct: 125 ELIRKSGLGLAAPSANRSGRPSPTTAQHV-ADDLNGRIAGIVDGGPTGIGVESTVVDCTG 183 Query: 186 EKKVRILRPGGL---EIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL---- 238 + V ILRPGG+ E+E + ++++ DE + P+SPGM +HYAP + V L Sbjct: 184 D-TVTILRPGGVTREEMEAVIGPVALDANLSNDE-AAPRSPGMKYTHYAPTAPVFLVDGT 241 Query: 239 -----RAIHVNPREALIRFGNVPI-KNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDS 292 R I ++A +R G + +N A ++ +L + ++ AA L++ ++ D++ Sbjct: 242 REDLERVIEER-KQAGLRIGALVFDENPTPAEVTYSLGTS--MEVAAQRLYDALRRFDET 298 Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAA 320 I ++I G+ +A+ NRL +AA Sbjct: 299 DVDEIYVNTIEPVGVALAVYNRLYKAAG 326 >gi|254557153|ref|YP_003063570.1| SUA5 family translation factor [Lactobacillus plantarum JDM1] gi|254046080|gb|ACT62873.1| SUA5 family translation factor [Lactobacillus plantarum JDM1] Length = 339 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 115/325 (35%), Positives = 172/325 (52%), Gaps = 24/325 (7%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A L AG +A PTETVYGL D+ N A++++Y K RP+ NPLI HV+D+ V++ A Sbjct: 14 AAALLTAGQLVAFPTETVYGLGADATNVDAVKQVYLAKGRPSDNPLIVHVADVETVERFA 73 Query: 75 SVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 PLS L K FWPGPLT++ L + P T L+TA FR P T LI Sbjct: 74 Q--PLSEAAKKLIKAFWPGPLTMIFKLKPDA-LAPEVTGGLQTAAFRNPDNEATLALIRA 130 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G P+ PSAN SG+ S T +H+L + +I I+D G +K+G+EST++++ ++ Sbjct: 131 AGTPIVGPSANTSGKPSPTTAQHVL-HDLRGKIAGILDDGPTKVGVESTVLDLSTDQPA- 188 Query: 191 ILRPGGLEIETLKRAISVELE---YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 ILRPG + E ++R I + ++ + V P++PGM HYAP +QV + + E Sbjct: 189 ILRPGAVTPEAIERVIGMPVQTELHHVGAKEVPKAPGMKYKHYAPNAQVYIVDRSEDWPE 248 Query: 248 ALIRFG--NVPIKNIENAIISLN---------LSKTGKLKEAAFNLFNYMKIAD-DSGAS 295 AL +VP+ + I N S ++ A+ LF ++ D ++ Sbjct: 249 ALAWAAQQDVPMGVMATDDILTNNQIPDNCEQFSLGEDIQSASRELFAGLRHFDTETEIK 308 Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320 I + N GLG+A NRL ++A Sbjct: 309 DILCQAFENKGLGLAYMNRLNKSAG 333 >gi|323485388|ref|ZP_08090736.1| hypothetical protein HMPREF9474_02487 [Clostridium symbiosum WAL-14163] gi|323401251|gb|EGA93601.1| hypothetical protein HMPREF9474_02487 [Clostridium symbiosum WAL-14163] Length = 354 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 116/346 (33%), Positives = 173/346 (50%), Gaps = 32/346 (9%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 + + L +A E L G +A PTETVYGL ++ + A R++YE K RP+ NPLI H Sbjct: 14 FTAKEKKYLEEAAEILKNGGLVAFPTETVYGLGANALDEKAARKIYEAKGRPSDNPLIAH 73 Query: 64 VSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPC 121 V+D ++ S P + LAK FWPGP+TL+ +D+ PL +T L T R+P Sbjct: 74 VADFEGLRPLVSRIPENGIKLAKAFWPGPMTLI---FPKSDLVPLGTTGGLDTVAVRMPS 130 Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 ++LI G P+A PSAN SG+ S T +H+ + I +I+DGG IG+ESTI Sbjct: 131 DPVARELIRLAGVPVAAPSANTSGRPSPTRAEHVF-QDMNGRIEMILDGGPVGIGVESTI 189 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAIS-VELEYC----VDETSTPQSPGMLKSHYAPRSQ 235 V+V E V +LRPG + +E L A+ V ++ V P++PGM HYAP + Sbjct: 190 VDVTEEIPV-MLRPGAVTMEMLHEAVGEVRIDPAILGPVSPGLKPKAPGMKYRHYAPNAD 248 Query: 236 VRLRAIHVNPREALIRFGNVPIKNIENAI-----------------ISLNLSKTGKLKEA 278 + L + + + + + ++ + ++ + K + Sbjct: 249 LTL--VEGEEEKVVCEIKRLAAEKLKEGYKVGIICTDETRECYGGGLVRSIGERAKEETV 306 Query: 279 AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQ 324 A NL+ ++ DD GA I P LG AI NRL +AA R Q Sbjct: 307 AHNLYALLREFDDLGAQYIYSEGFPEDHLGQAIMNRLSKAAGYRIQ 352 >gi|52787618|ref|YP_093447.1| YwlC [Bacillus licheniformis ATCC 14580] gi|52350120|gb|AAU42754.1| YwlC [Bacillus licheniformis ATCC 14580] Length = 349 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 117/335 (34%), Positives = 175/335 (52%), Gaps = 26/335 (7%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 T+ + +A L +A PTETVYGL ++++ A+ ++YE K RP+ NPLI H+++ Sbjct: 18 TNCPQIAQAARLLQQNETVAFPTETVYGLGANAKHSEAVAKIYEAKGRPSDNPLIVHIAE 77 Query: 67 ISMVKKHASVD-PLSLHLAKLFWPGPLTLVL----DLLSTTDIHPLSTANLKTACFRVPC 121 I + + A VD P + L K FWPGPLTLVL +LST TA L T R+P Sbjct: 78 IEQLAEFAEVDSPQAEMLMKRFWPGPLTLVLPCKPGVLSTR-----VTAGLDTVAVRMPD 132 Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 +LI G P+A PSAN SG+ S T +H++ + + I ++DGG + +G+EST+ Sbjct: 133 HPVALELIRQAGVPVAAPSANLSGKPSPTKAEHVV-NDLNGRIAGVVDGGPTGVGVESTV 191 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQVRL 238 V+ E V ILRPGG+ E L+ A L + DE P SPGM +HYAP + + + Sbjct: 192 VSCTGEIPV-ILRPGGVTKEQLEEAAGPVLIDQGLTDEKKAPMSPGMKYTHYAPEAPLAI 250 Query: 239 RAIHVNPREALI-RFGNVPIK----------NIENAIISLNLSKTGKLKEAAFNLFNYMK 287 V + LI ++ +K ++ A + +L+ A L++ ++ Sbjct: 251 VNGGVEDIQRLIDQYQKDGMKVGVLTTEERADVYQADAVRICGRRDRLETVAAGLYDVLR 310 Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 D+ I S P G+G AI NRL +AA R Sbjct: 311 SFDEERLDFIFAESFPEEGVGRAIMNRLLKAAGHR 345 >gi|52082226|ref|YP_081017.1| hypothetical protein BL03986 [Bacillus licheniformis ATCC 14580] gi|319648100|ref|ZP_08002317.1| YwlC protein [Bacillus sp. BT1B_CT2] gi|52005437|gb|AAU25379.1| conserved protein YwlC [Bacillus licheniformis ATCC 14580] gi|317389735|gb|EFV70545.1| YwlC protein [Bacillus sp. BT1B_CT2] Length = 347 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 117/335 (34%), Positives = 175/335 (52%), Gaps = 26/335 (7%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 T+ + +A L +A PTETVYGL ++++ A+ ++YE K RP+ NPLI H+++ Sbjct: 16 TNCPQIAQAARLLQQNETVAFPTETVYGLGANAKHSEAVAKIYEAKGRPSDNPLIVHIAE 75 Query: 67 ISMVKKHASVD-PLSLHLAKLFWPGPLTLVL----DLLSTTDIHPLSTANLKTACFRVPC 121 I + + A VD P + L K FWPGPLTLVL +LST TA L T R+P Sbjct: 76 IEQLAEFAEVDSPQAEMLMKRFWPGPLTLVLPCKPGVLSTR-----VTAGLDTVAVRMPD 130 Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 +LI G P+A PSAN SG+ S T +H++ + + I ++DGG + +G+EST+ Sbjct: 131 HPVALELIRQAGVPVAAPSANLSGKPSPTKAEHVV-NDLNGRIAGVVDGGPTGVGVESTV 189 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQVRL 238 V+ E V ILRPGG+ E L+ A L + DE P SPGM +HYAP + + + Sbjct: 190 VSCTGEIPV-ILRPGGVTKEQLEEAAGPVLIDQGLTDEKKAPMSPGMKYTHYAPEAPLAI 248 Query: 239 RAIHVNPREALI-RFGNVPIK----------NIENAIISLNLSKTGKLKEAAFNLFNYMK 287 V + LI ++ +K ++ A + +L+ A L++ ++ Sbjct: 249 VNGGVEDIQRLIDQYQKDGMKVGVLTTEERADVYQADAVRICGRRDRLETVAAGLYDVLR 308 Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 D+ I S P G+G AI NRL +AA R Sbjct: 309 SFDEERLDFIFAESFPEEGVGRAIMNRLLKAAGHR 343 >gi|315304791|ref|ZP_07874955.1| protein Sua5 [Listeria ivanovii FSL F6-596] gi|313626839|gb|EFR95808.1| protein Sua5 [Listeria ivanovii FSL F6-596] Length = 345 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 121/336 (36%), Positives = 176/336 (52%), Gaps = 19/336 (5%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 ++ + KA + L G +A PTETVYGL D+ N AI+++Y K RP+ NPLI H++ Sbjct: 13 SNKSVYEKAAKLLQNGECVAFPTETVYGLGADATNQAAIKKIYMAKGRPSDNPLIVHIAS 72 Query: 67 ISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 + AS ++ L + FWPGPLT++L L T +S A L T R+P + Sbjct: 73 REQMDIFVASYPQKAMQLMENFWPGPLTVILPLKKDTLASNVS-AGLSTVGVRMPEHPVS 131 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 LI+ G P+A PSANRSG+ S T H++ + EI IIDGG + +G+EST+++ Sbjct: 132 LALIKEAGLPVAAPSANRSGKPSPTTASHVI-EDLDGEIAGIIDGGETGVGVESTVIDCS 190 Query: 185 CEKKVRILRPGGLEIETLKRAIS-VELEYC-VDETSTPQSPGMLKSHYAPRSQVRL---- 238 E V ILRPGG+ E +++ I VEL ET P++PGM +HYAP++ V L Sbjct: 191 AEIPV-ILRPGGITKEQIEQIIGPVELATNDTKETEKPKAPGMKYTHYAPKAPVYLIEGS 249 Query: 239 ---RAIHVNPREAL-IRFGNVPIKN-IENAIISLNLSKTG---KLKEAAFNLFNYMKIAD 290 +N EA + G + + IE + + TG + E A L+ ++ D Sbjct: 250 KEFWQKEINKAEAAHKKIGILATEELIEGLTTNAIIQSTGSISSMAEIANQLYKGLRAFD 309 Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326 I P LG A+ NRLE+AA R S+ Sbjct: 310 HVEVDMIFAEVYPETELGAAVMNRLEKAAGNRRISE 345 >gi|302527583|ref|ZP_07279925.1| Sua5/YciO/YrdC/YwlC protein [Streptomyces sp. AA4] gi|302436478|gb|EFL08294.1| Sua5/YciO/YrdC/YwlC protein [Streptomyces sp. AA4] Length = 338 Score = 163 bits (412), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 114/329 (34%), Positives = 170/329 (51%), Gaps = 30/329 (9%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + KA L AG +A PTETVYGL D+ +P A+ R+Y+ K RP+ +PLI H++ + Sbjct: 23 IEKAAGVLRAGGLVAFPTETVYGLGADASDPAAVSRIYQAKGRPSTHPLIVHLAGAGFLD 82 Query: 72 KHASV--DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 +P L LA+ FWPGPLTLVL + +T L+T RVP L+ Sbjct: 83 GWVEKLPEPARL-LAERFWPGPLTLVLR--RGPRVSSAATGGLETVGVRVPDHPVALALL 139 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 +G A PSANR G +S T +H+ + + + ++DGG ++G+ESTIV+ + Sbjct: 140 SAFGGGAAAPSANRFGSVSPTTAEHV-RAELGDAVDFVLDGGPCQVGVESTIVDATSD-T 197 Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248 + +LRPGG+ E L+ + L+ V TS + PG SHYAPR++V L V P + Sbjct: 198 LSVLRPGGVPREDLEAVLGGPLD--VPSTSPIRVPGQHPSHYAPRAKVVL----VEPDQV 251 Query: 249 LIRFGNVPIKNIENAI-ISLNLSKTGKLKEA-------------AFNLFNYMKIADDSGA 294 + + + + + + + L S+ G EA A L+ +++ D G Sbjct: 252 VAEAAHA--RKLGHRVGVFLPPSQNGGAPEAHAVVAVPESTAEYARGLYGFLRELDRQGC 309 Query: 295 SSIAFSSIPNHGLGIAINNRLERAAAPRN 323 I S GLG+AI NRL RAA PR+ Sbjct: 310 DLIVASLPEETGLGLAIANRLRRAAGPRS 338 >gi|148284357|ref|YP_001248447.1| putative translation factor protein [Orientia tsutsugamushi str. Boryong] gi|146739796|emb|CAM79671.1| putative translation factor protein [Orientia tsutsugamushi str. Boryong] Length = 322 Score = 163 bits (412), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 109/313 (34%), Positives = 164/313 (52%), Gaps = 13/313 (4%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A +F++ G + PTETVYG+ D+ N A + +Y+IK RP NPLI HVS+I + Sbjct: 15 AAQFIEQGKLVIFPTETVYGIGADATNDNACQSIYKIKNRPMNNPLIIHVSNIQAAQTIG 74 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGH 133 + L++ LA L WPGP++LV+ L + I +TANL T R+P L++ Sbjct: 75 IFNNLAIKLATL-WPGPISLVVPLNQSAGISRTATANLDTVAIRIPSHKVALMLLQLTQK 133 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 P+A PSAN SG +S T +H I+ G S GLESTI++ ++ ILR Sbjct: 134 PIAAPSANPSGYLSPTTYQHANIHFQNSPDIFILKGAQSTYGLESTIIDTTADRPT-ILR 192 Query: 194 PGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFG 253 G + E +K ++PGM+ HY+P +++RL A + P+E + +G Sbjct: 193 HGFITTEIIKTITGQNPIIAEKHNKLLKAPGMMLKHYSPITKIRLNATKLLPKEVGLNYG 252 Query: 254 NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS------SIAFSSIPNHGL 307 N LNLS L AA NL++ + D+ + +IA + IPN G+ Sbjct: 253 ----PNTLTGKYCLNLSPNSNLMNAAANLYHMLHQLDNYAQNPINEVETIAIAQIPNIGI 308 Query: 308 GIAINNRLERAAA 320 GIAIN++L RA++ Sbjct: 309 GIAINDKLNRASS 321 >gi|332653079|ref|ZP_08418824.1| Sua5/YciO/YrdC/YwlC family protein [Ruminococcaceae bacterium D16] gi|332518225|gb|EGJ47828.1| Sua5/YciO/YrdC/YwlC family protein [Ruminococcaceae bacterium D16] Length = 341 Score = 163 bits (412), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 115/345 (33%), Positives = 178/345 (51%), Gaps = 35/345 (10%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M +T+ + A D GL + IPTETVYGL + N A+ ++E K RP NPL Sbjct: 1 MNTKRLTEHDIDEAAAILRDGGL-LGIPTETVYGLGANGLNEEAVAHIFEAKGRPQDNPL 59 Query: 61 ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFR 118 I H+ D S ++++ PL+ + LA+ +WPGP+T++ L DI P + TA L T R Sbjct: 60 ILHIPDASWLERYCKDIPLTAYQLAEAYWPGPMTMI---LKRKDIVPDAVTAGLDTVGMR 116 Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 P +++I G P+A PS N SG+ S T +H+L K I I+DGG +G+E Sbjct: 117 CPAHPLCREIIAASGVPVAAPSGNTSGRPSPTTAQHMLEDMDGK-IDAIVDGGSCSVGVE 175 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETST--------PQSPGMLKSH 229 STI+++ E R+LRPGG+ +E L+ + E VD T P++PGM H Sbjct: 176 STIIDL-TETPARLLRPGGITLEQLEAVLG---EVAVDPAVTRLMGAGEQPKAPGMKYRH 231 Query: 230 YAPRSQVRLR-----------AIHVNPREALIRFGN-VPI--KNIENAIISLNLSKTGKL 275 YAP++ V + A H + +I F +P+ + E + ++L G Sbjct: 232 YAPKAPVTVVTGDPKKSAEYIASHAGAEDGIICFDEFLPLFTRRSETRPV-MDLGPAGDK 290 Query: 276 KEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 +E A ++F+ ++ D + +I G+G+AI NRL +AA Sbjct: 291 EEQARHIFDALRSFDHTSVPAIWAQCPDTTGIGLAIANRLNKAAG 335 >gi|324329274|gb|ADY24534.1| sua5/yciO/yrdC/ywlC family protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 346 Score = 163 bits (412), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 116/325 (35%), Positives = 171/325 (52%), Gaps = 21/325 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++A + L IA PTETVYGL ++ N AI +++E K RP+ NPLI H+ S + Sbjct: 21 LQEAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLD 80 Query: 72 KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P++ L + FWPGPLT++L I TA L T R+P LIE Sbjct: 81 GIVKEIPPVAEQLMEHFWPGPLTIILP--RKEGISEKVTAGLNTVGVRMPDHPVALALIE 138 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+A PSANRSG+ S T H+ + ++I I+DGG + +G+EST+++ C V Sbjct: 139 EANVPVAAPSANRSGRPSPTLASHVY-EDLNEKIAGIVDGGATGVGVESTVID--CTSAV 195 Query: 190 -RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPR--------SQVRL 238 ILRPGG+ E L+ I +V L+ + DE P+SPGM +HYAP+ S+ + Sbjct: 196 PTILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255 Query: 239 RAIHVNPREALIRFG---NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 + I +E + G +++ NA + L+ L A L++ ++ D S Sbjct: 256 QLIVDKKKEEGFKVGVLTTEEYQHVYNADVVLSCGVRSDLASVATKLYDVLRTFDASEVD 315 Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320 I S PN G+G AI NRL +AA Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAG 340 >gi|46908713|ref|YP_015102.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes serotype 4b str. F2365] gi|47094309|ref|ZP_00232012.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes str. 4b H7858] gi|226225089|ref|YP_002759196.1| yeast translation initiation protein [Listeria monocytogenes Clip81459] gi|254825336|ref|ZP_05230337.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes FSL J1-194] gi|254853930|ref|ZP_05243278.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes FSL R2-503] gi|254932217|ref|ZP_05265576.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes HPB2262] gi|254993431|ref|ZP_05275621.1| yeast translation initiation protein [Listeria monocytogenes FSL J2-064] gi|255519763|ref|ZP_05387000.1| yeast translation initiation protein [Listeria monocytogenes FSL J1-175] gi|300764959|ref|ZP_07074947.1| hypothetical protein LMHG_11591 [Listeria monocytogenes FSL N1-017] gi|46881985|gb|AAT05279.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes serotype 4b str. F2365] gi|47017319|gb|EAL08149.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes str. 4b H7858] gi|225877551|emb|CAS06265.1| Putative yeast translation initiation protein [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258607318|gb|EEW19926.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes FSL R2-503] gi|293583772|gb|EFF95804.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes HPB2262] gi|293594579|gb|EFG02340.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes FSL J1-194] gi|300514259|gb|EFK41318.1| hypothetical protein LMHG_11591 [Listeria monocytogenes FSL N1-017] gi|328465145|gb|EGF36413.1| translation initiation protein [Listeria monocytogenes 1816] gi|328471149|gb|EGF42053.1| translation initiation protein [Listeria monocytogenes 220] gi|332312971|gb|EGJ26066.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes str. Scott A] Length = 345 Score = 163 bits (412), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 118/334 (35%), Positives = 174/334 (52%), Gaps = 33/334 (9%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 ++A + L +G +A PTETVYGL D+ N A++++YE K RP+ NPLI H++ + Sbjct: 18 FQEAAKLLRSGECVAFPTETVYGLGADATNQAAVQKIYEAKGRPSDNPLIVHIARREQMD 77 Query: 72 KHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P+ ++ L + FWPGPLT++L L + +S A L T R+P + LI+ Sbjct: 78 PFVASYPVKAIQLMEKFWPGPLTVILPLKKDSLATNVS-AGLSTVGVRMPEHPVSLALID 136 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+A PSANRSG+ S T H++ + +I IIDGG + +GLEST+++ + V Sbjct: 137 AANIPVAAPSANRSGKPSPTTASHVI-EDLDGKIAGIIDGGATGVGLESTVIDCSLDIPV 195 Query: 190 RILRPGGLEIETLKRAIS-VELEY-CVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 ILRPGG+ E +++ I V++ ET P++PGM +HYAP++ V L E Sbjct: 196 -ILRPGGVTKEQIEQIIGPVDIATNNTKETEKPKAPGMKYTHYAPKAPVYL-------IE 247 Query: 248 ALIRFGNVPIKNIENA------------IISLNLSKT-------GKLKEAAFNLFNYMKI 288 I+F I E A I LN S T L E A +L+ ++ Sbjct: 248 GSIQFWQSEINKAEAANKKLGILATKELINQLNTSGTIEITGSINALDEIATSLYKGLRA 307 Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 D + I P LG AI NRLE+AA R Sbjct: 308 FDHADVDVIFAEVYPETELGAAIMNRLEKAAGNR 341 >gi|326792742|ref|YP_004310563.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium lentocellum DSM 5427] gi|326543506|gb|ADZ85365.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium lentocellum DSM 5427] Length = 344 Score = 162 bits (411), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 114/346 (32%), Positives = 182/346 (52%), Gaps = 34/346 (9%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ ITD+ AL +A L G +A PTETVYGL ++ N A++ +Y+ K RP+ NPL Sbjct: 1 MKTSIITDTTALLEAANILQQGGLVASPTETVYGLCANALNENAVKNIYKAKGRPSDNPL 60 Query: 61 ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I H++D+ M+ V P++ L + FWPGPLTL+ +++ + + T L T R Sbjct: 61 IVHIADLEMLSPLVEEVPPMARTLMEHFWPGPLTLIFK--ASSLVPKVVTGGLDTVAIRF 118 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P ++LI+ G PLA PSAN SG+ S TN ++ + +I II G SK G+ES Sbjct: 119 PSHPIIQQLIKASGLPLAAPSANTSGKPSPTNASRVI-EDLEGKIDAIIVGDSSKYGVES 177 Query: 179 TIVNVQCEKKVRILRPGGLE---IETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPR 233 T+V+ E ILRPGG+ IE + +++++ + + + E P++PGM HY+P Sbjct: 178 TVVDTTGE-VATILRPGGITAEMIEAVLGSVTIDPAISHALKEGELPKAPGMKYIHYSPN 236 Query: 234 SQVRLRAIHVNPREALI----------------RFGNVPIKNIEN---AIISLNLSKTGK 274 ++V I V+ E+L+ + G + + A + ++ T Sbjct: 237 AEV----IIVDGEESLVISKMNELIVSAHSQGKKVGVLATDETKEHFKADLVISAGTTKN 292 Query: 275 LKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 L A +LF ++ DD+ + + P G+G AI NRLE++A Sbjct: 293 LTTIAAHLFEALRTFDDADIDIVYSLAFPKKGIGNAIMNRLEKSAG 338 >gi|212697122|ref|ZP_03305250.1| hypothetical protein ANHYDRO_01688 [Anaerococcus hydrogenalis DSM 7454] gi|212675897|gb|EEB35504.1| hypothetical protein ANHYDRO_01688 [Anaerococcus hydrogenalis DSM 7454] Length = 345 Score = 162 bits (411), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 114/332 (34%), Positives = 172/332 (51%), Gaps = 25/332 (7%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS-D 66 D N L+ A + + G +A PTETVYGL D NP A R++++ K RP NPLI H+ D Sbjct: 14 DENILKHAAKIIKNGDLVAFPTETVYGLGADGLNPEASRKIFKAKNRPEDNPLILHIDED 73 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + + VD + L K WPGPLT++L ++ I + T T R P + Sbjct: 74 YKLDELVEEVDDRTKFLIKNLWPGPLTVILK--KSSKIPDIITGGGDTVAVRRPKDKLAR 131 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 + I+ P+A PSAN SG+ S TN K + + IPLIIDGG S IG+EST++++ Sbjct: 132 EFIKFCNRPIAAPSANISGRPSPTNAKDVF-YDMDGRIPLIIDGGSSDIGIESTVIDMSL 190 Query: 186 EKKVRILRPGGLEIETLKRAI-SVEL-EYCVDETSTPQSPGMLKSHYAPRSQVR------ 237 E ILRPG E +K+ I +V L + VD+T P+SPG HYAP++Q++ Sbjct: 191 ENPC-ILRPGYYTYEYIKKFIPNVCLDDSLVDDTKVPRSPGQKYKHYAPKAQMKVFVGEK 249 Query: 238 ---------LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKI 288 L+ + + ++ F K ++ I+L+L L E + LF ++ Sbjct: 250 SVEKINDLALKYKNDGKKVGILVFNKYTEKF--SSYITLSLGDKENLIEMSHVLFEALRD 307 Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 D G I + GLG +I NR++++A+ Sbjct: 308 LDRKGVDIILAQGVEEIGLGKSIMNRMKKSAS 339 >gi|238855955|ref|ZP_04646241.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus jensenii 269-3] gi|260664672|ref|ZP_05865524.1| Sua5 family translation factor [Lactobacillus jensenii SJ-7A-US] gi|282934362|ref|ZP_06339629.1| hypothetical protein HMPREF0886_0956 [Lactobacillus jensenii 208-1] gi|238831428|gb|EEQ23779.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus jensenii 269-3] gi|260561737|gb|EEX27709.1| Sua5 family translation factor [Lactobacillus jensenii SJ-7A-US] gi|281301572|gb|EFA93849.1| hypothetical protein HMPREF0886_0956 [Lactobacillus jensenii 208-1] Length = 333 Score = 162 bits (411), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 114/334 (34%), Positives = 174/334 (52%), Gaps = 28/334 (8%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 I + + +A EFL G +A PTETVYGL + +++ +Y+ K RP+ NPLI V Sbjct: 4 QILKKDQIDQAVEFLKKGELVAFPTETVYGLGAIATKEESVKNVYKAKGRPSDNPLIVTV 63 Query: 65 SDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 SD +M+K++A P + L K FWPGPLTL+L L+ + T LKTA FR P Sbjct: 64 SDENMMKRYAKFVPERAEKLIKHFWPGPLTLLL-LVKEGSLPDAVTGGLKTAAFRCPNDE 122 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 T +LI G+P+ PSAN S + S T +H+ + +I IIDGG +++GLESTI++ Sbjct: 123 LTHELISKLGYPIVGPSANTSTKPSPTTAEHVY-HDLKGKISAIIDGGATEVGLESTIID 181 Query: 183 VQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 + E + +LRPG + E L + ++ V + + P++PGM HYAP + V + Sbjct: 182 LSVETPI-VLRPGQITPEELSEVLGEKVLINTGKVSDKAIPKAPGMKYRHYAPNAPVWV- 239 Query: 240 AIHVNPREALIRFGNVPIKN------IENAIISLNLSKTGK------LKEAAFNLFNYMK 287 + FG + K+ +++ + L+L K LK+A NLF+ ++ Sbjct: 240 ------VDDTNDFGKIEFKSDTAVAALDSVLEKLDLPAENKFSLGKDLKDADHNLFSALR 293 Query: 288 IADDSGA-SSIAFSSIPNHGLGIAINNRLERAAA 320 DD +I +A NRL +AAA Sbjct: 294 FFDDEDEIKTIYVQGFDEGEKSLAYMNRLNKAAA 327 >gi|57640883|ref|YP_183361.1| putative translation factor Sua5p-like protein [Thermococcus kodakarensis KOD1] gi|57159207|dbj|BAD85137.1| putative translation factor Sua5p homolog [Thermococcus kodakarensis KOD1] Length = 339 Score = 162 bits (411), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 118/329 (35%), Positives = 170/329 (51%), Gaps = 23/329 (6%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D ++ A + G +A PTETVYGL D+ N A+RR++E K RPA NPLI H++ I Sbjct: 12 DEKKIKVAARLILEGKLVAFPTETVYGLGADALNEGAVRRIFEAKGRPADNPLIIHIASI 71 Query: 68 SMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126 ++K A P LA+ FWPGPLTLVL ++ ++T L T R+P Sbjct: 72 DDLEKVAREVPEKAKLLAERFWPGPLTLVLP--KREEVPLVTTGGLDTVAVRMPAHPIAL 129 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 + PLA PSAN SG+ S T+ +H++ K I IIDGG + +G+EST+V++ E Sbjct: 130 ALIRASTPLAAPSANISGKPSPTSAEHVIDDFYGK-IEGIIDGGETWVGVESTVVDLTEE 188 Query: 187 KKVRILRPGGLEIETLKRAIS-VELEYCV--DETSTPQSPGMLKSHYAPRSQV------- 236 V +LRPGG+ +E L++ I + + V + ++PGM HYAP + V Sbjct: 189 PPV-LLRPGGIPLEELEKVIGPIRIHPAVKGKKIDLAKAPGMKYKHYAPNAMVIVVEGTP 247 Query: 237 --RLRAIHV---NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291 R R I R+ R G + +E L KT L+E A NLF ++ D Sbjct: 248 ENRRRKIQELVDEYRKKGHRVGVMATFEVEADEFYF-LGKT--LEEVARNLFKALRELDK 304 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320 G I + G+G+A+ NRL +AA Sbjct: 305 RGVDVIIAEGVEEVGVGLAVMNRLRKAAG 333 >gi|42784497|ref|NP_981744.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus ATCC 10987] gi|42740429|gb|AAS44352.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus ATCC 10987] Length = 346 Score = 162 bits (410), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 115/325 (35%), Positives = 171/325 (52%), Gaps = 21/325 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++A + L IA PTETVYGL ++ N AI +++E K RP+ NPLI H+ S + Sbjct: 21 LQEAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLD 80 Query: 72 KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P++ L + FWPGPLT++L I TA L T R+P LIE Sbjct: 81 GIVKEIPPVAEKLMEHFWPGPLTIILP--RKEGISEKVTAGLNTVGVRMPDHPVALALIE 138 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+A PSANRSG+ S T H+ + ++I I+DGG + +G+EST+++ C V Sbjct: 139 EANVPVAAPSANRSGRPSPTLASHVY-EDLNEKIAGIVDGGATGVGVESTVID--CTSAV 195 Query: 190 -RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPR--------SQVRL 238 ILRPGG+ E L+ I +V L+ + DE P+SPGM +HYAP+ S+ + Sbjct: 196 PTILRPGGITKEQLESVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255 Query: 239 RAIHVNPREALIRFG---NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 + + +E + G +++ NA + L+ L A L++ ++ D S Sbjct: 256 QRLADEKKEEGFKVGVLTTEEYQHVYNADVVLSCGVRSDLASVATKLYDVLRTFDASEVD 315 Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320 I S PN G+G AI NRL +AA Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAG 340 >gi|323702620|ref|ZP_08114282.1| Sua5/YciO/YrdC/YwlC family protein [Desulfotomaculum nigrificans DSM 574] gi|323532439|gb|EGB22316.1| Sua5/YciO/YrdC/YwlC family protein [Desulfotomaculum nigrificans DSM 574] Length = 354 Score = 162 bits (410), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 117/337 (34%), Positives = 167/337 (49%), Gaps = 28/337 (8%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D N + +A + + G +A PTETVYGL + + TA+ +Y K RP+ NPLI HV+D Sbjct: 17 DQNVIDRAAQIIKNGGLVAFPTETVYGLGANGLDGTAVAGIYRAKGRPSDNPLILHVADF 76 Query: 68 SMVKK-HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 +M + A + P++ L FWPGPLTLV+ I T L T R+P Sbjct: 77 AMAEALSAGLPPVAGMLMDKFWPGPLTLVVP--RANHIPGQVTGGLDTVGIRMPSHPVAL 134 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LI+ G P+A PSANRSG+ S T H+ + + I I+DGG + +GLEST+++V Sbjct: 135 ALIKAAGVPIAAPSANRSGRPSPTRAAHV-QADLQGRIDAILDGGPTGVGLESTVLDVSG 193 Query: 186 EKKVRILRPGGLEIETLKR---AISVE---LEYCVDETSTPQSPGMLKSHYAPRSQVRL- 238 E+ V ILRPGG+ E L ++++ L + P+SPGM +HYAP + + L Sbjct: 194 EQPV-ILRPGGVTYEQLADLLPRVTIDPSILGKKLSRDQAPRSPGMKYTHYAPAAPLTLF 252 Query: 239 --------RAIHVNPREALIRFGNVPIKNIEN-------AIISLNLSKTGKLKEAAFNLF 283 +AI E L R V I E + L + + AA LF Sbjct: 253 EGEPARVVQAIARRAAEQLARGSRVGILAFEENAPYYPRGAVILTMGQQKNPATAANMLF 312 Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ D I + G+G+AI NRL RAA Sbjct: 313 ALLRQFDRLKVEVILAEGMEPKGIGLAIMNRLRRAAG 349 >gi|108760186|ref|YP_629797.1| Sua5/YciO/YrdC/YwlC family protein [Myxococcus xanthus DK 1622] gi|108464066|gb|ABF89251.1| Sua5/YciO/YrdC/YwlC family protein [Myxococcus xanthus DK 1622] Length = 333 Score = 162 bits (410), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 114/326 (34%), Positives = 171/326 (52%), Gaps = 22/326 (6%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +L +A E L G +A+PTETVYGL+ ++ + A+RR++ IK RPA +PLI H+ + Sbjct: 18 ESLERAVELLRHGGVVALPTETVYGLSANAEDELAVRRVFAIKGRPATHPLIVHIPGVEH 77 Query: 70 VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + A V + LA+ FWPGPLTLVL T T T RVP + Sbjct: 78 LNTWAREVPEAARKLAEAFWPGPLTLVLP--RTARATDAVTGGQDTVALRVPNHPVALAV 135 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ G LA PSANR G++S T +H+ + ++ L++DGG +G+ESTIV++ + Sbjct: 136 LQKLGGGLAAPSANRFGKVSPTTAEHV-REDLGGDVDLVLDGGPCTVGVESTIVDLSSNE 194 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 ILRPGGL E ++R + ++ V +S + G L+SHYAPR+ V L P + Sbjct: 195 PA-ILRPGGLAAEDVERVLGRKVP--VRTSSKVRVSGSLESHYAPRAGVVL----TEPVQ 247 Query: 248 ALIRFGNVPIKNIENAII---SLNLSKT-------GKLKEAAFNLFNYMKIADDSGASSI 297 A+ R + + + ++ SL L + AA L+ ++ AD G + Sbjct: 248 AVARVQELRGQGLRVGVLGPASLALPPDVPRFDVPDEPAGAARVLYARLREADTQGHDVL 307 Query: 298 AFSSIPNHGLGIAINNRLERAAAPRN 323 GLGIA+ +RL RAAAPR Sbjct: 308 VACLPAESGLGIAVRDRLSRAAAPRG 333 >gi|311032025|ref|ZP_07710115.1| sua5/yciO/yrdC/ywlC family protein [Bacillus sp. m3-13] gi|311033339|ref|ZP_07711429.1| sua5/yciO/yrdC/ywlC family protein [Bacillus sp. m3-13] Length = 350 Score = 162 bits (409), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 110/315 (34%), Positives = 165/315 (52%), Gaps = 23/315 (7%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-L 83 +A PTETVYGL ++ + A+ +++E K RP+ NPLI H+S + + + P S H L Sbjct: 34 VAFPTETVYGLGANALSDQAVLKIFEAKGRPSDNPLIVHISKLEQLAELVDNVPESAHKL 93 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANR 142 + FWPGPLTLV L + TA L+T R+P + LIE G PLA PSAN Sbjct: 94 MEAFWPGPLTLV--LTKKEGVSQYVTAGLETLAVRMPDHSVARALIEISGLPLAAPSANL 151 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202 SG+ S T KH+ + I I+DGG + +GLEST+V+ E + ILRPGG+ E L Sbjct: 152 SGKPSPTTAKHV-EEDLIHRIAGIVDGGATGVGLESTVVDCTAETPM-ILRPGGVTKEEL 209 Query: 203 KRAIS-VELE---YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVP-- 256 ++ + V+++ + +E P+SPGM +HYAP + V L + E I+ + Sbjct: 210 EKVVGKVDVDPALFSQEELHKPKSPGMKYTHYAPIAPVYLVEGSASFMEQTIKGAQLKGH 269 Query: 257 ----------IKNIE-NAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305 I I+ I +++ L A L++ ++ + + I + P Sbjct: 270 KVGLLATEETIAQIQATEITAISCGTKNDLATVASQLYDGLRAFNATDVDVIFSETFPRT 329 Query: 306 GLGIAINNRLERAAA 320 G+G AI NRLE+AA Sbjct: 330 GVGAAIMNRLEKAAG 344 >gi|317133627|ref|YP_004092941.1| Sua5/YciO/YrdC/YwlC family protein [Ethanoligenens harbinense YUAN-3] gi|315471606|gb|ADU28210.1| Sua5/YciO/YrdC/YwlC family protein [Ethanoligenens harbinense YUAN-3] Length = 343 Score = 162 bits (409), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 113/314 (35%), Positives = 167/314 (53%), Gaps = 27/314 (8%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP-LSLHL 83 +AIPTETVYGLA ++ + A+R ++ K RP NPLI HV+ + ++A+ P + L Sbjct: 31 VAIPTETVYGLAANALDEAAVRAIFAAKGRPQDNPLIVHVAHPDWLPRYAASIPDAARKL 90 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANR 142 FWPGPLT+VL ++ + P +A L TA FR P +IE G PLA PSANR Sbjct: 91 VNAFWPGPLTIVLP--ASPQLAPAVSAGLPTAGFRCPSHPVATAVIEAAGVPLAAPSANR 148 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202 SG S T H+L + + I ++D G +G+EST+V + + ILRPGG+ L Sbjct: 149 SGSPSPTAAAHVL-ADLAGRIDAVVDAGPCAVGVESTVVALHGDVP-HILRPGGITPAQL 206 Query: 203 KRAI-SVELEYCV----DETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRF----- 252 K + + E++ V D+ + SPGM HYAP++ V I P + +R+ Sbjct: 207 KAVLGAAEVDPAVLEGLDDAAKAASPGMKYKHYAPKASVT---ILKGPLDVFVRYTRAHA 263 Query: 253 --GNVPI-KNIENAIISLNLSKTGKLKEAAFN---LFNYMKIADDSGASSIAFSSIPNH- 305 G + + E I L G ++AA LF ++ D+ GA ++ F+ P Sbjct: 264 VDGTFALCFDGEETRIGLPCVSYGPARDAAAQARELFGALRALDERGARAV-FARAPEET 322 Query: 306 GLGIAINNRLERAA 319 G+G+A+ NRL RAA Sbjct: 323 GMGLAVYNRLLRAA 336 >gi|301056793|ref|YP_003795004.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis CI] gi|300378962|gb|ADK07866.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus biovar anthracis str. CI] Length = 346 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 116/325 (35%), Positives = 172/325 (52%), Gaps = 21/325 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++A + L IA PTETVYGL ++ N AI +++E K RP+ NPLI H+ S + Sbjct: 21 LQEAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLD 80 Query: 72 KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P++ L + FWPGPLT++L I TA L T R+P LIE Sbjct: 81 GIVKEIPPVAEKLMEHFWPGPLTIILP--RKEGISEKVTAGLHTVGVRMPDHPVALALIE 138 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+A PSANRSG+ S T H+ + ++I I+DGG + +G+EST+++ C V Sbjct: 139 EANVPVAAPSANRSGRPSPTLASHVY-EDLNEKIAGIVDGGATGVGVESTVID--CTSAV 195 Query: 190 -RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPR--------SQVRL 238 ILRPGG+ E L+ I +V L+ + DE P+SPGM +HYAP+ S+ + Sbjct: 196 PTILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255 Query: 239 RAIHVNPREALIRFGNVPIK---NIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 + + +E + G + + +I NA + L+ L A L++ ++ D S Sbjct: 256 QRLVDEKKEEGFKVGVLTTEEYHHIHNADVVLSCGVRSDLASVATKLYDVLRTFDASEVD 315 Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320 I S PN G+G AI NRL +AA Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAG 340 >gi|304385307|ref|ZP_07367652.1| Sua5/YciO/YrdC/YwlC family protein [Pediococcus acidilactici DSM 20284] gi|304328514|gb|EFL95735.1| Sua5/YciO/YrdC/YwlC family protein [Pediococcus acidilactici DSM 20284] Length = 340 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 110/332 (33%), Positives = 175/332 (52%), Gaps = 20/332 (6%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I S L A + G +A PTETVYGL D+ NP A++++Y+ K RP+ NPLI HV+ Sbjct: 4 IFQSENLADAAAAIQRGELVAFPTETVYGLGADATNPDAVKKVYQAKGRPSDNPLIVHVT 63 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFT 124 + V + A +D S L FWPGPLT++L + + P+ T L TA FR P T Sbjct: 64 GPAQVAEFAEIDAQSKQLMDTFWPGPLTIILPIKPHA-LDPVVTGGLTTAAFRNPDTPLT 122 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 KLIE G PL PSAN SG+ S T H++ + +I ++DGG +KIG+EST++++ Sbjct: 123 LKLIEQAGVPLVGPSANTSGKPSPTKPAHVM-HDLNGKIAGVLDGGETKIGVESTVLDMS 181 Query: 185 CEKKVRILRPGGLEIETLKRAIS-VELEYC-VDETSTPQSPGMLKSHYAPRSQVRL--RA 240 +LRPG + E L + V+ ++ V + P++PGM HYAP +QV + A Sbjct: 182 GAVP-SVLRPGAVTPEDLTPILGEVQTDHHKVGKDEVPKAPGMKYKHYAPNAQVYIVKDA 240 Query: 241 IHVNPREALIRFGNVPIKNIENAII----------SLNLSKTGK-LKEAAFNLFNYMKIA 289 + + + P+ + + I +++ G+ + A+ +LF+ ++ Sbjct: 241 QWSKVADWVAQHAQQPVGVLATSAIFDSTKLIDFDNVDFISLGEDARTASHHLFDGLRTF 300 Query: 290 DDSGASSIAFS-SIPNHGLGIAINNRLERAAA 320 D + F+ + G+G A NRL+++A Sbjct: 301 DGKPQIKVIFAQAFDPTGIGAAYMNRLQKSAG 332 >gi|159035694|ref|YP_001534947.1| Sua5/YciO/YrdC/YwlC family protein [Salinispora arenicola CNS-205] gi|157914529|gb|ABV95956.1| Sua5/YciO/YrdC/YwlC family protein [Salinispora arenicola CNS-205] Length = 317 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 118/323 (36%), Positives = 186/323 (57%), Gaps = 17/323 (5%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 ++ + + +A L AG +A PTETVYGL ++ + A+ R++ K RP+ +PLI H++ Sbjct: 1 MSADSGVAEAAAVLRAGGLVAFPTETVYGLGANALDAQAVARIFAAKARPSFDPLITHLA 60 Query: 66 DISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GF 123 + + ++K +V P LA+ FWPGPLTL++D + I P+ T+ L+T RVP Sbjct: 61 EAAELEKLVGTVSPAVAVLAERFWPGPLTLIVDRPAA--IPPIVTSGLETMAVRVPDHAA 118 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + LI G P+A PSANR GQ+S T +H++ + + + +++DGG ++ G+ESTIV+V Sbjct: 119 ARGLIAAAGVPVAAPSANRFGQLSPTWAEHVV-AGLGAAVDVVLDGGPTRCGIESTIVDV 177 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 + E+ V +LR G L +E+L+ A+ + + P +PG L +HYAPR+ +RL Sbjct: 178 RGERPV-VLRLGALPVESLEEAVG-PVTVRPGSSGQPVAPGTLAAHYAPRTPLRL-VTGA 234 Query: 244 NP------REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297 P R + F + P E A + + LS G L EAA LF+ + D +G I Sbjct: 235 GPMDGGGARRGFLGFRSRPAG--EWAAVEV-LSSDGDLTEAAARLFDALHRLDGAGVDEI 291 Query: 298 AFSSIPNHGLGIAINNRLERAAA 320 +P G+G A+N+RL RAAA Sbjct: 292 VVEPVPEVGVGRAVNDRLRRAAA 314 >gi|14521794|ref|NP_127270.1| sua5 related protein [Pyrococcus abyssi GE5] gi|5459014|emb|CAB50500.1| Putative translation factor, SUA5 related protein [Pyrococcus abyssi GE5] Length = 340 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 113/329 (34%), Positives = 173/329 (52%), Gaps = 26/329 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +R A F+ G +A PTETVYGL ++ + A++R++E K RPA NPLI H++ ++ Sbjct: 16 IRIAAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLE 75 Query: 72 KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPC-GFTKKLI 128 A P LAK FWPGPLTLV L +++ P + T L T R+P KLI Sbjct: 76 VLAKEIPEEAEMLAKRFWPGPLTLV---LPKSEVVPRVITGGLDTVAVRMPAHEIALKLI 132 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E P+A PSAN SG+ S T+ H+ + +I IIDGG ++IG+EST++++ E Sbjct: 133 ELSERPIAAPSANISGKPSPTSAHHV-AEDFYGKIECIIDGGETRIGVESTVIDL-TEWP 190 Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV--DETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245 +LRPGGL +E +++ I + + V T ++PGM HYAP ++V + P Sbjct: 191 PVLLRPGGLPLEEIEKVIGEIRIHPAVYGKSVDTAKAPGMKYRHYAPSAEV---IVVEGP 247 Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGK------------LKEAAFNLFNYMKIADDSG 293 R+ + R I + + + +G ++E A NLF ++ D +G Sbjct: 248 RDKVRRKIEELIAKFKEEGKKVGVIGSGSYDADEVFYLGDTVEEIARNLFKALRHMDRTG 307 Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAAPR 322 I + GLG+A+ NRL +A+ R Sbjct: 308 VDVILAEGVEEKGLGLAVMNRLRKASGYR 336 >gi|300117839|ref|ZP_07055606.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus SJ1] gi|298724703|gb|EFI65378.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus SJ1] Length = 346 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 116/325 (35%), Positives = 172/325 (52%), Gaps = 21/325 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++A + L IA PTETVYGL ++ N AI +++E K RP+ NPLI H+ S + Sbjct: 21 LQEAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLD 80 Query: 72 KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P++ L + FWPGPLT++L I TA L T R+P LIE Sbjct: 81 GIVKEIPPVAEKLMEHFWPGPLTIILP--RKEGISEKVTAGLHTVGVRMPDHPVALALIE 138 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+A PSANRSG+ S T H+ + ++I I+DGG + +G+EST+++ C V Sbjct: 139 EANVPVAAPSANRSGRPSPTLASHVY-EDLNEKIAGIVDGGATGVGVESTVID--CTSAV 195 Query: 190 -RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPR--------SQVRL 238 ILRPGG+ E L+ I +V L+ + DE P+SPGM +HYAP+ S+ + Sbjct: 196 PTILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255 Query: 239 RAIHVNPREALIRFGNVPIK---NIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 + + +E + G + + +I NA + L+ L A L++ ++ D S Sbjct: 256 QRLVDEKKEEGFKVGVLTTEEYHHIYNADVVLSCGVRSDLASVATKLYDVLRTFDASEVD 315 Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320 I S PN G+G AI NRL +AA Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAG 340 >gi|325847835|ref|ZP_08170057.1| Sua5/YciO/YrdC/YwlC family protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480853|gb|EGC83906.1| Sua5/YciO/YrdC/YwlC family protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 345 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 113/332 (34%), Positives = 172/332 (51%), Gaps = 25/332 (7%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS-D 66 D N L+ A + + G +A PTETVYGL D NP A R++++ K RP NPLI H+ D Sbjct: 14 DENILKHAAKIIKNGDLVAFPTETVYGLGADGLNPEASRKIFKAKNRPEDNPLILHIDED 73 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + + VD + L K WPGPLT++L ++ I + T T R P + Sbjct: 74 YKLDELVEKVDERTKFLIKNLWPGPLTVILK--KSSKIPDIITGGGDTVAVRRPKDKLAR 131 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 + I+ P+A PSAN SG+ S TN K + + IPLIIDGG S IG+EST++++ Sbjct: 132 EFIKFCDRPIAAPSANISGRPSPTNAKDVF-YDMNGRIPLIIDGGSSDIGIESTVIDMSL 190 Query: 186 EKKVRILRPGGLEIETLKRAI-SVEL-EYCVDETSTPQSPGMLKSHYAPRSQVR------ 237 E ILRPG E +K+ I +V L + +D+T P+SPG HYAP++Q++ Sbjct: 191 ENPC-ILRPGYYTYEYIKKFIPNVCLDDSLLDDTKVPRSPGQKYKHYAPKAQMKVFVGEK 249 Query: 238 ---------LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKI 288 L+ + + ++ F K ++ I+L+L L E + LF ++ Sbjct: 250 SVEKINDLALKYKNDGKKVGILVFNKYTEKF--SSYITLSLGDKENLIEMSHVLFEALRD 307 Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 D G I + GLG +I NR++++A+ Sbjct: 308 LDRKGVDIILAQGVEEIGLGKSIMNRMKKSAS 339 >gi|270291031|ref|ZP_06197254.1| translation factor [Pediococcus acidilactici 7_4] gi|270280427|gb|EFA26262.1| translation factor [Pediococcus acidilactici 7_4] Length = 340 Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 112/333 (33%), Positives = 177/333 (53%), Gaps = 22/333 (6%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I S L A + G +A PTETVYGL D+ NP A++++Y+ K RP+ NPLI HV+ Sbjct: 4 IFQSENLADAAAAIQRGDLVAFPTETVYGLGADATNPDAVKKVYQAKGRPSDNPLIVHVT 63 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDL-LSTTDIHPLSTANLKTACFRVP-CGF 123 + V + A +D S L FWPGPLT++L + L D P+ T L TA FR P Sbjct: 64 GPAQVAEFAEIDAQSKQLMDTFWPGPLTIILPIKLHALD--PVVTGGLTTAAFRNPDTPL 121 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 T KLIE G PL PSAN SG+ S T H++ + +I ++DGG +KIG+EST++++ Sbjct: 122 TLKLIEQAGVPLVGPSANTSGKPSPTKPAHVM-HDLDGKIAGVLDGGETKIGVESTVLDM 180 Query: 184 QCEKKVRILRPGGLEIETLKRAIS-VELEYC-VDETSTPQSPGMLKSHYAPRSQVRL--R 239 +LRPG + E L + V+ ++ V + P++PGM HYAP +QV + Sbjct: 181 SGTVP-SVLRPGAVTPEDLTPILGEVQTDHHKVGKDEVPKAPGMKYKHYAPNAQVYIVKD 239 Query: 240 AIHVNPREALIRFGNVPIKNIENAII----------SLNLSKTGK-LKEAAFNLFNYMKI 288 A + + + P+ + + I +++ G+ + A+ +LF+ ++ Sbjct: 240 AQWSKVADWVAQHAQQPVGVLATSAIFDSTKLIDFDNVDFISLGEDARTASHHLFDGLRT 299 Query: 289 ADDSGASSIAFS-SIPNHGLGIAINNRLERAAA 320 D + + F+ + G+G A NRL+++A Sbjct: 300 FDGNPQIKVIFAQAFDPTGIGAAYMNRLQKSAG 332 >gi|238061924|ref|ZP_04606633.1| Sua5/YciO/YrdC/YwlC family protein [Micromonospora sp. ATCC 39149] gi|237883735|gb|EEP72563.1| Sua5/YciO/YrdC/YwlC family protein [Micromonospora sp. ATCC 39149] Length = 321 Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 115/319 (36%), Positives = 180/319 (56%), Gaps = 14/319 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A L AG +A PTETVYGL ++ + A R++E K+RP+ +PLI H++D + Sbjct: 4 GSGIAEAASVLRAGGLVAFPTETVYGLGANALDARAAARIFEAKQRPSFDPLITHLADAA 63 Query: 69 MVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKK 126 + P ++ LA+ FWPGPLTL++D + I P+ T+ L+T RVP + Sbjct: 64 DLTALVGPVPGAVAALAERFWPGPLTLIVDRPAA--IPPIVTSGLETMAVRVPDEASARA 121 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LI G P+A PSANR GQ+S T +H++ + + + +++DGG ++ G+ESTIV+ + Sbjct: 122 LIAAAGVPVAAPSANRFGQLSPTRAEHVV-AGLGGAVDVVLDGGPTRCGIESTIVDARGG 180 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL-----RAI 241 + V +LR G L +E L+ A+ + + P +PG L +HYAPR+ +R+ A Sbjct: 181 QPV-VLRLGALAVEALEEAVG-PVTVRPGSSGQPVAPGTLAAHYAPRTPLRVVGGAEPAA 238 Query: 242 HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSS 301 R L+ F P+ A+ LS G L AA LF+ + D +G + I Sbjct: 239 GDGIRRGLLAFRERPVGGDWAAVEV--LSPGGDLTVAAARLFDALHRLDAAGVAEIVAER 296 Query: 302 IPNHGLGIAINNRLERAAA 320 +P+ G+G AIN+RL RAAA Sbjct: 297 VPDVGVGRAINDRLGRAAA 315 >gi|297170667|gb|ADI21691.1| putative translation factor (SUA5) [uncultured Verrucomicrobiales bacterium HF0130_14P10] Length = 337 Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 118/343 (34%), Positives = 179/343 (52%), Gaps = 33/343 (9%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 MQ L L +G +A+PTETVYGLA + N A+ +++E K+RP +PL Sbjct: 1 MQKHYGVSPEELSHVAGLLHSGQIVALPTETVYGLACLALNKLAVAKVFEAKQRPINDPL 60 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRV 119 I HVSD++ + D ++ L+++FWPGPLTLV L T I P + T+ L T R Sbjct: 61 IIHVSDLTEAQSVCRPDHRAILLSEVFWPGPLTLV---LPKTKIVPTIVTSGLSTVAVRS 117 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P ++++ PLA PSAN G+IS T +HI S E P ++DGG +K+G+ES Sbjct: 118 PANPVFREILNLVSAPLAAPSANPFGKISPTRAEHI-KQSFGDEHPPVVDGGPTKLGIES 176 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISV-----ELEYCVDETSTPQSPGMLKSHYAPR 233 T+V++ + RILRPG ++ E + + EL+ D+ P SPG+L HY P Sbjct: 177 TVVDLSS-SRTRILRPGPIDREAISAILGEEPEIPELKASSDKPKKPLSPGLLAKHYQPE 235 Query: 234 SQVRLRAIHVNPREALIRF----GNVPIKNI--------ENAIIS-----LNLSKTGKLK 276 S +++ + E L+ F ++P EN S ++LS+ G + Sbjct: 236 SPLQV----FSNTEDLMAFLKMEPSIPAATFVITHSPLNENCFPSKGLKFMHLSEFGDPE 291 Query: 277 EAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 E A NLF ++ AD I +P G+G A+N+RL +A+ Sbjct: 292 EIAKNLFARLREADAHSPPLILCPLLPETGIGSAVNDRLRKAS 334 >gi|30265348|ref|NP_847725.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. Ames] gi|47778411|ref|YP_022236.2| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49188160|ref|YP_031413.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. Sterne] gi|49480413|ref|YP_039318.1| sua5/yciO/yrdC/ywlC family protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52140237|ref|YP_086594.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus E33L] gi|65317301|ref|ZP_00390260.1| COG0009: Putative translation factor (SUA5) [Bacillus anthracis str. A2012] gi|165871252|ref|ZP_02215901.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0488] gi|170688185|ref|ZP_02879396.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0465] gi|170709376|ref|ZP_02899789.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0389] gi|177651870|ref|ZP_02934453.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0174] gi|206978500|ref|ZP_03239359.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus H3081.97] gi|217962814|ref|YP_002341392.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus AH187] gi|218906503|ref|YP_002454337.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus AH820] gi|227818088|ref|YP_002818097.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. CDC 684] gi|228917934|ref|ZP_04081470.1| hypothetical protein bthur0012_51350 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228930333|ref|ZP_04093337.1| hypothetical protein bthur0010_50120 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228949046|ref|ZP_04111318.1| hypothetical protein bthur0007_51670 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229094437|ref|ZP_04225509.1| hypothetical protein bcere0021_51420 [Bacillus cereus Rock3-42] gi|229124829|ref|ZP_04254007.1| hypothetical protein bcere0016_51090 [Bacillus cereus 95/8201] gi|229142067|ref|ZP_04270592.1| hypothetical protein bcere0013_51530 [Bacillus cereus BDRD-ST26] gi|229199451|ref|ZP_04326114.1| hypothetical protein bcere0001_49500 [Bacillus cereus m1293] gi|229600982|ref|YP_002869540.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0248] gi|254686252|ref|ZP_05150111.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. CNEVA-9066] gi|254724247|ref|ZP_05186031.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A1055] gi|254735253|ref|ZP_05192962.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. Western North America USA6153] gi|254755794|ref|ZP_05207826.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. Vollum] gi|254762134|ref|ZP_05213980.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. Australia 94] gi|30260026|gb|AAP29211.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. Ames] gi|47552116|gb|AAT34711.2| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49182087|gb|AAT57463.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. Sterne] gi|49331969|gb|AAT62615.1| sua5/yciO/yrdC/ywlC family protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51973706|gb|AAU15256.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus E33L] gi|164712919|gb|EDR18447.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0488] gi|170125724|gb|EDS94638.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0389] gi|170667878|gb|EDT18630.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0465] gi|172082574|gb|EDT67638.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0174] gi|206743290|gb|EDZ54738.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus H3081.97] gi|217063465|gb|ACJ77715.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus AH187] gi|218539161|gb|ACK91559.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus AH820] gi|227004860|gb|ACP14603.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. CDC 684] gi|228584027|gb|EEK42182.1| hypothetical protein bcere0001_49500 [Bacillus cereus m1293] gi|228641356|gb|EEK97662.1| hypothetical protein bcere0013_51530 [Bacillus cereus BDRD-ST26] gi|228658620|gb|EEL14282.1| hypothetical protein bcere0016_51090 [Bacillus cereus 95/8201] gi|228688974|gb|EEL42801.1| hypothetical protein bcere0021_51420 [Bacillus cereus Rock3-42] gi|228810619|gb|EEM56968.1| hypothetical protein bthur0007_51670 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228829319|gb|EEM74952.1| hypothetical protein bthur0010_50120 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228841731|gb|EEM86842.1| hypothetical protein bthur0012_51350 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229265390|gb|ACQ47027.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0248] Length = 346 Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 116/325 (35%), Positives = 172/325 (52%), Gaps = 21/325 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++A + L IA PTETVYGL ++ N AI +++E K RP+ NPLI H+ S + Sbjct: 21 LQEAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLD 80 Query: 72 KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P++ L + FWPGPLT++L I TA L T R+P LIE Sbjct: 81 GIVKEIPPVAEKLMEHFWPGPLTIILP--RKEGISEKVTAGLHTVGVRMPDHPVALALIE 138 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+A PSANRSG+ S T H+ + ++I I+DGG + +G+EST+++ C V Sbjct: 139 EANVPVAAPSANRSGRPSPTLASHVY-EDLNEKIAGIVDGGATGVGVESTVID--CTSAV 195 Query: 190 -RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPR--------SQVRL 238 ILRPGG+ E L+ I +V L+ + DE P+SPGM +HYAP+ S+ + Sbjct: 196 PTILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255 Query: 239 RAIHVNPREALIRFGNVPIK---NIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 + + +E + G + + +I NA + L+ L A L++ ++ D S Sbjct: 256 QRLVDEKKEEGFKVGVLTTEEYHHIYNADVVLSCGVRSDLASVATKLYDVLRTFDASEVD 315 Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320 I S PN G+G AI NRL +AA Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAG 340 >gi|222100697|ref|YP_002535265.1| Translation factor SUA5 [Thermotoga neapolitana DSM 4359] gi|221573087|gb|ACM23899.1| Translation factor SUA5 [Thermotoga neapolitana DSM 4359] Length = 335 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 114/322 (35%), Positives = 167/322 (51%), Gaps = 12/322 (3%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D +LR+A + L G + PTETVYG+ D+ N A R+++EIK RPA NPLI H+ Sbjct: 13 DERSLREAADLLKKGEVVVFPTETVYGIGADAYNEEACRKIFEIKGRPADNPLIVHICSF 72 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 S +++ A + FWPGPLT++L S I + TA L T R+P K Sbjct: 73 SQLEEVADGYESFRDFLERFWPGPLTVILPKKSQR-ISDVVTAGLPTVAVRMPAHPVALK 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LIE G P+A PSAN SG+ S T+V+H++ + + + LI+D G + GLESTI+++ E Sbjct: 132 LIEMLGDPIAAPSANLSGRPSATSVEHVVEDFMGR-VSLILDAGNTPFGLESTIIDLSRE 190 Query: 187 KKVRILRPGGLEIETLKR----AISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242 K V +LRPG +E+E LK + + + P +PGM HYAP + L Sbjct: 191 KPV-LLRPGPVEVEKLKEFFPDLVVPDFVKKSEFRGKPLAPGMKYRHYAPSKPLILVENL 249 Query: 243 VNPREALIRF-GNVPIKNIENAIISLNLSKTGKLKEA---AFNLFNYMKIADDSGASSIA 298 ++ L F +V I E + + G LK A NLF ++ A+ I Sbjct: 250 EKMKDVLREFPDHVVICVEERKELYRDRIVIGSLKNPYSIAQNLFAALREAEKREKEYII 309 Query: 299 FSSIPNHGLGIAINNRLERAAA 320 + G+ A+ NRL +AA+ Sbjct: 310 VEGLEERGILFAVMNRLRKAAS 331 >gi|167636681|ref|ZP_02394969.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0442] gi|254744456|ref|ZP_05202136.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. Kruger B] gi|167527881|gb|EDR90703.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0442] Length = 346 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 116/325 (35%), Positives = 172/325 (52%), Gaps = 21/325 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++A + L IA PTETVYGL ++ N AI +++E K RP+ NPLI H+ S + Sbjct: 21 LQEAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLD 80 Query: 72 KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P++ L + FWPGPLT++L I TA L T R+P LIE Sbjct: 81 GIVKEIPPVAEKLMEHFWPGPLTIILP--RKEGISEKVTAGLHTVGVRMPDHPVALALIE 138 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+A PSANRSG+ S T H+ + ++I I+DGG + +G+EST+++ C V Sbjct: 139 EANVPVAAPSANRSGRPSPTLASHVY-EDLNEKIAGIVDGGATGVGVESTVID--CTSTV 195 Query: 190 -RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPR--------SQVRL 238 ILRPGG+ E L+ I +V L+ + DE P+SPGM +HYAP+ S+ + Sbjct: 196 PTILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255 Query: 239 RAIHVNPREALIRFGNVPIK---NIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 + + +E + G + + +I NA + L+ L A L++ ++ D S Sbjct: 256 QRLVDEKKEEGFKVGVLTTEEYHHIYNADVVLSCGVRSDLASVATKLYDVLRTFDASEVD 315 Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320 I S PN G+G AI NRL +AA Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAG 340 >gi|210614126|ref|ZP_03290062.1| hypothetical protein CLONEX_02275 [Clostridium nexile DSM 1787] gi|210150827|gb|EEA81835.1| hypothetical protein CLONEX_02275 [Clostridium nexile DSM 1787] Length = 521 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 115/338 (34%), Positives = 174/338 (51%), Gaps = 33/338 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D+ + +A E L+ G +A PTETVYGL ++ N A R+ YE K RP+ NPLI H++DI Sbjct: 28 DTEIIAEAGEILEKGGLVAFPTETVYGLGANALNEEAARKTYEAKGRPSDNPLIVHIADI 87 Query: 68 SMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCG-FT 124 + + P + + FWPGPLTL+ + + + PL +T L+T R+P Sbjct: 88 QALDEIVEFIPEKAKSIVEKFWPGPLTLIFE---KSGVVPLGTTGGLQTVAVRMPEDEIA 144 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + LI G ++ PSAN SG+ S T+ +H+ + + +I +IIDGG +IG+ESTIV++ Sbjct: 145 RALIRAGGGYVSAPSANTSGRPSPTSAEHV-AEDLDGKIDMIIDGGNVEIGVESTIVDMT 203 Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVDETS-------TPQSPGMLKSHYAPRSQV- 236 E + ILRPG + E L+ I E VD T+ P++PGM HYAP++Q+ Sbjct: 204 VEPPM-ILRPGAITKEMLEEVIG---EVAVDRTTLSETSDAAPKAPGMKYRHYAPKAQLV 259 Query: 237 --------RLRAIHVNPREALIRFGNVPI------KNIENAIISLNLSKTGKLKEAAFNL 282 ++AI E + R V I N+ I ++ A NL Sbjct: 260 IVNGAPLEAVKAIRQLAYEQMRRGNQVGIIATSETANLYTNGIVKSIGTRANENSIAKNL 319 Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + ++ DD + I + G+G AI NRL +AA Sbjct: 320 YKVLREFDDEEVAYIFSEAFAVEGIGNAIMNRLIKAAG 357 >gi|14602037|ref|NP_148583.1| putative translation factor [Aeropyrum pernix K1] gi|5106101|dbj|BAA81412.1| putative translation factor [Aeropyrum pernix K1] Length = 367 Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 118/353 (33%), Positives = 174/353 (49%), Gaps = 48/353 (13%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D A+ +A E L G +A PTETVYGL D+ NP A R++E+K RP NPLI HVS + Sbjct: 22 DRRAIERAAEVLRRGGLVAFPTETVYGLGADALNPRAAARIFEVKGRPPDNPLIVHVSSL 81 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKK 126 M + A + +L L + WPGPLTLVL + + TA L+T R+P + Sbjct: 82 EMARTVAEIPGKALRLVEKLWPGPLTLVLP--RKPVVPDIVTAGLETVAVRMPAHKVALE 139 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L++ G P+A PSAN SG+ S T+ +H++ C + +I+D G + G+ESTI+++ Sbjct: 140 LVKAAGRPVAAPSANPSGRPSPTSGEHVIRDLDCM-VDVILDAGETYFGVESTIIDLTRT 198 Query: 187 KKVRILRPGGLEIETLKRAISVEL-----EYCVDETSTPQSPGMLKSHYAP--------- 232 V +LRPG + +E L+R + ++ + P +PGM HYAP Sbjct: 199 PPV-LLRPGPIPVEVLERLLEEKILVPPEARGLRAADRPLAPGMKYRHYAPDTPLILVDT 257 Query: 233 ---------RSQVR-------LRAIHVNPRE------ALIRFGNVPIKNIENAIISLNLS 270 + VR LR V P E L+R ++ +E A I L Sbjct: 258 SPGAVERIVEAAVREVARARGLRVALVGPDELVDVVALLLR-----LRGVEPAAI-FRLG 311 Query: 271 KTGKLKEAAFNLFNYMKIADDSGASSIAFS-SIPNHGLGIAINNRLERAAAPR 322 AA LF ++ D+ G +A P G+G+A+ NRL +AA+ R Sbjct: 312 PLADTTVAARRLFKTLRRIDELGNIDVAIVLPFPERGIGLAVMNRLRKAASRR 364 >gi|260584607|ref|ZP_05852353.1| Sua5/YciO/YrdC/YwlC family protein [Granulicatella elegans ATCC 700633] gi|260157630|gb|EEW92700.1| Sua5/YciO/YrdC/YwlC family protein [Granulicatella elegans ATCC 700633] Length = 341 Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 118/334 (35%), Positives = 176/334 (52%), Gaps = 22/334 (6%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I L +A L G +A PTETVYGL + + A+ +++E K RP+ NPLI HV Sbjct: 5 IFHQETLDQAATLLKQGEVVAFPTETVYGLGAIATSQEAVLKVFEAKGRPSDNPLIVHVH 64 Query: 66 DISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIH-PLSTANLKTACFRVP-CG 122 + V P S LAK FWPGPLT++L + I+ P +A L T FR+P Sbjct: 65 SVDHVMDTVEEFPESAKLLAKHFWPGPLTMILK--AKPGIYAPALSAGLPTVSFRMPNHE 122 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 T LIE G PL PSAN+S + S T V+H++ + I I+DGG + +G+EST+++ Sbjct: 123 LTLSLIEQVGIPLVGPSANQSTKPSPTRVEHVV-EDMDGRIAGIVDGGDTSVGVESTVID 181 Query: 183 VQCEKKVRILRPGGLEIETLKRAISVELEY---CVDETSTPQSPGMLKSHYAPRSQVRLR 239 + E+ ILRPG + E ++ I +EY E TP+SPGM HYAP + V + Sbjct: 182 LTNEEGPVILRPGVITKEEIEPIIGPLVEYMKTTTGEKVTPKSPGMKYRHYAPTTPVVVV 241 Query: 240 AIHVNPREALI-----RFGNVPIKNIENAI--ISLNLSKTGKLKEA------AFNLFNYM 286 V +LI + V + +N + + LN+S++ L E + +LFN + Sbjct: 242 EGSVEFWHSLIEEYQEQGEKVAVMATDNILDEVRLNVSESYSLGEKDSVADMSHHLFNAL 301 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + D + A+ I + G G+A NRLE+A++ Sbjct: 302 RSLDHTDATIILAQASVKEGSGLAYMNRLEKASS 335 >gi|328555401|gb|AEB25893.1| ribosome maturation factor; RNA binding protein [Bacillus amyloliquefaciens TA208] gi|328913773|gb|AEB65369.1| putative ribosome maturation factor; RNA binding protein [Bacillus amyloliquefaciens LL3] Length = 346 Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 116/332 (34%), Positives = 172/332 (51%), Gaps = 19/332 (5%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 +S TD + +A E L +A PTETVYGL ++ N A+ ++YE K RP+ NPLI H Sbjct: 14 LSTTDPQ-ITQAAELLRQNEVVAFPTETVYGLGANAENTEAVTKIYEAKGRPSDNPLIVH 72 Query: 64 VSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 +SDI + + S V + L KLFWPG LTLVL + P TA L+T R+P Sbjct: 73 ISDIGQLDRFISHVPETAKKLMKLFWPGALTLVLPCKPGV-LSPRVTAGLETVAVRMPDH 131 Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 LI + G P+A PSAN SG+ S T +H+ + + I I+DGG + IG+EST++ Sbjct: 132 PVALALISSAGLPIAAPSANLSGKPSPTKAEHV-AHDLNGRIAGIVDGGATGIGVESTVL 190 Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQVRL- 238 + ++ V +LRPGG+ E ++ A L + +E P SPGM +HYAP + + + Sbjct: 191 SCAGKQPV-LLRPGGVTKEQIESAAGPVLVDKGLTEEDEVPISPGMKYTHYAPSAPLAVA 249 Query: 239 ----RAIHVNPREALIRFGNVPIKNIENAIISLNL------SKTGKLKEAAFNLFNYMKI 288 R I E R + I E S + L+ A L++ ++ Sbjct: 250 DGGARRIQELADEYKRRGKRIGILTTEENADSYQADFIKVCGRRADLETVASALYDALRS 309 Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 D++ I S P+ G+G+A+ NRL +AA Sbjct: 310 FDEAEVDMIISESFPDTGVGLAVMNRLMKAAG 341 >gi|229087815|ref|ZP_04219931.1| hypothetical protein bcere0022_43720 [Bacillus cereus Rock3-44] gi|228695490|gb|EEL48359.1| hypothetical protein bcere0022_43720 [Bacillus cereus Rock3-44] Length = 347 Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 116/329 (35%), Positives = 170/329 (51%), Gaps = 21/329 (6%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L++A L IA PTETVYGL ++ N AI +++E K RP+ NPLI H+ Sbjct: 17 DYPQLQEAARLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGAR 76 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 S + + + P++ L K FWPGPLT++L I TA L T R+P Sbjct: 77 SQLGEIVREITPVAEELMKHFWPGPLTIILP--KKDGISEKVTAGLDTVGVRMPDHPVAL 134 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LIE P+A PSANRSG+ S T H+ + ++I I+DGG + +G+EST+V+ C Sbjct: 135 ALIEAANVPVAAPSANRSGRPSPTLAHHVY-EDLNEKIAGIVDGGATGVGVESTVVD--C 191 Query: 186 EKKV-RILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPR--------S 234 +V ILRPGG+ E L+ I V L+ + DE P++PGM +HYAP+ S Sbjct: 192 TSEVPTILRPGGITKEQLEEVIGIVSLDPALKDEKEKPKAPGMKYTHYAPKAPLSIVEGS 251 Query: 235 QVRLRAIHVNPREALIRFG---NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291 + ++ + +E G +++ A + L+ L A L++ ++ D Sbjct: 252 RDFIQQLVDKKKEEGYTVGVLTTEEYQHVYKADVVLSCGVRSDLASVATKLYDVLRTFDA 311 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320 S I S PN G+G AI NRL +AA Sbjct: 312 SEVDVIFSESFPNEGIGNAIMNRLTKAAG 340 >gi|228936610|ref|ZP_04099404.1| hypothetical protein bthur0009_50450 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228823045|gb|EEM68883.1| hypothetical protein bthur0009_50450 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 346 Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 116/325 (35%), Positives = 172/325 (52%), Gaps = 21/325 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++A + L IA PTETVYGL ++ N AI +++E K RP+ NPLI H+ S + Sbjct: 21 LQEAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLD 80 Query: 72 KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P++ L + FWPGPLT++L I TA L T R+P LIE Sbjct: 81 GIVKEIPPVAEKLMEHFWPGPLTIILP--RKEGISEKVTAGLHTVGVRMPDHPVALALIE 138 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+A PSANRSG+ S T H+ + ++I I+DGG + +G+EST+++ C V Sbjct: 139 EANVPVAAPSANRSGRPSPTLASHVY-EDLNEKIAGIVDGGATGVGVESTVID--CTSAV 195 Query: 190 -RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPR--------SQVRL 238 ILRPGG+ E L+ I +V L+ + DE P+SPGM +HYAP+ S+ + Sbjct: 196 PTILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255 Query: 239 RAIHVNPREALIRFGNVPIK---NIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 + + +E + G + + +I NA + L+ L A L++ ++ D S Sbjct: 256 QRLVDEKKEEGFKVGVLTTEEYHHIYNADVVLSCGVRSDLASIATKLYDVLRTFDASEVD 315 Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320 I S PN G+G AI NRL +AA Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAG 340 >gi|229176001|ref|ZP_04303497.1| hypothetical protein bcere0006_50710 [Bacillus cereus MM3] gi|228607494|gb|EEK64820.1| hypothetical protein bcere0006_50710 [Bacillus cereus MM3] Length = 347 Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 115/325 (35%), Positives = 172/325 (52%), Gaps = 21/325 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++A + L IA PTETVYGL ++ N AI +++E K RP+ NPLI H+ S + Sbjct: 21 LQEAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLD 80 Query: 72 KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P++ L + FWPGPLT++L I TA L T R+P LIE Sbjct: 81 GIVKEIPPVAEKLMEHFWPGPLTIILP--RKEGISEKVTAGLNTVGVRMPDHPVALALIE 138 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+A PSANRSG+ S T H+ + ++I I+DGG + +G+EST+++ C +V Sbjct: 139 EANVPVAAPSANRSGRPSPTLASHVY-EDLNEKIAGIVDGGATGVGVESTVID--CTSEV 195 Query: 190 -RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPR--------SQVRL 238 ILRPGG+ E L+ I +V L+ + DE P+SPGM +HYAP+ S+ + Sbjct: 196 PTILRPGGITKEQLEAVIGNVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255 Query: 239 RAIHVNPREALIRFG---NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 + I +E + G +++ +A + L+ L A L++ ++ D S Sbjct: 256 QLIVDKKKEEGFKVGVLTTEEYQHVYSADVVLSCGVRSDLASVATKLYDVLRTFDASEVD 315 Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320 I S PN G+G AI NRL +AA Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAG 340 >gi|220932631|ref|YP_002509539.1| Sua5/YciO/YrdC/YwlC family protein [Halothermothrix orenii H 168] gi|219993941|gb|ACL70544.1| Sua5/YciO/YrdC/YwlC family protein [Halothermothrix orenii H 168] Length = 364 Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 116/349 (33%), Positives = 173/349 (49%), Gaps = 43/349 (12%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 I+ + +++A+R+ L G +A PTETVYGL D+ + +A++++++ K RP NPLI Sbjct: 21 DILKLKENDAIREGASLLQKGEVVAFPTETVYGLGADATSESAVKKIFKAKGRPRDNPLI 80 Query: 62 CHVSDISMVKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 H+ ++ + +PLS L K FWPGPLTL+ + T I ++TA L++ R Sbjct: 81 VHIGEMDQLYDIIK-NPLSDTTRRLIKHFWPGPLTLIFEKKET--IPGVTTAGLESVAVR 137 Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 P + LI P+A PSAN SG S T +H+ + IP IIDGG S +G+E Sbjct: 138 FPDNPVARALIGLSSVPVAAPSANLSGSPSPTRAEHVF-KDLKGRIPFIIDGGPSSVGVE 196 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDET-STPQSPGMLKSHYAPRSQV 236 ST+++++ V ILRPGG+ E + E +E P SPGM HY+PR+ + Sbjct: 197 STVIDIRSGNPV-ILRPGGVTREEIAEVTGFSPENPDNEDRKKPLSPGMKYRHYSPRTPL 255 Query: 237 RLRAIH--------------------------VNPREALIRFGNVPIKNIENAIISLNLS 270 L I + +E+L F IK + I S N Sbjct: 256 YLIEIRDFDKIRDVGEKYKGYNLALVITSETDMVLKESLKSFSTTGIKKV--VIGSRN-- 311 Query: 271 KTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 K+ A +F+ ++ D I F +IP GLG AI NRL +AA Sbjct: 312 ---DFKKIAACMFDILRNLDTDNIDLIFFETIPEKGLGEAIMNRLAKAA 357 >gi|308175423|ref|YP_003922128.1| ribosome maturation factor [Bacillus amyloliquefaciens DSM 7] gi|307608287|emb|CBI44658.1| putative ribosome maturation factor; RNA binding protein [Bacillus amyloliquefaciens DSM 7] Length = 346 Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 116/332 (34%), Positives = 172/332 (51%), Gaps = 19/332 (5%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 +S TD + +A E L +A PTETVYGL ++ N A+ ++YE K RP+ NPLI H Sbjct: 14 LSTTDPQ-ITQAAELLRQNEVVAFPTETVYGLGANAENTEAVTKIYEAKGRPSDNPLIVH 72 Query: 64 VSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 +SDI + + S P + L KLFWPG LTLVL + P TA L+T R+P Sbjct: 73 ISDIGQLDRFISHIPETAKKLMKLFWPGALTLVLPCKPGV-LSPRVTAGLETVAVRMPDH 131 Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 LI + G P+A PSAN SG+ S T +H+ + + I I+DGG + IG+EST++ Sbjct: 132 PVALALISSAGLPIAAPSANLSGKPSPTKAEHV-AHDLNGRIAGIVDGGATGIGVESTVL 190 Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQVRL- 238 + ++ V +LRPGG+ E ++ A L + +E P SPGM +HYAP + + + Sbjct: 191 SCAGKQPV-LLRPGGVTKEQIESAAGPVLVDKGLTEEDEVPISPGMKYTHYAPSAPLAVA 249 Query: 239 ----RAIHVNPREALIRFGNVPIKNIENAIISLNL------SKTGKLKEAAFNLFNYMKI 288 R I E R + I E S + L+ A L++ ++ Sbjct: 250 DGGARRIQELADEYKSRGKRIGILTTEENAESYQADFIKVCGRRADLETVASALYDALRS 309 Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 D++ I S P+ G+G+A+ NRL +AA Sbjct: 310 FDEAEVDMIISESFPDTGVGLAVMNRLMKAAG 341 >gi|304317927|ref|YP_003853072.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302779429|gb|ADL69988.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 349 Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 108/336 (32%), Positives = 180/336 (53%), Gaps = 28/336 (8%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + +A L +G +A PTETVYG+ +S NP A+ +++ K RP NPLI H+++ Sbjct: 13 DIGLIDEAANILISGGLVAFPTETVYGIGANSLNPDAVAKIFIAKGRPQDNPLILHIAEF 72 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + K+A +V +L + +LFWPGPLT++ + + + P++TA + T R+P Sbjct: 73 QDLFKYAKNVPDNALKMMELFWPGPLTMIFE--KSDIVPPINTAGMDTVAIRMPSNTIAH 130 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LI+ G P++ PSAN SG+ S T+ H++ + + + +IIDGG +G+EST+V++ Sbjct: 131 TLIKRAGIPVSAPSANLSGKPSPTDASHVI-NDLYGSVDMIIDGGSCDVGVESTVVDMTG 189 Query: 186 EKKVRILRPGGLEIETLKRAI-SVELEYCVDETST----PQSPGMLKSHYAPRSQVRLRA 240 E + ILRPGG+ E + AI SVE++ V + P++PGM HY+P ++V + Sbjct: 190 EIPI-ILRPGGITKEMIMNAIGSVEVDPIVYKKPAKDLRPKAPGMKYKHYSPDAEVFIVK 248 Query: 241 IHV----------------NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFN 284 ++ N ++ I + N ++ L + + + A NLFN Sbjct: 249 GNLGDVIKKIQELTEFQLNNGKKVGIMATEQTCEKYRNGVV-LVVGDRERPETIAKNLFN 307 Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ D G + G+G+AI NRLE+AA Sbjct: 308 CLREFDKKGVDIVYAEGFDYSGIGLAIMNRLEKAAG 343 >gi|118480360|ref|YP_897511.1| translation factor SUA5 [Bacillus thuringiensis str. Al Hakam] gi|196042389|ref|ZP_03109654.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus NVH0597-99] gi|118419585|gb|ABK88004.1| translation factor SUA5 [Bacillus thuringiensis str. Al Hakam] gi|196026781|gb|EDX65423.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus NVH0597-99] Length = 346 Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 116/325 (35%), Positives = 172/325 (52%), Gaps = 21/325 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++A + L IA PTETVYGL ++ N AI +++E K RP+ NPLI H+ S + Sbjct: 21 LQEAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLD 80 Query: 72 KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P++ L + FWPGPLT++L I TA L T R+P LIE Sbjct: 81 GIVKEIPPVAEKLMEHFWPGPLTIILP--RKEGISEKVTAGLHTVGVRMPDHPVALALIE 138 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+A PSANRSG+ S T H+ + ++I I+DGG + +G+EST+++ C V Sbjct: 139 EANVPVAAPSANRSGRPSPTLASHVY-EDLNEKIAGIVDGGATGVGVESTVID--CTSAV 195 Query: 190 -RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPR--------SQVRL 238 ILRPGG+ E L+ I +V L+ + DE P+SPGM +HYAP+ S+ + Sbjct: 196 PTILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVKGSREFI 255 Query: 239 RAIHVNPREALIRFGNVPIK---NIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 + + +E + G + + +I NA + L+ L A L++ ++ D S Sbjct: 256 QRLVDEKKEEGFKVGVLTTEEYHHIYNADVVLSCGVRSDLASIATKLYDVLRTFDASEVD 315 Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320 I S PN G+G AI NRL +AA Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAG 340 >gi|229158887|ref|ZP_04286944.1| hypothetical protein bcere0010_50590 [Bacillus cereus ATCC 4342] gi|228624498|gb|EEK81268.1| hypothetical protein bcere0010_50590 [Bacillus cereus ATCC 4342] Length = 347 Score = 160 bits (405), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 115/325 (35%), Positives = 171/325 (52%), Gaps = 21/325 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++A + L IA PTETVYGL ++ N AI +++E K RP+ NPLI H+ S + Sbjct: 21 LQEAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLD 80 Query: 72 KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P++ L + FWPGPLT++L I TA L T R+P LIE Sbjct: 81 GIVKEIPPVAEKLMEHFWPGPLTIILP--RKEGISERVTAGLNTVGVRMPDHPVALALIE 138 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+A PSANRSG+ S T H+ + ++I I+DGG + +G+EST+++ C V Sbjct: 139 EANVPVAAPSANRSGRPSPTLASHVY-EDLNEKIAGIVDGGATGVGVESTVID--CTSAV 195 Query: 190 -RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPR--------SQVRL 238 ILRPGG+ E L+ I +V L+ + DE P+SPGM +HYAP+ S+ + Sbjct: 196 PTILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255 Query: 239 RAIHVNPREALIRFG---NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 + I +E + G +++ +A + L+ L A L++ ++ D S Sbjct: 256 QLIVDKKKEEGFKVGVLTTEEYQHVYSADVVLSCGVRSDLASVATKLYDVLRTFDASEVD 315 Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320 I S PN G+G AI NRL +AA Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAG 340 >gi|304407777|ref|ZP_07389428.1| Sua5/YciO/YrdC/YwlC family protein [Paenibacillus curdlanolyticus YK9] gi|304343260|gb|EFM09103.1| Sua5/YciO/YrdC/YwlC family protein [Paenibacillus curdlanolyticus YK9] Length = 385 Score = 160 bits (405), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 119/357 (33%), Positives = 169/357 (47%), Gaps = 63/357 (17%) Query: 18 FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI----SMVKKH 73 L G +A PTETVYGL D+R +A+ ++ K RP+ NPLI H++D ++VK + Sbjct: 31 LLRTGGTVAFPTETVYGLGADARQTSAVENVFVAKGRPSDNPLIVHIADEAQLRTLVKPY 90 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYG 132 + L + FWPGPLTLVL L + P TA L T R+P +LI G Sbjct: 91 GDTE---RALMRRFWPGPLTLVLPALEGA-VSPRVTAGLDTVAVRMPDHAVALRLIAESG 146 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192 P+A PSANRSG+ S T +H+ + I I+DGG + +GLEST+V V+ VRIL Sbjct: 147 CPVAAPSANRSGRPSPTVAEHV-REDLNGRIDGIVDGGPTGVGLESTVVQVEAPGVVRIL 205 Query: 193 RPGGLEIETLKRAI-------SVELEYCVDETSTPQ-----------------------S 222 RPGG+ L+ A S+E D T PQ S Sbjct: 206 RPGGITPVQLREAAPTVLLDESLEALERKDATMVPQERAVVSDSPAVGTATAVPAAAPRS 265 Query: 223 PGMLKSHYAPRSQVRLRAIHVNPRE-------------------ALIRFGNVPIKNIENA 263 PGM +HYAPR ++L +H P + ++ + +A Sbjct: 266 PGMKYTHYAPRGSMQL--VHGEPDDVRAYITKALQAAAAEGEITGVLTYDEHAASYHADA 323 Query: 264 IISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 +IS KL+ AA L+ ++ D G I + + G+G+A+ NRLE+AA Sbjct: 324 VISCG--SLMKLETAAQGLYAALREFDARGVQRIWAEACSSDGIGLALMNRLEKAAG 378 >gi|153853663|ref|ZP_01995043.1| hypothetical protein DORLON_01034 [Dorea longicatena DSM 13814] gi|149753818|gb|EDM63749.1| hypothetical protein DORLON_01034 [Dorea longicatena DSM 13814] Length = 353 Score = 160 bits (405), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 112/341 (32%), Positives = 175/341 (51%), Gaps = 39/341 (11%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 +++ +R+A L G +A PTETVYGL D+ N A +++Y K RP+ NPLI H++++ Sbjct: 17 NTDIIREAGRILKEGGLVAFPTETVYGLGADALNEDAAKKIYAAKGRPSDNPLIIHITNM 76 Query: 68 SMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCG-FT 124 + K S P ++ +A+ +WPGPLT++ + +DI P +T L T R+P Sbjct: 77 KALDKIVSEVPEKAVKVAEKYWPGPLTMI---FNKSDIVPYGTTGGLDTVAVRMPVDEIA 133 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 +++I+ G +A PSAN SG+ S T +H+ + + + +I+DGG +IG+ESTI++V Sbjct: 134 REVIDAGGGYIAAPSANTSGRPSPTTAQHV-AEDLTGRVDMIVDGGAVEIGVESTILDVT 192 Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVDET-------STPQSPGMLKSHYAPRSQVR 237 E + ILRPG + E + I E VD T P++PGM HYAP++ + Sbjct: 193 VEPPM-ILRPGAITKEMFEEVIG---EVTVDRTLIRPDSKQVPKAPGMKYRHYAPKADL- 247 Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNL---------SKTGKLK---------EAA 279 I P E +++ N K A + + K+G +K A Sbjct: 248 --TIIEGPLEKVVKEINKRAKEKSEAGYKVGVIGTEETVADYKSGDVKCIGTRADESTIA 305 Query: 280 FNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 NLF ++ DD I S G+G AI NRL +AA Sbjct: 306 ANLFRILREFDDDQVDYIYSESFDTAGIGSAIMNRLLKAAG 346 >gi|228988550|ref|ZP_04148637.1| hypothetical protein bthur0001_52050 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771167|gb|EEM19646.1| hypothetical protein bthur0001_52050 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 347 Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 115/325 (35%), Positives = 171/325 (52%), Gaps = 21/325 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++A + L IA PTETVYGL ++ N AI +++E K RP+ NPLI H+ S + Sbjct: 21 LQEAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLD 80 Query: 72 KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P++ L + FWPGPLT++L I TA L T R+P LIE Sbjct: 81 GIVKEIPPVAEKLMEHFWPGPLTIILP--RKEGISERVTAGLNTVGVRMPDHPVALALIE 138 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+A PSANRSG+ S T H+ + ++I I+DGG + +G+EST+++ C V Sbjct: 139 EANVPVAAPSANRSGRPSPTLASHVY-EDLNEKIAGIVDGGATGVGVESTVID--CTSAV 195 Query: 190 -RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPR--------SQVRL 238 ILRPGG+ E L+ I +V L+ + DE P+SPGM +HYAP+ S+ + Sbjct: 196 PTILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255 Query: 239 RAIHVNPREALIRFG---NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 + I +E + G +++ +A + L+ L A L++ ++ D S Sbjct: 256 QLIVDKKKEEGFKVGVLTTEEYQHVYSADVVLSCGVRSDLASVATKLYDVLRTFDASEVD 315 Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320 I S PN G+G AI NRL +AA Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAG 340 >gi|226315059|ref|YP_002774955.1| hypothetical protein BBR47_54740 [Brevibacillus brevis NBRC 100599] gi|226098009|dbj|BAH46451.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 359 Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 109/332 (32%), Positives = 166/332 (50%), Gaps = 28/332 (8%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A FL G +A PTETVYGL ++ + A+ +++ K RP+ NPLI H+ + A Sbjct: 28 AARFLREGAVVAFPTETVYGLGANALSNEAVEKIFTAKGRPSDNPLIVHIGAWDQLSTVA 87 Query: 75 SVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132 S P L + FWPGPLT++L T + L TA L + R+P LI+ G Sbjct: 88 SEVPEKGKKLMEAFWPGPLTVILP--KTDQVASLVTAGLDSVGVRMPDHPIALALIKEAG 145 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192 P+A PSANRSG+ S T H+L + + + ++DGG + +G+EST+++V + + IL Sbjct: 146 VPIAAPSANRSGRPSPTTAAHVL-ADLDGRVAGVVDGGATGVGVESTVIDVTQDPPM-IL 203 Query: 193 RPGGLEIETLKRAIS-VELE--YCVDETSTPQSPGMLKSHYAPRSQVRLRA--------- 240 RPGG+ E ++ I VEL+ + V P+SPGM +HYAP ++ L + Sbjct: 204 RPGGITREQMEPVIGYVELDPSFQVGAAEAPRSPGMKYTHYAPEGEMWLVSGECEKVRGK 263 Query: 241 ---------IHVNPREALIRFGNVPIKNIENAI-ISLNLSKTGKLKEAAFNLFNYMKIAD 290 H L P ++ + L + L+ A L+ ++ D Sbjct: 264 MEDMLQQAKQHGQKTGVLATEETAPFWQSHASVDVVLVVGSQSDLEGVAQQLYAVLREFD 323 Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 D I + P +GLG+A+ NRLE+AA R Sbjct: 324 DQEVQYIVGETFPRNGLGMAVMNRLEKAAGGR 355 >gi|300172698|ref|YP_003771863.1| putative translation factor [Leuconostoc gasicomitatum LMG 18811] gi|299887076|emb|CBL91044.1| Putative translation factor (Sua5 family) [Leuconostoc gasicomitatum LMG 18811] Length = 335 Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 108/327 (33%), Positives = 171/327 (52%), Gaps = 20/327 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 SN +++A E L AG +A PTETVYGL D+ N TA+++++ K RPA NPLI ++D Sbjct: 8 SNDIKRAGELLRAGEVVAFPTETVYGLGADATNETAVKKVFTAKGRPADNPLIMTIADEK 67 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + + + L FWPG LT++L + + + T L+T FR+P + + Sbjct: 68 QLDEFVLISQAARQLMTAFWPGSLTIILP-IKPKKVAMIVTGGLQTVAFRLPDNDVARVV 126 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I G P+ PSAN SG+ S T +H+ + +I I+D G ++IG+EST++++ Sbjct: 127 IRDAGVPIVGPSANTSGKPSPTTAQHVW-HDMNGKIAAIVDDGPTQIGVESTVIDMSANV 185 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETS-----TPQSPGMLKSHYAPRSQV----RL 238 ILRPG + + L+ + V + TS TP++PGM HYAP +V RL Sbjct: 186 PT-ILRPGAVTQQQLQDVLGVTVIDATSTTSVASDVTPKAPGMKYRHYAPDKKVVMFDRL 244 Query: 239 RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKE----AAFNLFNYMKIADDSG- 293 AI + +L V ++ ++ L+L ++ L E A LF ++ DD Sbjct: 245 DAIDL--MHSLQTHDVVMAQDTTIEVMQLSLEQSWSLGETLETATEQLFAGLRFYDDEAQ 302 Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAA 320 ++I + G+G A NNRL +AA Sbjct: 303 VATIYVEKMSPIGIGKAFNNRLAKAAG 329 >gi|295092488|emb|CBK78595.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium cf. saccharolyticum K10] Length = 377 Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 121/343 (35%), Positives = 174/343 (50%), Gaps = 34/343 (9%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 ++ D L +A L G +A PTETVYGL ++ + TA RR+YE K RP+ NPLI H Sbjct: 37 LTQEDRAVLAEAAAILREGGLVAFPTETVYGLGANALDETAARRIYEAKGRPSDNPLIAH 96 Query: 64 VSDI-SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPC 121 ++D ++ A + LA+ FWPGPLT+V + + P +T L+T R+P Sbjct: 97 IADFEALAPLTAEIPEAGRKLAEAFWPGPLTMV---FKKSGVVPHGTTGGLETVAVRMPS 153 Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 ++LI G P+A PSAN SG+ S T +H+L K I +I+DGG IG+ESTI Sbjct: 154 DPVARELIRLAGVPIAAPSANTSGRPSPTRAEHVLQDMDGK-IEMIVDGGPVGIGVESTI 212 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETST--------PQSPGMLKSHYAP 232 V+V E+ +LRPG + +E L+ SV E VD T P++PGM HYAP Sbjct: 213 VDV-TEEIPTLLRPGAVTMEMLR---SVLGETAVDPAITGPMRADIKPKAPGMKYRHYAP 268 Query: 233 RSQV------------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTG-KLKEA- 278 ++ + R+ A+ A R G + + ++ + L G + EA Sbjct: 269 KADLTLVEGETDAVVSRINALAAEKLGAGQRVGIICTEETKDRYPAGILKSIGMRANEAT 328 Query: 279 -AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 A NL+ ++ DD I S LG AI NRL +AA Sbjct: 329 VAHNLYAVLREFDDLEVDCIFSESFQTDDLGQAIMNRLNKAAG 371 >gi|229033958|ref|ZP_04188912.1| hypothetical protein bcere0028_49880 [Bacillus cereus AH1271] gi|228728384|gb|EEL79406.1| hypothetical protein bcere0028_49880 [Bacillus cereus AH1271] Length = 346 Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 115/327 (35%), Positives = 174/327 (53%), Gaps = 25/327 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV---SDIS 68 L++A + L IA PTETVYGL ++ N AI +++E K RP+ NPLI H+ S + Sbjct: 21 LQEAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLD 80 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 ++ K + P++ L + FWPGPLT++L I TA L T R+P L Sbjct: 81 VIVKE--IPPVAEKLMEHFWPGPLTIILP--RKEGISEKVTAGLNTVGVRMPDHPVALAL 136 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 IE P+A PSANRSG+ S T H+ + ++I I+DGG + +G+EST+++ C Sbjct: 137 IEEANVPVAAPSANRSGRPSPTLASHVY-EDLNEKIAGIVDGGATGVGVESTVID--CTS 193 Query: 188 KV-RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPR--------SQV 236 V ILRPGG+ E L+ I +V L+ + DE P+SPGM +HYAP+ S+ Sbjct: 194 AVPTILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSRE 253 Query: 237 RLRAIHVNPREALIRFG---NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293 ++ + +E + G +++ +A + L+ L A L++ ++ D S Sbjct: 254 FIQRLVDEKKEEGFKVGVLTTEEYQHVYSADVVLSCGVRSDLASVATKLYDVLRTFDASE 313 Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAA 320 I S PN G+G AI NRL +AA Sbjct: 314 VDVIFSESFPNEGIGNAIMNRLTKAAG 340 >gi|257882294|ref|ZP_05661947.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 1,231,502] gi|293563063|ref|ZP_06677529.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1162] gi|293567647|ref|ZP_06678990.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1071] gi|294623633|ref|ZP_06702471.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium U0317] gi|314937736|ref|ZP_07845058.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX0133a04] gi|314942366|ref|ZP_07849213.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX0133C] gi|314947684|ref|ZP_07851093.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX0082] gi|314952115|ref|ZP_07855134.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX0133A] gi|314992374|ref|ZP_07857806.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX0133B] gi|314997439|ref|ZP_07862386.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX0133a01] gi|257817952|gb|EEV45280.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 1,231,502] gi|291589582|gb|EFF21387.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1071] gi|291596959|gb|EFF28172.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium U0317] gi|291604977|gb|EFF34445.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1162] gi|313588448|gb|EFR67293.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX0133a01] gi|313593099|gb|EFR71944.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX0133B] gi|313595734|gb|EFR74579.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX0133A] gi|313598879|gb|EFR77724.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX0133C] gi|313642874|gb|EFS07454.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX0133a04] gi|313645925|gb|EFS10505.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX0082] Length = 341 Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 111/332 (33%), Positives = 174/332 (52%), Gaps = 22/332 (6%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L++A E L G +A PTETVYGL ++ P A+++++ +K RP NPLI HV+ Sbjct: 7 DETELQEAAEALKEGELVAFPTETVYGLGANALLPNAVKKVFSVKGRPQDNPLIVHVASF 66 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 VK++ + P + + K FWPGPLTL+ + T + + T L TA FR+P T Sbjct: 67 EQVKEYVDNFHPAAEKIVKNFWPGPLTLIFKIKKDT-LPSVVTGGLSTAAFRIPDNKKTL 125 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 ++IE G PL PSAN SG+ S T H+ + +I IID G ++IG+EST++++ Sbjct: 126 EVIELSGVPLVGPSANTSGKPSPTTADHVY-HDLQGKITGIIDDGATRIGVESTVLDLSD 184 Query: 186 EKKV-RILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRL--- 238 + ILRPG + E ++ I + ++ V E TP++PGM HY+P ++V + Sbjct: 185 PTAMPMILRPGAVTKEQIEAVIESPVAIDQHLVKENETPKAPGMKYKHYSPDTRVLMVRD 244 Query: 239 ----RAIHVNPREALIRFGNVPIKNIENAI----ISLNLSKTGKLKEAAFNLFNYMKIAD 290 A+ + IR G + I + + ++ + ++ AA LF ++ D Sbjct: 245 GDWSTAVQW-AKNKKIRAGVIASPEIADQVRTDTAAVYMYNDNSVEAAAKGLFAGLRGLD 303 Query: 291 DS--GASSIAFSSIPNHGLGIAINNRLERAAA 320 + G I P GLG A NRL++AA Sbjct: 304 EPTLGLDLIFVQVYPETGLGNAYMNRLKKAAG 335 >gi|88802068|ref|ZP_01117596.1| hypothetical protein PI23P_05377 [Polaribacter irgensii 23-P] gi|88782726|gb|EAR13903.1| hypothetical protein PI23P_05377 [Polaribacter irgensii 23-P] Length = 318 Score = 160 bits (404), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 125/331 (37%), Positives = 168/331 (50%), Gaps = 32/331 (9%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 MSI ++ + KA + L +AIPTETVYGLA + + AI R++ KKRP NPLI H Sbjct: 1 MSIISTD-IEKAVQLLTDAQLVAIPTETVYGLAGNIYSEKAIHRIFSTKKRPFFNPLIVH 59 Query: 64 VSDISMVKKHASVDPLSLH-------LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 + I AS++ + H LA FWPG LTLVL I L TA T Sbjct: 60 IPSI------ASLESIVTHIPEKAKLLAAAFWPGSLTLVLK--KNRSIPDLITAGKDTVA 111 Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 RVP T L++ PLA PSAN G IS T H+ + +I +I+DGG G Sbjct: 112 VRVPNHPVTLALLQQLPFPLAAPSANPFGSISPTKAAHV-EAYFKNDIQMILDGGSCANG 170 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQ 235 +ESTI+ + + + I R G L +E ++ A+ ++ E P++PGML HYAP + Sbjct: 171 IESTIIGFENDTPI-IYRLGALALEDIE-AVVGKITIKNKEEEHPEAPGMLARHYAPNTN 228 Query: 236 VRLRAIHVNPREALI------RFGNVPIKNIENA--IISLNLSKTGKLKEAAFNLFNYMK 287 L VN A I + G + K NA I + LSKTG ++EAA NL+ M Sbjct: 229 TFL----VNDVAAEIQKYTNKKIGVLVFKTSLNAPNISEIILSKTGSMQEAAANLYAAMH 284 Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERA 318 D I P GLG +IN+RL+RA Sbjct: 285 ALDAQELDLIIAEKFPEVGLGKSINDRLQRA 315 >gi|15616333|ref|NP_244638.1| hypothetical protein BH3771 [Bacillus halodurans C-125] gi|10176395|dbj|BAB07490.1| BH3771 [Bacillus halodurans C-125] Length = 348 Score = 159 bits (403), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 107/329 (32%), Positives = 178/329 (54%), Gaps = 18/329 (5%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 +SN +++A ++ G +A+PTETVYGL ++ + A+++++ K RP+ NPLI H+S Sbjct: 20 NSNEIKEAALWIKKGELVALPTETVYGLGANALSDEAVQKIFIAKGRPSDNPLIVHISRK 79 Query: 68 SMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + + S P S + L FWPGPLT++ ++ + TA L T R+P + Sbjct: 80 EQLLRLVSHIPDSANLLINAFWPGPLTIIFP--KGEEVSTVVTAGLDTVAVRMPSHPVAQ 137 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LIE P+A PSANRSG+ S T+ H+L + + +I ++DGG + G+EST+++ Sbjct: 138 ALIEAANVPIAAPSANRSGKPSPTSATHVL-ADLRGKIAGVVDGGPTAEGVESTVIDCTT 196 Query: 186 EKKVRILRPGGLEIETLKRAIS-VELE-YCVDETSTPQSPGMLKSHYAPRSQVRL----R 239 + + RPGG+ E L+ + + ++ + + P+SPGM +HYAP ++ L Sbjct: 197 TPPI-LYRPGGVTREQLEAVLGPIRIDPALLGKDEQPKSPGMKYTHYAPEGELTLVENQA 255 Query: 240 AIHV---NPREALIRFGNVPI---KNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293 AI RE + G + K +A + L++ L E A NL++ ++ D+ Sbjct: 256 AIQTFVDKWREKQFKVGIMATDEHKQDYDADVILSVGSRNDLAEVAHNLYHVLRQFDEQK 315 Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAAPR 322 I + P G+G+AI NRLE+AA R Sbjct: 316 VDVIIGETFPREGIGVAIMNRLEKAAGGR 344 >gi|315652210|ref|ZP_07905205.1| Sua5/YciO/YrdC/YwlC family protein [Eubacterium saburreum DSM 3986] gi|315485516|gb|EFU75903.1| Sua5/YciO/YrdC/YwlC family protein [Eubacterium saburreum DSM 3986] Length = 366 Score = 159 bits (403), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 114/338 (33%), Positives = 175/338 (51%), Gaps = 36/338 (10%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +R A + + +G +A PTETVYGL D+ A +++Y K RP+ NPLI H+S+I V Sbjct: 30 IRLAADIIKSGGLVAFPTETVYGLGADAFMEEAAKKIYVAKGRPSDNPLIVHISEIREVD 89 Query: 72 KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTAN-LKTACFRVP-CGFTKKLI 128 A P + LAK +WPGP+T+VL +I P +T+ L T R+P + +I Sbjct: 90 DIAECIPDIFYSLAKKYWPGPMTVVL---KKRNIVPDATSGGLDTVAVRLPDNNIARAII 146 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 + G P+A PSAN SG+ S T +H+L + +I +IIDGG IG+ESTI+++ + Sbjct: 147 KESGVPIAAPSANTSGRPSPTKARHVLED-MNGKIDMIIDGGTVGIGVESTIIDLTSDIP 205 Query: 189 VRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL----- 238 +LRPG + +E L+ I +E+ + P++PGM HYAP++ ++L Sbjct: 206 T-LLRPGAVTLEMLENTCKRVDIDPAIEHLLTGNEAPKAPGMKYKHYAPKADMKLVRGNE 264 Query: 239 --------RAIHVNPR--------EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNL 282 I + R E F V + ++SL SK + A+NL Sbjct: 265 SDVSKYLKGQIQNSDRLTAVLTVDEHKDMFDTVSSEKSNIKVLSLGSSKNPE--SIAYNL 322 Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 F+ ++ D+ G I S G+G AI NRL++AA Sbjct: 323 FDILRKCDELGVEYIFSESFDERGIGKAIMNRLKKAAG 360 >gi|293553330|ref|ZP_06673966.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1039] gi|291602554|gb|EFF32770.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1039] Length = 341 Score = 159 bits (403), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 111/332 (33%), Positives = 174/332 (52%), Gaps = 22/332 (6%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L++A E L G +A PTETVYGL ++ P A+++++ +K RP NPLI HV+ Sbjct: 7 DETELQEAAEALKEGELVAFPTETVYGLGANALLPNAVKKVFSVKGRPQDNPLIVHVASF 66 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 VK++ + P + + K FWPGPLTL+ + T + + T L TA FR+P T Sbjct: 67 EQVKEYVDNFHPAAEKIVKNFWPGPLTLIFKIKKDT-LPSVVTGGLSTAAFRMPDNKKTL 125 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 ++IE G PL PSAN SG+ S T H+ + +I IID G ++IG+EST++++ Sbjct: 126 EVIELSGVPLVGPSANTSGKPSPTTADHVY-HDLQGKITGIIDDGATRIGVESTVLDLSD 184 Query: 186 EKKV-RILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRL--- 238 + ILRPG + E ++ I + ++ V E TP++PGM HY+P ++V + Sbjct: 185 PTAMPMILRPGAVTKEQIEAVIESPVAIDQHLVKENETPKAPGMKYKHYSPDTRVLMVRD 244 Query: 239 ----RAIHVNPREALIRFGNVPIKNIENAI----ISLNLSKTGKLKEAAFNLFNYMKIAD 290 A+ + IR G + I + + ++ + ++ AA LF ++ D Sbjct: 245 GDWSTAVQW-AKNKKIRAGVIASPEIADQVRTDTAAVYMYNDNSVEAAAKGLFAGLRGLD 303 Query: 291 DS--GASSIAFSSIPNHGLGIAINNRLERAAA 320 + G I P GLG A NRL++AA Sbjct: 304 EPTLGLDLIFVQVYPETGLGNAYMNRLKKAAG 335 >gi|229164273|ref|ZP_04292206.1| hypothetical protein bcere0009_50340 [Bacillus cereus R309803] gi|228619213|gb|EEK76106.1| hypothetical protein bcere0009_50340 [Bacillus cereus R309803] Length = 347 Score = 159 bits (403), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 114/325 (35%), Positives = 171/325 (52%), Gaps = 21/325 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A + L IA PTETVYGL ++ N AI +++E K RP+ NPLI H+ S + Sbjct: 21 IQEAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLD 80 Query: 72 KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P++ L + FWPGPLT++L I TA L T R+P LIE Sbjct: 81 GIVKEIPPVAEKLMEHFWPGPLTIILP--RKEGISEKVTAGLNTVGIRMPDHPVALALIE 138 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+A PSANRSG+ S T H+ + ++I I+DGG + +G+EST+++ C V Sbjct: 139 EANVPVAAPSANRSGRPSPTLASHVY-EDLNEKIAGIVDGGATGVGVESTVID--CTSTV 195 Query: 190 -RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPR--------SQVRL 238 ILRPGG+ E L+ I +V L+ + DE P+SPGM +HYAP+ S+ + Sbjct: 196 PTILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255 Query: 239 RAIHVNPREALIRFG---NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 + I +E + G +++ +A + L+ L A L++ ++ D S Sbjct: 256 QLIVDKKKEEGFKVGVLTTEEYQHVYSADVVLSCGVRSDLASVATKLYDVLRTFDASEVD 315 Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320 I S PN G+G AI NRL +AA Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAG 340 >gi|294617197|ref|ZP_06696849.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1679] gi|291596542|gb|EFF27783.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1679] Length = 341 Score = 159 bits (403), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 111/332 (33%), Positives = 174/332 (52%), Gaps = 22/332 (6%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L++A E L AG +A PTETVYGL ++ P ++++++ +K RP NPLI HV+ Sbjct: 7 DETELQEAAEALKAGELVAFPTETVYGLGANALLPNSVKKVFSVKGRPQDNPLIVHVASF 66 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 VK++ + P + + K FWPGPLTL+ + T + + T L TA FR+P T Sbjct: 67 EQVKEYVDNFHPAAEKIVKNFWPGPLTLIFKIKKDT-LPSVVTGGLSTAAFRMPDNKKTL 125 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 ++IE G PL PSAN SG+ S T H+ + +I IID G ++IG+EST++++ Sbjct: 126 EVIELSGVPLVGPSANTSGKPSPTTADHVY-HDLQGKITGIIDDGATRIGVESTVLDLSD 184 Query: 186 EKKV-RILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRL--- 238 ILRPG + E ++ I + ++ V E TP++PGM HY+P ++V + Sbjct: 185 PAVAPMILRPGAVTKEQIEAVIESPVAIDQHLVKENETPKAPGMKYKHYSPDTRVLMVRD 244 Query: 239 ----RAIHVNPREALIRFGNVPIKNIENAI----ISLNLSKTGKLKEAAFNLFNYMKIAD 290 A+ + IR G + I + + ++ + ++ AA LF ++ D Sbjct: 245 GDWSTAVQWT-KNKKIRAGVIASPEIADQVRTDTAAVYMYNDNSVEAAAKGLFAGLRGLD 303 Query: 291 DS--GASSIAFSSIPNHGLGIAINNRLERAAA 320 + G I P GLG A NRL++AA Sbjct: 304 EPTLGLDLIFVQVYPETGLGNAYMNRLKKAAG 335 >gi|150401886|ref|YP_001325652.1| Sua5/YciO/YrdC/YwlC family protein [Methanococcus aeolicus Nankai-3] gi|150014589|gb|ABR57040.1| Sua5/YciO/YrdC/YwlC family protein [Methanococcus aeolicus Nankai-3] Length = 341 Score = 159 bits (402), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 114/342 (33%), Positives = 178/342 (52%), Gaps = 31/342 (9%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 + I + N + A + G +A PTETVYGL D+ NP A+ +++++K RP NPLI H Sbjct: 3 LKILNKNEIEIAANAIKDGDLVAFPTETVYGLGADALNPDAVEKIFKVKGRPIDNPLIIH 62 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCG 122 V+++ M K A + + L + F PGPLT++ L ++ P ++ ANL T R+P Sbjct: 63 VNNLEMANKIAHITENAKILLQKFSPGPLTII---LKKKEVVPAITCANLDTVAVRIPNN 119 Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 +LIE P+A PSAN SG+ S TN++HI+ + +I I+G + IG+EST++ Sbjct: 120 KIALELIEKANTPIAAPSANLSGKPSPTNIQHII-DDLGDKINYAIEGETT-IGVESTVL 177 Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDE----TSTPQSPGMLKSHYAPRSQV- 236 ++ EKK +ILR G + E LK+ I +EL + T +SPGM +HY+P + + Sbjct: 178 DL-TEKKPKILRYGSITYEDLKKVIDIELIEINKQGKKIIKTVKSPGMKYTHYSPDAPLI 236 Query: 237 ----RLRAIHVNPREALIRFGNVPIKNIENAII--------------SLNLSKTGKLKEA 278 + I + + + KN II + L LK Sbjct: 237 MATGNIEEITGKINDLIKEYTEKGEKNENVGIIITEETKDKYPANIKKIVLGSRSDLKTI 296 Query: 279 AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + NLFN ++ D +G S I GLG+AI +RLE+A++ Sbjct: 297 SKNLFNSLREMDKNGVSIIFIEGFEKKGLGLAIMDRLEKASS 338 >gi|293378552|ref|ZP_06624715.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium PC4.1] gi|292642881|gb|EFF61028.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium PC4.1] Length = 341 Score = 159 bits (402), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 110/332 (33%), Positives = 174/332 (52%), Gaps = 22/332 (6%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L++A + L AG +A PTETVYGL ++ P +++++ +K RP NPLI HV+ Sbjct: 7 DETELKEAAKALKAGELVAFPTETVYGLGANALLPNTVKKVFSVKGRPQDNPLIVHVASF 66 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 VK++ + P + + K FWPGPLTL+ + T + + T L TA FR+P T Sbjct: 67 EQVKEYVDNFHPETEKIVKNFWPGPLTLIFKIKKDT-LPSVVTGGLSTAAFRMPDNKKTL 125 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 ++IE G PL PSAN SG+ S T H+ + +I IID G ++IG+EST++++ Sbjct: 126 EVIELSGVPLVGPSANTSGKPSPTTADHVF-HDLQGKITGIIDDGATRIGVESTVLDLSD 184 Query: 186 EKKV-RILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRL--- 238 + ILRPG + E ++ I + ++ V E TP++PGM HY+P ++V + Sbjct: 185 PTAMPMILRPGAVTKEQIEAVIESPVAIDQHLVKENETPKAPGMKYKHYSPDTRVLMVRE 244 Query: 239 ----RAIHVNPREALIRFGNVPIKNIENAI----ISLNLSKTGKLKEAAFNLFNYMKIAD 290 A+ + IR G + I + + ++ + ++ AA LF ++ D Sbjct: 245 GDWSTAVQW-AKNKKIRVGVIASPEISDQVRTDTAAVYMYNDNSVEAAAKGLFAGLRGLD 303 Query: 291 DS--GASSIAFSSIPNHGLGIAINNRLERAAA 320 + G I P GLG A NRL++AA Sbjct: 304 EPTLGLDLIFVQVYPETGLGNAYMNRLKKAAG 335 >gi|323339963|ref|ZP_08080230.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus ruminis ATCC 25644] gi|323092605|gb|EFZ35210.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus ruminis ATCC 25644] Length = 339 Score = 159 bits (402), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 116/339 (34%), Positives = 181/339 (53%), Gaps = 26/339 (7%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I I ++ + KA L G IA PTETVYGL D+ N A++R+Y K RP+ NPL Sbjct: 1 MLITKIYTTDEIEKAANELRLGELIAFPTETVYGLGADATNEQAVKRVYLAKGRPSDNPL 60 Query: 61 ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I VS MV+++ S+ ++ L FWPGPLT++L + + T L+TA FR+ Sbjct: 61 IVTVSSRKMVEEYVESLPERAVKLMDAFWPGPLTMILKIKEGA-LSKAVTGGLETAAFRM 119 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T KLIE+ G P+ PSAN SG+ S T +H+ + I I+D G +++G+ES Sbjct: 120 PQNKATLKLIESAGVPIVGPSANSSGKPSPTTAQHVY-HDLEGRIAGILDDGPTQVGVES 178 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQ 235 TI+++ E V ILRPG + +E L+ + + ++ V P++PGM HYAP +Q Sbjct: 179 TIIDLSSEHPV-ILRPGAVTVEQLEEVLKETVLSDKHKVGMKEVPKAPGMKYKHYAPDAQ 237 Query: 236 VRL-------RAI----HVNPREALIRFGNVPIKNIENAII--SLNLSKTGKLKEAAFNL 282 V + +A+ + R ++ F V ++NA + L+ S + +A+ L Sbjct: 238 VLIVKAGDWDKALLWRKNKQERVGVMAFNEV----LKNADLPKKLSYSLGDTVFDASRRL 293 Query: 283 FNYMKIAD-DSGASSIAFSSIPNHGLGIAINNRLERAAA 320 F ++ D + I + + GLG A NRL+++A Sbjct: 294 FAGLRYFDSEEKVDFILCAGVKEAGLGEAYMNRLKKSAG 332 >gi|116493076|ref|YP_804811.1| translation factor SUA5 [Pediococcus pentosaceus ATCC 25745] gi|116103226|gb|ABJ68369.1| translation factor SUA5 [Pediococcus pentosaceus ATCC 25745] Length = 340 Score = 159 bits (402), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 109/331 (32%), Positives = 173/331 (52%), Gaps = 24/331 (7%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S+ ++ A + + AG ++ PTETVYGL D+ NP A++++Y K RP+ NPLI HV+D + Sbjct: 7 SDEIQVAAQAIKAGELVSFPTETVYGLGADATNPEAVKKVYAAKGRPSDNPLIVHVADQT 66 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 V K A++D S L FWPGPLT++L + ++ + T L TA FR P T L Sbjct: 67 EVAKFANIDDKSKKLMDQFWPGPLTIILPIKKGA-LNSIVTGGLDTAAFRNPATQVTIDL 125 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I G PL PSAN SG+ S T +H+L + +I ++D G + IG+EST++++ Sbjct: 126 IRAAGVPLVGPSANTSGKPSPTKPEHVL-HDLDGKIAGVLDDGETTIGVESTVLDMSSTT 184 Query: 188 KVRILRPGGLEIETLKRAIS-VELEYC-VDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245 ILRPG + + L I V+ ++ V + P++PGM HYAP +QV + + Sbjct: 185 P-SILRPGAITEQALAPLIGEVQTDHHKVGKDEVPKAPGMKYKHYAPNAQVYI--VSDQD 241 Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKE---------------AAFNLFNYMKIAD 290 + ++ + + + + +T KL E A+ LF+ ++ D Sbjct: 242 WDGVVAWLQKHTDQTIGIMATNEIFETKKLGEFDQVRYISLGVDSKTASRELFDGLRTFD 301 Query: 291 -DSGASSIAFSSIPNHGLGIAINNRLERAAA 320 DS +I G+G A NRL+++A Sbjct: 302 ADSAIKTIFAQGFDRIGIGEAYMNRLQKSAG 332 >gi|78044541|ref|YP_361354.1| Sua5/YciO/YrdC/YwlC family protein [Carboxydothermus hydrogenoformans Z-2901] gi|77996656|gb|ABB15555.1| Sua5/YciO/YrdC/YwlC family protein [Carboxydothermus hydrogenoformans Z-2901] Length = 342 Score = 159 bits (402), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 115/343 (33%), Positives = 172/343 (50%), Gaps = 39/343 (11%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS-- 65 + + +A E++ G +A PTETVYGL D+ NP A+ +++ K RP NPLI H++ Sbjct: 14 EQTIINEAAEYIKKGELVAFPTETVYGLGADAFNPAAVLKIFAAKGRPQDNPLIVHIARH 73 Query: 66 -DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 DI V A VD + L + FWPGPLT+VL D+ + +A L T R+P Sbjct: 74 EDIYRVA--ARVDVRAQKLMEKFWPGPLTIVLP--RREDLPAVVSAGLPTVAVRLPDHPV 129 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 LIE P+A PSANRSG+ S T+ +H+L + IP+++ GG ++G+EST++++ Sbjct: 130 AVMLIEAAQTPIAAPSANRSGRPSPTSYEHVL-DDLSGIIPVVLAGGNCRVGVESTVLDL 188 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 V +LRPGG+ E L+ I + + P++PGM HYAPR+ V L Sbjct: 189 TVTPPV-VLRPGGITPEMLEEVIGEVRYFNAKDLDAPKAPGMKYPHYAPRAPVYLVK--- 244 Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAF---------------------NL 282 P E L R + + A ++ L + + KE F NL Sbjct: 245 TPEEILKR-----ARELGAAGKNVGLLISKETKEQFFPNYSQNLLVLGSRNNPSELLHNL 299 Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325 + ++ D I P GL +A+ NRL++AAA R S Sbjct: 300 YEKLREFDRRDVELILAEVYPEEGLYLALMNRLKKAAAGRYLS 342 >gi|71394063|gb|AAZ32102.1| putative translation factor [uncultured euryarchaeote Alv-FOS5] Length = 342 Score = 159 bits (402), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 111/315 (35%), Positives = 168/315 (53%), Gaps = 28/315 (8%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL-SLHL 83 +A PTETVYGL D+ N A++R++E K RP NPLI H++ + A P + L Sbjct: 32 VAFPTETVYGLGADALNAEAVKRIFEAKGRPQDNPLIVHIAHEEGIYNLAREVPRKAKDL 91 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142 FWPGPLTL+L + I +TA L T R+P +KLI P+A PSAN Sbjct: 92 IDRFWPGPLTLILK--KSPIIPDRTTAGLDTVAIRMPSHPIARKLILLSERPIAAPSANT 149 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202 SG+ S T KH++ K + IIDGG + +GLEST++++ + + +LRPGG+ + L Sbjct: 150 SGKPSPTTGKHVIDDLYGK-VEYIIDGGPTNVGLESTVIDLTTDPPM-LLRPGGVTLGQL 207 Query: 203 KRAIS-VELEYCVDE---TSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALI-------- 250 + + V++ V T P+SPGM HYAP +++ L PR+ ++ Sbjct: 208 EEVLGKVDVHPAVFGKRITGNPRSPGMKYRHYAPDARLILVE---GPRDKVVKRINEMLG 264 Query: 251 -----RFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305 + G + + N I +NL K+ +E A +F+ ++ D GA I IP+ Sbjct: 265 SLGTNKIGVLAVYGEYNQGIVVNLGKS--TEEVARKVFDALRDLDRRGADIIIAEGIPDT 322 Query: 306 GLGIAINNRLERAAA 320 LG+A+ NRL +AA+ Sbjct: 323 ELGLAVMNRLRKAAS 337 >gi|312880381|ref|ZP_07740181.1| translation factor SUA5 [Aminomonas paucivorans DSM 12260] gi|310783672|gb|EFQ24070.1| translation factor SUA5 [Aminomonas paucivorans DSM 12260] Length = 338 Score = 159 bits (402), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 118/338 (34%), Positives = 170/338 (50%), Gaps = 17/338 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 + + + S L +A L G +A PTETVYGL D+ NP A+ ++ K RP NPL Sbjct: 6 LAVTPSSRSRHLEEAVRVLLGGGLVAFPTETVYGLGADATNPRAVGGIFAAKGRPGDNPL 65 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 I HV+ + + + D + LA FWPGPLTLV++ + I A L T R+P Sbjct: 66 IVHVASLEEAQALGAFDDRARALAARFWPGPLTLVVE--ADPRIPEEVRAGLPTVAIRMP 123 Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + LI G P+A PSANRSG+ S T+ + + IPLI+DGG +++G+EST Sbjct: 124 RHPLAQDLIRLAGVPVAAPSANRSGRPSPTDAASV-REDLDGRIPLILDGGPAEVGVEST 182 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 +V+V EK V +LRPGG+ E L+R + L Y E +SPG HYAP + L Sbjct: 183 VVDVTGEKVV-LLRPGGISSEDLER-VCGPLGYPQGEDLLRRSPGTRHRHYAPGVPLWLW 240 Query: 240 AIHVNPRE-ALIRFGNVPIKNIENAIISLNLS---KTGKLKEAAFNLFNYMKIADDSGAS 295 P E ++ VP + N + + G +E A LF ++ + GA Sbjct: 241 DGGDVPEEIRILEREGVPWGYVGVLPPPANPAWELRGGTFEEYAALLFRALRRLEQQGAR 300 Query: 296 SIAFSSIPNHGLGI--AINNRLERAAAPR----NQSQR 327 I + P GI A+ +RL RA+ R N+ +R Sbjct: 301 GI-LAEWPRGKAGIARALRDRLSRASGGREPLVNEPER 337 >gi|261208265|ref|ZP_05922938.1| sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TC 6] gi|289565645|ref|ZP_06446091.1| translation factor SUA5 [Enterococcus faecium D344SRF] gi|294615327|ref|ZP_06695202.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1636] gi|260077522|gb|EEW65240.1| sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TC 6] gi|289162613|gb|EFD10467.1| translation factor SUA5 [Enterococcus faecium D344SRF] gi|291591830|gb|EFF23464.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1636] Length = 341 Score = 159 bits (401), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 111/332 (33%), Positives = 174/332 (52%), Gaps = 22/332 (6%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L++A E L AG +A PTETVYGL ++ P ++++++ +K RP NPLI HV+ Sbjct: 7 DETELQEAAEALKAGELVAFPTETVYGLGANALLPNSVKKVFSVKGRPQDNPLIVHVASF 66 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 VK++ + P + + K FWPGPLTL+ + T + + T L TA FR+P T Sbjct: 67 EQVKEYVDNFHPAAEKIVKNFWPGPLTLIFKIKKDT-LPSVVTGGLSTAAFRMPDNKKTL 125 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 ++IE G PL PSAN SG+ S T H+ + +I IID G ++IG+EST++++ Sbjct: 126 EVIELSGVPLVGPSANTSGKPSPTTADHVY-HDLQGKITGIIDDGATRIGVESTVLDLSD 184 Query: 186 EKKV-RILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRL--- 238 ILRPG + E ++ I + ++ V E TP++PGM HY+P ++V + Sbjct: 185 PAVAPMILRPGAVTKEQIEAVIESPVAIDQHLVKENETPKAPGMKYKHYSPDTRVLMVRD 244 Query: 239 ----RAIHVNPREALIRFGNVPIKNIENAI----ISLNLSKTGKLKEAAFNLFNYMKIAD 290 A+ + IR G + I + + ++ + ++ AA LF ++ D Sbjct: 245 GDWSTAVQW-AKNKKIRAGVIASPEIADQVRTDTAAVYMYNDNSVEAAAKGLFAGLRGLD 303 Query: 291 DS--GASSIAFSSIPNHGLGIAINNRLERAAA 320 + G I P GLG A NRL++AA Sbjct: 304 EPTLGLDLIFVQVYPETGLGNAYMNRLKKAAG 335 >gi|332687007|ref|YP_004456781.1| YrdC/Sua5 family protein [Melissococcus plutonius ATCC 35311] gi|332371016|dbj|BAK21972.1| YrdC/Sua5 family protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA [Melissococcus plutonius ATCC 35311] Length = 344 Score = 159 bits (401), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 110/326 (33%), Positives = 175/326 (53%), Gaps = 24/326 (7%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A +F+ G IA PTETVYGL ++ + A++ +YE K RP+ NPLI HV + +KK+ Sbjct: 15 AAKFVKQGELIAFPTETVYGLGANALDEIAVKEVYEAKGRPSDNPLIIHVETVEQIKKYV 74 Query: 75 SVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132 S P ++ LAK FWPGPLT++ ++ T + T L TA FR+P T +LI G Sbjct: 75 SNFPFIAEKLAKHFWPGPLTMIFNIKPGT-FPEVVTGGLTTAAFRIPNNRLTLELIHQAG 133 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192 PL PSAN SG+ S T +H+ + +I ++DGG ++IG+EST++++ E IL Sbjct: 134 VPLVGPSANTSGKPSPTIAEHVY-HDLQGKIAGVLDGGATQIGIESTVLDLTTEVPT-IL 191 Query: 193 RPGGLEIETLK---RAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL--------RAI 241 RPG + + LK ++V+ ++ ++E P++PGM HY+P + V + +AI Sbjct: 192 RPGLITKQELKVIIGKVAVD-QHLLNEKEQPKAPGMKYKHYSPDTAVWIISMPADWEKAI 250 Query: 242 HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKE-----AAFNLFNYMKIADDSGASS 296 H+ +E ++ G + I + S ++ T E AA LF ++ D Sbjct: 251 HL-AKERRLKIGLFADEKIVDTYRS-QITATFSFGEDTAINAAKYLFAGLRELDQMAVDV 308 Query: 297 IAFSSIPNHGLGIAINNRLERAAAPR 322 I + +A NRL++AA + Sbjct: 309 IFAQGFAERSMALAYMNRLKKAAGQK 334 >gi|331092053|ref|ZP_08340884.1| hypothetical protein HMPREF9477_01527 [Lachnospiraceae bacterium 2_1_46FAA] gi|330402254|gb|EGG81825.1| hypothetical protein HMPREF9477_01527 [Lachnospiraceae bacterium 2_1_46FAA] Length = 534 Score = 159 bits (401), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 118/359 (32%), Positives = 178/359 (49%), Gaps = 60/359 (16%) Query: 3 IMSITDSNALRK-----ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 I++ D N + K A + + G +A PTETVYGL ++ + A ++ YE K RP+ Sbjct: 32 IITKVDKNQIEKEVIEQAGKIIQEGGLVAFPTETVYGLGANALDEEAAKKTYEAKGRPSD 91 Query: 58 NPLICHVSDISMVKK-HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTA 115 NPLI H++DIS + K ++ ++ LA++FWPGPLT++ + +DI P +T L T Sbjct: 92 NPLIIHIADISHLNKIVQNISKKAMDLAEVFWPGPLTMIFE---KSDIVPYGTTGGLDTV 148 Query: 116 CFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174 R+P ++LI G ++ PSAN SG+ S T KH+ + I +I+DGG I Sbjct: 149 AVRMPDDIIARELILEGGGYISAPSANTSGRPSPTTAKHV-EEDMSGRIDMILDGGSVDI 207 Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAI---SVELEYCVDETS-TPQSPGMLKSHY 230 G+ESTIV++ E + ILRPG + L+ I V+ +ETS P++PGM HY Sbjct: 208 GVESTIVDMTAEPPM-ILRPGAVTQRMLEEVIGEVQVDKTLLGEETSEAPKAPGMKYRHY 266 Query: 231 APRSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEA------------ 278 AP++Q+++ +K+ +AI L KT K K+ Sbjct: 267 APKAQLKIV--------------QGTLKDEVHAIKQLAYEKTKKGKKVGIIASTETAPQY 312 Query: 279 -----------------AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 A NL+ ++ DD I S G+G AI NRLE+AA Sbjct: 313 TAGLIKPIGTRENQSSIAKNLYKVLREFDDENVDCIYSESFSVDGIGSAIMNRLEKAAG 371 >gi|225867306|ref|YP_002752684.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus 03BB102] gi|229187551|ref|ZP_04314691.1| hypothetical protein bcere0004_50840 [Bacillus cereus BGSC 6E1] gi|225785999|gb|ACO26216.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus 03BB102] gi|228595918|gb|EEK53598.1| hypothetical protein bcere0004_50840 [Bacillus cereus BGSC 6E1] Length = 346 Score = 159 bits (401), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 115/325 (35%), Positives = 172/325 (52%), Gaps = 21/325 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++A + L IA PTETVYGL ++ N AI +++E K RP+ NPLI H+ S + Sbjct: 21 LQEAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLD 80 Query: 72 KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P++ L + FWPGPLT++L I TA L T R+P LIE Sbjct: 81 GIVKEIPPVAEKLMEHFWPGPLTIILP--RKEGISEKVTAGLHTVGVRMPDHPVALALIE 138 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+A PSANRSG+ S T H+ + ++I I+DGG + +G+EST+++ C V Sbjct: 139 EANVPVAAPSANRSGRPSPTLASHVY-EDLNEKIAGIVDGGATGVGVESTVID--CTSAV 195 Query: 190 -RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPR--------SQVRL 238 ILRPGG+ E L+ I +V L+ + DE P+SPGM +HYAP+ S+ + Sbjct: 196 PTILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVKGSREFI 255 Query: 239 RAIHVNPREALIRFGNVPIK---NIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 + + +E + G + + +I NA + L+ L A L++ ++ D S Sbjct: 256 QRLVDEKKEEGFKVGVLTTEEYHHIYNADVVLSCGVRSDLASVATKLYDVLRTFDASEVD 315 Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320 I S P+ G+G AI NRL +AA Sbjct: 316 VIFSESFPSEGIGNAIMNRLTKAAG 340 >gi|261414826|ref|YP_003248509.1| Sua5/YciO/YrdC/YwlC family protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371282|gb|ACX74027.1| Sua5/YciO/YrdC/YwlC family protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|302328197|gb|ADL27398.1| Sua5/YciO/YrdC/YwlC family/SUA5 domain protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 331 Score = 159 bits (401), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 113/334 (33%), Positives = 174/334 (52%), Gaps = 31/334 (9%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 +M ++ +A L G +AIPTETVYGLA ++ P A+ +++ K+RP +PL Sbjct: 10 FWVMKFPPWTSVSEAARLLKEGEVVAIPTETVYGLAGNAFEPKALAKIFAAKERPTFDPL 69 Query: 61 ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFR 118 I H++DI+ + A P S + LA+ +WPGP+T++ L D P L T+ L + R Sbjct: 70 IVHIADIAQLTDIAKDIPDSAYRLAEAYWPGPMTII---LPKKDCIPDLCTSALPSVAVR 126 Query: 119 VPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 P + +I+ G PLA PSAN +S T +H+ ++ + I I+DGG +G+E Sbjct: 127 FPSHPIAQAIIKESGLPLAAPSANLFKHVSPTTAEHV-AAQLADRIAGIVDGGPCSVGVE 185 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCVDETSTPQ-SPGMLKSHYAPRSQ 235 S+I+++ E V +RPG + E K + V+++ + P +PG +HY R Q Sbjct: 186 SSIISLVGEPTV--MRPGAITPEMFKAILGEVKIKESTSKPGQPMLAPGQCDTHY--RPQ 241 Query: 236 VRLRAIHVNPREAL------IRFGN----VPIKNIENAIISLNLSKTGKLKEAAFNLFNY 285 V L V AL I FG VP ++NLS TG + EA L+ + Sbjct: 242 VPLYYGEVPAGYALPEHTVRIAFGTQQGPVP--------ATVNLSATGDMVEATSKLYAF 293 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 M DD I IPN G+G+A+N+RL+RA+ Sbjct: 294 MHDLDDPKFDLILVDPIPNTGVGMALNDRLKRAS 327 >gi|294940148|ref|XP_002782688.1| sua5, putative [Perkinsus marinus ATCC 50983] gi|239894568|gb|EER14483.1| sua5, putative [Perkinsus marinus ATCC 50983] Length = 356 Score = 159 bits (401), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 113/337 (33%), Positives = 173/337 (51%), Gaps = 29/337 (8%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 + + L +A E L G +A PTETVYGL ++ + A+ +Y+ K RP+ NPLI H + Sbjct: 22 EKHKLIRAGELLREGELVAFPTETVYGLGANALSDEAVAGIYQAKGRPSDNPLIVHTTCA 81 Query: 68 SMVKKHASV--DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 + + + DP+++ LAK FWPGPLT+VL + S + I TA L T RVP Sbjct: 82 ADALRLSQTPEDPIAVKLAKTFWPGPLTMVLPVGSNSGIAKRVTAGLDTVGLRVPSHPVA 141 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHIL------SSSICKEIPLIIDGGISKIGLES 178 +IE G P+A PSAN SG+ S T H+ + + KE+ +I+DGG G+ES Sbjct: 142 HAVIEAAGVPIAAPSANTSGKPSPTEAFHVYEDMEHNADAGRKEVSMIVDGGACDHGVES 201 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAIS----VELEYCVDETSTPQSPGMLKSHYAPRS 234 T+V + V ILRPG + +E L+ + V++ + P++PGM HYAP++ Sbjct: 202 TVVRIMDSSHVVILRPGAVTLEQLRACLEGMAVVDIPKPLAGAECPRAPGMKYRHYAPQA 261 Query: 235 QVRL---------RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNY 285 V L A P +I F ++ N+ A + +L L A +F+ Sbjct: 262 MVDLVYDKDEILREAALSEPHTVVIAFDDL---NLNGARVR-SLGPRSDLSVACHRIFSL 317 Query: 286 MKIADDS-GASSIAFSSIPNH--GLGIAINNRLERAA 319 + DDS A I + + G+G A+ NR+E+A+ Sbjct: 318 FRECDDSLHAKRIVLDARFDQTTGIGRALFNRIEKAS 354 >gi|309390218|gb|ADO78098.1| Sua5/YciO/YrdC/YwlC family protein [Halanaerobium praevalens DSM 2228] Length = 377 Score = 158 bits (400), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 112/336 (33%), Positives = 176/336 (52%), Gaps = 29/336 (8%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK- 72 KA E L +A+PTETVYGLA ++ +P A+ +++ K RP NPLI H++D + +K+ Sbjct: 42 KAAELLSQNQLVALPTETVYGLAANALSPKAVSKIFAAKGRPQDNPLIVHIADQAQLKEL 101 Query: 73 -HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 A + + L FWPGPLT++ + + L++A L+T R+P +IE+ Sbjct: 102 TAAKITAKTQALMDHFWPGPLTIIFP--KSKKVPNLTSAGLETIAIRMPAHPLILAVIES 159 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G PLA PSAN SG S T +H+ + +IPLI+DGG ++G+EST+V+++ +V+ Sbjct: 160 SGLPLAAPSANTSGFPSPTQAEHVY-HDLKGKIPLILDGGPCQVGVESTVVDLRSA-QVK 217 Query: 191 ILRPGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREAL 249 +LRPGG+ + + + E+ D + T +PGM HYAP +L + + + Sbjct: 218 VLRPGGISRQEIADFLGEEVLLAADLKDDTAVAPGMKYRHYAPNK--KLYTFNFEDKLFI 275 Query: 250 IRFGNVPIKNIENAIISLNLSK-------TGKLK-----------EAAFNLFNYMKIAD- 290 ++ ++ + AIIS SK T LK E A LF M+ D Sbjct: 276 LKKALKKAESKKIAIISARNSKLDNYQLPTKNLKVLKVFSHQKPAELAQKLFALMRSLDA 335 Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326 D I + G+G A+ NR+++AAA SQ Sbjct: 336 DPEVEEIYIEELAAQGIGEAVMNRIQKAAAAEEYSQ 371 >gi|291543207|emb|CBL16316.1| translation factor SUA5 [Ruminococcus sp. 18P13] Length = 341 Score = 158 bits (400), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 114/330 (34%), Positives = 167/330 (50%), Gaps = 24/330 (7%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L+KA + G + +PTETVYGLA D+ N A+ +++ K RP NPLI H+S + Sbjct: 9 DEAGLQKAAGLIREGQVVGMPTETVYGLAADATNRDAVAKVFAAKGRPMDNPLIVHISSM 68 Query: 68 SMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA-NLKTACFRVPCG-FT 124 +++ S P L LA FWPGPLT++ + +++ P+ T+ L T R+P Sbjct: 69 EELEQAVSRVPELVASLADAFWPGPLTMI---MPKSELIPMETSGGLDTVGVRMPSHPVA 125 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + LI G P+A PSANRSG S T +H+L + + IP I+DGG GLEST+V Sbjct: 126 QALIRIAGVPIAAPSANRSGYPSPTTAQHVL-ADMQGRIPAILDGGACSCGLESTVVAFD 184 Query: 185 CEKKVRILRPGGLEIETLKR-----AISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 ++ VRILRPG + E L I + V + SPGM HYAP + V L Sbjct: 185 DDRTVRILRPGFVTKEMLLEHVPNVVIDPAIFRQVSASEKVASPGMKYKHYAPNAAVTL- 243 Query: 240 AIHVNPREALIRFGNVPIKNIENAII---------SLNLSKTGKLKEAAFNLFNYMKIAD 290 + +P E +F + + A+I +++ G E LF ++ D Sbjct: 244 -VEGSP-ELFRQFLALQQADGVYALIFDGDAEQFPYPHMTYGGTSIEQGRQLFARLRELD 301 Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAA 320 GA ++ G+G+A+ NRL RAA Sbjct: 302 QIGAKTVYVRMPQKDGVGLAVYNRLIRAAG 331 >gi|297585438|ref|YP_003701218.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus selenitireducens MLS10] gi|297143895|gb|ADI00653.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus selenitireducens MLS10] Length = 352 Score = 158 bits (400), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 113/325 (34%), Positives = 163/325 (50%), Gaps = 19/325 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 A+ +A E + G +A PTETVYGL D+ + AIRR++E K RPA NPLI HV+ I Sbjct: 26 AIAEAAELIRNGEVVAFPTETVYGLGGDATSDEAIRRIFEAKGRPADNPLIVHVASIEDA 85 Query: 71 KKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + P + L FWPGPLT+VL T + TA L T R+P +LI Sbjct: 86 ARWTLTLPKTAKDLMAAFWPGPLTIVLPHNGT--LSGAVTAGLPTVGLRMPDHPVALRLI 143 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E G PLA PS NRSG+ S T H+ + IP+I+DGG + +GLEST+V V + + Sbjct: 144 EASGRPLAAPSGNRSGRPSPTEAAHV-EEDLNGRIPMILDGGPAGVGLESTVVEV-TDGQ 201 Query: 189 VRILRPGGLEIETLKR-AISVELE-YCVDETSTPQSPGMLKSHYAPRSQVRL-------- 238 V +LRPGG+ +E L+ A V ++ + P+SPGM +HYAP + L Sbjct: 202 VTVLRPGGVTLEALREVAEHVAIDPSLLKSDEAPRSPGMKYTHYAPDVPLYLVEGELAAL 261 Query: 239 -RAIHVNPREALIRFGNV--PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 +AI + L+ + + A +++ L L+ ++ Sbjct: 262 KQAIRKAKEDGLLTGAIIVNEWAGLTGAHQEVSVGSETDLAAVGRELYRALRQFKTGEVD 321 Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320 + + P LG AI NRLE+A+ Sbjct: 322 MLLVCTFPETELGGAIMNRLEKASG 346 >gi|182420265|ref|ZP_02951494.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium butyricum 5521] gi|237666937|ref|ZP_04526922.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182375860|gb|EDT73452.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium butyricum 5521] gi|237658136|gb|EEP55691.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 349 Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 111/333 (33%), Positives = 174/333 (52%), Gaps = 31/333 (9%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + + G +A PTETVYGL D+ N A+++++ K RP NPLI HV+ ++ Sbjct: 18 IEEAAKIIKEGGIVAFPTETVYGLGADALNEDAVKKIFVAKGRPQDNPLIIHVASKNIEH 77 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCG-FTKKLIE 129 + ++ L FWPGPLT++ L DI P +++A+L + R+P +KLIE Sbjct: 78 YVDEIPEIAKELMDKFWPGPLTII---LKKNDIIPNITSASLDSIGVRMPDNEIARKLIE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G +A PSAN SG+ S T+++ + + + II G SKIG+ESTIV+ + + Sbjct: 135 LSGTTIAAPSANISGRPSPTDIERCV-EDLDGRVDYIIGGCHSKIGVESTIVDCTVDPPL 193 Query: 190 RILRPGGLEIETLKRAIS-VELEYCV----DETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244 +LRPGG+ +E LK S +E++ + E P++PGM HYAP+++V + I N Sbjct: 194 -VLRPGGITLEMLKEIDSRIEIDKAIMQKPSENLKPKAPGMKYRHYAPKAKVTI--ISGN 250 Query: 245 PREALIRFGNVPIKNIENAI-----------------ISLNLSKTGKLKEAAFNLFNYMK 287 ++ + + + NIE I + L L A NLF ++ Sbjct: 251 RKKTVAKIKEMVNYNIEKQKKVCILTVEENEKEYQQGIKITLGSLSDLTTVAKNLFEALR 310 Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 DD GA I + G+G+AI NRL +AA Sbjct: 311 KCDDLGADLILAEAYEEKGVGVAIMNRLNKAAG 343 >gi|331701220|ref|YP_004398179.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus buchneri NRRL B-30929] gi|329128563|gb|AEB73116.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus buchneri NRRL B-30929] Length = 340 Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 116/332 (34%), Positives = 172/332 (51%), Gaps = 32/332 (9%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +A +F+ G +A PTETVYGL D+ N TA++++Y K RP+ NPLI VSDI+MV+ Sbjct: 11 LDQAADFIRQGELVAFPTETVYGLGADATNETAVKKVYAAKGRPSDNPLIVTVSDIAMVE 70 Query: 72 KHASVDPLSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-KL 127 K+ P S L FWPG LT++ L + T L TA FR P T L Sbjct: 71 KYTQ--PFSDDAKALMAKFWPGSLTMIFKLKPNA-LSKSVTGGLDTAAFRFPKNQTTLDL 127 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I G P+ PSAN SG+ S T +H+ + +I I+D G + +G+ESTI+++ Sbjct: 128 ISKAGVPIVGPSANTSGKPSPTTAQHVY-HDLNGKIAAIVDDGPTTVGVESTILDMSVAT 186 Query: 188 KVRILRPGGLEIETLKRAIS---VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244 ILRPG + E ++ I ++ + V TP++PGM HYAP +QV + V+ Sbjct: 187 P-SILRPGAVTKEDIEAVIHRPVIDELHHVGAKQTPKAPGMKYKHYAPNAQVYI----VD 241 Query: 245 PRE------ALIRFGNVPIK--NIENAIISLN-------LSKTGKLKEAAFNLFNYMKIA 289 P + A I+ PI ++ I ++N +S + AA +LF ++ Sbjct: 242 PDDDWHDVVAWIKQHPQPIGVMAFDDIIKTINWPDNVDVISLGNDARTAAHDLFAELRDF 301 Query: 290 DDSGASSIAFS-SIPNHGLGIAINNRLERAAA 320 D+ A I F+ I G+G A NRL ++A Sbjct: 302 DNHPAYKIIFTQGIDPKGIGEAYMNRLNKSAG 333 >gi|292669718|ref|ZP_06603144.1| Sua5/YciO/YrdC/YwlC family protein [Selenomonas noxia ATCC 43541] gi|292648515|gb|EFF66487.1| Sua5/YciO/YrdC/YwlC family protein [Selenomonas noxia ATCC 43541] Length = 350 Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 113/344 (32%), Positives = 172/344 (50%), Gaps = 28/344 (8%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +I+ T S +A + +G +A PTETVYGL + + A R+YE K RP+ NPLI Sbjct: 4 EILHPTSSVDFERAAGLIQSGELVAFPTETVYGLGANGLDAAACTRIYEAKGRPSDNPLI 63 Query: 62 CHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 H++D++M + S + PL+ HL F PGP+T++L I + T L T R P Sbjct: 64 LHIADLTMAHEVTSNMPPLAAHLLTAFAPGPITVILP--KAAHIPDIVTGGLSTVGVRCP 121 Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 ++LI G P+A PSAN SG+ S T ++ + IPLI+DGG ++G+EST Sbjct: 122 DHTAARRLIRAAGVPIAAPSANTSGRPSPTTAA-MVYEDMAGRIPLILDGGSCRLGVEST 180 Query: 180 IVNVQCEKKVRILRPGGLEIETLKR---AISVELEYCVDETS-TPQSPGMLKSHYAPR-- 233 IV+ E + +LRPG + E + AI V ++ + + P++PGM +HYAPR Sbjct: 181 IVDCTEEGALTLLRPGAVTREMIAAELPAIEVRIDAALTAANEAPRAPGMKYTHYAPRVP 240 Query: 234 --------SQVR-------LRAIHVNPREALIRFGN--VPIKNIENAIISLNLSKTGKLK 276 +R LR R A+I ++ I A + N G Sbjct: 241 LTVYAGMGDDIRAALRAEFLRRTAAGERPAVIASNETLTALRAIIPAEHTYNCGARGNHS 300 Query: 277 EAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 A L++ ++ DD+ +S+ GLG+AI NRL +A+ Sbjct: 301 AFAACLYDALRCFDDTDITSLLAEGTGADGLGLAIMNRLRKASG 344 >gi|89095606|ref|ZP_01168500.1| sua5/yciO/yrdC/ywlC family protein [Bacillus sp. NRRL B-14911] gi|89089352|gb|EAR68459.1| sua5/yciO/yrdC/ywlC family protein [Bacillus sp. NRRL B-14911] Length = 346 Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 109/336 (32%), Positives = 166/336 (49%), Gaps = 20/336 (5%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 + S+ D +++A L +A PTETVYGL ++RN A+++++E K RP+ NPLI Sbjct: 12 VDSLNDYPQIKQAAALLAQNETVAFPTETVYGLGGNARNDEAVKKIFEAKGRPSDNPLII 71 Query: 63 HVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 H++D ++ P S L + FWPGPLT++ + + +TA L T R+P Sbjct: 72 HIADREQLEGIVESVPASADKLMEAFWPGPLTIIFN-KKDGQLSETATAGLNTVGIRMPD 130 Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 ++ G P+A PSANRSG+ S T H+ + I I+DGG + +G+EST+ Sbjct: 131 HPVALAILRESGVPVAAPSANRSGRPSPTTAGHV-KEDLNGRIAGIVDGGPTGVGVESTV 189 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAIS--VELEYCVDETSTPQSPGMLKSHYAP------ 232 ++ E V ILRPGG+ E L+R + DE P+SPGM HYAP Sbjct: 190 LDCTGEIPV-ILRPGGVTKEQLERVVGEVAADPALADEKEAPRSPGMKYRHYAPDAPLYI 248 Query: 233 ------RSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYM 286 R Q + H +A + + ++ + K L+ A +L+ + Sbjct: 249 VEGTRERIQELVNEQHTEGLKAGV-LTTAENEKFYDSDFTFICGKRANLETVAASLYEAL 307 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 + + SG I S P G+G AI NRL +AA R Sbjct: 308 RSFNSSGVDVIFSESFPAEGVGEAIMNRLLKAAGHR 343 >gi|229007631|ref|ZP_04165225.1| hypothetical protein bmyco0002_45100 [Bacillus mycoides Rock1-4] gi|228753642|gb|EEM03086.1| hypothetical protein bmyco0002_45100 [Bacillus mycoides Rock1-4] Length = 340 Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 116/329 (35%), Positives = 171/329 (51%), Gaps = 21/329 (6%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L+KA + L IA PTETVYGL ++ N AI +++E K RP+ NPLI H+ Sbjct: 10 DYPQLQKAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGSK 69 Query: 68 SMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 S +K P ++ L K FWPGPLT++L I TA L T R+P Sbjct: 70 SQLKGIVREIPEVAEVLMKHFWPGPLTIILP--KKEGISEKVTAGLDTVGVRMPDHPVAL 127 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LIE P+A PSANRSG+ S T H+ + +I I+DGG + +G+EST+++ C Sbjct: 128 ALIEEANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVID--C 184 Query: 186 EKKV-RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPR--------S 234 +V ILRPGG+ E L+ I +V L+ + DE P++PGM +HYAP+ S Sbjct: 185 TSEVPTILRPGGITKEQLEEVIGTVSLDPALKDEKEKPKAPGMKYTHYAPKAPLSIVEGS 244 Query: 235 QVRLRAIHVNPREALIRFGNVPIKNIEN---AIISLNLSKTGKLKEAAFNLFNYMKIADD 291 + ++ + ++ G + + ++ A + L+ L A L++ ++ D Sbjct: 245 RDFIQQLVDQKKDEGYTVGVLTTEEYQHEYKADVVLSCGVRSDLASVATKLYDVLRTFDA 304 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320 S I S PN G+G AI NRL +AA Sbjct: 305 SKVDVIFSESFPNEGIGNAIMNRLTKAAG 333 >gi|218900451|ref|YP_002448862.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus G9842] gi|228968453|ref|ZP_04129442.1| hypothetical protein bthur0004_52280 [Bacillus thuringiensis serovar sotto str. T04001] gi|218543168|gb|ACK95562.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus G9842] gi|228791233|gb|EEM38846.1| hypothetical protein bthur0004_52280 [Bacillus thuringiensis serovar sotto str. T04001] Length = 346 Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 113/325 (34%), Positives = 169/325 (52%), Gaps = 21/325 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++A + L +A PTETVYGL ++ + AI +++E K RP+ NPLI H+ S + Sbjct: 21 LQEAAKLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQLD 80 Query: 72 KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P++ L FWPGPLT++L I TA L T R+P LIE Sbjct: 81 GIVKEIPPVAEKLMAHFWPGPLTIILP--RKEGISERVTAGLNTVGVRMPDHPVALALIE 138 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+A PSANRSG+ S T H+ + +I I+DGG + +G+EST+++ C V Sbjct: 139 EANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVID--CTSTV 195 Query: 190 -RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPR--------SQVRL 238 ILRPGG+ E L+ I +V L+ + DE P+SPGM +HYAP+ S+ + Sbjct: 196 PTILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255 Query: 239 RAIHVNPREALIRFG---NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 + + +E + G +++ NA + L+ L A L++ ++ D S Sbjct: 256 QQLVDEKKEEGFKVGVLTTEEYQHVYNADVILSCGVRSDLASVATKLYDVLRTFDASEVD 315 Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320 I S PN G+G AI NRL +AA Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAG 340 >gi|229000111|ref|ZP_04159681.1| hypothetical protein bmyco0003_46640 [Bacillus mycoides Rock3-17] gi|228759648|gb|EEM08624.1| hypothetical protein bmyco0003_46640 [Bacillus mycoides Rock3-17] Length = 343 Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 116/329 (35%), Positives = 171/329 (51%), Gaps = 21/329 (6%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L+KA + L IA PTETVYGL ++ N AI +++E K RP+ NPLI H+ Sbjct: 13 DYPQLQKAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGSK 72 Query: 68 SMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 S +K P ++ L K FWPGPLT++L I TA L T R+P Sbjct: 73 SQLKGIVREIPEVAEVLMKHFWPGPLTIILP--KKEGISEKVTAGLDTVGVRMPDHPVAL 130 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LIE P+A PSANRSG+ S T H+ + +I I+DGG + +G+EST+++ C Sbjct: 131 ALIEEANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVID--C 187 Query: 186 EKKV-RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPR--------S 234 +V ILRPGG+ E L+ I +V L+ + DE P++PGM +HYAP+ S Sbjct: 188 TSEVPTILRPGGITKEQLEEVIGTVSLDPALKDEKEKPKAPGMKYTHYAPKAPLSIVEGS 247 Query: 235 QVRLRAIHVNPREALIRFGNVPIKNIEN---AIISLNLSKTGKLKEAAFNLFNYMKIADD 291 + ++ + ++ G + + ++ A + L+ L A L++ ++ D Sbjct: 248 RDFIQQLVDQKKDEGYTVGVLTTEEYQHEYKADVVLSCGVRSDLASVATKLYDVLRTFDA 307 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320 S I S PN G+G AI NRL +AA Sbjct: 308 SKVDVIFSESFPNEGIGNAIMNRLTKAAG 336 >gi|75762684|ref|ZP_00742523.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228903800|ref|ZP_04067916.1| hypothetical protein bthur0014_49550 [Bacillus thuringiensis IBL 4222] gi|74489830|gb|EAO53207.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228855827|gb|EEN00371.1| hypothetical protein bthur0014_49550 [Bacillus thuringiensis IBL 4222] Length = 346 Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 113/325 (34%), Positives = 169/325 (52%), Gaps = 21/325 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++A + L +A PTETVYGL ++ + AI +++E K RP+ NPLI H+ S + Sbjct: 21 LQEAAKLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQLD 80 Query: 72 KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P++ L FWPGPLT++L I TA L T R+P LIE Sbjct: 81 GIVKEIPPVAEKLMAHFWPGPLTIILP--RKEGISERVTAGLNTVGVRMPDHPVALALIE 138 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+A PSANRSG+ S T H+ + +I I+DGG + +G+EST+++ C V Sbjct: 139 EANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVID--CTSTV 195 Query: 190 -RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPR--------SQVRL 238 ILRPGG+ E L+ I +V L+ + DE P+SPGM +HYAP+ S+ + Sbjct: 196 PTILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255 Query: 239 RAIHVNPREALIRFG---NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 + + +E + G +++ NA + L+ L A L++ ++ D S Sbjct: 256 QQLVDEKKEEGFKVGVLTTEEYQHVYNADVILSCGVRSDLASVATKLYDVLRTFDASEVD 315 Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320 I S PN G+G AI NRL +AA Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAG 340 >gi|229105918|ref|ZP_04236542.1| hypothetical protein bcere0019_50420 [Bacillus cereus Rock3-28] gi|228677492|gb|EEL31745.1| hypothetical protein bcere0019_50420 [Bacillus cereus Rock3-28] Length = 342 Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 112/324 (34%), Positives = 169/324 (52%), Gaps = 19/324 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++A L +A PTETVYGL ++ N AI +++E K RP+ NPLI H+ S + Sbjct: 17 LQEAARLLRENEAVAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLD 76 Query: 72 KHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + + P++ L + FWPGPLT++L I TA L T R+P LIE Sbjct: 77 GIVNEIPPVAEKLMEHFWPGPLTIILP--RKEGISEKVTAGLNTVGVRMPDHPVALALIE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+A PSANRSG+ S T H+ + +I I+DGG + +G+EST+++ E Sbjct: 135 EANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVIDCTSEIPT 193 Query: 190 RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPR--------SQVRLR 239 ILRPGG+ E L+ I +V L+ + DE P+SPGM +HYAP+ S+ ++ Sbjct: 194 -ILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSRKFIQ 252 Query: 240 AIHVNPREALIRFG---NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296 + +E + G +++ +A + L+ L A L++ ++ D S Sbjct: 253 RLVDKKKEEGFKVGVLTTEEYQHVYSADVVLSCGMRSDLASVATKLYDVLRTFDASEVDV 312 Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320 I S PN G+G AI NRL +AA Sbjct: 313 IFSESFPNDGIGNAIMNRLTKAAG 336 >gi|262277471|ref|ZP_06055264.1| Sua5/YciO/YrdC family protein [alpha proteobacterium HIMB114] gi|262224574|gb|EEY75033.1| Sua5/YciO/YrdC family protein [alpha proteobacterium HIMB114] Length = 321 Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 119/321 (37%), Positives = 164/321 (51%), Gaps = 16/321 (4%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 I S TD N L+K + L A+PTETVYGLA ++ + A+ ++Y +KKRP NPLI Sbjct: 14 IFSPTDKN-LKKCSKILKNHGIAALPTETVYGLAGNAYSNRAVTKIYSLKKRPKKNPLIV 72 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC- 121 H + + K +P L + F PGP+T VL L + I T RVP Sbjct: 73 HFDCLQSILKETEQNPYLQKLYRKFSPGPITYVLKLKKKSKISKKLINKNGTIACRVPAN 132 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 +K+I PLA PSAN S +S T+ K + K+I I+DG SK+G+EST+V Sbjct: 133 AHFRKIIRLAHTPLAAPSANISNHVSPTSSKDVF-DEFGKKIKFILDGKRSKVGIESTVV 191 Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241 N+ KV LRPG + +++ I + E SPG LK HY+P V L Sbjct: 192 NLVGRPKV--LRPGKITKYEIQKVIKHVTKNISKEI---LSPGQLKKHYSPGIPVFLNQQ 246 Query: 242 HVNPREALIRFGNVPI--KNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF 299 P AL+ FG + KNI LSK+ L E A L+ ++ +I Sbjct: 247 KPKPYGALLVFGKTKLKGKNI------FYLSKSKSLDECAKKLYLKLRQIKKLKYKTITV 300 Query: 300 SSIPNHGLGIAINNRLERAAA 320 + IPN G+GIAINNRL+RA++ Sbjct: 301 TKIPNQGIGIAINNRLKRASS 321 >gi|152977511|ref|YP_001377028.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152026263|gb|ABS24033.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cytotoxicus NVH 391-98] Length = 347 Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 114/329 (34%), Positives = 167/329 (50%), Gaps = 21/329 (6%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L++A + L +A PTETVYGL ++ N AI +++E K RP+ NPLI H+ Sbjct: 17 DYPQLQEAAKLLRENEAVAFPTETVYGLGANAMNDEAIVKIFEAKGRPSDNPLIVHIGSK 76 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125 S + V P++ L K FWPGPLT++L I TA L T R+P Sbjct: 77 SQLTDIVREVPPVAEVLMKHFWPGPLTIILP--KKDGISEKVTAGLDTVGVRMPDHEVAL 134 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LIE P+A PSANRSG+ S T H+ + +I I+DGG + +G+EST+++ C Sbjct: 135 ALIEAANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVID--C 191 Query: 186 EKKV-RILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQVRL---- 238 KV ILRPGG+ E L+ I V + + DE P++PGM +HYAP++ + + Sbjct: 192 TSKVPTILRPGGITKEQLEEVIGPVSFDPALKDEKEKPKAPGMKYTHYAPKAPLSIVEGS 251 Query: 239 -----RAIHVNPREALI--RFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291 + + RE +++ A + L+ L A L++ ++ D Sbjct: 252 RDFIQQLVEKKKREGYTVGVLTTEEYQHVYQADVVLSCGLRRDLASVATKLYDVLRTFDT 311 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320 S I S PN G+G AI NRL +AA Sbjct: 312 SKVDCIFSESFPNEGIGNAIMNRLIKAAG 340 >gi|293571482|ref|ZP_06682509.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E980] gi|291608487|gb|EFF37782.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E980] Length = 341 Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 110/331 (33%), Positives = 175/331 (52%), Gaps = 20/331 (6%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L++A + L AG +A PTETVYGL ++ P +++++ +K RP NPLI HV+ Sbjct: 7 DETELKEAAKALKAGELVAFPTETVYGLGANALLPNTVKKVFSVKGRPQDNPLIVHVASF 66 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 VK++ + P + + K FWPGPLTL+ + T + + T L TA FR+P T Sbjct: 67 EQVKEYVDNFHPETEKIVKNFWPGPLTLIFKIKKDT-LPSVVTGGLSTAAFRMPDNKKTL 125 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 ++IE G PL PSAN SG+ S T H+ + +I II+ G ++IG+EST++++ Sbjct: 126 EVIELSGVPLVGPSANTSGKPSPTTADHVF-HDLQGKITGIIEDGATRIGVESTVLDLSN 184 Query: 186 EKKV-RILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRL--- 238 + ILRPG + E ++ I + ++ V E TP++PGM HY+P ++V + Sbjct: 185 PTAMPMILRPGAVTKEQIEAVIGSPVAVDQHLVKENETPKAPGMKYKHYSPDTRVLMVRD 244 Query: 239 --RAIHVN-PREALIRFGNVPIKNIENAI----ISLNLSKTGKLKEAAFNLFNYMKIADD 291 +I V + IR G + I + + ++ + ++ AA LF ++ D+ Sbjct: 245 SDWSIAVQWAKNKKIRAGVIASPEIADQVRTDTAAVYMYNDNSVEAAAKGLFAGLRGLDE 304 Query: 292 S--GASSIAFSSIPNHGLGIAINNRLERAAA 320 G I P GLG A NRL++AA Sbjct: 305 PTLGLDLIFVQVYPETGLGNAYMNRLKKAAG 335 >gi|288574653|ref|ZP_06393010.1| Sua5/YciO/YrdC/YwlC family protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570394|gb|EFC91951.1| Sua5/YciO/YrdC/YwlC family protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 322 Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 111/321 (34%), Positives = 167/321 (52%), Gaps = 17/321 (5%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + +A L +G + PTETVYGL D + A+ ++E K RP+ NPLI HV D Sbjct: 13 DREVIDRAVSILKSGGLVGFPTETVYGLGADGLDGKAVSGIFEAKGRPSDNPLILHVGDP 72 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKK 126 V+K A VD + + K WPGPLTLVL L + P TA L T R+P Sbjct: 73 ESVRKIAKVDDRADMIMKNLWPGPLTLVLPALPI--VPPEVTAGLDTVGVRMPSHPVALA 130 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L++ P+A PSAN SG+ S T+ + + + + LIIDGG +++GLEST+++V E Sbjct: 131 LLQACPFPVAAPSANTSGRPSPTDAVTV-ARDLDDRVDLIIDGGATEVGLESTVLDVTGE 189 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL----RAIH 242 V +LRPGGL +E L + E+ V E +SPG HYAP + L + H Sbjct: 190 VPV-LLRPGGLSVEVLADLLG-EIALPVGELELKRSPGTRYRHYAPSVPLILWIPEESGH 247 Query: 243 VNPREALIRFGNV-PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSS 301 + E+ G V P+ ++ +II ++ G+ LF+ ++ + +I Sbjct: 248 PDFGESCRYIGMVEPVFPVDKSIIFDSVESYGR------GLFSALRELEREWDGTIVAQW 301 Query: 302 IPNHGLGIAINNRLERAAAPR 322 + G+G+A+ +RL RA+ R Sbjct: 302 PDSDGIGLALRDRLRRASGGR 322 >gi|326692968|ref|ZP_08229973.1| putative translation factor [Leuconostoc argentinum KCTC 3773] Length = 335 Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 105/324 (32%), Positives = 169/324 (52%), Gaps = 20/324 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A L AG +A PTETVYGL D+ N A+++++ K RPA NPLI V+D+ + Sbjct: 11 VQQAGALLKAGEVVAFPTETVYGLGADATNDAAVKKVFLAKNRPADNPLIMTVADVEQLT 70 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIET 130 ++ + L FWPG LT+++ + + L T L+T FR+P T + +I Sbjct: 71 PFVTISEAARQLMTAFWPGSLTIIMP-IKPDQVSMLVTGGLQTVAFRLPANETARAVIRA 129 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G P+ PSAN SG+ S T +H+ + I I+D G +++G+EST++++ + Sbjct: 130 AGVPIVGPSANTSGKPSPTTAQHVW-HDMQGRIAAIVDDGPTEVGVESTVIDMSTDTPT- 187 Query: 191 ILRPGGLEIETLKRAISVELEYCVDETS-----TPQSPGMLKSHYAPRSQV----RLRAI 241 ILRPG + + L+ + + TS TP++PGM HYAP V RL A+ Sbjct: 188 ILRPGAVTQQQLEAVLQQPVFDATSTTSVASHVTPKAPGMKYRHYAPDKTVVMFDRLDAL 247 Query: 242 HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKE----AAFNLFNYMKIADDS-GASS 296 + R L V ++ A + L +++T L E A LF ++ D++ ++ Sbjct: 248 AL--RSNLTAQDVVMAQDDTLATLQLPMTQTWSLGETLESATEQLFAGLRFYDETPEVAT 305 Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320 I +P G+G A NNRL +AA Sbjct: 306 IYVEKMPPIGIGKAYNNRLAKAAG 329 >gi|325264267|ref|ZP_08130998.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium sp. D5] gi|324030338|gb|EGB91622.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium sp. D5] Length = 511 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 112/339 (33%), Positives = 171/339 (50%), Gaps = 35/339 (10%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + +A E L G +A PTETVYGL ++ + A ++ Y K RP+ NPLI H++D+ Sbjct: 17 DKEVILEAGEVLKNGGLVAFPTETVYGLGANALDEEAAKKTYAAKGRPSDNPLIVHIADL 76 Query: 68 SMVKK-HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCGF-T 124 + + +V P + LA FWPGPLT++ + +DI PL +T L T R+P Sbjct: 77 QALDEITENVPPETEELAFHFWPGPLTMIFE---KSDIVPLGTTGGLGTVAVRMPSDLIA 133 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 ++LI G ++ PSAN SG+ S T +H+ + + +I +I+DGG IGLESTI+++ Sbjct: 134 RELILAAGGYVSAPSANTSGRPSPTTAQHV-AEDLDGKIDMILDGGSVDIGLESTILDMT 192 Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVDE-------TSTPQSPGMLKSHYAPRSQVR 237 + ILRPG + + L+ I VDE T P++PGM HYAP++++ Sbjct: 193 VTPPM-ILRPGAITADMLEEVIGT---VSVDETILGSESTQAPKAPGMKYRHYAPKARLM 248 Query: 238 L----------------RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFN 281 + H R+A I N + +I N+ K A N Sbjct: 249 IVEGTLREEVFAIRQLAYEAHRQGRKAGIIATNETMPFYTYGLIK-NIGSRDNEKTIARN 307 Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 L+ ++ D+ + I S G+G AI NRLE+AA Sbjct: 308 LYAVLREFDEEDVAEIFSESFAAQGIGKAIMNRLEKAAG 346 >gi|187734781|ref|YP_001876893.1| Sua5/YciO/YrdC/YwlC family protein [Akkermansia muciniphila ATCC BAA-835] gi|187424833|gb|ACD04112.1| Sua5/YciO/YrdC/YwlC family protein [Akkermansia muciniphila ATCC BAA-835] Length = 348 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 120/332 (36%), Positives = 166/332 (50%), Gaps = 47/332 (14%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-- 82 + IPTETVYGL D+ NP A+ R++E K RP+ +PLI HV S V+K+ +V P L Sbjct: 31 VGIPTETVYGLGADALNPEAVARIFEAKGRPSFDPLIIHVHHGSEVEKYTAV-PEGLKDL 89 Query: 83 ---LAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCG-FTKKLIETYGHPLAI 137 LA FWPGPLTLV L DI P + T+ L T RV + + + G P+A Sbjct: 90 VHTLASRFWPGPLTLV---LPKADIIPDIVTSGLPTVAVRVSAHPAMRGVAKALGRPIAA 146 Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK----VRILR 193 PSANR G IS T+ + + I +I+D G GLESTIV ++K + +LR Sbjct: 147 PSANRFGHISPTSASAV-QKELGGSIEMILDAGACSEGLESTIVRPVLDEKGKPSLELLR 205 Query: 194 PGGLEIETLKRAISV--ELEYC--VDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREAL 249 G + E + + V C V E S +PG L SHYAPR + L + P E Sbjct: 206 EGPVTREQFRNLVKVVRRKPSCRPVSEESPADAPGQLTSHYAPRKPMLL----LEPGENF 261 Query: 250 IRFGNVPIKNIENAIISLNLSK-----------------TGKLKEAAFNLFNYMKIADDS 292 P++ ++ ++S + +G+L EAA LF M+ D++ Sbjct: 262 -----APVEGVKYGLLSYEGTSALAREGDWAEVVAMSPGSGRLAEAAVRLFALMRQMDEN 316 Query: 293 GA-SSIAFSSIPNHGLGIAINNRLERAAAPRN 323 A I S+P GLG AI +RL RA+A R Sbjct: 317 EAIDVIVAESVPESGLGRAIMDRLRRASAVRE 348 >gi|319788962|ref|YP_004090277.1| Sua5/YciO/YrdC/YwlC family protein [Ruminococcus albus 7] gi|315450829|gb|ADU24391.1| Sua5/YciO/YrdC/YwlC family protein [Ruminococcus albus 7] Length = 338 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 109/334 (32%), Positives = 175/334 (52%), Gaps = 28/334 (8%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D N++ A E + AG + IPTETVYGL ++ + A+ +++ K RPA NPLI H+S Sbjct: 10 DENSINTAAELIRAGEVVGIPTETVYGLGANAFDEDAVHKIFAAKGRPADNPLIVHISSF 69 Query: 68 SMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTAN-LKTACFRVPCGFTK 125 +K + P L+ A+ FWPGPLT+++ +D PL T+ L T R+P T Sbjct: 70 EEIKPLVTEIPALAEKCAEKFWPGPLTMIM---PKSDKIPLVTSGGLDTVGIRMPSNATA 126 Query: 126 K-LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + +I+ G P+A PSAN SG S T H+L+ + IP I+DGG +G+EST+++ + Sbjct: 127 RAIIKASGCPIAAPSANLSGSPSPTTAMHVLND-MDGRIPAIVDGGACGVGVESTVISFE 185 Query: 185 CEKKVRILRPGGLEIETLKR-----AISVELEYCVDETSTPQSPGMLKSHYAPRSQV--- 236 +R+LRPG + +E LK + + + E + +SPGM HYAP+++V Sbjct: 186 G-NGIRLLRPGFISVEDLKEITENVMVDKGVLEMLGEGAKVRSPGMKYKHYAPKAEVTII 244 Query: 237 -----RLRAI---HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKI 288 + A + + + L+ F + + L + +E A +LF+ ++ Sbjct: 245 DGSSEQFNAFCRENASADDVLMVFTEADAQGLPQRKTVLGATD----EEQAQHLFDALRG 300 Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 D+ A + G+G+A+ NRL RAAA R Sbjct: 301 FDEMCAEKVWARCPRKTGVGLAVYNRLLRAAAFR 334 >gi|228994044|ref|ZP_04153945.1| hypothetical protein bpmyx0001_47670 [Bacillus pseudomycoides DSM 12442] gi|228765692|gb|EEM14345.1| hypothetical protein bpmyx0001_47670 [Bacillus pseudomycoides DSM 12442] Length = 347 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 116/329 (35%), Positives = 171/329 (51%), Gaps = 21/329 (6%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L+KA + L IA PTETVYGL ++ N AI +++E K RP+ NPLI H+ Sbjct: 17 DYPQLQKAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGSK 76 Query: 68 SMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 S +K P ++ L K FWPGPLT++L I TA L T R+P Sbjct: 77 SQLKGIVRGIPEVAEVLMKHFWPGPLTIILP--KKEGISEKVTAGLDTVGVRMPDHPVAL 134 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LIE P+A PSANRSG+ S T H+ + +I I+DGG + +G+EST+++ C Sbjct: 135 ALIEEANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVID--C 191 Query: 186 EKKV-RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPR--------S 234 +V ILRPGG+ E L+ I +V L+ + DE P++PGM +HYAP+ S Sbjct: 192 TSEVPTILRPGGITKEQLEEVIGTVSLDPALKDEKEKPKAPGMKYTHYAPKAPLSIVEGS 251 Query: 235 QVRLRAIHVNPREALIRFGNVPIKNIEN---AIISLNLSKTGKLKEAAFNLFNYMKIADD 291 + ++ + ++ G + + ++ A + L+ L A L++ ++ D Sbjct: 252 RDFIQQLIDQKKDEGYTVGVLTTEEYQHEYKADVVLSCGVRSDLASVATKLYDVLRTFDA 311 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320 S I S PN G+G AI NRL +AA Sbjct: 312 SKVDVIFSESFPNEGIGNAIMNRLTKAAG 340 >gi|154687810|ref|YP_001422971.1| YwlC [Bacillus amyloliquefaciens FZB42] gi|154353661|gb|ABS75740.1| YwlC [Bacillus amyloliquefaciens FZB42] Length = 346 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 117/332 (35%), Positives = 171/332 (51%), Gaps = 19/332 (5%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 +S TD + +A E L +A PTETVYGL ++ N A+ ++YE K RP+ NPLI H Sbjct: 14 LSTTDPQ-ITQAAELLRQNEVVAFPTETVYGLGANAENTEAVTKIYEAKGRPSDNPLIVH 72 Query: 64 VSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 +S IS + + S P + L KLFWPG LTLVL + P TA L+T R+P Sbjct: 73 ISHISQLDRFISHIPETAKKLMKLFWPGALTLVLPCKPGV-LSPRVTAGLETVAVRMPDH 131 Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 LI + G P+A PSAN SG+ S T +H+ + + I I+DGG + IG+EST++ Sbjct: 132 PVALALISSAGLPIAAPSANLSGKPSPTKAEHV-AHDLNGRIAGIVDGGATGIGVESTVL 190 Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQVRL- 238 + ++ V +LRPGG+ E ++ A L + +E P SPGM +HYAP + + + Sbjct: 191 SCTGKQPV-LLRPGGVTKEQIESAAGPILVDKGLTEEDEVPISPGMKYTHYAPSAPMAIA 249 Query: 239 ----RAIHVNPREALIRFGNVPIKNIENAIISLNLSKT------GKLKEAAFNLFNYMKI 288 R I R + I E S T L+ A L++ ++ Sbjct: 250 VGGARRIQELADAYKSRGKRIGILTTEENADSYQADYTKVCGRRADLETVASALYDALRS 309 Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 D++ I S P+ G+G+AI NRL +AA Sbjct: 310 FDEAEVDMIISESFPDTGVGLAIMNRLMKAAG 341 >gi|257870911|ref|ZP_05650564.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus gallinarum EG2] gi|257805075|gb|EEV33897.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus gallinarum EG2] Length = 342 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 111/328 (33%), Positives = 178/328 (54%), Gaps = 24/328 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +A + L AG +A PTETVYGL ++ P A+ ++Y +K RP+ NPLI H++D +K Sbjct: 11 LSEAAKILAAGGLVAFPTETVYGLGANALLPEAVAQVYAVKGRPSDNPLIVHLADPEQLK 70 Query: 72 KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + ++ P + L FWPGPLTL+ + + + + + T L TA FR+P T +I+ Sbjct: 71 DYVDNLHPAAEKLMAKFWPGPLTLIFSIKNNS-LPSIVTGGLSTAAFRMPANKKTLSVIK 129 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV-QCEKK 188 PL PSAN SG+ S T+ +H+L + +I +ID G ++IG+EST++++ Sbjct: 130 QAHVPLVGPSANTSGKPSPTSAEHVL-HDLKGKIAGVIDDGTTRIGVESTVLDLSDPTAN 188 Query: 189 VRILRPGGLEIETLKRAISVELE---YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245 ILRPG + E L+ + E+E + V E P++PGM HYAP ++V + P Sbjct: 189 PMILRPGAVTKEQLETVLGSEVEIDKHLVSEGERPKAPGMKYKHYAPDTKVVMVRSEDWP 248 Query: 246 ------REALIRFGNVPIKNI------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDS- 292 ++ +R G + +I E A + + T ++ AA LF ++ D+S Sbjct: 249 AALDWVKQKRLRAGVLAGPSICETARFETAAVYMYADDT--VEAAAKGLFAGLRALDESI 306 Query: 293 -GASSIAFSSIPNHGLGIAINNRLERAA 319 G I ++ P G+G A NRL++AA Sbjct: 307 AGLEIILAAAFPETGMGSAYMNRLKKAA 334 >gi|257880059|ref|ZP_05659712.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 1,230,933] gi|257891150|ref|ZP_05670803.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 1,231,410] gi|257893964|ref|ZP_05673617.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 1,231,408] gi|260560328|ref|ZP_05832504.1| sua5/yciO/yrdC/ywlC family protein [Enterococcus faecium C68] gi|257814287|gb|EEV43045.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 1,230,933] gi|257827510|gb|EEV54136.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 1,231,410] gi|257830343|gb|EEV56950.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 1,231,408] gi|260073673|gb|EEW61999.1| sua5/yciO/yrdC/ywlC family protein [Enterococcus faecium C68] Length = 331 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 109/328 (33%), Positives = 173/328 (52%), Gaps = 22/328 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E L G +A PTETVYGL ++ P A+++++ +K RP NPLI HV+ VK Sbjct: 1 MQEAAEALKEGELVAFPTETVYGLGANALLPNAVKKVFSVKGRPQDNPLIVHVASFEQVK 60 Query: 72 KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 ++ + P + + K FWPGPLTL+ + T + + T L TA FR+P T ++IE Sbjct: 61 EYVDNFHPAAEKIVKNFWPGPLTLIFKIKKDT-LPSVVTGGLSTAAFRIPDNKKTLEVIE 119 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL PSAN SG+ S T H+ + +I IID G ++IG+EST++++ + Sbjct: 120 LSGVPLVGPSANTSGKPSPTTADHVY-HDLQGKITGIIDDGATRIGVESTVLDLSDPTAM 178 Query: 190 -RILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRL------- 238 ILRPG + E ++ I + ++ V E TP++PGM HY+P ++V + Sbjct: 179 PMILRPGAVTKEQIEAVIESPVAIDQHLVKENETPKAPGMKYKHYSPDTRVLMVRDGDWS 238 Query: 239 RAIHVNPREALIRFGNVPIKNIENAI----ISLNLSKTGKLKEAAFNLFNYMKIADDS-- 292 A+ + IR G + I + + ++ + ++ AA LF ++ D+ Sbjct: 239 TAVQW-AKNKKIRAGVIASPEIADQVRTDTAAVYMYNDNSVEAAAKGLFAGLRGLDEPTL 297 Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAA 320 G I P GLG A NRL++AA Sbjct: 298 GLDLIFVQVYPETGLGNAYMNRLKKAAG 325 >gi|228942472|ref|ZP_04105009.1| hypothetical protein bthur0008_51020 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975404|ref|ZP_04135960.1| hypothetical protein bthur0003_51490 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228982041|ref|ZP_04142334.1| hypothetical protein bthur0002_51990 [Bacillus thuringiensis Bt407] gi|228777705|gb|EEM25979.1| hypothetical protein bthur0002_51990 [Bacillus thuringiensis Bt407] gi|228784386|gb|EEM32409.1| hypothetical protein bthur0003_51490 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817214|gb|EEM63302.1| hypothetical protein bthur0008_51020 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326943123|gb|AEA19019.1| SUA5 protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 346 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 113/325 (34%), Positives = 169/325 (52%), Gaps = 21/325 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++A + L +A PTETVYGL ++ + AI +++E K RP+ NPLI H+ S + Sbjct: 21 LQEAAKLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQLD 80 Query: 72 KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P++ L FWPGPLT++L I TA L T R+P LIE Sbjct: 81 GIVKEIPPVAEKLMAHFWPGPLTIILP--RKEGISERVTAGLNTVGVRMPDHPVALALIE 138 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+A PSANRSG+ S T H+ + +I I+DGG + +G+EST+++ C V Sbjct: 139 EANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVID--CTSTV 195 Query: 190 -RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPR--------SQVRL 238 ILRPGG+ E L+ I +V L+ + DE P+SPGM +HYAP+ S+ + Sbjct: 196 PTILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255 Query: 239 RAIHVNPREALIRFG---NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 + + +E + G +++ NA + L+ L A L++ ++ D S Sbjct: 256 QHLVDEKKEEGFKVGVLTTEEYQHVYNADVILSCGVRSDLASVATKLYDVLRTFDASEVD 315 Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320 I S PN G+G AI NRL +AA Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAG 340 >gi|20806674|ref|NP_621845.1| putative translation factor (Sua5) [Thermoanaerobacter tengcongensis MB4] gi|20515125|gb|AAM23449.1| putative translation factor (Sua5) [Thermoanaerobacter tengcongensis MB4] Length = 355 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 112/331 (33%), Positives = 173/331 (52%), Gaps = 32/331 (9%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A E + G +A PTETVYG+ +S + A++R++ K RP NPLI H++ + V + A Sbjct: 21 AAEVIKKGGLVAFPTETVYGIGANSFDEEAVKRIFIAKGRPQDNPLILHIALMDQVYELA 80 Query: 75 SVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132 + P + LA FWPGPLT+VL + + ++TA + T R+P LI+ G Sbjct: 81 AEFPEKAKKLAHRFWPGPLTVVLK--KSDKVPYVNTAGMNTVAIRMPSNPIAHLLIKRAG 138 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192 P++ PSAN SG+ S T+ H++ K + +IIDGG +GLEST+V++ E V IL Sbjct: 139 VPISAPSANVSGKPSPTDASHVIEDLYGK-VDVIIDGGKCDVGLESTVVDLTEEVPV-IL 196 Query: 193 RPGGLEIETLKRAI-SVELEYCV----DETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 RPG + +E LK + V+L+ + DE P+SPGM HY+P+++V I P + Sbjct: 197 RPGAVTLEMLKEVLGEVKLDPSLLTRPDENIKPKSPGMKYKHYSPKAEVY---IVKGPLD 253 Query: 248 ALIR----FGNVPIKNIENAIISLNLSKTGKLKEA--------------AFNLFNYMKIA 289 +++ +KN + I + + + KE A NLF ++ Sbjct: 254 KVVKKIQQLAKNQLKNGKKVGIMATVQTSTQYKEGEIIVVGDRDKPETIAKNLFETLREF 313 Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 D G + S +G+AI NRLE+AA Sbjct: 314 DRRGVEVVFAESFNYDDIGLAIMNRLEKAAG 344 >gi|320161912|ref|YP_004175137.1| hypothetical protein ANT_25110 [Anaerolinea thermophila UNI-1] gi|319995766|dbj|BAJ64537.1| hypothetical protein ANT_25110 [Anaerolinea thermophila UNI-1] Length = 360 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 120/340 (35%), Positives = 178/340 (52%), Gaps = 37/340 (10%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV---SD 66 +AL +A E L +G +A PTETVYGL ++ + A++R++E K RPA +PLI H+ Sbjct: 19 DALLEATECLRSGGLVAFPTETVYGLGGNALDGRAVQRIFEAKGRPANDPLIVHLPSADA 78 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FT 124 + MV K ++ + LA+ FWPGPLTL+ L D PLS TA L T RVP Sbjct: 79 LPMVVK--TIPTIVSTLAEHFWPGPLTLI---LPRGDNVPLSVTAGLDTVAVRVPSHPVA 133 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + L++ G +A PSANR G +S T+ +H+L + I +++DGG + IG+EST++++ Sbjct: 134 QALLQMSGLAIAAPSANRFGGVSPTSAEHVL-RDLEGRIEMVLDGGSTPIGVESTVLDIT 192 Query: 185 CEKKVRILRPGGLEIETLKRAIS-VE-LEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242 RILRPGG+ E L+ + VE LE + SPG+L HYAP RL + Sbjct: 193 APIP-RILRPGGISREALEAVLGRVELLERKASQEEAQASPGLLDKHYAPH-HARLILLE 250 Query: 243 VNPREAL---------------IRFGN-VPIKNIEN------AIISLNLSKTGKLKEAAF 280 + + L +R G V +++ A+ L L L A Sbjct: 251 IPQTQELWEEFTHQVAQAKKEGLRVGALVADEDLTYLDAHFPALARLALGSLSDLAAVAR 310 Query: 281 NLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 NL+ M+ D++G + GLG+AI +RL RAA+ Sbjct: 311 NLYAGMRAMDEAGIDILLVRDFGTGGLGLAIRDRLYRAAS 350 >gi|268610025|ref|ZP_06143752.1| Sua5/YciO/YrdC/YwlC family protein [Ruminococcus flavefaciens FD-1] Length = 337 Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 119/349 (34%), Positives = 176/349 (50%), Gaps = 47/349 (13%) Query: 1 MQIMSITDSNA-LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 M + ++DS A L KA + + G + IPTETVYGL D+ N A+R ++ K RPA NP Sbjct: 1 MDTVLLSDSEADLLKAAKLIKDGNIVGIPTETVYGLGADASNEAAVRNIFAAKGRPADNP 60 Query: 60 LICHVSDIS-MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 LI H++D S VK +S+ L+ LA+ F PGPLT+VL I +++ L T R Sbjct: 61 LIVHLADFSHAVKYTSSIPQLAYRLAERFCPGPLTMVLP--KNDSIPMVTSGGLDTVGIR 118 Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 VP ++IE G P+A PSAN SG S T+ H++ + + ++ I+DGG S+ G+E Sbjct: 119 VPSHPVMHRIIELSGCPIAAPSANTSGYPSPTSAAHVM-NDMNGKVAAIVDGGESEFGVE 177 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDET-------------STPQSPG 224 ST++ ++ E VRILRPG + E L LE C DE SPG Sbjct: 178 STVIAIEGESTVRILRPGCITREML-------LELC-DEVIIDHAILNELAAGEKAASPG 229 Query: 225 MLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGK---------- 274 M HY+P++ + V L F + K+ SL + G+ Sbjct: 230 MKYKHYSPKADI------VMVEGDLDSFIDYVSKHDPENTFSLIYDEDGEKFPYRYMTYG 283 Query: 275 ---LKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 L++A +F ++ D+ GA + + G+G+A+ NRL RAA Sbjct: 284 GTSLQQAHL-IFAKLRELDEIGAEKVFVRAPSKDGVGLAVYNRLIRAAG 331 >gi|227552471|ref|ZP_03982520.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX1330] gi|227178383|gb|EEI59355.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX1330] Length = 341 Score = 157 bits (396), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 110/332 (33%), Positives = 173/332 (52%), Gaps = 22/332 (6%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L++A + L AG +A PTETVYGL ++ P +++++ +K RP NPLI HV+ Sbjct: 7 DETELKEAAKALKAGELVAFPTETVYGLGANALLPNTVKKVFSVKGRPQDNPLIVHVASF 66 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 VK++ + P + + K FWPGPLTL+ + T + + T L TA FR+P T Sbjct: 67 EQVKEYVDNFHPETEKIVKNFWPGPLTLIFKIKKDT-LPSVVTGGLSTAAFRMPDNKKTL 125 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 ++IE G PL PSAN SG+ S T H+ + +I IID G ++IG+EST++++ Sbjct: 126 EVIELSGVPLVGPSANTSGKPSPTTADHVF-HDLQGKITGIIDDGATRIGVESTVLDLSD 184 Query: 186 EKKV-RILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRL--- 238 + ILRPG + E ++ I + ++ V E TP++PGM HY+P + V + Sbjct: 185 PTAMPMILRPGAVTKEQIEAVIESPVAIDQHLVKENETPKAPGMKYKHYSPDTCVLMVRE 244 Query: 239 ----RAIHVNPREALIRFGNVPIKNIENAI----ISLNLSKTGKLKEAAFNLFNYMKIAD 290 A+ + IR G + I + + ++ + ++ AA LF ++ D Sbjct: 245 GDWSTAVQW-AKNKKIRVGVIASPEISDQVRTDTAAVYMYNDNSVEAAAKGLFAGLRGLD 303 Query: 291 DS--GASSIAFSSIPNHGLGIAINNRLERAAA 320 + G I P GLG A NRL++AA Sbjct: 304 EPTLGLDLIFVQVYPETGLGNAYMNRLKKAAG 335 >gi|56965628|ref|YP_177362.1| translation factor SUA5 [Bacillus clausii KSM-K16] gi|56911874|dbj|BAD66401.1| translation factor SUA5 [Bacillus clausii KSM-K16] Length = 342 Score = 157 bits (396), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 112/330 (33%), Positives = 180/330 (54%), Gaps = 14/330 (4%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 I S + +++A ++ IA PTETVYGL ++ + A+ +++ K RP+ NPLI Sbjct: 15 IDSDKQTEMIQEAALWIKQNKLIAFPTETVYGLGANALSYEAVAQIFAAKGRPSDNPLIV 74 Query: 63 HVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 H+ D S + K PL+ + L FWPG LTL+L+ + I TA L T R+P Sbjct: 75 HIGDSSQLDKLVKSIPLNANKLMAAFWPGALTLILE--AKEAIAENVTAGLSTVGVRMPS 132 Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 KL++ G P+A PSAN SG+ S T H++ + + +I I+DGG + IGLEST+ Sbjct: 133 HPVALKLLQECGLPVAAPSANMSGRPSPTTAAHVI-ADLDGKIDGIVDGGSTGIGLESTV 191 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCVDET-STPQSPGMLKSHYAPRSQVRL 238 ++V + + RPGG+ +E ++ I ++++ ++ S P+SPGM +HYAP ++V L Sbjct: 192 LDV-SKPTPMLYRPGGVSVEEIEAVIGKIDIDPALETADSAPKSPGMKYTHYAPNAEVIL 250 Query: 239 ----RAIHVNPREALIRFGNVPI-KNIENAIISLNLSKTGK-LKEAAFNLFNYMKIADDS 292 +IH EA V + A ++ + G+ L+ A L+ ++ D+ Sbjct: 251 VDSDDSIHHLVAEAKKEGRKVAVFATTGTADYKADIVRRGESLEHTAHILYGVLRDFDEQ 310 Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAAPR 322 GA I ++P G+G AI NRLE+AA + Sbjct: 311 GADIIYVKTVPTEGVGRAIMNRLEKAAGGK 340 >gi|94971118|ref|YP_593166.1| translation factor SUA5 [Candidatus Koribacter versatilis Ellin345] gi|94553168|gb|ABF43092.1| translation factor SUA5 [Candidatus Koribacter versatilis Ellin345] Length = 321 Score = 157 bits (396), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 110/325 (33%), Positives = 167/325 (51%), Gaps = 18/325 (5%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 +TD ++ A L AG ++ PTETVYGL ++ + A+ R+Y K RPA +PLI HV Sbjct: 1 MTDPAEIQAAARLLKAGRLVSFPTETVYGLGANALDAEAVARIYAAKGRPATSPLIVHVD 60 Query: 66 DISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123 + M K + P + LA+ FWPGPLTLVL + P+ A L T R+P Sbjct: 61 SVEMAKSLVTAWPDAADALARAFWPGPLTLVLPARDV--VPPIVRAGLPTVGVRMPDHPL 118 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + LI G PLA PSANR QIS T +H+ S+ + +++DGG +G+EST++++ Sbjct: 119 AQALIRAAGVPLAAPSANRFTQISPTTAEHV-RRSLGDSVEMVLDGGPCAVGIESTVLSL 177 Query: 184 QCEKKVRILRPGGL---EIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 + V +LRPGG+ +IE + I E E + P SPGM HY+PR+++ L Sbjct: 178 AGPRAV-LLRPGGVTRAQIEAVIGPIGDADE--APEGAHP-SPGMHPRHYSPRTRLLLVK 233 Query: 241 IHVNPREA---LIRFGNVPIKNIENAIISLNLS---KTGKLKEAAFNLFNYMKIADDSGA 294 PR+ + +G + NL+ ++ A L++ + ADD G Sbjct: 234 DGEVPRDGRGIYLSYGRKSPPYAARRMGHPNLTVVEMPASAEKYAARLYDELHRADDGGF 293 Query: 295 SSIAFSSIPNHGLGIAINNRLERAA 319 IA +P + +R++RAA Sbjct: 294 DWIAVEQVPETPEWEGVRDRVKRAA 318 >gi|126459742|ref|YP_001056020.1| translation factor SUA5 [Pyrobaculum calidifontis JCM 11548] gi|126249463|gb|ABO08554.1| translation factor SUA5 [Pyrobaculum calidifontis JCM 11548] Length = 342 Score = 157 bits (396), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 109/331 (32%), Positives = 170/331 (51%), Gaps = 20/331 (6%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + +++A E L G +A PTETVYGL + + R+++++K+RP NPLI HV + Sbjct: 11 DPDVVKRAAEVLRRGGVVAAPTETVYGLFAHAYSEAGCRKVFQVKRRPMDNPLIVHVDSV 70 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 M + A + P + + WPGP+T+V+ S + TA L T R P Sbjct: 71 EMAETVAYIPPELRDILRRVWPGPITVVVK--SRGVLPRCVTAGLDTVAVRAPAHPIPLA 128 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 +I G P+A PSANR+G+ S T +H+L + E+ LI+DGG + G+ESTIV+V Sbjct: 129 IIRELGAPIAGPSANRAGRPSPTTAEHVL-EDLGDEVDLIVDGGPTFFGVESTIVDVTRT 187 Query: 187 KKVRILRPGGLEIETLKRAIS-VE---LEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242 V +LRPG +E L++ VE + + E +PGM HYAP + L +H Sbjct: 188 PPV-LLRPGPFTVEELEKFFGRVEVPPVARGLAEADVALAPGMKYRHYAPETP--LVIVH 244 Query: 243 VNPREAL-------IRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 + EA+ +R + + A ++ L G L EAA NL++ ++ D G Sbjct: 245 FDLEEAVKWLEARGLRVAVLCVGECPKAKRTIPLG--GDLYEAAKNLYDALRQLDKLGVD 302 Query: 296 SIAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326 ++ G+G+AI NRL +A+ R + Sbjct: 303 IGVVPAVEERGIGLAIMNRLRKASGHREARR 333 >gi|229076540|ref|ZP_04209500.1| hypothetical protein bcere0024_49790 [Bacillus cereus Rock4-18] gi|229099758|ref|ZP_04230683.1| hypothetical protein bcere0020_49760 [Bacillus cereus Rock3-29] gi|228683647|gb|EEL37600.1| hypothetical protein bcere0020_49760 [Bacillus cereus Rock3-29] gi|228706573|gb|EEL58786.1| hypothetical protein bcere0024_49790 [Bacillus cereus Rock4-18] Length = 342 Score = 157 bits (396), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 113/327 (34%), Positives = 169/327 (51%), Gaps = 25/327 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++A L +A PTETVYGL ++ N AI +++E K RP+ NPLI H+ S + Sbjct: 17 LQEAARLLRENEAVAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLD 76 Query: 72 KHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + + P++ L + FWPGPLT++L I TA L T R+P LIE Sbjct: 77 GIVNEIPPVAEKLMEHFWPGPLTIILP--RKEGISEKVTAGLNTVGVRMPDHPVALALIE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+A PSANRSG+ S T H+ + +I I+DGG + +G+EST+++ E Sbjct: 135 EANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVIDCTSEIPT 193 Query: 190 RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 ILRPGG+ E L+ I +V L+ + DE P+SPGM +HYAP++ + +I RE Sbjct: 194 -ILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPL---SIVEGSRE 249 Query: 248 ALIRFGN--------------VPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293 + R + +++ +A + L+ L A L++ ++ D S Sbjct: 250 FIQRLVDKKKDEGFKVGVLTTEEYQHVYSADVVLSCGMRSDLASVATKLYDVLRTFDASE 309 Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAA 320 I S PN G+G AI NRL +AA Sbjct: 310 VDVIFSESFPNDGIGNAIMNRLTKAAG 336 >gi|229118821|ref|ZP_04248170.1| hypothetical protein bcere0017_50860 [Bacillus cereus Rock1-3] gi|228664622|gb|EEL20115.1| hypothetical protein bcere0017_50860 [Bacillus cereus Rock1-3] Length = 342 Score = 157 bits (396), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 113/327 (34%), Positives = 169/327 (51%), Gaps = 25/327 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++A L +A PTETVYGL ++ N AI +++E K RP+ NPLI H+ S + Sbjct: 17 LQEAARLLRENEAVAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLD 76 Query: 72 KHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + + P++ L + FWPGPLT++L I TA L T R+P LIE Sbjct: 77 GIVNEIPPVAEKLMEHFWPGPLTIILP--RKEGISEKVTAGLNTVGVRMPDHPVALALIE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+A PSANRSG+ S T H+ + +I I+DGG + +G+EST+++ E Sbjct: 135 EANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVIDCTSEIPT 193 Query: 190 RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 ILRPGG+ E L+ I +V L+ + DE P+SPGM +HYAP++ + +I RE Sbjct: 194 -ILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPL---SIVEGSRE 249 Query: 248 ALIRFGN--------------VPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293 + R + +++ +A + L+ L A L++ ++ D S Sbjct: 250 FIQRLVDKKKDEGFKVGVLTTEEYQHVYSADVVLSCGMRSDLASVATKLYDVLRTFDASE 309 Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAA 320 I S PN G+G AI NRL +AA Sbjct: 310 VDVIFSESFPNDGIGNAIMNRLTKAAG 336 >gi|257877103|ref|ZP_05656756.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus casseliflavus EC20] gi|257811269|gb|EEV40089.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus casseliflavus EC20] Length = 342 Score = 157 bits (396), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 115/344 (33%), Positives = 178/344 (51%), Gaps = 35/344 (10%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I D L +A L G +A PTETVYGL + PTA+ ++Y++K RP+ NPLI H++ Sbjct: 5 IFDQTQLNEAAAILAEGGLVAFPTETVYGLGASALLPTAVAQVYQVKGRPSDNPLIVHIA 64 Query: 66 DISMVK-----KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 + ++ KH P + L + FWPGPLTL+ + + + + T L TA FR+P Sbjct: 65 EPEQLEPFVDNKH----PFADKLMETFWPGPLTLIFSIKKDS-LPSIVTGGLSTAAFRMP 119 Query: 121 CGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 T LI+ PL PSAN SG+ S T+ H+ + +I I+D G+++IG+EST Sbjct: 120 NNTKTLALIKQAQQPLVGPSANTSGKPSPTSAAHV-QHDLAGKIAGILDDGVTQIGVEST 178 Query: 180 IVNVQCEKKVR-ILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQ 235 ++++ ILRPG + E L+ + ++ ++ V E+ P++PGM HYAP + Sbjct: 179 VLDLSDPMAPPIILRPGAISKEQLEAVLQTKVLVDQHLVTESEAPKAPGMKYKHYAPNTN 238 Query: 236 VRLRAIHVNP------REALIRFGNVPIKNI------ENAIISLNLSKTGKLKEAAFNLF 283 V + P +E + G + I E A I L + ++ A LF Sbjct: 239 VMMVNDQDWPAAMAWAKEQQFKVGVLAGPTIAEQVRFEAAAIYLFFDDS--VEAATKGLF 296 Query: 284 NYMKIADDSGAS-SIAFS-SIPNHGLGIAINNRLERAAAPRNQS 325 ++ D+S A + F+ + P GLG A NRL++AA NQS Sbjct: 297 AGLRALDESIAELDVLFAPTFPESGLGAAYMNRLKKAA---NQS 337 >gi|257885491|ref|ZP_05665144.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 1,231,501] gi|257821347|gb|EEV48477.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 1,231,501] Length = 331 Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 109/328 (33%), Positives = 174/328 (53%), Gaps = 22/328 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E L AG +A PTETVYGL ++ P A+++++ +K RP NPLI HV+ VK Sbjct: 1 MQEAAEALKAGELVAFPTETVYGLGANALLPNAVKKVFSVKGRPQDNPLIVHVASFEQVK 60 Query: 72 KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 ++ + P + + K FWPGPLTL+ + T + + T L TA FR+P T ++I+ Sbjct: 61 EYVDNFHPAAEKIVKNFWPGPLTLIFKIKKDT-LPSVVTGGLSTAAFRMPDNKKTLEVIK 119 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL PSAN SG+ S T H+ + +I IID G ++IG+EST++++ + Sbjct: 120 LSGVPLVGPSANTSGKPSPTTADHVY-HDLQGKITGIIDDGATRIGVESTVLDLSDPTAM 178 Query: 190 -RILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRL------- 238 ILRPG + E ++ I + ++ V E TP++PGM HY+P ++V + Sbjct: 179 PMILRPGAVTKEQIEAVIESPVAIDQHLVKENETPKAPGMKYKHYSPDTRVLMVRDGDWS 238 Query: 239 RAIHVNPREALIRFGNVPIKNIENAI----ISLNLSKTGKLKEAAFNLFNYMKIADDS-- 292 A+ + IR G + I + + ++ + ++ AA LF ++ D+ Sbjct: 239 TAVQW-AKNKKIRAGVIASPEIADQVRTDTAAVYMYNDNSVEAAAKGLFAGLRGLDEPTL 297 Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAA 320 G I P GLG A NRL++AA Sbjct: 298 GLDLIFVQVYPETGLGNAYMNRLKKAAG 325 >gi|282892124|ref|ZP_06300599.1| hypothetical protein pah_c207o060 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281498019|gb|EFB40363.1| hypothetical protein pah_c207o060 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 314 Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 115/315 (36%), Positives = 168/315 (53%), Gaps = 14/315 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L KACE L G +A+PTETVYGLA R+P AI ++ +K RPA NPLI HVS + Sbjct: 5 LEKACELLSQGEVVALPTETVYGLAASLRHPNAIENIFALKNRPANNPLIIHVSHYEQIY 64 Query: 72 KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 +A S+ P + LA+ FWPGPLTLVL + T I A+L TA FR+P ++ +I+ Sbjct: 65 PYAQSIPPYFVKLAQHFWPGPLTLVLPIQPAT-IPNTVRADLTTAAFRIPQHPLSQAVIK 123 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G P+ +PSAN SG+ S T + P ++DGG GLESTI+ + + Sbjct: 124 QVG-PVVMPSANLSGRPSATQASRV-EEDFGTAFP-VLDGGGCTCGLESTILYF-IDNQW 179 Query: 190 RILRPGGLEIETLKRAISVELEYCVDET--STPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 I+R G L E + + + ET + P PG L HYAP++++ L +P E Sbjct: 180 EIVRLGSLAPEQFQPILGYQ-PVIRQETNQAKPLCPGQLYRHYAPQAKLLLDN-KASP-E 236 Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF-SSIPNHG 306 ++ + N I +L K+ ++ A NL++ ++ DD+ I S P G Sbjct: 237 SIGYVLGFSDRQYPNCKI-FSLGKSDNPEQVAENLYDTLRSLDDAKIQCIWVDSDFPQKG 295 Query: 307 LGIAINNRLERAAAP 321 L + I+ RL+RA+ P Sbjct: 296 LWLTISERLKRASYP 310 >gi|257867025|ref|ZP_05646678.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus casseliflavus EC30] gi|257873360|ref|ZP_05653013.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus casseliflavus EC10] gi|257801081|gb|EEV30011.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus casseliflavus EC30] gi|257807524|gb|EEV36346.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus casseliflavus EC10] Length = 342 Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 115/344 (33%), Positives = 178/344 (51%), Gaps = 35/344 (10%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I D L +A L G +A PTETVYGL + PTA+ ++Y++K RP+ NPLI H++ Sbjct: 5 IFDQTQLNEAAAILAEGGLVAFPTETVYGLGASALLPTAVAQVYQVKGRPSDNPLIVHIA 64 Query: 66 DISMVK-----KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 + ++ KH P + L + FWPGPLTL+ + + + + T L TA FR+P Sbjct: 65 EPEQLEPFVDNKH----PFADKLMETFWPGPLTLIFSIKKDS-LPSIVTGGLSTAAFRMP 119 Query: 121 CGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 T LI+ PL PSAN SG+ S T+ H+ + +I I+D G+++IG+EST Sbjct: 120 NNTKTLALIKQAQQPLVGPSANTSGKPSPTSAAHV-QHDLAGKIAGILDDGVTQIGVEST 178 Query: 180 IVNVQCEKKVR-ILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQ 235 ++++ ILRPG + E L+ + ++ ++ V E+ P++PGM HYAP + Sbjct: 179 VLDLSDPTAPPIILRPGAISKEQLEAVLQTKVLVDQHLVTESEAPKAPGMKYKHYAPNTN 238 Query: 236 VRLRAIHVNP------REALIRFGNVPIKNI------ENAIISLNLSKTGKLKEAAFNLF 283 V + P +E + G + I E A I L + ++ A LF Sbjct: 239 VLMVNDQDWPAAMAWAKEQQFKVGVLAGPTIAEQVRFEAAAIYLFFDDS--VEAATKGLF 296 Query: 284 NYMKIADDSGAS-SIAFS-SIPNHGLGIAINNRLERAAAPRNQS 325 ++ D+S A + F+ + P GLG A NRL++AA NQS Sbjct: 297 AGLRALDESIAELDVLFAPTFPESGLGAAYMNRLKKAA---NQS 337 >gi|229014495|ref|ZP_04171613.1| hypothetical protein bmyco0001_48980 [Bacillus mycoides DSM 2048] gi|229064976|ref|ZP_04200274.1| hypothetical protein bcere0026_50330 [Bacillus cereus AH603] gi|229136144|ref|ZP_04264897.1| hypothetical protein bcere0014_50170 [Bacillus cereus BDRD-ST196] gi|229170033|ref|ZP_04297725.1| hypothetical protein bcere0007_49700 [Bacillus cereus AH621] gi|228613458|gb|EEK70591.1| hypothetical protein bcere0007_49700 [Bacillus cereus AH621] gi|228647303|gb|EEL03385.1| hypothetical protein bcere0014_50170 [Bacillus cereus BDRD-ST196] gi|228716277|gb|EEL67989.1| hypothetical protein bcere0026_50330 [Bacillus cereus AH603] gi|228746845|gb|EEL96730.1| hypothetical protein bmyco0001_48980 [Bacillus mycoides DSM 2048] Length = 346 Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 112/326 (34%), Positives = 170/326 (52%), Gaps = 23/326 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++A L +A PTETVYGL ++ + AI +++E K RP+ NPLI H+ S + Sbjct: 21 LKEAARLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQLD 80 Query: 72 KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P++ L + FWPGPLT++L I TA L T R+P LIE Sbjct: 81 GIVREIPPVAEKLMEHFWPGPLTIILP--RKKGISERVTAGLNTVGVRMPDHPVALALIE 138 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+A PSANRSG+ S T H+ + +I I+DGG + +G+EST+++ C +V Sbjct: 139 EANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVID--CTSEV 195 Query: 190 -RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPRSQVRL-------- 238 ILRPGG+ E L+ I +V L+ + DE P+SPGM +HYAP++ + + Sbjct: 196 PTILRPGGITKEQLEAVIGNVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255 Query: 239 -RAIHVNPREALIRFG---NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGA 294 R + +E + G +++ +A + L+ L A L++ ++ D S Sbjct: 256 QRIVDEKKKEGF-KVGVLTTEEYQHVYSADVVLSCGVRSDLASVATKLYDVLRTFDASEV 314 Query: 295 SSIAFSSIPNHGLGIAINNRLERAAA 320 I S PN G+G AI NRL +AA Sbjct: 315 DVIFSESFPNEGIGNAIMNRLTKAAG 340 >gi|116494653|ref|YP_806387.1| putative translation factor (SUA5) [Lactobacillus casei ATCC 334] gi|116104803|gb|ABJ69945.1| translation factor SUA5 [Lactobacillus casei ATCC 334] Length = 333 Score = 156 bits (395), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 91/227 (40%), Positives = 134/227 (59%), Gaps = 8/227 (3%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 +A L G +A PTETVYGL D+ N TA+ ++Y K RP+ NPLI V+D MV ++ Sbjct: 12 EAAAALKRGELVAFPTETVYGLGADATNVTAVGKVYAAKGRPSDNPLIVTVADADMVGQY 71 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYG 132 A++ PL+ L + FWPGPLT++L++L + T L+TA FR P T+KLI T G Sbjct: 72 ATITPLAAKLMQAFWPGPLTIILNILPGR-LSMKVTGGLQTAAFRNPDNALTRKLIATAG 130 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192 P+ PSAN SG+ S T H+L + +I ++D G +++G+ES I+++ IL Sbjct: 131 VPIVGPSANTSGKPSPTTADHVL-HDLDGKIAGVLDDGPTQVGVESAIIDLTVTPPA-IL 188 Query: 193 RPGGL---EIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQV 236 RPG + E+E L + + V + P++PGM HYAP +QV Sbjct: 189 RPGAIGPDELEPLIGHVDTAAHH-VGQNEAPKAPGMKYKHYAPAAQV 234 >gi|312142774|ref|YP_003994220.1| Sua5/YciO/YrdC/YwlC family protein [Halanaerobium sp. 'sapolanicus'] gi|311903425|gb|ADQ13866.1| Sua5/YciO/YrdC/YwlC family protein [Halanaerobium sp. 'sapolanicus'] Length = 350 Score = 156 bits (395), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 118/345 (34%), Positives = 175/345 (50%), Gaps = 30/345 (8%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 I + D A+ KA E L G +AIPTETVYGLA D+ NP A++R++E K RP NPLI Sbjct: 8 IKANNDDQAVEKAAELLHKGELVAIPTETVYGLAADALNPEAVKRIFEAKGRPQDNPLII 67 Query: 63 HVSDISMVKK--HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLST-ANLKTACFRV 119 H+ ++K V + L +WPGPLTL+ + + P T A L T R+ Sbjct: 68 HIGAQKDLEKLIAEKVSKRAQKLIDKYWPGPLTLI---FKKSSLVPAETSAGLDTVAVRM 124 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T KL++ G LA PSAN SG S T +H+ + K IPLI+DGG ++G+ES Sbjct: 125 PSHPVTIKLLQKSGLVLAAPSANTSGYPSPTRAEHVYADLKTK-IPLILDGGSCEVGVES 183 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQ---SPGMLKSHYAPRSQ 235 T++++ +K+ +LRPGG+ E L + EL+ + + Q SPGM HYAP+ Sbjct: 184 TVIDL-SQKEAVVLRPGGISREELAEFLGEELKLNNNLEKSTQGVISPGMKYRHYAPQKN 242 Query: 236 VRLRAIHVNPREALIRFGNVPIKNI-------------ENAIISLNLSKTGKLKEAAFNL 282 + + +P + + F K I E+ + + K E A L Sbjct: 243 LYI----FDPVKKDLLFKKAEQKKIALIISRQTELGQKEDQLKVIRAFDREKPAELARKL 298 Query: 283 FNYMKIAD-DSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326 F ++ D D I + GLG + NR+ +AAA ++++Q Sbjct: 299 FALLRELDSDPEVEEIYIEELKEEGLGETLMNRIYKAAAAKDEAQ 343 >gi|163943013|ref|YP_001647897.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus weihenstephanensis KBAB4] gi|163865210|gb|ABY46269.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus weihenstephanensis KBAB4] Length = 346 Score = 156 bits (395), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 112/326 (34%), Positives = 170/326 (52%), Gaps = 23/326 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++A L +A PTETVYGL ++ + AI +++E K RP+ NPLI H+ S + Sbjct: 21 LKEAARLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQLD 80 Query: 72 KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P++ L + FWPGPLT++L I TA L T R+P LIE Sbjct: 81 GIVREIPPVAEKLMEHFWPGPLTIILP--RKKGISERVTAGLNTVGVRMPDHPVALALIE 138 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+A PSANRSG+ S T H+ + +I I+DGG + +G+EST+++ C +V Sbjct: 139 EANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVID--CTSEV 195 Query: 190 -RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPRSQVRL-------- 238 ILRPGG+ E L+ I +V L+ + DE P+SPGM +HYAP++ + + Sbjct: 196 PTILRPGGITKEQLEAVIGNVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255 Query: 239 -RAIHVNPREALIRFGNVPIKNIE---NAIISLNLSKTGKLKEAAFNLFNYMKIADDSGA 294 R + +E + G + + + +A + L+ L A L++ ++ D S Sbjct: 256 QRIVDEKKKEGF-KVGVLTTEEYQRVYSADVVLSCGVRSDLASVATKLYDVLRTFDASEV 314 Query: 295 SSIAFSSIPNHGLGIAINNRLERAAA 320 I S PN G+G AI NRL +AA Sbjct: 315 DVIFSESFPNEGIGNAIMNRLTKAAG 340 >gi|319650889|ref|ZP_08005026.1| Sua5/yciO/yrdC/ywlC family protein [Bacillus sp. 2_A_57_CT2] gi|317397487|gb|EFV78188.1| Sua5/yciO/yrdC/ywlC family protein [Bacillus sp. 2_A_57_CT2] Length = 347 Score = 156 bits (395), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 109/324 (33%), Positives = 164/324 (50%), Gaps = 18/324 (5%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 +A + L +A PTETVYGL ++ N A+R+++E K RP+ NPLI H++D + Sbjct: 23 QAADLLKKNEVVAFPTETVYGLGGNAENDEAVRKIFEAKGRPSDNPLIIHIADKGKLDAF 82 Query: 74 ASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY 131 + P + L FWPGPLTL+ +L H +TA+L T R+P L+ Sbjct: 83 VTEIPQNAQALMDRFWPGPLTLIFNLKEGVLSH-YATADLSTVAVRMPDHPVALALLNKT 141 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 G P+A PSANRSG+ S T H+ + I ++DGG + +G+EST+V+ + V I Sbjct: 142 GLPIAAPSANRSGRPSPTTADHVW-EDLNGRIAGLVDGGPTGVGVESTVVDCTGDVPV-I 199 Query: 192 LRPGGLEIETLKRAIS--VELEYCVDETSTPQSPGMLKSHYAPRSQVRL---------RA 240 LRPGG+ E L+ A+ + DE+ P+SPGM HYAP + + L Sbjct: 200 LRPGGITREQLEEAVGEIIVDPALADESQAPKSPGMKYRHYAPDAPLYLVEGTKEDIQYF 259 Query: 241 IHVNPREALIRFGNVPIKNIE--NAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIA 298 + +E L +N+E A + KL+ A +L+ ++ + + A I Sbjct: 260 VEDKKKEGLSVGVLTTSENLEFYRADFIYACGQRDKLETVASSLYEALRYFNTTNADIIF 319 Query: 299 FSSIPNHGLGIAINNRLERAAAPR 322 P G+G AI NRL +AA R Sbjct: 320 CEMFPGEGVGHAIMNRLMKAAGHR 343 >gi|311070214|ref|YP_003975137.1| putative ribosome maturation factor; RNA binding protein [Bacillus atrophaeus 1942] gi|310870731|gb|ADP34206.1| putative ribosome maturation factor; RNA binding protein [Bacillus atrophaeus 1942] Length = 346 Score = 156 bits (395), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 111/329 (33%), Positives = 173/329 (52%), Gaps = 18/329 (5%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 T + +A + L +A PTETVYGL ++ + A+ ++YE K RP+ NPLI H++D Sbjct: 16 TKDPQIAQAADLLRQNEVVAFPTETVYGLGANAESTEAVMKIYEAKGRPSDNPLIVHIAD 75 Query: 67 ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 IS + + A + L K FWPG LTLVL + P TA L+T R+P Sbjct: 76 ISQLDRIAGPASEKAKKLMKQFWPGALTLVLPCKPGV-LSPRVTAGLETVAVRMPDHPLA 134 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 LI + G P+A PSAN SG+ S T +H+ + I IIDGG + +G+EST+++ Sbjct: 135 LALIRSSGLPIAAPSANLSGKPSPTRAEHV-EHDLNGRIAGIIDGGATGLGVESTVISCS 193 Query: 185 CEKKVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPR--------S 234 + V +LRPGG+ E ++ I L + ++ TP SPGM +HYAP S Sbjct: 194 EDMPV-LLRPGGITKEQIEEEIGEVLVDKGLTEKNETPISPGMKYTHYAPSAPLAVTEGS 252 Query: 235 QVRLRAIHVNPREALIRFGNVPIK---NIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291 R++A+ +++ R G + + +I A + + +L+ A +L++ ++ D+ Sbjct: 253 AERIQALVREYQQSGKRVGVLTTEERADIYEADFVKSCGRRDQLETVAASLYDALRSFDE 312 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320 I + PN G+G AI NRL +AA Sbjct: 313 VKVDFIIAEAFPNTGVGHAIMNRLMKAAG 341 >gi|332971797|gb|EGK10745.1| Sua5/YciO/YrdC/YwlC family protein [Desmospora sp. 8437] Length = 361 Score = 156 bits (394), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 116/348 (33%), Positives = 172/348 (49%), Gaps = 34/348 (9%) Query: 1 MQIMSITDSN---ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 QI TD + +R+A L G +A PTETVYGL D+ +P A+ +Y K RP+ Sbjct: 15 WQIDGATDLDQNPVIREAAALLREGHLVAFPTETVYGLGADATDPDAVASIYRAKGRPSD 74 Query: 58 NPLICHVSDISMVKKHASV--DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115 NPLI H++D + + +P L LA+ FWPGPLTL+L ++ P TA L T Sbjct: 75 NPLIVHLADEQGLSEWVREIPEPGRL-LARRFWPGPLTLILP--HRGNLAPQVTAGLPTV 131 Query: 116 CFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174 R+P L++ G P+A PSANRSG+ S T H+ + + I I+DGG++ + Sbjct: 132 GVRIPSHPVALALLKNCGLPVAAPSANRSGKPSPTRAGHVW-TDLGGRIDAILDGGVTGV 190 Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-----ETSTPQSPGMLKSH 229 G+EST+V+V V +LRPGG+ +E L+ + E VD E +P+SPGM H Sbjct: 191 GVESTVVDVTVNPPV-LLRPGGVTLEMLREVVR---EVRVDPGLREEWESPRSPGMKYRH 246 Query: 230 YAP---------RSQVRLRAIHVNPREALIRFGNVPI------KNIENAIISLNLSKTGK 274 YAP + ++ I EA+ I ++ A + + Sbjct: 247 YAPGGEMWVITGEGEAQVSRIQRMADEAMQSGKKTGILCTEEHASLYRADWIVVCGTRSR 306 Query: 275 LKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 A L+ ++ D+ GA IA P G+ ++ NRL +AA R Sbjct: 307 PDTIARELYGALRRFDEVGAQWIAAEGFPPRGVLHSVMNRLSKAAEGR 354 >gi|124515366|gb|EAY56876.1| SUA5/yciO/yrdC family [Leptospirillum rubarum] gi|206601667|gb|EDZ38150.1| SUA5/yciO/yrdC family [Leptospirillum sp. Group II '5-way CG'] Length = 339 Score = 156 bits (394), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 110/324 (33%), Positives = 161/324 (49%), Gaps = 25/324 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +R+A E L G + IPTETVYGL D+ NP A+RR++ IK RP +PLI H+ I ++ Sbjct: 6 IRQAVEHLKQGRTVVIPTETVYGLGADASNPEAVRRIFAIKGRPPGHPLIVHIEKIDCLE 65 Query: 72 KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 A ++ P+++ LA+ FWPGPLTLVL ++ P T +T RVP L+ Sbjct: 66 SWAKTIPPVAVRLAERFWPGPLTLVLP--RRREVLPEVTGGQETVALRVPSHPVITALLR 123 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 +G +A PSANR G++S T+ + + +I++GG GLESTI+ Q V Sbjct: 124 AFGGGIAAPSANRFGRLSPTSARDVY-EEFKDAAGMILEGGPCSFGLESTILGFQDGHPV 182 Query: 190 RILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREAL 249 +LRPG L TL+ + V + +P+ PG SHY P + + L P E L Sbjct: 183 -LLRPGALSTGTLEEFLGVRILRSAAGADSPRVPGSSLSHYQPDTPLELL-----PGEDL 236 Query: 250 IR-----------FGNVPIKNIENAIISLNLSKTGKLKEA-AFN--LFNYMKIADDSGAS 295 +R G + + E L+ +EA A+ L+ + D +G Sbjct: 237 VRRSLSLSAQGRKVGILYRRAEEERFHGDGLTPVPMPREAEAYGQALYAVLHFFDRAGVD 296 Query: 296 SIAFSSIPNHGLGIAINNRLERAA 319 I P G A+N+RL RAA Sbjct: 297 RILVEFPPQTGEWEAVNDRLGRAA 320 >gi|227535364|ref|ZP_03965413.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227186960|gb|EEI67027.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 333 Score = 156 bits (394), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 91/227 (40%), Positives = 134/227 (59%), Gaps = 8/227 (3%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 +A L G +A PTETVYGL D+ N TA+ ++Y K RP+ NPLI V+D MV ++ Sbjct: 12 EAAAALKRGELVAFPTETVYGLGADATNVTAVGKVYAAKGRPSDNPLIVTVADADMVGQY 71 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYG 132 A++ PL+ L + FWPGPLT++L++L + T L+TA FR P T+KLI T G Sbjct: 72 ATITPLAAKLMEAFWPGPLTIILNILPGR-LSMKVTGGLQTAAFRNPDNALTRKLIATAG 130 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192 P+ PSAN SG+ S T H+L + +I ++D G +++G+ES I+++ IL Sbjct: 131 VPIVGPSANTSGKPSPTTADHVL-HDLDGKIAGVLDDGPTQVGVESAIIDLTVTPPA-IL 188 Query: 193 RPGGL---EIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQV 236 RPG + E+E L + + V + P++PGM HYAP +QV Sbjct: 189 RPGAIGPDELEPLIGHVDTAAHH-VGQNEAPKAPGMKYKHYAPAAQV 234 >gi|187933769|ref|YP_001884698.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum B str. Eklund 17B] gi|187721922|gb|ACD23143.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum B str. Eklund 17B] Length = 349 Score = 156 bits (394), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 112/334 (33%), Positives = 175/334 (52%), Gaps = 25/334 (7%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D +++A + + G +A PTETVYGL D+ N A+++++ K RP NPLI HV+ Sbjct: 14 DEEKMKEAAQIIKDGGIVAFPTETVYGLGSDALNEDAVKKIFIAKGRPQDNPLIVHVASK 73 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 ++ + ++ L +WPGPLTL+L S I +++ANL T R+P K Sbjct: 74 NIQSLVEDIPDIAQRLIDKYWPGPLTLILKKKSI--IPDMTSANLDTIGIRMPNNEIALK 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LIE +A PSAN SG+ S T+V+ + + + I+ G S IGLESTI++ Sbjct: 132 LIEMSNTVIAAPSANISGRPSPTDVERCI-DDLSGRVDCIVGGKKSDIGLESTILDCTVN 190 Query: 187 KKVRILRPGGLEIETLKRAIS-VELEYCVDETST----PQSPGMLKSHYAPRSQVRL--- 238 + +LRPGG+ +E LK + +E++ + + ST P++PGM HYAP+++V++ Sbjct: 191 PPI-VLRPGGITLEMLKEIDNRIEIDGAIMKKSTGDLKPKAPGMKYRHYAPKAKVKIISG 249 Query: 239 -RAIHVNPREALIRF-----GNVPIKNIE------NAIISLNLSKTGKLKEAAFNLFNYM 286 R + + ++ + V I I+ N I + L L A NLF + Sbjct: 250 ERKKTIEKIKEIVDYYIDNNKKVCILTIQENEKEYNKGIKVVLGSKENLLMVAQNLFESL 309 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + DD GA I + G+GIAI NRL +AA Sbjct: 310 RKCDDLGADVILAEAYEEKGVGIAIMNRLNKAAG 343 >gi|325568365|ref|ZP_08144732.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus casseliflavus ATCC 12755] gi|325158134|gb|EGC70287.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus casseliflavus ATCC 12755] Length = 342 Score = 156 bits (394), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 114/344 (33%), Positives = 179/344 (52%), Gaps = 35/344 (10%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I D + L +A L G +A PTETVYGL + P A+ ++Y++K RP+ NPLI H++ Sbjct: 5 IFDQSQLNEAAAILAEGGLVAFPTETVYGLGASALLPNAVAQVYQVKGRPSDNPLIVHIA 64 Query: 66 DISMVK-----KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 + ++ KH P + L + FWPGPLTL+ + + + + T L TA FR+P Sbjct: 65 EPEQLEPFVDNKH----PFADKLMETFWPGPLTLIFSIKKDS-LPSIVTGGLSTAAFRMP 119 Query: 121 CGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 T LI+ PL PSAN SG+ S T+ H+ + +I I+D G+++IG+EST Sbjct: 120 NNTKTLALIKQAQQPLVGPSANTSGKPSPTSAAHV-QHDLAGKIAGILDDGVTQIGVEST 178 Query: 180 IVNVQCEKKVR-ILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQ 235 ++++ ILRPG + E L+ + ++ ++ V E+ P++PGM HYAP + Sbjct: 179 VLDLSDPTAPPIILRPGAISKEQLEAVLQTKVLVDQHLVTESEAPKAPGMKYKHYAPNTN 238 Query: 236 VRL------RAIHVNPREALIRFGNVPIKNI------ENAIISLNLSKTGKLKEAAFNLF 283 V + A +E ++ G + I E A I L + ++ A LF Sbjct: 239 VMMINDQDWSAAMAWAKEQQLKVGVLAGPTIAEQVRFEAAAIYLFFDDS--VEAATKGLF 296 Query: 284 NYMKIADDSGAS-SIAFS-SIPNHGLGIAINNRLERAAAPRNQS 325 ++ D+S A + F+ + P GLG A NRL++AA NQS Sbjct: 297 AGLRALDESIAELDVLFAPTFPESGLGAAYMNRLKKAA---NQS 337 >gi|157694091|ref|YP_001488553.1| hypothetical protein BPUM_3340 [Bacillus pumilus SAFR-032] gi|157682849|gb|ABV63993.1| hypothetical protein BPUM_3340 [Bacillus pumilus SAFR-032] Length = 351 Score = 156 bits (394), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 113/330 (34%), Positives = 173/330 (52%), Gaps = 20/330 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A L +A PTETVYGL +++ A+ ++YE K RP+ NPLI H++++ + Sbjct: 23 IEQAALLLKQNEVVAFPTETVYGLGANAKETEAVMKIYEAKGRPSDNPLIVHIAEVEQLH 82 Query: 72 KHASVD-PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + A ++ + L K FWPG LT+VL T + TA L T R+P +LI Sbjct: 83 EFAQIESERAKALMKAFWPGALTIVLPCKLGT-LSKQVTAGLSTVGVRMPDHPIALELIR 141 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 T G P+A PSANRSG+ S T H+ +S + I I+DGG + IG+EST+V+ E V Sbjct: 142 TAGLPIAAPSANRSGKPSPTQADHV-ASDLDGRIAGIVDGGSTGIGVESTVVSCVDEIPV 200 Query: 190 RILRPGGLEIETLKRAI-SVELE-YCVDETSTPQSPGMLKSHYAPRSQVRL--------- 238 ILRPGG+ E L+ + +V ++ + P SPGM +HYAP +++ L Sbjct: 201 -ILRPGGITKEALEEVVGTVSIDPGLTKKDEAPVSPGMKYTHYAPEAKMYLFHGSDEELQ 259 Query: 239 RAIHVNPREALIRFGNVPI---KNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 R I E L + G + K++ A + + K + A NL+ ++ D++ Sbjct: 260 RHIQTYQTEGL-KVGVLTTEEKKSLFAADVVFSCGWREKPETIAANLYRVLRQFDETDVD 318 Query: 296 SIAFSSIPNHGLGIAINNRLERAAAPRNQS 325 I + G+G AI NRL++AA R S Sbjct: 319 VIISETFSKQGVGSAIMNRLQKAAGGRTLS 348 >gi|191638152|ref|YP_001987318.1| Translation factor SUA5 [Lactobacillus casei BL23] gi|239631746|ref|ZP_04674777.1| translation factor SUA5 [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066211|ref|YP_003788234.1| putative translation factor [Lactobacillus casei str. Zhang] gi|190712454|emb|CAQ66460.1| Translation factor SUA5 [Lactobacillus casei BL23] gi|239526211|gb|EEQ65212.1| translation factor SUA5 [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300438618|gb|ADK18384.1| Putative translation factor (SUA5) [Lactobacillus casei str. Zhang] gi|327382182|gb|AEA53658.1| Putative translation factor (SUA5) [Lactobacillus casei LC2W] gi|327385379|gb|AEA56853.1| Putative translation factor (SUA5) [Lactobacillus casei BD-II] Length = 333 Score = 156 bits (394), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 91/227 (40%), Positives = 134/227 (59%), Gaps = 8/227 (3%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 +A L G +A PTETVYGL D+ N TA+ ++Y K RP+ NPLI V+D MV ++ Sbjct: 12 EAAAALKRGELVAFPTETVYGLGADATNVTAVGKVYAAKGRPSDNPLIVTVADAEMVGQY 71 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYG 132 A++ PL+ L + FWPGPLT++L++L + T L+TA FR P T+KLI T G Sbjct: 72 ATITPLAAKLMEAFWPGPLTIILNILPGR-LSMKVTGGLQTAAFRNPDNALTRKLIATAG 130 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192 P+ PSAN SG+ S T H+L + +I ++D G +++G+ES I+++ IL Sbjct: 131 VPIVGPSANTSGKPSPTTADHVL-HDLDGKIAGVLDDGPTQVGVESAIIDLTVTPPA-IL 188 Query: 193 RPGGL---EIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQV 236 RPG + E+E L + + V + P++PGM HYAP +QV Sbjct: 189 RPGAIGPDELEPLIGHVDTAAHH-VGQNEAPKAPGMKYKHYAPAAQV 234 >gi|259046349|ref|ZP_05736750.1| Sua5/YciO/YrdC/YwlC family protein [Granulicatella adiacens ATCC 49175] gi|259036986|gb|EEW38241.1| Sua5/YciO/YrdC/YwlC family protein [Granulicatella adiacens ATCC 49175] Length = 336 Score = 155 bits (393), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 117/337 (34%), Positives = 174/337 (51%), Gaps = 21/337 (6%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ T N L A + L G ++ PTETVYGL + + A+ +++E K RP+ NPL Sbjct: 1 METQIFTKEN-LDIAAKALQQGEIVSFPTETVYGLGAIATSQEAVLKVFEAKGRPSDNPL 59 Query: 61 ICHVSDI-SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIH-PLSTANLKTACFR 118 I H+SDI M V ++L LAK FWPGPLT++L + I+ P +A L T FR Sbjct: 60 IVHISDIQQMTSTVEEVPEIALTLAKAFWPGPLTMILK--AKPGIYAPALSAGLPTVSFR 117 Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 +P T +LI G PL PSAN S + S T V+H+ + I I+DGG S +G+E Sbjct: 118 MPNHPLTLELITKVGIPLVGPSANLSTKPSPTKVQHVF-EDMNGRIRGIVDGGSSTVGVE 176 Query: 178 STIVNVQCEKKVRILRPGGL---EIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRS 234 ST++++ E+ ILRPG + +IE++ I + E P+SPGM HYAP++ Sbjct: 177 STVIDLTNEEGPVILRPGVITKEQIESVIGPIQSSVTTKTGEREIPKSPGMKYRHYAPKT 236 Query: 235 QVRLRAIHVNPREALIRFGNVPIKNI----ENAIISL------NLSKTG-KLKEAAFNLF 283 V + V I+ K + +NAI+ + K G + + +LF Sbjct: 237 PVLVVEGAVESFTKAIQEAQNNGKTVGIMAQNAIVDAVESRVKGIYKMGTSVDDMNRSLF 296 Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + ++ D I P G+GIA NRL++AA+ Sbjct: 297 DALRTLDHLELDIILAQGAPEEGVGIAYMNRLKKAAS 333 >gi|149200145|ref|ZP_01877169.1| sua5 related protein [Lentisphaera araneosa HTCC2155] gi|149136786|gb|EDM25215.1| sua5 related protein [Lentisphaera araneosa HTCC2155] Length = 322 Score = 155 bits (393), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 113/333 (33%), Positives = 175/333 (52%), Gaps = 21/333 (6%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I T+ N ++KA E L +A TETVYGL ++ +P A ++++ KKRP +PL Sbjct: 1 MAIFRGTEEN-IKKAAEHLKNDNLVAFATETVYGLGANALSPPACEKIFKAKKRPKYDPL 59 Query: 61 ICHVSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFR 118 I H+++I + P ++L LA+ +WPGPLTLV TD+ P L T+ L T R Sbjct: 60 IVHIAEIYQLSDLVKEIPDVALDLAEAYWPGPLTLV---FKKTDLIPSLITSGLDTVAIR 116 Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 +P L+ P+A PSAN G +S T+ +H+ S + E+ +I+DGG G+E Sbjct: 117 MPAHPLALGLLSEAQIPVAAPSANPFGYLSPTSAEHVF-SQLENEVDIILDGGECDWGIE 175 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAI-SVELEYCVDETSTPQSPGMLKSHYAPRSQV 236 STIV+ + + +LR GG+ E ++R SV+ V E P +PG L SHYAP +++ Sbjct: 176 STIVDCSSGEAI-LLRQGGISAEDIRRVTGSVQFGKAVLE--RPLAPGQLASHYAPNTKL 232 Query: 237 RLRA------IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD 290 + I + + ++ G+ I+ E ++S N K A NLF+ + D Sbjct: 233 MILKSGEVPNIADSAKVGFLQMGSTSIEATEIEVLSEN---EQDFKSIAHNLFSALHRLD 289 Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAAPRN 323 G I + + L AI +RL +AAA R+ Sbjct: 290 SKGLDVIYVYELEGNDLASAIMDRLLKAAAKRS 322 >gi|288554403|ref|YP_003426338.1| sua5/yciO/yrdC/ywlC family protein [Bacillus pseudofirmus OF4] gi|288545563|gb|ADC49446.1| sua5/yciO/yrdC/ywlC family protein [Bacillus pseudofirmus OF4] Length = 346 Score = 155 bits (393), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 109/343 (31%), Positives = 169/343 (49%), Gaps = 28/343 (8%) Query: 1 MQIMSITDSNALRK----ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56 + I D + R+ A ++ G +A PTETVYGL ++ + AI +++E K RP+ Sbjct: 9 FNVDKINDEDKKREYISDAALWISEGEVVAFPTETVYGLGANALDEKAIAKIFEAKGRPS 68 Query: 57 MNPLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115 NPLI H+++ + + + + P + L + FWPGPLT++ I P TA L T Sbjct: 69 DNPLIVHIANRDQLSELVTEITPAAEKLMEAFWPGPLTIIFK--KKGPIAPNVTAGLDTV 126 Query: 116 CFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174 R+P KLI+ P+A PSAN SG+ S T H+ + I ++DGG + + Sbjct: 127 AIRMPSHPLALKLIKAANVPVAAPSANLSGKPSPTTAAHVY-HDLQGRIAGVVDGGSTGV 185 Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDET-----STPQSPGMLKSH 229 GLEST+++ + + RPGG+ IE LK + E VD + P+SPGM +H Sbjct: 186 GLESTVLDCSVHPPM-LYRPGGVTIEELKEVVG---EVAVDPSLKNTEDAPRSPGMKYTH 241 Query: 230 YAPRSQV-------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTG---KLKEAA 279 YAP+ + R++A+ RE + G + + + + G L A Sbjct: 242 YAPKGSLTLVHDVSRIQALLDEAREQGKKVGVLTTEERAAEYKADTVIACGAREDLSTVA 301 Query: 280 FNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 L+ ++ D I + PN G+G AI NRLE+AA R Sbjct: 302 AKLYEALRQFDQENVDVIYSETFPNEGVGAAIMNRLEKAAGGR 344 >gi|229551969|ref|ZP_04440694.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus rhamnosus LMS2-1] gi|229314704|gb|EEN80677.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus rhamnosus LMS2-1] Length = 340 Score = 155 bits (393), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 91/227 (40%), Positives = 134/227 (59%), Gaps = 8/227 (3%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 +A L G +A PTETVYGL D+ N TA+ ++Y K RP+ NPLI V+D +MV ++ Sbjct: 12 EAAAALKRGELVAFPTETVYGLGADATNVTAVSQVYAAKGRPSDNPLIVTVADAAMVSQY 71 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYG 132 A++ P + L FWPGPLT++L++L + T L+TA FR P T+KLI T G Sbjct: 72 ATITPDAAKLMDTFWPGPLTIILNILPGR-LSMKVTGGLQTAAFRNPDDALTRKLIATAG 130 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192 P+ PSAN SG+ S T H+L + +I ++D G +++G+ESTI+++ IL Sbjct: 131 VPIVGPSANTSGKPSPTTADHVL-HDLADKIAGVLDDGPTRVGVESTIIDLTVTPPA-IL 188 Query: 193 RPGGL---EIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQV 236 RPG + E+E L + + V + P++PGM HYAP +QV Sbjct: 189 RPGAIGPHELEPLLGPVD-SAAHHVGKNEAPKAPGMKYKHYAPAAQV 234 >gi|254520295|ref|ZP_05132351.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium sp. 7_2_43FAA] gi|226914044|gb|EEH99245.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium sp. 7_2_43FAA] Length = 349 Score = 155 bits (393), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 114/337 (33%), Positives = 173/337 (51%), Gaps = 31/337 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L++A + + G +A PTETVYGL ++ N A+ +++ K RP NPLI HVS Sbjct: 14 DIEYLKEAADIIYNGGVVAFPTETVYGLGANALNDEAVEKIFNAKGRPQDNPLIVHVSSK 73 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLST-ANLKTACFRVPCG-FTK 125 ++ V ++ L FWPGPLT++ L+ +I P T ANL T R+P Sbjct: 74 NINNLVKDVPEIAQKLINRFWPGPLTII---LNKKEIIPNRTSANLDTIGIRMPNDKIAL 130 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 KLIE G P+A PSAN SG+ S T V+ + + I I+ G S +G+ESTIV+ Sbjct: 131 KLIELSGCPIAAPSANISGRPSPTEVERCV-EDLSGRIDYILGGERSNVGVESTIVDCTV 189 Query: 186 EKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 + + +LRPGG+ +E L+ I ++ D+ P++PGM HYAP++ +L+ Sbjct: 190 DPPM-VLRPGGVTLEMLQEVCEDIKIDKAIQGKPDKNLKPKAPGMKYRHYAPKA--KLKI 246 Query: 241 IHVNPREALIRFGNVPIKNIEN----AIIS-------------LNLSKTGKLKEAAFNLF 283 I N ++ + + + IEN AI+S ++L L + A NLF Sbjct: 247 IKGNKQKTIEKINEIVQNYIENQKEVAILSTDELCSYFNKGKVISLGSEKNLYDVARNLF 306 Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ DD I + G+G+AI NRL +AA Sbjct: 307 ESLRECDDLNVDIILCQAFDEKGVGLAIMNRLNKAAG 343 >gi|225019404|ref|ZP_03708596.1| hypothetical protein CLOSTMETH_03357 [Clostridium methylpentosum DSM 5476] gi|224947821|gb|EEG29030.1| hypothetical protein CLOSTMETH_03357 [Clostridium methylpentosum DSM 5476] Length = 341 Score = 155 bits (393), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 122/332 (36%), Positives = 182/332 (54%), Gaps = 30/332 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D A++KA L G + +PTETVYGLA ++ NP A+ ++++ K RP NPLI H+SD+ Sbjct: 15 DEQAIQKAAALLREGDLVGMPTETVYGLAANALNPAALLKIFKAKGRPQDNPLIVHISDL 74 Query: 68 SMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 SM+ S P ++ LA+ +WPGPLT++L I +TA L++ R P + Sbjct: 75 SMLDGLVSRLPTIAKSLAQAYWPGPLTMILP--KGKQIPYEATAGLESVGIRFPSHPVAQ 132 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 KLI G PLA PSAN SG+ S T H+ + +IPLI+DGG +GLEST++ V Sbjct: 133 KLIAAAGLPLAAPSANLSGKPSPTTAAHVY-EDLNGKIPLILDGGECSVGLESTVIAV-G 190 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCV----DETSTPQSPGMLKSHYAPRSQV----- 236 E+ VR+LRPGG+ +E L+R VE++ V + + SPGM HY+P++ V Sbjct: 191 EESVRLLRPGGITVEMLERFCPVEVDDAVCHQLKQGAVAASPGMKYKHYSPKAHVVILDG 250 Query: 237 -------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIA 289 L A AL+ G + + +L+ G +E A LF ++ Sbjct: 251 TLEQFCTYLSAHKQKNTYALVFDGE------QQELGVPSLTYGGNAQEQAKELFAALRKL 304 Query: 290 DDSGASSIAFSSIPNH-GLGIAINNRLERAAA 320 D+ GA + ++ P+ G+G+A+ NRL RAA Sbjct: 305 DELGA-GVVYARCPDRSGMGLAVYNRLIRAAG 335 >gi|16080748|ref|NP_391576.1| ribosome maturation factor; RNA binding protein [Bacillus subtilis subsp. subtilis str. 168] gi|221311656|ref|ZP_03593503.1| hypothetical protein Bsubs1_19976 [Bacillus subtilis subsp. subtilis str. 168] gi|221315984|ref|ZP_03597789.1| hypothetical protein BsubsN3_19897 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320895|ref|ZP_03602189.1| hypothetical protein BsubsJ_19840 [Bacillus subtilis subsp. subtilis str. JH642] gi|221325179|ref|ZP_03606473.1| hypothetical protein BsubsS_20001 [Bacillus subtilis subsp. subtilis str. SMY] gi|732384|sp|P39153|YWLC_BACSU RecName: Full=Probable tRNA threonylcarbamoyladenosine biosynthesis protein YwlC; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein YwlC gi|556881|emb|CAA86105.1| Similar to Saccharomyces cerevisiae SUA5 protein [Bacillus subtilis subsp. subtilis str. 168] gi|2636220|emb|CAB15712.1| putative ribosome maturation factor; RNA binding protein [Bacillus subtilis subsp. subtilis str. 168] gi|1095419|prf||2108403D ipc-29d gene Length = 346 Score = 155 bits (393), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 111/335 (33%), Positives = 178/335 (53%), Gaps = 26/335 (7%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 T+ + +A L +A PTETVYGL +++N A++++YE K RP+ NPLI H++D Sbjct: 16 TNDPQIAQAAALLRENEVVAFPTETVYGLGANAKNTDAVKKIYEAKGRPSDNPLIVHIAD 75 Query: 67 ISMVKKHASVDPLSLH-LAKLFWPGPLTLVL----DLLSTTDIHPLSTANLKTACFRVPC 121 IS ++ P L K FWPG LTL+L D LS P TA L+T R+P Sbjct: 76 ISQLEDLTGPAPEKAKTLMKRFWPGALTLILPCKPDALS-----PRVTAGLETVAIRMPD 130 Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 LI G P+A PSAN SG+ S T +H+ + + I I+DGG + IG+EST+ Sbjct: 131 HPLALALIRESGLPIAAPSANLSGKPSPTKAEHV-AHDLDGRIAGIVDGGPTGIGVESTV 189 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV-- 236 ++ + V +LRPGG+ E ++ I + ++ + D+ P SPGM +HYAP + + Sbjct: 190 LSCADDIPV-LLRPGGITKEQIEAVIGPIHVDKGLSDQNEKPISPGMKYTHYAPTAPLAI 248 Query: 237 ------RLRAIHVNPREALIRFGNVPIK---NIENAIISLNLSKTGKLKEAAFNLFNYMK 287 R++ + ++ R G + + + +A + + +L+ A L++ ++ Sbjct: 249 CEGSPERIQHLIQEYQQGGRRVGVLTTEEKAGVYSADYVKSCGRRAQLETVAAGLYDALR 308 Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 D++ I S P+ G+G+AI NRL +AA R Sbjct: 309 SFDENKVDFIIAESFPDTGVGLAIMNRLMKAAGGR 343 >gi|258508168|ref|YP_003170919.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus rhamnosus GG] gi|257148095|emb|CAR87068.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus rhamnosus GG] gi|259649485|dbj|BAI41647.1| translational factor [Lactobacillus rhamnosus GG] Length = 340 Score = 155 bits (393), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 91/227 (40%), Positives = 134/227 (59%), Gaps = 8/227 (3%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 +A L G +A PTETVYGL D+ N TA+ ++Y K RP+ NPLI V+D +MV ++ Sbjct: 12 EAAAALKRGELVAFPTETVYGLGADATNVTAVSQVYAAKGRPSDNPLIVTVADAAMVSQY 71 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYG 132 A++ P + L FWPGPLT++L++L + T L+TA FR P T+KLI T G Sbjct: 72 ATITPDAAKLMDTFWPGPLTIILNILPGR-LSMKVTGGLQTAAFRNPDDALTRKLIATAG 130 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192 P+ PSAN SG+ S T H+L + +I ++D G +++G+ESTI+++ IL Sbjct: 131 VPIVGPSANTSGKPSPTTADHVL-HDLADKIAGVLDDGPTRVGVESTIIDLTVTPPA-IL 188 Query: 193 RPGGL---EIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQV 236 RPG + E+E L + + V + P++PGM HYAP +QV Sbjct: 189 RPGAIGPHELEPLLGPVD-SAAHHVGKNEAPKAPGMKYKHYAPAAQV 234 >gi|227486773|ref|ZP_03917089.1| Sua5/YciO/YrdC/YwlC family protein [Anaerococcus lactolyticus ATCC 51172] gi|227235243|gb|EEI85258.1| Sua5/YciO/YrdC/YwlC family protein [Anaerococcus lactolyticus ATCC 51172] Length = 344 Score = 155 bits (392), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 115/331 (34%), Positives = 171/331 (51%), Gaps = 24/331 (7%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D++A++KA F+ +G +A PTETVYGL D N A R++++ K RP+ NPLI H+S I Sbjct: 14 DTDAIKKAANFIKSGQLVAFPTETVYGLGADGINDEACRKIFKAKGRPSDNPLILHISHI 73 Query: 68 SMVKKHASVDPLSLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 SM+ V+ ++ KLF WPGP+TL+ + I TA T R P Sbjct: 74 SMLDNL--VEEITDKHRKLFELWPGPMTLIFK--KSKSIPDAVTAGGDTVAIRFPSDQIA 129 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + LI P+A PSAN SG+ S TN + + IP+IIDGG S IG+EST++++ Sbjct: 130 RALITEADTPIAAPSANISGRPSPTNASDVY-QDMDGIIPVIIDGGESNIGIESTVIDLS 188 Query: 185 CEKKVRILRPGGLEIETLKRAIS-VEL-EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242 ++ + ILRPG E LK +S + L + VD + P+SPG HYAP++++R+ Sbjct: 189 GDEPI-ILRPGFYTYEFLKDILSDMRLDDSLVDSSKIPKSPGQKYKHYAPKAKLRVFIGE 247 Query: 243 VNPREALIRF-------GNVPIKNIE------NAIISLNLSKTGKLKEAAFNLFNYMKIA 289 P L V I E N+ ++L L + LF+ ++ Sbjct: 248 DVPTHLLSEAEKYKSDGKKVGILAFEEDKEKFNSYPYISLGSRKDLSTMSHVLFSSLREM 307 Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 D G I + LG +I NR+++AAA Sbjct: 308 DRLGVDLILAEGVKEKHLGKSIMNRMKKAAA 338 >gi|199597585|ref|ZP_03211014.1| Putative translation factor (SUA5) [Lactobacillus rhamnosus HN001] gi|199591608|gb|EDY99685.1| Putative translation factor (SUA5) [Lactobacillus rhamnosus HN001] Length = 340 Score = 155 bits (392), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 91/227 (40%), Positives = 134/227 (59%), Gaps = 8/227 (3%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 +A L G +A PTETVYGL D+ N TA+ ++Y K RP+ NPLI V+D +MV ++ Sbjct: 12 EAAAALKRGELVAFPTETVYGLGADATNVTAVSQVYAAKGRPSDNPLIVTVADAAMVSQY 71 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYG 132 A++ P + L FWPGPLT++L++L + T L+TA FR P T+KLI T G Sbjct: 72 ATITPDAAKLMDTFWPGPLTIILNVLPGR-LSMKVTGGLQTAAFRNPDDALTRKLIATAG 130 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192 P+ PSAN SG+ S T H+L + +I ++D G +++G+ESTI+++ IL Sbjct: 131 VPIVGPSANTSGKPSPTTADHVL-HDLADKIAGVLDDGPTRVGVESTIIDLTVTPPA-IL 188 Query: 193 RPGGL---EIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQV 236 RPG + E+E L + + V + P++PGM HYAP +QV Sbjct: 189 RPGAIGPHELEPLLGPVD-SAAHHVGKNEAPKAPGMKYKHYAPAAQV 234 >gi|283796629|ref|ZP_06345782.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium sp. M62/1] gi|291076052|gb|EFE13416.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium sp. M62/1] Length = 377 Score = 155 bits (392), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 118/327 (36%), Positives = 169/327 (51%), Gaps = 35/327 (10%) Query: 20 DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI-SMVKKHASVDP 78 + GL +A PTETVYGL ++ + TA RR+YE K RP+ NPLI H++D ++ A + Sbjct: 54 EGGL-VAFPTETVYGLGANALDETAARRIYEAKGRPSDNPLIAHIADFEALAPLTAEIPE 112 Query: 79 LSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCG-FTKKLIETYGHPLA 136 LA+ FWPGPLT+V + + P +T L+T R+P ++LI G P+A Sbjct: 113 AGRKLAEAFWPGPLTMV---FKKSGVVPHGTTGGLETVAVRMPSDPVARELIRLAGVPIA 169 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SG+ S T +H+L K I +I+DGG IG+ESTIV+V E+ +LRPG Sbjct: 170 APSANTSGRPSPTRAEHVLQDMDGK-IEMIVDGGPVGIGVESTIVDV-TEEIPTLLRPGA 227 Query: 197 LEIETLKRAISVELEYCVDETST--------PQSPGMLKSHYAPRSQV------------ 236 + +E L+ SV E VD T P++PGM HYAP++ + Sbjct: 228 VTMEMLR---SVVGETAVDPAITGPMRADIKPKAPGMKYRHYAPKADLTLVEGETDAVVS 284 Query: 237 RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTG-KLKEA--AFNLFNYMKIADDSG 293 R+ A+ A R G + + ++ + L G + EA A NL+ ++ DD Sbjct: 285 RINALAAEKLGAGQRVGIICTEETKDRYPAGILKSIGMRANEATVAHNLYAVLREFDDLE 344 Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAA 320 I S LG AI NRL +AA Sbjct: 345 VDCIFSESFQADDLGQAIMNRLNKAAG 371 >gi|325971426|ref|YP_004247617.1| Sua5/YciO/YrdC/YwlC family protein [Spirochaeta sp. Buddy] gi|324026664|gb|ADY13423.1| Sua5/YciO/YrdC/YwlC family protein [Spirochaeta sp. Buddy] Length = 437 Score = 155 bits (392), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 112/331 (33%), Positives = 168/331 (50%), Gaps = 25/331 (7%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 I SI +++ L G +A PTETVYGL D+ N A++ ++ K+RP +PLI Sbjct: 117 IPSIQLPKLIKEQAALLAQGKLVAFPTETVYGLGADALNEEAVKSIFAAKQRPFFDPLIV 176 Query: 63 HVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 H++ + ++ +DP + L FWPGPLTLVL + + TAN +T R+P Sbjct: 177 HIAKLEQLEGLVVDLDPRARLLMDHFWPGPLTLVLK--KHPSVPAIVTANSQTVAIRMPS 234 Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 LI+ G +A PSANR G S T H+ + + I I+DGG +G+EST+ Sbjct: 235 NPLALNLIQASGKAIAAPSANRFGYTSPTTATHV-KEQLGERIDAILDGGACTVGIESTV 293 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTP-----QSPGMLKSHYAPRS- 234 +++ C + ILRPG + IE LK + E V + P +SPG+L+SHYAP + Sbjct: 294 LSL-CTEIPTILRPGKIGIEELKPLLG---EVIVTKQVGPTDTHLESPGLLESHYAPTTP 349 Query: 235 -----QVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIA 289 V L + L VP K + +S+T +EAA L+ ++ Sbjct: 350 LYLVDDVTLYKDQSDVGVLLFEKQKVPFKG-----PVVYVSETENAEEAASRLYWAIRHL 404 Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 D + S +P G+G+AINNRL +A+A Sbjct: 405 DTMHLRCMVGSLLPEVGIGVAINNRLRKASA 435 >gi|325479327|gb|EGC82423.1| Sua5/YciO/YrdC/YwlC family protein [Anaerococcus prevotii ACS-065-V-Col13] Length = 344 Score = 155 bits (392), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 112/340 (32%), Positives = 173/340 (50%), Gaps = 42/340 (12%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D ++KA L G +AIPTETVYGL + + A R+++E K RPA NPLI H+S+I Sbjct: 14 DQKIIKKAANLLKDGKLVAIPTETVYGLGANGLDDLACRKIFETKNRPADNPLILHISNI 73 Query: 68 SMVKKHASVDPLSLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 M+ + V+ +S KLF WPGPLT++ + I TA T R P Sbjct: 74 DML--YNLVEGVSDEARKLFDLWPGPLTMIFK--KSKLIPDTVTAGGDTVAIRFPVDKIA 129 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 +++I P+A PSAN SG+ S TN + +IPLI+DGG SKIG+EST++++ Sbjct: 130 REIISEANLPIAAPSANISGRPSPTNAVDCF-FDLNGKIPLIVDGGESKIGIESTVIDL- 187 Query: 185 CEKKVRILRPGGLEIETLKRAI-SVELEYC-VDETSTPQSPGMLKSHYAPRSQVRL---- 238 E ILRPG +E L+ + +V L+ VD+ P+SPG HYAP++++++ Sbjct: 188 SEDVPTILRPGFYTLEMLREILPNVRLDDALVDDNVVPKSPGQKYKHYAPKARMQVYVGK 247 Query: 239 ---------------RAIHVNP---REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAF 280 + IHV E + RF + ++ L + + Sbjct: 248 RASDFIYKKAKSYKNQGIHVGVLVFEEDIDRF---------DEFDRISFGSRNDLNQMSH 298 Query: 281 NLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 LF+ ++ D G I + ++ LG +I NR++++AA Sbjct: 299 TLFSSLRQMDKLGVDLILAEGVMDNNLGKSIMNRMKKSAA 338 >gi|206970259|ref|ZP_03231212.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus AH1134] gi|228924061|ref|ZP_04087337.1| hypothetical protein bthur0011_50340 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|229072792|ref|ZP_04205991.1| hypothetical protein bcere0025_49520 [Bacillus cereus F65185] gi|229082540|ref|ZP_04215003.1| hypothetical protein bcere0023_51570 [Bacillus cereus Rock4-2] gi|229181573|ref|ZP_04308899.1| hypothetical protein bcere0005_49130 [Bacillus cereus 172560W] gi|229193577|ref|ZP_04320521.1| hypothetical protein bcere0002_52210 [Bacillus cereus ATCC 10876] gi|206734836|gb|EDZ52005.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus AH1134] gi|228589882|gb|EEK47757.1| hypothetical protein bcere0002_52210 [Bacillus cereus ATCC 10876] gi|228601941|gb|EEK59436.1| hypothetical protein bcere0005_49130 [Bacillus cereus 172560W] gi|228700972|gb|EEL53495.1| hypothetical protein bcere0023_51570 [Bacillus cereus Rock4-2] gi|228710283|gb|EEL62258.1| hypothetical protein bcere0025_49520 [Bacillus cereus F65185] gi|228835551|gb|EEM80916.1| hypothetical protein bthur0011_50340 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 346 Score = 155 bits (392), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 112/325 (34%), Positives = 169/325 (52%), Gaps = 21/325 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++A + L +A PTETVYGL ++ + AI +++E K RP+ NPLI H+ S + Sbjct: 21 LQEAAKLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQLD 80 Query: 72 KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P++ L FWPGPLT++L I TA L T R+P LIE Sbjct: 81 GIVKEIPPVAEKLMAHFWPGPLTIILP--RKEGISEKVTAGLNTVGVRMPDHPIALALIE 138 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+A PSANRSG+ S T H+ + +I I+DGG + +G+EST+++ C V Sbjct: 139 EANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVID--CTSAV 195 Query: 190 -RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPR--------SQVRL 238 ILRPGG+ E L+ I +V L+ + DE P+SPGM +HYAP+ S+ + Sbjct: 196 PTILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255 Query: 239 RAIHVNPREALIRFG---NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 + + +E + G +++ +A + L+ L A L++ ++ D S Sbjct: 256 QHLVDEKKEEGFKVGVLTTEEYQHVYSADVILSCGVRSDLASVATKLYDVLRTFDASEVD 315 Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320 I S PN G+G AI NRL +AA Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAG 340 >gi|309808063|ref|ZP_07701981.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LactinV 01V1-a] gi|308168665|gb|EFO70765.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LactinV 01V1-a] Length = 331 Score = 155 bits (392), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 112/331 (33%), Positives = 170/331 (51%), Gaps = 26/331 (7%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I + + +++A + L G +A PTETVYGL D+ N A++ +Y K RP+ NPLI V+ Sbjct: 5 IFNKDNIKQAAQLLAQGELVAFPTETVYGLGADATNEEAVKNVYRAKGRPSDNPLIVTVA 64 Query: 66 DISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 D +M+KK+ + P L FWPGPLTL+L + + T L TA FR P Sbjct: 65 DEAMMKKYVTEIPADAQKLIDYFWPGPLTLIL-FIKEGALPDAVTGGLPTAAFRCPQDPL 123 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 T +LI+T P+ PSAN S + S T +H+ + +I IID G +KIGLESTI+++ Sbjct: 124 TNELIQTLARPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDNGPTKIGLESTIIDL 182 Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 ++ V +LRPG + + L + ++ + V P++PGM HYAP S V Sbjct: 183 SVDQPV-VLRPGEITPDELSEVLHKKVLLNKGTVQTKDVPKAPGMKYRHYAPSSPVY--- 238 Query: 241 IHVNPREALIRFGNVP-IKNIENAIISLNLSKTGK---------LKEAAFNLFNYMKIAD 290 I +P + F +P ++ A ++ NL G + EAA NLF ++ D Sbjct: 239 IVDDPAD----FAYIPHDSSVGVAALADNLHDLGDADSFSLGVSIDEAAHNLFGALRYFD 294 Query: 291 -DSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + +I + A NRL +AA+ Sbjct: 295 SNEQIKTIYVQGFAKGNISAAYMNRLNKAAS 325 >gi|323704817|ref|ZP_08116394.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323535743|gb|EGB25517.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 349 Score = 155 bits (392), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 111/337 (32%), Positives = 176/337 (52%), Gaps = 30/337 (8%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D N + +A L G +A PTETVYG+ +S NP A+ +++ K RP NPLI H+S+ Sbjct: 13 DINLIDEAASILLNGGLVAFPTETVYGIGANSLNPDAVAKIFIAKGRPQDNPLILHISEF 72 Query: 68 SMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCG-FT 124 + K+A P +L LA+ FWPGPLT++ + +DI P ++TA + T R+P Sbjct: 73 QDLFKYAKNVPNDALKLARQFWPGPLTMIFE---KSDIVPSINTAGMNTVAIRMPSNKIA 129 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 LI+ G P++ PSAN SG+ S T+ H++ S + + +IIDGG +G+EST+V++ Sbjct: 130 HTLIKRAGIPVSAPSANLSGKPSPTDASHVI-SDLYGRVDMIIDGGSCDVGVESTVVDMT 188 Query: 185 CEKKVRILRPGGLEIETLKRAI-SVELEYCVDETST----PQSPGMLKSHYAPRSQVRLR 239 E ILRPGG+ E + + SVE++ V + + P+SPGM HY+P ++V + Sbjct: 189 GEIPT-ILRPGGITKEMIMGVVGSVEVDPIVYKKPSLDVKPKSPGMKYKHYSPDAEVYIV 247 Query: 240 AIHV----------------NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLF 283 ++ N ++ I + N + L + + + A NLF Sbjct: 248 KGNIGDVIKKIQELTEFQLNNGKKVGIMATEQTCEKYRNGEV-LVVGNRERPETIAKNLF 306 Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ D G + +G+AI NRLE+AA Sbjct: 307 RCLREFDKKGVDVVYAEGFDYDEIGLAIMNRLEKAAG 343 >gi|312874663|ref|ZP_07734687.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LEAF 2053A-b] gi|311089893|gb|EFQ48313.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LEAF 2053A-b] Length = 331 Score = 155 bits (391), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 112/331 (33%), Positives = 170/331 (51%), Gaps = 26/331 (7%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I + + +++A + L G +A PTETVYGL D+ N A++ +Y K RP+ NPLI V+ Sbjct: 5 IFNKDNIKQAAQLLAQGELVAFPTETVYGLGADATNEEAVKNVYRAKGRPSDNPLIVTVA 64 Query: 66 DISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 D +M+KK+ + P L FWPGPLTL+L + + T L TA FR P Sbjct: 65 DEAMMKKYVTEIPADAQKLIDYFWPGPLTLIL-FIKKGALPDAVTGGLPTAAFRCPQDPL 123 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 T +LI+T P+ PSAN S + S T +H+ + +I IID G +KIGLESTI+++ Sbjct: 124 TNELIQTLARPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDNGPTKIGLESTIIDL 182 Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 ++ V +LRPG + + L + ++ + V P++PGM HYAP S V Sbjct: 183 SVDQPV-VLRPGEITPDELSEVLHKKVLLNKGTVQTKDVPKAPGMKYRHYAPSSPVY--- 238 Query: 241 IHVNPREALIRFGNVP-IKNIENAIISLNLSKTGK---------LKEAAFNLFNYMKIAD 290 I +P + F +P ++ A ++ NL G + EAA NLF ++ D Sbjct: 239 IVDDPAD----FAYIPHDSSVGVAALADNLHDLGDADSFSLGVSIDEAAHNLFGALRYFD 294 Query: 291 -DSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + +I + A NRL +AA+ Sbjct: 295 SNEQIKTIYVQGFAKGNISAAYMNRLNKAAS 325 >gi|194333295|ref|YP_002015155.1| Sua5/YciO/YrdC/YwlC family protein [Prosthecochloris aestuarii DSM 271] gi|194311113|gb|ACF45508.1| Sua5/YciO/YrdC/YwlC family protein [Prosthecochloris aestuarii DSM 271] Length = 316 Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 123/328 (37%), Positives = 168/328 (51%), Gaps = 24/328 (7%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 MQ + ITDS R+A +F++ G +A PTETVYGL D N A++R++ K RP NPL Sbjct: 1 MQTL-ITDSP--REAADFINRGQIVAFPTETVYGLGADITNDDAVQRIFLAKGRPGDNPL 57 Query: 61 ICHVSDISMVKK-HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I HV V+K AS+ + L F+PGPLTLV L + I PL TA L T R Sbjct: 58 IVHVYSPKEVEKVAASIPETARKLMDRFFPGPLTLV--LCKQSRISPLVTAGLPTVGVRC 115 Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T+ + HP+A PSAN SG+ S T+ K + + +I I+ G S IGLES Sbjct: 116 PRHPVTRAFLRECRHPVAAPSANLSGKPSSTDWKSV-HEDLNGKINCILRGEQSAIGLES 174 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQV 236 TIV+ E R+LR G + ++ L RAI L ++E + P+SPG+ HYAP +++ Sbjct: 175 TIVDCATEPP-RLLRAGAISLDEL-RAIVPGLLGPAAIEEHAQPKSPGLKYPHYAPSAEI 232 Query: 237 RLRAIHVNPRE-----ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291 RL E A I P E A ++ G E A LF + + D Sbjct: 233 RLCGEEYGVCEGGKETAWIGLSPPP----EGAAVTCRCDDAG---EYAHRLFRFFRECDR 285 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAA 319 +I P G+G A+ +RL RAA Sbjct: 286 EHIRTIFCEMPPPEGIGQALRDRLRRAA 313 >gi|310819587|ref|YP_003951945.1| sua5/ycio/yrdc/ywlc family protein [Stigmatella aurantiaca DW4/3-1] gi|309392659|gb|ADO70118.1| Sua5/YciO/YrdC/YwlC family protein [Stigmatella aurantiaca DW4/3-1] Length = 313 Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 115/318 (36%), Positives = 164/318 (51%), Gaps = 16/318 (5%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-S 75 E L +G IA+PTETVYGLA ++ + A+RR++ IK RPA +PLI H+ + + A Sbjct: 2 EILRSGGVIALPTETVYGLAANAEDELAVRRVFAIKGRPATHPLIVHLPQAEALPRWARD 61 Query: 76 VDPLSLHLAKLFWPGPLTLVLDLLS-TTDIHPLSTANLKTACFRVPC-GFTKKLIETYGH 133 + P + LA FWPGPLTLVL S TD T T RVP ++ G Sbjct: 62 IPPEAWKLAAAFWPGPLTLVLRRTSRATDA---VTGGQDTVALRVPNHPLALAVLSALGG 118 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 LA PSANR G++S T H+ + ++ LI+DGG +G+ESTIV++ ILR Sbjct: 119 GLAAPSANRFGRVSPTTAGHV-REDLGSDVDLILDGGPCTVGVESTIVDLSSGDPA-ILR 176 Query: 194 PGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI-HVNPREALIRF 252 PGGL E L+ + + V TS+ + G L SHYAPR+ V L + R +R Sbjct: 177 PGGLAAEELEHVLGRPVP--VRATSSVRVSGSLASHYAPRAGVTLVEVPEAAARAQALRG 234 Query: 253 GNVPIKNIENAIISL-----NLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307 + + + A ++L AA +L+ ++ AD +G + GL Sbjct: 235 QGLRVGVLGPASLALPPGVPRFDMPEDPAGAAHDLYLRLREADLAGLDLLLACLPSARGL 294 Query: 308 GIAINNRLERAAAPRNQS 325 G+A+ +RL RAAAPR Sbjct: 295 GLAVRDRLARAAAPRTSG 312 >gi|251771701|gb|EES52276.1| Sua5/YciO/YrdC/YwlC family protein [Leptospirillum ferrodiazotrophum] Length = 357 Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 108/325 (33%), Positives = 162/325 (49%), Gaps = 15/325 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + L +A L+AGL + PTETVYGL D+ NP A+RR+YEIK RPA +PLI H++ + Sbjct: 30 DDLERAALRLEAGLTVVFPTETVYGLGADASNPEAVRRIYEIKGRPADHPLIVHIAGLGD 89 Query: 70 VKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 ++ A + P + L + FWPGPLTL+L ++ T T RVP L Sbjct: 90 LEAWADPIPPEAWRLGERFWPGPLTLILPCRG--EVPKAVTGGRDTIAVRVPAHPVAAAL 147 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ +G +A PSANR G++S T H+ +E ++++GG +IG+ESTIV++ E Sbjct: 148 LKAFGRGIAAPSANRFGRLSPTTSGHV-REEFGEEAGMVLEGGPCRIGVESTIVSLVGET 206 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVR-LRAIHVNPR 246 + ILRPG L + + ++ + P +PG HYAP++ + L H+ R Sbjct: 207 PL-ILRPGALTAGQIGEVLGRKIGGASEGQVVPAAPGSHSVHYAPKTPLEILSGTHLPGR 265 Query: 247 E-ALIRFGN-VPIKNIENAIISLNLSKTG------KLKEAAFNLFNYMKIADDSGASSIA 298 IR G I + S K + E A L+ + D SG + Sbjct: 266 VFRTIRAGEKAGILALTQGAGSFGSDKVATILMPSRADEYARELYAALHRLDRSGCDRLF 325 Query: 299 FSSIPNHGLGIAINNRLERAAAPRN 323 P IA+ +RL RA A R+ Sbjct: 326 AERPPATEEWIAVRDRLGRACAGRS 350 >gi|228955573|ref|ZP_04117575.1| hypothetical protein bthur0006_49270 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228804101|gb|EEM50718.1| hypothetical protein bthur0006_49270 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 342 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 112/325 (34%), Positives = 169/325 (52%), Gaps = 21/325 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++A + L +A PTETVYGL ++ + AI +++E K RP+ NPLI H+ S + Sbjct: 17 LQEAAKLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQLD 76 Query: 72 KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P++ L FWPGPLT++L I TA L T R+P LIE Sbjct: 77 GIVKEIPPVAEKLMAHFWPGPLTIILP--RKEGISEKVTAGLNTVGVRMPDHPIALALIE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+A PSANRSG+ S T H+ + +I I+DGG + +G+EST+++ C V Sbjct: 135 EANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVID--CTSAV 191 Query: 190 -RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPR--------SQVRL 238 ILRPGG+ E L+ I +V L+ + DE P+SPGM +HYAP+ S+ + Sbjct: 192 PTILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 251 Query: 239 RAIHVNPREALIRFG---NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 + + +E + G +++ +A + L+ L A L++ ++ D S Sbjct: 252 QHLVDEKKEEGFKVGVLTTEEYQHVYSADVILSCGVRSDLASVATKLYDVLRTFDASEVD 311 Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320 I S PN G+G AI NRL +AA Sbjct: 312 VIFSESFPNEGIGNAIMNRLTKAAG 336 >gi|260437528|ref|ZP_05791344.1| Sua5/YciO/YrdC/YwlC family protein [Butyrivibrio crossotus DSM 2876] gi|292810161|gb|EFF69366.1| Sua5/YciO/YrdC/YwlC family protein [Butyrivibrio crossotus DSM 2876] Length = 351 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 118/341 (34%), Positives = 170/341 (49%), Gaps = 32/341 (9%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 I + ++ A E + G +A PTETVYGL DS +P A ++Y K RP+ NPLI H+ Sbjct: 12 EIENDKIIKTAAEIISRGGLVAFPTETVYGLGGDSFDPAAAEKIYAAKGRPSDNPLIVHI 71 Query: 65 SDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-G 122 S+ + K + P ++ LA FWPGPLT+++ + T L T R+P Sbjct: 72 SEFDDIYKLSDEVPEIAKVLADKFWPGPLTMIVK--KNKSVPVTVTGGLDTVAVRLPSHK 129 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 +KLI+ G +A PSAN SG+ S T KH++ + I +IID G +IGLESTIV+ Sbjct: 130 VARKLIKESGTFIAAPSANISGRPSPTTAKHVI-DDLNGRIDMIIDDGSIEIGLESTIVD 188 Query: 183 VQCEKKVRILRPGGLEIETLKRAIS-VELEYC----VDETSTPQSPGMLKSHYAPRSQVR 237 + + V ILRPG + E L+ + V L+ V E P++PGM HYAP+++ Sbjct: 189 LTEDVPV-ILRPGYVTFEMLEETVGKVRLDKALMTGVKENVKPKAPGMKYRHYAPKAE-- 245 Query: 238 LRAIHVNPREALIRFGNVPIKNIE---------------NAIIS---LNLSKTGKLKEAA 279 L I +P + + R + +K E + I S L L + E A Sbjct: 246 LTIIEGSPEKTVARIEEL-VKEAERKGQKAGIMLSEENFDKICSDYKLCLGSSSDENEIA 304 Query: 280 FNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 NLF ++ DD I G+G AI NRL +AA Sbjct: 305 RNLFACLRKFDDMDIDVIFSEGFSEEGIGQAIMNRLLKAAG 345 >gi|189499461|ref|YP_001958931.1| Sua5/YciO/YrdC/YwlC family protein [Chlorobium phaeobacteroides BS1] gi|189494902|gb|ACE03450.1| Sua5/YciO/YrdC/YwlC family protein [Chlorobium phaeobacteroides BS1] Length = 318 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 106/308 (34%), Positives = 162/308 (52%), Gaps = 9/308 (2%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A +++ G +A PTETVYGL D + AI ++Y K RP NPLI H+ + +++ A Sbjct: 12 AATWINRGEIVAFPTETVYGLGADITSDAAIEKIYAAKGRPPDNPLIVHIHSLHQLQEVA 71 Query: 75 SVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132 S P S L F+PGPLT++L+ ++ L TA L T R+P ++ + Sbjct: 72 SDIPRSAESLIHHFFPGPLTVILN--KNPEVSQLVTAGLPTVGIRLPAHPVAQEFLRRCT 129 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192 HP+A PSAN SG+ S T+ K + + +IP ++ G S IGLESTIV+ R+L Sbjct: 130 HPVAAPSANISGRPSSTDWKAVY-DDLKGKIPCVLKGPQSTIGLESTIVDCSVHPP-RLL 187 Query: 193 RPGGLEIETLKRAI-SVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIR 251 R G + +E+L+ + + ++T +P+SPG+ HY+P +Q+ L P E Sbjct: 188 RSGAISLESLRNVVPQIRAGSSNEKTHSPKSPGLKYPHYSPSAQIILCEEGYPPIERETN 247 Query: 252 FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAI 311 + I I + K +E AF LF++ + D G S I P G+G+AI Sbjct: 248 SAWIGISQQPEGIAKTAICKNP--EEYAFRLFSFFRECDREGISVIFCEMPPADGIGLAI 305 Query: 312 NNRLERAA 319 +RL+RAA Sbjct: 306 RDRLQRAA 313 >gi|328957993|ref|YP_004375379.1| putative ribosome maturation factor; RNA binding protein [Carnobacterium sp. 17-4] gi|328674317|gb|AEB30363.1| putative ribosome maturation factor; RNA binding protein [Carnobacterium sp. 17-4] Length = 329 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 102/325 (31%), Positives = 167/325 (51%), Gaps = 21/325 (6%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 KA + + G I+ PTETVYGL D+ N A++++Y K RP+ NPLI HVS I V+++ Sbjct: 3 KAAQKIQQGELISFPTETVYGLGADATNEAAVKKVYSAKGRPSDNPLIVHVSTIEEVEQY 62 Query: 74 ASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY 131 P ++ L + FWPGPLTL+ + P TA L + R+P T +LI Sbjct: 63 VQEVPEVAKKLMQTFWPGPLTLIFKVKDHV-FAPTVTAGLASVAMRMPDNEVTLQLIRKS 121 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 G PL PSAN SG+ S T H+ + +I ++D G + +GLEST++++ K I Sbjct: 122 GKPLVGPSANTSGKPSPTTADHVY-HDLKGKIAGVLDDGDTGLGLESTVLDITDPKLPTI 180 Query: 192 LRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAP---------RSQVRLRA 240 LRPG E L++ I + + P++PGM HY+P S++ +A Sbjct: 181 LRPGATTKEALEKVIGTVFVDRHLISNDEVPKAPGMKYKHYSPNEPVVIVVGESEIWQKA 240 Query: 241 IHVNPREALIRFGNVPIKNIENAI-----ISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 I ++ + G + +++ N + +L + + +A+ L++ ++ + + A+ Sbjct: 241 IKTYQKQGE-KIGLLANQDLLNQFQDTVTATYSLGENKNIHDASRRLYSGLRYFETTDAT 299 Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320 I + GLG A NRL++AA Sbjct: 300 LILAEAHEQKGLGEAYMNRLQKAAG 324 >gi|329851505|ref|ZP_08266262.1| SUA5 domain protein [Asticcacaulis biprosthecum C19] gi|328840351|gb|EGF89923.1| SUA5 domain protein [Asticcacaulis biprosthecum C19] Length = 304 Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 100/297 (33%), Positives = 151/297 (50%), Gaps = 12/297 (4%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 I +PTETVYGL + +P A+ +++E K RP NPLI H+ + +D +L LA Sbjct: 16 IHLPTETVYGLGARADDPAAVVKVFEAKGRPRFNPLIVHIGSVESAAAIGVMDERALALA 75 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRS 143 FWPGPLTLV+ + T L+ A L + R+P +++ +G + PSANRS Sbjct: 76 DTFWPGPLTLVVPVRDTVAACDLARAGLDSVALRLPSHPLALEVLRGFGGGVVAPSANRS 135 Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203 G+ S T L + + + +DGG ++G+EST+V++ + R LR G + ++ Sbjct: 136 GRPSPTTQADSLEET-GTSVAVSLDGGACQVGVESTVVSLLGD--ARYLRAGAVTRAQIE 192 Query: 204 RAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENA 263 I D+T +SPG L HYAP + V H+N + + + A Sbjct: 193 AVIG---PLAADDTEGHRSPGRLSLHYAPDAPV-----HINMETPPLGAAYLAFGPTDYA 244 Query: 264 IISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + LS EAA NLF+ ++ AD IA + IP G+G AIN+R+ RAA Sbjct: 245 GPVIQLSANRDPAEAAANLFSGLREADRLNPVCIAIAPIPGDGIGEAINDRIRRAAG 301 >gi|325911759|ref|ZP_08174166.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners UPII 143-D] gi|325476525|gb|EGC79684.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners UPII 143-D] Length = 331 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 113/332 (34%), Positives = 171/332 (51%), Gaps = 26/332 (7%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 I + + +++A + L G +A PTETVYGL D+ N A++ +Y K RP+ NPLI V Sbjct: 4 QIFNKDNIKQAAQLLAQGELVAFPTETVYGLGADATNEEAVKNVYRAKGRPSDNPLIVTV 63 Query: 65 SDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 +D +M+KK+ + P L FWPGPLTL+L + T + T L TA FR P Sbjct: 64 ADEAMMKKYVTEIPADAQKLIDHFWPGPLTLILFVKEGT-LPDAVTGGLPTAAFRCPQDP 122 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 T +LI+T P+ PSAN S + S T +H+ + +I IID G +KIGLESTI++ Sbjct: 123 LTNELIQTLTRPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDNGPTKIGLESTIID 181 Query: 183 VQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 + ++ V +LRPG + + L + ++ + V P++PGM HYAP S V Sbjct: 182 LSVDQPV-VLRPGEITPDELSEVLDKKVLLNKGTVQTKDVPKAPGMKYRHYAPSSPVY-- 238 Query: 240 AIHVNPREALIRFGNVP-IKNIENAIISLNLSKTGK---------LKEAAFNLFNYMKIA 289 I +P + F +P ++ A ++ NL G + EAA NLF ++ Sbjct: 239 -IVDDPAD----FAYIPHDSSVGVAALADNLHDLGDADRFSLGVSIDEAAHNLFGALRYF 293 Query: 290 D-DSGASSIAFSSIPNHGLGIAINNRLERAAA 320 D + +I + A NRL +AA+ Sbjct: 294 DSNEQIKTIYVQGFAKGNISAAYMNRLNKAAS 325 >gi|312871613|ref|ZP_07731705.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LEAF 3008A-a] gi|311092838|gb|EFQ51190.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LEAF 3008A-a] Length = 338 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 113/332 (34%), Positives = 171/332 (51%), Gaps = 26/332 (7%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 I + + +++A + L G +A PTETVYGL D+ N A++ +Y K RP+ NPLI V Sbjct: 11 QIFNKDNIKQAAQLLAQGELVAFPTETVYGLGADATNEEAVKNVYRAKGRPSDNPLIVTV 70 Query: 65 SDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 +D +M+KK+ + P L FWPGPLTL+L + T + T L TA FR P Sbjct: 71 ADEAMMKKYVTEIPADAQKLIDHFWPGPLTLILFVKEGT-LPDAVTGGLPTAAFRCPQDP 129 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 T +LI+T P+ PSAN S + S T +H+ + +I IID G +KIGLESTI++ Sbjct: 130 LTNELIQTLARPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDNGPTKIGLESTIID 188 Query: 183 VQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 + ++ V +LRPG + + L + ++ + V P++PGM HYAP S V Sbjct: 189 LSVDQPV-VLRPGEITPDELSEVLHKKVLLNKGTVQTKDVPKAPGMKYRHYAPSSPVY-- 245 Query: 240 AIHVNPREALIRFGNVP-IKNIENAIISLNLSKTGK---------LKEAAFNLFNYMKIA 289 I +P + F +P ++ A ++ NL G + EAA NLF ++ Sbjct: 246 -IVDDPAD----FAYIPHDSSVGVAALADNLHDLGDADRFSLGVSIDEAAHNLFGALRYF 300 Query: 290 D-DSGASSIAFSSIPNHGLGIAINNRLERAAA 320 D + +I + A NRL +AA+ Sbjct: 301 DSNEQIKTIYVQGFAKGNISAAYMNRLNKAAS 332 >gi|229020544|ref|ZP_04177289.1| hypothetical protein bcere0030_50250 [Bacillus cereus AH1273] gi|229026765|ref|ZP_04183097.1| hypothetical protein bcere0029_50320 [Bacillus cereus AH1272] gi|228734488|gb|EEL85150.1| hypothetical protein bcere0029_50320 [Bacillus cereus AH1272] gi|228740764|gb|EEL91017.1| hypothetical protein bcere0030_50250 [Bacillus cereus AH1273] Length = 346 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 111/326 (34%), Positives = 169/326 (51%), Gaps = 23/326 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++A L +A PTETVYGL ++ + AI +++ K RP+ NPLI H+ S + Sbjct: 21 LKEAARLLRENEAVAFPTETVYGLGANAMDDEAIAKIFAAKGRPSDNPLIVHIGTKSQLD 80 Query: 72 KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P++ L + FWPGPLT++L I TA L T R+P LIE Sbjct: 81 GIVREIPPVAEKLMEHFWPGPLTIILP--RKEGISERVTAGLNTVGVRMPDHPVALALIE 138 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+A PSANRSG+ S T H+ + +I I+DGG + +G+EST+++ C +V Sbjct: 139 EANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVID--CTSEV 195 Query: 190 -RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPRSQVRL-------- 238 ILRPGG+ E L+ I +V L+ + DE P+SPGM +HYAP++ + + Sbjct: 196 PTILRPGGITKEQLEAVIGNVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255 Query: 239 -RAIHVNPREALIRFG---NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGA 294 R + +E + G +++ +A + L+ L A L++ ++ D S Sbjct: 256 QRIVDEKKKEGF-KVGVLTTEEYQHVYSADVVLSCGMRNDLASVATKLYDVLRTFDASEV 314 Query: 295 SSIAFSSIPNHGLGIAINNRLERAAA 320 I S PN G+G AI NRL +AA Sbjct: 315 DVIFSESFPNEGIGNAIMNRLTKAAG 340 >gi|163814228|ref|ZP_02205619.1| hypothetical protein COPEUT_00381 [Coprococcus eutactus ATCC 27759] gi|158450473|gb|EDP27468.1| hypothetical protein COPEUT_00381 [Coprococcus eutactus ATCC 27759] Length = 350 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 112/345 (32%), Positives = 170/345 (49%), Gaps = 34/345 (9%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 + D + +A E L +G +A PTETVYGL D+ NP A ++Y K RP+ NPLI H+ Sbjct: 9 GVDDEHMYEQAAEILRSGGLVAFPTETVYGLGGDALNPDASHKIYSAKGRPSDNPLIVHI 68 Query: 65 SDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 +D V + A V + L + FWPGPLT++L+ + + +T L T R+P Sbjct: 69 ADTDSVYELAEYVSDDTKKLMEAFWPGPLTIILNKKAV--VPHTTTGGLDTVAIRMPSHP 126 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 KLI+ G +A PSAN SG+ S T H+ + I +IIDGG IG+ESTIV+ Sbjct: 127 VAMKLIKDSGVYIAAPSANLSGRPSPTTAHHV-QQDMDGRIDMIIDGGAVGIGIESTIVD 185 Query: 183 VQCEKKVRILRPGGLEIETLKRAISVELEYCVDETST-------PQSPGMLKSHYAPRSQ 235 + ++ ILRPG + E +K + + +D T P++PGM +HYAP+ + Sbjct: 186 MTGDRPT-ILRPGYITPEMIKNIVG---DVTIDPAITGMNNALRPKAPGMKYTHYAPKGE 241 Query: 236 V------------RLRAIHVNPREALIRFG---NVPIKNIENAIISLNLSKTGKLKE--- 277 + R+R++ R + + + N + N+ G K Sbjct: 242 LSIVEGERLVAAERIRSLVAEKRAQGYKTAILCDTENVGLYNDGVCENIYDAGSKKNEIT 301 Query: 278 AAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 + L++ ++ DD GA I S +G AI NRL +AA R Sbjct: 302 VSAGLYSLLRTCDDIGAQYIYSESFEEGDMGYAIMNRLIKAAGHR 346 >gi|260663284|ref|ZP_05864175.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus fermentum 28-3-CHN] gi|260552136|gb|EEX25188.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus fermentum 28-3-CHN] Length = 342 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 107/329 (32%), Positives = 171/329 (51%), Gaps = 27/329 (8%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A + + AG +A PTETVYGL D+ N A++++Y K RP+ NPLI HVS ++MV+ Sbjct: 11 VKQAAKLIQAGQLVAFPTETVYGLGADATNEEAVKQVYLAKGRPSDNPLIVHVSSLAMVE 70 Query: 72 KHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129 A+ P + L FWPG LT++L T + + T L T FR P C T LI Sbjct: 71 HFAAEIPAKAKQLMDRFWPGSLTIILRFKPGT-LSKMVTGGLDTVAFRFPDCQPTLDLIS 129 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G P+ PSAN SG+ S T H+ + +I IID G +++G+EST++++ + V Sbjct: 130 QAGVPIVGPSANTSGKPSPTTANHVY-HDLNNKIAGIIDNGPTRVGVESTVLDMSTSQPV 188 Query: 190 RILRPGGLEIETLKRAI-SVEL-EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 ILRPG + + ++ I S+++ + V + P++PGM HYAP +QV + V+P + Sbjct: 189 -ILRPGAVTKQDIEGVIGSIDINHHQVKQDEVPKAPGMKYKHYAPNAQVYI----VDPAD 243 Query: 248 ALIRFGNVPIKNIEN---------------AIISLNLSKTGKLKEAAFNLFNYMKIADDS 292 V ++ E ++ + S ++EA+ +LF ++ D+ Sbjct: 244 DWGEVAAVIAQSKEQVGLMATDQVLHAHVWSVQADQFSLGTGVQEASAHLFEGLRDFDNQ 303 Query: 293 GASSIAF-SSIPNHGLGIAINNRLERAAA 320 F GLG A NRL ++A Sbjct: 304 EEIHQIFCQGFEPTGLGAAYMNRLNKSAG 332 >gi|171696344|ref|XP_001913096.1| hypothetical protein [Podospora anserina S mat+] gi|170948414|emb|CAP60578.1| unnamed protein product [Podospora anserina S mat+] Length = 413 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 92/228 (40%), Positives = 133/228 (58%), Gaps = 11/228 (4%) Query: 24 PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHL 83 P+A PTETVYGL D+ + TA++ +Y K RP+ NPLI HVSD+SM+ +++ + L Sbjct: 68 PVAFPTETVYGLGADATSSTAVKGIYTAKGRPSDNPLIVHVSDLSMLSTLSTIPEIYHEL 127 Query: 84 AKLFWPGPLTLVLDLLSTTD-IHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSAN 141 FWPGPLT++L + ++ + P TA L T R+P + LI+ G PLA PSAN Sbjct: 128 ISKFWPGPLTILLPVPTSGQLLAPEVTAGLTTFGARMPDSPLARALIQLVGKPLAAPSAN 187 Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIET 201 S + S T H+L + +I LI+DGG +G+EST+V+ C V +LRPGG+ IE Sbjct: 188 ASTRPSPTKAVHVL-EDLEGKIELILDGGDCAVGVESTVVDGLCNPPV-VLRPGGVGIEE 245 Query: 202 LKRAISVEL-------EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242 +++ E V E P++PGM HY+PR++V L H Sbjct: 246 IRQVKGWEGVVKGYKDRSEVGEGHKPRAPGMKYKHYSPRARVVLFEGH 293 >gi|312871989|ref|ZP_07732071.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LEAF 2062A-h1] gi|311092566|gb|EFQ50928.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LEAF 2062A-h1] Length = 331 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 113/331 (34%), Positives = 171/331 (51%), Gaps = 26/331 (7%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I + + +++A + L G +A PTETVYGL D+ N A++ +Y K RP+ NPLI V+ Sbjct: 5 IFNKDNIKQAAQLLAQGELVAFPTETVYGLGADATNEEAVKNVYRAKGRPSDNPLIVTVA 64 Query: 66 DISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 D +M+KK+ + P L FWPGPLTL+L + T + T L TA FR P Sbjct: 65 DEAMMKKYVTEIPADAQKLIDHFWPGPLTLILFVKEGT-LPDAVTGGLPTAAFRCPQDPL 123 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 T +LI+T P+ PSAN S + S T +H+ + +I IID G +KIGLESTI+++ Sbjct: 124 TNELIQTLTRPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDNGPTKIGLESTIIDL 182 Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 ++ V +LRPG + + L + ++ + V P++PGM HYAP S V Sbjct: 183 SVDQPV-VLRPGEITPDELSEVLDKKVLLNKGTVQTKDVPKAPGMKYRHYAPSSPVY--- 238 Query: 241 IHVNPREALIRFGNVP-IKNIENAIISLNLSKTGK---------LKEAAFNLFNYMKIAD 290 I +P + F +P ++ A ++ NL G + EAA NLF ++ D Sbjct: 239 IVDDPAD----FAYIPHDSSVGVAALADNLHDLGDADSFSLGVSIDEAAHNLFGALRYFD 294 Query: 291 -DSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + +I + A NRL +AA+ Sbjct: 295 SNEQIKTIYVQGFAKGNISAAYMNRLNKAAS 325 >gi|317121006|ref|YP_004101009.1| translation factor SUA5 [Thermaerobacter marianensis DSM 12885] gi|315590986|gb|ADU50282.1| translation factor SUA5 [Thermaerobacter marianensis DSM 12885] Length = 386 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 123/354 (34%), Positives = 172/354 (48%), Gaps = 45/354 (12%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D+ A+R A L G +A PTETVYGL D+ N A+ R++ K RPA NPLI HV+ Sbjct: 21 DAAAIRHAGAVLRRGGLVAFPTETVYGLGADALNAQAVVRIFAAKGRPADNPLIVHVTGP 80 Query: 68 SMVKKH--ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124 M A+ + L FWPGPLTLVL + + A L T R P Sbjct: 81 EMAGPAVVAAWPDAARRLVDRFWPGPLTLVLP--AGPAVPAAVRAGLPTVAVRCPAHPVA 138 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + LI G P+A PSANRSG+ S T + + + + +++D G +G+EST+V+V Sbjct: 139 QALIAAAGTPVAAPSANRSGRPSPTRAGDVW-ADLGPHLDVLLDAGPVPVGVESTVVDVT 197 Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYC--VDETSTPQSPGMLKSHYAPRSQVRL---- 238 R+LRPGGL +E L+RA+ V L ++ S +PGM HYAP + V L Sbjct: 198 TWPP-RLLRPGGLPVEDLERALGVALAPPPRLEAASAAPAPGMKYRHYAPEAPVMLVDEP 256 Query: 239 --------RAIHVNPREALI-----------RFG---NVPIKNIENA----------IIS 266 R + R AL+ R G P E A +++ Sbjct: 257 AAGVEPVRRWLAAGQRVALVGCREDLEALLDRAGLAAAWPDPWDERAGAGGADDPSPVVA 316 Query: 267 LNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 L+L + E A LF ++ AD +GA+ I ++P GLG A+ NRL +AAA Sbjct: 317 LDLGPRARPDEQARRLFRALRAADAAGATRILALAVPEVGLGRAVMNRLRKAAA 370 >gi|329921099|ref|ZP_08277622.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners SPIN 1401G] gi|328935006|gb|EGG31495.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners SPIN 1401G] Length = 331 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 112/331 (33%), Positives = 170/331 (51%), Gaps = 26/331 (7%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I + + +++A + L G +A PTETVYGL D+ N A++ +Y K RP+ NPLI V+ Sbjct: 5 IFNKDNIKQAAQLLAQGELVAFPTETVYGLGADATNEEAVKNVYRAKGRPSDNPLIVTVA 64 Query: 66 DISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 D +M+KK+ + P L FWPGPLTL+L + + T L TA FR P Sbjct: 65 DEAMMKKYVTEIPADAQKLIDHFWPGPLTLIL-FVKEGALPDAVTGGLPTAAFRCPQDPL 123 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 T +LI+T P+ PSAN S + S T +H+ + +I IID G +KIGLESTI+++ Sbjct: 124 TNELIQTLARPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDNGPTKIGLESTIIDL 182 Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 ++ V +LRPG + + L + ++ + V P++PGM HYAP S V Sbjct: 183 SVDQPV-VLRPGEITPDELSEVLHKKVLLNKGTVQTKDVPKAPGMKYRHYAPSSPVY--- 238 Query: 241 IHVNPREALIRFGNVP-IKNIENAIISLNLSKTGK---------LKEAAFNLFNYMKIAD 290 I +P + F +P ++ A ++ NL G + EAA NLF ++ D Sbjct: 239 IVDDPAD----FAYIPHDSSVGVAALADNLHDLGDADSFSLGVSIDEAAHNLFGALRYFD 294 Query: 291 -DSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + +I + A NRL +AA+ Sbjct: 295 SNEQIKTIYVQGFAKGNISAAYMNRLNKAAS 325 >gi|251779596|ref|ZP_04822516.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083911|gb|EES49801.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 349 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 112/334 (33%), Positives = 176/334 (52%), Gaps = 25/334 (7%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D +++A + + G +A PTETVYGL D+ N A+++++ K RP NPLI HV+ Sbjct: 14 DEEKIKEAAKVIKDGGIVAFPTETVYGLGSDALNEDAVKKIFIAKGRPQDNPLIVHVASK 73 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 ++ + ++ L +WPGPLTL+L S I +++A+L T R+P K Sbjct: 74 NIQSLVEDIPDIAQKLIDKYWPGPLTLILKKKSI--IPNITSADLDTIGIRMPNNEIALK 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LIE +A PSAN SG+ S T+V+ + + ++ I+ G S IGLESTI++ Sbjct: 132 LIEMSNTVIAAPSANISGRPSPTDVERCI-EDLSGKVDCIVGGDKSNIGLESTILDCTVN 190 Query: 187 KKVRILRPGGLEIETLKRAIS-VELEYCVDETST----PQSPGMLKSHYAPRSQVRL--- 238 + +LRPGG+ +E LK + +E++ + + ST P++PGM HYAP+++V++ Sbjct: 191 PPL-VLRPGGITLEMLKEIDNRIEIDGAIMKKSTDDLKPKAPGMKYRHYAPKAKVKIISG 249 Query: 239 -RAIHVNPREALIRF-----GNVPIKNIE------NAIISLNLSKTGKLKEAAFNLFNYM 286 R + + ++ + V I IE N I + L L A NLF + Sbjct: 250 ERKKTIEKMKEMVDYYIDNNKKVCILTIEENEKEYNKGIKVVLGSRKNLLMVAQNLFESL 309 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + DD GA I + G+GIAI NRL +AA Sbjct: 310 RKCDDLGADIILAEAYEEKGVGIAIMNRLNKAAG 343 >gi|309803187|ref|ZP_07697284.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LactinV 11V1-d] gi|309805675|ref|ZP_07699716.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LactinV 09V1-c] gi|309806328|ref|ZP_07700341.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LactinV 03V1-b] gi|309809899|ref|ZP_07703747.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners SPIN 2503V10-D] gi|308164695|gb|EFO66945.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LactinV 11V1-d] gi|308165035|gb|EFO67277.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LactinV 09V1-c] gi|308167312|gb|EFO69478.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LactinV 03V1-b] gi|308169687|gb|EFO71732.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners SPIN 2503V10-D] Length = 331 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 112/331 (33%), Positives = 170/331 (51%), Gaps = 26/331 (7%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I + + +++A + L G +A PTETVYGL D+ N A++ +Y K RP+ NPLI V+ Sbjct: 5 IFNKDNIKQAAQLLAQGELVAFPTETVYGLGADATNEEAVKNVYRAKGRPSDNPLIVTVA 64 Query: 66 DISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 D +M+KK+ + P L FWPGPLTL+L + + T L TA FR P Sbjct: 65 DEAMMKKYVTEIPADAQKLIDHFWPGPLTLIL-FVKEGALPDAVTGGLPTAAFRCPQDPL 123 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 T +LI+T P+ PSAN S + S T +H+ + +I IID G +KIGLESTI+++ Sbjct: 124 TNELIQTLARPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDNGPTKIGLESTIIDL 182 Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 ++ V +LRPG + + L + ++ + V P++PGM HYAP S V Sbjct: 183 SVDQPV-VLRPGEITPDELSEVLHKKVLLNKGTVQTKDVPKAPGMKYRHYAPSSPVY--- 238 Query: 241 IHVNPREALIRFGNVP-IKNIENAIISLNLSKTGK---------LKEAAFNLFNYMKIAD 290 I +P + F +P ++ A ++ NL G + EAA NLF ++ D Sbjct: 239 IVDDPAD----FAYIPHDSSVGVAALADNLHDLGDADSFSLGVSIDEAAHNLFGALRYFD 294 Query: 291 -DSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + +I + A NRL +AA+ Sbjct: 295 SNEQIKTIYVQGFAKGNISAAYMNRLNKAAS 325 >gi|302392964|ref|YP_003828784.1| translation factor SUA5 [Acetohalobium arabaticum DSM 5501] gi|302205041|gb|ADL13719.1| translation factor SUA5 [Acetohalobium arabaticum DSM 5501] Length = 351 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 117/346 (33%), Positives = 174/346 (50%), Gaps = 35/346 (10%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 ++ ++ D NA+ + L G +A PTETVYGL ++ + A+ +++ K RPA NPLI Sbjct: 8 RLFNLDDRNAISECSSILTDGGLVAFPTETVYGLGANALDAEAVNKIFTAKGRPADNPLI 67 Query: 62 CHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRV 119 H++ +S + K P + L+ FWPGPLTLV L +I P ++T L T R+ Sbjct: 68 VHIASLSQLDKLVLKVPNQVKLLSDRFWPGPLTLV---LKKKEIVPDITTGGLDTIAVRL 124 Query: 120 PC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P L+ P+A PSAN SG+ S T +H++ + + I IIDGG + +G+ES Sbjct: 125 PDHKVALDLLNRCQLPVAAPSANLSGRPSPTLAQHVV-TDLGGRIEAIIDGGQTGVGVES 183 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKR---------AISVELEYCVDETSTPQSPGMLKSH 229 T++++ E + +LRPGG+ + L A+ ELE E + +PGM H Sbjct: 184 TVISL-VEDRPTLLRPGGITYQELTEVLGEVDIDSAVKAELE---SENKSALAPGMKYKH 239 Query: 230 YAPRSQVRL------RAIHVNPR---EALIRFGNVPIKNIE---NAIISLNLSKTG---K 274 Y+P + V L R H + E L V I E N + + G K Sbjct: 240 YSPEADVILVEGEAERIAHKITKLADEYLAEGYQVGIMATEENSNFYTAGQVQVMGSRDK 299 Query: 275 LKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 L + NLF ++ DDSG I + N GLG+AI NRL +AA Sbjct: 300 LSVISANLFRLLRSFDDSGVDIILIEGVSNQGLGLAIMNRLRKAAG 345 >gi|228911164|ref|ZP_04074970.1| hypothetical protein bthur0013_53040 [Bacillus thuringiensis IBL 200] gi|228848527|gb|EEM93375.1| hypothetical protein bthur0013_53040 [Bacillus thuringiensis IBL 200] Length = 346 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 112/325 (34%), Positives = 168/325 (51%), Gaps = 21/325 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++A + L +A PTETVYGL ++ + AI +++E K RP+ NPLI H+ S + Sbjct: 21 LQEAAKLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQLD 80 Query: 72 KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P++ L FWPGPLT++L I TA L T R+P LIE Sbjct: 81 GIVKEIPPVAEKLMAHFWPGPLTIILP--RKEGISERVTAGLNTVGVRMPDHPVALALIE 138 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+A PSANRSG+ S T H+ + +I I+DGG + +G+EST+++ C V Sbjct: 139 EANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVID--CTSPV 195 Query: 190 -RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPR--------SQVRL 238 ILRPGG+ E L+ I +V L+ + DE P+SPGM +HYAP+ S+ + Sbjct: 196 PTILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255 Query: 239 RAIHVNPREALIRFG---NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 + + +E + G +++ NA + L+ L A L++ ++ D S Sbjct: 256 QQLVDGKKEEGFKVGVLTTEEYQHVYNADVILSCGVRSDLASVATKLYDVLRTFDASEVD 315 Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320 I S N G+G AI NRL +AA Sbjct: 316 VIFSESFSNEGIGNAIMNRLTKAAG 340 >gi|295697767|ref|YP_003591005.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus tusciae DSM 2912] gi|295413369|gb|ADG07861.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus tusciae DSM 2912] Length = 359 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 109/335 (32%), Positives = 167/335 (49%), Gaps = 29/335 (8%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 A+ +A +FL G +A PTETVYGL ++ +P A+ ++Y K RP NPLI H+++ V Sbjct: 23 AILEAADFLRRGEAVAFPTETVYGLGANALDPAAVDKIYFAKGRPGDNPLIVHIAERRQV 82 Query: 71 KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 A + P + L + FWPGPLT++L + + +T L T R+P ++ Sbjct: 83 DDLAEEIFPAAARLMEAFWPGPLTVILP--AADRVPRRTTGGLDTVAIRMPAHPVAAAIL 140 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 G P+A PSANRSG+ S T K + + IPL++DGG + IG+ESTI+ + Sbjct: 141 RVAGIPVAAPSANRSGRPSPTTAKDVW-EDLAGRIPLLVDGGPAGIGVESTIIGWPQGRP 199 Query: 189 VRILRPGGLEIETLKRAIS--VELEYCVDET-STPQSPGMLKSHYAPRSQVRLRAIHVNP 245 V ILRPGG+ E L+ + VEL+ + P +PGM HYAP+ Q+ L ++ Sbjct: 200 V-ILRPGGISPEELQDVLGEPVELDDSWKASVDRPLAPGMKYRHYAPKGQLYLLRGDLDA 258 Query: 246 REALI------------RFGNVPIKNIEN------AIISLNLSKTGKLKEAAFNLFNYMK 287 A I R G + + A+++ + L A L++ ++ Sbjct: 259 ARAEIVRRATADHAAGRRVGVLTTAEGQGVYPAFCAVVACGTRR--DLATVAAGLYSALR 316 Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 D G + P G+G A+ NRL +AA R Sbjct: 317 SFDHLGCEVMYAEPFPPEGIGWAVLNRLIKAAGHR 351 >gi|291486279|dbj|BAI87354.1| hypothetical protein BSNT_05644 [Bacillus subtilis subsp. natto BEST195] Length = 346 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 112/333 (33%), Positives = 178/333 (53%), Gaps = 22/333 (6%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 T+ + +A L +A PTETVYGL +++N A++++YE K RP+ NPLI H++D Sbjct: 16 TNDPQIAQAAALLRENEVVAFPTETVYGLGANAKNTDAVKKIYEAKGRPSDNPLIVHIAD 75 Query: 67 ISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 IS ++ P L K FWPG LTL+L + P TA L T R+P Sbjct: 76 ISQLEDLTGPAPEKAKTLMKRFWPGALTLILPCKPGA-LSPRVTAGLDTVAIRMPDHPLA 134 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 LI G P+A PSAN SG+ S T +H+ + + I I+DGG + IG+EST+++ Sbjct: 135 LALIRESGLPIAAPSANLSGKPSPTKAEHV-AHDLDGRIAGIMDGGPTGIGVESTVLSCA 193 Query: 185 CEKKVRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV------ 236 + V +LRPGG+ E ++ I + ++ + D+ P SPGM +HYAP + + Sbjct: 194 DDIPV-LLRPGGITKEQIEAVIGPIHVDKGLSDQNEKPISPGMKYTHYAPTAPLAICEGS 252 Query: 237 --RLRAIHVNPREALIRFGNVPIKNIENA-IISLNLSKT----GKLKEAAFNLFNYMKIA 289 R++ + ++ R G + + ENA + S + K+ +L+ A L++ ++ Sbjct: 253 PERIQHLIQEYQQGGRRVGVLTTE--ENAGVYSADYVKSCGRRAQLETVAAGLYDALRSF 310 Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 D++ I S P+ G+G+AI NRL +AA R Sbjct: 311 DENKVDLIISESFPDTGVGLAIMNRLMKAAGGR 343 >gi|331002522|ref|ZP_08326040.1| hypothetical protein HMPREF0491_00902 [Lachnospiraceae oral taxon 107 str. F0167] gi|330410338|gb|EGG89772.1| hypothetical protein HMPREF0491_00902 [Lachnospiraceae oral taxon 107 str. F0167] Length = 366 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 109/339 (32%), Positives = 169/339 (49%), Gaps = 36/339 (10%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A + + +G +A PTETVYGL ++ A +++Y K RP+ NPLI H+S V Sbjct: 25 IKEAADIIRSGGLVAFPTETVYGLGANALMSEAAKKIYAAKGRPSDNPLIVHISKTEDVN 84 Query: 72 KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129 A P + LA+ FWPGP+T+VL S I ++ L T R+P + LIE Sbjct: 85 NIAREIPEIFYKLAECFWPGPMTVVLKKRSI--IPDDTSGGLDTVAVRLPDNNIARALIE 142 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+A PSAN SG+ S T H+ + I +IIDGG IG+ESTIV++ + Sbjct: 143 VSKVPIAAPSANTSGRPSPTRASHVF-DDMDGRIDMIIDGGTVGIGVESTIVDLTGDIPT 201 Query: 190 RILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAP------------ 232 +LRPG + E L+ I +E+ + P++PGM HYAP Sbjct: 202 -LLRPGAVTFEMLREVCTEVDIDPAIEHLLASGEAPKAPGMKYKHYAPKADMKMLKGNEA 260 Query: 233 -----------RSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFN 281 +S+++ + V+ A++ + N + I L+L +K A N Sbjct: 261 AVLDYLKKEISKSEIKTAILTVDEHRAVLE--KIIEDNKKENIKLLSLGSLKDMKTVAHN 318 Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 LF+ ++ D+ G S+I S G+G AI NRL++A+ Sbjct: 319 LFDVLRKCDELGVSTILSESFDESGIGRAIMNRLKKASG 357 >gi|303234993|ref|ZP_07321617.1| Sua5/YciO/YrdC/YwlC family protein [Finegoldia magna BVS033A4] gi|302493848|gb|EFL53630.1| Sua5/YciO/YrdC/YwlC family protein [Finegoldia magna BVS033A4] Length = 342 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 107/329 (32%), Positives = 167/329 (50%), Gaps = 27/329 (8%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 AL KA E + G +A PTETVYGL + + A ++++++K+R NPLI HV++ MV Sbjct: 16 ALEKAAELIKNGSVVAFPTETVYGLGANGLDEEACKKIFDVKRRKRDNPLILHVTNEDMV 75 Query: 71 KKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 K +S + L WPGPLT++ + ++ + + T R P + LI Sbjct: 76 KNLSSEITEDQKKLMDNLWPGPLTIIFK--KSDKVNDVVSCGGDTVAIRNPSDEIARFLI 133 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 + G P+A PSAN+SG+ S TN + + S + EI +I+DGG IG+EST+V++ EK Sbjct: 134 DKSGCPIAAPSANKSGRPSPTNAQDVY-SDMQDEIEMILDGGSCNIGIESTVVDL-TEKP 191 Query: 189 VRILRPGGLEIETLKRAISVELEY---CVDETSTPQSPGMLKSHYAPRS----------- 234 ILRPG E L+ + E+ Y +D + P+SPG HYAP++ Sbjct: 192 YTILRPGFYTKEDLEEYLD-EVVYDKSLIDSNTIPKSPGQKYKHYAPKTKLIVIKGNMDN 250 Query: 235 -QVRLRAIHVNPREALIRFGNVPIKNI--ENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291 Q + ++ +N E KN+ EN I +SK A N+F Y++ D Sbjct: 251 IQNYVDSLGINTDEIGFILTEETAKNVNFENVKI---ISKRNDYLNFAHNIFTYLRELDK 307 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320 + + +GI+I NRL+++ A Sbjct: 308 FNYKLLICEGVNEQKMGISIMNRLKKSCA 336 >gi|227513057|ref|ZP_03943106.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus buchneri ATCC 11577] gi|227524272|ref|ZP_03954321.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus hilgardii ATCC 8290] gi|227083632|gb|EEI18944.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus buchneri ATCC 11577] gi|227088503|gb|EEI23815.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus hilgardii ATCC 8290] Length = 340 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 106/336 (31%), Positives = 171/336 (50%), Gaps = 28/336 (8%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I + + +A F+ G ++ PTETVYGL D+ N TA++++Y K RP+ NPLI VS Sbjct: 5 ILKKDQIEQAANFIKKGELVSFPTETVYGLGADATNETAVKKVYAAKGRPSDNPLIVTVS 64 Query: 66 DISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 + MVKK+ ++ + L K FWPG LT++ L + T L TA FR P Sbjct: 65 SVEMVKKYVDHINDDAQKLIKAFWPGSLTMIFKLKPNV-LSKAVTGGLNTAAFRFPQNQL 123 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 T LI G P+ PSAN SG+ S T +H+ + +I I+D G + +G+EST++++ Sbjct: 124 TLDLITKAGVPIVGPSANTSGKPSPTTAQHVY-HDLNGKIAAIVDDGPTTVGVESTVLDM 182 Query: 184 QCEKKVRILRPGGL---EIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 K ILRPG + +IE + ++ + V TP++PGM HYAP +QV + Sbjct: 183 SV-KTPSILRPGAVTKDDIEAVIHQNVIDELHHVGTDQTPKAPGMKYKHYAPNAQVYI-- 239 Query: 241 IHVNPREALIRFGN--------VPIKNIENAIISLNLSKTGKL-------KEAAFNLFNY 285 V+P ++ + V + +N I S++ ++ + A+ +LF Sbjct: 240 --VDPEDSWLDVAKWIENHPQPVGVMAFDNVISSIDWPMNAQIVTLGSNSRTASRDLFAD 297 Query: 286 MKIADDSGASSIAFS-SIPNHGLGIAINNRLERAAA 320 ++ D+ I F+ + G+ A NRL ++A Sbjct: 298 LREFDNHPEIKIIFTQGLKPSGIAEAYMNRLNKSAG 333 >gi|289523378|ref|ZP_06440232.1| Sua5/YciO/YrdC/YwlC family protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503070|gb|EFD24234.1| Sua5/YciO/YrdC/YwlC family protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 341 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 114/321 (35%), Positives = 166/321 (51%), Gaps = 22/321 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 ++ A E + G +A PTETVYGL ++ + +A+R ++ K RP NPLI HV+++ + Sbjct: 19 IKIAAEAIVKGKLVAFPTETVYGLGANALDESAVRGIFSAKGRPCDNPLIVHVANVESAE 78 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLST-ANLKTACFRVPCG-FTKKLIE 129 K A +L L + FWPGPLTLV + DI P +T L+T R+P LIE Sbjct: 79 KIAHTTSKALRLMERFWPGPLTLV---MKAKDIVPKATRGGLETVAVRMPAHPVALALIE 135 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G P+A PSAN SG+ S T+ + C + +I+D G + +G+EST+++V EK V Sbjct: 136 KSGVPIAAPSANTSGRPSPTDAGVVYDDLGCC-VDVILDTGPTDVGVESTVIDVTQEKVV 194 Query: 190 RILRPGGLEIETLKR-----AISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL-RAIHV 243 +LRPGGL +E ++ + EL E +SPG HYAPR +V L R Sbjct: 195 -LLRPGGLPVEAIEEFGEEVMLPDELGAGRAEDVKRKSPGTRYRHYAPRCRVVLWREGDD 253 Query: 244 NPREALIRFGNVPIK----NIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF 299 P E G + IK +I +I + L+ A LF M+ + G I Sbjct: 254 WPLERDEAVGYMGIKRPPLDISEKVILFD-----SLEHYARGLFMAMRYLEKKGVKVIVA 308 Query: 300 SSIPNHGLGIAINNRLERAAA 320 GLG+AI +RL RA++ Sbjct: 309 DYPVKEGLGLAIRDRLYRASS 329 >gi|86135055|ref|ZP_01053637.1| Putative translation factor (SUA5) [Polaribacter sp. MED152] gi|85821918|gb|EAQ43065.1| Putative translation factor (SUA5) [Polaribacter sp. MED152] Length = 318 Score = 154 bits (388), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 113/325 (34%), Positives = 169/325 (52%), Gaps = 17/325 (5%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 MSI S ++KA L+ +AIPTETVYGLA + + AI+ ++E K+RP NPLI H Sbjct: 1 MSII-SKDIQKAISILENEELVAIPTETVYGLAGNIFSEKAIKSIFETKQRPLFNPLIVH 59 Query: 64 VSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 VS I + K + P LA+ FWPG +TLVL +I L TA T R+P Sbjct: 60 VSGIDQLDKIVAEIPAKAKLLAEKFWPGSMTLVLK--KNPNIPDLITAGKSTVAVRIPNH 117 Query: 123 FTK-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 T +L+ PLA PSAN IS T +H+ + + + +++DGG K G+ESTI+ Sbjct: 118 KTTLELLSKLPFPLAAPSANPFNNISPTKPEHV-ARYFKESLEMVLDGGTCKNGIESTII 176 Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA- 240 + V I R G L +E ++ + + ++ P +PGML+ HYAP+++ L Sbjct: 177 GFNNNEPV-IYRLGALALEEIENVVG-PVSVMNEKEKNPDAPGMLQKHYAPKTKTILTTD 234 Query: 241 ------IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGA 294 + + ++ F N +A + LS + L+EAA NL++ M D Sbjct: 235 VKSEIEKYKTSKIGVLSFSTSFKNNAVDA--EIRLSTSNNLQEAASNLYDSMHQLDHLNL 292 Query: 295 SSIAFSSIPNHGLGIAINNRLERAA 319 I +P GLG ++N+RL+RAA Sbjct: 293 DIIIVEKLPEFGLGKSMNDRLKRAA 317 >gi|295112222|emb|CBL28972.1| Sua5/YciO/YrdC/YwlC family protein [Synergistetes bacterium SGP1] Length = 327 Score = 154 bits (388), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 102/315 (32%), Positives = 163/315 (51%), Gaps = 16/315 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +A E L +G +A PTETVYGL ++ NP A++ +Y K RP+ NPLI H+S + + Sbjct: 18 LARAAEVLRSGGLVAFPTETVYGLGANALNPEAVKGIYRAKGRPSDNPLILHLSRVEQAE 77 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPC-GFTKKLIE 129 VD + L + FWPGPLTLV L D+ P+ + L TA R+P LI+ Sbjct: 78 PLVCVDERARRLMRAFWPGPLTLV---LRARDVVPMEARGGLSTAALRMPSHPVASALID 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PLA PSAN SG+ S T+ + + + I +I+DGG +G+EST+++V E + Sbjct: 135 AVGFPLAAPSANVSGRPSPTDAETVW-RDLRGRIEMILDGGPVSVGIESTVIDVSEELPL 193 Query: 190 RILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREAL 249 +LRPGG+ E ++ + L D S+ +SPG HYAP + +R H + Sbjct: 194 -LLRPGGMPAEEIEAFLGEPLRRP-DGRSSRRSPGTRYRHYAP--TIPVRVWHPEAPFEM 249 Query: 250 IRFGNVPIKNIENAIISLNLSKTGK------LKEAAFNLFNYMKIADDSGASSIAFSSIP 303 + ++ +++ ++ G+ ++ A LF+ + + G I P Sbjct: 250 AEMVGMELERWGFMGLAVPPARFGRVLRFESVENYARGLFSGFRALEAEGLLGIVAEWPP 309 Query: 304 NHGLGIAINNRLERA 318 G+G+ + +R+ RA Sbjct: 310 AAGVGLGLRDRIRRA 324 >gi|194016307|ref|ZP_03054921.1| YwlC [Bacillus pumilus ATCC 7061] gi|194011780|gb|EDW21348.1| YwlC [Bacillus pumilus ATCC 7061] Length = 350 Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 112/330 (33%), Positives = 170/330 (51%), Gaps = 20/330 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A L +A PTETVYGL +++ A+ ++YE K RP+ NPLI H+++I + Sbjct: 22 IEQAALLLQQNEVVAFPTETVYGLGANAKETEAVMKIYEAKGRPSDNPLIVHIAEIEQLH 81 Query: 72 KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + A ++ L FWPG LT+VL T + TA L T R+P +LI Sbjct: 82 EFAQIESEKAKALMDAFWPGALTIVLPCKPGT-LSKQVTAGLSTVGVRMPDHPIALELIR 140 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 T G P+A PSANRSG+ S T H+ +S + I I+DGG + IG+EST+V+ E V Sbjct: 141 TAGLPIAAPSANRSGKPSPTQADHV-ASDLDGRIAGIVDGGSTGIGVESTVVSCVDEIPV 199 Query: 190 RILRPGGLEIETLKRAI-SVELE-YCVDETSTPQSPGMLKSHYAPRSQVRL--------- 238 ILRPGG+ E L+ + +V ++ + P SPGM +HYAP +++ L Sbjct: 200 -ILRPGGITKEALEEVVGTVSIDPGLTKKDEAPVSPGMKYTHYAPEAKMYLFFGSDEEMQ 258 Query: 239 RAIHVNPREALIRFGNVPI---KNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 R I E + G + K++ A + + K + A NL+ ++ D++ Sbjct: 259 RHIQTYQAEGF-KVGVLTTEEKKSLFAADVVFSCGWREKPETIAANLYRVLRQFDETDVD 317 Query: 296 SIAFSSIPNHGLGIAINNRLERAAAPRNQS 325 I + G+G AI NRL++AA R S Sbjct: 318 VIISEAFSEQGVGSAIMNRLQKAAGGRTLS 347 >gi|188589112|ref|YP_001919885.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum E3 str. Alaska E43] gi|188499393|gb|ACD52529.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum E3 str. Alaska E43] Length = 349 Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 112/334 (33%), Positives = 176/334 (52%), Gaps = 25/334 (7%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D +++A + + G +A PTETVYGL D+ N A+++++ K RP NPLI HV+ Sbjct: 14 DEEKIKEAAKVIKDGGIVAFPTETVYGLGSDALNEDAVKKIFIAKGRPQDNPLIVHVASK 73 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 ++ + ++ L +WPGPLTL+L S I +++A+L T R+P K Sbjct: 74 NIQSLVEDIPDIAQKLIDKYWPGPLTLILKKKSI--IPNITSADLDTIGIRMPNNEIALK 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LIE +A PSAN SG+ S T+V+ + + ++ I+ G S IGLESTI++ Sbjct: 132 LIEMSNTVIAAPSANISGRPSPTDVERCI-EDLSGKVDCIVGGDKSNIGLESTILDCTVN 190 Query: 187 KKVRILRPGGLEIETLKRAIS-VELEYCVDETST----PQSPGMLKSHYAPRSQVRL--- 238 + +LRPGG+ +E LK + +E++ + + ST P++PGM HYAP+++V++ Sbjct: 191 PPL-VLRPGGITLEMLKDIDNRIEIDGAIMKKSTDDLKPKAPGMKYRHYAPKAKVKIISG 249 Query: 239 -RAIHVNPREALIRF-----GNVPIKNIE------NAIISLNLSKTGKLKEAAFNLFNYM 286 R + + ++ + V I IE N I + L L A NLF + Sbjct: 250 ERKKTIEKMKEMVDYYIDNNKKVCILTIEENEKEYNKGIKVVLGSRENLLMVAQNLFESL 309 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + DD GA I + G+GIAI NRL +AA Sbjct: 310 RKCDDLGADIILAEAYEEKGVGIAIMNRLNKAAG 343 >gi|313113833|ref|ZP_07799400.1| Sua5/YciO/YrdC/YwlC family protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310623860|gb|EFQ07248.1| Sua5/YciO/YrdC/YwlC family protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 358 Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 110/341 (32%), Positives = 173/341 (50%), Gaps = 28/341 (8%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +I+ +D ++ KA L G +A+PTETVYG+A D+RN A+++++ K RP NPLI Sbjct: 22 EILPASDEKSIEKAAALLQNGELVALPTETVYGIAADARNGEAVKKIFVAKGRPQDNPLI 81 Query: 62 CHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 HV+ M+ S P L F PGPLT+++ ++ A L T R+P Sbjct: 82 VHVTGPEMLPGLVSEVPERAQLLMAAFCPGPLTIIMP--RGPEVAAECCAGLDTVGIRMP 139 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + +IE G A PSAN SG+ S TN + + + + +PLI+DGG +G+EST Sbjct: 140 SHPVARAVIEKSGCAFAAPSANLSGKPSPTNAQDVF-TDMDGRLPLILDGGECDVGVEST 198 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYC------VDETSTPQSPGMLKSHYAPR 233 +V+V EK + RPG + +E L+RA+ E+E + E + +SPGM HYAP+ Sbjct: 199 VVSVVGEKPT-LFRPGHITLEDLERALGEEVEVSKAILEKLPEGAVVRSPGMKYKHYAPK 257 Query: 234 SQVRLR-----------AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNL 282 + V L H + + F K + + + G + A ++ Sbjct: 258 ADVTLLDGTFEQFKAYVDAHAEQNPSCLCFTGEAEK---LGVPCVEYGREGDGADQAKHI 314 Query: 283 FNYMKIADDSGASSIAFSSIPN-HGLGIAINNRLERAAAPR 322 F ++ D+ G ++ ++ P GL +A+ NRL RAAA R Sbjct: 315 FRCLRALDEQG-DAVVYARCPQKDGLSMAVYNRLIRAAAFR 354 >gi|116491553|ref|YP_811097.1| translation factor SUA5 [Oenococcus oeni PSU-1] gi|290891158|ref|ZP_06554220.1| hypothetical protein AWRIB429_1610 [Oenococcus oeni AWRIB429] gi|116092278|gb|ABJ57432.1| translation factor SUA5 [Oenococcus oeni PSU-1] gi|290479122|gb|EFD87784.1| hypothetical protein AWRIB429_1610 [Oenococcus oeni AWRIB429] Length = 337 Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 116/343 (33%), Positives = 179/343 (52%), Gaps = 35/343 (10%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M ++ T A+ +A + +G +A PTETVYG+ D+ A+ +++ KKRP NPL Sbjct: 1 MTLVLKTSEKAIAEAANIMASGGVVAFPTETVYGIGADATKRDAVEKVFAAKKRPHDNPL 60 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRV 119 I VS+ M + A +D + L + FWPG LT++L L+ DI P + TA L TA FR Sbjct: 61 IVTVSNAEMASRFAKLDWRAEKLIENFWPGSLTMILPLID-QDILPDNVTAGLLTAAFRN 119 Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T+ LI +P+ PSAN S + S T +H+L + I +ID G ++IG+ES Sbjct: 120 PKNDVTRHLITLLNNPIVGPSANLSTKPSPTTAEHVL-HDMDGRIDAVIDDGPTEIGVES 178 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETS--------TPQSPGMLKSHY 230 TIV++ K+ ILRPG + T + SV E +D T P++PGM HY Sbjct: 179 TIVDLSV-KQATILRPGAV---TADQVSSVLGEKVIDPTGPISLAANIAPKAPGMKYRHY 234 Query: 231 APR------SQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSK--TGKLKEAAFN- 281 AP +Q L+ + ++ N + +E+++ L L + + L E A + Sbjct: 235 APSKAVVIFNQTDLKDLKQQLKK------NDAVVALEDSLNQLKLDRRHSWSLGETADSA 288 Query: 282 ---LFNYMKIADDS-GASSIAFSSIPNHGLGIAINNRLERAAA 320 LF+ ++ DD +I S+P+ G+G A NRLE++A Sbjct: 289 TEELFSALRFFDDQKDIQTIYVESLPSEGIGEAYMNRLEKSAG 331 >gi|218233574|ref|YP_002370102.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus B4264] gi|218161531|gb|ACK61523.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus B4264] Length = 346 Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 111/325 (34%), Positives = 170/325 (52%), Gaps = 21/325 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++A + L +A PTETVYGL ++ + AI +++E K RP+ NPLI H+ S + Sbjct: 21 LQEAAKLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQLD 80 Query: 72 KHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + + P++ L FWPGPLT++L I TA L T R+P LIE Sbjct: 81 GIVTEIPPVAEKLMAHFWPGPLTIILP--RKEGISEKVTAGLNTVGVRMPDHPIALALIE 138 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+A PSANRSG+ S T H+ + +I I+DGG + +G+EST+++ C V Sbjct: 139 EANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVID--CTSTV 195 Query: 190 -RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPR--------SQVRL 238 ILRPGG+ E L+ I +V L+ + DE P+SPGM +HYAP+ S+ + Sbjct: 196 PTILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255 Query: 239 RAIHVNPREALIRFGNVPIKNIE---NAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 + + ++ + G + + + +A + L+ L A L++ ++ D S Sbjct: 256 QHLVDEKKKEGFKVGVLTTEEYQYVYSADVILSCGVRSDLASVATKLYDVLRTFDASEVD 315 Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320 I S PN G+G AI NRL +AA Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAG 340 >gi|319951527|ref|ZP_08025332.1| Sua5/YciO/YrdC/YwlC family protein [Dietzia cinnamea P4] gi|319434824|gb|EFV90139.1| Sua5/YciO/YrdC/YwlC family protein [Dietzia cinnamea P4] Length = 339 Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 104/314 (33%), Positives = 168/314 (53%), Gaps = 26/314 (8%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-L 83 +A PTETVYGL D+ N A+R+++E+K+RP +PLI H++D + + P L Sbjct: 2 VAFPTETVYGLGADAENAEAVRQVFEVKQRPVTHPLIVHLADPGQLGDWVTEIPGPARVL 61 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142 A+ FWPGPLTLVL + I P+ T T RVP ++L+ +G +A PSANR Sbjct: 62 AECFWPGPLTLVLP--RSPRIPPVVTGGCDTVAVRVPHHPVARQLLTAFGGAIAAPSANR 119 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202 G +S T+ H+ + + + LI+DG +G+ESTI++V ++ + +LRPG + ++ L Sbjct: 120 FGAVSCTSADHV-ADELGPAVDLILDGRPCPVGIESTIIDVTGDEPI-LLRPGAVGVDDL 177 Query: 203 KRAISVELEYCVDETSTP--QSPGMLKSHYAPRSQVRL-----------RAIHVNPREAL 249 RA+ + TS+P ++PG SHY+PR++V L R R + Sbjct: 178 ARALGRPIHTA---TSSPGRRAPGQHPSHYSPRARVILVEESEVVDEARRQQSHGRRIGV 234 Query: 250 IRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH-GLG 308 +R I + + + L + A +L+ ++ D + +S+P G+G Sbjct: 235 LRPPATTASTITGNALVIEVPTA--LGDYARDLYRLLREFDRHDCE-VVIASLPTRAGVG 291 Query: 309 IAINNRLERAAAPR 322 +AI +RL RA+APR Sbjct: 292 LAIADRLTRASAPR 305 >gi|118586288|ref|ZP_01543743.1| translational factor, SUA5 family [Oenococcus oeni ATCC BAA-1163] gi|118433283|gb|EAV39994.1| translational factor, SUA5 family [Oenococcus oeni ATCC BAA-1163] Length = 337 Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 116/343 (33%), Positives = 179/343 (52%), Gaps = 35/343 (10%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M ++ T A+ +A + +G +A PTETVYG+ D+ A+ +++ KKRP NPL Sbjct: 1 MTLVLKTSEKAIAEAANIMASGGVVAFPTETVYGIGADATKRDAVEKVFAAKKRPHDNPL 60 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRV 119 I VS+ M + A +D + L + FWPG LT++L L+ DI P + TA L TA FR Sbjct: 61 IVTVSNAEMAARFAKLDWRAEKLIENFWPGSLTMILPLID-QDILPDNVTAGLLTAAFRN 119 Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T+ LI +P+ PSAN S + S T +H+L + I +ID G ++IG+ES Sbjct: 120 PKNDVTRHLITLLNNPIVGPSANLSTKPSPTTAEHVL-HDMDGRIDAVIDDGPTEIGVES 178 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETS--------TPQSPGMLKSHY 230 TIV++ K+ ILRPG + T + SV E +D T P++PGM HY Sbjct: 179 TIVDLSV-KQATILRPGAV---TADQVSSVLGEKVIDPTGPISLAANIAPKAPGMKYRHY 234 Query: 231 APR------SQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSK--TGKLKEAAFN- 281 AP +Q L+ + ++ N + +E+++ L L + + L E A + Sbjct: 235 APSKAVVIFNQTDLKDLKQQLKK------NDAVVALEDSLNQLKLDRRHSWSLGETADSA 288 Query: 282 ---LFNYMKIADDS-GASSIAFSSIPNHGLGIAINNRLERAAA 320 LF+ ++ DD +I S+P+ G+G A NRLE++A Sbjct: 289 TEELFSALRFFDDQKDIQTIYVESLPSEGIGEAYMNRLEKSAG 331 >gi|30023356|ref|NP_834987.1| SUA5 protein [Bacillus cereus ATCC 14579] gi|229112739|ref|ZP_04242272.1| hypothetical protein bcere0018_49780 [Bacillus cereus Rock1-15] gi|229130575|ref|ZP_04259531.1| hypothetical protein bcere0015_50080 [Bacillus cereus BDRD-Cer4] gi|229147866|ref|ZP_04276207.1| hypothetical protein bcere0012_49890 [Bacillus cereus BDRD-ST24] gi|296505750|ref|YP_003667450.1| integral membrane protein [Bacillus thuringiensis BMB171] gi|29898917|gb|AAP12188.1| SUA5 protein [Bacillus cereus ATCC 14579] gi|228635516|gb|EEK92005.1| hypothetical protein bcere0012_49890 [Bacillus cereus BDRD-ST24] gi|228652914|gb|EEL08796.1| hypothetical protein bcere0015_50080 [Bacillus cereus BDRD-Cer4] gi|228670720|gb|EEL26031.1| hypothetical protein bcere0018_49780 [Bacillus cereus Rock1-15] gi|296326802|gb|ADH09730.1| integral membrane protein [Bacillus thuringiensis BMB171] Length = 346 Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 111/325 (34%), Positives = 169/325 (52%), Gaps = 21/325 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++A + L +A PTETVYGL ++ + AI +++E K RP+ NPLI H+ S + Sbjct: 21 LQEAAKLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQLD 80 Query: 72 KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P++ L FWPGPLT++L I TA L T R+P LIE Sbjct: 81 GIVKEIPPVAEKLMAHFWPGPLTIILP--RKEGISEKVTAGLNTVGVRMPDHPIALALIE 138 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+A PSANRSG+ S T H+ + +I I+DGG + +G+EST+++ C V Sbjct: 139 EANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVID--CTSTV 195 Query: 190 -RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPR--------SQVRL 238 ILRPGG+ E L+ I +V L+ + DE P+SPGM +HYAP+ S+ + Sbjct: 196 PTILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255 Query: 239 RAIHVNPREALIRFG---NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 + + ++ + G +++ +A + L+ L A L++ ++ D S Sbjct: 256 QHLVDEKKKEGFKVGVLTTEEYQHVYSADVILSCGVRSDLASVATKLYDVLRTFDASEVD 315 Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320 I S PN G+G AI NRL +AA Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAG 340 >gi|229050996|ref|ZP_04194545.1| hypothetical protein bcere0027_49490 [Bacillus cereus AH676] gi|228722373|gb|EEL73769.1| hypothetical protein bcere0027_49490 [Bacillus cereus AH676] Length = 346 Score = 153 bits (386), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 111/325 (34%), Positives = 169/325 (52%), Gaps = 21/325 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++A + L +A PTETVYGL ++ + AI +++E K RP+ NPLI H+ S + Sbjct: 21 LQEAAKLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQLD 80 Query: 72 KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P++ L FWPGPLT++L I TA L T R+P LIE Sbjct: 81 GIVKEIPPVAEKLMAHFWPGPLTIILP--RKEGISEKVTAGLNTVGVRMPDHPIALALIE 138 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+A PSANRSG+ S T H+ + +I I+DGG + +G+EST+++ C V Sbjct: 139 EANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVID--CTSTV 195 Query: 190 -RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPR--------SQVRL 238 ILRPGG+ E L+ I +V L+ + DE P+SPGM +HYAP+ S+ + Sbjct: 196 PTILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255 Query: 239 RAIHVNPREALIRFG---NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 + + ++ + G +++ +A + L+ L A L++ ++ D S Sbjct: 256 QHLVDEKKKEGFKVGVLTTEEYQHVYSADVILSCGVRSDLASVATKLYDVLRTFDASEVD 315 Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320 I S PN G+G AI NRL +AA Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAG 340 >gi|302191109|ref|ZP_07267363.1| hypothetical protein LineA_03797 [Lactobacillus iners AB-1] gi|312873862|ref|ZP_07733905.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LEAF 2052A-d] gi|325913035|ref|ZP_08175408.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners UPII 60-B] gi|311090644|gb|EFQ49045.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LEAF 2052A-d] gi|325477715|gb|EGC80854.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners UPII 60-B] Length = 331 Score = 153 bits (386), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 112/331 (33%), Positives = 169/331 (51%), Gaps = 26/331 (7%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I + + +++A + L G +A PTETVYGL D+ N A++ +Y K RP+ NPLI V+ Sbjct: 5 IFNKDNIKQAAQLLAQGELVAFPTETVYGLGADATNEEAVKNVYRAKGRPSDNPLIVTVA 64 Query: 66 DISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 D +M+KK+ + P L FWPGPLTL+L + + T L TA FR P Sbjct: 65 DEAMMKKYVTEIPADAQKLIDHFWPGPLTLIL-FVKEGALPDAVTGGLPTAAFRCPQDPL 123 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 T +LI T P+ PSAN S + S T +H+ + +I IID G +KIGLESTI+++ Sbjct: 124 TNELIHTLARPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDNGPTKIGLESTIIDL 182 Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 ++ V +LRPG + + L + ++ + V P++PGM HYAP S V Sbjct: 183 SVDQPV-VLRPGEITPDELSEVLHKKVLLNKGTVQTKDVPKAPGMKYRHYAPSSPVY--- 238 Query: 241 IHVNPREALIRFGNVP-IKNIENAIISLNLSKTGK---------LKEAAFNLFNYMKIAD 290 I +P + F +P ++ A ++ NL G + EAA NLF ++ D Sbjct: 239 IVDDPAD----FAYIPHDSSVGVAALADNLHDLGDADSFSLGVSIDEAAHNLFGALRYFD 294 Query: 291 -DSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + +I + A NRL +AA+ Sbjct: 295 SNEQIKTIYVQGFAKGNISAAYMNRLNKAAS 325 >gi|226228996|ref|YP_002763102.1| hypothetical protein GAU_3590 [Gemmatimonas aurantiaca T-27] gi|226092187|dbj|BAH40632.1| hypothetical protein [Gemmatimonas aurantiaca T-27] Length = 363 Score = 153 bits (386), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 101/259 (38%), Positives = 137/259 (52%), Gaps = 30/259 (11%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + L A + L AG +A PTETVYGL ++ +P A+ R+Y K RPA NP+I HV+ Sbjct: 12 DPDVLADAAQILRAGGLVAFPTETVYGLGANALDPDAVARIYAAKGRPAWNPVIMHVASA 71 Query: 68 SMVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 M AS P+S LA+ WPGPLTLV+ + + +A T RVP Sbjct: 72 DMAAGFASHWPISAARLAERCWPGPLTLVVP--RADHVPDIVSAGGDTVALRVPSHPVAL 129 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LI G P+A PSANR Q+S T +H++ +S+ + L++DGG S +G+EST+V+ Sbjct: 130 ALITAAGCPIAAPSANRFTQVSPTTAQHVV-ASLGDRVGLVLDGGPSTVGIESTVVDCTG 188 Query: 186 EKKVRILRPGGLEIETLK---------------RAISVELEYCVDETST---------PQ 221 + V ILRPG L ETL+ RA+ + E ST P+ Sbjct: 189 D-TVTILRPGMLGRETLEAALDGLGVAVRHAAPRAVPHAASQALAEASTHADDGTPAAPR 247 Query: 222 SPGMLKSHYAPRSQVRLRA 240 SPGM HYAPR+ V L A Sbjct: 248 SPGMADRHYAPRADVWLFA 266 >gi|321313245|ref|YP_004205532.1| putative ribosome maturation factor; RNA binding protein [Bacillus subtilis BSn5] gi|320019519|gb|ADV94505.1| putative ribosome maturation factor; RNA binding protein [Bacillus subtilis BSn5] Length = 346 Score = 153 bits (386), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 114/337 (33%), Positives = 180/337 (53%), Gaps = 30/337 (8%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 T+ + +A L +A PTETVYGL +++N A++++YE K RP+ NPLI H++D Sbjct: 16 TNDPQIAQAAALLRENEVVAFPTETVYGLGANAKNTDAVKKIYEAKGRPSDNPLIVHIAD 75 Query: 67 ISMVKKHASVDPLSLH-LAKLFWPGPLTLVL----DLLSTTDIHPLSTANLKTACFRVPC 121 IS ++ P L K FWPG LTL+L D LS P TA L+T R+P Sbjct: 76 ISQLEDLTGPAPEKAKTLMKRFWPGALTLILPCKPDALS-----PRVTAGLETVAIRMPD 130 Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 LI G P+A PSAN SG+ S T +H+ + + I I+DGG + IG+EST+ Sbjct: 131 HPLALALIRESGLPIAAPSANLSGKPSPTKAEHV-AHDLDGRIAGIMDGGPTGIGVESTV 189 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV-- 236 ++ + V +LRPGG+ E ++ I + ++ + D+ P SPGM +HYAP + + Sbjct: 190 LSCADDIPV-LLRPGGITKEQIEAVIGPIHVDKGLSDQNEKPISPGMKYTHYAPTAPLAI 248 Query: 237 ------RLRAIHVNPREALIRFGNVPIKNIENA-IISLNLSKT----GKLKEAAFNLFNY 285 ++ + ++ R G + + ENA + S + K+ +L+ A L++ Sbjct: 249 CEGSPEHIQHLIQEYQQGGRRVGVLTTE--ENAGVYSADYVKSCGRRAQLETVAAGLYDA 306 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 ++ D++ I S P+ G+G+AI NRL +AA R Sbjct: 307 LRSFDENKVDFIIAESFPDTGVGLAIMNRLMKAAGGR 343 >gi|110800830|ref|YP_696878.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens ATCC 13124] gi|168210129|ref|ZP_02635754.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens B str. ATCC 3626] gi|110675477|gb|ABG84464.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens ATCC 13124] gi|170711785|gb|EDT23967.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens B str. ATCC 3626] Length = 350 Score = 153 bits (386), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 109/336 (32%), Positives = 173/336 (51%), Gaps = 32/336 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L +A E + G A PTETVYGL ++ + A+++++ K RP NPLI H++D Sbjct: 14 DIKYLEEAAEIIKNGGIGAFPTETVYGLGANALDGEAVKKIFVAKGRPQDNPLIIHIADK 73 Query: 68 SMVKKH-ASVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPLSTANLKTACFRVPCG- 122 + K+ A + + L FWPGPLT++L D++S +++A L T R+P Sbjct: 74 KDIDKYVAEIPKYAQELMDKFWPGPLTIILKKKDIVSD-----VTSAGLDTVGVRMPNDE 128 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 KLIE G P+A PSAN SG+ S T+++ + + II S+IG+ESTIV+ Sbjct: 129 IALKLIELSGVPIAAPSANISGRPSPTDIER-CEEDLNGRVDFIIGAKKSEIGVESTIVD 187 Query: 183 VQCEKKVRILRPGGLEIETLKR-----AISVELEYCVDETSTPQSPGMLKSHYAPRSQVR 237 E + +LRPGG+ +E LK I + +D+ + P++PGM HYAP+++VR Sbjct: 188 ATGE-HLCVLRPGGITLEMLKDIDEGVYIDKAILTTLDKDTKPKAPGMKYKHYAPKAKVR 246 Query: 238 LRAIHVNP-----REALIRFGNVPIK----------NIENAIISLNLSKTGKLKEAAFNL 282 + +N +E + + + +K ++ N I +L L NL Sbjct: 247 MVQGPINKMVEKIKEIVHNYIDEDLKVGIMATDETISMYNEGIVKSLGTREDLTSVTKNL 306 Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERA 318 F ++ DD G I + LG+AI NRL+++ Sbjct: 307 FEMLRAFDDLGVDVIITEAFEEKDLGVAIMNRLKKS 342 >gi|154249397|ref|YP_001410222.1| Sua5/YciO/YrdC/YwlC family protein [Fervidobacterium nodosum Rt17-B1] gi|154153333|gb|ABS60565.1| Sua5/YciO/YrdC/YwlC family protein [Fervidobacterium nodosum Rt17-B1] Length = 331 Score = 153 bits (386), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 107/322 (33%), Positives = 163/322 (50%), Gaps = 27/322 (8%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 ACE L +G +A PTETVYGL + NP A+++++++K RPA NPLI HVS + ++ A Sbjct: 23 ACEVLKSGGLVAFPTETVYGLGATATNPEAVKKIFQVKGRPADNPLIVHVSSVDEIENIA 82 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133 + + + K PGP+T VL +I TA L+T R+P +KLI G Sbjct: 83 YLSEKYIDIIKKVTPGPITFVLK--KKENIPSEVTAGLETVGVRIPAHPVAQKLINCSG- 139 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 P+A PSANRSG+ S T+ ++ + + IID G G+ESTIV++ + V +LR Sbjct: 140 PIAAPSANRSGKPSPTDANAVI-EDLNGLVECIIDAGECAFGIESTIVDLTKDFPV-VLR 197 Query: 194 PGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFG 253 PG + +E L + V Y + E P +PGM HYAP + L + AL+ + Sbjct: 198 PGPITLEELTQLFGVVEFYQLKEGEKPLAPGMKYRHYAPEKHLELVD-----QSALLEYQ 252 Query: 254 NVP-------------IKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300 N I N +N I LSK + A NL+ + D + Sbjct: 253 NTDVLILCTKETKERLIPNAKNVYIIGELSKPYTI---AQNLYRSFRDIDKTNYKYAVIE 309 Query: 301 SIPNHGLGIAINNRLERAAAPR 322 +P +G+ +I NR+++A + + Sbjct: 310 KLPEYGIFFSIMNRIKKAVSKK 331 >gi|259501683|ref|ZP_05744585.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners DSM 13335] gi|315653746|ref|ZP_07906666.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners ATCC 55195] gi|259166968|gb|EEW51463.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners DSM 13335] gi|315489108|gb|EFU78750.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners ATCC 55195] Length = 338 Score = 153 bits (386), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 112/331 (33%), Positives = 169/331 (51%), Gaps = 26/331 (7%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I + + +++A + L G +A PTETVYGL D+ N A++ +Y K RP+ NPLI V+ Sbjct: 12 IFNKDNIKQAAQLLAQGELVAFPTETVYGLGADATNEEAVKNVYRAKGRPSDNPLIVTVA 71 Query: 66 DISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 D +M+KK+ + P L FWPGPLTL+L + + T L TA FR P Sbjct: 72 DEAMMKKYVTEIPADAQKLIDHFWPGPLTLIL-FVKEGALPDAVTGGLPTAAFRCPQDPL 130 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 T +LI T P+ PSAN S + S T +H+ + +I IID G +KIGLESTI+++ Sbjct: 131 TNELIHTLARPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDNGPTKIGLESTIIDL 189 Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 ++ V +LRPG + + L + ++ + V P++PGM HYAP S V Sbjct: 190 SVDQPV-VLRPGEITPDELSEVLHKKVLLNKGTVQTKDVPKAPGMKYRHYAPSSPVY--- 245 Query: 241 IHVNPREALIRFGNVP-IKNIENAIISLNLSKTGK---------LKEAAFNLFNYMKIAD 290 I +P + F +P ++ A ++ NL G + EAA NLF ++ D Sbjct: 246 IVDDPAD----FAYIPHDSSVGVAALADNLHDLGDADSFSLGVSIDEAAHNLFGALRYFD 301 Query: 291 -DSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + +I + A NRL +AA+ Sbjct: 302 SNEQIKTIYVQGFAKGNISAAYMNRLNKAAS 332 >gi|91772214|ref|YP_564906.1| translation factor SUA5 [Methanococcoides burtonii DSM 6242] gi|91711229|gb|ABE51156.1| SUA5-type translation factor [Methanococcoides burtonii DSM 6242] Length = 350 Score = 152 bits (385), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 111/330 (33%), Positives = 177/330 (53%), Gaps = 26/330 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +A + + G +A PTETVYGL ++ +P A++++++ K RPA NPLI HV+ Sbjct: 19 LTRAADIIKEGGIVAFPTETVYGLGANALDPDAVKKIFKAKGRPADNPLIVHVASKDQCN 78 Query: 72 KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 A ++ + L FWPGPLTL+L + ++T L T R+P + I Sbjct: 79 DLAKNISQTAFKLMDEFWPGPLTLILKAKKV--VPEITTGGLDTVGLRMPANEIALEFIR 136 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PLA PSAN SG+ S T+ +H+ + + +I IIDGG+ +IGLEST+V++ + Sbjct: 137 RSGTPLAAPSANTSGRPSPTSAEHV-TQDLEGKIDAIIDGGMVEIGLESTVVDITGDIPA 195 Query: 190 RILRPGGLEIETLKR-AISVELEY---CVDETSTPQSPGMLKSHYAPRSQVRL----RAI 241 ILRPG + E ++ A +VE+ Y ++ T +SPGM +HY+P ++V L A Sbjct: 196 -ILRPGKVSAEDIRECAGNVEIGYTDKTLEGNETARSPGMKYTHYSPETKVILIEGSSAS 254 Query: 242 HVNPREALI--------RFGNVPIKNIENAI---ISLNLSKTGKLKEAAFNLFNYMKIAD 290 N LI R G + + I ++I ++ +L K + +AA ++F ++ D Sbjct: 255 VENTMVNLITNCHKKGKRVGLLATEEILDSINSDVTYSLGKKDEPNQAARSIFMGLRHLD 314 Query: 291 DSGASSIAFS-SIPNHGLGIAINNRLERAA 319 + I ++ G+G AI NRL +AA Sbjct: 315 NKEIDIILVDGTLKTDGIGAAIFNRLRKAA 344 >gi|228961589|ref|ZP_04123198.1| hypothetical protein bthur0005_50310 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228798071|gb|EEM45075.1| hypothetical protein bthur0005_50310 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 346 Score = 152 bits (385), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 111/325 (34%), Positives = 169/325 (52%), Gaps = 21/325 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++A + L +A PTETVYGL ++ + AI +++E K RP+ NPLI H+ S + Sbjct: 21 LQEAAKLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQLD 80 Query: 72 KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P++ L FWPGPLT++L I TA L T R+P LIE Sbjct: 81 GIVKEIPPVAEKLMAHFWPGPLTIILP--RKEGISENVTAGLNTVGVRMPDHPIAIALIE 138 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+A PSANRSG+ S T H+ + +I I+DGG + +G+EST+++ C V Sbjct: 139 EANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVID--CTSAV 195 Query: 190 -RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPR--------SQVRL 238 ILRPGG+ E L+ I +V L+ + DE P+SPGM +HYAP+ S+ + Sbjct: 196 PTILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255 Query: 239 RAIHVNPREALIRFG---NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 + + ++ + G +++ +A + L+ L A L++ ++ D S Sbjct: 256 QHLVDEKKKEGFKVGVLTTEEYQHVYSADVILSCGVRSDLASVATKLYDVLRTFDASKVD 315 Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320 I S PN G+G AI NRL +AA Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAG 340 >gi|227431144|ref|ZP_03913200.1| Sua5/YciO/YrdC/YwlC family protein [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227353096|gb|EEJ43266.1| Sua5/YciO/YrdC/YwlC family protein [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 337 Score = 152 bits (385), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 106/332 (31%), Positives = 173/332 (52%), Gaps = 26/332 (7%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 T N + +A + G +A PTETVYGL D+ N +AI++++ K RPA NPLI V+D Sbjct: 8 TTKNDIEEASRLIQNGEVVAFPTETVYGLGADATNESAIKKVFVAKGRPADNPLIMTVAD 67 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + + + ++ + L FWPG LT++L + ++ L T L+T FR+P + Sbjct: 68 AAQLDEFVTISDQARGLMDHFWPGSLTIILP-IKPGNVSMLVTGGLQTVAFRLPANDAAR 126 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LI G P+ PSAN SG+ S T +H+ + +I I+D G +++G+EST++++ Sbjct: 127 TLIRAAGVPIVGPSANTSGKPSPTTAQHVW-HDMQNKIAGIVDDGPTQVGVESTVIDMSI 185 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETS--------TPQSPGMLKSHYAPRSQV- 236 + ILRPG + L+ + +++ +D TS TP++PGM HYAP V Sbjct: 186 STPI-ILRPGAVTQPQLEEVLQMKV---IDATSTESVASNVTPKAPGMKYRHYAPDKNVV 241 Query: 237 ---RLRAIHVN----PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKI- 288 L A+ + P + ++ ++ K + +L T L+ A LF ++ Sbjct: 242 MFDELDALELKQVLAPNDVVMAKDDMIEKMALTNHQAWSLGNT--LETATEQLFAGLRFY 299 Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 DDS ++I +P G+G A NNRL +AA Sbjct: 300 DDDSQITTIYVQKMPPIGIGKAFNNRLGKAAG 331 >gi|227514469|ref|ZP_03944518.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus fermentum ATCC 14931] gi|227087155|gb|EEI22467.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus fermentum ATCC 14931] Length = 343 Score = 152 bits (385), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 107/329 (32%), Positives = 171/329 (51%), Gaps = 27/329 (8%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A + + AG +A PTETVYGL D+ N A++++Y K RP+ NPLI HVS ++MV+ Sbjct: 12 VKQAAKLIQAGQLVAFPTETVYGLGADATNEEAVKQVYLAKGRPSDNPLIVHVSSLAMVE 71 Query: 72 KHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129 A+ P + L FWPG LT++L + T + T L T FR P C T LI Sbjct: 72 HFAAEIPAKAKQLMDRFWPGSLTIILRVKPGT-LSKTVTGGLDTVAFRFPDCQPTLDLIS 130 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G P+ PSAN SG+ S T H+ + +I IID G +++G+EST++++ + V Sbjct: 131 QVGVPIVGPSANTSGKPSPTTANHVY-HDLNNKIAGIIDNGPTRVGVESTVLDMSTSQPV 189 Query: 190 RILRPGGLEIETLKRAI-SVEL-EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 ILRPG + + ++ I S+++ + V + P++PGM HYAP +QV + V+P + Sbjct: 190 -ILRPGAVTKQDIEGVIGSIDINHHQVKQDEVPKAPGMKYKHYAPNAQVYI----VDPAD 244 Query: 248 ALIRFGNVPIKNIEN---------------AIISLNLSKTGKLKEAAFNLFNYMKIADDS 292 V ++ E ++ + S ++EA+ +LF ++ D+ Sbjct: 245 DWGEVAAVIAQSKEQVGLMATDQVLHAHVWSVQADQFSLGTGVQEASAHLFEGLRDFDNQ 304 Query: 293 GASSIAF-SSIPNHGLGIAINNRLERAAA 320 F GLG A NRL ++A Sbjct: 305 EEIHQIFCQGFEPTGLGAAYMNRLNKSAG 333 >gi|229153489|ref|ZP_04281667.1| hypothetical protein bcere0011_50190 [Bacillus cereus m1550] gi|228630093|gb|EEK86744.1| hypothetical protein bcere0011_50190 [Bacillus cereus m1550] Length = 346 Score = 152 bits (385), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 111/325 (34%), Positives = 169/325 (52%), Gaps = 21/325 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++A + L +A PTETVYGL ++ + AI +++E K RP+ NPLI H+ S + Sbjct: 21 LQEAAKLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQLD 80 Query: 72 KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P++ L FWPGPLT++L I TA L T R+P LIE Sbjct: 81 GIVKEIPPVAEKLMAHFWPGPLTIILP--RKEGISEKVTAGLNTVGVRMPDHPIALALIE 138 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+A PSANRSG+ S T H+ + +I I+DGG + +G+EST+++ C V Sbjct: 139 EANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVID--CTSTV 195 Query: 190 -RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPR--------SQVRL 238 ILRPGG+ E L+ I +V L+ + DE P+SPGM +HYAP+ S+ + Sbjct: 196 PTILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255 Query: 239 RAIHVNPREALIRFGNVPIKNIE---NAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 + + ++ + G + + + +A + L+ L A L++ ++ D S Sbjct: 256 QHLVDEKKKEGFKVGVLTTEEYQYVYSADVILSCGVRSDLASVATKLYDVLRTFDASEVD 315 Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320 I S PN G+G AI NRL +AA Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAG 340 >gi|184154905|ref|YP_001843245.1| hypothetical protein LAF_0429 [Lactobacillus fermentum IFO 3956] gi|183226249|dbj|BAG26765.1| conserved hypothetical protein [Lactobacillus fermentum IFO 3956] Length = 343 Score = 152 bits (385), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 107/329 (32%), Positives = 171/329 (51%), Gaps = 27/329 (8%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A + + AG +A PTETVYGL D+ N A++++Y K RP+ NPLI HVS ++MV+ Sbjct: 12 VKQAAKLIQAGQLVAFPTETVYGLGADATNEEAVKQVYLAKGRPSDNPLIVHVSSLAMVE 71 Query: 72 KHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129 A+ P + L FWPG LT++L + T + T L T FR P C T LI Sbjct: 72 HFAAEIPAKAKQLMDRFWPGSLTIILRVKPGT-LSKTVTGGLDTVAFRFPDCQPTLDLIS 130 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G P+ PSAN SG+ S T H+ + +I IID G +++G+EST++++ + V Sbjct: 131 QAGVPIVGPSANTSGKPSPTTANHVY-HDLNNKIAGIIDNGPTRVGVESTVLDMSTSQPV 189 Query: 190 RILRPGGLEIETLKRAI-SVEL-EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 ILRPG + + ++ I S+++ + V + P++PGM HYAP +QV + V+P + Sbjct: 190 -ILRPGAVTKQDIEGVIGSIDINHHQVKQDEVPKAPGMKYKHYAPNAQVYI----VDPAD 244 Query: 248 ALIRFGNVPIKNIEN---------------AIISLNLSKTGKLKEAAFNLFNYMKIADDS 292 V ++ E ++ + S ++EA+ +LF ++ D+ Sbjct: 245 DWGEVAAVIAQSKEQVGLMATDQVLHAHVWSVQADQFSLGTGVQEASAHLFEGLRDFDNQ 304 Query: 293 GASSIAF-SSIPNHGLGIAINNRLERAAA 320 F GLG A NRL ++A Sbjct: 305 EEIHQIFCQGFEPTGLGAAYMNRLNKSAG 333 >gi|217967196|ref|YP_002352702.1| Sua5/YciO/YrdC/YwlC family protein [Dictyoglomus turgidum DSM 6724] gi|217336295|gb|ACK42088.1| Sua5/YciO/YrdC/YwlC family protein [Dictyoglomus turgidum DSM 6724] Length = 338 Score = 152 bits (385), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 109/332 (32%), Positives = 166/332 (50%), Gaps = 23/332 (6%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L+KA + L+ G +A PTETVYGL D+ NP A+++++ K RP NP+I HV Sbjct: 13 DIEVLKKAAQVLEKGGLVAFPTETVYGLGADALNPEAVKKIFIAKGRPPDNPIIVHVGKK 72 Query: 68 SMVKK-HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 V +V ++ L + FWPGPLTL+ + + + TA R P Sbjct: 73 EQVYSLTENVPSIAEKLMEEFWPGPLTLI--FYKSNLVDDVVTAGSPKVGIRQPMNKVAL 130 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 KL+E +G P+A PSAN SG+ S T +H++ + +I +IIDGG G+EST++++ Sbjct: 131 KLLEVFGKPIAAPSANVSGRPSPTKAEHVI-EDLEDKIDIIIDGGDVNFGVESTVLDITT 189 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQ--SPGMLKSHYAPR---------S 234 + + I RPG E ++R I ++ E S SPG+ HYAP+ + Sbjct: 190 DTPI-IYRPGACPKEEIERVIGKKVMVWNKEKSKEDVPSPGLKYRHYAPKVPLYIVEEFN 248 Query: 235 QVRLRAIHVNPREALIRFGNVPIKNIEN----AIISLNLSKTGKLKEAAFNLFNYMKIAD 290 ++ I+ +E + G + K EN I + L E A NLF Y++ + Sbjct: 249 EIWQNKINDWLKEGK-KVGVLVSKENENLYSDKIKKYVIGSRKNLTEIALNLFFYLRKLE 307 Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 I S P GLG+A+ +RL RAA + Sbjct: 308 KE-VDIIISESFPEEGLGLAVMDRLRRAAGEK 338 >gi|170017814|ref|YP_001728733.1| putative translation factor (SUA5) [Leuconostoc citreum KM20] gi|169804671|gb|ACA83289.1| Putative translation factor (SUA5) [Leuconostoc citreum KM20] Length = 336 Score = 152 bits (385), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 109/327 (33%), Positives = 170/327 (51%), Gaps = 26/327 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A L AG +A PTETVYGL D+ + A+++++ K RPA NPLI V+D + Sbjct: 12 IQRAGVLLKAGEVVAFPTETVYGLGADATHEEAVQKVFVAKGRPADNPLIMTVADAEQLT 71 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 SV + L FWPG LT++L + + + T L TA FR+P T+ +I Sbjct: 72 NFVSVSEAAKALIDAFWPGSLTIILP-IKPGQVSMMVTGGLDTAAFRLPDNETTRAIIRE 130 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G P+ PSAN SG+ S T +H+ K I I+D G +++G+EST+V++ + Sbjct: 131 AGVPIVGPSANTSGKPSPTTAQHVWHDMQGK-IAAIVDDGPTQVGVESTVVDMAADVPT- 188 Query: 191 ILRPGGLEIETLKRAISVELEYCVDETS--------TPQSPGMLKSHYAPRSQV----RL 238 ILRPG + + L+ + + + +D TS TP++PGM HYAP QV RL Sbjct: 189 ILRPGAVTQQQLEDVLGI---HVLDATSTMSVADDVTPKAPGMKYRHYAPDKQVVMFDRL 245 Query: 239 RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGK----LKEAAFNLFNYMKIADD-SG 293 A+ + A + ++ ++L L++T L+ A LF ++ DD + Sbjct: 246 DALALKVSLAPTDVVMAQEETLQR--MALPLAQTWSLGTTLENATEQLFAGLRYYDDVAH 303 Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAA 320 +I +P GLG A NNRL +A+ Sbjct: 304 VKTIYVEKMPPIGLGKAFNNRLGKASG 330 >gi|299782950|gb|ADJ40948.1| Putative uncharacterized protein [Lactobacillus fermentum CECT 5716] Length = 343 Score = 152 bits (385), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 106/329 (32%), Positives = 170/329 (51%), Gaps = 27/329 (8%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A + + AG +A PTETVYGL D+ N A++++Y K RP+ NPLI HVS ++MV+ Sbjct: 12 VKQAAKLIQAGQLVAFPTETVYGLGADATNEEAVKQVYLAKGRPSDNPLIVHVSSLAMVE 71 Query: 72 KHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129 A+ P + L FWPG LT++L + T + T L T FR P C T LI Sbjct: 72 HFAAEIPAKAKQLMDRFWPGSLTIILRVKPGT-LSKTVTGGLDTVAFRFPDCQTTLDLIS 130 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G P+ PSAN SG+ S T H+ + +I IID G +++G+EST++++ + V Sbjct: 131 QAGVPIVGPSANTSGKPSPTTANHVY-HDLNNKIAGIIDNGPTRVGVESTVLDMSTSQPV 189 Query: 190 RILRPGGLEIETLKRAI-SVEL-EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 ILRPG + + ++ I S+++ + V + P++PGM HYAP +QV + V+P + Sbjct: 190 -ILRPGAVTKQDIEGVIGSIDINHHQVKQDEVPKAPGMKYKHYAPNAQVYI----VDPAD 244 Query: 248 ALIRFGNVPIKNIEN---------------AIISLNLSKTGKLKEAAFNLFNYMKIADDS 292 V ++ E ++ + S ++EA+ + F ++ D+ Sbjct: 245 DWGEVAAVIAQSKEQVGLMATDQVLHAHVWSVQADQFSLGTGVQEASAHFFEGLRDFDNQ 304 Query: 293 GASSIAF-SSIPNHGLGIAINNRLERAAA 320 F GLG A NRL ++A Sbjct: 305 EEIHQIFCQGFEPTGLGAAYMNRLNKSAG 333 >gi|302380242|ref|ZP_07268714.1| Sua5/YciO/YrdC/YwlC family protein [Finegoldia magna ACS-171-V-Col3] gi|302312025|gb|EFK94034.1| Sua5/YciO/YrdC/YwlC family protein [Finegoldia magna ACS-171-V-Col3] Length = 342 Score = 152 bits (385), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 107/329 (32%), Positives = 167/329 (50%), Gaps = 27/329 (8%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 AL KA E + G +A PTETVYGL + + A ++++++K+R NPLI HV++ MV Sbjct: 16 ALEKAAELIKNGSVVAFPTETVYGLGANGLDEEACKKIFDVKRRKRDNPLILHVTNEDMV 75 Query: 71 KKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 K +S + L WPGPLT++ + ++ + + T R P + LI Sbjct: 76 KNLSSEITEDQKKLMDNLWPGPLTIIFK--KSDKVNDVVSCGGDTVAIRNPSDEIARFLI 133 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 + G P+A PSAN+SG+ S TN + + S + EI +I+DGG IG+EST+V++ EK Sbjct: 134 DKSGCPIAAPSANKSGRPSPTNAQDVY-SDMQDEIEMILDGGSCNIGIESTVVDL-TEKP 191 Query: 189 VRILRPGGLEIETLKRAISVELEY---CVDETSTPQSPGMLKSHYAPRS----------- 234 ILRPG E L+ + E+ Y +D + P+SPG HYAP++ Sbjct: 192 YTILRPGFYIKEDLEEYLD-EVVYDKSLIDSNTIPKSPGQKYKHYAPKTKLIVIKGNMDN 250 Query: 235 -QVRLRAIHVNPREALIRFGNVPIKNI--ENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291 Q + ++ +N E KN+ EN I +SK A N+F Y++ D Sbjct: 251 IQNYVDSLGINTGEVGFILTEETAKNVNFENVKI---ISKRNDYLNFAHNIFTYLRELDK 307 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320 + + +GI+I NRL+++ A Sbjct: 308 FNYKLLICEGVNEQKMGISIMNRLKKSCA 336 >gi|160894646|ref|ZP_02075421.1| hypothetical protein CLOL250_02197 [Clostridium sp. L2-50] gi|156863580|gb|EDO57011.1| hypothetical protein CLOL250_02197 [Clostridium sp. L2-50] Length = 359 Score = 152 bits (385), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 116/334 (34%), Positives = 168/334 (50%), Gaps = 29/334 (8%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 RKA + L +G +A PTETVYGL D+ NP A ++Y K RP+ NPLI H++D + V Sbjct: 28 FRKASDILKSGGLVAFPTETVYGLGGDALNPKASEKIYSAKGRPSDNPLIVHIADTASVW 87 Query: 72 KH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCG-FTKKLI 128 + A V + L + FWPGPLT++ DI P +T L+T R+P KLI Sbjct: 88 ELVAEVSTQAQMLMEAFWPGPLTIIF---KKKDIVPHETTGGLETVAIRMPSHPAAMKLI 144 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 + G +A PSAN SG+ S T H+ + I +I+DGG IG+ESTIV+V ++ Sbjct: 145 KDSGVYIAAPSANLSGRPSPTTAAHV-EEDLSGRIDMILDGGPVGIGIESTIVDVTGDRP 203 Query: 189 VRILRPGGLEIETLKR-----AISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 ILRPG + + +K I LE VD P++PGM +HYAP+ ++ + Sbjct: 204 T-ILRPGYISADMIKNILGDVMIDPALE-SVDMKVRPKAPGMKYTHYAPKGKLTIVEGER 261 Query: 244 NPREALIR----------FGNVPIKNIENAII--SLNLSKTGKLKE---AAFNLFNYMKI 288 A I + + + EN + N+ G K + +L+ +++ Sbjct: 262 EKVAAKIAELVACKQAEGYKTAVLCDTENTDLYSCENVLDAGSKKNEITVSSSLYRLLRL 321 Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 DD GA I S +G AI NRL +AA R Sbjct: 322 CDDIGADYIYSESFREGDMGYAIMNRLIKAAGHR 355 >gi|298674856|ref|YP_003726606.1| Sua5/YciO/YrdC/YwlC family protein [Methanohalobium evestigatum Z-7303] gi|298287844|gb|ADI73810.1| Sua5/YciO/YrdC/YwlC family protein [Methanohalobium evestigatum Z-7303] Length = 358 Score = 152 bits (384), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 116/343 (33%), Positives = 172/343 (50%), Gaps = 29/343 (8%) Query: 2 QIMSITDSN---ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58 +I+ I SN ++ KA E L +A PTETVYGL ++ + ++R+++ K RP N Sbjct: 6 EILRINSSNFSESISKAAEILKNRGTVAFPTETVYGLGANALDSVSVRKIFSAKGRPPDN 65 Query: 59 PLICHV-SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 PLI H+ S + + + L FWPGPLTL+L + ++T L T Sbjct: 66 PLIVHIASKEQAIDISEDIPDNAFLLMDAFWPGPLTLILK--RKNFVPDVTTGGLNTVAI 123 Query: 118 RVPCGFTK-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P T +LI+ G P+A PSAN SG+ S T +H++S K I I+D G IG+ Sbjct: 124 RMPDNETAIELIKKAGVPIAAPSANISGKPSPTTAEHVISDLYGK-IDAIVDNGAVDIGV 182 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAI-SVELEYCVDE--TSTPQSPGMLKSHYAPR 233 EST+V++ +K + +LRPGG+ IE LK I +E+ Y + +SPGM HY+P Sbjct: 183 ESTVVDMTSDKPL-LLRPGGIGIEDLKEYIPDIEIGYNSENLIDKKVKSPGMKYIHYSPS 241 Query: 234 SQVRLRAIHVNPREAL-----------IRFGNVPIKNIENAIISLN-----LSKTGKLKE 277 S+V L E + + G + N I N L +K+ Sbjct: 242 SKVVLVEGFYRVSEKINQVISDYHKNDLNVGLLVTNETGNQITDKNINIFLLGNRDNIKK 301 Query: 278 AAFNLFNYMKIADDSGASSIAFS-SIPNHGLGIAINNRLERAA 319 A NLF ++ DD I SI + G+G A+ NRL++AA Sbjct: 302 VANNLFKGLRTLDDMNLDVIIVDGSIKHEGIGSAVINRLQKAA 344 >gi|296331334|ref|ZP_06873806.1| putative ribosome maturation factor; RNA binding protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305676320|ref|YP_003867992.1| putative ribosome maturation factor; RNA binding protein [Bacillus subtilis subsp. spizizenii str. W23] gi|296151449|gb|EFG92326.1| putative ribosome maturation factor; RNA binding protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414564|gb|ADM39683.1| putative ribosome maturation factor; RNA binding protein [Bacillus subtilis subsp. spizizenii str. W23] Length = 346 Score = 152 bits (384), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 112/333 (33%), Positives = 176/333 (52%), Gaps = 22/333 (6%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 T+ + +A L +A PTETVYGL +++N A++++Y+ K RP+ NPLI H++D Sbjct: 16 TNDPQIAQAAALLRENEVVAFPTETVYGLGANAKNTDAVKKIYKAKGRPSDNPLIVHIAD 75 Query: 67 ISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 IS + P L K FWPG LTL+L + P TA L+T R+P Sbjct: 76 ISQLDGLTGPAPEKAKTLMKRFWPGALTLILPCKPGA-LSPRVTAGLETVAIRMPDHPLA 134 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 LI G P+A PSAN SG+ S T +H+ + + I I+DGG + IG+EST+++ Sbjct: 135 LALIRESGLPIAAPSANLSGKPSPTKAEHV-AHDLDGRIAGIMDGGPTGIGVESTVLSCA 193 Query: 185 CEKKVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQV------ 236 + V +LRPGG+ E ++ I L + D+ P SPGM +HYAP + + Sbjct: 194 GDIPV-LLRPGGITKEQIEAEIGPILVDKGLSDQNEKPISPGMKYTHYAPTAPLAICEGG 252 Query: 237 --RLRAIHVNPREALIRFGNVPIKNIENA-IISLNLSKT----GKLKEAAFNLFNYMKIA 289 R++ + ++ R G + + ENA + S + K+ +L+ A L++ ++ Sbjct: 253 PERIQHLIQEYQQGGRRVGVLTTE--ENAGVYSADYVKSCGRRAQLETVAAALYDALRSF 310 Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 D++ I S P+ G+G+AI NRL +AA R Sbjct: 311 DENKVDFIIAESFPDTGVGLAIMNRLMKAAGGR 343 >gi|168213696|ref|ZP_02639321.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens CPE str. F4969] gi|170714770|gb|EDT26952.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens CPE str. F4969] Length = 350 Score = 152 bits (384), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 110/337 (32%), Positives = 170/337 (50%), Gaps = 34/337 (10%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L +A E + G A PTETVYGL ++ + A+++++ K RP NPLI H++D Sbjct: 14 DIKYLEEAAEIIKKGGIGAFPTETVYGLGANALDGEAVKKIFVAKGRPQDNPLIIHIADK 73 Query: 68 SMVKKH-ASVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPLSTANLKTACFRVPCG- 122 + K+ A + + L FWPGPLT++L D++S +++A L T R+P Sbjct: 74 KDIDKYVAEIPKYAQELMDKFWPGPLTIILKKKDIVSD-----VTSAGLDTVGVRMPNDE 128 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 KLIE G P+A PSAN SG+ S T+++ + + II S+IG+ESTIV+ Sbjct: 129 IALKLIELSGVPIAAPSANISGRPSPTDIER-CEEDLNGRVDFIIGAKKSEIGVESTIVD 187 Query: 183 VQCEKKVRILRPGGLEIETLKR-----AISVELEYCVDETSTPQSPGMLKSHYAPRSQVR 237 E + +LRPGG+ +E LK I + +D+ + P++PGM HYAP+++VR Sbjct: 188 ATGE-HLCVLRPGGITLEMLKDIDEGVYIDKAILTTLDKDTKPKAPGMKYKHYAPKAKVR 246 Query: 238 L-------------RAIHVNPREAL---IRFGNVPIKNIENAIISLNLSKTGKLKEAAFN 281 + +H E L I + I + I+ +L L N Sbjct: 247 MVQGPINKMVEKIKEIVHNYIDEDLKVGIMATDETISMYDEGIVK-SLGTREDLTSVTKN 305 Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERA 318 LF ++ DD G I + LG+AI NRL+++ Sbjct: 306 LFEMLRAFDDLGVDVIITEAFEEKDLGVAIMNRLKKS 342 >gi|320529371|ref|ZP_08030459.1| Sua5/YciO/YrdC/YwlC family protein [Selenomonas artemidis F0399] gi|320138337|gb|EFW30231.1| Sua5/YciO/YrdC/YwlC family protein [Selenomonas artemidis F0399] Length = 355 Score = 152 bits (384), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 110/343 (32%), Positives = 169/343 (49%), Gaps = 30/343 (8%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 QI+S + A + + G +A PTETVYGL + + A R+Y K RP+ NPLI Sbjct: 4 QIISPVRDADIAHAAQMIRDGALVAFPTETVYGLGANGLDVAACARIYAAKGRPSDNPLI 63 Query: 62 CHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 H++D+SM A V P + HL F PGP+T++L + + T L T R P Sbjct: 64 LHIADLSMAADAARIVTPAAAHLLTAFAPGPITVILP--KAAHVPDIVTGGLSTVGVRCP 121 Query: 121 C-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + LI G P+A PSAN SG+ S T ++S + IP I+DGG + G+EST Sbjct: 122 DHDIARALIRAAGVPIAAPSANTSGRPSPTTAA-MVSDDLAGRIPCILDGGACRWGVEST 180 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETST-----PQSPGMLKSHYAPRS 234 IV+ + V +LRPG + E + + ++E VD T P++PGM HYAPR+ Sbjct: 181 IVDCTEDGIVTVLRPGAVTREMIAAELP-QMEVRVDPALTAADAVPRAPGMKYRHYAPRA 239 Query: 235 QVR------------LRAIHVNPREALIRFGNVPIKNIENAIISL-----NLSKTGKLKE 277 + LRA + R + G + + A+ L + + + Sbjct: 240 SLTVYTGAPDTVTAALRAEILRRRAEGTQVGLIASRETCAALTGLISPAYVYACGARGDD 299 Query: 278 AAFN--LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERA 318 AA+ L++ ++ D++ A ++ HGLG+A+ NRL +A Sbjct: 300 AAYANCLYDALRRFDNTDAGALLAEGTDEHGLGLAVMNRLRKA 342 >gi|296134388|ref|YP_003641635.1| Sua5/YciO/YrdC/YwlC family protein [Thermincola sp. JR] gi|296032966|gb|ADG83734.1| Sua5/YciO/YrdC/YwlC family protein [Thermincola potens JR] Length = 361 Score = 152 bits (383), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 110/337 (32%), Positives = 182/337 (54%), Gaps = 28/337 (8%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + +A E + G +A PTETVYGL ++ + A+++++ K RP+ NPLI H+++ Sbjct: 15 DPETISQAAEIIKRGGVVAFPTETVYGLGANALDGPAVQKIFAAKGRPSDNPLIVHIAEF 74 Query: 68 SMVKKHASVDPLSLHLA-KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 S ++ + PL+ A ++FWPGPLT+++ DI T LKT R+P Sbjct: 75 SQLEMLVTEVPLTARRAMEVFWPGPLTIIMP--CRDDIPRTVTGGLKTVGVRMPKHPVAL 132 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LI+ P+A PSAN SG+ S T +H++ + +I +IDGG +++G+EST++++ Sbjct: 133 ALIKAAKLPIAAPSANSSGKPSPTEARHVM-YDLAGKIDAVIDGGPAQVGVESTVLDMTG 191 Query: 186 EKKVRILRPGGLEIETLKRAIS-VELEY-CVDET--STPQSPGMLKSHYAPRSQVRL--- 238 + V ILRPGG+ E L+ + V+L+ VD+ P++PGM HY+P +++ L Sbjct: 192 DTPV-ILRPGGVTREQLEAILGHVDLDLPSVDKIIHQAPKAPGMKYRHYSPEAKLILVKP 250 Query: 239 ---RAIHVNPREALIRFGNVPIK-----NIENA-IISLN------LSKTGKLKEAAFNLF 283 +A+ + R+ + +K ++E A I+ L L G L+E A NLF Sbjct: 251 VPGKAVADIIQALADRYQSKGMKVALMVSVETASILPLEDVLCGILGHRGHLEEIAGNLF 310 Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ D I G+G+AI NRL +AA+ Sbjct: 311 KVLREVDAQKPDVIIAEGFAEAGIGMAIMNRLTKAAS 347 >gi|116333897|ref|YP_795424.1| putative translation factor (SUA5) [Lactobacillus brevis ATCC 367] gi|116099244|gb|ABJ64393.1| translation factor SUA5 [Lactobacillus brevis ATCC 367] Length = 338 Score = 152 bits (383), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 114/320 (35%), Positives = 162/320 (50%), Gaps = 23/320 (7%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81 G +A PTETVYGL D+ N A++++Y K RP+ NPLI HV+ VK A PLS Sbjct: 21 GQLVAFPTETVYGLGADATNEAAVKQVYLAKGRPSDNPLIVHVTGEETVKAFAQ--PLSD 78 Query: 82 H---LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAI 137 L K FWPGPLTL+ L + T L TA FR P T LI+ G PL Sbjct: 79 KAEALIKAFWPGPLTLIF-ALQPGKLSSAVTGGLNTAAFRNPDNAATLALIKAAGVPLVG 137 Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197 PSAN SG+ S T KH+ + +I I+D G +K+G+EST++++ + ILRPGG+ Sbjct: 138 PSANTSGKPSPTLAKHVY-HDLNGKIAGILDDGPTKVGVESTVLDMSTDIPT-ILRPGGV 195 Query: 198 EIETLKRAISV--ELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALI----R 251 E L I + V +T P++PGM HYAP +QV + + AL + Sbjct: 196 TEEQLAAVIGTVQSSHHKVGKTEVPKAPGMKYKHYAPNAQVTIVDHEADWTAALQWASEQ 255 Query: 252 FGNVPIKNIENAIISLNL-------SKTGKLKEAAFNLFNYMKIAD-DSGASSIAFSSIP 303 G + + ++ + + NL S L A+ LF ++ D +S + I Sbjct: 256 SGTIGVMAVDRILQAHNLPDNVEAFSLGHDLTSASHRLFAGLRHFDLESPVTGILAQGFT 315 Query: 304 NHGLGIAINNRLERAAAPRN 323 GLG A NRL ++A ++ Sbjct: 316 AEGLGAAYMNRLNKSAGQQH 335 >gi|18311182|ref|NP_563116.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens str. 13] gi|18145865|dbj|BAB81906.1| conserved hypothetical protein [Clostridium perfringens str. 13] Length = 350 Score = 152 bits (383), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 110/337 (32%), Positives = 170/337 (50%), Gaps = 34/337 (10%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L +A E + G A PTETVYGL ++ + A+++++ K RP NPLI H++D Sbjct: 14 DIKYLEEAAEIIKNGGIGAFPTETVYGLGANALDGEAVKKIFVAKGRPQDNPLIIHIADK 73 Query: 68 SMVKKH-ASVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPLSTANLKTACFRVPCG- 122 + K+ A + + L FWPGPLT++L D++S +++A L T R+P Sbjct: 74 KDIDKYVAEIPKYAQELMDKFWPGPLTIILKKKDIVSD-----VTSAGLDTVGVRMPNDE 128 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 KLIE G P+A PSAN SG+ S T+++ + + II S+IG+ESTIV+ Sbjct: 129 IALKLIELSGVPIAAPSANISGRPSPTDIER-CEEDLNGRVDFIIGAKKSEIGVESTIVD 187 Query: 183 VQCEKKVRILRPGGLEIETLKR-----AISVELEYCVDETSTPQSPGMLKSHYAPRSQVR 237 E + +LRPGG+ +E LK I + +D+ + P++PGM HYAP+++VR Sbjct: 188 ATGE-HLCVLRPGGITLEMLKDIDEGVDIDKAILTTLDKDTKPKAPGMKYKHYAPKAKVR 246 Query: 238 L-------------RAIHVNPREAL---IRFGNVPIKNIENAIISLNLSKTGKLKEAAFN 281 + +H E L I + I + I+ +L L N Sbjct: 247 MVQGPINKMVEKIKEIVHNYIDEDLKVGIMATDETISMYDEGIVK-SLGTREDLTSVTKN 305 Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERA 318 LF ++ DD G I + LG+AI NRL+++ Sbjct: 306 LFEMLRAFDDLGVDVIITEAFEEKDLGVAIMNRLKKS 342 >gi|116618871|ref|YP_819242.1| translation factor SUA5 [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097718|gb|ABJ62869.1| translation factor SUA5 [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 337 Score = 152 bits (383), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 107/332 (32%), Positives = 172/332 (51%), Gaps = 26/332 (7%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 T N + +A + G +A PTETVYGL D+ N +AI++++ K RPA NPLI V+D Sbjct: 8 TTKNDIEEASRLIQNGEVVAFPTETVYGLGADATNESAIKKVFVAKGRPADNPLIMTVAD 67 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + + + ++ + L FWPG LT++L + + L T L+T FR+P + Sbjct: 68 AAQLDEFVTISDQARGLMDHFWPGSLTIILP-IKPGKVSMLVTGGLQTVAFRLPANDAAR 126 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LI G P+ PSAN SG+ S T +H+ + +I I+D G +++G+EST+V++ Sbjct: 127 TLIRAAGVPIVGPSANTSGKPSPTTAQHVW-HDMQNKIAGIVDDGPTQVGVESTVVDMSI 185 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETS--------TPQSPGMLKSHYAPRSQV- 236 + ILRPG + L+ + +++ +D TS TP++PGM HYAP V Sbjct: 186 STPI-ILRPGAVTQPQLEEVLQMKV---IDATSTESVASNVTPKAPGMKYRHYAPDKNVV 241 Query: 237 ---RLRAIHVN----PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKI- 288 L A+ + P + ++ ++ K + +L T L+ A LF ++ Sbjct: 242 MFDGLDALELKQVLAPNDVVMAKDDMIEKMALTNHQAWSLGNT--LETATEQLFAGLRFY 299 Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 DDS ++I +P G+G A NNRL +AA Sbjct: 300 DDDSQITTIYVQKMPPIGIGKAFNNRLGKAAG 331 >gi|283781887|ref|YP_003372642.1| Sua5/YciO/YrdC/YwlC family protein [Pirellula staleyi DSM 6068] gi|283440340|gb|ADB18782.1| Sua5/YciO/YrdC/YwlC family protein [Pirellula staleyi DSM 6068] Length = 345 Score = 152 bits (383), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 109/337 (32%), Positives = 168/337 (49%), Gaps = 28/337 (8%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I + + + L AG +AIPTETVYGLA D+ NP A+R+++ K RPA +PLI H++ Sbjct: 16 IVSDEIIARGAQLLAAGELVAIPTETVYGLAADATNPMAVRKIFAAKGRPADHPLIVHIA 75 Query: 66 DISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 + + + + P + LA FWPGPLT+++ S D + L T R P Sbjct: 76 YPDEIDRWGTEIPPAAWDLAAAFWPGPLTMIVRRRSNVD--SVVAGGLDTIAVRCPSHPV 133 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 ++L+ G +A PSAN+ G +S T H+L + +PL+IDGG ++GLESTIV++ Sbjct: 134 AQRLLRELGRGVAAPSANKFGHVSPTTAAHVL-AEFGDTLPLVIDGGACEVGLESTIVDL 192 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 + ILRPG + L+ + + + STP S G L SHYAP V + V Sbjct: 193 S-QSTPTILRPGAISQTDLELVLGLAIGDP-HANSTPCS-GRLASHYAPNCIVEI----V 245 Query: 244 NPREALIRFGNVP--------IKNIENAIISLNLSKTGKL-------KEAAFNLFNYMKI 288 E + ++ + E ++ +L ++ K A L+ ++ Sbjct: 246 TEEELTSKLASLDASGRRVGLLATEEGSVRALAALPADRIVWLPSDAKLYARGLYGALRA 305 Query: 289 ADDSGASSIAFSSIP-NHGLGIAINNRLERAAAPRNQ 324 AD+ G S P H L AI +RL++AA PR+ Sbjct: 306 ADERGFDHFLVVSPPLGHPLSAAILDRLQKAAGPRDS 342 >gi|168205563|ref|ZP_02631568.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens E str. JGS1987] gi|169344175|ref|ZP_02865157.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens C str. JGS1495] gi|169297633|gb|EDS79733.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens C str. JGS1495] gi|170662901|gb|EDT15584.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens E str. JGS1987] Length = 350 Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 110/337 (32%), Positives = 170/337 (50%), Gaps = 34/337 (10%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L +A E + G A PTETVYGL ++ + A+++++ K RP NPLI H++D Sbjct: 14 DIKYLEEAAEIIKNGGIGAFPTETVYGLGANALDGEAVKKIFVAKGRPQDNPLIIHIADK 73 Query: 68 SMVKKH-ASVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPLSTANLKTACFRVPCG- 122 + K+ A + + L FWPGPLT++L D++S +++A L T R+P Sbjct: 74 KDIDKYVAEIPKYAQELMDKFWPGPLTIILKKKDIVSD-----VTSAGLDTVGVRMPNDE 128 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 KLIE G P+A PSAN SG+ S T+++ + + II S+IG+ESTIV+ Sbjct: 129 IALKLIELSGVPIAAPSANISGRPSPTDIER-CEEDLNGRVDFIIGAKKSEIGVESTIVD 187 Query: 183 VQCEKKVRILRPGGLEIETLKR-----AISVELEYCVDETSTPQSPGMLKSHYAPRSQVR 237 E + +LRPGG+ +E LK I + +D+ + P++PGM HYAP+++VR Sbjct: 188 ATGE-HLCVLRPGGITLEMLKDIDEGVYIDKAILTTLDKDTKPKAPGMKYKHYAPKAKVR 246 Query: 238 L-------------RAIHVNPREAL---IRFGNVPIKNIENAIISLNLSKTGKLKEAAFN 281 + +H E L I + I + I+ +L L N Sbjct: 247 MVQGPINKMVEKIKEIVHNYIDEDLKVGIMATDETISMYDEGIVK-SLGTREDLTSVTKN 305 Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERA 318 LF ++ DD G I + LG+AI NRL+++ Sbjct: 306 LFEMLRAFDDLGVDVIITEAFEEKDLGVAIMNRLKKS 342 >gi|110802725|ref|YP_699474.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens SM101] gi|110683226|gb|ABG86596.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens SM101] Length = 350 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 109/336 (32%), Positives = 173/336 (51%), Gaps = 32/336 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L +A E + G A PTETVYGL ++ + A+++++ K RP NPLI H++D Sbjct: 14 DIKYLEEAAEIIKNGGIGAFPTETVYGLGANALDGEAVKKIFVAKGRPQDNPLIIHIADK 73 Query: 68 SMVKKH-ASVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPLSTANLKTACFRVPCG- 122 + K+ A + + L FWPGPLT++L D++S +++A L T R+P Sbjct: 74 KDIDKYVAEIPKYAQELMDKFWPGPLTIILKKKDIVSD-----VTSAGLDTVGVRMPNDE 128 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 KLIE G P+A PSAN SG+ S T+++ + + II S+IG+ESTIV+ Sbjct: 129 IALKLIELSGVPIAAPSANISGRPSPTDIER-CEEDLNGRVDFIIGAKKSEIGVESTIVD 187 Query: 183 VQCEKKVRILRPGGLEIETLKR-----AISVELEYCVDETSTPQSPGMLKSHYAPRSQVR 237 E + +LRPGG+ +E LK I + +D+ + P++PGM HYAP+++VR Sbjct: 188 ATGE-HLCVLRPGGITLEMLKDIDEGVYIDKAILTTLDKDTKPKAPGMKYKHYAPKAKVR 246 Query: 238 LRAIHVNP-----REALIRFGNVPIK----------NIENAIISLNLSKTGKLKEAAFNL 282 + +N +E + + + +K ++ N I +L L NL Sbjct: 247 MVQGPINKMVEKIKEIVHNYIDEDLKVGIMATDETISMYNEGIVKSLGTREDLTSITRNL 306 Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERA 318 F ++ DD G I + LG+AI NRL+++ Sbjct: 307 FETLRAFDDLGVDIIITEAFEEKDLGVAIMNRLKKS 342 >gi|229542479|ref|ZP_04431539.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus coagulans 36D1] gi|229326899|gb|EEN92574.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus coagulans 36D1] Length = 353 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 113/329 (34%), Positives = 174/329 (52%), Gaps = 22/329 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +A + L +A PTETVYGL D+ + A+ ++++ K RP+ NPLI H+++ ++ Sbjct: 21 LAEAAQLLKEKQTVAFPTETVYGLGADATSDEAVDKIFKAKGRPSDNPLIVHIAEEKQLE 80 Query: 72 KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + A P + L K FWPGPLTLV+ + + TA L T R+P LI Sbjct: 81 ELAEEIPETAKVLMKAFWPGPLTLVVKVKKGA-LSEKVTAGLDTVGIRMPRHPVALALIR 139 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G P+A PSANRSG+ S T +H+ + +I I+DGG + +G+EST+++V E V Sbjct: 140 MSGLPIAAPSANRSGKPSPTLARHV-REDLAGKIAGIVDGGETGVGVESTVLDVTAEVPV 198 Query: 190 RILRPGGLEIETLKRAIS-VELEYCVDETST---PQSPGMLKSHYAPRSQVRLRAIHVNP 245 ILRPGG+ E L+ I V L+ + T P++PGM +HYAP + V L + Sbjct: 199 -ILRPGGVTKEQLEERIGKVRLDPGLKGTGAGARPKAPGMKYTHYAPDAPVYLVDGSIAF 257 Query: 246 REALI----RFGNV-------PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGA 294 + +I + G V I A + + L+ A +L++ ++ + ++ Sbjct: 258 MQQMIDAHRKKGEVTGAIVTEETSGIVRADVVAVCGRRASLETVAQHLYDTLR-SFNAQK 316 Query: 295 SSIAFSSI-PNHGLGIAINNRLERAAAPR 322 + FS I P G+G AI NRLE+AA R Sbjct: 317 VDVIFSEIFPREGIGRAIMNRLEKAAGHR 345 >gi|168215829|ref|ZP_02641454.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens NCTC 8239] gi|182382042|gb|EDT79521.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens NCTC 8239] Length = 350 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 110/337 (32%), Positives = 170/337 (50%), Gaps = 34/337 (10%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L +A E + G A PTETVYGL ++ + A+++++ K RP NPLI H++D Sbjct: 14 DIKYLEEAAEIIKNGGIGAFPTETVYGLGANALDGEAVKKIFVAKGRPQDNPLIIHIADK 73 Query: 68 SMVKKH-ASVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPLSTANLKTACFRVPCG- 122 + K+ A + + L FWPGPLT++L D++S +++A L T R+P Sbjct: 74 KDIDKYVAEIPKYAQELMDKFWPGPLTIILRKKDIVSD-----VTSAGLDTVGVRMPNDE 128 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 KLIE G P+A PSAN SG+ S T+++ + + II S+IG+ESTIV+ Sbjct: 129 IALKLIELSGVPIAAPSANISGRPSPTDIER-CEEDLNGRVDFIIGAKKSEIGVESTIVD 187 Query: 183 VQCEKKVRILRPGGLEIETLKR-----AISVELEYCVDETSTPQSPGMLKSHYAPRSQVR 237 E + +LRPGG+ +E LK I + +D+ + P++PGM HYAP+++VR Sbjct: 188 ATGE-HLCVLRPGGITLEMLKDIDEGVYIDKAILTTLDKDTKPKAPGMKYKHYAPKAKVR 246 Query: 238 L-------------RAIHVNPREAL---IRFGNVPIKNIENAIISLNLSKTGKLKEAAFN 281 + +H E L I + I + I+ +L L N Sbjct: 247 MVQGPINKMVEKIKEIVHNYIDEDLKVGIMATDETISMYDEGIVK-SLGTREDLTSVTKN 305 Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERA 318 LF ++ DD G I + LG+AI NRL+++ Sbjct: 306 LFEMLRAFDDLGVDVIITEAFEEKDLGVAIMNRLKKS 342 >gi|282881792|ref|ZP_06290449.1| protein Sua5 [Peptoniphilus lacrimalis 315-B] gi|281298365|gb|EFA90804.1| protein Sua5 [Peptoniphilus lacrimalis 315-B] Length = 350 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 105/341 (30%), Positives = 169/341 (49%), Gaps = 37/341 (10%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L+K E G + PTETVYGL + + A++++YE K RP NP I H++ Sbjct: 16 DKKELKKITETFKEGGLVVFPTETVYGLGANGLDKEAVKKIYEAKGRPNDNPSILHIAKT 75 Query: 68 SMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FT 124 S + + S P ++ FWPGPLT++ +DI P+ T L T R+P Sbjct: 76 SQLDELVSEIPKIAKKCINNFWPGPLTII---FKKSDIVPMEVTGGLDTVAIRMPSNKIA 132 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 K+++ P+A PSAN SG+ S T H++ + + + +I+DGG S +G+EST+++V Sbjct: 133 AKILKNVNLPIAAPSANISGRPSPTKASHVIEDLMGR-VDIIVDGGKSIVGIESTVLDVT 191 Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVDET-------STPQSPGMLKSHYAPRSQVR 237 + + ILRPG + +E L++ ++ +D T S P+SPG HYAP+ Sbjct: 192 TDPPM-ILRPGKVTLEDLQK---IDKSIGIDNTTIDAKDKSIPKSPGQKYKHYAPKG--- 244 Query: 238 LRAIHVNPREALIRFGNVPIKNIENAI----------------ISLNLSKTGKLKEAAFN 281 + V + ++ N IKN + + + LNL L+E A + Sbjct: 245 MATCFVGEMDGIVNEINKRIKNSKGKVAVLATSQNLDKYVGADLILNLGDRDNLEEVANS 304 Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 LF+ ++ D+ I G+G++I NRL +A A R Sbjct: 305 LFDLLRKCDEEKVDVIFAEGFELKGMGLSIMNRLLKACAGR 345 >gi|253581044|ref|ZP_04858305.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847707|gb|EES75676.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 350 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 115/348 (33%), Positives = 178/348 (51%), Gaps = 37/348 (10%) Query: 2 QIMSIT----DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 +++S+T D A+R+ + L G +A PTETVYGL D+ NP A ++Y K RP+ Sbjct: 4 EVVSMTADNLDMEAIRRGGDILKQGGLVAFPTETVYGLGGDALNPQASMKIYAAKGRPSD 63 Query: 58 NPLICHVSDIS-MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTA 115 NPLI H+++ + A V + LA+ +WPGPLT++ +D+ P +T L + Sbjct: 64 NPLIVHIAEFDKLAPIVAEVPEKAKILAEKYWPGPLTMI---FPKSDLVPQETTGGLDSV 120 Query: 116 CFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174 R P ++LI+ G +A PSAN SG+ S T +H+ + + I +IIDGG I Sbjct: 121 AVRFPSDRIAQELIKAAGGYVAAPSANTSGRPSPTTAQHV-EEDLGEAIEMIIDGGQVGI 179 Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAIS-VELE---YCVDETSTPQSPGMLKSHY 230 GLESTIV+ + V +LRPG + +E L+ + V ++ D P++PGM HY Sbjct: 180 GLESTIVDFTEDVPV-VLRPGYISLEMLQETLGDVRMDKGLIAADSKVRPKAPGMKYRHY 238 Query: 231 APRSQVRLRAIHVNPREALIRFGN-----VPIKNIENAIISLNLSKT----------GKL 275 AP++ + AI P EA+++ N + II+ + +K G Sbjct: 239 APKADL---AIVEGPEEAVVKKINELAAEAKAHGEQVGIIATDETKDRYPEGLVVSIGSR 295 Query: 276 KEA---AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 KE A +L+ ++ D S SI + +G AI NRL +AA Sbjct: 296 KEEETIAHHLYEVLRDFDQSAVRSIYSEAFYTPRMGQAIMNRLLKAAG 343 >gi|205375324|ref|ZP_03228114.1| SUA5 protein [Bacillus coahuilensis m4-4] Length = 339 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 104/324 (32%), Positives = 165/324 (50%), Gaps = 18/324 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +R+A E L +A PTETVYGL ++ + A+R++YE K RP+ NPLI H+ D + Sbjct: 15 IRQAAELLQRNEVVAFPTETVYGLGANATSSEAVRKIYEAKGRPSDNPLIVHIDDKRQLG 74 Query: 72 KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P S + L FWPGPLT++ + TA L T RVP + ++ Sbjct: 75 DLVAEIPASAYLLMDEFWPGPLTIIFAKKPGV-FSDIVTAGLDTVAIRVPDHPVARAILH 133 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+A PSANRSG+ S T H+ ++ + I I+DGG + +G+EST+++ + Sbjct: 134 ETNLPIAAPSANRSGRPSPTTAHHV-ATDLTGRIAGIVDGGPTGVGVESTVIDCTVTPPM 192 Query: 190 RILRPGGLEIETLKRAIS-VELEYCVDE-TSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 ILRPGG+ E ++ I V ++ + E P+SPGM +HYAP + V L +V + Sbjct: 193 -ILRPGGVTAEQIREVIGDVSIDPSLKEGEGAPKSPGMKYTHYAPEAPVYLVEGNVQRLQ 251 Query: 248 ALI--------RFGNVPIKNIEN---AIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296 LI + G + + + A + + L A +L+ ++ +++ Sbjct: 252 QLIDRKQAEGMKVGVMSTREAASDLKADVVVTCGSRENLSTVARDLYEALRHFNETDVDI 311 Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320 I + G+G AI NRLE+AA Sbjct: 312 ILSETFSKEGIGSAIMNRLEKAAG 335 >gi|300813902|ref|ZP_07094206.1| Sua5/YciO/YrdC/YwlC family protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511965|gb|EFK39161.1| Sua5/YciO/YrdC/YwlC family protein [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 350 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 106/341 (31%), Positives = 169/341 (49%), Gaps = 37/341 (10%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L+K E G + PTETVYGL + + A++++YE K RP NP I H++ Sbjct: 16 DKKELKKITETFKEGGLVVFPTETVYGLGANGLDKEAVKKIYEAKGRPNDNPSILHIAKT 75 Query: 68 SMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FT 124 S + + S P ++ FWPGPLT++ +DI P+ T L T R+P Sbjct: 76 SQLDELVSEIPKIAKKCINNFWPGPLTII---FKKSDIVPMEVTGGLDTVAIRMPSNKIA 132 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 K+++ P+A PSAN SG+ S T H++ + + + +I+DGG S +G+EST+++V Sbjct: 133 AKILKNVNLPIAAPSANISGRPSPTKASHVIEDLMGR-VDIIVDGGKSIVGIESTVLDVT 191 Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVDET-------STPQSPGMLKSHYAPRSQVR 237 + + ILRPG + +E L++ ++ +D T S P+SPG HYAP+ Sbjct: 192 TDPPM-ILRPGKVTLEDLQK---IDKSIGIDNTTIDAKDKSIPKSPGQKYKHYAPKG--- 244 Query: 238 LRAIHVNPREALIRFGNVPIKNIE----------------NAIISLNLSKTGKLKEAAFN 281 + V + ++ N IKN + A + LNL L+E A + Sbjct: 245 MATCFVGEMDGIVNEINKRIKNSKGRVAVLATSQNLDKYVGADLILNLGDRDNLEEVANS 304 Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 LF+ ++ D+ I G+G++I NRL +A A R Sbjct: 305 LFDLLRKCDEEKVDVIFAEGFELKGMGLSIMNRLLKACAGR 345 >gi|296418740|ref|XP_002838983.1| hypothetical protein [Tuber melanosporum Mel28] gi|295634977|emb|CAZ83174.1| unnamed protein product [Tuber melanosporum] Length = 435 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 124/364 (34%), Positives = 173/364 (47%), Gaps = 61/364 (16%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 AL+ A + L G +A PTETVYGL D+ + + +Y K+RP+ NPLI HVS + + Sbjct: 72 ALKDAADLLRQGKCVAFPTETVYGLGADATSTVGVNSIYTAKQRPSDNPLIVHVSSLRQL 131 Query: 71 KK-HASVDPLSL------------------HLAKLFWPGPLTLVLDLLSTTDIHPLS--- 108 + A +P S L FWPGPLT++L L + PLS Sbjct: 132 RGILAPTNPTSTTNGHATNTCGGEIPEVYNALISKFWPGPLTILLPLPTINS--PLSASV 189 Query: 109 TANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 TA R+P + L PLA PSAN SG S T+ H+L + + IPLII Sbjct: 190 TAGQPKFAARLPSHPIARALCYLSSLPLAAPSANASGNPSPTSASHVL-TDLWNRIPLII 248 Query: 168 DGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK-------RAI--SVELEYCVDETS 218 DGG +GLEST+V+ + V +LRPGG+ +E ++ R I LE D + Sbjct: 249 DGGPCSVGLESTVVDGLRDPPV-VLRPGGISVEAIRELGGIWARTIISKASLEDAADPSI 307 Query: 219 TPQSPGMLKSHYAPRSQVRLRAIHVNP--REALIRFGNVPIKNI------------ENAI 264 TP++PGM HY+PR+ V L P + L+R + KN+ E+ I Sbjct: 308 TPEAPGMKYKHYSPRASVVLYEFGTPPLCGKDLVRSPILSAKNLNGKVGILRTRTWEDGI 367 Query: 265 ISLNLSKTGKLKEAAFN--------LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLE 316 L L G+LK + N LF ++ DD G I I G+A+ NRL Sbjct: 368 GELTL---GRLKYESNNGGEEIGRRLFAALRELDDEGVDVIHVEGIEEVLEGLAVMNRLR 424 Query: 317 RAAA 320 +AA+ Sbjct: 425 KAAS 428 >gi|327310576|ref|YP_004337473.1| sua5 family protein [Thermoproteus uzoniensis 768-20] gi|326947055|gb|AEA12161.1| sua5 family protein [Thermoproteus uzoniensis 768-20] Length = 346 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 107/318 (33%), Positives = 163/318 (51%), Gaps = 19/318 (5%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 +A + +G +A PTETVYGL D+ N A R+++ K RPA NPLI HVS + M + Sbjct: 19 EAAAVIRSGGLVAFPTETVYGLGADAFNAEASARIFKAKGRPADNPLIVHVSSLDMALEL 78 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132 + ++ +AK WPGP+T V+ D+ + TA T R P KLIE G Sbjct: 79 GDMPEKAVEVAKKAWPGPITFVVK--KKADLPAVVTAGRPTVALRCPAHPVALKLIEAAG 136 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192 P+A PSAN++G+ S T H+ + + + LI+D G + G+ESTIV+V E V +L Sbjct: 137 TPIAAPSANKAGRPSPTEASHV-AEDLGDSVDLILDAGRTFFGVESTIVDVTREPPV-LL 194 Query: 193 RPGGLEIETLKRAISVELEY-----CVDETSTPQSPGMLKSHYAPRSQVRLRAIHV---- 243 RPG +E LK + E+E + E +PGM HYAP + + L + Sbjct: 195 RPGPFTVEELKSLLG-EVEIPPFARGLGEADVALAPGMKYRHYAPETPLILVDFDLASAV 253 Query: 244 -NPREALIRFGNVPIKN-IENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSS 301 RE +R + + +A ++N+ L E A NL++ ++ D + Sbjct: 254 RAARELGLRVAVLCLAGRCADADAAINVGS--DLYEIAKNLYDALRRVDKVKVDVALAPT 311 Query: 302 IPNHGLGIAINNRLERAA 319 +P G+G+AI NRL +A+ Sbjct: 312 VPERGIGLAIMNRLRKAS 329 >gi|332980647|ref|YP_004462088.1| translation factor SUA5 [Mahella australiensis 50-1 BON] gi|332698325|gb|AEE95266.1| translation factor SUA5 [Mahella australiensis 50-1 BON] Length = 350 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 113/336 (33%), Positives = 181/336 (53%), Gaps = 28/336 (8%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 + +A+RKA + G +A PTETVYGL ++ + +A+ R++E K RP+ NPLI H+ DI Sbjct: 14 NEDAIRKAAILIRKGEVVAFPTETVYGLGANALDASAVHRIFEAKGRPSDNPLIVHICDI 73 Query: 68 SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 SM+++ V +L L + FWPGPLT+++ I TA L T R+P Sbjct: 74 SMLEEVVEHVPSKALLLMERFWPGPLTIIMK--KHKKIPYEVTAGLDTVGVRMPDHPIAL 131 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LI + G P+A PSAN SG+ S T +H++ + + I II GG K+G+EST++++ Sbjct: 132 ALIRSAGVPIAAPSANISGRPSPTKPEHVI-ADMQGRIAAIIAGGTCKVGVESTVLDLSG 190 Query: 186 EKKVRILRPGGLEIETLKRAI------SVELEYCVDETSTPQSPGMLKSHYAPRSQVRL- 238 V + RPGG+ +E L+ I S L+ E + P SPGM HY+P+++V + Sbjct: 191 NNPV-LYRPGGITLEMLEEVIGKVDTASGILKPVFAEGAVP-SPGMKYKHYSPKAKVIIV 248 Query: 239 -----RAIHVNPREALI---RFGNVPI------KNIENAIISLNLSKTGKLKEAAFNLFN 284 R I +EA + NV I K + + + + + K + A LF+ Sbjct: 249 DGPIDRVIARIKKEADAYRQKGYNVGIMATEQTKAMYSEYMVIAVGDREKPETIAAALFD 308 Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 +++ D + A + ++ +G+G+AI NR+ RAA Sbjct: 309 TLRLFDKAKADVVLAEAVDANGVGLAIMNRMVRAAG 344 >gi|182623990|ref|ZP_02951778.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens D str. JGS1721] gi|177910883|gb|EDT73237.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens D str. JGS1721] Length = 350 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 108/336 (32%), Positives = 172/336 (51%), Gaps = 32/336 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L +A E + G PTETVYGL ++ + A+++++ K RP NPLI H++D Sbjct: 14 DIKYLEEAAEIIKNGGIGVFPTETVYGLGANALDGEAVKKIFVAKGRPQDNPLIIHIADK 73 Query: 68 SMVKKH-ASVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPLSTANLKTACFRVPCG- 122 + K+ A + + L FWPGPLT++L D++S +++A L T R+P Sbjct: 74 KDIDKYVAEIPKYAQELMDKFWPGPLTIILKKKDIVSD-----VTSAGLDTVGVRMPNDE 128 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 KLIE G P+A PSAN SG+ S T+++ + + II S+IG+ESTIV+ Sbjct: 129 IALKLIELSGVPIAAPSANISGRPSPTDIER-CEEDLNGRVDFIIGAKKSEIGVESTIVD 187 Query: 183 VQCEKKVRILRPGGLEIETLKR-----AISVELEYCVDETSTPQSPGMLKSHYAPRSQVR 237 E + +LRPGG+ +E LK I + +D+ + P++PGM HYAP+++VR Sbjct: 188 ATGE-HLCVLRPGGITLEMLKDIDEGVYIDKAILTTLDKDTKPKAPGMKYKHYAPKAKVR 246 Query: 238 LRAIHVNP-----REALIRFGNVPIK----------NIENAIISLNLSKTGKLKEAAFNL 282 + +N +E + + + +K ++ N I +L L NL Sbjct: 247 MVQGPINKMVEKIKEIVHNYIDEDLKVGIMATDETISMYNEGIVKSLGTREDLTSVTKNL 306 Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERA 318 F ++ DD G I + LG+AI NRL+++ Sbjct: 307 FEMLRAFDDLGVDVIITEAFEEKDLGVAIMNRLKKS 342 >gi|166033062|ref|ZP_02235891.1| hypothetical protein DORFOR_02784 [Dorea formicigenerans ATCC 27755] gi|166027419|gb|EDR46176.1| hypothetical protein DORFOR_02784 [Dorea formicigenerans ATCC 27755] Length = 353 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 103/330 (31%), Positives = 170/330 (51%), Gaps = 25/330 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A +FL G +A PTETVYGL D+ N TA ++Y K RP+ NPLI H++++ + Sbjct: 22 IGQAGDFLKEGGLVAFPTETVYGLGADALNKTASTKIYAAKGRPSDNPLIVHITNMGALD 81 Query: 72 KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 K A + P ++ +A +WPGPLT++ T ++ +T L T R+P + LI+ Sbjct: 82 KIADIIPEVAYKVADAYWPGPLTMIFQ--KTEEVPYETTGGLDTVAVRMPSDEIARALID 139 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G +A PSAN SG+ S T +H+ + +I +I+DGG IG+ESTI+++ + Sbjct: 140 AGGGYIAAPSANTSGRPSPTKAEHV-EEDLSGKIEMILDGGAVDIGVESTILDMTVTPPM 198 Query: 190 RILRPGGLEIETLKRAIS-VELEYCV---DETSTPQSPGMLKSHYAPRS---------QV 236 ILRPG + E L I V+++ + D P++PGM HYAP++ ++ Sbjct: 199 -ILRPGAITKEMLTELIGEVDIDRTLITPDSKVKPKAPGMKYRHYAPKADLSIVEGPMEL 257 Query: 237 RLRAIHVNPREALIRFGNVPIKNIENAI------ISLNLSKTGKLKEAAFNLFNYMKIAD 290 + AI+ E + + V + + + + ++ A +L+ ++ D Sbjct: 258 VIDAINQMSAERMAKGHRVGVIGTQETVGRYKADVVKSIGTRADEATIANHLYAVLREFD 317 Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAA 320 D+ I S G+G AI NRL +AA Sbjct: 318 DAEVEYIYSESFAAGGIGSAIMNRLLKAAG 347 >gi|229829441|ref|ZP_04455510.1| hypothetical protein GCWU000342_01531 [Shuttleworthia satelles DSM 14600] gi|229791872|gb|EEP27986.1| hypothetical protein GCWU000342_01531 [Shuttleworthia satelles DSM 14600] Length = 504 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 112/335 (33%), Positives = 170/335 (50%), Gaps = 33/335 (9%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 LR+ E L G +A PTETVYGL D+ N + R++Y K RP+ NPLI H++D S ++ Sbjct: 10 LREPGEILREGGLVAFPTETVYGLGGDAENAESSRKIYAAKGRPSDNPLIVHIADFSQME 69 Query: 72 KHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCG-FTKKLI 128 A + P LA FWPGPLT++ + D PL +T L T R+P ++LI Sbjct: 70 AIAQELAPQVRILADAFWPGPLTMI---VRKNDRIPLETTGGLDTVAVRMPSHPVARQLI 126 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 + G +A PSAN SG+ S T +H+ + + +I IIDGG +IGLESTIV++ E Sbjct: 127 LSSGCMIAAPSANSSGRPSPTRAEHV-ADDLSGKIDAIIDGGPVEIGLESTIVDL-SEGI 184 Query: 189 VRILRPGGLEIETLKRAIS---VELEYCVDE---TSTPQSPGMLKSHYAPRSQVRL---- 238 +LRPG + + L+ + V ++ + E ++ P++PGM HYAPR +++ Sbjct: 185 PTVLRPGYINLRMLEEVLGQDHVRMDPGLMEENVSARPKAPGMRYKHYAPRGDLKIVEGA 244 Query: 239 -------------RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNY 285 AI + +I + + I+ + +E A +LF Sbjct: 245 ADDVVETINRLSAEAIATGSKVGVIASAETRSRYLYGDIV--EIGPRSDEEEIARHLFGV 302 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ DD G I + +G AI NRL +AAA Sbjct: 303 LRHFDDQGIEIIYSEAFDTPQMGTAIMNRLIKAAA 337 >gi|320102680|ref|YP_004178271.1| Sua5/YciO/YrdC/YwlC family protein [Isosphaera pallida ATCC 43644] gi|319749962|gb|ADV61722.1| Sua5/YciO/YrdC/YwlC family protein [Isosphaera pallida ATCC 43644] Length = 349 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 106/326 (32%), Positives = 163/326 (50%), Gaps = 13/326 (3%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + L +A + G +A PTETVYGL D+ NP A+ ++ K RP NPLI HV + + Sbjct: 25 DQLERAAHLIRQGRLVAFPTETVYGLGADATNPQAVASIFRAKGRPLSNPLIVHVREQTD 84 Query: 70 VKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 + + P L+ LA FWPGPLTLVL S ++T R P + L Sbjct: 85 ARSLTTTWPELAQALADCFWPGPLTLVLPRSSRVPDVVAGGPAMRTVGLRAPAHPVARAL 144 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PLA PSANRS +S T +H+ + + K + LI+DGG G+EST++++ + Sbjct: 145 LEACGVPLAAPSANRSEGLSPTRAEHVARAGL-KGVALILDGGPCVQGIESTVLDLSGPR 203 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 R+LRPG L+ TL++ + ELE SPG+ HYAPR+ +R+ N R Sbjct: 204 P-RLLRPGALDPATLRQVVP-ELELPDAAAPLVGSPGLAPRHYAPRAPLRVAVDPANWRG 261 Query: 248 ALI---RFG---NVPIKNIE--NAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF 299 + R G V ++ + + ++ ++ A L+ + D +G + I Sbjct: 262 GIAEAERLGVIHRVSSQDFQSNHPAHAVRIALPDDPAGFAAGLYAALHDLDQAGVTQIVV 321 Query: 300 SSIPNHGLGIAINNRLERAAAPRNQS 325 + P +A+ +RL RA+ P S Sbjct: 322 EAPPATEEWLAVRDRLRRASCPPGGS 347 >gi|268319747|ref|YP_003293403.1| hypothetical protein FI9785_1276 [Lactobacillus johnsonii FI9785] gi|262398122|emb|CAX67136.1| conserved hypothetical protein [Lactobacillus johnsonii FI9785] Length = 330 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 116/328 (35%), Positives = 165/328 (50%), Gaps = 20/328 (6%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I + + +A L G +A PTETVYGL + N A++ +Y K RP+ NPLI VS Sbjct: 5 IFNKEQISEAVALLRKGELVAFPTETVYGLGALATNEKAVKSVYAAKGRPSDNPLIVTVS 64 Query: 66 DISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 D M++K+ + P + L K FWPGPLT++L + T + T L TA FR P Sbjct: 65 DEEMMEKYVNEVPERAKKLIKHFWPGPLTIILFVKEGT-LPDAVTGGLPTAAFRCPNDEM 123 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 T LI G P+ PSAN S + S T +H+ + +I IID G ++IGLESTIV++ Sbjct: 124 THDLISELGKPIVGPSANTSTKPSPTTAEHVF-HDLKGKIAGIIDNGPTEIGLESTIVDL 182 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETST---PQSPGMLKSHYAPRSQVRLRA 240 EK +LRPG + E + + E+ T T P++PGM HYAP + V + Sbjct: 183 SVEKPT-VLRPGEITPEEISAVLGEEVLMNRGTTQTKGVPKAPGMKYRHYAPSAPVLI-- 239 Query: 241 IHVNPREALIRF------GNVPIKNIENAIISLNLSKTGK-LKEAAFNLFNYMKIADDSG 293 V+ E + G + + I S N GK + +AA NLF ++ DD Sbjct: 240 --VDKEEDFSKIQWDDETGVAALDEVLEKIDSPNKYSLGKTIDKAAHNLFGALRYFDDEN 297 Query: 294 ASSIAFSSIPNHG-LGIAINNRLERAAA 320 + +HG + A NRL +AAA Sbjct: 298 KIKRIYVQGFDHGAISAAYMNRLNKAAA 325 >gi|52843166|ref|YP_096965.1| Sua5/YciO/YrdC/YwlC family protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52630277|gb|AAU29018.1| SUA5/yciO/yrdC family:Sua5/YciO/YrdC/YwlC protein family [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 322 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 115/332 (34%), Positives = 169/332 (50%), Gaps = 20/332 (6%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 MSI +N L +A L G P+AIPTETVYGLA N AIR ++E+K RP +PLI H Sbjct: 1 MSIITTN-LNRAIHDLQQGKPVAIPTETVYGLAAPINNNAAIRAVFEMKGRPLNHPLIVH 59 Query: 64 V-SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 + S+ + K V + LA FWPGPLTLV I+PL T T R P Sbjct: 60 IASNWDLHKLVEEVPEYAHQLASKFWPGPLTLVF-YCKKDQINPLITGGQSTIAIRCPDH 118 Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 T+KL++ P+ PSAN G+IS T H+ S E+ I+DGG ++G+ESTIV Sbjct: 119 PLTQKLLQKLNIPVVAPSANPFGKISPTTALHVKQSFNDAEL-TILDGGRCRVGIESTIV 177 Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241 + +ILR G ++ +T+ I++ C + + + PG L SHY P+ + Sbjct: 178 DATNPVSYQILRHGIIDEKTIAETIAIG---CSTQKNNIRVPGKLDSHYQPQKTL----Y 230 Query: 242 HVNPREALIRF-----GNVP-IKNIENAIISLNLSKTGKL--KEAAFNLFNYMKIADDSG 293 + + E L F G V I N + + NL + +++A++L+ +++AD S Sbjct: 231 YFDQYETLSEFCQKRKGTVYVIANRQPPGVETNLFHPLGMHPEKSAYDLYYQLRLADTSD 290 Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325 A IA PN + R+ +A P +Q Sbjct: 291 AICIAIELPPNTSEWQGVRERILKAGFPYSQQ 322 >gi|227889715|ref|ZP_04007520.1| translation factor (SUA5) [Lactobacillus johnsonii ATCC 33200] gi|227849579|gb|EEJ59665.1| translation factor (SUA5) [Lactobacillus johnsonii ATCC 33200] Length = 336 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 116/328 (35%), Positives = 166/328 (50%), Gaps = 20/328 (6%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I + + +A L G +A PTETVYGL + N A++ +Y K RP+ NPLI VS Sbjct: 11 ILNKEQIPEAVALLRKGELVAFPTETVYGLGALATNEKAVKSVYAAKGRPSDNPLIVTVS 70 Query: 66 DISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GF 123 D M++K+ + P + L K FWPGPLT++L + T + T L TA FR P Sbjct: 71 DEEMMEKYVNEVPERAKKLIKHFWPGPLTIILFVKEGT-LPDAVTGGLPTAAFRCPNDDM 129 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 T LI G P+ PSAN S + S T +H+ + +I IID G ++IGLESTIV++ Sbjct: 130 THDLISELGKPIVGPSANTSTKPSPTTAEHVF-HDLKGKIAGIIDNGPTEIGLESTIVDL 188 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETST---PQSPGMLKSHYAPRSQVRLRA 240 EK +LRPG + E + + E+ T T P++PGM HYAP + V + Sbjct: 189 SVEKPT-VLRPGEITPEEISAVLGEEVLMNRGTTQTKGVPKAPGMKYRHYAPSAPVLI-- 245 Query: 241 IHVNPREALIRF------GNVPIKNIENAIISLNLSKTGK-LKEAAFNLFNYMKIADDSG 293 V+ +E + G + + I S N GK + +AA NLF ++ DD Sbjct: 246 --VDKKEDFSKIQWDDETGVAALDEVLENIDSPNKYSLGKTIDKAAHNLFGALRYFDDEN 303 Query: 294 ASSIAFSSIPNHG-LGIAINNRLERAAA 320 + +HG + A NRL +AAA Sbjct: 304 KIKRIYVQGFDHGAISAAYMNRLNKAAA 331 >gi|326203240|ref|ZP_08193105.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium papyrosolvens DSM 2782] gi|325986498|gb|EGD47329.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium papyrosolvens DSM 2782] Length = 354 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 108/336 (32%), Positives = 176/336 (52%), Gaps = 27/336 (8%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D AL A E L G+ +A PTETVYGL ++ + A+ ++++ K RP+ NPLI H++D Sbjct: 14 DKIALEPAAEALKEGMTVAFPTETVYGLGANALDGAAVSKIFKAKGRPSDNPLIVHIADR 73 Query: 68 SMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 V + S P ++ L WPGPLTLV+ ++ I TA L T R+P Sbjct: 74 EKVSELTSFIPAKAVALMDKLWPGPLTLVMK--KSSAIPREITAGLDTVAIRMPGHPVAL 131 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +LI G P+A PSAN SG+ S T +H+L + +I +I+D G S +GLEST+++V Sbjct: 132 ELIRLAGIPVAAPSANVSGKPSPTTARHVL-DDLEGKIEIIVDAGSSSVGLESTVLDVSV 190 Query: 186 EKKVRILRPGGL---EIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 + V +LRPGG+ +IE + I ++ + V + P+SPGM HY+P++ V + Sbjct: 191 DPPV-LLRPGGITPRQIEEIIGQIDIDKTIMGKVTADNVPKSPGMKYKHYSPKAHVIIVE 249 Query: 241 IHVNPR--EALIRFGNVPIKNIENAII--------------SLNLSKTGKLKEAAFNLFN 284 + + E + R IK + + ++++ + A +LF+ Sbjct: 250 SNDMDKQTEVVCRLAEKYIKEDKKVGVCSTDQTFDRYKLFETISMGDRNHPETIASSLFS 309 Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ DD I ++ +G+G+AI NR+ +AA Sbjct: 310 ILREFDDREVDIILAEAVDQNGVGLAIMNRMVKAAG 345 >gi|227510128|ref|ZP_03940177.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190333|gb|EEI70400.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 340 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 108/338 (31%), Positives = 171/338 (50%), Gaps = 32/338 (9%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I + + +A F+ G ++ PTETVYGL D+ N TA++++Y K RP+ NPLI VS Sbjct: 5 ILKKDQIEQAANFIKEGELVSFPTETVYGLGADATNETAVKKVYAAKGRPSDNPLIVTVS 64 Query: 66 DISMVKKHASVDPLSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 + MV K+ VD +S KL FWPG LT++ L + T L TA FR P Sbjct: 65 SVEMVTKY--VDHISDDAQKLIKAFWPGSLTMIFKLKPNV-LSKAVTGGLNTAAFRFPQN 121 Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 T LI G P+ PSAN SG+ S T +H+ + +I I+D G + +G+EST++ Sbjct: 122 QLTLDLITKAGVPIVGPSANTSGKPSPTTAQHVY-HDLNGKIAAILDDGPTTVGVESTVL 180 Query: 182 NVQCEKKVRILRPGGL---EIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238 ++ K ILRPG + +IE + ++ + V TP++PGM HYAP +QV + Sbjct: 181 DMSV-KTPSILRPGAVTKDDIEAVIHQNVIDELHHVGTDQTPKAPGMKYKHYAPNAQVYI 239 Query: 239 RAIHVNPREALIRFGN--------VPIKNIENAIISLNLSKTGKL-------KEAAFNLF 283 V+P ++ + V + +N I S++ ++ + A+ +LF Sbjct: 240 ----VDPEDSWLDVAKWIESHPQPVGVMAFDNVISSIDWPMNAQIVTLGSNSRTASRDLF 295 Query: 284 NYMKIADDSGASSIAFS-SIPNHGLGIAINNRLERAAA 320 ++ D+ I F+ + G+ A NRL ++A Sbjct: 296 ADLREFDNHPEIKIIFTQGLKPSGIAEAYMNRLNKSAG 333 >gi|323490905|ref|ZP_08096100.1| hypothetical protein GPDM_16096 [Planococcus donghaensis MPA1U2] gi|323395385|gb|EGA88236.1| hypothetical protein GPDM_16096 [Planococcus donghaensis MPA1U2] Length = 330 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 93/236 (39%), Positives = 134/236 (56%), Gaps = 5/236 (2%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 ++ + N+ +A E L +G +A PTETVYGL D+ N A+ +++E K RPA NPLI HV Sbjct: 11 NVDEENSYAQAVENLKSGEVVAFPTETVYGLGADATNFEAVSKIFEAKGRPADNPLIVHV 70 Query: 65 SDI-SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 S + V +L FWPG LTL++ T + + TANL+T RVP Sbjct: 71 DKKESALNYVQEVSAKALQCMDAFWPGALTLIMQAKPETFANNV-TANLQTVGIRVPNHP 129 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 KL++ PLA PSAN SG+ S T H+ + IPLI+DGG ++IG+EST+++ Sbjct: 130 VALKLLQEVKLPLAAPSANTSGKPSPTLASHV-RHDMDGRIPLILDGGATEIGIESTVLD 188 Query: 183 VQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238 CE V ILRPG + E +++ I ++ + P+SPGM HYAP + + L Sbjct: 189 TTCEPPV-ILRPGKITKEQIEQVIGTVRTSSGNKDNVPKSPGMKYMHYAPTAPLYL 243 >gi|319943122|ref|ZP_08017405.1| Sua5/YciO/YrdC/YwlC family protein [Lautropia mirabilis ATCC 51599] gi|319743664|gb|EFV96068.1| Sua5/YciO/YrdC/YwlC family protein [Lautropia mirabilis ATCC 51599] Length = 348 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 115/353 (32%), Positives = 165/353 (46%), Gaps = 51/353 (14%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 ++TD+ L +A L AG I +PTETVYGLA ++ + A+ +Y IK RPA +PLI HV Sbjct: 8 TMTDAP-LAEAAAVLQAGGVIGLPTETVYGLAANAADEQAVTSIYRIKGRPADHPLIVHV 66 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV----- 119 +D ++ A P + LA FWPGPLTLVL + P ++A T RV Sbjct: 67 ADALAAQQWAEWTPAAQRLADAFWPGPLTLVLRRRAGAP--PFASAGQDTIALRVSSHPV 124 Query: 120 ---------PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 P G T LA PSANR G+IS + H+ S + +PL++DGG Sbjct: 125 FQRLMQALAPVGITG---------LAAPSANRFGRISPSRAAHV-RSGLGSAVPLVLDGG 174 Query: 171 ISKIGLESTIVNVQCEKKVRILRPGGLEIETLK----RAISVELEYCVDETSTPQSPGML 226 S++G+ESTIV++ V +LRPGG+ ++ L + + E P+ PG L Sbjct: 175 PSEVGVESTIVDLSRGAPV-LLRPGGISLQALADCLGQPVRAADSQATREADAPRVPGAL 233 Query: 227 KSHYAPR--------------SQVRLRAIHV--NPREALIRFGNVPIKNIENAIISLNLS 270 SHYAP Q R A+ P + G + + E L Sbjct: 234 PSHYAPSVPLRLLSAGALAALLQQRATALSAAQTPVIDGLPMGRIAVWRPEPPPEQPGLF 293 Query: 271 KTGKLKE---AAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + E AA +L++ + D G +I P A+ +RL+RAAA Sbjct: 294 WRCQPTEVALAARHLYDTLHQLDALGVDAILVEQPPAEPAWRAVQDRLQRAAA 346 >gi|150015296|ref|YP_001307550.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium beijerinckii NCIMB 8052] gi|149901761|gb|ABR32594.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium beijerinckii NCIMB 8052] Length = 343 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 108/335 (32%), Positives = 169/335 (50%), Gaps = 27/335 (8%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D +R+A E + G + PTETVYGL D+ N A+ ++++ K RP NPLI HVS Sbjct: 8 DEEKIREAAECIKNGGTVVFPTETVYGLGADALNEEAVEKIFKAKGRPQDNPLIIHVSSK 67 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCG-FTK 125 + + ++ L FWPGPLT++ LS DI P +++ANL + R+P + Sbjct: 68 KLDLYAKEIPKVADELINRFWPGPLTII---LSKKDIIPNVTSANLNSIGIRMPDNEVAR 124 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 KLIE +A PSAN SG+ S T+ + + + ++ I+ G S IG+ESTIV+ Sbjct: 125 KLIELSQTTIAAPSANISGRPSPTDFQRCI-EDLDGKVDYILGGEQSDIGVESTIVDCTV 183 Query: 186 EKKVRILRPGGLEIETLKRAI-SVELEYCV----DETSTPQSPGMLKSHYAPRSQVRL-- 238 + +LRPGG+ +E L+ +E++ + E P++PGM HYAP ++V + Sbjct: 184 VPPI-VLRPGGITLEMLREVDPRIEIDKAIMEKPSENLKPKAPGMKYKHYAPNAKVTIIS 242 Query: 239 --RAIHVNPREALIRFG-----NVPIKNIENAI------ISLNLSKTGKLKEAAFNLFNY 285 R + ++ + V I +E + S+ L L A +LF Sbjct: 243 GERKKTIEKIREMVHYNIEKGKKVCILTVEENVDEYTEGTSIVLGSLSDLSTVARSLFEA 302 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ DD GA + G+G+AI NRL +AA Sbjct: 303 LRKCDDLGADLVFAEGYEEKGVGVAIMNRLNKAAG 337 >gi|259503692|ref|ZP_05746594.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus antri DSM 16041] gi|259168324|gb|EEW52819.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus antri DSM 16041] Length = 342 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 108/331 (32%), Positives = 173/331 (52%), Gaps = 27/331 (8%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 N + +A + G +A PTETVYGL D+ N A++ +Y K RP+ NPLI HV+ ++M Sbjct: 9 NQIDEAAAAIRRGELVAFPTETVYGLGADATNEPAVKNVYLAKGRPSDNPLIVHVNSVAM 68 Query: 70 VKKHASVDP-LSLHLAKLFWPGPLTLVLDL----LSTTDIHPLSTANLKTACFRVPCGF- 123 V+++A+ P + L FWPG LT++L + LS T T L T FR P Sbjct: 69 VEQYAAEIPEKARKLMAAFWPGSLTIILKIKRGALSKT-----VTGGLSTVAFRFPDNQP 123 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 T LI G P+ PSAN SG+ S T +H+ + +I I+D G +++G+EST++++ Sbjct: 124 TLDLIGKAGVPIVGPSANTSGKPSPTTAQHVY-HDLNGKITGILDDGPTRVGVESTVLDM 182 Query: 184 QCEKKVRILRPGGLEIETLKRAI-SVEL-EYCVDETSTPQSPGMLKSHYAPRSQVRL--- 238 E V ILRPG + + ++ I S++L + V + TP++PGM HYAP +QV + Sbjct: 183 STETPV-ILRPGAVTKQDIEGVIGSIDLNHHQVGKNETPKAPGMKYKHYAPSAQVYIVDD 241 Query: 239 --------RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD 290 R I P + + ++ + + ++ S + +A+ LF+ ++ D Sbjct: 242 GTDWSTVVRWIAQQPFDVGVMAEEQILQQLTLPMNAVQFSLGTGVADASARLFDGLRGFD 301 Query: 291 DS-GASSIAFSSIPNHGLGIAINNRLERAAA 320 D +I + P LG A NRL ++A Sbjct: 302 DQPNVKAIVTEAFPAKNLGRAYMNRLNKSAG 332 >gi|309791839|ref|ZP_07686326.1| Sua5/YciO/YrdC/YwlC family protein [Oscillochloris trichoides DG6] gi|308226161|gb|EFO79902.1| Sua5/YciO/YrdC/YwlC family protein [Oscillochloris trichoides DG6] Length = 347 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 90/234 (38%), Positives = 132/234 (56%), Gaps = 7/234 (2%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 ++ +++A L G +A PTETVYGL D+ NPTA+ R++ K RPA +PLI H++D+ Sbjct: 13 NTATIQEAATILATGGLVAFPTETVYGLGADALNPTAVGRIFAAKGRPAEDPLIVHLADL 72 Query: 68 S-MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 S + + P+ HLA WPGPLTLVL TA L+T RVP + Sbjct: 73 SDLARVTPHCPPVVAHLAAHCWPGPLTLVLPRGPAVPYR--VTAGLETVAVRVPAHPVAR 130 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LI G P+A PSANR G S T H+L + + I +++DGG + +G+EST++++ Sbjct: 131 ALIAAAGTPIAAPSANRFGHTSPTTAAHVL-ADLDGRIEMVLDGGPATLGVESTVLDLSA 189 Query: 186 EKKVRILRPGGLEIETLKRAIS-VELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238 +LRPGG+ +ETL+ + V L T +PG+L HYAP + + L Sbjct: 190 PIPT-LLRPGGVSLETLRDLLGEVALGGRAAPTGGQIAPGLLDRHYAPDNALHL 242 >gi|291526379|emb|CBK91966.1| Sua5/YciO/YrdC/YwlC family protein [Eubacterium rectale DSM 17629] Length = 502 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 104/336 (30%), Positives = 165/336 (49%), Gaps = 28/336 (8%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D +++A + + AG +A PTETVYGL D+ +P A +++Y K RP+ NPLI H+SD Sbjct: 14 DHKLMQEAGDLIAAGELVAFPTETVYGLGGDALDPEASKKIYSAKGRPSDNPLIVHISDF 73 Query: 68 SMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCG-FT 124 S +++ A P L+ FWPGPLT++++ D P +T + T R+P Sbjct: 74 SDLERIAKTVPEDARKLSDAFWPGPLTMIVE---KGDAVPYATTGGMDTVAVRMPNHPIA 130 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 LI G +A PSAN SG+ S T H+ + + +I +IIDGG IG+ESTI+++ Sbjct: 131 LDLIRRSGCLIAAPSANTSGRPSPTEAAHV-AEDLSGKIAMIIDGGPVGIGIESTIIDL- 188 Query: 185 CEKKVRILRPGGLEIETLKRAISVELE-----YCVDETSTPQSPGMLKSHYAPRSQV--- 236 E +LRPG + + L + + E+ D+T P++PGM HYAP++ + Sbjct: 189 TEDTPMVLRPGYITPQMLSKVLGKEVVIDPGIIAADDTRKPKAPGMKYKHYAPKADMVIV 248 Query: 237 ------------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFN 284 L A H + + + K +A + L++ A L+ Sbjct: 249 DGTRKHVIAKINELVASHRDDGKKIAVIATEETKQFYDADVVLSMGSRADEDSIAHELYR 308 Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ D+ I S +G AI NR+ +AA Sbjct: 309 ILRDCDELDVDVIFSESFSTPRIGQAIMNRMLKAAG 344 >gi|300855871|ref|YP_003780855.1| putative translation factor [Clostridium ljungdahlii DSM 13528] gi|300435986|gb|ADK15753.1| putative translation factor [Clostridium ljungdahlii DSM 13528] Length = 349 Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 116/346 (33%), Positives = 177/346 (51%), Gaps = 38/346 (10%) Query: 2 QIMSITDSNA----LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 +++ + D NA + K E+L G +AIPTETVYGLA D+ N A+++++++K RP Sbjct: 9 EVLYVKDLNANYQNIVKGAEYLKKGEVVAIPTETVYGLAADAFNENAVKKIFKVKGRPQD 68 Query: 58 NPLICHVSDISMVK---KHASVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPLSTAN 111 NPL+ H+ + V K D + A FWPG +TL+ D +S T +A Sbjct: 69 NPLLVHIYKLEQVYDICKDIHKDAEKVFDA--FWPGSVTLIFNKKDCISDT-----VSAG 121 Query: 112 LKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 +KT R P + +I+ G L PSAN SG+ S T+ +H + + +IP I+DGG Sbjct: 122 MKTVGVRFPKSEVARAIIKESGTLLVAPSANLSGKPSTTSAEHCY-NDLNGKIPCILDGG 180 Query: 171 ISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEY-----CVDETSTPQSPGM 225 IGLESTI+++ V +LRPG + ++ +++ I L Y V P++PGM Sbjct: 181 PCSIGLESTIIDMSTPDPV-LLRPGAISLDDIRKVIP-NLVYKKNLLSVKGNEIPKAPGM 238 Query: 226 LKSHYAPRSQVRL---------RAIHVNPRE--ALIRFGNVPIKNIENAIISLNLSKTGK 274 HYAP + V L + I N E A+I F +K+ +N +L Sbjct: 239 KYRHYAPDAPVTLVKGDYAKTSKWIKENANEENAVICFQEF-LKDFKNYEHVYSLGSFKT 297 Query: 275 LKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 L AA F+ ++ D S I + + GLG +I NRLE+A+A Sbjct: 298 LNAAAQKTFDLLRECDKLNISHIYVQAPKDSGLGNSIINRLEKASA 343 >gi|255525830|ref|ZP_05392759.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium carboxidivorans P7] gi|255510473|gb|EET86784.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium carboxidivorans P7] Length = 350 Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 109/342 (31%), Positives = 177/342 (51%), Gaps = 40/342 (11%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + + +A + G +A PTETVYGL ++ NP+A+++++E K RP NP+I H++D Sbjct: 14 DRDIIIEAANVIKEGGLVAFPTETVYGLGGNALNPSAVKKIFEAKGRPQDNPVIAHIADF 73 Query: 68 SMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCG-FT 124 + P ++ L + FWPGP+TL+ L ++I P ++TA LK R+P Sbjct: 74 KEINALVKEIPEVAKKLMEKFWPGPMTLI---LQKSEIVPDVTTAGLKCVGIRMPSNIIA 130 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 ++ I G P+A PSAN SG+ S T+V+ + K I II G + IG+EST+++ Sbjct: 131 REFIRACGVPIAAPSANISGRPSPTDVERCIEDMDGK-IDYIIGGEMCDIGVESTVIDCT 189 Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVD--------ETSTPQSPGMLKSHYAPRSQV 236 + V ILRPGG+ +E LK V+ + +D + P++PGM HYAP++ V Sbjct: 190 VQ-PVCILRPGGITLEMLKE---VDKDAYIDPAIMKKPDKDFKPKAPGMKYKHYAPKAHV 245 Query: 237 RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEA------------------ 278 ++ A + A I N ++N S+ + T + K+ Sbjct: 246 KIVAGDLQKTIAKI---NEIVQNYIGENKSVGIMATDETKKYYKNGIVVSLGSREDMISI 302 Query: 279 AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + NLF ++ DD G I + G+G+AI NRL+++A Sbjct: 303 SKNLFETLRSFDDKGVDVIVSEAFEEIGVGVAIMNRLQKSAG 344 >gi|169824779|ref|YP_001692390.1| translation factor [Finegoldia magna ATCC 29328] gi|167831584|dbj|BAG08500.1| translation factor [Finegoldia magna ATCC 29328] Length = 342 Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 107/331 (32%), Positives = 165/331 (49%), Gaps = 31/331 (9%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 +L KA E + G +A PTETVYGL + + A ++++++K+R NPLI HV++ MV Sbjct: 16 SLEKAAELIKNGSVVAFPTETVYGLGANGLDEEACKKIFDVKRRKRDNPLILHVTNEDMV 75 Query: 71 KKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 K +S + L WPGPLT++ + ++ + + T R P + LI Sbjct: 76 KNLSSEITEDQKKLMDNLWPGPLTIIFK--KSDKVNDVVSCGGDTVAIRNPSDEIARFLI 133 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 + G P+A PSAN+SG+ S TN + + S + EI +I+DGG IG+EST+V++ EK Sbjct: 134 DKSGCPIAAPSANKSGRPSPTNAQDVY-SDMQGEIEMILDGGSCNIGIESTVVDL-TEKP 191 Query: 189 VRILRPGGLEIETLKRAISVELEY---CVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245 ILRPG E L+ + E+ Y +D + P+SPG HYAP++ +L I N Sbjct: 192 YTILRPGFYTKEDLEEYLD-EVVYDKSLIDSNTIPKSPGQKYKHYAPKT--KLIVIKGNM 248 Query: 246 REALIRFGNVPIK----------------NIENAIISLNLSKTGKLKEAAFNLFNYMKIA 289 N+ I N EN I +SK A N+F Y++ Sbjct: 249 DNIQNYVDNLGINTDEIGFILTEETAENVNFENVKI---ISKRNDYLNFAHNIFTYLREL 305 Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 D + + +GI+I NRL+++ A Sbjct: 306 DKFNYKLLICEGVNEQKMGISIMNRLKKSCA 336 >gi|307611858|emb|CBX01573.1| hypothetical protein LPW_32601 [Legionella pneumophila 130b] Length = 322 Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 114/332 (34%), Positives = 168/332 (50%), Gaps = 20/332 (6%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 MSI +N L +A L G P+AIPTETVYGLA N AIR ++E+K RP +PLI H Sbjct: 1 MSIITTN-LNRAIHDLQQGKPVAIPTETVYGLAAPINNNAAIRAVFEMKSRPLNHPLIVH 59 Query: 64 V-SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 + S+ + V + LA FWPGPLTLV I+PL T T R P Sbjct: 60 IASNWDLHDLVEEVPEYAHQLADKFWPGPLTLVFH-CKKDQINPLITGGQSTIAIRCPDH 118 Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 T+KL++ P+ PSAN G+IS T H+ S E+ I+DGG ++G+ESTIV Sbjct: 119 PLTQKLLQKLNIPVVAPSANPFGKISPTTALHVKQSFNDAEL-TILDGGRCRVGIESTIV 177 Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241 + +ILR G ++ +T+ I++ C + + + PG L SHY P+ + Sbjct: 178 DATNPDSYQILRHGIIDEKTIAETIAIG---CSTQKNDIRVPGKLDSHYQPQKTL----Y 230 Query: 242 HVNPREALIRF-----GNVP-IKNIENAIISLNLSKTGKL--KEAAFNLFNYMKIADDSG 293 + + E L F G V I N + + NL + +++A++L+ +++AD S Sbjct: 231 YFDQYETLSEFCQKRKGTVYVIANRQPPGVETNLFHPLGMHPEKSAYDLYYQLRLADTSD 290 Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325 A IA PN + R+ +A P +Q Sbjct: 291 AICIAIELPPNTSEWQGVRERILKAGFPYSQQ 322 >gi|317130767|ref|YP_004097049.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cellulosilyticus DSM 2522] gi|315475715|gb|ADU32318.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cellulosilyticus DSM 2522] Length = 350 Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 111/311 (35%), Positives = 160/311 (51%), Gaps = 19/311 (6%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-L 83 +A PTETVYGL ++ + AI R+++ K RP+ NPLI H+S+ ++ + P S L Sbjct: 37 VAFPTETVYGLGGNALSDQAIERIFKAKGRPSDNPLIVHISNKKQLQHYVKHIPNSARKL 96 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142 FWPGPLT+VL+ + TA L T R+P LIE PLA PSAN Sbjct: 97 IDAFWPGPLTIVLE--HNKKLSTRVTAQLSTVAVRMPDHPVALALIEAANVPLAAPSANT 154 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202 SG+ S T H+ + +I IIDGG + +G+EST+V+ E V +LRPGG+ E L Sbjct: 155 SGKPSPTTADHV-RKDLAGKISTIIDGGTTGVGVESTVVDCTSE-TVMLLRPGGISKEAL 212 Query: 203 KRAIS-VELE-YCVDETSTPQSPGMLKSHYAPRSQVRL--------RAI---HVNPREAL 249 + + VE++ V TP+SPGM +HYAP + ++L R I +N + + Sbjct: 213 EEIVGVVEVDPALVAADHTPKSPGMKYTHYAPDAPLQLIDGSTDFFRKIVEDAINNGKKV 272 Query: 250 IRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGI 309 K + A + L K L A L++ ++ D + I P GLG Sbjct: 273 GVLVTEENKGLTRANQEVILGKRSDLSTVAQTLYSSLRSFDKNVVDIIFTEVFPETGLGS 332 Query: 310 AINNRLERAAA 320 AI NRL++AA Sbjct: 333 AIMNRLKKAAG 343 >gi|291526824|emb|CBK92410.1| Sua5/YciO/YrdC/YwlC family protein [Eubacterium rectale M104/1] Length = 502 Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 104/336 (30%), Positives = 165/336 (49%), Gaps = 28/336 (8%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D +++A + + AG +A PTETVYGL D+ +P A +++Y K RP+ NPLI H+SD Sbjct: 14 DHKLMQEAGDLIAAGELVAFPTETVYGLGGDALDPEASKKIYSAKGRPSDNPLIVHISDF 73 Query: 68 SMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCG-FT 124 S +++ A P L+ FWPGPLT++++ D P +T + T R+P Sbjct: 74 SDLERIAKTVPEDARKLSDAFWPGPLTMIVE---KGDAVPYATTGGMDTVAVRMPNHPIA 130 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 LI G +A PSAN SG+ S T H+ + + +I +IIDGG IG+ESTI+++ Sbjct: 131 LDLIRRSGCLIAAPSANTSGRPSPTEAAHV-AEDLSGKIAMIIDGGPVGIGIESTIIDL- 188 Query: 185 CEKKVRILRPGGLEIETLKRAISVEL-----EYCVDETSTPQSPGMLKSHYAPRSQV--- 236 E +LRPG + + L + + E+ D+T P++PGM HYAP++ + Sbjct: 189 TEDTPMVLRPGYITPQMLSKVLGKEVIIDPGIIAADDTRKPKAPGMKYKHYAPKADMVIV 248 Query: 237 ------------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFN 284 L A H + + + K +A + L++ A L+ Sbjct: 249 DGTRKHVIAKINELVASHRDDGKKIAVIATEETKQFYDADVVLSMGSRADEDSIAHELYR 308 Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ D+ I S +G AI NR+ +AA Sbjct: 309 ILRDCDELDVDVIFSESFSTPRIGQAIMNRMLKAAG 344 >gi|148361313|ref|YP_001252520.1| SUA5/yciO/yrdC family transporter:Sua5/YciO/YrdC/YwlC family transporter protein [Legionella pneumophila str. Corby] gi|296108653|ref|YP_003620354.1| putative translation factor [Legionella pneumophila 2300/99 Alcoy] gi|148283086|gb|ABQ57174.1| SUA5/yciO/yrdC family:Sua5/YciO/YrdC/YwlC protein family [Legionella pneumophila str. Corby] gi|295650555|gb|ADG26402.1| putative translation factor [Legionella pneumophila 2300/99 Alcoy] Length = 322 Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 114/332 (34%), Positives = 168/332 (50%), Gaps = 20/332 (6%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 MSI +N L +A L G P+AIPTETVYGLA N AIR ++E+K RP +PLI H Sbjct: 1 MSIITTN-LNRAIHDLQQGKPVAIPTETVYGLAAPINNNAAIRAVFEMKSRPLNHPLIVH 59 Query: 64 V-SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 + S+ + V + LA FWPGPLTLV I+PL T T R P Sbjct: 60 IASNWDLHDLVEEVPEYAHQLAGKFWPGPLTLVFH-CKKDQINPLITGGQSTIAIRCPDH 118 Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 T+KL++ P+ PSAN G+IS T H+ S E+ I+DGG ++G+ESTIV Sbjct: 119 PLTQKLLQKLNIPVVAPSANPFGKISPTTALHVKQSFNDAEL-TILDGGRCRVGIESTIV 177 Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241 + +ILR G ++ +T+ I++ C + + + PG L SHY P+ + Sbjct: 178 DATNPDSYQILRHGIIDEKTIAETIAIG---CSTQKNDIRVPGKLDSHYQPQKTL----Y 230 Query: 242 HVNPREALIRF-----GNVP-IKNIENAIISLNLSKTGKL--KEAAFNLFNYMKIADDSG 293 + + E L F G V I N + + NL + +++A++L+ +++AD S Sbjct: 231 YFDQYETLSEFCQKRKGTVYVIANRQPPGVETNLFHPLGMHPEKSAYDLYYQLRLADTSD 290 Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325 A IA PN + R+ +A P +Q Sbjct: 291 AICIAIELPPNTSEWQGVRERILKAGFPYSQQ 322 >gi|295094170|emb|CBK83261.1| Sua5/YciO/YrdC/YwlC family protein [Coprococcus sp. ART55/1] Length = 350 Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 116/349 (33%), Positives = 175/349 (50%), Gaps = 42/349 (12%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 + D +A E L G +A PTETVYGL D+ NP A R+Y K RP+ NPLI H+ Sbjct: 9 GVDDDRMYEQAAEILKRGGLVAFPTETVYGLGGDALNPDASHRIYAAKGRPSDNPLIVHI 68 Query: 65 SDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCG 122 ++ S V + A +V + L + FWPGPLT++L+ ++ P +T L T R+P Sbjct: 69 AETSSVYELAETVSDDTKKLMEAFWPGPLTIILN---KKEVVPHTTTGGLDTVAIRMPSH 125 Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 +LI+ G +A PSAN SG+ S T +H+ + I +IIDGG IG+ESTIV Sbjct: 126 PVAMRLIKDSGVYIAAPSANLSGRPSPTTAQHV-QQDMDGRIDMIIDGGAVGIGIESTIV 184 Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETST-------PQSPGMLKSHYAPRS 234 ++ ++ ILRPG + E ++ + + +D T P++PGM +HYAP+ Sbjct: 185 DMTGDRPT-ILRPGYITPEMIRDIVG---DVTIDPAITGMNNALRPKAPGMKYTHYAPKG 240 Query: 235 QV------RLRAIH-----VNPREA-------LIRFGNVPIKNIENAIISLNLSKTGKLK 276 ++ RL A V ++A L NV ++ + + N+ G K Sbjct: 241 ELSIVEGDRLAAAEKIRSLVAEKKAQGYKTAILCDTDNV---SLYDDGVCENVYDAGSKK 297 Query: 277 E---AAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 + L++ ++ DD GA I S +G AI NRL +AA R Sbjct: 298 NEITVSAGLYSLLRTCDDIGAQYIYSESFEEGDMGYAIMNRLIKAAGHR 346 >gi|54295812|ref|YP_128227.1| hypothetical protein lpl2902 [Legionella pneumophila str. Lens] gi|53755644|emb|CAH17146.1| hypothetical protein lpl2902 [Legionella pneumophila str. Lens] Length = 322 Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 113/332 (34%), Positives = 168/332 (50%), Gaps = 20/332 (6%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 MSI +N L +A L G P+AIPTETVYGLA N AIR ++E+K RP +PLI H Sbjct: 1 MSIITTN-LNRAIHDLQQGKPVAIPTETVYGLAAPINNNAAIRAVFEMKSRPLNHPLIVH 59 Query: 64 V-SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 + S+ + V + LA FWPGPLTLV I+PL T T R P Sbjct: 60 IASNWDLHDLVEEVPEYAHQLADKFWPGPLTLVFH-CKKDQINPLITGGQSTIAIRCPDH 118 Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 T+KL++ P+ PSAN G+IS T H+ S E+ I+DGG ++G+ESTIV Sbjct: 119 PLTQKLLQKLNIPVVAPSANPFGKISPTTALHVKQSFNDAEL-TILDGGRCRVGIESTIV 177 Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241 + +ILR G ++ +T+ +++ C + + + PG L SHY P+ + Sbjct: 178 DATNPDSYQILRHGIIDEKTIAETVAIG---CSTQKNDIRVPGKLDSHYQPQKTL----Y 230 Query: 242 HVNPREALIRF-----GNVP-IKNIENAIISLNLSKTGKL--KEAAFNLFNYMKIADDSG 293 + + E L F G V I N + + NL + +++A++L+ +++AD S Sbjct: 231 YFDQYETLSEFCQKRKGTVYVIANRQPPGVETNLFHPLGMHPEKSAYDLYYQLRLADTSD 290 Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325 A IA PN + R+ +A P +Q Sbjct: 291 AICIAIELPPNTSEWQGVRERILKAGFPYSQQ 322 >gi|238922539|ref|YP_002936052.1| putative translation factor (SUA5) [Eubacterium rectale ATCC 33656] gi|238874211|gb|ACR73918.1| putative translation factor (SUA5) [Eubacterium rectale ATCC 33656] Length = 502 Score = 149 bits (376), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 104/336 (30%), Positives = 165/336 (49%), Gaps = 28/336 (8%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D +++A + + AG +A PTETVYGL D+ +P A +++Y K RP+ NPLI H+SD Sbjct: 14 DHKLMQEAGDLIAAGELVAFPTETVYGLGGDALDPEASKKIYSAKGRPSDNPLIVHISDF 73 Query: 68 SMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCG-FT 124 S +++ A P L+ FWPGPLT++++ D P +T + T R+P Sbjct: 74 SDLERIAKTVPEDARKLSDAFWPGPLTMIVE---KGDAVPYATTGGMDTVAVRMPNHPIA 130 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 LI G +A PSAN SG+ S T H+ + + +I +IIDGG IG+ESTI+++ Sbjct: 131 LDLIRRSGCLIAAPSANTSGRPSPTEAAHV-AEDLSGKIAMIIDGGPVGIGIESTIIDL- 188 Query: 185 CEKKVRILRPGGLEIETLKRAISVEL-----EYCVDETSTPQSPGMLKSHYAPRSQV--- 236 E +LRPG + + L + + E+ D+T P++PGM HYAP++ + Sbjct: 189 TEDTPMVLRPGYITPQMLSKVLGKEVIIDPGIIAADDTRKPKAPGMKYKHYAPKADMVIV 248 Query: 237 ------------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFN 284 L A H + + + K +A + L++ A L+ Sbjct: 249 DGTRKHVIAKINELVASHRDDGKKIAVIATEETKQFYDADVVLSMGSRADEDSIAHELYR 308 Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ D+ I S +G AI NR+ +AA Sbjct: 309 ILRDCDELDVDVIFSESFSTPRIGQAIMNRMLKAAG 344 >gi|260424635|ref|ZP_05732759.2| Sua5/YciO/YrdC/YwlC family protein [Dialister invisus DSM 15470] gi|260402640|gb|EEW96187.1| Sua5/YciO/YrdC/YwlC family protein [Dialister invisus DSM 15470] Length = 350 Score = 149 bits (376), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 113/329 (34%), Positives = 171/329 (51%), Gaps = 22/329 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++ +++ E + AG +A PTETVYGL ++ + A +++Y K RP+ NPLI HV+DIS Sbjct: 20 NDKVKRLGEVIRAGGLVAFPTETVYGLGGNALDKEAAKKIYMAKGRPSDNPLIVHVADIS 79 Query: 69 MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA-NLKTACFRVPC-GFTK 125 V + + PL L + FWPGPLT+V DI P++T+ L+T R P + Sbjct: 80 EVSTYVKRILPLEKRLMEAFWPGPLTIV---FPKKDIVPMATSGGLRTIAIRCPAHEAAR 136 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LI G P+A PSAN S + S T +L + I +IDGG S IGLEST++ V+ Sbjct: 137 ALIRAAGVPIAGPSANISTKPSPTTADAVL-HDMDGRIEFVIDGGDSLIGLESTVIAVE- 194 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244 K+ I RPGG+ + L+ EL+ + E P++PGM HYAP + + + A ++ Sbjct: 195 NGKIIIYRPGGITRDMLEAFAPTELDTAITAEQEHPKAPGMKYRHYAPSAPLTVYAGNIE 254 Query: 245 PREALI---------RFGNVPIKNIENAIISLNL----SKTGKLKEAAFNLFNYMKIADD 291 E+ I +FG + I + N+ + G KE A NLF + ++ Sbjct: 255 AVESEILSFANKGKGKFGFFVSQETAEKIPAGNIIFVWGRRGNKKELAHNLFQGLLFFNN 314 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320 I G+G+AI NRL +A+ Sbjct: 315 HPVDHIIGEGTDGGGIGMAIMNRLTKASG 343 >gi|298242303|ref|ZP_06966110.1| Sua5/YciO/YrdC/YwlC family protein [Ktedonobacter racemifer DSM 44963] gi|297555357|gb|EFH89221.1| Sua5/YciO/YrdC/YwlC family protein [Ktedonobacter racemifer DSM 44963] Length = 359 Score = 149 bits (376), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 110/345 (31%), Positives = 166/345 (48%), Gaps = 44/345 (12%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV--- 64 + + L A L AG + PTETVYGL + P A+ +++ K+RP +PLI H+ Sbjct: 17 EEHVLAHAVTLLRAGELVVFPTETVYGLGAAALQPAAVEKIFAAKERPYSDPLIVHIASE 76 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP----LSTANLKTACFRVP 120 +DI + + S + + + FWPGPLTLVL HP L T+ L T R+P Sbjct: 77 ADIEHLVRDISEQ--ARQVMRHFWPGPLTLVL------PAHPRVPRLVTSGLDTVAIRMP 128 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 LI G P+A PSANR +S T +H+ + + +PLI+DGG S +G+EST Sbjct: 129 SHPVALGLIRALGAPVAAPSANRFMHVSPTTAQHV-EADLKGRVPLILDGGASTVGVEST 187 Query: 180 IVNVQCEKKVRILRPGGLEIETLK---------RAISVELEYCVDETSTPQSPGMLKSHY 230 I+++ E ILRPGG+ +E L+ RA S+ E +SPG + HY Sbjct: 188 ILDMSSELPT-ILRPGGVSLEALRVLLPQVQPPRARSLANPDLAHEVEAQKSPGQMLIHY 246 Query: 231 APR--------SQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKL------- 275 APR + + +R + + L R G I + ++ S + Sbjct: 247 APRVPAFLFEGASMSMRHAMLLELQRLQRQGKTVGVLIADEDVAYFQSSGASMYVLGSEE 306 Query: 276 --KEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERA 318 + A LF ++ +D+G I + P GLG+AI +RL +A Sbjct: 307 DSTKVASRLFAGLRTLEDAGVDVILCRAFPETGLGLAIRDRLLKA 351 >gi|54298977|ref|YP_125346.1| hypothetical protein lpp3044 [Legionella pneumophila str. Paris] gi|53752762|emb|CAH14197.1| hypothetical protein lpp3044 [Legionella pneumophila str. Paris] Length = 322 Score = 149 bits (376), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 114/332 (34%), Positives = 168/332 (50%), Gaps = 20/332 (6%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 MSI +N L +A L G P+AIPTETVYGLA N AIR ++E+K RP +PLI H Sbjct: 1 MSIITTN-LNRAIHDLQQGKPVAIPTETVYGLAAPINNNAAIRAVFEMKSRPLNHPLIVH 59 Query: 64 V-SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 + S+ + V + LA FWPGPLTLV I+PL T T R P Sbjct: 60 IASNWDLHDLVEEVPEYAHQLADKFWPGPLTLVFH-CKKDQINPLITGGQSTIAIRCPDH 118 Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 T+KL++ P+ PSAN G+IS T H+ S E+ I+DGG ++G+ESTIV Sbjct: 119 PLTQKLLKKLNIPVVAPSANPFGKISPTTALHVKQSFNDAEL-TILDGGRCRVGIESTIV 177 Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241 + +ILR G ++ +T+ I++ C + + + PG L SHY P+ + Sbjct: 178 DATNPDSYQILRHGIIDEKTIAETIAIG---CSTQKNDIRVPGKLDSHYQPQKTL----Y 230 Query: 242 HVNPREALIRF-----GNVP-IKNIENAIISLNLSKTGKL--KEAAFNLFNYMKIADDSG 293 + + E L F G V I N + + NL + +++A++L+ +++AD S Sbjct: 231 YFDQYETLSEFCQKRKGTVYVIANRQPPGVETNLFHPLGMHPEKSAYDLYYQLRLADTSD 290 Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325 A IA PN + R+ +A P +Q Sbjct: 291 AICIAIELPPNTSEWQGVRERILKAGFPYSQQ 322 >gi|241895236|ref|ZP_04782532.1| SUA5 family translation factor [Weissella paramesenteroides ATCC 33313] gi|241871542|gb|EER75293.1| SUA5 family translation factor [Weissella paramesenteroides ATCC 33313] Length = 342 Score = 149 bits (375), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 112/339 (33%), Positives = 172/339 (50%), Gaps = 31/339 (9%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +I ++ + +A +A + G +A PTETVYGL D+ N A+ ++Y K RP+ NPLI Sbjct: 5 KIWTVDEMDAAARAIK---RGSLVAFPTETVYGLGADAYNEKAVGKVYAAKGRPSDNPLI 61 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVL----DLLSTTDIHPLSTANLKTACF 117 HV+D V A V+ + L +WPGPLT++L D+LS T T L T Sbjct: 62 VHVADPEQVADFAIVNERAQKLMAAYWPGPLTMILPVKPDVLSMT-----VTGGLDTVAV 116 Query: 118 RVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P T++LI G PL PSAN SG+ S T KH+ + +I I+D G +KIG+ Sbjct: 117 RLPDNAATRQLIRESGKPLVGPSANTSGKPSPTLAKHVY-HDLHGKIAGILDDGPTKIGV 175 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELE---YCVDETSTPQSPGMLKSHYAPR 233 EST++++ + +LRPG + ++ I V ++ + V + TP++PGM HYAP Sbjct: 176 ESTVLDLSTDMPA-VLRPGKITPAQIESVIGVPVDSEIHRVADNETPKAPGMKYRHYAPD 234 Query: 234 SQVRLRAIHVNPREALIR-----------FGNVPIKNIENAIISLNLSKTGKLKEAAFNL 282 V + A + +A+I N IK + A + S AA L Sbjct: 235 KAVYMVAPE-DWTQAIIWMQSQVEPVGLMLTNDLIKKHQLAGMDFIWSLGDNNDTAAAKL 293 Query: 283 FNYMKIADD-SGASSIAFSSIPNHGLGIAINNRLERAAA 320 F ++ DD +I +++P + A NNRL +A+ Sbjct: 294 FAGLRYFDDKKDVQTILVAAMPQVDVNGAYNNRLGKASG 332 >gi|15896136|ref|NP_349485.1| translation factor (SUA5) [Clostridium acetobutylicum ATCC 824] gi|15025929|gb|AAK80825.1|AE007785_10 Predicted translation factor (SUA5) [Clostridium acetobutylicum ATCC 824] gi|325510290|gb|ADZ21926.1| translation factor (SUA5) [Clostridium acetobutylicum EA 2018] Length = 350 Score = 149 bits (375), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 106/340 (31%), Positives = 172/340 (50%), Gaps = 36/340 (10%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L++A EF+ G + PTETVYGL ++ + A ++++E K RP NPLI H+SD Sbjct: 14 DEQILKEAGEFIKNGKLVVFPTETVYGLGANAEDGEATKKIFEAKGRPQDNPLIIHISDF 73 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 V K ++ + L + FWPGP+TL+++ S I +++A L + R+P + Sbjct: 74 EDVDKVVRNISDSARKLMREFWPGPMTLIMEKKSI--ISDVTSAGLTSVGVRMPSDKIAR 131 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 KLI+ G +A PSAN SG+ S T+V+ + + ++ II G + GLEST+++ Sbjct: 132 KLIKFSGVSIAAPSANLSGKPSPTDVERCI-EDLNGKVDYIIGGNKCEYGLESTVIDCTV 190 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVD-------ETS-TPQSPGMLKSHYAPRSQVR 237 V ILRPG + +E +++ V+ + +D E S P++PGM HYAP++ V+ Sbjct: 191 -NPVCILRPGAITLEMVRK---VDEKAYIDPAIMAKPEPSLKPKAPGMKYKHYAPKAPVK 246 Query: 238 L-----------------RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAF 280 + I N + ++ N NAI+ ++L + Sbjct: 247 IIDGDLKKTIEKINEMVQNYIDDNKKVGIMATDETK-NNYRNAIV-ISLGSRKDIYSIGR 304 Query: 281 NLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 NLF ++ DD G I + G G+AI NRL ++A Sbjct: 305 NLFETLRDFDDCGVDVILSEAFDEEGFGVAIMNRLNKSAG 344 >gi|297623264|ref|YP_003704698.1| Sua5/YciO/YrdC/YwlC family protein [Truepera radiovictrix DSM 17093] gi|297164444|gb|ADI14155.1| Sua5/YciO/YrdC/YwlC family protein [Truepera radiovictrix DSM 17093] Length = 356 Score = 149 bits (375), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 97/247 (39%), Positives = 136/247 (55%), Gaps = 28/247 (11%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +A E L G +A PTETVYGL D+RN A+R ++ IK RPA +P+I H+ + ++ Sbjct: 12 LTEAAEALRQGRLVAFPTETVYGLGADARNEAAVREIFRIKGRPADHPVIVHLPSAAHLE 71 Query: 72 KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP----LSTANLKTACFRVPC-GFTK 125 A +V L+ LA+ FWPGPLTLVL HP T T RVP Sbjct: 72 AWAVAVPELAYALAERFWPGPLTLVLQR------HPSVLDAVTGAQATVGLRVPGHPVAL 125 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV-- 183 L++ +G +A PSANR G+IS T +H+ + + L++DGG +GLESTI++V Sbjct: 126 ALLDAFGGGVAAPSANRFGRISPTTAEHVRAE--LGDAVLVLDGGPCAVGLESTILDVSR 183 Query: 184 --QCEKKVRILRPGGLEIETLK---RAISVELEYCVDETS-------TPQSPGMLKSHYA 231 E R+LRPGG+ + L+ RA+ +E+E V + TP+ G L SHYA Sbjct: 184 VGDAEGAPRLLRPGGIALGALQEVARALGLEIEDAVQPGAGTRRGAPTPRVSGSLASHYA 243 Query: 232 PRSQVRL 238 P + RL Sbjct: 244 PATPARL 250 >gi|153956296|ref|YP_001397061.1| hypothetical protein CKL_3705 [Clostridium kluyveri DSM 555] gi|219856613|ref|YP_002473735.1| hypothetical protein CKR_3270 [Clostridium kluyveri NBRC 12016] gi|146349154|gb|EDK35690.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555] gi|219570337|dbj|BAH08321.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 350 Score = 149 bits (375), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 102/341 (29%), Positives = 180/341 (52%), Gaps = 38/341 (11%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D +++A E + G +A PTETVYGL ++ +P A+ ++++ K RP NPLI H+++I Sbjct: 14 DIEIIKEAGEIIRNGGLVAFPTETVYGLGANALDPEAVEKIFKAKGRPQDNPLIVHIAEI 73 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 +K A + P++L + FWPGP+T++L ++ + +++A+L + R+P + Sbjct: 74 EDMKPLAIDISPVALKFIQNFWPGPMTVILP--KSSIVPDITSASLDSVGIRMPSNVIAR 131 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +LI+ P+A PSAN SG+ S T+V + + ++ LI+ G + +G+EST+++ Sbjct: 132 ELIKAAKVPIAAPSANVSGKPSPTDVDRCI-EDLNGKVDLILGGSMCDVGVESTVIDCTV 190 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVD--------ETSTPQSPGMLKSHYAPRSQVR 237 ILRPGG+ +E L+ +E E +D + P+SPGM HYAP + V+ Sbjct: 191 SPSC-ILRPGGITLEMLRE---IEKEVYIDPAIMKKAEGNNRPKSPGMKYRHYAPNAPVK 246 Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKE------------------AA 279 + ++N A I N ++N + ++ + T + +E + Sbjct: 247 IVKGNLNKTIAKI---NEMVENYISENKAVGIIATDETREFYKNALVISVGSRHNMLSVS 303 Query: 280 FNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 NLF ++ DDS I + G+G+AI NRL ++A Sbjct: 304 KNLFETLRSFDDSKVDIIISEAFEEKGIGLAIMNRLNKSAG 344 >gi|118444234|ref|YP_879011.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium novyi NT] gi|118134690|gb|ABK61734.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium novyi NT] Length = 350 Score = 149 bits (375), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 105/335 (31%), Positives = 168/335 (50%), Gaps = 27/335 (8%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D +++ E + +G +A PTETVYGL ++ + A+++++ K RP NPLI H++D Sbjct: 14 DEKVMKETGEIIRSGGLVAFPTETVYGLGANALDSEAVKKIFIAKGRPQDNPLIVHIADF 73 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KK 126 +M + ++ + FWPGPLTL++ + I +++A L + R+P ++ Sbjct: 74 NMDDLVKDIPAIAKKIMDKFWPGPLTLIMK--KSDKIPDVTSAGLDSIGIRMPSSIVARE 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LI+ G P+A PSAN SG+ S TN++ + + ++ II G +GLESTIV+ E Sbjct: 132 LIKKAGVPIAAPSANISGKPSPTNIERCI-EDLDGKVEAIIGGEKCDVGLESTIVDCTVE 190 Query: 187 KKVRILRPGGLEIETLKR-----AISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241 ILRPGG+ +E L+ I + D+ P++PGM HYAP++ V++ A Sbjct: 191 PPC-ILRPGGITLEMLREIEPNIYIDPAIMKKADKNLKPKAPGMKYRHYAPKAPVKIVAG 249 Query: 242 HVNPR--------EALIRFGNV--------PIKNIENAIISLNLSKTGKLKEAAFNLFNY 285 ++ + I G V N NAI+ +L L A NLF Sbjct: 250 NLEKSIAKINEMVQNYIDDGKVVGIMSTDEHKDNYSNAIVK-SLGSRKDLNSVAHNLFKT 308 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + D I + +GIAI NRL++AA Sbjct: 309 LSEFDSEKVDIIISEAFEEEEIGIAIMNRLKKAAG 343 >gi|255731390|ref|XP_002550619.1| protein SUA5 [Candida tropicalis MYA-3404] gi|240131628|gb|EER31187.1| protein SUA5 [Candida tropicalis MYA-3404] Length = 385 Score = 149 bits (375), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 112/347 (32%), Positives = 168/347 (48%), Gaps = 36/347 (10%) Query: 5 SITDSNALRK----ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 +ITD L A E I PTETVYGLA S ++R +Y K RPA NPL Sbjct: 37 TITDEETLNNLQTAAKELTTTNNAIGFPTETVYGLAGSSLKDESVRSIYRAKNRPADNPL 96 Query: 61 ICHVSDISMVKK----HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 I H+S I +K+ + + L + FWPGPLT++L + I L TAN T Sbjct: 97 ITHISSIDQLKRKLINQEEIPSIYNKLIEKFWPGPLTILLPISKNCPISKLVTANQDTFA 156 Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R+P + LI P+A PSAN S + S T +H+ + + +IP+I+DGG +G Sbjct: 157 VRMPNHPVARALISISDTPIAAPSANASTRPSPTLAEHVY-NDLNGKIPIILDGGACDVG 215 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTP------QSPGMLKSH 229 +EST+++ + + +LRPGG+ +E +K+ E E + T ++PGM H Sbjct: 216 VESTVIDGLVDPPM-LLRPGGVSLEEIKKYGGKEWENVIIAKKTAGKLEPVKTPGMKYRH 274 Query: 230 YAPRSQVRLRAIHVNPREALIRF---GNVPIKN-------------IENAIISLNLSKTG 273 Y+P ++V L + +EA++ + N+ N +E I L K G Sbjct: 275 YSPTAKVILFVNCGDGKEAILNYLKQNNIDCNNTKIALLKSCNFVDVEGVAIIKELGKNG 334 Query: 274 KLKEAAFNLFNYMKIADDSGASS-IAFSSIPNHGLGIAINNRLERAA 319 E + NLF Y++ D+ I I G+A+ NRL +AA Sbjct: 335 --HEISHNLFKYLREVDEEDKVDLILVEGIDETNEGLAVMNRLSKAA 379 >gi|225175847|ref|ZP_03729840.1| Sua5/YciO/YrdC/YwlC family protein [Dethiobacter alkaliphilus AHT 1] gi|225168771|gb|EEG77572.1| Sua5/YciO/YrdC/YwlC family protein [Dethiobacter alkaliphilus AHT 1] Length = 355 Score = 149 bits (375), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 105/333 (31%), Positives = 173/333 (51%), Gaps = 32/333 (9%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 +A L G +A PTETVYGL ++ N A+ +++ K RP+ NPLI HV +++ Sbjct: 26 QAGRILAGGGLVAFPTETVYGLGANALNGPAVEKIFNAKGRPSDNPLIVHVDRADKIREL 85 Query: 74 A-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKKLIET 130 A ++ P + LAK FWPGPLTLV L +I P + LKT R+P L++T Sbjct: 86 AQNIPPEAWCLAKHFWPGPLTLV---LPKQEIVPREVSGGLKTVAVRIPDHPVALALLKT 142 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G P+A PSAN SG+ S T H+L + I ++DGG +G+EST+++++ + V Sbjct: 143 AGVPVAAPSANLSGRPSPTTAGHVL-DDLDGRIDAVVDGGPCGVGVESTVLSIENGQPV- 200 Query: 191 ILRPGGLEIETLKR------AISVELEYCVDETSTPQSPGMLKSHYAPRSQV-------- 236 +LRPGG+ E + + A++ E D P SPG+ +HYAP++ + Sbjct: 201 VLRPGGVTPEQITQVLGKVCAVAAWQEQSGD---APPSPGLKYTHYAPQAPMYLLLGKPE 257 Query: 237 ----RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLK---EAAFNLFNYMKIA 289 +++A+ + G + + + N + + + G+ E A NL++ ++ Sbjct: 258 AVAEKMQAMRDEFWAQSQKVGLLLSRELSNRVTADAVEVLGERDRPVELAANLYSALRRL 317 Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 D++ I + G+G A+ NR+ +AA PR Sbjct: 318 DETDCDVILAEGYNDEGMGFALMNRMAKAAGPR 350 >gi|160935044|ref|ZP_02082430.1| hypothetical protein CLOLEP_03920 [Clostridium leptum DSM 753] gi|156866497|gb|EDO59869.1| hypothetical protein CLOLEP_03920 [Clostridium leptum DSM 753] Length = 335 Score = 149 bits (375), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 111/347 (31%), Positives = 179/347 (51%), Gaps = 48/347 (13%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 M D +R+A E + G + IPTETVYGLA ++ N + R+++ K RP+ NPLI H Sbjct: 1 MLQADDKGIRRAAEIIQQGGLVGIPTETVYGLAGNALNGSVSRKIFAAKGRPSDNPLIVH 60 Query: 64 VSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA-NLKTACFRVPC 121 ++ + P + LA +WPGPLT+V L +++ P+ T+ L T R+P Sbjct: 61 IAAEEEARPLVKEFPEPARKLAAAYWPGPLTMV---LPKSELVPMETSGGLSTVAVRLPA 117 Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 +LI G PLA PS N SG+ S T +H+L + I I+DGG +G+EST+ Sbjct: 118 HPVANRLIRACGCPLAAPSGNLSGRPSPTTARHML-HDMDGRIDAILDGGPCGVGVESTV 176 Query: 181 VNVQCEKKVRILRPGGLEIETLKR---AISVE--LEYCVDETSTPQSPGMLKSHYAPRSQ 235 + + E+K R+LRPGG+ +E L+R A++V+ + + + + + SPGM HYAP+++ Sbjct: 177 LAL-AEQKPRLLRPGGVTLEMLQRVVGAVTVDPAVLHKLADGAQAASPGMKYKHYAPKAK 235 Query: 236 V--------RLRAIHVNPREA-------------LIRFGNVPIKNIENAIISLNLSKTGK 274 V R R VN ++A L++ +VP + ++ Sbjct: 236 VILVKGTAERYREF-VNSKKAPGVGALCFDEDQHLLKVPSVPYGSGNDSAAQ-------- 286 Query: 275 LKEAAFNLFNYMKIADDSGASSIAFSSIPN-HGLGIAINNRLERAAA 320 A LF+ ++ D+ + ++ P G+G+A+ NRL RAA Sbjct: 287 ----ARELFDALRELDERQEIQLVYARCPEPEGVGMAVYNRLIRAAG 329 >gi|323491653|ref|ZP_08096832.1| putative translation factor [Vibrio brasiliensis LMG 20546] gi|323314229|gb|EGA67314.1| putative translation factor [Vibrio brasiliensis LMG 20546] Length = 320 Score = 149 bits (375), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 109/335 (32%), Positives = 170/335 (50%), Gaps = 40/335 (11%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 Q +S +D + A + L +G +AIPTETVYGLA D+ NP A+++++ K RPA +PLI Sbjct: 4 QHLSASDKQDIELAKQILASGELVAIPTETVYGLAADASNPEAVKKIFAAKGRPANHPLI 63 Query: 62 CHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 H+ ++ + A P + +A FWPGP+TL+L+ P+ T L T R+P Sbjct: 64 VHIGNVEQLSDWARDIPQQAYTIADAFWPGPVTLLLN--KAPQATPVVTGGLDTIGIRMP 121 Query: 121 C-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 L+++ G +A PSAN ++S T+ +H+L +S+ +I ++DGG GLEST Sbjct: 122 AHDVFSTLLKSSGMAVAAPSANPYKKLSPTSAEHVL-NSLGGKISAVLDGGDCAHGLEST 180 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 I+++ EK RILR G + L + + E+ + T PG + SHY P ++VRL Sbjct: 181 IIDL-TEKPFRILRTGPVTAAQLSQVLGEEV--LSPKAHTVAVPGNVTSHYQPNTKVRL- 236 Query: 240 AIHVNPREALIRFGNVPIKNIENA----IISLNLS----KTG--------KLKEAAFNLF 283 V ++ IENA I L+ S KTG + + + +L+ Sbjct: 237 ---------------VTLEEIENATGDNIACLHYSPVELKTGFKSKQMPTDVAQYSHDLY 281 Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERA 318 + AD G I P A+++RL RA Sbjct: 282 RALDDADKWGCDEIWVERPPVSEAWFAVHDRLNRA 316 >gi|225378684|ref|ZP_03755905.1| hypothetical protein ROSEINA2194_04354 [Roseburia inulinivorans DSM 16841] gi|225209521|gb|EEG91875.1| hypothetical protein ROSEINA2194_04354 [Roseburia inulinivorans DSM 16841] Length = 357 Score = 148 bits (374), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 104/335 (31%), Positives = 167/335 (49%), Gaps = 26/335 (7%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D N +++A E + G +A PTETVYGL D+ +P A +++Y K RP+ NPLI H+ Sbjct: 21 DENEMKEAAELIRKGELVAFPTETVYGLGADALHPEASKKIYAAKGRPSDNPLIVHICKF 80 Query: 68 -SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 +V V + LA FWPGPLT++ + + +T ++T R+P Sbjct: 81 EELVSIAKEVPAQAEKLADAFWPGPLTMI--VWKNEKVPYETTGGMETVAIRMPKHPVAL 138 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 KLIE G +A PSAN SG+ S T H+ + +IP+I+DGG IG+ESTI+++ Sbjct: 139 KLIEESGCLIAAPSANTSGKPSPTEASHV-KLDLDGKIPMILDGGPVGIGIESTIIDL-T 196 Query: 186 EKKVRILRPGGLEIETLKRAISVELE-----YCVDETSTPQSPGMLKSHYAPRSQV---- 236 E ILRPG + E L+ + E++ D + P++PGM HYAP++ + Sbjct: 197 EDTPMILRPGYITKEMLEEVLGEEVKIDPGIIASDSLTKPKAPGMKYKHYAPKADLVLVD 256 Query: 237 --------RLRAIHVNPREALIRFGNV---PIKNIENAIISLNLSKTGKLKEAAFNLFNY 285 ++ + ++ ++ G + K+ A I +++ A +L+ Sbjct: 257 GEAENVVKKINELVAEKQKNGLKVGVIATDETKDQYQADIVVSIGARADEDAIAQHLYKI 316 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ DD +I S +G AI NRL +AA Sbjct: 317 LREFDDWNVDAIYSESFATPRIGQAIMNRLLKAAG 351 >gi|295100870|emb|CBK98415.1| translation factor SUA5 [Faecalibacterium prausnitzii L2-6] Length = 341 Score = 148 bits (374), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 109/336 (32%), Positives = 168/336 (50%), Gaps = 28/336 (8%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 D+ + +A E L G +A+PTETVYG+A D+RN A+ +++ K RP NPLI HV+ Sbjct: 10 ADTAGIARAAELLRQGELVALPTETVYGIAADARNGEAVSKIFVAKGRPQDNPLIVHVTG 69 Query: 67 ISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 M+ S P L F PGPLT+++ ++ A L T R+P Sbjct: 70 PEMLHGLVSEVPERAQLLMAAFCPGPLTIIMP--RGPEVAAECCAGLDTVGIRMPSHPVA 127 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + +IE G A PSAN SG+ S TN + + + + +PLI+DGG G+EST+V+V Sbjct: 128 RAVIEASGCAFAAPSANLSGKPSPTNAQDVF-TDMDGRLPLILDGGECDWGVESTVVSVV 186 Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYC------VDETSTPQSPGMLKSHYAPRSQVRL 238 EK + RPG + +E L+RA+ E+E + E + +SPGM HYAP++ V L Sbjct: 187 GEKPT-LFRPGHITLEDLERALGEEVEVSKAILEKLPEGAVVRSPGMKYKHYAPKADVTL 245 Query: 239 R-----------AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMK 287 H + + F K + + + G + A ++F ++ Sbjct: 246 LDGTFEQFKAYVDAHAAEDPSCLCFTGEAEK---LGVPCVEYGREGDGADQAKHIFRSLR 302 Query: 288 IADDSGASSIAFSSIPN-HGLGIAINNRLERAAAPR 322 D+ G ++ ++ P GL +A+ NRL RAAA R Sbjct: 303 ALDEQG-DAVVYARCPQKDGLSMAVYNRLIRAAAFR 337 >gi|157364237|ref|YP_001471004.1| Sua5/YciO/YrdC/YwlC family protein [Thermotoga lettingae TMO] gi|157314841|gb|ABV33940.1| Sua5/YciO/YrdC/YwlC family protein [Thermotoga lettingae TMO] Length = 338 Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 108/322 (33%), Positives = 167/322 (51%), Gaps = 17/322 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 LRKA + + G +A PTETVYGL D N +A+ ++++IK RPA NPLI H+ D ++ Sbjct: 17 LRKAAQTIKEGGVVAFPTETVYGLGADCFNISAVLKIFQIKNRPADNPLIIHIYDKKQLE 76 Query: 72 KHASVD-PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + D + ++ +FWPGP+T + ++ T L+T R+P + + Sbjct: 77 ELVEGDIEQNSYVMDVFWPGPVTFIFR--KKANVPKEVTGGLETVAIRMPSHPVAQVFLR 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G P+A PSAN SG+ S T +H++ + + + +IIDGG + +GLESTIV++ + V Sbjct: 135 LSGTPVAAPSANLSGKPSPTRAEHVI-ADLYGSVDVIIDGGETPLGLESTIVDLSRDYPV 193 Query: 190 RILRPGGLEIETLKR-----AISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244 +LRPG IE +K+ I L +E P +PGM HYAP + L Sbjct: 194 -LLRPGPATIEEIKKIVPNLYIPDFLLKKENEPVKPLAPGMAYRHYAPDKPLILVINEKK 252 Query: 245 PREALIRFGNVPIKNIENAIISLNLSKT---GKLKEA---AFNLFNYMKIADDSGASSIA 298 E L + + PI E KT GKL+E A NLF+ ++ D A S+ Sbjct: 253 LDEVLSKHPDSPIICPEEMSDRFYGRKTIIMGKLREPFTIAQNLFHVLREVDSLNAESVI 312 Query: 299 FSSIPNHGLGIAINNRLERAAA 320 + G+ ++ NRL++AA+ Sbjct: 313 VIGLEPQGILFSVMNRLKKAAS 334 >gi|300853437|ref|YP_003778421.1| putative translation factor [Clostridium ljungdahlii DSM 13528] gi|300433552|gb|ADK13319.1| putative translation factor [Clostridium ljungdahlii DSM 13528] Length = 350 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 102/338 (30%), Positives = 180/338 (53%), Gaps = 32/338 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + +A + + G +A PTETVYGL ++ NP A+++++E K RP NPLI H+SDI Sbjct: 14 DMGIVEEAGKVIKEGGLVAFPTETVYGLGANALNPDAVKKIFEAKGRPQDNPLIVHISDI 73 Query: 68 SMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 +K+ V ++ L K FWPGP+T++L + I +++A+L + R+P + Sbjct: 74 EDIKELVVDVPKIAKKLMKKFWPGPMTIILP--KSQVIPDITSASLPSIGIRMPSNIIAR 131 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +LI T P+A PSAN SG+ S T+V+ + + ++ I+ G + ++G+ESTI++ Sbjct: 132 ELIRTSKVPIAAPSANISGRPSPTDVERCI-EDLNGKVDFILGGDMCEVGVESTIIDCTV 190 Query: 186 EKKVRILRPGGLEIETLKR-AISVELEYCV----DETSTPQSPGMLKSHYAPRSQVRLRA 240 +LRPGG+ +E LK S+ ++ V D+ P++PGM HYAP++ L+ Sbjct: 191 NPAC-VLRPGGITLEALKEIDDSIYIDPAVMKKPDKNLRPKAPGMKYRHYAPKAP--LKI 247 Query: 241 IHVNPREALIRFGNVPIKNI--ENAIIS----------------LNLSKTGKLKEAAFNL 282 + + ++ + + N ++N EN ++ ++L + + NL Sbjct: 248 VKGDLKKTIEKI-NEMVQNYIGENKVVGILATDETKDFYKNGLVISLGSRNNMISISKNL 306 Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 F ++ DD I + +G+G A+ NRL ++A Sbjct: 307 FETLRSFDDKNVDIIIAEAFDENGIGTAVMNRLNKSAG 344 >gi|83591211|ref|YP_431220.1| translation factor SUA5 [Moorella thermoacetica ATCC 39073] gi|83574125|gb|ABC20677.1| translation factor SUA5 [Moorella thermoacetica ATCC 39073] Length = 352 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 111/342 (32%), Positives = 171/342 (50%), Gaps = 30/342 (8%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + + + +R A + L G +A PTETVYGL ++ + A+RR++ K RPA NPLI H++ Sbjct: 12 VPELHKIRLAAKILARGGVVAFPTETVYGLGANALDGRAVRRIFRAKGRPADNPLIVHIA 71 Query: 66 DISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG- 122 V+ A + P + L + FWPGPLTL+ + +D+ P TA L T R+P Sbjct: 72 SFQDVQDLVAYLPPRATLLMQRFWPGPLTLI---MPRSDLIPDEVTAGLDTVGLRMPSHP 128 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 + LI P+A PSAN SG+ S T +H+L + +I +IDGG S +G+EST+++ Sbjct: 129 VAQALIRATRLPIAAPSANTSGRPSPTTGQHVL-RDLRGKIDAVIDGGPSTVGVESTVLD 187 Query: 183 VQCEKKVRILRPGGLEIETLKRAIS-VELEYCV--DETSTPQSPGMLKSHYAPRSQVRLR 239 + ILRPGG+ E L+ + V ++ V + P++PGM HYAP +V L Sbjct: 188 LTSPVPT-ILRPGGITYEELQAVLGKVAIDPAVKGQQVEHPKAPGMKYKHYAPAGEVFLV 246 Query: 240 AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEA-------------------AF 280 + A +R + + L S+T + A Sbjct: 247 TGDLERVVARVRALVAAWQRRGRRVAVLATSETAPFYQDEPRPDYLEVLGSRRQPETIAA 306 Query: 281 NLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 NLF ++ D A I ++ G+G+AI NRL ++AA R Sbjct: 307 NLFGALRNCDRHHADIILAETVKEEGIGLAIMNRLRKSAANR 348 >gi|167760279|ref|ZP_02432406.1| hypothetical protein CLOSCI_02652 [Clostridium scindens ATCC 35704] gi|167662162|gb|EDS06292.1| hypothetical protein CLOSCI_02652 [Clostridium scindens ATCC 35704] Length = 352 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 109/336 (32%), Positives = 172/336 (51%), Gaps = 37/336 (11%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +R+A L G +A PTETVYGL D+ N A +++Y K RP+ NPLI H++++ + Sbjct: 21 IREAGRILREGGLVAFPTETVYGLGADALNEHAAQKIYAAKGRPSDNPLIIHITNMDDLA 80 Query: 72 KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPC-GFTKKLI 128 K S P + +A +WPGPLT++ D + I P +T L T R+P +++I Sbjct: 81 KITSFIPEAAKVIADKYWPGPLTMIFD---KSGIVPYGTTGGLDTVAVRMPSHEIAREVI 137 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 + G +A PSAN SG+ S T H+ + +I +IIDGG IG+ESTI+++ Sbjct: 138 DAGGGYIAAPSANTSGRPSPTTALHV-EEDMTGKIDMIIDGGSVDIGVESTILDMTVVPP 196 Query: 189 VRILRPGGLEIETLKRAISVELEYCVDET-------STPQSPGMLKSHYAPRSQVRLRAI 241 + ILRPG + E L I E VD+T TP++PGM HYAP+++ L + Sbjct: 197 M-ILRPGAITREMLTELIG---EVSVDKTLITPDSKKTPKAPGMKYRHYAPKAE--LTIV 250 Query: 242 HVNPREALIRFGNVPIKNIENAII--------SLNLSKTGKLK-------EA--AFNLFN 284 +E + + ++ + +E + ++ G +K EA A +L+ Sbjct: 251 EGEIKEVIAKINSLAAEKLEEGLKVGIIGTEETVGCYPAGDVKSIGTREDEATIAGSLYG 310 Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ D+ G I + G+G AI NRL +AA Sbjct: 311 ILREFDNDGVDYIYSEAFATGGIGSAIMNRLLKAAG 346 >gi|240143383|ref|ZP_04741984.1| Sua5/YciO/YrdC/YwlC family protein [Roseburia intestinalis L1-82] gi|257204651|gb|EEV02936.1| Sua5/YciO/YrdC/YwlC family protein [Roseburia intestinalis L1-82] gi|291537128|emb|CBL10240.1| Sua5/YciO/YrdC/YwlC family protein [Roseburia intestinalis M50/1] gi|291540366|emb|CBL13477.1| Sua5/YciO/YrdC/YwlC family protein [Roseburia intestinalis XB6B4] Length = 350 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 106/334 (31%), Positives = 169/334 (50%), Gaps = 32/334 (9%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI-SMV 70 +R+A E + +G +A PTETVYGL ++ +P A +R+Y K RP+ NPLI H+ ++ Sbjct: 18 MREAAEIIRSGGLVAFPTETVYGLGANALDPEASKRIYAAKGRPSDNPLIVHICRFEELL 77 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 V P + LA FWPGPLT++ + + +T + T R+P LI+ Sbjct: 78 SIAKEVPPQAEKLADAFWPGPLTMI--VWKNEKVPYETTGGMDTVAIRMPNHPVALALID 135 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G +A PSAN SG+ S T H+ + + +IP+I+DGG IG+ESTI+++ EK Sbjct: 136 ESGCMIAAPSANTSGKPSPTEAGHV-ALDLDGKIPMILDGGPVGIGIESTIIDL-TEKVP 193 Query: 190 RILRPGGLEIETLKRAISVELE-----YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244 ILRPG + E L+ + E+ D T P++PGM HYAP++ + L Sbjct: 194 MILRPGYITKEMLEEVLGEEVRIDPGIIASDSTKKPKAPGMKYKHYAPKADLVLVE---G 250 Query: 245 PREALIRFGNVPIKNIENAIISLNL---SKTGKLKEAAF---------------NLFNYM 286 +EA++ N ++ + A + + + +T L +A + +L+ + Sbjct: 251 EQEAVVAEINALVREKQAAGLKVGVVATDETESLYQADYVVTIGARSDEDAIARHLYKIL 310 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + DD +I S +G AI NRL +AA Sbjct: 311 REFDDWNVDAIYSESFSTPRIGQAIMNRLMKAAG 344 >gi|291548626|emb|CBL24888.1| Sua5/YciO/YrdC/YwlC family protein [Ruminococcus torques L2-14] Length = 508 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 107/339 (31%), Positives = 164/339 (48%), Gaps = 35/339 (10%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 + + + +A L G +A PTETVYGL D+ A ++ Y K RP+ NPLI H++D Sbjct: 14 NQDVIEEAGNVLKQGGLVAFPTETVYGLGADALKEEAAKKTYAAKGRPSDNPLIVHIADY 73 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 +KK A ++ P + LA FWPGPLT++ + + + +T L T R+P Sbjct: 74 EDLKKVAVNIPPETDALAAHFWPGPLTMIFE--KSESVPYGTTGGLDTVAVRMPSDPIAA 131 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LI G ++ PSAN SG+ S T +H+ + +I +I+DGG IGLESTI+++ Sbjct: 132 ALIRAAGGFVSAPSANTSGRPSPTTAEHV-RVDLEGKIDMILDGGAVDIGLESTILDMTV 190 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDET-------STPQSPGMLKSHYAPRSQVRL 238 E + ILRPG + + + I VDET P++PGM HYAP++++ + Sbjct: 191 EPPM-ILRPGAITADMFEEVIG---PVGVDETLVNSESKQAPKAPGMKYRHYAPKAKMMI 246 Query: 239 RAIHVNPREALIRFGNVPIK-----------------NIENAIISLNLSKTGKLKEAAFN 281 + N RE ++ + N I N+ A N Sbjct: 247 --VEGNIREEILAIRQLAYAAHREGKEVGIIATGETVQFYNYGIVKNIGTRENENTIARN 304 Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 L+ ++ D+ I S +G+G AI NRLE+AA Sbjct: 305 LYRVLREFDEEDVDLIYSESFAMNGIGKAIMNRLEKAAG 343 >gi|170090858|ref|XP_001876651.1| predicted protein [Laccaria bicolor S238N-H82] gi|164648144|gb|EDR12387.1| predicted protein [Laccaria bicolor S238N-H82] Length = 380 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 97/250 (38%), Positives = 140/250 (56%), Gaps = 20/250 (8%) Query: 3 IMSITDSNALRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 I S S AL A L D + PTETVYGL +++ A +++ K RP NPLI Sbjct: 24 ISSPDTSRALDIAAHHLRDLSQTVVFPTETVYGLGASAQSTQATSKIFSTKGRPPDNPLI 83 Query: 62 CHVSDISMVKKHASVDPLSLHLA-------KLFWPGPLTLVLDLLSTTDIHP-LSTANLK 113 HVS ++M++ ++ PL +L+ K FWPGPLTL+ DI P + TAN Sbjct: 84 VHVSSLTMLR---TLLPLGYNLSRAYEVLIKHFWPGPLTLLFP--RNADIIPTIVTANQP 138 Query: 114 TACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172 + R+P + LI + PLA PSAN SG+ S T V+H+L + ++P+I+DGG Sbjct: 139 SVAIRMPSHPVARALIASSNLPLAAPSANSSGKPSPTRVEHVL-RDLDGKVPIILDGGAC 197 Query: 173 KIGLESTIVN-VQCEKKVRILRPGGLEIETLKRAISVELEYCVD---ETSTPQSPGMLKS 228 IGLEST+V+ +Q + +RILRPGG+ +E ++R + E+ C + P +PGM Sbjct: 198 DIGLESTVVDGLQADGNIRILRPGGITVEEIERVLRQEMHDCAQIPKVLNAPTTPGMKYR 257 Query: 229 HYAPRSQVRL 238 HY+P V L Sbjct: 258 HYSPSVPVTL 267 >gi|27363877|ref|NP_759405.1| Sua5 YciO YrdC YwlC family protein [Vibrio vulnificus CMCP6] gi|27359994|gb|AAO08932.1| Sua5 YciO YrdC YwlC family protein [Vibrio vulnificus CMCP6] Length = 328 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 108/327 (33%), Positives = 170/327 (51%), Gaps = 28/327 (8%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 +S + + +A E L +G +AIPTETVYGLA D+ NP A+++++ K RPA +PLI H Sbjct: 14 LSALEQKDIDQAKEILASGELVAIPTETVYGLAADATNPDAVKKIFAAKGRPADHPLIVH 73 Query: 64 VSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC- 121 + + + A P + LA+ +WPGP+TL+L + P+ T L+T R+P Sbjct: 74 IGRVEQLTDWAIDIPEEAYTLAQAYWPGPVTLLLK--KAPHVTPVVTGGLETIGIRMPAH 131 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 L+++ G +A PSAN ++S T+ KH++ +S+ +I ++DGG GLESTIV Sbjct: 132 DVFATLLQSSGMAVAAPSANPYKKLSPTSAKHVM-NSLGGKIAAVLDGGDCAHGLESTIV 190 Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQS-----PGMLKSHYAPRSQV 236 ++ EK RILR G + L +S +E S+P S PG + SHY P ++V Sbjct: 191 DL-TEKPFRILRTGPVTAAQLSATLS-------EEVSSPVSHNVAVPGNVTSHYQPNTRV 242 Query: 237 RL-----RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291 RL A+ + + A + + P EN + S + E + +L+ + AD Sbjct: 243 RLVQASDLALVGDKKIAYLHY--TPFTAQENVEVRQMPS---SVAEYSHDLYRTLDEADK 297 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERA 318 G I P A+++RL RA Sbjct: 298 WGCEEIWVERPPVTESWFAVHDRLNRA 324 >gi|323142098|ref|ZP_08076946.1| Sua5/YciO/YrdC/YwlC family protein [Phascolarctobacterium sp. YIT 12067] gi|322413485|gb|EFY04356.1| Sua5/YciO/YrdC/YwlC family protein [Phascolarctobacterium sp. YIT 12067] Length = 368 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 115/334 (34%), Positives = 172/334 (51%), Gaps = 33/334 (9%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS---DIS 68 +++A + AG ++ PTETVYGL D NP A+ +++ K RP NPLI H++ DI+ Sbjct: 18 MQEAAALIRAGEVVSFPTETVYGLGADGLNPEAVAKIFAAKGRPNDNPLILHIAKKEDIA 77 Query: 69 MVKK--HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + +A+ L H FWPGPLTL+++ + + +A L+T R P F + Sbjct: 78 QLTTCLNANAKKLMEH----FWPGPLTLIVN--KSAIVPDAVSAGLETVAVRFPSNKFAQ 131 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 I G P+A PSAN SG+ S TN + +L K I ++DGG IGLEST+V+ Sbjct: 132 DFIRACGCPIAAPSANISGRPSPTNAQDVLEDMQGK-IAGMLDGGNCGIGLESTVVDTTS 190 Query: 186 EKKVRILRPGGLEIETLKRAI-SVELEYCV--DETSTPQSPGMLKSHYAPRSQVRL---R 239 ILRPGG+ E L + +VE++ + D+ P++PGM HYAP++ V L Sbjct: 191 AVPT-ILRPGGITYEMLTEVMGAVEIDPALQGDKNFKPKAPGMKYRHYAPKAPVYLFEGE 249 Query: 240 AIHVNPR---EALIRFGNVPI---KNIENAII------SLNLSKTGKLKEA-AFNLFNYM 286 A P+ +AL V + +E+ + L LS G +E A +LF + Sbjct: 250 ACKCLPQVIAKALAEGKTVGVLCGHELESELAELVEKQQLQLSCWGDSREQLAADLFYLL 309 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + D + I + GLG+AI NRL +AA Sbjct: 310 RDFDRTCPDVILAEGVEEDGLGLAIMNRLRKAAG 343 >gi|160945366|ref|ZP_02092592.1| hypothetical protein FAEPRAM212_02888 [Faecalibacterium prausnitzii M21/2] gi|158443097|gb|EDP20102.1| hypothetical protein FAEPRAM212_02888 [Faecalibacterium prausnitzii M21/2] Length = 344 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 106/336 (31%), Positives = 170/336 (50%), Gaps = 28/336 (8%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 D + +A + L G +A+PTETVYG+A D+RN A+R ++ K RP NPLI HV+ Sbjct: 13 ADEAGVAEAAQLLRQGQLVALPTETVYGIAADARNGAAVRDIFVAKGRPQDNPLIVHVTG 72 Query: 67 ISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 M+ S P L F PGPLT+++ ++ A L T R+P Sbjct: 73 PEMLPGLVSEVPERAQLLMAAFCPGPLTIIMP--RGPEVADECCAGLDTVGIRMPSHPVA 130 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + +I+ G A PSAN SG+ S TN + + + + +PLI+DGG +G+EST+V+V Sbjct: 131 RAVIQQSGCAFAAPSANLSGKPSPTNAQDVF-TDMDGRLPLILDGGECDVGVESTVVSVV 189 Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYC------VDETSTPQSPGMLKSHYAPRSQVRL 238 +K + RPG + +E L+RA+ E+E + E + +SPGM HYAP++ V L Sbjct: 190 GDKPT-LFRPGHITLEDLERALGEEVEVSKAILEKLPEGAVVRSPGMKYKHYAPKADVTL 248 Query: 239 R-----------AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMK 287 H + + + F ++ + + + + G + A ++F ++ Sbjct: 249 LNGTFAQFKAYVDAHKDENPSCLCFTG---ESAKLDVPCVEYGREGDGADQAKHIFRSLR 305 Query: 288 IADDSGASSIAFSSIPN-HGLGIAINNRLERAAAPR 322 D+ G + ++ P GL +A+ NRL RAAA R Sbjct: 306 ALDEQG-DGVVYARCPQKDGLSMAVYNRLIRAAAFR 340 >gi|225419868|ref|ZP_03762171.1| hypothetical protein CLOSTASPAR_06209 [Clostridium asparagiforme DSM 15981] gi|225041492|gb|EEG51738.1| hypothetical protein CLOSTASPAR_06209 [Clostridium asparagiforme DSM 15981] Length = 360 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 115/341 (33%), Positives = 166/341 (48%), Gaps = 37/341 (10%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +A E L G +A PTETVYGL ++ + A R++YE K RP+ NPLI HV+D V+ Sbjct: 19 LLEAAEILREGGLVAFPTETVYGLGANALDEAAARKIYEAKGRPSDNPLIAHVADPEDVE 78 Query: 72 KHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 P + L + FWPGPLT++ + + +T L T R+P +LI Sbjct: 79 ALVEYIPENGRKLMEAFWPGPLTMIFP--KSPAVPYGTTGGLDTVAIRMPSDPVANRLIA 136 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G P+A PSAN SG+ S T H+ + I +IIDGG IG+ESTIV+V C + Sbjct: 137 LAGVPVAAPSANTSGRPSPTTADHVW-QDMNGRIDMIIDGGPVGIGVESTIVDVSC-RIP 194 Query: 190 RILRPGGLEIETLKRAIS-VELEYCV----DETSTPQSPGMLKSHYAPRSQVRL------ 238 +LRPG + +E L+ + V+++ + P++PGM HYAPR+++ L Sbjct: 195 TVLRPGAITMEMLREVLDEVKIDPAILGPMGADMRPRAPGMKYKHYAPRAELTLVEPTEG 254 Query: 239 ---------RAIH-VN--PREALIRFGNVPI-------KNIENAIISLNLSKTGKLKEAA 279 R I VN +E L V I E ++ ++ K + A Sbjct: 255 QGEDAAAVERMIQRVNQLAQEKLAAGSRVGIICTDESRDRYEGGLVR-SIGARAKKETVA 313 Query: 280 FNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 NL+ ++ DD I S LG AI NRL +AA Sbjct: 314 HNLYAVLREFDDLKVDYIYSESFSEDHLGQAIMNRLSKAAG 354 >gi|206895712|ref|YP_002247420.1| universally conserved protein [Coprothermobacter proteolyticus DSM 5265] gi|206738329|gb|ACI17407.1| universally conserved protein [Coprothermobacter proteolyticus DSM 5265] Length = 330 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 111/323 (34%), Positives = 170/323 (52%), Gaps = 20/323 (6%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 + + +RKAC+ L G +A PTETVYGL + N A+R+++ +K RP NPLI HVSD+ Sbjct: 11 EQSLIRKACQVLLDGFVVAFPTETVYGLGAIATNEEAVRKIFHLKGRPTDNPLIVHVSDL 70 Query: 68 SMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLST-ANLKTACFRVPCG-FT 124 S V + P + + ++FWPGPL+++L + PL T L++ R+P Sbjct: 71 SQVYDLVTEVPEKARKVMEVFWPGPLSVILQAKESV---PLVTRGGLESVAIRMPAHPVA 127 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 LI G P+A PSAN+SG+ S T +H+ + LI+D G + +GLEST+V+V+ Sbjct: 128 LSLIRCAG-PIAAPSANKSGRPSPTTAEHVYQD--FGDDVLILDAGPTLVGLESTVVDVR 184 Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYC--VDETSTPQSPGMLKSHYAPRSQVRL-RAI 241 E+ +I RPG + E L+ V +EY ++E SPGM HYAP V L R + Sbjct: 185 -EEPWKIYRPGAVTREMLEAHGHVSVEYVGKIEENGAVPSPGMKYRHYAPNVPVFLFRDV 243 Query: 242 HVNPREALIRF----GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297 P I G I + + II ++L AA ++ ++ A+ G ++ Sbjct: 244 DELPPNQDITVIALDGLASILSGKPNIIFISLGS--DQHSAAARIYMALRQAEQFGRTAY 301 Query: 298 AFSSIPNHGLGIAINNRLERAAA 320 + G+GIA N R+ +AA Sbjct: 302 V-QLMDEEGIGIAYNERVRKAAG 323 >gi|167747415|ref|ZP_02419542.1| hypothetical protein ANACAC_02135 [Anaerostipes caccae DSM 14662] gi|167652777|gb|EDR96906.1| hypothetical protein ANACAC_02135 [Anaerostipes caccae DSM 14662] Length = 351 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 92/237 (38%), Positives = 134/237 (56%), Gaps = 11/237 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 + A+R+A L G +A PTETVYGL A R+YE K RP+ NPLI H+ + Sbjct: 16 NKEAIREAAGLLREGKLVAFPTETVYGLGGSGWMEEAASRIYEAKGRPSDNPLILHIGSM 75 Query: 68 SMVKKHASVDPLSLHLA-KLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FT 124 M+ + AS P A FWPGPLT++ L +D P T L + R+P Sbjct: 76 EMIDEIASCVPGPAKKAMDAFWPGPLTVI---LPKSDKVPYRVTGGLDSVAVRMPSHPAA 132 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 L+ G P+A PSAN SG+ S T +H++ + +IP+++DGG ++G+ESTIV+ Sbjct: 133 LALLREAGVPVAAPSANTSGRPSPTKAEHVV-EDLDGKIPMVLDGGKVEVGVESTIVDFT 191 Query: 185 CEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRL 238 E V ILRPG + + L++A+S E+ V E + P++PGM HYAP++Q+ L Sbjct: 192 GEVPV-ILRPGKITKDELEKALSTEVLMSTLSVKEDTVPRAPGMKYKHYAPKAQLVL 247 >gi|295105441|emb|CBL02985.1| translation factor SUA5 [Faecalibacterium prausnitzii SL3/3] Length = 341 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 106/336 (31%), Positives = 170/336 (50%), Gaps = 28/336 (8%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 D + +A + L G +A+PTETVYG+A D+RN A+R ++ K RP NPLI HV+ Sbjct: 10 ADEAGVAEAAQLLRQGQLVALPTETVYGIAADARNGAAVRNIFVAKGRPQDNPLIVHVTG 69 Query: 67 ISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 M+ S P L F PGPLT+++ ++ A L T R+P Sbjct: 70 PEMLPGLVSEVPERAQLLMAAFCPGPLTIIMP--RGPEVADECCAGLDTVGIRMPSHPVA 127 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + +I+ G A PSAN SG+ S TN + + + + +PLI+DGG +G+EST+V+V Sbjct: 128 RAVIQQSGCAFAAPSANLSGKPSPTNAQDVF-TDMDGRLPLILDGGECDVGVESTVVSVV 186 Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYC------VDETSTPQSPGMLKSHYAPRSQVRL 238 +K + RPG + +E L+RA+ E+E + E + +SPGM HYAP++ V L Sbjct: 187 GDKPT-LFRPGHITLEDLERALGEEVEVSKAILEKLPEGAVVRSPGMKYKHYAPKADVTL 245 Query: 239 R-----------AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMK 287 H + + + F ++ + + + + G + A ++F ++ Sbjct: 246 LNGTFAQFKAYVDAHKDENPSCLCFTG---ESAKLNVPCVEYGREGDGADQAKHIFRSLR 302 Query: 288 IADDSGASSIAFSSIPN-HGLGIAINNRLERAAAPR 322 D+ G + ++ P GL +A+ NRL RAAA R Sbjct: 303 ALDEQG-DGVVYARCPQKDGLSMAVYNRLIRAAAFR 337 >gi|294101619|ref|YP_003553477.1| Sua5/YciO/YrdC/YwlC family protein [Aminobacterium colombiense DSM 12261] gi|293616599|gb|ADE56753.1| Sua5/YciO/YrdC/YwlC family protein [Aminobacterium colombiense DSM 12261] Length = 326 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 110/311 (35%), Positives = 160/311 (51%), Gaps = 13/311 (4%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 +A + +G +A PTETVYGL + + A+R+++ K RP NPLI H + V++ Sbjct: 20 EAAYAIRSGKLVAFPTETVYGLGANGLDDGAVRKIFAAKGRPGDNPLILHFASSEDVEQV 79 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKKLIETY 131 A V+ + L FWPGPLTLV L + P S TA L T R+P LI+ Sbjct: 80 AYVNERAKLLMDSFWPGPLTLV---LPAKPVVPNSVTAGLGTVAVRMPSHPVAMALIKVA 136 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 G P+A PSANRSG+ S T +L + I ++ +I+DGG + +GLEST+++V V + Sbjct: 137 GVPIAAPSANRSGRPSPTEAASVL-ADIGDDVDIILDGGATDVGLESTVIDVTG-PSVVL 194 Query: 192 LRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALI- 250 LR GG+ +E L+ I E++ DE +SPG HYAP + L V L+ Sbjct: 195 LRAGGMPVERLEEVIE-EVKLVPDEAKKKRSPGTRYRHYAPLIPLLLWKNGVLRHSPLVM 253 Query: 251 --RFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLG 308 R G + IK + L KT + A LF + + G I + G+G Sbjct: 254 GKRIGYIGIKEPPFPVEEKILFKTP--ENYAQGLFLAFRTFEKKGIEVIVAEWPNSKGIG 311 Query: 309 IAINNRLERAA 319 +A+ +RL RAA Sbjct: 312 LALRDRLSRAA 322 >gi|134300997|ref|YP_001114493.1| Sua5/YciO/YrdC/YwlC family protein [Desulfotomaculum reducens MI-1] gi|134053697|gb|ABO51668.1| translation factor SUA5 [Desulfotomaculum reducens MI-1] Length = 354 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 118/343 (34%), Positives = 168/343 (48%), Gaps = 30/343 (8%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 S D + +A + G +A PTETVYGL + + A+ +Y K RP+ NPLI HV Sbjct: 14 SALDMRLINQAAAIIKRGGLVAFPTETVYGLGANGLDGKAVADIYRAKGRPSDNPLILHV 73 Query: 65 SDISMVKK-HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 +D +MV++ ++ P + L K FWPGPLTLV+ + I T L T R+P Sbjct: 74 ADTNMVRELSKNLPPKATLLMKKFWPGPLTLVVP--RASHIPREVTGGLATVAVRMPHHP 131 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHI-LSSSICKEIPLIIDGGISKIGLESTIV 181 LI+ G P+A PSAN+SG+ S TN +H+ L C I I+DGG + +GLEST++ Sbjct: 132 VALALIKASGVPIAAPSANKSGRPSPTNAEHVKLDLQGC--IDAILDGGPAGLGLESTVL 189 Query: 182 NVQCEKKVRILRPGGLEIETLKRAIS------VELEYCVDETSTPQSPGMLKSHYAPRSQ 235 ++ V ILRPGG+ E L A+ L + + P+SPGM HYAP + Sbjct: 190 DLTGAAPV-ILRPGGVTYEQLLEALGDVTIDPSALGERLSKDKAPRSPGMKYKHYAPAAP 248 Query: 236 V--------RLRAIHVNPREALIRFGN-VPIKNIENAIISL----NLSKTGKLKE---AA 279 + +++A V E L++ G V I E + K G K A Sbjct: 249 LILFEGEPEKVKAAIVERAEELLKGGKRVGILATEEHAQDYPPDSKILKIGSRKNPAGVA 308 Query: 280 FNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 LF ++ D I G+G+A+ NRL RAA R Sbjct: 309 AMLFKRLREFDQLQVDVILTEGFETKGIGLAVMNRLRRAAGER 351 >gi|225028193|ref|ZP_03717385.1| hypothetical protein EUBHAL_02465 [Eubacterium hallii DSM 3353] gi|224954505|gb|EEG35714.1| hypothetical protein EUBHAL_02465 [Eubacterium hallii DSM 3353] Length = 353 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 112/336 (33%), Positives = 166/336 (49%), Gaps = 33/336 (9%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 AL+KA E + G +A PTETVYGL D+ N A ++Y K RP+ NPLI H+ D+ V Sbjct: 19 ALKKAGEIIREGGLVAFPTETVYGLGADALNAEASAKIYAAKGRPSDNPLIVHIHDVDQV 78 Query: 71 KKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + AS P + + + FWPGPLT++L+ S + +T LKT R+P + I Sbjct: 79 YEIASEVPEAAKKVMEKFWPGPLTVILNKKSC--VPDGTTGGLKTVAIRMPSHPLARDFI 136 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 G +A PSAN SG+ S T H+ + IPLI+DGG IG+ESTI+++ + Sbjct: 137 RESGRMIAAPSANTSGRPSPTLASHVY-EDMQGRIPLILDGGAVGIGIESTIIDMSTDTP 195 Query: 189 VRILRPGGLEIETLKRAI-SVELEYCV-----DETSTPQSPGMLKSHYAPRSQVRLRAIH 242 ILRPG + + L+ + V ++ V + ++PGM HYAP+ Q+ L Sbjct: 196 T-ILRPGYITKDMLEEVLPKVNIDPAVTGRTMKKNVVAKAPGMKYRHYAPKGQLTLVE-- 252 Query: 243 VNPREALIRFGNVPIKNIE------------------NAIISLNLSKTGKLKEAAFNLFN 284 R+ +I N +K E +A I ++ K + A NL+ Sbjct: 253 -GDRDKVIARINELVKEKEEEGHKVGVIGTDETLDSYHADILRSIGSRQKPETVAANLYR 311 Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ DD + S GLG AI NR+ +AA Sbjct: 312 ILREFDDLECDYMYSESFFEQGLGNAIMNRMLKAAG 347 >gi|225570088|ref|ZP_03779113.1| hypothetical protein CLOHYLEM_06184 [Clostridium hylemonae DSM 15053] gi|225161558|gb|EEG74177.1| hypothetical protein CLOHYLEM_06184 [Clostridium hylemonae DSM 15053] Length = 350 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 104/332 (31%), Positives = 172/332 (51%), Gaps = 29/332 (8%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A + L G +A PTETVYGL D+ + A ++Y K RP+ NPLI H++++ ++ Sbjct: 18 IQEAGDILKRGGLVAFPTETVYGLGADALSEEAAAKIYAAKGRPSDNPLIVHITNMGDLE 77 Query: 72 KHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPC-GFTKKLI 128 K A P ++ +A +WPGPLT++ DI P +T L T R+P +++I Sbjct: 78 KVAEKIPAEAVKVAGKYWPGPLTMI---FHKKDIVPYGTTGGLDTVAVRMPSHEIAREVI 134 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 + G +A PSAN SG+ S T +H+ + I +I+DGG +IG+ESTI+++ Sbjct: 135 DAGGGFIAAPSANTSGRPSPTTAQHV-KEDMDGRIEMIVDGGPVEIGVESTILDMTVTPP 193 Query: 189 VRILRPGGLEIETLKRAI-SVELEYCV---DETSTPQSPGMLKSHYAPRSQVRL------ 238 + ILRPG + E L I +V +++ + D T P++PGM HYAP +++ + Sbjct: 194 M-ILRPGAVTEEMLTELIGAVAVDHTLITADSTEAPKAPGMKYRHYAPNAELVIIEGPAS 252 Query: 239 -------RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEA---AFNLFNYMKI 288 R +E + G + + + S ++ G ++ A L+ ++ Sbjct: 253 KVTEEINRLARARQKEGY-KVGIIGTEETVSGYTSGDVKSIGTREDESTIAGRLYAVLRE 311 Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 DD G + I S G+G AI NRL +AA Sbjct: 312 FDDDGVNYIYSESFATGGIGSAIMNRLLKAAG 343 >gi|198283490|ref|YP_002219811.1| Sua5/YciO/YrdC/YwlC family protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667682|ref|YP_002426096.1| Sua5/YciO/YrdC family protein [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248011|gb|ACH83604.1| Sua5/YciO/YrdC/YwlC family protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519895|gb|ACK80481.1| Sua5/YciO/YrdC family protein [Acidithiobacillus ferrooxidans ATCC 23270] Length = 328 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 100/331 (30%), Positives = 167/331 (50%), Gaps = 40/331 (12%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 A+++A E L +G + PTETVYGL D+ NP A+ R++ K RPA +PLI H++ + Sbjct: 10 AMQRAAEILRSGGLVVFPTETVYGLGADAENPAAVARIFAAKGRPADHPLIVHMARRDHL 69 Query: 71 KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + + + P + LA+ +WPGPLTL+L + T T RVP L+ Sbjct: 70 SQWSRDIPPAAFVLARRYWPGPLTLILH--RACRVPDRVTGGQDTVGLRVPDHPLALMLL 127 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E + +A PSANR GQ+S T V H+ + + I+DGG ++G+ESTI+++ + Sbjct: 128 EAFSGGIAAPSANRFGQVSPTTVAHV-REELGDAMDFILDGGPCRVGIESTILDLSGHQP 186 Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQ------SPGMLKSHYAPRSQVRL---- 238 R+LRPG + + E+E +++ PQ +PGML+SHYAPR+ + L Sbjct: 187 -RLLRPGAITL--------AEIEAVLEQPVIPQGNDALRAPGMLRSHYAPRTPLYLVPTG 237 Query: 239 -------RAIHVNPREALIRFGNVPIKNIENAIISLNL--SKTGKLKEAAFNLFNYMKIA 289 R + R ++ +P + + + ++ G +E L+ ++ Sbjct: 238 HLKAEICRRLRQGQRVGVL---AMPATQLPESCLRHHMPPHPAGWARE----LYAQLRAL 290 Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 D G + + P+ A+++RL RAA+ Sbjct: 291 DQQGLDGLLIEAPPSGADWQAVSDRLARAAS 321 >gi|302923042|ref|XP_003053592.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256734533|gb|EEU47879.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 431 Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 91/245 (37%), Positives = 135/245 (55%), Gaps = 18/245 (7%) Query: 10 NALRKAC-EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 AL KA E P+A PTETVYGL D+ +++ +Y K RP+ NPLI HV D+ Sbjct: 40 KALEKAAHELRTTPTPVAFPTETVYGLGADATRSPSVKGIYSAKGRPSDNPLISHVCDLE 99 Query: 69 MVKKH-----ASVDPLSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 M++++ DP+ L FWPGPLT++L T + P TA LKT R+P Sbjct: 100 MLREYIGQIEGGQDPIPSRYRALIERFWPGPLTILLPNPQPTKLAPEVTAGLKTFGVRMP 159 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 LI+ G PLA PSAN S + S T +H++ + I LI+DGG +G+EST Sbjct: 160 SSPLALSLIKLAGVPLAAPSANASTKPSPTTAQHVM-DDLRGRIELILDGGQCAVGVEST 218 Query: 180 IVNVQCEKKVRILRPGGLEIETLKR------AISVELEYCVDETSTPQSPGMLKSHYAPR 233 +V+ C+ V +LRPGG+ ++ L+ A+ + + + P++PGM HY+P+ Sbjct: 219 VVDGLCDPPV-VLRPGGIGLDELRSCPGWEGAVIAYKDQSEEGKAAPRAPGMKYKHYSPK 277 Query: 234 SQVRL 238 ++V L Sbjct: 278 ARVVL 282 >gi|302390585|ref|YP_003826406.1| translation factor SUA5 [Thermosediminibacter oceani DSM 16646] gi|302201213|gb|ADL08783.1| translation factor SUA5 [Thermosediminibacter oceani DSM 16646] Length = 343 Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 110/327 (33%), Positives = 166/327 (50%), Gaps = 28/327 (8%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A + G +A PTETVYGL ++ + A ++Y+ KKRP NPLI H+ + K A Sbjct: 17 AARVIKNGGLVAFPTETVYGLGANALDEKAAFKIYQAKKRPQDNPLIVHIHSPGELDKLA 76 Query: 75 SVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYG 132 S P + L + FWPGPLT+VL+ + + +T L T R+P LI G Sbjct: 77 SNVPRTARILMEKFWPGPLTIVLE--KSGAVPYGTTGGLDTVAVRMPRHPVALALIRESG 134 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192 P+A PSAN SG+ S T + + + +I+DGG ++G+EST++++ E V IL Sbjct: 135 VPIAAPSANISGRPSPTTAGDVY-EDLAGRVDIILDGGPCEVGVESTVLDLTGEVPV-IL 192 Query: 193 RPGGLEIETLKRAIS-VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIR 251 RPGG+ E L+ + VEL+ + E P+SPG HY+P+++V + P EA +R Sbjct: 193 RPGGVTREELEAVLGRVELDPGLAEGQKPKSPGQKYKHYSPKARV---LVVEGPIEAQVR 249 Query: 252 FGNVPIK---------NIENAIISLNLSKTGKL-----KEAAF----NLFNYMKIADDSG 293 K I + + +TG + +EA NLF+ ++ D G Sbjct: 250 KITELAKKLTAEGKKVGIMATVQTRGYYETGCVLSVGDREAPLTISSNLFSVLRKFDKLG 309 Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAA 320 + IP GLG+A+ NRL +AA Sbjct: 310 VEEVLAEGIPETGLGLAVMNRLRKAAG 336 >gi|320100446|ref|YP_004176038.1| translation factor SUA5 [Desulfurococcus mucosus DSM 2162] gi|319752798|gb|ADV64556.1| translation factor SUA5 [Desulfurococcus mucosus DSM 2162] Length = 357 Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 111/345 (32%), Positives = 170/345 (49%), Gaps = 41/345 (11%) Query: 8 DSNALRKACE-FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 D + KA E L+ GL +A PTETVYGL + A+ ++++ K RP NPLI HVS Sbjct: 13 DKEVIDKAAEILLNRGL-VAFPTETVYGLGAVAYYEDAVLKVFKAKMRPPDNPLIIHVSS 71 Query: 67 ISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHP----LSTANLKTACFRVPC 121 + M+ + A+ P + L + FWPGPLTL+L HP + T L T R+P Sbjct: 72 LDMLNEVATGIPDDAYRLIEKFWPGPLTLILPR------HPSIPRVVTGGLDTVAVRMPG 125 Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 KLI+ G P+A PSAN SG+ S T +H++ + + IID G + G+EST+ Sbjct: 126 HPVALKLIDATGRPVAAPSANISGRPSPTTGEHVI-RDLMGRVDAIIDAGETFFGVESTV 184 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISV-----ELEYCVDETSTPQSPGMLKSHYAPRSQ 235 VN+ + V +LRPG +E +++A+ E + + +PGM HY+P ++ Sbjct: 185 VNILEDPPV-LLRPGAYPVEEVEKALGKKIVIPEFARGLAYSEIALAPGMKYRHYSPEAK 243 Query: 236 VRL-------RAIHVNPREALIRFGNVP-------------IKNIENAIISLNLSKTGKL 275 + L I EA G V +++ N L L Sbjct: 244 LILVEAEGSYEYIAGRVIEAARSLGGVGELCVISSSETMHYYRSLSNVKAVFTLGSRVNL 303 Query: 276 KEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 E A NLF +++ D++G + S P G+G+A+ NRL +A++ Sbjct: 304 YEVARNLFKVLRLVDEAGCRVVFSESFPETGIGLAVMNRLRKASS 348 >gi|268317144|ref|YP_003290863.1| Sua5/YciO/YrdC/YwlC family protein [Rhodothermus marinus DSM 4252] gi|262334678|gb|ACY48475.1| Sua5/YciO/YrdC/YwlC family protein [Rhodothermus marinus DSM 4252] Length = 317 Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 110/317 (34%), Positives = 167/317 (52%), Gaps = 19/317 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + G +A PTETVYGL D+ NP A+R+++E K RP NPLI H+ + + Sbjct: 12 VHEAAALIRRGELVAFPTETVYGLGADAFNPEAVRKIFEAKGRPLDNPLIVHIVHLDQLA 71 Query: 72 KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129 V + + F+PGPLTLVL D+ TA L T R+P + +E Sbjct: 72 HLVRDVPEAARRFMERFFPGPLTLVLP--RHPDVPDEVTAGLPTVGVRMPRHPVAQAFLE 129 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G P+A PSANRSG+ S T + + + + I I+ G S +GLEST+V+ + V Sbjct: 130 ACGTPVAAPSANRSGRPSPTRWEAVY-ADLNGRIACILQGDRSDMGLESTVVDCTGSEPV 188 Query: 190 RILRPGGLEIETLKRAISVELEYCVDETS-TPQSPGMLKSHYAPRSQVRL-----RAIHV 243 +LR G + +E L+ + E DETS +SPG HYAP+++V L A+ Sbjct: 189 -VLRAGAVPLEALREVVP-ETRLVGDETSLKARSPGTRYRHYAPQARVVLVDHPDEAV-P 245 Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303 +PR A I G P + E A + + ++ A+ LF++ + D + I +P Sbjct: 246 DPRHAYI--GLTPPAHPE-AFGACCVCP--DVETYAYELFDFFRRCDAQNCTRIYAQRVP 300 Query: 304 NHGLGIAINNRLERAAA 320 + GLG+A+ +RLERAA+ Sbjct: 301 HTGLGLALMDRLERAAS 317 >gi|329667596|gb|AEB93544.1| hypothetical protein LJP_1222c [Lactobacillus johnsonii DPC 6026] Length = 330 Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 115/328 (35%), Positives = 163/328 (49%), Gaps = 20/328 (6%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I + + +A L G +A PTETVYGL + N A++ +Y K RP+ NPLI VS Sbjct: 5 IFNKEQIPEAVALLRKGKLVAFPTETVYGLGALATNEKAVKSVYAAKGRPSDNPLIVTVS 64 Query: 66 DISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GF 123 D M++ + S P + L K FWPGPLT++L + T + T L TA FR P Sbjct: 65 DEQMMENYVSEVPERAKKLIKHFWPGPLTIILFVKEGT-LPDAVTGGLPTAAFRCPNDDM 123 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 T LI G P+ PSAN S + S T +H+ + +I IID G ++IGLESTIV++ Sbjct: 124 THDLISGLGKPIVGPSANTSTKPSPTTAEHVF-HDLKGKIAGIIDNGPTEIGLESTIVDL 182 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETST---PQSPGMLKSHYAPRSQVRLRA 240 EK +LRPG + E + + E+ T T P++PGM HYAP + V + Sbjct: 183 SVEKPT-VLRPGEITPEEISAVLGEEVLMNRGTTQTKGVPKAPGMKYRHYAPSAPVLI-- 239 Query: 241 IHVNPREALIRF------GNVPIKNIENAIISLNLSKTGK-LKEAAFNLFNYMKIADDSG 293 V+ E + G + + I S N GK + +AA NLF ++ D Sbjct: 240 --VDKEEDFSKIQWDDETGVAALDEVLEKIDSPNKYSLGKTIDKAAHNLFGALRYFDGED 297 Query: 294 ASSIAFSSIPNHG-LGIAINNRLERAAA 320 + +HG + A NRL +AAA Sbjct: 298 KIKRIYVQGFDHGAISAAYMNRLNKAAA 325 >gi|42518857|ref|NP_964787.1| hypothetical protein LJ0932 [Lactobacillus johnsonii NCC 533] gi|41583143|gb|AAS08753.1| hypothetical protein LJ_0932 [Lactobacillus johnsonii NCC 533] Length = 330 Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 115/328 (35%), Positives = 163/328 (49%), Gaps = 20/328 (6%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I + + +A L G +A PTETVYGL + N A++ +Y K RP+ NPLI VS Sbjct: 5 IFNKEQIPEAVALLRKGELVAFPTETVYGLGALATNEKAVKSVYAAKGRPSDNPLIVTVS 64 Query: 66 DISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GF 123 D M++ + S P + L K FWPGPLT++L + T + T L TA FR P Sbjct: 65 DEQMMENYVSEVPERAKKLIKHFWPGPLTIILFVKEGT-LPDAVTGGLPTAAFRCPNDDM 123 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 T LI G P+ PSAN S + S T +H+ + +I IID G ++IGLESTIV++ Sbjct: 124 THDLISGLGKPIVGPSANTSTKPSPTTAEHVF-HDLKGKIAGIIDNGPTEIGLESTIVDL 182 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETST---PQSPGMLKSHYAPRSQVRLRA 240 EK +LRPG + E + + E+ T T P++PGM HYAP + V + Sbjct: 183 SVEKPT-VLRPGEITPEEISAVLGEEVLMNRGTTQTKGVPKAPGMKYRHYAPSAPVLI-- 239 Query: 241 IHVNPREALIRF------GNVPIKNIENAIISLNLSKTGK-LKEAAFNLFNYMKIADDSG 293 V+ E + G + + I S N GK + +AA NLF ++ D Sbjct: 240 --VDKEEDFSKIQWDDETGVAALDEVLEKIDSPNKYSLGKTIDKAAHNLFGALRYFDGED 297 Query: 294 ASSIAFSSIPNHG-LGIAINNRLERAAA 320 + +HG + A NRL +AAA Sbjct: 298 KIKRIYVQGFDHGAISAAYMNRLNKAAA 325 >gi|312869583|ref|ZP_07729734.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus oris PB013-T2-3] gi|311094869|gb|EFQ53162.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus oris PB013-T2-3] Length = 354 Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 102/327 (31%), Positives = 170/327 (51%), Gaps = 19/327 (5%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 N + +A + G +A PTETVYGL D+ N A++ +Y K RP+ NPLI HV+ ++M Sbjct: 21 NQIDEAAAAIQRGELVAFPTETVYGLGADATNEPAVKNVYLAKGRPSDNPLIVHVNSVAM 80 Query: 70 VKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127 V+K+A+ P + L FWPG LT++L + + T L T FR P T L Sbjct: 81 VEKYAAEIPANARKLMDAFWPGSLTIILKIKKGA-LSKTVTGGLSTVAFRFPDNQPTLDL 139 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I G P+ PSAN SG+ S T +H+ + +I I+D G +++G+EST++++ Sbjct: 140 IGKAGVPIVGPSANTSGKPSPTTAQHVY-HDLNGKITGILDDGPTRVGVESTVLDMSTAT 198 Query: 188 KVRILRPGGLEIETLKRAI-SVEL-EYCVDETSTPQSPGMLKSHYAPRSQVRL------- 238 V ILRPG + + ++ I S++L + V + TP++PGM HYAP +QV + Sbjct: 199 PV-ILRPGAVTKQDIEGVIGSIDLNHHQVGKNETPKAPGMKYKHYAPSAQVYIVNEGTDW 257 Query: 239 ----RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDS-G 293 + + P + + ++ + + ++ S +++A+ LF+ ++ DD Sbjct: 258 AKVAKWVAQQPFDVGVMAEERILQQLTLPMNAVQFSLGTGVEDASARLFDGLRGFDDQPN 317 Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAA 320 +I + LG A NRL ++A Sbjct: 318 VKAIVTEAFTAKNLGRAYMNRLNKSAG 344 >gi|312793262|ref|YP_004026185.1| sua5/ycio/yrdc/ywlc family protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180402|gb|ADQ40572.1| Sua5/YciO/YrdC/YwlC family protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 348 Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 117/335 (34%), Positives = 163/335 (48%), Gaps = 27/335 (8%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L KA L G +A PTETVYGL ++ A+ +++ K RP NPLI HVS Sbjct: 12 DYKKLEKAALILREGGLVAFPTETVYGLGANALLKDAVDKIFWAKGRPQDNPLIVHVSSK 71 Query: 68 SMVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FT 124 M++ A + D L + FWPGPLT+V L D+ P + TA L T R+P Sbjct: 72 DMLEMCAEITDERVYMLIERFWPGPLTIV---LPKKDVIPENVTAGLSTVGVRMPANKIA 128 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 +LI G P+A PSAN SG+ S T KH++ + K + +IIDGG GLEST+V++ Sbjct: 129 LELIRLSGVPVAAPSANVSGKPSPTEAKHVIEDLMGK-VDVIIDGGKCSFGLESTVVDLS 187 Query: 185 CEKKVRILRPGGLEIETLKRAIS-VELEYCVDETST---PQSPGMLKSHYAP-------R 233 EK V ILRPG + LK + +E V E T P+SPGM HYAP + Sbjct: 188 GEKAV-ILRPGAISYFALKEVLGDIEYSKSVVEGLTGTVPRSPGMKYKHYAPDAKLIIVK 246 Query: 234 SQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKL--------KEAAFNLFNY 285 ++ R +N + + F + + + N KL KE NLF+ Sbjct: 247 GRIDKRIDKINEMKKKLEFKGYNVGILCFYETAHNFDSQYKLILGSMFDAKECGRNLFSI 306 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ + G I +A+ NRL +AAA Sbjct: 307 LRKFNQLGVDYILCEWGEFDLEFLALENRLYKAAA 341 >gi|313905026|ref|ZP_07838396.1| Sua5/YciO/YrdC/YwlC family protein [Eubacterium cellulosolvens 6] gi|313470096|gb|EFR65428.1| Sua5/YciO/YrdC/YwlC family protein [Eubacterium cellulosolvens 6] Length = 355 Score = 146 bits (368), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 115/338 (34%), Positives = 171/338 (50%), Gaps = 33/338 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D AL+KA E L G +A PTETVYGL ++ +P A RR+Y K RP+ NPLI H++D Sbjct: 15 DMEALKKAGEILAGGGLVAFPTETVYGLGGNALDPEASRRIYAAKGRPSDNPLIVHIADW 74 Query: 68 SMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCG-FT 124 + S P + LA +WPGPLT++ + +++ P +T L+T R+P Sbjct: 75 DSLTPIVSRIPEKAKKLADAYWPGPLTMIFE---KSELVPYETTGGLETVAVRLPANKVA 131 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 ++I G +A PSAN SG+ S T H+ + I +IIDGG IGLESTIV+ Sbjct: 132 VEMIRQAGGYVAAPSANTSGRPSPTLASHV-EEDLGDRIDMIIDGGQVNIGLESTIVDFT 190 Query: 185 CEKKVRILRPGGLEIETLKRAIS-VELEYCVDETST---PQSPGMLKSHYAPRSQVRL-- 238 E V ILRPG L E L+ + V ++ + +T P++PGM HYAP++ + + Sbjct: 191 EEIPV-ILRPGFLNKEMLEEVLGEVRIDPGIMAENTHIRPKAPGMRYKHYAPKADLAIVE 249 Query: 239 ---RAIHVNPREALIRFGNVPIKNIENAIISLNLSKT-------------GKLKEAAFNL 282 A+ RE L+R G + + +I S++ + A +L Sbjct: 250 GAPAAVFSKIRE-LVREGIAKEQRV--GVICTEESRSEYPEGIVRCIGSRADDRTIARHL 306 Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + ++ D G +I S +G AI NRL +AA Sbjct: 307 YEILRDFDADGVDAIYSESFETPRMGQAIMNRLIKAAG 344 >gi|256545368|ref|ZP_05472731.1| Sua5/YciO/YrdC/YwlC family protein [Anaerococcus vaginalis ATCC 51170] gi|256398929|gb|EEU12543.1| Sua5/YciO/YrdC/YwlC family protein [Anaerococcus vaginalis ATCC 51170] Length = 345 Score = 146 bits (368), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 112/331 (33%), Positives = 175/331 (52%), Gaps = 23/331 (6%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS-D 66 D N L A E + G +A PTETVYGL D NP A +++++ K RP NPLI H+ D Sbjct: 14 DENILNHAAEIIKKGELVAFPTETVYGLGADGLNPKAAKKIFKAKNRPEDNPLILHIDED 73 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + + VD + L K WPGPLT++L S I + T T R P + Sbjct: 74 YKLDELVEKVDDRTKFLIKNLWPGPLTVILKKSSI--IPDIITGGGDTVAVRRPKDKLAR 131 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 + I+ P+A PSAN SG+ S TN K + + IPLIIDGG S IG+EST++++ Sbjct: 132 EFIKYCNTPIAAPSANISGRPSPTNAKDVY-YDMNGRIPLIIDGGSSDIGIESTVIDMSL 190 Query: 186 EKKVRILRPGGLEIETLKRAI-SVEL-EYCVDETSTPQSPGMLKSHYAPRSQVRL----R 239 E ILRPG E +K+ I +V L + VD++ P+SPG HYAP++++++ + Sbjct: 191 ENPC-ILRPGYYTYEYIKKFIPNVCLDDSLVDDSKVPRSPGQKYKHYAPKAEMKVFVGDK 249 Query: 240 AIHVNPREALIRFGN--------VPIKNIE--NAIISLNLSKTGKLKEAAFNLFNYMKIA 289 ++ ++ +++ N V K+ E ++ +L+L L E + LF ++ Sbjct: 250 SVE-KIKDLALKYKNEGKKVGILVFDKDTEKFSSFTTLSLGNKDNLIEMSHVLFEALRDL 308 Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 D I + + GLG +I NR++++A+ Sbjct: 309 DRKNVDIILAEGVKDIGLGKSIMNRMKKSAS 339 >gi|147679163|ref|YP_001213378.1| putative translation factor [Pelotomaculum thermopropionicum SI] gi|146275260|dbj|BAF61009.1| putative translation factor [Pelotomaculum thermopropionicum SI] Length = 385 Score = 146 bits (368), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 109/338 (32%), Positives = 170/338 (50%), Gaps = 27/338 (7%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 ++ A+R+A L G +A PTETVYGL ++ + A+ R++E K RP+ NPLI HV+ Sbjct: 44 EAEAVREAGLILRGGGLVAFPTETVYGLGANALDGKAVARIFEAKGRPSDNPLIVHVAAA 103 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 V + + L ++FWPGPLTLVL + + TA L T R+P Sbjct: 104 EEVGALVRGISDRARLLMEIFWPGPLTLVLP--AGKAVPAGVTAGLDTVAVRMPDHPVAA 161 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LI G P+A PSAN SG+ S T +H+L + I I+DGG + +G+EST+++V Sbjct: 162 ALIRAAGVPVAAPSANISGRPSPTTAEHVL-QDLNGRIEAILDGGPAGLGVESTVLDVTV 220 Query: 186 EKKVRILRPGGLEIETLKRAI-SVELEYCVDETSTP-----QSPGMLKSHYAPRS----- 234 + ILRPGG+ E L+ + +VE++ +SPGM HYAPR+ Sbjct: 221 PVPL-ILRPGGVTPEELREVLGTVEVDPSAAAGLGKAAGRYRSPGMKYIHYAPRAPLVLI 279 Query: 235 -------QVRLRAIHVNPREALIRFGNVPI---KNIENAIISLNLSKTGKLKEAAFNLFN 284 ++R + + A R G + + +A + + + GK + A L+ Sbjct: 280 EGRPDAVAAKIRELAGEQQAAGRRVGILTYADSGDFSSAGVVVLAGQRGKPETVAAGLYA 339 Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 ++ D+ G I + G+G+A+ NRL +AA R Sbjct: 340 ALRRFDELGVDLILAEGVEEGGVGLAVMNRLRKAAGGR 377 >gi|297588759|ref|ZP_06947402.1| Sua5/YciO/YrdC/YwlC family protein [Finegoldia magna ATCC 53516] gi|297574132|gb|EFH92853.1| Sua5/YciO/YrdC/YwlC family protein [Finegoldia magna ATCC 53516] Length = 342 Score = 145 bits (367), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 100/327 (30%), Positives = 165/327 (50%), Gaps = 23/327 (7%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 AL KA + + G +A PTETVYGL + + A ++++++K+R NPLI HV++ MV Sbjct: 16 ALEKAADLIKNGSVVAFPTETVYGLGANGLDEEACKKIFDVKRRKRDNPLILHVTNEEMV 75 Query: 71 KKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + +S + L WPGPLT++ + ++ + + T R P + LI Sbjct: 76 RNLSSEITEDQKKLMDNLWPGPLTIIFK--KSDKVNDVVSCGGNTVAIRNPSDEIARFLI 133 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 + P+A PSAN+SG+ S TN + + S + EI +I+DGG IG+EST+V++ EK Sbjct: 134 DKSDCPIAAPSANKSGRPSPTNAQDVY-SDMQGEIEMILDGGSCNIGIESTVVDL-TEKP 191 Query: 189 VRILRPGGLEIETLKRAISVELEY---CVDETSTPQSPGMLKSHYAPRS----------- 234 ILRPG E L+ + E+ Y +D + P+SPG HYAP++ Sbjct: 192 YTILRPGFYTKEDLEEYLD-EVVYDKSLIDSKTIPKSPGQKYKHYAPKTKLIVIKGNMDN 250 Query: 235 -QVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293 Q + ++ +N E +N+ + + +SK A N+F Y++ D Sbjct: 251 IQNYVDSLEINTDEIGFILTEETAQNVNFKNVKI-ISKRNDYLNFAHNIFAYLRELDKLN 309 Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAA 320 + + +GI+I NRL+++ A Sbjct: 310 YKLLICEGVNEQKMGISIMNRLKKSCA 336 >gi|312877224|ref|ZP_07737193.1| Sua5/YciO/YrdC/YwlC family protein [Caldicellulosiruptor lactoaceticus 6A] gi|311796033|gb|EFR12393.1| Sua5/YciO/YrdC/YwlC family protein [Caldicellulosiruptor lactoaceticus 6A] Length = 348 Score = 145 bits (367), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 117/335 (34%), Positives = 163/335 (48%), Gaps = 27/335 (8%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L KA L G +A PTETVYGL ++ A+ +++ K RP NPLI HVS Sbjct: 12 DYKKLEKAALILREGGLVAFPTETVYGLGANALLKDAVDKIFWAKGRPQDNPLIIHVSSK 71 Query: 68 SMVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FT 124 M++ A + D L + FWPGPLT+V L D+ P + TA L T R+P Sbjct: 72 DMLEMCAEITDERVYMLIERFWPGPLTIV---LPKKDVIPENVTAGLSTVGVRMPANKIA 128 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 +LI G P+A PSAN SG+ S T KH++ + K + +IIDGG GLEST+V++ Sbjct: 129 LELIRLSGIPVAAPSANVSGKPSPTEAKHVIEDLMGK-VDVIIDGGKCSFGLESTVVDLS 187 Query: 185 CEKKVRILRPGGLEIETLKRAIS-VELEYCVDETST---PQSPGMLKSHYAP-------R 233 EK V ILRPG + LK + +E V E T P+SPGM HYAP + Sbjct: 188 GEKAV-ILRPGAISYFALKEVLGDIEYSKSVVEGLTGTVPRSPGMKYKHYAPDAKLIIVK 246 Query: 234 SQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKL--------KEAAFNLFNY 285 ++ R +N + + F + + + N KL KE NLF+ Sbjct: 247 GRIDKRIDKINEMKKKLEFKGYNVGILCFYETAHNFDSQYKLILGSMFDAKECGRNLFSI 306 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ + G I +A+ NRL +AAA Sbjct: 307 LRKFNQLGVDYILCEWGEFDLEFLALENRLYKAAA 341 >gi|58337082|ref|YP_193667.1| Sua5 family translation factor [Lactobacillus acidophilus NCFM] gi|227903650|ref|ZP_04021455.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus acidophilus ATCC 4796] gi|58254399|gb|AAV42636.1| putative translation factor SUA5 family [Lactobacillus acidophilus NCFM] gi|227868537|gb|EEJ75958.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus acidophilus ATCC 4796] Length = 334 Score = 145 bits (367), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 108/334 (32%), Positives = 161/334 (48%), Gaps = 30/334 (8%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I + L A E L G +A PTETVYGL + ++R +Y K RP+ NPLI VS Sbjct: 6 IFKKDQLDDAVELLAKGELVAFPTETVYGLGAIATKEDSVRGVYAAKGRPSDNPLIVTVS 65 Query: 66 DISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123 D M++++A P + L K FWPGPLT++L + + T LKT FR P Sbjct: 66 DEKMMERYAKEVPERAKKLIKHFWPGPLTILL-FVKPNTLPDAVTGGLKTVAFRCPDDSL 124 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 T LI G+P+ PSAN S + S T +H+ + +I IIDGG +++GLESTI+++ Sbjct: 125 THDLIAKLGYPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDGGPTRVGLESTIIDL 183 Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQV---- 236 E + +LRPG + E L + ++ V + P++PGM HYAP V Sbjct: 184 SVETPI-VLRPGEITPEELSEVLGEKVLINTGKVSDKDVPKAPGMKYRHYAPSEPVIVVD 242 Query: 237 ---RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGK------LKEAAFNLFNYMK 287 I+ N + + +E+ + +++L K L +A NLF ++ Sbjct: 243 DPADFSKINFNEKTG--------VAALESVLANIDLPDENKFNLGNDLVDADHNLFGSLR 294 Query: 288 IADD-SGASSIAFSSIPNHGLGIAINNRLERAAA 320 DD +I +A NRL +AA Sbjct: 295 YFDDKDNVETIYVQGFDEGEESLAYMNRLNKAAG 328 >gi|203284630|ref|YP_002222370.1| hypothetical protein BDU_738 [Borrelia duttonii Ly] gi|201084073|gb|ACH93664.1| uncharacterized conserved protein [Borrelia duttonii Ly] Length = 334 Score = 145 bits (367), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 107/333 (32%), Positives = 170/333 (51%), Gaps = 27/333 (8%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 + + + KA +F+++G + PTETVYG+ ++ + AIR L+ +KKRP NPLI HV Sbjct: 4 EVIKESEIEKAVKFINSGELVVFPTETVYGIGANAYDENAIRMLFIVKKRPITNPLIVHV 63 Query: 65 SDISMVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 I +K+ P S + L K F PGP+T +L + I L L++ R+P Sbjct: 64 ESIEKIKELVEYIPDSAMILMKKFTPGPITFILK--NAGKISKLINGGLESIAVRIPSDP 121 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG-----GISKIGLE 177 KLI+ P+A PSAN S + S TN + + KE+ ++ G +S+IG+E Sbjct: 122 IALKLIKMSKVPIAAPSANLSKRPSATNFEMAI-----KELNGLVKGIIQKNEVSQIGIE 176 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAIS--VELEYCVDETSTPQSPGMLKSHYAPRSQ 235 ST+++ + V ILRPG + E ++R ++ +EY + + QSPG L HY PR Sbjct: 177 STVISFDAKSNVSILRPGSITKEMIERELNGKFNVEYSLGKKILQQSPGNLLEHYRPRIP 236 Query: 236 VRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKT---------GKLKEAAFNLFNYM 286 V L N R+ + R + I ++N I S +K L+E A N++ Sbjct: 237 VYLFRQKDNIRKYISR-QDTKILIMKNTIKSYWFNKLWNTNHICVFNTLEEYAKNIYKVF 295 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 + + I + N+ LG +INNRL++A+ Sbjct: 296 -VESERTHKQILAEFVDNNQLGYSINNRLKKAS 327 >gi|315038004|ref|YP_004031572.1| Sua5 family translation factor [Lactobacillus amylovorus GRL 1112] gi|325956457|ref|YP_004291869.1| Sua5 family translation factor [Lactobacillus acidophilus 30SC] gi|312276137|gb|ADQ58777.1| Sua5 family translation factor [Lactobacillus amylovorus GRL 1112] gi|325333022|gb|ADZ06930.1| Sua5 family translation factor [Lactobacillus acidophilus 30SC] gi|327183284|gb|AEA31731.1| Sua5 family translation factor [Lactobacillus amylovorus GRL 1118] Length = 333 Score = 145 bits (367), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 108/334 (32%), Positives = 164/334 (49%), Gaps = 30/334 (8%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I + L +A + L G +A PTETVYGL + N +++ +Y K RP+ NPLI +S Sbjct: 5 IFKKDQLDEAVKLLAKGELVAFPTETVYGLGAIATNEKSVKGVYAAKGRPSDNPLIVTIS 64 Query: 66 DISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 D M++++A P + L K FWPGPLTL+L + + T LKT FR P Sbjct: 65 DEKMMERYAKEVPERAKTLIKHFWPGPLTLLL-FVKPGTLPDAVTGGLKTVAFRCPDDQL 123 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 T LI G+P+ PSAN S + S T +H+ + +I IIDGG +++GLESTI+++ Sbjct: 124 THDLIAKLGYPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDGGPTRVGLESTIIDL 182 Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQV---- 236 + + +LRPG + E L + + ++ V + P++PGM HYAP V Sbjct: 183 SVKTPI-VLRPGEITPEELSKVLGEKVLINTGKVSDKDVPKAPGMKYRHYAPSEPVIVVD 241 Query: 237 ---RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGK------LKEAAFNLFNYMK 287 I N + + G++ + ++LS K L +A NLF ++ Sbjct: 242 NPADFAKIDFNEKTGVAALGSI--------LAKIDLSDDNKFDLGENLVDADHNLFGALR 293 Query: 288 IADDSGASSIAFSSIPNHG-LGIAINNRLERAAA 320 DD + N G +A NRL +AA Sbjct: 294 YFDDKDNIETIYVQGFNEGEESLAYMNRLNKAAG 327 >gi|168185917|ref|ZP_02620552.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum C str. Eklund] gi|169296125|gb|EDS78258.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum C str. Eklund] Length = 350 Score = 145 bits (367), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 103/337 (30%), Positives = 170/337 (50%), Gaps = 31/337 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + ++ E + G + PTETVYGL ++ + A+++++ K RP NPLI H++D Sbjct: 14 DEKVMEESGEIIRNGGLVVFPTETVYGLGANALDSEAVKKIFVAKGRPQDNPLIVHIADF 73 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KK 126 +M S+ P++ + FWPGPLT+++ + + +++A L + R+P ++ Sbjct: 74 NMNDLVNSIPPIAEKIINKFWPGPLTVIMK--KSPKVPDVTSAGLDSIGIRMPSNLVARE 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LI+ G P+A PSAN SG+ S TN++ + + ++ II G +GLESTIV+ E Sbjct: 132 LIKKAGVPIAAPSANISGKPSPTNIERCI-EDLDGKVESIIGGEKCDVGLESTIVDCTVE 190 Query: 187 KKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241 ILRPGG+ +E LK I + D+ P++PGM HYAP++ V++ A Sbjct: 191 PPC-ILRPGGITLEMLKEVHPDIYIDPAIMKKADKDFKPKAPGMKYRHYAPKAPVKIIAG 249 Query: 242 HVNPREALIRFGNVPIKNI--ENAIISL----------------NLSKTGKLKEAAFNLF 283 ++ A I N ++N ++ I+ + +L L A NLF Sbjct: 250 NLEKSIAKI---NEMVQNYIDDDKIVGIMSTDEHVNSYSHATVKSLGSRKDLHSIAHNLF 306 Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + D I + +GIAI NRL++AA Sbjct: 307 KVLSEFDSEKVDIILSEAFEEEEIGIAIMNRLKKAAG 343 >gi|163789458|ref|ZP_02183897.1| Sua5/YciO/YrdC/YwlC family protein [Carnobacterium sp. AT7] gi|159875312|gb|EDP69377.1| Sua5/YciO/YrdC/YwlC family protein [Carnobacterium sp. AT7] Length = 341 Score = 145 bits (367), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 104/325 (32%), Positives = 164/325 (50%), Gaps = 21/325 (6%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI-SMVKK 72 KA L G I+ PTETVYGL D+ N A++++Y K RP+ NPLI HVS I + + Sbjct: 15 KAALKLQQGELISFPTETVYGLGADATNEAAVKKVYSAKGRPSDNPLIVHVSAIEEVEQY 74 Query: 73 HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETY 131 V ++ L + FWPGPLTL+ + P +TA L + R+P T +LI Sbjct: 75 VVEVSEVASKLMETFWPGPLTLIFKVKEQA-FAPTATAGLDSVAMRMPDNALTLQLIRET 133 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 G PL PSAN SG+ S T H+ + +I ++D G + +GLEST+++V + I Sbjct: 134 GKPLVGPSANTSGKPSPTTAGHVF-HDLKGKIAGVLDDGETGVGLESTVLDVTDPVRPTI 192 Query: 192 LRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQVRL---------RA 240 LRPG E L++ I + + P++PGM HY+P V + +A Sbjct: 193 LRPGATTKEALEQIIGTVYVDRHLISSDEVPKAPGMKYKHYSPNEAVVIVDGNHDVWQKA 252 Query: 241 IHVNPREALIRFGNVPIKNI-----ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 I ++ + G + + I +N + +L + + +AA L++ ++ + + A+ Sbjct: 253 IETYQKQGE-KVGLLAEQAIVDHFQKNVSATYSLGENKNVNDAARLLYSGLRYFEKTTAT 311 Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320 I + GLG A NRL++AA Sbjct: 312 VILAQAYAEKGLGEAYMNRLKKAAG 336 >gi|169335782|ref|ZP_02862975.1| hypothetical protein ANASTE_02207 [Anaerofustis stercorihominis DSM 17244] gi|169258520|gb|EDS72486.1| hypothetical protein ANASTE_02207 [Anaerofustis stercorihominis DSM 17244] Length = 340 Score = 145 bits (366), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 104/326 (31%), Positives = 181/326 (55%), Gaps = 32/326 (9%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A ++AG + PTETVYGL ++ + A++++++ K RP+ NPLI H+SD+ M+ Sbjct: 21 AASVINAGGTVVFPTETVYGLGANAYDDEAVKKIFKAKNRPSDNPLIVHISDLDMIDDLV 80 Query: 75 S-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTAN-LKTACFRVPC-----GFTKKL 127 + + + L F+PGPLTL++ S P S +N L T R+P GF Sbjct: 81 TCISDDARKLMSKFFPGPLTLIMKKSSKV---PNSVSNGLDTVGIRMPSDKEANGF---- 133 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I+ G P+A PSAN S + SITN K+++ + ++ +I+ S IGLEST+++V + Sbjct: 134 IKACGVPIAAPSANISKRPSITNKKYLV-EELSGKVDMILCSKNSSIGLESTVLDVSSD- 191 Query: 188 KVRILRPGGLEIETLKRAISVELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246 KV++LRPG + E +++ I ++ Y ++ P+SPGM HY P+++V + ++ N + Sbjct: 192 KVKLLRPGKISAEDIEKVIGKKVYGYNGEDALLPKSPGMKYEHYKPKTKVVV--LNGNDK 249 Query: 247 EALIRF---------GNVPIKNIENAIIS--LNLSKTGK-LKEAAFNLFNYMKIADDSGA 294 ++I + G + + NI I + + L GK + +A+ NL+ ++ D Sbjct: 250 -SIINYLNDIKADDAGFIGLDNITQKIGNKKIKLKSFGKDISDASRNLYYLLREMDSENL 308 Query: 295 SSIAFSSIPNHGLGIAINNRLERAAA 320 I ++ + G+G+A NRL +AA+ Sbjct: 309 DIIYVQAMDSRGIGLAYMNRLLKAAS 334 >gi|153812520|ref|ZP_01965188.1| hypothetical protein RUMOBE_02919 [Ruminococcus obeum ATCC 29174] gi|149831445|gb|EDM86533.1| hypothetical protein RUMOBE_02919 [Ruminococcus obeum ATCC 29174] Length = 354 Score = 145 bits (366), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 90/238 (37%), Positives = 138/238 (57%), Gaps = 12/238 (5%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D +A++KA + L AG +A PTETVYGL ++ +P A ++Y K RP+ NPLI H++++ Sbjct: 14 DMDAIKKAGDILKAGGLVAFPTETVYGLGGNALDPQASMKIYAAKGRPSDNPLIVHIAEL 73 Query: 68 SMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCG-FT 124 ++K + P LA+ +WPGPLT++ L DI P +T L + R P Sbjct: 74 EQLEKITTEIPEGAKILAEKYWPGPLTMI---LPKADIVPRETTGGLDSVAVRFPSDRIA 130 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 ++LI+ G +A PSAN SG+ S T +H+ + I +IIDGG IGLESTIV+ Sbjct: 131 QELIKAGGGFVAAPSANTSGRPSPTMAEHV-EEDLGDAIDMIIDGGQVGIGLESTIVDF- 188 Query: 185 CEKKVRILRPGGLEIETLKRAIS-VELE---YCVDETSTPQSPGMLKSHYAPRSQVRL 238 EK +LRPG + +E L+ + V ++ D + P++PGM HYAP++ + + Sbjct: 189 TEKVPVVLRPGYISLEMLQETLGDVRMDKGLLITDSSVHPKAPGMKYRHYAPKADLSI 246 >gi|134080269|emb|CAK97172.1| unnamed protein product [Aspergillus niger] Length = 397 Score = 145 bits (366), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 109/360 (30%), Positives = 178/360 (49%), Gaps = 53/360 (14%) Query: 8 DSNALRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 ++ A+ A + L + +P+A PTETVYGL D+ A++ +Y+ K+RP+ NPLI HV Sbjct: 39 EAAAIEDAAQLLRTSDIPVAFPTETVYGLGADATRSDAVQGIYKAKQRPSDNPLIIHVDS 98 Query: 67 ISMVKK----------------HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA 110 + M+++ ++ P+ + FWPGPLT++L S + + P T+ Sbjct: 99 LGMLERLLNPTQESPSRRTSTAKNAIPPIYDSVISRFWPGPLTILLPNPSGSPLAPEVTS 158 Query: 111 NLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169 L T R+P + LI PLA PSAN S + S T +H+ + I LI+DG Sbjct: 159 KLTTFGVRMPSSPLARLLIHVTDRPLAAPSANASTKPSPTAAEHVF-HDLEGRIELILDG 217 Query: 170 GISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAI---SVELEY---CVDETSTPQSP 223 G +G+EST+V+ + ILRPGG+ IE L+ +V++ Y +D P++P Sbjct: 218 GPCGVGVESTVVDGLSDPPA-ILRPGGIGIEELRTCAGWENVQVGYHDGTLDVKEIPRAP 276 Query: 224 GMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNL--------SKTGKL 275 GM HY+P+++V L + EA+ R K++E++ I ++ K G Sbjct: 277 GMKYRHYSPKARVVLFEAGSD-EEAVTRHIR---KDLEDSAIGAHMIGVVRTQHWKRGTA 332 Query: 276 KEAAFN-------------LFNYMKIADDSGASSIAFSSIPNH--GLGIAINNRLERAAA 320 + F+ LF+ ++ D+ I +P+H L A+ NRL +AA Sbjct: 333 TKETFDCHLGTDVKSIAQGLFSALRAMDEMEVDVIYVEGVPDHQGDLAAAVMNRLRKAAG 392 >gi|153816408|ref|ZP_01969076.1| hypothetical protein RUMTOR_02661 [Ruminococcus torques ATCC 27756] gi|317502463|ref|ZP_07960626.1| hypothetical protein HMPREF1026_02571 [Lachnospiraceae bacterium 8_1_57FAA] gi|331089289|ref|ZP_08338191.1| hypothetical protein HMPREF1025_01774 [Lachnospiraceae bacterium 3_1_46FAA] gi|145846243|gb|EDK23161.1| hypothetical protein RUMTOR_02661 [Ruminococcus torques ATCC 27756] gi|316896148|gb|EFV18256.1| hypothetical protein HMPREF1026_02571 [Lachnospiraceae bacterium 8_1_57FAA] gi|330405841|gb|EGG85370.1| hypothetical protein HMPREF1025_01774 [Lachnospiraceae bacterium 3_1_46FAA] Length = 507 Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 112/359 (31%), Positives = 172/359 (47%), Gaps = 55/359 (15%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A L G +A PTETVYGL D+ A + Y K RP+ NPLI H+++ ++ Sbjct: 18 IEEAGMILKNGGLVAFPTETVYGLGADALKEEAAMKTYAAKGRPSDNPLIVHIAEYEDLR 77 Query: 72 K-----HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCG-FT 124 K A D L+ H FWPGPLT++ + +++ P +T L T R+P Sbjct: 78 KIAVNIPAETDALAAH----FWPGPLTMIFE---KSEVVPYGTTGGLDTVAVRMPTDEVA 130 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + LI G ++ PSAN SG+ S T +H+ + + +I +I+DGG +IGLESTI+++ Sbjct: 131 RALIRAAGGFVSAPSANTSGRPSPTLAEHV-AEDLGGKIDMILDGGAVEIGLESTILDMT 189 Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVDET-------STPQSPGMLKSHYAPRSQVR 237 + ILRPG + E + I + VDET P++PGM HYAP++ + Sbjct: 190 VTPPM-ILRPGAITAEMFEEVIG---KVDVDETLLVAESEKAPKAPGMKYRHYAPKA--K 243 Query: 238 LRAIHVNPREALIRFGNVPIKNIENA--------IISLNLSKTGKLKE---------AAF 280 L + + RE + + K + +L K G +K A Sbjct: 244 LMIVEGDLREEIFAIRQLAYKAYKEGRKVGVIATTETLPFYKYGVVKNIGTRENEKTIAR 303 Query: 281 NLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA----------APRNQSQRIV 329 NL+ ++ D+ I S G+G AI NRLE+AA A R + +RI+ Sbjct: 304 NLYRVLREFDEEDVEEIYSESFAAQGIGKAIMNRLEKAAGHTRLSAAEIAKRQKYRRII 362 >gi|254566675|ref|XP_002490448.1| Protein required for respiratory growth [Pichia pastoris GS115] gi|238030244|emb|CAY68167.1| Protein required for respiratory growth [Pichia pastoris GS115] Length = 377 Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 105/320 (32%), Positives = 160/320 (50%), Gaps = 27/320 (8%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-----ASVDPL 79 I PTETVYGL S N +++ +Y K RP NPLI HV+ +S + + + + Sbjct: 51 IGFPTETVYGLGASSLNDESVKSIYIAKNRPLDNPLITHVASLSQLHRKILPPSTKIPDI 110 Query: 80 SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIP 138 L L K FWPGPLT++L + T + L+TA T R+P + LI PLA P Sbjct: 111 YLPLIKKFWPGPLTILLPVEDDTTLSRLTTAGQDTFAVRIPNHPVARALIAISDEPLAAP 170 Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLE 198 SAN S + S T +H+ + IPLIIDGG S +GLES++VN + +LRPGG+ Sbjct: 171 SANASTRPSPTLAEHVY-HDLQGRIPLIIDGGPSNVGLESSVVNGLTNPPM-LLRPGGIS 228 Query: 199 IETLKRAIS-----VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP----REAL 249 ++ ++ V + + + ++PGM HY+P ++V L N +EAL Sbjct: 229 LKQIQEVGHGWEDIVTAKKTANASEPVRTPGMKYKHYSPTAKVILFVKCGNGVKAVQEAL 288 Query: 250 IRFGNVPIKNIENAIISLNLSKTGK----------LKEAAFNLFNYMKIADDSGASSIAF 299 R+ N I + + + + + + E A NLF ++ D + I Sbjct: 289 SRYPNSKIALLTGSEFEIPETLQAQFAIVDHLGSSITEMAHNLFAKLRNLDKNDMDYIFI 348 Query: 300 SSIPNHGLGIAINNRLERAA 319 +P+ G G+A+ NRL +AA Sbjct: 349 EGVPDAGEGLALMNRLSKAA 368 >gi|303230732|ref|ZP_07317479.1| Sua5/YciO/YrdC/YwlC family protein [Veillonella atypica ACS-049-V-Sch6] gi|302514492|gb|EFL56487.1| Sua5/YciO/YrdC/YwlC family protein [Veillonella atypica ACS-049-V-Sch6] Length = 344 Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 110/342 (32%), Positives = 169/342 (49%), Gaps = 33/342 (9%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 I +T N L+ L G +AIPTETVYGL + + A+ ++Y K RP+ NPLI Sbjct: 6 ITELTRDN-LQLVAHALRHGDVVAIPTETVYGLGANGLDADAMDKIYAAKGRPSDNPLIL 64 Query: 63 HVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVP 120 HV + +K P + L + FWPGPLT+ L +D+ P +T L R P Sbjct: 65 HVPNAESIKPLVKEIPETAKALIEAFWPGPLTIT---LPKSDLVPDRATGGLARVALRCP 121 Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + ++E G P+A PSAN SG+ S T + + + IP I+D GI IG+EST Sbjct: 122 DHAVCRNILELAGVPIAAPSANISGRPSPTTAQSVY-DDMNGRIPYIVDAGICTIGVEST 180 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAI-SVELE-YCVDETSTPQSPGMLKSHYAPRSQVR 237 +V V+ + V ILRPGG+ E L++ + +V + + + P++PGM HYAP + Sbjct: 181 VVEVR-DDGVTILRPGGITKEMLEQVVDNVSYDPFLSSQNEAPKAPGMKYKHYAPDAP-- 237 Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNLSK-------------------TGKLKEA 278 +RA NP++ F NV I+ E + +S+ +G Sbjct: 238 MRAFIGNPKDVAETFSNV-IREQETKRGAFLISQETYELLKDSVHGEFHVYGHSGDAVAL 296 Query: 279 AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 A + + + ++ I + N GLG+A+ NR+E+A A Sbjct: 297 AHDFYKTLHHFNECDVDYILAEGVENTGLGVAVMNRMEKACA 338 >gi|37678973|ref|NP_933582.1| putative translation factor [Vibrio vulnificus YJ016] gi|37197715|dbj|BAC93553.1| putative translation factor [Vibrio vulnificus YJ016] Length = 328 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 106/327 (32%), Positives = 168/327 (51%), Gaps = 28/327 (8%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 +S + + +A E L +G +AIPTETVYGLA D+ NP A+++++ K RPA +PLI H Sbjct: 14 LSALEQKDIDQAKEILASGELVAIPTETVYGLAADATNPDAVKKIFAAKGRPADHPLIVH 73 Query: 64 VSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC- 121 + + + A P + LA+ +WPGP+TL+L + P+ T L+T R+P Sbjct: 74 IGRVEQLTDWAIDIPEEAYTLAQAYWPGPVTLLLK--KAPHVTPVVTGGLETIGIRMPAH 131 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 L+++ G +A PSAN ++S T+ KH++ +S+ +I ++DGG GLESTIV Sbjct: 132 DVFATLLQSSGMAVAAPSANPYKKLSPTSAKHVM-NSLGGKIAAVLDGGDCAHGLESTIV 190 Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQS-----PGMLKSHYAPRSQV 236 ++ EK RILR G + L + +E S+P S PG + SHY P ++V Sbjct: 191 DL-TEKPFRILRTGPVTAAQLSATLG-------EEVSSPVSHNVAVPGNVTSHYQPNTRV 242 Query: 237 RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGK-----LKEAAFNLFNYMKIADD 291 RL V + L G+ I + + + G+ + E + +L+ + AD Sbjct: 243 RL----VQASD-LALVGDKKIAYLHYTPFTAQENVEGRQMPSSVAEYSHDLYRTLDEADK 297 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERA 318 G I P A+++RL RA Sbjct: 298 WGCEEIWVERPPVTESWFAVHDRLNRA 324 >gi|317471145|ref|ZP_07930516.1| Sua5/YciO/YrdC/YwlC family protein [Anaerostipes sp. 3_2_56FAA] gi|316901360|gb|EFV23303.1| Sua5/YciO/YrdC/YwlC family protein [Anaerostipes sp. 3_2_56FAA] Length = 351 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 91/237 (38%), Positives = 133/237 (56%), Gaps = 11/237 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 + A+R+A L G +A PTETVYGL A R+YE K RP+ NPLI H+ + Sbjct: 16 NKEAIREAAGLLREGKLVAFPTETVYGLGGSGWMEEAASRIYEAKGRPSDNPLILHIGSM 75 Query: 68 SMVKKHASVDPLSLHLA-KLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FT 124 M+ + S P A FWPGPLT++ L +D P T L + R+P Sbjct: 76 EMIDEITSCVPGPAKKAMDAFWPGPLTVI---LPKSDKVPYRVTGGLDSVAVRMPSHPAA 132 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 L+ G P+A PSAN SG+ S T +H++ + +IP+++DGG ++G+ESTIV+ Sbjct: 133 LALLREAGVPVAAPSANTSGRPSPTKAEHVV-EDLDGKIPMVLDGGKVEVGVESTIVDFT 191 Query: 185 CEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRL 238 E V ILRPG + + L++A+S E+ V E + P++PGM HYAP++Q+ L Sbjct: 192 GEVPV-ILRPGKITKDELEKALSTEVLMSTLSVKEDTVPRAPGMKYKHYAPKAQLVL 247 >gi|255993957|ref|ZP_05427092.1| Sua5/YciO/YrdC/YwlC family protein [Eubacterium saphenum ATCC 49989] gi|255993625|gb|EEU03714.1| Sua5/YciO/YrdC/YwlC family protein [Eubacterium saphenum ATCC 49989] Length = 339 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 91/242 (37%), Positives = 133/242 (54%), Gaps = 18/242 (7%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + KA + G +A PTETVYGL ++ +P AI ++Y+ K RP+ NPLI H+SDI Sbjct: 9 DKEGMEKAANIIRTGGTVAFPTETVYGLGANALDPDAIEKIYKAKGRPSDNPLIVHISDI 68 Query: 68 SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125 S ++ AS VD L +A FWPGPLTLV + DI T L T R+P + Sbjct: 69 SELQGVASDVDKHILAIANEFWPGPLTLVCK--KSADIPDQVTGGLDTVAVRMPSSSIAR 126 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 + I + G P+A PSAN+SG+ S T+ H++ + +I +I G S IG+EST+++V Sbjct: 127 EFIRSAGVPIAAPSANKSGKPSPTSTSHVI-DDLNGKIDAVIMGDDSDIGIESTVISVTG 185 Query: 186 EKKVRILRP---GGLEIETLKRAISVELEYCVDETST---------PQSPGMLKSHYAPR 233 KV +LRP G +EI +L D +++ P+SPG+ HY+P Sbjct: 186 -GKVNVLRPGVIGEVEIRGCLEKSGYKLSSGFDGSASDERKSMKDVPKSPGVKYKHYSPN 244 Query: 234 SQ 235 + Sbjct: 245 CE 246 >gi|327401143|ref|YP_004341982.1| Sua5/YciO/YrdC/YwlC family protein [Archaeoglobus veneficus SNP6] gi|327316651|gb|AEA47267.1| Sua5/YciO/YrdC/YwlC family protein [Archaeoglobus veneficus SNP6] Length = 317 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 111/320 (34%), Positives = 170/320 (53%), Gaps = 37/320 (11%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 +A E + G +A PTETVYGL D+ N A+RR++E K+RP NPLI HVS + V + Sbjct: 18 RAAEIIKKGGLVAFPTETVYGLGGDALNENAVRRIFEAKERPPRNPLIVHVSSVEQVYRI 77 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVP---CGFTKKLIE 129 A V+ ++ L F+PGPL LV L D+ P ++TA +K R+P T LIE Sbjct: 78 AEVNEVAEKLMGEFFPGPLALV---LKKKDVVPDITTAGMKKVAVRMPDHKVALT--LIE 132 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+A PSAN SG+ S T +H++ + I I+D G KIG+EST+++V K Sbjct: 133 LSETPIAAPSANISGRPSPTKAEHVI-EDLAGRIDAILDAGEVKIGIESTVLDVTS-KPA 190 Query: 190 RILRPGGLEIETL-KRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248 +ILR G + E L +R I VE+ +D + P HY +++ ++V E Sbjct: 191 KILRLGAITPEMLVERGIEVEV---ID--TRPF------RHYQTKAK-----LYVVNAEN 234 Query: 249 LIRF-GNVPIKNIENAIISLN-------LSKTGK-LKEAAFNLFNYMKIADDSGASSIAF 299 L F G++ K ++ + + + + GK +++ A NLF+ ++ D SG I Sbjct: 235 LAEFVGSLREKGVKVGVARITAECDADRIVELGKSIEDVAKNLFSALRELDRSGVDIIVV 294 Query: 300 SSIPNHGLGIAINNRLERAA 319 ++ GLG I ++LE A Sbjct: 295 EAVERKGLGKVIMSKLEEAG 314 >gi|313631919|gb|EFR99062.1| protein Sua5 [Listeria seeligeri FSL N1-067] Length = 303 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 107/305 (35%), Positives = 167/305 (54%), Gaps = 19/305 (6%) Query: 38 DSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVL 96 D+ N AI+++YE K RP+ NPLI H++ + AS ++ L + FWPGPLT++L Sbjct: 2 DATNQAAIQKIYEAKGRPSDNPLIVHIASRDQMDAFVASYPQKAIKLMEKFWPGPLTVIL 61 Query: 97 DLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHIL 155 L + +S A L T R+P + LI+ G P+A PSANRSG+ S T+ H++ Sbjct: 62 PLKKDSLASNVS-AGLSTVGVRMPDHPVSLALIKEAGIPVAAPSANRSGKPSPTSASHVI 120 Query: 156 SSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAI-SVEL-EYC 213 + ++ IIDGG + +GLEST+++ E V ILRPGG+ E +++ I SVEL Sbjct: 121 -EDLDDKVAGIIDGGATGVGLESTVIDCSTEIPV-ILRPGGITKEQIEQVIGSVELANND 178 Query: 214 VDETSTPQSPGMLKSHYAPRSQVRL----RAI---HVNPREAL-IRFGNVPIKNIENAII 265 ET P++PGM +HYAP++ V L +A +N EA + G + K + + + Sbjct: 179 TKETEKPKAPGMKYTHYAPKAPVYLVEGSKAFWQKEINKVEAAHKKLGILATKELLDGLT 238 Query: 266 SLNLSKTG----KLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 + +++T ++E A L+ ++ D + I P LG A+ NRLE+AA Sbjct: 239 TNAVTQTTGSIESMEEIANQLYKGLRAFDHAEVDIIFAEVYPETELGAAVMNRLEKAAGN 298 Query: 322 RNQSQ 326 R S+ Sbjct: 299 RRISE 303 >gi|295109526|emb|CBL23479.1| Sua5/YciO/YrdC/YwlC family protein [Ruminococcus obeum A2-162] Length = 354 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 106/345 (30%), Positives = 175/345 (50%), Gaps = 31/345 (8%) Query: 2 QIMSIT----DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 QI+++T D +A+++A + L AG +A PTETVYGL ++ +P A ++Y K RP+ Sbjct: 4 QIVAMTSENLDMDAIKRAGDILKAGGLVAFPTETVYGLGGNALDPQASMKIYAAKGRPSD 63 Query: 58 NPLICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTA 115 NPLI H+++ + + + P LA+ +WPGPLT++ L DI P +T L + Sbjct: 64 NPLIVHIAEADQLAEITTEIPQGAKILAEKYWPGPLTMI---LPKADIVPKETTGGLDSV 120 Query: 116 CFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174 R P ++LI+ G +A PSAN SG+ S T +H+ + I +IIDGG I Sbjct: 121 AVRFPSDRIAQELIKAAGGFVAAPSANTSGRPSPTMAEHV-EEDLGDAIDMIIDGGQVGI 179 Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAI-SVELE---YCVDETSTPQSPGMLKSHY 230 GLESTIV+ + V +LRPG + ++ LK + V ++ D + P++PGM HY Sbjct: 180 GLESTIVDFTEDVPV-VLRPGYISLQMLKETLGDVRMDRGLLITDNSVHPKAPGMKYRHY 238 Query: 231 APRSQVR------------LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEA 278 AP++ + + + + ++ G + ++ ++ G +E Sbjct: 239 APKADLSIVEGTEAQVIDCINRLSAEAEKKGLKVGVIATNETKDRYAHADVFSIGSREEE 298 Query: 279 ---AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 A +L+ ++ DD I + +G AI NRL +AA Sbjct: 299 ETIAHHLYEVLRSFDDDRVDLIYSEAFYTPRMGQAIMNRLLKAAG 343 >gi|304438783|ref|ZP_07398711.1| Sua5/YciO/YrdC/YwlC family protein [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372785|gb|EFM26363.1| Sua5/YciO/YrdC/YwlC family protein [Peptoniphilus duerdenii ATCC BAA-1640] Length = 354 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 103/332 (31%), Positives = 160/332 (48%), Gaps = 30/332 (9%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++ L G + PTETVYGL + N A++ +Y K RP+ NPLI H++D+ M+ Sbjct: 17 IKEVASALRDGKLVVFPTETVYGLGGNGLNEDALKNIYVAKGRPSDNPLILHIADLDMLD 76 Query: 72 KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 P L FWPGPLTL+ + S + +T L T R+P +++ Sbjct: 77 TLVRDIPKDAKLLIDKFWPGPLTLIFNRKSI--VPDRATGGLDTVAIRMPSDKVAHAILK 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+A PSAN SG+ S T+ H++ + + I+D S +G+EST+V++ + Sbjct: 135 EAKVPVAAPSANLSGKPSPTSTAHVI-EDLDGRVDYIVDSTRSFVGIESTVVDMTVNPPM 193 Query: 190 RILRPGGLEIETLKRAISVELEYCVDET-------STPQSPGMLKSHYAPRSQVRLRAIH 242 ILRPG + E LK I + C D T S P+SPG HYAP + Sbjct: 194 -ILRPGYITYEDLKSVIP---DVCYDNTTIDKDDKSVPKSPGQKYRHYAPSANCYTYVGD 249 Query: 243 VN--------------PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKI 288 VN ++ + + +K IE ++ L+L L +A+ NLF +++ Sbjct: 250 VNLVRDKIKEEINKNKDKKICVIATDRVLKEIEEDVLKLSLGSGEDLLDASHNLFYNLRV 309 Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 ADD+ I GLG+ I NRL +A++ Sbjct: 310 ADDNDVDIIFCEGFEQVGLGVGIMNRLTKASS 341 >gi|291548235|emb|CBL21343.1| Sua5/YciO/YrdC/YwlC family protein [Ruminococcus sp. SR1/5] Length = 364 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 113/339 (33%), Positives = 170/339 (50%), Gaps = 35/339 (10%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D A+ + E L G +A PTETVYGL ++ +P A ++Y K RP+ NPLI H++DI Sbjct: 18 DRKAIARGGEILKNGGLVAFPTETVYGLGGNALDPKASMKIYAAKGRPSDNPLIVHIADI 77 Query: 68 SMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCG-FT 124 + K + P LA+ +WPGPLT++ L DI P +T L + R P Sbjct: 78 RDLDKIVTEVPEKARILAEKYWPGPLTMI---LPKADIVPKETTGGLDSVAVRFPSDPIA 134 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 ++LI G +A PSAN SG+ S T H+ + + + I +IIDGG IGLESTIV+ Sbjct: 135 QELILAAGGYVAAPSANTSGRPSPTTAGHV-AEDLGEAIDMIIDGGQVNIGLESTIVDFT 193 Query: 185 CEKKVRILRPGGLEIETLKRAIS-VELEYCV---DETSTPQSPGMLKSHYAPRSQVRLRA 240 + V +LRPG + +E L+ + V ++ + D P++PGM HYAP++ + A Sbjct: 194 EDIPV-VLRPGYISLEMLRETLGDVRMDKGLIKPDSKVHPKAPGMKYRHYAPKADL---A 249 Query: 241 IHVNPREALI-----RFGNVPIKNIENAIISLNLSKTGKLKEA--------------AFN 281 I E +I R G K + II+ + +K G+ A + Sbjct: 250 IVEGSTEGVIAEIEKRAGEAEEKGLTVGIIATDETK-GRYSHGIVKSIGSREQEETIAHH 308 Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 L+ ++ D S+I + +G AI NRL +AA Sbjct: 309 LYEVLRDFDSCNVSAIYSEAFFTPRMGQAIMNRLLKAAG 347 >gi|148658404|ref|YP_001278609.1| Sua5/YciO/YrdC/YwlC family protein [Roseiflexus sp. RS-1] gi|148570514|gb|ABQ92659.1| translation factor SUA5 [Roseiflexus sp. RS-1] Length = 356 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 111/346 (32%), Positives = 168/346 (48%), Gaps = 38/346 (10%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 ++ + + +A + AG +A PTETVYGL + + A+ R++ K+RPA +P+I H+ Sbjct: 15 AVPEPQIIAEAAAVIRAGGLVAFPTETVYGLGASALDEQAVARIFHAKERPATDPIIAHI 74 Query: 65 SDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK----TACFRV 119 +D+ + A V P + LA+ FWPGPLTLV+ P+ ANL T R+ Sbjct: 75 ADLCQLDVLARDVPPAAHALARRFWPGPLTLVVLR------RPIVPANLSAGRATVAVRM 128 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P LI G P+A PSANR + S T H+L + I L++DGG + IG+ES Sbjct: 129 PAHPVALALIAASGVPIAAPSANRFSRPSPTTAAHVL-DDLNGRIDLVLDGGATHIGVES 187 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV-----DETSTPQSPGMLKSHYAPR 233 ++V++ + V +LRPGG+ I L+ + EL + DE + P +PGML HYAP Sbjct: 188 SVVDLTVDPPV-LLRPGGVTITALREVLP-ELTFAPRYLAGDEEALP-APGMLLRHYAPN 244 Query: 234 SQV------------RLRAIHVNPREALIRFGNVPIKNIENAIISL-----NLSKTGKLK 276 + + R+RA A +R G + A+ L L + Sbjct: 245 ATLTVVAGDHAAALERIRAEAQAAINAGLRVGVLAFDEDAPALADLPVRIVQLGPAANPE 304 Query: 277 EAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 A LF ++ + +G I GL + I +RL RAA R Sbjct: 305 VVAQRLFAALRAIEQTGVDLILARDPGQEGLSLTIRDRLVRAAEGR 350 >gi|19075544|ref|NP_588044.1| SUA5/yciO/yrdC family protein Sua5 (predicted) [Schizosaccharomyces pombe 972h-] gi|74582918|sp|O94530|SUA5_SCHPO RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein sua5; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein sua5 gi|4164422|emb|CAA22839.1| SUA5/yciO/yrdC family protein Sua5 (predicted) [Schizosaccharomyces pombe] Length = 408 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 118/368 (32%), Positives = 177/368 (48%), Gaps = 64/368 (17%) Query: 10 NALRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +AL A L + P+A PTETVYGL D+R A+ +Y+ K RPA NPLI HV+ + Sbjct: 40 SALENAANILRNTDYPVAFPTETVYGLGADARRTEAVLSIYKAKNRPADNPLIVHVASLD 99 Query: 69 MVKK-----------------HAS---VDPLSLHLAKLFWPGPLTLVLDLLSTTD--IHP 106 +++ H S + + L L K FWPGPL+++L ++ + + P Sbjct: 100 QLRRLLLSAYPKAKSEVKNQAHDSEEIIPKVYLPLIKKFWPGPLSILLPVVDEANPPVSP 159 Query: 107 LSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPL 165 + TA KT R+P LI PLA PSAN S + S T KH+ + + +IPL Sbjct: 160 IVTAGQKTFAVRMPQHPVALALISISDSPLAAPSANASTRPSPTLAKHVY-NDLQGKIPL 218 Query: 166 IIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRA--------ISVELEYCVDET 217 I+DGG +G+EST+VN C+ V ILRPGG+ +E ++ + + V + ++ Sbjct: 219 ILDGGACGVGVESTVVNGLCDPPV-ILRPGGISLEEIQSSGGAWERTKVFVAKKSDMETD 277 Query: 218 STPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTG---- 273 PQ+PGM HY+P ++V L VN E+ +G V K + I+ K G Sbjct: 278 FIPQTPGMKYRHYSPTAKVLL---FVNYTES-DAYG-VFEKYLSEQGITKEKQKIGVLCS 332 Query: 274 -KLKEAAF--------------------NLFNYMKIADDSGASSIAFSSIPNHGLGIAIN 312 + E +F NLF ++ D G + + G+AI Sbjct: 333 KRWNEESFPSHCPFVFLHMGRDGHEITKNLFAQLRDLDLQGVDFVLVEGVSEENEGLAIM 392 Query: 313 NRLERAAA 320 NRL +AA+ Sbjct: 393 NRLGKAAS 400 >gi|328350842|emb|CCA37242.1| Uncharacterized protein ywlC [Pichia pastoris CBS 7435] Length = 436 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 105/320 (32%), Positives = 160/320 (50%), Gaps = 27/320 (8%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-----ASVDPL 79 I PTETVYGL S N +++ +Y K RP NPLI HV+ +S + + + + Sbjct: 110 IGFPTETVYGLGASSLNDESVKSIYIAKNRPLDNPLITHVASLSQLHRKILPPSTKIPDI 169 Query: 80 SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIP 138 L L K FWPGPLT++L + T + L+TA T R+P + LI PLA P Sbjct: 170 YLPLIKKFWPGPLTILLPVEDDTTLSRLTTAGQDTFAVRIPNHPVARALIAISDEPLAAP 229 Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLE 198 SAN S + S T +H+ + IPLIIDGG S +GLES++VN + +LRPGG+ Sbjct: 230 SANASTRPSPTLAEHVY-HDLQGRIPLIIDGGPSNVGLESSVVNGLTNPPM-LLRPGGIS 287 Query: 199 IETLKRAIS-----VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP----REAL 249 ++ ++ V + + + ++PGM HY+P ++V L N +EAL Sbjct: 288 LKQIQEVGHGWEDIVTAKKTANASEPVRTPGMKYKHYSPTAKVILFVKCGNGVKAVQEAL 347 Query: 250 IRFGNVPIKNIENAIISLNLSKTGK----------LKEAAFNLFNYMKIADDSGASSIAF 299 R+ N I + + + + + + E A NLF ++ D + I Sbjct: 348 SRYPNSKIALLTGSEFEIPETLQAQFAIVDHLGSSITEMAHNLFAKLRNLDKNDMDYIFI 407 Query: 300 SSIPNHGLGIAINNRLERAA 319 +P+ G G+A+ NRL +AA Sbjct: 408 EGVPDAGEGLALMNRLSKAA 427 >gi|331270448|ref|YP_004396940.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum BKT015925] gi|329126998|gb|AEB76943.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum BKT015925] Length = 349 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 105/335 (31%), Positives = 172/335 (51%), Gaps = 27/335 (8%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + +A E L G +A PTETVYGL ++ + A+++++ K RP NPLI H++D Sbjct: 14 DVKVIEEAGEVLREGGLVAFPTETVYGLGANALDSEAVKKIFIAKGRPQDNPLIVHIADF 73 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KK 126 ++ V ++ + + FWPGPLTL++ + +I +++A L++ R+P ++ Sbjct: 74 NLDGLVEEVPSIAKKIMEKFWPGPLTLIMK--KSREIPYVTSAGLESVGIRMPSNIVARE 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LI+ G P+A PSAN SG+ S TN++ + + + + II G ++GLESTIV+ Sbjct: 132 LIKKSGVPIAAPSANISGKPSPTNIERCI-EDLNERVEYIIGGEKCEVGLESTIVDCTIN 190 Query: 187 KKVRILRPGGLEIETLKR-----AISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241 +LRPGG+ +E L+ I + D+ P++PGM HYAP++ V++ A Sbjct: 191 PPC-VLRPGGITLEMLREIEPEIYIDPAIMKKADKDFKPKAPGMKYRHYAPKAPVKIIAG 249 Query: 242 HVNPREALI------------RFGNVPIKNIE----NAIISLNLSKTGKLKEAAFNLFNY 285 ++ A I + G + + + NAII +L L A NLF Sbjct: 250 NLVKSIAKINEMVQNYIDDGKKVGIMATEETKGKYSNAIIK-SLGSREDLHTIAHNLFKT 308 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + D I + +GIAI NRL++AA Sbjct: 309 LSEFDSENVDIILSEAFKEEEIGIAIMNRLKKAAG 343 >gi|121534884|ref|ZP_01666703.1| Sua5/YciO/YrdC/YwlC family protein [Thermosinus carboxydivorans Nor1] gi|121306483|gb|EAX47406.1| Sua5/YciO/YrdC/YwlC family protein [Thermosinus carboxydivorans Nor1] Length = 346 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 118/335 (35%), Positives = 168/335 (50%), Gaps = 26/335 (7%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L +A + L G +A PTETVYGL + + A R+Y K RP+ NPLI H++D Sbjct: 14 DKRILAEAADILRRGGLVAFPTETVYGLGANGLDAQAAARIYAAKGRPSDNPLILHIADS 73 Query: 68 SMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FT 124 V A P + L +WPGPLT+VLD TD+ P + T L T R+P Sbjct: 74 GDVALLARRIPANAAALMARYWPGPLTIVLD---RTDVVPDAVTGGLSTVAVRLPASTVA 130 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 ++LI G P+A PSAN SG+ S T + +L + + I ++D G IG+EST+V+ Sbjct: 131 RELIRLAGVPVAAPSANTSGRPSPTTAQAVL-ADLSGRIDAVLDAGPCDIGVESTVVD-- 187 Query: 185 CEKKV-RILRPGGLEIETLKRAIS-VELEYCVDE-TSTPQSPGMLKSHYAPRSQVRL--- 238 C V +LRPGG+ +E L + VEL+ + E T+TP+SPGM +HYAP + + L Sbjct: 188 CTTPVPTLLRPGGITLEMLLETLGEVELDSALAESTATPRSPGMKYTHYAPAAPMTLVEG 247 Query: 239 ----RAIHVNPREALI---RFGNVPIKN----IENAIISLNLSKTGKLKEAAFNLFNYMK 287 + EAL R G V + +A++ A NL+ ++ Sbjct: 248 AGAAAMVRRKVTEALAAGWRVGAVVSAETAALLPSAVVKAVYGPRDDAAAIAANLYQALR 307 Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 D I I GLG+A+ NRL +AA R Sbjct: 308 HFDACPVDVIYAEGITESGLGLAVMNRLRKAAGYR 342 >gi|150866973|ref|XP_001386755.2| hypothetical protein PICST_33949 [Scheffersomyces stipitis CBS 6054] gi|149388229|gb|ABN68726.2| predicted protein [Scheffersomyces stipitis CBS 6054] Length = 387 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 113/347 (32%), Positives = 171/347 (49%), Gaps = 40/347 (11%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 T+ N A E + + PTETVYGLA + N ++R +Y K RPA NPLI HVS Sbjct: 31 TEDNIRLAANELVHTTNCVGFPTETVYGLAGSALNDDSVRSIYRAKNRPADNPLIVHVSS 90 Query: 67 ISMVK-----KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 + +K + + + L+L FWPGPLT++L + + I L TAN T R+P Sbjct: 91 LDQLKRKLLPRDYEIPSVYLNLIDKFWPGPLTILLPIHKDSPISKLVTANQSTFAVRMPN 150 Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 + LI PLA PSAN S + S T +H+ + +IP I+DGG +G+EST+ Sbjct: 151 HPIARALIAVSDTPLAAPSANASTRPSPTLAQHVF-HDLQGKIPYILDGGACDVGVESTV 209 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVEL-------EYCVDETSTPQSPGMLKSHYAPR 233 V+ + +LRPGG+ +E + R + EL + + ++PGM HY+P Sbjct: 210 VDGLVSPPM-LLRPGGVSVEEI-RTVGGELWENVILSKKTAGKNEAVRTPGMKYRHYSPT 267 Query: 234 SQVRL--------RAI-------HVNPRE---ALIR---FGNVPIKNIENAIISLNLSKT 272 ++V L +A+ +++P + AL++ F + N N I L T Sbjct: 268 AKVVLFVDCGDGAKAVNDYIDQNNIDPVQIKIALLKSRTFQDADKIN-SNIYIQRELGTT 326 Query: 273 GKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 G E + NLF ++ D+ G I I G+A+ NRL +AA Sbjct: 327 G--SEISHNLFKALREMDEYGVDLIMIEGIDESNEGLAVMNRLSKAA 371 >gi|300361414|ref|ZP_07057591.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus gasseri JV-V03] gi|300354033|gb|EFJ69904.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus gasseri JV-V03] Length = 334 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 112/318 (35%), Positives = 163/318 (51%), Gaps = 16/318 (5%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 +A E L G +A PTETVYGL + N A++ +Y K RP+ NPLI VSD M++ + Sbjct: 17 EAVELLKKGELVAFPTETVYGLGALATNEKAVKGVYAAKGRPSDNPLIVTVSDEKMMENY 76 Query: 74 ASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY 131 + P + L K FWPGPLT++L + T + T L TA FR P T LI Sbjct: 77 VNEVPERAKKLIKHFWPGPLTIILFVKEGT-LPDAVTGGLPTAAFRCPDDEMTHDLISEL 135 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 G P+ PSAN S + S T +H+ + +I IID G ++IGLESTIV++ E + Sbjct: 136 GKPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDNGPTEIGLESTIVDLSVETPT-V 193 Query: 192 LRPGGLEIETLKRAISVELEYCVDETST---PQSPGMLKSHYAPRSQVRLRAIHVNPREA 248 LRPG + E + + + E+ T T P++PGM HYAP + V + + + Sbjct: 194 LRPGEITPEEISKVLGEEVLMNKGTTKTKGVPKAPGMKYRHYAPSAPVFI--VDKEADFS 251 Query: 249 LIRF----GNVPIKNIENAIISLNLSKTGK-LKEAAFNLFNYMKIADDSGASSIAFSSIP 303 I++ G + + + I S N GK + +AA NLF ++ D + Sbjct: 252 KIKWDKETGVAALDEVLDKIDSSNKYSLGKTIDKAAHNLFGALRYFDSENNIKRIYVQGF 311 Query: 304 NHG-LGIAINNRLERAAA 320 +HG + A NRL +AAA Sbjct: 312 DHGAISPAYMNRLNKAAA 329 >gi|222529067|ref|YP_002572949.1| Sua5/YciO/YrdC/YwlC family protein [Caldicellulosiruptor bescii DSM 6725] gi|222455914|gb|ACM60176.1| Sua5/YciO/YrdC/YwlC family protein [Caldicellulosiruptor bescii DSM 6725] Length = 348 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 118/335 (35%), Positives = 164/335 (48%), Gaps = 27/335 (8%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L KA L G +A PTETVYGL ++ A+ +++ K RP NPLI H+S Sbjct: 12 DYKKLEKAALILREGGLVAFPTETVYGLGANALLKDAVDKIFLAKGRPQDNPLIVHISSK 71 Query: 68 SMVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 M++ A + D L ++FWPGPLT+VL I TA L T R+P Sbjct: 72 DMLEMCAEITDDRVYMLIEMFWPGPLTIVLP--KKNVIAENVTAGLSTVGVRMPANKIAL 129 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +LI G P+A PSAN SG+ S T KH++ + K + +IIDGG GLEST+V++ Sbjct: 130 ELIRLSGVPVAAPSANVSGKPSPTEAKHVIEDLMGK-VDVIIDGGKCSFGLESTVVDLSG 188 Query: 186 EKKVRILRPGGLEIETLKRAIS-VELEYCVDETST---PQSPGMLKSHYAPRSQV----- 236 EK V ILRPG + LK +S +E V E T P+SPGM HYAP +++ Sbjct: 189 EKAV-ILRPGAISYFALKEVLSDIEYSKAVVEGLTGTVPRSPGMKYKHYAPDAKLIIVKG 247 Query: 237 ----RLRAIHVNPREALIRFGNVPI-------KNIENAIISLNLSKTGKLKEAAFNLFNY 285 R+ ++ +E + V I N E+ L L KE NLF+ Sbjct: 248 RIDKRIDKMNDMKKEFEYKGYRVGILCFYETAHNFESQ-YKLILGSMFDAKECGRNLFSI 306 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ + G I +A+ NRL +AAA Sbjct: 307 LRKFNQLGVDYILCEWGKFDLEFLALENRLYKAAA 341 >gi|313884935|ref|ZP_07818687.1| Sua5/YciO/YrdC/YwlC family protein [Eremococcus coleocola ACS-139-V-Col8] gi|312619626|gb|EFR31063.1| Sua5/YciO/YrdC/YwlC family protein [Eremococcus coleocola ACS-139-V-Col8] Length = 346 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 108/332 (32%), Positives = 173/332 (52%), Gaps = 24/332 (7%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + L +A + L G +A PTETV+GL + N A++ +++ K RP NPLI HV+ I Sbjct: 13 DQLDQAAQCLKEGGLVAFPTETVFGLGAIANNEAAVQSVFKTKGRPNDNPLIIHVASIES 72 Query: 70 VKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 V + ASV PL+ L + FWPGPLT++L + + T P +TA TA FR+P T L Sbjct: 73 VHHYAASVSPLAQALMEKFWPGPLTIILPIKTGT-FAPAATAGQNTAGFRMPDQDQTLAL 131 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG-ISKIGLESTIVNVQCE 186 I+ G PL PSAN SG+ S T++ H+L K ++ + ++ IG+EST+V + Sbjct: 132 IDKVGFPLVGPSANLSGKPSPTSLAHVLHDFNGKIAGVVANQAELTAIGVESTVV-LPLA 190 Query: 187 KKVRILRPGGLEIETLKRAISV--ELEYCVDETSTP--QSPGMLKSHYAPRSQVRLRAI- 241 + ILRPG + ++ ++ AI V + ++ + SPG+ HY+P+ V L A Sbjct: 191 DHIEILRPGHVTVDMIEEAIGVPAHVRTAAEQLANQAIMSPGVKYRHYSPKQPVYLMAFD 250 Query: 242 HV--NPREALIRFGN-----------VPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKI 288 H + +E + +F ++N + + S +L K G + A +LF ++ Sbjct: 251 HTLEDWQEEIDKFPEAVAILAYQDHITSLQNHQKVVASYSLGKKGDWESATRHLFAGLRA 310 Query: 289 ADDSGASSIAFSSI-PNHGLGIAINNRLERAA 319 ++S A + + P A NRL +AA Sbjct: 311 LEESSAKILMVQGLDPKVADHQAYMNRLSKAA 342 >gi|330834140|ref|YP_004408868.1| translation factor SUA5 [Metallosphaera cuprina Ar-4] gi|329566279|gb|AEB94384.1| translation factor SUA5 [Metallosphaera cuprina Ar-4] Length = 350 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 107/327 (32%), Positives = 165/327 (50%), Gaps = 18/327 (5%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 +++ +RKA E + +G +A PTETVYGL ++ + A ++++ K+RP NPLI H++D+ Sbjct: 12 ETDLIRKAAEVIRSGGLVAFPTETVYGLGANAFDGKAAEKVFKAKRRPMDNPLIVHIADV 71 Query: 68 SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 +++ AS + P + LA+ WPGPLT VL S + +T L T R+P Sbjct: 72 GQLEEVASDLSPEVMDLAQKVWPGPLTFVLKKTSKVPLE--TTGGLNTVAVRMPAHPIAL 129 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LI G P+A PSAN + + S T +H++ + + ++IDGG S G+ESTI+N+ Sbjct: 130 SLIRESGVPIAAPSANLATKPSPTLAEHVI-QDLDGSVDIVIDGGESFFGVESTIINLTV 188 Query: 186 EKKVRILRPGGLEIE---TLKRAISVELEYCV-DETSTPQSPGMLKSHYAPRSQVRL--- 238 + V +LRPG +E TL I+V E E +PGM HYAP + L Sbjct: 189 KPPV-LLRPGPFTVEELTTLVGEINVPEELTRGKEFGVALAPGMKYKHYAPDKTLYLVER 247 Query: 239 RAIHVNPREALIRFGNVPIKNIENAIISLN-----LSKTGKLKEAAFNLFNYMKIADDSG 293 ++I ++ L V + E L L + L A NLF + D Sbjct: 248 KSIFLDVVNILREKKRVAVLCSEETCSKLEEPRIILGNSENLYSIAKNLFKSFRQLDGLD 307 Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAA 320 P G+G+AI NR+++A A Sbjct: 308 VDLGVIEPFPEKGIGLAIMNRVKKATA 334 >gi|312884326|ref|ZP_07744035.1| putative translation factor [Vibrio caribbenthicus ATCC BAA-2122] gi|309368099|gb|EFP95642.1| putative translation factor [Vibrio caribbenthicus ATCC BAA-2122] Length = 320 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 104/326 (31%), Positives = 171/326 (52%), Gaps = 22/326 (6%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 Q +S +S + +A + L +G +AIPTETVYGLA D+ NP A+++++ K RPA +PLI Sbjct: 4 QHLSAQNSLDIEQAQKILTSGELVAIPTETVYGLAADASNPDAVKKIFAAKGRPADHPLI 63 Query: 62 CHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 H+ + + A P + +AK FWPGP+TL+L+ D + + T L T R+P Sbjct: 64 VHIGRLEQLSDWARDIPQQAYTIAKAFWPGPVTLLLN--KADDANTVVTGGLGTIGIRMP 121 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 L+E G +A PSAN ++S T+ H++ +S+ +I ++DGG GLEST Sbjct: 122 AHPVFSTLLEASGMAVAAPSANPYKKLSPTSAVHVI-NSLEGKIAAVLDGGDCHHGLEST 180 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQS-----PGMLKSHYAPRS 234 I+++ + R+LR G + + L + +E TP S PG + SHY P + Sbjct: 181 IIDL-TQTPFRVLRSGPISAKQLADVLG-------EEVLTPTSHSAAVPGNVTSHYQPNT 232 Query: 235 QVRLRAIHVNPREALIRFGNVPIKNIE--NAIISLNLSKTGKLKEAAFNLFNYMKIADDS 292 +VRL + + ++ + IE + I+S+ + K + + A +L+ + AD Sbjct: 233 RVRLVSADELSSKPELKVACLHYSAIETNDNIVSIKMPK--DVAQYAHDLYRTLNDADKL 290 Query: 293 GASSIAFSSIPNHGLGIAINNRLERA 318 G I P +A+++RL RA Sbjct: 291 GCDEIWVERPPLTEDWVAVHDRLNRA 316 >gi|258512736|ref|YP_003186170.1| Sua5/YciO/YrdC/YwlC family protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479462|gb|ACV59781.1| Sua5/YciO/YrdC/YwlC family protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 360 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 106/346 (30%), Positives = 173/346 (50%), Gaps = 44/346 (12%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS--- 68 LR+ + L G +A PTETVYGL ++ A+RR++ K+RP NPLI H++D + Sbjct: 19 LREPAQSLRRGGLVAFPTETVYGLGANALEEEAVRRIFAAKERPRDNPLIVHIADDAKLR 78 Query: 69 -MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 ++ ++ + ++ L + FWPGPLTL+L + + P R+P + Sbjct: 79 DVIDENQPLHEDAVRLMRAFWPGPLTLLLP--AGARLAPSVHPGQPLVGVRMPDHPVARA 136 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LI G P+A PSANRSG+ S T ++ + + I ++DGG IG+EST++ ++ + Sbjct: 137 LIAEAGVPVAAPSANRSGRPSPTTPDDVV-ADLDGRIDWLVDGGPCPIGVESTVLLLEPD 195 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCV---DETSTPQSPGMLKSHYAPRSQVR------ 237 RILRPGG+ E + I + Y D S P +PGM HYAP ++V Sbjct: 196 -CARILRPGGVTQEMIASVIDRPVLYAADVFDVASAPLAPGMKYRHYAPNARVHVWWGEP 254 Query: 238 -----------LRAIH---------VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKE 277 L A+ + P + + RFG + + A++ + +E Sbjct: 255 EAIDEAMRAFLLEAVQDDDLMVPALIAPDDFVRRFGWA-LSDERQAVLPADTYA----EE 309 Query: 278 AAFNLFNYMKIADDSGASSIAFSSI-PNHGLGIAINNRLERAAAPR 322 A +L+ ++ D +GA+ + + P HG+G A+ NRL +A+A R Sbjct: 310 LARHLYRLLRAFDGAGATDVLVHGVDPTHGVGAAVMNRLYKASAGR 355 >gi|303228444|ref|ZP_07315277.1| Sua5/YciO/YrdC/YwlC family protein [Veillonella atypica ACS-134-V-Col7a] gi|302516946|gb|EFL58855.1| Sua5/YciO/YrdC/YwlC family protein [Veillonella atypica ACS-134-V-Col7a] Length = 344 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 110/342 (32%), Positives = 169/342 (49%), Gaps = 33/342 (9%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 I +T N L+ L G +AIPTETVYGL + + A+ ++Y K RP+ NPLI Sbjct: 6 ITELTKEN-LQLVAYALRHGDVVAIPTETVYGLGANGLDADAMDKIYAAKGRPSDNPLIL 64 Query: 63 HVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVP 120 HV + +K P + L + FWPGPLT+ L +D+ P +T L R P Sbjct: 65 HVPNAESIKPLVKEIPETAKALIEAFWPGPLTIT---LPKSDLVPDRATGGLARVALRCP 121 Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + ++E G P+A PSAN SG+ S T + + + IP I+D GI IG+EST Sbjct: 122 DHAVCRNILELAGVPIAAPSANISGRPSPTTAQSVY-DDMNGRIPYIVDAGICTIGVEST 180 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAI-SVELE-YCVDETSTPQSPGMLKSHYAPRSQVR 237 +V V+ + V ILRPGG+ E L++ + +V + + + P++PGM HYAP + Sbjct: 181 VVEVR-DDGVTILRPGGITKEMLEQVVDNVSYDPFLSSQNEAPKAPGMKYKHYAPDAP-- 237 Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNLSK-------------------TGKLKEA 278 +RA NP++ F NV I+ E + +S+ +G Sbjct: 238 MRAFIGNPKDVAETFSNV-IREQETKRGAFLVSQETYDLLKDSVHGEFHVYGHSGDAVAL 296 Query: 279 AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 A + + + ++ I + N GLG+A+ NR+E+A A Sbjct: 297 AHDFYKTLHHFNECDVDYILAEGVVNTGLGVAVMNRMEKACA 338 >gi|296242927|ref|YP_003650414.1| translation factor SUA5 [Thermosphaera aggregans DSM 11486] gi|296095511|gb|ADG91462.1| translation factor SUA5 [Thermosphaera aggregans DSM 11486] Length = 356 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 106/340 (31%), Positives = 169/340 (49%), Gaps = 32/340 (9%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 ++ A L G +A PTETVYGL + A+ R++++K RP+ NPLI HVS + MV+ Sbjct: 17 IQYAAGVLRRGGLVAFPTETVYGLGALVWDERAVTRIFQVKGRPSDNPLIVHVSSVEMVE 76 Query: 72 KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 K AS P + L + WPGPLT+VL + + TA L T R+P LI Sbjct: 77 KVASRIPEDAYRLMEKAWPGPLTIVLP--RSERVPRTVTAGLDTVAVRMPSHPVALSLIR 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G P+A PSAN SG+ S T H++ + + + +I+D G + G+EST+VN+ E Sbjct: 135 ETGEPVAAPSANLSGRPSPTTGYHVIRDLMGR-VEVILDAGATLQGVESTVVNILTEPPT 193 Query: 190 RILRPGGLEIETLKRAISVEL-----EYCVDETSTPQSPGMLKSHYAPRSQVRL------ 238 +LRPG + +E ++R + + ++ P +PGM HYAP +++ L Sbjct: 194 -LLRPGAMPVEDVERILGRRILIPGFAKGLEHAEKPLAPGMKYRHYAPSAKLVLVEAPLY 252 Query: 239 -------RAIHVNPREALIRFGNVPIKNIE--------NAIISLNLSKTGKLKEAAFNLF 283 A ++ + +L G + + + + + +L+L L E A NLF Sbjct: 253 TLECLKELAGYIRRQASLNSDGKLCVVATDETLQYYSGSGLKTLSLGSRRDLFEIARNLF 312 Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRN 323 ++ D+ P GLG+ I NRL +AA+ ++ Sbjct: 313 PTLRKVDEEDCRIAYVEGFPEQGLGLTIMNRLRKAASEKH 352 >gi|197302164|ref|ZP_03167223.1| hypothetical protein RUMLAC_00890 [Ruminococcus lactaris ATCC 29176] gi|197298595|gb|EDY33136.1| hypothetical protein RUMLAC_00890 [Ruminococcus lactaris ATCC 29176] Length = 508 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 111/344 (32%), Positives = 161/344 (46%), Gaps = 45/344 (13%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + +A L G +A PTETVYGL D+ A ++ Y K RP+ NPLI H++D Sbjct: 14 DPEVIEEAGNILKNGGLVAFPTETVYGLGADALKEEAAKKTYAAKGRPSDNPLIVHIADY 73 Query: 68 SMVKK-----HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPC 121 +K A D L+ H FWPGPLT++ + ++I P +T L T R+P Sbjct: 74 EDLKAVAVNIPAKTDALAAH----FWPGPLTMIFE---KSEIVPYGTTGGLDTVAVRMPS 126 Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 +I G ++ PSAN SG+ S T +H+ S + +I +I+D G IGLESTI Sbjct: 127 DPVAAAVIRAAGGFVSAPSANTSGRPSPTTAQHV-SEDLDGKIDMILDSGSVDIGLESTI 185 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDET-------STPQSPGMLKSHYAPR 233 +++ E + ILRPG + + + I VDET P++PGM HYAP+ Sbjct: 186 LDMTVEPPM-ILRPGAITADMFEEVIG---PVSVDETILGSESNKAPKAPGMKYRHYAPK 241 Query: 234 S-----------------QVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLK 276 + Q+ A R +I G + + I+ N+ K Sbjct: 242 AKLIIAEGDIREEVLAIRQLAYAAHRQGERVGIIATGET-LPFYKYGIVK-NIGTRENEK 299 Query: 277 EAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 A NL+ ++ DD I S G+G AI NRLE+AA Sbjct: 300 TIARNLYRVLREFDDEKVDIIYSESFAMQGIGSAIMNRLEKAAG 343 >gi|241957109|ref|XP_002421274.1| protein required for respiratory growth, putative [Candida dubliniensis CD36] gi|223644618|emb|CAX40606.1| protein required for respiratory growth, putative [Candida dubliniensis CD36] Length = 382 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 104/322 (32%), Positives = 163/322 (50%), Gaps = 31/322 (9%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK---HASVDPLSL 81 I PTETVYGLA + + ++R +Y+ K RPA NPLI H+S I +K+ + + + L Sbjct: 56 IGFPTETVYGLAGSALSDESVRSIYKAKNRPADNPLIVHISSIEQLKRKLINYEIPQIYL 115 Query: 82 HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140 +L FWPGPLT++L + + I L TAN T R+P + LI P+A PSA Sbjct: 116 NLISHFWPGPLTILLPITKDSPISKLVTANQNTFAVRMPNHPVARALIAMSDTPIAAPSA 175 Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200 N S + S T +H+ + +IPLI+DGG +G+EST+++ + + +LRPGG+ +E Sbjct: 176 NASTRPSPTLAEHVY-HDLNGKIPLILDGGACDVGVESTVIDGLVDPPM-LLRPGGVSLE 233 Query: 201 TLKRAISVELEYCVDETSTP------QSPGMLKSHYAPRSQVRLR---AIHVNPREALIR 251 +KR E+ + T ++PGM HY+P ++V L +N E+ + Sbjct: 234 DIKRVGGKPWEHIIVAKKTAGKLEPVKTPGMKYRHYSPTAKVVLFVNCGDGINAIESYLT 293 Query: 252 FGNVPIKNIENAIISLN-------------LSKTGKLKEAAFNLFNYMKIADDSGASSIA 298 + + A++ L TG E + NLF Y++ D+ + Sbjct: 294 NNKLDASATKIALLKSKHFSEDHPDFVIKRLGTTG--NEISHNLFKYLREVDEEDKVELI 351 Query: 299 F-SSIPNHGLGIAINNRLERAA 319 F I G+A+ NRL +AA Sbjct: 352 FVEGIDETNEGLAVMNRLSKAA 373 >gi|203288164|ref|YP_002223179.1| hypothetical protein BRE_741 [Borrelia recurrentis A1] gi|201085384|gb|ACH94958.1| uncharacterized conserved protein [Borrelia recurrentis A1] Length = 334 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 107/333 (32%), Positives = 169/333 (50%), Gaps = 27/333 (8%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 + + + KA +F+++G + PTETVYG+ ++ + AIR L+ +KKRP NPLI HV Sbjct: 4 EVIKESEIEKAVKFINSGELVVFPTETVYGIGANAYDENAIRMLFIVKKRPITNPLIVHV 63 Query: 65 SDISMVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 I +K+ P S + L K F PGP+T +L + I L L++ R+P Sbjct: 64 ESIEKIKELVEYIPDSAMILMKKFTPGPITFILK--NAGKISKLINGGLESIAVRIPSDP 121 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG-----GISKIGLE 177 KLI+ P+A PSAN S + S TN + + KE+ ++ G +S+IG+E Sbjct: 122 IALKLIKMSKVPIAAPSANLSKRPSATNFEMAI-----KELNGLVKGIIQKNEVSQIGIE 176 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAIS--VELEYCVDETSTPQSPGMLKSHYAPRSQ 235 ST+++ + V ILRPG + E ++R ++ +EY + + QSPG L HY PR Sbjct: 177 STVISFDAKSNVSILRPGSITKEMIERELNGKFNVEYSLGKKILQQSPGNLLEHYRPRIP 236 Query: 236 VRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKT---------GKLKEAAFNLFNYM 286 V L N R+ I + I ++N I S +K L+E A N++ Sbjct: 237 VYLFRQKDNIRK-YISQQDTKILIMKNTIKSYWFNKLWNTNHICVFNTLEEYAKNIYKVF 295 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 + + I + N+ LG +INNRL++A+ Sbjct: 296 -VESERTHKQILAEFVDNNQLGYSINNRLKKAS 327 >gi|320157253|ref|YP_004189632.1| yrdC/Sua5 family protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA [Vibrio vulnificus MO6-24/O] gi|319932565|gb|ADV87429.1| yrdC/Sua5 family protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA [Vibrio vulnificus MO6-24/O] Length = 320 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 107/327 (32%), Positives = 168/327 (51%), Gaps = 28/327 (8%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 +S + + +A E L +G +AIPTETVYGLA D+ NP A+++++ K RPA +PLI H Sbjct: 6 LSALEQKDIDQAKEILASGELVAIPTETVYGLAADATNPDAVKKIFAAKGRPADHPLIVH 65 Query: 64 VSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC- 121 + + + A P + LA+ +WPGP+TL+L + P+ T L+T R+P Sbjct: 66 IGRVEQLTDWAIDIPEEAYTLAQAYWPGPVTLLLK--KAPHVTPVVTGGLETIGIRMPAH 123 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 L+++ G +A PSAN ++S T+ KH++ +S+ +I ++DGG GLESTIV Sbjct: 124 DVFATLLQSSGMAVAAPSANPYKKLSPTSAKHVM-NSLGGKIAAVLDGGDCAHGLESTIV 182 Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQS-----PGMLKSHYAPRSQV 236 ++ EK RILR G + L + +E S+P S PG + SHY P ++V Sbjct: 183 DL-TEKPFRILRTGPVTAAQLSATLG-------EEVSSPVSHNVAVPGNVTSHYQPNTRV 234 Query: 237 RL-----RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291 RL A+ + + A + + P EN S + E + +L+ + AD Sbjct: 235 RLVQASDLALVGDKKIAYLHY--TPFTAQENVEARQMPS---SVAEYSHDLYRTLDEADK 289 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERA 318 G I P A+++RL RA Sbjct: 290 WGCEEIWVERPPVTENWFAVHDRLNRA 316 >gi|227499752|ref|ZP_03929852.1| Sua5/YciO/YrdC/YwlC family protein [Anaerococcus tetradius ATCC 35098] gi|227218138|gb|EEI83404.1| Sua5/YciO/YrdC/YwlC family protein [Anaerococcus tetradius ATCC 35098] Length = 349 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 109/340 (32%), Positives = 169/340 (49%), Gaps = 42/340 (12%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + KA +L G +AIPTETVYGL + + A +++ K RPA NPLI H+S+I Sbjct: 19 DQEKIIKAANYLKEGKLVAIPTETVYGLGANGLDEKACVNIFKTKNRPADNPLILHISNI 78 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCG-FT 124 M+ +V+ + L KL WPGPLT++ +D+ P + TA T R P Sbjct: 79 DMLYNLVENVNDDAKKLMKL-WPGPLTMI---FKKSDLIPDVVTAKGDTVAVRFPVDEIA 134 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + +IE P+A PSAN SG+ S TN + + +IPLIIDGG IG+EST++++ Sbjct: 135 RAIIEKANVPIAAPSANISGRPSPTNA-YDCYYDLNGKIPLIIDGGSCDIGIESTVIDM- 192 Query: 185 CEKKVRILRPGGLEIETLKRAI-SVELEYC-VDETSTPQSPGMLKSHYAPRSQVRL---- 238 E ILRPG +E ++ I V L+ VD+ P+SPG HYAP++++++ Sbjct: 193 SENPPTILRPGYYTLEMIREIIPEVRLDDALVDDNKIPKSPGQKYKHYAPKARMQVYVGK 252 Query: 239 ---------------RAIHVNP---REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAF 280 +HV E + RF + ++ L + + Sbjct: 253 GAADFIYKKARAYSNSGLHVGVLVFEEDMERFKDFD---------RISFGDRDDLSQMSH 303 Query: 281 NLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 LF ++ D G I + ++ LG +I NR++++AA Sbjct: 304 VLFTALRKMDKMGVDLILAEGVLDNNLGKSIMNRMKKSAA 343 >gi|15897573|ref|NP_342178.1| hypothetical protein SSO0664 [Sulfolobus solfataricus P2] gi|284174894|ref|ZP_06388863.1| hypothetical protein Ssol98_09601 [Sulfolobus solfataricus 98/2] gi|6015811|emb|CAB57638.1| hypothetical protein [Sulfolobus solfataricus P2] gi|13813830|gb|AAK40968.1| SUA5 related conserved hypothetical protein [Sulfolobus solfataricus P2] gi|261602336|gb|ACX91939.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus solfataricus 98/2] Length = 358 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 106/329 (32%), Positives = 162/329 (49%), Gaps = 22/329 (6%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + ++KA + AG + PTETVYGL ++ +P A+++++ K RP NPLI H+S+I Sbjct: 15 DKIKKAANVIKAGGTVVFPTETVYGLGANALDPEAVKKIFIAKNRPMDNPLIVHISNIDQ 74 Query: 70 VKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + A P ++L + WPGPLT VL T + +T L+T R+P L Sbjct: 75 LYEVAKDIPKKIINLVNIVWPGPLTFVLK--KTEKVPKETTGGLETVAVRMPAHPVALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I G P+A PSAN + + S T V+H++ I ++ +I+D G + G+EST++NV + Sbjct: 133 INESGVPIAAPSANLATKPSPTRVEHVI-DDIYGKVDVILDSGETFFGVESTVINVTVDP 191 Query: 188 KVRILRPGGLEIETLKR----AISVELEYCVDETSTPQSPGMLKSHYAP---------RS 234 V +LRPG +E L+R + E E +PGM HYAP RS Sbjct: 192 PV-LLRPGPFSVEELERLFGKVVVPEQAKGTAEFDVALAPGMKYKHYAPTKRLLVVENRS 250 Query: 235 QVRLRAIHVNPRE---ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291 +R + R AL+ V + I + L L E + NLF+ + D Sbjct: 251 VLRGVINELQKRSCRIALLCASEVCKQFRGEKIEIIELGSENNLYEISRNLFDSFRKLDK 310 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320 S SI G+G+AI NR +A+ Sbjct: 311 SNVDIGVIHSISEKGIGLAIMNRTRKASG 339 >gi|290969301|ref|ZP_06560826.1| Sua5/YciO/YrdC/YwlC family protein [Megasphaera genomosp. type_1 str. 28L] gi|290780807|gb|EFD93410.1| Sua5/YciO/YrdC/YwlC family protein [Megasphaera genomosp. type_1 str. 28L] Length = 348 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 115/350 (32%), Positives = 164/350 (46%), Gaps = 32/350 (9%) Query: 2 QIMSITD----SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 +++ ITD LR+A + G + PTETVYGL + + TA RR++E K RP+ Sbjct: 4 ELLKITDIEQQQELLRQAGACIRQGGLVVFPTETVYGLGANGLDETACRRIFEAKGRPSD 63 Query: 58 NPLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 NPLI V+D ++ + + PL+ L FWPGPLTLVL S + ++T L T Sbjct: 64 NPLILTVADRQGAEQISDRISPLAEKLMARFWPGPLTLVLPRRSC--VPDVATGGLDTVA 121 Query: 117 FRVPCGFTKKLIETYGH-PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R P + Y P+A PSAN S + S T L + + +IIDGG IG Sbjct: 122 VRCPDHDICRAFLQYAQVPVAGPSANLSTRPSPTTAAEAL-HDMDGRVQMIIDGGACHIG 180 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKR-AISVELE-YCVDETSTPQSPGMLKSHYAPR 233 +ESTIV +V ILRPGG+ E L A V L+ + V P++PGM HYAP Sbjct: 181 VESTIVECTAADEVTILRPGGITPEMLAEVAAKVVLDTHLVSGKGVPKAPGMKYRHYAPE 240 Query: 234 SQVRLRAIHVNPREALIRFGNVPIKNIENA--IISLNLSKT----------------GKL 275 + V+ V +A+I + + A + LS+ G Sbjct: 241 APVQ---AFVGSEQAVIEAVQMAYTEAKAAGKTVGFLLSREVATQVGAPHTFIWGHHGDA 297 Query: 276 KEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325 A L+ + D I +P GLG+A+ NRL++AA Q+ Sbjct: 298 AALANKLYTGLLFFDKERVDLILAEGVPAVGLGLAVMNRLKKAAGGHVQA 347 >gi|119720716|ref|YP_921211.1| Sua5/YciO/YrdC/YwlC family protein [Thermofilum pendens Hrk 5] gi|119525836|gb|ABL79208.1| translation factor SUA5 [Thermofilum pendens Hrk 5] Length = 366 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 106/346 (30%), Positives = 167/346 (48%), Gaps = 39/346 (11%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D+ ++ +A L G +A PTETVYGL A+ R++++K+RP NPLI H+S Sbjct: 26 DAKSIEEAASILRKGGVVAFPTETVYGLGAVYHMRDAVIRVFKVKRRPPDNPLILHISSF 85 Query: 68 SMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTK 125 S + AS P ++H LA+ FWPGPLT+VL T+ + T L+ R+P Sbjct: 86 SQIYTLASEVPEAVHRLAEKFWPGPLTVVLP--KTSRVPYEVTGGLEKVAVRMPAHNVAL 143 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +LIE G P+A PSAN SG+ S T +H+L + + EI ++D G + G+EST++++ Sbjct: 144 RLIEAVGDPIAAPSANLSGRPSPTTAQHVL-ADLGDEIDGVLDAGETLYGVESTVIDLTA 202 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCV-------DETSTPQSPGMLKSHYAPRSQVRL 238 + V +LRPG + +E +++ + + CV E +PG HY+PR+Q+ L Sbjct: 203 DPPV-LLRPGAVPLEEVEKVLG---KVCVPAFARGLGEAERALAPGTRYRHYSPRAQLVL 258 Query: 239 -----------------RAIHVNPREALIRFGNVPIKNIEN-----AIISLNLSKTGKLK 276 R + N L R G + + L+L Sbjct: 259 VELKDYSDLSKLVDRVKRLVAENAGRGL-RVGVLCTDETREHYSGLGAVVLSLGSRRDPF 317 Query: 277 EAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 A L++ + D G I + GLG+ I NR+ +A+ R Sbjct: 318 GIARRLYSSFREMDSLGVDVIVAEGVDERGLGLTIMNRMRKASTKR 363 >gi|289615809|emb|CBI57550.1| unnamed protein product [Sordaria macrospora] Length = 453 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 100/285 (35%), Positives = 147/285 (51%), Gaps = 38/285 (13%) Query: 12 LRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 LR+A L +P+A PTETVYGL D+ A++ +Y K RP+ NPLI HV D+SM+ Sbjct: 57 LREAAHHLRTTDIPVAFPTETVYGLGADATRSAAVKGIYAAKGRPSDNPLIVHVCDLSML 116 Query: 71 K----------------KHASVDPLS--LH-LAKLFWPGPLTLVLDLLSTTDIHPLSTAN 111 + + DP+ H L FWPGPLT++L S + + P TA Sbjct: 117 RSLISSPSSSSSSSGQNQEEEKDPIPEIYHPLITRFWPGPLTILLPNPSPSLLAPEVTAG 176 Query: 112 LKTACFRVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 L T R+P + LI+ PLA PSAN S + S T +H+L + I LI+DGG Sbjct: 177 LPTFGCRMPASALARSLIKLANAPLAAPSANASTKPSPTAAQHVL-DDLAGRIELILDGG 235 Query: 171 ISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRA---ISVELEYC----VDETSTPQSP 223 +G+EST+V+ C V +LRPGG+ +E ++ VE Y V + P++P Sbjct: 236 SCSVGVESTVVDGLCSPPV-VLRPGGVSLEEIRSVPGWEGVEKAYKDQAEVGSKTAPRAP 294 Query: 224 GMLKSHYAPRSQVRLRAIH--------VNPREALIRFGNVPIKNI 260 GM HY+P+++V L + + REA+ G +K++ Sbjct: 295 GMKYKHYSPKARVVLYEVEGGRGEVPGADVREAVEAVGKKEVKSV 339 >gi|322708850|gb|EFZ00427.1| translation initiation protein Sua5 [Metarhizium anisopliae ARSEF 23] Length = 437 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 87/242 (35%), Positives = 132/242 (54%), Gaps = 16/242 (6%) Query: 11 ALRKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 AL A E+L P+A PTETVYGL D+ +++ +Y K RP+ NPLI HV D+ M Sbjct: 42 ALEPAAEYLRTKDTPVAFPTETVYGLGADATRSASVKGIYSAKGRPSDNPLIVHVCDLDM 101 Query: 70 V------KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 + + ++ L K FWPGPLT++L + + P TA L + R+P Sbjct: 102 LRTLLGSRGQDAIPARYQSLVKKFWPGPLTILLPNPDPSPLAPEVTAGLDSFGVRMPSSP 161 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 LI+ G PLA PSAN S + S T +H+ + I +I+DGG ++G+EST+V+ Sbjct: 162 LALTLIKLAGVPLAAPSANASTKPSPTTAQHV-KDDLDGRIEMILDGGSCQVGVESTVVD 220 Query: 183 VQCEKKVRILRPGGLEIETLK------RAISVELEYCVDETSTPQSPGMLKSHYAPRSQV 236 C+ V +LRPGG+ I+ L+ + + + + P++PGM HY+PR++V Sbjct: 221 GLCDPPV-VLRPGGVGIDELRSCPGWEHVVKAYKDQSEEGKAAPRAPGMKYKHYSPRARV 279 Query: 237 RL 238 L Sbjct: 280 VL 281 >gi|313123399|ref|YP_004033658.1| translation factor (sua5 family) [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279962|gb|ADQ60681.1| Putative translation factor (Sua5 family) [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 331 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 111/330 (33%), Positives = 162/330 (49%), Gaps = 34/330 (10%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +A L G +A PTETVYGL + +++++Y K RP+ NPLI V+D +M++ Sbjct: 11 LDEAVSLLRKGELVAFPTETVYGLGALATRDDSVKKVYAAKGRPSDNPLIVTVADEAMMR 70 Query: 72 KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 +A P + L K FWPGPLT++L L + +T L T FR P T LI Sbjct: 71 PYAKEVPERAEKLIKHFWPGPLTILL-LAKEGALPESATGGLPTVAFRCPDDQLTHDLIA 129 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G+P+ PSAN S + S T +H+ + +I I+DGG +++GLESTIV++ V Sbjct: 130 KLGYPIVGPSANTSTKPSPTTAQHVY-HDLKGKIAGIVDGGETEVGLESTIVDLSVNPAV 188 Query: 190 RILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246 +LRPG + E + + + E+ V + P++PGM HYAP +QV + V+ Sbjct: 189 -VLRPGKITPEEISQVLGEEVLINRGQVSDKDVPKAPGMKYRHYAPSAQVYV----VDQA 243 Query: 247 EALIRFG---------------NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291 E + N+P+ EN NL K L EA NLF ++ DD Sbjct: 244 ETFAKLDLDVSCGVMATSDLLENLPVPE-EN---KFNLGKN--LTEADHNLFAGLRYFDD 297 Query: 292 SGA-SSIAFSSIPNHGLGIAINNRLERAAA 320 SI +A NRL +AA Sbjct: 298 RPEIKSIYVEGFDQGEESLAYMNRLNKAAG 327 >gi|23100449|ref|NP_693916.1| hypothetical protein OB2994 [Oceanobacillus iheyensis HTE831] gi|22778682|dbj|BAC14950.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 339 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 108/333 (32%), Positives = 168/333 (50%), Gaps = 23/333 (6%) Query: 4 MSITDSNA--LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 M+ D N +++A L AG +A PTETVYGL D+ NP A+ ++++ K RP NPLI Sbjct: 8 MNDIDKNQSYIKEAAGILQAGQTVAFPTETVYGLGADATNPQAVSKIFQAKGRPEDNPLI 67 Query: 62 CHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVL--DLLSTTDIHPLSTANLKTACFR 118 HV+ +++ + P + L F PGPLT +L + + +++ TA L T R Sbjct: 68 AHVATKEQLQRLVTSIPGYVDKLIAAFSPGPLTFILPSNGICASNV----TAGLDTIGVR 123 Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 +P +L++ P+A PSAN SG+ S T H+ + + I ++DGG + +GLE Sbjct: 124 IPNHPVALQLLKEVDIPIAAPSANISGKPSPTTADHVF-NDLEGRIAGLVDGGPTGVGLE 182 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQ 235 ST+++ E V ILRPGG+ E L+ I L +D P+SPGM HYAP Sbjct: 183 STVIDCTQEIPV-ILRPGGVTKENLESVIGHVLVDPGIIDGEGKPKSPGMKYKHYAPEVP 241 Query: 236 VRLRAIHVNPREALI--------RFGNVPIKNIENAIISLNLSKTGK-LKEAAFNLFNYM 286 + + N + LI R G + + N+ + G ++E A +L++ + Sbjct: 242 LWIFEGDSNGFQELIEKEQQSNHRVGVLCSNQFAVQLSHDNIYQLGDSMEEIASSLYDGL 301 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 + I S P G+G AI NRL +A+ Sbjct: 302 RYFKQQAVDVIICESFPESGIGQAIMNRLRKAS 334 >gi|313636281|gb|EFS02090.1| protein Sua5 [Listeria seeligeri FSL S4-171] Length = 303 Score = 143 bits (361), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 106/305 (34%), Positives = 167/305 (54%), Gaps = 19/305 (6%) Query: 38 DSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVL 96 D+ N AI+++YE K RP+ NPLI H++ + AS ++ L + FWPGPLT++L Sbjct: 2 DATNQAAIQKIYEAKGRPSDNPLIVHIASRDQMDAFVASYPQKAIKLMEKFWPGPLTVIL 61 Query: 97 DLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHIL 155 L + +S A L T R+P + LI+ G P+A PSAN+SG+ S T+ H++ Sbjct: 62 PLKKDSLASNVS-AGLSTVGVRMPDHPVSLALIKEAGIPVAAPSANQSGKPSPTSASHVI 120 Query: 156 SSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAI-SVEL-EYC 213 + ++ IIDGG + +GLEST+++ E V ILRPGG+ E +++ I SVEL Sbjct: 121 -EDLDDKVAGIIDGGATGVGLESTVIDCSTEIPV-ILRPGGITKEQIEQVIGSVELANND 178 Query: 214 VDETSTPQSPGMLKSHYAPRSQVRL----RAI---HVNPREAL-IRFGNVPIKNIENAII 265 ET P++PGM +HYAP++ V L +A +N EA + G + K + + + Sbjct: 179 TKETEKPKAPGMKYTHYAPKAPVYLVEGSKAFWQKEINKVEAAHKKLGILATKELLDGLT 238 Query: 266 SLNLSKTG----KLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 + +++T ++E A L+ ++ D + I P LG A+ NRLE+AA Sbjct: 239 TNAVTQTTGSIESMEEIANQLYKGLRAFDHAEVDIIFAEVYPETELGAAVMNRLEKAAGN 298 Query: 322 RNQSQ 326 R S+ Sbjct: 299 RRISE 303 >gi|300812486|ref|ZP_07092912.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496547|gb|EFK31643.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|325684406|gb|EGD26574.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 331 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 111/330 (33%), Positives = 162/330 (49%), Gaps = 34/330 (10%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +A L G +A PTETVYGL + +++++Y K RP+ NPLI V+D +M++ Sbjct: 11 LDEAVSLLREGELVAFPTETVYGLGALATRDDSVKKVYAAKGRPSDNPLIVTVADEAMMR 70 Query: 72 KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 +A P + L K FWPGPLT++L L + +T L T FR P T LI Sbjct: 71 PYAKEVPERAEKLIKHFWPGPLTILL-LAKEGALPESATGGLPTVAFRCPDDQLTHDLIA 129 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G+P+ PSAN S + S T +H+ + +I I+DGG +++GLESTIV++ V Sbjct: 130 KLGYPIVGPSANTSTKPSPTTAQHVY-HDLKGKIAGIVDGGETEVGLESTIVDLSVNPAV 188 Query: 190 RILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246 +LRPG + E + + + E+ V + P++PGM HYAP +QV + V+ Sbjct: 189 -VLRPGKITPEEISQVLGEEVLINRGQVSDKDVPKAPGMKYRHYAPSAQVYV----VDQA 243 Query: 247 EALIRFG---------------NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291 E + N+P+ EN NL K L EA NLF ++ DD Sbjct: 244 ETFAKLDLDVSCGVMATSDLLENLPVPE-EN---KFNLGKN--LTEADHNLFAGLRYFDD 297 Query: 292 SGA-SSIAFSSIPNHGLGIAINNRLERAAA 320 SI +A NRL +AA Sbjct: 298 RPEIKSIYVEGFDQGEESLAYMNRLNKAAG 327 >gi|269957074|ref|YP_003326863.1| Sua5/YciO/YrdC/YwlC family protein [Xylanimonas cellulosilytica DSM 15894] gi|269305755|gb|ACZ31305.1| Sua5/YciO/YrdC/YwlC family protein [Xylanimonas cellulosilytica DSM 15894] Length = 346 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 115/341 (33%), Positives = 166/341 (48%), Gaps = 53/341 (15%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS---DISMVK 71 A L AG +A+PTETVYGLA D+ +P + +Y K RP+ NPLI HV+ D+ V Sbjct: 16 AAGILRAGGIVALPTETVYGLAGDALDPAVVGAIYAAKGRPSDNPLIVHVAAFDDLPAVV 75 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPC--GFTKKLI 128 + V + LA+ FWPGPLT+V L D+ P TA L T RVP F + ++ Sbjct: 76 R--DVPGSARALAEAFWPGPLTMV---LPRRDVVPDRVTAGLDTVAVRVPAHEAF-RAVL 129 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 G PLA PSAN++G S T +H+L + IP ++DGG +G+EST+V++ Sbjct: 130 RLAGVPLAAPSANQAGSPSPTTAEHVL-HDLDGRIPAVLDGGPCTVGVESTVVDLTSTPP 188 Query: 189 VRILRPGGLEIETLKRAI-------SVELEYCVDETSTPQSPGMLKSHYAP--------- 232 R+LRPGG+ +E L+ + +V E D+ P SPGM HYAP Sbjct: 189 -RLLRPGGVSLEELRAVLGDVDVDPAVAGELAPDQ--VPGSPGMKYRHYAPAAPVVVVDG 245 Query: 233 ---------RSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLF 283 R Q L + + E F + + +A +L++ LF Sbjct: 246 PTTEAAAWVRGQPELHPVVLCSEEEAAAFAGLDVVTYGSAADPASLAR---------GLF 296 Query: 284 NYMKIADDSGASSIAFSSIPNHGLGI--AINNRLERAAAPR 322 ++ D + + F+ P GI A+ NRL +AAA R Sbjct: 297 GALRSVDRPEITRV-FARCPADDAGIARAVRNRLLKAAAFR 336 >gi|72162360|ref|YP_290017.1| translation factor SUA5 [Thermobifida fusca YX] gi|5107073|gb|AAD39949.1|AF144563_3 unknown [Thermobifida fusca] gi|71916092|gb|AAZ55994.1| translation factor SUA5 [Thermobifida fusca YX] Length = 335 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 107/322 (33%), Positives = 165/322 (51%), Gaps = 23/322 (7%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 AL +A L AG +A PTETVYGL D+ NP A+ R++ K RPA +PLI HV+ Sbjct: 19 ALDEAVRVLRAGGLVAFPTETVYGLGADAANPAAVARIFAAKGRPADHPLIVHVASAESA 78 Query: 71 KKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + A+ PL+ LA FWPGPLTL+L + + T T RVP L+ Sbjct: 79 RDWAATFPPLARTLADAFWPGPLTLILP--RSAQVPDAVTGGRATVGLRVPDQPVALALL 136 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E +G +A PSANR G++S T H+ ++ + + L++DGG +G+ESTIV V + + Sbjct: 137 ERFGGGIAAPSANRFGRVSPTTAAHV-AADLGDRVDLVLDGGPCTVGVESTIVEV-ADGR 194 Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL---------- 238 + +LR GG+ + L ++ T ++PGML +HYAP ++V L Sbjct: 195 LTVLRTGGITPDDLAAVTGAPVDTT--PTGPARAPGMLAAHYAPAARVVLAEAAEAADTV 252 Query: 239 -RAIHVNPREA-LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296 + + R A L VP +N+ ++ L ++ A L+ ++ D +GA Sbjct: 253 AQWVEKGHRVAVLAETATVP-ENLPEGVVV--LPSPASARDYARVLYQRLRDVDAAGADV 309 Query: 297 IAFSSIPNHGLGIAINNRLERA 318 + G+G+A+ +RL RA Sbjct: 310 VVAIPPEPAGIGLAVRDRLLRA 331 >gi|116629881|ref|YP_815053.1| putative translation factor (SUA5) [Lactobacillus gasseri ATCC 33323] gi|311110483|ref|ZP_07711880.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus gasseri MV-22] gi|116095463|gb|ABJ60615.1| translation factor SUA5 [Lactobacillus gasseri ATCC 33323] gi|311065637|gb|EFQ45977.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus gasseri MV-22] Length = 334 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 112/320 (35%), Positives = 160/320 (50%), Gaps = 20/320 (6%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 +A E L G +A PTETVYGL + N A++ +Y K RP+ NPLI VSD M++ + Sbjct: 17 EAVELLKKGELVAFPTETVYGLGALATNEKAVKGVYAAKGRPSDNPLIVTVSDEKMMENY 76 Query: 74 ASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY 131 + P + L K FWPGPLT++L + T + T L TA FR P T LI Sbjct: 77 VNEVPERAKKLIKHFWPGPLTIILFVKEGT-LPDAVTGGLPTAAFRCPDDELTHDLISEL 135 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 G P+ PSAN S + S T H+ + +I IID G ++IGLESTIV++ E + Sbjct: 136 GKPIVGPSANTSTKPSPTTAGHVY-HDLKGKIAGIIDNGPTEIGLESTIVDLSVETPT-V 193 Query: 192 LRPGGLEIETLKRAISVELEYCVDETST---PQSPGMLKSHYAPRSQVRLRAIHVNPREA 248 LRPG + E + + + E+ T T P++PGM HYAP + V + V+ E Sbjct: 194 LRPGEITPEEISKVLGEEVLMNKGTTQTKGVPKAPGMKYRHYAPSAPVFI----VDKEED 249 Query: 249 LIRF------GNVPIKNIENAIISLNLSKTG-KLKEAAFNLFNYMKIADDSGASSIAFSS 301 + G + + + I S N G + +AA NLF ++ D + Sbjct: 250 FSKIKWDKETGVAALDEVLDKINSSNKYSLGTTIDKAAHNLFGALRYFDSENNIKRIYVQ 309 Query: 302 IPNHG-LGIAINNRLERAAA 320 +HG + A NRL +AAA Sbjct: 310 GFDHGTISPAYMNRLNKAAA 329 >gi|167038488|ref|YP_001666066.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116883|ref|YP_004187042.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166857322|gb|ABY95730.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929974|gb|ADV80659.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 354 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 106/329 (32%), Positives = 164/329 (49%), Gaps = 28/329 (8%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A + + G +A PTETVYG+ +S N AI++++ K RP NPLI H++++ + Sbjct: 20 AAKVIKEGGLVAFPTETVYGIGANSFNEEAIKKIFIAKGRPQDNPLIVHIAELEQIYDLV 79 Query: 75 SVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132 P L K FWPGPLTL+ + + ++TA + T R+P LI+ Sbjct: 80 KEVPQKAKTLMKKFWPGPLTLIFK--KSQKVPYVNTAGMDTVAIRMPSNTIAHLLIKRAE 137 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192 P++ PSAN SG+ S T+ H++ K + +IIDGG +G+EST++++ EK IL Sbjct: 138 VPISAPSANVSGKPSPTDASHVIEDLYGK-VDVIIDGGKCDVGVESTVLDL-TEKVPVIL 195 Query: 193 RPGGLEIETLKRAI-SVELEYCV----DETSTPQSPGMLKSHYAPRSQVRL--------- 238 RPG + +E L+ I +VE++ + E P+SPGM HY+P ++V + Sbjct: 196 RPGAVTLEMLREVIGNVEVDPSLLKKPQEDLKPKSPGMKYKHYSPNAEVYIVTGDLEKVV 255 Query: 239 RAIHVNPREALIRFGNVPI-------KNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291 + I E L V I E I + + + + A NLF ++ D Sbjct: 256 KKIQELTEEQLKYGKKVGIMATVQTSTQYEKGEI-IVVGDRNRPETIAKNLFEVLRQFDK 314 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320 G I S +G+AI NRLE+AA Sbjct: 315 KGVDVIFAESFEYDNIGLAIMNRLEKAAG 343 >gi|116513793|ref|YP_812699.1| putative translation factor (SUA5) [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093108|gb|ABJ58261.1| translation factor SUA5 [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|325125451|gb|ADY84781.1| Putative translation factor SUA5 family [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 331 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 113/331 (34%), Positives = 163/331 (49%), Gaps = 36/331 (10%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +A L G +A PTETVYGL + +++++Y K RP+ NPLI V+D +M++ Sbjct: 11 LDEAVSLLREGGLVAFPTETVYGLGALATRDDSVKKVYAAKGRPSDNPLIVTVADEAMMR 70 Query: 72 KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKKLI 128 +A P + L K FWPGPLT++ LL+ P S T L T FR P T LI Sbjct: 71 PYAKEVPERAEKLIKHFWPGPLTIL--LLAKEGALPESVTGGLPTVAFRCPDDQLTHDLI 128 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 G+P+ PSAN S + S T +H+ + +I I+DGG +++GLESTIV++ Sbjct: 129 AKLGYPIVGPSANTSTKPSPTTAQHVY-HDLKGKIAGIVDGGETEVGLESTIVDLSVNPA 187 Query: 189 VRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245 V +LRPG + E + + + E+ V + P++PGM HYAP +QV + V+ Sbjct: 188 V-VLRPGKITPEEISQVLGEEVLINRGQVSDKDVPKAPGMKYRHYAPSAQVYV----VDQ 242 Query: 246 REALIRFG---------------NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD 290 E + N+P+ EN NL K L EA NLF ++ D Sbjct: 243 AETFAKLDLDASCGVMATSDLLENLPVPE-EN---KFNLGKN--LTEADHNLFAGLRYFD 296 Query: 291 DSGA-SSIAFSSIPNHGLGIAINNRLERAAA 320 D SI +A NRL +AA Sbjct: 297 DRPEIKSIYVEGFDQGEESLAYMNRLNKAAG 327 >gi|302669642|ref|YP_003829602.1| Sua5/YciO/YrdC/YwlC family protein [Butyrivibrio proteoclasticus B316] gi|302394115|gb|ADL33020.1| Sua5/YciO/YrdC/YwlC family protein [Butyrivibrio proteoclasticus B316] Length = 340 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 111/335 (33%), Positives = 172/335 (51%), Gaps = 33/335 (9%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS---DI 67 L++A + + G +A PTETVYGL D+ NP + +++Y K RP+ NPLI HV+ D+ Sbjct: 8 GLKRAGQIIRDGGLVAFPTETVYGLGGDALNPMSSKKIYAAKGRPSDNPLIVHVANMDDL 67 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCG-FTK 125 + + K V + LA FWPGPLT++++ D P +T L T R+P Sbjct: 68 AGIVKE--VPEAARKLADAFWPGPLTMIMN---KNDKVPYETTGGLDTVAIRMPNNKIAL 122 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +LI G +A PSAN SG+ S T ++ + + +I +IIDGG IGLESTIV++ Sbjct: 123 ELIRQSGGYIAAPSANTSGRPSPTVARYCV-EDLSGKIEMIIDGGQVGIGLESTIVDLTS 181 Query: 186 EKKVRILRPGGLEIETLKRA---ISVELEYCVDETST--PQSPGMLKSHYAPRSQVRL-- 238 + ILRPG + + LK IS++ + +D ST P++PGM HYAP+ + + Sbjct: 182 PVPM-ILRPGYITAQMLKDVLGEISID-KTIIDSKSTERPKAPGMKYKHYAPKGDLMIVQ 239 Query: 239 -----RAIHVNPREALI-----RFGNVP---IKNIENAIISLNLSKTGKLKEAAFNLFNY 285 ++N + AL R G + + + A + ++ + A LF Sbjct: 240 GAQEQVVSYINEQSALAASEGKRVGIIATDTTRELYKADVVKSVGNRQDERTIAHELFKV 299 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ DD + S + G+G AI NRL +AA Sbjct: 300 LREFDDENIDVMFSESFDDSGIGQAIMNRLLKAAG 334 >gi|332637162|ref|ZP_08416025.1| SUA5 family translation factor [Weissella cibaria KACC 11862] Length = 342 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 105/336 (31%), Positives = 164/336 (48%), Gaps = 20/336 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I ++ L A + G +A PTETVYGL D+ N A+ ++Y K RP+ NPL Sbjct: 1 MAETKIWSADELPAAVRAIKRGSLVAFPTETVYGLGADAFNEKAVSKVYAAKGRPSDNPL 60 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 I HV+D + V + A V+ + L FWPGPLT++L + T + T L T R+P Sbjct: 61 IVHVADKAQVDRFAVVNAWAEKLMDAFWPGPLTMILPVKPGT-VSTTVTGGLDTVAARMP 119 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 T+ LI P+ PSAN SG+ S T +H+ + +I I+D G +KIG+EST Sbjct: 120 DNDVTRALIREADAPMVGPSANTSGKPSPTTAQHVY-HDLHGKISGILDDGATKIGVEST 178 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEY---CVDETSTPQSPGMLKSHYAPRSQV 236 ++++ + +LRPG + ++ + V ++ VD P++PGM HYAP V Sbjct: 179 VIDLSTDTPA-VLRPGKITPAQIEAVLGVPVDSEIKHVDADEAPKAPGMKYRHYAPDKDV 237 Query: 237 RLRAIHVNPREALIR-----------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNY 285 + A + +A+I N I + A + S AA LF Sbjct: 238 YMVAPE-DWTQAIIWAQSQLEPVGLMLTNDLIVQHQLAGMDFVWSLGDNGDTAAAKLFAG 296 Query: 286 MKIADD-SGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ DD ++ +++PN A NNRL +++ Sbjct: 297 LRHFDDRKDVLTVLVAAMPNTPENSAYNNRLGKSSG 332 >gi|82701740|ref|YP_411306.1| Sua5/YciO/YrdC/YwlC [Nitrosospira multiformis ATCC 25196] gi|82409805|gb|ABB73914.1| translation factor SUA5 [Nitrosospira multiformis ATCC 25196] Length = 364 Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 103/325 (31%), Positives = 159/325 (48%), Gaps = 24/325 (7%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A L G +A PTETVYGL + +P+A+ R++EIKKRP +PLI H +D S + A Sbjct: 12 AAALLKKGGVVAFPTETVYGLGAEVSSPSAVARIFEIKKRPLDHPLIVHFADASRLSHWA 71 Query: 75 -SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132 V + LA+ FWPGPLTL+L + + T T RVP L+ G Sbjct: 72 REVPQQAWRLAECFWPGPLTLILP--RSRHVPEKVTGGQDTVGLRVPDHPVALALLRELG 129 Query: 133 --HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 LA PSANR G +S T H+ E+ +++DGG ++GLESTIV + + V Sbjct: 130 PDRALAAPSANRFGHVSPTTAAHV-REEFGDELDMVLDGGPCQVGLESTIVGFEGQTAV- 187 Query: 191 ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL--------RAIH 242 ILRPGG+++ L + + + + + PG L SHYAP + + L RA+ Sbjct: 188 ILRPGGIQLAALAEVLDGNVMLSQEAERSVRVPGALPSHYAPSTPLELLPADPLWARALE 247 Query: 243 VNPREALI-------RFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 + + + R ++P + EN + + + + +E A L+ ++ D Sbjct: 248 LEAKGMRVAVMGWRRREHSLPRHHPENEPVVFS-AMPEEPEEYARQLYATLRRFDRGHFD 306 Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320 + P +AI +RL RA++ Sbjct: 307 RLLVEKPPETAAWVAIADRLRRASS 331 >gi|291561899|emb|CBL40702.1| Sua5/YciO/YrdC/YwlC family protein [butyrate-producing bacterium SS3/4] Length = 356 Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 114/336 (33%), Positives = 165/336 (49%), Gaps = 34/336 (10%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI--- 67 L +A E L G +A PTETVYGL ++ N A +++Y K RP+ NPLI H+S + Sbjct: 23 GLLEAAEILKNGGLVAFPTETVYGLGANALNEEAAKKIYAAKGRPSDNPLIAHISCMEEL 82 Query: 68 -SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCG-FT 124 ++VK+ + LA+ +WPGPLT++ DI P +T L T R+P Sbjct: 83 PAIVKE---IPEAGRKLAEKYWPGPLTMI---FPKKDIVPYGTTGGLDTVAVRMPVDPVA 136 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 LI G P+A PSAN SG+ S T +H++ K I +IIDGG IG+ESTIV+V Sbjct: 137 NCLIHLAGVPIAAPSANTSGRPSPTKAEHVIEDMDGK-IEMIIDGGAVGIGVESTIVDVS 195 Query: 185 CEKKVRILRPGGLEIETLKRAIS-VELEYC----VDETSTPQSPGMLKSHYAPRSQVRLR 239 E +LRPG + IE L+ + V+++ V P++PGM HYAP++ + L Sbjct: 196 GEIPT-LLRPGAITIEMLRETLGQVDIDPVILGPVSGDIKPKAPGMKYRHYAPKADMTLV 254 Query: 240 AIHVNPREALI------------RFGNVPIKNIENAIISLNLSKTGKLKE---AAFNLFN 284 ++ A I + G + + ++ NL G + A NLF Sbjct: 255 EGDMDKVVAYINEQTKKAEAEGKKVGIICTEESQDMYQGGNLEVIGSREHEETVAHNLFA 314 Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ D I S LG AI NRL +AA Sbjct: 315 VLRDFDARKVDCIFSESFSKDQLGQAIMNRLCKAAG 350 >gi|154297352|ref|XP_001549103.1| hypothetical protein BC1G_12080 [Botryotinia fuckeliana B05.10] gi|150858585|gb|EDN33777.1| hypothetical protein BC1G_12080 [Botryotinia fuckeliana B05.10] Length = 334 Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 91/250 (36%), Positives = 141/250 (56%), Gaps = 23/250 (9%) Query: 10 NALRKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++ +A E+L +P+A PTETVYGL D+ A++ +Y+ K RP+ NPLI HV D++ Sbjct: 45 QSVAEAAEYLKTQSIPVAFPTETVYGLGADATRSDAVKGIYKAKGRPSDNPLIIHVCDLT 104 Query: 69 MVK------KHASVDP-------LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115 M++ + SVD + L K FWPGPLT++L S + + P TA L T Sbjct: 105 MLRSLLTSTDNQSVDADFSEIPDIYKPLIKRFWPGPLTVLLPNPSPSKLAPEVTAGLPTF 164 Query: 116 CFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174 R+P LI G PLA PSAN S + S T +H+ + I +I+DGG ++ Sbjct: 165 GARMPSSPLALSLIRLAGVPLAAPSANASTKPSCTTAQHV-HHDLDGRIEIILDGGACQV 223 Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAISVE--LEYCVDETS----TPQSPGMLKS 228 G+EST+V+ C+ V +LRPGG+ I+ ++ E ++ D++ P++PGM Sbjct: 224 GVESTVVDGMCDPPV-VLRPGGVSIDEIRECPGWEGVVKGYKDQSEIGDKAPRAPGMKYK 282 Query: 229 HYAPRSQVRL 238 HY+P+++V L Sbjct: 283 HYSPKAKVIL 292 >gi|167038769|ref|YP_001661754.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter sp. X514] gi|300913646|ref|ZP_07130963.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter sp. X561] gi|307723339|ref|YP_003903090.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter sp. X513] gi|166853009|gb|ABY91418.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter sp. X514] gi|300890331|gb|EFK85476.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter sp. X561] gi|307580400|gb|ADN53799.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter sp. X513] Length = 354 Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 108/334 (32%), Positives = 166/334 (49%), Gaps = 28/334 (8%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A + + G +A PTETVYG+ +S N AI++++ K RP NPLI H++++ + Sbjct: 20 AAKVIKEGGLVAFPTETVYGIGANSFNEEAIKKIFIAKGRPQDNPLIVHIAELEQIYDLV 79 Query: 75 SVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132 P L K FWPGPLTL+ + + ++TA + T R+P LI+ Sbjct: 80 KEVPQKAKTLMKKFWPGPLTLIFK--KSQKVPYVNTAGMDTVAIRMPSNTIAHLLIKRAE 137 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192 P++ PSAN SG+ S T+ H++ K + +IIDGG +G+EST++++ EK IL Sbjct: 138 VPISAPSANVSGKPSPTDASHVIEDLYGK-VDVIIDGGKCDVGVESTVLDL-TEKVPVIL 195 Query: 193 RPGGLEIETLKRAI-SVELEYCV----DETSTPQSPGMLKSHYAPRSQVRL--------- 238 RPG + +E LK I +VE++ + E P+SPGM HY+P ++V + Sbjct: 196 RPGAVTLEMLKEVIGNVEVDPSLLKKPKEDLKPKSPGMKYKHYSPNAEVYIVTGDLEKVV 255 Query: 239 RAIHVNPREALIRFGNVPI-------KNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291 + I E L V I E I + + + + A NLF ++ D Sbjct: 256 KKIQELTEEQLKYGKKVGIMATVQTSTQYEKGEI-IVVGDRNRPETIAKNLFAVLRQFDK 314 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325 G I S +G+AI NRLE+AA + S Sbjct: 315 KGVDVIFAESFGYDNIGLAIMNRLEKAAGYKEIS 348 >gi|255658857|ref|ZP_05404266.1| Sua5/YciO/YrdC/YwlC family protein [Mitsuokella multacida DSM 20544] gi|260849260|gb|EEX69267.1| Sua5/YciO/YrdC/YwlC family protein [Mitsuokella multacida DSM 20544] Length = 352 Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 115/346 (33%), Positives = 168/346 (48%), Gaps = 31/346 (8%) Query: 2 QIMSITDSNALR----KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 +I++ITD A R +A + L G +A PTETVYGL + + A R+YE K RP+ Sbjct: 4 EIITITDVKAQREELARAGKVLRGGGLVAFPTETVYGLGANGLDAAACARIYEAKGRPSD 63 Query: 58 NPLICHVSDISMVKK-HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 NPLI HVSD +MV+ A V P++ L F PGP+TL+L + + T L T Sbjct: 64 NPLILHVSDRAMVEMIAAEVTPMAEKLLAAFMPGPITLILRRKAI--VPDRITGGLDTVG 121 Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R+P + +I G P+A PSAN SG+ S T +L + IPLI+DGG G Sbjct: 122 IRMPEHPVARAMIRAAGVPIAAPSANISGRPSPTTAASVL-RDMDGRIPLILDGGPCHFG 180 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAI-SVELE-YCVDETSTPQSPGMLKSHYAPR 233 +ESTIV+ V ILRPG + E L + +L+ V + P++PGM HYAP+ Sbjct: 181 VESTIVDCTGPVAV-ILRPGAITREMLTEVLGGCKLDPALVGADTVPRAPGMKYKHYAPK 239 Query: 234 SQVRLRAIHVNPREALIR------------FGNVPIKNIENAIISL-------NLSKTGK 274 + + L A R G + + ++ L + G Sbjct: 240 APLTLLEGDAAKMAAAFRRQVRRLQGEGHTVGVLASHEVCESLQDLVPEELLKDYGPQGD 299 Query: 275 LKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 L A +++ + +D+ A + GLG+AI NRL +A+A Sbjct: 300 LLAIAAHIYEELIAFNDTQADVLLGEGTTEKGLGLAIMNRLHKASA 345 >gi|238853676|ref|ZP_04644044.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus gasseri 202-4] gi|238833714|gb|EEQ25983.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus gasseri 202-4] Length = 330 Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 112/320 (35%), Positives = 160/320 (50%), Gaps = 20/320 (6%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 +A E L G +A PTETVYGL + N A++ +Y K RP+ NPLI VSD M++ + Sbjct: 13 EAVELLKKGELVAFPTETVYGLGALATNEKAVKGVYAAKGRPSDNPLIVTVSDEKMMENY 72 Query: 74 ASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY 131 + P + L K FWPGPLT++L + T + T L TA FR P T LI Sbjct: 73 VNEVPERAKKLIKHFWPGPLTIILFVKEGT-LPDAVTGGLPTAAFRCPDDELTHDLISEL 131 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 G P+ PSAN S + S T H+ + +I IID G ++IGLESTIV++ E + Sbjct: 132 GKPIVGPSANTSTKPSPTTAGHVY-HDLKGKIAGIIDNGPTEIGLESTIVDLSVETPT-V 189 Query: 192 LRPGGLEIETLKRAISVELEYCVDETST---PQSPGMLKSHYAPRSQVRLRAIHVNPREA 248 LRPG + E + + + E+ T T P++PGM HYAP + V + V+ E Sbjct: 190 LRPGEITPEEISKVLGEEVLMNKGTTQTKGVPKAPGMKYRHYAPSAPVFI----VDKEED 245 Query: 249 LIRF------GNVPIKNIENAIISLNLSKTG-KLKEAAFNLFNYMKIADDSGASSIAFSS 301 + G + + + I S N G + +AA NLF ++ D + Sbjct: 246 FSKIKWDKETGVAALDEVLDKINSSNKYSLGTTIDKAAHNLFGALRYFDSENNIKRIYVQ 305 Query: 302 IPNHG-LGIAINNRLERAAA 320 +HG + A NRL +AAA Sbjct: 306 GFDHGTISPAYMNRLNKAAA 325 >gi|164427896|ref|XP_001728416.1| hypothetical protein NCU11234 [Neurospora crassa OR74A] gi|157071926|gb|EDO65325.1| conserved hypothetical protein [Neurospora crassa OR74A] Length = 449 Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 95/245 (38%), Positives = 133/245 (54%), Gaps = 22/245 (8%) Query: 23 LPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS------- 75 +P+A PTETVYGL D+ A++ +Y K RP+ NPLI HV D+SM++ S Sbjct: 69 IPVAFPTETVYGLGADATRSAAVKGIYAAKGRPSDNPLIVHVCDLSMLRSFISPSFSSAG 128 Query: 76 --VDPLS--LH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIE 129 DP+ H L FWPGPLT++L S + + P TA L T R+P + LI+ Sbjct: 129 DEEDPIPAIYHPLITRFWPGPLTILLPNPSPSLLAPEVTAGLPTFGCRMPASALARSLIK 188 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 PLA PSAN S + S T +H+L + I LI+DGG +G+EST+V+ C V Sbjct: 189 LANAPLAAPSANASTKPSPTAAQHVL-DDLRGRIALILDGGSCSVGVESTVVDGLCSPPV 247 Query: 190 RILRPGGLEIETL---KRAISVELEYC----VDETSTPQSPGMLKSHYAPRSQVRLRAIH 242 +LRPGG+ +E + K VE Y V + P++PGM HY+P+++V L Sbjct: 248 -VLRPGGVSLEEIRECKGWEGVEKAYKDQAEVGGKTAPRAPGMKYKHYSPKARVVLYEAE 306 Query: 243 VNPRE 247 RE Sbjct: 307 GGRRE 311 >gi|253681142|ref|ZP_04861945.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum D str. 1873] gi|253562991|gb|EES92437.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum D str. 1873] Length = 349 Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 104/338 (30%), Positives = 170/338 (50%), Gaps = 33/338 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + +A + L G +A PTETVYGL ++ + A+++++ K RP NPLI H++D Sbjct: 14 DVKVIEEAGKALREGGLVAFPTETVYGLGANALDSEAVKKIFIAKGRPQDNPLIVHIADF 73 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KK 126 ++ + ++ + K FWPGPLT+++ + I +++A L++ R+P ++ Sbjct: 74 NLDNLVEEIPVIAKKIMKKFWPGPLTIIMK--KSNKIPYVTSAGLESVGIRMPSNVVARE 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LI+ G P+A PSAN SG+ S TN++ + + + II G +GLESTIV+ Sbjct: 132 LIKKSGVPIAAPSANISGKPSPTNIERCI-EDLNGRVEYIIGGEKCDVGLESTIVDCTVN 190 Query: 187 KKVRILRPGGLEIETLKR-----AISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241 +LRPGG+ +E L+ I + D+ P++PGM HYAP++ V++ A Sbjct: 191 PPC-VLRPGGITLEMLREIEPEIYIDPAIMKKADKDFKPKAPGMKYRHYAPKAPVKIIAG 249 Query: 242 HVNPREALIRFGNVPIKN-------------------IENAIISLNLSKTGKLKEAAFNL 282 +++ A I N ++N NAII +L L A NL Sbjct: 250 NLSKSIAKI---NEMVQNYIDDGKKVGIMATEETRFKYSNAIIK-SLGSRNDLYSIAHNL 305 Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 F + D+ I + +GIAI NRL++AA Sbjct: 306 FKILSEFDNENVDIILSEAFQEEEIGIAIMNRLKKAAG 343 >gi|329768870|ref|ZP_08260298.1| hypothetical protein HMPREF0433_00062 [Gemella sanguinis M325] gi|328837233|gb|EGF86870.1| hypothetical protein HMPREF0433_00062 [Gemella sanguinis M325] Length = 343 Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 101/332 (30%), Positives = 173/332 (52%), Gaps = 29/332 (8%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 +K ++ + +AIPTETVYGL+ D+ + AI ++YE K RP+ NPLI H D+ + Sbjct: 19 KKLQQYYKSDKLVAIPTETVYGLSADATSDKAISKIYEAKGRPSDNPLIVHFYDVKQLDN 78 Query: 73 --HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIE 129 + D + + + K FWPGP+TL+L+ + I TA L T R+P T +++++ Sbjct: 79 IVDYADDRVGILIDK-FWPGPMTLILNAIENNGISNNVTAGLNTLAVRMPSNTTAREILK 137 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK- 188 LA PSAN SG+ S T +H+ + ++I +II+ S IGLEST+++ C K Sbjct: 138 ETQVLLAAPSANTSGKPSPTKYEHVY-HDLNEKIDVIIEDEQSDIGLESTVID--CTKNP 194 Query: 189 VRILRPGGLEIETLKRAIS----VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244 + I RPG + E ++ + V + +DE P +PGM HY+P +++ L + + Sbjct: 195 LVIARPGEITKEDIENVLGEGSVVYNDEIIDEDQAPIAPGMKYRHYSPEAELIL---YRH 251 Query: 245 PREALIRF--------GNVPIKNIENAIISLNLS------KTGKLKEAAFNLFNYMKIAD 290 E L+ G + N +N + LN+S +++++ NL+N ++ D Sbjct: 252 SFEDLLELLKTKGKETGFITYDNYKNKLKGLNISIKYLADSEKSVEQSSKNLYNILREFD 311 Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 + I I + +A+ NRL +A + + Sbjct: 312 EENIKEIYILPIKENKENVALLNRLNKAISKK 343 >gi|313888752|ref|ZP_07822414.1| Sua5/YciO/YrdC/YwlC family protein [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845229|gb|EFR32628.1| Sua5/YciO/YrdC/YwlC family protein [Peptoniphilus harei ACS-146-V-Sch2b] Length = 351 Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 108/344 (31%), Positives = 173/344 (50%), Gaps = 40/344 (11%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D ++K + L G + +PTETVYGL + N +++YE K RP+ NPLI H++D Sbjct: 14 DKVYIKKISQTLRDGGLVVLPTETVYGLGGNGLNKRTCKKIYEAKGRPSDNPLILHIADN 73 Query: 68 SMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 S + A V ++ K FWPGPLT++ + + +T L T R P Sbjct: 74 SQLDDLVAEVPEVAKKCIKKFWPGPLTIIFK--RSDKVPDEATGGLDTVAIREPSNKIAH 131 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 ++++ P+A PSAN SG+ S T V+H++ + + +I+DGG S +G+EST+++V Sbjct: 132 DILKSVDFPVAAPSANLSGRPSPTKVEHVI-EDLDGRVDIIVDGGHSVVGIESTVLDVTV 190 Query: 186 EKKVRILRPGGLEIETLKRA---ISVELEYCVDETS--TPQSPGMLKSHYAPRSQVRLRA 240 + + ILRPG + +E L+ I+++ +D S P+SPG HYAPR++ A Sbjct: 191 DPPM-ILRPGKITLENLQEVDERITID-SATIDSKSHEVPKSPGQKYRHYAPRAE----A 244 Query: 241 IHVNPREALIRFGNVPIKNIEN------AIIS----------------LNLSKTGKLKEA 278 I R L + N KNIE A+++ +NL L+E Sbjct: 245 ICFGGR--LDKLINEIKKNIEENKGKKIAVLATEETYDEYENTGVELLINLGSREHLEEV 302 Query: 279 AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 A NLF+ ++ D+ I G+G++I NRL +A + Sbjct: 303 ATNLFDALRRCDEEDIDIIFAEGFELRGMGLSIMNRLLKACGGK 346 >gi|104773787|ref|YP_618767.1| Sua5 family translation factor [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103422868|emb|CAI97530.1| Putative translation factor (Sua5 family) [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 331 Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 113/331 (34%), Positives = 163/331 (49%), Gaps = 36/331 (10%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +A L G +A PTETVYGL + +++++Y K RP+ NPLI V+D +M++ Sbjct: 11 LDEAVSLLREGGLVAFPTETVYGLGALATRDDSVKKVYAAKGRPSDNPLIVTVADEAMMR 70 Query: 72 KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKKLI 128 +A P + L K FWPGPLT++ LL+ P S T L T FR P T LI Sbjct: 71 PYAKEVPERAEKLIKHFWPGPLTIL--LLAKEGALPESVTGGLPTVAFRCPDDQLTHDLI 128 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 G+P+ PSAN S + S T +H+ + +I I+DGG +++GLESTIV++ Sbjct: 129 AKLGYPIVGPSANTSTKPSPTTAQHVY-HDLKGKIAGIVDGGETEVGLESTIVDLSVNPA 187 Query: 189 VRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245 V +LRPG + E + + + E+ V + P++PGM HYAP +QV + V+ Sbjct: 188 V-VLRPGKITPEEISQVLGEEVLINRGQVSDKDVPKAPGMKYRHYAPSAQVYV----VDQ 242 Query: 246 REALIRFG---------------NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD 290 E + N+P+ EN NL K L EA NLF ++ D Sbjct: 243 AETFDKLDLDASCGVMATSDLLENLPVPE-EN---KFNLGKN--LTEADHNLFAGLRYFD 296 Query: 291 DSGA-SSIAFSSIPNHGLGIAINNRLERAAA 320 D SI +A NRL +AA Sbjct: 297 DRPEIKSIYVEGFDQGEESLAYMNRLNKAAG 327 >gi|256751355|ref|ZP_05492234.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter ethanolicus CCSD1] gi|256749737|gb|EEU62762.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter ethanolicus CCSD1] Length = 354 Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 105/329 (31%), Positives = 164/329 (49%), Gaps = 28/329 (8%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A + + G +A PTETVYG+ +S N A+++++ K RP NPLI H++++ + Sbjct: 20 AAKVIKEGGLVAFPTETVYGIGANSFNEEAVKKIFIAKGRPQDNPLIVHIAELEQIYDLV 79 Query: 75 SVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132 P L K FWPGPLTL+ + + ++TA + T R+P LI+ Sbjct: 80 KEVPQKAKTLMKKFWPGPLTLIFK--KSQKVPYVNTAGMDTVAIRMPSNTIAHLLIKRAE 137 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192 P++ PSAN SG+ S T+ H++ K + +IIDGG +G+EST++++ EK IL Sbjct: 138 VPISAPSANVSGKPSPTDASHVIEDLYGK-VDVIIDGGKCDVGVESTVLDL-TEKVPVIL 195 Query: 193 RPGGLEIETLKRAI-SVELEYCV----DETSTPQSPGMLKSHYAPRSQVRL--------- 238 RPG + +E L+ I +VE++ + E P+SPGM HY+P ++V + Sbjct: 196 RPGAVTLEMLREVIGNVEVDPSLLKKPQEDLKPKSPGMKYKHYSPNAEVYIVTGDLEKVV 255 Query: 239 RAIHVNPREALIRFGNVPI-------KNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291 + I E L V I E I + + + + A NLF ++ D Sbjct: 256 KKIQELTEEQLKYGKKVGIMATVQTSTQYEKGEI-IVVGDRNRPETIAKNLFEVLRQFDK 314 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320 G I S +G+AI NRLE+AA Sbjct: 315 KGVDVIFAESFEYDNIGLAIMNRLEKAAG 343 >gi|227824239|ref|ZP_03989071.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|226904738|gb|EEH90656.1| conserved hypothetical protein [Acidaminococcus sp. D21] Length = 350 Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 110/320 (34%), Positives = 163/320 (50%), Gaps = 34/320 (10%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS---DISMVKKHASVDPLSL 81 +A PTETVYGL + + A R+++ K RPA NPLI H++ D+ + K S P++ Sbjct: 8 VAFPTETVYGLGANGLDGMACRKIFAAKGRPADNPLILHIAEKEDMEALTKGLS--PMAQ 65 Query: 82 HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140 L + FWPGP+TL++ + I + TA L T R P + LI G P+A PSA Sbjct: 66 ALMEAFWPGPMTLIVP--KSDKIPDVVTAGLDTVAVRFPSHPVARDLIRAAGCPIAAPSA 123 Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200 N+SG+ S T + +L + I ++DGG IG+ESTI++ + V ILRPGG+ E Sbjct: 124 NKSGKPSPTTAQDVL-LDMDGIIAGVLDGGACDIGVESTIIDTTGKDPV-ILRPGGITRE 181 Query: 201 TLKRAIS-VELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA---LIRFG-N 254 +K A+ V L+ V + TP++PGM HYAP + + L V EA LIR Sbjct: 182 MIKMAMGRVALDPGLVKKGETPKAPGMKYRHYAPTAPMLL----VEGPEASLGLIRLAIM 237 Query: 255 VPIKNIENAIISL-----NLSKTGK---------LKEAAFNLFNYMKIADDSGASSIAFS 300 + +I+L + K G L+ A LF+ ++ D G I Sbjct: 238 AEAHGLRTGVIALKATVDHFPKGGNFVIHNGGATLEAYAGTLFHDLRAFDSEGVDLILGE 297 Query: 301 SIPNHGLGIAINNRLERAAA 320 + +G+AI NRL ++A Sbjct: 298 GVREDQMGLAIMNRLRKSAG 317 >gi|312127871|ref|YP_003992745.1| sua5/ycio/yrdc/ywlc family protein [Caldicellulosiruptor hydrothermalis 108] gi|311777890|gb|ADQ07376.1| Sua5/YciO/YrdC/YwlC family protein [Caldicellulosiruptor hydrothermalis 108] Length = 348 Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 116/335 (34%), Positives = 162/335 (48%), Gaps = 27/335 (8%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L KA L G +A PTETVYGL ++ A+ +++ K RP NPLI HVS Sbjct: 12 DYKKLEKAALILREGGLVAFPTETVYGLGANALLKDAVDKIFLAKGRPQDNPLIVHVSSK 71 Query: 68 SMVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 M++ A + D L + FWPGPLT+VL I TA L T R+P Sbjct: 72 EMLEMCAEITDERVYMLIERFWPGPLTIVLP--KKNVIADNVTAGLSTVGVRMPANKIAL 129 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +LI G P+A PSAN SG+ S T KH++ + K + +IIDGG GLEST+V++ Sbjct: 130 ELIRLSGVPVAAPSANVSGKPSPTEAKHVIEDLMGK-VDIIIDGGKCSFGLESTVVDLSG 188 Query: 186 EKKVRILRPGGLEIETLKRAI-SVELEYCVDETST---PQSPGMLKSHYAP-------RS 234 EK V ILRPG + LK + ++E V E T P+SPGM HYAP + Sbjct: 189 EKAV-ILRPGAISYFALKEVLGNIEYSKAVVEGLTGTVPRSPGMKYKHYAPDAKLIIVKG 247 Query: 235 QVRLRAIHVNPREALIRFGN---------VPIKNIENAIISLNLSKTGKLKEAAFNLFNY 285 ++ R +N + + F + N ++ L L KE NLF+ Sbjct: 248 RIDKRIDKINEMKKKLEFKGHRVGILCFYETVHNFDSQ-YKLILGSMFDAKECERNLFSI 306 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ + G I + +A+ NRL +AAA Sbjct: 307 LRKFNQLGVDYILCEWGEFNLEFLALENRLYKAAA 341 >gi|255941190|ref|XP_002561364.1| Pc16g10540 [Penicillium chrysogenum Wisconsin 54-1255] gi|211585987|emb|CAP93724.1| Pc16g10540 [Penicillium chrysogenum Wisconsin 54-1255] Length = 507 Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 89/262 (33%), Positives = 143/262 (54%), Gaps = 26/262 (9%) Query: 8 DSNALRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 +S A+ +A + L + +P+A PTETVYGL D+ ++++ +Y K+RP+ NPLI HV Sbjct: 112 ESQAIEEAVKLLRSSDIPVAFPTETVYGLGADATRSSSVQGIYRAKQRPSDNPLIVHVDS 171 Query: 67 ISMVKK-----------HASVDPLSL-----HLAKLFWPGPLTLVLDLLSTTDIHPLSTA 110 + M+++ P++L L FWPGPLT++L S + + P T+ Sbjct: 172 LDMLERLLNPTPQGSPSSTKTPPIALPSIYKPLIDRFWPGPLTIILPNPSGSILAPEVTS 231 Query: 111 NLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169 +L T R+P + LI PLA PSAN S + S T +H+ + I +I+DG Sbjct: 232 SLTTFGVRMPSSPLARLLIHAADRPLAAPSANASTKPSPTTAQHVY-HDLKDRIDMILDG 290 Query: 170 GISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVE------LEYCVDETSTPQSP 223 G S +G+EST+V+ C+ V +LRPGG+ I+ +++ E + +D P++P Sbjct: 291 GASGVGVESTVVDGLCDPPV-VLRPGGIGIDEIRKCEGWENVTVGYKDGTLDVKEVPRAP 349 Query: 224 GMLKSHYAPRSQVRLRAIHVNP 245 GM HY+P+++V L NP Sbjct: 350 GMKYRHYSPKARVVLFEPTSNP 371 >gi|227873768|ref|ZP_03991997.1| Sua5/YciO/YrdC/YwlC family protein [Oribacterium sinus F0268] gi|227840384|gb|EEJ50785.1| Sua5/YciO/YrdC/YwlC family protein [Oribacterium sinus F0268] Length = 367 Score = 142 bits (358), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 116/364 (31%), Positives = 168/364 (46%), Gaps = 52/364 (14%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I + +A E L G +A PTETVYGL + + A +++Y K RP+ NPLI HVS Sbjct: 5 IFGKEGISEAAEILKGGGLVAFPTETVYGLGGNGLDKEAAKKIYAAKGRPSDNPLILHVS 64 Query: 66 DISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVP-CG 122 I V P + L + FWPGPLTLV L +D+ P ST L+T R P Sbjct: 65 SIEEVYPLVKALPEKAKKLMEAFWPGPLTLV---LPKSDLVPKESTGGLETVALRSPENA 121 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 T LI G P+A PSAN SG+ S T H+ + I I++ G IG+ESTIV+ Sbjct: 122 LTLSLIRACGFPIAGPSANLSGRPSPTEASHVF-EDLGGRIEGILEDGAVGIGVESTIVD 180 Query: 183 VQCEKKVRILRPGGLEIETLKRAISVE-------LEYCVDETSTPQSPGMLKSHYAPRSQ 235 + E +LRPG + IE L+ + + L + E P++PGM HYAP+++ Sbjct: 181 LS-ENCPTLLRPGAITIEDLEEVLGEKVAIDPTLLGKSMAEGFIPKAPGMKYRHYAPKAE 239 Query: 236 VRL--------RAIHVNP----------REALIRFGNVPIKNI-ENAIISLNLSKTGKLK 276 + L ++ VN ++++ +G + + E I L T L Sbjct: 240 MILFKKNLLSDQSQKVNEIPYGEEKKLIAKSILSYGAKELSDCPERKIWILCGEDTASLY 299 Query: 277 EA------------------AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERA 318 E NLF ++ AD+ G I G+G A+ NR+++A Sbjct: 300 EGDSRFTVKILGRREEPLSMTHNLFRLLRQADEEGVELILGECYSEEGVGFALMNRMKKA 359 Query: 319 AAPR 322 A R Sbjct: 360 AGQR 363 >gi|46107246|ref|XP_380682.1| hypothetical protein FG00506.1 [Gibberella zeae PH-1] Length = 433 Score = 142 bits (358), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 91/260 (35%), Positives = 136/260 (52%), Gaps = 17/260 (6%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH- 73 A E P+A PTETVYGL D+ +++ +Y K RP+ NPLI HV D+ M++++ Sbjct: 46 AHELRTTDTPVAFPTETVYGLGADATRTPSVKGIYSAKGRPSDNPLISHVCDLDMLRQYI 105 Query: 74 ----ASVDPLSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + DP+ L FWPGPLT++L + + P TA LKT R+P Sbjct: 106 GHTDETQDPIPERYRALIERFWPGPLTILLPNPVPSKLAPEVTAGLKTFGVRMPSSPLAL 165 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LI+ G PLA PSAN S + S T +H+ + I LI+DGG ++G+EST+V+ C Sbjct: 166 SLIKLAGVPLAAPSANASTKPSPTAAQHV-KDDLDGRIELILDGGHCQVGVESTVVDGLC 224 Query: 186 EKKVRILRPGGLEIETLKRAISVE------LEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 + V +LRPGGL ++ L+ E + + + P++PGM HY+P++ V L Sbjct: 225 DPPV-VLRPGGLGMDELRTCPGWENATIAYKDKSEEGKAAPRAPGMKYKHYSPKATVVLY 283 Query: 240 AIHVNPREALIRFGNVPIKN 259 + I N + N Sbjct: 284 ESSFDKGGDGIALSNFEVSN 303 >gi|312622677|ref|YP_004024290.1| sua5/ycio/yrdc/ywlc family protein [Caldicellulosiruptor kronotskyensis 2002] gi|312203144|gb|ADQ46471.1| Sua5/YciO/YrdC/YwlC family protein [Caldicellulosiruptor kronotskyensis 2002] Length = 348 Score = 142 bits (358), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 117/336 (34%), Positives = 163/336 (48%), Gaps = 29/336 (8%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L KA L G +A PTETVYGL ++ A+ +++ K RP NPLI H+S Sbjct: 12 DYKKLEKAALILREGGLVAFPTETVYGLGANALLKDAVDKIFLAKGRPQDNPLIVHISSK 71 Query: 68 SMVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 M++ A + D L ++FWPGPLT+VL I TA L T R+P Sbjct: 72 DMLEMCAEITDDRVYMLIEMFWPGPLTIVLP--KKNVIAENVTAGLSTVGVRMPANKIAL 129 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +LI G P+A PSAN SG+ S T KH++ + K I +IIDGG GLEST+V++ Sbjct: 130 ELIRLSGVPVAAPSANVSGKPSPTEAKHVIEDLMGK-IDIIIDGGKCSFGLESTVVDLSG 188 Query: 186 EKKVRILRPGGLEIETLKRAIS-VELEYCVDETST---PQSPGMLKSHYAP-------RS 234 E+ + ILRPG + LK + +E V E T P+SPGM HYAP + Sbjct: 189 ERPL-ILRPGAISYFALKEVLGDIEYSKAVVEGLTGTVPRSPGMKYKHYAPDAKLIIVKG 247 Query: 235 QVRLRAIHVNPREALIRFGNVPI---------KNIENAIISLNLSKTGKLKEAAFNLFNY 285 ++ R +N + + F + N E+ L L KE NLF+ Sbjct: 248 RIDKRIDKINEIKKRLEFKGHKVGILCFYETAHNFESQ-YKLILGSMFDAKECGRNLFSI 306 Query: 286 MKIADDSGASSIAFSSIPNHGLG-IAINNRLERAAA 320 ++ + G I N L +A+ NRL +AAA Sbjct: 307 LRKFNQLGVDYI-LCEWGNFDLEFLALENRLYKAAA 341 >gi|190345038|gb|EDK36848.2| hypothetical protein PGUG_00946 [Meyerozyma guilliermondii ATCC 6260] Length = 403 Score = 142 bits (358), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 105/328 (32%), Positives = 165/328 (50%), Gaps = 39/328 (11%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 I PTETVYGL + + +++ +Y+ K RPA NPLI HVS IS +K+ + P + + Sbjct: 75 IGFPTETVYGLGGSALSDESVKSIYKAKNRPADNPLIVHVSSISQLKR--KILPPNYQIP 132 Query: 85 KL-------FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136 K+ FWPGPLT++L + ++ I TA T R+P + LI PLA Sbjct: 133 KVYESLIHKFWPGPLTILLPVHESSPISKFVTAGQSTFAVRIPQHPVARALIALSDTPLA 192 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN S + S T H+ + + IP I+DGG G+EST+V+ + + +LRPGG Sbjct: 193 APSANASTRPSPTIASHVY-NDLQGRIPYILDGGSCDFGVESTVVDGLVDPPM-LLRPGG 250 Query: 197 LEIETLKRAIS------VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALI 250 + +E +K V + +T ++PGM HY+P ++V L + +EA+ Sbjct: 251 VSLEEIKSVGGEPWKDVVVAKKTAGKTEAVRTPGMKYRHYSPTARVVLFVNCGDGKEAID 310 Query: 251 RFGNVPIKNIENAIISL-------NLSKTGKLKEA------------AFNLFNYMKIADD 291 + + N+++ I+L +S T KE+ + NLF Y++ D+ Sbjct: 311 NY--ISSHNLQDCKIALLKSRHFVGISSTSANKESIDRELGTDGHTISHNLFRYLREVDE 368 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAA 319 +G I I G+A+ NRL +AA Sbjct: 369 TGVDMIFVEGIEETNEGLAVMNRLSKAA 396 >gi|289577391|ref|YP_003476018.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter italicus Ab9] gi|289527104|gb|ADD01456.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter italicus Ab9] Length = 354 Score = 142 bits (358), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 101/335 (30%), Positives = 171/335 (51%), Gaps = 30/335 (8%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A + + G +A PTETVYG+ +S + A+++++ +K RP NPLI H++++ + Sbjct: 20 AAKVIREGGLVAFPTETVYGIGANSFDEEAVKKIFMVKGRPQDNPLIVHIAELEQIYDLV 79 Query: 75 SVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132 P L + FWPGPLTL+ + + ++TA + T R+P LI+ Sbjct: 80 EEIPQKAKILMEKFWPGPLTLIFK--KSQKVPYVNTAGMDTVAIRMPSDTIAHLLIKRAK 137 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192 P++ PSAN SG+ S T+ H++ + ++ +IIDGG G+EST++++ EK +L Sbjct: 138 VPISAPSANVSGKPSPTDASHVV-EDLDGKVDIIIDGGKCDFGVESTVLDL-TEKMPVVL 195 Query: 193 RPGGLEIETLKRAI-SVELEYCVDETS----TPQSPGMLKSHYAPRSQVRLRAIHVNP-- 245 RPG + +E LK I +VE++ + + P+SPGM HY+P ++V + H+ Sbjct: 196 RPGAVTLEMLKEVIGNVEVDPSLLKKPKGNLKPKSPGMKYKHYSPNAEVYIVKGHLKKVV 255 Query: 246 ------REALIRFGNVPIKNIENAIISLNLSKTGKL---------KEAAFNLFNYMKIAD 290 E +++G I + + K G++ + A NLF ++ D Sbjct: 256 KKIQELTEEQLKYGKKV--GIMATVQTSTQYKKGEIIVVGDRNRPETIAKNLFAVLRQFD 313 Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325 G I S + +G+AI NRLE+AA + S Sbjct: 314 KKGVDVIFAESFEYNNIGLAIMNRLEKAAGYKEIS 348 >gi|218290081|ref|ZP_03494248.1| Sua5/YciO/YrdC/YwlC family protein [Alicyclobacillus acidocaldarius LAA1] gi|218239915|gb|EED07103.1| Sua5/YciO/YrdC/YwlC family protein [Alicyclobacillus acidocaldarius LAA1] Length = 360 Score = 142 bits (358), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 107/348 (30%), Positives = 172/348 (49%), Gaps = 48/348 (13%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI---- 67 LR+ + L G +A PTETVYGL ++ A+RR++ K+RP NPLI H++D Sbjct: 19 LREPAQSLRRGGLVAFPTETVYGLGANALEEEAVRRIFAAKERPRDNPLIVHIADDDQLR 78 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVPCG-FT 124 ++ ++ + ++ L + FWPGPLTL+L + +HP R+P Sbjct: 79 DVIDENQPLHEDAVRLMRAFWPGPLTLLLPAGARLAPSVHP----GQPLVGVRMPDHPVA 134 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + LI G P+A PSANRSG+ S T + ++ + I ++DGG IG+EST++ ++ Sbjct: 135 RALIAEAGVPVAAPSANRSGRPSPTTPDDV-AADLDGRIDWLVDGGPCPIGVESTVLLLE 193 Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCV---DETSTPQSPGMLKSHYAPRSQVR---- 237 + RILRPGG+ E + I + Y D S P +PGM HYAP ++V Sbjct: 194 PD-CARILRPGGVTQEMIASVIDRPVLYAADVFDVASAPLAPGMKYRHYAPNARVHVWWG 252 Query: 238 -------------LRAIH---------VNPREALIRFGNVPIKNIENAIISLNLSKTGKL 275 L A+ + P + + RFG + A+ + + Sbjct: 253 EPEAIDEAMRAFLLEAVQDDDLIVPALIAPADFVRRFGWALSDERQAALPADTYA----- 307 Query: 276 KEAAFNLFNYMKIADDSGASSIAFSSI-PNHGLGIAINNRLERAAAPR 322 +E A +L+ ++ D +GA+ + + P HG+G A+ NRL +A+A R Sbjct: 308 EELARHLYRLLRAFDRAGATDVLVHGVDPTHGVGAAVMNRLYKASAGR 355 >gi|258614609|ref|ZP_05712379.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium DO] Length = 231 Score = 142 bits (357), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 85/224 (37%), Positives = 129/224 (57%), Gaps = 8/224 (3%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L++A E L G +A PTETVYGL ++ P A+++++ +K RP NPLI HV+ Sbjct: 7 DETELQEAAEALKEGELVAFPTETVYGLGANALLPNAVKKVFSVKGRPQDNPLIVHVASF 66 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 VK++ + P + + K FWPGPLTL+ + T + + T L TA FR+P T Sbjct: 67 EQVKEYVDNFHPAAEKIVKNFWPGPLTLIFKIKKDT-LPSVVTGGLSTAAFRIPDNKKTL 125 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 ++IE G PL PSAN SG+ S T H+ + +I IID G ++IG+EST++++ Sbjct: 126 EVIELSGVPLVGPSANTSGKPSPTTADHVY-HDLQGKITGIIDDGATRIGVESTVLDLSD 184 Query: 186 EKKV-RILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGM 225 + ILRPG + E ++ I + ++ V E TP++PGM Sbjct: 185 PTAMPMILRPGAVTKEQIEAVIESPVAIDQHLVKENETPKAPGM 228 >gi|39958882|ref|XP_364450.1| hypothetical protein MGG_09295 [Magnaporthe oryzae 70-15] gi|145013245|gb|EDJ97886.1| hypothetical protein MGG_09295 [Magnaporthe oryzae 70-15] Length = 461 Score = 142 bits (357), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 118/396 (29%), Positives = 175/396 (44%), Gaps = 88/396 (22%) Query: 10 NALRKACEFLDAG-LPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ALR+A ++L + +P+ PTETVYGL D+ A+R +Y K RP+ NPLI HV D+ Sbjct: 64 GALRRAADYLGSSDIPVGFPTETVYGLGADATRSAAVRGIYAAKGRPSDNPLIVHVCDLD 123 Query: 69 MVK-----------------------------------KHASVDPLS---LHLAKLFWPG 90 M++ K + DP+ L L + FWPG Sbjct: 124 MLRALLSPACDSGNGTNSQAVSEEAAEPATTANGMSNSKTSIDDPIPSIYLPLMERFWPG 183 Query: 91 PLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISIT 149 PLT++L + + P TA L T R+P LI G PLA PSAN S + S T Sbjct: 184 PLTILLPNPQPSRLAPEVTAGLPTFGARMPASPLALTLIRLAGVPLAAPSANASTRPSPT 243 Query: 150 NVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVE 209 H+L + + LI+DGG +G+EST+V+ C+ +LRPGG+ IE L+R E Sbjct: 244 TAHHVL-DDLDGRLELILDGGPCGVGVESTVVDGLCDPPA-VLRPGGVAIEDLRRCKGWE 301 Query: 210 --LEYCVDE--------TSTPQSPGMLKSHYAPRSQVRL--------------------- 238 + DE ++ P++PGM HY+PR++V L Sbjct: 302 GVVRAYKDEAELGKSGKSAAPRAPGMKYKHYSPRAKVVLYEAGFGGGAEGDRVREDLDAG 361 Query: 239 ------------RAIHVNPREALIRFGNVPIK--NIENAIISLNLSKTGKLKEAAFNLFN 284 R V R + + G ++ IE+ L+L K+ A LF+ Sbjct: 362 RLVVGEDARRPARLGVVRTRSSGDKAGERSVEEYQIEDGTTVLDLHLGRDPKDVAQGLFS 421 Query: 285 YMKIADDSGASSIAFSSIPN-HGLGIAINNRLERAA 319 ++ D A I + + + A+ NRL +AA Sbjct: 422 ALRELDTRTADVICVEGVGDGDDIAAAVMNRLRKAA 457 >gi|261252205|ref|ZP_05944778.1| YrdC family protein [Vibrio orientalis CIP 102891] gi|260935596|gb|EEX91585.1| YrdC family protein [Vibrio orientalis CIP 102891] Length = 319 Score = 142 bits (357), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 100/323 (30%), Positives = 167/323 (51%), Gaps = 17/323 (5%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 Q +S ++S + +A E L +G +AIPTETVYGLA D+ NP A+++++ K RPA +PLI Sbjct: 4 QHLSASNSKDIEQAKEILASGELVAIPTETVYGLAADASNPEAVKKIFAAKGRPANHPLI 63 Query: 62 CHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 H+ + + A+ P + +A +WPGP+TL+L+ P+ T L+T R+P Sbjct: 64 VHIGSVEQLTDWATDIPQEAYTIASAYWPGPVTLLLN--KAEQATPVVTGGLETIGVRMP 121 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 + + G +A PSAN ++S T+ +H++ +S+ +I ++DGG GLESTI Sbjct: 122 AHDVFASLLSSGMAVAAPSANPYKKLSPTSAQHVM-NSLGGKIAAVLDGGDCVHGLESTI 180 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 +++ ++ R+LR G + L + E+ + PG + SHY P ++VRL Sbjct: 181 IDL-TQRPFRVLRTGPVTATQLSETLGKEV--LAPKAHAVAVPGNVTSHYQPNTKVRL-- 235 Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKL-----KEAAFNLFNYMKIADDSGAS 295 V+ + GN I + + I +L KL + + +L+ + AD G Sbjct: 236 --VDLSDIQSANGN-NIACLHYSAIEASLGFKSKLMPQDVAQYSHDLYRALDEADKWGCD 292 Query: 296 SIAFSSIPNHGLGIAINNRLERA 318 I P A+++RL RA Sbjct: 293 EIWVERPPVSEAWFAVHDRLNRA 315 >gi|168333894|ref|ZP_02692132.1| hypothetical protein Epulo_03232 [Epulopiscium sp. 'N.t. morphotype B'] Length = 334 Score = 142 bits (357), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 108/345 (31%), Positives = 169/345 (48%), Gaps = 43/345 (12%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M + ++ ++ L A L G + PTETVYGL ++ + A+ +++ K RPA NPL Sbjct: 1 MDTIILSKTDNLELAINILKNGGLVVSPTETVYGLCANALDENAVENIFKAKGRPADNPL 60 Query: 61 ICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLST-ANLKTACFR 118 I H++ ++M+ + A + + L FWPGPLTL+ + +I P T ANL+T R Sbjct: 61 IVHIASLAMLDQLVAEISANAQKLIDAFWPGPLTLI---FKSQNIIPNKTRANLQTVAIR 117 Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 P +LI+ PLA PSAN SG+ S TN+ ++ K + IIDGG KIGLE Sbjct: 118 FPENKIIIELIKKSKLPLAAPSANTSGKPSPTNIDRVIEDLFGK-VDCIIDGGNCKIGLE 176 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVR 237 ST+V+V + RILRPG + L++ + ++ P +PGM HYAP + V Sbjct: 177 STVVDVSGD-NARILRPGFITAAMLEKIVP---SVSAPASAFPIAPGMKYKHYAPSANVA 232 Query: 238 L-----------------------RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGK 274 + RA + E + F ++P+ ++L Sbjct: 233 IVDGNDLQEIAKKICCLIKKDRHKRAGVLIVDEMISFFEDIPV---------VSLGSITN 283 Query: 275 LKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 L+ A NLF ++ DD + + + LG++I NRL +A+ Sbjct: 284 LESIASNLFEKLRQLDDLKLEQVYTIYLHDKNLGLSIMNRLLKAS 328 >gi|68471205|ref|XP_720379.1| hypothetical protein CaO19.7088 [Candida albicans SC5314] gi|77022446|ref|XP_888667.1| hypothetical protein CaO19_7088 [Candida albicans SC5314] gi|46442244|gb|EAL01535.1| hypothetical protein CaO19.7088 [Candida albicans SC5314] gi|76573480|dbj|BAE44564.1| hypothetical protein [Candida albicans] Length = 382 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 107/325 (32%), Positives = 160/325 (49%), Gaps = 37/325 (11%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK---HASVDPLSL 81 I PTETVYGLA + + +++ +Y+ K RPA NPLI H+S I +K+ + + + L Sbjct: 56 IGFPTETVYGLAGSALSDESVKSIYKAKNRPADNPLIVHISSIEQLKRKLINYEIPQVYL 115 Query: 82 HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140 L FWPGPLT++L + + I L TAN T R+P + LI P+A PSA Sbjct: 116 DLISHFWPGPLTILLPITKDSPISKLVTANQDTFAVRMPNHPVARALIAMSDTPIAAPSA 175 Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200 N S + S T +H+ + +IPLI+DGG +G+EST+++ + + +LRPGG+ +E Sbjct: 176 NASTRPSPTLAEHVY-HDLNGKIPLILDGGACNVGVESTVIDGLVDPPM-LLRPGGVSLE 233 Query: 201 TLKRAISVELEYCVDETSTP------QSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGN 254 +KR E V T ++PGM HY+P ++V L VN + + N Sbjct: 234 DIKRVGGKLWENIVVAKKTAGKLEPVKTPGMKYRHYSPTAKVVL---FVNCGDGINAIEN 290 Query: 255 VPIKNIENA-------------------IISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 N +A I L TG E + NLF Y++ D+ Sbjct: 291 YLTNNKVDASTTKIALLKSKHFGEDHPHFIIKRLGTTG--NEISHNLFKYLREVDEEDKV 348 Query: 296 SIAF-SSIPNHGLGIAINNRLERAA 319 + F I G+A+ NRL +AA Sbjct: 349 ELIFVEGIDETNEGLAVMNRLSKAA 373 >gi|238883207|gb|EEQ46845.1| protein SUA5 [Candida albicans WO-1] Length = 382 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 107/325 (32%), Positives = 160/325 (49%), Gaps = 37/325 (11%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK---HASVDPLSL 81 I PTETVYGLA + + +++ +Y+ K RPA NPLI H+S I +K+ + + + L Sbjct: 56 IGFPTETVYGLAGSALSDESVKSIYKAKNRPADNPLIVHISSIEQLKRKLINYEIPQVYL 115 Query: 82 HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140 L FWPGPLT++L + + I L TAN T R+P + LI P+A PSA Sbjct: 116 DLISHFWPGPLTILLPITKDSPISKLVTANQDTFAVRMPNHPVARALIAMSDTPIAAPSA 175 Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200 N S + S T +H+ + +IPLI+DGG +G+EST+++ + + +LRPGG+ +E Sbjct: 176 NASTRPSPTLAEHVY-HDLNGKIPLILDGGACDVGVESTVIDGLVDPPM-LLRPGGVSLE 233 Query: 201 TLKRAISVELEYCVDETSTP------QSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGN 254 +KR E V T ++PGM HY+P ++V L VN + + N Sbjct: 234 DIKRVGGKLWENIVVAKKTAGKLEPVKTPGMKYRHYSPTAKVVL---FVNCGDGINAIEN 290 Query: 255 VPIKNIENA-------------------IISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 N +A I L TG E + NLF Y++ D+ Sbjct: 291 YLTNNKVDASTTKIALLKSKHFGEDHPHFIIKRLGTTG--NEISHNLFKYLREVDEEDKV 348 Query: 296 SIAF-SSIPNHGLGIAINNRLERAA 319 + F I G+A+ NRL +AA Sbjct: 349 ELIFVEGIDETNEGLAVMNRLSKAA 373 >gi|187918590|ref|YP_001884153.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia hermsii DAH] gi|119861438|gb|AAX17233.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia hermsii DAH] Length = 336 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 107/335 (31%), Positives = 164/335 (48%), Gaps = 31/335 (9%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 I + + + KA +F+ G + PTETVYG+ ++ N A+R ++ +KKRP NPLI HV Sbjct: 7 EIIEQSEIEKAAKFIRTGELVVFPTETVYGIGANAYNDDAVRMIFLVKKRPITNPLIVHV 66 Query: 65 SDISMVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 I + + P S L L + F PGPLT +L + I L + L++ R+P Sbjct: 67 ESIEKINELVEHIPKSALILMQKFTPGPLTFILK--NAGKISNLISGGLESIAVRIPSEP 124 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI-----SKIGLE 177 KLI+ G P+A PSAN S + S TN K + KE+ ++ G I SKIG+E Sbjct: 125 VALKLIKISGVPIAAPSANLSRRPSATNFKMAI-----KELDGLVKGIIKKNEESKIGIE 179 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPR-- 233 ST++ + + ILRPG + E ++R + E EY V + +SPG L HY PR Sbjct: 180 STVIGFDLKGNISILRPGSITKEMIERELKGEFRVEYSVGKEMLSKSPGNLLEHYRPRIP 239 Query: 234 -------SQVRLRAIHVNPREALIR--FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFN 284 +R A + + + R F + N N+ L+E A N++ Sbjct: 240 VYLFKQKDNIRCYASRQDTKVLITRDTFKSYWFNGFWNM---NNICVFNTLEEYAKNIYK 296 Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 + + I + N+ LG +INNRL++A+ Sbjct: 297 VF-VESEKEYKQILAEFVDNNQLGYSINNRLKKAS 330 >gi|156062334|ref|XP_001597089.1| hypothetical protein SS1G_01283 [Sclerotinia sclerotiorum 1980] gi|154696619|gb|EDN96357.1| hypothetical protein SS1G_01283 [Sclerotinia sclerotiorum 1980 UF-70] Length = 459 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 89/248 (35%), Positives = 139/248 (56%), Gaps = 23/248 (9%) Query: 12 LRKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 + +A E+L +P+A PTETVYGL D+ A++ +Y+ K RP+ NPLI HV D++M+ Sbjct: 47 IAEAAEYLKTKSIPVAFPTETVYGLGADATRSDAVKGIYKTKGRPSDNPLIIHVCDLTML 106 Query: 71 KKHAS-------------VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 + S + + L K FWPGPLT++L S + + P TA L+T Sbjct: 107 RSLLSSTENQSSGADFPEIPEIYKPLIKCFWPGPLTILLPNPSPSKLAPEVTAGLQTFGA 166 Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P LI G PLA PSAN S + S T +H+ + I +I+DGG ++G+ Sbjct: 167 RMPSSPLALSLIRLAGVPLAAPSANASTKPSCTTAEHVY-HDLNGRIEIILDGGACQVGV 225 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVE--LEYCVDETS----TPQSPGMLKSHY 230 EST+V+ C+ V +LRPGG+ I+ ++ E ++ D++ P++PGM HY Sbjct: 226 ESTVVDGMCDPPV-VLRPGGVSIDEIRGCHGWERVVKGYKDQSEIGDKAPRAPGMKYKHY 284 Query: 231 APRSQVRL 238 +P+++V L Sbjct: 285 SPKAKVIL 292 >gi|295425484|ref|ZP_06818177.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus amylolyticus DSM 11664] gi|295064823|gb|EFG55738.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus amylolyticus DSM 11664] Length = 337 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 104/330 (31%), Positives = 162/330 (49%), Gaps = 22/330 (6%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I + A + L G +A PTETVYGL + N +++ +Y K RP+ NPLI VS Sbjct: 9 IFSEEQIDDAVKLLAKGELVAFPTETVYGLGAIATNEKSVKGVYAAKGRPSDNPLIVTVS 68 Query: 66 DISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 D M++++A P + L K FWPGPLT++L + + T L T FR P Sbjct: 69 DEDMMRRYAKEVPERAEKLIKHFWPGPLTILL-FVKPGSLPDAVTGGLDTVAFRCPDDKL 127 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 T LI+ G+P+ PSAN S + S T +H+ + +I IIDGG +++GLESTI+++ Sbjct: 128 THTLIKKLGYPIVGPSANTSTKPSPTTAQHVY-HDLKGKIAGIIDGGPTRVGLESTIIDL 186 Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 + + +LRPG + E L + ++ V + P++PGM HYAP + V + Sbjct: 187 SVKTPI-VLRPGEITPEELSEVLGEKVLINTGKVSDKEIPKAPGMKYRHYAPSAPVMV-- 243 Query: 241 IHVNPREALIRFG---NVPIKNIENAIISLNLSKTGKLK------EAAFNLFNYMKIADD 291 ++ E + N + +N + ++L + K +A NLF ++ DD Sbjct: 244 --IDHPEDFAKIDLNENTGVMATKNVLAKIDLPQENKFNLGDDLIQADHNLFGGLRYFDD 301 Query: 292 -SGASSIAFSSIPNHGLGIAINNRLERAAA 320 I +A NRL +AAA Sbjct: 302 KKNIHQIYVEGFDEGEASLAYMNRLNKAAA 331 >gi|168700740|ref|ZP_02733017.1| translation factor SUA5 [Gemmata obscuriglobus UQM 2246] Length = 331 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 103/324 (31%), Positives = 160/324 (49%), Gaps = 19/324 (5%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 +S+ + +A + +G +A PTETVYGL + + A+ ++E K RP+ NPLI HVSD Sbjct: 14 ESDVIGRAAAVVRSGGLVAFPTETVYGLGANGLSAAAVAGIFEAKGRPSTNPLILHVSDA 73 Query: 68 SMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTK 125 S V A+ P + LA FWPGPLTLV+ + + TA T R P + Sbjct: 74 SEVLNVAAAWPATAQTLAARFWPGPLTLVVP--KRDSVPNIVTAGGPTVAVRCPNHAVAR 131 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LI G PLA PSANRS ++S T +H+L + I +++DGG GLEST+V+V Sbjct: 132 ALIRAAGVPLAAPSANRSTELSPTRAEHVL-KGLNGRIAIVLDGGPCSGGLESTVVDVTG 190 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245 E R+LRPG + + L+ A+ +E ++PG + HY+PR+ + L Sbjct: 191 EIP-RVLRPGLITVPMLE-AVCGRVEVGTKSEGVARAPGQMVKHYSPRTPLVLVDRADEA 248 Query: 246 REALIRFGNVPIKNIENAIISLNLSKTG---------KLKEAAFNLFNYMKIADDSGASS 296 A + ++ + ++ +L T + + A +L+ + D+ Sbjct: 249 ERARAAASRLGLRAV---VVGFDLPLTAASMYRAMMFEPDQYAADLYAVLHELDNGRYDQ 305 Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320 I P+ A+ +RL RAAA Sbjct: 306 IVVEMPPDTPEWAAVRDRLTRAAA 329 >gi|302875885|ref|YP_003844518.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium cellulovorans 743B] gi|307689318|ref|ZP_07631764.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium cellulovorans 743B] gi|302578742|gb|ADL52754.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium cellulovorans 743B] Length = 350 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 106/335 (31%), Positives = 163/335 (48%), Gaps = 26/335 (7%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 + + LR+ E + G +A PTETVYGL ++ + A+ +++ K RP NPLI H+S + Sbjct: 14 EKDKLREVAEVIRNGGLVAFPTETVYGLGANAFDENAVEKIFIAKGRPQDNPLIVHISQL 73 Query: 68 SMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + P S L FWPGP+T +L+ T I ++A L+T R+P + Sbjct: 74 DDIFPLVKEIPSSAKMLMDNFWPGPITFILN--KETCIPYKTSAGLETIGIRMPSDPLAR 131 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LI+ G P+A PSAN SG+ S T++ + + ++ II G S++GLESTIV+ Sbjct: 132 ALIKEVGVPIAAPSANLSGKPSPTDINRCI-EDLEGKVDCIIGGSNSEVGLESTIVDCTV 190 Query: 186 EKKVRILRPGGLEIETLKR-----AISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 E +LRPG + IE +++ I L D+ P++PGM HYAP++ V + Sbjct: 191 EPPC-VLRPGAITIEMIRKIQPEAYIDPALLNKADQNFKPKAPGMKYKHYAPKASVIIIK 249 Query: 241 IHVNPREALIR--FGNVPIKNIENAIISLNLSKT-------------GKLKEAAFNLFNY 285 +N I N I+ I++ + +KT L NLF Sbjct: 250 GEINKTVEKINEIVQNYIDDGIKVGIMATDETKTYYKKGEVISLGSRSDLTSIGRNLFGV 309 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ DD G I + G+AI NRL +AA Sbjct: 310 LRTFDDLGVEYIISEAFEEKEYGLAIMNRLNKAAG 344 >gi|161507268|ref|YP_001577222.1| Sua5 family translation factor [Lactobacillus helveticus DPC 4571] gi|160348257|gb|ABX26931.1| putative translation factor, SUA5 family [Lactobacillus helveticus DPC 4571] Length = 333 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 107/334 (32%), Positives = 161/334 (48%), Gaps = 30/334 (8%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I + + +A + L G +A PTETVYGL + +++ +Y K RP+ NPLI VS Sbjct: 5 IFKKDQIDEAVKLLAEGELVAFPTETVYGLGAIATKEKSVKGVYAAKGRPSDNPLIVTVS 64 Query: 66 DISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 D M++++A P + L K FWPGPLTL+L + + T L T FR P Sbjct: 65 DEKMMERYAKEVPERAKKLIKHFWPGPLTLLL-FVKPGTLPDAVTGGLDTVAFRCPDDQL 123 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 T LI G+P+ PSAN S + S T +H+ + +I IIDGG +++GLESTI+++ Sbjct: 124 THDLIAKLGYPIVGPSANTSTKPSPTTAEHVY-HDLKDKIAGIIDGGPTRVGLESTIIDL 182 Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQV---- 236 + + +LRPG + E L + ++ V + P++PGM HYAP V Sbjct: 183 SVKTPI-VLRPGEITPEELSEVLGEKVLINTGKVADKDVPKAPGMKYRHYAPSEPVVVVD 241 Query: 237 ---RLRAIHVNPREALIRFG------NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMK 287 I N + ++ G N+P +N +L K L +A NLF ++ Sbjct: 242 DPADFGKIDFNDKTGVVALGSVLDQINLPEEN------KFDLGKN--LIDADHNLFGALR 293 Query: 288 IADD-SGASSIAFSSIPNHGLGIAINNRLERAAA 320 DD +I +A NRL +AA Sbjct: 294 YFDDKDDIETIYVQGFDEGEESLAYMNRLNKAAG 327 >gi|220927715|ref|YP_002504624.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium cellulolyticum H10] gi|219998043|gb|ACL74644.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium cellulolyticum H10] Length = 359 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 108/339 (31%), Positives = 176/339 (51%), Gaps = 33/339 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 + NAL+ A E L G+ +A PTETVYGL ++ + A+ ++++ K RP+ NPLI H++D Sbjct: 14 NENALKPAAEALKQGMTVAFPTETVYGLGANALDGIAVSKIFKAKGRPSDNPLIVHIADR 73 Query: 68 SMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 V + S P ++ L WPGPLTLV+ S I TA L T R+P Sbjct: 74 EKVSELTSFIPDKAVALMDKLWPGPLTLVMKKSSV--IPKEITAGLDTVGIRMPEHPVAL 131 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +LI+ G P+A PSAN SG+ S T +H+L + +I +I+D G S++GLEST+++V Sbjct: 132 ELIKLAGIPVAAPSANVSGKPSPTAAQHVL-DDLDGKIEMIVDAGSSRVGLESTVLDVSS 190 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDET--------STPQSPGMLKSHYAPRSQVR 237 + V +LRPGG+ T + + +D+T + P+SPGM HY+P++ V Sbjct: 191 DPPV-LLRPGGV---TPCQIEEIIGHIEIDKTIMNKVTADNVPKSPGMKYKHYSPKAHVI 246 Query: 238 L-RAIHVNPREALIRF---------GNVPIKNIENAIISLNLSKTGKLKE------AAFN 281 + + +N + ++ + V + + L T + + A + Sbjct: 247 IVESSDINKQAEVMCYLAEKYKKEGKKVGVCATDQTFDKYCLYDTISMGDRNHPETIASS 306 Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 LF+ + D A I ++ +G+G+AI NR+ +AA Sbjct: 307 LFSIFREFDGRRADIILAEAVDQNGVGLAIMNRMVKAAG 345 >gi|322699100|gb|EFY90864.1| translation initiation protein Sua5 [Metarhizium acridum CQMa 102] Length = 437 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 89/255 (34%), Positives = 137/255 (53%), Gaps = 17/255 (6%) Query: 12 LRKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 L A E+L P+A PTETVYGL D+ +++ +Y K RP+ NPLI HV D+ M+ Sbjct: 43 LEPAAEYLRTKDTPVAFPTETVYGLGADATRSASVKGIYSAKGRPSDNPLIVHVCDLDML 102 Query: 71 KK------HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 + ++ L K FWPGPLT++L + + P TA L T R+P Sbjct: 103 RTLLGSRGEDAIPARYQSLMKRFWPGPLTILLPNPDPSPLAPEVTAGLATFGVRMPSSPL 162 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 LI+ G PLA PSAN S + S T +H+ + I +I+DGG ++G+EST+V+ Sbjct: 163 ALTLIKLAGVPLAAPSANASTKPSPTMAQHV-KDDLDGRIEMILDGGSCRVGVESTVVDG 221 Query: 184 QCEKKVRILRPGGLEIETLKRAISVE------LEYCVDETSTPQSPGMLKSHYAPRSQVR 237 C+ +LRPGG+ I+ L+ E + + + P++PGM HY+PR++V Sbjct: 222 LCDPPA-VLRPGGVAIDELRSCPGWEDVVKAYKDQSEEGKAAPRAPGMKYKHYSPRARVV 280 Query: 238 L-RAIHVNPREALIR 251 L + + N R +++ Sbjct: 281 LYESSYENGRAGIVK 295 >gi|310829674|ref|YP_003962031.1| Sua5/YciO/YrdC/YwlC family protein [Eubacterium limosum KIST612] gi|308741408|gb|ADO39068.1| Sua5/YciO/YrdC/YwlC family protein [Eubacterium limosum KIST612] Length = 345 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 104/329 (31%), Positives = 167/329 (50%), Gaps = 25/329 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L KA E + G + PTETVYGL ++ + +A+++++E K RPA NPLI H++D ++ Sbjct: 18 LTKAGELIARGETVVFPTETVYGLGANALDESAVKKIFEAKGRPADNPLIVHIADRDDLE 77 Query: 72 KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-KLIE 129 K + P L FWPGPLTL++ ++ + + TA L T R P LI+ Sbjct: 78 KLVTEVPEKAEKLMDAFWPGPLTLIMH--KSSGVPEVVTAGLDTVAVRFPSNLIALGLIK 135 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 + G P+A PSAN SG+ S T +H++ + + + II + +GLEST+V+ E Sbjct: 136 SAGVPIAAPSANISGRPSPTKSEHVIEDMMGR-VSAIIVSEDTDVGLESTVVDTTTEPPT 194 Query: 190 RILRPGGLEIETLKRAIS-VELEYCVDETSTPQ---SPGMLKSHYAPRSQV--------- 236 +LRPGG+ + L+ I V++ E P+ SPGM +HY+P+ + Sbjct: 195 -VLRPGGVTVAELEAVIGRVQVSPNAIENVIPEKAKSPGMKYTHYSPKGDLVIVKGTDAE 253 Query: 237 RLRAI--HVNPREAL---IRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291 ++ I H+ E + I + + N + II ++L +E + NLF ++ DD Sbjct: 254 KVEKINRHIKKHEEMQIGILATDETMGNYHSGII-ISLGSRENPEEMSHNLFARLRTFDD 312 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320 G I I +A+ NRL +A Sbjct: 313 LGIEKIYAEDIEVGNDTLALANRLYKAGG 341 >gi|307265643|ref|ZP_07547196.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter wiegelii Rt8.B1] gi|326389253|ref|ZP_08210821.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter ethanolicus JW 200] gi|306919287|gb|EFN49508.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter wiegelii Rt8.B1] gi|325994616|gb|EGD53040.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter ethanolicus JW 200] Length = 354 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 106/329 (32%), Positives = 163/329 (49%), Gaps = 28/329 (8%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A + G +A PTETVYG+ +S N A+++++ K RP NPLI H++++ + Sbjct: 20 AANVIREGGLVAFPTETVYGIGANSFNEEAVKKIFIAKGRPQDNPLIVHIAELKQIYDLV 79 Query: 75 SVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132 P L K FWPGPLTL+ + + ++TA + T R+P LI+ Sbjct: 80 EDVPQKAKTLMKKFWPGPLTLIFK--KSEKVPYVNTAGMDTVAIRMPSNPIAHLLIKRAE 137 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192 P++ PSAN SG+ S T+ H++ K + +IIDGG +G+EST++++ EK IL Sbjct: 138 VPISAPSANVSGKPSPTDASHVIEDLYGK-VDVIIDGGKCDVGVESTVLDL-TEKVPVIL 195 Query: 193 RPGGLEIETLKRAI-SVELEYCV----DETSTPQSPGMLKSHYAPRSQVRL--------- 238 RPG + +E LK I +VE++ + E P+SPGM HY+P ++V + Sbjct: 196 RPGAVTLEMLKEVIGNVEVDPSLLKKPKEDLKPKSPGMKYKHYSPNAEVYIVTGDLEKVV 255 Query: 239 RAIHVNPREALIRFGNVPI-------KNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291 + I E L V I E I + + + + A NLF ++ D Sbjct: 256 KKIQELTEEQLKYGKKVGIMATVQTSTQYEKGEI-IVVGDRNRPETIAKNLFAVLRQFDK 314 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320 G I S +G+AI NRLE+AA Sbjct: 315 KGVDVIFAESFEYDNIGLAIMNRLEKAAG 343 >gi|303390839|ref|XP_003073650.1| translation factor [Encephalitozoon intestinalis ATCC 50506] gi|303302797|gb|ADM12290.1| translation factor [Encephalitozoon intestinalis ATCC 50506] Length = 332 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 83/214 (38%), Positives = 124/214 (57%), Gaps = 12/214 (5%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 + +PTETVYGLA + N A+ R++ +K RPA NPLI +S + M+++ P+ L Sbjct: 22 VVVPTETVYGLAANIWNLRAVERIFALKGRPANNPLIAGISSVQMLEEIVE-GPIPLQYK 80 Query: 85 KL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140 KL FWPGPLTL+ S ++ P+ L T R+P K+IE G PL IPSA Sbjct: 81 KLIENFWPGPLTLLFK--SKDNVSPIVRGGLNTIAVRMPGSKLLLKIIERLGAPLVIPSA 138 Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200 N SG+ S T ++H++ E+ L+IDGG S IG+ESTIV + ++++LRPGG+ +E Sbjct: 139 NISGRPSPTTIEHVI-EDFGDEVKLMIDGGPSSIGVESTIVQ-YVDGRLQVLRPGGITVE 196 Query: 201 TLKRAISVELEYCVDETSTPQSPGMLKSHYAPRS 234 +K + E+ +E + HY+P+S Sbjct: 197 RIKDVVDCEVIVKKNEWGGKEKR---HKHYSPKS 227 >gi|227892678|ref|ZP_04010483.1| Sua5 family translation factor [Lactobacillus ultunensis DSM 16047] gi|227865549|gb|EEJ72970.1| Sua5 family translation factor [Lactobacillus ultunensis DSM 16047] Length = 339 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 108/334 (32%), Positives = 162/334 (48%), Gaps = 30/334 (8%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I + L +A + L G +A PTETVYGL + N +++ +Y K RP+ NPLI VS Sbjct: 11 IFKKDQLDEAVKLLAKGELVAFPTETVYGLGAIATNEKSVKGVYAAKGRPSDNPLIVTVS 70 Query: 66 DISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 M++++A P + L K FWPGPLTL+L + + T L T FR P Sbjct: 71 GEKMMERYAKEVPERAKKLIKHFWPGPLTLLL-FVKPGTLPDAVTGGLDTVAFRCPDDQL 129 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 T LI G+P+ PSAN S + S T +H+ + +I IIDGG +++GLESTI+++ Sbjct: 130 THDLIAKLGYPIVGPSANTSTKPSPTTAQHVY-HDLKGKIAGIIDGGPTRVGLESTIIDL 188 Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQV---- 236 + + +LRPG + E L + ++ V + P++PGM HYAP V Sbjct: 189 SVKTPI-VLRPGEITPEELSEVLGEKVLINTGKVADKDVPKAPGMKYRHYAPSEPVIVVD 247 Query: 237 ---RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGK------LKEAAFNLFNYMK 287 I+ N + + G+V + ++L K K L +A NLF ++ Sbjct: 248 DPADFSKINFNEKTGVAALGSV--------LAKIDLPKENKFDLGNNLVDADHNLFGGLR 299 Query: 288 IADDSGASSIAFSSIPNHG-LGIAINNRLERAAA 320 DD + N G +A NRL +AA Sbjct: 300 YFDDMDNIETIYVQGFNEGEESLAYMNRLNKAAG 333 >gi|56475496|ref|YP_157085.1| putative translation factor (SUA5) [Aromatoleum aromaticum EbN1] gi|56311539|emb|CAI06184.1| putative translation factor (SUA5) [Aromatoleum aromaticum EbN1] Length = 351 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 106/342 (30%), Positives = 167/342 (48%), Gaps = 40/342 (11%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 N +R+A L AG + +PTETVYGLA D+ N A+ +++ K RPA +PLI H+ D Sbjct: 12 DNEIRRAAGLLHAGELVGMPTETVYGLAADALNVAAVGKIFAAKGRPADHPLIVHLPDAG 71 Query: 69 MVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + + A P + LA+ FWPGPLTL+L + + T T RVP Sbjct: 72 HLARWAREIPDDAFALARAFWPGPLTLILKRQHS--VPDALTGGQDTVGLRVPDHPVALA 129 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L++T+ +A PSANR G+IS T +H+ + +I LI+DGG +G+ESTI+++ + Sbjct: 130 LLQTFDSGIAAPSANRFGRISPTTAEHV-RQELGDKIALILDGGPCVVGIESTILDLSRD 188 Query: 187 KKVRILRPGGLEIETLKRAISV---------------ELEYCVDETSTPQSPGMLKSHYA 231 +ILRPG + E + R I + P+ G L +HYA Sbjct: 189 TP-QILRPGAISAEDIARVIGCPPRSRPIPTGEASAGDHRDGATGDGEPRVSGSLSAHYA 247 Query: 232 PRSQVRLRAIH-----------VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAF 280 PR+ +++ A R A++ +G ++ ++A + + + L A + Sbjct: 248 PRTPLQMTAASQLAELAATLAAEGSRVAVLAYG---CQDPQDARL---IWRAAPLDAAGY 301 Query: 281 --NLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 L+ ++ D GA I + P A+N+RL RAAA Sbjct: 302 AHALYANLRDLDACGADFIVVETPPATPDWQAVNDRLRRAAA 343 >gi|302384783|ref|YP_003820605.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium saccharolyticum WM1] gi|302195411|gb|ADL02982.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium saccharolyticum WM1] Length = 353 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 109/338 (32%), Positives = 162/338 (47%), Gaps = 30/338 (8%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 ++ L K + + G +A PTETVYGL ++ N A ++Y K RP+ NPLI H+ D Sbjct: 15 EAELLIKPADIIRKGGLVAFPTETVYGLGGNALNEEAAGKIYAAKGRPSDNPLIAHIGDF 74 Query: 68 SMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCG-FT 124 + S P L K FWPGPLTL+ + + P +T L T R+P Sbjct: 75 DDLPPLVSAIPEAGKKLMKAFWPGPLTLI---FPKSGLVPYGTTGGLDTVAVRMPVDPVA 131 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + LI G P+A PSAN SG+ S T H+ + +I +I+DGG IG+ESTI++V Sbjct: 132 RALIRLAGVPVAAPSANTSGRPSPTTADHVW-QDMNGKIDMIVDGGAVGIGVESTIIDVS 190 Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYC-------VDETSTPQSPGMLKSHYAPRSQVR 237 + V ILRPG + E + +E+ + P++PGM HYAP++++ Sbjct: 191 GDGPV-ILRPGAITQEMASAVLGIEVPLDPAIVSGPLKADVRPKAPGMKYKHYAPKAELT 249 Query: 238 L---------RAIHVNPREALIRFGNVPI------KNIENAIISLNLSKTGKLKEAAFNL 282 L I+ E L + V I K +A + ++ + + A NL Sbjct: 250 LVEGDAEAVIETINRLAEEKLTQGLRVGIICTEETKEAYHAGVVRSMGIRTREETIAHNL 309 Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + ++ DD A I S + LG AI NRL +AA Sbjct: 310 YGVLREFDDLEADVIFSESFSRNHLGQAIMNRLTKAAG 347 >gi|154482619|ref|ZP_02025067.1| hypothetical protein EUBVEN_00286 [Eubacterium ventriosum ATCC 27560] gi|149736519|gb|EDM52405.1| hypothetical protein EUBVEN_00286 [Eubacterium ventriosum ATCC 27560] Length = 359 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 105/340 (30%), Positives = 161/340 (47%), Gaps = 31/340 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + + +A E + G +A PTETVYGL D+ N A ++Y K RP+ NPLI H++D+ Sbjct: 18 DMDTINQAGEIIRQGGLVAFPTETVYGLGADALNEEAAAKIYAAKGRPSDNPLIAHIADL 77 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 M+K + P++ L FWPGP+TL+ + + + +T L T R P + Sbjct: 78 EMLKPLVEEIPPVAEKLMDAFWPGPMTLIFN--KSNLVPKGTTGGLDTVAVRYPNHPIAQ 135 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LI+ G +A PSAN SG+ S T +H++ + I +IIDGG+ +GLESTI++V Sbjct: 136 ALIKAAGVSIAAPSANLSGKPSPTLGEHVI-DDMDGRIDMIIDGGMVGMGLESTIIDVTV 194 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETS-----TPQSPGMLKSHYAPRSQVRL-R 239 + ILRPG + E +K + E T P++PGM HYAP + + + Sbjct: 195 NPPM-ILRPGFITYEMVKEIVPDATEDRTIFTKPTKEFKPKAPGMKYRHYAPSADYTIYK 253 Query: 240 AIHVNPREALIRFGNVPIKN-------------------IENAIISLNLSKTGKLKEAAF 280 V E +I N + +I ++L K + A Sbjct: 254 GDEVKVAEKIIELANEKADEGKITGIITADQHLHMYQGRLNKSIKVVSLGDLEKPETVAN 313 Query: 281 NLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 +LF ++ D I + +G AI NRL +AA Sbjct: 314 HLFKALRDFDKVDTEFIFGEAFSEKNVGQAIMNRLTKAAG 353 >gi|229515463|ref|ZP_04404922.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae TMA 21] gi|229347232|gb|EEO12192.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae TMA 21] Length = 328 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 107/330 (32%), Positives = 171/330 (51%), Gaps = 23/330 (6%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 Q+ ++T ++ + A + L G +AIPTETVYGLA D+ P A+++++ K RPA +PL Sbjct: 12 QQLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPL 70 Query: 61 ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I H+ + + A+ + P + LA+ FWPGPLTL+L + P+ T L++ RV Sbjct: 71 IVHLGSAEQLSEWATDIAPEAYQLAEAFWPGPLTLLLP--KAKQVSPVVTGGLESVGIRV 128 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P +++T+ +A PSAN ++S T+ + +L + + ++DGG + GLES Sbjct: 129 PAHPVLLDILKTHRLAVAAPSANPYKKLSPTSAQQVL-DGLNGRLAAVLDGGECQHGLES 187 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVE-LEYCVDETSTPQSPGMLKSHYAPRSQVR 237 TIV++ K R+LR G + L + E L+ V + + PG + SHY P++ R Sbjct: 188 TIVDL-TSKPFRVLRAGPITASELSAVLGQEVLQPQVHQVAV---PGNVDSHYQPKT--R 241 Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLK-----EAAFNLFNYMKIA--D 290 LR I V E L GN+ I + + L S+ LK A+ Y +A D Sbjct: 242 LRVIDVLENE-LATAGNIKIALLH--LSELQASEQRLLKPMPQDAKAYGQALYRSLAEVD 298 Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAA 320 G I P +A+++RL RAA+ Sbjct: 299 KWGVDEIWLERPPQGEAWLAVHDRLRRAAS 328 >gi|164688897|ref|ZP_02212925.1| hypothetical protein CLOBAR_02545 [Clostridium bartlettii DSM 16795] gi|164602101|gb|EDQ95566.1| hypothetical protein CLOBAR_02545 [Clostridium bartlettii DSM 16795] Length = 346 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 109/336 (32%), Positives = 173/336 (51%), Gaps = 28/336 (8%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D ++K E L AG + PTETVYGL ++ + A+ ++Y+ K RP+ NPLI H+ D Sbjct: 14 DMEEIKKQAEILRAGETVIFPTETVYGLGANALDEEAVSKIYKAKGRPSDNPLIVHIGDK 73 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA-NLKTACFRVPCG-FT 124 V SV + + FWPGP+T++L+ DI P T+ L T R+P Sbjct: 74 KQVYNLVQSVTKEAEIVMDKFWPGPITIILN---KKDIIPKRTSGGLDTVAIRMPSNKIA 130 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 LI+ P+A PSAN SG+ S T KH+ + + II G GLEST++++ Sbjct: 131 NALIKEANIPIAAPSANISGRPSPTRAKHVY-EEMNHRVSGIIMGNDCVYGLESTVLDLT 189 Query: 185 CEKKVRILRPGGLEIETLKRAI-SVELEYCVDETST---PQSPGMLKSHYAPRSQVRLRA 240 E ILRPG + E L++ + +V+L+ +++ ++PGM +HY+P ++V + + Sbjct: 190 GEIPT-ILRPGSITKEQLEKELGNVQLDAALEKKEDNIKAKAPGMKYTHYSPNAEVYIVS 248 Query: 241 IH----VNPREALIRFGNVPIKNIENAIISLNLSKT---GK-------LKEAAFNLFNYM 286 ++ LI N KN++ +I L ++ GK L++ A NLF+ + Sbjct: 249 GEQTNVIDKINTLIEENND--KNLKTCVICLKCNEKQYIGKTICLGETLEDVASNLFDAL 306 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 AD+ I S N G+G AI NRL ++A + Sbjct: 307 IQADEEKCDIIYSESFTNEGIGCAIMNRLLKSAGYK 342 >gi|119356333|ref|YP_910977.1| translation factor SUA5 [Chlorobium phaeobacteroides DSM 266] gi|119353682|gb|ABL64553.1| translation factor SUA5 [Chlorobium phaeobacteroides DSM 266] Length = 323 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 112/326 (34%), Positives = 173/326 (53%), Gaps = 18/326 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 MQ + +TDS +A ++ G +A PTETVYGL P A+++L+ K RP NPL Sbjct: 1 MQTL-LTDSP--EEAARIINQGNIVAFPTETVYGLGAAICFPEAVKKLFLAKGRPTDNPL 57 Query: 61 ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I H+ + + K AS + P + L + F+PGPLTLVL +T + TA L T R Sbjct: 58 IVHIHNAGEMSKVASEISPEATLLIEHFFPGPLTLVLKKKAT--VPDAVTAGLDTVGVRC 115 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P + + P+A PSAN SG+ S T + + + +IP I+ G S +GLES Sbjct: 116 PENQIARAFLRHCCAPVAAPSANLSGKPSSTTWEAVF-HDLNGKIPCILRGEPSIVGLES 174 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKR---AISVELEYCVDETSTPQSPGMLKSHYAPRSQ 235 TIV+ E + +LR G + +E L+R A+ DE P+SPG+ HYAP++ Sbjct: 175 TIVDCS-EHEPILLREGAVTLEELQRILPAMKARKTGMKDE--KPKSPGLKYPHYAPKAA 231 Query: 236 VRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 +RL P E+ + + + N I +++ ++ ++E A +LF++ + D G S Sbjct: 232 IRLCRRGERPPESTLSSAYIGLSNPPEGIRMVSICQS--IEEYARSLFSFFRACDREGIS 289 Query: 296 SIAFSSIPNH-GLGIAINNRLERAAA 320 I + +P GLG AI++RL RA+ Sbjct: 290 VI-YCELPEQKGLGRAIHDRLMRASG 314 >gi|167629001|ref|YP_001679500.1| sua5/ycio/yrdc/ywlc family protein [Heliobacterium modesticaldum Ice1] gi|167591741|gb|ABZ83489.1| sua5/ycio/yrdc/ywlc family protein [Heliobacterium modesticaldum Ice1] Length = 422 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 124/406 (30%), Positives = 172/406 (42%), Gaps = 99/406 (24%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + LR+A L AG +A PTETVYGL D+ A+ ++ K RP+ NPLI H++D Sbjct: 20 AEGLREAAACLQAGGLVAFPTETVYGLGADALQAEAVAAIFTAKGRPSDNPLIVHIADRD 79 Query: 69 MVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 V + P L+ LA+ FWPGPLTLVL ++ I + TA L T R+P + Sbjct: 80 DVARLTVGFPALARRLAERFWPGPLTLVLP--ASPQIPAVVTAGLATVAVRMPSHPVARA 137 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LI G P+A PSANRSG+ S T H+ + I I+DGG +GLEST+V+ + Sbjct: 138 LIGEAGTPVAAPSANRSGRPSPTTAAHVW-EDLGGRIDGIVDGGDCDLGLESTVVDATGD 196 Query: 187 KKVRILRPGGLE---IETL----KRAISVEL----------------------------- 210 V ILRPGG+ IE L + A + E Sbjct: 197 VAV-ILRPGGVTREMIEALGLPVRTAFAAERLGEGTGAVAGTDAVAGTDAVAGTDAVAGT 255 Query: 211 -----------EYCVDETSTPQ---------SPGMLKSHYAPRSQVRL------------ 238 +C D P SPGM HYAPR+ + L Sbjct: 256 DAVAGTNEAAEAFCCDGDVEPGGGAGDFVPPSPGMKYVHYAPRAPLYLLDGGWEGQVEAL 315 Query: 239 ---------RAIHVNPREALI-------------RFGNVPIKNIENAIISLNLSKTGKLK 276 R P LI + G+ + E ++ L S+ L Sbjct: 316 RRLLSPSAERGDDAGPTGLLISEDTYRRIEPMLQQCGDA--GHGEKWVVRLTGSRE-DLA 372 Query: 277 EAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 A LF ++ D + + I + P+ G+G A+ NRLE+AA R Sbjct: 373 TVARRLFGAIRAFDQTTVARIVAETYPHRGIGSALMNRLEKAAGGR 418 >gi|325967731|ref|YP_004243923.1| Sua5/YciO/YrdC/YwlC family protein [Vulcanisaeta moutnovskia 768-28] gi|323706934|gb|ADY00421.1| Sua5/YciO/YrdC/YwlC family protein [Vulcanisaeta moutnovskia 768-28] Length = 375 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 114/348 (32%), Positives = 174/348 (50%), Gaps = 43/348 (12%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D++ +++A ++ G +A PTETVYGL D+ N A +++ K RP NPLI H+SDI Sbjct: 28 DNSIIKEASNYIRNGYLVAFPTETVYGLGADTFNGEACLKIFRAKGRPPDNPLIVHISDI 87 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + + K A + + + + WPGPLTL+L + DI T T R P Sbjct: 88 NELDKVAIDIPEIIFPVIRKAWPGPLTLILP--KSPDIPKEVTGGRNTVAVRSPAHPVAL 145 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLI-IDGGISKIGLESTIVNVQ 184 LI++ G P+A PSAN+SG+ S T +HI+ +I +I +D G + G+ESTI++V Sbjct: 146 ALIKSSGTPIAAPSANKSGRPSPTLAEHIIEDYANDDIEMILLDAGPTFFGVESTIIDVT 205 Query: 185 CEKKVRILRPGGLEIETLKRAISVEL---EYC--VDETSTPQSPGMLKSHYAPRSQVRLR 239 V +LRPG IE LK +V++ E+ + E T +PGM HYAP + RL Sbjct: 206 RNPPV-LLRPGPFTIEELKSLFNVDIVVPEFARGLGEADTALAPGMRYRHYAPHT--RLI 262 Query: 240 AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD--------D 291 + N ++LI+ + + + N + + L T KE A L Y +I + Sbjct: 263 IVECNDHDSLIKLLHDTLIDYLNKKLKVALLIT---KETANQLMKYPEINELPIIILGYR 319 Query: 292 SGASSIA---FSSIPN----------------HGLGIAINNRLERAAA 320 +IA F S+ N G+G+AI NRL +A+ Sbjct: 320 ENTYTIAASLFDSLRNLDKINVDIGIAEGIEERGIGLAIMNRLRKASG 367 >gi|260587375|ref|ZP_05853288.1| Sua5/YciO/YrdC/YwlC family protein [Blautia hansenii DSM 20583] gi|331083675|ref|ZP_08332786.1| hypothetical protein HMPREF0992_01710 [Lachnospiraceae bacterium 6_1_63FAA] gi|260542242|gb|EEX22811.1| Sua5/YciO/YrdC/YwlC family protein [Blautia hansenii DSM 20583] gi|330403886|gb|EGG83438.1| hypothetical protein HMPREF0992_01710 [Lachnospiraceae bacterium 6_1_63FAA] Length = 349 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 108/334 (32%), Positives = 168/334 (50%), Gaps = 25/334 (7%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D +++A E L G +A PTETVYGL D N + ++Y K RP+ NPLI H++D+ Sbjct: 14 DLQIMKEAGEILKNGGLVAFPTETVYGLGGDGLNARSSEKIYTAKGRPSDNPLIIHIADM 73 Query: 68 SMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + K P LA+ FWPGPLT++ ++++ +T L++ R+P Sbjct: 74 ESLNKIVRQIPEKAKLLAEKFWPGPLTMIFQ--KSSEVPYETTGGLESVAVRMPNHPVAL 131 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LI+ G +A PSAN SG+ S T +H+ + + I +I+DGG IGLESTIV+ Sbjct: 132 ALIQAGGGYIAAPSANTSGRPSPTKAEHV-AEDLSGRIDMIVDGGDVGIGLESTIVDF-T 189 Query: 186 EKKVRILRPGGLEIETLKRAI-SVELEYCV---DETSTPQSPGMLKSHYAPRSQVRL--- 238 E ILRPG + ++ I SV ++ + DE P++PGM HYAP++Q+ + Sbjct: 190 ENIPVILRPGYINQAMIEAVIGSVRMDKGLLISDEKVKPKAPGMKYRHYAPKAQLVIVQG 249 Query: 239 ----RAIHVNPR-EALIRFGNV-------PIKNIENAIISLNLSKTGKLKEAAFNLFNYM 286 H+N EAL + G K++ A + ++ + A +LF + Sbjct: 250 NTNKVTAHINQICEALQQEGKKVGVIATDETKDLYQANVVKSIGTREDEEGIARHLFGIL 309 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + D+ I + +G AI NRL +AA Sbjct: 310 REFDEEDVDCIYSEAFDTPKIGQAIMNRLLKAAG 343 >gi|328468717|gb|EGF39699.1| Sua5 family translation factor [Lactobacillus helveticus MTCC 5463] Length = 333 Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 107/334 (32%), Positives = 160/334 (47%), Gaps = 30/334 (8%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I + + +A + L G +A PTETVYGL + +++ +Y K RP+ NPLI VS Sbjct: 5 IFKKDQIDEAVKLLAEGELVAFPTETVYGLGAIATKEKSVKGVYAAKGRPSDNPLIVTVS 64 Query: 66 DISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 D M++++A P + L K FWPGPLTL+L + + T L T FR P Sbjct: 65 DEKMMERYAKEVPERAKKLIKHFWPGPLTLLL-FVKPGTLPDAVTGGLDTVAFRCPDDQL 123 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 T LI G+P+ PSAN S + S T +H+ + +I IIDGG +++GLESTI+++ Sbjct: 124 THDLIAKLGYPIVGPSANTSTKPSPTTAEHVY-HDLKDKIAGIIDGGPTRVGLESTIIDL 182 Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQV---- 236 + + +LRPG + E L + ++ V + P++PGM HYAP V Sbjct: 183 SVKTPI-VLRPGEITPEELSEVLGEKVLINTGKVADKDVPKAPGMKYRHYAPSEPVVVVD 241 Query: 237 ---RLRAIHVNPREALIRFG------NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMK 287 I N + + G N+P +N +L K L +A NLF ++ Sbjct: 242 DPADFGKIDFNDKTGVAALGSVLDQINLPEEN------KFDLGKN--LIDADHNLFGALR 293 Query: 288 IADDSGA-SSIAFSSIPNHGLGIAINNRLERAAA 320 DD +I +A NRL +AA Sbjct: 294 YFDDKDDIETIYVQGFDEGEESLAYMNRLNKAAG 327 >gi|115443354|ref|XP_001218484.1| protein SUA5 [Aspergillus terreus NIH2624] gi|114188353|gb|EAU30053.1| protein SUA5 [Aspergillus terreus NIH2624] Length = 434 Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 88/242 (36%), Positives = 135/242 (55%), Gaps = 25/242 (10%) Query: 20 DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK------- 72 D+ +P+A PTETVYGL D+ +A++ +Y+ K+RP+ NPLI HV +SM+++ Sbjct: 52 DSDIPVAFPTETVYGLGADATRSSAVQGIYKAKQRPSDNPLIIHVDSLSMLERLLNPVQM 111 Query: 73 ---------HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 S+ P+ L + FWPGPLT++L S + + T+NL T R+P Sbjct: 112 SPTRATKTARNSIPPIYHPLIERFWPGPLTILLPNPSGSLLADEVTSNLTTFGVRMPASP 171 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 + LI PLA PSAN S + S T +H+ + I LI+DGG +G+EST+V+ Sbjct: 172 LARLLIHVADRPLAAPSANASTKPSPTTAEHVY-HDLQGRIELILDGGPCGVGVESTVVD 230 Query: 183 VQCEKKVRILRPGGLEIETLKRAI---SVELEY---CVDETSTPQSPGMLKSHYAPRSQV 236 + ILRPGG+ IE L+ +V++ Y +D P++PGM HY+P+++V Sbjct: 231 GLSDPPA-ILRPGGIGIEELRSCAGWENVQVGYHDGTLDVKEVPRAPGMKYRHYSPKARV 289 Query: 237 RL 238 L Sbjct: 290 VL 291 >gi|255283090|ref|ZP_05347645.1| Sua5/YciO/YrdC/YwlC family protein [Bryantella formatexigens DSM 14469] gi|255266392|gb|EET59597.1| Sua5/YciO/YrdC/YwlC family protein [Bryantella formatexigens DSM 14469] Length = 348 Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 112/344 (32%), Positives = 173/344 (50%), Gaps = 45/344 (13%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D A+ +A L AG +A PTETVYGL ++ + TA ++Y K RP+ NPLI H++ + Sbjct: 13 DEAAIAQAGRILQAGGLVAFPTETVYGLGANALDETASGKIYRAKGRPSDNPLIVHIARM 72 Query: 68 SMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCG-FT 124 + + A+V P LA+ FWPGPLT++ D P +T L+T R+P Sbjct: 73 EDLYRIAAVVPEKAERLAEKFWPGPLTMI---FPKKDCVPYTTTGGLETVAVRMPEHPVA 129 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 LI+ G +A PSAN SG+ S T +H+ + + +I +IIDGG IG+ESTIV++ Sbjct: 130 LALIKAGGGFVAAPSANSSGRPSPTRAQHV-AEDMTGKIEMIIDGGSVGIGVESTIVDMS 188 Query: 185 CEKKVRILRPGGLEIETLKRAIS-VELEYCV---DETSTPQSPGMLKSHYAPRSQ---VR 237 + + ILRPG + E L+ I V + + D T+ P++PGM HYAP++ V Sbjct: 189 GDVPM-ILRPGYINREMLEETIGEVGTDPAISGEDTTARPKAPGMKYRHYAPKADMLIVE 247 Query: 238 LRAIHVNPR-----EALIRFGNVP----------------IKNIENAIISLNLSKTGKLK 276 V R E ++ G +P +++I + + L++S+ Sbjct: 248 GEEARVVSRINELVEKELKEGRMPGIIASEETKDRYVGGIVRSIGSRMDELSISR----- 302 Query: 277 EAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 +LF ++ D S I + +G AI NRL +AA Sbjct: 303 ----HLFGVLREFDSQNVSRIYSEAFDTPVMGQAIMNRLLKAAG 342 >gi|332796229|ref|YP_004457729.1| Sua5/YciO/YrdC/YwlC family protein [Acidianus hospitalis W1] gi|332693964|gb|AEE93431.1| Sua5/YciO/YrdC/YwlC family protein [Acidianus hospitalis W1] Length = 351 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 105/327 (32%), Positives = 166/327 (50%), Gaps = 22/327 (6%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + +R+A +++ G +A PTETVYGL D+ NP A ++++ K RP NPLI H++D++ Sbjct: 15 DKIREAAKYIKLGGIVAFPTETVYGLGGDAYNPEAAIKVFKAKNRPMDNPLIVHIADLNQ 74 Query: 70 VKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + A P + L +A+ WPGPLT +L T + +T L T R+P +L Sbjct: 75 LFDVAKDIPDIVLDMAQKVWPGPLTFILK--KTDKVPKETTGGLDTVAVRMPAHPIALQL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I G P+A PSAN + + S T +H++ + + ++ +IIDGG + G+ESTI+N+ Sbjct: 133 IRESGVPIAAPSANLATKPSPTKAEHVI-ADLNGKVDVIIDGGDTFFGVESTIINMTVNP 191 Query: 188 KVRILRPGGLEIETLKRAIS--VELEYCVD--ETSTPQSPGMLKSHYAPRSQVRL---RA 240 V +LRPG +E L + + V E + E + +PGM HYAP ++ L + Sbjct: 192 PV-LLRPGPFTLEELHQFLPEIVIPEQLIKGGEFTVALAPGMKYRHYAPSKKLLLVENYS 250 Query: 241 IHVNPREALIRFGNVPI-------KNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293 I + + L V + K+ E I L + L E A NLF+ + D Sbjct: 251 IFKDVVKLLRSKYKVAVLCTTEDFKDFEEPRIILGSREN--LYEIAKNLFDSFRKLDRLD 308 Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAA 320 +P G+G AI NR +A+ Sbjct: 309 VDMGVMEGVPEKGIGFAIMNRARKASG 335 >gi|332800045|ref|YP_004461544.1| Sua5/YciO/YrdC/YwlC family protein [Tepidanaerobacter sp. Re1] gi|332697780|gb|AEE92237.1| Sua5/YciO/YrdC/YwlC family protein [Tepidanaerobacter sp. Re1] Length = 347 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 105/345 (30%), Positives = 170/345 (49%), Gaps = 34/345 (9%) Query: 2 QIMSIT----DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 QI+S+ + ++KA E + G +A PTETVYGL ++ + +++Y K RP Sbjct: 5 QIVSVDKNRPEGYKIKKAAEIIKTGGLVAFPTETVYGLGGNALDEHVAKKIYAAKGRPQD 64 Query: 58 NPLICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTA 115 NPLI H+ +S + + P + L FWPGPLT++ DI P S T L T Sbjct: 65 NPLIVHIHSLSQLDELVKEIPTRAAVLMDKFWPGPLTII---FHKKDIIPYSTTGGLDTV 121 Query: 116 CFRVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174 R+P +LI+ G P+A PSAN SG+ S + + + + +I +I+DGG + + Sbjct: 122 AIRMPAHSVALELIKESGVPIAAPSANISGRPSPACAEDV-AEDLFGKIEMILDGGPTSV 180 Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCVDETSTPQSPGMLKSHYAPR 233 G+EST++++ EK ILRPGG+ E L+ + V L+ + P+SPG HYAP+ Sbjct: 181 GVESTVLDL-SEKVPIILRPGGVTKEDLEDVLGCVNLDPGLAPGEKPRSPGQKYRHYAPK 239 Query: 234 SQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKE---------------- 277 +Q+ + E ++ K +E+ + + + T + + Sbjct: 240 AQM---TVIEGCMENQVKTIQELTKQLESGGLKVGIMATAQTRHLYTRGYVISVGDRTAP 296 Query: 278 --AAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + NLF ++ D G I I G+G+A+ NRL +AA Sbjct: 297 LTISSNLFTILRKFDRLGVDRIFAEGISKDGIGLAVMNRLYKAAG 341 >gi|225874536|ref|YP_002755995.1| Sua5/YciO/YrdC/YwlC family protein [Acidobacterium capsulatum ATCC 51196] gi|225791509|gb|ACO31599.1| Sua5/YciO/YrdC/YwlC family protein [Acidobacterium capsulatum ATCC 51196] Length = 343 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 111/335 (33%), Positives = 179/335 (53%), Gaps = 32/335 (9%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 ++ +A E L AG +A PTETVYGL ++ + A+ ++E K+RPA +PLI HVS + M+ Sbjct: 11 SIARAAEILRAGGTVAFPTETVYGLGANALDAAAVAGIFEAKQRPAWDPLIVHVSSLEML 70 Query: 71 KKHASVDPL---SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + A D L + LA++FWPGPLT++L + ++ TA R+P + Sbjct: 71 SQVA--DELCDNAKRLAEVFWPGPLTMLLP--RSANVPDAVTAGRPLVGVRMPSHPIAQA 126 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LIE G P+A PSAN G+IS T +H+ + + I I+DGG + GLEST++ + + Sbjct: 127 LIEAAGVPVAAPSANSFGRISPTTAQHV-AEDLEGRIDAILDGGETIHGLESTVIEPRAD 185 Query: 187 KKVRILRPGGLEIETLKRAISVELEYC--VDETSTPQ---SPGMLKSHYAPRSQVRL--- 238 + I RPG + + L+ + +EY E S P+ SPG+ HYAPR++++L Sbjct: 186 HSI-IYRPGVVTAQQLRAVCAGSVEYYEPAHEKSAPESLPSPGVGLRHYAPRARLQLVEG 244 Query: 239 --RAIHVNPREALI-------RFGNVPIKNIENAII--SLNLSKTGKL---KEAAFNLFN 284 A RE ++ R G + ++ + A+I + ++ + G+ +E A LF Sbjct: 245 AGEAQMTALRETVLDAERIGERVGVMLPESFQTALIGCAAHVYRWGRWEDKEELAQRLFA 304 Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 ++ D G + I G+G AI +RL +AA Sbjct: 305 GLRQLDAEGLTLIVCPLPEAKGIGRAICDRLGKAA 339 >gi|291520269|emb|CBK75490.1| Sua5/YciO/YrdC/YwlC family protein [Butyrivibrio fibrisolvens 16/4] Length = 353 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 109/338 (32%), Positives = 172/338 (50%), Gaps = 33/338 (9%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +R+A E L G +A PTETVYGL D+ + A R++Y+ K RP+ NPLI H++ ++ Sbjct: 18 IREASEILKNGGLVAFPTETVYGLGGDATDKEASRKIYQAKGRPSDNPLIVHIAKFEQLE 77 Query: 72 KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCG-FTKKLI 128 + + P + LA FWPGPLT+V + ++ P +T L T R+P LI Sbjct: 78 QITTDLPETAKKLADAFWPGPLTMVCN---KNEVIPYETTGGLDTVAVRMPNNPVALALI 134 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E G +A PSAN SG+ S T H+ + +I I+DGG IGLESTIV++ E Sbjct: 135 EESGCMIAAPSANTSGRPSPTKASHVY-EDLSGKIEAILDGGPVDIGLESTIVDL-TEDI 192 Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV---DETST----PQSPGMLKSHYAPRSQVRLRA 240 V ILRPG + ++ LK + V ++ + D+ +T P++PGM HYAP+ + + + Sbjct: 193 VTILRPGYINMDMLKEVVGEVRMDPGIVYNDKGTTSGAKPKAPGMRYKHYAPKGDLTIVS 252 Query: 241 IHVNPREALIR--FGNVPIKNIENAIISLNLSKTGKLKEA--------------AFNLFN 284 N + I + + + II+ + + G+ ++ A NL++ Sbjct: 253 GEENKVVSTINKLTADKRAEGKKVGIIATS-ATAGRYEQGEVLIIGDREDEQSIAHNLYD 311 Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 ++ D+ I S +G AI NRL +AA + Sbjct: 312 ILRQFDELDVDIIYSESFATPKIGQAIMNRLLKAAGQK 349 >gi|153802309|ref|ZP_01956895.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|124122134|gb|EAY40877.1| conserved hypothetical protein [Vibrio cholerae MZO-3] Length = 328 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 108/330 (32%), Positives = 172/330 (52%), Gaps = 23/330 (6%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 Q+ ++T ++ + A + L G +AIPTETVYGLA D+ P A+++++ K RPA +PL Sbjct: 12 QQLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPL 70 Query: 61 ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I H+ + + A+ + P + LA+ FWPGPLTL+L + P+ T L++ RV Sbjct: 71 IVHLGSAEQLSEWATAIAPEAYQLAEAFWPGPLTLLLP--KAKQVSPVVTGGLESVGIRV 128 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P +++T+ +A PSAN ++S T+ + +L + + ++DGG + GLES Sbjct: 129 PAHPVLLDILKTHRLAVAAPSANPYKKLSPTSAQQVL-DGLNGRLAAVLDGGECQHGLES 187 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVE-LEYCVDETSTPQSPGMLKSHYAPRSQVR 237 TIV++ K R+LR G + L + E L+ V + + PG + SHY P++ R Sbjct: 188 TIVDL-TSKPFRVLRAGPITASELSAVLGQEVLQPQVHQVAV---PGNVDSHYQPKT--R 241 Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLK----EA-AFNLFNYMKIA--D 290 LR I E L GN+ I + + L S+ LK EA A+ Y +A D Sbjct: 242 LRVIDALENE-LATAGNIKIALLH--LSELQASEQRLLKPMPQEAKAYGQALYRSLAEVD 298 Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAA 320 G I P +A+++RL RAA+ Sbjct: 299 KWGVDEIWLERPPQGEAWLAVHDRLRRAAS 328 >gi|227827742|ref|YP_002829522.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus islandicus M.14.25] gi|229579263|ref|YP_002837661.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus islandicus Y.G.57.14] gi|229581976|ref|YP_002840375.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus islandicus Y.N.15.51] gi|229585013|ref|YP_002843515.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus islandicus M.16.27] gi|238619914|ref|YP_002914740.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus islandicus M.16.4] gi|284997945|ref|YP_003419712.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus islandicus L.D.8.5] gi|227459538|gb|ACP38224.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus islandicus M.14.25] gi|228009977|gb|ACP45739.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus islandicus Y.G.57.14] gi|228012692|gb|ACP48453.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus islandicus Y.N.15.51] gi|228020063|gb|ACP55470.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus islandicus M.16.27] gi|238380984|gb|ACR42072.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus islandicus M.16.4] gi|284445840|gb|ADB87342.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus islandicus L.D.8.5] gi|323474810|gb|ADX85416.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus islandicus REY15A] gi|323477515|gb|ADX82753.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus islandicus HVE10/4] Length = 358 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 103/329 (31%), Positives = 159/329 (48%), Gaps = 22/329 (6%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + ++KA + AG + PTETVYGL ++ + A+++++ K RP NPLI H+S+I Sbjct: 15 DKIKKAASVIKAGGTVVFPTETVYGLGANALDAEAVKKIFIAKNRPMDNPLIVHISNIDQ 74 Query: 70 VKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + A P +++ K+ WPGPLT VL T + +T L T R+P L Sbjct: 75 LYEVAKDIPEKIINIVKIVWPGPLTFVLK--KTDKVPKETTGGLDTIAVRMPAHPVALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I P+A PSAN + + S T +H++ K + +++D G + G+EST++NV + Sbjct: 133 INESDVPIAAPSANLATKPSPTKAEHVIDDLFGK-VDVVLDSGETFFGVESTVINVTVDP 191 Query: 188 KVRILRPGGLEIETLKR----AISVELEYCVDETSTPQSPGMLKSHYAPRSQVR------ 237 V +LRPG +E L+R I E E S +PGM HYAP + Sbjct: 192 PV-LLRPGPFSVEELERIFGKIIIPEQAKGTGEFSVALAPGMKYKHYAPTKKFLVVENRG 250 Query: 238 -LRAIHVNPREALIRFGNVPIKNI-----ENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291 LR + RE R + + E I + L L E + NLF+ + D Sbjct: 251 ILRDVIKELREKGYRVVFLCAHEVCKQFQEEKIEIIELGSENNLYEISRNLFDSFRKLDK 310 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320 S A S+ G+G+AI NR +A+ Sbjct: 311 SNADIGIIHSVSERGIGLAIMNRTRKASG 339 >gi|294658611|ref|XP_002770816.1| DEHA2F13486p [Debaryomyces hansenii CBS767] gi|202953256|emb|CAR66340.1| DEHA2F13486p [Debaryomyces hansenii] Length = 402 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 105/326 (32%), Positives = 161/326 (49%), Gaps = 35/326 (10%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK-----KHASVDPL 79 + PTETVYGL + N +++ +Y+ K RPA NPLI HVS I +K K + + Sbjct: 74 VGFPTETVYGLGGSALNDESVKSIYKAKNRPADNPLIVHVSSIDQLKRKILPKDYKIPEI 133 Query: 80 SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIP 138 +L + FWPGPLT++L + + I + TAN T R+P + LI PLA P Sbjct: 134 YDNLIEKFWPGPLTILLPIHEGSPISKIVTANQSTFAVRIPQHPIARALIALSDLPLAAP 193 Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLE 198 SAN S + S T H+ + +IP IIDGG +G+EST+V+ + + +LRPGG+ Sbjct: 194 SANASTRPSPTLASHVYHD-LQGKIPYIIDGGACDVGVESTVVDGLVDPPM-LLRPGGVS 251 Query: 199 IETLKRAISVELEYCV------DETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRF 252 +E +++ E V ++ ++PGM HY+P ++V L + A+ ++ Sbjct: 252 VEDVRKTGGGSWENVVLAKKTAGKSEAVKTPGMKYKHYSPTAKVVLFINCGDGIAAISKY 311 Query: 253 ---GNVP---------------IKNIENAI-ISLNLSKTGKLKEAAFNLFNYMKIADDSG 293 N+P + I I I +L TG E + NLF ++ D+ G Sbjct: 312 ISENNIPESKTIALLKSRYFTDARAISRQINIEEDLGATGP--EISRNLFKLLRQVDEQG 369 Query: 294 ASSIAFSSIPNHGLGIAINNRLERAA 319 I I G+A+ NRL +AA Sbjct: 370 VDIIFIEGIDETDEGLAVMNRLSKAA 395 >gi|171186194|ref|YP_001795113.1| Sua5/YciO/YrdC/YwlC family protein [Thermoproteus neutrophilus V24Sta] gi|170935406|gb|ACB40667.1| Sua5/YciO/YrdC/YwlC family protein [Thermoproteus neutrophilus V24Sta] Length = 345 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 104/329 (31%), Positives = 159/329 (48%), Gaps = 21/329 (6%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D ++ A E L G +A PTETVYGL D+R+ R+++ K RP NPLI HV + Sbjct: 12 DPQVVKTAAEVLRRGGIVAAPTETVYGLFADARSDAGCARVFKAKGRPPDNPLIVHVDSV 71 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 M + A V + K WPGPLTLVL S + TA L+T R P Sbjct: 72 EMATEVAEVPAELYEVLKRVWPGPLTLVLK--SKGVVSRCVTAGLETVAVRAPAHPVPLA 129 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 +I G P+A PSAN++G+ S T +H++ + E+ +++DGG + G+ESTI++V + Sbjct: 130 IIRELGAPIAGPSANKAGRPSPTAAEHVV-EDLGGEVDVVVDGGPTFFGVESTIIDV-TK 187 Query: 187 KKVRILRPGGLEIETLKRAIS-VE---LEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242 + +LRPG +E L+R +E + + E +PGM HYAP + L +H Sbjct: 188 RPPLLLRPGPFTVEELERFFGPIEVPPVARGLSEADVAVAPGMKYRHYAPDTP--LVVVH 245 Query: 243 VNPREALIRFGNVPIK--------NIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGA 294 + A + ++ A L L + E A NL+ ++ D Sbjct: 246 FDLSAAAAALRSRGLRVAVLCAVGKCAEADAVLRLGD--DIYEVAKNLYGALRELDRLSV 303 Query: 295 SSIAFSSIPNHGLGIAINNRLERAAAPRN 323 ++ G+G+A+ NRL +AA R Sbjct: 304 DVGLVPAVEERGIGLAVMNRLRKAAGHRE 332 >gi|88859366|ref|ZP_01134006.1| hypothetical protein PTD2_20322 [Pseudoalteromonas tunicata D2] gi|88818383|gb|EAR28198.1| hypothetical protein PTD2_20322 [Pseudoalteromonas tunicata D2] Length = 324 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 104/333 (31%), Positives = 167/333 (50%), Gaps = 33/333 (9%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 ++S + KA + ++ G +A+PTETVYGLA D+RN A+ +++ K RP +PLI Sbjct: 5 VLSAQQQADIAKAAQLIEQGELVAVPTETVYGLAADARNAQAVAKIFAAKGRPTNHPLIV 64 Query: 63 HVSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 H++D + + A P +L LA FWPGPLTL+L+ + + T L T RVP Sbjct: 65 HLADHTKMADWAKTVPETALKLAAAFWPGPLTLLLN--KAEGVSDVVTGGLTTVGLRVPA 122 Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L++ Y +A PSAN ++S T +H+L + + ++ ++DGG + GLESTI Sbjct: 123 HPALLSLLQQYDLAVAAPSANPYKKLSPTCAEHVL-TGLNGKLAAVLDGGACEHGLESTI 181 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQS-----PGMLKSHYAPRSQ 235 V++ + V+ILR G + L + + PQ PG +K+HY P + Sbjct: 182 VDLTGD-TVQILRAGPITANELSAVLG-------QPVTQPQQHNKAVPGNVKAHYQPNTL 233 Query: 236 VRL-------RAIH-VNPREALIRFGNVPIK-NIENAIISLNLSKTGKLKEAAFNLFNYM 286 +R+ A+ V + AL+ F K N+ + + G++ LF + Sbjct: 234 LRVMNKTQLNEALQSVTAQIALLSFETKSDKPNVHFVAMPTDAKDYGQV------LFREL 287 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 AD G + I S P +A ++RL+RAA Sbjct: 288 GKADTLGLAEIWLESPPQGQQWLAAHDRLKRAA 320 >gi|67539818|ref|XP_663683.1| hypothetical protein AN6079.2 [Aspergillus nidulans FGSC A4] gi|40738864|gb|EAA58054.1| hypothetical protein AN6079.2 [Aspergillus nidulans FGSC A4] Length = 1588 Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 86/238 (36%), Positives = 130/238 (54%), Gaps = 24/238 (10%) Query: 23 LPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK---------- 72 +P+A PTETVYGL D+ A++ +Y+ K+RP+ NPLI H+ + M+ + Sbjct: 1217 VPVAFPTETVYGLGADATRSDAVQGIYKAKQRPSDNPLIVHIDSLQMLNRLLNPASDTSC 1276 Query: 73 -----HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 +++ P+ L + FWPGPLT++L S + + P T+NL T R+P + Sbjct: 1277 PTKVVQSTIPPIYKALIERFWPGPLTILLPNPSGSRLAPEVTSNLTTFGVRMPLSPLARL 1336 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LI PLA PSAN S + S T +H+ + I LI+DGG +G+EST+V+ Sbjct: 1337 LIHVADRPLAAPSANASTKPSPTAAEHVF-HDLQGRIELILDGGPCGVGVESTVVD-GLS 1394 Query: 187 KKVRILRPGGLEIETLKRA---ISVELEY---CVDETSTPQSPGMLKSHYAPRSQVRL 238 ILRPGG+ IE L+ +V+L Y D P++PGM HY+P+++V L Sbjct: 1395 NPPSILRPGGVSIEELRTCPGWENVQLAYHDGTYDVKEIPRAPGMKYRHYSPKARVVL 1452 >gi|259479736|tpe|CBF70230.1| TPA: translation initiation protein Sua5 (AFU_orthologue; AFUA_2G09160) [Aspergillus nidulans FGSC A4] Length = 427 Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 86/238 (36%), Positives = 130/238 (54%), Gaps = 24/238 (10%) Query: 23 LPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK---------- 72 +P+A PTETVYGL D+ A++ +Y+ K+RP+ NPLI H+ + M+ + Sbjct: 56 VPVAFPTETVYGLGADATRSDAVQGIYKAKQRPSDNPLIVHIDSLQMLNRLLNPASDTSC 115 Query: 73 -----HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 +++ P+ L + FWPGPLT++L S + + P T+NL T R+P + Sbjct: 116 PTKVVQSTIPPIYKALIERFWPGPLTILLPNPSGSRLAPEVTSNLTTFGVRMPLSPLARL 175 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LI PLA PSAN S + S T +H+ + I LI+DGG +G+EST+V+ Sbjct: 176 LIHVADRPLAAPSANASTKPSPTAAEHVF-HDLQGRIELILDGGPCGVGVESTVVD-GLS 233 Query: 187 KKVRILRPGGLEIETLKRA---ISVELEY---CVDETSTPQSPGMLKSHYAPRSQVRL 238 ILRPGG+ IE L+ +V+L Y D P++PGM HY+P+++V L Sbjct: 234 NPPSILRPGGVSIEELRTCPGWENVQLAYHDGTYDVKEIPRAPGMKYRHYSPKARVVL 291 >gi|156744105|ref|YP_001434234.1| Sua5/YciO/YrdC/YwlC family protein [Roseiflexus castenholzii DSM 13941] gi|156235433|gb|ABU60216.1| Sua5/YciO/YrdC/YwlC family protein [Roseiflexus castenholzii DSM 13941] Length = 355 Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 107/346 (30%), Positives = 170/346 (49%), Gaps = 38/346 (10%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 S D + +A +++G +A PTETVYGL ++ + A+ R++ K RPA +P+I H+ Sbjct: 15 SAPDPRIIAEAAAVIESGGLVAFPTETVYGLGANALDERAVTRIFRAKGRPATDPIIAHI 74 Query: 65 SDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK----TACFRV 119 +D+ + A + P++ LA+ FWPGPLTLV+ P+ ANL T R+ Sbjct: 75 ADLRQLDMLARDIPPVARVLAQRFWPGPLTLVVWR------RPIVPANLSAGRATVAVRM 128 Query: 120 PC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P LI G P+A PSANR + S T H+L + I L++DGG + +G+ES Sbjct: 129 PAHPVALALIAAAGVPIAAPSANRFSRPSPTTAVHVL-DDLAGCIDLVLDGGPTLVGIES 187 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAIS---VELEY-CVDETSTPQSPGMLKSHYAP-- 232 ++V++ + R+LRPGG+ + L+ + VE Y V + + P +PGML HYAP Sbjct: 188 SVVDLTTDPP-RLLRPGGVTVAALRELLPELIVEPRYLSVGDEAAP-APGMLLRHYAPDA 245 Query: 233 ----------------RSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLK 276 RS+V L A+ + ++ F + + + + L Sbjct: 246 PLIVVAGEREAALARIRSEV-LMALDAGKQVGMLAFDEDVAELADLPVRIVALGSAANPG 304 Query: 277 EAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 + A LF ++ + G I GL +A+ +RL RAA R Sbjct: 305 QVAQRLFAALREIERIGVDLILVRDPGREGLRLAVRDRLVRAAEGR 350 >gi|167768294|ref|ZP_02440347.1| hypothetical protein CLOSS21_02850 [Clostridium sp. SS2/1] gi|317497775|ref|ZP_07956088.1| Sua5/YciO/YrdC/YwlC family protein [Lachnospiraceae bacterium 5_1_63FAA] gi|167709818|gb|EDS20397.1| hypothetical protein CLOSS21_02850 [Clostridium sp. SS2/1] gi|291560271|emb|CBL39071.1| translation factor SUA5 [butyrate-producing bacterium SSC/2] gi|316894964|gb|EFV17133.1| Sua5/YciO/YrdC/YwlC family protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 350 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 101/331 (30%), Positives = 166/331 (50%), Gaps = 26/331 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E + AG +A PTETVYGL + P A +++Y K RP+ NPLI HV D+ MV+ Sbjct: 18 MEEAGELIKAGELVAFPTETVYGLGGNGLLPDAAKKIYAAKGRPSDNPLILHVCDMQMVE 77 Query: 72 KHASVDPLSLHLA-KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 P + A + FWPGP+T++L + T L T R+P +LI Sbjct: 78 SLVKEIPDNARRAMEHFWPGPMTVILQ--KADQVPDCVTGGLDTVAIRMPDHPVALELIR 135 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G P+A PSAN SG+ S T +H++ + +IP+I+DGG +G+ESTI++ E Sbjct: 136 RSGVPIAAPSANTSGRPSPTKAEHVM-EDLHGKIPMILDGGAVMVGVESTIIDF-TEIVP 193 Query: 190 RILRPGGLEIETLKRAISVEL----EYCVDETSTPQSPGMLKSHYAPRSQVRL------- 238 ILRPG + E+++ + E+ + P++PGM HYAP++++ L Sbjct: 194 VILRPGWITKESMEEFLGCEVLMNTSLKASDHGIPRAPGMKYKHYAPKAEMVLVLGDDQE 253 Query: 239 RAI-HVN-----PREALIRFGNV---PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIA 289 + + H+N +E + G + K++ A +++ + L+ +L++ ++ Sbjct: 254 KVVNHINQLAKEQKEQGKKIGIIASDETKDLYQADEVVSVGQRAHLETVTAHLYDVLREF 313 Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 D I L AI NR+ +AA Sbjct: 314 DHKDVDMIYSEGFEGEPLSEAIMNRMVKAAG 344 >gi|323466865|gb|ADX70552.1| Sua5 family translation factor [Lactobacillus helveticus H10] Length = 339 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 109/341 (31%), Positives = 164/341 (48%), Gaps = 32/341 (9%) Query: 1 MQIMS--ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58 ++IM I + + +A + L G +A PTETVYGL + +++ +Y K RP+ N Sbjct: 4 IKIMETKIFKKDQIDEAVKLLAEGELVAFPTETVYGLGAIATKEKSVKGVYAAKGRPSDN 63 Query: 59 PLICHVSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 PLI VSD M++++A P + L K FWPGPLTL+L + + T L T F Sbjct: 64 PLIVTVSDEKMMERYAKEVPERAKKLIKHFWPGPLTLLL-FVKPGTLPDAVTGGLDTVAF 122 Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R P T LI G+P+ PSAN S + S T +H+ + +I IIDGG +++GL Sbjct: 123 RCPDDQLTHDLIAKLGYPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDGGPTRVGL 181 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPR 233 ESTI+++ + + +LRPG + E L + ++ V + P++PGM HYAP Sbjct: 182 ESTIIDLSVKTPI-VLRPGEITPEELSEVLGEKVLINTGKVADKDVPKAPGMKYRHYAPS 240 Query: 234 SQV-------RLRAIHVNPREALIRFG------NVPIKNIENAIISLNLSKTGKLKEAAF 280 V I N + + G N+P +N +L K L +A Sbjct: 241 EPVVVVDDPADFGKIDFNDKTGVAALGSVLDQINLPEEN------KFDLGKN--LIDADH 292 Query: 281 NLFNYMKIADD-SGASSIAFSSIPNHGLGIAINNRLERAAA 320 NLF ++ DD +I +A NRL +AA Sbjct: 293 NLFGALRYFDDKDDIETIYVQGFDEGEESLAYMNRLNKAAG 333 >gi|299529402|ref|ZP_07042840.1| Sua5/YciO/YrdC/YwlC family protein [Comamonas testosteroni S44] gi|298722651|gb|EFI63570.1| Sua5/YciO/YrdC/YwlC family protein [Comamonas testosteroni S44] Length = 332 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 110/342 (32%), Positives = 174/342 (50%), Gaps = 37/342 (10%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 I+ T +++ A L G + +PTETVYGLA DS N A+ +++ K RPA +PLI Sbjct: 2 ILDGTLEASVQAAAVALQQGRLLGLPTETVYGLAADSDNDAAVAQIFAAKGRPANHPLIV 61 Query: 63 HVSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 HV+D + + ++A P + L FWPGPLTL+L L ST + R P Sbjct: 62 HVADAAAITRYAKEVPVFAQQLIDAFWPGPLTLILPRLPHA--AKASTGGQDSVGLRCPS 119 Query: 122 GFTKKLI---------ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172 + +G ++ PSAN+ G++S T +H+ +S +E+ L++DGG Sbjct: 120 HPVAHAVLQACQQLDPPVWG--VSAPSANKFGRVSPTTAEHV-ASEFGEEL-LVLDGGAC 175 Query: 173 KIGLESTIVNVQCEKKVRI-LRPGGLEIETLKRAISV----ELEYCVDETSTPQSPGMLK 227 ++G+ESTIV+ C + V + LRPG + + + RA + + E D TP++ G L Sbjct: 176 EVGIESTIVD--CTRGVPVLLRPGAITRDDIARACGLRPLSKEELTAD---TPRASGTLL 230 Query: 228 SHYAPRSQVRLRAIHVNPREALIRFG----NVPIK-----NIENAIISLNLSKTGKLKEA 278 +HYAP ++VRL + AL G N+ I N+ A + L + + ++ Sbjct: 231 AHYAPNAKVRLMDAG-QLQSALGILGKDGRNIAIYHRSPLNVTTAQLLLR-RMSDEPRDV 288 Query: 279 AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 A LF ++ DD GA I + P+ + +RL+RAAA Sbjct: 289 ARELFGMLRNFDDWGAKLIWIETPPDTADWEGVRDRLQRAAA 330 >gi|260951309|ref|XP_002619951.1| hypothetical protein CLUG_01110 [Clavispora lusitaniae ATCC 42720] gi|238847523|gb|EEQ36987.1| hypothetical protein CLUG_01110 [Clavispora lusitaniae ATCC 42720] Length = 388 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 107/345 (31%), Positives = 165/345 (47%), Gaps = 33/345 (9%) Query: 6 ITDSNALRK----ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 I+D+ L A +G +A PTETVYGL + + ++R +Y K RPA NPLI Sbjct: 37 ISDAETLENLRLAASHVRQSGSIVAFPTETVYGLGGSALDDDSVRAIYTAKNRPADNPLI 96 Query: 62 CHVSDISMVKK-----HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 HV+ + +++ + + L FWPGPLT++L + + + L TA T Sbjct: 97 VHVASVDQIQRLILPSSRQIPAVYEKLIAKFWPGPLTILLPIEKGSPVSQLVTAGQNTVG 156 Query: 117 FRVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R+P + LI PLA PSAN S + S T +H+L + IP I+DGG +G Sbjct: 157 VRMPSDSVARALIALSDTPLAAPSANASTRPSPTLAEHVL-YDLDTRIPYILDGGPCTVG 215 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV------DETSTPQSPGMLKSH 229 +EST+V+ + +LRPGG+ E ++ + + +T ++PGM H Sbjct: 216 VESTVVDGLVSPPM-LLRPGGVSPEQIRESGGYGWNEVILAKKTAGKTEPVRTPGMKYRH 274 Query: 230 YAP-------------RSQVRLRAIHVNPREALIRFGN-VPIKNIENAIISLNLSKTGKL 275 Y+P R+ VR + R AL+R VP + ++ S T Sbjct: 275 YSPTARVILFVGCGDGRTAVRKYVDQHSGRVALLRSKQFVPASEMGISVSSDKEMGT-SA 333 Query: 276 KEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 E A NLF ++ D+SG I ++ G G+A+ NRL +AA+ Sbjct: 334 AEVARNLFRLLREVDESGVDMILVEAVDEVGDGLAVMNRLSKAAS 378 >gi|257066248|ref|YP_003152504.1| Sua5/YciO/YrdC/YwlC family protein [Anaerococcus prevotii DSM 20548] gi|256798128|gb|ACV28783.1| Sua5/YciO/YrdC/YwlC family protein [Anaerococcus prevotii DSM 20548] Length = 344 Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 105/332 (31%), Positives = 170/332 (51%), Gaps = 26/332 (7%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + +++A L G +AIPTETVYGL + + A +++ K RPA NPLI H+S+ Sbjct: 14 DEDIIKRAAVLLRRGELVAIPTETVYGLGANGLDEKACLNIFKTKNRPADNPLILHISNK 73 Query: 68 SMVKKHASVDPLSLHLAKL--FWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCG-F 123 M+ + V+ +S KL WPGPLT++ ++I P + TA T R P Sbjct: 74 EML--YNLVEDVSDDAKKLMTLWPGPLTMI---FKKSEIIPEVVTAGGDTVAVRFPVDEI 128 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 +++IE P+A PSAN SG+ S TN + +IPLIIDGG IG+EST++++ Sbjct: 129 ARRIIEEANIPIAAPSANISGRPSPTNASDCY-YDLNGKIPLIIDGGDCNIGIESTVIDM 187 Query: 184 QCEKKVRILRPGGLEIETLKRAI-SVELEYC-VDETSTPQSPGMLKSHYAPRSQVRLRA- 240 E ILRPG +E ++ + +V L+ VD+ P+SPG HYAP++++++ Sbjct: 188 -SEDTPTILRPGFYTLEYIREILPNVALDDALVDDNKIPKSPGQKYKHYAPKARMQVYVG 246 Query: 241 ------IHVNPREALIRFGNVPIKNIEN------AIISLNLSKTGKLKEAAFNLFNYMKI 288 I+ RE + V + E+ ++ L + + LF ++ Sbjct: 247 DMASDFIYKKAREYQNKGIKVGVLVFEDNMKRFEGFERISFGDRSDLSQMSHVLFTALRK 306 Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 D I + ++ LG +I NR++++AA Sbjct: 307 MDKLKVDLILAEGVMDNNLGKSIMNRMKKSAA 338 >gi|119776125|ref|YP_928865.1| SUA5/YciO/YrdC family translation initiation protein [Shewanella amazonensis SB2B] gi|119768625|gb|ABM01196.1| translation factor SUA5 [Shewanella amazonensis SB2B] Length = 315 Score = 139 bits (349), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 108/329 (32%), Positives = 166/329 (50%), Gaps = 23/329 (6%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 + ITD +L A L+ G +A+PTETVYGLA D+ N A+ +++ +K RPA NPLI Sbjct: 1 MAQITDQISL--AVAALNRGELVAMPTETVYGLAADAGNADAVAKVFALKGRPATNPLIV 58 Query: 63 HVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 HV+D S + AS V + L FWPGPLTLVL + T + TA T R+P Sbjct: 59 HVADASWINDWASDVGQDAEALMAAFWPGPLTLVLP--AKTYVSRAVTAGQNTVALRMPA 116 Query: 122 GFTK-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L++ +G L PSAN+ IS T+ H+ E+ LI++GG ++GLESTI Sbjct: 117 HPQALALLKDFGRALVAPSANKYMSISPTSSDHVARQFAGDEL-LILEGGNCRVGLESTI 175 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAP-----RSQ 235 V + + R+LRPG + + +++ + + ++ +PG HY+P R Sbjct: 176 VALLPGDEPRLLRPGMVSVASIEAVLGRPV---AQQSGGVVAPGQHHKHYSPGLPCYRYG 232 Query: 236 VRLRAIHVNPREALIRFGNVPIKNIENAI-ISLNLSKTGKLKEA-AFNLFNYMKIADDSG 293 H L++ ++ NA+ ++ + G +A A L++ + D Sbjct: 233 AESDVSH------LLQANDIGWIFCGNAVPVAGKAIELGADPDAYAQGLYDALYQLDHET 286 Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAAPR 322 S+I + P+ A+ NRLERAA PR Sbjct: 287 LSAIYIAEPPHSSEWQAVQNRLERAAKPR 315 >gi|85014437|ref|XP_955714.1| translation factor [Encephalitozoon cuniculi GB-M1] gi|19171408|emb|CAD27133.1| similarity to PROTEIN REQUIRED FOR NORMAL GROWTH (SUA5/YRDC/YC10/YWLC FAMILY) [Encephalitozoon cuniculi GB-M1] Length = 337 Score = 139 bits (349), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 116/343 (33%), Positives = 177/343 (51%), Gaps = 36/343 (10%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+I+S + +A F D +A+PTETVYGLA NP A+ RL ++K+RPA NPL Sbjct: 1 MKIVSTKELDADFVVRFFDDV---VAVPTETVYGLAASIYNPRAVERLLKLKRRPADNPL 57 Query: 61 ICHVSDISMVKK--HASVDPLSLHLAKLFWPGPLTLVLDLLSTTD-IHPLSTANLKTACF 117 VS M+K+ + L +FWPGPLTL L + D + + + L++ Sbjct: 58 PVAVSSYRMLKEIVKEPIPEEYRRLMDMFWPGPLTL---LFRSKDCVSSVIRSGLESVAV 114 Query: 118 RVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P ++IE G P+ +PSAN SG+ S T H++ E+ LIIDGG IGL Sbjct: 115 RMPKSKHLLEIIERLGAPVVLPSANISGRPSPTTAGHVV-EDFGDEVKLIIDGGPCPIGL 173 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAIS--VELEYCVDETSTPQSPGMLKSHYAPRS 234 EST+V+ + ++ILRPGG+ +E ++ + V + ++ T SPG HY+PRS Sbjct: 174 ESTVVS-YADGGLQILRPGGITVEDIESVANCKVFVRNRANDEETELSPGQKYKHYSPRS 232 Query: 235 QVRLRAIHVNPRE---ALIRF--GNVPIKNIENAI---ISLNLSKTGKL---------KE 277 + L P E ++ + N + I A+ I L + G++ +E Sbjct: 233 PLIL--FKGQPEEVKSGILEYIRANPDVSRIGVALHSGIDLGVPVDGRISVFNMGSDRRE 290 Query: 278 AAFNLFNYMKIADDSGASSIAFSSIPNHG-LGIAINNRLERAA 319 NLF ++ D SS+ ++ ++G G AI NRLE+AA Sbjct: 291 VCRNLFEGLRSLDK--ISSVILAAGVDYGEEGDAIMNRLEKAA 331 >gi|121698888|ref|XP_001267839.1| translation initiation protein Sua5 [Aspergillus clavatus NRRL 1] gi|119395981|gb|EAW06413.1| translation initiation protein Sua5 [Aspergillus clavatus NRRL 1] Length = 433 Score = 139 bits (349), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 91/256 (35%), Positives = 143/256 (55%), Gaps = 28/256 (10%) Query: 8 DSNALRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 +++A+ +A + L + +P+A PTETVYGL D+ A++ +Y+ K+RP+ NPLI HV Sbjct: 38 EASAIEEAAQLLQTSDIPVAFPTETVYGLGADATRSAAVQGIYKAKQRPSDNPLIVHVDS 97 Query: 67 ISMVKKHASVDPLS----------------LHLAKLFWPGPLTLVLDLLSTTDIHPLSTA 110 + M+++ + P+S L + FWPGPLT++L S + + TA Sbjct: 98 LEMLERLLNPAPMSPTRAMKTARHSIPAIYRPLIERFWPGPLTILLPNPSGSLLADEVTA 157 Query: 111 NLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169 NL T RVP + LI PLA PSAN S + S T +H+ + I LI+DG Sbjct: 158 NLTTFGVRVPASPLARLLIHVADRPLAAPSANASTKPSPTAAEHVY-HDLQGRIELILDG 216 Query: 170 GISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAI----SVELEY---CVDETSTPQS 222 G+ +G+EST+V+ +LRPGG+ IE + RA+ +V++ Y +D P++ Sbjct: 217 GLCGVGVESTVVD-GLSNPPAVLRPGGVGIEEI-RAVPGWENVQVAYQDGTLDVKEIPRA 274 Query: 223 PGMLKSHYAPRSQVRL 238 PGM HY+P+++V L Sbjct: 275 PGMKYRHYSPKARVVL 290 >gi|261334880|emb|CBH17874.1| hypothetical protein, conserved [Trypanosoma brucei gambiense DAL972] Length = 379 Score = 139 bits (349), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 112/372 (30%), Positives = 181/372 (48%), Gaps = 58/372 (15%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I D + L A L G +A+PTETVYGL ++ + A+++++E+K RP+ +PLICHV Sbjct: 4 IIDVSELDYAAHSLTRGGLVALPTETVYGLGGNALDERAVQQIFEVKGRPSTDPLICHVP 63 Query: 66 DI--SMVKKHASVDPLSLHLAKL----FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 DI ++ ++ DP +L +AK WPGPLT+V + + + P T N R+ Sbjct: 64 DIQRAVGLWDSNADPAALEVAKWIGDAIWPGPLTIVFR--ANSVLPPSVTGNSGYVGVRI 121 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP--LIIDGGISKIGL 176 P +L++ P+A PSAN G +S T +H+L + + P L+IDGG S IG+ Sbjct: 122 PNHPIALQLLQLVNFPVAAPSANTFGHVSPTTAEHVL-RDLGERCPSLLVIDGGHSNIGI 180 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV---DETSTP-------QSPGML 226 EST++ V KV ILR G + + L++ I + E + D S P PG L Sbjct: 181 ESTVLKVASATKVEILRRGKVSLADLQQVIWKKFECHITVRDTRSCPGTVDMAMDGPGQL 240 Query: 227 KSHYAPRSQVRLRA-------IHVNP---------------------REALIRFGNVPIK 258 +HY+P + +H N + +I FG + + Sbjct: 241 LTHYSPSVLSGMLTPKSTNCEVHQNELDKAVVELPSTPPLTGGVPLNQTVIIDFGGLLQR 300 Query: 259 NIENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSIAF---SSIP----NHGLGIA 310 + +LS G++++A F +F ++ ++ SGA + F S P + L A Sbjct: 301 FQRVCLAYRDLSAEGEVQQACFAVFEALRWSETVSGAGVVLFPLISEWPCKTGDEELLAA 360 Query: 311 INNRLERAAAPR 322 + +RL RAA+ + Sbjct: 361 VEDRLFRAASGK 372 >gi|115372429|ref|ZP_01459738.1| Sua5/YciO/YrdC/YwlC [Stigmatella aurantiaca DW4/3-1] gi|115370642|gb|EAU69568.1| Sua5/YciO/YrdC/YwlC [Stigmatella aurantiaca DW4/3-1] Length = 297 Score = 139 bits (349), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 105/303 (34%), Positives = 153/303 (50%), Gaps = 16/303 (5%) Query: 32 VYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPG 90 +YGLA ++ + A+RR++ IK RPA +PLI H+ + + A + P + LA FWPG Sbjct: 1 MYGLAANAEDELAVRRVFAIKGRPATHPLIVHLPQAEALPRWARDIPPEAWKLAAAFWPG 60 Query: 91 PLTLVLDLLS-TTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANRSGQISI 148 PLTLVL S TD T T RVP ++ G LA PSANR G++S Sbjct: 61 PLTLVLRRTSRATDA---VTGGQDTVALRVPNHPLALAVLSALGGGLAAPSANRFGRVSP 117 Query: 149 TNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISV 208 T H+ + ++ LI+DGG +G+ESTIV++ ILRPGGL E L+ + Sbjct: 118 TTAGHV-REDLGSDVDLILDGGPCTVGVESTIVDLSSGDPA-ILRPGGLAAEELEHVLGR 175 Query: 209 ELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI-HVNPREALIRFGNVPIKNIENAIISL 267 + V TS+ + G L SHYAPR+ V L + R +R + + + A ++L Sbjct: 176 PVP--VRATSSVRVSGSLASHYAPRAGVTLVEVPEAAARAQALRGQGLRVGVLGPASLAL 233 Query: 268 -----NLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 AA +L+ ++ AD +G + GLG+A+ +RL RAAAPR Sbjct: 234 PPGVPRFDMPEDPAGAAHDLYLRLREADLAGLDLLLACLPSARGLGLAVRDRLARAAAPR 293 Query: 323 NQS 325 Sbjct: 294 TSG 296 >gi|254291504|ref|ZP_04962295.1| conserved hypothetical protein [Vibrio cholerae AM-19226] gi|150422568|gb|EDN14524.1| conserved hypothetical protein [Vibrio cholerae AM-19226] Length = 328 Score = 139 bits (349), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 107/330 (32%), Positives = 172/330 (52%), Gaps = 23/330 (6%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 Q+ ++T ++ + A + L G +AIPTETVYGLA D+ P A+++++ K RPA +PL Sbjct: 12 QQLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPL 70 Query: 61 ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I H+ + + A+ + P + LA+ FWPGPLTL+L + P+ T L++ RV Sbjct: 71 IVHLGSAEQLSEWATDIAPEAYQLAEAFWPGPLTLLLP--KAKQVSPVVTGGLESVGIRV 128 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P +++T+ +A PSAN ++S T+ + +L + + ++DGG + GLES Sbjct: 129 PAHPVLLDILKTHRLAVAAPSANPYKKLSPTSAQQVL-DGLNGRLAAVLDGGECQHGLES 187 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVE-LEYCVDETSTPQSPGMLKSHYAPRSQVR 237 TIV++ K R+LR G + L + E ++ V + + PG + SHY P++ R Sbjct: 188 TIVDL-TSKPFRVLRAGPITASELSAVLGQEVMQPQVHQVAV---PGNVDSHYQPKT--R 241 Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLK----EA-AFNLFNYMKIA--D 290 LR I E L GN+ I + + L S+ LK EA A+ Y +A D Sbjct: 242 LRVIDALENE-LATAGNIKIALLH--LSELQASEQRLLKPMPQEAKAYGQALYRSLAEVD 298 Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAA 320 G I P +A+++RL RAA+ Sbjct: 299 KWGVDEIWLERPPQGEAWLAVHDRLRRAAS 328 >gi|254497395|ref|ZP_05110195.1| Sua5/YciO/YrdC/YwlC family protein [Legionella drancourtii LLAP12] gi|254353374|gb|EET12109.1| Sua5/YciO/YrdC/YwlC family protein [Legionella drancourtii LLAP12] Length = 323 Score = 139 bits (349), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 108/326 (33%), Positives = 161/326 (49%), Gaps = 27/326 (8%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS---DISMVK 71 A L AG P+AIPTETVYGLA N AI+ ++ +K+RP +PLI HV+ D+S + Sbjct: 11 AVHDLQAGKPVAIPTETVYGLAAPINNEQAIKAVFAMKERPLNHPLIVHVAANWDLSTLV 70 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 + + L K FWPGPLTLVL + T I+PL T R P ++L+ Sbjct: 71 T--DIPAYANLLIKKFWPGPLTLVLR-CNPTQINPLINGGQTTVAIRCPAHPLAQELLTQ 127 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 P+ PSAN G++S T H+ S ++ I+DGG +G+ESTIV+ + + Sbjct: 128 LRIPVVAPSANPFGKVSPTTALHV-QESFPQQALTILDGGRCTVGIESTIVDASNPEHYQ 186 Query: 191 ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALI 250 ILR G ++ +++ I+ D+ S + PG L SHY P+ + A + E L Sbjct: 187 ILRHGLIDEQSIAAVITAPAR---DQPSRIRVPGKLDSHYQPQKTLYYFADY----EHLA 239 Query: 251 RFGNVPIKNIENAIISLNLSKT----------GKLKEAAFNLFNYMKIADDSGASSIAFS 300 +F + E I+ T + ++AAF+L+ ++ AD S A IA Sbjct: 240 QFCQQ--SSAEIYAIASKCPATVHHEHYHPLATQPEQAAFDLYFQLRAADASNAQCIAIE 297 Query: 301 SIPNHGLGIAINNRLERAAAPRNQSQ 326 P +GL I R+ +A P Q Sbjct: 298 LPPENGLWQGIRERILKAGIPYAAEQ 323 >gi|297543678|ref|YP_003675980.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841453|gb|ADH59969.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 354 Score = 139 bits (349), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 102/336 (30%), Positives = 171/336 (50%), Gaps = 32/336 (9%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A + + G +A PTETVYG+ +S + A+++++ +K RP NPLI H++++ + Sbjct: 20 AAKVIREGGLVAFPTETVYGIGANSFDEEAVKKIFMVKGRPQDNPLIVHIAELEQIYDLV 79 Query: 75 SVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132 P L + FWPGPLTL+ + + ++TA + T R+P LI+ Sbjct: 80 EDIPQKAKILMEKFWPGPLTLIFK--KSQKVPYVNTAGMDTVAIRMPSDTIAHLLIKRAK 137 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192 P++ PSAN SG+ S T+ H++ + ++ +IIDGG G+EST++++ EK +L Sbjct: 138 VPISAPSANVSGKPSPTDASHVV-EDLDGKVDIIIDGGKCDFGVESTVLDL-TEKMPVVL 195 Query: 193 RPGGLEIETLKRAI-SVELEYCVDETS----TPQSPGMLKSHYAPRSQVRL--------- 238 RPG + +E LK I +VE++ + + P+SPGM HY+P ++V + Sbjct: 196 RPGAVTLEMLKEVIGNVEVDPSLLKKPKGNLKPKSPGMKYKHYSPNAEVYIVKGDLEKVV 255 Query: 239 RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKL---------KEAAFNLFNYMKIA 289 + I E L ++G I + + K G++ + A NLF ++ Sbjct: 256 KKIQELTEEQL-KYGKKV--GIMATVQTSTQYKKGEIIVVGDRKRPETIAKNLFAVLRQF 312 Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325 D G I S + +G+AI NRLE+AA + S Sbjct: 313 DKKGVDVIFAESFEYNNIGLAIMNRLEKAAGYKEIS 348 >gi|227830451|ref|YP_002832231.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus islandicus L.S.2.15] gi|227456899|gb|ACP35586.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus islandicus L.S.2.15] Length = 358 Score = 139 bits (349), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 103/329 (31%), Positives = 158/329 (48%), Gaps = 22/329 (6%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + ++KA + AG + PTETVYGL ++ + A+++++ K RP NPLI H+S+I Sbjct: 15 DKIKKAASVIKAGGTVVFPTETVYGLGANALDAEAVKKIFIAKNRPMDNPLIVHISNIDQ 74 Query: 70 VKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + A P +++ K+ WPGPLT VL T + +T L T R+P L Sbjct: 75 LYEVAKDIPEKIINIVKIVWPGPLTFVLK--KTDKVPKETTGGLDTIAVRMPAHPVALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I P+A PSAN + + S T +H++ K + +++D G + G+EST++NV + Sbjct: 133 INESDVPIAAPSANLATKPSPTKAEHVIDDLFGK-VDVVLDSGETFFGVESTVINVTVDP 191 Query: 188 KVRILRPGGLEIETLKR----AISVELEYCVDETSTPQSPGMLKSHYAPRSQVR------ 237 V +LRPG +E L+R I E E S +PGM HYAP + Sbjct: 192 PV-LLRPGPFSVEELERIFGKIIIPEQAKGTGEFSVALAPGMKYKHYAPTKKFLVVENRG 250 Query: 238 -LRAIHVNPREALIRFGNVPIKNI-----ENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291 LR + RE R + + E I + L L E + NLF + D Sbjct: 251 ILRDVIKELREKGYRVVFLCAHEVCKQFQEEKIEIIELGSENNLYEISRNLFGSFRKLDK 310 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320 S A S+ G+G+AI NR +A+ Sbjct: 311 SNADIGIIHSVSERGIGLAIMNRTRKASG 339 >gi|258626302|ref|ZP_05721149.1| conserved hypothetical protein [Vibrio mimicus VM603] gi|258581354|gb|EEW06256.1| conserved hypothetical protein [Vibrio mimicus VM603] Length = 322 Score = 139 bits (349), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 103/328 (31%), Positives = 166/328 (50%), Gaps = 18/328 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 Q+ ++T ++ + A + L G +AIPTETVYGLA D+ P A+++++ K RPA +PL Sbjct: 5 QQLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADASQPEAVKQIFSAKGRPANHPL 63 Query: 61 ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I H + + A+ V P + LA+ FWPGPLT++L + P+ T L+T RV Sbjct: 64 IVHFGSAEQIAEWATDVAPEAYQLAEAFWPGPLTMLLP--KAEHVSPVVTGGLETVGLRV 121 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P ++++ + +A PSAN ++S T+ + +L + ++ ++DGG + GLES Sbjct: 122 PAHPVLLEILKAHHLAVAAPSANPYKKLSPTSAQQVL-DGLNGKLAAVLDGGECQHGLES 180 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVE-LEYCVDETSTPQSPGMLKSHYAPRSQVR 237 TIV++ K R+LR G + L + E L+ V + + PG + SHY P++ R Sbjct: 181 TIVDL-TSKPFRVLRAGPITASELSAVLGQEVLQPHVHQVAV---PGNVDSHYQPKT--R 234 Query: 238 LRAIHVNPREALIRFGNVPIKNI---ENAIISLNLSKTGKLKEAAFNLFNYMKIA--DDS 292 LR I E + +V I + E L K A+ Y +A D Sbjct: 235 LRVIDNVQNELATQASDVKIALLHLSEQQASEQRLLKPMPQDAKAYGQALYRSLAEVDKW 294 Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAA 320 G I P +A+++RL RAA+ Sbjct: 295 GVDEIWLERPPQGEAWLAVHDRLRRAAS 322 >gi|221069970|ref|ZP_03546075.1| Sua5/YciO/YrdC/YwlC family protein [Comamonas testosteroni KF-1] gi|220714993|gb|EED70361.1| Sua5/YciO/YrdC/YwlC family protein [Comamonas testosteroni KF-1] Length = 332 Score = 138 bits (348), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 109/342 (31%), Positives = 172/342 (50%), Gaps = 37/342 (10%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 I+ T +++ A L G + +PTETVYGLA DS N A+ +++ K RPA +PLI Sbjct: 2 ILDGTLEASVQAAALALQQGRLLGLPTETVYGLAADSDNDAAVAQIFAAKGRPANHPLIV 61 Query: 63 HVSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 HV+D + + ++A P + L FWPGPLTL+L L ST + R P Sbjct: 62 HVADAAAITRYAKEVPVFAQQLIDAFWPGPLTLILPRLPHA--AKASTGGQDSVGLRCPS 119 Query: 122 GFTKKLI---------ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172 + +G ++ PSAN+ G++S T +H+ + E L++DGG Sbjct: 120 HPVAHAVLQACQQLDPPVWG--VSAPSANKFGRVSPTTAEHVATE--FGEALLVLDGGAC 175 Query: 173 KIGLESTIVNVQCEKKVRI-LRPGGLEIETLKRAISV----ELEYCVDETSTPQSPGMLK 227 ++G+ESTIV+ C + V + LRPG + + ++RA + + E D TP++ G L Sbjct: 176 EVGIESTIVD--CTRGVPVLLRPGAITRDDIERACGLRPLSKEELTAD---TPRASGTLL 230 Query: 228 SHYAPRSQVRLRAIHVNPREALIRFG----NVPIK-----NIENAIISLNLSKTGKLKEA 278 +HYAP ++VRL + AL G N+ I N+ A + L + + ++ Sbjct: 231 AHYAPNAKVRLMDAG-QLQSALDILGKDGRNIAIYHRGPLNVTTAQLLLR-RMSDEPRDV 288 Query: 279 AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 A LF ++ DD GA I + P+ + +RL+RAAA Sbjct: 289 ARELFGMLRNFDDWGAKLIWIETPPDTADWEGVRDRLQRAAA 330 >gi|187777267|ref|ZP_02993740.1| hypothetical protein CLOSPO_00819 [Clostridium sporogenes ATCC 15579] gi|187774195|gb|EDU37997.1| hypothetical protein CLOSPO_00819 [Clostridium sporogenes ATCC 15579] Length = 355 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 102/338 (30%), Positives = 174/338 (51%), Gaps = 32/338 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + + KA L G + PTETVYGL ++ + A+++++E K RP NPLI H+S + Sbjct: 18 DEHIISKAGNILRQGGLVVFPTETVYGLGANALDKDAVKKIFEAKGRPQDNPLIVHISKV 77 Query: 68 SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLST-ANLKTACFRVPCG-FT 124 ++K + P++ L FWPGP+T++ L DI P T A L + R+P Sbjct: 78 KDIEKLVEKIPPIAQKLMDKFWPGPMTII---LKKKDIIPNETSAGLDSIGIRMPSNKIA 134 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 +LI G P+A PSAN SG+ S T+++ + + + I+ G S++G+EST+++ Sbjct: 135 MELISMAGVPIAAPSANLSGKPSPTDLETCV-EDLDGRVNAILGGDNSEVGVESTVIDCT 193 Query: 185 CEKKVRILRPGGLEIETLKRAIS-VELEYCV----DETSTPQSPGMLKSHYAPRSQVRLR 239 + ILRPGG+ +E LK S + ++ + D+ P++PGM HYAP++ +++ Sbjct: 194 IDPPC-ILRPGGITLEMLKEVDSNIYIDPAIMKKPDKELRPKAPGMKYRHYAPKAPLKII 252 Query: 240 AIHVNPR------------EALIRFGNVPI-KNIEN----AIISLNLSKTGKLKEAAFNL 282 +N +A + G + + I+N ++S+ K L A NL Sbjct: 253 KGDLNKTIEKINEMVQNYIDAEKKVGIIATDETIDNYKKGEVVSIGSRKD--LNTIAHNL 310 Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 F ++ D+ I + +G+AI NRL+++A Sbjct: 311 FYVLRTFDEKNVDLILSEAFEEKDMGVAIMNRLKKSAG 348 >gi|160947260|ref|ZP_02094427.1| hypothetical protein PEPMIC_01193 [Parvimonas micra ATCC 33270] gi|158446394|gb|EDP23389.1| hypothetical protein PEPMIC_01193 [Parvimonas micra ATCC 33270] Length = 341 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 112/348 (32%), Positives = 173/348 (49%), Gaps = 45/348 (12%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +I+ T N R A L+ + +AIPTETVYGL + + A+ ++++ K RP NPLI Sbjct: 3 EILKPTRENIERSAKLILNDKI-VAIPTETVYGLGANGLSDIAVSKIFKAKNRPQDNPLI 61 Query: 62 CHVSDISMVKK--HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFR 118 H+SD M++ + D + L FWPGPLT+V + DI P + + L T R Sbjct: 62 LHISDYDMMENLVYELNDEIKEFLNH-FWPGPLTVV---MKKKDIIPDAISCGLDTVAIR 117 Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 +P + I+ G P+A PSAN SG+ S T + + + K I +I+DGG+ IG+E Sbjct: 118 MPNNEIARSFIKQCGVPIAAPSANISGKPSPTTAEDVFTDMNGK-ISVILDGGLCNIGIE 176 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-----ETSTPQSPGMLKSHYAP 232 ST++++ +K ILRPG T + + E E +D E + P+SPG HYAP Sbjct: 177 STVLDL-TKKPYTILRPG---FYTKEDFLKYEDEILIDDAIVTENTIPKSPGQKYKHYAP 232 Query: 233 RSQVRLRAIHVNPR-----EALIR---------------FGNVPIKNIENAIISLNLSKT 272 ++V + + + E +I+ F NV +NI L+L Sbjct: 233 NAKVVVISTKDRKKSSMEIEKIIKENKGLKIGIFKFDETFLNVESENI------LSLGSV 286 Query: 273 GKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 LKE + LF ++ D+ I GLG +I NRL+++A+ Sbjct: 287 FDLKEMSKILFKGLREFDEKNVDLIVVEGCDEKGLGFSIMNRLKKSAS 334 >gi|258621755|ref|ZP_05716786.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|258585986|gb|EEW10704.1| conserved hypothetical protein [Vibrio mimicus VM573] Length = 329 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 103/328 (31%), Positives = 167/328 (50%), Gaps = 18/328 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 Q+ ++T ++ + A + L G +AIPTETVYGLA D+ P A+++++ K RPA +PL Sbjct: 12 QQLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADASQPEAVKQIFSAKGRPANHPL 70 Query: 61 ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I H + + A+ V P + LA+ FWPGPLT++L + P+ T L+T RV Sbjct: 71 IVHFGSAEQIAEWATDVVPEAYQLAEAFWPGPLTMLLP--KAEHVSPVVTGGLETVGLRV 128 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P ++++ + +A PSAN ++S T+ + +L + ++ ++DGG + GLES Sbjct: 129 PAHPVLLEILKAHHLAVAAPSANPYKKLSPTSAQQVL-DGLNGKLAAVLDGGECQHGLES 187 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVE-LEYCVDETSTPQSPGMLKSHYAPRSQVR 237 TIV++ K R+LR G + L + E L+ V + + PG + SHY P++ R Sbjct: 188 TIVDL-TSKPFRVLRAGPITASELSAVLGQEVLQPHVHQVAV---PGNVDSHYQPKT--R 241 Query: 238 LRAIHVNPREALIRFGNVPIKNI---ENAIISLNLSKTGKLKEAAFNLFNYMKIA--DDS 292 LR I E + +V I + E +L K A+ Y +A D Sbjct: 242 LRVIDHVENELATQASDVKIALLHLSEQQASEQSLLKPMPQDAKAYGQALYRSLAEVDKW 301 Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAA 320 G I P +A+++RL RAA+ Sbjct: 302 GVDEIWLERPPQGEAWLAVHDRLRRAAS 329 >gi|169832288|ref|YP_001718270.1| Sua5/YciO/YrdC/YwlC family protein [Candidatus Desulforudis audaxviator MP104C] gi|169639132|gb|ACA60638.1| Sua5/YciO/YrdC/YwlC family protein [Candidatus Desulforudis audaxviator MP104C] Length = 358 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 104/330 (31%), Positives = 156/330 (47%), Gaps = 21/330 (6%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + A + G +A PTETVYGL ++ + A++R++ +K RP NPLI HV + Sbjct: 24 DRRTITAAAALIREGGLVAFPTETVYGLGANALDRQAVKRVFAVKGRPDDNPLIVHVGER 83 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTK 125 + + + P + L LFWPGPLTLVL + + P TA L R+P Sbjct: 84 AEISGLVRDLPPSAEKLIGLFWPGPLTLVLP--RSDRVSPAVTAGLDKVAVRMPAHPVAL 141 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LI G P+A PSAN SG+ S T H+L + I ++DGG +G+EST++++ Sbjct: 142 ALIREAGVPVAAPSANTSGRPSPTTAAHVL-EDLDGRIEAVLDGGPVPVGVESTVLDLTV 200 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQV--------- 236 V ILRPGG+ L + + + PQ+PGM HYAPR+ + Sbjct: 201 SPPV-ILRPGGVTGRQLAAVLGAVVHHPEAAPGRPQAPGMKYRHYAPRTPLVLVEGPPAA 259 Query: 237 ---RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAA---FNLFNYMKIAD 290 R+R + R + R + + + GK + L++ ++ D Sbjct: 260 VTARIRELAAAARASGERVAVLARTDTAAYYPDGPVVPCGKSNDPGSAAAALYSALRECD 319 Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAA 320 GA I + GLG A+ NRL +AAA Sbjct: 320 ALGADLILAEGLAAEGLGRAVMNRLRKAAA 349 >gi|302694065|ref|XP_003036711.1| hypothetical protein SCHCODRAFT_63438 [Schizophyllum commune H4-8] gi|300110408|gb|EFJ01809.1| hypothetical protein SCHCODRAFT_63438 [Schizophyllum commune H4-8] Length = 397 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 114/368 (30%), Positives = 163/368 (44%), Gaps = 58/368 (15%) Query: 9 SNALRKACEFLDAGL-----PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 S+A R A L P+ PTETVYGL + + +A ++ K RPA NPLI H Sbjct: 25 SDATRDALNIASHNLITLRRPVVFPTETVYGLGALALDSSAASLIFSTKGRPADNPLIVH 84 Query: 64 VSDISMVKKHASVD----PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 VS +SM+ D P L K FWPGPLT++ + + + TA T R+ Sbjct: 85 VSSMSMLHSILPPDYTFPPSYQVLMKHFWPGPLTMLFPRHAAI-VPDIITAGQDTVAIRM 143 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P + LI PLA PSAN SG+ S T +H+ + ++ +I+DGG +GLES Sbjct: 144 PSHPVARALIAVANAPLAAPSANSSGKPSPTRAEHVY-RDLGDKVDVILDGGPCGVGLES 202 Query: 179 TIVN-VQCEKKVRILRPGGLEIETLKRAISVELEYC-------------VDET--STPQS 222 T+V+ + + +R+LRPGG+ +E L+R + EL+ DE + P + Sbjct: 203 TVVDGLNADGHLRVLRPGGVTVEDLERTLREELQASGSVPRVLVHRRDYRDEAMEAAPTT 262 Query: 223 PGMLKSHYAPRSQVRLRAIHVNPREALIR----------FGNVPIKNIENAI-------- 264 PGM HY+P V L NP E R P + I + Sbjct: 263 PGMKYKHYSPSVPVILVNTLSNPSEPKQRQTIDSLVASLQARYPARPIHAGLMTPDDSRL 322 Query: 265 ---------ISLNLSKTGKLKEAAF---NLFNYMKIADDSGASSIAFSSIPNHGLGIAIN 312 IS L GK+ E A LF+ D G +I + G+A+ Sbjct: 323 AQVLHTHESISWRLFPLGKVSEPAVIAQRLFDGFLTLDREGVDAILIEGVAEEEEGLAVM 382 Query: 313 NRLERAAA 320 NR+ +AA Sbjct: 383 NRVRKAAG 390 >gi|146423277|ref|XP_001487569.1| hypothetical protein PGUG_00946 [Meyerozyma guilliermondii ATCC 6260] Length = 403 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 104/328 (31%), Positives = 164/328 (50%), Gaps = 39/328 (11%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 I PTETVYGL + + +++ +Y+ K RPA NPLI HVS IS +K+ + P + + Sbjct: 75 IGFPTETVYGLGGSALSDESVKSIYKAKNRPADNPLIVHVSSISQLKR--KILPPNYQIP 132 Query: 85 KL-------FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136 K+ FWPGPLT++L + ++ I TA T R+P + LI PLA Sbjct: 133 KVYESLIHKFWPGPLTILLPVHESSPILKFVTAGQSTFAVRIPQHPVARALIALSDTPLA 192 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN S + S T H+ + + IP I+DGG G+E T+V+ + + +LRPGG Sbjct: 193 APSANASTRPSPTIASHVY-NDLQGRIPYILDGGSCDFGVELTVVDGLVDPPM-LLRPGG 250 Query: 197 LEIETLKRAIS------VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALI 250 + +E +K V + +T ++PGM HY+P ++V L + +EA+ Sbjct: 251 VSLEEIKLVGGEPWKDVVVAKKTAGKTEAVRTPGMKYRHYSPTARVVLFVNCGDGKEAID 310 Query: 251 RFGNVPIKNIENAIISL-------NLSKTGKLKEA------------AFNLFNYMKIADD 291 + + N+++ I+L +S T KE+ + NLF Y++ D+ Sbjct: 311 NY--ISSHNLQDCKIALLKSRHFVGISSTSANKESIDRELGTDGHTISHNLFRYLREVDE 368 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAA 319 +G I I G+A+ NRL +AA Sbjct: 369 TGVDMIFVEGIEETNEGLAVMNRLSKAA 396 >gi|229520488|ref|ZP_04409913.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae TM 11079-80] gi|297578682|ref|ZP_06940610.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|229342586|gb|EEO07579.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae TM 11079-80] gi|297536276|gb|EFH75109.1| conserved hypothetical protein [Vibrio cholerae RC385] Length = 329 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 106/330 (32%), Positives = 172/330 (52%), Gaps = 22/330 (6%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 Q+ ++T ++ + A + L G +AIPTETVYGLA D+ P A+++++ K RPA +PL Sbjct: 12 QQLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPL 70 Query: 61 ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I H+ + + A+ + P + LA+ FWPGPLTL+L + P+ T L++ RV Sbjct: 71 IVHLGSAEQLSEWATDIAPEAYQLAEAFWPGPLTLLLP--KAKQVSPVVTGGLESVGIRV 128 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P +++T+ +A PSAN ++S T+ + +L + + ++DGG + GLES Sbjct: 129 PAHPVLLDILKTHRLAVAAPSANPYKKLSPTSAQQVL-DGLNGRLAAVLDGGECQHGLES 187 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVE-LEYCVDETSTPQSPGMLKSHYAPRSQVR 237 TIV++ K R+LR G + L + E L+ V + + PG + SHY P++ R Sbjct: 188 TIVDL-TSKPFRVLRAGPITASELSAVLGQEVLQPQVHQVAV---PGNVDSHYQPKT--R 241 Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLK----EA-AFNLFNYMKIA--D 290 LR I RE + + I + + +L S+ LK EA A+ Y +A D Sbjct: 242 LRVIDDLARELATQSDELRIALLH--LSALQASEQRLLKPMPQEAKAYGQALYRSLAEVD 299 Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAA 320 G I P +A+++RL RAA+ Sbjct: 300 KWGVDEIWLERPPQGEAWLAVHDRLRRAAS 329 >gi|154500228|ref|ZP_02038266.1| hypothetical protein BACCAP_03892 [Bacteroides capillosus ATCC 29799] gi|150270960|gb|EDM98234.1| hypothetical protein BACCAP_03892 [Bacteroides capillosus ATCC 29799] Length = 341 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 108/338 (31%), Positives = 168/338 (49%), Gaps = 40/338 (11%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +++A E L G + IPTETVYGL +P A+ ++ K RP NPLI HV Sbjct: 8 AQDIQEAAEILKRGGLLGIPTETVYGLGASGLDPEAVAHIFAAKGRPQDNPLILHVPSAD 67 Query: 69 MVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPC-GFTK 125 ++++ P + + LA+ FWPGP+T++ L I P + TA L T R P G T+ Sbjct: 68 WLERYCEDIPDAAYALAERFWPGPMTMI---LRRKPIVPDAVTAGLDTVGMRCPDHGVTR 124 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +I G P+A PS N SG+ S T+ +L K I I+DGG +G+ESTI+++ Sbjct: 125 AIIAAAGVPVAAPSGNTSGRPSPTSAADMLEDMDGK-IDGIVDGGPCTVGVESTIIDLTL 183 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETST--------PQSPGMLKSHYAPRSQVR 237 R+LRPGG+ +E L+ A+ E VD+ T P++PGM HYAP + V Sbjct: 184 TPP-RLLRPGGVTLEQLRDALG---EVDVDQAVTRLMGKDEHPRAPGMKYRHYAPEAPVT 239 Query: 238 LRA-----------IHVNPREALIRF----GNVPIKNIENAIISLNLSKTGKLKEAAFNL 282 + H+ P+ +I F G+ +E + +E A + Sbjct: 240 VVKGPADKTAAYIRDHLGPKSGVICFDEFAGDFSGYPVE------TMGPAADKEEQARRV 293 Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 F+ ++ D + I + G+G+A++NRL +AA Sbjct: 294 FDALRYFDSTDVEEIWSQCPDDGGIGLAVSNRLNKAAG 331 >gi|153824989|ref|ZP_01977656.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|149741501|gb|EDM55531.1| conserved hypothetical protein [Vibrio cholerae MZO-2] Length = 329 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 106/330 (32%), Positives = 172/330 (52%), Gaps = 22/330 (6%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 Q+ ++T ++ + A + L G +AIPTETVYGLA D+ P A+++++ K RPA +PL Sbjct: 12 QQLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPL 70 Query: 61 ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I H+ + + A+ + P + LA+ FWPGPLTL+L + P+ T L++ RV Sbjct: 71 IVHLGSAEQLSEWATDIAPEAYQLAEAFWPGPLTLLLP--KAKQVSPVVTGGLESVGIRV 128 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P +++T+ +A PSAN ++S T+ + +L + + ++DGG + GLES Sbjct: 129 PAHPVLLDILKTHRLAVAAPSANPYKKLSPTSAQQVL-DGLNGRLAAVLDGGECQHGLES 187 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVE-LEYCVDETSTPQSPGMLKSHYAPRSQVR 237 TIV++ K R+LR G + L + E L+ V + + PG + SHY P++ R Sbjct: 188 TIVDL-TSKPFRVLRAGPITASELSAVLGQEVLQPQVHQVAV---PGNVDSHYQPKT--R 241 Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLK----EA-AFNLFNYMKIA--D 290 LR I RE + + I + + +L S+ LK EA A+ Y +A D Sbjct: 242 LRVIDDLARELATQSDELHIALLH--LSALQASEQRLLKPMPQEAKAYGQALYRSLAEVD 299 Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAA 320 G I P +A+++RL RAA+ Sbjct: 300 KWGVDEIWLERPPQGEAWLAVHDRLRRAAS 329 >gi|229525692|ref|ZP_04415097.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae bv. albensis VL426] gi|229339273|gb|EEO04290.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae bv. albensis VL426] Length = 329 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 106/330 (32%), Positives = 172/330 (52%), Gaps = 22/330 (6%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 Q+ ++T ++ + A + L G +AIPTETVYGLA D+ P A+++++ K RPA +PL Sbjct: 12 QQLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPL 70 Query: 61 ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I H+ + + A+ + P + LA+ FWPGPLTL+L + P+ T L++ RV Sbjct: 71 IVHLGSAEQLSEWATDIAPEAYQLAEAFWPGPLTLLLP--KAKQVSPVVTGGLESVGIRV 128 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P +++T+ +A PSAN ++S T+ + +L + + ++DGG + GLES Sbjct: 129 PAHPVLLDILKTHRLAVAAPSANPYKKLSPTSAQQVL-DGLNGRLAAVLDGGECQHGLES 187 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVE-LEYCVDETSTPQSPGMLKSHYAPRSQVR 237 TIV++ K R+LR G + L + E L+ V + + PG + SHY P++ R Sbjct: 188 TIVDL-TSKPFRVLRAGPITASELSAVLGQEVLQPQVHQVAV---PGNVDSHYQPKT--R 241 Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLK----EA-AFNLFNYMKIA--D 290 LR I RE + + I + + +L S+ LK EA A+ Y +A D Sbjct: 242 LRVIDDLARELATQSNELRIALLH--LSALQASEQRLLKPMPQEAKAYGQALYRSLAEVD 299 Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAA 320 G I P +A+++RL RAA+ Sbjct: 300 KWGVDEIWLERPPQGEAWLAVHDRLRRAAS 329 >gi|327483788|gb|AEA78195.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae LMA3894-4] Length = 322 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 106/330 (32%), Positives = 172/330 (52%), Gaps = 22/330 (6%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 Q+ ++T ++ + A + L G +AIPTETVYGLA D+ P A+++++ K RPA +PL Sbjct: 5 QQLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPL 63 Query: 61 ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I H+ + + A+ + P + LA+ FWPGPLTL+L + P+ T L++ RV Sbjct: 64 IVHLGSAEQLSEWATDIAPEAYQLAEAFWPGPLTLLLP--KAKQVSPVVTGGLESVGIRV 121 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P +++T+ +A PSAN ++S T+ + +L + + ++DGG + GLES Sbjct: 122 PAHPVLLDILKTHRLAVAAPSANPYKKLSPTSAQQVL-DGLNGRLAAVLDGGECQHGLES 180 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVE-LEYCVDETSTPQSPGMLKSHYAPRSQVR 237 TIV++ K R+LR G + L + E L+ V + + PG + SHY P++ R Sbjct: 181 TIVDL-TSKPFRVLRAGPITASELSAVLGQEVLQPQVHQVAV---PGNVDSHYQPKT--R 234 Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLK----EA-AFNLFNYMKIA--D 290 LR I RE + + I + + +L S+ LK EA A+ Y +A D Sbjct: 235 LRVIDDLARELATQSDELRIALLH--LSALQASEQRLLKPMPQEAKAYGQALYRSLAEVD 292 Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAA 320 G I P +A+++RL RAA+ Sbjct: 293 KWGVDEIWLERPPQGEAWLAVHDRLRRAAS 322 >gi|15641092|ref|NP_230724.1| hypothetical protein VC1079 [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587076|ref|ZP_01676853.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|121726330|ref|ZP_01679620.1| conserved hypothetical protein [Vibrio cholerae V52] gi|147673908|ref|YP_001216548.1| hypothetical protein VC0395_A0598 [Vibrio cholerae O395] gi|153213572|ref|ZP_01948862.1| conserved hypothetical protein [Vibrio cholerae 1587] gi|153816970|ref|ZP_01969637.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|153821905|ref|ZP_01974572.1| conserved hypothetical protein [Vibrio cholerae B33] gi|227081253|ref|YP_002809804.1| hypothetical protein VCM66_1035 [Vibrio cholerae M66-2] gi|229511006|ref|ZP_04400485.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae B33] gi|229518127|ref|ZP_04407571.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae RC9] gi|229608343|ref|YP_002878991.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae MJ-1236] gi|254848208|ref|ZP_05237558.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|298498815|ref|ZP_07008622.1| conserved hypothetical protein [Vibrio cholerae MAK 757] gi|9655547|gb|AAF94238.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548711|gb|EAX58760.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|121631276|gb|EAX63649.1| conserved hypothetical protein [Vibrio cholerae V52] gi|124115908|gb|EAY34728.1| conserved hypothetical protein [Vibrio cholerae 1587] gi|126512557|gb|EAZ75151.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|126520613|gb|EAZ77836.1| conserved hypothetical protein [Vibrio cholerae B33] gi|146315791|gb|ABQ20330.1| conserved hypothetical protein [Vibrio cholerae O395] gi|227009141|gb|ACP05353.1| conserved hypothetical protein [Vibrio cholerae M66-2] gi|227012895|gb|ACP09105.1| conserved hypothetical protein [Vibrio cholerae O395] gi|229344842|gb|EEO09816.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae RC9] gi|229350971|gb|EEO15912.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae B33] gi|229370998|gb|ACQ61421.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae MJ-1236] gi|254843913|gb|EET22327.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|297543148|gb|EFH79198.1| conserved hypothetical protein [Vibrio cholerae MAK 757] Length = 329 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 106/330 (32%), Positives = 172/330 (52%), Gaps = 22/330 (6%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 Q+ ++T ++ + A + L G +AIPTETVYGLA D+ P A+++++ K RPA +PL Sbjct: 12 QQLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPL 70 Query: 61 ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I H+ + + A+ + P + LA+ FWPGPLTL+L + P+ T L++ RV Sbjct: 71 IVHLGSAEQLSEWATDIAPEAYQLAEAFWPGPLTLLLP--KAKQVSPVVTGGLESVGIRV 128 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P +++T+ +A PSAN ++S T+ + +L + + ++DGG + GLES Sbjct: 129 PAHPVLLDILKTHRLAVAAPSANPYKKLSPTSAQQVL-DGLNGRLAAVLDGGECQHGLES 187 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVE-LEYCVDETSTPQSPGMLKSHYAPRSQVR 237 TIV++ K R+LR G + L + E L+ V + + PG + SHY P++ R Sbjct: 188 TIVDL-TSKPFRVLRAGPITASELSAVLGQEVLQPQVHQVAV---PGNVDSHYQPKT--R 241 Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLK----EA-AFNLFNYMKIA--D 290 LR I RE + + I + + +L S+ LK EA A+ Y +A D Sbjct: 242 LRVIDDLARELATQSDELRIALLN--LSALQASEQRLLKPMPQEAKAYGQALYRSLAEVD 299 Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAA 320 G I P +A+++RL RAA+ Sbjct: 300 KWGVDEIWLERPPQGEAWLAVHDRLRRAAS 329 >gi|159485276|ref|XP_001700672.1| predicted protein [Chlamydomonas reinhardtii] gi|158272104|gb|EDO97910.1| predicted protein [Chlamydomonas reinhardtii] Length = 340 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 112/346 (32%), Positives = 160/346 (46%), Gaps = 48/346 (13%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A L G +AIPTETVYGLA ++ + A+ R+Y K RPA NPLI HVS ++M+ Sbjct: 1 IARAASILAEGGVVAIPTETVYGLAANALSAEAVGRVYAAKNRPADNPLIIHVSSLAML- 59 Query: 72 KHASVDPLSLHLAKLF-------WPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPC-G 122 A + P L ++ WPGPLT+ LL + + P + T L T R+P Sbjct: 60 --AGLYPPGWELPPIYEPVLRDLWPGPLTV---LLPRSPLVPDAVTCGLPTMAVRMPAHP 114 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 LI G PLA PSAN SG+ S T KH+ + IPLI+DGG G+EST+++ Sbjct: 115 VALALIAACGFPLAAPSANSSGRPSPTLAKHVAADLGGGVIPLILDGGACSCGVESTVLD 174 Query: 183 VQCEKKVRILRPGGLEIETLKRAISVE-LEYCVDET--STPQSPGMLKSHYAPRSQVRLR 239 ILRPGG+ E L +E L+ D + P +PGM HY+P + V Sbjct: 175 -ALRSPPAILRPGGVTREALVGYRGLEALQDFTDAALEAAPTTPGMKYRHYSPTAPV--- 230 Query: 240 AIHVNPREALIRFGNVPIKNIENA-------------------------IISLNLSKTGK 274 I ++P A +I L + Sbjct: 231 -ILLDPSPPAAAATAAATAAAAAAVAVAVAVAVAAATAGAGTRAVAAQRVIEYVLGHVSR 289 Query: 275 LKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 E A LF ++ D++G I + + G G+A+ NRL +AA+ Sbjct: 290 PAEVATELFAGLRALDEAGCVVIVVEGVADEGAGVAVMNRLRKAAS 335 >gi|262165359|ref|ZP_06033096.1| YrdC family protein [Vibrio mimicus VM223] gi|262025075|gb|EEY43743.1| YrdC family protein [Vibrio mimicus VM223] Length = 329 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 103/328 (31%), Positives = 166/328 (50%), Gaps = 18/328 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 Q+ ++T ++ + A + L G +AIPTETVYGLA D+ P A+++++ K RPA +PL Sbjct: 12 QQLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADASQPEAVKQIFSAKGRPANHPL 70 Query: 61 ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I H + + A+ V P + LA+ FWPGPLT++L + P+ T L+T RV Sbjct: 71 IVHFGSAEQIAEWATDVAPEAYQLAEAFWPGPLTMLLP--KAEHVSPVVTGGLETVGLRV 128 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P ++++ + +A PSAN ++S T+ + +L + ++ ++DGG + GLES Sbjct: 129 PAHPVLLEILKAHHLAVAAPSANPYKKLSPTSAQQVL-DGLNGKLAAVLDGGECQHGLES 187 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVE-LEYCVDETSTPQSPGMLKSHYAPRSQVR 237 TIV++ K R+LR G + L + E L+ V + + PG + SHY P++ R Sbjct: 188 TIVDL-TSKPFRVLRAGPITASELSAVLGQEVLQPHVHQVAV---PGNVDSHYQPKT--R 241 Query: 238 LRAIHVNPREALIRFGNVPIKNI---ENAIISLNLSKTGKLKEAAFNLFNYMKIA--DDS 292 LR I E + +V I + E L K A+ Y +A D Sbjct: 242 LRVIDHVEYELATQASDVKIALLHLSEQQASEQRLLKPMPKDAKAYGQALYRSLAEVDKW 301 Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAA 320 G I P +A+++RL RAA+ Sbjct: 302 GVDEIWLERPPQGEAWLAVHDRLRRAAS 329 >gi|86608509|ref|YP_477271.1| Sua5/YciO/YrdC/YwlC family protein [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557051|gb|ABD02008.1| Sua5/YciO/YrdC/YwlC family protein [Synechococcus sp. JA-2-3B'a(2-13)] Length = 363 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 114/364 (31%), Positives = 175/364 (48%), Gaps = 52/364 (14%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +I+S T + A L L +AIPTETVYGLA + + A+ ++ K+RP +PLI Sbjct: 4 EILSPTPEHIAVAAAALLRGQL-VAIPTETVYGLAGNGLDEQAVANIFAAKERPRFDPLI 62 Query: 62 CHVS-------------DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS 108 H+ D+S A L L FWPGPLTLVL T + L Sbjct: 63 LHLPAGVTLEQLQGWLVDVSAFTPAARA--LLGSLIDTFWPGPLTLVLPKCPT--VPDLV 118 Query: 109 TANLKTACFRVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 ++ L T RVP + L++ PLA PSANR G+IS T+ + + + + IP I+ Sbjct: 119 SSGLPTVALRVPAHPVAQALLQAVQTPLAAPSANRFGRISPTSAQAVY-AELGGRIPYIL 177 Query: 168 DGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDE------TSTPQ 221 DGG +GLEST++ + E +LRPGG+ +E L+ + + + ++ T P+ Sbjct: 178 DGGECAVGLESTVLKLSPEGIPTLLRPGGIPLEALEAHLGLPIRLPPEQAPKDGTTGPPE 237 Query: 222 SPGMLKSHYAPRSQVRLRAI---HVNPRE--------------ALIRFGNVPIKNIENAI 264 +PG L SHYAP +RL + P + ++ F P + + N + Sbjct: 238 APGRLSSHYAPSKPLRLLPTPFAQLQPGDWQQVQHLTTGHSHLGILSFATDP-QALLNTL 296 Query: 265 ------ISLNLSKTGK-LKEAAFNLFNYMKIADDSGASSIAFSSIP-NHGLGIAINNRLE 316 I+ +L G K AA LF ++ D+ A+ + P + GLG A+ +RL Sbjct: 297 SRHWPGITFSLECLGSDPKAAARALFASLRRLDEGDATLLLAEPPPISTGLGYAMMDRLR 356 Query: 317 RAAA 320 RA++ Sbjct: 357 RASS 360 >gi|50552650|ref|XP_503735.1| YALI0E09449p [Yarrowia lipolytica] gi|49649604|emb|CAG79325.1| YALI0E09449p [Yarrowia lipolytica] Length = 373 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 101/305 (33%), Positives = 153/305 (50%), Gaps = 36/305 (11%) Query: 5 SITDSN---ALRKACEFLDAG-LPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 SI+DS AL+ A L P+A PTETVYGL + + +++ +Y K RPA NPL Sbjct: 25 SISDSETLEALKHASHVLQTTHEPVAFPTETVYGLGASALSTESVKSIYAAKNRPADNPL 84 Query: 61 ICHVSDISMVK----KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 I HVS + +K K + + L + FWPGPLT++L L S +D+ P T T Sbjct: 85 IVHVSSLDQLKRKILKGREIPDVYTPLIEKFWPGPLTILLPLDSDSDVSPACTVGQPTVA 144 Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R+P + LI PLA PSAN S + S T H+ + IPLI+DGG +G Sbjct: 145 VRMPDHPVARSLIALSDLPLAAPSANASTRPSPTTADHVY-HDLQGRIPLILDGGACHVG 203 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV--------DETSTPQSPGMLK 227 +EST+V+ + + +LRPGG+ +E ++ + + + DE ++PGM Sbjct: 204 VESTVVDGLSDPPM-LLRPGGVSLEQIREHGGEKWKNVLVGRANAKTDEAV--RTPGMKY 260 Query: 228 SHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMK 287 HY+P +V L FG V K++E A+ S G+L+ L + Sbjct: 261 KHYSPTGKVVL-------------FGPVSDKSVEQAVKEYVTS--GELEGKKIGLLTSLT 305 Query: 288 IADDS 292 +++D+ Sbjct: 306 LSNDT 310 >gi|119953512|ref|YP_945721.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia turicatae 91E135] gi|119862283|gb|AAX18051.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia turicatae 91E135] Length = 336 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 104/332 (31%), Positives = 165/332 (49%), Gaps = 27/332 (8%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I + ++KA + + AG + PTETVYG+ ++ N AIR ++ +K+RP NPLI HV Sbjct: 8 IIEQLEIKKAAKLIRAGELVVFPTETVYGIGANAYNDDAIRMIFLVKRRPITNPLIVHVE 67 Query: 66 DISMVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 I +K+ P S L L + F PGPLT +L + I + L + R+P Sbjct: 68 SIEKIKELVEYIPKSALILMQKFTPGPLTFILK--NAGKISNFISGGLDSIAVRIPSEPV 125 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI-----SKIGLES 178 KLI+ G P+A PSAN S + S TN + + +E+ ++ G I SKIG+ES Sbjct: 126 ALKLIKMSGVPIAAPSANLSRRPSATNFEMAI-----RELDGLVKGIIKKNEESKIGIES 180 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAI--SVELEYCVDETSTPQSPGMLKSHYAPRSQV 236 T++ + + ILRPG + E +++ + +EY V + +SPG L HY PR V Sbjct: 181 TVIGFDSKGNISILRPGSITKEMIEKELKGKFRVEYSVGKEMLSKSPGNLLEHYKPRIPV 240 Query: 237 RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKT---------GKLKEAAFNLFNYMK 287 L N R+ R + + ++ + S +K+ L+E A N++ Sbjct: 241 YLFKQKDNIRQYASR-QDTKVLIMKATLNSYWFNKSWNMNNICVFNTLEEYAKNIYKVF- 298 Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 + + I + N LG +INNRL++A+ Sbjct: 299 VESEKTYKQILAEFVDNSQLGYSINNRLKKAS 330 >gi|153828152|ref|ZP_01980819.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|148876394|gb|EDL74529.1| conserved hypothetical protein [Vibrio cholerae 623-39] Length = 329 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 106/330 (32%), Positives = 172/330 (52%), Gaps = 22/330 (6%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 Q+ ++T ++ + A + L G +AIPTETVYGLA D+ P A+++++ K RPA +PL Sbjct: 12 QQLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPL 70 Query: 61 ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I H+ + + A+ + P + LA+ FWPGPLTL+L + P+ T L++ RV Sbjct: 71 IVHLGSAEQLSEWATDIAPEAYQLAEAFWPGPLTLLLP--KAKQVSPVVTGGLESVGIRV 128 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P +++T+ +A PSAN ++S T+ + +L + + ++DGG + GLES Sbjct: 129 PAHPVLLDILKTHRLAVAAPSANPYKKLSPTSAQQVL-DGLNGRLAAVLDGGECQHGLES 187 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVE-LEYCVDETSTPQSPGMLKSHYAPRSQVR 237 TIV++ K R+LR G + L + E L+ V + + PG + SHY P++ R Sbjct: 188 TIVDL-TSKPFRVLRAGPITASELSAVLGQEVLQPQVHQVAV---PGNVDSHYQPKT--R 241 Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLK----EA-AFNLFNYMKIA--D 290 LR I RE + + I + + +L S+ LK EA A+ Y +A D Sbjct: 242 LRVIDDLARELATQSDELRIALLH--LSALQASEQRLLKPMPQEAKAYGQALYRSLAEVD 299 Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAA 320 G I P +A+++RL RAA+ Sbjct: 300 KWGVDEIWLERPPEGEAWLAVHDRLRRAAS 329 >gi|218135384|ref|ZP_03464188.1| hypothetical protein BACPEC_03289 [Bacteroides pectinophilus ATCC 43243] gi|217990769|gb|EEC56780.1| hypothetical protein BACPEC_03289 [Bacteroides pectinophilus ATCC 43243] Length = 353 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 112/351 (31%), Positives = 176/351 (50%), Gaps = 42/351 (11%) Query: 2 QIMSITDSNAL--RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 QI +AL KA + L +G +A PTETVYGL D+ N A R++Y K RP+ NP Sbjct: 7 QITGNESEDALIYEKASKILRSGGLVAFPTETVYGLGGDALNKDASRKIYAAKGRPSDNP 66 Query: 60 LICHVSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 LI H++D + + K A P +L LA F PGP+T++L + +T L T R Sbjct: 67 LIVHIADRNDLYKLAEEVPETALKLADAFMPGPITIILKKKEC--VPGETTGGLDTVAIR 124 Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 +P ++I G +A PSAN SG+ S T K+++ + ++ +II IG+E Sbjct: 125 MPRHPVAARMIRESGVYVAAPSANTSGRPSPTKAKYVIED-LNGKVDMIIADDTVDIGIE 183 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCVDETS------TPQSPGMLKSHY 230 STIV++ E+ +LRPG + +E L++ + VE++ V+ + P++PGM HY Sbjct: 184 STIVDL-SEEVPTVLRPGYITLEMLRKVLGRVEIDKAVEAGNILASDIAPKAPGMKYRHY 242 Query: 231 APRSQVRLRAIHVNPREALIRFGNVPIKNIENA-------------------IISLNLSK 271 AP++++ + + N + + K +E+ + SL L Sbjct: 243 APKAELTI--VSGNEDSVAQKINELVSKRLEDGAKVGIMTTDENIYRYTKGEVRSLGL-- 298 Query: 272 TGKLKEA--AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + EA A NLF ++ DD GA I + N +G A+ NRL +AA Sbjct: 299 --RADEATVAKNLFAVLREFDDIGAEYIYSEAFANSNVGQAVMNRLIKAAG 347 >gi|255745495|ref|ZP_05419443.1| YrdC family protein [Vibrio cholera CIRS 101] gi|262158430|ref|ZP_06029546.1| YrdC family protein [Vibrio cholerae INDRE 91/1] gi|262170292|ref|ZP_06037979.1| YrdC family protein [Vibrio cholerae RC27] gi|255736570|gb|EET91967.1| YrdC family protein [Vibrio cholera CIRS 101] gi|262021307|gb|EEY40021.1| YrdC family protein [Vibrio cholerae RC27] gi|262029871|gb|EEY48519.1| YrdC family protein [Vibrio cholerae INDRE 91/1] Length = 322 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 106/330 (32%), Positives = 172/330 (52%), Gaps = 22/330 (6%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 Q+ ++T ++ + A + L G +AIPTETVYGLA D+ P A+++++ K RPA +PL Sbjct: 5 QQLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPL 63 Query: 61 ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I H+ + + A+ + P + LA+ FWPGPLTL+L + P+ T L++ RV Sbjct: 64 IVHLGSAEQLSEWATDIAPEAYQLAEAFWPGPLTLLLP--KAKQVSPVVTGGLESVGIRV 121 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P +++T+ +A PSAN ++S T+ + +L + + ++DGG + GLES Sbjct: 122 PAHPVLLDILKTHRLAVAAPSANPYKKLSPTSAQQVL-DGLNGRLAAVLDGGECQHGLES 180 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVE-LEYCVDETSTPQSPGMLKSHYAPRSQVR 237 TIV++ K R+LR G + L + E L+ V + + PG + SHY P++ R Sbjct: 181 TIVDL-TSKPFRVLRAGPITASELSAVLGQEVLQPQVHQVAV---PGNVDSHYQPKT--R 234 Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLK----EA-AFNLFNYMKIA--D 290 LR I RE + + I + + +L S+ LK EA A+ Y +A D Sbjct: 235 LRVIDDLARELATQSDELRIALLN--LSALQASEQRLLKPMPQEAKAYGQALYRSLAEVD 292 Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAA 320 G I P +A+++RL RAA+ Sbjct: 293 KWGVDEIWLERPPQGEAWLAVHDRLRRAAS 322 >gi|149183887|ref|ZP_01862278.1| SUA5 protein [Bacillus sp. SG-1] gi|148848406|gb|EDL62665.1| SUA5 protein [Bacillus sp. SG-1] Length = 348 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 103/329 (31%), Positives = 169/329 (51%), Gaps = 32/329 (9%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 +A +FL +A PTETVYGL ++++ A+ +++ K RP+ NPLI H+S+ + + Sbjct: 23 EASQFLKDNEVVAFPTETVYGLGANAKSDEAVDKIFAAKGRPSDNPLIVHISNSEQLNEL 82 Query: 74 ASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY 131 P + + + FWPGPLT++ + TA L + R+P LIE Sbjct: 83 VEEIPEAAQIMMEHFWPGPLTIIFKKKEGV-LSEKVTAGLDSVGIRMPDHPVALALIEAA 141 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 P+A PSAN SG+ S T H+ + + I +I+GG + +G+EST+V+ E V I Sbjct: 142 NLPIAAPSANVSGRPSPTTAHHV-TQDLDGRISGVINGGETGVGVESTVVDCTSEIPV-I 199 Query: 192 LRPGGLEIETLKRA---ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL--------RA 240 LRPGG+ E L+ A + V+ E P+SPGM +HYAP + + L ++ Sbjct: 200 LRPGGVTKEQLEEAAGPVLVDPSLAKGE-GAPKSPGMKYTHYAPDAPLILLDGKREWIQS 258 Query: 241 IHVNPREALIRFG------NVPIKNIENAIIS---LNLSKTGKLKEAAFNLFNYMKIADD 291 + R+A ++ G N + ++S L+LS A +L++ ++ ++ Sbjct: 259 LVEEKRQAGMKVGILTTEENARFYQADKILVSGSRLDLSTV------AHSLYDVLRSFNE 312 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320 S I + P G+G+AI NRL++AA Sbjct: 313 SDVDIIFSETFPQEGVGMAIMNRLQKAAG 341 >gi|257888291|ref|ZP_05667944.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 1,141,733] gi|257824345|gb|EEV51277.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 1,141,733] Length = 311 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 98/308 (31%), Positives = 159/308 (51%), Gaps = 22/308 (7%) Query: 32 VYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPG 90 +YGL ++ P +++++ +K RP NPLI HV+ VK++ + P + + K FWPG Sbjct: 1 MYGLGANALLPNTVKKVFSVKGRPQDNPLIVHVASFEQVKEYVDNFHPETEKIVKNFWPG 60 Query: 91 PLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISIT 149 PLTL+ + T + + T L TA FR+P T ++IE G PL PSAN SG+ S T Sbjct: 61 PLTLIFKIKKDT-LPSVVTGGLSTAAFRMPDNKKTLEVIELSGVPLVGPSANTSGKPSPT 119 Query: 150 NVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV-RILRPGGLEIETLKRAISV 208 H+ + +I IID G ++IG+EST++++ + ILRPG + E ++ I Sbjct: 120 TADHVF-HDLQGKITGIIDDGATRIGVESTVLDLSDPTAMPMILRPGAVTKEQIEAVIES 178 Query: 209 EL---EYCVDETSTPQSPGMLKSHYAPRSQVRL-------RAIHVNPREALIRFGNVPIK 258 + ++ V E TP++PGM HY+P ++V + A+ + IR G + Sbjct: 179 PVAIDQHLVKENETPKAPGMKYKHYSPDTRVLMVREGDWSTAVQW-AKNKKIRVGVIASP 237 Query: 259 NIENAI----ISLNLSKTGKLKEAAFNLFNYMKIADDS--GASSIAFSSIPNHGLGIAIN 312 I + + ++ + ++ AA LF ++ D+ G I P GLG A Sbjct: 238 EISDQVRTDTAAVYMYNDNSVEAAAKGLFAGLRGLDEPTLGLDLIFVQVYPETGLGNAYM 297 Query: 313 NRLERAAA 320 NRL++AA Sbjct: 298 NRLKKAAG 305 >gi|262171882|ref|ZP_06039560.1| YrdC family protein [Vibrio mimicus MB-451] gi|261892958|gb|EEY38944.1| YrdC family protein [Vibrio mimicus MB-451] Length = 322 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 101/328 (30%), Positives = 166/328 (50%), Gaps = 18/328 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 Q+ ++T ++ + A + L G +AIPTETVYGLA D+ P A+++++ K RPA +PL Sbjct: 5 QQLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADASQPEAVKQIFSAKGRPANHPL 63 Query: 61 ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I H + + A+ V P + LA+ FWPGPLT++L + P+ T L+T RV Sbjct: 64 IVHFGSAEQIAEWATDVVPEAYQLAEAFWPGPLTMLLP--KAEHVSPVVTGGLETVGLRV 121 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P ++++ + +A PSAN ++S T+ + +L + ++ ++DGG + GLES Sbjct: 122 PAHPVLLEILKAHHLAVAAPSANPYKKLSPTSAQQVL-DGLNGKLAAVLDGGECQHGLES 180 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVE-LEYCVDETSTPQSPGMLKSHYAPRSQVR 237 TIV++ K R+LR G + L + E L+ V + + PG + SHY P++ R Sbjct: 181 TIVDL-TSKPFRVLRAGPITASELSAVLGQEVLQPHVHQVAV---PGNVDSHYQPKT--R 234 Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGK-----LKEAAFNLFNYMKIADDS 292 LR I E + +V I + + N + K K L+ + D Sbjct: 235 LRVIDHVENELATQASDVKIALLHLSEQQANEQRLLKPMPQDAKAYGQALYRSLAEVDKW 294 Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAA 320 G I P +A+++RL RAA+ Sbjct: 295 GVDEIWLERPPQGEAWLAVHDRLRRAAS 322 >gi|330719387|ref|ZP_08313987.1| putative translation factor [Leuconostoc fallax KCTC 3537] Length = 337 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 100/323 (30%), Positives = 161/323 (49%), Gaps = 24/323 (7%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A + L G +A PTETVYGL + + A+R+++ K RP+ NPLI V+D +MV++ A Sbjct: 16 AGKLLSQGEVVAFPTETVYGLGAVATDEVAVRKVFTAKGRPSDNPLIVTVADKAMVQQFA 75 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133 + +S L FWPG LT++L + + T L T FR+P + +I Sbjct: 76 VENDMSQKLMAAFWPGSLTIILPMRAQA-FSMTVTGGLNTVAFRLPDNEVARAVIRAAKA 134 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 P+ PSAN SG+ S T +H+ + +I I+D G + +G+EST+++V ILR Sbjct: 135 PIVGPSANTSGKPSPTTAQHVW-HDMAGKIAAIVDDGPTTVGVESTVIDVSGNVPT-ILR 192 Query: 194 PGGLEIETLKRAISVELEYCVDETS--------TPQSPGMLKSHYAPRSQVRLRAIHVNP 245 PG + E L ++V + D T+ TP++PGM HYAP V + ++ Sbjct: 193 PGAITQEQL---VAVLAQPVHDATTTESVASDVTPKAPGMKYRHYAPDKHVVMFD-ELDA 248 Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGK-------LKEAAFNLFNYMKIADDS-GASSI 297 + + + + ++ I+ K+ + L+ A LF+ ++ DD +I Sbjct: 249 VDLAQKLQDNDVVMAQDRILQAMAIKSQQAWSLGDSLESATEQLFSGLRFYDDQPKVGTI 308 Query: 298 AFSSIPNHGLGIAINNRLERAAA 320 + GLG A NNRL +AA Sbjct: 309 YVQKMIPVGLGKAYNNRLAKAAG 331 >gi|229505324|ref|ZP_04394834.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae BX 330286] gi|229357547|gb|EEO22464.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae BX 330286] Length = 336 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 104/316 (32%), Positives = 164/316 (51%), Gaps = 21/316 (6%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A + L G +AIPTETVYGLA D+ P A+++++ K RPA +PLI H+ + + A Sbjct: 32 AAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPLIVHLGSAEQLSEWA 91 Query: 75 S-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132 + + P + LA+ FWPGPLTL+L + P+ T L++ RVP +++T+ Sbjct: 92 TDIAPEAYQLAEAFWPGPLTLLLP--KAKQVSPVVTGGLESVGIRVPAHPVLLDILKTHR 149 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192 +A PSAN ++S T+ + +L + + ++DGG + GLESTIV++ K R+L Sbjct: 150 LAVAAPSANPYKKLSPTSAQQVL-DGLNGRLAAVLDGGECQHGLESTIVDL-TSKPFRVL 207 Query: 193 RPGGLEIETLKRAISVE-LEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIR 251 R G + L + E L+ V + + PG + SHY P++ RLR I RE + Sbjct: 208 RAGPITASELSAVLGQEVLQPQVHQVAV---PGNVDSHYQPKT--RLRVIDDLARELATQ 262 Query: 252 FGNVPIKNIENAIISLNLSKTGKLK----EA-AFNLFNYMKIA--DDSGASSIAFSSIPN 304 + I + + +L S+ LK EA A+ Y +A D G I P Sbjct: 263 SDELRIALLN--LSALQASEQRLLKPMPQEAKAYGQALYRSLAEVDKWGVDEIWLERPPQ 320 Query: 305 HGLGIAINNRLERAAA 320 +A+++RL RAA+ Sbjct: 321 GEAWLAVHDRLRRAAS 336 >gi|146304759|ref|YP_001192075.1| translation factor SUA5 [Metallosphaera sedula DSM 5348] gi|145703009|gb|ABP96151.1| translation factor SUA5 [Metallosphaera sedula DSM 5348] Length = 350 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 105/334 (31%), Positives = 161/334 (48%), Gaps = 40/334 (11%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +RKA E + +G +A PTETVYGL ++ +P A ++++ K+RP NPLI H++D+S ++ Sbjct: 16 IRKAAEVIRSGGLVAFPTETVYGLGGNALDPKAAEKVFKAKRRPMDNPLIVHIADLSQLE 75 Query: 72 KHASVD--PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + SVD P L LA+ WPGPLT +L + +T L T R+P +LI Sbjct: 76 E-VSVDVPPEVLDLAQRVWPGPLTFILKRNPRVPLE--TTGGLDTVAVRMPAHPIALQLI 132 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 G P+A PSAN + + S T +H++ + + ++IDGG + G+ESTI+N+ Sbjct: 133 RESGVPIAAPSANLATKPSPTLAEHVI-QDLDGSVDVVIDGGETFFGVESTIINLTVSPP 191 Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQ------------SPGMLKSHYAPRSQV 236 V +LRPG +E EL + E P+ +PGM HYAP + Sbjct: 192 V-LLRPGPFTVE--------ELNSLLGEVVVPKEVAEGGQFNVALAPGMKYKHYAPSKPL 242 Query: 237 RLRAIHVNPREALIRF----------GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYM 286 L +E + R +++ I L S+ L A NLF Sbjct: 243 YLVEKKSIFKEVVKRLRQKKKVAALCSQETCADVDEPKIILGTSEN--LYTVAKNLFKSF 300 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + D P G+G+AI NR ++A+A Sbjct: 301 RQLDTLDVDLGVMEPFPERGIGLAIMNRAKKASA 334 >gi|329766034|ref|ZP_08257595.1| Sua5/YciO/YrdC/YwlC family protein [Candidatus Nitrosoarchaeum limnia SFB1] gi|329137489|gb|EGG41764.1| Sua5/YciO/YrdC/YwlC family protein [Candidatus Nitrosoarchaeum limnia SFB1] Length = 346 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 110/327 (33%), Positives = 161/327 (49%), Gaps = 29/327 (8%) Query: 16 CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75 L G +A PTETVYGL D NP AI+++++ K RP+ NPLI H+S+ VKK+ Sbjct: 22 VSILRKGGLVAFPTETVYGLGADGLNPKAIKKIFQAKNRPSDNPLIFHISNKKDVKKYTK 81 Query: 76 VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGH 133 P + L + FWPGPLTL+L ++ I ++T L T R+P LI + G+ Sbjct: 82 DIPATAEKLIEKFWPGPLTLILK--KSSIIPKIATGGLNTIAIRMPSHKIALSLINSLGN 139 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 P+ PSAN G+ S T KH+L + +I +IDG S IG+ESTI+++ K ILR Sbjct: 140 PIVAPSANLFGKPSPTLAKHVL-YDLDGKIDAVIDGRNSVIGIESTILDLTT-KTPTILR 197 Query: 194 PGGLEIETLKRAISVELEY------CVDETSTPQSPGMLKSHYAPRSQVRL--------- 238 PG + E LK + +++Y + +SPGM HY+P +++ L Sbjct: 198 PGKISYEELKNLLK-KVKYHPSLLGKKSKLLKVKSPGMKYKHYSPNAKIILVEGNTKNTQ 256 Query: 239 RAIH-----VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293 + IH ++ LI N + + T L A NL+ + DD Sbjct: 257 KKIHELIKKFQQQKKLIGIINNKNIKKIPFVKFKFIGTTKNL--IASNLYKSFRELDDQK 314 Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAA 320 I + LG AI NRL +AA+ Sbjct: 315 VDVIIMREVDTSNLGFAIMNRLRKAAS 341 >gi|322493293|emb|CBZ28578.1| conserved hypothetical protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 382 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 118/371 (31%), Positives = 179/371 (48%), Gaps = 58/371 (15%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 QI+ T + LR+A + L G +AIPTETVYGL ++ +A +R+Y +K RPA++PLI Sbjct: 3 QIIGTTPED-LRRAADALLEGKLVAIPTETVYGLGGNALIESAGKRIYAVKGRPAIDPLI 61 Query: 62 CHVSDISMVKK-------HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT 114 CHV + V+K +V+ L+ + WPGPLT+V ++ + T Sbjct: 62 CHVYSLDGVRKLWDLKWDEGAVE-LACTIGAALWPGPLTIVCK--ASPSLPGCVTGGSGY 118 Query: 115 ACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP-LIIDGGIS 172 R+P T KL+E P+A PSAN G +S T +H+ ++ LIIDGG S Sbjct: 119 VGARIPNNPITLKLLEMVDVPVAAPSANTFGHVSPTTAQHVYDDLAARDPELLIIDGGQS 178 Query: 173 KIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS-------VEL---EYCVDETSTPQ- 221 IG+EST+ V+ + V +LR G + + + RAI+ VE+ D T TP Sbjct: 179 AIGIESTVAKVESKDLVVVLRRGRITVSMIHRAIADSYPQTRVEIRDTRIMYDSTKTPMV 238 Query: 222 SPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPI-----KNI----ENAIISLN---- 268 SPG L +HY+P L + AL +VP+ K++ E ++ N Sbjct: 239 SPGQLLTHYSPSVPSSL--LTPGSLAALTAAADVPVYVHRGKDVVPLCETIVLDFNGYLS 296 Query: 269 -----------LSKTGKLKEAAFNLFNYMKIADD-SGASSIAFSSI-------PNHGLGI 309 +S G +E F +F+ ++ + GA S+ F I P L Sbjct: 297 RFRDTCLSYHDISPDGNPEEGCFAVFDALRATETVKGAKSLVFPLISEWPHDKPKEDLLA 356 Query: 310 AINNRLERAAA 320 A+ +RL RAA+ Sbjct: 357 AMEDRLFRAAS 367 >gi|270158487|ref|ZP_06187144.1| Sua5/YciO/YrdC family protein [Legionella longbeachae D-4968] gi|289166681|ref|YP_003456819.1| translation initiation protein [Legionella longbeachae NSW150] gi|269990512|gb|EEZ96766.1| Sua5/YciO/YrdC family protein [Legionella longbeachae D-4968] gi|288859854|emb|CBJ13840.1| putative translation initiation protein [Legionella longbeachae NSW150] Length = 321 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 102/325 (31%), Positives = 159/325 (48%), Gaps = 29/325 (8%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD---IS 68 + +A L G P+AIPTETVYGLA N AI+ ++ IK RP +PLI HV++ + Sbjct: 8 IDRAIHDLQQGKPVAIPTETVYGLAAPINNEQAIKAVFAIKNRPLNHPLIIHVAENWALD 67 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 ++ K + + L K FWPGPLTLV I PL T T R P ++L Sbjct: 68 LLVK--DIPAYAQQLIKKFWPGPLTLVFH-CKQDQISPLITGGQTTVAIRCPAHPIAQEL 124 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ G PL PSAN G++S T +H+ S +E+ I+DGG +G+ESTI++ + Sbjct: 125 LKKLGVPLVAPSANPFGKVSPTTAEHVSESFYNQEL-TILDGGRCTVGIESTIIDATDPQ 183 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 +ILR G ++ + + I++ + ++ + PG L SHY P+ ++ + + Sbjct: 184 NYQILRHGIIDEKAIAELIALP---SLRGENSLRVPGKLDSHYQPQKKL----YYFDSYN 236 Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKE-----------AAFNLFNYMKIADDSGASS 296 L F KN +N + + G +E AF+L+ ++ AD S A Sbjct: 237 LLTHFCQ---KNGDNIYVIASKKPMGMREEYFHLLEDNPEKVAFDLYYQLRKADASNAEV 293 Query: 297 IAFSSIPNHGLGIAINNRLERAAAP 321 I P G + R+ +A AP Sbjct: 294 IVIELPPATGAWQGVRERILKAGAP 318 >gi|315925283|ref|ZP_07921495.1| Sua5/YciO/YrdC/YwlC family protein [Pseudoramibacter alactolyticus ATCC 23263] gi|315621404|gb|EFV01373.1| Sua5/YciO/YrdC/YwlC family protein [Pseudoramibacter alactolyticus ATCC 23263] Length = 346 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 99/333 (29%), Positives = 168/333 (50%), Gaps = 26/333 (7%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ + + + G + PTETVYGL ++ +P AI +++E K RPA NPLI H++D Sbjct: 15 AQSIARCGQIIRDGGTVVFPTETVYGLGANAFDPAAIAKIFEAKGRPADNPLIVHIADWD 74 Query: 69 MVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + + A V + LA+ +WPGP+T++ L + + TA L T R P + ++ Sbjct: 75 QISELVAEVPEKARQLAEAYWPGPMTMI--LRRSAAVPDAVTAGLGTVGIRFPSNPYARQ 132 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LI G P+A PSAN SG+ S T +H+L + +++ I+ S +GLEST++++ Sbjct: 133 LIVASGVPIAAPSANISGRPSPTRGRHVL-EDMLEKVDAILVADESDVGLESTVIDMTSI 191 Query: 187 KKVRILRPGGLEIETLKRAIS-VELEYCVDETSTPQ---SPGMLKSHYAPRSQVRL---- 238 +LRPGG+ + ++R I V + P+ SPGM HYAP ++ + Sbjct: 192 PPT-VLRPGGITVADIERVIGPVAVSPNTTRPVIPEEVRSPGMKYRHYAPHGRMVIARGS 250 Query: 239 ---RAIHVNPREALIRFGNVP--------IKNIENAIISLNLSKTGKLKEAAFNLFNYMK 287 +A +N ++ + P + + +I L+L NLF+ ++ Sbjct: 251 DGEKAAKINAAIDGLKAQDKPAVLATDETLGHYRRGMI-LSLGSQTDPAAMGHNLFDCLR 309 Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 DD GA+ I +P +A+ NRL +AA Sbjct: 310 AFDDLGATHIFAEDVPVGNDTLALINRLYKAAG 342 >gi|313895787|ref|ZP_07829341.1| Sua5/YciO/YrdC/YwlC family protein [Selenomonas sp. oral taxon 137 str. F0430] gi|312975212|gb|EFR40673.1| Sua5/YciO/YrdC/YwlC family protein [Selenomonas sp. oral taxon 137 str. F0430] Length = 355 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 108/344 (31%), Positives = 168/344 (48%), Gaps = 30/344 (8%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +I+S + A + G +A PTETVYGL + A R+Y K RP+ NPLI Sbjct: 4 KIISPVREADIAYAARMIRDGALVAFPTETVYGLGASGLDAAACARIYAAKGRPSDNPLI 63 Query: 62 CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 H++D+SM A ++ P + HL F PGP+T++L I + T L T R P Sbjct: 64 LHIADLSMAADAARTIPPAAAHLLTAFAPGPITVILP--KAAHIPDIVTGGLSTVGVRCP 121 Query: 121 C-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + LI G P+A PSAN SG+ S T +++ + IP I+DGG + G+EST Sbjct: 122 DHDIARALIRAAGVPVAAPSANTSGRPSPTTAV-MVADDLAGRIPCILDGGACRWGVEST 180 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETST-----PQSPGMLKSHYAPRS 234 IV+ + V +LRPG + E + + +E VD T P++PGM HYAPR+ Sbjct: 181 IVDCTEDGVVTVLRPGAVTREMIAAELP-HMEVRVDPALTAADAVPRAPGMKYRHYAPRA 239 Query: 235 ------------QVRLRAIHVNPREALIRFGNVPIKNIENAIISL----NLSKTG-KLKE 277 LRA + R + G + + A+ + + G + + Sbjct: 240 PLAVYTGAPDAVAAALRAEILRQRAEGTQIGLIAFRETCAALTGIISPAYVYACGVRGDD 299 Query: 278 AAFN--LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 AA+ L++ ++ D++ A ++ HGLG+A+ NRL +A+ Sbjct: 300 AAYANCLYDALRRFDNTDAGALLAEGTDEHGLGLAVMNRLRKAS 343 >gi|302872090|ref|YP_003840726.1| Sua5/YciO/YrdC/YwlC family protein [Caldicellulosiruptor obsidiansis OB47] gi|302574949|gb|ADL42740.1| Sua5/YciO/YrdC/YwlC family protein [Caldicellulosiruptor obsidiansis OB47] Length = 348 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 112/334 (33%), Positives = 163/334 (48%), Gaps = 25/334 (7%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L KA L G +A PTETVYGL ++ A+ +++ K RP NPLI H+S Sbjct: 12 DYEKLEKAALILREGGLVAFPTETVYGLGANALLKDAVDKIFWAKGRPQDNPLIVHISSK 71 Query: 68 SMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 M++ A + ++ L + FWPGPLT+VL + TA L T R+P Sbjct: 72 EMLEMCAEITDEKVYVLIERFWPGPLTIVLP--KKNVVADNVTAGLSTVGVRMPANKIAL 129 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +LI G P+A PSAN SG+ S T KH++ + K + +IIDGG GLEST+V++ Sbjct: 130 ELIRLSGVPVAAPSANVSGKPSPTEAKHVIEDLMNK-VDVIIDGGKCSFGLESTVVDLSG 188 Query: 186 EKKVRILRPGGLEIETLKRAI-SVELEYCVDE---TSTPQSPGMLKSHYAPRSQVRLRAI 241 + V ILRPG + LK + ++E V E S P+SPGM HYAP +++ + Sbjct: 189 GEAV-ILRPGAISYYALKEVLGNIEYSKAVVEGLSGSVPRSPGMKYKHYAPDAKLIIVKG 247 Query: 242 HVNPREALIRF--GNVPIKNIENAIISL-----NLSKTGKL--------KEAAFNLFNYM 286 ++ R I + +K I+ N KL KE NLF+ + Sbjct: 248 RIDKRIDKINEMKKKLELKGYRVGILCFYETAHNFDSQYKLILGSMFDAKECGRNLFSLL 307 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + + G I + +A+ NRL +AAA Sbjct: 308 RKFNQLGVDYILCEWGEFNLEFLALENRLYKAAA 341 >gi|254225478|ref|ZP_04919088.1| conserved hypothetical protein [Vibrio cholerae V51] gi|125621948|gb|EAZ50272.1| conserved hypothetical protein [Vibrio cholerae V51] Length = 329 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 105/330 (31%), Positives = 172/330 (52%), Gaps = 22/330 (6%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 Q+ ++T ++ + A + L G +AIPTETVYGLA D+ P A+++++ K RPA +PL Sbjct: 12 QQLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPL 70 Query: 61 ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I H+ + + A+ + P + LA+ FWPGPLTL+L + P+ T L++ RV Sbjct: 71 IVHLGSAEQLSEWATDIAPEAYQLAEAFWPGPLTLLLP--KAKQVSPVVTGGLESVGIRV 128 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P +++T+ +A PSAN ++S T+ + +L + + ++DGG + GLES Sbjct: 129 PAHPVLLDILKTHRLAVAAPSANPYKKLSPTSAQQVL-DGLNGRLAAVLDGGECQHGLES 187 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVE-LEYCVDETSTPQSPGMLKSHYAPRSQVR 237 TIV++ K R+LR G + L + E ++ V + + PG + SHY P++ R Sbjct: 188 TIVDL-TSKPFRVLRAGPITASELSAVLGQEVMQPQVHQVAV---PGNVDSHYQPKT--R 241 Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLK----EA-AFNLFNYMKIA--D 290 LR I RE + + I + + +L S+ LK EA A+ Y +A D Sbjct: 242 LRVIDDLARELATQSDELRIALLH--LSALQASEQRLLKPMPQEAKAYGQALYRSLAEVD 299 Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAA 320 G I P +A+++RL RAA+ Sbjct: 300 KWGVDEIWLERPPQGEAWLAVHDRLRRAAS 329 >gi|330999106|ref|ZP_08322827.1| Sua5/YciO/YrdC/YwlC family protein [Parasutterella excrementihominis YIT 11859] gi|329575495|gb|EGG57034.1| Sua5/YciO/YrdC/YwlC family protein [Parasutterella excrementihominis YIT 11859] Length = 334 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 108/329 (32%), Positives = 157/329 (47%), Gaps = 23/329 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L KA + L+AG +AIPTETVYGLA D+ N A++ +Y K RPA +PLI HV+ + Sbjct: 5 LEKAVKILEAGGLVAIPTETVYGLAADAENEAAVKSIYAAKNRPATHPLIVHVASAEALP 64 Query: 72 KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-----GFTK 125 A P L + FWPGPLT+VL + T T R P K Sbjct: 65 YWAREIPEDAKKLTEAFWPGPLTIVLK--RSAHAKDFVTGGQDTVALRCPSHPLVHELLK 122 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHI---LSSSICKEIPLIIDGGISKIGLESTIVN 182 + G LA PSAN G+IS T +H+ L + I+DGG +G+ESTI++ Sbjct: 123 RFDAGKGRGLAAPSANTFGKISPTTAQHVRDDLGEKPDGKTDFILDGGECTVGIESTILD 182 Query: 183 VQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242 + E RILR G + E + + I +E+ ++P+ G +KSHYAP +++ + Sbjct: 183 LTGETP-RILREGDVSGEMISKVIGKPVEHGA-VGASPRVSGSMKSHYAPEHVLKIVSAD 240 Query: 243 VNPREA--LIR----FGNVPIKNIEN--AIISLNLSKTGKLKEAAFNLFNYMKIADDSGA 294 P E L R F + + I + ++ + KE NL+ ++ D G Sbjct: 241 DLPGETQFLARHFKTFSLIAPEKIAKRFSTVAEKVRGYKDAKELQVNLYKWLHELDRDGG 300 Query: 295 SSIAFSSIPN-HGLGIAINNRLERAAAPR 322 I F+ P + +RL RAAA R Sbjct: 301 DVI-FAVEPELTDSSAGVLDRLTRAAAER 328 >gi|303256757|ref|ZP_07342771.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderiales bacterium 1_1_47] gi|302860248|gb|EFL83325.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderiales bacterium 1_1_47] Length = 334 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 108/329 (32%), Positives = 157/329 (47%), Gaps = 23/329 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L KA + L+AG +AIPTETVYGLA D+ N A++ +Y K RPA +PLI HV+ + Sbjct: 5 LEKAVKILEAGGLVAIPTETVYGLAADAENEAAVKSIYAAKNRPATHPLIVHVASAKALP 64 Query: 72 KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-----GFTK 125 A P L + FWPGPLT+VL + T T R P K Sbjct: 65 YWAREIPEDAKKLTEAFWPGPLTIVLK--RSAHAKDFVTGGQDTVALRCPSHPLAHELLK 122 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHI---LSSSICKEIPLIIDGGISKIGLESTIVN 182 + G LA PSAN G+IS T +H+ L + I+DGG +G+ESTI++ Sbjct: 123 RFDAGKGRGLAAPSANTFGKISPTTAQHVRDDLGEKPDGKTDFILDGGECTVGIESTILD 182 Query: 183 VQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242 + E RILR G + E + + I +E+ ++P+ G +KSHYAP +++ + Sbjct: 183 LTGETP-RILREGDVSGEMISKVIGKPVEHGA-VGASPRVSGSMKSHYAPEHVLKIVSAD 240 Query: 243 VNPREA--LIR----FGNVPIKNIEN--AIISLNLSKTGKLKEAAFNLFNYMKIADDSGA 294 P E L R F + + I + ++ + KE NL+ ++ D G Sbjct: 241 DLPGETQFLARHFKTFSLIAPEKIAKRFSTVAEKVRGYKDAKELQVNLYKWLHELDRDGG 300 Query: 295 SSIAFSSIPN-HGLGIAINNRLERAAAPR 322 I F+ P + +RL RAAA R Sbjct: 301 DVI-FAVEPELTDSSAGVLDRLTRAAAER 328 >gi|170761511|ref|YP_001785471.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum A3 str. Loch Maree] gi|169408500|gb|ACA56911.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum A3 str. Loch Maree] Length = 351 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 103/338 (30%), Positives = 175/338 (51%), Gaps = 32/338 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + + KA + L G + PTETVYGL ++ + A++++++ K RP NPLI H+S + Sbjct: 14 DEDVISKAGDTLRRGGLVVFPTETVYGLGANALDKNAVKKIFKAKGRPQDNPLIVHISKM 73 Query: 68 SMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLST-ANLKTACFRVPCG-FT 124 ++K P ++ L FWPGP+T++ L DI P T A L + R+P Sbjct: 74 KDIEKLVEEIPSVAEKLMDKFWPGPMTII---LKKKDIIPNETSAGLDSIGIRMPSNKIA 130 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 KLI G P+A PSAN SG+ S T+V+ + + ++ +I+ G S++G+EST+++ Sbjct: 131 MKLISMAGVPIAAPSANLSGKPSPTDVETCI-EDLDGKVNIILGGDNSEVGVESTVIDCT 189 Query: 185 CEKKVRILRPGGLEIETLKRAIS-VELEYCV----DETSTPQSPGMLKSHYAPRSQVRLR 239 ILRPGG+ +E LK S + ++ + D+ P++PGM HYAP++ +++ Sbjct: 190 INPPC-ILRPGGITLEMLKEVDSNIYIDPAIMEKPDKELKPKAPGMKYRHYAPKAPLKII 248 Query: 240 AIHVNPR------------EALIRFGNVPI-KNIEN----AIISLNLSKTGKLKEAAFNL 282 +N +A + G + + I+N ++S+ K L A NL Sbjct: 249 KGDLNKTIEKINEMVQNYIDAEKKVGIIATDETIDNYKKGDVVSIGSRKD--LNTIAHNL 306 Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 F ++ D+ I + +G+AI NRL+++A Sbjct: 307 FYVLRSFDEKNVDLILSEAFEEKDMGVAIMNRLKKSAG 344 >gi|261210756|ref|ZP_05925048.1| YrdC family protein [Vibrio sp. RC341] gi|260840241|gb|EEX66821.1| YrdC family protein [Vibrio sp. RC341] Length = 320 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 105/329 (31%), Positives = 169/329 (51%), Gaps = 23/329 (6%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 Q+ ++T ++ + A + L G +AIPTETVYGLA D+ P A+++++ K RPA +PLI Sbjct: 5 QLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPLI 63 Query: 62 CHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 H+ + + A+ + + LA+ FWPGPLT++L + P+ T L T RVP Sbjct: 64 VHLGSAEQLSEWATDIADEAYQLAQAFWPGPLTMLLP--KAEHVSPVVTGGLDTIGIRVP 121 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 ++++ + +A PSAN ++S T+ + +L + + ++DGG + GLEST Sbjct: 122 AHPVLLEILKAHRLAVAAPSANPYKKLSPTSAQQVL-DGLNGRLAAVLDGGECQHGLEST 180 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVE-LEYCVDETSTPQSPGMLKSHYAPRSQVRL 238 IV++ C K R+LR G + L + E L+ V + PG + SHY P++ RL Sbjct: 181 IVDLTC-KPFRVLRAGPITASELSAVLGQEVLQPQVHHVAV---PGNVDSHYQPKT--RL 234 Query: 239 RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLK-----EAAFNLFNYMKIA--DD 291 R I E L+ GN+ I + + L S+ LK A+ Y +A D Sbjct: 235 RVIDAIDNE-LVTAGNIKIALLH--LSELQASEQRLLKPMPQDAKAYGQALYRSLAEVDK 291 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320 G I P +A+++RL RAA+ Sbjct: 292 WGVDEIWLERPPQGETWLAVHDRLRRAAS 320 >gi|71010426|ref|XP_758389.1| hypothetical protein UM02242.1 [Ustilago maydis 521] gi|46098131|gb|EAK83364.1| hypothetical protein UM02242.1 [Ustilago maydis 521] Length = 516 Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 90/266 (33%), Positives = 137/266 (51%), Gaps = 37/266 (13%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 N+L KA L A +A P+ETVYGL ++ + +A ++Y KKRPA NPLI HVSD+ M Sbjct: 61 NSLDKAASHLRASQLVAFPSETVYGLGANALSQSAASKIYAAKKRPADNPLIVHVSDLEM 120 Query: 70 VK----KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCG-F 123 + + ++ L K FWPG LTL+ + + P + T + R+P Sbjct: 121 LDTLLPQSYTMSQAYSDLIKAFWPGALTLLFPVDTQRPAVPTVVTCGHPSVAVRMPSHPI 180 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHIL-----------SSSICKEIP-----LII 167 + LI G P+A PSAN SG+ S T H+L SS+ + P I+ Sbjct: 181 ARALIAISGLPMAGPSANASGRPSPTTAGHVLRDLGGQLDAESSSADASQAPKGRLRYIL 240 Query: 168 DGGISKIGLESTIVN-VQCEKKVRILRPGGLEIETLK--------------RAISVELEY 212 DGG ++G+EST+++ + +VR+LRPGG+ +E + R ++E Sbjct: 241 DGGACQVGVESTVIDGITAADEVRVLRPGGVTVEQIASVLDKAGLANKVKLRVYGKDMER 300 Query: 213 CVDETSTPQSPGMLKSHYAPRSQVRL 238 V++ S P +PGM HY+P ++V L Sbjct: 301 SVEQESNPTTPGMKYRHYSPTARVVL 326 >gi|264680710|ref|YP_003280620.1| Sua5/YciO/YrdC/YwlC family protein [Comamonas testosteroni CNB-2] gi|262211226|gb|ACY35324.1| Sua5/YciO/YrdC/YwlC family protein [Comamonas testosteroni CNB-2] Length = 332 Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 107/324 (33%), Positives = 167/324 (51%), Gaps = 33/324 (10%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L G + +PTETVYGLA DS N A+ +++ K RPA +PLI HV+D + + ++A P Sbjct: 18 LQQGRLLGLPTETVYGLAADSDNDAAVAQIFAAKGRPANHPLIVHVADATAITRYAKEVP 77 Query: 79 -LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP----CGFTKKLIETYGH 133 + L FWPGPLTL+L L ST + R P K + Sbjct: 78 VFAQQLIDAFWPGPLTLILPRLPHA--AKASTGGQDSVGLRCPSHPVAHAVLKACQQLDP 135 Query: 134 P---LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 P ++ PSAN+ G++S T +H+ ++ +E+ L++DGG ++G+ESTIV+ C + V Sbjct: 136 PVWGVSAPSANKFGRVSPTTAEHV-ATEFGEEL-LVLDGGACEVGIESTIVD--CTRGVP 191 Query: 191 I-LRPGGLEIETLKRAISV----ELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245 + LRPG + + + RA + + E D TP++ G L +HYAP ++VRL Sbjct: 192 VLLRPGAVTRDDIARACGLRPLSKEELTAD---TPRASGTLLAHYAPNAKVRLMDAG-QL 247 Query: 246 REALIRFG----NVPIK-----NIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296 + AL G N+ I N+ A + L + + ++ A LF ++ DD GA Sbjct: 248 QSALDILGKDGRNIAIYHRSPLNVTTAQLLLR-RMSDEPRDVARELFGMLRNFDDWGAKL 306 Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320 I + P+ + +RL+RAAA Sbjct: 307 IWIETPPDTADWEGVRDRLQRAAA 330 >gi|296449033|ref|ZP_06890823.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium difficile NAP08] gi|296879856|ref|ZP_06903829.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium difficile NAP07] gi|296262126|gb|EFH08931.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium difficile NAP08] gi|296429145|gb|EFH15019.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium difficile NAP07] Length = 353 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 110/329 (33%), Positives = 167/329 (50%), Gaps = 34/329 (10%) Query: 16 CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75 + L G + PTETVYGL ++ + A++++YE K RP+ NPLI H+ + V A Sbjct: 29 AKLLREGKTVIFPTETVYGLGANALDENAVKKIYEAKGRPSDNPLIVHIYEKEEVYDLAK 88 Query: 76 --VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA-NLKTACFRVPCG-FTKKLIETY 131 D L + KL WPGP+T++L+ DI P T+ L T R+P + +I+ Sbjct: 89 DISDKAKLVIEKL-WPGPITIILN---KKDIIPYKTSGGLDTVAIRMPSNIIARAIIKEA 144 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 G P+A PSAN SG+ S T KH+ + + I+ GG S GLEST++++ E+ I Sbjct: 145 GIPIAAPSANISGRPSPTKAKHVY-EEMNGRVDGIVLGGDSNFGLESTVLDL-TEETPMI 202 Query: 192 LRPGGLEIETLKRAIS-VELEYCV---DETSTPQSPGMLKSHYAPRSQVRL-------RA 240 LRPG + E L+ + V+L+ + ++ ++PGM HY+P + V + A Sbjct: 203 LRPGSITKEVLEELLGEVKLDPSLSKKEDNQKAKAPGMKYKHYSPNADVYIISGKRENVA 262 Query: 241 IHVNP-----REALIRFGNV-PIKNIE---NAIISLNLSKTGKLKEAAFNLFNYMKIADD 291 I +N RE ++ G + KN E +I L S L+E A NLF+ + D Sbjct: 263 IKINDMIKSNREKGLKTGVMCTSKNREFYDGEVIDLGNS----LEEVASNLFDALIEMDK 318 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320 I P G+G AI NRL ++A Sbjct: 319 KSVDVIYSEEFPKTGVGQAIMNRLLKSAG 347 >gi|222098797|ref|YP_002532855.1| sua5/ycio/yrdc/ywlc family protein [Bacillus cereus Q1] gi|221242856|gb|ACM15566.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus Q1] Length = 298 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 103/296 (34%), Positives = 154/296 (52%), Gaps = 21/296 (7%) Query: 41 NPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLL 99 N AI +++E K RP+ NPLI H+ S + + P++ L + FWPGPLT++L Sbjct: 2 NDEAIAKIFEAKGRPSDNPLIVHIGTKSQLDGIVKEIPPVAEKLMEHFWPGPLTIILP-- 59 Query: 100 STTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSS 158 I TA L T R+P LIE P+A PSANRSG+ S T H+ Sbjct: 60 RKEGISEKVTAGLHTVGVRMPDHPVALALIEEANVPVAAPSANRSGRPSPTLASHVYED- 118 Query: 159 ICKEIPLIIDGGISKIGLESTIVNVQCEKKV-RILRPGGLEIETLKRAI-SVELEYCV-D 215 + ++I I+DGG + +G+EST+++ C V ILRPGG+ E L+ I +V L+ + D Sbjct: 119 LNEKIAGIVDGGATGVGVESTVID--CTSAVPTILRPGGITKEQLEAVIGTVSLDPALKD 176 Query: 216 ETSTPQSPGMLKSHYAPR--------SQVRLRAIHVNPREALIRFGNVPIK---NIENAI 264 E P+SPGM +HYAP+ S+ ++ + +E + G + + +I NA Sbjct: 177 EKEKPKSPGMKYTHYAPKAPLSIVEGSREFIQRLVDEKKEEGFKVGVLTTEEYHHIYNAD 236 Query: 265 ISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + L+ L A L++ ++ D S I S PN G+G AI NRL +AA Sbjct: 237 VVLSCGVRSDLASVATKLYDVLRTFDASEVDVIFSESFPNEGIGNAIMNRLTKAAG 292 >gi|126701105|ref|YP_001090002.1| hypothetical protein CD3482 [Clostridium difficile 630] gi|260685001|ref|YP_003216286.1| hypothetical protein CD196_3272 [Clostridium difficile CD196] gi|260688659|ref|YP_003219793.1| hypothetical protein CDR20291_3318 [Clostridium difficile R20291] gi|260211164|emb|CBA66618.1| conserved hypothetical protein [Clostridium difficile CD196] gi|260214676|emb|CBE07311.1| conserved hypothetical protein [Clostridium difficile R20291] Length = 353 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 107/329 (32%), Positives = 166/329 (50%), Gaps = 34/329 (10%) Query: 16 CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75 + L G + PTETVYGL ++ + A++++YE K RP+ NPLI H+ + V A Sbjct: 29 AKLLREGKTVIFPTETVYGLGANALDENAVKKIYEAKGRPSDNPLIVHIYEKEEVYDLAK 88 Query: 76 --VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA-NLKTACFRVPCG-FTKKLIETY 131 D L + KL WPGP+T++L+ DI P T+ L T R+P + +I+ Sbjct: 89 DISDKAKLVIEKL-WPGPITIILN---KKDIIPYKTSGGLDTVAIRMPSNVIARAIIKEA 144 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 G P+A PSAN SG+ S T KH+ + + I+ GG S GLEST++++ E+ I Sbjct: 145 GIPIAAPSANISGRPSPTKAKHVY-EEMNGRVDGIVLGGDSNFGLESTVLDL-TEETPMI 202 Query: 192 LRPGGLEIETLKRAIS-VELEYCV---DETSTPQSPGMLKSHYAPRSQVRL-------RA 240 LRPG + E L+ + V+L+ + ++ ++PGM HY+P + V + A Sbjct: 203 LRPGSITKEVLEELLGEVKLDPSLSKKEDNQKAKAPGMKYKHYSPNADVYIISGKRENVA 262 Query: 241 IHVNP-----REALIRFGNVPIKN----IENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291 +N R+ ++ G + I + +I L S L+E A NLF+ + D Sbjct: 263 TKINDMIKSNRDKGLKTGVMCISRNREFYDGEVIDLGNS----LEEVASNLFDALIEMDK 318 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320 G I P G+G AI NRL ++A Sbjct: 319 KGVDVIYSEEFPKTGVGQAIMNRLLKSAG 347 >gi|194335648|ref|YP_002017442.1| Sua5/YciO/YrdC/YwlC family protein [Pelodictyon phaeoclathratiforme BU-1] gi|194308125|gb|ACF42825.1| Sua5/YciO/YrdC/YwlC family protein [Pelodictyon phaeoclathratiforme BU-1] Length = 317 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 112/332 (33%), Positives = 165/332 (49%), Gaps = 29/332 (8%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 MQ + +TDS +A L++G +A PTETVYGL +P AI +L+ K RP+ NPL Sbjct: 1 MQTI-LTDSP--EEAAAILNSGGVVAFPTETVYGLGAGICHPEAILQLFRAKGRPSDNPL 57 Query: 61 ICHVSDISMVKK-----HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKT 114 I H+ I + + HA L H F+PGPLTLVL S+ P S TA L+T Sbjct: 58 IVHLGSIDQLDEVAEALHADARALIEH----FFPGPLTLVLQKKSSV---PFSVTAGLET 110 Query: 115 ACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173 R P ++ + G P+A PSANRSG S T+ + ++ + I ++ G S Sbjct: 111 VGVRCPSNPVAQEFLRLCGCPVAAPSANRSGLPSATSWEAVM-EDLEGRIECVLRGRPST 169 Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETS-----TPQSPGMLKS 228 IGLESTIV K + +LR G + +E L+ + E V+ + +P+ PG+ Sbjct: 170 IGLESTIVECSGAKPL-LLRAGAITLEQLREVVP---EITVNAVTNKPEESPKCPGLKYP 225 Query: 229 HYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKI 288 HYAP++ + L + +P ++ + + + T L+E LF + ++ Sbjct: 226 HYAPKASIILWSGEKSPVADSPSSASIGLSAPPEGVTLCKVCST--LEEYGRELFGFFRL 283 Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 D G I N GLG AI +RL RAAA Sbjct: 284 CDAEGIGVIYCELPSNEGLGRAIRDRLLRAAA 315 >gi|254977106|ref|ZP_05273578.1| hypothetical protein CdifQC_17418 [Clostridium difficile QCD-66c26] gi|255094434|ref|ZP_05323912.1| hypothetical protein CdifC_17521 [Clostridium difficile CIP 107932] gi|255102691|ref|ZP_05331668.1| hypothetical protein CdifQCD-6_17911 [Clostridium difficile QCD-63q42] gi|255308512|ref|ZP_05352683.1| hypothetical protein CdifA_18121 [Clostridium difficile ATCC 43255] gi|255316186|ref|ZP_05357769.1| hypothetical protein CdifQCD-7_17609 [Clostridium difficile QCD-76w55] gi|255518847|ref|ZP_05386523.1| hypothetical protein CdifQCD-_17148 [Clostridium difficile QCD-97b34] gi|255652026|ref|ZP_05398928.1| hypothetical protein CdifQCD_17710 [Clostridium difficile QCD-37x79] gi|306521768|ref|ZP_07408115.1| hypothetical protein CdifQ_20080 [Clostridium difficile QCD-32g58] gi|328887821|emb|CAJ70385.2| putative RNA-binding protein [Clostridium difficile] Length = 346 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 107/329 (32%), Positives = 166/329 (50%), Gaps = 34/329 (10%) Query: 16 CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75 + L G + PTETVYGL ++ + A++++YE K RP+ NPLI H+ + V A Sbjct: 22 AKLLREGKTVIFPTETVYGLGANALDENAVKKIYEAKGRPSDNPLIVHIYEKEEVYDLAK 81 Query: 76 --VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA-NLKTACFRVPCG-FTKKLIETY 131 D L + KL WPGP+T++L+ DI P T+ L T R+P + +I+ Sbjct: 82 DISDKAKLVIEKL-WPGPITIILN---KKDIIPYKTSGGLDTVAIRMPSNVIARAIIKEA 137 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 G P+A PSAN SG+ S T KH+ + + I+ GG S GLEST++++ E+ I Sbjct: 138 GIPIAAPSANISGRPSPTKAKHVY-EEMNGRVDGIVLGGDSNFGLESTVLDL-TEETPMI 195 Query: 192 LRPGGLEIETLKRAIS-VELEYCV---DETSTPQSPGMLKSHYAPRSQVRL-------RA 240 LRPG + E L+ + V+L+ + ++ ++PGM HY+P + V + A Sbjct: 196 LRPGSITKEVLEELLGEVKLDPSLSKKEDNQKAKAPGMKYKHYSPNADVYIISGKRENVA 255 Query: 241 IHVNP-----REALIRFGNVPIKN----IENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291 +N R+ ++ G + I + +I L S L+E A NLF+ + D Sbjct: 256 TKINDMIKSNRDKGLKTGVMCISRNREFYDGEVIDLGNS----LEEVASNLFDALIEMDK 311 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320 G I P G+G AI NRL ++A Sbjct: 312 KGVDVIYSEEFPKTGVGQAIMNRLLKSAG 340 >gi|118594847|ref|ZP_01552194.1| Putative translation factor [Methylophilales bacterium HTCC2181] gi|118440625|gb|EAV47252.1| Putative translation factor [Methylophilales bacterium HTCC2181] Length = 324 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 96/330 (29%), Positives = 174/330 (52%), Gaps = 25/330 (7%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 ++ TDS+ + +A L G + +PTETVYGLA D+ + +AI+ ++ +KKRP +PLI Sbjct: 5 LLKATDSDCINQAVTLLKDGKLVGLPTETVYGLAADATHTSAIQEIFRVKKRPPNHPLIL 64 Query: 63 HVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 H+ D+S + + A ++ ++ LAK F PG L+++L + T C R+P Sbjct: 65 HLPDLSDLSQWAINIPDITYALAKQFMPGSLSVLLH--KNPSVSNAITGGSNKICIRIPH 122 Query: 122 GFTK-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 T K+IE G P+ PSAN G+IS T+ +H++ + EI ++DGG ++G+ESTI Sbjct: 123 HETTLKIIERLGSPIVAPSANIFGRISPTSAEHVM-QDLFGEIDAVVDGGECRVGIESTI 181 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQV---- 236 V++ +LRPGG+ + L++A+ ++ + D +T S G L +HY P +++ Sbjct: 182 VDLTTPIPT-LLRPGGVNLFALEKALHSKI-FIPDSVNTSIS-GNLVNHYQPTTKLTPIH 238 Query: 237 -------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIA 289 +L + + F ++ I ++ +++ K +L + +++ Sbjct: 239 KEDIMTHQLMGASDSTTTIFLLFEDLHELQINKYLMPMDVHKYSQL------FYGVLRVL 292 Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAA 319 D +G I P +AIN+R+ +A+ Sbjct: 293 DKAGFKEIFIQIPPKSPEWLAINDRILKAS 322 >gi|294792024|ref|ZP_06757172.1| Sua5/YciO/YrdC/YwlC family protein [Veillonella sp. 6_1_27] gi|294457254|gb|EFG25616.1| Sua5/YciO/YrdC/YwlC family protein [Veillonella sp. 6_1_27] Length = 347 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 107/323 (33%), Positives = 167/323 (51%), Gaps = 39/323 (12%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-VDPLSLHL 83 ++IPTETVYGL + +P A+ ++Y K RP+ NPLI HV + +K + + + L Sbjct: 31 VSIPTETVYGLGANGLDPEAMDKIYAAKGRPSDNPLILHVPNSESIKPLVTEISATAQAL 90 Query: 84 AKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVP----CGFTKKLIETYGHPLAIP 138 FWPGPLT+ L +D+ P +T L R P C + L+E G P+A P Sbjct: 91 MDAFWPGPLTIT---LPKSDLVPDRATGGLTRVALRCPDHEAC---RVLLERAGIPIAAP 144 Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLE 198 SAN SG+ S T + + + + I I+D G IG+EST+V V + KV ILRPGG+ Sbjct: 145 SANISGRPSPTTAEDVY-NDMNGRISYILDAGPCTIGVESTVVEVH-DDKVIILRPGGIT 202 Query: 199 IETLKRAISVELEY---CVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNV 255 L+R +S +EY V+ T+TP++PGM +HYAP + + + NP + F + Sbjct: 203 KAQLERVVST-VEYDTALVNATTTPKAPGMKYTHYAPDAP--MTVVVGNPEDIASMFKAL 259 Query: 256 PIKNIENAIISL------NLSKT---------GKLKEA---AFNLFNYMKIADDSGASSI 297 + IE I L NL K G ++A + + + +++ + I Sbjct: 260 S-EGIEGPIGCLVSHETYNLIKEDGRFMCHCFGHHRDALALGHDFYKSLLHFNENHVTLI 318 Query: 298 AFSSIPNHGLGIAINNRLERAAA 320 + + G G+AI NR+E+A++ Sbjct: 319 LAEGVDDDGFGVAIMNRMEKASS 341 >gi|71756077|ref|XP_828953.1| hypothetical protein [Trypanosoma brucei TREU927] gi|70834339|gb|EAN79841.1| hypothetical protein, conserved [Trypanosoma brucei] Length = 379 Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 111/372 (29%), Positives = 180/372 (48%), Gaps = 58/372 (15%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I D + L A L G +A+PTETVYGL ++ + A+++++E+K RP+ +PLICHV Sbjct: 4 IIDVSELDYAAHSLTRGGLVALPTETVYGLGGNALDERAVQQIFEVKGRPSTDPLICHVP 63 Query: 66 DI--SMVKKHASVDPLSLHLAKL----FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 DI ++ ++ DP +L +AK WPGPLT+V + + + P T N R+ Sbjct: 64 DIQRAVGLWDSNADPAALEVAKWIGDAIWPGPLTIVFR--ANSVLPPSVTGNSGYVGVRI 121 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP--LIIDGGISKIGL 176 P +L++ P+A PSAN G +S T +H+L + + P L+IDGG S IG+ Sbjct: 122 PNHPIALQLLQLVNFPVAAPSANTFGHVSPTTAEHVL-RDLGERCPSLLVIDGGHSNIGI 180 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV---DETSTP-------QSPGML 226 EST++ V KV ILR G + + L++ I + + D S P PG L Sbjct: 181 ESTVLKVASATKVEILRRGKVSLADLQQVIWKKFACHITVRDTRSCPGTVDMAMDGPGQL 240 Query: 227 KSHYAPRSQVRLRA-------IHVNP---------------------REALIRFGNVPIK 258 +HY+P + +H N + +I FG + + Sbjct: 241 LTHYSPSVLSGMLTPKSTNCEVHQNELDKAVVELPSTPPLTGGVPLNQTVIIDFGGLLQR 300 Query: 259 NIENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSIAF---SSIP----NHGLGIA 310 + +LS G++++A F +F ++ ++ SGA + F S P + L A Sbjct: 301 FQRVCLAYRDLSAEGEVQQACFAVFEALRWSETVSGAGVVLFPLISEWPCKTGDEELLAA 360 Query: 311 INNRLERAAAPR 322 + +RL RAA+ + Sbjct: 361 VEDRLFRAASGK 372 >gi|262045802|ref|ZP_06018766.1| Sua5 family translation factor [Lactobacillus crispatus MV-3A-US] gi|260573761|gb|EEX30317.1| Sua5 family translation factor [Lactobacillus crispatus MV-3A-US] Length = 333 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 107/329 (32%), Positives = 160/329 (48%), Gaps = 20/329 (6%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I + + A + L G +A PTETVYGL + +++ +Y K RP+ NPLI VS Sbjct: 5 IFKKDQINDAVKLLAKGELVAFPTETVYGLGAIATKEKSVKGVYAAKGRPSDNPLIVTVS 64 Query: 66 DISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 D M+ K+A P + L K FWPGPLTL+L + + T L T FR P Sbjct: 65 DEEMMAKYAKEVPERAKKLIKHFWPGPLTLLL-FVKPGTLPDAVTGGLDTVAFRCPDDQL 123 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 T LI G+P+ PSAN S + S T +H+ + +I IID G +++GLESTI+++ Sbjct: 124 THDLIAKLGYPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDDGPTRVGLESTIIDL 182 Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 E + +LRPG + E L + ++ V + P++PGM HYAP V Sbjct: 183 SVETPI-VLRPGEITPEELSEVLGEKVLINTGKVSDKDIPKAPGMKYRHYAPSEPV---V 238 Query: 241 IHVNPRE-ALIRFGN-VPIKNIENAIISLNLSKTGK------LKEAAFNLFNYMKIADDS 292 + +P + A I F + + + + +NL + K L +A NLF ++ DD Sbjct: 239 VVDDPADFAKIDFNEKIGVAALAPVLAKINLPQANKFDLGNNLVDADHNLFGGLRYFDDQ 298 Query: 293 GA-SSIAFSSIPNHGLGIAINNRLERAAA 320 +I +A NRL +AA Sbjct: 299 DDIETIYVQGFHEGEESLAYMNRLNKAAG 327 >gi|168182249|ref|ZP_02616913.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum Bf] gi|182674619|gb|EDT86580.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum Bf] Length = 351 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 102/338 (30%), Positives = 174/338 (51%), Gaps = 32/338 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + + KA + L G + PTETVYGL ++ + A++++++ K RP NPLI H+S + Sbjct: 14 DEHVISKAGDILRQGGLVVFPTETVYGLGANALDKNAVKKIFKAKGRPQDNPLIVHISKM 73 Query: 68 SMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLST-ANLKTACFRVPCG-FT 124 +++ P ++ L FWPGP+T++ L DI P T A L + R+P Sbjct: 74 KDIERLVEKIPSVAEKLMDKFWPGPMTII---LKKKDIIPNETSAGLDSIGIRMPSNKIA 130 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 KLI G P+A PSAN SG+ S T+V+ + + ++ +I+ G S++G+EST+++ Sbjct: 131 MKLISMAGVPIAAPSANLSGKPSPTDVETCI-EDLDGKVNIILGGDNSEVGVESTVIDCT 189 Query: 185 CEKKVRILRPGGLEIETLKRAIS-VELEYCV----DETSTPQSPGMLKSHYAPRSQVRLR 239 ILRPGG+ +E LK S + ++ + D+ P++PGM HYAP + +++ Sbjct: 190 INPPC-ILRPGGITLEMLKEVDSNIYIDSAIMKKPDKELKPKAPGMKYRHYAPNAPLKII 248 Query: 240 AIHVNPR------------EALIRFGNVPI-KNIEN----AIISLNLSKTGKLKEAAFNL 282 +N +A + G + + I+N ++S+ K L A NL Sbjct: 249 KGDLNKTIEKINEMVQNYIDAEKKVGIIATDETIDNYKKGDVVSIGSRKD--LDTIAHNL 306 Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 F ++ D+ I + +G+AI NRL+++A Sbjct: 307 FYVLRSFDEKNVDLILSEAFEEKDMGVAIMNRLKKSAG 344 >gi|150388176|ref|YP_001318225.1| Sua5/YciO/YrdC/YwlC family protein [Alkaliphilus metalliredigens QYMF] gi|149948038|gb|ABR46566.1| Sua5/YciO/YrdC/YwlC family protein [Alkaliphilus metalliredigens QYMF] Length = 356 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 106/332 (31%), Positives = 168/332 (50%), Gaps = 30/332 (9%) Query: 15 AC-EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 AC E + G +A PTETVYGL ++ + AI +++ K RP+ NPLI HV+ V Sbjct: 23 ACGEMIREGKTVAFPTETVYGLGANALDSKAINKIFVAKGRPSDNPLIVHVAHRVEVDAL 82 Query: 74 ASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY 131 V P + L FWPGPLTLV++ + I +A L T R+P + LIE Sbjct: 83 VRVIPEKAKKLMAHFWPGPLTLVME--KSHGIPGEISAGLSTVAIRMPVHPIARTLIEKA 140 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 G P+A PSAN SG+ S T H++ + ++ II GG +G+EST+++V E+ I Sbjct: 141 GVPVAAPSANTSGKPSPTRAAHVI-QDLRGKVDAIIAGGPCDVGVESTVLDV-TEETPMI 198 Query: 192 LRPGGLEIETLKR-----AISVELEYCVDETSTPQSPGMLKSHYAPRSQV----RLRAIH 242 LRPGG+ E L+ A+ L + + P+SPGM +HYAP+++V + A Sbjct: 199 LRPGGVTKEMLEAVIGEVALDPGLYHRGEMKDVPRSPGMKYTHYAPKAKVIIIEGVEAAV 258 Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEA--------------AFNLFNYMKI 288 V ++ + ++ + +L+ +++E A NLF ++ Sbjct: 259 VRKIREMVAYYKEKGLSVGVIVTDESLAYYDQVEECCVKSMGSRQNPETIANNLFRVLRE 318 Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 D++ + I ++ G+G A+ NRL +AA Sbjct: 319 FDETNVAIILSEAVEEVGIGQAVMNRLMKAAG 350 >gi|255657436|ref|ZP_05402845.1| hypothetical protein CdifQCD-2_17451 [Clostridium difficile QCD-23m63] Length = 346 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 110/329 (33%), Positives = 167/329 (50%), Gaps = 34/329 (10%) Query: 16 CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75 + L G + PTETVYGL ++ + A++++YE K RP+ NPLI H+ + V A Sbjct: 22 AKLLREGKTVIFPTETVYGLGANALDENAVKKIYEAKGRPSDNPLIVHIYEKEEVYDLAK 81 Query: 76 --VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA-NLKTACFRVPCG-FTKKLIETY 131 D L + KL WPGP+T++L+ DI P T+ L T R+P + +I+ Sbjct: 82 DISDKAKLVIEKL-WPGPITIILN---KKDIIPYKTSGGLDTVAIRMPSNIIARAIIKEA 137 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 G P+A PSAN SG+ S T KH+ + + I+ GG S GLEST++++ E+ I Sbjct: 138 GIPIAAPSANISGRPSPTKAKHVY-EEMNGRVDGIVLGGDSNFGLESTVLDL-TEETPMI 195 Query: 192 LRPGGLEIETLKRAIS-VELEYCV---DETSTPQSPGMLKSHYAPRSQVRL-------RA 240 LRPG + E L+ + V+L+ + ++ ++PGM HY+P + V + A Sbjct: 196 LRPGSITKEVLEELLGEVKLDPSLSKKEDNQKAKAPGMKYKHYSPNADVYIISGKRENVA 255 Query: 241 IHVNP-----REALIRFGNV-PIKNIE---NAIISLNLSKTGKLKEAAFNLFNYMKIADD 291 I +N RE ++ G + KN E +I L S L+E A NLF+ + D Sbjct: 256 IKINDMIKSNREKGLKTGVMCTSKNREFYDGEVIDLGNS----LEEVASNLFDALIEMDK 311 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320 I P G+G AI NRL ++A Sbjct: 312 KSVDVIYSEEFPKTGVGQAIMNRLLKSAG 340 >gi|227877273|ref|ZP_03995346.1| Sua5 family translation factor [Lactobacillus crispatus JV-V01] gi|227863129|gb|EEJ70575.1| Sua5 family translation factor [Lactobacillus crispatus JV-V01] Length = 339 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 108/334 (32%), Positives = 160/334 (47%), Gaps = 20/334 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I + + A + L G +A PTETVYGL + +++ +Y K RP+ NPL Sbjct: 6 MMETKIFKKDQINDAVKLLAKGELVAFPTETVYGLGAIATKEKSVKGVYAAKGRPSDNPL 65 Query: 61 ICHVSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I VSD M+ K+A P + L K FWPGPLTL+L + + T L T FR Sbjct: 66 IVTVSDEEMMAKYAKEVPERAKKLIKHFWPGPLTLLL-FVKPGTLPDAVTGGLDTVAFRC 124 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T LI G+P+ PSAN S + S T +H+ + +I IID G +++GLES Sbjct: 125 PDDQLTHDLIAKLGYPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDDGPTRVGLES 183 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQ 235 TI+++ E + +LRPG + E L + ++ V + P++PGM HYAP Sbjct: 184 TIIDLSVETPI-VLRPGEITPEELSEVLGEKVLINTGKVSDKDIPKAPGMKYRHYAPSEP 242 Query: 236 VRLRAIHVNPRE-ALIRFGN-VPIKNIENAIISLNLSKTGK------LKEAAFNLFNYMK 287 V + +P + A I F + + + +NL + K L +A NLF ++ Sbjct: 243 V---VVVDDPADFAKIDFNEKTGVAALAPVLAKINLPQANKFDLGNNLVDADHNLFGGLR 299 Query: 288 IADDSGA-SSIAFSSIPNHGLGIAINNRLERAAA 320 DD +I +A NRL +AA Sbjct: 300 YFDDQDDIETIYVQGFHEGEESLAYMNRLNKAAG 333 >gi|293381671|ref|ZP_06627652.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus crispatus 214-1] gi|290921718|gb|EFD98739.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus crispatus 214-1] Length = 334 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 108/334 (32%), Positives = 160/334 (47%), Gaps = 20/334 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I + + A + L G +A PTETVYGL + +++ +Y K RP+ NPL Sbjct: 1 MMETKIFKKDQINDAVKLLAKGELVAFPTETVYGLGAIATKEKSVKGVYAAKGRPSDNPL 60 Query: 61 ICHVSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I VSD M+ K+A P + L K FWPGPLTL+L + + T L T FR Sbjct: 61 IVTVSDEEMMAKYAKEVPERAKKLIKHFWPGPLTLLL-FVKPGTLPDAVTGGLDTVAFRC 119 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T LI G+P+ PSAN S + S T +H+ + +I IID G +++GLES Sbjct: 120 PDDQLTHDLIAKLGYPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDDGPTRVGLES 178 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQ 235 TI+++ E + +LRPG + E L + ++ V + P++PGM HYAP Sbjct: 179 TIIDLSVETPI-VLRPGEITPEELSEVLGEKVLINTGKVSDKDIPKAPGMKYRHYAPSEP 237 Query: 236 VRLRAIHVNPRE-ALIRFGN-VPIKNIENAIISLNLSKTGK------LKEAAFNLFNYMK 287 V + +P + A I F + + + +NL + K L +A NLF ++ Sbjct: 238 V---VVVDDPADFAKIDFNEKTGVAALAPVLAKINLPQANKFDLGNNLVDADHNLFGGLR 294 Query: 288 IADDSGA-SSIAFSSIPNHGLGIAINNRLERAAA 320 DD +I +A NRL +AA Sbjct: 295 YFDDQDDIETIYVQGFHEGEESLAYMNRLNKAAG 328 >gi|146296540|ref|YP_001180311.1| Sua5/YciO/YrdC/YwlC family protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410116|gb|ABP67120.1| translation factor SUA5 [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 348 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 114/337 (33%), Positives = 165/337 (48%), Gaps = 31/337 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D N L KA + L G +A PTETVYGL ++ A+ +++ K RP NPLI H+S Sbjct: 12 DYNKLSKAAQILKEGGLVAFPTETVYGLGANALLKEAVDKIFVAKGRPQDNPLIVHISSK 71 Query: 68 SMVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 M+ A V D L + FWPGPLT+VL I TA L T R+P Sbjct: 72 KMLDMCAKVTDERVYKLIEKFWPGPLTIVLP--KKECIPDNVTAGLNTVGIRMPNNKIAL 129 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +LIE G P+A PSAN SG+ S T +H++ K + +IIDGG GLEST++++ Sbjct: 130 ELIELAGVPVAAPSANVSGKPSPTEAQHVIEDLFGK-VDVIIDGGKCSFGLESTVIDLSS 188 Query: 186 EKKVRILRPGGLEIETLKRAISVELEY-----CVDETSTPQSPGMLKSHYAPRSQV---- 236 K ILRPG + LK + ++EY + S P++PGM HYAP +++ Sbjct: 189 SKP-YILRPGAVPFSILKEILE-DIEYDPSILAGNILSVPKAPGMKYKHYAPDAKMIVVK 246 Query: 237 -----RLRAIHVNPREALIRFGNVPI-------KNIENAIISLNLSKTGKLKEAAFNLFN 284 R+ I+ ++ I+ V I N E+ + L KE NLF+ Sbjct: 247 GKIHKRIDKINEIKKDLEIKGYKVGILCFYETSHNFESQ-YKIVLGSMFDYKECGKNLFS 305 Query: 285 YMKIADDSGASSIAFSSIPNHGLG-IAINNRLERAAA 320 ++ + G I G+ +A+ NRL +A+A Sbjct: 306 ALRRFNHLGVDYI-ICEWGEFGIEYLALENRLFKASA 341 >gi|328773398|gb|EGF83435.1| hypothetical protein BATDEDRAFT_4477 [Batrachochytrium dendrobatidis JAM81] Length = 324 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 106/323 (32%), Positives = 166/323 (51%), Gaps = 34/323 (10%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK-----KHASVDPL 79 +A PTETVYGLA ++ + A++ ++ K+RP+ NPLI HVS I M++ + + Sbjct: 2 VAFPTETVYGLAANALDAAAVQGIFSAKQRPSDNPLIVHVSSIQMLESLLPPSLPHLPSI 61 Query: 80 SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIP 138 + L FWPGPLT++L I L TA+ T R+P LI G PLA P Sbjct: 62 YVALINKFWPGPLTILLP--KGPHIPNLVTASHDTVAVRMPSHPVALGLIAQCGFPLAAP 119 Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLE 198 SAN SG+ S T +H+ + + IP+I+DGG+ + GLEST+V+ ILRPGG+ Sbjct: 120 SANTSGRPSPTLAEHVF-ADLHSRIPMIVDGGMCRSGLESTVVDA-LRNPPAILRPGGIT 177 Query: 199 IETLK-----RAISVELEYCVDE--TSTPQSPGMLKSHYAPRSQVRLRAIHVNP------ 245 E ++ +++ + VD+ P +PGM HY P ++V L I N Sbjct: 178 FEQIRLIAGFENVTIYNTHFVDKGLEEAPTTPGMKYRHYTPNAEVVLIEIGANAIKLDET 237 Query: 246 --------REALIRFGNVPIK-NIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296 R ++R G+ K ++ + ++L T +E A NLF ++ + + Sbjct: 238 NCVDPECTRVGVLRAGSTIDKYDVCKEAVEIHLGATA--EEIARNLFKGLRDLEQHYCAC 295 Query: 297 IAFSSIPNHGLGIAINNRLERAA 319 I IP+ G G+A+ NR+ +A+ Sbjct: 296 IIVEGIPDVGHGLAVMNRIRKAS 318 >gi|67468340|ref|XP_650214.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS] gi|56466800|gb|EAL44828.1| hypothetical protein, conserved [Entamoeba histolytica HM-1:IMSS] Length = 357 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 113/332 (34%), Positives = 162/332 (48%), Gaps = 29/332 (8%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 DS + A + + G + PTETVYGL D P AI +++++K RP NPLICH+SDI Sbjct: 28 DSKLITPAAKIIQQGGLVCFPTETVYGLGADVFQPNAINQIFKVKGRPNDNPLICHISDI 87 Query: 68 SMVKK---HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 M+ K H S D + L K FWPG LT++ + TA L T R+P Sbjct: 88 EMLNKLAAHVSED--AHKLIKRFWPGALTIIFP--RNEAVPNEVTAGLNTVGVRMPSHPI 143 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + I+ G P+A PSAN S + S T +H + + I +IIDGG IG+EST++ + Sbjct: 144 AYEFIKQCGTPIAAPSANLSTKPSPTIGRHCI-DDLNGRIEMIIDGGSCDIGVESTVLML 202 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDET----STPQSPGMLKSHYAPRSQVRLR 239 + ILRPGG+ +E L+ I Y + + P +PGM HYAP V Sbjct: 203 GNDHPT-ILRPGGVTLEMLREVIPSTQVYKMSTNLSLEAKPPTPGMKYRHYAP--SVDTI 259 Query: 240 AIHVNPR-EALIRFGNVPIK----------NIENAIISLNLSKTG-KLKEAAFNLFNYMK 287 I + R E LI + +K ++E+ +L + TG K K A LF M+ Sbjct: 260 VITGDKRSEKLIELCHEYMKSGKKVGVVCWSLESLDCTLFMKVTGDKYKGMAHALFTDMR 319 Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 D I + G+A+ NR ++AA Sbjct: 320 DLDGK-VDIILIEGVQEIKEGLAVMNRAKKAA 350 >gi|45190306|ref|NP_984560.1| AEL300Cp [Ashbya gossypii ATCC 10895] gi|44983202|gb|AAS52384.1| AEL300Cp [Ashbya gossypii ATCC 10895] Length = 418 Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 106/364 (29%), Positives = 168/364 (46%), Gaps = 52/364 (14%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 T+ + L A D G +A PTETVYGL S N ++R +Y+ K RP+ NPLI HVS Sbjct: 51 TEKHLLEAARLIRDDGETVAFPTETVYGLGGSSLNDASVRNIYKAKNRPSDNPLISHVSS 110 Query: 67 ISMVKKHASVD----------PLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115 I+ + + P+ H L + WPGPLT++L + T + L+TA T Sbjct: 111 IAQLNRRIYQQDREGDVLRNIPVVYHELVRQLWPGPLTILLPINEETALSVLTTAGQPTF 170 Query: 116 CFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174 R+P + LI P+A PSAN S + S T +H+ + +IPLI+DGG ++ Sbjct: 171 AVRIPADPVARALIALSDTPIAAPSANVSTRPSPTAAEHVY-HDLKGKIPLILDGGSCRV 229 Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYC-------VDETSTPQSPGMLK 227 G+EST+++ + +LRPGG E + + +C V ++PGM Sbjct: 230 GVESTVIDGLVNPPM-LLRPGGFTYEEIIELGGEQWSHCKVENRMTVGSGEKVRTPGMKY 288 Query: 228 SHYAPRSQV--------------RLRAI-----------HVNPREAL-----IRFGNVPI 257 HY+PR+ R++ + + R+ + I F N + Sbjct: 289 KHYSPRASTVAFAPINDDLPTSERMKIVTSEIMKYMTSHGTDKRQKVGLLTSIMFPNNLL 348 Query: 258 KNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF-SSIPNHGLGIAINNRLE 316 ++I + + + S KE NLF ++ D+ + F I + G+A+ NRL Sbjct: 349 ESITDEVDVVVYSLGSSGKEVQSNLFAMLRRLDEEDEVDLIFVEGISDRNEGLAVMNRLR 408 Query: 317 RAAA 320 +AA Sbjct: 409 KAAG 412 >gi|313891812|ref|ZP_07825417.1| Sua5/YciO/YrdC/YwlC family protein [Dialister microaerophilus UPII 345-E] gi|313119806|gb|EFR42993.1| Sua5/YciO/YrdC/YwlC family protein [Dialister microaerophilus UPII 345-E] Length = 345 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 116/333 (34%), Positives = 166/333 (49%), Gaps = 30/333 (9%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S+ + K + G +A PTETVYGL ++ + A +++Y+ K RP+ NPLI HV+D S Sbjct: 14 SDLVNKLGYIIRKGGLVAFPTETVYGLGGNALSSKAAKKIYKAKGRPSDNPLIVHVADKS 73 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA-NLKTACFRVP-CGFTK 125 VK +++ L L L+WPGPLT+V + DI P T+ L T R P T+ Sbjct: 74 QVKNFVKNINDLEHKLMDLYWPGPLTIVFE---KKDIIPYETSGGLDTVAIRCPDNNATR 130 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LI PLA PSAN S + S T K +L + + I +ID G SKIGLESTIV V Sbjct: 131 ALIRAAKVPLAGPSANISTRPSPTYAKSVL-NDLDGRINAVIDNGDSKIGLESTIVAVN- 188 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETS-TPQSPGMLKSHYAPRSQVRLRAIHVN 244 E K+ I RPG + E L L+ + +++ P++PGM HYAP + + + + N Sbjct: 189 EGKIIIYRPGAITQEMLSELAPTSLDTALKKSNEKPKAPGMKYRHYAPSAPLEIYVGNEN 248 Query: 245 PREALIRFGNVPIKNIENAIISLNLSKT--------------GKL---KEAAFNLFNYMK 287 E I + + N + I +SK GK K A NLF + Sbjct: 249 KVEESI----LEVSNENDKIYGFFVSKETAEKLPKNSIVFCWGKRSDKKSMARNLFKGLL 304 Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + I N G+G+AI NRL++A+ Sbjct: 305 FFNSQKIDQIIGEGTDNKGIGMAIMNRLKKASG 337 >gi|167769909|ref|ZP_02441962.1| hypothetical protein ANACOL_01250 [Anaerotruncus colihominis DSM 17241] gi|167667900|gb|EDS12030.1| hypothetical protein ANACOL_01250 [Anaerotruncus colihominis DSM 17241] Length = 342 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 108/312 (34%), Positives = 162/312 (51%), Gaps = 22/312 (7%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-L 83 + IPTETVYGLA ++ +P A +Y K RP NPLI H++ + + P +L+ L Sbjct: 31 VVIPTETVYGLAANALDPAAAAAIYTAKGRPCDNPLIVHIASLDELPPLVKAVPDALYRL 90 Query: 84 AKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSAN 141 A FWPGP+T++L+ +D+ P +T L T R+P + LI G PLA PSAN Sbjct: 91 ADRFWPGPMTVILE---KSDLVPSATTGGLDTVAVRMPAHPAARALIRRAGVPLAAPSAN 147 Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIET 201 SG S T +H + + + I+DGG ++GLEST++ + CE+ +ILRPG + +E Sbjct: 148 LSGSPSPTCARHCI-DDLDGRVDAIVDGGPCEVGLESTVLTL-CEQPPQILRPGAVTLEM 205 Query: 202 LKRAIS-VELEYCVDE----TSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALI-----R 251 ++ ++ +EL V E SPGM HYAP+++V L P + R Sbjct: 206 ARQVLADIELGPGVFERLPDGVRAASPGMKYKHYAPKARVILVHAARGPFANFLASRKGR 265 Query: 252 FGNVPIKNIENAIISLNLSKTGKLKEA---AFNLFNYMKIADDSGASSIAFSSIPNHGLG 308 FG + + E A +S G +A A LF+ ++ D +G + G+G Sbjct: 266 FGALCLAGDEQA-LSCPCIVYGAQDDAASQAHGLFDALRQIDRAGLPLVYARVDGAGGVG 324 Query: 309 IAINNRLERAAA 320 A+ NRL RAA Sbjct: 325 QAVYNRLLRAAG 336 >gi|313673749|ref|YP_004051860.1| sua5/ycio/yrdc/ywlc family protein [Calditerrivibrio nitroreducens DSM 19672] gi|312940505|gb|ADR19697.1| Sua5/YciO/YrdC/YwlC family protein [Calditerrivibrio nitroreducens DSM 19672] Length = 341 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 111/335 (33%), Positives = 160/335 (47%), Gaps = 25/335 (7%) Query: 2 QIMSITDSN---ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58 +I+++T+ N AL+ A E + G IPTETVYG+A N AI++++E K RP N Sbjct: 8 KIITLTEENFKEALKIASEIISNGGIAVIPTETVYGIAASIYNSDAIQKIFEAKNRPMDN 67 Query: 59 PLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 PLI H+SD + ++ S L + FWPGPLTL+ D T L T Sbjct: 68 PLIVHISDPKQLNDLTDEINETSRKLIQQFWPGPLTLIFKAKEGVDKK--VTGGLNTIAV 125 Query: 118 RVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P FT KLIE G PLA PSAN SG+ S T + I + ++ +I+D GI + GL Sbjct: 126 RMPDNAFTLKLIEMTG-PLAAPSANISGKPSGTEISDIF-EELNGKVDVIVDEGIVRCGL 183 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQV 236 EST++N V ILR G + E +++ + V E + SPG HYAP + Sbjct: 184 ESTVINTLINPPV-ILRKGTISKEMIEKVVGVVTFSSPGEGTI--SPGTKYKHYAPGVKT 240 Query: 237 RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLK-----------EAAFNLFNY 285 +P + G + K+ + II L G K E A F Sbjct: 241 TYIKKISSPDHFNLLMGTIS-KDKKIGIIHFGLDIEGSYKNIKIENLSGNPEYASKFFYR 299 Query: 286 MKIADDSGASSIAFSSIP-NHGLGIAINNRLERAA 319 + I +P +HGL I++ +R+ER + Sbjct: 300 TLRKMEKSVDEIIILPLPEHHGLWISLEDRIERGS 334 >gi|164662685|ref|XP_001732464.1| hypothetical protein MGL_0239 [Malassezia globosa CBS 7966] gi|159106367|gb|EDP45250.1| hypothetical protein MGL_0239 [Malassezia globosa CBS 7966] Length = 471 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 92/253 (36%), Positives = 126/253 (49%), Gaps = 24/253 (9%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 ++L KA L +G +A PTETVYGL + A R+Y K RPA NPLI HVSD M Sbjct: 53 SSLEKAASHLRSGQLVAFPTETVYGLGACALRTDAAERIYHAKNRPADNPLIVHVSDRRM 112 Query: 70 VKK----HASVDPLSLHLAKLFWPGPLTLV----LDLLSTTDIHPLSTANLKTACFRVPC 121 + K + L K FWPGPLTL+ LD I T T R+P Sbjct: 113 LSKLLPSKYPYNAACEALMKAFWPGPLTLLFPVGLDDQGLPRIPSTVTCGQSTVGLRMPS 172 Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEI-PLIIDGGISKIGLEST 179 + LI G P+A PSAN SG+ S T H+ + + + I+DGG IGLEST Sbjct: 173 HPIARALISLAGVPVAAPSANASGRPSPTTAGHVFTDLGPRHVLSYIVDGGECSIGLEST 232 Query: 180 IVNVQCE-KKVRILRPGGLEIETLKRAISV-------------ELEYCVDETSTPQSPGM 225 +V+ +VR+LRPGG+ +E + +A+ +L + + P +PGM Sbjct: 233 VVDATTTPGEVRVLRPGGISVEQIAQALEQAGLSSLSLRVYGRDLARSAQQEAAPTTPGM 292 Query: 226 LKSHYAPRSQVRL 238 HY+P ++V L Sbjct: 293 KYRHYSPEARVLL 305 >gi|15921819|ref|NP_377488.1| hypothetical protein ST1526 [Sulfolobus tokodaii str. 7] gi|328877147|pdb|3AJE|A Chain A, Crystal Structure Of S. Tokodaii Sua5 Complexed With L-Threonine And Amppnp gi|15622606|dbj|BAB66597.1| 352aa long conserved hypothetical protein [Sulfolobus tokodaii str. 7] Length = 352 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 105/326 (32%), Positives = 156/326 (47%), Gaps = 19/326 (5%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + ++ A + + G +A PTETVYGL ++ + A ++++ K RP NPLI H++D + Sbjct: 15 DKIKIAADVIRNGGTVAFPTETVYGLGANAFDGNACLKIFQAKNRPVDNPLIVHIADFNQ 74 Query: 70 VKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + A P L +A++ WPGPLT VL T + TA L T R+P +L Sbjct: 75 LFEVAKDIPDKVLEIAQIVWPGPLTFVLK--KTERVPKEVTAGLDTVAVRMPAHPIALQL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I G P+A PSAN + + S T + ++ + + +IIDGG + G+ESTI+NV E Sbjct: 133 IRESGVPIAAPSANLATRPSPTKAEDVI-VDLNGRVDVIIDGGHTFFGVESTIINVTVEP 191 Query: 188 KVRILRPGGLEIETLKRAISV----ELEYCVDETSTPQSPGMLKSHYAPRSQVRL---RA 240 V +LRPG IE LK+ E E +PGM HYAP +++ L R Sbjct: 192 PV-LLRPGPFTIEELKKLFGEIVIPEFAQGKKEAEIALAPGMKYKHYAPNTRLLLVENRN 250 Query: 241 IHVNPREALIRFGNVPI---KNIENAIISLN---LSKTGKLKEAAFNLFNYMKIADDSGA 294 I + L + V + K + L L L E A NLF+ + D Sbjct: 251 IFKDVVSLLSKKYKVALLIPKELSKEFEGLQQIILGSDENLYEVARNLFDSFRELDKLNV 310 Query: 295 SSIAFSSIPNHGLGIAINNRLERAAA 320 P G+G AI NR +A+ Sbjct: 311 DLGIMIGFPERGIGFAIMNRARKASG 336 >gi|329121079|ref|ZP_08249710.1| Sua5/YciO/YrdC/YwlC family protein [Dialister micraerophilus DSM 19965] gi|327471241|gb|EGF16695.1| Sua5/YciO/YrdC/YwlC family protein [Dialister micraerophilus DSM 19965] Length = 345 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 116/333 (34%), Positives = 166/333 (49%), Gaps = 30/333 (9%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S+ + K + G +A PTETVYGL ++ + A +++Y+ K RP+ NPLI HV+D S Sbjct: 14 SDLVNKLGYIIRKGGLVAFPTETVYGLGGNALSSKAAKKIYKAKGRPSDNPLIVHVADKS 73 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA-NLKTACFRVP-CGFTK 125 VK +++ L L L+WPGPLT+V + DI P T+ L T R P T+ Sbjct: 74 QVKNFVKNINDLEHKLMDLYWPGPLTIVFE---KKDIIPYETSGGLDTVAIRCPDNNATR 130 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LI PLA PSAN S + S T K +L + + I +ID G SKIGLESTIV V Sbjct: 131 ALIRAAKVPLAGPSANISTRPSPTYAKSVL-NDLDGRINAVIDNGDSKIGLESTIVAVN- 188 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETS-TPQSPGMLKSHYAPRSQVRLRAIHVN 244 E K+ I RPG + E L L+ + +++ P++PGM HYAP + + + + N Sbjct: 189 EGKIIIYRPGAITQEMLSELAPTSLDTALKKSNEKPKAPGMKYRHYAPSAPLEIYVGNEN 248 Query: 245 PREALIRFGNVPIKNIENAIISLNLSKT--------------GKL---KEAAFNLFNYMK 287 E I + + N + I +SK GK K A NLF + Sbjct: 249 KVEESI----LEVSNENDKIYGFFVSKETAEKLPKNSIVFCWGKRSDKKSMARNLFKGLL 304 Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + I N G+G+AI NRL++A+ Sbjct: 305 FFNSKKIDQIIGEGTDNKGIGMAIMNRLKKASG 337 >gi|257899727|ref|ZP_05679380.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium Com15] gi|257837639|gb|EEV62713.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium Com15] Length = 311 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 98/307 (31%), Positives = 160/307 (52%), Gaps = 20/307 (6%) Query: 32 VYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPG 90 +YGL ++ P +++++ +K RP NPLI HV+ VK++ + P + + K FWPG Sbjct: 1 MYGLGANALLPNTVKKVFSVKGRPQDNPLIVHVASFEQVKEYVDNFHPEAEKIVKNFWPG 60 Query: 91 PLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISIT 149 PLTL+ + T + + T L TA FR+P T ++IE G PL PSAN SG+ S T Sbjct: 61 PLTLIFKIKKDT-LPSVVTGGLSTAAFRMPDNKKTLEVIELSGVPLVGPSANTSGKPSPT 119 Query: 150 NVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV-RILRPGGLEIETLKRAISV 208 H+ + +I II+ G ++IG+EST++++ + ILRPG + E ++ I Sbjct: 120 TADHVF-HDLQGKITGIIEDGATRIGVESTVLDLSNPTAMPMILRPGAVTKEQIEAVIGS 178 Query: 209 EL---EYCVDETSTPQSPGMLKSHYAPRSQVRL-----RAIHVN-PREALIRFGNVPIKN 259 + ++ V E TP++PGM HY+P ++V + +I V + IR G + Sbjct: 179 PVAVDQHLVKENETPKAPGMKYKHYSPDTRVLMVRDGDWSIAVQWAKNKKIRAGVIASPE 238 Query: 260 IENAI----ISLNLSKTGKLKEAAFNLFNYMKIADDS--GASSIAFSSIPNHGLGIAINN 313 I + + ++ + ++ AA LF ++ D+ G I P GLG A N Sbjct: 239 IADQVRTDTAAVYMYNDNSVEAAAKGLFAGLRGLDEPTLGLDLIFVQVYPETGLGNAYMN 298 Query: 314 RLERAAA 320 RL++AA Sbjct: 299 RLKKAAG 305 >gi|163848701|ref|YP_001636745.1| Sua5/YciO/YrdC/YwlC family protein [Chloroflexus aurantiacus J-10-fl] gi|222526643|ref|YP_002571114.1| Sua5/YciO/YrdC/YwlC family protein [Chloroflexus sp. Y-400-fl] gi|163669990|gb|ABY36356.1| Sua5/YciO/YrdC/YwlC family protein [Chloroflexus aurantiacus J-10-fl] gi|222450522|gb|ACM54788.1| Sua5/YciO/YrdC/YwlC family protein [Chloroflexus sp. Y-400-fl] Length = 351 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 92/240 (38%), Positives = 134/240 (55%), Gaps = 15/240 (6%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV-- 64 T A+ A E L G +A PTETVYGL + + A+ ++ K RPA +PLI H+ Sbjct: 8 TSPAAIAMAGELLRRGELVAFPTETVYGLGGHALDERAVAAIFTAKGRPANDPLIVHITA 67 Query: 65 -SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG 122 +D+ +V A+V PL+ LA WPGPLTL++ PL+ TA +T RVP Sbjct: 68 ATDLPLVA--ATVPPLAGRLAAACWPGPLTLIVPRHPRV---PLTVTAGRETVAVRVPSH 122 Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 ++L+ G P+A PSANR G S T H+L + + I +IDGG + IG+EST++ Sbjct: 123 PIAQELLRAAGVPVAAPSANRFGHTSPTTADHVL-ADLDGRIAAVIDGGATPIGIESTVL 181 Query: 182 NVQCEKKVRILRPGGLEIETLKRAIS-VEL--EYCVDETSTPQSPGMLKSHYAPRSQVRL 238 + + +LRPGG+ +ETL I V+L + DE +PG+L+ HYAP ++ L Sbjct: 182 DCTTDPPT-LLRPGGISLETLTDLIGEVQLRSQPTADEAHGLTAPGLLERHYAPDHELWL 240 >gi|312134922|ref|YP_004002260.1| sua5/ycio/yrdc/ywlc family protein [Caldicellulosiruptor owensensis OL] gi|311774973|gb|ADQ04460.1| Sua5/YciO/YrdC/YwlC family protein [Caldicellulosiruptor owensensis OL] Length = 348 Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 112/334 (33%), Positives = 159/334 (47%), Gaps = 25/334 (7%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L KA L G +A PTETVYGL ++ A+ +++ K RP NPLI H+S Sbjct: 12 DYEKLEKAASILREGGLVAFPTETVYGLGANALLKDAVDKIFWAKGRPQDNPLIVHISSK 71 Query: 68 SMVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 M+ A + D L + FWPGPLT+VL I TA L T R+P Sbjct: 72 EMLGMCAEITDERVYMLIERFWPGPLTIVLP--KKNSIPDNVTAGLSTVGVRMPANKIAL 129 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +LI P+A PSAN SG+ S T KH++ + K + +IIDGG GLEST+V++ Sbjct: 130 ELIRLSDVPVAAPSANVSGKPSPTEAKHVIEDLMNK-VDVIIDGGKCSFGLESTVVDLSG 188 Query: 186 EKKVRILRPGGLEIETLKRAI-SVELEYCVDETST---PQSPGMLKSHYAP-------RS 234 + V ILRPG + LK + ++E V E T P+SPGM HYAP + Sbjct: 189 GEAV-ILRPGAISYYALKEVLGNIEYSKAVVEGLTGTVPRSPGMKYKHYAPDAKLIIVKG 247 Query: 235 QVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKL--------KEAAFNLFNYM 286 ++ R +N + + F + + + N KL KE NLF+ + Sbjct: 248 RIDKRIDKINEMKKKLEFKAHRVGILCFYETAHNFDSQYKLILGSMFDAKECGRNLFSLL 307 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + + G I + +A+ NRL +AAA Sbjct: 308 RKFNQLGVDYILCEWGEFNLEFLALENRLYKAAA 341 >gi|257439052|ref|ZP_05614807.1| Sua5/YciO/YrdC/YwlC family protein [Faecalibacterium prausnitzii A2-165] gi|257198542|gb|EEU96826.1| Sua5/YciO/YrdC/YwlC family protein [Faecalibacterium prausnitzii A2-165] Length = 302 Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 87/240 (36%), Positives = 131/240 (54%), Gaps = 12/240 (5%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 + A+ KA + L G +A+PTETVYG+A D+RN A+ +++ K RP NPLI HV+ Sbjct: 13 AEGEAIAKAADLLRRGELVALPTETVYGIAADARNGAAVAKIFVAKGRPQDNPLIVHVTG 72 Query: 67 ISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 M+ S P L F PGPLT+++ ++ A L T R+P Sbjct: 73 PEMLPGLVSEVPERAQLLMAAFCPGPLTIIMP--RGPEVAAECCAGLDTVGIRMPSHPVA 130 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + +I G A PSAN SG+ S TN + + + + +PLI+DGG +G+EST+++V Sbjct: 131 RAVIAQSGCAFAAPSANLSGKPSPTNAQDVF-TDMDGRLPLILDGGECDVGVESTVISVV 189 Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYC------VDETSTPQSPGMLKSHYAPRSQVRL 238 EK + RPG + +E L+RA+ E+E + E + +SPGM HYAP++ V L Sbjct: 190 GEKPT-LFRPGHITLEDLERALGEEVEVSKAILEKLPEGAVVRSPGMKYKHYAPKADVTL 248 >gi|171915109|ref|ZP_02930579.1| Sua5/YciO/YrdC/YwlC family protein [Verrucomicrobium spinosum DSM 4136] Length = 329 Score = 135 bits (341), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 112/336 (33%), Positives = 172/336 (51%), Gaps = 31/336 (9%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV---SDIS 68 + +A L AG +A+PTETVYGLA D+ N A+ +++ K+RPA +PLI H+ D+ Sbjct: 1 MDEAVRALSAGEVVALPTETVYGLAADALNADAVAKVFAAKERPAFDPLIVHLPHKKDLD 60 Query: 69 MVKK-HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KK 126 +V + + + + + FWPGPLT+VL + + L TA + T R + Sbjct: 61 LVAEVPEDIAEVVKKITEKFWPGPLTIVLPKKAV--VPDLVTAGMPTVAVRASNHLVFNR 118 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 + + PLA PSANR G IS T+ + + + IPLI+D G + GLESTI+ ++ Sbjct: 119 VARSLDKPLAAPSANRFGSISPTSASAV-QAELDGRIPLILDAGATMHGLESTIIRIEAA 177 Query: 187 K---KVRILRPGGLEIETLKRAISVELEYCV--DETSTPQSPGMLKSHYAPRSQVRLRAI 241 K ++ ILRPG + + LK L + +E ++PG L SHYAPR+ +RL Sbjct: 178 KPKARIIILRPGPITPDDLKPFGKPILARNLKPEEQEKLEAPGQLPSHYAPRTPLRLLE- 236 Query: 242 HVNPRE---------ALIRFGNVPIKNIENA-----IISLNLSKTGKLKEAAFNLFNYMK 287 +P E AL+ + P + ++ L+ K GKL EAA F ++ Sbjct: 237 --SPEEFTPEPGKKYALLSYRGDPDDGYSDLAEWDHVMVLSPGK-GKLPEAAVRFFFALR 293 Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRN 323 D G I +P LG+A+ +RL RA+ R+ Sbjct: 294 ELDKLGVDEIIAEPLPERELGLAMMDRLRRASVKRS 329 >gi|256842836|ref|ZP_05548324.1| Sua5 family translation factor [Lactobacillus crispatus 125-2-CHN] gi|256848800|ref|ZP_05554234.1| Sua5 family translation factor [Lactobacillus crispatus MV-1A-US] gi|295692625|ref|YP_003601235.1| sua5/ycio/yrdc/ywlc family protein [Lactobacillus crispatus ST1] gi|312977644|ref|ZP_07789391.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus crispatus CTV-05] gi|256614256|gb|EEU19457.1| Sua5 family translation factor [Lactobacillus crispatus 125-2-CHN] gi|256714339|gb|EEU29326.1| Sua5 family translation factor [Lactobacillus crispatus MV-1A-US] gi|295030731|emb|CBL50210.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus crispatus ST1] gi|310895383|gb|EFQ44450.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus crispatus CTV-05] Length = 333 Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 107/329 (32%), Positives = 159/329 (48%), Gaps = 20/329 (6%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I + + A + L G +A PTETVYGL + +++ +Y K RP+ NPLI VS Sbjct: 5 IFKKDQINDAVKLLAKGELVAFPTETVYGLGAIATKEKSVKGVYAAKGRPSDNPLIVTVS 64 Query: 66 DISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 D M+ K+A P + L K FWPGPLTL+L + + T L T FR P Sbjct: 65 DEEMMAKYAKEVPERAKKLIKHFWPGPLTLLL-FVKPGTLPDAVTGGLDTVAFRCPDDQL 123 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 T LI G+P+ PSAN S + S T +H+ + +I IID G +++GLESTI+++ Sbjct: 124 THDLIAKLGYPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDDGPTRVGLESTIIDL 182 Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 E + +LRPG + E L + ++ V + P++PGM HYAP V Sbjct: 183 SVETPI-VLRPGEITPEELSEVLGEKVLINTGKVSDKDIPKAPGMKYRHYAPSEPV---V 238 Query: 241 IHVNPRE-ALIRFGN-VPIKNIENAIISLNLSKTGK------LKEAAFNLFNYMKIADDS 292 + +P + A I F + + + +NL + K L +A NLF ++ DD Sbjct: 239 VVDDPADFAKIDFNEKTGVAALAPVLAKINLPQANKFDLGNNLVDADHNLFGGLRYFDDQ 298 Query: 293 GA-SSIAFSSIPNHGLGIAINNRLERAAA 320 +I +A NRL +AA Sbjct: 299 DDIETIYVQGFHEGEESLAYMNRLNKAAG 327 >gi|71001138|ref|XP_755250.1| translation initiation protein Sua5 [Aspergillus fumigatus Af293] gi|66852888|gb|EAL93212.1| translation initiation protein Sua5 [Aspergillus fumigatus Af293] gi|159129334|gb|EDP54448.1| translation initiation protein Sua5 [Aspergillus fumigatus A1163] Length = 433 Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 93/255 (36%), Positives = 140/255 (54%), Gaps = 26/255 (10%) Query: 8 DSNALRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 +S+A+ +A L + +P+A PTETVYGL D+ A++ +Y+ K+RP+ NPLI H+ Sbjct: 38 ESSAIEEAAHLLRTSDIPVAFPTETVYGLGADATRSAAVQGIYKAKQRPSDNPLIVHIDS 97 Query: 67 ISMVKK---HASVDP-------------LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA 110 I M+++ AS P + L + FWPGPLT++L S + + TA Sbjct: 98 IEMLERLLNPASSSPTRTTRTAKNTIPAIYQPLIERFWPGPLTILLHNPSGSLLADEVTA 157 Query: 111 NLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169 NL T R+P + LI PLA PSAN S + S T +H+ + I LI+DG Sbjct: 158 NLTTFGVRMPASPLARLLIHVADRPLAAPSANASTKPSPTAAEHVY-HDLEGRINLILDG 216 Query: 170 GISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRA---ISVELEY---CVDETSTPQSP 223 G +G+EST+V+ K ILRPGG+ IE L+ +V++ Y +D P++P Sbjct: 217 GPCGVGVESTVVD-GLSKPPAILRPGGVGIEELRTVPGWENVQIAYHDGNLDVKEVPRAP 275 Query: 224 GMLKSHYAPRSQVRL 238 GM HY+P+++V L Sbjct: 276 GMKYRHYSPKARVVL 290 >gi|47570467|ref|ZP_00241100.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus G9241] gi|47552863|gb|EAL11281.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus G9241] Length = 299 Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 102/296 (34%), Positives = 152/296 (51%), Gaps = 21/296 (7%) Query: 41 NPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLL 99 N AI +++E K RP+ NPLI H+ S + + P++ L + FWPGPLT++L Sbjct: 2 NDEAIAKIFEAKGRPSDNPLIVHIGTKSQLDGIVKEIPPVAEKLMEHFWPGPLTIILP-- 59 Query: 100 STTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSS 158 I TA L T R+P LIE P+A PSANRSG+ S T H+ Sbjct: 60 RKEGISERVTAGLNTVGVRMPDHPVALALIEEANVPVAAPSANRSGRPSPTLASHVYED- 118 Query: 159 ICKEIPLIIDGGISKIGLESTIVNVQCEKKV-RILRPGGLEIETLKRAIS-VELEYCV-D 215 + ++I I+DGG + +G+EST+++ C V ILRPGG+ E L+ I V L+ + D Sbjct: 119 LNEKIAGIVDGGATGVGVESTVID--CTSAVPTILRPGGITKEQLEAVIGMVSLDPALKD 176 Query: 216 ETSTPQSPGMLKSHYAPR--------SQVRLRAIHVNPREALIRFG---NVPIKNIENAI 264 E P+SPGM +HYAP+ S+ ++ I +E + G +++ +A Sbjct: 177 EKEKPKSPGMKYTHYAPKAPLSIVEGSREFIQLIVDKKKEEGFKVGVLTTEEYQHVYSAD 236 Query: 265 ISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + L+ L A L++ ++ D S I S PN G+G AI NRL +AA Sbjct: 237 VVLSCGVRSDLASVATKLYDVLRTFDASEVDVIFSESFPNEGIGNAIMNRLTKAAG 292 >gi|257896819|ref|ZP_05676472.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium Com12] gi|257833384|gb|EEV59805.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium Com12] Length = 311 Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 98/308 (31%), Positives = 158/308 (51%), Gaps = 22/308 (7%) Query: 32 VYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPG 90 +YGL ++ P +++++ +K RP NPLI HV+ VK++ + P + + K FWPG Sbjct: 1 MYGLGANALLPNTVKKVFSVKGRPQDNPLIVHVASFEQVKEYVDNFHPETEKIVKNFWPG 60 Query: 91 PLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISIT 149 PLTL+ + T + + T L TA FR+P T ++IE G PL PSAN SG+ S T Sbjct: 61 PLTLIFKIKKDT-LPSVVTGGLSTAAFRMPDNKKTLEVIELSGVPLVGPSANTSGKPSPT 119 Query: 150 NVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV-RILRPGGLEIETLKRAISV 208 H+ + +I IID G ++IG+EST++++ + ILRPG + E ++ I Sbjct: 120 TADHVF-HDLQGKITGIIDDGATRIGVESTVLDLSDPTAMPMILRPGAVTKEQIEAVIES 178 Query: 209 EL---EYCVDETSTPQSPGMLKSHYAPRSQVRL-------RAIHVNPREALIRFGNVPIK 258 + ++ V E TP++PGM HY+P + V + A+ + IR G + Sbjct: 179 PVAIDQHLVKENETPKAPGMKYKHYSPDTCVLMVREGDWSTAVQW-AKNKKIRVGVIASP 237 Query: 259 NIENAI----ISLNLSKTGKLKEAAFNLFNYMKIADDS--GASSIAFSSIPNHGLGIAIN 312 I + + ++ + ++ AA LF ++ D+ G I P GLG A Sbjct: 238 EISDQVRTDTAAVYMYNDNSVEAAAKGLFAGLRGLDEPTLGLDLIFVQVYPETGLGNAYM 297 Query: 313 NRLERAAA 320 NRL++AA Sbjct: 298 NRLKKAAG 305 >gi|30248949|ref|NP_841019.1| Sua5/YciO/YrdC/YwlC family protein [Nitrosomonas europaea ATCC 19718] gi|30138566|emb|CAD84857.1| SUA5/yciO/yrdC family:Sua5/YciO/YrdC/YwlC protein family [Nitrosomonas europaea ATCC 19718] Length = 339 Score = 135 bits (340), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 110/339 (32%), Positives = 175/339 (51%), Gaps = 52/339 (15%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A L +G +A PTETVYGL D P AI++++EIK RP+ +PLI H +++S ++ Sbjct: 16 ITQAVMSLRSGNVVAFPTETVYGLGADISQPQAIQKIFEIKGRPSSHPLIVHFANLSELE 75 Query: 72 KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKKLI 128 A P + LA+ FWPGPLTL+ L+ ++ PLS T +T R+P KL+ Sbjct: 76 FWAENIPATAWILAQHFWPGPLTLI---LTKSNHIPLSVTGGQETVGLRIPRHPIALKLL 132 Query: 129 ETYG--HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 E G LA PSANR G +S T H+ ++ +I +I+DGG ++GLESTIV+ + Sbjct: 133 EQLGSCKALAAPSANRFGFVSPTIADHV-KNAFNDKIEVILDGGPCEVGLESTIVSC-ID 190 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAP-------------- 232 K V ILRPGG+ + +++ + + + V + ++PG L SHYA Sbjct: 191 KDVTILRPGGISVLSIENLL--QQKVSVKSQNKIRTPGSLSSHYATATPLEICQSSESLF 248 Query: 233 -----------RSQVRLRAIHVNPR-EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAF 280 R+ V +R+IH+ P + +F + + N A GK Sbjct: 249 SRSFDLLQQGIRTAVIIRSIHLIPMLNSDDKFHYILMPNDPVAF--------GK------ 294 Query: 281 NLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 +L+ ++ DD+ I + P+ +A+ +RL RA+ Sbjct: 295 DLYATLRKLDDANFERILVEAPPDDLEWLAVADRLSRAS 333 >gi|86606322|ref|YP_475085.1| Sua5/YciO/YrdC/YwlC family protein [Synechococcus sp. JA-3-3Ab] gi|86554864|gb|ABC99822.1| Sua5/YciO/YrdC/YwlC family protein [Synechococcus sp. JA-3-3Ab] Length = 366 Score = 135 bits (340), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 109/343 (31%), Positives = 161/343 (46%), Gaps = 41/343 (11%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS---DIS--- 68 A E L G +AIPTETVYGLA N A+ ++ K+RP NPLI H+ D+ Sbjct: 16 AAEALRRGQLVAIPTETVYGLAGHGLNEQAVAEIFAAKERPRFNPLILHLPAGLDLETLQ 75 Query: 69 --MVKKHASVDPLSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-G 122 +V A L L FWPGPLTLVL + + L T+ L T R+P Sbjct: 76 GWLVDLEAFTPAARARLGSLVDTFWPGPLTLVLP--KGSRVPDLVTSGLPTVALRMPAHP 133 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 + L+ PLA PSANR G++S T+ + + + + IP I+DGG +GLEST++ Sbjct: 134 VAQALLRAVQVPLAAPSANRFGRLSPTSAQAVY-AELAGRIPYILDGGECSVGLESTVLK 192 Query: 183 VQCEKKVRILRPGGLEIETLKRAISVELEY--CVDETSTPQSPGMLKSHYAPRSQVRLRA 240 + + +LRPGG+ E L+ +++ L D +P++PG L SHYAP + L Sbjct: 193 LSPDGTPTLLRPGGIPREVLESHLNLPLSSPPAPDGKESPEAPGQLSSHYAPGKPIWLLP 252 Query: 241 I---HVNPRE--------------ALIRFGNVPIKNIEN-----AIISLNLSKTGKLKEA 278 + P + ++ F P E+ ++ L G + Sbjct: 253 TAFAQLQPEDWQQLRRLATGHSHLGILSFAAKPEALAESLSRHCPEVTFTLECLGPDPNS 312 Query: 279 AFNLFNYMKIADDSGASSIAFSSIPN--HGLGIAINNRLERAA 319 A + F D GA+++ + P GLG AI +RL RA+ Sbjct: 313 AAHAFFASLRRLDEGAATLLLAEPPPVVTGLGYAIMDRLRRAS 355 >gi|317033381|ref|XP_001395551.2| protein SUA5 [Aspergillus niger CBS 513.88] Length = 434 Score = 135 bits (340), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 87/255 (34%), Positives = 138/255 (54%), Gaps = 26/255 (10%) Query: 8 DSNALRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 ++ A+ A + L + +P+A PTETVYGL D+ A++ +Y+ K+RP+ NPLI HV Sbjct: 39 EAAAIEDAAQLLRTSDIPVAFPTETVYGLGADATRSDAVQGIYKAKQRPSDNPLIIHVDS 98 Query: 67 ISMVKK----------------HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA 110 + M+++ ++ P+ + FWPGPLT++L S + + P T+ Sbjct: 99 LGMLERLLNPTQESPSRRTSTAKNAIPPIYDSVISRFWPGPLTILLPNPSGSPLAPEVTS 158 Query: 111 NLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169 L T R+P + LI PLA PSAN S + S T +H+ + I LI+DG Sbjct: 159 KLTTFGVRMPSSPLARLLIHVTDRPLAAPSANASTKPSPTAAEHVF-HDLEGRIELILDG 217 Query: 170 GISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAI---SVELEY---CVDETSTPQSP 223 G +G+EST+V+ + ILRPGG+ IE L+ +V++ Y +D P++P Sbjct: 218 GPCGVGVESTVVDGLSDPPA-ILRPGGIGIEELRTCAGWENVQVGYHDGTLDVKEIPRAP 276 Query: 224 GMLKSHYAPRSQVRL 238 GM HY+P+++V L Sbjct: 277 GMKYRHYSPKARVVL 291 >gi|322505247|emb|CBZ14756.1| conserved hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 382 Score = 135 bits (340), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 110/359 (30%), Positives = 172/359 (47%), Gaps = 53/359 (14%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 LR+A + L G +AIPTETVYGL ++ +A +R+Y +K RP +PLICHV ++ V+ Sbjct: 12 LRRAADALLQGKLVAIPTETVYGLGGNALIESAAKRIYTVKGRPPTDPLICHVCNLDGVR 71 Query: 72 K-------HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123 + +V+ L+ + WPGPLT+V + + T R+P Sbjct: 72 RLWDLKWDEGAVE-LACAIGAALWPGPLTIVFK--ANPSLPDCVTGGSGYVGARIPNNAI 128 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP-LIIDGGISKIGLESTIVN 182 T KL+E P+A PSAN G +S T +H+ ++ LIIDGG S +G+EST+ Sbjct: 129 TLKLLEMVDVPVAAPSANTFGHVSPTTSQHVYDDLAARDPELLIIDGGQSSVGIESTVAK 188 Query: 183 VQCEKKVRILRPGGLEIETLKRAIS-------VELE----YCVDETSTPQSPGMLKSHYA 231 V+ + V +LR G + + + RAI+ VE+ C T+ +SPG L +HY+ Sbjct: 189 VESKDLVVVLRRGCITVSMIHRAIAERYPQTRVEVRDMRIMCGSMTAPMESPGQLLTHYS 248 Query: 232 PRSQVRL--------------------RAIHVNP-REALIRFGNVPIKNIENAIISL-NL 269 PR L R V P E ++ N + ++ +S ++ Sbjct: 249 PRVPSSLLTPGSLAMLTASAGVPVYVHRGKDVVPLSETIVLDFNGYLSRFRDSCLSYHDM 308 Query: 270 SKTGKLKEAAFNLFNYMKIADD-SGASSIAFSSI-------PNHGLGIAINNRLERAAA 320 S G +E F +F+ ++ + GA S+ F I N L A+ +RL RAA+ Sbjct: 309 SPDGNPEEGCFAVFDALRATETVKGAKSLVFPFISEWPHDKENEDLLAAMEDRLFRAAS 367 >gi|158321595|ref|YP_001514102.1| Sua5/YciO/YrdC/YwlC family protein [Alkaliphilus oremlandii OhILAs] gi|158141794|gb|ABW20106.1| Sua5/YciO/YrdC/YwlC family protein [Alkaliphilus oremlandii OhILAs] Length = 349 Score = 135 bits (340), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 108/341 (31%), Positives = 169/341 (49%), Gaps = 34/341 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD- 66 D + + L G +A PTETVYGL ++ + AI++++E K RP+ NPLI H++ Sbjct: 11 DRRLIVECGSILRNGGVVAFPTETVYGLGANALDANAIKKIFEAKGRPSDNPLIVHIAKK 70 Query: 67 ---ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG 122 I +VK ++ + L + FWPGPLTL L +DI P TA L T R+P Sbjct: 71 EDVIPLVK---NIPEIGRILMEKFWPGPLTL---LFEKSDIIPNEVTAGLSTVGIRMPSH 124 Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 LIE P+A PSAN SG+ S T +H++ + + + II GG +GLEST++ Sbjct: 125 PIAGALIEAAQVPVAAPSANTSGRPSPTKGQHVIEDMMGR-VDAIISGGECNVGLESTVL 183 Query: 182 NVQCEKKVRILRPGGLEIETLKR-----AISVELEYCVDETSTPQSPGMLKSHYAPRSQV 236 ++ + + ILRPGG+ E L+ A+ +E P+SPGM +HYAP++ V Sbjct: 184 DITGDIPM-ILRPGGVTKEMLEAVLGQVAVDAAIEDPSKSVEKPKSPGMKYTHYAPKADV 242 Query: 237 ---------RLRAIHVNPREALIRFGNVPI------KNIENAIISLNLSKTGKLKEAAFN 281 + I V RE + V I K++ + ++ + A Sbjct: 243 IVVEGPVEQMVMKIKVLEREYRAKGKRVGIICTEETKDLYGEAMVKSMGSRQVPETIAAC 302 Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 +F ++ D++ I ++ +G AI NRL++AA R Sbjct: 303 IFKVLREFDETDVDIILSEAVEAVEIGQAIMNRLKKAAGYR 343 >gi|311696999|gb|ADP99872.1| translation factor, SUA5 type [marine bacterium HP15] Length = 329 Score = 135 bits (340), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 98/323 (30%), Positives = 155/323 (47%), Gaps = 14/323 (4%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 + T S L KA L AG +AIPTETVYGLA D+ N A+R+++E K+RP +PLI H Sbjct: 7 LDATQSGDLEKAASLLLAGHLVAIPTETVYGLAADASNDQAVRKVFEAKQRPVGHPLIVH 66 Query: 64 VSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 V+ + P + L + FWPGPLTL+L + + T R+P Sbjct: 67 VASPDRISLWVDQIPDTARRLVQAFWPGPLTLLLP--KKSGVSDFITGGNPGVAVRMPAH 124 Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 T ++ G L PSAN G+IS TN +H+L + + +I ++DGG +G+ESTIV Sbjct: 125 PATLAAMQRLGRDLVAPSANPYGRISPTNAEHVL-AGLSGKIEAVLDGGDCSVGIESTIV 183 Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQV----- 236 ++ + V I RPG + ++ + + L + ++ PG +K HY P + Sbjct: 184 DLTGDTPV-IARPGQIAKSDIEACLGIAL--APGKAASQAVPGSVKRHYQPVTPTVGVAT 240 Query: 237 -RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 R + A + G + ++ + S ++ + E A L+ M D + Sbjct: 241 DRFAGLLPEVTPAGEKIGVIWWQSAPGELASESIMLSADPNEYARMLYTAMHAMDKANVD 300 Query: 296 SIAFSSIPNHGLGIAINNRLERA 318 I P +A+++RL RA Sbjct: 301 RIVIELPPRESQWLAVHDRLGRA 323 >gi|284047802|ref|YP_003398141.1| Sua5/YciO/YrdC/YwlC family protein [Acidaminococcus fermentans DSM 20731] gi|283952023|gb|ADB46826.1| Sua5/YciO/YrdC/YwlC family protein [Acidaminococcus fermentans DSM 20731] Length = 368 Score = 135 bits (340), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 110/331 (33%), Positives = 166/331 (50%), Gaps = 30/331 (9%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L A L G +A PTETVYGL D N A R+++ K RPA NPLI H+S+ + Sbjct: 18 LAPAARLLQQGEVVAFPTETVYGLGADGLNGEACRKIFAAKGRPADNPLILHISEKEEIL 77 Query: 72 KHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 S + P++ L + FWPGP+TL++ + I + TA +T R P + LI Sbjct: 78 PLTSGLSPMAEKLMEAFWPGPMTLIVP--KSDRIPEVVTAGQETVAVRFPSNPVARALIR 135 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PLA PSAN+SG+ S TN + +L + I ++DGG IG+ESTI++ V Sbjct: 136 LTGRPLAAPSANKSGKPSPTNAQDVL-QDMDGIIGGVVDGGACDIGVESTIIDTTGTVPV 194 Query: 190 RILRPGGLEIETLKRAIS-VELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 ILRPGG+ E ++ + VEL+ V P++PGM HYAP++ + L + E Sbjct: 195 -ILRPGGITEEMIQEVMGEVELDPGLVRPDQKPKAPGMKYRHYAPKAPMVL----IEGPE 249 Query: 248 ALIRFGNVPIK----NIENAIISLN-------------LSKTGK-LKEAAFNLFNYMKIA 289 A + I ++ +++L+ + GK L + A NL+ ++ Sbjct: 250 AGLGVIRAAIMAEAWGLKVGVLALDETVGHLPHAAHLVICNAGKDLGDLAENLYTELREF 309 Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 D I + GLG+AI NR+ ++A Sbjct: 310 DRQQVDIILGEGVSTRGLGLAIMNRMRKSAG 340 >gi|299143533|ref|ZP_07036613.1| Sua5/YciO/YrdC/YwlC family protein [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518018|gb|EFI41757.1| Sua5/YciO/YrdC/YwlC family protein [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 349 Score = 135 bits (340), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 99/324 (30%), Positives = 159/324 (49%), Gaps = 24/324 (7%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVD 77 L G + PTETVYGL + + TA + ++ K RP NPLI H+++IS + V Sbjct: 25 LKNGKLVVFPTETVYGLGANGLDETACKNIFNAKGRPGDNPLILHIAEISQLDDLVEDVS 84 Query: 78 PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLA 136 + L +FWPGPLT++ ++ I + +A L T R+P +++++ P+A Sbjct: 85 ESARDLIDMFWPGPLTMIFK--KSSKIPDVVSAGLDTVAVRMPSHKIAREILKDCMIPIA 142 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SG+ S T+ K + + ++ +I+DGG + +G+EST+V++ + ILRPG Sbjct: 143 APSANLSGKPSPTSFKRVF-EDLDNKVDIIVDGGRADVGIESTVVDMTVNPPM-ILRPGK 200 Query: 197 LEIETLKRAISVELEYCVDETST----PQSPGMLKSHYAPRSQV-----RLRAI--HVNP 245 + E LK I S+ P+SPG HYAPR++ L + +N Sbjct: 201 VTTEDLKIIIPDIKIDSATIDSSDGKIPKSPGQKYKHYAPRAEAYCFVGNLDNVVKEINK 260 Query: 246 R---EALIRFGNVPIKNIENAIIS----LNLSKTGKLKEAAFNLFNYMKIADDSGASSIA 298 R ++ G + + ++ I +NL + E A NLF ++ DD I Sbjct: 261 RISENKNLKIGVLATEETKDYYIGAHILINLGSRENMSEIASNLFEALRECDDEKVDYIY 320 Query: 299 FSSIPNHGLGIAINNRLERAAAPR 322 G+G+ I NRL +A R Sbjct: 321 TEGFELRGIGVGIMNRLLKACGGR 344 >gi|167388661|ref|XP_001738645.1| sua5 [Entamoeba dispar SAW760] gi|165898009|gb|EDR25013.1| sua5, putative [Entamoeba dispar SAW760] Length = 357 Score = 135 bits (340), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 112/332 (33%), Positives = 161/332 (48%), Gaps = 29/332 (8%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 DS + A + + G + PTETVYGL D P AI +++++K RP NPLICH+SDI Sbjct: 28 DSKLITPAAKIIQQGGLVCFPTETVYGLGADVFQPNAINQIFKVKGRPNDNPLICHISDI 87 Query: 68 SMVKK---HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 M+ K H S D + L K FWPG LT++ T + TA L T R+P Sbjct: 88 EMLNKLAAHVSED--AHKLIKRFWPGALTIIFPRNET--VPNEVTAGLNTVGVRMPSHPI 143 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + I+ P+A PSAN S + S T +H + + I +IIDGG IG+EST++ + Sbjct: 144 AYEFIKQCKTPIAAPSANLSTKPSPTIGRHCI-DDLNGRIEMIIDGGACDIGVESTVLLL 202 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDET----STPQSPGMLKSHYAP------- 232 E ILRPGG+ +E L+ I Y + + P +PGM HYAP Sbjct: 203 GNEHPT-ILRPGGVTLEMLREVIPSTQVYKMSTNLSLEAKPPTPGMKYRHYAPSVDTIVI 261 Query: 233 ----RSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTG-KLKEAAFNLFNYMK 287 RS+ + H + R G V ++E+ +L + TG + K A LF M+ Sbjct: 262 TGDKRSEKLIELCHEYMKSGK-RVG-VVCWSLESLNCTLFMKVTGDRYKGMAHALFTDMR 319 Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 D I + G+A+ NR ++AA Sbjct: 320 DLDGK-VDIILIEGVQEIKEGLAVMNRAKKAA 350 >gi|239617335|ref|YP_002940657.1| Sua5/YciO/YrdC/YwlC family protein [Kosmotoga olearia TBF 19.5.1] gi|239506166|gb|ACR79653.1| Sua5/YciO/YrdC/YwlC family protein [Kosmotoga olearia TBF 19.5.1] Length = 342 Score = 135 bits (340), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 111/336 (33%), Positives = 166/336 (49%), Gaps = 35/336 (10%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + +A +L G +A PTETVYGL ++ + A +++E K RP NPLI HVS I Sbjct: 14 DKGIILRAARYLQKGELVAFPTETVYGLGANALDAKAASKIFEAKGRPQDNPLIVHVSSI 73 Query: 68 SMVKKHASVDPLSLH--LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 M ++ +D L+ + L +L WPGP+T++ + I + TA L R P Sbjct: 74 EMAQELV-LDDLNDYKWLVELLWPGPVTIIFR--KSRRIPDIVTAGLPNVGIRFPSHPVA 130 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 +KLIE G P+A PSAN SG+ S T+ H++ + I ++ G + GLESTIV++ Sbjct: 131 QKLIEIAGLPIAAPSANLSGRPSPTDEFHVI-EDMDGRIACMLLAGKTLFGLESTIVDL- 188 Query: 185 CEKKVRILRPGGLEIETLKRAIS----VELEYCVDETSTPQ-SPGMLKSHYAPRSQVRLR 239 K +LRPG + +E LK E ++ S P +PGM HY+P+ + L Sbjct: 189 SRGKPTLLRPGPISVERLKTLFPDLEVPEFVKAEEKYSGPALAPGMKYRHYSPK--IELI 246 Query: 240 AIHVNPREALIRFGNVPIKNIE-NAIISLN---------------LSKTGKLKEAAFNLF 283 + +PRE R+ + E N+II + L L E A NLF Sbjct: 247 LVEGDPRE---RYKEIITFAFEKNSIILCSRETEHLYPGEIKRRVLGSRDNLYEVAANLF 303 Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 ++ + I + P G+G+AI NRL +AA Sbjct: 304 YALREPGEE-FERIVSEAFPETGVGLAIMNRLRKAA 338 >gi|255718989|ref|XP_002555775.1| KLTH0G17116p [Lachancea thermotolerans] gi|238937159|emb|CAR25338.1| KLTH0G17116p [Lachancea thermotolerans] Length = 401 Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 105/355 (29%), Positives = 162/355 (45%), Gaps = 43/355 (12%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 T+ N L A D + PTETVYGL S N ++ +Y+ K RP+ NPLI H+S Sbjct: 43 TEQNLLEAARTIRDTDDTVGFPTETVYGLGGSSLNDKSVLNIYKAKNRPSDNPLISHISS 102 Query: 67 ISMVKKH-----------ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115 I + + ++ + L + WPGPLT++L + + + L+TA+ T Sbjct: 103 IDQLNRKIYGQESCSDILQNIPQIYRSLTEKLWPGPLTILLPVPQQSTLSKLTTADQPTF 162 Query: 116 CFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174 R+P + LI P+A PSAN+S + S T H+ + IPLI+DGG + Sbjct: 163 AVRIPSNPIARALIALSDTPIAAPSANQSTRPSPTLASHVF-HDLKGRIPLILDGGACSV 221 Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRA-------ISVELEYCVDETSTPQSPGMLK 227 G+EST+V+ + +LRPGG E ++ VE + V E ++PGM Sbjct: 222 GVESTVVDGLVSPPL-LLRPGGFTWEQIRSMGGPQWVDCKVENKKTVSEGEKVRTPGMKY 280 Query: 228 SHYAPRSQVRLRAIHVNPREALIRFGNVP------IKNIENAIISLNLSKTGKL------ 275 HY+P+++V L A R NV +++ + +L+ L Sbjct: 281 RHYSPQAKVILFAPQEGSAPLEKRLENVKSVITDHARDVRGFAVLSSLTFPDNLLDDPHG 340 Query: 276 ---------KEAAFNLFNYMKIADDSGASSIAF-SSIPNHGLGIAINNRLERAAA 320 E NLF Y++ D+ I F I G G+A+ NRL +AA+ Sbjct: 341 IYRCLGSSNTEIQANLFAYLRQVDEMPNIDIIFVEGIDEEGEGLAVMNRLRKAAS 395 >gi|224534462|ref|ZP_03675038.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia spielmanii A14S] gi|224514139|gb|EEF84457.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia spielmanii A14S] Length = 333 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 107/338 (31%), Positives = 168/338 (49%), Gaps = 33/338 (9%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I SN ++KA + + G + PTETVYG+ ++ N A++ ++ +KKRP NPLI HV Sbjct: 6 IISSNQIQKAAKLIKMGELVIFPTETVYGIGANAYNEDAVKMIFLVKKRPIENPLIVHVD 65 Query: 66 DISMVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 + +K+ + P S L L K F PGPLT VL + I + NL T R+P Sbjct: 66 TVKKIKELSEYIPKSALMLIKKFSPGPLTYVLK--KSIKISRFISGNLDTVAIRIPANKI 123 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS------KIGLE 177 LI+ P+A PSAN S + S T+ + L KE+ ++ G I IG+E Sbjct: 124 ALNLIKASKVPIAAPSANISKRPSSTSFEMAL-----KELNGLVRGIIKTENKDFNIGIE 178 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAISVEL--EYCVDETST----PQSPGMLKSHYA 231 ST++ + V ILRPG + K+ I EL +Y V+ T +SPG + HY Sbjct: 179 STVIGFDLKDNVLILRPGAIT----KKMIEKELKGKYTVNYAETKIELEKSPGNIIEHYK 234 Query: 232 PRSQVRLRAIHVNPREALIRFGNVPIKN--IENAIISL-----NLSKTGKLKEAAFNLFN 284 P+ V L N R L + + I +++ + + N+ L+E A NL+ Sbjct: 235 PKIPVYLFKSQDNIRRYLNKDTKILITKPTLKSYLFNFLWDKKNIKVFNTLEEYAQNLYK 294 Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 + + ++ I + + GLG +INNR+++A++ R Sbjct: 295 EL-VNSENNYKQILSEFVKDEGLGYSINNRIKKASSNR 331 >gi|302830981|ref|XP_002947056.1| hypothetical protein VOLCADRAFT_56845 [Volvox carteri f. nagariensis] gi|300267463|gb|EFJ51646.1| hypothetical protein VOLCADRAFT_56845 [Volvox carteri f. nagariensis] Length = 374 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 109/338 (32%), Positives = 162/338 (47%), Gaps = 63/338 (18%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 +AIPTETVYGLA ++ + A+ R+Y K RPA NPLI HVS + M+ AS+ P L Sbjct: 53 VAIPTETVYGLAANALSACAVGRVYTAKNRPADNPLIVHVSSLDML---ASLYPPGWALP 109 Query: 85 KLF-------WPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPC-GFTKKLIETYGHPL 135 ++ WPGPLT+ LL + + P + T T R+P LI G PL Sbjct: 110 SVYEAIVRDLWPGPLTI---LLPRSHLVPDVVTCGQSTMAVRMPAHPVALALIAACGFPL 166 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 A PSAN SG+ S T +H+L + +PLI+DGG G+EST+++ ILRPG Sbjct: 167 AAPSANSSGRPSPTLARHVLDD-LGGRVPLILDGGACTYGVESTVLD-GLRNPPAILRPG 224 Query: 196 GLEIETLK-----RAISVELEYCVDET--STPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248 G+ E L + + VD + P +PGM HY+P + V L ++P Sbjct: 225 GITHEQLAGYPGLEGLQLYRRDFVDPQLEAAPSTPGMKYRHYSPNAPVLL----LDP--- 277 Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEA--------------------------AFNL 282 G+ P ++ + +L + KL+EA A L Sbjct: 278 ----GDAPAASVSDE--ALAARQQDKLEEARQGDLWPQRLPPYEYVLGHVSRPAAVASEL 331 Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + ++ D+ G + I + + G G+A+ NRL +AA+ Sbjct: 332 YAALRHMDEVGVAVIVVEGVRDTGAGVAVMNRLRKAAS 369 >gi|119897671|ref|YP_932884.1| hypothetical protein azo1380 [Azoarcus sp. BH72] gi|119670084|emb|CAL93997.1| conserved hypothetical protein [Azoarcus sp. BH72] Length = 343 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 86/238 (36%), Positives = 129/238 (54%), Gaps = 16/238 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 ++ A E L AG + +PTETVYGLA D+RNP A+RR++ K RPA +PLI H+ + + Sbjct: 14 IQSAAEALRAGELVGLPTETVYGLAADARNPVAVRRIFAAKGRPADHPLIVHLPALDQLS 73 Query: 72 KH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + A+V ++ L + FWPGPLTL+L + T T RVP L+ Sbjct: 74 QWAAAVPVEAVALGRAFWPGPLTLILR--RQPHVPDEVTGGQDTVGVRVPAHPAALALLA 131 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ----C 185 +G LA PSANR G+IS T H+ + + + ++IDGG ++G+ESTI+++ C Sbjct: 132 AFGSGLAAPSANRFGRISPTTAAHV-AEELGDAVAMVIDGGACEVGIESTILDLSRLDTC 190 Query: 186 EKKVRILRPGGLEIETL-----KRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238 ILRPG + + + +R + P+ G L +HYAPR+ +RL Sbjct: 191 GPV--ILRPGAISADAIAAVIGQRPLGRAESEGAGGAQAPRVAGALAAHYAPRTPMRL 246 >gi|291166474|gb|EFE28520.1| Sua5/YciO/YrdC/YwlC family protein [Filifactor alocis ATCC 35896] Length = 339 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 101/334 (30%), Positives = 164/334 (49%), Gaps = 29/334 (8%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + ++KA + G + PTETVYGL D+ NP A ++Y K RP+ NPLI H+SD+ Sbjct: 14 DDDKIKKASNIIQNGGLVIFPTETVYGLGADAFNPVASEKIYSAKGRPSDNPLILHISDL 73 Query: 68 SMVKKHASVDPLSLH-LAKLFWPGPLTLVL---DLLSTTDIHPLSTANLKTACFRVPCG- 122 M+ K P + L FWPGPLT++ D++S T L T R+P Sbjct: 74 DMLNKIVKNVPEKANKLINQFWPGPLTIIFEKKDIVSDK-----ITGGLNTVAVRMPSNP 128 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 I P+A PSAN SG+ SIT + + + + I+ S+IGLESTI++ Sbjct: 129 IALSFIRNANTPIAAPSANISGKPSITRWEDAV-EEMGNRVDAILLSEPSEIGLESTIID 187 Query: 183 VQCEKKVRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQVRLRA 240 + + + ILR G + +++AI E++ + E P++PGM HY+P ++V + + Sbjct: 188 LTQDVPM-ILRVGKISKTEIEKAIGFTEIDKTIFGEKDIPKAPGMKYKHYSPNAEVFIAS 246 Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKT------------GKLKEAAFNLFNYMKI 288 + ++ P N I ++N +K+ L+ A F F++++ Sbjct: 247 KENFVEKVKQKYKASPSCN--TVIFTMNQNKSYFKDEKVYLLGETTLQAAKF-FFHFLRK 303 Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 AD G +I I +G A+ NR ++A + Sbjct: 304 ADKEGYDTIIMEDISFDEIGEAVMNRARKSAGNK 337 >gi|331236260|ref|XP_003330789.1| SUA5 protein [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309309779|gb|EFP86370.1| SUA5 protein [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 423 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 88/247 (35%), Positives = 132/247 (53%), Gaps = 44/247 (17%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD---PLSL 81 +A PTETVYGL + + TA+ ++++ K RP+ NPLI HVS ++++K D P + Sbjct: 68 VAFPTETVYGLGASALSSTAVSKIFKAKGRPSDNPLIVHVSSLNLLKTFVPPDWNFPATY 127 Query: 82 H-LAKLFWPGPLTLVLDLLSTTD----IHPLSTANLKTACFRVPC-GFTKKLIETYGHPL 135 L + FWPGPLTL++ S+ I L T L T R+P ++ LI G P+ Sbjct: 128 QALIERFWPGPLTLLVPTTSSVQPNCPISNLVTCGLPTVAVRMPAHSISRALIAESGVPI 187 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN-VQCEKKVRILRP 194 A PSAN SG+ S T +H+ + +IP+IIDGG ++G+EST+V+ + + +VRILR Sbjct: 188 AAPSANLSGRPSPTTAQHV-ERDMKTKIPMIIDGGACQVGVESTVVDGLNPDGRVRILRL 246 Query: 195 GGLEIETLKRAISVELEYCVDET-------------------------STPQSPGMLKSH 229 GGL +E ++E C+ E + P +PGM H Sbjct: 247 GGLSVE--------DIEACLIEAGLNLSDGKPILAGVYNQDYRDKELEAKPTTPGMKYKH 298 Query: 230 YAPRSQV 236 YAP ++V Sbjct: 299 YAPHAKV 305 >gi|325982712|ref|YP_004295114.1| Sua5/YciO/YrdC/YwlC family protein [Nitrosomonas sp. AL212] gi|325532231|gb|ADZ26952.1| Sua5/YciO/YrdC/YwlC family protein [Nitrosomonas sp. AL212] Length = 346 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 107/333 (32%), Positives = 163/333 (48%), Gaps = 23/333 (6%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 +S + + A + L G +A PTETVYGL D NP AI ++Y+IK+RP +PLI H Sbjct: 13 LSSVQRDQITAAAQILRTGGTVAFPTETVYGLGADVTNPIAIDKIYKIKQRPTHHPLIVH 72 Query: 64 VSDISMVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 + +IS + A P S LA FWPGPLTL+L + I T T R P Sbjct: 73 IGNISHLHYWAKAIPDSAWKLAHHFWPGPLTLILP--RSDRIPDNVTGGQDTVGIRFPAH 130 Query: 123 -FTKKLIETYG--HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 L+ G LA PSANR G+IS T H+ + + +I+DGG +GLEST Sbjct: 131 PVALALLRALGPEKALAAPSANRFGRISPTLAAHV-HQELGNVVDMILDGGACDVGLEST 189 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAIS--VELEYCVDETSTPQSPGMLKSHYAPRSQVR 237 I++ + +ILRPG + + L+ A++ V L + ++ ++ G L +HYAP + +R Sbjct: 190 ILSFH-DGIPQILRPGSITLSELEAALNSPVILAHHINNQLI-RTSGSLPAHYAPTTPLR 247 Query: 238 LRA-----IHV------NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYM 286 + + H N R +I + N+ N +I S L+ + Sbjct: 248 VYSNTQIWQHAFILAAKNLRVLVITWSNIDKPKFSNQLIE-QFSMPEDPVAYGQQLYAKL 306 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 + D + + S P+H +AI +RL+RA+ Sbjct: 307 RQFDQAEFDYMLIESPPDHPNWLAIADRLQRAS 339 >gi|241889771|ref|ZP_04777069.1| SUA5 domain protein [Gemella haemolysans ATCC 10379] gi|241863393|gb|EER67777.1| SUA5 domain protein [Gemella haemolysans ATCC 10379] Length = 343 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 108/348 (31%), Positives = 180/348 (51%), Gaps = 35/348 (10%) Query: 2 QIMSITDSNA----LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 +I++I+ S + K E+ G +AIPTETVYGL+ ++ + A+ ++YE K RP+ Sbjct: 4 EIINISKSESKEEIYSKLTEYYKRGKLVAIPTETVYGLSANAMDDEAVSKIYEAKGRPSD 63 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKT 114 NPLI H ++S + + VD ++ KL FWPGP+TL+L++ I TA L T Sbjct: 64 NPLIVHFYEMSQLDE--IVDYSDENVKKLIDKFWPGPMTLILNVKENNGISKKVTAGLNT 121 Query: 115 ACFRVPCGFTKK-LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173 R+P T + +++ LA PSAN SG+ S T +H+ + +I +II+ S Sbjct: 122 LAVRMPSNVTARGILKETEILLAAPSANTSGKPSPTKFEHVY-HDLNGKIDVIIEDEQSD 180 Query: 174 IGLESTIVNVQCEKK-VRILRPGGL---EIETLKRAISVEL-EYCVDETSTPQSPGMLKS 228 IGLEST+++ C + + I RPG + +IE++ SV+ E + + P SPGM Sbjct: 181 IGLESTVID--CTRYPLVIARPGDITKEDIESVLGEGSVKYNEEVLTQNVAPISPGMKYR 238 Query: 229 HYAPRSQVRLRAIHVNPREALI--------RFGNVPIKNIENAIISLNLS------KTGK 274 HY+P +++ L + E LI + G + K +E+ + LN+S Sbjct: 239 HYSPEAELVL---FNDSFENLINILKDKNQKTGFITYKEMESRVDDLNVSIKYLAENEKS 295 Query: 275 LKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 ++++ NL+N ++ D+ I I A+ NRL +A + + Sbjct: 296 VEQSNKNLYNILREFDEEKVEEIFILPIEETKENKALLNRLNKAISKK 343 >gi|320591982|gb|EFX04421.1| translation initiation protein sua5 [Grosmannia clavigera kw1407] Length = 452 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 88/242 (36%), Positives = 129/242 (53%), Gaps = 28/242 (11%) Query: 23 LPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK----KHASVDP 78 +P+ PTETVYGLA D +A+R ++ +K RP+ NPLI HV D+ MV+ P Sbjct: 56 VPVGFPTETVYGLAADVTRSSAVRGIFSVKGRPSDNPLIVHVCDLDMVRGLLGTGEDGQP 115 Query: 79 LSL-----HLAKLFWPGPLTLVLDLLSTTD----IHPLSTANLKTACFRVPCG-FTKKLI 128 L L + FWPGPLT++LD+ + + P TA L+T R+P + LI Sbjct: 116 RELPAIYRPLVERFWPGPLTILLDVPDSGSGRWTLAPEVTAGLRTFGCRLPDSPLARTLI 175 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 PLA PSAN S + S T +H++ + I ++DGG +G+EST+V+ CE Sbjct: 176 RLAQAPLAAPSANASTRPSPTTAQHVV-DDLDGRIVAVLDGGPCAVGVESTVVDGLCEPP 234 Query: 189 VRILRPGGLEIETLKRAISVE----------LEYCVDET--STPQSPGMLKSHYAPRSQV 236 V +LRPGG+ + L+ E VD T + P++PGM HY+P+++V Sbjct: 235 V-VLRPGGISMAQLRSVPGWEKVQRAYRDQSAGQPVDGTTATAPRAPGMKYKHYSPKARV 293 Query: 237 RL 238 L Sbjct: 294 VL 295 >gi|119480771|ref|XP_001260414.1| translation initiation protein Sua5 [Neosartorya fischeri NRRL 181] gi|119408568|gb|EAW18517.1| translation initiation protein Sua5 [Neosartorya fischeri NRRL 181] Length = 433 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 92/255 (36%), Positives = 139/255 (54%), Gaps = 26/255 (10%) Query: 8 DSNALRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 +S+A+ +A L + +P+A PTETVYGL D+ A++ +Y+ K+RP+ NPLI H+ Sbjct: 38 ESSAIEEAAHLLRTSDIPVAFPTETVYGLGADATRSAAVQGIYKAKQRPSDNPLIVHIDS 97 Query: 67 ISMVKK---HASVDP-------------LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA 110 I M+++ AS P + L + FWPGPLT++L S + + TA Sbjct: 98 IEMLERLLNPASSSPTRTMRTARNTIPAIYQPLIERFWPGPLTILLHNPSGSLLAGEVTA 157 Query: 111 NLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169 NL T R+P + LI PLA PSAN S + S T +H+ + I LI+DG Sbjct: 158 NLTTFGVRMPASPLARLLIHVADRPLAAPSANASTKPSPTAAEHVY-HDLEGRIDLILDG 216 Query: 170 GISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRA---ISVELEY---CVDETSTPQSP 223 G +G+EST+V+ ILRPGG+ IE L+ +V++ Y +D P++P Sbjct: 217 GPCGVGVESTVVD-GLSNPPAILRPGGVGIEELRTVPGWENVQIAYHDGTLDVKEVPRAP 275 Query: 224 GMLKSHYAPRSQVRL 238 GM HY+P+++V L Sbjct: 276 GMKYRHYSPKARVVL 290 >gi|162455228|ref|YP_001617595.1| putative translation factor [Sorangium cellulosum 'So ce 56'] gi|161165810|emb|CAN97115.1| conserved putative translation factor [Sorangium cellulosum 'So ce 56'] Length = 329 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 104/321 (32%), Positives = 153/321 (47%), Gaps = 28/321 (8%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 E L G +A PTETVYGL + + A R ++E K RP NPLI HV D++ + A Sbjct: 18 EILRRGGLVAFPTETVYGLGARADDARAARGIFEAKGRPPGNPLIVHVPDVASARALADG 77 Query: 77 DPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHP 134 P LA+ WPGPLTL++ + + A T RVP + L++ G P Sbjct: 78 WPADAERLAQAMWPGPLTLIV-ARRPDRVAGVVAAGGPTVAIRVPVHPIARALLDAVGLP 136 Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194 +A PSANRS +IS T +H+ S+ I I+DGG + +G+ESTIV+V R+LRP Sbjct: 137 IAAPSANRSTEISPTTAEHV-EKSLGGRIDAILDGGPTAVGIESTIVDV-TRSPARVLRP 194 Query: 195 GGLEIETLKRAISVELEYCVDETSTPQ----SPGMLKSHYAPRSQVRL-----------R 239 G + E + A V ++ + P SPG HYAPR+QV L R Sbjct: 195 GHVTAEAI--AALVPVQAAAGLVTAPAERAPSPGTHARHYAPRAQVALVPAHAVRGELDR 252 Query: 240 AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF 299 A R + +G+ ++ + + AA + +D+G I Sbjct: 253 AAQAGSRAGAVEYGSRTATGPHAELLPGDPAGYAAALYAALHRL------EDAGCDVIVI 306 Query: 300 SSIPNHGLGIAINNRLERAAA 320 +++P A+ +RL RA+A Sbjct: 307 AAVPEDPAWDAVRDRLTRASA 327 >gi|21227350|ref|NP_633272.1| SUA5 protein [Methanosarcina mazei Go1] gi|20905707|gb|AAM30944.1| SUA5 protein [Methanosarcina mazei Go1] Length = 364 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 118/355 (33%), Positives = 175/355 (49%), Gaps = 37/355 (10%) Query: 2 QIMSITDSN---ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58 +I+ +++ N + +A E + G +A PTETVYGL D NP + +++E K+RP N Sbjct: 12 RILRVSEVNFDVIIDEAAEIIRKGGTVAFPTETVYGLGADGLNPDTVLKIFEAKERPPGN 71 Query: 59 PLICHVSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 PL V +KK A P +L L FWPGPLT+VL+ T + +++ NL T Sbjct: 72 PLSLLVHSREDIKKVAKNIPEKALLLMDTFWPGPLTIVLEKKDT--VPEITSGNLPTIGL 129 Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P +LI+ G PLA PSAN SG+ S + H+L + + I +IDGG + IGL Sbjct: 130 RMPDHRIPLELIKRAGTPLAAPSANLSGKPSPSLAIHVL-ADLAGRIDAVIDGGGTAIGL 188 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAIS------VELEYCVDETSTPQSPGMLKSHY 230 EST+V++ E V +LR G + I L++ I EY + + G SHY Sbjct: 189 ESTVVDLTVEPPV-VLRIGAVGIGELEKVIGKIRPTYAGAEYGSGKLMPEKQAGQKYSHY 247 Query: 231 APRSQVRL----RAIHVNPREALIRFGNVPIKNIENAIIS-----------LNLSK---T 272 P +QV L V+ + ++ +V ++S LN+ Sbjct: 248 TPNTQVVLVEGKSEEKVSEQIGILLEEHVSKGQKAGLLLSDETAGFFTAEELNVHDCFLL 307 Query: 273 GKLKE---AAFNLFNYMKIADDSGASSI-AFSSIPNHGLGIAINNRLERAAAPRN 323 G KE AA LF ++ D +G I A S + GLG A+ NRL AA+ R+ Sbjct: 308 GSRKEPEGAAKRLFEGLRTLDAAGLDVILADGSFSHSGLGAALINRLREAASVRH 362 >gi|119871892|ref|YP_929899.1| Sua5/YciO/YrdC/YwlC family protein [Pyrobaculum islandicum DSM 4184] gi|119673300|gb|ABL87556.1| translation factor SUA5 [Pyrobaculum islandicum DSM 4184] Length = 349 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 98/327 (29%), Positives = 163/327 (49%), Gaps = 17/327 (5%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D++ +R A E L G +A PTETVYGL + + ++++ K+RP NPLI HV + Sbjct: 12 DADVIRFAAEVLKRGGIVAAPTETVYGLFTHAYSDGGCAKVFKAKERPPDNPLIVHVDSV 71 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 M + A + + + + WPGP+TLV+ S + TA L T R P Sbjct: 72 EMAAQIAYIPEEIVDVLRRIWPGPITLVMK--SRGAVSRCVTAGLDTVAVRAPAHPIPLA 129 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 +I+ P+A PSAN++G+ S T +H++ + E+ +IIDGG + G+ESTI++V + Sbjct: 130 IIKELEAPIAGPSANKAGRPSPTTAEHVV-EDLNGEVDVIIDGGPTFFGVESTIIDVTRK 188 Query: 187 KKVRILRPGGLEIETLKRAIS-VELEYCVD---ETSTPQSPGMLKSHYAPRSQVRLRAIH 242 + +LRPG +E L++ VE+ ET +PGM HYAP + + + Sbjct: 189 PPI-LLRPGPFTVEELEKYFGPVEIPPVARGLIETDVALAPGMKYKHYAPNTPLVIVHFD 247 Query: 243 VNPREALIRFGNVPIKNI------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296 ++ +R + + + NA + + + L E A NL+ ++ D Sbjct: 248 LSLAVETLRSKGLKVAVLCATGRCTNADVVIKMGD--DLYEVAKNLYRSLRELDRFSVDI 305 Query: 297 IAFSSIPNHGLGIAINNRLERAAAPRN 323 ++ G+G+AI NRL +A+ R Sbjct: 306 GVVPAVEETGIGLAIMNRLRKASGHRE 332 >gi|330916672|ref|XP_003297514.1| hypothetical protein PTT_07940 [Pyrenophora teres f. teres 0-1] gi|311329751|gb|EFQ94374.1| hypothetical protein PTT_07940 [Pyrenophora teres f. teres 0-1] Length = 447 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 87/249 (34%), Positives = 132/249 (53%), Gaps = 25/249 (10%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK- 71 R A E D P+A PTETVYGL D+ A++ ++ K RPA NPLI HV + ++ Sbjct: 47 RAAKELQDTNNPVAFPTETVYGLGADATRSAAVKEIFARKGRPADNPLIVHVHSLPQLRA 106 Query: 72 ------------KHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 K A DP+ + + FWPGP+T++L + + + P TA L T Sbjct: 107 LLVGKLEAEGDGKIAGKDPIPEIYRPVIECFWPGPITIILPVPKNSILAPEVTAGLSTFG 166 Query: 117 FRVPCGFTK-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R+P L+ G PLA PSAN S + S T +H+ + +++ LIIDGG ++G Sbjct: 167 ARMPRSIIALSLLRLCGRPLAAPSANASTRPSPTAAEHV-HDDLREKLDLIIDGGPCEVG 225 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVE------LEYCVDETSTPQSPGMLKSH 229 +EST+V+ ILRPGG+ +E L++ E + +++S P++PGM H Sbjct: 226 VESTVVDGLSSPPA-ILRPGGVTVEQLRQCPGWESVVVGYKDKQAEDSSKPRAPGMKYRH 284 Query: 230 YAPRSQVRL 238 Y+P++ V L Sbjct: 285 YSPKASVLL 293 >gi|269860590|ref|XP_002650015.1| hypothetical protein EBI_24439 [Enterocytozoon bieneusi H348] gi|220066566|gb|EED44043.1| hypothetical protein EBI_24439 [Enterocytozoon bieneusi H348] Length = 334 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 105/313 (33%), Positives = 165/313 (52%), Gaps = 24/313 (7%) Query: 24 PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK--HASVDPLSL 81 P+ IPTETVYGLA N + +Y+IK RP+ NPLI H+S+++M+K ++ P Sbjct: 24 PVVIPTETVYGLAGVINNDNILSNIYQIKGRPSDNPLIVHISNLNMLKSLIKETILPEYA 83 Query: 82 HLAKLFWPGPLTLVLDLLSTTDIHPLSTAN-LKTACFRVPCGFT-KKLIETYGHPLAIPS 139 L K +WPGPLTL+ + ++ + N + T R+P KLI+ G PLA PS Sbjct: 84 VLIKKYWPGPLTLIFK--ANDNVSNIVKGNHMDTIAIRMPNNSKLLKLIDKLGIPLAAPS 141 Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEI 199 AN SGQ S T + H+L + + ++ ID G GLESTI+++Q K+ ILRPG + Sbjct: 142 ANTSGQPSPTEINHVL-NDLGNKVETYIDDGKCLYGLESTILSMQ-NNKITILRPGIITK 199 Query: 200 ETLKRAISVELEYCVDETSTPQS-PGMLKSHYAPRSQVRL---RAIHVNPREALIRFGNV 255 E +++ + +++ ++ + PGM +HY+P+ V L + ++N + F N Sbjct: 200 EEIEKCLQKQVDLYTKISNINYTIPGMKYTHYSPKIDVYLFIGKDYNINMIKKAQHFKNK 259 Query: 256 PIKNI-ENAIIS--------LNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306 I + N II + KT LKE A N F+ ++ + I P Sbjct: 260 KIGIMGSNDIIVHGFKYEEIFYMGKT--LKECASNCFSGLR-HFEKKVDLIFIKGFPCID 316 Query: 307 LGIAINNRLERAA 319 G+A+ +RLE+A+ Sbjct: 317 EGVALMDRLEKAS 329 >gi|239624950|ref|ZP_04667981.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239521336|gb|EEQ61202.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 380 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 108/338 (31%), Positives = 158/338 (46%), Gaps = 38/338 (11%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +A L G +A PTETVYGL ++ + A R++Y K RP+ NPLI H+S + + Sbjct: 46 LAEAAAVLKGGGLVAFPTETVYGLGGNALDEDAARKIYAAKGRPSDNPLIAHISCAAELA 105 Query: 72 KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 P L + FWPGPLT++ ++ + +T L T R+P +LI Sbjct: 106 PLVREIPEAGRKLMEAFWPGPLTMIFP--KSSKVPYGTTGGLDTVAVRMPDDPVASRLIA 163 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G P+A PSAN SG+ S T H+ + I +IIDGG IG+ESTIV+V Sbjct: 164 LAGVPVAAPSANTSGRPSPTTADHVW-QDMNGRIDMIIDGGPVGIGVESTIVDVSSPVP- 221 Query: 190 RILRPGGLEIETLKRAISVELEYCVD--------ETSTPQSPGMLKSHYAPRSQVRL--- 238 +LRPG + +E L+ + E VD E P++PGM HYAP++++ L Sbjct: 222 SVLRPGAITMEMLREVLG---EVAVDPAILGPVKEDVKPKAPGMKYRHYAPKAELTLVET 278 Query: 239 --------RAIHVNPREALIRFGNVPIK--------NIENAIISLNLSKTGKLKEAAFNL 282 + E L++ V I E + S+ ++ + A NL Sbjct: 279 TGPVGRMVEKVKELAHEKLVQGCQVGIICTDESRSCYAEGTVRSIGARES--QESVAHNL 336 Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + ++ DD I S LG AI NRL +AA Sbjct: 337 YAVLREFDDLKVEYIFSESFSEDHLGQAIMNRLSKAAG 374 >gi|299747557|ref|XP_002911188.1| YwlC protein [Coprinopsis cinerea okayama7#130] gi|298407573|gb|EFI27694.1| YwlC protein [Coprinopsis cinerea okayama7#130] Length = 471 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 91/250 (36%), Positives = 136/250 (54%), Gaps = 27/250 (10%) Query: 12 LRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 L++A L D + PTETVYGL + N A +++ K RP NPLI HVS ++M+ Sbjct: 111 LKQAAHHLCDLHETVVFPTETVYGLGAVATNGDAASKIFSTKGRPPDNPLIVHVSSVTML 170 Query: 71 KKHASVDPLSLH------LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 + + + P L+ L + FWPG LTL+ + T I + +A +T R+P Sbjct: 171 E--SLLPPGYLYPKAYQVLMRHFWPGALTLLFPRNAET-IPSIISAGQQTVAIRMPSHPV 227 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN- 182 + LI G PLA PSAN SG+ S T +H+ + + ++PLIIDGG +GLEST+V+ Sbjct: 228 ARALIAVAGKPLAAPSANTSGKPSPTKAEHV-AKDLDGKVPLIIDGGSCGVGLESTVVDG 286 Query: 183 VQCEKKVRILRPGGLEIETLKRAISVEL-------------EYCVDETST-PQSPGMLKS 228 + + ++RILRPGG+ +E ++ A+ E +Y +E T P +PGM Sbjct: 287 LHEDGRIRILRPGGITVEQIENALKQEFPEGAAPSVLVHKRDYQDEEMETAPTTPGMKYR 346 Query: 229 HYAPRSQVRL 238 HY+P V L Sbjct: 347 HYSPSVPVTL 356 >gi|330840018|ref|YP_004414598.1| Sua5/YciO/YrdC/YwlC family protein [Selenomonas sputigena ATCC 35185] gi|329747782|gb|AEC01139.1| Sua5/YciO/YrdC/YwlC family protein [Selenomonas sputigena ATCC 35185] Length = 375 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 115/365 (31%), Positives = 167/365 (45%), Gaps = 55/365 (15%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + A+ +A L AG +A PTETVYGL + + A ++YE K RP+ NPLI H++ + Sbjct: 11 AAAIEEAVHLLRAGEVVAFPTETVYGLGANGFDAAACAKIYEAKGRPSDNPLILHIAHRA 70 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-K 126 M+ + A V ++ HL F PGPLTLVL + + T L T R+P Sbjct: 71 MLDEVALDVPEMAEHLLAAFAPGPLTLVLRRCAA--VPDRITGGLATVGVRMPENDAALA 128 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LI G PLA PSAN SG+ S T + +L + IPLI+DGG + G+ESTIV+V E Sbjct: 129 LIRAAGFPLAAPSANTSGRPSPTTAETVL-EDLAGRIPLILDGGPCRFGVESTIVDVTGE 187 Query: 187 KKVRILRPGGLEIETLKRAIS-VELE--YCVDE--------------------------- 216 V ILRPG + E L+ ++ V L+ E Sbjct: 188 AAV-ILRPGAITREMLEEVVADVRLDPGLAAQERAAQMSVGAMCPAAANSAEASETAGMH 246 Query: 217 --TSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLN------ 268 + P++PGM +HYAPR+ + L A A R +I + Sbjct: 247 TVAAAPRAPGMKYTHYAPRAPLTLLAAPPAALPAAFRAALAEAAGKSVGLIVTDETAAAL 306 Query: 269 -----------LSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLER 317 L ++ A +L+ ++ D+ I ++ GLG+AI NRL++ Sbjct: 307 AGEAEEDFVVRLGARKDVRSIAAHLYEALRAFDEKKVDFILGEALDESGLGLAIMNRLKK 366 Query: 318 AAAPR 322 AA R Sbjct: 367 AAGYR 371 >gi|262402565|ref|ZP_06079126.1| YrdC family protein [Vibrio sp. RC586] gi|262351347|gb|EEZ00480.1| YrdC family protein [Vibrio sp. RC586] Length = 321 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 99/328 (30%), Positives = 167/328 (50%), Gaps = 18/328 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 Q+ ++T ++ + A + L G +AIPTETVYGLA D+ P A+++++ K RPA +PL Sbjct: 4 QQLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPL 62 Query: 61 ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I H+ + + A+ + + LA+ FWPGPLT++L + P+ T L+T RV Sbjct: 63 IVHLGSAEQLCEWATDIADEAYQLAQAFWPGPLTMLLP--KAEHVSPVVTGGLETVGLRV 120 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P ++++ + +A PSAN ++S T+ + +L + ++ ++DGG + GLES Sbjct: 121 PAHPVLLEILKAHHLAVAAPSANPYKKLSPTSAQQVL-DGLNGKLAAVLDGGECQHGLES 179 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVE-LEYCVDETSTPQSPGMLKSHYAPRSQVR 237 TIV++ K +R+LR G + L + E L+ V + + PG + SHY P++ R Sbjct: 180 TIVDL-TSKPIRVLRAGPITASELSAVLGQEVLQPQVHQVAV---PGNVDSHYQPKT--R 233 Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGK-----LKEAAFNLFNYMKIADDS 292 LR I E + +V I + + N + K K L+ + D Sbjct: 234 LRVIDNVQNEFATQASDVKIALLHLSEQQANEQRLLKPMPQDAKAYGQALYRSLAEVDKW 293 Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAA 320 G I P +A+++RL RAA+ Sbjct: 294 GVDEIWLERPPQGEAWLAVHDRLRRAAS 321 >gi|110597199|ref|ZP_01385488.1| Sua5/YciO/YrdC/YwlC [Chlorobium ferrooxidans DSM 13031] gi|110341390|gb|EAT59855.1| Sua5/YciO/YrdC/YwlC [Chlorobium ferrooxidans DSM 13031] Length = 315 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 108/327 (33%), Positives = 162/327 (49%), Gaps = 21/327 (6%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 MQ + +TDS +A L++G +A PTETVYGL +P AI ++++ K RP NPL Sbjct: 1 MQTI-LTDST--EEAARILNSGCVVAFPTETVYGLGACICHPEAIGKIFQAKGRPGDNPL 57 Query: 61 ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I H+ +I + AS ++ + L + F+PGPLTLVL + + TA L T R Sbjct: 58 IVHIYNIKQLDDVASEINESAEKLIERFFPGPLTLVLK--KNKSVPDIVTAGLDTVGVRC 115 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P ++ + P+A PSAN SG S T+ H + + I I+ G S IGLES Sbjct: 116 PANPVAREFLRLACGPVAAPSANLSGLPSSTSW-HAVFKDLDGRISCILKGEESTIGLES 174 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAI-SVELEYCVDETSTPQSPGMLKSHYAPRSQVR 237 TIV+ V +LR G + E L+ + + L + S P+SPG+ HYAP++ + Sbjct: 175 TIVDCSGASPV-LLRAGAITFEALQEVVPGITLNAGTGKESRPKSPGLKYLHYAPKASIV 233 Query: 238 LRAIH----VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293 L H P A I P + + A ++ + G+ LF++ ++ D G Sbjct: 234 LCTPHEPITAEPDSAYIGLSRPP-EGVRVARHCISPEEYGR------ELFSFFRLCDAEG 286 Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAA 320 I + G+G AI +RL RAA Sbjct: 287 IRVIYCELPSSTGIGRAIRDRLTRAAG 313 >gi|51598986|ref|YP_073174.1| hypothetical protein BG0756 [Borrelia garinii PBi] gi|51573557|gb|AAU07582.1| conserved hypothetical protein [Borrelia garinii PBi] Length = 337 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 107/338 (31%), Positives = 164/338 (48%), Gaps = 34/338 (10%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 I SN ++KA +F+ G + PTETVYG+ ++ N A++ ++ +KKR NPLI HV Sbjct: 5 EIIRSNQIQKAAKFIKTGELVVFPTETVYGIGANAYNEDAVKMIFLVKKRSIQNPLIVHV 64 Query: 65 SDISMVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 + +K+ P S L L K F PGPLT VL + I + NL T R+P Sbjct: 65 DTVKKIKELTEYIPKSALMLIKRFSPGPLTYVLK--KSIKISRFVSGNLDTVAIRIPANK 122 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS-------KIG 175 LI+ P+A PSAN S + S TN + L KE+ ++ G I IG Sbjct: 123 IALNLIKASKVPIAAPSANISKRPSATNFEMAL-----KELNGLVRGIIKLEENKDFNIG 177 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELE--YCVDETST----PQSPGMLKSH 229 +EST++ + V ILRPG + K+ I EL+ Y V+ T +SPG + H Sbjct: 178 IESTVIGFDLKDNVIILRPGAIT----KKMIEKELKGRYTVNYAETKIELEKSPGNIIEH 233 Query: 230 YAPRSQVRLRAIHVNPREALIRFGNVPIKN--IENAIISL-----NLSKTGKLKEAAFNL 282 Y P+ V L N R L + + I + + + + N++ L+E A NL Sbjct: 234 YKPKIPVYLFKSQDNIRRYLNKDTKILITKPTLNSYLFNFLWDKKNITVFNTLEEYAQNL 293 Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + + I ++ I + + LG +INNR+ +A++ Sbjct: 294 YKEL-IKSENNYKQILSEFVKDEELGYSINNRIRKASS 330 >gi|291460250|ref|ZP_06599640.1| SUA5/YciO/YrdC family protein [Oribacterium sp. oral taxon 078 str. F0262] gi|291417197|gb|EFE90916.1| SUA5/YciO/YrdC family protein [Oribacterium sp. oral taxon 078 str. F0262] Length = 368 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 109/363 (30%), Positives = 167/363 (46%), Gaps = 55/363 (15%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + +A E + G +A PTETVYGL ++ +P A R++Y K RP+ NPLI HVS I Sbjct: 9 EGIEEAAEIIRRGGLVAFPTETVYGLGGNALSPEAARKIYAAKGRPSDNPLIVHVSGIKD 68 Query: 70 VKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP---CGFTK 125 + + + + L FWPGPLTL+L T I ++ L T R P C Sbjct: 69 AEPLVTEITEDARRLMARFWPGPLTLILR--KTERIPRETSGGLDTVALRCPENACAL-- 124 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +LI G P+A PSAN SG+ S T H+ + + I +I+DGG IG+ES+I+++ Sbjct: 125 RLISESGVPIAAPSANLSGKPSPTEAGHV-AKDLGGRIDMILDGGPVGIGVESSILDLST 183 Query: 186 EKKVRILRPGGLEIETLK----RAISVE---LEYCVDETSTPQSPGMLKSHYAPRSQV-- 236 + +LRPG + E L + + ++ L V ET P++PGM HYAP +++ Sbjct: 184 GTPI-LLRPGAVTAEELSAFLGQKVGIDPAILSGTVSETMHPRAPGMKYRHYAPEAEMYL 242 Query: 237 --------RLRAIHVNPRE-------------------ALIRFGNVPIKNIE-------- 261 R AI RE R G + +K Sbjct: 243 VTTRLFRDRGEAIGREERELSDRRTARWIRERAERELSEGKRVGILCVKETRPFYPPDSP 302 Query: 262 NAIISLN-LSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + +S+ L ++ +LF ++ D+ I S + G+G A+ NR+ +AA Sbjct: 303 DGTLSVKVLGSREEMLTMTRSLFRLLREFDEEKKDRIYAESCSDRGVGFALMNRMRKAAG 362 Query: 321 PRN 323 R Sbjct: 363 MRE 365 >gi|20093338|ref|NP_619413.1| SUA5/yciO/yrdC family protein [Methanosarcina acetivorans C2A] gi|19918700|gb|AAM07893.1| SUA5/yciO/yrdC family protein [Methanosarcina acetivorans C2A] Length = 360 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 113/359 (31%), Positives = 177/359 (49%), Gaps = 51/359 (14%) Query: 2 QIMSITDSN---ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58 ++ +++ N L +A E + G +A PTETVYGL + +P A+R+++E K+RP N Sbjct: 12 RLFRVSEENFDAVLDEAAEIIRRGGTVAFPTETVYGLGANGLDPEAVRKIFEAKERPPGN 71 Query: 59 PLICHV---SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKT 114 PL V D+ V K+ + + L FWPGPLT+VL+ DI P +++ NL + Sbjct: 72 PLSLLVHSGEDVGKVAKN--IPEKAFRLMDSFWPGPLTIVLE---KKDIVPEITSGNLPS 126 Query: 115 ACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173 R+P +L++ G PLA PSAN SG+ S + H+L + + I +IDGG + Sbjct: 127 IGLRMPDHRIPLELVKRAGTPLAAPSANLSGKPSPSLAAHVL-ADLTGRIDAVIDGGGTA 185 Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQ-SPGMLKSHY 230 IGLEST+V++ E V +LRPG + I L++ I V Y D + P+ G +HY Sbjct: 186 IGLESTVVDMTVEPPV-VLRPGAVGIAELEKVIGKVRPTYGEPDSRAVPEKQAGQKYNHY 244 Query: 231 APRSQVRLRAIHVNPREALIRFGNVPIKNIENAIIS------------------------ 266 P +QV L + + ++ + G++ +EN++ Sbjct: 245 TPDTQVVL--VEGDRKKVSEKIGSL----LENSLREGKKVGFLLSNETAGFFASEGLSAQ 298 Query: 267 --LNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF-SSIPNHGLGIAINNRLERAAAPR 322 L + +EAA LF +++ D I S GLG A+ NRL AA+ R Sbjct: 299 ECFLLGSRDEPEEAARRLFEGLRVLDAKSLDVILVDGSFSPSGLGAALLNRLREAASLR 357 >gi|260888151|ref|ZP_05899414.1| SUA5 protein [Selenomonas sputigena ATCC 35185] gi|260862180|gb|EEX76680.1| SUA5 protein [Selenomonas sputigena ATCC 35185] Length = 377 Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 115/365 (31%), Positives = 167/365 (45%), Gaps = 55/365 (15%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + A+ +A L AG +A PTETVYGL + + A ++YE K RP+ NPLI H++ + Sbjct: 13 AAAIEEAVHLLRAGEVVAFPTETVYGLGANGFDAAACAKIYEAKGRPSDNPLILHIAHRA 72 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-K 126 M+ + A V ++ HL F PGPLTLVL + + T L T R+P Sbjct: 73 MLDEVALDVPEMAEHLLAAFAPGPLTLVLRRCAA--VPDRITGGLATVGVRMPENDAALA 130 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LI G PLA PSAN SG+ S T + +L + IPLI+DGG + G+ESTIV+V E Sbjct: 131 LIRAAGFPLAAPSANTSGRPSPTTAETVL-EDLAGRIPLILDGGPCRFGVESTIVDVTGE 189 Query: 187 KKVRILRPGGLEIETLKRAIS-VELE--YCVDE--------------------------- 216 V ILRPG + E L+ ++ V L+ E Sbjct: 190 AAV-ILRPGAITREMLEEVVADVRLDPGLAAQERAAQMSVGAMCPAAANSAEASETAGMH 248 Query: 217 --TSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLN------ 268 + P++PGM +HYAPR+ + L A A R +I + Sbjct: 249 TVAAAPRAPGMKYTHYAPRAPLTLLAAPPAALPAAFRAALAEAAGKSVGLIVTDETAAAL 308 Query: 269 -----------LSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLER 317 L ++ A +L+ ++ D+ I ++ GLG+AI NRL++ Sbjct: 309 AGEAEEDFVVRLGARKDVRSIAAHLYEALRAFDEKKVDFILGEALDESGLGLAIMNRLKK 368 Query: 318 AAAPR 322 AA R Sbjct: 369 AAGYR 373 >gi|83746071|ref|ZP_00943126.1| SUA5 protein [Ralstonia solanacearum UW551] gi|207742433|ref|YP_002258825.1| translation factor, sua5 type protein [Ralstonia solanacearum IPO1609] gi|83727254|gb|EAP74377.1| SUA5 protein [Ralstonia solanacearum UW551] gi|206593823|emb|CAQ60750.1| translation factor, sua5 type protein [Ralstonia solanacearum IPO1609] Length = 336 Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 101/321 (31%), Positives = 164/321 (51%), Gaps = 18/321 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +A L+AG +A PTETVYGL D+ NP AI R+Y +K RP+ +P+I HV D + + Sbjct: 16 LDEAARRLEAGELVAFPTETVYGLGADAENPQAIARIYALKGRPSNHPVIVHVVDGADLT 75 Query: 72 KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 A P +++ L + FWPGPLTL+L I + R P + L+ Sbjct: 76 YWADDLPGIAVQLVEAFWPGPLTLILK--RAPHIPAAVAGGQDSIGLRCPSHPVAQALLS 133 Query: 130 TYGHP---LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV-QC 185 + +A PSAN+ GQ+S T +H+ E +++G + +G+ESTIV++ + Sbjct: 134 RFKRGRGGIAAPSANKFGQVSPTTAQHVRDE--FGEAIFVLEGDGADVGIESTIVDLSRL 191 Query: 186 EKKVR--ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL-RAIH 242 ++ + +LRPG + E ++R V L + + + P++ G L++HYAPR+ + L A Sbjct: 192 DQGIGPVLLRPGAITPEDIERVTGVTL--SLPDAAAPRASGTLRAHYAPRTPLYLLAAAD 249 Query: 243 VNPREALIRFGN--VPIKNIENAIISLNLSKTGKLKEAAFN-LFNYMKIADDSGASSIAF 299 V R A + G V + + + A N L+ ++ D G +I Sbjct: 250 VPARLAALPAGQRIVWVGAPVDLPPGCDQRAAPATPAAYANTLYALLRELDRGGYHAIWV 309 Query: 300 SSIPNHGLGIAINNRLERAAA 320 ++P+ A+N+RL RAAA Sbjct: 310 ETLPDTSAWAAVNDRLRRAAA 330 >gi|207728037|ref|YP_002256431.1| translation factor, sua5 type protein [Ralstonia solanacearum MolK2] gi|206591281|emb|CAQ56893.1| translation factor, sua5 type protein [Ralstonia solanacearum MolK2] Length = 336 Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 101/321 (31%), Positives = 164/321 (51%), Gaps = 18/321 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +A L+AG +A PTETVYGL D+ NP AI R+Y +K RP+ +P+I HV D + + Sbjct: 16 LDEAVRRLEAGELVAFPTETVYGLGADAENPQAIARIYALKGRPSNHPVIVHVVDGADLT 75 Query: 72 KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 A P +++ L + FWPGPLTL+L I + R P + L+ Sbjct: 76 YWADDLPGIAVQLVEAFWPGPLTLILK--RAPHIPAAVAGGQDSIGLRCPSHPVAQALLS 133 Query: 130 TYGHP---LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV-QC 185 + +A PSAN+ GQ+S T +H+ E +++G + +G+ESTIV++ + Sbjct: 134 RFKRGRGGIAAPSANKFGQVSPTTAQHVRDE--FGEAIFVLEGDGADVGIESTIVDLSRL 191 Query: 186 EKKVR--ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL-RAIH 242 ++ + +LRPG + E ++R V L + + + P++ G L++HYAPR+ + L A Sbjct: 192 DQGIGPVLLRPGAITPEDIERVTGVTL--SLPDAAAPRASGTLRAHYAPRTPLYLLAATD 249 Query: 243 VNPREALIRFGN--VPIKNIENAIISLNLSKTGKLKEAAFN-LFNYMKIADDSGASSIAF 299 V R A + G V + + + A N L+ ++ D G +I Sbjct: 250 VPARLAALPAGQRIVWVGAPVDLPPGCDQRAAPATPAAYANTLYALLRELDRGGYHAIWV 309 Query: 300 SSIPNHGLGIAINNRLERAAA 320 ++P+ A+N+RL RAAA Sbjct: 310 ETLPDTSAWAAVNDRLRRAAA 330 >gi|149927700|ref|ZP_01915952.1| Sua5/YciO/YrdC/YwlC [Limnobacter sp. MED105] gi|149823526|gb|EDM82756.1| Sua5/YciO/YrdC/YwlC [Limnobacter sp. MED105] Length = 333 Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 100/347 (28%), Positives = 173/347 (49%), Gaps = 45/347 (12%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 ++++ +D+N +++ + L G +A PTETV+GL AI+ +++ K RP +PLI Sbjct: 4 ELLAASDAN-IQRCAQALQNGQLVAFPTETVFGLGAAVSRLDAIQGIFKAKGRPTEHPLI 62 Query: 62 CHVS-DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRV 119 HV+ ++V A + P L FWPGPLTLV + + P T + R Sbjct: 63 AHVAPGANLVGWVAELTPTMQKLMNAFWPGPLTLV---VPKGERMPFEVTGGQNSVGIRC 119 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P KL++ G P+A PSANR G++S T H+L + + IP I+DG + ++G+ES Sbjct: 120 PSHPVAIKLLKATGVPVAAPSANRFGKVSPTRASHVL-AELGDRIPFILDGDVPEVGIES 178 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQS----PGMLKSHYAPRS 234 TIV++ E++ ILRPG + ++ + V ++ V+ + TP + G L+ HY+P + Sbjct: 179 TIVSL-LEEQPAILRPGAITAAQIEAVLGVPVKSHVEVSKTPHANPRVSGALEKHYSPDA 237 Query: 235 QV------RLRAIHVNPREALI---------------RFGNVPIKNIENAIISLNLSKTG 273 +V L A+ + + + +FG V ++ + + Sbjct: 238 KVWVLQASELAALQLQNKTLCVGWTDEFLAQADALREKFGEVLVEALSD----------- 286 Query: 274 KLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 K E A L+ ++ AD+ + F + A+N+RL+RA+A Sbjct: 287 KPAEVAKALYATLRQADELACKQLLFERPGQNQEWEAVNDRLKRASA 333 >gi|145220275|ref|YP_001130984.1| translation factor SUA5 [Prosthecochloris vibrioformis DSM 265] gi|145206439|gb|ABP37482.1| translation factor SUA5 [Chlorobium phaeovibrioides DSM 265] Length = 316 Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 109/323 (33%), Positives = 161/323 (49%), Gaps = 21/323 (6%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 ITDS +A L+ G +A PTETVYGL +P A+ ++ K RP NPLI H+ Sbjct: 5 ITDSPL--EAAAILNEGKTVAFPTETVYGLGAAIDSPEALAEVFRAKGRPGDNPLIVHIG 62 Query: 66 DISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 + + AS + P + L F+PGPLTLVL ++++ TA L T R P Sbjct: 63 TPEELPRVASKLSPEAGLLVTRFFPGPLTLVLP--KSSEVPYAVTAGLDTVGVRCPAHPA 120 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + ++ P+A PSANRSG+ S T+ + + + + +I I+ G S+IGLESTIV+ Sbjct: 121 AHEFLKCCHSPVAAPSANRSGRPSATSWEAV-HNDLDGKIAAILRGNTSRIGLESTIVDC 179 Query: 184 QCEKKVRILRPGGLEIETLKRAI-SVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242 + + +LR G + +E L+ + S+ + P+SPG+ HYAPR++V Sbjct: 180 TGPRPL-MLRAGAVTLEELQAIVPSITPAGETQKNEAPKSPGLKYPHYAPRARVVTHERG 238 Query: 243 VNP-----REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297 +P A I G P+ I L T +E A LF++ + D +I Sbjct: 239 ESPAAIPSASAWIGLGTPPV-----GIALAKLCTT--HEEYARELFSFFRHCDREAIQTI 291 Query: 298 AFSSIPNHGLGIAINNRLERAAA 320 P GLG AI +RL RAA Sbjct: 292 YCELPPEKGLGRAIRDRLNRAAG 314 >gi|224532051|ref|ZP_03672683.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia valaisiana VS116] gi|224511516|gb|EEF81922.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia valaisiana VS116] Length = 335 Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 103/336 (30%), Positives = 167/336 (49%), Gaps = 28/336 (8%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I SN ++KA + + G + PTETVYG+ ++ N A++ ++ +KKRP NPLI HV Sbjct: 6 IIRSNQIQKAAKLIKMGELVVFPTETVYGIGANAYNEDAVKMIFLVKKRPINNPLIVHVD 65 Query: 66 DISMVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 + +K+ + P S L L K F PGPLT VL + I + NL T R+P Sbjct: 66 TVKKIKELSEYIPKSALMLIKKFSPGPLTYVLK--KSIKISRFVSGNLNTVAIRIPANKI 123 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK--------IG 175 LI+ P+ PSAN S + S TN + L KE+ ++ GGI K IG Sbjct: 124 ALNLIKASKVPIVAPSANISKRPSSTNFEMAL-----KELNGLV-GGIIKTTENKDFNIG 177 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETST--PQSPGMLKSHYAPR 233 +EST++ + V ILRPG + + +++ + + ET+ +SPG + HY P+ Sbjct: 178 IESTVIGFDLKDNVLILRPGAITKKMIEKELQGQYTVSYAETTIELEKSPGNIIEHYKPK 237 Query: 234 SQVRLRAIHVNPREALIRFGNVPI--KNIENAIISL-----NLSKTGKLKEAAFNLFNYM 286 V L N R L + + I +++ + + N++ L+E A NL+ + Sbjct: 238 IPVYLFKSQDNIRRYLNKDTKILITKSTLKSYLFNFLWDKKNITIFNTLEEYAQNLYKEL 297 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 + ++ I + + LG +INNR+ +A++ R Sbjct: 298 -VNSENNYKKILSEFVKDEELGYSINNRIRKASSNR 332 >gi|163857906|ref|YP_001632204.1| putative translation factor [Bordetella petrii DSM 12804] gi|163261634|emb|CAP43936.1| putative translation factor [Bordetella petrii] Length = 352 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 103/355 (29%), Positives = 173/355 (48%), Gaps = 60/355 (16%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 ++ D+ A+ +A E L AG +A PTETVYGL D++NP A+ R+Y K RP+ +P+I HV Sbjct: 7 ALPDAAAIARAAERLLAGELVAFPTETVYGLGADAQNPEAVARIYAAKGRPSNHPVIVHV 66 Query: 65 ---SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI---------------HP 106 +D+ + ++ P + L FWPGPLTL+L HP Sbjct: 67 APGADLGYWVR--NISPAARQLIDAFWPGPLTLILPRAPHAGAAVSGGQDSIGLRCPSHP 124 Query: 107 LSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHI---LSSSICKEI 163 ++ A L+ P G +A PSAN+ G +S T +H+ + + + Sbjct: 125 VAQALLRAFAAGKPGGHGG---------VAAPSANKFGHVSPTRAEHVRGEFPQEVAQGM 175 Query: 164 PLIIDGGISKIGLESTIVNV-QCEKKVR--ILRPGGL---EIETLKRAISVELEYCVDET 217 P ++DGG +++G+ESTIV++ + E+ V +LRPG + +IE + +++ + + Sbjct: 176 P-VLDGGPAQVGIESTIVDLSRLEQGVGPVLLRPGHVTPAQIEAV-----LDMPVAMPDA 229 Query: 218 STPQSPGMLKSHYAPRSQVRL------------RAIHVNPREALIRFGNVPIKNIENAII 265 + P++ G LK+HYAP + + L R + R A++ FG P + Sbjct: 230 AAPRASGTLKAHYAPHTPLELMTTQHLMDAARGRGLPAG-RVAIVAFGAAPAELDARVAW 288 Query: 266 SLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 G+ +A L+ ++ D G + I + P A+N+R+ RAAA Sbjct: 289 RQVPDDAGRYAQA---LYTMLRDLDGGGYARILVQAPPADDAWRAVNDRIGRAAA 340 >gi|146307051|ref|YP_001187516.1| translation factor SUA5 [Pseudomonas mendocina ymp] gi|145575252|gb|ABP84784.1| translation factor SUA5 [Pseudomonas mendocina ymp] Length = 339 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 84/223 (37%), Positives = 124/223 (55%), Gaps = 8/223 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L + + L +G +A+PTETVYGLA D+RN A+ +++++K+RP NPLI H++D S Sbjct: 31 LDRCVQQLRSGNLLAMPTETVYGLAADARNGEAVAKVFQLKQRPDSNPLIVHLADASQAS 90 Query: 72 KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 AS P L WPGPLTLVL + D+ TA + RVP + L++ Sbjct: 91 NWASHIPAQAQVLMDACWPGPLTLVLP--ARDDVLRSVTAGQDSVALRVPAHPVARALLQ 148 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 +G L PSANR IS T+ H+ E+ LI+DGG ++GLES+IV++ Sbjct: 149 AFGDGLVAPSANRYMSISPTSAAHVARQFAESEL-LILDGGACQVGLESSIVSLLPGDSP 207 Query: 190 RILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAP 232 R+LR G L L++ + LE + + ++PG + HYAP Sbjct: 208 RLLRHGMLGQARLEQVLGQALE---NRPGSVRAPGQCRRHYAP 247 >gi|71421441|ref|XP_811801.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70876508|gb|EAN89950.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 384 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 116/371 (31%), Positives = 178/371 (47%), Gaps = 59/371 (15%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I ++ L KA + L G +AIPTETVYGL ++ N A+ +++ +K RP +PLICHVS Sbjct: 4 IISASELEKAADALARGNLVAIPTETVYGLGGNALNKEAVEKIFIVKGRPLTDPLICHVS 63 Query: 66 DI--SMVKKHASVDPLSLHLAKLF----WPGPLTLVLDLLSTTDIHPLS-TANLKTACFR 118 D+ +M DP ++ LA++ WPGPLT+V L + P S T R Sbjct: 64 DVEKAMDLWDVHADPEAVELARVLGTAIWPGPLTIV---LRANPLLPNSVTGGSGFVGAR 120 Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP-LIIDGGISKIGL 176 +P T +L++ P+A PSAN G +S T H+L K+ LI+DGG IG+ Sbjct: 121 IPRHEITLRLLQLVNFPVAAPSANTFGHVSPTTADHVLKDLGPKDSSLLIVDGGPCDIGI 180 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETST------PQ----SPGML 226 EST+V V + V ILR GG+ + + RA+ + + T P+ PG L Sbjct: 181 ESTVVKVNNVESVEILRRGGVTLTEVLRALGDKFHPLITIRDTRLRHLSPEMAMDGPGQL 240 Query: 227 KSHYAPRSQVRLRA-------IHVNPREALIRFGN-----VPIKNI--ENAIISL----- 267 +HY+P RL + ++P AL+ F + P + + II Sbjct: 241 LTHYSPNVPSRLLTPSSFTTNLPMDPEGALVEFSSNSSVAAPTEVLLRHTVIIDFGGKLQ 300 Query: 268 ----------NLSKTGKLKEAAFNLFNYMKIADD-SGASSIAF---SSIP----NHGLGI 309 +LS +++EA F +F+ ++ + GA + F S P + L Sbjct: 301 CLKPGCLAYRDLSVNAQVREACFAVFDALRWTETIPGAEVVLFPLVSGWPHASVDTDLLA 360 Query: 310 AINNRLERAAA 320 A+ +RL RAA+ Sbjct: 361 AVEDRLFRAAS 371 >gi|297170862|gb|ADI21881.1| putative translation factor (SUA5) [uncultured verrucomicrobium HF0130_25O04] Length = 325 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 106/316 (33%), Positives = 163/316 (51%), Gaps = 22/316 (6%) Query: 21 AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80 G +A+PTETVYGLA + + A+++++E+K+RP NPLI HV D ++ A V+ + Sbjct: 15 GGEVVALPTETVYGLACLALDEKAVKKVFELKERPPTNPLIVHVLDSRQAEQIAHVNSFA 74 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKKLIETYGHPLAIP 138 L + FWPGPLTL+ L + P S TA L T R P +K+++ P+A P Sbjct: 75 KLLCQKFWPGPLTLI---LPKRQMIPDSVTAGLDTVAVRSPSHPLFRKILQEAEQPIAAP 131 Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLE 198 SAN +S T + + S + P I+DGG IGLEST++++ + ILRPG + Sbjct: 132 SANLFSMVSSTTPQEVF-DSFGEACPPILDGGKCNIGLESTVLDLTSDTP-SILRPGPIS 189 Query: 199 IETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLR----AIHVNPREALIR 251 E L+ + E+ + D +SPG+ HY+ + +RL AI R Sbjct: 190 KEELEEFLGFEISNPKKNTDSRVARKSPGLSAKHYSTETPIRLHENISAIQQIERWTADD 249 Query: 252 FGNVPIKNI------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPN- 304 +P K++ E A I + S TG ++ A NL+ +K AD I + + Sbjct: 250 LIILPCKDLIVGFDSEPATI-ITFSATGNTQDIAHNLYATLKEADQLEKKLIHLALLEET 308 Query: 305 HGLGIAINNRLERAAA 320 GL A+N+RL RA++ Sbjct: 309 DGLARAVNDRLTRASS 324 >gi|13542129|ref|NP_111817.1| translation factor (SUA5-related) [Thermoplasma volcanium GSS1] gi|14325560|dbj|BAB60463.1| hypothetical protein [Thermoplasma volcanium GSS1] Length = 361 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 105/322 (32%), Positives = 163/322 (50%), Gaps = 17/322 (5%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + L A E L G + PTETVYGL ++ N A ++++ K RP+ NPLI H+SD+ Sbjct: 15 DDLYYAVEALKHGGTVVFPTETVYGLGANAMNDEACKKIFIAKGRPSDNPLIVHISDMDQ 74 Query: 70 VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 ++ + +V + K WPGPLT+V++ I TA L T R+P + L Sbjct: 75 LENFSKNVKEEYKAILKELWPGPLTVVVE--KANGIPDTVTAKLPTVAIRMPDDSIARNL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I+ G P+A PSAN S + SIT+ K + + + +IID G K G+ESTI+++ + Sbjct: 133 IDMAG-PIAAPSANISTKPSITDSKDAI-RFLDGRVDVIIDAGKVKFGIESTIIDL-TQD 189 Query: 188 KVRILRPGGLEIETLK---RAISVE-LEYCVDETSTPQSPGMLKSHYAPRSQVRL---RA 240 VR+LRPG +E L+ I+V+ + E +PGM HY+P ++ L R Sbjct: 190 PVRLLRPGAFSVEDLEPLFGKITVDKVALGKAEAKVAITPGMKYRHYSPNKKIFLCKDRE 249 Query: 241 IHVNPREALIRFGNVPIKNIENAIISLN---LSKTGKLKEAAFNLFNYMKIADDSGASSI 297 + + +E L G + + IS N + + L A NLF+ DDS + Sbjct: 250 VVESLKEELPNNGVLMCTEEVSQGISTNKIIVGRDSDLYSVAHNLFSSFIELDDSSYNYG 309 Query: 298 AFSSIPNHGLGIAINNRLERAA 319 G+G+AI NR+ +A+ Sbjct: 310 VIIPFEEKGIGLAIMNRIRKAS 331 >gi|322824288|gb|EFZ29735.1| hypothetical protein TCSYLVIO_3990 [Trypanosoma cruzi] Length = 384 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 115/371 (30%), Positives = 178/371 (47%), Gaps = 59/371 (15%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I ++ L +A + L G +AIPTETVYGL ++ N A+ +++ +K RP +PLICHVS Sbjct: 4 IISASELERAADALARGNLVAIPTETVYGLGGNALNKEAVEKIFTVKGRPLTDPLICHVS 63 Query: 66 DI--SMVKKHASVDPLSLHLAKLF----WPGPLTLVLDLLSTTDIHPLS-TANLKTACFR 118 D+ +M DP ++ LA++ WPGPLT+V L + P S T R Sbjct: 64 DVEKAMDLWDVHADPEAVELARVLGTAIWPGPLTIV---LRANPLLPNSVTGGSGFVGAR 120 Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP-LIIDGGISKIGL 176 +P T +L++ P+A PSAN G +S T H+L K+ LI+DGG IG+ Sbjct: 121 IPRHEITLRLLQLVNFPVAAPSANTFGHVSPTTADHVLKDLGPKDSSLLIVDGGPCDIGI 180 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETST------PQ----SPGML 226 EST+V V + V ILR GG+ + + RA+ + + T P+ PG L Sbjct: 181 ESTVVKVNNVESVEILRRGGVTLTEVLRALGDKFHPLITIRDTRLRHLSPEMAMDGPGQL 240 Query: 227 KSHYAPRSQVRLRA-------IHVNPREALIRFGN-----VPIKNI--ENAIISL----- 267 +HY+P RL + ++P AL+ F + P + + II Sbjct: 241 LTHYSPSVPSRLLTPSSFTTNLPMDPEGALVEFSSNSSVAAPTEVLLRHTVIIDFGGKLQ 300 Query: 268 ----------NLSKTGKLKEAAFNLFNYMKIADD-SGASSIAF---SSIP----NHGLGI 309 +LS +++EA F +F+ ++ + GA + F S P + L Sbjct: 301 CLKPGCLAYRDLSVNAQVREACFAVFDALRWTETIPGAEVVLFPLVSGWPHASVDTDLLA 360 Query: 310 AINNRLERAAA 320 A+ +RL RAA+ Sbjct: 361 AVEDRLFRAAS 371 >gi|218883353|ref|YP_002427735.1| Putative translation factor [Desulfurococcus kamchatkensis 1221n] gi|218764969|gb|ACL10368.1| Putative translation factor [Desulfurococcus kamchatkensis 1221n] Length = 359 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 101/333 (30%), Positives = 161/333 (48%), Gaps = 35/333 (10%) Query: 18 FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77 L+ G+ +A PTETVYGL A+ ++++ K RP NPLI H+S + M+++ A Sbjct: 27 LLNKGI-VAFPTETVYGLGAVIYYEDAVEKIFKAKMRPPDNPLIIHISTLDMLEEVALNI 85 Query: 78 PLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-KLIETYGHPL 135 P + L FWPGPLTL+L + + T L T R+P T +LI G+P+ Sbjct: 86 PEDAYSLINRFWPGPLTLILP--RNPRVPKIVTGGLDTIAVRMPGHPTALELINVVGYPI 143 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 A PSAN SG+ S +H++ + I IID G + G+EST+VN+ E +LRPG Sbjct: 144 AAPSANLSGRPSPVTAEHVI-RDLMGRIDAIIDAGETFFGVESTVVNI-LEDPPTLLRPG 201 Query: 196 GLEIE----TLKRAISV-ELEYCVDETSTPQSPGMLKSHYAPRSQVRL------------ 238 +E L R I++ + + + +PGM HY+P +++ L Sbjct: 202 AYPVEEIEKVLGRKIAIPDFARGLKYSEVALAPGMKYRHYSPEAKLILVESVTNDYSVIA 261 Query: 239 -------RAIHVNPREALIRFGNVP----IKNIENAIISLNLSKTGKLKEAAFNLFNYMK 287 R I V+ + ++ + +E L + L E A NLF ++ Sbjct: 262 NKIIEAARDISVSTNSDICIVSSIETSSYYRKLEKVKAVLIIGSRRNLYEVAKNLFKILR 321 Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 D+ G ++ P G+G+A+ NRL +A++ Sbjct: 322 DVDNIGCKTVFVEGFPETGIGLAVMNRLRKASS 354 >gi|331251224|ref|XP_003338212.1| SUA5 protein [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309317202|gb|EFP93793.1| SUA5 protein [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 444 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 87/241 (36%), Positives = 134/241 (55%), Gaps = 32/241 (13%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD---PLSL 81 +A PTETVYGL + + TA+ ++++ K RP+ NPLI HVS ++++K D P + Sbjct: 68 VAFPTETVYGLGASALSSTAVSKIFKAKGRPSDNPLIVHVSSLNLLKTFVPPDWNFPATY 127 Query: 82 H-LAKLFWPGPLTLVLDLLSTTDIHP------LSTANLKTACFRVPC-GFTKKLIETYGH 133 L + FWPGPLTL++ +T+ + P L T L T R+P ++ LI G Sbjct: 128 QALIERFWPGPLTLLVP--TTSPVQPNCPISNLVTCGLPTVAVRMPAHSISRALIAESGV 185 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN-VQCEKKVRIL 192 P+A PSAN SG+ S T +H+ + +IP+IIDGG ++G+EST+V+ + + +VRIL Sbjct: 186 PIAAPSANLSGRPSPTTAQHV-ERDMKTKIPMIIDGGACQVGVESTVVDGLNPDGRVRIL 244 Query: 193 RPGGLEIETLKRAI----------------SVELEYCVDE-TSTPQSPGMLKSHYAPRSQ 235 R GGL +E ++ + +Y E + P +PGM HYAP ++ Sbjct: 245 RLGGLSVEDIEACLIEAGLNLSDGKPILAGVYNQDYRDKELEAKPTTPGMKYKHYAPHAK 304 Query: 236 V 236 V Sbjct: 305 V 305 >gi|254582671|ref|XP_002499067.1| ZYRO0E02882p [Zygosaccharomyces rouxii] gi|238942641|emb|CAR30812.1| ZYRO0E02882p [Zygosaccharomyces rouxii] Length = 414 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 123/369 (33%), Positives = 179/369 (48%), Gaps = 58/369 (15%) Query: 6 ITDSNALRKACEFLDAGL-PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 I++ N L +A + + L P+A PTETVYGL S + A++ +Y K RP+ NPLI HV Sbjct: 44 ISEKNLL-EAAKIIRGNLEPVAFPTETVYGLGGSSLSDEAVKSIYRAKNRPSDNPLITHV 102 Query: 65 SDISMV------KKHASVD---PLSLH-LAKLFWPGPLTLVLDL-LSTTDIHPLSTANLK 113 S I + +KH+S+ P S H L WPGPLT++L + L T+ + L+TA+ Sbjct: 103 SSIDQLNRKIYQEKHSSLFQNIPNSYHPLISKLWPGPLTILLPVPLKTSALSKLTTADQP 162 Query: 114 TACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172 T R+P + LI P+A PSAN S + S T H+ + IPLI+DGG Sbjct: 163 TFAVRIPSNPIARALIALSDTPIAAPSANASTRPSPTMASHVY-HDLKGRIPLILDGGPC 221 Query: 173 KIGLESTIVNVQCEKKVRILRPGGLEIETL-------KRAISVELEYCVDETSTPQSPGM 225 K+G+EST+V+ K +LRPGG E + + VE V E ++PGM Sbjct: 222 KVGVESTVVD-GLSKPPLLLRPGGFTYEQIVELGGQDWKDCRVERRKVVAEGEQVRTPGM 280 Query: 226 LKSHYAPRSQVRL-----RAIHVNPREALIRFGNVPIKNIENA--------IISLNLSKT 272 HYAP ++V L + + E L R + ++N E+A + SL+L T Sbjct: 281 KYKHYAPSAKVILLVPKPQRTDSDRIEELKRLISQELQN-EDANTIKKLAILTSLHLGAT 339 Query: 273 ---------GKLK-----------EAAFNLFNYMKIADDSGASSIAF-SSIPNHGLGIAI 311 K+K E NLF ++ D+ ++ F I G+AI Sbjct: 340 EIQDLTVGDSKIKPIVVKLGNTGEEIQANLFAALRQVDEIDNVNLIFVEGISEDREGLAI 399 Query: 312 NNRLERAAA 320 NRL +AA Sbjct: 400 MNRLRKAAG 408 >gi|225551793|ref|ZP_03772736.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia sp. SV1] gi|225371588|gb|EEH01015.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia sp. SV1] Length = 337 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 108/339 (31%), Positives = 168/339 (49%), Gaps = 34/339 (10%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I S+ ++KA + + G + PTETVYG+ ++ N A++ ++ +KKRP NPLI HV Sbjct: 6 IISSSQIQKAAKLIKMGELVVFPTETVYGIGANAYNEDAVKMIFLVKKRPINNPLIVHVD 65 Query: 66 DISMVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 + +K+ + P S L L K F PGPLT VL + I + NL T R+P T Sbjct: 66 TVKKIKELSEYIPKSALMLIKKFSPGPLTYVLK--KSIKISRFVSGNLDTVAIRIPANKT 123 Query: 125 K-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS-------KIGL 176 LI+ PL PSAN S + S TN + L KE+ ++ G I IG+ Sbjct: 124 ALSLIKASKVPLVAPSANISKRPSSTNFEMAL-----KELNGLVRGIIKPEENKDFNIGI 178 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELE--YCVDETST----PQSPGMLKSHY 230 EST+V + V ILRPG + K+ I EL+ Y V+ T +SPG + HY Sbjct: 179 ESTVVGFDLKDNVLILRPGAI----TKKMIENELQGKYTVNYAETKIELEKSPGNIIEHY 234 Query: 231 APRSQVRLRAIHVNPREALIRFGNVPIKN--IENAIISL-----NLSKTGKLKEAAFNLF 283 P+ V L N R L + + I +++ + + N++ L+E A NL+ Sbjct: 235 KPKIPVYLFKSQDNIRRYLNKDTKILITKATLKSYLFNFFWDKKNITVFNTLEEYAQNLY 294 Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 + + ++ I + + LG +INNR+++A++ R Sbjct: 295 KEL-VNSENNYKQILSEFLKDEELGHSINNRIKKASSNR 332 >gi|305662754|ref|YP_003859042.1| translation factor SUA5 [Ignisphaera aggregans DSM 17230] gi|304377323|gb|ADM27162.1| translation factor SUA5 [Ignisphaera aggregans DSM 17230] Length = 359 Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 108/343 (31%), Positives = 168/343 (48%), Gaps = 33/343 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + + + C+ + G I PTETVYGL N A+R+++ K RP NPLI H+S I Sbjct: 15 DEDIIDRCCKAILNGAIIVFPTETVYGLGAYVYNVEAVRKIFIAKSRPMDNPLIVHISKI 74 Query: 68 SMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + + A P ++ +A+ FWPGPLT++L + + L T R+P Sbjct: 75 DQLYEIAIDVPEIVNIIAENFWPGPLTILLR--KNRSVPKEVSGGLDTVAVRMPAHPVAL 132 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 KLI+ G P+A PSAN SG+ S T+ H+L + +I+D G + G+ESTI+++ Sbjct: 133 KLIDCSG-PIAAPSANISGRPSPTSPYHVLVDMFGRA-DIILDAGETFFGVESTIIDILS 190 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCV-----DETSTPQSPGMLKSHYAPR------- 233 + ++LRPG + IE ++ ++ +E V E+ +PGM HYAP+ Sbjct: 191 DPP-KLLRPGAMPIEKIEEVLNKRIEIPVFALGYKESEKALAPGMKYKHYAPKTPLIIAK 249 Query: 234 ----SQVRLRAIHVN--PREALIRFGNVP-IKNIENAIISLNLS-------KTGKLKEAA 279 + R A V + + R N+ + + E A I ++L+ L E A Sbjct: 250 SRDYTDCRRYAEKVKKIAMDLIARGRNIAVVASTETADIYIDLNIKIFVLGSRKNLFEIA 309 Query: 280 FNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 NLF ++ D SG P G+GI I NRL +A+ R Sbjct: 310 KNLFGVLRELDRSGVDMAIVEGYPEKGIGITIMNRLIKASGYR 352 >gi|189347477|ref|YP_001944006.1| Sua5/YciO/YrdC/YwlC family protein [Chlorobium limicola DSM 245] gi|189341624|gb|ACD91027.1| Sua5/YciO/YrdC/YwlC family protein [Chlorobium limicola DSM 245] Length = 319 Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 111/331 (33%), Positives = 163/331 (49%), Gaps = 21/331 (6%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 MQ + +TDS +A L+ G +A PTETVYGL + AI R++ K RP NPL Sbjct: 1 MQTV-VTDSP--EEAARCLNEGGVVAFPTETVYGLGAAICHTEAIERIFAAKGRPGDNPL 57 Query: 61 ICHVS---DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 I H++ D+ V H S D L L F+PGPLTLVL + + TA L T Sbjct: 58 IVHIADPGDLMKVASHVSSDAKKLVLH--FFPGPLTLVLK--KNSSVPDSVTAGLDTVGV 113 Query: 118 RVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R P ++ P+A PSAN SG+ S T+ +L + +I I+ G S IGL Sbjct: 114 RCPSNSDATAFLKRCRCPVAAPSANVSGRPSSTSWDAVL-HDLDGKIDCILKGAPSDIGL 172 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAI-SVELEYCVDETSTPQSPGMLKSHYAPRSQ 235 ESTIV+ E + +LR G + IE L+ + S+ + + P+SPG+ HYAP ++ Sbjct: 173 ESTIVDCSGETPL-LLRTGAVTIENLREVVPSIRTADSLRQHEIPKSPGLKYPHYAPEAR 231 Query: 236 VRL----RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291 + L I + + + + + E + + ++E A LF++ ++ D Sbjct: 232 IVLLGAGERIDADSEQRTSAYIGLSLPAAEQFAL---VKHCCNIEEYARVLFDFFRLCDS 288 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 S I P GLG A+ +RL RAAA R Sbjct: 289 RKISFIYCELPPAEGLGRAVGDRLSRAAAGR 319 >gi|111115564|ref|YP_710182.1| hypothetical protein BAPKO_0778 [Borrelia afzelii PKo] gi|216263452|ref|ZP_03435447.1| putative Sua5/YciO/YrdC/YwlC family protein [Borrelia afzelii ACA-1] gi|110890838|gb|ABH02006.1| hypothetical protein BAPKO_0778 [Borrelia afzelii PKo] gi|215980296|gb|EEC21117.1| putative Sua5/YciO/YrdC/YwlC family protein [Borrelia afzelii ACA-1] Length = 334 Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 106/344 (30%), Positives = 166/344 (48%), Gaps = 34/344 (9%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M + I SN ++KA + + G + PTETVYG+ ++ N A++ ++ +KKRP NPL Sbjct: 1 MILTEIIHSNQIQKAAKLIKMGELVVFPTETVYGIGANAYNEDAVKMIFLVKKRPIENPL 60 Query: 61 ICHVSDISMVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I HV + +K+ + P S L L K F PGPLT V + I + NL T R+ Sbjct: 61 IVHVDTVKKIKELSEYIPKSALMLIKRFSPGPLTYVFK--KSIKISRFVSGNLDTVAIRI 118 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS------ 172 P LI+T P+ PSAN S + S T+ + L KE+ ++ G I Sbjct: 119 PANKIALNLIKTSKVPIVAPSANISKRPSSTSFEMAL-----KELNGLVKGIIKTEKTKD 173 Query: 173 -KIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELE--YCVDETST----PQSPGM 225 IG+EST++ + V ILRPG + K+ I EL+ Y V+ T +SPG Sbjct: 174 FNIGIESTVIGFDLKDNVLILRPGAIT----KKMIEKELQGKYTVNYAETKIELEKSPGN 229 Query: 226 LKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKN--IENAIISL-----NLSKTGKLKEA 278 + HY P+ V L N R L + + I +++ + + N+ L+E Sbjct: 230 IIEHYKPKIPVYLFKSQDNIRRYLNKDTKILITKPTLKSYLFNFLWDKKNIKVFNTLEEY 289 Query: 279 AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 A NL+ + + + I + + LG +INNR+ +A++ R Sbjct: 290 AQNLYKEL-VNSEKDYKQILSEFVKDEELGYSINNRIRKASSNR 332 >gi|71416654|ref|XP_810332.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70874846|gb|EAN88481.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 384 Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 116/371 (31%), Positives = 177/371 (47%), Gaps = 59/371 (15%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I ++ L KA L G +AIPTETVYGL ++ N A+ +++ +K RP +PLICHVS Sbjct: 4 IISASELEKAAGALARGNLVAIPTETVYGLGGNALNKEAVEKIFTVKGRPLTDPLICHVS 63 Query: 66 DI--SMVKKHASVDPLSLHLAKLF----WPGPLTLVLDLLSTTDIHPLS-TANLKTACFR 118 D+ +M DP ++ LA++ WPGPLT+V L + P S T R Sbjct: 64 DVEKAMDLWDVHADPEAVELARVLGTAIWPGPLTIV---LRANPLLPNSVTGGSGFVGAR 120 Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP-LIIDGGISKIGL 176 +P T +L++ P+A PSAN G +S T H+L K+ LI+DGG IG+ Sbjct: 121 IPRHEITLRLLQLVNFPVAAPSANTFGHVSPTTADHVLKDLGPKDSSLLIVDGGPCDIGI 180 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETST------PQ----SPGML 226 EST+V V + V ILR GG+ + ++RA+ + + T P+ PG L Sbjct: 181 ESTVVKVNNVESVEILRRGGVTLTEVQRALGDKFHPLITIRDTRLRHLSPEMAMDGPGQL 240 Query: 227 KSHYAPRSQVRLRA-------IHVNPREALIRFGN-----VPIKNI--ENAIISL----- 267 HY+P RL + ++P AL+ F + P + + II Sbjct: 241 LMHYSPSVPSRLLTPSSFTTNLPMDPEGALVEFSSNSSVAAPTEVLLRHTVIIDFGGKLH 300 Query: 268 ----------NLSKTGKLKEAAFNLFNYMKIADD-SGASSIAF---SSIP----NHGLGI 309 +LS +++EA F +F+ ++ + GA + F S P + L Sbjct: 301 CLKSGCLAYRDLSVNAQVREACFAVFDALRWTETIPGAEVVLFPLVSEWPHASVDTDLLA 360 Query: 310 AINNRLERAAA 320 A+ +RL RAA+ Sbjct: 361 AVEDRLFRAAS 371 >gi|188587452|ref|YP_001918997.1| Sua5/YciO/YrdC/YwlC family protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179352139|gb|ACB86409.1| Sua5/YciO/YrdC/YwlC family protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 367 Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 101/364 (27%), Positives = 168/364 (46%), Gaps = 66/364 (18%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D +++A + +A PTETVYGL + +P AI+++++ K RP NP+I H+ + Sbjct: 13 DKTIIKQAAGIVRQNGLVAFPTETVYGLGGNGLSPAAIQKIFQAKNRPLDNPVILHLHSV 72 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVP-CGFTK 125 + V+ LA+ FWPGPLT++ + +I P ++ L T R+P Sbjct: 73 NQVETLGFPPEEFFFLAEKFWPGPLTMI---IPKKNIVPREASGGLDTVAVRMPDHNVAL 129 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LI+ P+A PSAN SG+ S T H+ + I +IIDGG + +GLEST++++ Sbjct: 130 ALIQEAQVPMAAPSANLSGRPSPTTAAHV-ELDLSGRIDMIIDGGTTGVGLESTVIDL-S 187 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVD--------------------------ETST 219 EK ++LRPGG+ E L A L+YC D + ++ Sbjct: 188 EKPYQVLRPGGITAEQLASA----LDYCQDTFLYTGSEEDYYAEGNQSSCDEMITKDKNS 243 Query: 220 PQSPGMLKSHYAPRSQVRL------RAIHVNPREALIRFGNVPIK--------------- 258 +SPG+ HY+P+ ++ L + +H + + N K Sbjct: 244 IKSPGVKYRHYSPQGELYLVEGSGHKLLH-----KMYEYANDFSKQGYRIGILLTNELLE 298 Query: 259 ---NIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRL 315 N+ L +L E A +L++ ++ D G I + G+G+A+ NRL Sbjct: 299 EDGNLHKFCYVRRLGNEDQLTEVAHSLYDALREMDQQGIEIILCRTFSPKGIGVALMNRL 358 Query: 316 ERAA 319 +A+ Sbjct: 359 LKAS 362 >gi|297620333|ref|YP_003708470.1| Sua5/YciO/YrdC/YwlC family protein [Waddlia chondrophila WSU 86-1044] gi|297375634|gb|ADI37464.1| Sua5/YciO/YrdC/YwlC family protein [Waddlia chondrophila WSU 86-1044] Length = 307 Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 101/315 (32%), Positives = 161/315 (51%), Gaps = 24/315 (7%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 R+A L +G +A+PTETVYGLA + P AI++++ +K RP+ NPLI HV I + Sbjct: 6 RQAIRMLLSGEVVALPTETVYGLAASLKFPEAIKKIFSLKGRPSDNPLIVHVGKIEQLSS 65 Query: 73 HASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLST-ANLKTACFRVPC-GFTKKLIE 129 + + P LA+ FWPG LTL++D + ++ P + A L T R+P T++++E Sbjct: 66 YVTTFPPGFESLAEAFWPGALTLIID--ANKEMVPEAVRAGLSTVAVRIPSHAKTRQVLE 123 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G L +PSAN SG+ S T +H++ ++ ++DGG + G+ESTI+ + + V Sbjct: 124 ETG-ALVMPSANLSGRPSATTAQHVIDD--FQDAAPVLDGGKCQQGVESTIMIFRDTRWV 180 Query: 190 RILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREAL 249 I R G + E + + ++ + T+ P PG HYAP + L+ + + + Sbjct: 181 -IAREGAVTAEEIALVLGYAPDFS-ERTAKPICPGQHYKHYAPNAV--LKPLGKDQTGVV 236 Query: 250 IRFGNVPIKNIENAIISLNLSKTGKLKE---AAFNLFNYMKIADDSGASSIAF--SSIPN 304 I F + + S L G L E A NL++ ++ D G AF PN Sbjct: 237 IGFSDRKYPH------STALYILGDLSEPEIVAGNLYSVLRALDTDGVQE-AFIDWDFPN 289 Query: 305 HGLGIAINNRLERAA 319 GL I RL +A+ Sbjct: 290 EGLWRTIRERLRKAS 304 >gi|21674532|ref|NP_662597.1| SUA5/YciO/YrdC family protein [Chlorobium tepidum TLS] gi|21647726|gb|AAM72939.1| SUA5/yciO/yrdC family protein [Chlorobium tepidum TLS] Length = 323 Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 101/323 (31%), Positives = 157/323 (48%), Gaps = 12/323 (3%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 MQ + +TD +A +L+ +A PTETVYGL D+ NP A+ ++++ K RP+ NPL Sbjct: 1 MQTL-VTDRP--EEAASWLNRSETVAFPTETVYGLGADAFNPDAVAKIFKAKGRPSDNPL 57 Query: 61 ICHVSDISMVKK-HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I HV+ + + A + + L + F+PGPLTLVL + + + +A L T R Sbjct: 58 IVHVATPEQIGEVAAEIGETAKILVERFFPGPLTLVLKKRAA--VPEIVSAGLPTIGVRC 115 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P + + HP+A PSAN SG+ S T+ K + + +I ++ G S IGLES Sbjct: 116 PSHPIASEFLRHCKHPVAAPSANVSGRPSPTDWKTVY-HDLGGKIACLLRGEPSTIGLES 174 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAI-SVELEYCVDETSTPQSPGMLKSHYAPRSQVR 237 TIV+ R+LR G + IE L+ + +E+ P+SPG HY+P +++ Sbjct: 175 TIVDCSVNPP-RLLRTGAVSIELLRELVPDIEIATACKPGEAPKSPGQKYRHYSPEAEII 233 Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297 L + P I + + + E A LF + + D G +I Sbjct: 234 L--VESPPSNLQTDLHAAWIGLAAPPAGAAKSLQCRDMDEYARVLFGFFRTCDAEGIRTI 291 Query: 298 AFSSIPNHGLGIAINNRLERAAA 320 P G+G AI +RL +AA Sbjct: 292 YCELPPEKGIGRAIRDRLVKAAG 314 >gi|165760855|pdb|2EQA|A Chain A, Crystal Structure Of The Hypothetical Sua5 Protein From Sulfolobus Tokodaii Length = 352 Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 104/326 (31%), Positives = 154/326 (47%), Gaps = 19/326 (5%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + ++ A + + G +A PTETVYGL ++ + A ++++ K RP NPLI H++D + Sbjct: 15 DKIKIAADVIRNGGTVAFPTETVYGLGANAFDGNACLKIFQAKNRPVDNPLIVHIADFNQ 74 Query: 70 VKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + A P L +A++ WPGPLT VL T + TA L T R P +L Sbjct: 75 LFEVAKDIPDKVLEIAQIVWPGPLTFVLK--KTERVPKEVTAGLDTVAVRXPAHPIALQL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I G P+A PSAN + + S T + ++ + + +IIDGG + G+ESTI+NV E Sbjct: 133 IRESGVPIAAPSANLATRPSPTKAEDVI-VDLNGRVDVIIDGGHTFFGVESTIINVTVEP 191 Query: 188 KVRILRPGGLEIETLKRAISV----ELEYCVDETSTPQSPGMLKSHYAPRSQVRL---RA 240 V +LRPG IE LK+ E E +PG HYAP +++ L R Sbjct: 192 PV-LLRPGPFTIEELKKLFGEIVIPEFAQGKKEAEIALAPGXKYKHYAPNTRLLLVENRN 250 Query: 241 IHVNPREALIRFGNVPI---KNIENAIISLN---LSKTGKLKEAAFNLFNYMKIADDSGA 294 I + L + V + K + L L L E A NLF+ + D Sbjct: 251 IFKDVVSLLSKKYKVALLIPKELSKEFEGLQQIILGSDENLYEVARNLFDSFRELDKLNV 310 Query: 295 SSIAFSSIPNHGLGIAINNRLERAAA 320 P G+G AI NR +A+ Sbjct: 311 DLGIXIGFPERGIGFAIXNRARKASG 336 >gi|302348551|ref|YP_003816189.1| Putative translation factor (SUA5) [Acidilobus saccharovorans 345-15] gi|302328963|gb|ADL19158.1| Putative translation factor (SUA5) [Acidilobus saccharovorans 345-15] Length = 361 Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 101/324 (31%), Positives = 156/324 (48%), Gaps = 32/324 (9%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLSLHL 83 +A PTETVYGL D+ NP A+++++ K+RP NPLI H+ ++ + + A + P + L Sbjct: 36 VAFPTETVYGLGADTYNPEAVKKVFIAKRRPMDNPLIVHIHSLNQLYEVAVKIPPEAEKL 95 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142 A+ FWPGP+TL+ L + + P TA T R+P I G P+A PSAN Sbjct: 96 ARRFWPGPMTLL--LWKSDKVPPEVTAGRPTVAVRMPAHPVALAFIRESGVPIAAPSANL 153 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202 +G+ S T +H++ + +IID G + G+ESTIV++ + V +LRPGGL +E + Sbjct: 154 AGRPSPTTGEHVV-RDLYGRADVIIDSGETVYGVESTIVDMTRDPPV-LLRPGGLPVEEI 211 Query: 203 KRAISVE-----LEYCVDETSTPQSPGMLKSHYAPRSQV--------RLRAIHVNPREAL 249 +R + E + + +PGM HYAP ++ L+A E + Sbjct: 212 ERELGKEVVIPQFARGLGQADVALAPGMKYRHYAPFKRLTIVEGDYSDLKAYAAKVAEVV 271 Query: 250 ---IRFGNVPI---------KNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297 I G PI + + L L + A NLF + D+ Sbjct: 272 KQEIAKGARPIILCSSETAQYYEQQGLRHLVLGPRSNIFIVARNLFKTFRAIDEMLDVDE 331 Query: 298 AF-SSIPNHGLGIAINNRLERAAA 320 AF GLG+A+ NR +A+ Sbjct: 332 AFMEGFEERGLGLAVMNRARKASG 355 >gi|300706558|ref|XP_002995535.1| hypothetical protein NCER_101537 [Nosema ceranae BRL01] gi|239604680|gb|EEQ81864.1| hypothetical protein NCER_101537 [Nosema ceranae BRL01] Length = 327 Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 103/306 (33%), Positives = 159/306 (51%), Gaps = 17/306 (5%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK--HASVDPLSLH 82 + IPTETVYGLA N A++ ++ +KKRP NPLI HVS + M++ V Sbjct: 23 VVIPTETVYGLAASINNEQALKNIFRLKKRPIDNPLIVHVSSLDMLRTIIEGEVPENYQK 82 Query: 83 LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSAN 141 + ++FWPGP++L+ + ++ TA L T R+P +IE PLA PSAN Sbjct: 83 IIEIFWPGPISLLFR--ANKNLSKNVTAGLNTVLVRMPDNKVVLDIIEKLNVPLAAPSAN 140 Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIET 201 SG+ S T V+H + PL +DGG K+GLEST+ + E ILRPGG++I Sbjct: 141 VSGKPSPTCVQHAI-DDFGDNCPLYLDGGECKVGLESTVFSYINEP--IILRPGGVKICE 197 Query: 202 LKRAI--SVELEY-CVDETSTPQSPGMLKSHYAPRSQ-VRLRAIHVNPREALIRFGNVPI 257 L+ I + + Y +T PG HY+P ++ + + +N +E + + NV I Sbjct: 198 LENIICKKINVNYLSFTGKNTTICPGQKYKHYSPINKFIVITTDTINLKELIKNYKNVGI 257 Query: 258 ---KNIENAIISLNLSKTG-KLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINN 313 N + I ++ + + G KE A N F ++ D+ I S+P G+AI + Sbjct: 258 LSHFNFKPQIENVTIFELGNNYKEVATNFFKGLR-KLDTTCDIIITKSLPLEYEGMAIMD 316 Query: 314 RLERAA 319 R+++AA Sbjct: 317 RMKKAA 322 >gi|193212146|ref|YP_001998099.1| Sua5/YciO/YrdC/YwlC family protein [Chlorobaculum parvum NCIB 8327] gi|193085623|gb|ACF10899.1| Sua5/YciO/YrdC/YwlC family protein [Chlorobaculum parvum NCIB 8327] Length = 314 Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 104/328 (31%), Positives = 162/328 (49%), Gaps = 22/328 (6%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 MQ + +TD +A L+ G +A PTETVYGL D+ NP A+ ++ K RP+ NPL Sbjct: 1 MQTL-VTDKP--EEAASHLNRGETVAFPTETVYGLGADAFNPDAVAGIFRAKGRPSDNPL 57 Query: 61 ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I HV+ V + A ++ + L + ++PGPLT+VL + + + +A L T R Sbjct: 58 IVHVASPDRVGEVAREINEAAQRLIERYFPGPLTIVLKKRDS--VPDIVSAGLPTVGVRC 115 Query: 120 PC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P + + HP+A PSAN SG+ S T+ K + + +I ++ G S IGLES Sbjct: 116 PAHSQAAEFLRHCKHPVAAPSANVSGRPSPTDWKTVY-HDLGGKIACLLRGEPSTIGLES 174 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAI-SVELEYCVDETSTPQSPGMLKSHYAPRSQVR 237 TIV+ + + +LR G + +E L+ + +++ E P+SPG HY+P +++ Sbjct: 175 TIVDCSVKPPL-LLRSGAISLEALQEIVPDIKVATTCREGEAPKSPGQKYRHYSPEAEII 233 Query: 238 L-----RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDS 292 L ++ + A I P A SL L E A LF + + D Sbjct: 234 LVETAPSSLPTEQKAAWIGLSTPPA----GATKSLQCH---DLDEYARVLFGFFRTCDAE 286 Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAA 320 G +I P G+G AI +RL +AA Sbjct: 287 GIRTIYCELPPEEGIGRAIRDRLVKAAG 314 >gi|18313733|ref|NP_560400.1| sua5 family protein [Pyrobaculum aerophilum str. IM2] gi|18161288|gb|AAL64582.1| sua5 family protein [Pyrobaculum aerophilum str. IM2] Length = 343 Score = 132 bits (332), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 105/330 (31%), Positives = 158/330 (47%), Gaps = 23/330 (6%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D ++ A E L G +A PTETVYGL + ++++ K RP NPLI HV + Sbjct: 12 DPEVIKTAAEVLKNGGIVAAPTETVYGLFTHAYREDGCVKVFKAKGRPMDNPLIVHVDSV 71 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 M + A + + WPGP+T+V+ S + TA L T R P Sbjct: 72 EMASEIAEIPEGIRGVLAQLWPGPVTIVVK--SRGVVPRCVTAGLNTVAVRAPAHPIPLA 129 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 +I+ P+A PSAN++G+ S T HIL + E+ LIIDGG + G+ESTI++V Sbjct: 130 IIKELNAPIAGPSANKAGRPSPTTATHIL-EDLGDEVDLIIDGGPTFFGVESTIIDV-TR 187 Query: 187 KKVRILRPGGLEIETLKRAISVELEY-----CVDETSTPQSPGMLKSHYAPRSQVRLRAI 241 K +LRPG +E L++ E++ + E +PGM HYAP + L + Sbjct: 188 KPPALLRPGPFTVEELEKFFG-EIQIPPVARGLAEAEVALAPGMKYKHYAPDTM--LVIV 244 Query: 242 HVNPREALIRFGNVPIK--------NIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293 H + EA+ +K +A SL+L L E A NL+ ++ D Sbjct: 245 HFDLAEAVKVLKARGLKVAVLCAAGKCADADASLHLGT--DLYEVAKNLYKSLRDLDKLS 302 Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAAPRN 323 + ++ G+G+AI NR+ +AAA R Sbjct: 303 VNIGIIPAVEERGIGLAIMNRIRKAAAHRE 332 >gi|170755509|ref|YP_001779769.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum B1 str. Okra] gi|169120721|gb|ACA44557.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum B1 str. Okra] Length = 351 Score = 132 bits (332), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 103/344 (29%), Positives = 173/344 (50%), Gaps = 44/344 (12%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + + +A + L G + PTETVYGL ++ + A++ ++E K RP NPLI H+S I Sbjct: 14 DEHVISEAGDILRQGGLVVFPTETVYGLGANALDKNAVKGIFEAKGRPQDNPLIVHISKI 73 Query: 68 ----SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLST-ANLKTACFRVPCG 122 +VKK + P++ L FWPGP+T++ L DI P T A L + R+P Sbjct: 74 KDIDELVKK---IPPIAEKLMDKFWPGPMTII---LKKKDIIPNETSAGLDSIGIRMPSN 127 Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 +LI G P+A PSAN SG+ S T+++ + + + +I+ G S++G+EST++ Sbjct: 128 KIAMELISMAGVPIAAPSANLSGKPSPTDIETCI-EDLDGRVNMILGGDNSEVGVESTVI 186 Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVD--------ETSTPQSPGMLKSHYAPR 233 + ILRPGG+ +E +K V+ +D + P++PGM HYAP+ Sbjct: 187 DCTINPPC-ILRPGGITLEMVKE---VDSNIYIDPAIMKKPGKDLKPKAPGMKYRHYAPK 242 Query: 234 SQVRLRAIHVNPR------------EALIRFGNVPI-KNIEN----AIISLNLSKTGKLK 276 + +++ +N +A + G + + I+N ++S+ K L Sbjct: 243 APLKIIKGDLNKTIEKINEMVQNYIDAEKKVGIIATDETIDNYKKGDVVSIGSRKD--LN 300 Query: 277 EAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 A NLF ++ D+ I + +G+AI NRL+++A Sbjct: 301 TIAHNLFYVLRSFDEKNVDLILSEAFEEKDMGVAIMNRLKKSAG 344 >gi|212528906|ref|XP_002144610.1| translation initiation protein Sua5 [Penicillium marneffei ATCC 18224] gi|210074008|gb|EEA28095.1| translation initiation protein Sua5 [Penicillium marneffei ATCC 18224] Length = 426 Score = 132 bits (332), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 86/231 (37%), Positives = 125/231 (54%), Gaps = 17/231 (7%) Query: 23 LPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH 82 +P+ PTETVYGL D+ +++ +Y+ KKRP+ NPLI HV I MV + + D S Sbjct: 54 IPVGFPTETVYGLGADATRSGSVQGIYKAKKRPSDNPLIVHVDSIEMVNRLLNPDGNSTT 113 Query: 83 --------LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGH 133 L FWPG LT++L + + TANL T R+P F + LI Sbjct: 114 KIPTIYEPLISRFWPGALTILLPNPKGSLLAKEVTANLPTFGVRMPSSAFARLLIHVTDR 173 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 PLA PSAN S + S T +H+ + I LI+DGG +G+EST+V+ + ILR Sbjct: 174 PLAAPSANASTKPSPTTAQHVY-HDLQGRIDLILDGGPCGVGVESTVVDGLSDPPA-ILR 231 Query: 194 PGGLEIETLKRA---ISVELEY---CVDETSTPQSPGMLKSHYAPRSQVRL 238 PGG+ IE +K +V++ Y + P++PGM HY+P+++V L Sbjct: 232 PGGIGIEEIKTCPGWENVQVGYHDNALQSKEAPRAPGMKYKHYSPKARVVL 282 >gi|331086808|ref|ZP_08335885.1| hypothetical protein HMPREF0987_02188 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409974|gb|EGG89409.1| hypothetical protein HMPREF0987_02188 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 507 Score = 132 bits (332), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 105/337 (31%), Positives = 168/337 (49%), Gaps = 31/337 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D N + A L G +A PTETVYGL + A ++ Y K RP+ NPLI H+++ Sbjct: 14 DENVIGMAGVILKEGGLVAFPTETVYGLGAHALKEEAAKKTYAAKGRPSDNPLIVHIAEY 73 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCG-FT 124 +++ A ++ + LA FWPGPLT++ + + + P +T L T R+P Sbjct: 74 RALEEIAVNIPDKTALLANHFWPGPLTMIFE---KSALVPYGTTGGLDTVAVRMPADEVA 130 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + +I G ++ PSAN SG+ S T H+ + +I +IIDGG +IG+ESTI+++ Sbjct: 131 RAIILAGGGYVSAPSANTSGRPSPTTAMHV-KEDLDGKIDMIIDGGSVEIGVESTILDMT 189 Query: 185 CEKKVRILRPGGLEIETLKRAIS--VELEYCVDETS--TPQSPGMLKSHYAPRSQVRLRA 240 + ILRPG + E L+ I E + V + S P++PGM HYAP++ +L Sbjct: 190 VTPPM-ILRPGAITKEMLEEVIGEVTEDQAIVSDKSKEAPKAPGMKYRHYAPKA--KLMI 246 Query: 241 IHVNPREALIRFGNVPIKN----IENAIISLNLS----KTGKLKE---------AAFNLF 283 I +EA+ V + + II+ + + K G +K A NL+ Sbjct: 247 IEGETKEAVKAIRQVAFEQERLGYKVGIIATDETAEKYKRGIVKNIGTRENEYTIAQNLY 306 Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ D+ I + G+G A+ NRL++AA Sbjct: 307 RVLREFDEEDVDYIYSEAFAMDGIGSAVMNRLKKAAG 343 >gi|216264566|ref|ZP_03436558.1| putative Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi 156a] gi|221217952|ref|ZP_03589419.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi 72a] gi|225550010|ref|ZP_03770971.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi 118a] gi|215981039|gb|EEC21846.1| putative Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi 156a] gi|221192258|gb|EEE18478.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi 72a] gi|225369469|gb|EEG98921.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi 118a] Length = 337 Score = 132 bits (332), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 107/339 (31%), Positives = 168/339 (49%), Gaps = 34/339 (10%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I S+ ++KA + + G + PTETVYG+ ++ N A++ ++ +KKRP NPLI HV Sbjct: 6 IISSSQIQKAAKLIKMGELVVFPTETVYGIGANAYNEDAVKMIFLVKKRPINNPLIVHVD 65 Query: 66 DISMVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 + +K+ + P S L L K F PGPLT VL + I + NL T R+P T Sbjct: 66 TVKKIKELSEYIPKSALMLIKKFSPGPLTYVLK--KSIKISRFVSGNLDTVAIRIPANKT 123 Query: 125 K-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS-------KIGL 176 LI+ P+ PSAN S + S TN + L KE+ ++ G I IG+ Sbjct: 124 ALSLIKASKVPIVAPSANISKRPSSTNFEMAL-----KELNGLVRGIIKTEENKDFNIGI 178 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELE--YCVDETST----PQSPGMLKSHY 230 EST+V + V ILRPG + K+ I EL+ Y V+ T +SPG + HY Sbjct: 179 ESTVVGFDLKDNVLILRPGAI----TKKMIENELQGKYTVNYAETKMELEKSPGNIIEHY 234 Query: 231 APRSQVRLRAIHVNPREALIRFGNVPIKN--IENAIISL-----NLSKTGKLKEAAFNLF 283 P+ V L N R L + + I +++ + + N++ L+E A NL+ Sbjct: 235 KPKIPVYLFKSQDNIRRYLNKDTKILITKATLKSYLFNFFWDKKNITVFNTLEEYAQNLY 294 Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 + + ++ I + + LG +INNR+++A++ R Sbjct: 295 KEL-VNSENNYKQILSEFLKDEELGHSINNRIKKASSNR 332 >gi|70607376|ref|YP_256246.1| hypothetical protein Saci_1642 [Sulfolobus acidocaldarius DSM 639] gi|68568024|gb|AAY80953.1| universally conserved protein [Sulfolobus acidocaldarius DSM 639] Length = 352 Score = 132 bits (332), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 100/324 (30%), Positives = 162/324 (50%), Gaps = 19/324 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +R+A E + G ++ PTETVYGL ++ + A ++++ K RP NPLI H++++ + Sbjct: 17 IREASEVIKRGGLVSFPTETVYGLGANAYDGNACLKIFQAKNRPPDNPLIVHIAELDQLF 76 Query: 72 KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 A ++ L + ++ WPGPLTL+L ++ I +A L T R+P +LI Sbjct: 77 DVAVDINEKVLEIVQVIWPGPLTLILK--KSSKIPKEVSAGLDTVAVRMPAHPIALQLIR 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G P+A PSAN + + S T + +L + + + +IIDGG + G+ESTIVNV Sbjct: 135 ESGVPIAAPSANLATRPSPTRAEDVL-NDLNGRVDIIIDGGHTFFGVESTIVNVTSNPPT 193 Query: 190 RILRPGGLEIETLKR---AISV-ELEYCVDETSTPQSPGMLKSHYAPRSQVRL---RAIH 242 +LRPG +E L+ I V E + E +PGM HYAP ++ L R++ Sbjct: 194 -LLRPGPFTVEELRSFFPDIQVPEFARGLGEADIALAPGMKYRHYAPSKKIILIENRSLM 252 Query: 243 ---VNPREALIRFGNVPIKNIENAIISLNLSKTG---KLKEAAFNLFNYMKIADDSGASS 296 V+ A + + K + N ++ G L E A NLF ++ ++ Sbjct: 253 RKVVDLLSAKYKVTVLITKELVNEFKDKDMIVLGSDENLYEVARNLFESFRLLENRDTEL 312 Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320 P G+G+AI NR +A+ Sbjct: 313 GVMVGFPERGVGLAIMNRARKASG 336 >gi|238019082|ref|ZP_04599508.1| hypothetical protein VEIDISOL_00944 [Veillonella dispar ATCC 17748] gi|237864337|gb|EEP65627.1| hypothetical protein VEIDISOL_00944 [Veillonella dispar ATCC 17748] Length = 347 Score = 132 bits (331), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 109/343 (31%), Positives = 167/343 (48%), Gaps = 33/343 (9%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 QI++ L L G ++IPTETVYGL + +P A+ ++Y K RP+ NPLI Sbjct: 8 QIITNPSEQELDMLARALRNGELVSIPTETVYGLGANGLDPEAMDKIYAAKGRPSDNPLI 67 Query: 62 CHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRV 119 HV + +K + V + L FWPGPLT+ L +D+ P +T L R Sbjct: 68 LHVPNSESIKPLVTEVSNTAQLLMDTFWPGPLTIT---LPKSDLVPNRATGGLPRVALRC 124 Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P + L+E G P+A PSAN SG+ S T + + + I I+D G IG+ES Sbjct: 125 PDHKICRALLERAGVPVAAPSANISGRPSPTTAQDVY-HDMKGRISYILDAGPCTIGVES 183 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEY---CVDETSTPQSPGMLKSHYAPRSQ 235 T+V V + KV ILRPGG+ L+ +S +EY V+ T+ P++PGM +HYAP + Sbjct: 184 TVVEVH-DDKVIILRPGGITKAQLENVVST-VEYDTALVNATTKPKAPGMKYTHYAPDAP 241 Query: 236 VRLRAIHVNPREALIRFGNVPIKNIENAIISL------NLSKT------------GKLKE 277 + + NP F + + IE I L NL K G Sbjct: 242 --MTVVVGNPEVIASTFKELS-EGIEGPIGCLVSHETYNLIKDDMRFMCHCFGHHGDALS 298 Query: 278 AAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + + + +++ + I + ++G G+AI NR+E+A++ Sbjct: 299 LGHDFYKSLLHFNENHVTLILAEGVNDNGFGVAIMNRMEKASS 341 >gi|223889416|ref|ZP_03624002.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi 64b] gi|224532614|ref|ZP_03673236.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi WI91-23] gi|224533276|ref|ZP_03673870.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi CA-11.2a] gi|223885102|gb|EEF56206.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi 64b] gi|224512470|gb|EEF82849.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi WI91-23] gi|224513441|gb|EEF83798.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi CA-11.2a] gi|312149111|gb|ADQ29182.1| Sua5/YciO/YrdC/YwlC family protein, putative [Borrelia burgdorferi N40] Length = 337 Score = 132 bits (331), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 107/339 (31%), Positives = 168/339 (49%), Gaps = 34/339 (10%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I S+ ++KA + + G + PTETVYG+ ++ N A++ ++ +KKRP NPLI HV Sbjct: 6 IISSSQIQKAAKLIKMGELVVFPTETVYGIGANAYNEDAVKMIFLVKKRPINNPLIVHVD 65 Query: 66 DISMVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 + +K+ + P S L L K F PGPLT VL + I + NL T R+P T Sbjct: 66 TVKKIKELSEYIPKSALMLIKKFSPGPLTYVLK--KSIKISRFVSGNLDTVAIRIPANKT 123 Query: 125 K-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS-------KIGL 176 LI+ P+ PSAN S + S TN + L KE+ ++ G I IG+ Sbjct: 124 ALSLIKASKVPIVAPSANISKRPSSTNFEMAL-----KELNGLVRGIIKPEENKDFNIGI 178 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELE--YCVDETST----PQSPGMLKSHY 230 EST+V + V ILRPG + K+ I EL+ Y V+ T +SPG + HY Sbjct: 179 ESTVVGFDLKDNVLILRPGAI----TKKMIENELQGKYTVNYAETKMELEKSPGNIIEHY 234 Query: 231 APRSQVRLRAIHVNPREALIRFGNVPIKN--IENAIISL-----NLSKTGKLKEAAFNLF 283 P+ V L N R L + + I +++ + + N++ L+E A NL+ Sbjct: 235 KPKIPVYLFKSQDNIRRYLNKDTKILITKATLKSYLFNFFWDKKNITVFNTLEEYAQNLY 294 Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 + + ++ I + + LG +INNR+++A++ R Sbjct: 295 KEL-VNSENNYKQILSEFLKDEELGHSINNRIKKASSNR 332 >gi|254296311|ref|ZP_04963768.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 406e] gi|157805879|gb|EDO83049.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 406e] Length = 341 Score = 132 bits (331), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 106/338 (31%), Positives = 158/338 (46%), Gaps = 38/338 (11%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + A+ A LDAG +A PTETVYGL D++NP A+ R+Y K RPA +P+I H++ S Sbjct: 10 AEAIEDAAARLDAGELVAFPTETVYGLGADAQNPAAVARIYAAKGRPANHPVIVHLAPGS 69 Query: 69 MVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 P L FWPGPLTL+L T I + + R P + Sbjct: 70 DPGYWVEALPADAKKLIDAFWPGPLTLILK--RATHIPDAVSGGQDSVGLRCPSHPVAQA 127 Query: 127 LIETY-----GH-PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L+ + GH +A PSANR G +S T +H+ + ++DGG S +G+ESTI Sbjct: 128 LLRAFDARRGGHGGVAAPSANRFGHVSPTTAQHVRDE--FGDAVHVLDGGPSDVGIESTI 185 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISV--ELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238 +++ +LRPG + + + V L D T+ P++ G LK+HYAPR+ + L Sbjct: 186 LDL-SRGFPALLRPGHVSPRQIADVLGVAPRLPDGSDATA-PRASGTLKAHYAPRTPLAL 243 Query: 239 RAIH-VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAF---------------NL 282 A + P A R P+ + A S+ G AA L Sbjct: 244 AAFERLEPLLAAARDTGEPVALVARA------SRAGAWAHAAGVHFVAAPEDPAAYAREL 297 Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + ++ D + + I +P+ A+N+RL RAAA Sbjct: 298 YGLLRALDRAQVARILVEKLPDTAEWTAVNDRLGRAAA 335 >gi|189211403|ref|XP_001942032.1| translation initiation protein Sua5 [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187978125|gb|EDU44751.1| translation initiation protein Sua5 [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 507 Score = 132 bits (331), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 86/249 (34%), Positives = 131/249 (52%), Gaps = 25/249 (10%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK- 71 R A E D P+A PTETVYGL D+ A++ ++ K RPA NPLI HV + ++ Sbjct: 107 RAAKELQDTNNPVAFPTETVYGLGADATRSAAVKEIFARKGRPADNPLIVHVHSLPQLRA 166 Query: 72 ------------KHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 K DP+ + + FWPGP+T++L + + + P TA L T Sbjct: 167 LLAGRLEAEGDGKILGKDPIPEIYRPVIERFWPGPITIILPVPQNSILAPEVTAGLSTFG 226 Query: 117 FRVPCGFTK-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R+P L+ G PLA PSAN S + S T +H+ + +++ LIIDGG ++G Sbjct: 227 ARMPRSIIALSLLRLCGRPLAAPSANASTRPSPTAAEHV-HDDLREKLDLIIDGGPCEVG 285 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVE------LEYCVDETSTPQSPGMLKSH 229 +EST+V+ ILRPGG+ +E L++ E + +++S P++PGM H Sbjct: 286 VESTVVDGLSNPPA-ILRPGGVTVEQLRQCPGWESVIVGYKDKQAEDSSKPRAPGMKYRH 344 Query: 230 YAPRSQVRL 238 Y+P++ V L Sbjct: 345 YSPKASVLL 353 >gi|15595079|ref|NP_212868.1| hypothetical protein BB0734 [Borrelia burgdorferi B31] gi|218249379|ref|YP_002375233.1| putative Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi ZS7] gi|225548887|ref|ZP_03769864.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi 94a] gi|226321432|ref|ZP_03796959.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi Bol26] gi|2688669|gb|AAC67081.1| conserved hypothetical protein [Borrelia burgdorferi B31] gi|218164567|gb|ACK74628.1| putative Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi ZS7] gi|225370490|gb|EEG99926.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi 94a] gi|226233228|gb|EEH31980.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi Bol26] Length = 337 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 107/339 (31%), Positives = 168/339 (49%), Gaps = 34/339 (10%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I S+ ++KA + + G + PTETVYG+ ++ N A++ ++ +KKRP NPLI HV Sbjct: 6 IISSSQIQKAAKLIKMGELVVFPTETVYGIGANAYNEDAVKMIFLVKKRPINNPLIVHVD 65 Query: 66 DISMVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 + +K+ + P S L L K F PGPLT VL + I + NL T R+P T Sbjct: 66 TVKKIKELSEYIPKSALMLIKKFSPGPLTYVLK--KSIKISRFVSGNLDTVAIRIPANKT 123 Query: 125 K-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS-------KIGL 176 LI+ P+ PSAN S + S TN + L KE+ ++ G I IG+ Sbjct: 124 ALSLIKASKVPIVAPSANISKRPSSTNFEMAL-----KELNGLVRGIIKPEENKDFNIGI 178 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELE--YCVDETST----PQSPGMLKSHY 230 EST+V + V ILRPG + K+ I EL+ Y V+ T +SPG + HY Sbjct: 179 ESTVVGFDLKDNVLILRPGAI----TKKMIENELQGKYTVNYAETKMELEKSPGNIIEHY 234 Query: 231 APRSQVRLRAIHVNPREALIRFGNVPIKN--IENAIISL-----NLSKTGKLKEAAFNLF 283 P+ V L N R L + + I +++ + + N++ L+E A NL+ Sbjct: 235 KPKIPVYLFKSQDNIRRYLNKDTKILITKATLKSYLFNFFWNKKNITVFNTLEEYAQNLY 294 Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 + + ++ I + + LG +INNR+++A++ R Sbjct: 295 KEL-VNSENNYKQILSEFLKDEELGHSINNRIKKASSNR 332 >gi|167464535|ref|ZP_02329624.1| hypothetical protein Plarl_18596 [Paenibacillus larvae subsp. larvae BRL-230010] gi|322383116|ref|ZP_08056943.1| ribosome maturation-like factor [Paenibacillus larvae subsp. larvae B-3650] gi|321152778|gb|EFX45404.1| ribosome maturation-like factor [Paenibacillus larvae subsp. larvae B-3650] Length = 352 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 109/332 (32%), Positives = 165/332 (49%), Gaps = 24/332 (7%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 A+R+A L G +A PTETVYGL D+ A+R ++ K RP+ NPLI H++D Sbjct: 18 KAVREAAALLREGKTVAFPTETVYGLGADAAQTEAVRAIFTAKGRPSDNPLIVHIADCKQ 77 Query: 70 VKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 ++ S P L L WPGPLTL+L + + PL TA L T R P L Sbjct: 78 LEDLVSGVPEVLVPLMDACWPGPLTLILPVRPDA-VSPLVTAGLDTVGIRFPDHPVALAL 136 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G P+A PSAN SG+ S T H+L + I IIDGG + +G+EST++ + + Sbjct: 137 LREAGIPIAAPSANSSGRPSPTKASHVL-EDLDGCIGGIIDGGAAGVGIESTVLQWK-DG 194 Query: 188 KVRILRPGGLEIETLK---RAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL------ 238 V +LRPGG+ +E L+ + + + P++PGM +HYAP ++ L Sbjct: 195 VVHVLRPGGISLEQLQVLLPGVPLREPASSEHVEAPRAPGMKYTHYAPAGKLLLVQGSPA 254 Query: 239 RAIH--VNPREALI-----RFGNVPIKNIENAIISLNLSKTGKLKEA---AFNLFNYMKI 288 +H +N + AL R G + + + +S G L A L++ ++ Sbjct: 255 SRVHQWMNGQLALAKGRGERTGVLTFEEHRTCFEADYVSVCGSLANPDTIARRLYDGLRS 314 Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 D+ + I + P G+G A+ NRL +AA Sbjct: 315 FDEHDITYILAETCPEEGIGQAVMNRLLKAAG 346 >gi|169783792|ref|XP_001826358.1| protein SUA5 [Aspergillus oryzae RIB40] gi|238493617|ref|XP_002378045.1| translation initiation protein Sua5 [Aspergillus flavus NRRL3357] gi|83775102|dbj|BAE65225.1| unnamed protein product [Aspergillus oryzae] gi|220696539|gb|EED52881.1| translation initiation protein Sua5 [Aspergillus flavus NRRL3357] Length = 434 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 86/239 (35%), Positives = 130/239 (54%), Gaps = 25/239 (10%) Query: 23 LPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK---------- 72 +P+A PTETVYGL D+ A++ +Y+ K+RP+ NPLI H+ + M+++ Sbjct: 55 IPVAFPTETVYGLGADATRSDAVQGIYKAKQRPSDNPLIVHIDSLEMLERLLNPQESGST 114 Query: 73 HASVDP------LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 AS P + L FWPGPLT++L S + + T+ L T R+P + Sbjct: 115 SASDSPRNTIPSVYQSLIARFWPGPLTILLPNPSGSLLAKEVTSKLTTFGARMPSSPLAR 174 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LI PLA PSAN S + S T +H+ + I LI+DGG +G+EST+V+ C Sbjct: 175 LLIHVADRPLAAPSANASTKPSPTAAEHVY-HDLQGRIELILDGGSCGVGVESTVVDGLC 233 Query: 186 EKKVRILRPGGLEIETLKRAI---SVELEY---CVDETSTPQSPGMLKSHYAPRSQVRL 238 + ILRPGG+ IE ++ +V+L Y +D P++PGM HY+P+++V L Sbjct: 234 DPPA-ILRPGGIGIEEIRTCAGWENVQLGYHDGTLDVKEIPRAPGMKYRHYSPKARVVL 291 >gi|260102572|ref|ZP_05752809.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus helveticus DSM 20075] gi|260083599|gb|EEW67719.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus helveticus DSM 20075] Length = 339 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 108/341 (31%), Positives = 162/341 (47%), Gaps = 32/341 (9%) Query: 1 MQIMS--ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58 ++IM I + + +A + L G +A PTETVYGL + +++ +Y K RP+ N Sbjct: 4 IKIMETKIFKKDQIDEAVKLLAEGELVAFPTETVYGLGAIATKEKSVKGVYAAKGRPSDN 63 Query: 59 PLICHVSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 PLI VSD M++++A P + L K F PGPLTL+L + + T L T F Sbjct: 64 PLIVTVSDEKMMERYAKEVPERAKKLIKHFCPGPLTLLL-FVKPGTLPDAVTGGLDTVAF 122 Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R P T LI G+P+ PSAN S + S T +H+ + +I IIDGG ++ GL Sbjct: 123 RCPDDQLTHDLIAKLGYPIVGPSANISTKPSPTTAEHVY-HDLKDKIAGIIDGGPTRFGL 181 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPR 233 ESTI+++ + + +LRPG + E L + ++ V + P++PGM HYAP Sbjct: 182 ESTIIDLSVKTPI-VLRPGEITPEELSEVLGEKVLINTGKVADKDVPKAPGMKYRHYAPS 240 Query: 234 SQV-------RLRAIHVNPREALIRFG------NVPIKNIENAIISLNLSKTGKLKEAAF 280 V I N + + G N+P +N +L K L +A Sbjct: 241 EPVVVVDDPADFGKIDFNDKTGVAALGSVLDQINLPEEN------KFDLGKN--LIDADH 292 Query: 281 NLFNYMKIADD-SGASSIAFSSIPNHGLGIAINNRLERAAA 320 NLF ++ DD +I +A NRL +AA Sbjct: 293 NLFGALRYFDDKDDIETIYVQGFDEGEESLAYMNRLNKAAG 333 >gi|295677567|ref|YP_003606091.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. CCGE1002] gi|295437410|gb|ADG16580.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. CCGE1002] Length = 350 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 106/344 (30%), Positives = 165/344 (47%), Gaps = 57/344 (16%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS---DIS 68 + A LDAG +A PTETVYGL D+ NP A+ R+Y K RPA +P+I H++ D + Sbjct: 22 IEHAAALLDAGGLVAFPTETVYGLGGDAENPDAVARIYAAKGRPANHPVIVHLAPHGDPN 81 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 +H D + L FWPGPLTL+L I + + R P + L Sbjct: 82 YWVEHLPAD--AQRLIDAFWPGPLTLILK--RAARIPAAVSGGQDSVGLRCPSHPVAQAL 137 Query: 128 IETY-----GH-PLAIPSANRSGQISITNVKHI---LSSSICKEIPLIIDGGISKIGLES 178 +E + GH +A PSANR G +S T +H+ S+I ++DGG S +G+ES Sbjct: 138 LEAFSALRGGHGGVAAPSANRFGHVSPTTAQHVRDEFGSAIH-----VLDGGASDVGIES 192 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD--ETSTPQSPGMLKSHYAPRSQV 236 TI+++ +LRPG + + + + E D + + P++ G LK+HYAPR+ + Sbjct: 193 TILDL-SRGFPALLRPGRVTPQDIADVLG-EAPRLPDGSDATAPRASGTLKAHYAPRTPL 250 Query: 237 RLRAIHVNPREALIRFGNV-PIKNI----ENAIISLNLSKTGKLKEA------------- 278 AL+ FG + P+ + E + S+ G+ +A Sbjct: 251 -----------ALLPFGELEPLLAVREPGERVALVARASRAGQWADADGVYFVAAPEDPH 299 Query: 279 --AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 A L+ ++ D + + I +P+ IA+N+RL RAAA Sbjct: 300 VYARELYGLLRALDRANVTRILIEKLPDTIEWIAVNDRLGRAAA 343 >gi|307595866|ref|YP_003902183.1| Sua5/YciO/YrdC/YwlC family protein [Vulcanisaeta distributa DSM 14429] gi|307551067|gb|ADN51132.1| Sua5/YciO/YrdC/YwlC family protein [Vulcanisaeta distributa DSM 14429] Length = 375 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 107/348 (30%), Positives = 168/348 (48%), Gaps = 43/348 (12%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D++ +++A +++ G +A PTETVYGL D+ N A ++++ K RP NPLI H+SD+ Sbjct: 28 DNSIIKEASDYIKNGYLVAFPTETVYGLGADTFNGEACLKIFKAKGRPPDNPLIVHISDM 87 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + + + A + + + + WPGPLTL+L + D+ T T R P Sbjct: 88 NELDRVAIDIPEIVFPVIRKAWPGPLTLILP--KSPDVPKEVTGGRNTVAVRSPAHPVAL 145 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLI-IDGGISKIGLESTIVNVQ 184 LI++ P+A PSAN+SG+ S T +HI+ + +I +D G + G+ESTIV+V Sbjct: 146 ALIKSSRTPIAAPSANKSGRPSPTLAEHIIEDYANDNVEMILLDAGPTFFGVESTIVDVT 205 Query: 185 CEKKVRILRPGGLEIETLKRAISVEL---EYC--VDETSTPQSPGMLKSHYAPRSQVRLR 239 V +LRPG IE L+ + E+ E+ + E +PGM HYAPR+Q L Sbjct: 206 RNPPV-LLRPGPFTIEELRSLFNTEIVVPEFARGLGEADVALAPGMKYKHYAPRTQ--LI 262 Query: 240 AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD--------D 291 + ++LI+ N N + + L T KE A L Y +I + Sbjct: 263 VVECEKYDSLIKLLRDVALNYLNKKLKVALLIT---KETASELMKYPEINELPIIIMGYR 319 Query: 292 SGASSIAFS-------------------SIPNHGLGIAINNRLERAAA 320 +IA S I G+G+A+ NRL +A+ Sbjct: 320 ENPYTIAASLFDSLRSLDRLNVDLGIAEGIEERGIGLAVMNRLRKASG 367 >gi|83719082|ref|YP_441225.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia thailandensis E264] gi|167618052|ref|ZP_02386683.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia thailandensis Bt4] gi|257140109|ref|ZP_05588371.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia thailandensis E264] gi|83652907|gb|ABC36970.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia thailandensis E264] Length = 341 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 108/335 (32%), Positives = 162/335 (48%), Gaps = 42/335 (12%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 +A LDAG +A PTETVYGL D++NP A+ R+Y K RPA +P+I H++ S Sbjct: 15 EAAALLDAGELVAFPTETVYGLGGDAQNPAAVARIYAAKGRPANHPVIVHLAPGS--DPG 72 Query: 74 ASVDPLSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 VD L KL FWPGPLTL+L I + + R P + L+ Sbjct: 73 YWVDSLPADAQKLIDAFWPGPLTLILK--RAARIPDAVSGGQDSVGLRCPSHPVAQALLR 130 Query: 130 TY-----GH-PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + GH +A PSANR G +S T +H+ + ++DGG S +G+ESTI+++ Sbjct: 131 AFDARRGGHGGVAAPSANRFGHVSPTTAQHVRDE--FGDAVRVLDGGPSDVGIESTILDL 188 Query: 184 QCEKKVRILRPGGLEIETLKRAISV--ELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241 +LRPG + + + V L D T+ P++ G LK+HYAPR+ + L A Sbjct: 189 -SRGFPALLRPGDVSPRQIADVLGVAPRLPDGSDATA-PRASGTLKAHYAPRTPLALAAF 246 Query: 242 H-VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEA---------------AFNLFNY 285 + P A R P+ A+++ +S+ G A A L+ Sbjct: 247 ERLEPLLAAARDAGKPV-----ALVA-RVSRAGAWAHAQGVHFVAAPEDPRVYARELYGL 300 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ D + + I +P+ IA+N+RL RAAA Sbjct: 301 LRALDRAQVARILVEKLPDTVEWIAVNDRLGRAAA 335 >gi|257077109|ref|ZP_05571470.1| Sua5 superfamily-related protein [Ferroplasma acidarmanus fer1] Length = 348 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 104/335 (31%), Positives = 165/335 (49%), Gaps = 26/335 (7%) Query: 2 QIMSITDSN---ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58 +I+ I + N A++ + +G + PTETVYGL D+ NP A +++ K RPA N Sbjct: 3 RIIHINNQNENYAIKVCAGIIKSGGTVVFPTETVYGLGADAFNPGACSKIFIAKNRPADN 62 Query: 59 PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 PLI H+S++ M+ + A +D + WP PLTL+L + + +A L T C R Sbjct: 63 PLIVHISNMKMLDQVAYIDDGLRKKMENIWPSPLTLLLK--KKESVPDIVSAGLDTVCVR 120 Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 P +LIE G P+A PSAN S + SI + + + + + IID G + G+E Sbjct: 121 FPDNKIALELIEASG-PIAAPSANISTRPSIVDSETAV-EELDGRVDAIIDAGRVRYGVE 178 Query: 178 STIVNVQCEKKVRILRPGGL---EIETLKRAISVE-LEYCVDETSTPQSPGMLKSHYAPR 233 STI++ E R+LR G +IE++ I V+ L +++ +PG+ HYAP Sbjct: 179 STILDCTAE-PYRLLRAGAFSVEDIESIIGKIYVDPLAKGYNQSDVALTPGLKYRHYAPS 237 Query: 234 SQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSK--TGK-------LKEAAFNLFN 284 ++ L + E +F + I + S K +GK + E A NLF Sbjct: 238 KKLFL----IENEEEFKKFISSEISKDFLVLCSKENEKYASGKSIVLGSDIYEIAHNLFY 293 Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 + D+SG P G+G+A+ NR+ +A+ Sbjct: 294 DFRYLDNSGKLYGVIQGFPESGIGLAVMNRIRKAS 328 >gi|307244020|ref|ZP_07526139.1| Sua5/YciO/YrdC/YwlC family protein [Peptostreptococcus stomatis DSM 17678] gi|306492544|gb|EFM64578.1| Sua5/YciO/YrdC/YwlC family protein [Peptostreptococcus stomatis DSM 17678] Length = 345 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 111/343 (32%), Positives = 170/343 (49%), Gaps = 41/343 (11%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + + L +G + PTETVYGL ++ + A ++Y+ K RP+ NPL+ H++D Sbjct: 14 DKDLIAVFASMLASGKTVIFPTETVYGLGANALDEEAAAKIYQAKGRPSDNPLLVHIADK 73 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA-NLKTACFRVPCG-FT 124 V ++D + L FWPGPLT+V DI P T+ L T R+P Sbjct: 74 EDVYGLVENIDDRAKLLMDKFWPGPLTIV---FKKKDIIPDRTSGGLDTVAIRMPSDQVA 130 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + LI G P+A PSAN SG+ S T +HI+ + + I+ GG G+ESTIV++ Sbjct: 131 RDLIRQAGVPIAAPSANISGRPSPTKPEHII-RDMDGRVDGILVGGPCNYGVESTIVDLS 189 Query: 185 CEKKVRILRPGGLEIETLKRAIS-VELEYCV---DETSTPQSPGMLKSHYAPRSQVRLRA 240 + + +LRPG + +E L + V+L+ + D+ ++PGM HY+P++QV + Sbjct: 190 GDVAM-VLRPGSITLEMLGEVLGQVDLDPSLKNKDDNIRAKAPGMKYKHYSPQAQVYI-- 246 Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKL--------------------KEAAF 280 + +E R V ++NA L KTG L E A Sbjct: 247 VRAGDQEDFAR--RVDELCLDNAKKGL---KTGVLTRSSDQHPYQAQVFDLGESDAEVAK 301 Query: 281 NLFNYMKIADDSGASSIAF-SSIPNHGLGIAINNRLERAAAPR 322 NLF+ + I+ D + IA+ GLG+AI NRL++AA R Sbjct: 302 NLFDSL-ISLDRESIDIAYVPYFEEKGLGVAIMNRLKKAAGYR 343 >gi|294793889|ref|ZP_06759026.1| Sua5/YciO/YrdC/YwlC family protein [Veillonella sp. 3_1_44] gi|294455459|gb|EFG23831.1| Sua5/YciO/YrdC/YwlC family protein [Veillonella sp. 3_1_44] Length = 347 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 105/320 (32%), Positives = 164/320 (51%), Gaps = 33/320 (10%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-VDPLSLHL 83 ++IPTETVYGL + +P A+ ++Y K RP+ NPLI HV + +K + + + L Sbjct: 31 VSIPTETVYGLGANGLDPEAMDKIYAAKGRPSDNPLILHVPNSESIKPLVTEISATAQAL 90 Query: 84 AKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSAN 141 FWPGPLT+ L +D+ P +T L R P + L+E G P+A PSAN Sbjct: 91 MDAFWPGPLTIT---LPKSDLVPDRATGGLPRVALRCPDHKVCRALLERAGVPVAAPSAN 147 Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIET 201 SG+ S T + + + I I+D G IG+EST+V V + KV ILRPGG+ Sbjct: 148 ISGRPSPTTAQDVY-HDMKGRISYILDAGPCTIGVESTVVEVH-DDKVIILRPGGITKAQ 205 Query: 202 LKRAISVELEY---CVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIK 258 L+ +S +EY V+ T+ P++PGM +HYAP + + + NP + F + + Sbjct: 206 LEGVVST-VEYDTALVNATTKPKAPGMKYTHYAPDAP--MTVVVGNPEDIASMFKALS-E 261 Query: 259 NIENAIISLNLSKTGKL--KEAAF--NLFNY----MKIADDSGASSIAFS---------- 300 IE I L +T L ++ F + F + + + D S + F+ Sbjct: 262 GIEGPIGCLVSHETYNLIKEDGRFMCHCFGHHGDALALGHDFYKSLLHFNENHVTLILAE 321 Query: 301 SIPNHGLGIAINNRLERAAA 320 + + G G+AI NR+E+A++ Sbjct: 322 GVDDDGFGVAIMNRMEKASS 341 >gi|226321225|ref|ZP_03796758.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi 29805] gi|226233354|gb|EEH32102.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi 29805] Length = 337 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 107/339 (31%), Positives = 168/339 (49%), Gaps = 34/339 (10%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I S+ ++KA + + G + PTETVYG+ ++ N A++ ++ +KKRP NPLI HV Sbjct: 6 IISSSQIQKAAKLIKMGELVVFPTETVYGIGANAYNEDAVKMIFLVKKRPINNPLIVHVD 65 Query: 66 DISMVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 + +K+ + P S L L K F PGPLT VL + I + NL T R+P T Sbjct: 66 TVKKIKELSEYIPKSALMLIKKFSPGPLTYVLK--KSIKISRFVSGNLDTVAIRIPANKT 123 Query: 125 K-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS-------KIGL 176 LI+ P+ PSAN S + S TN + L KE+ ++ G I IG+ Sbjct: 124 ALSLIKASKVPIVAPSANISKRPSSTNFEMAL-----KELNGLVRGIIKPEENKDFNIGI 178 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELE--YCVDETST----PQSPGMLKSHY 230 EST+V + V ILRPG + K+ I EL+ Y V+ T +SPG + HY Sbjct: 179 ESTVVGFDLKDNVLILRPGTI----TKKMIENELQGKYTVNYAETKMELEKSPGNIIEHY 234 Query: 231 APRSQVRLRAIHVNPREALIRFGNVPIKN--IENAIISL-----NLSKTGKLKEAAFNLF 283 P+ V L N R L + + I +++ + + N++ L+E A NL+ Sbjct: 235 KPKIPVYLFKSQDNIRRYLNKDTKILITKATLKSYLFNFFWDKKNITVFNTLEEYAQNLY 294 Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 + + ++ I + + LG +INNR+++A++ R Sbjct: 295 KEL-VNSENNYKQILSEFLKDEELGHSINNRIKKASSNR 332 >gi|213410030|ref|XP_002175785.1| SUA5/yciO/yrdC family protein [Schizosaccharomyces japonicus yFS275] gi|212003832|gb|EEB09492.1| SUA5/yciO/yrdC family protein [Schizosaccharomyces japonicus yFS275] Length = 402 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 108/345 (31%), Positives = 164/345 (47%), Gaps = 53/345 (15%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS---------DISMVKKHAS 75 +A PTETVYGL D+R A+ +Y+ K RPA NPLI H+ D + K Sbjct: 56 VAFPTETVYGLGADARKSEAVLNIYKAKNRPADNPLITHIGSLKQLSELIDSTTQKNKLK 115 Query: 76 VD-------PLSLH-LAKLFWPGPLTLVLDLLST--TDIHPLSTANLKTACFRVP-CGFT 124 D PL L +WPGP++++L + T + + + TA T R+P Sbjct: 116 GDSGLWENIPLVYKPLIDRYWPGPMSILLPIEGTEGSPVSKVVTAGQSTFAVRMPEHPVA 175 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 LI PLA PSAN S + S T H+ + ++PLI+DGG +GLEST+VN Sbjct: 176 LALILKSKAPLAAPSANASTRPSPTLAAHVF-HDLNGKLPLILDGGPCGVGLESTVVNGL 234 Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCV--------DETSTPQSPGMLKSHYAPRSQV 236 C+ V ILRPGG+ +E ++ V V ++ PQ+PGM HY+P ++V Sbjct: 235 CDPPV-ILRPGGISLEDIQSCGGVWSRTVVYKPTDDVEKKSFVPQTPGMKYRHYSPTAKV 293 Query: 237 RL---------------RAIHVN-----PREALIRFGNVPIKNIENAI-ISLNLSKTGKL 275 L +H N P+ ++ ++ + + +S+ L +TG Sbjct: 294 LLFEGMSEAEANDILQNDYLHANQNTKPPKIGVLTSCRWNVEKFSDMVSVSMCLGRTG-- 351 Query: 276 KEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 KE NLF+ ++ D+ I + + G+AI NRL +AA+ Sbjct: 352 KEIRRNLFSMIRDMDEKQIDIILVEGVESDHEGLAIMNRLGKAAS 396 >gi|167378326|ref|XP_001734759.1| sua5 [Entamoeba dispar SAW760] gi|165903590|gb|EDR29072.1| sua5, putative [Entamoeba dispar SAW760] Length = 289 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 89/233 (38%), Positives = 122/233 (52%), Gaps = 14/233 (6%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 DS + A + + G + PTETVYGL D P AI +++++K RP NPLICH+SDI Sbjct: 28 DSKLITPAAKIIQQGGLVCFPTETVYGLGADVFQPNAINQIFKVKGRPNDNPLICHISDI 87 Query: 68 SMVKK---HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 M+ K H S D + L K FWPG LT++ T TA L T R+P Sbjct: 88 EMLNKLAAHVSED--AHKLIKRFWPGALTIIFPRNETVPNE--VTAGLNTVGVRMPSHPI 143 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + I+ P+A PSAN S + S T +H + + I +IIDGG IG+EST++ + Sbjct: 144 AYEFIKQCKTPIAAPSANLSTKPSPTIGRHCI-DDLNGRIEMIIDGGACDIGVESTVLLL 202 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDET----STPQSPGMLKSHYAP 232 E ILRPGG+ +E L+ I Y + + P +PGM HYAP Sbjct: 203 GNEHPT-ILRPGGVTLEMLREVIPSTQVYKMSTNLSLEAKPPTPGMKYRHYAP 254 >gi|257093416|ref|YP_003167057.1| Sua5/YciO/YrdC/YwlC family protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045940|gb|ACV35128.1| Sua5/YciO/YrdC/YwlC family protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 352 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 86/247 (34%), Positives = 125/247 (50%), Gaps = 18/247 (7%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 TD + +A L AG +A PTETVYG+ D+ NP A+ R++ K RPA +PLI H+ Sbjct: 3 TDQAVIDRAVALLQAGELVAFPTETVYGVGADAANPAAVGRIFTAKGRPADHPLIVHLPG 62 Query: 67 ISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125 + + A P + LA+ FWPGPLTL+L + + T T RVP Sbjct: 63 DGGLDRWARDIPTRAWELAEAFWPGPLTLILKRAPA--VPAIVTGGQDTVGVRVPAHPLA 120 Query: 126 KLIETYGHP----------LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 + +A PSANR G+IS T H+ + + +PLI+DGG +G Sbjct: 121 LALLRAYAEAGGGVDGLCGIAAPSANRFGRISPTEAAHV-RAELGDAVPLILDGGRCPVG 179 Query: 176 LESTIVNVQ--CEKKVRILRPGGLEIETLKRAISVELEYCVD--ETSTPQSPGMLKSHYA 231 +ESTIV++ ++ R+LRPG + E + I V E + TP+ G L +HYA Sbjct: 180 IESTIVDLTRGDDQAPRLLRPGRVTPEQIAAVIGVLPEIVTRPADDGTPRVSGSLAAHYA 239 Query: 232 PRSQVRL 238 P + +R Sbjct: 240 PTTPLRF 246 >gi|225573947|ref|ZP_03782592.1| hypothetical protein RUMHYD_02041 [Blautia hydrogenotrophica DSM 10507] gi|225038806|gb|EEG49052.1| hypothetical protein RUMHYD_02041 [Blautia hydrogenotrophica DSM 10507] Length = 356 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 101/336 (30%), Positives = 166/336 (49%), Gaps = 25/336 (7%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 + + + +A + L G +A PTETVYGL ++ + A ++Y K RP+ NPLI H++ + Sbjct: 14 EQDIISQAGKILREGGLVAFPTETVYGLGGNALDAAASEKIYAAKGRPSDNPLIVHIARM 73 Query: 68 SMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 ++K + P LA+ WPGPLT++L + ++ +T L + R P + Sbjct: 74 EDLEKIVTGVPKKAKILAEACWPGPLTMILP--KSEEVPYETTGGLDSVAVRYPSHPVAQ 131 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LI G +A PSAN SG+ S T H+ + + +I+DGG IG+ESTIV+ Sbjct: 132 ALILAAGGFVAAPSANTSGRPSPTTAAHV-QEDLTGAVDMILDGGQVGIGIESTIVDF-T 189 Query: 186 EKKVRILRPGGLEIETLKRAIS-VELEYCV---DETSTPQSPGMLKSHYAPRSQVRL--- 238 EK +LRPG + +E LK + V+++ + D + P++PGM HYAP++++ + Sbjct: 190 EKIPTVLRPGYISLEKLKELLGEVKMDKGLLRADASQRPKAPGMKYRHYAPKAELTIVEG 249 Query: 239 ------RAIHVNPREALIRFGNVPIKNIENAI------ISLNLSKTGKLKEAAFNLFNYM 286 I+ +EA R + I E + + K + A +L+ + Sbjct: 250 STEYVVAYINQKAKEASKRGRQIGIIGTEETFPYYSSGVVRCIGSRKKEEGIALHLYEVL 309 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 + D +I S +G AI NRL +AA R Sbjct: 310 RDFDQCEVEAIYSESFDTPKMGQAIMNRLLKAAGHR 345 >gi|312222358|emb|CBY02298.1| hypothetical protein [Leptosphaeria maculans] Length = 543 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 87/262 (33%), Positives = 138/262 (52%), Gaps = 26/262 (9%) Query: 1 MQIMSITDSNALRKAC-EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 +Q + D +L++A E L+ P+A PTETVYGL D+ +A++ ++ K RPA NP Sbjct: 131 IQYVEGKDYESLKRAAGELLNTDTPVAFPTETVYGLGADATRSSAVKAIFAAKGRPADNP 190 Query: 60 LICHVSDISMVKK---------HASVDP-------LSLHLAKLFWPGPLTLVLDLLSTTD 103 LI H+ + ++ +V P + + + FWPGP+T++L ++ Sbjct: 191 LIVHIHSLRQLRAILSGGKENLKGAVGPEDDPIPAIYRPIIERFWPGPITIILPAPDSSM 250 Query: 104 IHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKE 162 + P TA L T R+P L+ G PLA PSAN S + S T +H+ + + Sbjct: 251 LAPEVTAGLPTFGARMPRSILALSLLRLCGRPLAAPSANASTRPSPTAAEHVF-DDLQER 309 Query: 163 IPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVE---LEYCVDE--- 216 I IIDGG ++G+EST+V+ ILRPGG+ +E L++ E + Y + Sbjct: 310 IRTIIDGGPCEVGVESTVVD-GLSSPPSILRPGGITVEQLRQCPGWENVVVGYKDSQEGG 368 Query: 217 TSTPQSPGMLKSHYAPRSQVRL 238 S P++PGM HY+P+++V L Sbjct: 369 ASKPRAPGMKYRHYSPKAKVIL 390 >gi|325663226|ref|ZP_08151676.1| hypothetical protein HMPREF0490_02417 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470680|gb|EGC73910.1| hypothetical protein HMPREF0490_02417 [Lachnospiraceae bacterium 4_1_37FAA] Length = 509 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 104/337 (30%), Positives = 169/337 (50%), Gaps = 31/337 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + + A L G +A PTETVYGL + A ++ Y K RP+ NPLI H+++ Sbjct: 16 DEDVIGMAGVILKEGGLVAFPTETVYGLGAHALKEEAAKKTYAAKGRPSDNPLIVHIAEY 75 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCG-FT 124 +++ A ++ + LA FWPGPLT++ + + + P +T L T R+P Sbjct: 76 RALEEIAVNIPDKTALLANHFWPGPLTMIFE---KSALVPYGTTGGLDTVAVRMPADEVA 132 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + +I G ++ PSAN SG+ S T H+ + +I +IIDGG +IG+ESTI+++ Sbjct: 133 RAIILAGGGYVSAPSANTSGRPSPTTAMHV-KEDLDGKIDMIIDGGSVEIGVESTILDMT 191 Query: 185 CEKKVRILRPGGLEIETLKRAIS--VELEYCVDETS--TPQSPGMLKSHYAPRSQVRLRA 240 + ILRPG + E L+ I E + V + S P++PGM HYAP++ +L Sbjct: 192 VTPPM-ILRPGAITKEMLEEVIGEVTEDQAIVSDKSKEAPKAPGMKYRHYAPKA--KLMI 248 Query: 241 IHVNPREALIRFGNVPIKN----IENAIISLNLS----KTGKLKE---------AAFNLF 283 I + +EA+ V + + II+ + + K G +K A NL+ Sbjct: 249 IEGDTKEAVKAIRQVAFEQERLGYKVGIIATDETAEKYKRGIVKNIGTRENEYTIAQNLY 308 Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ D+ I + G+G A+ NRL++AA Sbjct: 309 RVLREFDEEDVDYIYSEAFAMDGIGSAVMNRLKKAAG 345 >gi|167579982|ref|ZP_02372856.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia thailandensis TXDOH] Length = 341 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 108/335 (32%), Positives = 162/335 (48%), Gaps = 42/335 (12%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 +A LDAG +A PTETVYGL D++NP A+ R+Y K RPA +P+I H++ S Sbjct: 15 EAAALLDAGELVAFPTETVYGLGGDAQNPAAVARIYAAKGRPANHPVIVHLAPGS--DPG 72 Query: 74 ASVDPLSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 VD L KL FWPGPLTL+L I + + R P + L+ Sbjct: 73 YWVDSLPADAQKLIDAFWPGPLTLILK--RAARIPDAVSGGQDSVGLRCPSHPVAQALLR 130 Query: 130 TY-----GH-PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + GH +A PSANR G +S T +H+ + ++DGG S +G+ESTI+++ Sbjct: 131 AFDARRGGHGGVAAPSANRFGHVSPTTAQHVRDE--FGDAVHVLDGGPSDVGIESTILDL 188 Query: 184 QCEKKVRILRPGGLEIETLKRAISV--ELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241 +LRPG + + + V L D T+ P++ G LK+HYAPR+ + L A Sbjct: 189 -SRGFPALLRPGDVSPRQIADVLGVAPRLPDGSDATA-PRASGTLKAHYAPRTPLALAAF 246 Query: 242 H-VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEA---------------AFNLFNY 285 + P A R P+ A+++ +S+ G A A L+ Sbjct: 247 ERLEPLLAAARDAGEPV-----ALVA-RVSRAGAWAHAQGVHFVAAPEDPRVYARELYGL 300 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ D + + I +P+ IA+N+RL RAAA Sbjct: 301 LRALDRAQVARILVEKLPDTVEWIAVNDRLGRAAA 335 >gi|320582245|gb|EFW96463.1| hypothetical protein HPODL_2120 [Pichia angusta DL-1] Length = 380 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 103/327 (31%), Positives = 159/327 (48%), Gaps = 33/327 (10%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-----ASVDPL 79 + P+ETVYGL S + +++ +Y K RPA NPLI HVS I +K+ + + Sbjct: 51 VGFPSETVYGLGASSLSSESVKSIYAAKNRPADNPLISHVSSIDQLKRKLMVPGQEIPEI 110 Query: 80 SLHLAKLFWPGPLTLVLDLLSTTDIHPLS---TANLKTACFRVPCG-FTKKLIETYGHPL 135 L + FWPGPLT++L + P+S T+ T R+P + LI PL Sbjct: 111 YAPLIEKFWPGPLTILLPMPENVHDSPISQLVTSGQPTFAVRMPQNPVARALIYISDLPL 170 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 A PSAN S + S T H+ + IPLI+DGG S +GLEST+V+ C+ + +LRPG Sbjct: 171 AAPSANASTRPSPTTAAHVY-HDLKGRIPLILDGGPSDVGLESTVVDGLCDPPM-LLRPG 228 Query: 196 GLEIETLKRAISVELEYCVDETSTP------QSPGMLKSHYAPRSQV-----------RL 238 G+ +E +K+A + V T ++PGM HY+P ++V ++ Sbjct: 229 GISLEQIKQAGGPRWQNIVVAKKTAGKLEPVRTPGMKYRHYSPTARVVLFNNCGDGKEKV 288 Query: 239 RAI-----HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293 +A N + AL++ N + +IS + + E NLF+ ++ D Sbjct: 289 KAYLEQNNLQNKKVALLKTRRFAPANDISPLISYDGTLGTSGDEIQRNLFSALRALDAEE 348 Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAA 320 I + G+AI NRL +AA+ Sbjct: 349 YDYILIEGVDETAEGLAIMNRLSKAAS 375 >gi|327303106|ref|XP_003236245.1| translation initiation protein Sua5 [Trichophyton rubrum CBS 118892] gi|326461587|gb|EGD87040.1| translation initiation protein Sua5 [Trichophyton rubrum CBS 118892] Length = 445 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 88/266 (33%), Positives = 138/266 (51%), Gaps = 26/266 (9%) Query: 11 ALRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 AL +A E + + +P+A PTETVYGL D+ A++ +Y+ K+RP+ NPLI HVS Sbjct: 48 ALIEAAEAIRTSDIPVAFPTETVYGLGADATRSGAVQGIYKAKQRPSDNPLIVHVSSRDQ 107 Query: 70 VKK----------------HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK 113 +++ +S+ + L K FWPGPL+++L S + P TANL Sbjct: 108 LERLLMDPKQSNGAIKCRSTSSIPKIYEPLIKRFWPGPLSIILPNPSHLPLAPEVTANLP 167 Query: 114 TACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172 T R+P + LI P+A PSAN S + S T +H+ + + I +I+DGG Sbjct: 168 TFAARMPSSPLARLLIALADRPVAAPSANASTKPSPTTAQHVF-TDLQGRIEMILDGGPC 226 Query: 173 KIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVE------LEYCVDETSTPQSPGML 226 +G+EST+V+ ILRPGG+ I+ L+ E + + + P++PGM Sbjct: 227 GVGVESTVVD-GLSSPPAILRPGGVGIDELRTCPGWEDVKIGYKDGALQGKTAPRAPGMK 285 Query: 227 KSHYAPRSQVRLRAIHVNPREALIRF 252 HY+P+++V L +P + R Sbjct: 286 YKHYSPKARVVLYEPGQDPNSVMNRI 311 >gi|302509580|ref|XP_003016750.1| hypothetical protein ARB_05042 [Arthroderma benhamiae CBS 112371] gi|291180320|gb|EFE36105.1| hypothetical protein ARB_05042 [Arthroderma benhamiae CBS 112371] Length = 445 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 90/254 (35%), Positives = 138/254 (54%), Gaps = 28/254 (11%) Query: 10 NALRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 AL KA E + + +P+A PTETVYGL D+ A++ +Y+ K+RP+ NPLI HVS + Sbjct: 47 TALLKAAEAIRTSDIPVAFPTETVYGLGADATRSGAVQGIYKAKQRPSDNPLIVHVSSRA 106 Query: 69 MVKKHASVDP------LSLH-----------LAKLFWPGPLTLVLDLLSTTDIHPLSTAN 111 +++ VDP + H L + FWPGPL+++L S + P TAN Sbjct: 107 QLERLL-VDPKQSNGAIKCHSTSSIPKIYEPLIERFWPGPLSIILSNPSHLPLAPEVTAN 165 Query: 112 LKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 L T R+P + LI P+A PSAN S + S T +H+ + + I +I+DGG Sbjct: 166 LPTFAARMPSSPLARLLIALADRPVAAPSANASTKPSPTTAQHVF-TDLQGRIEMILDGG 224 Query: 171 ISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS---VELEY---CVDETSTPQSPG 224 +G+EST+V+ ILRPGG+ I+ L+ V++ Y + + P++PG Sbjct: 225 PCGVGVESTVVD-GLSSPPAILRPGGVGIDELRTCPGWEDVQIGYKDGALQGKTAPRAPG 283 Query: 225 MLKSHYAPRSQVRL 238 M HY+P+++V L Sbjct: 284 MKYKHYSPKARVVL 297 >gi|237793460|ref|YP_002861012.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum Ba4 str. 657] gi|229261243|gb|ACQ52276.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum Ba4 str. 657] Length = 351 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 104/338 (30%), Positives = 171/338 (50%), Gaps = 32/338 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + + +A + L G + PTETVYGL ++ + A++ ++E K RP NPLI H+S + Sbjct: 14 DEHVISEAGDILRQGGLVVFPTETVYGLGANALDKNAVKGIFEAKGRPQDNPLIVHISKM 73 Query: 68 SMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLST-ANLKTACFRVPCG-FT 124 ++K P ++ L FWPGPLT++ L DI P T A L + R+P Sbjct: 74 KDIEKLVQKIPSVAEKLMDKFWPGPLTII---LKKKDIIPNETSAGLDSIGIRMPSNKIA 130 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 KLI G P+A PSAN SG+ S T+V+ + + ++ +I+ G S++G+EST+++ Sbjct: 131 MKLISMAGVPIAAPSANLSGKPSPTDVETCI-EDLDGKVNIILGGDNSEVGVESTVIDCT 189 Query: 185 CEKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 ILRPGG+ +E LK I + D+ P++PGM HYAP++ +++ Sbjct: 190 INPPC-ILRPGGITLEMLKEVDSNIYIDPAIMKKPDKDLKPKAPGMKYRHYAPKAPLKII 248 Query: 240 AIHVNPR------------EALIRFGNVPI-KNIEN----AIISLNLSKTGKLKEAAFNL 282 +N +A + G + + I+N ++S+ K L A NL Sbjct: 249 KGDLNKTIEKINEMVQNYIDAQKKVGIIATDETIDNYKKGDVVSIGSRK--HLNTIAHNL 306 Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 F ++ D+ I + +G+AI NRL+++A Sbjct: 307 FYVLRSFDEKNVDLILSEAFEEKDMGVAIMNRLKKSAG 344 >gi|297539832|ref|YP_003675601.1| Sua5/YciO/YrdC/YwlC family protein [Methylotenera sp. 301] gi|297259179|gb|ADI31024.1| Sua5/YciO/YrdC/YwlC family protein [Methylotenera sp. 301] Length = 327 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 88/255 (34%), Positives = 141/255 (55%), Gaps = 15/255 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 +L +A L G +AIPTETVYGLA D+ N A+++++ K+RPA +PLI H++DIS V Sbjct: 4 SLDEAARRLQNGEVVAIPTETVYGLAADATNDIALQKIFTTKQRPADHPLIVHIADISQV 63 Query: 71 KKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + + P +++ LAK FWPG LTL+L + + + T RVP +L+ Sbjct: 64 TEWVTDFPEVAVELAKAFWPGALTLILP--AKHHVSRVVRGGEPTIALRVPNHPIALELL 121 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 + +A PSAN Q+S T H+ + ++P ++DGG ++G+ESTIV+V + + Sbjct: 122 KLSKLSVAAPSANLFTQLSPTTATHV-EVGLGADVP-VLDGGACQVGIESTIVSVAADGQ 179 Query: 189 VRILRPGGLEIETLKRAIS------VELEYCVDETSTPQSPGMLKSHYAPRSQVRL---R 239 ++LRPG + + + VE + ++TP++PG HY+PR+ + L R Sbjct: 180 WQLLRPGMISEADIAKVAGRPQRKVVESDKAAATSTTPKAPGQHALHYSPRTPLFLFKDR 239 Query: 240 AIHVNPREALIRFGN 254 A + E LI G Sbjct: 240 AALIVTSEQLIAAGK 254 >gi|145591558|ref|YP_001153560.1| Sua5/YciO/YrdC/YwlC family protein [Pyrobaculum arsenaticum DSM 13514] gi|145283326|gb|ABP50908.1| translation factor SUA5 [Pyrobaculum arsenaticum DSM 13514] Length = 358 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 106/340 (31%), Positives = 164/340 (48%), Gaps = 34/340 (10%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + +R A L G +A PTETVYGL + ++++ K RP NPLI HV + Sbjct: 27 DPSVIRTAAGVLRNGGIVAAPTETVYGLFAHAYREDGCAKVFKAKGRPMDNPLIVHVDTV 86 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 M A + + + WPGP+T+V+ S + TA L T R P Sbjct: 87 EMAMAVADIPNDVAEVLRRVWPGPITVVVP--SRGVVARCVTAGLPTVAVRAPAHPIPLS 144 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 +I+ G P+A PSAN++G+ S T H++ + E+ ++IDGG + G+ESTI++V Sbjct: 145 IIKELGAPIAGPSANKAGRPSPTTAGHVV-EDLDGEVDVVIDGGPTFFGVESTIIDVTKR 203 Query: 187 KKVRILRPGGLEIETLKR---AISV-ELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242 V +LRPG +E L++ +SV + + E +PGM HYAP + L +H Sbjct: 204 PPV-VLRPGPFTVEELEKLFGPVSVPPVARGLAEADVALAPGMKYRHYAPDTV--LVIVH 260 Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSKTGK-------------LKEAAFNLFNYMKIA 289 + EA+ + + ++ A+ L TGK L E A NL+ ++ Sbjct: 261 FDLAEAV---QTLRARGLKVAV----LCATGKCAEANYVIQMGDDLYEVARNLYKSLRDL 313 Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAAAPR---NQSQ 326 D G +I G+G+AI NRL +A+ R N+ Q Sbjct: 314 DKLGVDIGVVPAIEERGVGLAIMNRLRKASGHREALNKEQ 353 >gi|312147861|gb|ADQ30520.1| Sua5/YciO/YrdC/YwlC family protein, putative [Borrelia burgdorferi JD1] Length = 337 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 107/339 (31%), Positives = 167/339 (49%), Gaps = 34/339 (10%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I S+ ++KA + + G + PTETVYG+ ++ N A++ ++ +KKRP NPLI HV Sbjct: 6 IISSSQIQKAAKLIKMGELVVFPTETVYGIGANAYNEDAVKMIFLVKKRPINNPLIVHVD 65 Query: 66 DISMVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 + +K+ + P S L L K F PGPLT VL + I + NL T R+P T Sbjct: 66 TVKKIKELSEYIPKSALMLIKKFSPGPLTYVLK--KSIKISRFVSGNLDTVAIRIPANKT 123 Query: 125 K-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS-------KIGL 176 LI+ P+ PSAN S + S TN + L KE+ ++ G I IG+ Sbjct: 124 ALSLIKASKVPIVAPSANISKRPSSTNFEMAL-----KELNGLVRGIIKPEENKDFNIGI 178 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELE--YCVDETST----PQSPGMLKSHY 230 EST+V + V ILRPG + K+ I EL+ Y V+ T +SPG HY Sbjct: 179 ESTVVGFDLKDNVLILRPGAI----TKKMIENELQGKYTVNYAETKMELEKSPGNTIEHY 234 Query: 231 APRSQVRLRAIHVNPREALIRFGNVPIKN--IENAIISL-----NLSKTGKLKEAAFNLF 283 P+ V L N R L + + I +++ + + N++ L+E A NL+ Sbjct: 235 KPKIPVYLFKSQDNIRRYLNKDTKILITKATLKSYLFNFFWNKKNITVFNTLEEYAQNLY 294 Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 + + ++ I + + LG +INNR+++A++ R Sbjct: 295 KEL-VNSENNYKQILSEFLKDEELGHSINNRIKKASSNR 332 >gi|306820802|ref|ZP_07454427.1| Sua5/YciO/YrdC/YwlC family protein [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551192|gb|EFM39158.1| Sua5/YciO/YrdC/YwlC family protein [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 341 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 83/252 (32%), Positives = 142/252 (56%), Gaps = 14/252 (5%) Query: 2 QIMSITDSN---ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58 +++ + D N A+ A E + G + PTETVYG+ ++ + + +++Y K RP+ N Sbjct: 4 EVIKLNDENYDYAINLASEHIRRGNIVIFPTETVYGIGANALDEESSKKIYMAKGRPSDN 63 Query: 59 PLICHVSDISMVKK-HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTAC 116 PLI H+ ++ + K +D + + FWPGPLT++++ ++I P T L T Sbjct: 64 PLIVHIENMDDLNKISKKIDERTKKIIDCFWPGPLTIIVE---KSEIVPSCITGGLNTVA 120 Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R+P + +I+ G P+A PSAN SG+ SIT+ K + K + LI+ ++IG Sbjct: 121 VRMPSNKIARDIIKKSGIPIAAPSANISGRPSITSEKFVTDEFFGK-VDLILLNESTEIG 179 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV---DETSTPQSPGMLKSHYAP 232 +EST+++V E V ILRPG + L+ ++ ++ + + DET P+SPGM HYAP Sbjct: 180 IESTVIDVTGENIV-ILRPGFITKNDLENLLAEKIIFDLNISDETKAPKSPGMKYRHYAP 238 Query: 233 RSQVRLRAIHVN 244 + ++ L + +N Sbjct: 239 KCELYLMSGSIN 250 >gi|210623302|ref|ZP_03293719.1| hypothetical protein CLOHIR_01669 [Clostridium hiranonis DSM 13275] gi|210153703|gb|EEA84709.1| hypothetical protein CLOHIR_01669 [Clostridium hiranonis DSM 13275] Length = 348 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 104/341 (30%), Positives = 165/341 (48%), Gaps = 37/341 (10%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + +R+ E + G + PTETVYGL ++ + A++++Y K RP+ NPLI H++DI Sbjct: 14 DIDIIREMAEKIRNGETVIFPTETVYGLGANAMDEDAVKKIYLAKGRPSDNPLIVHIADI 73 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCG-FT 124 V K A V + + FWPGPLT++ L +I P +++ L T R+P Sbjct: 74 EEVDKIALEVGEKAKKAMENFWPGPLTII---LKKKEIVPNVTSGGLSTVAIRMPSNKIA 130 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 LI +A PSAN SG+ S T +H++ + + II GG GLEST+V+ Sbjct: 131 NALIRESKTQIAAPSANISGRPSPTKAEHVV-KEMSGRVSGIIMGGDCDFGLESTVVDFS 189 Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVD-------ETSTPQSPGMLKSHYAPRSQVR 237 +K + ILRPG + E L+ + E +D + ++PGM HY+P +QV Sbjct: 190 DDKPM-ILRPGSITKEMLEEVLG---EVSIDPSLSKKEDNIKAKAPGMKYKHYSPNAQVY 245 Query: 238 L----------------RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFN 281 + R H ++ I + + E + ++L K E A N Sbjct: 246 IVKGGENNVITKMNELSRKNHAENKKTGIMCMSKDVDKFECDYV-VDLGKD--YNEVAAN 302 Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 LF+ + D++ + + G+G AI NRL ++AA R Sbjct: 303 LFDALIKMDEAKMDIVYSVCFESCGVGQAIMNRLLKSAAYR 343 >gi|195941552|ref|ZP_03086934.1| hypothetical protein Bbur8_01541 [Borrelia burgdorferi 80a] Length = 337 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 107/339 (31%), Positives = 168/339 (49%), Gaps = 34/339 (10%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I S+ ++KA + + G + PTETVYG+ ++ N A++ ++ +KKRP NPLI HV Sbjct: 6 IISSSQIQKAAKLIKMGELVVFPTETVYGIGANAYNEDAVKMIFLVKKRPINNPLIVHVD 65 Query: 66 DISMVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 + +K+ + P S L L K F PGPLT VL + I + NL T R+P T Sbjct: 66 TVKKIKELSEYIPKSALILIKKFSPGPLTYVLK--KSIKISRFVSGNLDTVAIRIPANKT 123 Query: 125 K-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS-------KIGL 176 LI+ P+ PSAN S + S TN + L KE+ ++ G I IG+ Sbjct: 124 ALSLIKASKVPIVAPSANISKRPSSTNFEMAL-----KELNGLVRGIIKPEENKDFNIGI 178 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELE--YCVDETST----PQSPGMLKSHY 230 EST+V + V ILRPG + K+ I EL+ Y V+ T +SPG + HY Sbjct: 179 ESTVVGFDLKDNVLILRPGAI----TKKMIENELQGKYTVNYAETKMELEKSPGNIIEHY 234 Query: 231 APRSQVRLRAIHVNPREALIRFGNVPIKN--IENAIISL-----NLSKTGKLKEAAFNLF 283 P+ V L N R L + + I +++ + + N++ L+E A NL+ Sbjct: 235 KPKIPVYLFKSQDNIRRYLNKDTKILITKATLKSYLFNFFWNKKNIAVFNTLEEYAQNLY 294 Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 + + ++ I + + LG +INNR+++A++ R Sbjct: 295 KEL-VNSENNYKQILSEFLKDEELGHSINNRIKKASSNR 332 >gi|50302405|ref|XP_451137.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49640268|emb|CAH02725.1| KLLA0A03135p [Kluyveromyces lactis] Length = 404 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 110/364 (30%), Positives = 172/364 (47%), Gaps = 55/364 (15%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 T+ N L A D +A PTETVYGL + N +++ +Y+ K RP+ NPLI H+S Sbjct: 40 TEKNLLEAAGIIRDTSETVAFPTETVYGLGGSALNDESVKNIYKAKNRPSDNPLITHISS 99 Query: 67 ISMVKKHASVD------PLSLHLAKLF-------WPGPLTLVLDLLSTTD---IHPLSTA 110 +S + + D PLS H+ +++ WPGPLT++L + ++ + L+TA Sbjct: 100 LSQLNRVIYSDISDDCKPLS-HVPEIYHPLVEKLWPGPLTILLSIPDGSNRNTLSKLTTA 158 Query: 111 NLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169 N T R+P + LI P+A PSAN S + S T +H+ + IPLI+DG Sbjct: 159 NQPTFACRIPANPIARALIALSDTPIAAPSANASTRPSPTTAEHVF-HDLNGRIPLILDG 217 Query: 170 GISKIGLESTIVNVQCEKKVRILRPGGLEIET-------LKRAISVELEYCVDETSTPQS 222 G +G+EST+V+ + +LRPGG E L + VE + + + ++ Sbjct: 218 GKCSVGVESTVVDGLVTPPM-LLRPGGFTYENILNIGGPLWKECLVETKVNIKDDEKVKT 276 Query: 223 PGMLKSHYAPRSQVRLRAIHVNPR----EALIRFGNVPIKN------------------- 259 PGM HY+P+++V L + + E L R ++ K Sbjct: 277 PGMKYRHYSPKAKVILLVPEGDSQIISSERLGRLKSLVDKEIIQQGAKKVAFLNSLHLNK 336 Query: 260 --IENAIISLNLSKTGKLKEAAFNLFNYM-KIADDSGASSIAFSSIPNHGLGIAINNRLE 316 I+ I +L TG KE NLF + K+ ++ I + G+AI NRL Sbjct: 337 HFIDGKCIHESLGTTG--KEIQANLFALLRKVDEEDNVDLIVVEGTEANEEGLAIMNRLR 394 Query: 317 RAAA 320 +AA+ Sbjct: 395 KAAS 398 >gi|193215580|ref|YP_001996779.1| Sua5/YciO/YrdC/YwlC family protein [Chloroherpeton thalassium ATCC 35110] gi|193089057|gb|ACF14332.1| Sua5/YciO/YrdC/YwlC family protein [Chloroherpeton thalassium ATCC 35110] Length = 315 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 104/326 (31%), Positives = 168/326 (51%), Gaps = 23/326 (7%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 M+ + + ++A FL +A PTETVYGL + + A+ +++ +K RPA NPLI H Sbjct: 1 MTTKVTASTKEAARFLLKDELVAFPTETVYGLGANIFSEEAVHKIFRVKGRPAQNPLIAH 60 Query: 64 VSDIS----MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 +S+++ +VK+ V + L F+PGPLTLVL + + + T+ L T R+ Sbjct: 61 ISNLTELILLVKR---VTASAEKLIDAFFPGPLTLVLP--KSKYVPYVVTSGLDTIGVRM 115 Query: 120 PC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P + ++ G +A PSAN SG+ S T +++ + + I I+ GG S++GLES Sbjct: 116 PSHQVAQAFLKACGVSVAAPSANLSGRPSPTTWQNV-EADLDGLISCILKGGRSEVGLES 174 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAI-SVELEYCVDETSTPQSPGMLKSHYAPRSQVR 237 TIV+ + V +LR G + +E L+ +++L D+ + PG HYAP ++V Sbjct: 175 TIVDCTGKAPV-LLRAGAITLEQLQEITPAIKLAEISDDEPA-RCPGTKYKHYAPDAKVV 232 Query: 238 L----RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293 L IH P A I I+ E + SL ++E A LF++ + D Sbjct: 233 LIDAPSEIHPEPSSAYIG-----IEQPEASADSLITCSCVSIEEYAHQLFHFFRECDKKQ 287 Query: 294 ASSIAFSSIPNHGLGIAINNRLERAA 319 +I + GLG+A+ +RL RAA Sbjct: 288 VRTIFCQRVAKTGLGLALMDRLTRAA 313 >gi|302665561|ref|XP_003024390.1| hypothetical protein TRV_01457 [Trichophyton verrucosum HKI 0517] gi|291188442|gb|EFE43779.1| hypothetical protein TRV_01457 [Trichophyton verrucosum HKI 0517] Length = 445 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 97/291 (33%), Positives = 147/291 (50%), Gaps = 31/291 (10%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L A + +P+A PTETVYGL D+ A++ +Y+ K+RP+ NPLI HVS ++ Sbjct: 50 LEAAKAIRTSDIPVAFPTETVYGLGADATRSGAVQGIYKAKQRPSDNPLIVHVSSRDQLE 109 Query: 72 KHASVDP------LSLH-----------LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT 114 + VDP + H L + FWPGPL+++L S + P TANL T Sbjct: 110 RLL-VDPKQSNGAIKCHSTSPIPKIYEPLIERFWPGPLSIILPNPSHLPLAPEVTANLPT 168 Query: 115 ACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173 R+P + LI P+A PSAN S + S T +H+ + + I +I+DGG Sbjct: 169 FAARMPSSPLARLLIALADRPVAAPSANASTKPSPTTAQHVF-TDLQGRIEMILDGGPCG 227 Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS---VELEY---CVDETSTPQSPGMLK 227 +G+EST+V+ ILRPGG+ I+ L+ V++ Y + + P++PGM Sbjct: 228 VGVESTVVD-GLSSPPAILRPGGVGIDELRTCPGWEDVQIGYKDGALQGKTAPRAPGMKY 286 Query: 228 SHYAPRSQVRLRAIHVNPREALIR----FGNVPIKNIENAIISLNLSKTGK 274 HY+P+++V L NP + R P E+A I + +KT K Sbjct: 287 KHYSPKARVVLFEPGQNPASVMNRIIADINKQPEWANESAAIGVVRTKTWK 337 >gi|237653845|ref|YP_002890159.1| Sua5/YciO/YrdC/YwlC family protein [Thauera sp. MZ1T] gi|237625092|gb|ACR01782.1| Sua5/YciO/YrdC/YwlC family protein [Thauera sp. MZ1T] Length = 370 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 103/339 (30%), Positives = 159/339 (46%), Gaps = 52/339 (15%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL-SLHL 83 + +PTETVYGLA D+ +P A+++++ K RPA +PLI H+ + + + A+ P +L L Sbjct: 33 VGMPTETVYGLAADALDPEAVKKIFAAKGRPADHPLIVHLPSVEHLPQWAAAIPKDALAL 92 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142 A+ FWPGPLTL+L T D+ T T RVP L+ + LA PSANR Sbjct: 93 ARAFWPGPLTLILK--RTPDVPDEVTGGQDTVGVRVPAHPVALALLRAFDGGLAAPSANR 150 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202 G+IS T H+ + + + +I+DGG +G+ESTI++ + ILRPG + E + Sbjct: 151 FGRISPTTAAHV-HEELGERVAMILDGGACAVGIESTILDFSRDVP-EILRPGAITPEDI 208 Query: 203 KRAI---------------SVELEYCVDETS----------------TPQSPGMLKSHYA 231 R I S C D + P+ G L +HYA Sbjct: 209 ARVIGRRPRVPGESVAETASARAGQCGDASGLAEAAAPNAAADAAQPAPRVSGALAAHYA 268 Query: 232 PRSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLS--KTGKL-------KEAAF-- 280 PR+ +RL V P + + A+++ + S + +L AA+ Sbjct: 269 PRTPLRL----VEPALLADEAAALAGEGSRVAVLAHSTSDPRDARLSWRSLPADPAAYAQ 324 Query: 281 NLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 L+ ++ D GA I ++P A+ +RL RAA Sbjct: 325 GLYASLRALDGVGADLILIEALPGGPGWRAVADRLGRAA 363 >gi|269798157|ref|YP_003312057.1| Sua5/YciO/YrdC/YwlC family protein [Veillonella parvula DSM 2008] gi|269094786|gb|ACZ24777.1| Sua5/YciO/YrdC/YwlC family protein [Veillonella parvula DSM 2008] Length = 343 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 104/320 (32%), Positives = 164/320 (51%), Gaps = 33/320 (10%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-VDPLSLHL 83 ++IPTETVYGL + +P A+ ++Y K RP+ NPLI HV + +K + V + L Sbjct: 27 VSIPTETVYGLGANGLDPEAMDKIYTAKGRPSDNPLILHVPNSESIKPLVTEVSNTAQLL 86 Query: 84 AKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSAN 141 FWPGPLT+ L +D+ P +T L R P + L+E G P+A PSAN Sbjct: 87 MDTFWPGPLTIT---LPKSDLVPDRATGGLPRVALRCPDHELCRALLERAGVPIAAPSAN 143 Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIET 201 SG+ S T + + + I I+D G IG+EST+V V + KV ILRPGG+ Sbjct: 144 ISGRPSPTTAQDVY-HDMKDRISYILDAGSCTIGVESTVVEVH-DDKVIILRPGGITKAQ 201 Query: 202 LKRAISVELEY---CVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIK 258 L+ +S +EY V+ T+ P++PGM +HYAP + + + +P + F + + Sbjct: 202 LEDVVST-VEYDTALVNATTKPKAPGMKYTHYAPDAP--MTVVVGSPEDVASTFKELSAE 258 Query: 259 NIENAIISLNLSKTGKL--KEAAF--NLFNY----MKIADDSGASSIAFS---------- 300 +E I L +T L ++ F + F + + + D S + F+ Sbjct: 259 -VEGPIGCLVSHETYNLIKEDTRFICHCFGHHSDALSLGHDFYKSLLHFNENHVTLILAE 317 Query: 301 SIPNHGLGIAINNRLERAAA 320 + + G G+AI NR+E+A++ Sbjct: 318 GVDDDGFGVAIMNRMEKASS 337 >gi|326479423|gb|EGE03433.1| SUA5 [Trichophyton equinum CBS 127.97] Length = 445 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 87/253 (34%), Positives = 134/253 (52%), Gaps = 26/253 (10%) Query: 10 NALRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 AL +A E + ++ +P+A PTETVYGL D+ A++ +Y+ K+RP+ NPLI HVS Sbjct: 47 TALLEAAEAIRNSDIPVAFPTETVYGLGADATRSGAVQGIYKAKQRPSDNPLIVHVSSRD 106 Query: 69 MVKK-----HASVDPLSLH-----------LAKLFWPGPLTLVLDLLSTTDIHPLSTANL 112 +++ S P+ H L + FWPGPL+++L S + P TANL Sbjct: 107 QLERLLMDPKQSNGPIKCHSTSPIPKIYEPLIERFWPGPLSIILPNPSHRPLAPEVTANL 166 Query: 113 KTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171 T R+P + LI P+A PSAN S + S T +H+ + + I I+DGG Sbjct: 167 PTFAARMPSSPLARLLIALADRPVAAPSANASTKPSPTTAQHVF-TDLQGRIETILDGGP 225 Query: 172 SKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVE------LEYCVDETSTPQSPGM 225 +G+EST+V+ ILRPGG+ I+ L+ E + + + P++PGM Sbjct: 226 CGVGVESTVVDGLSSPPA-ILRPGGVGIDELRTCPGWEDVQTGYKDGALQGKTAPRAPGM 284 Query: 226 LKSHYAPRSQVRL 238 HY+P+++V L Sbjct: 285 KYKHYSPKARVVL 297 >gi|238917860|ref|YP_002931377.1| putative translation factor [Eubacterium eligens ATCC 27750] gi|238873220|gb|ACR72930.1| putative translation factor [Eubacterium eligens ATCC 27750] Length = 351 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 105/341 (30%), Positives = 161/341 (47%), Gaps = 34/341 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D +A + L G +A PTETVYGL D+ + A ++Y K RP+ NPLI H++D+ Sbjct: 14 DKKIYEQAGQILREGGLVAFPTETVYGLGADALDAKASAKIYAAKGRPSDNPLIVHIADV 73 Query: 68 SMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FT 124 + + A P +L LA+ FWPGPLT++ L D P S T L T R+P Sbjct: 74 NALYDLAKEVPDKALVLAEKFWPGPLTMI---LKKKDKVPDSITGGLGTVAIRMPSHPVA 130 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 +LI + G +A PSAN SG+ S T +H++ + + I +II IG+ESTI+++ Sbjct: 131 AELIRSSGVYIAAPSANTSGKPSPTRAEHVI-NDLSGRIDMIIQDDTVDIGVESTIIDL- 188 Query: 185 CEKKVRILRPGGLEIETLKRAISV-----ELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 E+ ILRPG + + AI + + E P++PGM HYAP + V Sbjct: 189 SEEVPTILRPGYITQAMFEEAIGKTIIDPAIMGSLKEGVVPKAPGMKYKHYAPNADV--- 245 Query: 240 AIHVNPREALIRFGNVPIKNIE---------------NAIISLNLSKTGKLKE---AAFN 281 I E ++++ N I E + I ++ G + A N Sbjct: 246 TIVEGQHEKVVQYINAQIAEKEAEGHRCAVMATDETKDKYICSDIVSAGHKDDELSVARN 305 Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 L+ ++ D + S +G A+ NRL +AA + Sbjct: 306 LYAILRDFDKQNIEFVYSESFETKNVGQAVMNRLIKAAGHK 346 >gi|78187540|ref|YP_375583.1| Sua5/YciO/YrdC/YwlC [Chlorobium luteolum DSM 273] gi|78167442|gb|ABB24540.1| translation factor SUA5 [Chlorobium luteolum DSM 273] Length = 315 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 106/319 (33%), Positives = 156/319 (48%), Gaps = 14/319 (4%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 ITDS +A L+AG +A PTETVYGL P A+ L+ K RP+ NPLI HVS Sbjct: 5 ITDSA--EEAARILNAGKIVAFPTETVYGLGAGIDFPEAVEGLFRAKGRPSDNPLIVHVS 62 Query: 66 DISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123 + V+ A+ V + L + F+PGPLT+V + + TA L+T R P Sbjct: 63 SVEQVEMAAARVTTDARRLMERFFPGPLTIVFP--KSPRVPHSVTAGLETVGIRCPRHPV 120 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 ++ + P+A PSANRSG+ S T + + + I I+ G S+IGLESTIV+ Sbjct: 121 AREFLSRCCCPVAAPSANRSGRPSATTWQAV-QEDLDGRIDAILKGEASRIGLESTIVDC 179 Query: 184 QCEKKVRILRPGGLEIETLKRAI-SVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242 V +LR G + +E L+ + S + E TP+SPG+ HYAP + + I Sbjct: 180 TGPHPV-MLRAGAVSLEELQSIVPSTTAARPLREGETPKSPGLKYPHYAPEATI----IP 234 Query: 243 VNPREALIRFGNVPIKNIENAIISLNL-SKTGKLKEAAFNLFNYMKIADDSGASSIAFSS 301 + E G A + + L+ A +LF++ + D S+I Sbjct: 235 IEKEETPSPEGRAAYIGTAPAPKGMAFVEQCPDLEAYARSLFHFFRECDRRAISTIYCEL 294 Query: 302 IPNHGLGIAINNRLERAAA 320 P G+G A+ +R+ RAA Sbjct: 295 PPTAGIGRALLDRINRAAG 313 >gi|326471329|gb|EGD95338.1| translation initiation protein Sua5 [Trichophyton tonsurans CBS 112818] Length = 445 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 87/253 (34%), Positives = 134/253 (52%), Gaps = 26/253 (10%) Query: 10 NALRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 AL +A E + ++ +P+A PTETVYGL D+ A++ +Y+ K+RP+ NPLI HVS Sbjct: 47 TALLEAAEAIRNSDIPVAFPTETVYGLGADATRSRAVQGIYKAKQRPSDNPLIVHVSSRD 106 Query: 69 MVKK-----HASVDPLSLH-----------LAKLFWPGPLTLVLDLLSTTDIHPLSTANL 112 +++ S P+ H L + FWPGPL+++L S + P TANL Sbjct: 107 QLERLLMDPKQSNGPIKCHSTSPIPKIYEPLIERFWPGPLSIILPNPSHRPLAPEVTANL 166 Query: 113 KTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171 T R+P + LI P+A PSAN S + S T +H+ + + I I+DGG Sbjct: 167 PTFAARMPSSPLARLLIALADRPVAAPSANASTKPSPTTAQHVF-TDLQGRIETILDGGP 225 Query: 172 SKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVE------LEYCVDETSTPQSPGM 225 +G+EST+V+ ILRPGG+ I+ L+ E + + + P++PGM Sbjct: 226 CGVGVESTVVDGLSSPPA-ILRPGGVGIDELRTCPGWEDVQTGYKDGALQGKTAPRAPGM 284 Query: 226 LKSHYAPRSQVRL 238 HY+P+++V L Sbjct: 285 KYKHYSPKARVVL 297 >gi|219684274|ref|ZP_03539218.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia garinii PBr] gi|219672263|gb|EED29316.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia garinii PBr] Length = 335 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 99/333 (29%), Positives = 162/333 (48%), Gaps = 26/333 (7%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I SN ++KA + + G + PTETVYG+ ++ N A++ ++ +KKR NPLI HV Sbjct: 6 IIRSNQIQKAAKLIKTGELVVFPTETVYGIGANAYNEDAVKMIFLVKKRSIQNPLIVHVD 65 Query: 66 DISMVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 + +K+ + P S L L K F PGPLT VL + I + NL T R+P Sbjct: 66 TVKKIKELSEYIPKSALMLIKRFSPGPLTYVLK--KSIKISRFVSGNLDTVAIRIPANKI 123 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS-------KIGL 176 LI+ P+A PSAN S + S TN + L KE+ ++ G I IG+ Sbjct: 124 ALNLIKASKVPIAAPSANISKRPSATNFEMAL-----KELNGLVRGIIKLEENKDFNIGI 178 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAIS--VELEYCVDETSTPQSPGMLKSHYAPRS 234 EST++ + V ILRPG + + +++ + + Y + +SPG + HY P+ Sbjct: 179 ESTVIGFDLKDNVIILRPGAITKKMIEKGLQGKYTVNYAETKIELEKSPGNMIEHYKPKI 238 Query: 235 QVRLRAIHVNPREALIRFGNVPIKN--IENAIISL-----NLSKTGKLKEAAFNLFNYMK 287 V L N R L + + I + + + + N++ L+E A NL+ + Sbjct: 239 PVYLFKNQDNIRRYLNKDTKILITKPTLNSYLFNFLWDKKNITVFNTLEEYAQNLYKEL- 297 Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + ++ I + + LG +INNR+ +A++ Sbjct: 298 VNSENSYKQILSEFVKDEELGYSINNRIRKASS 330 >gi|322435110|ref|YP_004217322.1| Sua5/YciO/YrdC/YwlC family protein [Acidobacterium sp. MP5ACTX9] gi|321162837|gb|ADW68542.1| Sua5/YciO/YrdC/YwlC family protein [Acidobacterium sp. MP5ACTX9] Length = 349 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 102/322 (31%), Positives = 161/322 (50%), Gaps = 32/322 (9%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP--LSLH 82 +A PTETVYGL ++ +PTA+ +++E K+RP+ +PLI H+++ M+ + A++D + Sbjct: 35 VAFPTETVYGLGANALDPTAVAKIFEAKQRPSWDPLIVHIANQQMLAEIATLDQQGTAAR 94 Query: 83 LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSAN 141 L FWPGPLTL+L T I TA+ R+P +LI G P+A PSAN Sbjct: 95 LIDAFWPGPLTLLLP--RTQAIPDAVTASRPLVGVRMPAHPVALELIRQTGLPIAAPSAN 152 Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIET 201 S T H+L+ + I I+DGG + +GLEST+ + + + + RPG + ++ Sbjct: 153 TFSHTSPTTAAHVLAD-LDGRIDAILDGGPTTVGLESTVAEITPDGLI-VYRPGAVTLDM 210 Query: 202 LKRAISVELEYC--VDETSTP----QSPGMLKSHYAPRSQVRL----------------R 239 L + + E S+P SPG+ HYAP+++V L Sbjct: 211 LNNLLGQGTAHLHIPPERSSPIESLPSPGVGIRHYAPKARVLLIDSPEDCAANWDLFIEN 270 Query: 240 AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF 299 V+ + L+ N P E+A I S + K + A LF+ ++ DD + I Sbjct: 271 LRQVDDKLGLMLPDNWPAP--EHASIFRWGSWSDK-ETLAHRLFSGLRALDDEHVTHIIC 327 Query: 300 SSIPNHGLGIAINNRLERAAAP 321 G+G AI +RL++AA P Sbjct: 328 PLPSPEGMGAAIRDRLQKAAKP 349 >gi|299067859|emb|CBJ39070.1| conserved protein of unknown function, translation factor domain, SUA5 type [Ralstonia solanacearum CMR15] Length = 336 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 101/321 (31%), Positives = 161/321 (50%), Gaps = 18/321 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +A L+AG +A PTETVYGL D+ NP AI R+Y +K RP+ +P+I HV D + + Sbjct: 16 LDEAARRLEAGELVAFPTETVYGLGADAENPQAIARIYALKGRPSNHPVIVHVVDGADLT 75 Query: 72 KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 A P ++L L + FWPGPLTL+L I + R P + L+ Sbjct: 76 YWADDVPGIALQLVEAFWPGPLTLILK--RAPHIPAAVAGGQDSVGLRCPSHPVAQALLS 133 Query: 130 TYGHP---LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV-QC 185 + +A PSAN+ GQ+S T +H+ + +++G +G+ESTIV++ + Sbjct: 134 RFKRGRGGIAAPSANKFGQVSPTTAQHVRDE--FGDAVFVLEGDGVDVGIESTIVDLSRL 191 Query: 186 EKKVR--ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVR-LRAIH 242 ++ V +LRPG + E + R V + + + P++ G L++HYAPR+ + L A Sbjct: 192 DQGVGPVLLRPGAITPEDIGRVTGVMP--SLPDAAAPRASGTLRAHYAPRTPLYLLAAAD 249 Query: 243 VNPREALIRFGN--VPIKNIENAIISLNLSKTGKLKEAAFN-LFNYMKIADDSGASSIAF 299 V R A + G V + + + A N L+ ++ D G +I Sbjct: 250 VPARLAALPAGQRIVWVGAPVDLPPGCDQHAAPATPAAYANTLYALLRELDRGGYHAIWL 309 Query: 300 SSIPNHGLGIAINNRLERAAA 320 ++P+ A+N+RL RAAA Sbjct: 310 ETLPDTSAWAAVNDRLRRAAA 330 >gi|168177474|ref|ZP_02612138.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum NCTC 2916] gi|226947365|ref|YP_002802456.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum A2 str. Kyoto] gi|182670936|gb|EDT82910.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum NCTC 2916] gi|226842540|gb|ACO85206.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum A2 str. Kyoto] Length = 351 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 103/338 (30%), Positives = 171/338 (50%), Gaps = 32/338 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + + +A + L G + PTETVYGL ++ + A++ ++E K RP NPLI H+S + Sbjct: 14 DEHVISEAGDILRQGGLVVFPTETVYGLGANALDKNAVKGIFEAKGRPQDNPLIVHISKM 73 Query: 68 SMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLST-ANLKTACFRVPCG-FT 124 ++K P ++ L FWPGP+T++ L DI P T A L + R+P Sbjct: 74 KDIEKLVQKIPSVAEKLMDKFWPGPMTII---LKKKDIIPNETSAGLDSIGIRMPSNKIA 130 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 KLI G P+A PSAN SG+ S T+V+ + + ++ +I+ G S++G+EST+++ Sbjct: 131 MKLISMAGVPIAAPSANLSGKPSPTDVETCI-EDLDGKVNIILGGDNSEVGVESTVIDCT 189 Query: 185 CEKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 ILRPGG+ +E LK I + D+ P++PGM HYAP++ +++ Sbjct: 190 INPPC-ILRPGGITLEMLKEVDSNIYIDPAIMKKPDKDLKPKAPGMKYRHYAPKAPLKII 248 Query: 240 AIHVNPR------------EALIRFGNVPI-KNIEN----AIISLNLSKTGKLKEAAFNL 282 +N +A + G + + I+N ++S+ K L A NL Sbjct: 249 KGDLNKTIEKINEMVQNYIDAEKKVGIIATDETIDNYRKGDVVSIGSRKD--LNTIAHNL 306 Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 F ++ D+ I + +G+AI NRL+++A Sbjct: 307 FYVLRSFDEKNVDLILSEAFEEKDMGVAIMNRLKKSAG 344 >gi|313903648|ref|ZP_07837038.1| Sua5/YciO/YrdC/YwlC family protein [Thermaerobacter subterraneus DSM 13965] gi|313466201|gb|EFR61725.1| Sua5/YciO/YrdC/YwlC family protein [Thermaerobacter subterraneus DSM 13965] Length = 493 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 79/199 (39%), Positives = 109/199 (54%), Gaps = 7/199 (3%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D A+R+A L G +A PTETVYGL D+ NP A+ R++ K RPA NPLI HV+ Sbjct: 76 DEAAVRRAGAILRQGGLVAFPTETVYGLGADALNPRAVARIFAAKGRPADNPLIVHVTGP 135 Query: 68 SMVKKH--ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124 AS LA+ FWPGPLTLVL + + + A L T R P Sbjct: 136 EQAGPELVASWPEAGRRLAERFWPGPLTLVLP--AGPAVPAVVRAGLPTVAVRCPAHPVA 193 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + LI G P+A PSANRSG+ S T + + + + + +++D G +G+EST+V+V Sbjct: 194 QALIAAAGTPVAAPSANRSGRPSPTRAEDVW-ADLGPHLDMLLDAGPVPVGVESTVVDVT 252 Query: 185 CEKKVRILRPGGLEIETLK 203 R+LRPGG+ E L+ Sbjct: 253 VWPP-RLLRPGGVPAEDLE 270 Score = 43.5 bits (101), Expect = 0.047, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 34/62 (54%) Query: 259 NIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERA 318 + + L+L + + A LF ++ AD GA+ + ++P HGLG A+ NRL +A Sbjct: 416 DFARGPVVLDLGSRHRPDQQARRLFRALRAADALGATRVLALAVPEHGLGRAVMNRLRKA 475 Query: 319 AA 320 AA Sbjct: 476 AA 477 >gi|48478016|ref|YP_023722.1| Sua5 superfamily-related protein [Picrophilus torridus DSM 9790] gi|48430664|gb|AAT43529.1| Sua5 superfamily-related protein [Picrophilus torridus DSM 9790] Length = 337 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 100/330 (30%), Positives = 158/330 (47%), Gaps = 30/330 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + ++ A + + G + PTETVYGL ++ + A +++ K RPA NPLI VS+ Sbjct: 8 DDSGIKIAADIIRKGGTVVFPTETVYGLGANALSSEASAKIFRAKDRPADNPLIVTVSNF 67 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCG-FTK 125 +MVK + +D L + + WP PLTL LL I P + TA + T C R P Sbjct: 68 NMVKDVSYIDCKLLKIMEGVWPAPLTL---LLKKKSIVPDIVTAGMDTVCVRFPKNEIAL 124 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +LI G P+A PSAN + + SI + K + + + IID G + G+ESTI++ Sbjct: 125 RLISEAGVPVAAPSANIATRPSIVDSKDAIDE-LDGRVDAIIDAGRVEYGVESTIIDATV 183 Query: 186 EKKVRILRPGGLEIETLKR---AISVE-LEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241 E +LRPG +E ++R I++ + E++ +PGM HYAP ++ L Sbjct: 184 EP-YNLLRPGAFPVEEIERLFGKININPVARGYKESNIALTPGMKYRHYAPSKKLILI-- 240 Query: 242 HVNPREALIRFGNVPIKNIENAIISLNLSKTGKL------------KEAAFNLFNYMKIA 289 E + F + + ++L S+ K EAA NLF ++ Sbjct: 241 -----ENIDDFRSFVSSDRARDFLALCSSENSKYVKYDKIILGRDAYEAAHNLFYDFRLL 295 Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAA 319 D S + P G+G + NR+ +A+ Sbjct: 296 DRSDKQYGVIQAFPETGIGFGLMNRIRKAS 325 >gi|28210066|ref|NP_781010.1| SUA5 protein [Clostridium tetani E88] gi|28202501|gb|AAO34947.1| SUA5 protein [Clostridium tetani E88] Length = 350 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 100/337 (29%), Positives = 169/337 (50%), Gaps = 31/337 (9%) Query: 9 SNALRKAC-EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 N + K C E L G + PTETVYGL ++ A+++++E K RP NPLI H+S++ Sbjct: 14 ENKILKECGEALRNGKLVVFPTETVYGLGANALKEDAVKKIFEAKGRPQDNPLIVHISEL 73 Query: 68 SMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + P ++ L + FWPGP+T++L ++ I ++ L + R+P + Sbjct: 74 EEIAPLVEEVPKIAYKLMEKFWPGPMTIILP--KSSLIPSRTSGGLNSVGIRMPSNEIAR 131 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 KLI+ P+A PSAN SG+ S TN++ + + ++ II G +G+EST+++ Sbjct: 132 KLIKEAKVPIAAPSANISGRPSPTNIETCI-EDLKGKVDYIIGGEKCDVGVESTVIDCTI 190 Query: 186 EKKVRILRPGGLEIETLKR-----AISVELEYCVDETSTPQSPGMLKSHYAPRSQVR-LR 239 +LRPGG+ +E LK I + ++ P++PGM HYAP+++++ +R Sbjct: 191 YPPC-VLRPGGITLEMLKNIDNKIYIDPAIMAGDNKDLKPKAPGMKYRHYAPKAELKIIR 249 Query: 240 AIHVNPREALIRF--------GNVPIK--------NIENAIISLNLSKTGKLKEAAFNLF 283 N + + + NV I + +ISL + L+ A NLF Sbjct: 250 GDLKNSVDKIKKLTDEYESQGKNVGIMATDETREFYVNGQVISLGGREN--LETIARNLF 307 Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + ++ D I + G+GIAI NRL+++A Sbjct: 308 SVLRSFDSKNVDIILSETFEEKGIGIAIMNRLKKSAG 344 >gi|219685554|ref|ZP_03540371.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia garinii Far04] gi|219672953|gb|EED29975.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia garinii Far04] Length = 335 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 99/333 (29%), Positives = 162/333 (48%), Gaps = 26/333 (7%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I SN ++KA + + G + PTETVYG+ ++ N A++ ++ +KKR NPLI HV Sbjct: 6 IIKSNQIQKAAKLIKTGELVVFPTETVYGIGANAYNEDAVKMIFLVKKRSIQNPLIVHVD 65 Query: 66 DISMVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 + +K+ + P S L L K F PGPLT VL + I + NL T R+P Sbjct: 66 TVKKIKELSEYIPKSALMLIKRFSPGPLTYVLK--KSIKISRFVSGNLDTVAIRIPANKI 123 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS-------KIGL 176 LI+ P+A PSAN S + S TN + L KE+ ++ G I IG+ Sbjct: 124 ALNLIKASKVPIAAPSANISKRPSATNFEMAL-----KELNGLVRGIIKLEENKDFNIGI 178 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAIS--VELEYCVDETSTPQSPGMLKSHYAPRS 234 EST++ + V ILRPG + + +++ + + Y + +SPG + HY P+ Sbjct: 179 ESTVIGFDLKDNVIILRPGAITKKMIEKGLQGKYTVNYAETKIELEKSPGNMIEHYKPKI 238 Query: 235 QVRLRAIHVNPREALIRFGNVPIKN--IENAIISL-----NLSKTGKLKEAAFNLFNYMK 287 V L N R+ L + + I + + + + N+ L+E A NL+ + Sbjct: 239 PVYLFKSQDNIRKYLNKDTKILITKPTLNSYLFNFLWDKKNIIVFNTLEEYAQNLYKEL- 297 Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + ++ I + + LG +INNR+ +A++ Sbjct: 298 VNSENSYKQILSEFVKDEELGYSINNRIRKASS 330 >gi|159040867|ref|YP_001540119.1| Sua5/YciO/YrdC/YwlC family protein [Caldivirga maquilingensis IC-167] gi|157919702|gb|ABW01129.1| Sua5/YciO/YrdC/YwlC family protein [Caldivirga maquilingensis IC-167] Length = 358 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 99/338 (29%), Positives = 157/338 (46%), Gaps = 31/338 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D +R A + + G +A PTETVYGL + N AIRR+Y +K RP NP I H+S Sbjct: 19 DMALIRIAADVILKGGLVAFPTETVYGLGASTYNDDAIRRIYAVKNRPMDNPSIVHISSF 78 Query: 68 SMVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126 + + + A P L K+ WPGPLT++L ++ I +++ L T R+P Sbjct: 79 NQLYEVAEDIPSELEERLKVAWPGPLTVILR--KSSRISEVASCGLSTVAVRMPAHPVAL 136 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 + P++ PSAN SG+ S T +H++ + +I LIIDGG + G+ESTI++ + Sbjct: 137 ALIRESTPISAPSANISGKPSPTRAEHVI-KDLWGKIDLIIDGGETFFGVESTIIDYTKK 195 Query: 187 KKVRILRPGGLEIETLKRAISV----ELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242 V + RPG +E L+R E + + +PGM HYAP L Sbjct: 196 PPV-LYRPGPFTVEELRRIFGEIKVPEQALGLGQFKEALAPGMKYRHYAPDKP--LIVTE 252 Query: 243 VNPREALIR----FGNVPIKNIENAII----------------SLNLSKTGKLKEAAFNL 282 + + L++ + +K + ++ + G L A NL Sbjct: 253 CSSLDGLVKLTLDLASDEVKRGKRVVVLCSSETCSTYVKAGFKVIEAGSRGNLYTVAKNL 312 Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 F+ +++ D P G+G+AI NRL +A+ Sbjct: 313 FHSLRLIDSMDVDLAVAEGYPEVGIGLAIMNRLRKASG 350 >gi|307298419|ref|ZP_07578222.1| Sua5/YciO/YrdC/YwlC family protein [Thermotogales bacterium mesG1.Ag.4.2] gi|306915584|gb|EFN45968.1| Sua5/YciO/YrdC/YwlC family protein [Thermotogales bacterium mesG1.Ag.4.2] Length = 345 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 114/342 (33%), Positives = 161/342 (47%), Gaps = 46/342 (13%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L+KA F+ G + PTETVYGL ++ + +AI ++Y K RP NPLI HVS Sbjct: 14 DEFRLKKAARFIRDGELVVFPTETVYGLGANALDESAISKIYHAKGRPQDNPLIVHVSSR 73 Query: 68 SMVKKHASVDPLSLH--LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 MV S + LS + L WPGP+TL+ I TA L T R P Sbjct: 74 EMVADLVSQN-LSEYSALMDTVWPGPVTLIFR--KRKRIPDSVTAGLDTVAIRFPSHPVA 130 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 KLIE P+A PSAN SG+ S T +H++ + + II G + GLESTI+++ Sbjct: 131 SKLIELSCVPVAAPSANLSGKPSPTREEHVV-EDMDGRVSCIILSGSTVFGLESTIIDLS 189 Query: 185 CEKKVRILRPGGLEIETLKRAI---------SVELEYCVDETSTPQSPGMLKSHYAPR-- 233 E+ V +LRPG ++ + LK + S +Y D P SPG+ HY+P Sbjct: 190 RERPV-LLRPGPIDPDQLKGVLPDLQIPGFASGREQYLGD----PLSPGLKYRHYSPDIP 244 Query: 234 ------------SQVRL----RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKE 277 S+V + ++ V E L + V +K + L L E Sbjct: 245 LILVEGELGLVVSKVGIIAGRKSSLVLCSEELRDYYPVQVKKV-------VLGSRSNLLE 297 Query: 278 AAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 A NLF ++ ++ S I P G+G+AI NRL +AA Sbjct: 298 VASNLFKELRDKENMSFSQIIAEPFPETGVGLAIMNRLRKAA 339 >gi|226292280|gb|EEH47700.1| translation initiation protein Sua5 [Paracoccidioides brasiliensis Pb18] Length = 544 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 88/265 (33%), Positives = 135/265 (50%), Gaps = 36/265 (13%) Query: 8 DSNALRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 ++ AL ++ E L + +P+A PTETVYGL D+ A++ +Y+ K+RPA NPLI HVS Sbjct: 112 EAKALLESAEALRMSDIPVAFPTETVYGLGADATRSAAVQGIYKAKQRPADNPLIVHVSS 171 Query: 67 ISMVKK----------HASVD----------------PLSLHLAKLFWPGPLTLVLDLLS 100 +++ H S D P+ L FWPGPLT++L + Sbjct: 172 REQLQRILRSHSSRPDHGSSDSRKTGNQEREETNLIPPIYEPLISKFWPGPLTIILPNPT 231 Query: 101 TTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSI 159 + + P T+ L T R+P + LI PLA PSAN S + S T +H+ + + Sbjct: 232 PSPLAPEVTSTLTTFGARMPSSPLARLLIHLTDRPLAAPSANASTKPSPTTAQHVF-TDM 290 Query: 160 CKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVE------LEYC 213 I +I+DGG +G+EST+V+ ILRPGG+ IE ++ E + Sbjct: 291 QGRIDIILDGGPCGVGVESTVVDGLLHPPA-ILRPGGIGIEEIRACPGWEDVRVGYKDGA 349 Query: 214 VDETSTPQSPGMLKSHYAPRSQVRL 238 + P++PGM HY+P+++V L Sbjct: 350 LQGKEAPRAPGMKYKHYSPKAKVVL 374 >gi|224824251|ref|ZP_03697359.1| Sua5/YciO/YrdC/YwlC family protein [Lutiella nitroferrum 2002] gi|224603670|gb|EEG09845.1| Sua5/YciO/YrdC/YwlC family protein [Lutiella nitroferrum 2002] Length = 320 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 97/324 (29%), Positives = 159/324 (49%), Gaps = 24/324 (7%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 T + +A L G +A+PTETVYGLA + +P AI +++ K RPA +PLI H+ D Sbjct: 6 THPEHIDRAARLLREGGLVALPTETVYGLAACAEDPQAIAKVFSAKGRPADHPLIVHLPD 65 Query: 67 ISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 ++ + + A P ++ LA+ FWPGPLTLVL + + PL T T R Sbjct: 66 LAHLTRWACRIPSVAFRLAEAFWPGPLTLVLP--AAPAVSPLITGGQDTIAVRWSAHPLF 123 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + +++ G + PSAN G IS T+ H+L + I ++DGG ++G+ESTI+++ Sbjct: 124 QAVLDQLGSAVVAPSANPFGHISPTSAAHVL-KHMEGRIDAVLDGGDCRVGVESTILDLS 182 Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPR---------SQ 235 + +ILRPG + L + + P+ PG L SHYAPR + Sbjct: 183 -GPEAKILRPGCIGASQLAAYLPLVER---PAAPAPRVPGALDSHYAPRLPCHRFEHDER 238 Query: 236 VRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 L + + A I F +P+ + ++ + + A ++ + A+ SG+ Sbjct: 239 AYLSQGVPSGKCAFIGFRELPMSTHRSYLLPADPAAY------ASQIYAVLHQAESSGSE 292 Query: 296 SIAFSSIPNHGLGIAINNRLERAA 319 SI P+ + + +RL RA+ Sbjct: 293 SILIEMPPDTPEWLHVRDRLLRAS 316 >gi|258517250|ref|YP_003193472.1| Sua5/YciO/YrdC/YwlC family protein [Desulfotomaculum acetoxidans DSM 771] gi|257780955|gb|ACV64849.1| Sua5/YciO/YrdC/YwlC family protein [Desulfotomaculum acetoxidans DSM 771] Length = 343 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 107/316 (33%), Positives = 145/316 (45%), Gaps = 32/316 (10%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-L 83 +A PTETVYGL ++ + A+RRL++ K RPA NPL HV+D+ + P H L Sbjct: 34 VAFPTETVYGLGANALDSRAVRRLFQAKARPADNPLTLHVADLKTAFAYLKDIPQEAHAL 93 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142 A FWPGPLTLVL T R+P LIE G PL PSAN Sbjct: 94 AGQFWPGPLTLVLPFQGHLPAE--VTGGRPALGVRMPDHPVALALIEQSGVPLVAPSANL 151 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202 SG+ S T H+L + I ++DGG S+ GLEST+++ EK V +LRPG L E L Sbjct: 152 SGRPSPTTADHVL-QDLSGRIEAVLDGGPSEWGLESTVIDFTGEKPV-LLRPGVLTQEDL 209 Query: 203 KRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKN--- 259 R + LE + P +HY P + L + R L + G + + Sbjct: 210 -RPFTGSLEL-----TNKAIPSAKYAHYTPHAAFLLVEGE-DDRVVLEKIGQMALHYEKQ 262 Query: 260 ---------------IENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPN 304 ++ I + SK+ + AA LF M+ D+ I + Sbjct: 263 GQKVGLLLYEEDAFLFQSYIYTTAGSKSRPVSVAA-GLFQAMRELDNRCVDIIICAGFHG 321 Query: 305 HGLGIAINNRLERAAA 320 GLG+AI NRL AA Sbjct: 322 QGLGLAIQNRLRLAAG 337 >gi|160937847|ref|ZP_02085206.1| hypothetical protein CLOBOL_02739 [Clostridium bolteae ATCC BAA-613] gi|158439286|gb|EDP17039.1| hypothetical protein CLOBOL_02739 [Clostridium bolteae ATCC BAA-613] Length = 412 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 87/237 (36%), Positives = 122/237 (51%), Gaps = 17/237 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++A L +G +A PTETVYGL ++ + A R++Y K RP+ NPLI HVS + V Sbjct: 19 LKEAASILRSGGLVAFPTETVYGLGGNALDEDAARKIYAAKGRPSDNPLIAHVSCVEEVA 78 Query: 72 KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 P L + FWPGPLT++ + + +T L T R+P +LI Sbjct: 79 PLVKEIPEAGRKLMEAFWPGPLTMIFP--KSEKVPYGTTGGLDTVAIRMPDDPVANRLIA 136 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G P+A PSAN SG+ S T H+ + I +IIDGG IG+ESTIV+V Sbjct: 137 LAGVPVAAPSANTSGRPSPTTADHVW-QDMNGRIEMIIDGGPVGIGVESTIVDVSSAVP- 194 Query: 190 RILRPGGLEIETLKRAISVELEYCVD--------ETSTPQSPGMLKSHYAPRSQVRL 238 +LRPG + +E L + E VD P++PGM HYAP++ + L Sbjct: 195 SVLRPGAITMEMLAEVLG---EVSVDPAILGPLSADVRPKAPGMKYKHYAPKADLTL 248 >gi|121608514|ref|YP_996321.1| Sua5/YciO/YrdC/YwlC family protein [Verminephrobacter eiseniae EF01-2] gi|121553154|gb|ABM57303.1| translation factor SUA5 [Verminephrobacter eiseniae EF01-2] Length = 348 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 103/331 (31%), Positives = 155/331 (46%), Gaps = 42/331 (12%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP-LSLHL 83 + +PTETVYGLA D+ N A+ +++ K RP +PLI HV+ + A P + L Sbjct: 24 LGLPTETVYGLAADAGNDAAVAQIFAAKGRPRDHPLIVHVASAEGIAHFARALPAFAQAL 83 Query: 84 AKLFWPGPLTLVLD--------LLSTTD-------IHPLSTANLKTACFRVPCGFTKKLI 128 A FWPGPLTL+L D HP++ A L+ P G T + Sbjct: 84 ADAFWPGPLTLILPRRPGVASAAAGGQDSVGLRCPAHPVAQALLRACAAPPPEGGTDQGH 143 Query: 129 ETYGHP---LAIPSANRSGQISITNVKHI---LSSSICKEIPLIIDGGISKIGLESTIVN 182 + G P LA PSANR G++S T +H+ L +++ L++DGG +G+ESTIV+ Sbjct: 144 DQGGPPIRGLAAPSANRFGRVSTTTAQHVQDELGAAL-----LVLDGGPCALGIESTIVD 198 Query: 183 VQCEKKVRI-LRPGGLEIETLKRAISVE-LEYCVDETSTPQSPGMLKSHYAPRSQVRL-- 238 C + + + LRPG + + A + L P++PG L +HYAPR++VRL Sbjct: 199 --CTRGLPVLLRPGSITRAQIAAACGIAPLSRAELPALDPRAPGTLAAHYAPRAKVRLMD 256 Query: 239 -RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKL--------KEAAFNLFNYMKIA 289 RA+ + A +L + G + A LF ++ Sbjct: 257 ARALQTSLDLWAASAPAATAPMAVYARSALRMPAPGPILRRMPDDASATAQQLFAVLRSL 316 Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 DD+G I + P + +RL+RAAA Sbjct: 317 DDAGVPLIWIETPPATPDWEGVRDRLQRAAA 347 >gi|152981358|ref|YP_001354532.1| hypothetical protein mma_2842 [Janthinobacterium sp. Marseille] gi|151281435|gb|ABR89845.1| Uncharacterized conserved protein, putative translation factor [Janthinobacterium sp. Marseille] Length = 340 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 104/333 (31%), Positives = 160/333 (48%), Gaps = 33/333 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D A+R A L+ G +A PTETVYGL D+ NP A+ +Y K RP+ +P+I H++ Sbjct: 7 DWPAIRDAARRLEQGELVAFPTETVYGLGADAENPAAVANIYAAKGRPSNHPVIVHLAPE 66 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVL-------DLLSTTDIHPLSTANLKTACFRV 119 + + A SV P + L +FWPGPLTL+L D +S + L+ V Sbjct: 67 ADLNYWAQSVSPDAQKLIAVFWPGPLTLILKRAVHIPDAVSGGQ----DSIGLRCPSHPV 122 Query: 120 PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHI---LSSSICKEIPLIIDGGISKIGL 176 + + G +A PSAN+ G +S T +H+ + I+DGG S++G+ Sbjct: 123 AQALLRAFKDGKGG-VAAPSANKFGHVSPTTAQHVHNEFGGDAGSLLTCILDGGQSEVGI 181 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQV 236 ESTIV++ V +LRPG + E + I L D+ + P++ G L+SHYAP + V Sbjct: 182 ESTIVDMSRGHAV-LLRPGHISAEQIAAVIGY-LPASPDQ-AAPRASGTLESHYAPLTPV 238 Query: 237 ----------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYM 286 L+ +++ R A + V + A ISL + A +L+ + Sbjct: 239 VLVDGEHLLAVLQKLNLRGRRAALMQYAVDAMPLVAASISLPDTPIAY----AHDLYAAL 294 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 + DD A I + P +N+RL RAA Sbjct: 295 RAMDDVHADVIVVQTPPTDVAWSGVNDRLRRAA 327 >gi|134095773|ref|YP_001100848.1| putative Sua5/YciO/YrdC/YwlC family protein [Herminiimonas arsenicoxydans] gi|133739676|emb|CAL62727.1| Conserved hypothetical protein, putative translation factor [Herminiimonas arsenicoxydans] Length = 339 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 103/335 (30%), Positives = 163/335 (48%), Gaps = 37/335 (11%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV--- 64 D A+ A L+ G +A PTETVYGL D+ NP A+ ++Y+ K RP+ +P+I H+ Sbjct: 6 DLTAIADAARRLERGELVAFPTETVYGLGADAENPLAVAKIYQAKGRPSNHPVIVHLAPE 65 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPLSTANLKTACFRVPC 121 +DI+ K V P + L FWPGPLTL+L + + T + L+ V Sbjct: 66 ADIAYWAK--DVSPEARQLIAAFWPGPLTLILKRANHIPDTVAGGQDSIGLRCPSHPVAQ 123 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPL---IIDGGISKIGLES 178 + + G +A PSAN+ G +S T +H+ + L ++DGG S++G+ES Sbjct: 124 ALLRNFKQGKGG-IAAPSANKFGHVSPTTAQHVRDEFVDDTNGLLTCVLDGGQSEVGIES 182 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQV-- 236 TIV++ + V +LRPG + + + V + + + P++ G L++HYAP + V Sbjct: 183 TIVDMSRGRAV-LLRPGHISAAQIGAVLGV--APLLPDAAAPRASGTLEAHYAPHTPVVL 239 Query: 237 --------RLRAIHVN-PREALIRF---GNVPIKNIENAIISLNLSKTGKLKEAAFNLFN 284 L+ +H + R AL+ VP A S+ L L A +L+ Sbjct: 240 LEREQMHEALQQLHAHGKRVALMHHSFTATVP------AAASIFLPAQPALY--AHDLYA 291 Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 ++ DD+ A I S P +N+RL RAA Sbjct: 292 ALRAMDDAHADVIMVESPPGDEAWNGVNDRLRRAA 326 >gi|153938602|ref|YP_001389505.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum F str. Langeland] gi|152934498|gb|ABS39996.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum F str. Langeland] gi|295317606|gb|ADF97983.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum F str. 230613] Length = 351 Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 103/341 (30%), Positives = 172/341 (50%), Gaps = 38/341 (11%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + + +A + L G + PTETVYGL ++ + A++ ++E K RP NPLI H+S I Sbjct: 14 DEHVISEAGDILRQGGLVVFPTETVYGLGANALDKNAVKGIFEAKGRPQDNPLIVHISKI 73 Query: 68 ----SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLST-ANLKTACFRVPCG 122 +VKK + P++ L FWPGP+T++ L DI P T A L + R+P Sbjct: 74 KDIDELVKK---IPPIAEKLMDKFWPGPMTII---LKKKDIIPNETSAGLDSIGIRMPSN 127 Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 +LI G P+A PSAN SG+ S T+++ + + + +I+ G S++G+EST++ Sbjct: 128 KIAMELISMAGVPIAAPSANLSGKPSPTDIETCI-EDLDGRVNMILGGDNSEVGVESTVI 186 Query: 182 NVQCEKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQV 236 + ILRPGG+ +E +K I + D+ P++PGM HYAP++ + Sbjct: 187 DCTINPPC-ILRPGGITLEMVKEVDSNIYIDPAIMKKPDKDLKPKAPGMKYRHYAPKAPL 245 Query: 237 RLRAIHVNPR------------EALIRFGNVPI-KNIEN----AIISLNLSKTGKLKEAA 279 ++ +N +A + G + + I+N ++S+ K L A Sbjct: 246 KIIKGDLNKTIEKINEMVQNYIDAEKKVGIIATDETIDNYKKGDVVSIGSRKD--LNTIA 303 Query: 280 FNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 NLF ++ D+ I + +G+AI NRL+++A Sbjct: 304 HNLFYVLRSFDEKNVDLILSEAFEEKDMGVAIMNRLKKSAG 344 >gi|317495537|ref|ZP_07953905.1| Sua5/YciO/YrdC/YwlC family protein [Gemella moribillum M424] gi|316914351|gb|EFV35829.1| Sua5/YciO/YrdC/YwlC family protein [Gemella moribillum M424] Length = 343 Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 106/345 (30%), Positives = 173/345 (50%), Gaps = 37/345 (10%) Query: 2 QIMSITDSNA----LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 +I++I+ SN K + IAIPTETVYGL+ D+ + A+ ++YE K RP+ Sbjct: 4 EIINISKSNNKEEIYNKLITYYKDNKLIAIPTETVYGLSADATSDEAVCKIYEAKGRPSD 63 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKT 114 NPLI H +++ + + VD + KL FWPGP+TL+L+ I +A L T Sbjct: 64 NPLIVHFYEMNQL--NDIVDYQDERVDKLIENFWPGPMTLILNAKENNGISKKVSAGLST 121 Query: 115 ACFRVPCGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173 R+P T +++++ LA PSAN SG+ S T +H+ + +I +II+ S Sbjct: 122 LAVRMPSNKTARQILKETKVLLAAPSANTSGKPSPTKFEHVY-HDLNGKIDVIIEDEQSD 180 Query: 174 IGLESTIVNVQCEKK-VRILRPGGLEIETLK-----RAISVELEYCVDETSTPQSPGMLK 227 IGLEST+++ C + + I RPG + E ++ ++ E VD T TP +PGM Sbjct: 181 IGLESTVID--CTRTPLVIARPGEITKEDIEGILGLGSVKYNDEVMVD-TQTPIAPGMKY 237 Query: 228 SHYAPRSQVRLRAIHVNPREALIRF--------GNVPIKNIENAIISLNLS------KTG 273 HY+P +++ + + E + F G + K+ E +LN+S Sbjct: 238 RHYSPEAEL---LYYEDSLEKALEFLKTKNKKTGFITYKSNEYLFENLNISVKYLADNEK 294 Query: 274 KLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERA 318 ++++ NL+N ++ D+ I I IA+ NRL +A Sbjct: 295 SVEQSNKNLYNILREFDEEKVEEIYILPIKETKENIALLNRLNKA 339 >gi|296135279|ref|YP_003642521.1| Sua5/YciO/YrdC/YwlC family protein [Thiomonas intermedia K12] gi|295795401|gb|ADG30191.1| Sua5/YciO/YrdC/YwlC family protein [Thiomonas intermedia K12] Length = 334 Score = 129 bits (323), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 101/315 (32%), Positives = 154/315 (48%), Gaps = 13/315 (4%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 +A L+AG + +PTETVYGLA D+ N A+ ++Y K RPA +P+I H+ + + Sbjct: 17 EAVRRLEAGELVGLPTETVYGLAADAENAQAVAKIYAAKGRPADHPVIVHIHRAADLGHW 76 Query: 74 ASVDPL-SLHLAKLFWPGPLTLVLDLL-STTDIHPLSTANLKTACFRVPCGFTKKLIETY 131 AS P + LA FWPGPLTL+L D + + C P I Sbjct: 77 ASDVPEPARKLAAAFWPGPLTLILPRKPGVADACAGGQSTIGLRCPSHPVAQAVLAIFKG 136 Query: 132 GH-PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G LA PSANR G+IS T H+ + + ++ L++DGG +G+ESTIV+ + R Sbjct: 137 GQGGLAAPSANRFGRISPTTAAHV-HAELGDDL-LVLDGGACAVGIESTIVDCTAQPP-R 193 Query: 191 ILRPGGLEIETLKRAISV-ELEYCVDETSTPQSPGMLKSHYAPRSQVRL-RAIHVNPR-- 246 ILRPG L+ + + + V E + S P+ G+L +HYAPR+ ++ +N R Sbjct: 194 ILRPGQLQAADIAQTLGVAEADLLRPAESAPRVAGVLPAHYAPRTPLQWCSREQINARWE 253 Query: 247 ---EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303 +A R G + A S ++ A L+ ++ D +G I +P Sbjct: 254 IDADAGRRIGVLAFPPQPRAPHSSWVTLPADPAAYAQQLYAVLRKLDAAGLEEICVEVLP 313 Query: 304 NHGLGIAINNRLERA 318 +A+ +RL RA Sbjct: 314 PSPAWLALRDRLTRA 328 >gi|315123100|ref|YP_004065106.1| putative translation factor [Pseudoalteromonas sp. SM9913] gi|315016860|gb|ADT70197.1| putative translation factor [Pseudoalteromonas sp. SM9913] Length = 335 Score = 129 bits (323), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 101/327 (30%), Positives = 164/327 (50%), Gaps = 33/327 (10%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A L AG +A+PTETVYGLA D+ N A+ +++ K RP +PLI H+ ++S V Sbjct: 16 INQAVALLKAGECVALPTETVYGLAADASNSDAVAKIFAAKGRPTNHPLIVHIPELSHVH 75 Query: 72 KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC--GFTKKLI 128 A +V+ ++ LA+ FWPGPLTL+L+ + +++ T L + RVP F ++ Sbjct: 76 HWAKNVNKAAITLAEAFWPGPLTLILN--AKDNLNSPVTGGLNSIGLRVPAHPQFL-AVL 132 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 + LA PSANR Q+S N H++ + I +++GG +G+ESTIV+ E + Sbjct: 133 KQLNTGLAAPSANRYKQLSPINTAHVM-RDLNGRISAVLEGGQCDVGIESTIVDATTE-Q 190 Query: 189 VRILRPGGLEIETL--KRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246 +RILRPG + + K ++V +E PG +K+HY P + AI +N Sbjct: 191 LRILRPGPISAADILQKTGLNVTTPLSHNEA----VPGNVKAHYQPHAP----AILINSA 242 Query: 247 EALIRFGNVP---------IKNIENAIISLNLSKTGKLK------EAAFNLFNYMKIADD 291 + N P E +++ ++S K E A N++ + D+ Sbjct: 243 DFPSVLSNTPHLQTHYLIYSTKAEQQLLANHISPQYITKLSACPVEYAKNMYKTLHHIDE 302 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERA 318 + +I P A+N+RL RA Sbjct: 303 TTPMNIYIEKPPVSSKWGAVNDRLSRA 329 >gi|330684783|gb|EGG96476.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis VCU121] Length = 347 Score = 129 bits (323), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 82/223 (36%), Positives = 124/223 (55%), Gaps = 7/223 (3%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-VD 77 L+ GL +A+PTETVYGL D+ N A+ ++YE K RP+ NPLI H+ D+S + V+ Sbjct: 29 LNGGL-VALPTETVYGLGADATNQEAVSQIYEAKGRPSDNPLIVHIHDMSQMNDFIDKVE 87 Query: 78 PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136 P L + FWPGP++ +L L S + P T L + R+P + +++ P+A Sbjct: 88 PRVQQLMETFWPGPISFILPLKSGY-LCPKVTGGLNSIAVRMPSHPIGRGVLQQIDKPIA 146 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SG+ S T +H+ + I II+G S+ GLEST+++ + RI RPG Sbjct: 147 APSANISGRPSPTTFEHVY-QDLNGRIDGIINGDQSEEGLESTVLDC-TQYPFRIARPGS 204 Query: 197 LEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRL 238 + L+ I +E +E S P +PGM HY+P + V + Sbjct: 205 ITKMMLENVIPNCIESSNYNEASQPIAPGMKYKHYSPDTPVTI 247 >gi|312897941|ref|ZP_07757354.1| Sua5/YciO/YrdC/YwlC family protein [Megasphaera micronuciformis F0359] gi|310620975|gb|EFQ04522.1| Sua5/YciO/YrdC/YwlC family protein [Megasphaera micronuciformis F0359] Length = 350 Score = 129 bits (323), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 104/333 (31%), Positives = 156/333 (46%), Gaps = 25/333 (7%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D N L +A + G + PTETVYG+ + + A R +Y K RP+ NPLI V D Sbjct: 15 DKNVLEEAGRLIRQGELVIFPTETVYGIGANGLDAAACRAIYTAKGRPSDNPLILTVPDK 74 Query: 68 SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTK 125 + V+ S + PL+ L + FWPGPLTLVL T + +T L T R P + Sbjct: 75 AGVEAVVSYLPPLAETLIEKFWPGPLTLVLPRKDT--VPDAATGGLDTVALRCPDHAGCR 132 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 + ++ G P+A PSAN SG+ S T + + +I+DGG +G+ESTIV V Sbjct: 133 EFLKAAGVPVAGPSANLSGRPSPTTASEAF-HDMEGRVAMILDGGSCTVGVESTIVEV-L 190 Query: 186 EKKVRILRPGGLEIETLKR-AISVELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 + V +LRPG + E L A V + + V P++PGM HYAP + VR+ Sbjct: 191 DNVVTVLRPGAVTEEMLAEVAPYVTTDTHLVTGKGVPKAPGMKYRHYAPEAPVRVFVGSA 250 Query: 244 NPREALI------------RFGNVPIKN-IENAIISLN----LSKTGKLKEAAFNLFNYM 286 + + R G + + IE + ++ G E A L+ + Sbjct: 251 DQVSKAVGEVRTAAENDGKRLGYLLSREVIEKSEVTGKDVYCWGTHGNKTELAKELYRGL 310 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 D+ I + G+G A+ NR+++AA Sbjct: 311 LFFDEHPVDLIVAEGVETGGIGTAVMNRMKKAA 343 >gi|322804412|emb|CBZ01962.1| sua5 YciO YrdC YwlC family protein [Clostridium botulinum H04402 065] Length = 351 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 103/341 (30%), Positives = 172/341 (50%), Gaps = 38/341 (11%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + + +A + L G + PTETVYGL ++ + A++ ++E K RP NPLI H+S I Sbjct: 14 DEHVISEAGDILRQGGLVVFPTETVYGLGANALDKNAVKGIFEAKGRPQDNPLIVHISKI 73 Query: 68 ----SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLST-ANLKTACFRVPCG 122 +VKK + P++ L FWPGP+T++ L DI P T A L + R+P Sbjct: 74 KDIDELVKK---IPPIAEKLMDKFWPGPMTII---LKKKDIIPNETSAGLDSIGIRMPSN 127 Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 +LI G P+A PSAN SG+ S T+++ + + + +I+ G S++G+EST++ Sbjct: 128 KIAMELISMAGVPIAAPSANLSGKPSPTDIETCI-EDLDGRVNMILGGDNSEVGVESTVI 186 Query: 182 NVQCEKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQV 236 + ILRPGG+ +E +K I + D+ P++PGM HYAP++ + Sbjct: 187 DCTINPPC-ILRPGGITLEMVKEVDSNIYIDPAIMKKPDKDLKPKAPGMKYRHYAPKAPL 245 Query: 237 RLRAIHVNPR------------EALIRFGNVPI-KNIEN----AIISLNLSKTGKLKEAA 279 ++ +N +A + G + + I+N ++S+ K L A Sbjct: 246 KIIKGDLNKTIEKINEMVQNYIDAEKKVGIIATDETIDNYKKGDVVSIGSRKD--LNTIA 303 Query: 280 FNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 NLF ++ D+ I + +G+AI NRL+++A Sbjct: 304 HNLFYVLRSFDEKNVDLILSEAFEEKDIGVAIMNRLKKSAG 344 >gi|73668440|ref|YP_304455.1| translation factor SUA5 [Methanosarcina barkeri str. Fusaro] gi|72395602|gb|AAZ69875.1| translation factor SUA5 [Methanosarcina barkeri str. Fusaro] Length = 367 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 115/347 (33%), Positives = 165/347 (47%), Gaps = 43/347 (12%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + L +A + G +A PTETVYGL D NP A+ +++E KKRP NPL V Sbjct: 23 SVLERASAIIKRGGTVAFPTETVYGLGADGLNPEAVMKIFEAKKRPPGNPLSLLVHSRED 82 Query: 70 VKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCGFTK-K 126 V+K A P S L FWPGPLT++L+ DI P +++ LK+ R+P Sbjct: 83 VEKVARNIPESAFRLMNAFWPGPLTIILE---KNDIVPDITSGRLKSIGVRMPDHRVPLD 139 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LI+ G PLA PSAN SG+ S + H++ S + I I+DGG + IGLEST++++ E Sbjct: 140 LIKRAGTPLAAPSANLSGKPSPSLAAHVI-SDLTGRIDAILDGGEAAIGLESTVIDMTVE 198 Query: 187 KKVRILRPGGLEIETLKRAIS-VELEYCVDETS-----TPQSPGMLKSHYAPRSQVRL-R 239 V +LRPG + E L+ I V Y E + + G HY P ++V L Sbjct: 199 PPV-VLRPGAVSFEELESIIGKVRPGYKNGENGDKSDLSEKKAGQKYGHYIPDTKVVLVE 257 Query: 240 AIHVNPREALIRFGNVPIKNIENAIISLNLSKT----------------------GKLKE 277 + L++ + E A + L LS+ G +E Sbjct: 258 GEGKSVSGQLVKL--LESYRSEGAKVGLLLSEETSKETAPLLALKNLSPDECLLLGPREE 315 Query: 278 ---AAFNLFNYMKIADDSGASSI-AFSSIPNHGLGIAINNRLERAAA 320 AA LF +++ D G I A S + GLG A+ NRL A++ Sbjct: 316 PDVAARKLFEGLRMLDKKGLDVIVADGSFSHSGLGEALINRLREASS 362 >gi|323337544|gb|EGA78789.1| Sua5p [Saccharomyces cerevisiae Vin13] Length = 426 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 119/381 (31%), Positives = 181/381 (47%), Gaps = 67/381 (17%) Query: 5 SITD---SNALRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 +ITD AL +A + D +A PTETVYGL + N ++ +Y+ K RP+ NPL Sbjct: 42 TITDPETETALVEAARIIRDTDETVAFPTETVYGLGGSALNDNSVLSIYKAKNRPSDNPL 101 Query: 61 ICHVSDISMVKK------HASVDPLSLHLAKLF-------WPGPLTLVLDLLST--TDIH 105 I HVS I + + H S L ++ ++ WPGPLT++L + S+ + + Sbjct: 102 ITHVSSIDQLNRKVFNQPHLSGTSLFDNIPSIYRPLISSLWPGPLTILLPVPSSEHSALS 161 Query: 106 PLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP 164 L+TA+ T R+P + LI P+A PSAN S + S T H+ + +IP Sbjct: 162 KLTTADQPTFAVRIPANPVARALIALSDTPIAAPSANASTRPSPTLASHVY-HDLKDKIP 220 Query: 165 LIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKR-------AISVELEYCVDET 217 +I+DGG K+G+EST+V+ C + +LRPGG E + + VE + V++ Sbjct: 221 IILDGGACKVGVESTVVDGLCNPPM-LLRPGGFTYEXIVKLGGEAWSLCKVENKKTVEKG 279 Query: 218 STPQSPGMLKSHYAPRSQVRLRAIH---------VNPREALIRFGNVPIK---NIENAII 265 ++PGM HY+P ++V L H V+ E L R +K NI+ I Sbjct: 280 EKVRTPGMKYRHYSPSAKVVLLVPHCEGDGILKGVDRMERLKRLIETELKANRNIKKIAI 339 Query: 266 --SLNL----------------SKTGKL-------KEAAFNLFNYMKIADDSGASSIAF- 299 SL L SKT + +E NLF ++ D++ + F Sbjct: 340 LTSLKLRDSDLQSKIFNEPDFSSKTFIIERLGQSGEEIQTNLFAALRKVDENDKVDLIFV 399 Query: 300 SSIPNHGLGIAINNRLERAAA 320 I G G+A+ NRL +AAA Sbjct: 400 EGINEEGEGLAVMNRLRKAAA 420 >gi|167568960|ref|ZP_02361834.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia oklahomensis C6786] Length = 341 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 106/337 (31%), Positives = 159/337 (47%), Gaps = 46/337 (13%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 +A LDAG +A PTETVYGL D+++P A+ R+Y K RPA +P+I H++ S Sbjct: 15 EAAALLDAGELVAFPTETVYGLGGDAQSPAAVARIYAAKGRPANHPVIVHLAPGS--DPG 72 Query: 74 ASVDPLSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 VD L KL FWPGPLTL+L I + ++ R P + L+ Sbjct: 73 YWVDELPADAKKLIDAFWPGPLTLILK--RAAHIPDAVSGGQESVGLRCPSHPVAQALLR 130 Query: 130 TY-----GH-PLAIPSANRSGQISITNVKHI---LSSSICKEIPLIIDGGISKIGLESTI 180 + GH +A PSANR G +S T +H+ S+ ++DGG S +G+ESTI Sbjct: 131 AFDARRGGHGGVAAPSANRFGHVSPTTAQHVRDEFGDSVH-----VLDGGASDVGIESTI 185 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISV--ELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238 +++ +LRPG + + + + V L D T+ P++ G LK+HYAPR+ + L Sbjct: 186 LDL-SRGFPALLRPGRVTPQQIADVLGVAPRLPDGGDATA-PRASGTLKAHYAPRTPLAL 243 Query: 239 RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEA---------------AFNLF 283 P E L R + E + S+ G A L+ Sbjct: 244 -----APFERLERLLSAARDAGERIALVARASRAGAWAHTDGVHFVAAPEDPLVYARELY 298 Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ D + + I +P+ IA+N+RL RAAA Sbjct: 299 GLLRALDRAQVARILVEKLPDTAEWIAVNDRLGRAAA 335 >gi|151943645|gb|EDN61955.1| suppressor of upstream aug [Saccharomyces cerevisiae YJM789] gi|190407112|gb|EDV10379.1| protein SUA5 [Saccharomyces cerevisiae RM11-1a] gi|256272245|gb|EEU07236.1| Sua5p [Saccharomyces cerevisiae JAY291] Length = 426 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 119/381 (31%), Positives = 181/381 (47%), Gaps = 67/381 (17%) Query: 5 SITD---SNALRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 +ITD AL +A + D +A PTETVYGL + N ++ +Y+ K RP+ NPL Sbjct: 42 TITDPETETALVEAARIIRDTDETVAFPTETVYGLGGSALNDNSVLSIYKAKNRPSDNPL 101 Query: 61 ICHVSDISMVKK------HASVDPLSLHLAKLF-------WPGPLTLVLDLLST--TDIH 105 I HVS I + + H S L ++ ++ WPGPLT++L + S+ + + Sbjct: 102 ITHVSSIDQLNRKVFNQPHLSGTSLFDNIPSIYRPLISSLWPGPLTILLPVPSSEHSALS 161 Query: 106 PLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP 164 L+TA+ T R+P + LI P+A PSAN S + S T H+ + +IP Sbjct: 162 KLTTADQPTFAVRIPANPVARALIALSDTPIAAPSANASTRPSPTLASHVY-HDLKDKIP 220 Query: 165 LIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKR-------AISVELEYCVDET 217 +I+DGG K+G+EST+V+ C + +LRPGG E + + VE + V++ Sbjct: 221 IILDGGACKVGVESTVVDGLCNPPM-LLRPGGFTYEEIVKLGGEAWSLCKVENKKTVEKG 279 Query: 218 STPQSPGMLKSHYAPRSQVRLRAIH---------VNPREALIRFGNVPIK---NIENAII 265 ++PGM HY+P ++V L H V+ E L R +K NI+ I Sbjct: 280 EKVRTPGMKYRHYSPSAKVVLLVPHCEGDGILKGVDRMERLKRLIETELKANRNIKKIAI 339 Query: 266 --SLNL----------------SKTGKL-------KEAAFNLFNYMKIADDSGASSIAF- 299 SL L SKT + +E NLF ++ D++ + F Sbjct: 340 LTSLKLRDSDLQSKIFNEPDFSSKTFIIERLGQSGEEIQTNLFAALRKVDENDKVDLIFV 399 Query: 300 SSIPNHGLGIAINNRLERAAA 320 I G G+A+ NRL +AAA Sbjct: 400 EGINEEGEGLAVMNRLRKAAA 420 >gi|313893573|ref|ZP_07827142.1| Sua5/YciO/YrdC/YwlC family protein [Veillonella sp. oral taxon 158 str. F0412] gi|313441844|gb|EFR60267.1| Sua5/YciO/YrdC/YwlC family protein [Veillonella sp. oral taxon 158 str. F0412] Length = 343 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 105/320 (32%), Positives = 163/320 (50%), Gaps = 33/320 (10%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-VDPLSLHL 83 ++IPTETVYGL + +P A+ ++Y K RP+ NPLI HV + +K + V + L Sbjct: 27 VSIPTETVYGLGANGLDPEAMDKIYAAKGRPSDNPLILHVPNSESIKPLVTEVSSTAQAL 86 Query: 84 AKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSAN 141 FWPGPLT+ L +D+ P +T L R P + L++ G P+A PSAN Sbjct: 87 MDSFWPGPLTIT---LPKSDLVPDRATGGLPRVALRCPDHDGCRVLLQRAGVPIAAPSAN 143 Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIET 201 SG+ S T + + + + I I+D G IG+EST+V V + KV ILRPGG+ Sbjct: 144 ISGRPSPTTAQDVY-NDMNGRISYILDAGPCTIGVESTVVEVH-DDKVIILRPGGITKAQ 201 Query: 202 LKRAISVELEY---CVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIK 258 L+ +S +EY V + P++PGM +HYAP + + + V E++ N K Sbjct: 202 LETVVST-VEYDTALVGAETKPKAPGMKYTHYAPDAPM---TVVVGTPESVANTFNELSK 257 Query: 259 NIENAIISLNLSKTGKL--KEAAF--NLFNY----MKIADDSGASSIAFS---------- 300 IE I L +T +L ++ F + F + + + D S + F+ Sbjct: 258 GIEGPIGCLVSHETYELIKDDSRFMCHCFGHHGDALALGHDFYKSLLHFNENHVTLILAE 317 Query: 301 SIPNHGLGIAINNRLERAAA 320 + + G G+AI NR+E+A+ Sbjct: 318 GVNDDGFGVAIMNRMEKASG 337 >gi|253995512|ref|YP_003047576.1| Sua5/YciO/YrdC/YwlC family protein [Methylotenera mobilis JLW8] gi|253982191|gb|ACT47049.1| Sua5/YciO/YrdC/YwlC family protein [Methylotenera mobilis JLW8] Length = 323 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 101/331 (30%), Positives = 163/331 (49%), Gaps = 35/331 (10%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 +L +A L G +AIPTETVYGLA D+ N +A+++++ IK+RPA +PLI H+ +S V Sbjct: 4 SLEQAIAELKNGGVVAIPTETVYGLAADATNDSALKQIFAIKQRPADHPLIVHIGAMSQV 63 Query: 71 KKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + A+V P ++ LA FWPGPLTLVL + + + + T RVP L+ Sbjct: 64 QDWATVFPEVARDLASAFWPGPLTLVLP--AQPHVSRVVRGDEPTVALRVPNHPVALALL 121 Query: 129 ETYGHPLAIPSANRSGQISITNVKHI---LSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 G +A PSAN Q+S T H+ L +SI ++DGG ++G+ESTIV+V Sbjct: 122 TQGGLSVAAPSANLFTQLSPTTAAHVEAGLGASIS-----VLDGGACQVGIESTIVSVTA 176 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVD-----ETSTPQSPGMLKSHYAPRSQVRL-- 238 + + ++LRPG + + + + + P+ PG HY+PR+ + L Sbjct: 177 DGQWQLLRPGMISEQAIADVAARAASQPTQAVESVDAPVPKVPGQHALHYSPRTPLLLFK 236 Query: 239 -RAIHVNPRE---------ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKI 288 RA + E A + G+ + + + + K +L A + + MK+ Sbjct: 237 DRAALLQECELLKQAALSSAAMLIGDGTVPSCPYVQLPNSPEKVAELLYGALHHLDAMKV 296 Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 + PN + +A+ +RL RA Sbjct: 297 ------DRLLVELPPNLPIWMAVLDRLSRAG 321 >gi|289450238|ref|YP_003475652.1| Sua5/YciO/YrdC/YwlC family protein [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184785|gb|ADC91210.1| Sua5/YciO/YrdC/YwlC family protein [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 403 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 85/237 (35%), Positives = 130/237 (54%), Gaps = 31/237 (13%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI----SMVKKHASVDPLS 80 + +PTETVYGL V++ A+ +Y +K RP+ NPLI HV+D +V+K + PL+ Sbjct: 28 VVMPTETVYGLGVNALMGDAVPEVYRVKGRPSDNPLIVHVADFVDIPPLVQK---ISPLA 84 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKKLIETYGHPLAIP 138 + F PGPLT++ L +D+ PL + L T R+P LI+ G P+A P Sbjct: 85 DFIMHRFMPGPLTVI---LPKSDLIPLQVSGGLATVGIRMPSHPIAHALIKLAGVPVAAP 141 Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLE 198 SAN SG+ S+TN L + ++P I+DGG S +GLEST++++ + RILRPG ++ Sbjct: 142 SANLSGKPSLTNGPDCL-EELSGKVPFIVDGGASDVGLESTVLDLTSDMP-RILRPGKID 199 Query: 199 ---------------IETLKRAISVELEYC--VDETSTPQSPGMLKSHYAPRSQVRL 238 ++ + A V L Y + P +PGM HYAP+++VR+ Sbjct: 200 QAAVQAVCDEFKGKVMDGGQSAPMVSLGYLRRLAANEKPAAPGMKYRHYAPQAEVRI 256 >gi|219847348|ref|YP_002461781.1| Sua5/YciO/YrdC/YwlC family protein [Chloroflexus aggregans DSM 9485] gi|219541607|gb|ACL23345.1| Sua5/YciO/YrdC/YwlC family protein [Chloroflexus aggregans DSM 9485] Length = 345 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 88/242 (36%), Positives = 128/242 (52%), Gaps = 19/242 (7%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 T A+ A E L G +A PTETVYGL + + TA+ ++ K RP +PLI H++ Sbjct: 8 TSPQAIAVAAELLRRGELVAFPTETVYGLGGHALDQTAVAAIFAAKGRPTSDPLIVHLAT 67 Query: 67 ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP----LSTANLKTACFRVPC 121 + + + A + PL+ LA FWPGPLTL++ HP TA +T RVP Sbjct: 68 AADLPRVAVDIPPLATELATHFWPGPLTLIVPR------HPHVPRAVTAGRETVAVRVPS 121 Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L+ G P+A PSANR G S T H+L + + I IIDGG + IG+EST+ Sbjct: 122 HPVAHALLVAAGVPVAAPSANRFGHTSPTTADHVL-ADLDGRIAAIIDGGPTPIGIESTV 180 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQ----SPGMLKSHYAPRSQV 236 ++ +LRPGG+ +E L A++ ++ T+ + SPG+L HYAP ++ Sbjct: 181 LDCTTNPPT-LLRPGGISLEALT-AVAGPIQTYHRTTNKSETGFVSPGLLDRHYAPDHEL 238 Query: 237 RL 238 L Sbjct: 239 WL 240 >gi|71906092|ref|YP_283679.1| translation factor SUA5 [Dechloromonas aromatica RCB] gi|71845713|gb|AAZ45209.1| translation factor SUA5 [Dechloromonas aromatica RCB] Length = 331 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 112/348 (32%), Positives = 170/348 (48%), Gaps = 43/348 (12%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 MS T+++ ++A E L AG +A+PTETVYGL D+ NP A+ +++ K RPA +PLI H Sbjct: 1 MSPTEAD-YQRAVELLRAGELVAMPTETVYGLGADAANPAAVAKIFAAKGRPADHPLIVH 59 Query: 64 VSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 +S V + A P ++ L + FWPGPLT++L + T T RVP Sbjct: 60 LSGHDAVDRWAEQVPAVAWELMEAFWPGPLTVILK--KQAWVPDAVTGGQDTVGLRVPGH 117 Query: 123 ---------FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173 F E G +A PSANR G+IS T H+ + + + +I+DGG Sbjct: 118 PVALELLRRFAAATGEHAG--IAAPSANRFGRISPTTAAHV-AEELGDAVSMILDGGPCA 174 Query: 174 IGLESTIVNVQCEKKVRILRPGG---LEIET-LKRAISVELEYCVDETSTPQSPGMLKSH 229 +G+ESTIV+ + V +LRPG L +E L R ++E P+ G L++H Sbjct: 175 VGIESTIVDCSRGEPV-VLRPGHISPLHLEAILGRRPAIET-----AVGAPRVSGSLEAH 228 Query: 230 YAPRSQVRLRAIHVNPREALIRFGNVP-IKNIENAIISLNLSKTGKLKEA---------- 278 YAP + +R+ A E L+ F N + + A+IS N + A Sbjct: 229 YAPVTPLRMVA-----GERLLDFINAQRHRGGKCAVISANQPPQAGMPHAWRLMPADPVG 283 Query: 279 -AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325 A +++ ++ D +G I +IP A+ +RL RA A Q+ Sbjct: 284 YAHDIYAALRDMDHAGVDLIVVEAIPEDSAWAAVADRLRRAVAGAGQA 331 >gi|114332280|ref|YP_748502.1| Sua5/YciO/YrdC/YwlC family protein [Nitrosomonas eutropha C91] gi|114309294|gb|ABI60537.1| translation factor SUA5 [Nitrosomonas eutropha C91] Length = 341 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 88/222 (39%), Positives = 127/222 (57%), Gaps = 11/222 (4%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A L G IA PTETVYGL D +P AI+++++IK RP +PLI H + + ++ A Sbjct: 22 AVASLRKGNVIAFPTETVYGLGADISHPQAIQKIFDIKGRPPDHPLIVHFAKSAELEFWA 81 Query: 75 SVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKKLIETY 131 P + L LAK FWPGPLTLV L + PLS T T RVP +L+E Sbjct: 82 ENIPTTALMLAKHFWPGPLTLV---LPKSRHIPLSVTGGQDTVGLRVPSHPVALRLLEEL 138 Query: 132 G--HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G +A PSANR G +S T+ H+ I +I+DGG ++GLESTIV+ + +V Sbjct: 139 GGYKAIAAPSANRFGFVSPTSADHV-KKEFGDRIDIILDGGSCEVGLESTIVSC-IDNEV 196 Query: 190 RILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYA 231 ILRPGG+ + +++ + ++ + ++ ++PG L SHYA Sbjct: 197 AILRPGGISVLSIENVLKQKI-FVRSHGNSIRAPGSLTSHYA 237 >gi|259146341|emb|CAY79598.1| Sua5p [Saccharomyces cerevisiae EC1118] gi|323348688|gb|EGA82930.1| Sua5p [Saccharomyces cerevisiae Lalvin QA23] gi|323355058|gb|EGA86888.1| Sua5p [Saccharomyces cerevisiae VL3] Length = 417 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 119/381 (31%), Positives = 181/381 (47%), Gaps = 67/381 (17%) Query: 5 SITD---SNALRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 +ITD AL +A + D +A PTETVYGL + N ++ +Y+ K RP+ NPL Sbjct: 33 TITDPETETALVEAARIIRDTDETVAFPTETVYGLGGSALNDNSVLSIYKAKNRPSDNPL 92 Query: 61 ICHVSDISMVKK------HASVDPLSLHLAKLF-------WPGPLTLVLDLLST--TDIH 105 I HVS I + + H S L ++ ++ WPGPLT++L + S+ + + Sbjct: 93 ITHVSSIDQLNRKVFNQPHLSGTSLFDNIPSIYRPLISSLWPGPLTILLPVPSSEHSALS 152 Query: 106 PLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP 164 L+TA+ T R+P + LI P+A PSAN S + S T H+ + +IP Sbjct: 153 KLTTADQPTFAVRIPANPVARALIALSDTPIAAPSANASTRPSPTLASHVY-HDLKDKIP 211 Query: 165 LIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKR-------AISVELEYCVDET 217 +I+DGG K+G+EST+V+ C + +LRPGG E + + VE + V++ Sbjct: 212 IILDGGACKVGVESTVVDGLCNPPM-LLRPGGFTYEEIVKLGGEAWSLCKVENKKTVEKG 270 Query: 218 STPQSPGMLKSHYAPRSQVRLRAIH---------VNPREALIRFGNVPIK---NIENAII 265 ++PGM HY+P ++V L H V+ E L R +K NI+ I Sbjct: 271 EKVRTPGMKYRHYSPSAKVVLLVPHCEGDGILKGVDRMERLKRLIETELKANRNIKKIAI 330 Query: 266 --SLNL----------------SKTGKL-------KEAAFNLFNYMKIADDSGASSIAF- 299 SL L SKT + +E NLF ++ D++ + F Sbjct: 331 LTSLKLRDSDLQSKIFNEPDFSSKTFIIERLGQSGEEIQTNLFAALRKVDENDKVDLIFV 390 Query: 300 SSIPNHGLGIAINNRLERAAA 320 I G G+A+ NRL +AAA Sbjct: 391 EGINEEGEGLAVMNRLRKAAA 411 >gi|160903205|ref|YP_001568786.1| Sua5/YciO/YrdC/YwlC family protein [Petrotoga mobilis SJ95] gi|160360849|gb|ABX32463.1| Sua5/YciO/YrdC/YwlC family protein [Petrotoga mobilis SJ95] Length = 344 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 102/334 (30%), Positives = 161/334 (48%), Gaps = 29/334 (8%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 + +++A + + + PTETVYGL + + A+R+++E K RP NPLI HVS++ Sbjct: 14 EEEKIKEAAQAIKEDKTVVFPTETVYGLGANGLSENAVRKIFEAKGRPYDNPLILHVSNV 73 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCG-FTK 125 ++ + L + PGP+T V L ++ P + TA T R+P Sbjct: 74 RSFLEYTYISYALLEKIERLLPGPITFV---LKKREVVPDIVTAGKDTLAIRMPAHPVAL 130 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 KLIE P+A PSAN SG+ S T +H+L + K + II GG + G+ESTI+++ Sbjct: 131 KLIEYAEVPIAAPSANISGKPSPTMSEHVLKDMLGK-VDYIIIGGKVEFGVESTIIDLTQ 189 Query: 186 EKKVRILRPGGLEIETLKR----AISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241 K ILRPG + E LK I + Y E +SPGM HYAP + V L + Sbjct: 190 GKIPIILRPGPIPPEKLKEIFGDIIIPDFVYGKIEPDYIKSPGMKYRHYAPNTPVIL--V 247 Query: 242 HVNPREALIRFGNVPIKNIENAII-------------SLNLSKTG---KLKEAAFNLFNY 285 + +++ +K+ N ++ ++N G E A LF Sbjct: 248 EHDDANTMVKKVLEEVKSYNNPLVLCLKEHVGYYKDHNINFDTIGSESNYYEFAVKLFEM 307 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 ++ D+ ++ I + G+GIA+ NRL +AA Sbjct: 308 LRKYDEK-VDAMIIEGIEDKGIGIAVMNRLRKAA 340 >gi|53718441|ref|YP_107427.1| hypothetical protein BPSL0802 [Burkholderia pseudomallei K96243] gi|53725053|ref|YP_102128.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei ATCC 23344] gi|67641175|ref|ZP_00439959.1| Sua5/YciO/YrdC family protein [Burkholderia mallei GB8 horse 4] gi|121601543|ref|YP_991945.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei SAVP1] gi|124384353|ref|YP_001028391.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei NCTC 10229] gi|126449438|ref|YP_001079624.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei NCTC 10247] gi|126453889|ref|YP_001065126.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 1106a] gi|167002687|ref|ZP_02268477.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei PRL-20] gi|217419510|ref|ZP_03451016.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 576] gi|237811040|ref|YP_002895491.1| Sua5/YciO/YrdC family protein [Burkholderia pseudomallei MSHR346] gi|242314543|ref|ZP_04813559.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 1106b] gi|254176690|ref|ZP_04883347.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei ATCC 10399] gi|254181609|ref|ZP_04888206.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 1655] gi|254196617|ref|ZP_04903041.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei S13] gi|254203808|ref|ZP_04910168.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei FMH] gi|254208786|ref|ZP_04915134.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei JHU] gi|254360161|ref|ZP_04976431.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei 2002721280] gi|52208855|emb|CAH34794.1| conserved hypothetical protein [Burkholderia pseudomallei K96243] gi|52428476|gb|AAU49069.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei ATCC 23344] gi|121230353|gb|ABM52871.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei SAVP1] gi|124292373|gb|ABN01642.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei NCTC 10229] gi|126227531|gb|ABN91071.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 1106a] gi|126242308|gb|ABO05401.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei NCTC 10247] gi|147745320|gb|EDK52400.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei FMH] gi|147750662|gb|EDK57731.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei JHU] gi|148029401|gb|EDK87306.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei 2002721280] gi|160697731|gb|EDP87701.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei ATCC 10399] gi|169653360|gb|EDS86053.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei S13] gi|184212147|gb|EDU09190.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 1655] gi|217396814|gb|EEC36830.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 576] gi|237504349|gb|ACQ96667.1| Sua5/YciO/YrdC family protein [Burkholderia pseudomallei MSHR346] gi|238522048|gb|EEP85495.1| Sua5/YciO/YrdC family protein [Burkholderia mallei GB8 horse 4] gi|242137782|gb|EES24184.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 1106b] gi|243061678|gb|EES43864.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei PRL-20] Length = 341 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 103/335 (30%), Positives = 155/335 (46%), Gaps = 38/335 (11%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + A+ A LDAG +A PTETVYGL D++NP A+ R+Y K RPA +P+I H++ S Sbjct: 10 AEAIEDAAARLDAGELVAFPTETVYGLGADAQNPAAVARIYAAKGRPANHPVIVHLAPGS 69 Query: 69 MVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 P L FWPGPLTL+L T I + + R P + Sbjct: 70 DPGYWVEALPADAKKLIDAFWPGPLTLILK--RATHIPDAVSGGQDSVGLRCPSHPVAQA 127 Query: 127 LIETY-----GH-PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L+ + GH +A PSANR G +S T +H+ + ++DGG S +G+ESTI Sbjct: 128 LLRAFDARRGGHGGVAAPSANRFGHVSPTTAQHVRDE--FGDAVHVLDGGPSDVGIESTI 185 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISV--ELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238 +++ +LRPG + + + V L D T+ P++ G LK+HYAPR+ + L Sbjct: 186 LDL-SRGFPALLRPGHVSPRQIADVLGVAPRLPDGSDATA-PRASGTLKAHYAPRTPLAL 243 Query: 239 RAIH-VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAF---------------NL 282 A + P A R P+ + A S+ G AA L Sbjct: 244 AAFERLEPLLAAARDTGEPVALVARA------SRAGAWAHAAGVHFVAAPEDPAAYAREL 297 Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLER 317 + ++ D + + I +P+ A+N+RL R Sbjct: 298 YGLLRALDRAQVARILVEKLPDTAEWTAVNDRLGR 332 >gi|42521964|ref|NP_967344.1| putative translation factor related to Sua5 [Bdellovibrio bacteriovorus HD100] gi|39574494|emb|CAE77998.1| putative translation factor related to Sua5 [Bdellovibrio bacteriovorus HD100] Length = 338 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 95/293 (32%), Positives = 156/293 (53%), Gaps = 14/293 (4%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 ++ + AL KA L+ G I PTETVYGLA P+AI +++ K+RP +PLI HV+ Sbjct: 2 MSPNEALAKAKIILEEGGVIGFPTETVYGLAARIDIPSAIEKIFTTKERPFFDPLIVHVA 61 Query: 66 DISMVKK-HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 I KK A P S LA+ FWPGPLT+VL ++ + T+ L++ R+P Sbjct: 62 SIEQAKKVTAFWGPASQALAEAFWPGPLTMVLP--RDPSVNAMITSGLESVGIRMPNHPL 119 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 +L++ G PLA PSAN+ G+ S T+ H+ E ++DGG +IG+EST++ V Sbjct: 120 ALELLQQVGVPLAAPSANKFGRTSPTSASHV-RVEFKNENVFVVDGGDCEIGIESTVLLV 178 Query: 184 QCEKK---VRILRPGGLEIETLKRAISVE-LEY-CVDETSTPQSPGMLKSHYAPRSQVRL 238 + + + ILR G + L R + + L Y +++ +SPG +K HY P + + Sbjct: 179 RHRPEGVMLSILRRGHILKSDLARVLEEKGLAYEFIEQVDKRESPGHMKHHYMPPVPLVV 238 Query: 239 RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291 E++++ N I + + I S+ + K +A + + +K+++D Sbjct: 239 CLDPSRSPESVLKEVNEKIGELPDEIESIKIIKP----KAGIHSYEVLKLSED 287 >gi|76808623|ref|YP_332415.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 1710b] gi|126440362|ref|YP_001057891.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 668] gi|226199432|ref|ZP_03794990.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei Pakistan 9] gi|254187567|ref|ZP_04894079.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei Pasteur 52237] gi|254261671|ref|ZP_04952725.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 1710a] gi|76578076|gb|ABA47551.1| Sua5/YciO/YrdC/YwlC family protein, putative [Burkholderia pseudomallei 1710b] gi|126219855|gb|ABN83361.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 668] gi|157935247|gb|EDO90917.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei Pasteur 52237] gi|225928508|gb|EEH24537.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei Pakistan 9] gi|254220360|gb|EET09744.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 1710a] Length = 342 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 103/335 (30%), Positives = 155/335 (46%), Gaps = 38/335 (11%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + A+ A LDAG +A PTETVYGL D++NP A+ R+Y K RPA +P+I H++ S Sbjct: 11 AEAIEDAAARLDAGELVAFPTETVYGLGADAQNPAAVARIYAAKGRPANHPVIVHLAPGS 70 Query: 69 MVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 P L FWPGPLTL+L T I + + R P + Sbjct: 71 DPGYWVEALPADAKKLIDAFWPGPLTLILK--RATHIPDAVSGGQDSVGLRCPSHPVAQA 128 Query: 127 LIETY-----GH-PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L+ + GH +A PSANR G +S T +H+ + ++DGG S +G+ESTI Sbjct: 129 LLRAFDARRGGHGGVAAPSANRFGHVSPTTAQHVRDE--FGDAVHVLDGGPSDVGIESTI 186 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISV--ELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238 +++ +LRPG + + + V L D T+ P++ G LK+HYAPR+ + L Sbjct: 187 LDLSRGFPA-LLRPGHVSPRQIADVLGVAPRLPDGSDATA-PRASGTLKAHYAPRTPLAL 244 Query: 239 RAIH-VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAF---------------NL 282 A + P A R P+ + A S+ G AA L Sbjct: 245 AAFERLEPLLAAARDTGEPVALVARA------SRAGAWAHAAGVHFVAAPEDPAAYAREL 298 Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLER 317 + ++ D + + I +P+ A+N+RL R Sbjct: 299 YGLLRALDRAQVARILVEKLPDTAEWTAVNDRLGR 333 >gi|91785085|ref|YP_560291.1| translation factor SUA5 [Burkholderia xenovorans LB400] gi|91689039|gb|ABE32239.1| translation factor SUA5 [Burkholderia xenovorans LB400] Length = 346 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 104/346 (30%), Positives = 160/346 (46%), Gaps = 61/346 (17%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS---DIS 68 + A LDAG +A PTETVYGL D+ NP A+ R+Y K RPA +P+I H++ D + Sbjct: 19 IEHAAALLDAGELVAFPTETVYGLGGDAENPDAVARIYAAKGRPANHPVIVHLAPQGDPN 78 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 +H D + L FWPGPLTL+L I + + R P + L Sbjct: 79 YWVEHLPAD--AQRLIDAFWPGPLTLILK--RAARIPAAVSGGQDSVGLRCPSHPVAQAL 134 Query: 128 IETY-----GH-PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 +E + GH +A PSANR G +S T +H+ + ++DGG S +G+ESTI+ Sbjct: 135 LEAFSALRSGHGGVAAPSANRFGHVSPTTAQHVRDE--FGDTIHVLDGGASDVGIESTIL 192 Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVD--ETSTPQSPGMLKSHYAPRS----- 234 ++ +LRPG + + + + E D + + P++ G LK+HYAP + Sbjct: 193 DL-SRGFPALLRPGRVTPQDIADVLG-EAPRLPDGSDATAPRASGTLKAHYAPSTPLALL 250 Query: 235 -----QVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEA----------- 278 + L A HV+ R AL+ +S+ G +A Sbjct: 251 PFGALETLLAARHVDERVALV----------------ARVSRAGHWADAEGVHFVAAPED 294 Query: 279 ----AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 A L+ ++ D + + I +P+ IA+N+RL RAAA Sbjct: 295 PHVYARELYGLLRALDRANVTRILIEKLPDTIEWIAVNDRLGRAAA 340 >gi|148378148|ref|YP_001252689.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum A str. ATCC 3502] gi|153934330|ref|YP_001382549.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum A str. ATCC 19397] gi|153936453|ref|YP_001386101.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum A str. Hall] gi|148287632|emb|CAL81697.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC 3502] gi|152930374|gb|ABS35874.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum A str. ATCC 19397] gi|152932367|gb|ABS37866.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum A str. Hall] Length = 351 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 101/338 (29%), Positives = 171/338 (50%), Gaps = 32/338 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + + +A + L G + PTETVYGL ++ + A++ +++ K RP NPLI H+S + Sbjct: 14 DEHVISEAGDILRQGGLVVFPTETVYGLGANALDKNAVKGIFQAKGRPQDNPLIVHISKM 73 Query: 68 SMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLST-ANLKTACFRVPCG-FT 124 ++K P ++ L FWPGP+T++ L DI P T A L + R+P Sbjct: 74 KDIEKLVQKIPSVAEKLMDKFWPGPMTII---LKKKDIIPNETSAGLDSIGIRMPSNKIA 130 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 KLI G P+A PSAN SG+ S T+V+ + + ++ +I+ G S++G+EST+++ Sbjct: 131 MKLISMAGVPIAAPSANLSGKPSPTDVETCI-EDLDGKVNIILGGDNSEVGVESTVIDCT 189 Query: 185 CEKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 ILRPGG+ +E +K I + D+ P++PGM HYAP++ +++ Sbjct: 190 INPPC-ILRPGGITLEMVKEVDSNIYIDPAIMKKPDKDLKPKAPGMKYRHYAPKAPLKII 248 Query: 240 AIHVNPR------------EALIRFGNVPI-KNIEN----AIISLNLSKTGKLKEAAFNL 282 +N +A + G + + I+N ++S+ K L A NL Sbjct: 249 KGDLNKTIEKINEMVQNYIDAEKKVGIIATDETIDNYRKGDVVSIGSRKD--LNTIAHNL 306 Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 F ++ D+ I + +G+AI NRL+++A Sbjct: 307 FYVLRSFDEKNVDLILSEAFEEKDMGVAIMNRLKKSAG 344 >gi|207345471|gb|EDZ72286.1| YGL169Wp-like protein [Saccharomyces cerevisiae AWRI1631] Length = 426 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 119/381 (31%), Positives = 181/381 (47%), Gaps = 67/381 (17%) Query: 5 SITDSN---ALRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 +ITD AL +A + D +A PTETVYGL + N ++ +Y+ K RP+ NPL Sbjct: 42 TITDPETEAALVEAARIIRDTDETVAFPTETVYGLGGSALNDNSVLSIYKAKNRPSDNPL 101 Query: 61 ICHVSDISMVKK------HASVDPLSLHLAKLF-------WPGPLTLVLDLLST--TDIH 105 I HVS I + + H S L ++ ++ WPGPLT++L + S+ + + Sbjct: 102 ITHVSSIDQLNRKVFNQPHLSGTSLFDNIPSIYRPLISSLWPGPLTILLPVPSSEHSALS 161 Query: 106 PLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP 164 L+TA+ T R+P + LI P+A PSAN S + S T H+ + +IP Sbjct: 162 KLTTADQPTFAVRIPANPVARALIALSDTPIAAPSANASTRPSPTLASHVY-HDLKDKIP 220 Query: 165 LIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKR-------AISVELEYCVDET 217 +I+DGG K+G+EST+V+ C + +LRPGG E + + VE + V++ Sbjct: 221 IILDGGACKVGVESTVVDGLCNPPM-LLRPGGFTYEEIVKLGGEAWSLCKVENKKTVEKG 279 Query: 218 STPQSPGMLKSHYAPRSQVRLRAIH---------VNPREALIRFGNVPIK---NIENAII 265 ++PGM HY+P ++V L H V+ E L R +K NI+ I Sbjct: 280 EKVRTPGMKYRHYSPSAKVVLLVPHCEGDGILKGVDRMERLKRLIETELKANRNIKKIAI 339 Query: 266 --SLNL----------------SKTGKL-------KEAAFNLFNYMKIADDSGASSIAF- 299 SL L SKT + +E NLF ++ D++ + F Sbjct: 340 LTSLKLRDSDLQSKIFNEPDFSSKTFIIERLGQSGEEIQTNLFAALRKVDENDKVDLIFV 399 Query: 300 SSIPNHGLGIAINNRLERAAA 320 I G G+A+ NRL +AAA Sbjct: 400 EGINEEGEGLAVMNRLRKAAA 420 >gi|332531641|ref|ZP_08407538.1| Sua5/YciO/YrdC/YwlC family protein [Hylemonella gracilis ATCC 19624] gi|332039004|gb|EGI75433.1| Sua5/YciO/YrdC/YwlC family protein [Hylemonella gracilis ATCC 19624] Length = 351 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 110/367 (29%), Positives = 172/367 (46%), Gaps = 66/367 (17%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 I+ D +A+++A + L AG + +PTETVYGLA D+ + A+ ++Y K RPA +PLI Sbjct: 2 ILDGRDPSAVQRAAQALRAGELLGLPTETVYGLAADAGSDEAVAKIYAAKGRPAGHPLIV 61 Query: 63 HVSDISMVKKH-----ASVDPLSLHLAKLFWPGPLTLVLDLLSTTD-------------- 103 H++D S ++ A V + L + FWPGPLTL+L + Sbjct: 62 HLADESGAREGLAHFAAEVPAFARALMEAFWPGPLTLILPRRAGVAAAAAGGQHSIGLRC 121 Query: 104 -IHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKE 162 HP++ A L+ A + + G LA PSAN G++S T H+ + E Sbjct: 122 PAHPVAQAVLQAA----------RSLGVLG--LAAPSANLFGRVSPTTAAHVQAE--LGE 167 Query: 163 IPLIIDGGISKIGLESTIVNVQCEKKVRI-LRPGGL---EIETLKRAISVELEY-CVDET 217 LI+DGG ++G+ESTIV+ C + + LRPG + I+ + A ++ DE Sbjct: 168 GLLILDGGPCEVGIESTIVD--CTRGAPVLLRPGQITRVRIDEVLLAAGTDMRLRSADEV 225 Query: 218 ------STPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAI------- 264 + P++ GML+SHYAPR++VRL R + + + + Sbjct: 226 QARTAQAAPRASGMLESHYAPRAKVRLLDAVALQSALAARHSDAGAARLADEVQAPPVAV 285 Query: 265 ---ISLNLSKTGKLKE--------AAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINN 313 SL L G + AA LF ++ D++G I + P+ + + Sbjct: 286 YARTSLQL-PAGVVHRPMPVEAAVAAHELFAALRALDEAGVREIWVETPPDAPAWEGVMD 344 Query: 314 RLERAAA 320 RL RAAA Sbjct: 345 RLSRAAA 351 >gi|300705060|ref|YP_003746663.1| hypothetical protein RCFBP_20897 [Ralstonia solanacearum CFBP2957] gi|299072724|emb|CBJ44077.1| conserved protein of unknown function, translation factor domain, SUA5 type [Ralstonia solanacearum CFBP2957] Length = 336 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 100/325 (30%), Positives = 162/325 (49%), Gaps = 26/325 (8%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +A L+AG +A PTETVYGL D+ NP AI R+Y +K RP+ +P+I HV D + + Sbjct: 16 LDEAARRLEAGELVAFPTETVYGLGADAENPQAIARIYALKGRPSNHPVIVHVVDGADLT 75 Query: 72 KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 A P ++L L + FWPGPLTL+L I + R P + L+ Sbjct: 76 YWADDLPGIALQLVEAFWPGPLTLILK--RAPHIPAAVAGGQDSIGLRCPSHPVAQALLS 133 Query: 130 TYGHP---LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV-QC 185 + +A PSAN+ GQ+S T +H+ E +++G +G+ESTIV++ + Sbjct: 134 RFKRGRGGIAAPSANKFGQVSPTTAQHVREE--FGEAVFVLEGDGVDVGIESTIVDLSRL 191 Query: 186 EKKVR--ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 ++ + +LRPG + E ++R V + + + P++ G L++HYAPR+ + L A Sbjct: 192 DQGIGPVLLRPGAITPEDIERVTGVM--PSLPDAAAPRASGTLRAHYAPRTPLYLLAAAD 249 Query: 244 NPREALIRFGNVPI-KNIENAIISLNLSKTGKLKEAAFN-------LFNYMKIADDSGAS 295 P R +P + I ++L + A L+ ++ D G Sbjct: 250 VP----TRLAALPAGQRIVWVGAPVDLPSGCDQRAAPVTPAAYANALYALLRELDHGGYH 305 Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320 +I ++P+ A+N+RL RAAA Sbjct: 306 AIWVQTLPDTSAWAAVNDRLRRAAA 330 >gi|315050250|ref|XP_003174499.1| SUA5 protein [Arthroderma gypseum CBS 118893] gi|311339814|gb|EFQ99016.1| SUA5 protein [Arthroderma gypseum CBS 118893] Length = 441 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 88/254 (34%), Positives = 135/254 (53%), Gaps = 28/254 (11%) Query: 10 NALRKACEFLDAG-LPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 AL +A E + A +P+A PTETVYGL D+ A++ +Y+ K+RP+ NPLI HVS Sbjct: 47 TALIEAAEAIRASDIPVAFPTETVYGLGADATRSGAVQGIYKAKQRPSDNPLIVHVSSRD 106 Query: 69 MVKKHASVDPLSLH-----------------LAKLFWPGPLTLVLDLLSTTDIHPLSTAN 111 +++ VDP + L + FWPGPL+++L + P TAN Sbjct: 107 QLERLL-VDPKQSNGAIQSITTSPIPKIYEPLMERFWPGPLSIILPNPPHLPLAPEVTAN 165 Query: 112 LKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 L T R+P + LI P+A PSAN S + S T +H+ + + I +I+DGG Sbjct: 166 LPTFAARMPSSPLARLLIALSDKPVAAPSANASTKPSPTTAQHVF-TDLQGRIDMILDGG 224 Query: 171 ISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS---VELEY---CVDETSTPQSPG 224 +G+EST+V+ ILRPGG+ I+ L+ V++ Y + + P++PG Sbjct: 225 PCGVGIESTVVD-GLSSPPAILRPGGVGIDELRTCPGWEDVQIGYKDGALQGKTAPRAPG 283 Query: 225 MLKSHYAPRSQVRL 238 M HY+P+++V L Sbjct: 284 MKYKHYSPKARVIL 297 >gi|225563151|gb|EEH11430.1| translation initiation protein Sua5 [Ajellomyces capsulatus G186AR] Length = 490 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 85/260 (32%), Positives = 134/260 (51%), Gaps = 35/260 (13%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L A E + +P+A PTETVYGL D+ A++ +Y+ K+RP+ NPLI HVS ++ Sbjct: 62 LEAAEELRTSDIPVAFPTETVYGLGADATRSAAVQGIYKAKQRPSDNPLIVHVSSREQLQ 121 Query: 72 K----HAS----------------------VDPLSLHLAKLFWPGPLTLVLDLLSTTDIH 105 + H+S + P+ L FWPGPLT++L + + + Sbjct: 122 RLLQPHSSSPSQGGYGSRTEGSQQGGKRNFIPPIYEPLISKFWPGPLTIILPNPTPSPLA 181 Query: 106 PLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP 164 P T+ L+T R+P + LI PLA PSAN S + S T +H+ + + I Sbjct: 182 PEVTSTLRTFGVRMPSSPVARLLIYLADRPLAAPSANASTKPSPTTAQHVY-ADLQGRIN 240 Query: 165 LIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS---VELEY---CVDETS 218 +I+DGG +G+EST+V+ +LRPGG+ IE ++ V++ Y + Sbjct: 241 MILDGGPCGVGVESTVVDGLLYPPA-VLRPGGIGIEEIRACPGWEDVQIGYEDGALQGKE 299 Query: 219 TPQSPGMLKSHYAPRSQVRL 238 P++PGM HY+P+++V L Sbjct: 300 VPRAPGMKYKHYSPKAKVVL 319 >gi|170693448|ref|ZP_02884607.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia graminis C4D1M] gi|170141603|gb|EDT09772.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia graminis C4D1M] Length = 359 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 105/339 (30%), Positives = 161/339 (47%), Gaps = 47/339 (13%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS---DIS 68 + A LDAG +A PTETVYGL D+ NP A+ R+Y K RPA +P+I H++ D + Sbjct: 31 IEHAAALLDAGGLVAFPTETVYGLGGDAENPDAVARIYAAKGRPANHPVIVHLAPQGDPN 90 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 +H + + L FWPGPLTL+L I + + R P + L Sbjct: 91 YWVEHLPQE--AQRLIDAFWPGPLTLILK--RAARIPAAVSGGQDSVGLRCPSHPVAQAL 146 Query: 128 IETY-----GH-PLAIPSANRSGQISITNVKHI---LSSSICKEIPLIIDGGISKIGLES 178 +E + GH +A PSANR G +S T +H+ S+I ++DGG S +G+ES Sbjct: 147 LEAFSSLRAGHGGVAAPSANRFGHVSPTTAQHVRDEFGSAIH-----VLDGGASDVGIES 201 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD--ETSTPQSPGMLKSHYAPRSQV 236 TIV++ +LRPG + + + + E D + + P++ G LK+HYAPR+ + Sbjct: 202 TIVDL-SRGFPALLRPGRVTPQDIADVLG-EAPRLPDGSDATAPRASGTLKAHYAPRTPL 259 Query: 237 RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEA---------------AFN 281 L + N E L+ E + S+ G +A A Sbjct: 260 AL--LPFNALEPLL----AARAAGERVALVARASRAGHWADAEGVHFIAAPEDPHVYARE 313 Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 L+ ++ D + + I +P+ IA+N+RL RAAA Sbjct: 314 LYGLLRALDRANVARILIEKLPDTIEWIAVNDRLGRAAA 352 >gi|320040093|gb|EFW22027.1| translation initiation protein Sua5 [Coccidioides posadasii str. Silveira] Length = 461 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 82/239 (34%), Positives = 126/239 (52%), Gaps = 26/239 (10%) Query: 24 PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK----------- 72 P+A PTETVYGL D+ A++ +Y K+RP+ NPLI HVS +++ Sbjct: 69 PVAFPTETVYGLGADATRSAAVQGIYRAKQRPSDNPLIVHVSSREQLERLLRPPGCPTSN 128 Query: 73 ------HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125 + + P+ L + FWPGPLT+++ + + P T+NL T R+P + Sbjct: 129 QNSLQTSSLIPPIYEPLIERFWPGPLTILIPNPKHSPLAPEVTSNLSTFGVRMPSSSLAR 188 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LI+ PLA PSAN S + S T +H+ + + I +I+DGG +G+EST+V+ Sbjct: 189 LLIKLADRPLAAPSANASTKPSPTTAQHVY-ADLHGRIDIILDGGSCGVGVESTVVD-GL 246 Query: 186 EKKVRILRPGGLEIETLKRAISVE------LEYCVDETSTPQSPGMLKSHYAPRSQVRL 238 ILRPGG+ IE ++ E + + TP++PGM HY+PR++V L Sbjct: 247 NHPPAILRPGGVGIEEIRACRGWEDVRVGYKDGALPGKMTPRAPGMKYRHYSPRAKVVL 305 >gi|290559728|gb|EFD93053.1| Sua5/YciO/YrdC/YwlC family protein [Candidatus Parvarchaeum acidophilus ARMAN-5] Length = 358 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 108/355 (30%), Positives = 162/355 (45%), Gaps = 58/355 (16%) Query: 2 QIMSITDSNA----LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 +IM ++ N ++ A + G + PTETVYG+ D+ N A R ++ +K R A Sbjct: 11 EIMKMSKKNVDLEKIKLAAREIRGGKLVVFPTETVYGIGADAFNTKACRDIFRVKNRAAD 70 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 NPLI H+SD + VD + WP P+T +L D+ TA + T Sbjct: 71 NPLIVHISDFEQLDAITYVDGELREKIRRLWPNPITFILKRKKIPDV---VTAGMDTVAV 127 Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P LI P+A PSAN S S T KH + K + +IIDGG SK G+ Sbjct: 128 RMPNNRIALSLIRESHTPIAAPSANISTFPSATEAKHAIEDFNGK-VSVIIDGGRSKFGI 186 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYA 231 EST+++V K R+LRPG EI ++ I E+ V++ SPGM HY+ Sbjct: 187 ESTVIDV-SRKPYRLLRPGAFEIGDAEKVLGDIIIPKEVNKTVNKAKV-LSPGMKYRHYS 244 Query: 232 PRSQVRL------------RAIHVNPREALI----------RFGNVPIKNIENAI-ISLN 268 PR + L +H N + A+I + + + +IEN I IS N Sbjct: 245 PRKPLFLFENFRDMKAASDYLLHKNLKFAVISPEDYAHFFYKTRIITLGSIENPISISKN 304 Query: 269 LSKTGK---LKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 L ++ + ++E F L + M++ +A+ NRLE+AA Sbjct: 305 LFRSFRRLDIEEVDFGLISKMRL----------------KKFDLAVRNRLEKAAG 343 >gi|303312189|ref|XP_003066106.1| SUA5 protein, putative [Coccidioides posadasii C735 delta SOWgp] gi|240105768|gb|EER23961.1| SUA5 protein, putative [Coccidioides posadasii C735 delta SOWgp] Length = 461 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 82/239 (34%), Positives = 126/239 (52%), Gaps = 26/239 (10%) Query: 24 PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK----------- 72 P+A PTETVYGL D+ A++ +Y K+RP+ NPLI HVS +++ Sbjct: 69 PVAFPTETVYGLGADATRSAAVQGIYRAKQRPSDNPLIVHVSSREQLERLLRPPGCPTSN 128 Query: 73 ------HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125 + + P+ L + FWPGPLT+++ + + P T+NL T R+P + Sbjct: 129 QNSLQTSSLIPPIYEPLIERFWPGPLTILIPNPKHSPLAPEVTSNLSTFGVRMPSSSLAR 188 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LI+ PLA PSAN S + S T +H+ + + I +I+DGG +G+EST+V+ Sbjct: 189 LLIKLADRPLAAPSANASTKPSPTTAQHVY-ADLHGRIDIILDGGSCGVGVESTVVD-GL 246 Query: 186 EKKVRILRPGGLEIETLKRAISVE------LEYCVDETSTPQSPGMLKSHYAPRSQVRL 238 ILRPGG+ IE ++ E + + TP++PGM HY+PR++V L Sbjct: 247 NHPPAILRPGGVGIEEIRACRGWEDVRVGYKDGALPGKMTPRAPGMKYRHYSPRAKVVL 305 >gi|258574551|ref|XP_002541457.1| hypothetical protein UREG_00973 [Uncinocarpus reesii 1704] gi|237901723|gb|EEP76124.1| hypothetical protein UREG_00973 [Uncinocarpus reesii 1704] Length = 458 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 80/240 (33%), Positives = 127/240 (52%), Gaps = 26/240 (10%) Query: 23 LPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV-----------------S 65 +P+A PTETVYGL D+ A++ +Y+ K+RP+ NPLI HV S Sbjct: 68 VPVAFPTETVYGLGADATRSAAVQGIYKAKQRPSDNPLIVHVHSREQLEGLLQPPKCPKS 127 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFT 124 + + + + P+ L + FWPGPLT+++ + + P T+NL T R+P Sbjct: 128 QQTTAQSSSLIPPIYEPLIQRFWPGPLTILIPNPPHSPLAPEVTSNLSTFGVRMPSSSLA 187 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + LI PLA PSAN S + S T +H+ + + I +I+DGG +G+EST+V+ Sbjct: 188 RLLIRLADRPLAAPSANASTKPSPTTAQHVY-TDLRGRIDIILDGGPCGVGVESTVVDGL 246 Query: 185 CEKKVRILRPGGLEIETLKRAISVE------LEYCVDETSTPQSPGMLKSHYAPRSQVRL 238 + ILRPGG+ IE ++ E + + + P++PGM HY+P+++V L Sbjct: 247 SQPPA-ILRPGGVGIEEIRSCRGWEDVRIGYKDGALQGRTAPRAPGMKYRHYSPKAKVVL 305 >gi|134279501|ref|ZP_01766213.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 305] gi|134248701|gb|EBA48783.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 305] Length = 341 Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 103/335 (30%), Positives = 155/335 (46%), Gaps = 38/335 (11%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + A+ A LDAG +A PTETVYGL D++NP A+ R+Y K RPA +P+I H++ S Sbjct: 10 AEAIEDAAARLDAGELVAFPTETVYGLGADAQNPAAVARIYAAKGRPANHPVIVHLAPGS 69 Query: 69 MVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 P L FWPGPLTL+L T I + + R P + Sbjct: 70 DPGYWVEALPADAKKLIDAFWPGPLTLILK--RATHIPDAVSGGQDSVGLRCPSHPVAQA 127 Query: 127 LIETY-----GH-PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L+ + GH +A PSANR G +S T +H+ + ++DGG S +G+ESTI Sbjct: 128 LLRAFDARRGGHGGVAAPSANRFGHVSPTTGQHVRDE--FGDAVHVLDGGPSDVGIESTI 185 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISV--ELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238 +++ +LRPG + + + V L D T+ P++ G LK+HYAPR+ + L Sbjct: 186 LDL-SRGFPALLRPGHVSPRQIADVLGVAPRLPDGSDATA-PRASGTLKAHYAPRTPLAL 243 Query: 239 RAIH-VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAF---------------NL 282 A + P A R P+ + A S+ G AA L Sbjct: 244 AAFERLEPLLAAARDTGEPVALVARA------SRAGAWAHAAGVHFVAAPEDPAAYAREL 297 Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLER 317 + ++ D + + I +P+ A+N+RL R Sbjct: 298 YGLLRALDRAQVARILVEKLPDTAEWTAVNDRLGR 332 >gi|258539383|ref|YP_003173882.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus rhamnosus Lc 705] gi|257151059|emb|CAR90031.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus rhamnosus Lc 705] Length = 322 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 78/199 (39%), Positives = 116/199 (58%), Gaps = 11/199 (5%) Query: 45 IRRL---YEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLST 101 +RRL Y K RP+ NPLI V+D +MV ++A++ P + L FWPGPLT++L++L Sbjct: 22 LRRLVKVYAAKGRPSDNPLIVTVADAAMVSQYATITPDAAKLMDTFWPGPLTIILNILPG 81 Query: 102 TDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSIC 160 + T L+TA FR P T+KLI T G P+ PSAN SG+ S T H+L + Sbjct: 82 R-LSMKVTGGLQTAAFRNPDDALTRKLIATAGVPIVGPSANTSGKPSPTTADHVL-HDLA 139 Query: 161 KEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL---EIETLKRAISVELEYCVDET 217 +I ++D G +++G+ESTI+++ ILRPG + E+E L + + V + Sbjct: 140 DKIAGVLDDGPTRVGVESTIIDLTVTPPA-ILRPGAIGPHELEPLLGPVD-SAAHHVGKN 197 Query: 218 STPQSPGMLKSHYAPRSQV 236 P++PGM HYAP +QV Sbjct: 198 EAPKAPGMKYKHYAPAAQV 216 >gi|159111922|ref|XP_001706191.1| SUA5 protein [Giardia lamblia ATCC 50803] gi|157434285|gb|EDO78517.1| SUA5 protein [Giardia lamblia ATCC 50803] Length = 406 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 128/374 (34%), Positives = 181/374 (48%), Gaps = 64/374 (17%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +I+ T S L A L G +AIPTETVYGLA D+ + A +++ +K+RPA +PLI Sbjct: 41 RILGTTQSE-LADAAGALQRGELVAIPTETVYGLAADALSEAACAKIFTLKQRPANDPLI 99 Query: 62 CHVSDISMVKKHA--SVDPLSL--HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 H+S IS + A SV+ S+ LA FWPGPLT+VL + + + TA +T Sbjct: 100 VHISHISQLPMVAVVSVELSSIVDALAAAFWPGPLTMVLP--AAPCVPSIVTAGSQTIGV 157 Query: 118 RVP-----CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172 R+P C ++E PLA PSAN G IS T + + + + ++ LIIDGG Sbjct: 158 RMPRHPVACA----ILELAARPLAAPSANMFGSISPTQAEDVAAEFVNSDL-LIIDGGRC 212 Query: 173 KIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVE-LEYCVDE----------TSTPQ 221 IG+EST++ V+ + + ILR G + E L + L+Y E T Sbjct: 213 DIGIESTVLLVE-KDCLTILRRGQVNEEMLVATLPTNALDYIRVETRALSSSGLQTKAVS 271 Query: 222 SPGMLKSHYAPRSQVRL------------RAI------------HVNPR------EALIR 251 SPG HY+PR++ L RAI NP +AL+R Sbjct: 272 SPGQFLRHYSPRTECYLVMKGGPMLPGAVRAILPARLDGFVVILDCNPALAELEPDALLR 331 Query: 252 --FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI-AFSSIPNHGLG 308 G +P + E A I L L+ AA +LF ++ AD G + I A P GL Sbjct: 332 SLAGLLP-EGTEPARI-LRAYSVPTLEAAAQSLFETLRRADKLGPACILALPPEPARGLA 389 Query: 309 IAINNRLERAAAPR 322 A+ +RL RAA+ R Sbjct: 390 DALLDRLFRAASGR 403 >gi|6321269|ref|NP_011346.1| Sua5p [Saccharomyces cerevisiae S288c] gi|417826|sp|P32579|SUA5_YEAST RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein SUA5; AltName: Full=Suppressor of upstream AUG protein 5; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein SUA5 gi|4566|emb|CAA45598.1| SUA5 [Saccharomyces cerevisiae] gi|971384|emb|CAA59760.1| G1660 [Saccharomyces cerevisiae] gi|1322770|emb|CAA96881.1| SUA5 [Saccharomyces cerevisiae] gi|285812044|tpg|DAA07944.1| TPA: Sua5p [Saccharomyces cerevisiae S288c] Length = 426 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 119/381 (31%), Positives = 179/381 (46%), Gaps = 67/381 (17%) Query: 5 SITDSN---ALRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 +ITD AL +A + D +A PTETVYGL + N ++ +Y K RP+ NPL Sbjct: 42 TITDPETEAALVEAARIIRDTDETVAFPTETVYGLGGSALNDNSVLSIYRAKNRPSDNPL 101 Query: 61 ICHVSDISMVKK------HASVDPLSLHLAKLF-------WPGPLTLVLDLLST--TDIH 105 I HVS I + + H S L ++ ++ WPGPLT++L + S+ + + Sbjct: 102 ITHVSSIDQLNRKVFNQPHLSGTSLFDNIPSIYRPLISSLWPGPLTILLPVPSSEHSALS 161 Query: 106 PLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP 164 L+TA+ T R+P + LI P+A PSAN S + S T H+ + +IP Sbjct: 162 KLTTADQPTFAVRIPANPVARALIALSDTPIAAPSANASTRPSPTLASHVY-HDLKDKIP 220 Query: 165 LIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKR-------AISVELEYCVDET 217 +I+DGG K+G+EST+V+ C +LRPGG E + + VE + V++ Sbjct: 221 IILDGGACKVGVESTVVDGLCNPPT-LLRPGGFTYEEIVKLGGEAWSLCKVENKKTVEKG 279 Query: 218 STPQSPGMLKSHYAPRSQVRLRAIH---------VNPREALIRFGNVPIK---NIENAII 265 ++PGM HY+P ++V L H V+ E L R +K NI+ I Sbjct: 280 EKVRTPGMKYRHYSPSAKVVLLVPHCEGDGILKGVDRMERLKRLIETELKANSNIKKIAI 339 Query: 266 --SLNL----------------SKTGKL-------KEAAFNLFNYMKIADDSGASSIAF- 299 SL L SKT + +E NLF ++ D++ + F Sbjct: 340 LTSLKLRDSDLQSKIFNEPDFSSKTFIIERLGQSGEEIQTNLFAALRKVDENDKVDLIFV 399 Query: 300 SSIPNHGLGIAINNRLERAAA 320 I G G+A+ NRL +AAA Sbjct: 400 EGINEEGEGLAVMNRLRKAAA 420 >gi|239637409|ref|ZP_04678391.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus warneri L37603] gi|239597009|gb|EEQ79524.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus warneri L37603] Length = 347 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 82/227 (36%), Positives = 125/227 (55%), Gaps = 15/227 (6%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVD 77 L+ GL +A+PTETVYGL D+ N A+ +YE K RP+ NPLI H+ D+S + +++ Sbjct: 29 LNGGL-VALPTETVYGLGADATNQEAVSHIYEAKGRPSDNPLIVHIHDMSQMNDFVDTLE 87 Query: 78 PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136 P L + FWPGP++ +L L S + P T L + R+P + +++ P+A Sbjct: 88 PKVQSLMEAFWPGPISFILPLKSGY-LCPKVTGGLNSIAVRMPSHPIGRSVLQHIDKPIA 146 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SG+ S T +H+ + I II+G S+ GLEST+++ + RI RPG Sbjct: 147 APSANISGRPSPTTFEHVF-QDLNGRIDGIINGDQSEEGLESTVLDC-TQYPFRIARPGS 204 Query: 197 LEIETLKRAISVELEYCVD-----ETSTPQSPGMLKSHYAPRSQVRL 238 + K+ I L C++ E S P +PGM HY+P + V + Sbjct: 205 I----TKKMIENVLPNCIEASNYNEASQPIAPGMKYKHYSPDTPVTI 247 >gi|328851428|gb|EGG00583.1| hypothetical protein MELLADRAFT_111724 [Melampsora larici-populina 98AG31] Length = 484 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 113/389 (29%), Positives = 174/389 (44%), Gaps = 75/389 (19%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 ++ +++AL+ A + +A PTETVYGL + + A+ ++Y K RPA NPLI H Sbjct: 84 ITFANASALQTASILIQNNELVAFPTETVYGLGACATSNIAVSKIYRTKGRPADNPLIVH 143 Query: 64 VSDISMVKKHASVD---PLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLS------TANLK 113 VS + M++ D PLS L FWPGPLT ++ +S+ P+S T LK Sbjct: 144 VSSLHMLQSLLPSDWVLPLSYQILIDEFWPGPLTFLVPTISSE--QPISKIPDKVTCGLK 201 Query: 114 TACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172 T R+P + LI G P+A PSAN SG+ S T +H+ + I L++DGG Sbjct: 202 TVAVRIPSHPIARALISLSGVPIAAPSANLSGRPSPTEAEHV-RKDLEPSIKLVLDGGPC 260 Query: 173 KIGLESTIVN-VQCEKKVRILRPGGLEIETLKRAI----------SVELEYCVDETST-- 219 +G+EST+++ + + +R+LR GGL E + + + V + + T Sbjct: 261 NVGVESTVIDGLNPDGGIRVLRLGGLSAEDITQCLVNAKTSGKLAEVPIIEVPNSNGTSL 320 Query: 220 -----PQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAI---------- 264 P +PGM HY+P ++V L + P + PI I+N Sbjct: 321 APGIQPTTPGMKYKHYSPNAKVTLINLIRPPIPQNWQSFPTPIDLIDNFTTNFRRENIVC 380 Query: 265 ----ISLNLSKTGKLKEA-----------------------------AFNLFNYMKIADD 291 I L L + G+L +A A LF+ M+ D+ Sbjct: 381 RPVSIGLMLIENGELLKAFKSYEEELDCDEVELIHYALGPINQPEISAQRLFSSMRSLDE 440 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320 I +P +GLG + RL +AA Sbjct: 441 CLVDIIFVEQVPLNGLGSTVMERLYKAAG 469 >gi|319942512|ref|ZP_08016822.1| Sua5/YciO/YrdC/YwlC family protein [Sutterella wadsworthensis 3_1_45B] gi|319803915|gb|EFW00833.1| Sua5/YciO/YrdC/YwlC family protein [Sutterella wadsworthensis 3_1_45B] Length = 348 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 85/242 (35%), Positives = 121/242 (50%), Gaps = 19/242 (7%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D A+ +A L+AG +A+PTETVYGLA D+ A+ Y K RP +PLI HV+ Sbjct: 16 DMAAIARAATILEAGGLVAMPTETVYGLAADADQEAAVTATYRAKGRPLNHPLIVHVASA 75 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + A + P + LA +WPGPLT+VL T T R P + Sbjct: 76 DDIPWWAEITPEAQKLADRYWPGPLTMVLK--KKPRCGGWVTGGQDTVALRCPSHPWAHA 133 Query: 127 LIETYGHP----LAIPSANRSGQISITNVKHI---LSSSICKEIPLIIDGGISKIGLEST 179 L+ YG P L PSAN G+IS + +H+ L ++ LI+DGG + G+EST Sbjct: 134 LLAAYGGPKHRGLTAPSANSFGRISPSTAQHVREDLGEKPAGKLDLILDGGPCEFGIEST 193 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV---DETSTPQSPGMLKSHYAPRSQV 236 ++N+ ILR G + RA+ E+ C P++ G LKSHYAP+++ Sbjct: 194 MINLSGSHP-EILRHG-----VITRAMLEEVLDCPVPDAGADAPRASGRLKSHYAPKTRA 247 Query: 237 RL 238 L Sbjct: 248 EL 249 >gi|34498673|ref|NP_902888.1| Sua5 family translation factor [Chromobacterium violaceum ATCC 12472] gi|34104526|gb|AAQ60884.1| probable translation initiation protein, Sua5/YciO/YrdC family [Chromobacterium violaceum ATCC 12472] Length = 321 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 103/329 (31%), Positives = 158/329 (48%), Gaps = 23/329 (6%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ +S T L +A L AG +A+PTETVYGLA D+ P A+ ++ K RPA +PL Sbjct: 1 MKSLSPT-PEGLDQAAALLRAGELVAVPTETVYGLAADATQPDAVAAIFRAKNRPADHPL 59 Query: 61 ICHVSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I H+ + + + AS P + + + FWPGPLTLVL ++ + + A T R Sbjct: 60 IVHLPGLEQLNEWASRVPDCAWPVIERFWPGPLTLVLP--ASEKVPAIVNAGQDTVALRW 117 Query: 120 PC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 + L++ P+A PSAN +IS T +H+ +++ I ++DGG +G+ES Sbjct: 118 SSHPLLQALLDRLQRPVAAPSANPFCRISPTTAEHV-RANMEGRIAAVVDGGPCAVGIES 176 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQV-R 237 TI+++ + ILRPG + L + + D P+ PG L SHYAP R Sbjct: 177 TILDLSGARPA-ILRPGAVTAAMLAPYLDLAETAAPD---APRVPGNLASHYAPHQPCYR 232 Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEA-------AFNLFNYMKIAD 290 L A R + + I+ ++ G LK A L+ + AD Sbjct: 233 LEAAEAEERADDAGWRQAAVLAIDAPA-----ARCGWLKRMPPTPEGYAQALYAALHQAD 287 Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAA 319 SG S+ P+ A+ +RL+RAA Sbjct: 288 ASGCPSVWIVLPPDEPAWRAVRDRLQRAA 316 >gi|237745647|ref|ZP_04576127.1| translation factor SUA5 [Oxalobacter formigenes HOxBLS] gi|229376998|gb|EEO27089.1| translation factor SUA5 [Oxalobacter formigenes HOxBLS] Length = 344 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 98/334 (29%), Positives = 160/334 (47%), Gaps = 27/334 (8%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + +++ + A L++G +A PTETVYGL D+ NP A+ +Y +K RPA +PLI HV+ Sbjct: 1 MKNADDILAAARILESGRLVAFPTETVYGLGGDAENPAAVAAIYALKNRPASHPLIVHVA 60 Query: 66 DISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 S + + P + L FWPGPLTL+L + + P + R P Sbjct: 61 SGSDIAYWSDRIPDEARKLMAAFWPGPLTLILK--RASHVLPDVAGGQDSVGLRCPSHPV 118 Query: 125 KK----LIETYGHPLAIPSANRSGQISITNVKHILSS-SICKEIPLIIDGGISKIGLEST 179 + L + +A PSANR G +S T +H+ + I+DGG S++G+EST Sbjct: 119 AQALLGLFKQGRGGVAAPSANRFGHVSPTMAQHVRDEFGDDPRLGAILDGGQSEVGIEST 178 Query: 180 IVN---VQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRS-- 234 I++ ++ V +LRPG + + I + + V + P++ G L SHYAPR+ Sbjct: 179 ILDLSRIETAGPV-LLRPGKIGASQIAEVIGMMPK--VPDNGAPRASGTLASHYAPRTPV 235 Query: 235 ---------QVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNY 285 Q+ +R R AL+ + ++P + + L + + L+ Sbjct: 236 AVIPSDKLLQLLVRLEENGHRVALLHYSSLPASRKMSLAGEVGLYCAPDVY--SHQLYAS 293 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 ++ D SGA I + P +N+RL+RAA Sbjct: 294 LRKLDRSGADVILVEATPETETWKGVNDRLKRAA 327 >gi|295673282|ref|XP_002797187.1| translation initiation protein Sua5 [Paracoccidioides brasiliensis Pb01] gi|226282559|gb|EEH38125.1| translation initiation protein Sua5 [Paracoccidioides brasiliensis Pb01] Length = 489 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 85/265 (32%), Positives = 133/265 (50%), Gaps = 36/265 (13%) Query: 8 DSNALRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 ++ L ++ E L + +P+A PTETVYGL D+ A++ +Y+ K+RP+ NPLI HVS Sbjct: 57 EAKTLLESAEVLQTSDIPVAFPTETVYGLGADATRSAAVQGIYKAKQRPSDNPLIVHVSS 116 Query: 67 ISMVKK----------HASVD----------------PLSLHLAKLFWPGPLTLVLDLLS 100 +++ H D P+ L FWPGPLT++L + Sbjct: 117 REQLQRILQSNSSSTDHGGSDSRKTRNQGREETNLIPPIYEPLISKFWPGPLTIILPNPT 176 Query: 101 TTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSI 159 + + P T+ L T R+P + LI PLA PSAN S + S T +H+ + + Sbjct: 177 PSPLAPEVTSTLTTFGARMPSSPLARLLIHLADRPLAAPSANASTKPSPTTAQHVF-TDM 235 Query: 160 CKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVE------LEYC 213 I +I+DGG +G+EST+V+ ILRPGG+ IE ++ E + Sbjct: 236 QGRIDIILDGGPCGVGVESTVVDGLLHPPA-ILRPGGIGIEEIRACPGWEDVRVGYKDGA 294 Query: 214 VDETSTPQSPGMLKSHYAPRSQVRL 238 + P++PGM HY+P+++V L Sbjct: 295 LQGKEAPRAPGMKYKHYSPKAKVVL 319 >gi|282850386|ref|ZP_06259765.1| Sua5/YciO/YrdC/YwlC family protein [Veillonella parvula ATCC 17745] gi|282579879|gb|EFB85283.1| Sua5/YciO/YrdC/YwlC family protein [Veillonella parvula ATCC 17745] Length = 343 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 101/323 (31%), Positives = 160/323 (49%), Gaps = 39/323 (12%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-VDPLSLHL 83 ++IPTETVYGL + + A+ ++Y K RP+ NPLI HV + +K + + + L Sbjct: 27 VSIPTETVYGLGANGLDSEAMDKIYAAKGRPSDNPLILHVPNSESIKSLVTEISATAQAL 86 Query: 84 AKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVP----CGFTKKLIETYGHPLAIP 138 FWPGPLT+ L +D+ P +T L R P C + L+E G P+A P Sbjct: 87 MDTFWPGPLTIT---LPKSDLVPDRATGGLSRVALRCPDHEAC---RVLLERAGIPIAAP 140 Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLE 198 SAN SG+ S T + + + + I I+D G IG+EST+V V + KV ILRPGG+ Sbjct: 141 SANISGRPSPTTAEDVY-NDMKGRISYILDAGPCTIGVESTVVEVH-DDKVIILRPGGIT 198 Query: 199 IETLKRAISVELEY---CVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNV 255 L+ ++ +EY V+ + P++PGM +HYAP + + + +P F + Sbjct: 199 KAQLENVVAT-VEYDTALVNAATKPKAPGMKYTHYAPDAP--MTVVVGSPEAIACTFKEL 255 Query: 256 PIKNIENAIISLNLSKTGKLKEAAFNLFNY--------MKIADDSGASSIAFS------- 300 + IE I L +T L + + Y + + D S + F+ Sbjct: 256 S-EGIEGPIGCLVSRETYDLIKGNTDFMCYCFGHHGDALALGHDFYKSLLHFNENHVTLI 314 Query: 301 ---SIPNHGLGIAINNRLERAAA 320 + + G G+AI NR+E+A++ Sbjct: 315 LAEGVDDDGFGVAIMNRMEKASS 337 >gi|242215074|ref|XP_002473355.1| predicted protein [Postia placenta Mad-698-R] gi|220727523|gb|EED81439.1| predicted protein [Postia placenta Mad-698-R] Length = 399 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 103/371 (27%), Positives = 168/371 (45%), Gaps = 54/371 (14%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +I S+T A+++ + ++ +A PTETVYGL + + A R++ K RP NPLI Sbjct: 23 EITSVTTLEAIQRGAKQINECQTVAFPTETVYGLGALALDAVAASRIFSTKGRPPDNPLI 82 Query: 62 CHVSDISMVK----KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 HVS +M+ + ++ L + FWPGPLTL+ + T + + TAN T Sbjct: 83 VHVSSDAMLNTLLPEGYTISRTYEILIRHFWPGPLTLLFP-TNPTLVPSIITANQPTVAV 141 Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P + LI P+A PSAN SG+ S T +H+ + ++ +I+DGG +GL Sbjct: 142 RMPSHPVARALIALADAPIAAPSANSSGRPSPTRAEHVF-KDLDGKLGVILDGGPCGVGL 200 Query: 177 ESTIVN-VQCEKKVRILRPGGLEIETLKRAISVELEYCVDE---------------TSTP 220 EST+++ + + +R+LRPGG+ +E L+ + EL D P Sbjct: 201 ESTVIDGLHADGNIRVLRPGGVTVEDLESVLQRELGDSGDVPKVLVHRRDFRDEAIEQAP 260 Query: 221 QSPGMLKSHYAPRSQV-------------------RLRAIH--VNPREALIRFG------ 253 +PGM HY+P V L ++H V E ++ G Sbjct: 261 TTPGMKYRHYSPAVPVILLRTSSPPSDVTPTPIKTFLESLHNRVQGSEGHLKIGLLAPSD 320 Query: 254 -NVPIKNIENAIISLNLSKTGKLKE---AAFNLFNYMKIADDSGASSIAFSSIPNHGLGI 309 +P ++ G + + +A LF+ + D +G I I G+ Sbjct: 321 SPLPTNFTSSSDFEWQTFPLGPIADPSISAQRLFDGLLTLDAAGVDLILIEEIKEEREGL 380 Query: 310 AINNRLERAAA 320 A+ NR+ +AA Sbjct: 381 AVMNRVNKAAG 391 >gi|295707225|ref|YP_003600300.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus megaterium DSM 319] gi|294804884|gb|ADF41950.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus megaterium DSM 319] Length = 346 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 99/330 (30%), Positives = 164/330 (49%), Gaps = 31/330 (9%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + L +A PTETVYGL D+ + A+ +++ K RP+ NPLI H+ D + Sbjct: 21 IEEAADLLRNHEVVAFPTETVYGLGGDATSDKAVDKIFAAKGRPSDNPLIVHIGDKEQL- 79 Query: 72 KHASVDPLSLHLAKL---FWPGPLTLVL---DLLSTTDIHPLSTANLKTACFRVPCG-FT 124 H V+ + K+ FWPGPLT++L D +S TA L + R+P Sbjct: 80 -HTFVESIPSKAEKVIDAFWPGPLTVILPKKDRVSDK-----VTAGLNSIAVRMPSHPVA 133 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 L++ P+A PSAN SG+ S T H++ + + I ++DGG + +G+EST+++ Sbjct: 134 LALLKKVALPIAAPSANLSGKPSPTLAHHVM-NDLEGRISGVVDGGATGVGVESTVLDCT 192 Query: 185 CEKKVRILRPGGL---EIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPR-------- 233 E + ILRPGG+ E+E + + V+ D+ + P+SPGM +HYAP Sbjct: 193 EEIPI-ILRPGGITQKELENVIGPVKVDRALLSDKEA-PKSPGMKYTHYAPDAPLVIVDG 250 Query: 234 SQVRLRAIHVNPREALIRFGNVPIKNIENAIIS---LNLSKTGKLKEAAFNLFNYMKIAD 290 S ++I ++ R G + E+A + + L+ A +L+ ++ + Sbjct: 251 SSDFFQSIIDRYKDQGKRVGVLTTSEHEDAYKADAVITCGSRSNLETVASHLYESLRSFN 310 Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + I S G+G A+ NRL +AA Sbjct: 311 EGDVDVIVSESFSEEGVGHAVMNRLMKAAG 340 >gi|70725920|ref|YP_252834.1| hypothetical protein SH0919 [Staphylococcus haemolyticus JCSC1435] gi|68446644|dbj|BAE04228.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 347 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 87/225 (38%), Positives = 122/225 (54%), Gaps = 9/225 (4%) Query: 18 FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77 + D GL IAIPTETVYGL D+RN A+ +Y+ K RP+ NPLI H+ D S + + S Sbjct: 28 YNDGGL-IAIPTETVYGLGADARNQYAVSNIYQAKGRPSDNPLIVHIHDKSQLDQIVSHL 86 Query: 78 PLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETY-GHPL 135 P L FWPGP++ +L L + T L++ R+P + I Y P+ Sbjct: 87 PEEAKCLMDEFWPGPISFILPLRQGYLCEKV-TGGLQSIAVRMPSHPIGRAILQYIDIPI 145 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 A PSAN SG+ S T +H+ + + +I I++G S+ GLEST+++ + RI RPG Sbjct: 146 AAPSANVSGRPSPTTFQHVF-NDLNGKIDGIVNGDQSEEGLESTVLDC-TQFPFRIARPG 203 Query: 196 GLEIETLKRAI--SVELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238 + L SVE EY D S P +PGM HYAP + V + Sbjct: 204 SITQAMLNDVFPGSVE-EYHYDVNSQPIAPGMKYKHYAPDTPVTM 247 >gi|323309143|gb|EGA62370.1| Sua5p [Saccharomyces cerevisiae FostersO] Length = 417 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 118/381 (30%), Positives = 180/381 (47%), Gaps = 67/381 (17%) Query: 5 SITD---SNALRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 +ITD AL +A + D +A PTETVYGL + N ++ +Y+ K RP+ NPL Sbjct: 33 TITDPETETALVEAARIIRDTDETVAFPTETVYGLGGSALNDNSVLSIYKAKNRPSDNPL 92 Query: 61 ICHVSDISMVKK------HASVDPLSLHLAKLF-------WPGPLTLVLDLLST--TDIH 105 I HVS I + + H S L ++ ++ WPGPLT++L + S+ + + Sbjct: 93 ITHVSSIDQLNRKVFNQPHLSGTSLFDNIPSIYRPLISSLWPGPLTILLPVPSSEHSALS 152 Query: 106 PLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP 164 L+TA+ T R+P + LI P+A PSAN S + S T H+ + +IP Sbjct: 153 KLTTADQPTFAVRIPANPVARALIALSDTPIAAPSANASTRPSPTLASHVY-HDLKDKIP 211 Query: 165 LIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKR-------AISVELEYCVDET 217 +I+DGG K+G+EST+V+ C + +LRPGG E + + VE + V++ Sbjct: 212 IILDGGACKVGVESTVVDGLCNPPM-LLRPGGFTYEEIVKLGGEAWSLCKVENKKTVEKG 270 Query: 218 STPQSPGMLKSHYAPRSQVRLRAIH---------VNPREALIRFGNVPIK---NIENAII 265 ++PGM HY+P ++V L H + E L R +K NI+ I Sbjct: 271 EKVRTPGMKYRHYSPSAKVVLLVPHCEGDGILKGXDRMERLKRLIETELKANRNIKKIAI 330 Query: 266 --SLNL----------------SKTGKL-------KEAAFNLFNYMKIADDSGASSIAF- 299 SL L SKT + +E NLF ++ D++ + F Sbjct: 331 LTSLKLRDSDLQSKIFNEPDFSSKTFIIERLGQSGEEIQTNLFAALRKVDENDKVDLIFV 390 Query: 300 SSIPNHGLGIAINNRLERAAA 320 I G G+A+ NRL +AAA Sbjct: 391 EGINEEGEGLAVMNRLRKAAA 411 >gi|91790454|ref|YP_551406.1| translation factor SUA5 [Polaromonas sp. JS666] gi|91699679|gb|ABE46508.1| translation factor SUA5 [Polaromonas sp. JS666] Length = 331 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 99/336 (29%), Positives = 159/336 (47%), Gaps = 25/336 (7%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 I+ TD A+ +A + AG + PTETVYGL D+ + A+ ++ K RPA +PLI Sbjct: 2 ILPGTDPQAIHEAARRIQAGGLVGFPTETVYGLGADASSDQAVAGIFSAKGRPANHPLIV 61 Query: 63 HVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPLSTANLKTACFR 118 HV+D V +A SV P + L + FWPGPLT++L + ++ + L+ Sbjct: 62 HVADAQQVADYASSVPPFAARLMQAFWPGPLTVILPRREGVAAAAAGGQGSIGLRCPAHP 121 Query: 119 VPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 V F + +A PSANR G++S T +H+ + L++DGG ++G+ES Sbjct: 122 VALAFLRACATG----VAGPSANRFGRVSPTTAQHVQQE--FGDSLLVLDGGPCEVGIES 175 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAIS---VELEYCVDETS----TPQSPGMLKSHYA 231 +IV+ + V +LRPG L L+ A ++ + E + P++ G L++HYA Sbjct: 176 SIVDCTRGRPV-LLRPGVLTRAQLEAACGEPVLDKDELAREAAGLGDAPRASGTLEAHYA 234 Query: 232 PRSQVRL-RAIHVNPREALIRFGNVPIKNIENAIISLNLSKT------GKLKEAAFNLFN 284 P ++VRL A + L+ I +I+ + + A LF Sbjct: 235 PHAKVRLMDAGAIQTALDLLGADAAHIAIYARSIVRIKSDQVLYRRMPDDAAATAQQLFA 294 Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ D G I +P + +RL RAAA Sbjct: 295 VLRDFDAQGVKLIWIEHLPATAAWDGVRDRLARAAA 330 >gi|119193304|ref|XP_001247258.1| hypothetical protein CIMG_01029 [Coccidioides immitis RS] Length = 736 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 82/239 (34%), Positives = 126/239 (52%), Gaps = 26/239 (10%) Query: 24 PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK----------- 72 P+A PTETVYGL D+ A++ +Y K+RP+ NPLI HVS +++ Sbjct: 479 PVAFPTETVYGLGADATRSAAVQGIYRAKQRPSDNPLIVHVSSREQLERLLRPPGCPTLN 538 Query: 73 ------HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125 + + P+ L + FWPGPLT+++ + + P T+NL T R+P + Sbjct: 539 QNSLQTSSLIPPIYEPLIERFWPGPLTILIPNPKHSPLAPEVTSNLSTFGVRMPSSSLAR 598 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LI+ PLA PSAN S + S T +H+ + + I +I+DGG +G+EST+V+ Sbjct: 599 LLIKLADRPLAAPSANASTKPSPTTAQHVY-ADLHGRIDIILDGGPCGVGVESTVVD-GL 656 Query: 186 EKKVRILRPGGLEIETLKRAISVE------LEYCVDETSTPQSPGMLKSHYAPRSQVRL 238 ILRPGG+ IE ++ E + + TP++PGM HY+PR++V L Sbjct: 657 NHPPAILRPGGVGIEEIRACRGWEDVRVGYKDGALPGKMTPRAPGMKYRHYSPRAKVVL 715 >gi|329767330|ref|ZP_08258855.1| hypothetical protein HMPREF0428_00552 [Gemella haemolysans M341] gi|328836019|gb|EGF85710.1| hypothetical protein HMPREF0428_00552 [Gemella haemolysans M341] Length = 343 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 99/327 (30%), Positives = 167/327 (51%), Gaps = 21/327 (6%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 K + G IAIPTETVYGL+ ++ N A+ ++YE K RP+ NPLI H ++S + Sbjct: 20 KLTTYYKEGKLIAIPTETVYGLSANAMNDEAVSKIYEAKGRPSDNPLIVHFYEMSQLDSI 79 Query: 74 ASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETY 131 + + ++ L FWPGP+TL+L+ + TA L T R+P T +++++ Sbjct: 80 VNYNDENIKKLINNFWPGPMTLILNAKDNNGVSKKVTAGLNTLAVRMPSNITAREILKET 139 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK-VR 190 LA PSAN SG+ S T +H+ + +I +II+ S IGLEST+++ C + + Sbjct: 140 EVLLAAPSANTSGKPSPTKFEHVY-HDLNGKIDVIIEDEQSDIGLESTVID--CTRYPLV 196 Query: 191 ILRPGGLEIETLKRAI---SVEL-EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP- 245 I RPG + E ++ + SV+ E + + +TP +PGM HY+P + + L Sbjct: 197 IARPGEITKEDIEGVLGEGSVKYNEEILTKNTTPIAPGMKYRHYSPEADLVLFNDSFEKL 256 Query: 246 ----REALIRFGNVPIKNIENAIISLNLS------KTGKLKEAAFNLFNYMKIADDSGAS 295 +E + G + K +E+ + LN+S ++++ NL+N ++ D+ Sbjct: 257 ISILKERDKKTGFITYKEMESEVDFLNVSVKYLADNEKSVEQSNKNLYNILREFDEEEVE 316 Query: 296 SIAFSSIPNHGLGIAINNRLERAAAPR 322 I I A+ NRL +A + + Sbjct: 317 EIFILPIEETKENKALLNRLNKAISKK 343 >gi|320170442|gb|EFW47341.1| Sua5/YciO/YrdC/YwlC family protein [Capsaspora owczarzaki ATCC 30864] Length = 331 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 101/324 (31%), Positives = 157/324 (48%), Gaps = 37/324 (11%) Query: 30 ETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK--HASVDPLSLHLAKLF 87 +TVYGLA ++ + A+ +++ K RPA NPLI HV+D S +++ + L F Sbjct: 3 QTVYGLAANAFSDDAVAKIFRAKNRPADNPLIVHVADESQLREVVEGEISQREQQLIAAF 62 Query: 88 WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQI 146 WPGPLTL+L + L TA L T R+P K +I G PLA PSAN SG+ Sbjct: 63 WPGPLTLILP--RKISVSRLVTAGLTTVGVRMPSHPVAKAIIARCGKPLAAPSANISGRP 120 Query: 147 SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL---EIETLK 203 S T H++ + K + I+DGG + +G+EST+++ E + ILRPGG+ EIET+ Sbjct: 121 SPTCGAHVIGDMMGK-VAGIVDGGATGVGVESTVIDCSPEIPI-ILRPGGITKEEIETII 178 Query: 204 RAISVELEYCVDE------------TSTPQSPGMLKSHYAPRS------------QVRLR 239 ++ E +E P++PGM +HYAP++ Q + Sbjct: 179 GPVTYAQELHSNERPESAKDVSALSGHVPRAPGMKYAHYAPKAPVTVVEGSPQFLQSLVD 238 Query: 240 AIH-VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS--S 296 A H +P + + A + + + A +L++ ++ D + S Sbjct: 239 AHHQQHPTSKIGVLATDESRGQYRADVVVTCGARSDVASIARSLYDALRQFDIATPSVDC 298 Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320 I S GLG A+ NRL +AA+ Sbjct: 299 IYSESFSTDGLGAAVMNRLLKAAS 322 >gi|241563383|ref|XP_002401681.1| sua5, putative [Ixodes scapularis] gi|215501873|gb|EEC11367.1| sua5, putative [Ixodes scapularis] Length = 227 Score = 125 bits (315), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 80/214 (37%), Positives = 118/214 (55%), Gaps = 11/214 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + KA E++ +G + +PTETVYG+ D+ N A ++++ K RPA+NPLI HV+ I K Sbjct: 16 ISKAVEYIKSGKVVVLPTETVYGIGADATNNEACLKIFQFKNRPAINPLIVHVASIEQAK 75 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 + + L+ +A+ FWPGPL++V+ L +I P T L T R+P +LI Sbjct: 76 EIGEFNDLATKIAEKFWPGPLSIVVPLKVNANIAPSVTVGLNTIAIRMPSYPLALELIRQ 135 Query: 131 YGHPLAIPSANRSGQISITNVKHIL-----SSSICKEIPLIIDGGISKIGLESTIVNVQC 185 G P+A PSAN S IS TNV+H+ ++ I P I S+ GLESTI++ Sbjct: 136 SGVPIAAPSANPSNYISPTNVEHVTKHFSENAEIFILAPEIYQ---SEYGLESTIIDTTT 192 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETST 219 ILR G + E L+ + V++ ETST Sbjct: 193 VTPT-ILREGFITAEILEEVLGVKV-LKASETST 224 >gi|297618444|ref|YP_003703603.1| Sua5/YciO/YrdC/YwlC family protein [Syntrophothermus lipocalidus DSM 12680] gi|297146281|gb|ADI03038.1| Sua5/YciO/YrdC/YwlC family protein [Syntrophothermus lipocalidus DSM 12680] Length = 336 Score = 125 bits (315), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 101/326 (30%), Positives = 163/326 (50%), Gaps = 25/326 (7%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 +++ + +A + G +A PTETVYGL D+ N A+ +++ K R NPLI H+S++ Sbjct: 17 EASVIAEAAALIRKGEVVAFPTETVYGLGADAFNEEAVCKIFIAKGRQPDNPLIVHISNM 76 Query: 68 SMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125 S V SV + L FWPGPLTLV++ L + + + A T R+P Sbjct: 77 SQVSALIKSVPDEARLLMDRFWPGPLTLVMESLPS--VASAARAGGNTVGVRMPRHPVAL 134 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LI+ G PLA PSAN SG+ S T +H+ + + I I+D G + +G+EST++++ Sbjct: 135 ALIDEAG-PLAAPSANLSGRPSPTTPEHV-KNDLDGRISAILDAGPTGMGIESTVLDM-T 191 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL------- 238 +K RILRPGG+ +E L+ + + ET+ + P HY R++V L Sbjct: 192 QKPFRILRPGGISLEELEEVLP-----GMVETAEAKGPADRYPHYQTRARVILLSEPADV 246 Query: 239 -RAIHVNPRE----ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293 A+H ++ L+ ++IE L +EA L+ ++ AD G Sbjct: 247 ASALHEYKKQGKKVGLVAHSYEEYRHIEKE-SDLVYWLPPSAEEAGKRLYAVLRDADQRG 305 Query: 294 ASSIAFSSIPNHGLGIAINNRLERAA 319 + F P G G A+ RL++++ Sbjct: 306 LDILFFEPYPEEGKGSALMYRLKKSS 331 >gi|294501877|ref|YP_003565577.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus megaterium QM B1551] gi|294351814|gb|ADE72143.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus megaterium QM B1551] Length = 346 Score = 125 bits (315), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 100/330 (30%), Positives = 165/330 (50%), Gaps = 31/330 (9%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + L +A PTETVYGL D+ + A+ +++ K RP+ NPLI H+ D + Sbjct: 21 IEEAADLLRNHEVVAFPTETVYGLGGDATSDKAVDKIFAAKGRPSDNPLIVHIGDKEQL- 79 Query: 72 KHASVDPLSLHLAKL---FWPGPLTLVL---DLLSTTDIHPLSTANLKTACFRVPCG-FT 124 H V+ + K+ FWPGPLT++L D +S TA L + R+P Sbjct: 80 -HTFVESIPSKAEKVIDAFWPGPLTVILPKKDRVSDK-----VTAGLNSIAVRMPSHPVA 133 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 L++ P+A PSAN SG+ S T H++ + + I ++DGG + +G+EST+++ Sbjct: 134 LALLKKVALPIAAPSANLSGKPSPTLAHHVM-NDLEGRISGVVDGGATGVGVESTVLDCT 192 Query: 185 CEKKVRILRPGGL---EIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPR-------- 233 E + ILRPGG+ E+E + + V+ D+ + P+SPGM +HYAP Sbjct: 193 EEIPI-ILRPGGITQKELENVIGPVKVDRALLSDKEA-PKSPGMKYTHYAPDAPLVIVDG 250 Query: 234 SQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTG---KLKEAAFNLFNYMKIAD 290 S ++I ++ R G + E+A + + G L+ A +L+ ++ + Sbjct: 251 SSDFFQSIIDGYKDQGKRVGVLTTSEHEDAYKADAVITCGSRSNLETVASHLYESLRSFN 310 Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + I S G+G A+ NRL +AA Sbjct: 311 ECDVDIIVSESFSEEGVGHAVMNRLMKAAG 340 >gi|291532654|emb|CBL05767.1| translation factor SUA5 [Megamonas hypermegale ART12/1] Length = 271 Score = 125 bits (315), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 86/237 (36%), Positives = 129/237 (54%), Gaps = 12/237 (5%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D AL++A + + G +A PTETVYGL D N A + +Y K RP+ NPLI H++D Sbjct: 12 DDEALKRAGQCIKDGGLVAFPTETVYGLGGDGLNEVASKNIYLAKGRPSDNPLILHINDQ 71 Query: 68 SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FT 124 M+ + S V P++ + F PGP+T++ L ++I P + T L T R+P Sbjct: 72 KMLGRIVSEVTPMAKKIMTAFCPGPITII---LPKSNIVPKAVTGGLDTIAVRMPDNDIA 128 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + LI+ P+A PSAN SG+ S T + + + I +++DGG + G+ESTIV+ Sbjct: 129 RALIKYADTPIAAPSANISGRPSPTTAQAVY-KDLQSRIDMVLDGGACQFGVESTIVD-- 185 Query: 185 CEKKVR-ILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQVRL 238 C + V ILRPG + E L+ V + V P++PGM HYAP+ + L Sbjct: 186 CTEDVPIILRPGAITKEMLEEIFPVVKIDKAIVGANVVPKAPGMKYKHYAPKVDMIL 242 >gi|296813235|ref|XP_002846955.1| translation initiation protein Sua5 [Arthroderma otae CBS 113480] gi|238842211|gb|EEQ31873.1| translation initiation protein Sua5 [Arthroderma otae CBS 113480] Length = 447 Score = 125 bits (315), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 86/252 (34%), Positives = 138/252 (54%), Gaps = 26/252 (10%) Query: 11 ALRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 AL +A E + + +P+A PTETVYGL D+ A++ +Y+ K+RP+ NPLI HVS Sbjct: 48 ALLEAAEAIRTSDVPVAFPTETVYGLGADATRSAAVQGIYKAKQRPSDNPLIVHVSSREQ 107 Query: 70 VKK---------HASVDPLSLHLAKL-------FWPGPLTLVLDLLSTTDIHPLSTANLK 113 +++ A +P + + K+ FWPG L+++L S + P TA+L Sbjct: 108 LERLLQTSQPSNGAIHNPTASPIPKIYEPVIEKFWPGALSIILPNPSHLPLAPEVTASLS 167 Query: 114 TACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172 T R+P + LI P+A PSAN S + S T +H+ + + I +I+DGG Sbjct: 168 TFAVRMPSSPLARLLIALADRPVAAPSANASTKPSPTTAQHVY-TDLQGRIDIILDGGPC 226 Query: 173 KIGLESTIVNVQCEKKVRILRPGGLEIETLKRAI---SVELEY---CVDETSTPQSPGML 226 +G+EST+V+ ILRPGG+ I+ L+ +V++ Y + +TP++PGM Sbjct: 227 GVGVESTVVD-GLSSPPAILRPGGVGIDELRTCPGWENVQIGYKDGALQGKATPRAPGMK 285 Query: 227 KSHYAPRSQVRL 238 HY+P+++V L Sbjct: 286 YKHYSPKARVVL 297 >gi|289423366|ref|ZP_06425174.1| SUA5 protein [Peptostreptococcus anaerobius 653-L] gi|289156297|gb|EFD04954.1| SUA5 protein [Peptostreptococcus anaerobius 653-L] Length = 349 Score = 125 bits (315), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 105/346 (30%), Positives = 165/346 (47%), Gaps = 45/346 (13%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + + + + L G + PTETVYGL ++ + A +++YE K RP+ NPL+ HV D Sbjct: 15 DQDIIEEFAKMLAEGKTVIFPTETVYGLGANALDEKAAQKIYEAKGRPSDNPLLVHVCDK 74 Query: 68 SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 V VD + L FWPGPLT+V I ++ L T R+P + Sbjct: 75 EDVYDLVEYVDDKAKILIDKFWPGPLTIVFKKKPI--IPDRTSGGLDTVAIRMPSDEIAR 132 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 ++I G P+A PSAN SG+ S T HI+ + + I+ G G+ESTIV+V Sbjct: 133 RIIRAAGVPIAAPSANISGRPSPTRPDHII-RDMTGRVDGILAGAPCTYGVESTIVDVSG 191 Query: 186 EKKVRILRPGGLEIETLKRAI-SVELEYCV---DETSTPQSPGMLKSHYAPRSQVRLRAI 241 + V +LRPG + +E + + L+ + D+ ++PGM +HY+PR++V + + Sbjct: 192 DYPV-VLRPGSVTLEMIAGVLGDARLDPSILNKDDNIKAKAPGMKYTHYSPRAEVYIVDL 250 Query: 242 H----VNPREALI--------------------RFGNVPIKNIENAIISLNLSKTGKLKE 277 V+ + L+ RF V I+ I SL G+ +E Sbjct: 251 KGDDFVDKIKELVGQNADMGKKTGLMCMDIDMDRFDGVDIE-----IFSL-----GQTEE 300 Query: 278 -AAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 AA LF+ + D G I + +G+AI NRL+++A R Sbjct: 301 IAAKRLFDGLIDLDKRGVDVIYSVAFEEKNVGVAIMNRLKKSAGYR 346 >gi|146092262|ref|XP_001470247.1| hypothetical protein [Leishmania infantum] gi|134085041|emb|CAM69442.1| conserved hypothetical protein [Leishmania infantum JPCM5] Length = 386 Score = 125 bits (315), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 111/366 (30%), Positives = 170/366 (46%), Gaps = 57/366 (15%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 T LR+A + L G +AIPTETVYGL ++ +A++ +Y +K RP +PLICHV Sbjct: 7 TSPEDLRRAADALVQGKLVAIPTETVYGLGGNALIGSAVKSIYAVKGRPPTDPLICHVYT 66 Query: 67 ISMVKK-------HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 + +K +V+ L+ + WPGPLT+V T + T R+ Sbjct: 67 LDGARKLWDLKWDEGAVE-LACTIGAALWPGPLTIVCKASPT--LPDCVTGGSGYVGARI 123 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP-LIIDGGISKIGLE 177 P T KL+E P+A PSAN G +S T +H+ ++ LIIDGG S IG+E Sbjct: 124 PNNPITLKLLEMADVPVAAPSANTFGHVSPTTAQHVYDDLAARDPELLIIDGGQSAIGIE 183 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAIS-------VEL---EYCVDETSTPQ-SPGML 226 ST+ V+ + V +LR G + + + RAI+ VE+ D T P SPG L Sbjct: 184 STVAKVEAKDLVVVLRRGCITVSMIHRAIADRYPQTRVEIRDTRIMCDPTKAPMVSPGQL 243 Query: 227 KSHYAPRSQVRLRAIHVNPREALIRFGNVPI-----KNI----ENAIISLN--------- 268 +HY+P L + AL +VP+ K++ E ++ N Sbjct: 244 LTHYSPHVPSSL--LTPGSLAALTASADVPVYVHRGKDVVPLCETVVLDFNGYLSRFRDT 301 Query: 269 ------LSKTGKLKEAAFNLFNYMKIADD-SGASSIAF---SSIPN----HGLGIAINNR 314 +S G +E + +F+ ++ + GA + F S P+ L A+ +R Sbjct: 302 CLFYHDMSPDGNPEEGCYAVFDALRATETIKGAKGLVFPLISEWPHDKAKEDLLTAMEDR 361 Query: 315 LERAAA 320 L RAA+ Sbjct: 362 LFRAAS 367 >gi|154281557|ref|XP_001541591.1| hypothetical protein HCAG_03689 [Ajellomyces capsulatus NAm1] gi|150411770|gb|EDN07158.1| hypothetical protein HCAG_03689 [Ajellomyces capsulatus NAm1] Length = 490 Score = 125 bits (314), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 86/265 (32%), Positives = 138/265 (52%), Gaps = 36/265 (13%) Query: 8 DSNALRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 ++ L +A E L + +P+A PTETVYGL D+ A++ +Y+ K+RP+ NPLI HVS Sbjct: 57 EAKVLLEAAEALRTSDIPVAFPTETVYGLGADATRSAAVQGIYKAKQRPSDNPLIVHVSS 116 Query: 67 ISMVKK----HAS----------------------VDPLSLHLAKLFWPGPLTLVLDLLS 100 +++ H+S + P+ L FWPGPLT++L + Sbjct: 117 KEQLQRLLQPHSSSPSRGEYGSRTEGSQQGGKRNFIPPIYEPLISKFWPGPLTIILPNPT 176 Query: 101 TTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSI 159 + + P T+ L+T R+P + LI PLA PSAN S + S T +H+ + + Sbjct: 177 PSPLAPEVTSTLRTFGVRMPSSPVARLLIYLADRPLAAPSANASTKPSPTTAQHVY-ADL 235 Query: 160 CKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS---VELEY---C 213 I +I+DGG +G+EST+V+ +LRPGG+ IE ++ V++ Y Sbjct: 236 QGRINMILDGGPCGVGVESTVVDGLLYPPA-VLRPGGVGIEEIRACPGWEDVQIGYKDGA 294 Query: 214 VDETSTPQSPGMLKSHYAPRSQVRL 238 + P++PGM HY+P+++V L Sbjct: 295 LQGKEVPRAPGMKYKHYSPKAKVVL 319 >gi|294339381|emb|CAZ87737.1| putative Translation factor, SUA5 type [Thiomonas sp. 3As] Length = 334 Score = 125 bits (314), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 100/320 (31%), Positives = 153/320 (47%), Gaps = 23/320 (7%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 +A L+AG + +PTETVYGLA D+ N A+ R+Y K RPA +P+I H+ + + Sbjct: 17 EAVRRLEAGELVGLPTETVYGLAADAENVQAVARIYAAKGRPADHPVIVHIHRAADLGHW 76 Query: 74 ASVDPLSLH-LAKLFWPGPLTLVLDLL-STTDIHPLSTANLKTACFRVPCGFTKKLIETY 131 AS P + LA FWPGPLTL+L D + C P I Sbjct: 77 ASEVPETARKLAAAFWPGPLTLILPRKPGVADACAGGQNTIGLRCPSHPVAQAVLAIFKG 136 Query: 132 GH-PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G LA PSANR G+IS T H+ + + ++ L++DGG +G+ESTIV+ + R Sbjct: 137 GQGGLAAPSANRFGRISPTTAAHV-HAELGDDL-LVLDGGACAVGIESTIVDCTAQPP-R 193 Query: 191 ILRPGGLEIETLKRAISV-ELEYCVDETSTPQSPGMLKSHYAPRS--------QVRLR-- 239 ILRPG L+ + + + V E + S P+ G+L +HYAPR+ Q+ R Sbjct: 194 ILRPGQLQAADIAQTLGVAEADLLRPAESAPRVAGVLPAHYAPRTPLQWCSREQINARWE 253 Query: 240 -AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIA 298 R ++ F P+ + ++L ++ L+ ++ D +G I Sbjct: 254 IGTSAGRRIGVLAFPPQPLAP-HPSWVTLPADPAAYAQQ----LYAVLRRLDAAGLEEIC 308 Query: 299 FSSIPNHGLGIAINNRLERA 318 +P +A+ +RL RA Sbjct: 309 VEVLPPSPAWLALRDRLTRA 328 >gi|301116637|ref|XP_002906047.1| conserved hypothetical protein [Phytophthora infestans T30-4] gi|262109347|gb|EEY67399.1| conserved hypothetical protein [Phytophthora infestans T30-4] Length = 363 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 93/358 (25%), Positives = 176/358 (49%), Gaps = 39/358 (10%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D+ A + L G +A PTETVYGL ++ N A+ ++E K RP +PLI HV + Sbjct: 8 DAEGFSFAAQQLRLGQLVAFPTETVYGLGANALNSEAVLAIFEAKARPLTDPLIVHVPAL 67 Query: 68 SMVKKHASVDPLSLH----LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 K + P L + FWPGPLTL+ + ++ + +AN R P Sbjct: 68 DDAVKLVDMTPTGRQAFECLGRAFWPGPLTLIAK--AVPELPLMLSANTGFVGLRCPKHP 125 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSS-SICKEIPLI--IDGGISKIGLEST 179 + L++ P+A PSANR G +S T KH++ C+ + +I + G ++G+EST Sbjct: 126 IAQALLKEAKVPVAAPSANRFGHVSPTTAKHVMDDLGACENLSVIEATEEGCCEVGIEST 185 Query: 180 IVNVQCEK-KVRILRPGGLEIETLK--------------RAISVELEYCVDETSTPQSPG 224 +V + E+ K+ + R GG+ + LK ++++ E + Q+PG Sbjct: 186 VVKIVPEECKLIVFRRGGVSEQALKLVLEDNAELLGGQYEVVTIQKEAKMQTKEAQQAPG 245 Query: 225 MLKSHYAPRSQVRL------RAIHVNPREALIRFGNV----PIKNIENAIIS-LNLSKTG 273 + +HYAP L + + ++ L R+ + + ++++ + L+LS TG Sbjct: 246 QMITHYAPDVDTYLYQADAAETMDASRKQDLSRWVVIDFHGKLSDLKDRVGGYLDLSPTG 305 Query: 274 KLKEAAFNLFNYMKIADD-SGASSIAFSSIPN--HGLGIAINNRLERAAAPRNQSQRI 328 + EA+ +F+ ++ +++ G + + + + H A+++R+ RAA+ + ++ ++ Sbjct: 306 DVAEASQRIFDSLRWSENVQGVERVLITGVSSETHEQAAALHDRMYRAASGKQRALQL 363 >gi|323527240|ref|YP_004229393.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. CCGE1001] gi|323384242|gb|ADX56333.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. CCGE1001] Length = 360 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 104/337 (30%), Positives = 160/337 (47%), Gaps = 49/337 (14%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS---DISMVK 71 A LDAG +A PTETVYGL D+ NP A+ R+Y K RPA +P+I H++ D + Sbjct: 34 AAALLDAGGLVAFPTETVYGLGGDAENPDAVARIYAAKGRPANHPVIVHLAPQGDPNYWV 93 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 +H + + L FWPGPLTL+L I + + R P + L+E Sbjct: 94 EHLPQE--AQRLIDAFWPGPLTLILK--RAARIPAAVSGGQDSVGLRCPSHPVAQALLEA 149 Query: 131 Y-----GH-PLAIPSANRSGQISITNVKHI---LSSSICKEIPLIIDGGISKIGLESTIV 181 + GH +A PSANR G +S T +H+ S+I ++DGG S +G+ESTI+ Sbjct: 150 FSALRSGHGGVAAPSANRFGHVSPTTAQHVRDEFGSAIH-----VLDGGASDVGIESTIL 204 Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVD--ETSTPQSPGMLKSHYAPRSQVRLR 239 ++ +LRPG + + + + E D + + P++ G LK+HYAPR+ + L Sbjct: 205 DL-SRGFPALLRPGRVTPQEIADVLG-EAPRLPDGSDATAPRASGTLKAHYAPRTPLALL 262 Query: 240 AI-HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEA---------------AFNLF 283 + P A G E + S+ G+ +A A L+ Sbjct: 263 PFPALEPLLAARAAG-------ERVALVARASRAGQWADAEGVHFIAAPEDPHVYARELY 315 Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ D + + I +P+ IA+N+RL RAAA Sbjct: 316 GLLRALDRANVARILIEKLPDTIEWIAVNDRLGRAAA 352 >gi|149921509|ref|ZP_01909960.1| Sua5/YciO/YrdC/YwlC [Plesiocystis pacifica SIR-1] gi|149817584|gb|EDM77052.1| Sua5/YciO/YrdC/YwlC [Plesiocystis pacifica SIR-1] Length = 356 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 106/321 (33%), Positives = 155/321 (48%), Gaps = 25/321 (7%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLSLHL 83 +A PTETVYGL ++ +P A+ +Y K RP+ NPLI HV D + A+ PL+ L Sbjct: 39 VAFPTETVYGLGANALDPRAVAGIYAAKGRPSTNPLIVHVRDSDHARTLVAAWPPLAQAL 98 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142 A+ FWPGPLTLVL + L +A L T R P + L+ PLA PSANR Sbjct: 99 AEAFWPGPLTLVLPKRGL--VPDLVSAGLDTVGVRAPAHPVAQALLRAALLPLAAPSANR 156 Query: 143 SGQISITNVKHILSS--SICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200 S IS T H+ S + + I+DGG +++G+EST++++ + +LR GG+ Sbjct: 157 SQAISPTTAAHVARSLAHVDADALTILDGGTTRVGIESTVLDL-SRGQPTVLRLGGVSTR 215 Query: 201 TLKRAISVELEYCV----------DETSTPQSPGMLKSHYAPRSQV------RLRAIHVN 244 L+ ++ E D SPGM HYAP QV LRA Sbjct: 216 ALEAELARHPELGARLVHATNGSKDTEVARPSPGMDARHYAPAGQVLLAPLDTLRARLER 275 Query: 245 PREALIR-FGNVPIKNIEN-AIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302 +AL R G + ++E + +L + A L+ + D+ G S+ ++ Sbjct: 276 DGDALPRPLGALTRGDVEALGAVDHHLRMPDDASDYASMLYAALHTLDELGCGSVLIEAV 335 Query: 303 PNHGLGIAINNRLERAAAPRN 323 P+ A+ +RL RAA PR Sbjct: 336 PDAPSWAAVADRLRRAATPRG 356 >gi|308162394|gb|EFO64793.1| SUA5 protein [Giardia lamblia P15] Length = 369 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 119/366 (32%), Positives = 177/366 (48%), Gaps = 54/366 (14%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +I+ T S L A L G +AIPTETVYGLA D+ + TA +++ +K+RPA +PLI Sbjct: 4 RILGTTQSE-LADAAGALQRGDLVAIPTETVYGLAADALSETACVKIFALKQRPASDPLI 62 Query: 62 CHVSDISMVKKHA----SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 H+S S + A V P+ LA FWPGPLT+VL + + + TA +T Sbjct: 63 VHISHSSQLPIIAVISTEVSPIVDALAATFWPGPLTMVLP--AAPCVPSIVTAGSQTVGV 120 Query: 118 RVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P + +IE PLA PSAN G IS T + + + + ++ LI+DGG +G+ Sbjct: 121 RMPRHPVARAIIELAARPLAAPSANMFGSISPTQPEDVAAEFVNSDL-LIVDGGRCDVGI 179 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAIS------VELEYCVDETSTPQ-----SPGM 225 EST++ ++ + + ILR G + E L A+S V +E V +S Q SPG Sbjct: 180 ESTVLLIE-KDCLTILRRGQVTEEMLIAALSMNILNHVRIETRVLSSSDIQSKAVSSPGQ 238 Query: 226 LKSHYAPRSQVRL------------RA------------IHVNPREALIRFGNVPIKNIE 261 HY+PR+ L RA + NP A ++ +V +K++ Sbjct: 239 FLRHYSPRTVCYLVMKGGPMLPGAVRATLPAHLDGFVVVLDCNPAFAELK-PDVLLKSLA 297 Query: 262 NAIIS-------LNLSKTGKLKEAAFNLFNYMKIADDSGASSI-AFSSIPNHGLGIAINN 313 + + L L+ A LF ++ AD G + I A P GL A+ + Sbjct: 298 GLLPAGTEPTRLLRAYSAPTLEAVAQGLFEALRRADRLGPACILALPPQPARGLADALLD 357 Query: 314 RLERAA 319 RL RAA Sbjct: 358 RLFRAA 363 >gi|325093106|gb|EGC46416.1| translation initiation protein Sua5 [Ajellomyces capsulatus H88] Length = 490 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 86/265 (32%), Positives = 137/265 (51%), Gaps = 36/265 (13%) Query: 8 DSNALRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 ++ L +A E L + +P+A PTETVYGL D+ A++ +Y+ K+RP+ NPLI HVS Sbjct: 57 EAKVLLEAAEALRTSDIPVAFPTETVYGLGADATRSAAVQGIYKAKQRPSDNPLIVHVSS 116 Query: 67 ISMVKK----HAS----------------------VDPLSLHLAKLFWPGPLTLVLDLLS 100 +++ H+S + P+ L FWPGPLT++L + Sbjct: 117 REQLQRLLQPHSSSPSQGGYGSRTEGSQQGGKRNFIPPIYEPLISKFWPGPLTIILPNQT 176 Query: 101 TTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSI 159 + + P T+ L+T R+P + LI PLA PSAN S + S T +H+ + + Sbjct: 177 PSPLAPEVTSTLRTFGVRMPSSPVARLLIYLADRPLAAPSANASTKPSPTTAQHVY-ADL 235 Query: 160 CKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS---VELEY---C 213 I +I+DGG +G+EST+V+ +LRPGG+ IE ++ V++ Y Sbjct: 236 QGRINMILDGGPCGVGVESTVVDGLLYPPA-VLRPGGIGIEEIRACPGWEDVQIGYKDGA 294 Query: 214 VDETSTPQSPGMLKSHYAPRSQVRL 238 + P +PGM HY+P+++V L Sbjct: 295 LQGKEVPLAPGMKYKHYSPKAKVVL 319 >gi|50290007|ref|XP_447435.1| hypothetical protein [Candida glabrata CBS 138] gi|49526745|emb|CAG60372.1| unnamed protein product [Candida glabrata] Length = 422 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 89/249 (35%), Positives = 125/249 (50%), Gaps = 24/249 (9%) Query: 10 NALRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +AL KA + D +A PTETVYGL S N ++R +Y+ K RP+ NPLI HVS I Sbjct: 51 DALLKAAHIIRDTEETVAFPTETVYGLGGSSLNDNSVRNIYKAKNRPSDNPLITHVSSID 110 Query: 69 MVKKHASVD----------PLSLH-LAKLFWPGPLTLVLDLLSTTDI--HPLSTANLKTA 115 + + D P H L + WPGPLT++L + ++ L+T + T Sbjct: 111 QLNRKIYNDYEDGDILRNIPKIYHPLIEKLWPGPLTILLPIPPERNVSLSKLTTGDQPTF 170 Query: 116 CFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174 R+P + LI P+A PSAN S + S T H+ + IPLIIDGG + Sbjct: 171 AVRIPANSIARALIALADTPIAAPSANASTRPSPTLASHVY-HDLKGRIPLIIDGGACNV 229 Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETL-------KRAISVELEYCVDETSTPQSPGMLK 227 G+EST+V+ C +LRPGG E + R VE + + E ++PGM Sbjct: 230 GVESTVVDGLCLPPA-LLRPGGFTYEDILHLGGESWRNCKVENKKTLSEGEKVRTPGMKY 288 Query: 228 SHYAPRSQV 236 HYAP ++V Sbjct: 289 KHYAPSAKV 297 >gi|327541326|gb|EGF27868.1| Translation factor, SUA5 type [Rhodopirellula baltica WH47] Length = 372 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 104/338 (30%), Positives = 157/338 (46%), Gaps = 32/338 (9%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 ++R A + L G I +PTETVYGLA P ++ +++ K+RP+ NPLI HV D S V Sbjct: 29 SIRLAGQALRDGKLIGLPTETVYGLAARGDQPDSVAKIFAAKQRPSTNPLILHVGDASAV 88 Query: 71 KKHASVDPL----SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 +D A WPGPLTLVL + + TA T RVP Sbjct: 89 HPLVVLDSAITRRRFEAASSLWPGPLTLVLP--KSEAVLDCVTAGGNTVAVRVPAHPVAL 146 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV-Q 184 +L+ P+A PSAN S +S T +H+ + + I ++DGG+ +GLEST++++ Sbjct: 147 QLLREVSLPIAAPSANVSNYVSPTRPEHV-TDGLADCIEWVLDGGVCDVGLESTVLSIAD 205 Query: 185 CEKKVRILRPGGLEIETLK--------RAISVELEYCVDETSTP-QSPGMLKSHYAPRSQ 235 ILR G L L+ A S +E + P SPG+ + HY+PR+ Sbjct: 206 PNAPPTILREGVLSATKLESVFGEPVLSASSSNMELPHPPSDAPAASPGLHRRHYSPRTP 265 Query: 236 VRL--RAIHVNPREALIRFGNVPIKNIENAIIS----LNLSKTGKLKEAAFNLFNYMKIA 289 +RL H +P +R + ++ N++ +LS G E A L+ ++ A Sbjct: 266 LRLVRETEHASPANNDLRVLRIRLRGPANSLPGYADVWSLSAVGDPLEIANRLYETLRRA 325 Query: 290 DDSGASSIAFSSI--------PNHGLGIAINNRLERAA 319 D I + N L AI++RL RA+ Sbjct: 326 DSGEFDQIEIDQMNVEDWIESGNANLIAAISDRLHRAS 363 >gi|116620704|ref|YP_822860.1| translation factor SUA5 [Candidatus Solibacter usitatus Ellin6076] gi|116223866|gb|ABJ82575.1| translation factor SUA5 [Candidatus Solibacter usitatus Ellin6076] Length = 288 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 93/307 (30%), Positives = 144/307 (46%), Gaps = 25/307 (8%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A E + G +A PTETVYGL ++ + A+ R++E K RP +PLI HV + M + + Sbjct: 4 AAELIRGGKLVAFPTETVYGLGANALDADAVARIFEAKGRPRTSPLIVHVDSVEMAQTLS 63 Query: 75 SVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132 P + LA+++WPGPLTLV + I + TA L T R+P +LI G Sbjct: 64 DDWPDTAELLARIYWPGPLTLV--VAKHPGIPDIVTAGLPTVGLRMPAHPMALELIREAG 121 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192 P+A PSANR ++S T+ HI S+ +DGG S++G+EST++++ +L Sbjct: 122 VPIAAPSANRFTELSPTSAAHI-PESLAD---FTLDGGPSQVGIESTVLSLVAGPT--LL 175 Query: 193 RPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRF 252 RPG + ++ L+ I +PGM HY P + + L + +R Sbjct: 176 RPGVIPVDELESLIGPIARGVAHVQDAHPAPGMHTRHYRPSTPLYLGEFPAEGKGVFLRI 235 Query: 253 GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAIN 312 G + + + AA L+ + D G IA P+ + Sbjct: 236 G-------------YEMPEDPRAYAAA--LYETLHHLDTEGLDWIAVEVPPDTPEWAGVL 280 Query: 313 NRLERAA 319 +RL RAA Sbjct: 281 DRLRRAA 287 >gi|307730877|ref|YP_003908101.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. CCGE1003] gi|307585412|gb|ADN58810.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. CCGE1003] Length = 357 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 103/346 (29%), Positives = 163/346 (47%), Gaps = 44/346 (12%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 ++ +T + + A LDAG +A PTETVYGL D++NP A+ R+Y K RPA +P+I Sbjct: 20 VLPVTAAQ-IEHAAALLDAGGLVAFPTETVYGLGGDAQNPDAVARIYAAKGRPANHPVIV 78 Query: 63 HVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 H++ P L FWPGPLTL+L I + + R P Sbjct: 79 HLAPQGDPGYWVEQLPQEAQRLIDAFWPGPLTLILK--RAARIPAAVSGGQDSVGLRCPS 136 Query: 122 G-FTKKLIETY-----GH-PLAIPSANRSGQISITNVKHI---LSSSICKEIPLIIDGGI 171 + L+E + GH +A PSANR G +S T +H+ ++I ++DGG Sbjct: 137 HPVAQALLEAFSALRSGHGGVAAPSANRFGHVSPTTAQHVRDEFGAAIH-----VLDGGA 191 Query: 172 SKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD--ETSTPQSPGMLKSH 229 S +G+ESTI+++ +LRPG + + + + E D + + P++ G LK+H Sbjct: 192 SDVGIESTILDL-SRGFPALLRPGRVTPQEIADVLG-EAPRLPDGSDATAPRASGTLKAH 249 Query: 230 YAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEA----------- 278 YAPR+ + L + N E L+ E + S+ G+ +A Sbjct: 250 YAPRTPLAL--LPFNALEPLL----AGRAAGERVALVARASRAGQWADAEGVHFIAAPED 303 Query: 279 ----AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 A L+ ++ D + + I +P+ IA+N+RL RAAA Sbjct: 304 PHVYARELYGLLRALDRANVARILIEKLPDTIEWIAVNDRLGRAAA 349 >gi|124265490|ref|YP_001019494.1| translation factor SUA5 [Methylibium petroleiphilum PM1] gi|124258265|gb|ABM93259.1| translation factor SUA5 [Methylibium petroleiphilum PM1] Length = 335 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 108/347 (31%), Positives = 160/347 (46%), Gaps = 56/347 (16%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV-SDIS 68 A+ +A L AG +A PTETVYGL + + A+ +++ K RP +PLI HV Sbjct: 10 EAVAEAARLLAAGHLVAFPTETVYGLGARADDDAAVAKIFAAKGRPTDHPLIVHVADAAG 69 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI---------------HPLSTANLK 113 A + PL+ L FWPG LT+++ + HP++ A L+ Sbjct: 70 AQAFAAELPPLAQRLIAAFWPGTLTVIVSRRAGVAAAASGGQPSIGLRCPSHPVAQALLR 129 Query: 114 TACFRVPCGFTKKLIETYGHP-LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172 +A G P +A PSANR G++S T H+ + ++DGG Sbjct: 130 SAA-------------ALGVPGVAGPSANRYGRVSPTRAAHVEGEFDAALV--VLDGGDC 174 Query: 173 KIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD--ETSTPQSPGMLKSHY 230 ++G+ESTIV+ V +LRPG L E ++ A L D S P++PG L SHY Sbjct: 175 EVGIESTIVDCTRGHPV-LLRPGVLPRERIEAAAGERLLDAADALAGSAPRAPGTLASHY 233 Query: 231 APRSQVRL-------RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKL-------- 275 APR+ +RL A+ V P +AL + G + A+ S ++S +L Sbjct: 234 APRATLRLMPATALRTALEVLPTDALPKRGGSRL-----AVYSRSVSPPSRLTARRMPDD 288 Query: 276 -KEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 AA LF+ ++ DD G I P + +RL+RAAAP Sbjct: 289 PAAAAHELFSVLRELDDEGVQLIWVEEPPAGPAWEGVRDRLQRAAAP 335 >gi|296157275|ref|ZP_06840111.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. Ch1-1] gi|295892611|gb|EFG72393.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. Ch1-1] Length = 346 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 99/336 (29%), Positives = 153/336 (45%), Gaps = 47/336 (13%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + A LDAG +A PTETVYGL D+ NP A+ R+Y K RPA +P+I H++ Sbjct: 19 IEHAAALLDAGELVAFPTETVYGLGGDAENPDAVARIYAAKGRPANHPVIVHLAPQGDPN 78 Query: 72 KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 P L FWPGPLTL+L I + + R P + L+E Sbjct: 79 YWVEYLPAEAQRLIDAFWPGPLTLILK--RAARIPAAVSGGQDSVGLRCPSHPVAQALLE 136 Query: 130 TY-----GH-PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + GH +A PSANR G +S T +H+ + ++DGG S +G+ESTI+++ Sbjct: 137 AFSALRSGHGGVAAPSANRFGHVSPTTAQHVRDE--FGDTIHVLDGGASDVGIESTILDL 194 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVD--ETSTPQSPGMLKSHYAPRSQVRLRAI 241 +LRPG + + + + E D + + P++ G LK+HYAPR+ + Sbjct: 195 -SRGFPALLRPGRVTPQDIADVLG-EAPRLPDGSDATAPRASGTLKAHYAPRTPL----- 247 Query: 242 HVNPREALIRFGNVPI-----KNIENAIISLNLSKTGKLKEA---------------AFN 281 AL+ FG + + E + S+ G +A A Sbjct: 248 ------ALLPFGALETLLAARQADERVALVARASRAGHWADAEGVHFIAAPEDPHVYARE 301 Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLER 317 L+ +++ D + S I +P+ IA+N+RL R Sbjct: 302 LYGLLRVLDHANVSRILIEKLPDTIEWIAVNDRLGR 337 >gi|300310011|ref|YP_003774103.1| translation factor SUA5 [Herbaspirillum seropedicae SmR1] gi|300072796|gb|ADJ62195.1| translation factor (SUA5) protein [Herbaspirillum seropedicae SmR1] Length = 347 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 104/336 (30%), Positives = 162/336 (48%), Gaps = 51/336 (15%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A L+ G +A PTETVYGL D+ NP AI +Y K RPA +P+I HVS + + A Sbjct: 19 AARTLERGGLVAFPTETVYGLGGDAENPAAIAAIYAAKGRPANHPVIVHVSPEADIGYWA 78 Query: 75 SVDPL-SLHLAKLFWPGPLTLVL-------DLLSTTD--------IHPLSTANLKTACFR 118 + P+ + L FWPGPLTL+L D ++ HP++ A L+ FR Sbjct: 79 ASVPVEARRLIASFWPGPLTLILKRAAHIPDAVAGGQDSVGVRCPAHPVAQALLRE--FR 136 Query: 119 VPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHI---LSSSICKEIPLIIDGGISKIG 175 G +A PSAN+ G +S T +H+ S + ++DGG S++G Sbjct: 137 GGKGG-----------IAGPSANKFGHVSPTTAEHVREEFGSDAGSLVDYVLDGGQSEVG 185 Query: 176 LESTIVN---VQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAP 232 +ESTIV+ + V +LRPG + E ++ + V L + S P++ G L +HYAP Sbjct: 186 IESTIVDLSRIDTHGPV-LLRPGQISAERIEAVLGVPL--ATPDASAPRASGTLDAHYAP 242 Query: 233 RSQVRLRAIHVNPRE---------ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLF 283 + V + V P E AL + + + + ++S+ + A +L+ Sbjct: 243 HTPV----VQVAPEELATVLEKLAALGKKVALIARLQRSGLVSVTRAMPDTADAYAHDLY 298 Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 ++ D +GA I ++P G +N+RL RAA Sbjct: 299 AALRDMDHTGADLIVVEALPLSGQWQGVNDRLRRAA 334 >gi|17545296|ref|NP_518698.1| hypothetical protein RSc0577 [Ralstonia solanacearum GMI1000] gi|17427588|emb|CAD14107.1| probable translation factor, sua5 type protein [Ralstonia solanacearum GMI1000] Length = 336 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 100/325 (30%), Positives = 161/325 (49%), Gaps = 26/325 (8%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +A L+AG +A PTETVYGL D+ NP AI R+Y +K RP+ +P+I HV D + + Sbjct: 16 LDEAARRLEAGELVAFPTETVYGLGADAENPQAIARIYALKGRPSNHPVIVHVVDGADLT 75 Query: 72 KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 A P ++L L + FWPGPLTL+L I + R P + L+ Sbjct: 76 YWADDVPGIALQLVEAFWPGPLTLILK--RAPHIPAAVAGGQDSVGLRCPSHPVAQALLS 133 Query: 130 TYGHP---LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV-QC 185 + +A PSAN+ GQ+S T +H+ + +++G +G+ESTIV++ + Sbjct: 134 RFKRGRGGIAAPSANKFGQVSPTTAQHVRDE--FGDAVFVLEGDGVDVGIESTIVDLSRL 191 Query: 186 EKKVR--ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 ++ V +LRPG + E + R V + + + P++ G L++HYAPR+ + L A Sbjct: 192 DQGVGPVLLRPGAITPEDIGRVTGVM--PLLPDAAAPRASGTLRAHYAPRTPLYLLAAAD 249 Query: 244 NPREALIRFGNVPI-KNIENAIISLNL-------SKTGKLKEAAFNLFNYMKIADDSGAS 295 P R +P + I ++L + A L+ ++ D G Sbjct: 250 VP----ARLAALPAGRRIVWVGAPVDLPPGCDQHAAPATPAAYANALYALLRELDRGGYH 305 Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320 +I ++P+ A+N+RL RAAA Sbjct: 306 AIWVETLPDTSAWAAVNDRLRRAAA 330 >gi|32474396|ref|NP_867390.1| translation factor [Rhodopirellula baltica SH 1] gi|32444934|emb|CAD74936.1| putative translation factor [Rhodopirellula baltica SH 1] Length = 372 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 102/339 (30%), Positives = 158/339 (46%), Gaps = 34/339 (10%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 ++R A + L G I +PTETVYGLA P ++ +++ K+RP+ NPLI HV D S V Sbjct: 29 SIRLAGQALRDGRLIGLPTETVYGLAARGDQPDSVAKIFAAKQRPSTNPLILHVGDASAV 88 Query: 71 KKHASVDPL----SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 +D A WPGPLTLVL + + TA T RVP Sbjct: 89 HPLVVLDSAITRRRFEAASSLWPGPLTLVLP--KSEAVLDCVTAGGNTVAVRVPAHPVAL 146 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV-Q 184 +L+ P+A PSAN S +S T +H+ + + + I ++DGG+ +GLEST++++ Sbjct: 147 QLLREVSLPIAAPSANVSNYVSPTRPEHV-TDGLAECIEWVLDGGVCDVGLESTVLSIAD 205 Query: 185 CEKKVRILRPGGLEIETLKRAI----------SVELEYCVDETSTPQSPGMLKSHYAPRS 234 ILR G L L+ ++EL + + SPG+ + HY+PR+ Sbjct: 206 PNAPPTILREGVLSATKLESVFGEPVLSGSSSNIELPHPPSDAPA-ASPGLHRRHYSPRT 264 Query: 235 QVRL--RAIHVNPREALIRFGNVPIKNIENAIIS----LNLSKTGKLKEAAFNLFNYMKI 288 +RL H +P +R + ++ N++ +LS G E A L+ ++ Sbjct: 265 PLRLVRETEHASPANNDLRVLRIRLRGPANSLPGYADVWSLSAVGDPLEIANRLYETLRR 324 Query: 289 ADDSGASSIAFSSI--------PNHGLGIAINNRLERAA 319 AD I + N L AI++RL RA+ Sbjct: 325 ADSGEFDQIEIDQMNVEDWIESGNANLIAAISDRLHRAS 363 >gi|300692406|ref|YP_003753401.1| hypothetical protein RPSI07_2776 [Ralstonia solanacearum PSI07] gi|299079466|emb|CBJ52141.1| conserved protein of unknown function, translation factor domain, SUA5 type [Ralstonia solanacearum PSI07] Length = 336 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 100/325 (30%), Positives = 160/325 (49%), Gaps = 26/325 (8%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +A L+AG +A PTETVYGL D+ NP AI R+Y +K RP+ +P+I HV D + + Sbjct: 16 LDEAARRLEAGELVAFPTETVYGLGADAENPQAIARIYAMKGRPSNHPVIVHVVDGADLT 75 Query: 72 KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 A P ++L L + FWPGPLTL+L I + R P + L+ Sbjct: 76 YWADDVPGIALQLVEAFWPGPLTLILK--RAPHIPAAVAGGQDSIGLRCPSHPVAQALLS 133 Query: 130 TYGHP---LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV-QC 185 + +A PSAN+ GQ+S T +H+ + +++G +G+ESTIV++ + Sbjct: 134 RFKRGRGGIAAPSANKFGQVSPTTAQHVRDE--FGDTVFVLEGDGVDVGIESTIVDLSRL 191 Query: 186 EKKVR--ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVR-LRAIH 242 ++ + +LRPG + E ++R V + + + P++ G L++HYAPR+ + L A Sbjct: 192 DEGIGPVLLRPGAITPEDIERVTGV--MPSLPDAAAPRASGTLRAHYAPRTPLYLLDAAD 249 Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIA-------DDSGAS 295 V R A + G + I ++L + A Y D G Sbjct: 250 VPARLAALPAG----QRIAWVGAPVDLPSGCDQRAAPATPAAYANALYALLRDLDRCGYH 305 Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320 +I ++P+ A+N+RL RAAA Sbjct: 306 AIWVETLPDTSAWAAVNDRLRRAAA 330 >gi|222112449|ref|YP_002554713.1| sua5/ycio/yrdc/ywlc family protein [Acidovorax ebreus TPSY] gi|221731893|gb|ACM34713.1| Sua5/YciO/YrdC/YwlC family protein [Acidovorax ebreus TPSY] Length = 332 Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 103/337 (30%), Positives = 171/337 (50%), Gaps = 45/337 (13%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 ++ A + L G + +PTETVYGLA D+ N A+ +++ K RPA +PLI HV+D + + Sbjct: 11 VQAAAQALARGELLGLPTETVYGLAADADNDAAVAQIFAAKGRPASHPLIVHVADAAAIT 70 Query: 72 KHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDI---------------HPLSTANLKTA 115 ++A PL + L FWPGPLTL+L L+ + HP++ A L+ A Sbjct: 71 RYAKEVPLFAQQLIDAFWPGPLTLILPRLAHAAVASTGGQDSVGLRCPAHPVAHAVLQ-A 129 Query: 116 CFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 C R +E +A PSAN G++S T +H+ + ++ L++DGG +G Sbjct: 130 CQR---------LEPPVWGVAAPSANHFGRVSPTTAQHV-AEEFGDDL-LVLDGGACTVG 178 Query: 176 LESTIVNVQCEKKVRI-LRPGGLEIETLKRAISVELEYCVDETS--TPQSPGMLKSHYAP 232 +ESTI++ C + V + LRPG + E ++RA + +E TP++ G L +HYAP Sbjct: 179 IESTIID--CTRGVPVLLRPGAISREDVQRACG-QRPLSKEELPALTPRASGTLLAHYAP 235 Query: 233 RSQVRL-------RAIHVNPREA--LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLF 283 ++VRL + V +A + + P++ + I+ + A LF Sbjct: 236 TARVRLMDAKQLQAGLDVLGADAAHIAVYARAPLRAASSKILVRRMPDDA--AATAQQLF 293 Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ D++G I + P+ + +RL+RAAA Sbjct: 294 AALRGFDEAGVKLIWIETPPDAPAWEGVRDRLQRAAA 330 >gi|260655498|ref|ZP_05860986.1| Sua5/YciO/YrdC/YwlC protein [Jonquetella anthropi E3_33 E1] gi|260629946|gb|EEX48140.1| Sua5/YciO/YrdC/YwlC protein [Jonquetella anthropi E3_33 E1] Length = 319 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 85/233 (36%), Positives = 120/233 (51%), Gaps = 8/233 (3%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L +A + L G +A PTETVYGL + + A +R+Y K RP+ NPLI H Sbjct: 13 DRAVLNRAVKLLSDGRLVAFPTETVYGLGGNGWDSEAAKRIYAAKGRPSDNPLILHFPSP 72 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLST-ANLKTACFRVPCGFT-K 125 V+ A V + L FWPGPLTLV L I PL+ L T R+P T + Sbjct: 73 EAVELSADVSDRAKKLMARFWPGPLTLV---LPAKPIVPLAVRGGLDTVGCRMPSHPTAR 129 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 L+ PLA PSAN SG+ S T+ + + + + L+ID G +GLEST++++ Sbjct: 130 ALLSACPFPLAAPSANVSGRPSPTDAATV-AQDLNGRVDLVIDSGPCSVGLESTVLDITG 188 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238 + V +LRPGG+ +E L+ + + + +SPG HYAP V L Sbjct: 189 DAPV-LLRPGGVSLEELESVLG-PVAFPRGALELRRSPGTRYRHYAPAVAVLL 239 >gi|310790728|gb|EFQ26261.1| yrdC domain-containing protein [Glomerella graminicola M1.001] Length = 448 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 90/251 (35%), Positives = 136/251 (54%), Gaps = 26/251 (10%) Query: 12 LRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 LR A E++ P+A PTETVYGL D+ A++ ++ K RP+ NPLI HV D+ M+ Sbjct: 42 LRDAAEYMRTQDTPVAFPTETVYGLGADATRSGAVKGIFSAKGRPSDNPLISHVCDLDML 101 Query: 71 KK-------------HASVDP---LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT 114 + A DP + L + FWPGPLT++L + + P TA L++ Sbjct: 102 RGLLRPERQTMHGDVAAETDPIPEIYKPLIEKFWPGPLTILLRNPEPSKLAPEVTAGLES 161 Query: 115 ACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173 R+P LI+ PLA PSAN S + S T +H+ + I LI+DGG + Sbjct: 162 FGVRMPSSPLALTLIKLAAAPLAAPSANASTKPSPTTAQHVY-HDLEGRIGLILDGGACQ 220 Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVE--LEYCVDETST----PQSPGMLK 227 +G+EST+V+ C+ V +LRPGG+ +E L+ E ++ D + T P++PGM Sbjct: 221 VGVESTVVDGLCDPPV-VLRPGGVSMEELRSCAGWEGVVKAYKDASETGRSAPRAPGMKY 279 Query: 228 SHYAPRSQVRL 238 HY+P+++V L Sbjct: 280 KHYSPKAKVVL 290 >gi|221211360|ref|ZP_03584339.1| Sua5/YciO/YrdC family protein [Burkholderia multivorans CGD1] gi|221168721|gb|EEE01189.1| Sua5/YciO/YrdC family protein [Burkholderia multivorans CGD1] Length = 342 Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 102/335 (30%), Positives = 157/335 (46%), Gaps = 44/335 (13%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A LDAG +A PTETVYGL D+ +P A+ R+Y K RPA +P+I H+ A Sbjct: 17 AAALLDAGQLVAFPTETVYGLGGDAASPDAVARIYAAKGRPANHPVIVHLPPGGDPAYWA 76 Query: 75 SVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHP----LSTANLKTACFRVPCG-FTKKLI 128 + P L FWPGPLTL+L HP + + R P + L+ Sbjct: 77 AELPADAQKLIDAFWPGPLTLILKR------HPRIPDAVSGGQDSVGLRCPSHPVAQALL 130 Query: 129 ETY-----GH-PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 + GH +A PSANR G +S T +H+ + ++DGG S++G+ESTI++ Sbjct: 131 AAFSARRGGHGGVAAPSANRFGHVSPTTAQHVRDE--FGDTVHVLDGGASEVGIESTILD 188 Query: 183 VQCEKKVRILRPGGLEIETLKRAI--SVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 + +LRPG + + + + + L D T+ P++ G LK+HYAPR+ + L Sbjct: 189 L-SRGFPALLRPGHVTPQQIADVLGRAPRLPDGSDATA-PRASGTLKAHYAPRTPLALL- 245 Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEA---------------AFNLFNY 285 P +AL + E + S+ G+ +A A +L+ Sbjct: 246 ----PFDALEPLLAAAQADGERVALVARASRAGRWAQADGVHFVAAPEDPQAYARDLYGM 301 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ D + + I +P IA+N+RL RAAA Sbjct: 302 LRALDRAQVARILVEKLPETVEWIAVNDRLGRAAA 336 >gi|229823148|ref|ZP_04449217.1| hypothetical protein GCWU000282_00445 [Catonella morbi ATCC 51271] gi|229787314|gb|EEP23428.1| hypothetical protein GCWU000282_00445 [Catonella morbi ATCC 51271] Length = 340 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 86/235 (36%), Positives = 129/235 (54%), Gaps = 12/235 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +A L G +A PTETVYGL + A+ ++++ K RP+ NPLI HV D V Sbjct: 11 LDEAAALLRRGELVAFPTETVYGLGAIATKEQAVAKVFQAKGRPSDNPLIVHVKDAQQVL 70 Query: 72 KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK-TACFRVPCGFTK-KLI 128 +A+ P L+ L + FWPGPLT++L + + P + N + T FR+P + +LI Sbjct: 71 DYAAEVPELAKELMERFWPGPLTIILPV--KPGVFPANVNNGQDTVAFRMPNQQSALRLI 128 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI--SKIGLESTIVNVQCE 186 + G PL PSAN SG+ S T+V H++ I ++ G ++IG+EST+V + Sbjct: 129 DLVGTPLVGPSANLSGKPSPTSVDHVM-QDFDGLIAGVVAGDTDQAQIGVESTVVRPMAD 187 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDET-STP--QSPGMLKSHYAPRSQVRL 238 + V ILRPG + L + E+ V E + P QSPG+ HY+P+ +V L Sbjct: 188 RLV-ILRPGAITQSMLAQVCPNVQEFSVAEQLAAPHLQSPGVKYRHYSPKQEVYL 241 >gi|217076581|ref|YP_002334297.1| universally conserved protein [Thermosipho africanus TCF52B] gi|217036434|gb|ACJ74956.1| universally conserved protein [Thermosipho africanus TCF52B] Length = 337 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 105/329 (31%), Positives = 161/329 (48%), Gaps = 35/329 (10%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L + C + +G +A PTETVYGL + A+ ++++K R NPLI HV + Sbjct: 18 LIEVCNVIKSGGLVAFPTETVYGLGASAFEEKAVDNIFKVKGRAKDNPLIVHVDRFEKLL 77 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 + A V PGP+T VL ++ TA LKT R+P +KL + Sbjct: 78 EIAEVAEKYFEAINKLTPGPVTFVLK--QKINLPKNVTAGLKTVGVRIPAHPVARKLCKC 135 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G P+A PSAN SG+ S T+ + ++ K I IID G S+ GLESTI+++ E + Sbjct: 136 AG-PIAAPSANLSGKPSPTDSQAVIEDLFGK-IDFIIDAGNSEFGLESTIIDLTSEIPI- 192 Query: 191 ILRPGGLEIETLKRAIS-VEL-EYCVDETST--PQSPGMLKSHYAPRSQV-RLRAIHVNP 245 +LRPG + IE L+ VE+ ++ +D +S P++PGM HYAP V R + Sbjct: 193 VLRPGPITIEQLESIFGKVEIPQFVIDASSVENPKAPGMKYRHYAPEKPVYRFNKVQ--- 249 Query: 246 REALIRFGNVPIKNI-ENAII-----------SLNLSKTGKLKEA---AFNLFNYMKIAD 290 RE +I+ K + EN + + GKL E A NLF ++ D Sbjct: 250 REKVIK------KALSENGVFICPEEHKKFYPDDRIMILGKLSEPYSIAQNLFKVLREFD 303 Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAA 319 S + + G+ +++ NRL++A+ Sbjct: 304 RSNFNVAFIEAFEEKGILLSVMNRLKKAS 332 >gi|322500549|emb|CBZ35626.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 386 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 110/366 (30%), Positives = 168/366 (45%), Gaps = 57/366 (15%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 T LR+A + L G +AIPTETVYGL ++ +A++ +Y +K RP +PLICHV Sbjct: 7 TSPEDLRRAADALVQGKLVAIPTETVYGLGGNALIGSAVKSIYAVKGRPPTDPLICHVYT 66 Query: 67 ISMVKK-------HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 + +K +V+ L+ + WPGPLT+V T + T R+ Sbjct: 67 LDGARKLWDLKWDEGAVE-LACTIGAALWPGPLTIVCKASPT--LPDCVTGGSGYVGARI 123 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP-LIIDGGISKIGLE 177 P T KL+E P+A PSAN G +S T +H+ ++ LIIDGG S IG+E Sbjct: 124 PNNPITLKLLEMADVPVAAPSANTFGHVSPTTAQHVYDDLAARDPELLIIDGGQSAIGIE 183 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAIS-------VEL---EYCVDETSTPQ-SPGML 226 ST+ V+ V +LR G + + + RAI+ VE+ D P SPG L Sbjct: 184 STVAKVEANDLVVVLRRGCITVSMIHRAIADRYPQTRVEIRDTRIMCDPAKAPMVSPGQL 243 Query: 227 KSHYAPRSQVRLRAIHVNPREALIRFGNVPI-----KNI----ENAIISLN--------- 268 +HY+P L + AL +VP+ K++ E ++ N Sbjct: 244 LTHYSPHVPSSL--LTPGSLAALTASADVPVYVHRGKDVVPLCETVVLDFNGYLSRFRDT 301 Query: 269 ------LSKTGKLKEAAFNLFNYMKIADD-SGASSIAF---SSIPN----HGLGIAINNR 314 +S G +E + +F+ ++ + GA + F S P+ L A+ +R Sbjct: 302 CLFYHDMSPDGNPEEGCYAVFDALRATETIKGAKGLVFPLISEWPHDKAKEDLLTAMEDR 361 Query: 315 LERAAA 320 L RAA+ Sbjct: 362 LFRAAS 367 >gi|253744903|gb|EET01038.1| SUA5 protein [Giardia intestinalis ATCC 50581] Length = 370 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 116/365 (31%), Positives = 171/365 (46%), Gaps = 54/365 (14%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 T + L +A + G +AIPTETVYGLA D+ + TA +++ +K+RPA +PLI H+S Sbjct: 8 TTQSELIEAAGAIQCGELVAIPTETVYGLAADALSNTACAKIFALKRRPANDPLIVHISS 67 Query: 67 ISMVKKHA--SVD--PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 +S + A SVD P+ LA FWPGPLT+VL + + TA +T R+P Sbjct: 68 VSQLSMVAVLSVDLSPIVDILATAFWPGPLTMVLP--AAPCVPSTVTAGSQTIGVRMPRH 125 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 + +IE PLA PSAN G IS T + + + I ++ LIIDGG +G+EST++ Sbjct: 126 SVARTIIELAARPLAAPSANMFGSISPTRAEDVATEFIESDL-LIIDGGPCNVGIESTVL 184 Query: 182 NVQCEKKVRILRPGG-----LEIETLKRAIS-VELEYCVDETSTPQ------SPGMLKSH 229 + E + ILR G LE ++ A+S V +E S+ Q SPG H Sbjct: 185 LI-AEBCLTILRRGQVTEQMLEAVLMENALSHVRIEARALSMSSIQANEVVPSPGQFLRH 243 Query: 230 YAPRS--------------------QVRLRAI-----------HVNPREALIRFGNVPIK 258 Y+P++ RL + P R ++ + Sbjct: 244 YSPQTPCYLVMKGGPALPGAVRTTLPARLNGFVMVLDCNPALAELGPDAIFTRLADILPE 303 Query: 259 NIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIA-FSSIPNHGLGIAINNRLER 317 E A + L + L+ A LF ++ D G + I P GL A+ +RL R Sbjct: 304 GTEPAQL-LRVYSAPTLEAVAQGLFGALRQVDRLGPACILILPPEPVRGLAGALLDRLFR 362 Query: 318 AAAPR 322 AA+ R Sbjct: 363 AASGR 367 >gi|121596222|ref|YP_988118.1| translation factor SUA5 [Acidovorax sp. JS42] gi|120608302|gb|ABM44042.1| translation factor SUA5 [Acidovorax sp. JS42] Length = 332 Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 103/337 (30%), Positives = 170/337 (50%), Gaps = 45/337 (13%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 ++ A + L G + +PTETVYGLA D+ N A+ +++ K RPA +PLI HV+D + + Sbjct: 11 VQAAAQALARGELLGLPTETVYGLAADADNDAAVAQIFAAKGRPASHPLIVHVADAAAIT 70 Query: 72 KHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDI---------------HPLSTANLKTA 115 ++A PL + L FWPGPLTL+L L + HP++ A L+ A Sbjct: 71 RYAKEVPLFAQQLIDAFWPGPLTLILPRLPHAAVASTGGQDSVGLRCPAHPVAHAVLQ-A 129 Query: 116 CFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 C R +E +A PSAN G++S T +H+ + ++ L++DGG +G Sbjct: 130 CQR---------LEPPVWGVAAPSANHFGRVSPTTAQHV-AEEFGDDL-LVLDGGACTVG 178 Query: 176 LESTIVNVQCEKKVRI-LRPGGLEIETLKRAISVELEYCVDETS--TPQSPGMLKSHYAP 232 +ESTI++ C + V + LRPG + E ++RA + +E TP++ G L +HYAP Sbjct: 179 IESTIID--CTRGVPVLLRPGAISREDVQRACG-QRPLSKEELPALTPRASGTLLAHYAP 235 Query: 233 RSQVRL-------RAIHVNPREA--LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLF 283 ++VRL + V +A + + P++ + I+ + A LF Sbjct: 236 TARVRLMDAKQLQAGLDVLGADAAHIAVYARAPLRAASSKILVRRMPDDA--AATAQQLF 293 Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ D++G I + P+ + +RL+RAAA Sbjct: 294 AALRGFDEAGVKLIWIETPPDAPAWEGVRDRLQRAAA 330 >gi|116328292|ref|YP_798012.1| Sua5 family translation factor [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331018|ref|YP_800736.1| Sua5 family translation factor [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121036|gb|ABJ79079.1| Translation factor, SUA5 family [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124707|gb|ABJ75978.1| Translation factor, SUA5 family [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 314 Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 101/323 (31%), Positives = 164/323 (50%), Gaps = 27/323 (8%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 ITDS +A + L G + PTETVYG+ + + A +++YE+K RP NPLI HV Sbjct: 10 ITDSPL--EAAKILLEGGNVVFPTETVYGIGASAFDFKACKKIYEVKNRPFDNPLILHVE 67 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125 ++S +K + ++ + + + F PGP+T + T L TA L T R+P T Sbjct: 68 NLSSLKTYGNISEKAGLVFQNFSPGPITGIF----TKKNQDLFTAGLNTVALRIPSNPTT 123 Query: 126 KL-IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 +L + G P+A PSAN SG+ S+T +++IL + I+ G KIG+EST+++ Sbjct: 124 QLFLNLCGVPVAAPSANLSGKPSLTKIEYIL-EEFSGRVDCILKGEEPKIGIESTVIDFS 182 Query: 185 CEKKVRILRPGGLEIETLKRAIS--VELEYCVDETSTPQSPGMLKSHYAPRSQV----RL 238 E V +LRPG ++ L + + +E + P+SPG+ HYAP +V L Sbjct: 183 SEPPV-LLRPGFVDRNDLLKILPDLKGIESFNELNKIPRSPGLKYRHYAPACKVVLKDSL 241 Query: 239 RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIA 298 + I N + F + + I ++S N +E +++++ D G A Sbjct: 242 KGISGNFAQIGFHFESESMFQI---LVSSN-------EEYMKSIYSFFVECDRKGIKE-A 290 Query: 299 FSSIPNHGLGI-AINNRLERAAA 320 + IP G G A+ NR+ +AA+ Sbjct: 291 WCEIPKDGNGKEALINRISKAAS 313 >gi|327348880|gb|EGE77737.1| SUA5 [Ajellomyces dermatitidis ATCC 18188] Length = 490 Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 85/265 (32%), Positives = 134/265 (50%), Gaps = 36/265 (13%) Query: 8 DSNALRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 ++ L +A E L + +P+A PTETVYGL D+ A++ +Y+ K+RP+ NPLI HVS Sbjct: 57 EAKVLLEAAEALRTSDIPVAFPTETVYGLGADATRSAAVQGIYKAKQRPSDNPLIVHVSS 116 Query: 67 ISMVKK-------------------------HASVDPLSLH-LAKLFWPGPLTLVLDLLS 100 +++ ++ PL L FWPGPLT++L + Sbjct: 117 REQLQRLLLSPSDSLRDGKSDSGTKRSQQGGETNLIPLIYEPLISRFWPGPLTIILPNPT 176 Query: 101 TTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSI 159 + + P T+ L T R+P + LI PLA PSAN S + S T +H+ + + Sbjct: 177 PSPLAPEVTSTLPTFGVRMPSSPLARLLIYLADRPLAAPSANASTKPSPTTAQHVY-TDL 235 Query: 160 CKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVE------LEYC 213 I +I+DGG S +G+EST+V+ +LRPGG+ IE ++ E + Sbjct: 236 QGRIDMILDGGPSGVGVESTVVDGLLYPPA-VLRPGGIGIEEIRACPGWEEVRIGYKDGA 294 Query: 214 VDETSTPQSPGMLKSHYAPRSQVRL 238 + P++PGM HY+P+++V L Sbjct: 295 LQGKEVPRAPGMKYKHYSPKAKVVL 319 >gi|261195106|ref|XP_002623957.1| SUA5 [Ajellomyces dermatitidis SLH14081] gi|239587829|gb|EEQ70472.1| SUA5 [Ajellomyces dermatitidis SLH14081] Length = 490 Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 85/265 (32%), Positives = 134/265 (50%), Gaps = 36/265 (13%) Query: 8 DSNALRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 ++ L +A E L + +P+A PTETVYGL D+ A++ +Y+ K+RP+ NPLI HVS Sbjct: 57 EAKVLLEAAEALRTSDIPVAFPTETVYGLGADATRSAAVQGIYKAKQRPSDNPLIVHVSS 116 Query: 67 ISMVKK-------------------------HASVDPLSLH-LAKLFWPGPLTLVLDLLS 100 +++ ++ PL L FWPGPLT++L + Sbjct: 117 REQLQRLLLSPSDSLRDGKSDSGTKRSQQGGETNLIPLIYEPLISRFWPGPLTIILPNPT 176 Query: 101 TTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSI 159 + + P T+ L T R+P + LI PLA PSAN S + S T +H+ + + Sbjct: 177 PSPLAPEVTSTLPTFGVRMPSSPLARLLIYLADRPLAAPSANASTKPSPTTAQHVY-TDL 235 Query: 160 CKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVE------LEYC 213 I +I+DGG S +G+EST+V+ +LRPGG+ IE ++ E + Sbjct: 236 QGRIDMILDGGPSGVGVESTVVDGLLYPPA-VLRPGGIGIEEIRACPGWEEVRIGYKDGA 294 Query: 214 VDETSTPQSPGMLKSHYAPRSQVRL 238 + P++PGM HY+P+++V L Sbjct: 295 LQGKEVPRAPGMKYKHYSPKAKVVL 319 >gi|228474930|ref|ZP_04059659.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus hominis SK119] gi|228271162|gb|EEK12542.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus hominis SK119] Length = 346 Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 100/329 (30%), Positives = 159/329 (48%), Gaps = 21/329 (6%) Query: 8 DSNALRKACE----FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 DS + E + + GL IAIPTETVYGL +++N A+ +Y+ K RP+ NPLI H Sbjct: 14 DSQMFSQLAEIKTIYENGGL-IAIPTETVYGLGANAKNEQAVENIYKAKGRPSDNPLIVH 72 Query: 64 VSDISMVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 + S + S P + L FWPGP++ +L L + T L + R+P Sbjct: 73 IYKQSQMDAFVSTIPKEVKKLMNAFWPGPISFILPLKQGYLCEKV-TGGLNSIAVRMPSH 131 Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 + ++E P+A PSAN SG+ S T +H+ + + +I I++G S+ GLEST++ Sbjct: 132 PIGRAILEYVDLPIAAPSANISGRTSPTTFQHVY-NDLNGKIDGIVNGDQSEEGLESTVL 190 Query: 182 NVQCEKKVRILRPGGLEIETLKRAI--SVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 + + RI RPG + L + SV ++Y ++ P +PGM HYAP++ V + Sbjct: 191 DC-TQFPFRIARPGSITQTMLNHVVPHSV-IQYDYNQLERPIAPGMKYKHYAPKTPVYML 248 Query: 240 AIHVNPREALIRFGNVPI------KNIENAIISLNLSKTGK-LKEAAFNLFNYMKIADDS 292 P L G + K + I ++L + + +K A NL+ + DD Sbjct: 249 TEFTQPISELNESGLAFVLPSSMKKYVPKDCIFISLCENQRDVKGANHNLYKILHDIDDD 308 Query: 293 GASSIAF-SSIPNHGLGIAINNRLERAAA 320 AF + N A+ NR+ +A Sbjct: 309 ERIQKAFIYTFDNIEGSEAVMNRMMKATG 337 >gi|89899013|ref|YP_521484.1| Sua5/YciO/YrdC/YwlC [Rhodoferax ferrireducens T118] gi|89343750|gb|ABD67953.1| translation factor SUA5 [Rhodoferax ferrireducens T118] Length = 389 Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 83/249 (33%), Positives = 127/249 (51%), Gaps = 34/249 (13%) Query: 21 AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP-L 79 AG + +PTETVYGLA D+ N TA+ +++ K RPA +PLI HV D V A+ P Sbjct: 20 AGGLLGLPTETVYGLAADAENDTAVAQIFTAKGRPADHPLIVHVRDAVCVGHFAAQVPDF 79 Query: 80 SLHLAKLFWPGPLTLVLDL---LSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGH--- 133 + L + FWPGPLTL+L +++ T L+ V + L++ G Sbjct: 80 ADRLMQAFWPGPLTLILPRRPGVASAAAGGQDTIGLRCPSHPVAQMLLQALLQNGGQNPT 139 Query: 134 --------------------PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173 +A PSAN+ G++S T H+ S ++ LI+DGG Sbjct: 140 HSESAKPQAKELASQPHGVWGIAAPSANQFGRVSPTTAAHV-QSEFGPDL-LILDGGACT 197 Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL----EYCVDETSTPQSPGMLKSH 229 +G+ESTI++ + V +LRPG + E ++ A +++ E D P++ G L+SH Sbjct: 198 VGIESTIIDCTRGQPV-LLRPGAITREQVQAACGLKVLLKDELATDAAPAPKASGTLESH 256 Query: 230 YAPRSQVRL 238 YAP++ VRL Sbjct: 257 YAPKATVRL 265 >gi|78189525|ref|YP_379863.1| Sua5/YciO/YrdC/YwlC [Chlorobium chlorochromatii CaD3] gi|78171724|gb|ABB28820.1| translation factor SUA5 [Chlorobium chlorochromatii CaD3] Length = 324 Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 100/323 (30%), Positives = 156/323 (48%), Gaps = 21/323 (6%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 +TDS A +A L+ G +A PTETVYGL + A+++++ K RP+ NPLI H++ Sbjct: 13 LTDSPA--EAAALLNGGKIVAFPTETVYGLGATINHSEALKQIFVAKGRPSDNPLILHIA 70 Query: 66 DISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 + K A+ P + + F+PGPLTLVL + L TA L++ R P Sbjct: 71 HPDNIGKVAATVPRYAERFIEKFFPGPLTLVLP--KQPQVPELVTAGLQSVGVRCPAHPM 128 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + L+ P+A PSANRSG+ S T+ + + + I ++ IGLESTIV+ Sbjct: 129 AQALLALVNSPVAAPSANRSGKPSATSWETVY-DDLNGRIDGLLRSAPCTIGLESTIVDC 187 Query: 184 QCEKKVRILRPGGLEIETLKRAI-SVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242 + +LR G + +E L+ + S+ + P+SPG+ HYAP + + L A+ Sbjct: 188 TANTPL-LLRAGAITLEQLQAVVPSLRVNQPTHNNEPPKSPGLKYPHYAPHATIELLAVG 246 Query: 243 -----VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297 + P A I G P N ++ + ++ LF + + D +I Sbjct: 247 AVPLTLPPNSAYI--GIAPPPNGATLVM-----QCASIEAYGNALFQFFRTCDAHAIRTI 299 Query: 298 AFSSIPNHGLGIAINNRLERAAA 320 + GLG AI +RL RAA Sbjct: 300 YCELPTSDGLGRAIGDRLLRAAG 322 >gi|260891996|ref|YP_003238093.1| Sua5/YciO/YrdC/YwlC family protein [Ammonifex degensii KC4] gi|260864137|gb|ACX51243.1| Sua5/YciO/YrdC/YwlC family protein [Ammonifex degensii KC4] Length = 338 Score = 122 bits (306), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 73/184 (39%), Positives = 107/184 (58%), Gaps = 5/184 (2%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 +S AL +A E L G +A PTETVYGL + A+RR++ +K RPA PL H++D Sbjct: 14 ESLALEEAGELLRRGELVAFPTETVYGLGAAATQDEALRRVFAVKGRPARKPLTLHLADP 73 Query: 68 SMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTK 125 V ++ P + L FWPGPLTL+L + + + P TA +T RVP + Sbjct: 74 EEVFRYVKEVPSTARRLISSFWPGPLTLILP--AASGLPPSLTAGGETVGIRVPDHAVAQ 131 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +LI G PLA PSAN SG+ + T H+L + + +I ++DGG + +G+EST+V V+ Sbjct: 132 ELIRMAGLPLAAPSANLSGRPAPTKAAHVL-AELGGKIAGVLDGGPTPLGIESTVVEVRG 190 Query: 186 EKKV 189 E+ V Sbjct: 191 EELV 194 >gi|186475233|ref|YP_001856703.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia phymatum STM815] gi|184191692|gb|ACC69657.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia phymatum STM815] Length = 347 Score = 122 bits (306), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 103/344 (29%), Positives = 159/344 (46%), Gaps = 43/344 (12%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 + S ++ + A LDAG +A PTETVYGL D+ +P AI R+Y K RP+ +P+I Sbjct: 9 DVASSVGADEIAHAAAMLDAGQLVAFPTETVYGLGGDAESPDAIARIYAAKGRPSNHPVI 68 Query: 62 CHVS---DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 H++ D + D + L FWPGPLTL+L I + + R Sbjct: 69 VHLAPNGDPNYWVAQLPSD--AQRLIDAFWPGPLTLILK--RAAHIPAAVSGGQDSVGLR 124 Query: 119 VPCG-FTKKLIETY-----GH-PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171 P + L+ + GH +A PSANR G +S T +H+ + ++DGG Sbjct: 125 CPSHPVAQSLLTAFSALRNGHGGVAAPSANRFGHVSPTTAQHVREE--FGDAIHVLDGGP 182 Query: 172 SKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD--ETSTPQSPGMLKSH 229 S +G+ESTIV++ +LRPG + + + + E+ D + S P++ G LK+H Sbjct: 183 SDVGIESTIVDL-SRGFPALLRPGHVTPQDIADVLG-EMPRLPDGSDASAPRASGTLKAH 240 Query: 230 YAPRSQVRLRAIHV-NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEA---------- 278 YAPR+ + L V P A G E + S+ G+ EA Sbjct: 241 YAPRTPLALLPFDVLEPLLAARAPG-------ERVALVARASRAGRWAEAQGVHFVAAPE 293 Query: 279 -----AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLER 317 A +L+ ++ D + S I +P+ IA+N+RL R Sbjct: 294 DPHLYARDLYGLLRALDRANVSRILIEKLPDTIEWIAVNDRLGR 337 >gi|332525423|ref|ZP_08401583.1| Sua5/YciO/YrdC/YwlC family protein [Rubrivivax benzoatilyticus JA2] gi|332108692|gb|EGJ09916.1| Sua5/YciO/YrdC/YwlC family protein [Rubrivivax benzoatilyticus JA2] Length = 323 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 80/242 (33%), Positives = 122/242 (50%), Gaps = 9/242 (3%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I+ T ++ A E L G +A PTETVYGL + A ++ +K RP +PL Sbjct: 1 MPILDGTKPASITSAAERLRDGGLVAFPTETVYGLGARADRDVATAAVFAVKGRPDDHPL 60 Query: 61 ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPLSTANLKTAC 116 I HV+D + V + A P++ L FWPGPLTL+L + T L+ Sbjct: 61 IVHVADAAAVTEFAEPPGPVAQALMARFWPGPLTLILRRREGRGEAAAGGQDTIGLRLPS 120 Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 V ++ +A PSANR G++S T H++ + LI+DGG ++G+ Sbjct: 121 HPVALALLREAARLGVPGVAAPSANRFGRVSPTTAAHVVGE--FGDGLLIVDGGACEVGI 178 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQV 236 ES IV+ E+ +LRPG L+ ++ I L +P++ G L+SHYAP +++ Sbjct: 179 ESAIVDCSGERPA-LLRPGALDRREIEAVIGAPLAAA--GADSPRASGTLESHYAPAARI 235 Query: 237 RL 238 RL Sbjct: 236 RL 237 >gi|239610683|gb|EEQ87670.1| SUA5 [Ajellomyces dermatitidis ER-3] Length = 489 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 85/264 (32%), Positives = 133/264 (50%), Gaps = 35/264 (13%) Query: 8 DSNALRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 ++ L +A E L + +P+A PTETVYGL D+ A++ +Y+ K+RP+ NPLI HVS Sbjct: 57 EAKVLLEAAEALRTSDIPVAFPTETVYGLGADATRSAAVQGIYKAKQRPSDNPLIVHVSS 116 Query: 67 ISMVK------------------------KHASVDPLSLH-LAKLFWPGPLTLVLDLLST 101 ++ ++ PL L FWPGPLT++L + Sbjct: 117 REQLRLLLSPSDSLRDGKSDSGTKRSQQGGETNLIPLIYEPLISRFWPGPLTIILPNPTP 176 Query: 102 TDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSIC 160 + + P T+ L T R+P + LI PLA PSAN S + S T +H+ + + Sbjct: 177 SPLAPEVTSTLPTFGVRMPSSPLARLLIYLADRPLAAPSANASTKPSPTTAQHVY-TDLQ 235 Query: 161 KEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVE------LEYCV 214 I +I+DGG S +G+EST+V+ +LRPGG+ IE ++ E + + Sbjct: 236 GRIDMILDGGPSGVGVESTVVDGLLYPPA-VLRPGGIGIEEIRACPGWEEVRIGYKDGAL 294 Query: 215 DETSTPQSPGMLKSHYAPRSQVRL 238 P++PGM HY+P+++V L Sbjct: 295 QGKEVPRAPGMKYKHYSPKAKVVL 318 >gi|320107104|ref|YP_004182694.1| Sua5/YciO/YrdC/YwlC family protein [Terriglobus saanensis SP1PR4] gi|319925625|gb|ADV82700.1| Sua5/YciO/YrdC/YwlC family protein [Terriglobus saanensis SP1PR4] Length = 340 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 106/337 (31%), Positives = 163/337 (48%), Gaps = 44/337 (13%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +A L G +A PTETVYGL ++ + A+ +++ K+RP +PLI H+S + ++ Sbjct: 16 LDRAATILREGGTVAFPTETVYGLGANALDAAAVEKIFAAKQRPHWDPLIVHLSSLEILS 75 Query: 72 K-HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKKLI 128 +S+ + L + FWPGPLTL LL+ PL+ TA + R+P LI Sbjct: 76 AIVSSISARARLLMEAFWPGPLTL---LLARNPALPLAVTAGRELVGVRMPAHPMALDLI 132 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 G P+A PSAN G +S T+ H+L + I I+DGG + +G+EST+++ Sbjct: 133 RRAGVPVAAPSANLFGHVSPTSAAHVL-EDLDGAIDAIVDGGSTSVGVESTVLDPNTSPM 191 Query: 189 VRILRPGGLEIETLKRAISVELEYCVDET-------STPQSPGMLKSHYAPRSQVRLRAI 241 + + RPG + +E + + Y +T S P SPG+ HYAPR++V L Sbjct: 192 M-LYRPGAITLEQIVAVAGPTVRYQPVDTLDGAKHESLP-SPGIGIRHYAPRARVVL--- 246 Query: 242 HVNPREALIRF----------------GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNY 285 V + L R +P ++IE A+I + + T L A LF Sbjct: 247 -VQDEDELHRIFQQMKTERVGVLLPTEWKIPSQSIE-AVIWGSWNDTTAL---AHTLFEG 301 Query: 286 MKIADDSGASSIAFSSIPNHG---LGIAINNRLERAA 319 ++ D G I +P G L AI +RL +AA Sbjct: 302 LRTLDTRGV-EIILCPLPREGSGPLAEAIRDRLMKAA 337 >gi|196232003|ref|ZP_03130859.1| Sua5/YciO/YrdC/YwlC family protein [Chthoniobacter flavus Ellin428] gi|196224125|gb|EDY18639.1| Sua5/YciO/YrdC/YwlC family protein [Chthoniobacter flavus Ellin428] Length = 203 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 72/168 (42%), Positives = 98/168 (58%), Gaps = 10/168 (5%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81 G P+ +PTETVYGLA D+ P A+ ++E K+RP +PLI H+ + + ++ S Sbjct: 28 GQPVGLPTETVYGLAADALRPEAVAEVFEAKERPFFDPLIVHLPSRDWLDRVTNIPAESR 87 Query: 82 HLAKL----FWPGPLTLVLD-LLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPL 135 + + FWPGPLTLVL L DI T+ L T R+ + ++E YGHPL Sbjct: 88 AMVEALITKFWPGPLTLVLPRQLVVPDI---VTSGLDTVAVRMSAHPVFRAVVEHYGHPL 144 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 A PSANR G IS T H+ S + IPLI+DGG ++ G+ESTIV V Sbjct: 145 AAPSANRFGHISPTTASHV-RSELHGRIPLIVDGGPTQHGVESTIVKV 191 >gi|319764783|ref|YP_004128720.1| sua5/ycio/yrdc/ywlc family protein [Alicycliphilus denitrificans BC] gi|317119344|gb|ADV01833.1| Sua5/YciO/YrdC/YwlC family protein [Alicycliphilus denitrificans BC] Length = 332 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 109/339 (32%), Positives = 171/339 (50%), Gaps = 31/339 (9%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 I+ T ++++ A L G + +PTETVYGLA D+ N A+ R++ K RPA +PLI Sbjct: 2 ILDGTLPSSVQAAARLLARGELLGLPTETVYGLAADADNDAAVARIFAAKGRPANHPLIV 61 Query: 63 HVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 HV+D + + +A PL + L FWPGPLTL+L L ST + R P Sbjct: 62 HVADSTAITHYAKEVPLFAQQLIDAFWPGPLTLILPRLPAAAR--ASTGGQDSVGLRCPA 119 Query: 122 GFTKKLI---------ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172 + +G +A PSAN G++S T +H+ + + E+ L++DGG Sbjct: 120 HPVAHAVLAACQRLDPPVWG--VAAPSANHFGKVSPTTAQHV-ADAFGDEL-LVLDGGAC 175 Query: 173 KIGLESTIVNVQCEKKVRI-LRPGGLEIETLKRAISVE-LEYCVDETSTPQSPGMLKSHY 230 +G+ESTI++ C + V + LRPG + ++RA + L T TP++ G L +HY Sbjct: 176 AVGIESTIID--CTRGVPVLLRPGAISRADVQRACGLRPLSKEELPTHTPRASGTLLAHY 233 Query: 231 APRSQVRL-------RAIHVNPREA--LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFN 281 AP ++VRL + V +A L + P+++ + II + AA Sbjct: 234 APTARVRLMDARQLQAGLDVLGADAAHLAVYARAPLRSASSRIILRRMPD--DAAAAAQQ 291 Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 LF ++ DD+GA I + P+ + +RL+RAAA Sbjct: 292 LFAALRGFDDAGARLIWIETPPDTPDWEGVRDRLQRAAA 330 >gi|167822943|ref|ZP_02454414.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 9] Length = 260 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 85/243 (34%), Positives = 124/243 (51%), Gaps = 16/243 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + A+ A LDAG +A PTETVYGL D++NP A+ R+Y K RPA +P+I H++ S Sbjct: 11 AEAIEDAAARLDAGELVAFPTETVYGLGADAQNPAAVARIYAAKGRPANHPVIVHLAPGS 70 Query: 69 MVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 P L FWPGPLTL+L T I + + R P + Sbjct: 71 DPGYWVEALPADAKKLIDAFWPGPLTLILK--RATHIPDAVSGGQDSVGLRCPSHPVAQA 128 Query: 127 LIETY-----GH-PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L+ + GH +A PSANR G +S T +H+ + ++DGG S +G+ESTI Sbjct: 129 LLRAFDARRGGHGGVAAPSANRFGHVSPTTAQHVRDE--FGDAVHVLDGGPSDVGIESTI 186 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISV--ELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238 +++ +LRPG + + + V L D T+ P++ G LK+HYAPR+ + L Sbjct: 187 LDL-SRGFPALLRPGHVSPRQIADVLGVAPRLPDGSDATA-PRASGTLKAHYAPRTPLAL 244 Query: 239 RAI 241 A Sbjct: 245 AAF 247 >gi|167901498|ref|ZP_02488703.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei NCTC 13177] Length = 255 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 85/243 (34%), Positives = 124/243 (51%), Gaps = 16/243 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + A+ A LDAG +A PTETVYGL D++NP A+ R+Y K RPA +P+I H++ S Sbjct: 10 AEAIEDAAARLDAGELVAFPTETVYGLGADAQNPAAVARIYAAKGRPANHPVIVHLAPGS 69 Query: 69 MVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 P L FWPGPLTL+L T I + + R P + Sbjct: 70 DPGYWVEALPADAKKLIDAFWPGPLTLILK--RATHIPDAVSGGQDSVGLRCPSHPVAQA 127 Query: 127 LIETY-----GH-PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L+ + GH +A PSANR G +S T +H+ + ++DGG S +G+ESTI Sbjct: 128 LLRAFDARRGGHGGVAAPSANRFGHVSPTTAQHVRDE--FGDAVHVLDGGPSDVGIESTI 185 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISV--ELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238 +++ +LRPG + + + V L D T+ P++ G LK+HYAPR+ + L Sbjct: 186 LDL-SRGFPALLRPGHVSPRQIADVLGVAPRLPDGSDATA-PRASGTLKAHYAPRTPLAL 243 Query: 239 RAI 241 A Sbjct: 244 AAF 246 >gi|113866600|ref|YP_725089.1| putative translation factor (SUA5) [Ralstonia eutropha H16] gi|113525376|emb|CAJ91721.1| putative translation factor (SUA5) [Ralstonia eutropha H16] Length = 325 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 90/325 (27%), Positives = 151/325 (46%), Gaps = 26/325 (8%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +A L+AG +A PTETVYGL D+ NP A+ R++ +K RP+ +P+I HV D + + Sbjct: 7 LDEAVRLLEAGQLVAFPTETVYGLGADAENPEAVARIFALKGRPSNHPVIVHVVDGADIG 66 Query: 72 KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 P + L FWPGPLTL+L IHP + R P + L+ Sbjct: 67 YWTDEVPEAAQQLIDAFWPGPLTLILK--RAAHIHPAVAGGQDSIGVRCPSHPVAQALLA 124 Query: 130 TYGH---PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV-QC 185 + +A PSAN+ GQ+S T +H+ + +++G ++G+ESTIV++ + Sbjct: 125 RFKRGRGGIAAPSANKFGQVSPTTAQHVRDE--FGDAVYVLEGDGVEVGIESTIVDLSRL 182 Query: 186 EKKVR--ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRS-------QV 236 ++ + +LRPG + + + + + G LK+HYAP + Q Sbjct: 183 DQGIGPVLLRPGAITAAMMAQVLGAAPLPPDAAAPR--ASGTLKAHYAPHTPLLLADAQA 240 Query: 237 RLRAIHVNPREALIRF-GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 + P +A + + G P+ + + +E L+ ++ D G + Sbjct: 241 ASAQLASLPDDARVAWVGRAPLVDQRCTWVQAPADAAAYARE----LYRLLRKLDKQGYT 296 Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320 + F +P + +RLERAAA Sbjct: 297 QLMFEVLPEGQDWAGVRDRLERAAA 321 >gi|167893038|ref|ZP_02480440.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 7894] Length = 257 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 85/243 (34%), Positives = 124/243 (51%), Gaps = 16/243 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + A+ A LDAG +A PTETVYGL D++NP A+ R+Y K RPA +P+I H++ S Sbjct: 10 AEAIEDAAARLDAGELVAFPTETVYGLGADAQNPAAVARIYAAKGRPANHPVIVHLAPGS 69 Query: 69 MVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 P L FWPGPLTL+L T I + + R P + Sbjct: 70 DPGYWVEALPADAKKLIDAFWPGPLTLILK--RATHIPDAVSGGQDSVGLRCPSHPVAQA 127 Query: 127 LIETY-----GH-PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L+ + GH +A PSANR G +S T +H+ + ++DGG S +G+ESTI Sbjct: 128 LLRAFDARRGGHGGVAAPSANRFGHVSPTTAQHVRDE--FGDAVHVLDGGPSDVGIESTI 185 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISV--ELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238 +++ +LRPG + + + V L D T+ P++ G LK+HYAPR+ + L Sbjct: 186 LDL-SRGFPALLRPGHVSPRQIADVLGVAPRLPDGSDATA-PRASGTLKAHYAPRTPLAL 243 Query: 239 RAI 241 A Sbjct: 244 AAF 246 >gi|46445827|ref|YP_007192.1| hypothetical protein pc0193 [Candidatus Protochlamydia amoebophila UWE25] gi|46399468|emb|CAF22917.1| conserved hypothetical protein [Candidatus Protochlamydia amoebophila UWE25] Length = 311 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 107/318 (33%), Positives = 159/318 (50%), Gaps = 23/318 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD-ISMV 70 + +A E L A +A+PTETVYGLA P AI++++EIK R +NPLI HV++ I + Sbjct: 5 VEEAIEKLLANQLVAMPTETVYGLAARLTCPGAIKKIFEIKGRSLVNPLIIHVANPIDVC 64 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLV----LDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 ++ P L FWPGPLTL+ LDL+ + + A L TA FR+P T Sbjct: 65 AYAIALPPHFDALTHAFWPGPLTLIVPIQLDLVDS-----IVRAGLPTAAFRMPSHPLTL 119 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +I G PL +PSAN SG+ S T+VKH+ + P ++DGG + G+ESTI++ + Sbjct: 120 HVIRAVG-PLVMPSANLSGKPSSTDVKHV-EMDFGLDFP-VLDGGPCQEGVESTILHYR- 175 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRL-RAIHV 243 + I R G L + + E Y + + SPG + HYAP++ + L + Sbjct: 176 NSQWEIARLGALSATVFQPILGYEPIYQKIVKNDQIISPGQMFRHYAPQATLFLGDQKQI 235 Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI- 302 + ++ F K+ L L E A NL+ ++ D A IA+ + Sbjct: 236 TEADFIVGFTE---KSYPVEKRVLYLGSLSNPHEVAENLYAVLRQLDFEKA-KIAWVDMD 291 Query: 303 -PNHGLGIAINNRLERAA 319 P+ GL I RL RA Sbjct: 292 FPSEGLWKTIAERLSRAG 309 >gi|167909744|ref|ZP_02496835.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 112] Length = 252 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 85/243 (34%), Positives = 124/243 (51%), Gaps = 16/243 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + A+ A LDAG +A PTETVYGL D++NP A+ R+Y K RPA +P+I H++ S Sbjct: 11 AEAIEDAAARLDAGELVAFPTETVYGLGADAQNPAAVARIYAAKGRPANHPVIVHLAPGS 70 Query: 69 MVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 P L FWPGPLTL+L T I + + R P + Sbjct: 71 DPGYWVEALPADAKKLIDAFWPGPLTLILK--RATHIPDAVSGGQDSVGLRCPSHPVAQA 128 Query: 127 LIETY-----GH-PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L+ + GH +A PSANR G +S T +H+ + ++DGG S +G+ESTI Sbjct: 129 LLRAFDARRGGHGGVAAPSANRFGHVSPTTAQHVRDE--FGDAVHVLDGGPSDVGIESTI 186 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISV--ELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238 +++ +LRPG + + + V L D T+ P++ G LK+HYAPR+ + L Sbjct: 187 LDL-SRGFPALLRPGHVSPRQIADVLGVAPRLPDGSDATA-PRASGTLKAHYAPRTPLAL 244 Query: 239 RAI 241 A Sbjct: 245 AAF 247 >gi|73540259|ref|YP_294779.1| translation factor SUA5 [Ralstonia eutropha JMP134] gi|72117672|gb|AAZ59935.1| translation factor SUA5 [Ralstonia eutropha JMP134] Length = 328 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 92/327 (28%), Positives = 158/327 (48%), Gaps = 30/327 (9%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +A L+AG +A PTETVYGL D+ +P A+ R++ +K RP+ +P+I HV D + + Sbjct: 10 LDEAVRLLEAGQLVAFPTETVYGLGADAESPEAVARIFALKGRPSNHPVIVHVVDGADIG 69 Query: 72 KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 P + L + FWPGPLTL+L + IH + R P + L+ Sbjct: 70 YWVDEVPEAATKLIEAFWPGPLTLILK--RASHIHAAVAGGQDSIGLRCPSHPVAQALLS 127 Query: 130 TYGH---PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV-QC 185 + +A PSAN+ GQ+S T +H+ + +++G ++G+ESTIV++ + Sbjct: 128 RFKRGRGGIAAPSANKFGQVSPTTAQHVRDE--FGDAVYVLEGDGVEVGIESTIVDLSRL 185 Query: 186 EKKVR--ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRS--------- 234 ++ + +LRPG + + + + E D + S G LK+HYAP + Sbjct: 186 DQGIGPVLLRPGAITPAMMAKVLG-EAPLPPDAAAPRAS-GTLKAHYAPHTPLVLADAAE 243 Query: 235 -QVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293 +L ++ + R A + G PI++ + T +E L+ ++ D G Sbjct: 244 LAAQLPSLAADARVAWV--GRAPIEDPRCTWVQAPADATAYARE----LYRLLRKLDKQG 297 Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAA 320 + + F +P + +RL+RAAA Sbjct: 298 FTQLVFEPLPEGHEWAGVRDRLQRAAA 324 >gi|187477397|ref|YP_785421.1| hypothetical protein BAV0893 [Bordetella avium 197N] gi|115421983|emb|CAJ48504.1| conserved hypothetical protein [Bordetella avium 197N] Length = 341 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 104/344 (30%), Positives = 167/344 (48%), Gaps = 47/344 (13%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 ++D+ A L+ GL +A PTETVYGL D+ N A+ +Y K RPA +P+I H++ Sbjct: 1 MSDAQIQAAARRLLEGGL-VAFPTETVYGLGADAENAQAVAGIYAAKGRPANHPVIVHIA 59 Query: 66 DISMVKKHAS-VDPLSLHLAKLFWPGPLTLVL-------DLLSTTD--------IHPLST 109 AS V P + L + FWPGPLTL+L + +S HP++ Sbjct: 60 PQGDPGYWASEVPPEASKLIEAFWPGPLTLILKRRPGMGEAVSGGQDSIGIRCPSHPVAQ 119 Query: 110 ANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSS---SICKEIPLI 166 A L + P G +A PSAN G +S T H+ S + +P + Sbjct: 120 ALLAAFAAQKPGGQGG---------VAAPSANTFGHVSPTLAAHVRSEFPREVAAGMP-V 169 Query: 167 IDGGISKIGLESTIVNV----QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQS 222 +DGG S++G+ESTI+++ Q V +LRPG + E + + + V + + + P++ Sbjct: 170 LDGGASEVGIESTILDLSRLDQGMGPV-LLRPGHISAEQIAQVLGVAVRRP--DAAAPRA 226 Query: 223 PGMLKSHYAPRSQVRL--RAIH----VNPREALIRFGNVPIKNIENAIISLNLSKTGKLK 276 G LK+HYAPR+ + L RA ++ R AL+ + + P + + I + + Sbjct: 227 SGTLKAHYAPRTPLELVDRASRPLGKIHGRIALVAY-SWPPQEGDGLIWHRVPADPARYA 285 Query: 277 EAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 +A L+ ++ D G I + P A+N+R+ RAAA Sbjct: 286 QA---LYATLRELDAQGYERIWVEAPPTDAAWDAVNDRIGRAAA 326 >gi|323304969|gb|EGA58723.1| Sua5p [Saccharomyces cerevisiae FostersB] Length = 337 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 89/265 (33%), Positives = 138/265 (52%), Gaps = 29/265 (10%) Query: 5 SITD---SNALRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 +ITD AL +A + D +A PTETVYGL + N ++ +Y+ K RP+ NPL Sbjct: 33 TITDPETETALVEAARIIRDTDETVAFPTETVYGLGGSALNDNSVLSIYKAKNRPSDNPL 92 Query: 61 ICHVSDISMVKK------HASVDPLSLHLAKLF-------WPGPLTLVLDLLST--TDIH 105 I HVS I + + H S L ++ ++ WPGPLT++L + S+ + + Sbjct: 93 ITHVSSIDQLNRKVFNQPHLSGTSLFDNIPSIYRPLISSLWPGPLTILLPVPSSEHSALS 152 Query: 106 PLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP 164 L+TA+ T R+P + LI P+A PSAN S + S T H+ + +IP Sbjct: 153 KLTTADQPTFAVRIPANPVARALIALSDTPIAAPSANASTRPSPTLASHVY-HDLKDKIP 211 Query: 165 LIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKR-------AISVELEYCVDET 217 +I+DGG K+G+EST+V+ C + +LRPGG E + + VE + V++ Sbjct: 212 IILDGGACKVGVESTVVDGLCNPPM-LLRPGGFTYEEIVKLGGEAWSLCKVENKKTVEKG 270 Query: 218 STPQSPGMLKSHYAPRSQVRLRAIH 242 ++PGM HY+P ++V L H Sbjct: 271 EKVRTPGMKYRHYSPSAKVVLLVPH 295 >gi|167917766|ref|ZP_02504857.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei BCC215] Length = 263 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 85/243 (34%), Positives = 124/243 (51%), Gaps = 16/243 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + A+ A LDAG +A PTETVYGL D++NP A+ R+Y K RPA +P+I H++ S Sbjct: 10 AEAIEDAAARLDAGELVAFPTETVYGLGADAQNPAAVARIYAAKGRPANHPVIVHLAPGS 69 Query: 69 MVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 P L FWPGPLTL+L T I + + R P + Sbjct: 70 DPGYWVEALPADAKKLIDAFWPGPLTLILK--RATHIPDAVSGGQDSVGLRCPSHPVAQA 127 Query: 127 LIETY-----GH-PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L+ + GH +A PSANR G +S T +H+ + ++DGG S +G+ESTI Sbjct: 128 LLRAFDARRGGHGGVAAPSANRFGHVSPTTAQHVRDE--FGDAVHVLDGGPSDVGIESTI 185 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISV--ELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238 +++ +LRPG + + + V L D T+ P++ G LK+HYAPR+ + L Sbjct: 186 LDL-SRGFPALLRPGHVSPRQIADVLGVAPRLPDGSDATA-PRASGTLKAHYAPRTPLAL 243 Query: 239 RAI 241 A Sbjct: 244 AAF 246 >gi|167814478|ref|ZP_02446158.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 91] Length = 245 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 85/242 (35%), Positives = 124/242 (51%), Gaps = 16/242 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + A+ A LDAG +A PTETVYGL D++NP A+ R+Y K RPA +P+I H++ S Sbjct: 10 AEAIEDAAARLDAGELVAFPTETVYGLGADAQNPAAVARIYAAKGRPANHPVIVHLAPGS 69 Query: 69 MVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 P L FWPGPLTL+L T I + + R P + Sbjct: 70 DPGYWVEALPADAKKLIDAFWPGPLTLILK--RATHIPDAVSGGQDSVGLRCPSHPVAQA 127 Query: 127 LIETY-----GH-PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L+ + GH +A PSANR G +S T +H+ + ++DGG S +G+ESTI Sbjct: 128 LLRAFDARRGGHGGVAAPSANRFGHVSPTTAQHVRDE--FGDAVHVLDGGPSDVGIESTI 185 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISV--ELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238 +++ +LRPG + + + V L D T+ P++ G LK+HYAPR+ + L Sbjct: 186 LDL-SRGFPALLRPGHVSPRQIADVLGVAPRLPDGSDATA-PRASGTLKAHYAPRTPLAL 243 Query: 239 RA 240 A Sbjct: 244 AA 245 >gi|223043990|ref|ZP_03614031.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus capitis SK14] gi|222442705|gb|EEE48809.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus capitis SK14] Length = 347 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 123/222 (55%), Gaps = 11/222 (4%) Query: 18 FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77 L+ GL +AIPTETVYGL ++RN A+R++YE K RP+ NPLI H+ +++ VD Sbjct: 28 LLNGGL-VAIPTETVYGLGANARNEHAVRKIYEAKGRPSDNPLIVHIHQREQLEEF--VD 84 Query: 78 PLSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGH 133 + ++KL FWPGP++ +L L T + T L + R+P + L++ Sbjct: 85 GIDERVSKLMDAFWPGPISFILP-LKTGYLCEKVTGGLNSIAVRMPSHKIGRALLQYIDE 143 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 P+A PSAN SG+ S T H+ + ++ I++G S+ GLEST+++ + RI R Sbjct: 144 PIAAPSANLSGRPSPTKFDHVF-QDLNGKVDGIVNGDQSEEGLESTVLDC-TQYPFRIAR 201 Query: 194 PGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRS 234 PG + +++ + ++ E P +PGM HY+P + Sbjct: 202 PGSITTSMIEQVLPGSIQKANYFEKDKPIAPGMKYKHYSPDT 243 >gi|314934185|ref|ZP_07841546.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus caprae C87] gi|313653090|gb|EFS16851.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus caprae C87] Length = 347 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 123/222 (55%), Gaps = 11/222 (4%) Query: 18 FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77 L+ GL +AIPTETVYGL ++RN A+R++YE K RP+ NPLI H+ +++ VD Sbjct: 28 LLNGGL-VAIPTETVYGLGANARNEHAVRKIYEAKGRPSDNPLIVHIHQREQLEEF--VD 84 Query: 78 PLSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGH 133 + ++KL FWPGP++ +L L T + T L + R+P + L++ Sbjct: 85 GIDERVSKLMDAFWPGPISFILP-LKTGYLCEKVTGGLNSIAVRMPSHKIGRALLQYIDE 143 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 P+A PSAN SG+ S T H+ + ++ I++G S+ GLEST+++ + RI R Sbjct: 144 PIAAPSANLSGRPSPTKFDHVF-QDLNGKVDGIVNGDQSEEGLESTVLDC-TQYPFRIAR 201 Query: 194 PGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRS 234 PG + +++ + ++ E P +PGM HY+P + Sbjct: 202 PGSITTSMIEQVLPGSIQKANYFEKDKPIAPGMKYKHYSPDT 243 >gi|121606749|ref|YP_984078.1| Sua5/YciO/YrdC/YwlC family protein [Polaromonas naphthalenivorans CJ2] gi|120595718|gb|ABM39157.1| translation factor SUA5 [Polaromonas naphthalenivorans CJ2] Length = 327 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 103/328 (31%), Positives = 158/328 (48%), Gaps = 21/328 (6%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 TD A+ +A + AG + PTETVYGL D+ + A+ +++ K RPA +PLI HV+D Sbjct: 6 TDPQAIVEAARRIQAGALVGFPTETVYGLGADASSDAAVAGIFKAKGRPADHPLIVHVAD 65 Query: 67 ISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 S V +AS P + L + FWPGPLT++L + + ++ R P Sbjct: 66 ASQVSDYASSVPAFAARLMQAFWPGPLTVILPRREGVALA--AAGGQESIGLRCPAHPVA 123 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 ++ G +A PSANR G++S T H+ + E+ L++DGG +G+ES+IV+ Sbjct: 124 LAFLKACGTGVAGPSANRFGRVSPTTALHV-AQEFGDEL-LVLDGGPCAVGIESSIVDCT 181 Query: 185 CEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241 + V +LRPG L L+ A + E S P++ G L++HYAP ++VRL + Sbjct: 182 RGRPV-LLRPGVLTRAQLEAACGEPVLGKEDAQAAGSAPRASGTLEAHYAPNAKVRL--M 238 Query: 242 HVNPREALIRFGNVPIKNIE-NAIISLNLSKTGKLKE--------AAFNLFNYMKIADDS 292 +A + +I A L + T L A LF ++ D Sbjct: 239 DAGAMQAALDLLGADAAHIAIYARTLLGIKSTRVLYRRMPDDALATAQQLFAVLRDFDAQ 298 Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAA 320 GA I + P + +RL RAAA Sbjct: 299 GARLIWVETPPVACEWDGVRDRLGRAAA 326 >gi|107023558|ref|YP_621885.1| Sua5/YciO/YrdC/YwlC [Burkholderia cenocepacia AU 1054] gi|116690642|ref|YP_836265.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia cenocepacia HI2424] gi|105893747|gb|ABF76912.1| translation factor SUA5 [Burkholderia cenocepacia AU 1054] gi|116648731|gb|ABK09372.1| translation factor SUA5 [Burkholderia cenocepacia HI2424] Length = 342 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 98/321 (30%), Positives = 153/321 (47%), Gaps = 36/321 (11%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-L 83 +A PTETVYGL D+ NP A+ R+Y K RPA +P+I H+ A P H L Sbjct: 27 VAFPTETVYGLGGDAANPEAVARIYAAKGRPANHPVIVHLPPGGDPGYWADDLPADAHAL 86 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY-----GH-PLA 136 + FWPGPLTL+L + I + + R P + L+ + GH +A Sbjct: 87 IEAFWPGPLTLILKRHAR--IPDAVSGGQDSVGLRCPSHPVAQALLAAFSARRGGHGGVA 144 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSANR G +S T +H+ + ++DGG S++G+ESTI+++ +LRPG Sbjct: 145 APSANRFGHVSPTTAQHVRDE--FGDTVHVLDGGASEVGIESTILDL-SRGFPALLRPGH 201 Query: 197 LEIETLKRAI--SVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGN 254 + + + + + +L D T+ P++ G LK+HYAPR+ + L P +AL Sbjct: 202 VTPQQIADVLGRAPKLPDGSDATA-PRASGTLKAHYAPRTPLALL-----PFDALEPLLA 255 Query: 255 VPIKNIENAIISLNLSKTGKLKEA---------------AFNLFNYMKIADDSGASSIAF 299 + E + S+ G +A A +L+ ++ D + + I Sbjct: 256 AAQTDGERVALVARASRAGHWAQADGVHFIAAPEDPQAYARDLYGMLRALDRAQVARILI 315 Query: 300 SSIPNHGLGIAINNRLERAAA 320 +P IA+N+RL RAAA Sbjct: 316 EKLPETVEWIAVNDRLGRAAA 336 >gi|293607071|ref|ZP_06689414.1| Sua5/YciO/YrdC/YwlC family protein [Achromobacter piechaudii ATCC 43553] gi|292814561|gb|EFF73699.1| Sua5/YciO/YrdC/YwlC family protein [Achromobacter piechaudii ATCC 43553] Length = 352 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 96/327 (29%), Positives = 157/327 (48%), Gaps = 31/327 (9%) Query: 18 FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-V 76 LD L A PTETVYGL D+++P A+ ++Y K RP+ +P+I H++ V A+ V Sbjct: 22 LLDGEL-AAFPTETVYGLGADAQSPEAVAKIYAAKGRPSNHPVIVHIAPTGDVSYWAADV 80 Query: 77 DPLSLHLAKLFWPGPLTLVLDLLS-TTDIHPLSTANLKTACFRVPCGFTKKLIETYGHP- 134 P + L FWPGPLTL+L D ++ C P G P Sbjct: 81 PPEARLLIDAFWPGPLTLILKRAPHIADTVSGGQDSIGIRCPSHPVAQALLAAFAAGKPN 140 Query: 135 ----LAIPSANRSGQISITNVKHILS---SSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +A PSAN+ GQ+S T +H+ S + +P +++GG S++G+ESTI+++ Sbjct: 141 GQGGVAAPSANKFGQVSPTRAEHVRSEFPDEVAAGMP-VLEGGASEVGIESTILDLSRLD 199 Query: 188 KVR---ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPR------SQVRL 238 + +LRPG + ++ + V++ + + P++ G LK+HYAPR S RL Sbjct: 200 RGAGPVLLRPGHISAAQIEAVLGVQV--FAPDAAAPRASGTLKAHYAPRTPLELASDERL 257 Query: 239 RAIHV-----NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293 R I + + ++ +G P +A + + A L+ ++ D G Sbjct: 258 RDIAQGRNLPSGKVVVVAYGEPP--EALDARVQWQPVPADPARYAQ-ALYGLLRDLDTQG 314 Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAA 320 + I + P A+N+R+ RAAA Sbjct: 315 YARIVVQAPPATDAWHAVNDRIGRAAA 341 >gi|206561172|ref|YP_002231937.1| hypothetical protein BCAL2835 [Burkholderia cenocepacia J2315] gi|198037214|emb|CAR53135.1| conserved hypothetical protein [Burkholderia cenocepacia J2315] Length = 342 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 98/321 (30%), Positives = 153/321 (47%), Gaps = 36/321 (11%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-L 83 +A PTETVYGL D+ NP A+ R+Y K RPA +P+I H+ A P H L Sbjct: 27 VAFPTETVYGLGGDAANPEAVARIYAAKGRPANHPVIVHLPPGGDPGYWADDLPADAHAL 86 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY-----GH-PLA 136 FWPGPLTL+L + I + + R P + L+ + GH +A Sbjct: 87 IDAFWPGPLTLILKRHAR--IPDAVSGGQDSVGLRCPSHPVAQALLAAFSARRGGHGGVA 144 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSANR G +S T +H+ + ++DGG S++G+ESTI+++ +LRPG Sbjct: 145 APSANRFGHVSPTTAQHVRDE--FGDTVHVLDGGASEVGIESTILDL-SRGFPALLRPGH 201 Query: 197 LEIETLKRAI--SVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGN 254 + + + + + +L D T+ P++ G LK+HYAPR+ + L P +AL Sbjct: 202 VTPQQIADVLGRAPKLPDGSDATA-PRASGTLKAHYAPRTPLALL-----PFDALEPLLA 255 Query: 255 VPIKNIENAIISLNLSKTGKLKEA---------------AFNLFNYMKIADDSGASSIAF 299 + E + S+ G+ +A A +L+ ++ D + + I Sbjct: 256 AAQTDGERIALVARASRAGRWAQADGVHFVAAPEDPQAYARDLYGMLRALDRAQVARILV 315 Query: 300 SSIPNHGLGIAINNRLERAAA 320 +P IA+N+RL RAAA Sbjct: 316 EKLPETVEWIAVNDRLGRAAA 336 >gi|156845519|ref|XP_001645650.1| hypothetical protein Kpol_541p35 [Vanderwaltozyma polyspora DSM 70294] gi|156116316|gb|EDO17792.1| hypothetical protein Kpol_541p35 [Vanderwaltozyma polyspora DSM 70294] Length = 422 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 83/257 (32%), Positives = 128/257 (49%), Gaps = 27/257 (10%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 T++ L A D +A PTETVYGL S N ++ +Y+ K RP+ NPLI HVS Sbjct: 45 TEAALLEAASIIRDTDNVVAFPTETVYGLGGSSLNDKSVLNIYKAKNRPSDNPLISHVSS 104 Query: 67 ISMVKKH---------------ASVDPLSLHLAKLFWPGPLTLVLDL--LSTTDIHPLST 109 I + + +++ P+ +L WPGPLT++L + ++ L+T Sbjct: 105 IDQLNRKIYNNVSETNNPKSLLSNIPPIYHNLISKLWPGPLTILLPVPKEGNGNLSKLTT 164 Query: 110 ANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 N T R+P + LI P+A PSAN S + S T H+ + +IPLI+D Sbjct: 165 VNQPTFAVRIPSHPVARALIALSDTPIAAPSANASTRPSPTLASHVF-HDLNTKIPLILD 223 Query: 169 GGISKIGLESTIVNVQCEKKVRILRPGGLEIETL-------KRAISVELEYCVDETSTPQ 221 GG +G+EST+++ C +LRPGG E + ++ VE + V + + Sbjct: 224 GGACSVGVESTVIDGLCNPPA-LLRPGGFTYEQIVHLGGESWKSCKVENKKTVLKGEKVR 282 Query: 222 SPGMLKSHYAPRSQVRL 238 +PGM HY+P ++V L Sbjct: 283 TPGMKYRHYSPSAKVVL 299 >gi|149234890|ref|XP_001523324.1| protein SUA5 [Lodderomyces elongisporus NRRL YB-4239] gi|146453113|gb|EDK47369.1| protein SUA5 [Lodderomyces elongisporus NRRL YB-4239] Length = 454 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 111/401 (27%), Positives = 173/401 (43%), Gaps = 90/401 (22%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 T++N A E L I PTETVYGLA + + +++ +Y K+RPA NPLI HVS Sbjct: 50 TEANIKLAAKELLTTNNAIGFPTETVYGLAGSALSDESVKSIYRAKQRPADNPLIIHVSS 109 Query: 67 ISMVKK-----HASVDPLSLHLAKLFWPGPLTLVL------------------------- 96 +S +++ + + + +L + FWPGPLT++L Sbjct: 110 LSQLQRKLLPANYEIPKIYHNLIEHFWPGPLTILLPNNSSNSNSNSSSNSNSNSNSNSSS 169 Query: 97 ----DLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNV 151 + + I TAN T R+P + LI PLA PSAN S + S T Sbjct: 170 NSSSSSNNKSPISSYVTANQDTFAVRMPAHPVARALIAISDLPLAAPSANSSTKPSPTLA 229 Query: 152 KHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELE 211 +H++ + +IP+++DGG +G+EST+V+ + + +LRPGG+ +E LKR E + Sbjct: 230 QHVM-HDLGGKIPIVLDGGACDVGVESTVVDGLSDPPM-LLRPGGVSLEELKRVGGEEWK 287 Query: 212 YCVDETSTP------QSPGMLKSHYAPRSQVRLRAIHVNPREALIRF---GNVPIKNIE- 261 T ++PGM HY+P ++V L + +A+ ++ V + +E Sbjct: 288 NVRVAKRTAGADELVKTPGMKYKHYSPDAKVVLFVNCGDGEDAIAKYLKANRVSVDGVEV 347 Query: 262 -------------------NAIISLNLS--KTGKLKEAAF-------------------- 280 +IS N K LK F Sbjct: 348 GARGDLRDSKDSKQEGQGQKHLISANADTPKVALLKSRHFRDYKGIDVVRDLGSAGDDIA 407 Query: 281 -NLFNYMKIAD-DSGASSIAFSSIPNHGLGIAINNRLERAA 319 NLF Y++ D D I + G+AI NRL++AA Sbjct: 408 RNLFKYLREVDEDEKVDLILIEGVEEVDEGLAIMNRLKKAA 448 >gi|254247338|ref|ZP_04940659.1| Sua5/YciO/YrdC/YwlC [Burkholderia cenocepacia PC184] gi|124872114|gb|EAY63830.1| Sua5/YciO/YrdC/YwlC [Burkholderia cenocepacia PC184] Length = 342 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 98/321 (30%), Positives = 152/321 (47%), Gaps = 36/321 (11%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-L 83 +A PTETVYGL D+ NP A+ R+Y K RPA +P+I H+ A P H L Sbjct: 27 VAFPTETVYGLGGDAANPEAVARIYAAKGRPANHPVIVHLPPGGDPGYWADDLPADAHAL 86 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY-----GH-PLA 136 FWPGPLTL+L + I + + R P + L+ + GH +A Sbjct: 87 IDAFWPGPLTLILKRHAR--IPDAVSGGQDSVGLRCPSHPVAQALLAAFSARRGGHGGVA 144 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSANR G +S T +H+ + ++DGG S++G+ESTI+++ +LRPG Sbjct: 145 APSANRFGHVSPTTAQHVRDE--FGDTVHVLDGGASEVGIESTILDL-SRGFPALLRPGH 201 Query: 197 LEIETLKRAI--SVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGN 254 + + + + + +L D T+ P++ G LK+HYAPR+ + L P +AL Sbjct: 202 VTPQQIADVLGRAPKLPDGSDATA-PRASGTLKAHYAPRTPLALL-----PFDALEPLLA 255 Query: 255 VPIKNIENAIISLNLSKTGKLKEA---------------AFNLFNYMKIADDSGASSIAF 299 + E + S+ G +A A +L+ ++ D + + I Sbjct: 256 AAQTDGERVALVARASRAGHWAQADGVHFIAAPEDPQAYARDLYGMLRALDRAQVARILV 315 Query: 300 SSIPNHGLGIAINNRLERAAA 320 +P IA+N+RL RAAA Sbjct: 316 EKLPETVEWIAVNDRLGRAAA 336 >gi|309780644|ref|ZP_07675386.1| Sua5/YciO/YrdC/YwlC family protein [Ralstonia sp. 5_7_47FAA] gi|308920567|gb|EFP66222.1| Sua5/YciO/YrdC/YwlC family protein [Ralstonia sp. 5_7_47FAA] Length = 337 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 95/324 (29%), Positives = 159/324 (49%), Gaps = 24/324 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +A L+AG +A PTETVYGL D+ NP AI ++Y K RP+ +P+I HV D + + Sbjct: 17 LDEAARRLEAGELVAFPTETVYGLGADAENPQAIAKIYAAKGRPSNHPVIVHVVDGADIS 76 Query: 72 KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 P ++L L + FWPGPLTL+L I + R P + L+ Sbjct: 77 YWTDEVPGIALQLIEAFWPGPLTLILK--RAPHIPAAVAGGQDSIGLRCPSHPVAQALLS 134 Query: 130 TYGHP---LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV-QC 185 + +A PSAN+ GQ+S T +H+ + +++G +G+ESTI+++ + Sbjct: 135 RFKRGRGGIAAPSANKFGQVSPTTAQHVRDE--FGDAVFVLEGDGVDVGIESTIIDLSRL 192 Query: 186 EKKVR--ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA--- 240 ++ + +LRPG + + ++R ++ EL D + S G LK+HYAPR+ + L + Sbjct: 193 DQGIGPVLLRPGAITPDDIER-VTGELPAAPDAAAPRAS-GTLKAHYAPRTPLYLLSAAD 250 Query: 241 ----IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296 + P + I + P+ + + + G A + L + D G + Sbjct: 251 VPARLAALPADKRIVWLGTPVALRDGCDQRVAPATPGAYANALYALLREL---DRGGYDA 307 Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320 I ++ + A+N+RL RAAA Sbjct: 308 IWVETLADTPAWAAVNDRLRRAAA 331 >gi|317405862|gb|EFV86145.1| translation factor [Achromobacter xylosoxidans C54] Length = 348 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 96/324 (29%), Positives = 155/324 (47%), Gaps = 30/324 (9%) Query: 21 AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS---DISMVKKHASVD 77 AG +A PTETVYGL D+ NP A+ +Y K RP+ +P+I H++ D+S A V Sbjct: 22 AGELVAFPTETVYGLGADAENPRAVGSIYAAKGRPSNHPVIVHIAPQGDLSYWA--AEVP 79 Query: 78 PLSLHLAKLFWPGPLTLVLDLLS-TTDIHPLSTANLKTACFRVPCGFTKKLIETYGHP-- 134 P + L FWPGPLTL+L D ++ C P G P Sbjct: 80 PEARLLIDAFWPGPLTLILKRAPHIADTVSGGQDSIGIRCPSHPVAQALLAAFAAGKPNG 139 Query: 135 ---LAIPSANRSGQISITNVKHI---LSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 +A PSAN+ GQ+S T H+ + +P +++GG S++G+ESTI+++ + Sbjct: 140 QGGVAAPSANKFGQVSPTRADHVRGEFPDEVAAGMP-VLEGGASEVGIESTILDLSRLDR 198 Query: 189 VR---ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245 +LRPG + ++ + V++ + + P++ G LK+HYAPR+ + L A Sbjct: 199 GAGPVLLRPGHISAAQIEAVLGVQV--FAPDAAAPRASGTLKAHYAPRTALEL-ASDARL 255 Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLK---------EAAFNLFNYMKIADDSGASS 296 + AL G P K + A + +++ A L+ ++ D G + Sbjct: 256 QAALQGRGLPPGKVVVVAYAPPPAACDTRIQWQQVPADPARYAQALYALLRDLDGQGFAR 315 Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320 I + P+ A+N+R+ RAAA Sbjct: 316 IIVQAPPDSEAWHAVNDRIGRAAA 339 >gi|260221970|emb|CBA31066.1| hypothetical protein Csp_C26690 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 352 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 96/335 (28%), Positives = 159/335 (47%), Gaps = 52/335 (15%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI-----SMVKKHASVDPL 79 + +PTETVYGL D+ +P A+ +++ K RP+ +PLI HV+ + A V Sbjct: 31 LGLPTETVYGLGADASDPVAVGKIFNAKGRPSDHPLIVHVAAFDGGMGGVAHYCARVPAF 90 Query: 80 SLHLAKLFWPGPLTLVLDLLSTTD---------------IHPLSTANLKTACFRVPCGFT 124 + L FWPGPLTL+L HP++ A L T R P Sbjct: 91 AQQLMSAFWPGPLTLILPRKEGVGEAAAGGQNSIGLRCPAHPVAQAVLAT--LRKPSDGG 148 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + E +G +A PSAN+ G++S T H+ S ++ LI+DGG ++G+ESTI++ Sbjct: 149 R---EVWG--IAAPSANKFGRVSPTTAAHV-HSEFGDDL-LILDGGPCEVGIESTIID-- 199 Query: 185 CEKKVRI-LRPGGLEIETLKRAISVEL----EYCVDETSTPQSPGMLKSHYAPRSQVRL- 238 C + + LRPG + + ++ A +L E P++ G L SHYAP + VRL Sbjct: 200 CTRGAPVLLRPGSITAQQVEDACGRKLLSKEELLAQSQQAPRASGTLDSHYAPSATVRLM 259 Query: 239 --RAIHV-----------NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNY 285 +A+ + R + + P+ ++ + +++ + + + AA LF+ Sbjct: 260 DAKALQSALDLLSGTTPPDKRPTIALYHRSPL-HVRSPLVTAHRMPS-HAQPAAHELFSK 317 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ D G I + P+ + +RL RAAA Sbjct: 318 LREMDAQGVKLIWVEAPPDSPEWDGVRDRLTRAAA 352 >gi|314935935|ref|ZP_07843285.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus hominis subsp. hominis C80] gi|313655941|gb|EFS19683.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus hominis subsp. hominis C80] Length = 346 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 99/329 (30%), Positives = 157/329 (47%), Gaps = 21/329 (6%) Query: 8 DSNALRKACE----FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 DS + E + + GL IAIPTETVYGL +++N A+ +Y+ K RP+ NPLI H Sbjct: 14 DSQTFSQLAEIKTIYENGGL-IAIPTETVYGLGANAKNEQAVENIYKAKGRPSDNPLIVH 72 Query: 64 VSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 + S + S P L FWPGP++ +L L + T L + R+P Sbjct: 73 IYKQSQMDAFVSTIPKEAQKLMNAFWPGPISFILPLKQGYLCEKV-TGGLNSIAVRMPSH 131 Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 + ++E P+A PSAN SG+ S T +H+ + + +I I++G S+ GLEST++ Sbjct: 132 PIGRAILEYVDLPIAAPSANISGRPSPTTFQHVY-NDLNGKIDGIVNGDQSEEGLESTVL 190 Query: 182 NVQCEKKVRILRPGGLEIETLKRAI--SVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 + + RI RPG + L + SV ++Y ++ P +PGM HYAP++ V + Sbjct: 191 DC-TQFPFRIARPGSITQTMLNHVVPHSV-IQYDYNQLERPIAPGMKYKHYAPKTPVYML 248 Query: 240 AIHVNPREALIRFGNVPI------KNIENAIISLNLSKTGK-LKEAAFNLFNYMKIADDS 292 P L G + K + ++L + + +K A NL+ + DD Sbjct: 249 TEFTQPISELNESGLAFVLPSSMKKYVPKDCTFISLCENQRDVKGANHNLYKILHDIDDD 308 Query: 293 GASSIAF-SSIPNHGLGIAINNRLERAAA 320 AF + N A+ NR+ +A Sbjct: 309 ERIQKAFIYTFDNIEGSEAVMNRMMKATG 337 >gi|170733986|ref|YP_001765933.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia cenocepacia MC0-3] gi|169817228|gb|ACA91811.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia cenocepacia MC0-3] Length = 342 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 98/321 (30%), Positives = 153/321 (47%), Gaps = 36/321 (11%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-L 83 +A PTETVYGL D+ NP A+ R+Y K RPA +P+I H+ A P H L Sbjct: 27 VAFPTETVYGLGGDAANPEAVARIYAAKGRPANHPVIVHLPPGGDPGYWADDLPADAHAL 86 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY-----GH-PLA 136 + FWPGPLTL+L + I + + R P + L+ + GH +A Sbjct: 87 IEAFWPGPLTLILKRHAR--IPDAVSGGQDSVGLRCPSHPVAQALLAAFSARRGGHGGVA 144 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSANR G +S T +H+ + ++DGG S++G+ESTI+++ +LRPG Sbjct: 145 APSANRFGHVSPTTAQHVRDE--FGDTVHVLDGGPSEVGIESTILDL-SRGFPALLRPGH 201 Query: 197 LEIETLKRAI--SVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGN 254 + + + + + +L D T+ P++ G LK+HYAPR+ + L P +AL Sbjct: 202 VTPQQIADVLGRAPKLPDGSDATA-PRASGTLKAHYAPRTPLALL-----PFDALEPLLA 255 Query: 255 VPIKNIENAIISLNLSKTGKLKEA---------------AFNLFNYMKIADDSGASSIAF 299 + E + S+ G +A A +L+ ++ D + + I Sbjct: 256 AAQTDGERVALVARASRAGHWAQADGVHFIAAPEDPQAYARDLYGMLRALDRAQVARILV 315 Query: 300 SSIPNHGLGIAINNRLERAAA 320 +P IA+N+RL RAAA Sbjct: 316 EKLPETVEWIAVNDRLGRAAA 336 >gi|330826999|ref|YP_004390302.1| Sua5/YciO/YrdC/YwlC family protein [Alicycliphilus denitrificans K601] gi|329312371|gb|AEB86786.1| Sua5/YciO/YrdC/YwlC family protein [Alicycliphilus denitrificans K601] Length = 332 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 108/339 (31%), Positives = 170/339 (50%), Gaps = 31/339 (9%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 I+ T ++++ A L G + +PTETVYGLA D+ N A+ R++ K RPA +PLI Sbjct: 2 ILDGTLPSSVQAAARLLARGELLGLPTETVYGLAADADNDAAVARIFAAKGRPANHPLIV 61 Query: 63 HVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 HV+D + + +A PL + L FWPGPLTL+L L ST + R P Sbjct: 62 HVADSTAITHYAKEVPLFAQQLIDAFWPGPLTLILPRLPAAAR--ASTGGQDSVGLRCPA 119 Query: 122 GFTKKLI---------ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172 + +G +A PSAN G++S T +H+ + + E+ L++DGG Sbjct: 120 HPVAHAVLAACQRLDPPVWG--VAAPSANHFGKVSPTTAQHV-ADAFGDEL-LVLDGGAC 175 Query: 173 KIGLESTIVNVQCEKKVRI-LRPGGLEIETLKRAISVE-LEYCVDETSTPQSPGMLKSHY 230 +G+ESTI++ C + V + LRPG + ++RA + L TP++ G L +HY Sbjct: 176 AVGIESTIID--CTRGVPVLLRPGAISRADVQRACGLRPLSKEELPAHTPRASGTLLAHY 233 Query: 231 APRSQVRL-------RAIHVNPREA--LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFN 281 AP ++VRL + V +A L + P+++ + II + AA Sbjct: 234 APTARVRLMDARQLQAGLDVLGADAAHLAVYARAPLRSASSRIILRRMPD--DAAAAAQQ 291 Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 LF ++ DD+GA I + P+ + +RL+RAAA Sbjct: 292 LFAALRGFDDAGARLIWIETPPDTPDWEGVRDRLQRAAA 330 >gi|319778521|ref|YP_004129434.1| Sua5 subfamily-like protein [Taylorella equigenitalis MCE9] gi|317108545|gb|ADU91291.1| Sua5 subfamily-like protein [Taylorella equigenitalis MCE9] Length = 330 Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 104/336 (30%), Positives = 157/336 (46%), Gaps = 28/336 (8%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 M +D+ + A LD GL +A+PTETVYGL D+ N A+ R+Y +K RP +PLI H Sbjct: 1 MQFSDTTIKQAALYLLDGGL-VALPTETVYGLGADALNKDAVERIYSVKGRPTNHPLIVH 59 Query: 64 V-SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-- 120 V D + + + + L K FWPGPLTLVL + ++ T T R P Sbjct: 60 VHKDADLNFWCSEIPDDAKKLIKAFWPGPLTLVLP--KSQNVPDYITGGQSTVAIRSPNH 117 Query: 121 -------CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173 F+ KL G + PSAN G +S T +H+ I IDGG S+ Sbjct: 118 PIAQAVLLEFS-KLKNNAG--IVAPSANLFGHVSPTKNEHVKDEFPSDNI-YFIDGGSSE 173 Query: 174 IGLESTIVNVQCEK-KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAP 232 +G+ESTI+++ K ILRPG + + + + + VE + + S P G LKSHYAP Sbjct: 174 VGIESTILDLSRPKIGPVILRPGHITKKDIYKVLGVEPK--DKDISAPVVSGSLKSHYAP 231 Query: 233 RSQV-------RLRAI-HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFN 284 + + L I H+ ++ I + + +I N I + E A ++ Sbjct: 232 KIPIYPLDDISNLDFINHLKHKKVAIIYHSNNHYDILNEIDVIYYKLPSLSTEYASKIYE 291 Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ + I S+P A+ +R+ RA A Sbjct: 292 TLRKIESQNMDLILLESLPLDAEWDAVRDRMNRALA 327 >gi|319796432|ref|YP_004158072.1| sua5/ycio/yrdc/ywlc family protein [Variovorax paradoxus EPS] gi|315598895|gb|ADU39961.1| Sua5/YciO/YrdC/YwlC family protein [Variovorax paradoxus EPS] Length = 333 Score = 119 bits (297), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 83/246 (33%), Positives = 130/246 (52%), Gaps = 14/246 (5%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 I+ A+ +A L AG +A PTETVYGL D+ + A+ +++ K RPA +PLI Sbjct: 2 ILDGQSPEAIAEAVRMLRAGGLVAFPTETVYGLGADASSDMAVAGIFKAKGRPADHPLIV 61 Query: 63 HVS----DISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDL---LSTTDIHPLSTANLKT 114 HV+ + + A PL + L + FWPGPLTL++ + T T L+ Sbjct: 62 HVAAGMKGTEALSRFAQPLPLFAQKLVQAFWPGPLTLIVTRQPGVGTAAAGGQDTIGLRC 121 Query: 115 ACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174 V + E +A PSANR G++S T +H+ + +P ++DGG ++ Sbjct: 122 PSHPVAQALLEACAEQGVPGVAGPSANRFGRVSPTTAQHVY-EEFGEAVP-VVDGGACEV 179 Query: 175 GLESTIVNVQCEKKVRI-LRPGGLEIETLKRAISVEL-EYCVDETSTPQSPGMLKSHYAP 232 G+ESTIV+ C + + LRPG + ++ A +L + V ET P++ G L++HYAP Sbjct: 180 GIESTIVD--CSRGAPVLLRPGLITRAQIEAACGEKLSDRDVLETPDPRASGTLEAHYAP 237 Query: 233 RSQVRL 238 ++VRL Sbjct: 238 NAKVRL 243 >gi|16081439|ref|NP_393782.1| sua5 related protein [Thermoplasma acidophilum DSM 1728] gi|10639445|emb|CAC11447.1| sua5 related protein [Thermoplasma acidophilum] Length = 352 Score = 119 bits (297), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 96/325 (29%), Positives = 155/325 (47%), Gaps = 24/325 (7%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + + A + L +G + PTETVYGL + NP A ++++ K RP+ NPLI H+S SM Sbjct: 15 DQIVDAVDALRSGGTVVFPTETVYGLGALASNPEACKKIFIAKGRPSDNPLIVHIS--SM 72 Query: 70 VKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + + DP + + WPGPLT+V + I + TA L T R+P Sbjct: 73 EQFFSYSDPDDSYPIEGLNKAWPGPLTVV--VRKAQGISDVVTAGLPTVAIRMPDDPIAH 130 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LIE G P+A PSAN S + SIT+ + + + + +IID G ++ G+ESTI+++ Sbjct: 131 DLIEMAG-PIAAPSANISTRPSITDSRDAI-RFLDGRVDVIIDAGPTRFGIESTIIDI-T 187 Query: 186 EKKVRILRPGGLEIETLKRA----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL--- 238 ++ +LRPG IE L+ + ++ + E +PGM HY+P +++ L Sbjct: 188 KRPAELLRPGSYAIEDLEPVFGPIVYGDVARGLGEAKIAITPGMKYRHYSPSTKLILAET 247 Query: 239 ----RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGA 294 R I E ++ + + I + + L A NLF+ DD Sbjct: 248 REVFRQILDTVDEDMVVLATEEMVDGHKKAIIIGTDR--DLYSVAHNLFSSFIALDDMHV 305 Query: 295 SSIAFSSIPNHGLGIAINNRLERAA 319 G+G A+ NR+ +A+ Sbjct: 306 DLALIHPFEERGIGFALMNRIRKAS 330 >gi|329908773|ref|ZP_08274951.1| Sua5 YciO YrdC YwlC family protein [Oxalobacteraceae bacterium IMCC9480] gi|327546606|gb|EGF31576.1| Sua5 YciO YrdC YwlC family protein [Oxalobacteraceae bacterium IMCC9480] Length = 333 Score = 119 bits (297), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 101/335 (30%), Positives = 161/335 (48%), Gaps = 32/335 (9%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 MS+ + + +A L+ G +A PTETVYGL D+ NP AI R+Y K RP+ +P+I H Sbjct: 1 MSLPHDDDILRAAGLLEQGRLVAFPTETVYGLGADAENPAAIARIYAAKGRPSNHPVIVH 60 Query: 64 VSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC-FRVPC 121 ++ + S P L FWPGPLTL+L + P + A + + R P Sbjct: 61 LAPEADPGYWVSAIPNEAQALIDAFWPGPLTLILPRAAHI---PAAVAGGQNSIGVRCPS 117 Query: 122 G-FTKKLIETYGHP---LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 + L+ + +A PSAN+ G +S T +H+ + LI+DGG S++G+E Sbjct: 118 HPVAQALLRAFKGGKGGIAAPSANKFGHVSPTIAQHVRDEFTDGSVDLILDGGQSEVGIE 177 Query: 178 STIVNVQ--CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQ 235 S+I+++ +LRPG I L+ A + + + + P++ G L++HYAPR+ Sbjct: 178 SSIIDLSRLDSHGPVLLRPG--RITALQLAQVLGVAPAAPDAAAPRASGTLEAHYAPRTP 235 Query: 236 VRLRAIHVNP-----------REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFN 284 V + A P R AL+ + + + + L S G A L+ Sbjct: 236 VAMIASADLPQILQQLAAAGRRVALLHWSD----SQHAGALQLPSSPAGY----AHGLYA 287 Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 +++ D + A I + P AIN+RL RAA Sbjct: 288 GLRLLDMADADLILIEAPPGSADWQAINDRLRRAA 322 >gi|11498387|ref|NP_069615.1| hypothetical protein AF0781 [Archaeoglobus fulgidus DSM 4304] gi|2649831|gb|AAB90461.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304] Length = 309 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 97/315 (30%), Positives = 151/315 (47%), Gaps = 21/315 (6%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +RKA L AG +A PTETVYG+ D+ N A+RRLYEIK R P I V Sbjct: 10 EGIRKAVAVLRAGGIVAFPTETVYGMGCDATNEEALRRLYEIKGRSLNKPFIVGVWSRDY 69 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLST--TDIHPLSTANLKTACFRVPCGFTKKL 127 V K A VD + L + F+PGPLTLVL + + P ++ VP +L Sbjct: 70 VGKIAEVDERAEKLMEAFFPGPLTLVLKSKGVMPSLLSPKGKIAVRMPAHEVPL----QL 125 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E P+ +PSAN SG+ S+ +H++ + I ++ G K+G+ESTIV++ E Sbjct: 126 MEMLRKPIVVPSANLSGRPSLMRWEHVV-EELGSRIDAVVKGE-CKVGVESTIVDL-TET 182 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 ++LR G + +E++K+ + V +E T + R+ R++ V+ E Sbjct: 183 PAKVLRVGAVSVESIKKHVEVVVE---PRKETYSLSCQVYVFVGERALQRIKEF-VDEAE 238 Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307 R + + I + I + S +E + NLF+ ++ A+ I + N Sbjct: 239 KRGRVVVIAREKITDETIVIGKSA----EEYSANLFSAVREAESRRPDIIVIEGVENE-- 292 Query: 308 GIAINNRLERAAAPR 322 AI +RL R A R Sbjct: 293 --AIMDRLRRLAGER 305 >gi|321248724|ref|XP_003191218.1| protein required for respiratory growth [Cryptococcus gattii WM276] gi|317457685|gb|ADV19431.1| Protein required for respiratory growth, putative [Cryptococcus gattii WM276] Length = 488 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 98/283 (34%), Positives = 143/283 (50%), Gaps = 53/283 (18%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +A + L + +A+PTETVYGLA S +P A + +Y+IK RP+ NPLI HVS ++M++ Sbjct: 64 LEEASKHLHSHKTVAVPTETVYGLAASSLDPEACKMIYKIKNRPSDNPLIIHVSSLNMLR 123 Query: 72 K----HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + + PL L L FWPGPL+L+ S +T R+P T Sbjct: 124 RLLPPAYNFSPLYLALINAFWPGPLSLLFPSPSPP-----PPPAPQTNAIRMPSHPLTLA 178 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSS-SICKEIPLIIDGGISKIGLESTIVNVQC 185 LI PL+ PSAN SG+ S T +H+L+ + + IIDGG ++G+EST+VN Sbjct: 179 LIAHSNLPLSAPSANSSGRPSPTKAQHVLNDLNGADGLGCIIDGGDCEVGVESTVVNGLE 238 Query: 186 EK-----KVRILRPGGLEIETLKRAIS--------VEL---------------------- 210 K KV ILRPGGL +E +K+ + E+ Sbjct: 239 WKEGGGGKVDILRPGGLGVEQIKKIVDEVDGGEGKTEIFLLGKPWKRASFKHSSSTDSVK 298 Query: 211 EYCVDETSTPQ------SPGMLKSHYAPRSQVR-LRAIHVNPR 246 + V+ ++TP+ +PGM HY+PR V L+ +V PR Sbjct: 299 QNDVNFSTTPKVNLPPSTPGMKYRHYSPRVPVFLLKPSNVFPR 341 >gi|332285295|ref|YP_004417206.1| hypothetical protein PT7_2042 [Pusillimonas sp. T7-7] gi|330429248|gb|AEC20582.1| hypothetical protein PT7_2042 [Pusillimonas sp. T7-7] Length = 346 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 100/343 (29%), Positives = 160/343 (46%), Gaps = 48/343 (13%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS-DISMV 70 L A L G +A PTETVYGL D+ NP A+ +Y K RPA +P+I HV+ + + Sbjct: 15 LSAAARRLAQGGLVAFPTETVYGLGADAENPQALASIYAAKGRPANHPVIVHVAPEADLG 74 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLD--------LLSTTD-------IHPLSTANLKTA 115 ASV + L + FWPGPLTL+L + D HP++ A L+ Sbjct: 75 YWAASVPAEARALIQAFWPGPLTLILPRAPHIPAAVSGGQDSIGLRCPSHPVAQALLREF 134 Query: 116 CFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSS--SICKEIPLIIDGGISK 173 + P G +A PSAN+ GQ+S T+ H+ + + + L+++GG S+ Sbjct: 135 ARQKPNGQGG---------VAAPSANKFGQVSPTHAAHVRTEFPELGTDQLLVLEGGPSE 185 Query: 174 IGLESTIVNVQ---CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHY 230 +G+ESTIV+V +LRPG + L + + PQ G LK+HY Sbjct: 186 VGIESTIVDVSRLGLGVGPVLLRPGHISAAQLAEVLGA--PPARPDQDAPQVSGSLKAHY 243 Query: 231 APRSQVRLRAI-------------HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKE 277 AP + +++ + +++ R A++ F N + N + + +L + + Sbjct: 244 APHTPLQVLPLDQLLDAARQSLPNNLSGRTAVVVF-NPELLNTMSDVDTLKCNADPAVY- 301 Query: 278 AAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 A L+ ++ D+ G I P A+N+R+ RAAA Sbjct: 302 -ARELYALLRRLDEQGYDRILMEQPPRTATWQAVNDRIGRAAA 343 >gi|187925244|ref|YP_001896886.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia phytofirmans PsJN] gi|187716438|gb|ACD17662.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia phytofirmans PsJN] Length = 346 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 100/342 (29%), Positives = 161/342 (47%), Gaps = 47/342 (13%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + A LDAG +A PTETVYGL D+ +P A+ R+Y K RPA +P+I H++ Sbjct: 16 AEQIEHAAALLDAGELVAFPTETVYGLGGDAESPDAVARIYAAKGRPANHPVIVHLA--P 73 Query: 69 MVKKHASVDPLSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 + V+ L +L FWPGPLTL+L I + + R P Sbjct: 74 QGDPNYWVERLPAEAQRLIDAFWPGPLTLILK--RAARIPAAVSGGQDSVGLRCPSHPVA 131 Query: 125 KKLIETY-----GH-PLAIPSANRSGQISITNVKHI---LSSSICKEIPLIIDGGISKIG 175 + L++ + GH +A PSANR G +S T +H+ +I ++DGG S +G Sbjct: 132 QALLDAFNALRGGHGGVAAPSANRFGHVSPTTAQHVRDEFGGAIH-----VLDGGASDVG 186 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD--ETSTPQSPGMLKSHYAPR 233 +ESTI+++ +LRPG + + + + E D + + P++ G LK+HYAPR Sbjct: 187 IESTILDL-SRGFPALLRPGRVTPQDIADVLG-EAPRLPDGSDATAPRASGTLKAHYAPR 244 Query: 234 SQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEA--------------- 278 + + L + E L+ + E + S+ G+ +A Sbjct: 245 TPLAL--LPFVALEPLL----AARQADERVALVARASRAGRWADAEGVHFIAAPEDPHVY 298 Query: 279 AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 A L+ ++ D + + I +P+ IA+N+RL RAAA Sbjct: 299 ARELYGLLRALDRANVTRILIEKLPDTIEWIAVNDRLGRAAA 340 >gi|242371607|ref|ZP_04817181.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis M23864:W1] gi|242350674|gb|EES42275.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis M23864:W1] Length = 347 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 74/214 (34%), Positives = 118/214 (55%), Gaps = 8/214 (3%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-VDPLSLHL 83 +AIPTETVYGL ++++ A++++YE K RP+ NPLI HV + K +D L Sbjct: 34 VAIPTETVYGLGANAKDEVAVKKIYEAKGRPSDNPLIVHVHHRKQLDKFVEHIDERVSKL 93 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANR 142 + FWPGP++ +L L S + T L + R+P + L++ P+A PSAN Sbjct: 94 MEAFWPGPISFILPLKSGY-LCETVTGGLNSIAVRMPSHKIGRALLQVIDEPIAAPSANL 152 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202 SG+ S T H+ + +I I++G S+ GLEST+++ + RI RPG + E + Sbjct: 153 SGRPSPTTFDHVF-HDLNHKIDGIVNGDQSEEGLESTVLDC-TQFPFRIARPGSVTKEMI 210 Query: 203 KRAI--SVELEYCVDETSTPQSPGMLKSHYAPRS 234 ++ + SV+ + E P +PGM HY+P + Sbjct: 211 EKVLPESVQ-DIHFTENEKPIAPGMKYKHYSPDT 243 >gi|115352720|ref|YP_774559.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia ambifaria AMMD] gi|115282708|gb|ABI88225.1| translation factor SUA5 [Burkholderia ambifaria AMMD] Length = 342 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 97/321 (30%), Positives = 151/321 (47%), Gaps = 36/321 (11%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-L 83 +A PTETVYGL D+ NP A+ R+Y K RPA +P+I H+ A P L Sbjct: 27 VAFPTETVYGLGGDAANPEAVARIYAAKGRPANHPVIVHLPPGGDPGYWADDLPADAQAL 86 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY-----GH-PLA 136 FWPGPLTL+L + I + + R P + L+ + GH +A Sbjct: 87 IDAFWPGPLTLILKRHAR--IPDAVSGGQDSVGLRCPSHPVAQALLAAFSARRGGHGGVA 144 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSANR G +S T +H+ + ++DGG S++G+ESTI+++ +LRPG Sbjct: 145 APSANRFGHVSPTTAQHVRDE--FGDTVHVLDGGASEVGIESTILDL-SRGFPALLRPGH 201 Query: 197 LEIETLKRAI--SVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGN 254 + + + + + L D T+ P++ G LK+HYAPR+ + L P +AL Sbjct: 202 VTPQQIADVLGRAPRLPDGGDATA-PRASGTLKAHYAPRTPLSLM-----PFDALEPLLA 255 Query: 255 VPIKNIENAIISLNLSKTGKLKEA---------------AFNLFNYMKIADDSGASSIAF 299 + E + S+ G+ +A A +L+ ++ D + + I Sbjct: 256 AAQTDGERVALVARASRAGRWAQADGVHFVAAPEDPQAYARDLYGMLRALDRAQVARILV 315 Query: 300 SSIPNHGLGIAINNRLERAAA 320 +P IA+N+RL RAAA Sbjct: 316 EKLPETVEWIAVNDRLGRAAA 336 >gi|224477104|ref|YP_002634710.1| hypothetical protein Sca_1619 [Staphylococcus carnosus subsp. carnosus TM300] gi|222421711|emb|CAL28525.1| conserved hypothetical protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 348 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 76/243 (31%), Positives = 127/243 (52%), Gaps = 30/243 (12%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 A+ + E G +AIPTETVYGL ++++ ++++YE K RP+ NPLI H+ D + + Sbjct: 21 AIEEIAEVYREGELVAIPTETVYGLGANAKDDATVKKIYEAKGRPSDNPLIVHIYDEAQM 80 Query: 71 KKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129 + P + L +FWPGP++ +L PL L C RV G + + Sbjct: 81 DDFITEIPEKAQQLMDVFWPGPISFIL---------PLKEGFL---CKRVSGGLSSIAVR 128 Query: 130 TYGH------------PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 H P+A PSAN SG+ S T +H+ + + ++ I++G S+ GLE Sbjct: 129 MPSHPVGRAILKAVRLPIAAPSANLSGRPSPTTFEHV-NHDLNGKVAGIVNGDQSEEGLE 187 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAI--SVELEYCVDETSTPQSPGMLKSHYAPRSQ 235 ST+++ + RI RPG + E +++ I S++ + ++ T P +PGM HY+P + Sbjct: 188 STVLDC-TQYPFRIARPGAITAEMIEQVIPGSIDTDSVLN-TDKPIAPGMKYKHYSPDTP 245 Query: 236 VRL 238 V + Sbjct: 246 VAM 248 >gi|312797153|ref|YP_004030075.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia rhizoxinica HKI 454] gi|312168928|emb|CBW75931.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia rhizoxinica HKI 454] Length = 347 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 96/326 (29%), Positives = 149/326 (45%), Gaps = 33/326 (10%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS----DISMVKKHA 74 LDAG +A PTETVYGL D+RNP A+ R+Y K RPA +P+I H++ V+ Sbjct: 25 LDAGELVAFPTETVYGLGADARNPQAVARIYAAKGRPATHPVIVHLAPGDDPGGWVRTLG 84 Query: 75 SVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE-T 130 S + L FWPGPLTL+L D + + L+ V + + Sbjct: 85 SE---ARRLIDAFWPGPLTLILKRADAIPDAVSGGQDSIGLRCPSHPVAQALLRAFSDLQ 141 Query: 131 YGH-PLAIPSANRSGQISITNVKHI---LSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 +GH +A PSAN+ G +S T +H+ S+ ++DGG +G+ESTI+++ Sbjct: 142 HGHGGVAAPSANKFGHVSPTTAQHVRDEFGDSVH-----VLDGGACDVGIESTIIDLS-R 195 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETST-PQSPGMLKSHYAPRSQVRLRAIHV-- 243 +LRPG + + + + E +T P++ G LK+HYAPR+ + L + Sbjct: 196 GFPALLRPGRITPQQIADVLGAEPRLPDGSDATVPRASGTLKAHYAPRTPLALLPLEAIL 255 Query: 244 ------NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEA---AFNLFNYMKIADDSGA 294 P E L + + NL ++ A L+ ++ D + Sbjct: 256 CEVAAHAPHERLAVIARADLPQAKALCARPNLQFVAAPEDPHVYARELYRMLRELDGANV 315 Query: 295 SSIAFSSIPNHGLGIAINNRLERAAA 320 I +P A+N+RL RAAA Sbjct: 316 LRIFIEPLPATAEWAAVNDRLRRAAA 341 >gi|311108227|ref|YP_003981080.1| SUA5 domain-containing protein [Achromobacter xylosoxidans A8] gi|310762916|gb|ADP18365.1| SUA5 domain protein [Achromobacter xylosoxidans A8] Length = 350 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 89/319 (27%), Positives = 150/319 (47%), Gaps = 30/319 (9%) Query: 26 AIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA- 84 A PTETVYGL D+ NP A+ ++Y K RP+ +P+I H++ + A+ P L Sbjct: 29 AFPTETVYGLGADAENPQAVAKIYAAKGRPSNHPVIVHIAPQGDLSYWAAEVPQEARLLI 88 Query: 85 KLFWPGPLTLVLDLL-STTDIHPLSTANLKTACFRVPCGFTKKLIETYGHP-----LAIP 138 FWPGPLTL+L D ++ C P G P +A P Sbjct: 89 DAFWPGPLTLILKRAPHIVDTVSGGQDSIGIRCPSHPVAQALLAAFAAGKPNGQGGVAAP 148 Query: 139 SANRSGQISITNVKHILS---SSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR---IL 192 SAN+ GQ+S T +H+ S + +P +++GG S++G+ESTI+++ + +L Sbjct: 149 SANKFGQVSPTRAEHVRSEFPEEVAAGMP-VLEGGASEVGIESTILDLSRLDRGAGPVLL 207 Query: 193 RPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPR------SQVRLRAIHVNP- 245 RPG + ++ + V++ + + P++ G LK+HYAPR + RLR + Sbjct: 208 RPGHISAAQIEAVLGVQV--FAPDAAAPRASGTLKAHYAPRTALELATDARLRDVVQGQG 265 Query: 246 ----REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSS 301 + ++ +G+ P + + +A L+ ++ D G + I + Sbjct: 266 LPEGKVVVVAYGDRPAALDARVQWQAVPADPARYAQA---LYGLLRDLDQQGYARIIVQA 322 Query: 302 IPNHGLGIAINNRLERAAA 320 P A+N+R+ RAAA Sbjct: 323 PPATDDWHAVNDRIGRAAA 341 >gi|78067422|ref|YP_370191.1| translation factor SUA5 [Burkholderia sp. 383] gi|77968167|gb|ABB09547.1| translation factor SUA5 [Burkholderia sp. 383] Length = 342 Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 97/321 (30%), Positives = 151/321 (47%), Gaps = 36/321 (11%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-L 83 +A PTETVYGL D+ NP A+ R+Y K RPA +P+I H+ A P L Sbjct: 27 VAFPTETVYGLGGDAANPEAVARIYAAKGRPANHPVIVHLPPGGDPGYWADDLPADAQAL 86 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY-----GH-PLA 136 FWPGPLTL+L + I + + R P + L+ + GH +A Sbjct: 87 IDAFWPGPLTLILKRHAR--IPDAVSGGQDSVGLRCPSHPVAQALLAAFSARRGGHGGVA 144 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSANR G +S T +H+ + ++DGG S++G+ESTI+++ +LRPG Sbjct: 145 APSANRFGHVSPTTAQHVRDE--FGDTVHVLDGGASEVGIESTILDL-SRGFPALLRPGH 201 Query: 197 LEIETLKRAI--SVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGN 254 + + + + + L D T+ P++ G LK+HYAPR+ + L P +AL Sbjct: 202 VTPQQIADVLGRAPRLPDGSDATA-PRASGTLKAHYAPRTPLALL-----PFDALEPLLA 255 Query: 255 VPIKNIENAIISLNLSKTGKLKEA---------------AFNLFNYMKIADDSGASSIAF 299 + E + S+ G+ +A A +L+ ++ D + + I Sbjct: 256 AAQTDGERVALVARASRAGRWAQADGVHFVAAPEDPQAYARDLYGMLRALDRAQVARILV 315 Query: 300 SSIPNHGLGIAINNRLERAAA 320 +P IA+N+RL RAAA Sbjct: 316 EKLPETVEWIAVNDRLGRAAA 336 >gi|242765157|ref|XP_002340917.1| translation initiation protein Sua5 [Talaromyces stipitatus ATCC 10500] gi|218724113|gb|EED23530.1| translation initiation protein Sua5 [Talaromyces stipitatus ATCC 10500] Length = 423 Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 78/232 (33%), Positives = 119/232 (51%), Gaps = 25/232 (10%) Query: 23 LPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK---------H 73 +P+ PTETVYGL D+ +++ +Y+ K+RP+ NPLI HV I MV + Sbjct: 55 IPVGFPTETVYGLGADATRSGSVQGIYKAKQRPSDNPLIVHVDSIEMVNRLLNPNGGSPT 114 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYG 132 + + L FWPG LT++L + + TANL T R+P F + LI Sbjct: 115 TKIPAIYEPLISRFWPGALTILLPNPKGSLLAKEVTANLPTFGVRMPSSAFARLLIHVTD 174 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192 PLA PSAN S + S T +H+ + +GG +G+EST+V+ +L Sbjct: 175 RPLAAPSANASTKPSPTTAEHVYHD--------LQNGGPCGVGVESTVVDGLTNPPA-VL 225 Query: 193 RPGGLEIETLKRA---ISVELEY---CVDETSTPQSPGMLKSHYAPRSQVRL 238 RPGG+ IE ++ +V++ Y + P+SPGM HY+P+++V L Sbjct: 226 RPGGIGIEEIRTCPGWENVQVGYNDSALQGKEAPRSPGMKYRHYSPKARVVL 277 >gi|240275733|gb|EER39246.1| translation initiation protein Sua5 [Ajellomyces capsulatus H143] Length = 473 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 82/249 (32%), Positives = 131/249 (52%), Gaps = 21/249 (8%) Query: 8 DSNALRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 ++ L +A E L + +P+A PTETVYGL D+ A++ +Y+ K+RP+ NPLI H Sbjct: 57 EAKVLLEAAEALRTSDIPVAFPTETVYGLGADATRSAAVQGIYKAKQRPSDNPLIVHQPK 116 Query: 67 ISMVK----------KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 ++ K + P+ L FWPGP+T +L + + + P T+ L+T Sbjct: 117 SRGLRLRTEGSQQGGKRNFIPPIYEPLISKFWPGPVT-ILPNQTPSPLAPEVTSTLRTFG 175 Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R+P + LI PLA PSAN S + S T +H+ + + I +I+DGG +G Sbjct: 176 VRMPSSPVARLLIYLADRPLAAPSANASTKPSPTTAQHVY-ADLQGRINMILDGGPCGVG 234 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAIS---VELEY---CVDETSTPQSPGMLKSH 229 +EST+V+ +LRPGG+ IE ++ V++ Y + P +PGM H Sbjct: 235 VESTVVDGLLYPPA-VLRPGGIGIEEIRACPGWEDVQIGYKDGALQGKEVPLAPGMKYKH 293 Query: 230 YAPRSQVRL 238 Y+P+++V L Sbjct: 294 YSPKAKVVL 302 >gi|27468631|ref|NP_765268.1| hypothetical protein SE1713 [Staphylococcus epidermidis ATCC 12228] gi|57867582|ref|YP_189286.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis RP62A] gi|251812173|ref|ZP_04826646.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis BCM-HMP0060] gi|282876476|ref|ZP_06285342.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis SK135] gi|293366080|ref|ZP_06612768.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis M23864:W2(grey)] gi|27316178|gb|AAO05312.1|AE016749_258 conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228] gi|57638240|gb|AAW55028.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis RP62A] gi|251804270|gb|EES56927.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis BCM-HMP0060] gi|281294728|gb|EFA87256.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis SK135] gi|291319803|gb|EFE60161.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis M23864:W2(grey)] gi|329726158|gb|EGG62630.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis VCU144] gi|329734140|gb|EGG70458.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis VCU045] gi|329735637|gb|EGG71920.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis VCU028] Length = 347 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 97/322 (30%), Positives = 158/322 (49%), Gaps = 30/322 (9%) Query: 18 FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-V 76 FLD GL +AIPTETVYGL ++RN A+ +Y K RP+ NPLI H+ I + + Sbjct: 28 FLDGGL-VAIPTETVYGLGANARNEEAVENIYVAKGRPSDNPLIVHIHSIEQLDDFVEYI 86 Query: 77 DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPL 135 D L FWPGP++ +L L + T L++ R+P + L++ P+ Sbjct: 87 DDKVKVLMDEFWPGPISFILPLKQGY-LCSKVTGGLESIAVRMPSHKIGRALLQIVDEPI 145 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 A PSAN SG+ S T +H+ + + ++ I++G + GLEST+++ + RI RPG Sbjct: 146 AAPSANISGRPSPTTFEHV-NRDLNGKVNGIVNGDQCEEGLESTVIDC-TQFPFRIARPG 203 Query: 196 GLE---IET-LKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL-----RAIHVNPR 246 + IET L +I+ ++ +E P +PGM HY+P + + + + I + + Sbjct: 204 SITQDMIETKLPHSINRQI---YEENEKPIAPGMKYKHYSPETPLTIVKDLNKKIANDDK 260 Query: 247 EALIRF-------GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF 299 + + F +P EN+I G K A NL+ + D + A+ Sbjct: 261 WSKVAFVFPESQRSLIP----ENSIFISLCENKGDFKSAGHNLYEILHELDQNEEIEEAY 316 Query: 300 -SSIPNHGLGIAINNRLERAAA 320 ++ AI NR+ +AA+ Sbjct: 317 IYGFEDNHHTEAIMNRMLKAAS 338 >gi|330818174|ref|YP_004361879.1| Sua5/YciO/YrdC/YwlC [Burkholderia gladioli BSR3] gi|327370567|gb|AEA61923.1| Sua5/YciO/YrdC/YwlC [Burkholderia gladioli BSR3] Length = 351 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 98/341 (28%), Positives = 161/341 (47%), Gaps = 38/341 (11%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV---SDI 67 A+ +A L AG +A PTETVYGL D+ +P A+ R+Y K RP+ +P+I H+ D Sbjct: 18 AIEEAATKLAAGQLVAFPTETVYGLGADAESPEAVARIYAAKGRPSNHPVIVHLPPGGDP 77 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + D + L FWPGPLTL+L I + + R P ++ Sbjct: 78 GYWVESLPAD--AQKLIDAFWPGPLTLILK--RAAHIPDAVSGGQDSVALRCPSHPVAQR 133 Query: 127 LIETY-----GH-PLAIPSANRSGQISITNVKHI---LSSSICKEIPLIIDGGISKIGLE 177 L+ + GH +A PSANR G +S T +H+ S+ ++DGG +++G+E Sbjct: 134 LLAAFSALRGGHGGVAGPSANRFGHVSPTTAQHVREEFGDSVH-----VLDGGAAEVGIE 188 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAISV--ELEYCVDETSTPQSPGMLKSHYAPRSQ 235 STI+++ +LRPG + + + + L D T+ P++ G LK+HYAPR+ Sbjct: 189 STILDL-SRGFPALLRPGHVTPQQIAAVLGTVPRLPDGSDATA-PRASGTLKAHYAPRTP 246 Query: 236 VRL-----------RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFN 284 + L A AL+ + ++ AI ++ + A L++ Sbjct: 247 LALLPFDRLELLLDAAAEAGEPVALVARASS-ARDWSTAIGVHFVAAPEDPQAYARELYS 305 Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325 ++ D + + I +P+ +A+N+RL RAAA Q Sbjct: 306 LLRALDRAQVTRILIEQLPDTAEWVAVNDRLGRAAAAFEQG 346 >gi|300175748|emb|CBK21291.2| unnamed protein product [Blastocystis hominis] Length = 364 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 104/358 (29%), Positives = 174/358 (48%), Gaps = 46/358 (12%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 QI+ T N L + + GL ++ PTETVYGL ++ N A+ +++ K RP +P+I Sbjct: 7 QILKPTPENFLFCSQVLHNGGL-VSFPTETVYGLGANALNRDAVCDIFKAKNRPFNDPVI 65 Query: 62 CHVSDISMVKKHASV---DPLSLH-LAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTA 115 HV +++ V + H LA FWPGPLT+V + +I P LS K Sbjct: 66 VHVLSEEDAERYIDVSNEERRIFHSLATSFWPGPLTIV---MKAKEILPKELSAGTGKVG 122 Query: 116 CFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPL-IIDGG--I 171 FR P ++L+ G P+A PSAN+ G IS T +H+ S + P+ IIDGG + Sbjct: 123 -FRCPSQPLARELLRVSGLPIAAPSANKFGHISPTRAEHVYSD--LSDWPVQIIDGGDIV 179 Query: 172 SKIGLESTIVNVQCEK-KVRILRPGG---------LEIETLKRAISVELEYCVDETSTPQ 221 +G+EST++ + CEK ++ + R GG L+ + ++ +++ E Q Sbjct: 180 CDVGIESTVIGIDCEKQQIVLFRRGGVSEHAIMSCLQENGMAWSVWEPVKHVAMEMKEAQ 239 Query: 222 -SPGMLKSHYAPRSQVRLRAIHVNPREAL-------------IRFGNVPIKNIENAIISL 267 +PG L +HYAP L V+P+ + + F + E + L Sbjct: 240 VAPGQLITHYAPYCDTFL--AEVDPKAMMPQIVRERIESTVVLDFAGMLEGYRERCLKFL 297 Query: 268 NLSKTGKLKEAAFNLFNYMKIADD-SGASSIAFSSIPN--HGLGIAINNRLERAAAPR 322 +LS+ G + EA N++ ++ A+ G I +S+ L +++ +R+ RA + + Sbjct: 298 SLSEKGDVMEAMKNIYGKLREAERVEGVKLILLASLGQRKEELALSVMDRMVRATSGK 355 >gi|172061583|ref|YP_001809235.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia ambifaria MC40-6] gi|171994100|gb|ACB65019.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia ambifaria MC40-6] Length = 342 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 100/323 (30%), Positives = 151/323 (46%), Gaps = 40/323 (12%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-L 83 +A PTETVYGL D+ NP A+ R+Y K RPA +P+I H+ A P L Sbjct: 27 VAFPTETVYGLGGDAANPEAVARIYAAKGRPANHPVIVHLPPGGDPGYWADDLPADAQAL 86 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY-----GH-PLA 136 FWPGPLTL+L + I + + R P + L+ + GH +A Sbjct: 87 IDAFWPGPLTLILKRHAR--IPDAVSGGQDSVGLRCPSHPVAQALLAAFSARRGGHGGVA 144 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSANR G +S T +H+ + ++DGG S++G+ESTI+++ +LRPG Sbjct: 145 APSANRFGHVSPTTAQHVRDE--FGDTVHVLDGGASEVGIESTILDL-SRGFPALLRPGH 201 Query: 197 LE----IETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRF 252 + + L RA L D T+ P++ G LK+HYAPR+ + L P +AL Sbjct: 202 VTPRQIADVLGRA--PRLPDGGDATA-PRASGTLKAHYAPRTPLSLL-----PFDALEPL 253 Query: 253 GNVPIKNIENAIISLNLSKTGKLKEA---------------AFNLFNYMKIADDSGASSI 297 + E + S+ G+ +A A +L+ ++ D + + I Sbjct: 254 LAAAQTDGERVALVARASRAGRWAQADGVHFVAAPEDPQAYARDLYGMLRALDRAQVARI 313 Query: 298 AFSSIPNHGLGIAINNRLERAAA 320 +P IA+N+RL RAAA Sbjct: 314 LVEKLPETVEWIAVNDRLGRAAA 336 >gi|123473197|ref|XP_001319788.1| Sua5/YciO/YrdC/YwlC family protein [Trichomonas vaginalis G3] gi|121902579|gb|EAY07565.1| Sua5/YciO/YrdC/YwlC family protein [Trichomonas vaginalis G3] Length = 350 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 93/302 (30%), Positives = 140/302 (46%), Gaps = 24/302 (7%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 T L A + ++AG +A PTETVYGL A+ +++ K RP +PLI H + Sbjct: 7 TSEEDLTIAAKQINAGGLVAFPTETVYGLGAHLEE-KALAQIFAAKHRPYSDPLITHFAT 65 Query: 67 ISMVKKHASV-DPLSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 KK+ + D S + KL FWPGP+TLV +T + PL A RVP Sbjct: 66 AEAAKKYLILTDEESANFDKLAAAFWPGPMTLVAP--ATKAVPPLVMAGTGCVGVRVPSH 123 Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 + +E G P+A PSAN G +S T H++ L+I GG + IG+EST++ Sbjct: 124 PIAHRFLEICGEPVAAPSANLFGHVSPTTCDHVMYDLGQTPDLLVISGGNATIGIESTVL 183 Query: 182 NVQCEKKVRILRPGGLEIETLKRAI--SVELEYCVDETSTPQSPGMLKSHYAPRSQVRL- 238 + K + +LRPG + +++ I SV + V E SPG HYAP L Sbjct: 184 RLHG-KNITVLRPGFITAGQVEQVIPGSVTRDAGVQEKLA--SPGHETRHYAPNMPTYLV 240 Query: 239 ----------RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKI 288 + + + P LI F + +LS G + +A N++N ++ Sbjct: 241 RKQGSKDAVEQTVSLTPDTVLIDFNRTFSTASSQVLRYFDLSPVGNVADAVRNVYNVLRD 300 Query: 289 AD 290 A+ Sbjct: 301 AE 302 >gi|239818049|ref|YP_002946959.1| Sua5/YciO/YrdC/YwlC family protein [Variovorax paradoxus S110] gi|239804626|gb|ACS21693.1| Sua5/YciO/YrdC/YwlC family protein [Variovorax paradoxus S110] Length = 333 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 100/338 (29%), Positives = 163/338 (48%), Gaps = 29/338 (8%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 I+ +A+ +A L AG +A PTETVYGL D+ + A+ +++ K RPA +PLI Sbjct: 2 ILDGQSPDAIAEAVRVLRAGGLVAFPTETVYGLGADATSDMAVAGIFKAKGRPADHPLIV 61 Query: 63 HVS----DISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 HV+ + + A + P + L + FWPGPLTL+ + + + T Sbjct: 62 HVAAGIKGTEALSRFAQPLPPFAQKLVQAFWPGPLTLI--VTRQPGVAAAAAGGQDTIGL 119 Query: 118 RVPCG-FTKKLIET---YGHP-LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172 R P + L+E G P LA PSANR G++S T +H+ + +IDGG Sbjct: 120 RCPSHPVAQALLEACAEQGVPGLAGPSANRFGRVSPTTAQHVHDE--FGDALTVIDGGAC 177 Query: 173 KIGLESTIVNVQCEKKVRI-LRPGGLEIETLKRAISVELE-YCVDETSTPQSPGMLKSHY 230 ++G+ESTIV+ C + + LRPG + ++ A L V ET P++ G L++HY Sbjct: 178 EVGIESTIVD--CSRGAPVLLRPGLITRAQIEAAAGERLSNREVLETPDPRASGTLEAHY 235 Query: 231 APRSQVRL---RAIH-----VNPREALIR-FGNVPIKNIENAIISLNLSKTGKLKEAAFN 281 AP +++RL +AI + P A I + +++ ++ + +A Sbjct: 236 APNAKLRLMDAKAIQAGLDVLGPGAAHIAVWTRAEVRSHSQRVLQRRMPD--DAAASAHQ 293 Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 LF ++ D G I + P+ + +RL RA+ Sbjct: 294 LFAVLREFDAEGVKLIWVETPPDTPEWEGVRDRLHRAS 331 >gi|188591315|ref|YP_001795915.1| hypothetical protein RALTA_A0528 [Cupriavidus taiwanensis LMG 19424] gi|170938209|emb|CAP63195.1| conserved hypothetical protein, Sua5/YciO/YrdC/YwlC family; putative double-stranded RNA binding domain [Cupriavidus taiwanensis LMG 19424] Length = 329 Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 90/320 (28%), Positives = 150/320 (46%), Gaps = 16/320 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +A L+AG +A PTETVYGL D+ NP A+ R++ +K RP+ +P+I HV D + + Sbjct: 11 LDEAVRLLEAGQLVAFPTETVYGLGADAENPAAVGRIFALKGRPSNHPVIVHVVDGADIG 70 Query: 72 KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCGFTKKL 127 P + L FWPGPLTL+L + D + L+ V + Sbjct: 71 YWTDDVPAAAQQLIDAFWPGPLTLILKRAAHIDAAVAGGQDSIGLRCPSHPVAQALLSRF 130 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV-QCE 186 G +A PSAN+ GQ+S T +H+ + +++G ++G+ESTIV++ + + Sbjct: 131 KRGRGG-IAAPSANKFGQVSPTTAQHVREE--FGDAVYVLEGDGVEVGIESTIVDLSRLD 187 Query: 187 KKVR--ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244 + + +LRPG + + L + + E D + S G LK+HYAP + + L Sbjct: 188 QGIGPVLLRPGAVTVGMLAQVLG-EAPLPPDAAAPRAS-GTLKAHYAPHTPLLLADAQAA 245 Query: 245 PREALIRFGNVPIKNIENAIISLN----LSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300 + + + A ++ + G A L+ ++ D G + + F Sbjct: 246 AARLEALPADARVAWVGRAPLADQRCTWVQAPGDAAAYAQELYRLLRKLDRQGYTQLVFE 305 Query: 301 SIPNHGLGIAINNRLERAAA 320 +P + +RLERAAA Sbjct: 306 VLPEGQDWAGVRDRLERAAA 325 >gi|157871880|ref|XP_001684489.1| hypothetical protein [Leishmania major strain Friedlin] gi|68127558|emb|CAJ05637.1| conserved hypothetical protein [Leishmania major strain Friedlin] Length = 386 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 98/335 (29%), Positives = 151/335 (45%), Gaps = 44/335 (13%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 T LR+A + L G +AIPTETVYGL ++ +A++ +Y +K RP +PLICHV Sbjct: 7 TSPEDLRRAADALVQGKLVAIPTETVYGLGGNALIGSAVKSIYAVKGRPPTDPLICHVYT 66 Query: 67 ISMV------KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 + K L+ + WPGPLT+V T + T R+P Sbjct: 67 LDGACRLWDQKWDEGAVELACTIGAALWPGPLTIVCKANPT--LPDCVTGGSGYVGARIP 124 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP-LIIDGGISKIGLES 178 KL+E P+A PSAN G +S T +H+ ++ LIIDGG S IG+ES Sbjct: 125 NNPVALKLLEMVDAPVAAPSANTFGHVSPTTAQHVYDDLAARDPELLIIDGGQSAIGIES 184 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAIS-------VELE----YCVDETSTPQSPGMLK 227 T+ V+ + V +LR G + + + RAI+ VE+ C + SPG L Sbjct: 185 TVAKVESKDLVVVLRRGCITVSMIHRAIAGRYPQTRVEIRDTRIMCDPAKALMVSPGQLL 244 Query: 228 SHYAPRSQVRL--------------------RAIHVNPR-EALIRFGNVPIKNIENAIIS 266 +HY+P L R V P E ++ N + ++A +S Sbjct: 245 THYSPHVPSSLLTPGSLGALTASADVPVYVHRGKDVVPLCETIVLDFNGYLSRFKDACLS 304 Query: 267 L-NLSKTGKLKEAAFNLFNYMKIADD-SGASSIAF 299 ++S G +E + +F+ ++ + GA + F Sbjct: 305 YHDMSPDGNPEEGCYAVFDALRATETVKGAKGLVF 339 >gi|299136790|ref|ZP_07029973.1| Sua5/YciO/YrdC/YwlC family protein [Acidobacterium sp. MP5ACTX8] gi|298601305|gb|EFI57460.1| Sua5/YciO/YrdC/YwlC family protein [Acidobacterium sp. MP5ACTX8] Length = 343 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 106/337 (31%), Positives = 167/337 (49%), Gaps = 31/337 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + +A + L +G +A TETVYGL D+ + A+ R++E K+RP+ +PLI H++ Sbjct: 10 DPGDVSRAADLLRSGGTVAFATETVYGLGADALSEAAVARIFEAKQRPSWDPLIVHLASA 69 Query: 68 SMVKKHASVDP-----LSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPC 121 + + +V+ ++L LA+ FWPGPLTL LL + P S TA RVP Sbjct: 70 TEISSITNVEGELQRRVNL-LAETFWPGPLTL---LLPRKVVVPDSVTAGRPLVGVRVPS 125 Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L++ G P+A PSAN G S T H+L + + I ++D G + +GLEST+ Sbjct: 126 HPAALALLQAAGLPIAAPSANTFGHTSPTTAAHVL-ADLEGRIDAVLDAGPTSVGLESTV 184 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELE-YCVDETSTPQ------SPGMLKSHYAPR 233 ++ + + + RPG + E + A V +E + V ST Q SPG+ HYAPR Sbjct: 185 LD-PAQTPMVLYRPGAVTAEQIAAATGVPVEIFRVAGMSTAQPKESLPSPGVGIRHYAPR 243 Query: 234 SQVRL-----RAIHVNPREALIRFGN-----VPIKNIENAIISLNLSKTGKLKEAAFNLF 283 +++ L A+ RE L + G +P +A+ + + + A Sbjct: 244 ARLILVEGSEEALRQTLREVLSQGGERVGVLLPDGWRLDAVALVEPWAAWEDQAALAAAL 303 Query: 284 NYMKIADDSGASSIAFSSIP-NHGLGIAINNRLERAA 319 A D ++I +P + GL AI +RLE+AA Sbjct: 304 FAGLRALDDRGATIILCPLPLSGGLKDAIRDRLEKAA 340 >gi|189911316|ref|YP_001962871.1| SUA5 family translation factor [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775992|gb|ABZ94293.1| Translation factor, SUA5 family [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] Length = 338 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 105/349 (30%), Positives = 165/349 (47%), Gaps = 57/349 (16%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S+ +R + + G + PTETV+G+ S N A R+Y+IK RP+ NPLI H S I Sbjct: 6 SSDVRLLADLIRKGGVVVFPTETVFGIGAASDNEDACLRIYQIKGRPSDNPLIAHFSSID 65 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD--IHPLSTANLKTACFRVPCG-FTK 125 +KK V+ ++ L F PGP TLV L TD I P L T R+P + Sbjct: 66 AIKKVCYVNEVANQLLCEFSPGPFTLV---LPKTDPKIFP---KQLPTLAVRIPKNPVIR 119 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI----SKIGLESTIV 181 + IE G P++ PSAN SG+ S+T + + + + I+DG + +G+EST++ Sbjct: 120 EWIEACGSPISAPSANLSGRPSLTRM-----TDVVRYFDGIVDGILIAEEPNLGIESTVL 174 Query: 182 NVQCEKKVRILRPGGLEIETLKRAI-------------SVELEYCVDETSTPQSPGMLKS 228 + E V +LRPG +E + L+R + S + +++ P SPGM Sbjct: 175 GLTTEVPV-LLRPGSIESQALRRFLPNLVIPNEIKSKDSKSEDSKTNQSFVPLSPGMKYK 233 Query: 229 HYAPRSQVRLRAIHV----------NPREALI--RFGNVPIKNIENA----IISLNLSKT 272 HYAP ++V L + +P+ A I FG+ + + ++ N+ Sbjct: 234 HYAPNAKVVLLETEIFLSTFSKQGMDPKFAWIGFSFGSKTLPEVLGGNRVLCVANNIDYM 293 Query: 273 GKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLG-IAINNRLERAAA 320 K L+ + + D G + I + +P G + NRLE+AAA Sbjct: 294 AK-------LYAFFESCDLEGYNRI-YCEMPREEEGREGLLNRLEKAAA 334 >gi|221200181|ref|ZP_03573224.1| Sua5/YciO/YrdC family protein [Burkholderia multivorans CGD2M] gi|221206666|ref|ZP_03579678.1| Sua5/YciO/YrdC family protein [Burkholderia multivorans CGD2] gi|221173321|gb|EEE05756.1| Sua5/YciO/YrdC family protein [Burkholderia multivorans CGD2] gi|221180420|gb|EEE12824.1| Sua5/YciO/YrdC family protein [Burkholderia multivorans CGD2M] Length = 342 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 97/325 (29%), Positives = 152/325 (46%), Gaps = 44/325 (13%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-L 83 +A PTETVYGL D+ +P A+ R+Y K RPA +P+I H+ A+ P L Sbjct: 27 VAFPTETVYGLGGDAASPDAVARIYAAKGRPANHPVIVHLPPGGDPAYWAAELPADAQKL 86 Query: 84 AKLFWPGPLTLVLDLLSTTDIHP----LSTANLKTACFRVPCG-FTKKLIETY-----GH 133 FWPGPLTL+L HP + + R P + L+ + GH Sbjct: 87 IDAFWPGPLTLILKR------HPRIPDAVSGGQDSVGLRCPSHPVAQALLAAFSARRGGH 140 Query: 134 -PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192 +A PSANR G +S T +H+ + ++DGG S++G+ESTI+++ +L Sbjct: 141 GGVAAPSANRFGHVSPTTAQHVRDE--FGDTVHVLDGGASEVGIESTILDL-SRGFPALL 197 Query: 193 RPGGLEIETLKRAI--SVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALI 250 RPG + + + + + L D T+ P++ G LK+HYAPR+ + L P +AL Sbjct: 198 RPGHVTPQQIADVLGRAPRLPDGSDATA-PRASGTLKAHYAPRTPLALL-----PFDALE 251 Query: 251 RFGNVPIKNIENAIISLNLSKTGKLKEA---------------AFNLFNYMKIADDSGAS 295 + E + S+ G+ +A A +L+ ++ D + + Sbjct: 252 PLLAAAQADGERVALVARASRAGRWAQADGVHFVAAPEDPQAYARDLYGMLRALDRAQVA 311 Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320 I +P IA+N+RL RAAA Sbjct: 312 RILVEKLPETVEWIAVNDRLGRAAA 336 >gi|161523856|ref|YP_001578868.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia multivorans ATCC 17616] gi|189351383|ref|YP_001947011.1| putative translation factor [Burkholderia multivorans ATCC 17616] gi|160341285|gb|ABX14371.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia multivorans ATCC 17616] gi|189335405|dbj|BAG44475.1| putative translation factor [Burkholderia multivorans ATCC 17616] Length = 342 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 97/325 (29%), Positives = 152/325 (46%), Gaps = 44/325 (13%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-L 83 +A PTETVYGL D+ +P A+ R+Y K RPA +P+I H+ A+ P L Sbjct: 27 VAFPTETVYGLGGDAASPDAVARIYAAKGRPANHPVIVHLPPGGDPAYWAAELPADAQKL 86 Query: 84 AKLFWPGPLTLVLDLLSTTDIHP----LSTANLKTACFRVPCG-FTKKLIETY-----GH 133 FWPGPLTL+L HP + + R P + L+ + GH Sbjct: 87 IDAFWPGPLTLILKR------HPRIPDAVSGGQDSVGLRCPSHPVAQALLAAFSARRGGH 140 Query: 134 -PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192 +A PSANR G +S T +H+ + ++DGG S++G+ESTI+++ +L Sbjct: 141 GGVAAPSANRFGHVSPTTAQHVRDE--FGDTVHVLDGGASEVGIESTILDL-SRGFPALL 197 Query: 193 RPGGLEIETLKRAI--SVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALI 250 RPG + + + + + L D T+ P++ G LK+HYAPR+ + L P +AL Sbjct: 198 RPGHVTPQQIADVLGRAPRLPDGSDATA-PRASGTLKAHYAPRTPLALL-----PFDALE 251 Query: 251 RFGNVPIKNIENAIISLNLSKTGKLKEA---------------AFNLFNYMKIADDSGAS 295 + E + S+ G+ +A A +L+ ++ D + + Sbjct: 252 PLLAAAQADGERVALVARASRAGRWAQADGVHFVAAPEDPQAYARDLYGMLRALDRAQVA 311 Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320 I +P IA+N+RL RAAA Sbjct: 312 RILVEKLPETVEWIAVNDRLGRAAA 336 >gi|242241522|ref|ZP_04795967.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis W23144] gi|242235065|gb|EES37376.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis W23144] Length = 347 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 78/223 (34%), Positives = 121/223 (54%), Gaps = 13/223 (5%) Query: 18 FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-V 76 FLD GL +AIPTETVYGL ++RN A+ +Y K RP+ NPLI H+ I + + Sbjct: 28 FLDGGL-VAIPTETVYGLGANARNEEAVENIYVAKGRPSDNPLIVHIHSIEQLDDFVEHI 86 Query: 77 DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPL 135 D L FWPGP++ +L L + T L++ R+P + L++ P+ Sbjct: 87 DDKVKVLMDEFWPGPISFILPLKQGY-LCSKVTGGLESIAVRMPSHKIGRALLQIVDEPI 145 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 A PSAN SG+ S T +H+ + + ++ I++G + GLEST+++ + RI RPG Sbjct: 146 AAPSANISGRPSPTTFEHV-NRDLNGKVNGIVNGDQCEEGLESTVIDC-TQFPFRIARPG 203 Query: 196 GLE---IET-LKRAISVELEYCVDETSTPQSPGMLKSHYAPRS 234 + IET L +I+ ++ +E P +PGM HY+P + Sbjct: 204 SITQDMIETKLPHSINRQI---YEENEKPIAPGMKYKHYSPET 243 >gi|319399598|gb|EFV87853.1| SUA5 domain protein [Staphylococcus epidermidis FRI909] Length = 347 Score = 115 bits (289), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 73/220 (33%), Positives = 118/220 (53%), Gaps = 7/220 (3%) Query: 18 FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-V 76 FLD GL +AIPTETVYGL ++RN A+ +Y K RP+ NPLI H+ I + + Sbjct: 28 FLDGGL-VAIPTETVYGLGANARNEEAVENIYVAKGRPSDNPLIVHIHSIEQLDDFVEHI 86 Query: 77 DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPL 135 D L FWPGP++ +L L + T L++ R+P + L++ P+ Sbjct: 87 DDKVKVLMDEFWPGPISFILPLKQGY-LCSKVTGGLESIAVRMPSHKIGRALLQIVDEPI 145 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 A PSAN SG+ S T +H+ + + ++ I++G + GLEST+++ + RI RPG Sbjct: 146 AAPSANISGRPSPTTFEHV-NRDLNGKVNGIVNGDQCEEGLESTVIDC-TQFPFRIARPG 203 Query: 196 GLEIETLKRAISVELEYCV-DETSTPQSPGMLKSHYAPRS 234 + + ++ + + + +E P +PGM HY+P + Sbjct: 204 SITQDMIESRLPHSINRQIYEENEKPIAPGMKYKHYSPET 243 >gi|302414222|ref|XP_003004943.1| SUA5 [Verticillium albo-atrum VaMs.102] gi|261356012|gb|EEY18440.1| SUA5 [Verticillium albo-atrum VaMs.102] Length = 414 Score = 115 bits (288), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 76/201 (37%), Positives = 108/201 (53%), Gaps = 23/201 (11%) Query: 24 PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS--- 80 P +P ETVYGL D+ A++ +Y K RP+ NPLI HVSD++M+++ + P S Sbjct: 188 PRRLPDETVYGLGADATRSAAVKGIYAAKGRPSDNPLIIHVSDLTMLRRFLAPPPPSDTP 247 Query: 81 -----------------LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 L + FWPGPLT++L L S + + P TA L T R+P Sbjct: 248 DAVVTAAAAADPIPAIYKPLLERFWPGPLTILLPLPSPSPLAPEVTAGLPTFAVRMPASP 307 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 LI PLA PSAN S + S T +H+L + I LI+D G +G+EST+V+ Sbjct: 308 LALSLIALADTPLAGPSANASTKPSPTAARHVL-DDLAGRIELILDAGPCDVGVESTVVD 366 Query: 183 VQCEKKVRILRPGGLEIETLK 203 C+ V ILRPGG+ ++ L+ Sbjct: 367 GLCDPPV-ILRPGGIALDRLR 386 >gi|145589991|ref|YP_001156588.1| Sua5/YciO/YrdC/YwlC family protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048397|gb|ABP35024.1| translation factor SUA5 [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 362 Score = 115 bits (288), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 97/357 (27%), Positives = 162/357 (45%), Gaps = 56/357 (15%) Query: 7 TDSNALR------KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 +DS AL+ +A + L G +A PTETVYGL D++NP AI++++ K RP+ +PL Sbjct: 3 SDSTALQSSVVINEAVQSLRDGGLVAFPTETVYGLGADAKNPEAIKKIFSTKGRPSNHPL 62 Query: 61 ICHVS-----DISMVKKHASVDPL-------SLHLAKLFWPGPLTLVLDLLSTTDIHPLS 108 I H++ D + V + P +L L FWPGPLTLV + ++ L Sbjct: 63 IVHLAAPDRFDQAQVDWVPVLAPWVRDLSEDALKLINAFWPGPLTLVFKKDKSV-LNEL- 120 Query: 109 TANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISIT---NVKHILSSSICKEIP 164 T T R P ++L+ + + PSANR G++S T +V+H + Sbjct: 121 TGGQDTVAIRAPAHPIAQELLRKFKGGVVAPSANRFGKVSPTSAADVRHEFEGVLDL--- 177 Query: 165 LIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL----EYCVDETSTP 220 +++DGG ++G+ESTI+++ + +LRPG + + + + E + P Sbjct: 178 MVLDGGDCEVGIESTIIDLSSGDRAILLRPGVITPSVILAKTGIRVYQPGEVFSETELLP 237 Query: 221 QSPGMLKSHYAPRSQVRLR-------------------AIHVNPREALIRFGNVPIKNIE 261 + G LK+HYAP + +RL A+ V E+ + P+ + E Sbjct: 238 KVSGSLKAHYAPTTPLRLYASGRVLDALSEFPDTKSRVAVAVWDSESSLSHDGYPLVHFE 297 Query: 262 NAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERA 318 +I + + A L+ ++ D I F P + +RL+RA Sbjct: 298 EVVIPSDSATF------ASRLYRSLRDLDQQDWDLILFPEPPVGEEWDGVRDRLQRA 348 >gi|150020136|ref|YP_001305490.1| Sua5/YciO/YrdC/YwlC family protein [Thermosipho melanesiensis BI429] gi|149792657|gb|ABR30105.1| Sua5/YciO/YrdC/YwlC family protein [Thermosipho melanesiensis BI429] Length = 335 Score = 115 bits (288), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 91/330 (27%), Positives = 155/330 (46%), Gaps = 16/330 (4%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 ++I +++D + + C+ + +G +A PTETVYGL + N A+ +++++K R NPL Sbjct: 6 LKIKTLSDID-ISYPCKVIKSGGLVAFPTETVYGLGASASNGEAVDKIFKVKGRAKDNPL 64 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 I HV+ + + + V+ + + PGP+T V+ ++ + TA+L T R+P Sbjct: 65 IVHVAFVDTLYEIGEVNEKYRKVIEQITPGPITFVIRKKASFPKN--VTASLNTVGVRIP 122 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 + + Y P+A PSAN SG+ S T+ ++ K I IID G + G+ESTI Sbjct: 123 AHPVARKLCEYAGPIAAPSANLSGKPSPTDASAVIEDLFGK-IECIIDAGNTPFGIESTI 181 Query: 181 VNVQCEKKVRILRPGGLEIETLK----RAISVELEYCVDETSTPQSPGMLKSHYAPRSQV 236 +++ + + ILRPG + IE L I + TP++PGM HYAP V Sbjct: 182 IDLSGDIPI-ILRPGPITIEKLHELFGEVIIPDFVKNAKTVETPKAPGMKYRHYAPEKPV 240 Query: 237 -------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIA 289 R + I + +E + K + + L A NLF ++ Sbjct: 241 YIFERKNRKKIIEIAHKEKGVILCPKEHKRFYPGDMVVVLGSLENPYTIAQNLFRLLRQI 300 Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAA 319 D + G+ ++ NRL++A Sbjct: 301 DKMDFQIAYVEKLEERGILFSVMNRLKKAG 330 >gi|295397093|ref|ZP_06807205.1| Sua5/YciO/YrdC/YwlC family protein [Aerococcus viridans ATCC 11563] gi|294974685|gb|EFG50400.1| Sua5/YciO/YrdC/YwlC family protein [Aerococcus viridans ATCC 11563] Length = 341 Score = 115 bits (288), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 79/245 (32%), Positives = 122/245 (49%), Gaps = 19/245 (7%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I ++ + + L G +A PTETV+GL + N A++ +Y +K RP+ NPLI H++ Sbjct: 4 IIQASEIDEGAALLQDGQLVAFPTETVFGLGAIANNADAVKSVYTVKGRPSDNPLIVHIA 63 Query: 66 DIS-----MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRV 119 D M+ L L FWPGPLTLV+ + D P + T + T R+ Sbjct: 64 DPEDIFDYMIDNDPERHDLIEKLTTQFWPGPLTLVVPV--KPDTFPSVVTGGMDTVGIRL 121 Query: 120 PC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T+ LI G P+ PSAN SG+ S T V H++ I +++ ++IG+ES Sbjct: 122 PDHETTRDLIRATGFPIVGPSANISGKPSPTQVAHVM-HDFDGVIGGVVNAEPTRIGVES 180 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYC-------VDETSTPQSPGMLKSHYA 231 T++++ + + ILRPG + L ++ Y DE P++PGM HY+ Sbjct: 181 TVLDLTDSRGLIILRPGYITKTMLAEVVTGMPIYIGGTIANNADE--APKAPGMKYVHYS 238 Query: 232 PRSQV 236 P V Sbjct: 239 PNQPV 243 >gi|241662102|ref|YP_002980462.1| Sua5/YciO/YrdC/YwlC family protein [Ralstonia pickettii 12D] gi|240864129|gb|ACS61790.1| Sua5/YciO/YrdC/YwlC family protein [Ralstonia pickettii 12D] Length = 337 Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 80/235 (34%), Positives = 127/235 (54%), Gaps = 14/235 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +A L+AG +A PTETVYGL D+ NP AI ++Y K RP+ +P+I HV D + + Sbjct: 17 LDEAARRLEAGELVAFPTETVYGLGADAENPQAIAKIYAAKGRPSNHPVIVHVVDGADIS 76 Query: 72 KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 A P ++L L + FWPGPLTL+L I + R P + L+ Sbjct: 77 YWADDVPGIALQLIEAFWPGPLTLILK--RAPHIPAAVAGGQDSIGLRCPSHPVAQALLS 134 Query: 130 TYGHP---LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV-QC 185 + +A PSAN+ GQ+S T +H+ + +++G +G+ESTI+++ + Sbjct: 135 RFKRGRGGIAAPSANKFGQVSPTTAQHVRDE--FGDAVFVLEGDGVDVGIESTIIDLSRL 192 Query: 186 EKKVR--ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238 ++ + +LRPG + E ++R ++ EL D + S G LK+HYAPR+ + L Sbjct: 193 DQGIGPVLLRPGAITPEDIER-VTGELPAAPDAAAPRAS-GTLKAHYAPRTPLYL 245 >gi|145478343|ref|XP_001425194.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124392263|emb|CAK57796.1| unnamed protein product [Paramecium tetraurelia] Length = 425 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 101/337 (29%), Positives = 159/337 (47%), Gaps = 60/337 (17%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + L A + L G +A PTETVYGL +++N AI +++ KKRP +PLI HV D + Sbjct: 54 DELHIAAQLLHQGELVAFPTETVYGLGANAKNAQAILNIFKAKKRPLSDPLIVHVHDKNN 113 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLD--LLSTTDIHPLSTANLKTACFRVPC-GFTKK 126 + + A+LFWPGP T+VL L TT+I T ++ R+P + Sbjct: 114 I--YTDKPDFLDSFAELFWPGPFTIVLKSTQLETTEILSAGTGSI---GIRIPNHKVALE 168 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+E P+A PSAN IS T+ H+ + + + IID G S G+EST++ Sbjct: 169 LLEKANLPVAAPSANLFTHISPTSAAHVFNDFYDQRVH-IIDAGRSDNGIESTVIK-PLG 226 Query: 187 KKVRILRPGGLEIETLKR-----------AISVELEY------------------CVDET 217 ++ ILR G L ET+ + AI E +Y ++ Sbjct: 227 NELHILRLGSLAKETIMKKIGQSDKLKHFAIKYENKYMQIEETEEDIEKELEELNVLERK 286 Query: 218 STPQSPGMLKSHYAPR---------SQVRLRAIHVNPREA-LIRFGNVPIKNIENAIISL 267 ++ ++PG HY+ R S + I ++ +E+ +I FG+ ++N I L Sbjct: 287 NSMEAPGQFLKHYSARINSFIVTFQSNTIGQQIDLDLKESVIIDFGS----ELKNRIADL 342 Query: 268 N------LSKTGKLKEAAFNLFNYMKIAD-DSGASSI 297 + LS+ KEA FNL++ ++ A+ GA I Sbjct: 343 DEIKYKSLSENYDAKEAMFNLYDSLRWAELQQGAKQI 379 >gi|73662077|ref|YP_300858.1| translation factor [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72494592|dbj|BAE17913.1| putative translation factor [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 347 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 80/228 (35%), Positives = 125/228 (54%), Gaps = 15/228 (6%) Query: 18 FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77 F + GL IAIPTETVYGL D+RN AI+ +Y K RP+ NPLI H+ + ++ A D Sbjct: 28 FENGGL-IAIPTETVYGLGADARNEAAIKHIYSAKGRPSDNPLIVHIYKVEQIQ--AFTD 84 Query: 78 PLSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133 LS + L FWPGP++ ++ L +S L + R+P +++++ Sbjct: 85 KLSKEVEMLMNEFWPGPISFIVPLKKGYLCESVS-GGLDSIAVRMPSHPIGRQILKYVDM 143 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK-KVRIL 192 P+A PSAN SG+ S T +H+ + I I++G S+ GLEST+++ C + +I Sbjct: 144 PIAAPSANLSGRPSPTTFEHVY-RDLDGRIDGIVNGDQSEEGLESTVLD--CTRFPFKIA 200 Query: 193 RPGGLEIETLKRAI--SVELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238 RPG + ++ I SV +D + P +PGM HY+P + V++ Sbjct: 201 RPGSITKSMIEAVIPDSVTTIGTLD-SEKPIAPGMKYKHYSPDTPVKI 247 >gi|222152013|ref|YP_002561173.1| hypothetical protein MCCL_1770 [Macrococcus caseolyticus JCSC5402] gi|222121142|dbj|BAH18477.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 334 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 95/314 (30%), Positives = 151/314 (48%), Gaps = 25/314 (7%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVD 77 AG IAIPTETVYGLA D+ N A+ +++ K RP NPLI H+ +S ++ + Sbjct: 28 FKAGETIAIPTETVYGLAADATNREAVAAIFKAKGRPQDNPLIVHIHHLSQLEWFTHDIH 87 Query: 78 PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLA 136 + L FWPGP++ ++ + + TA L T R+P +LIE LA Sbjct: 88 AAAYKLMDYFWPGPISFIVPVKQGILAESV-TAGLNTVAVRMPAHKVAHQLIEMTDLLLA 146 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SG+ S T +H++ K I I+ ++G+EST+V+ + RI RPG Sbjct: 147 APSANTSGKPSPTKAEHVIHDMEGK-IFGIVQSEQVEVGIESTVVDC-SQYPFRIARPGA 204 Query: 197 LEIETLKRAISVELEYCVDET----STPQSPGMLKSHYAPRSQVRL----RAIHVNPREA 248 + L+ + C+ + P +PGM HYAP S + L ++ + EA Sbjct: 205 ITHNDLEMVVPG----CISDERIMGDKPIAPGMKYRHYAPDSPLELVEHFESLELAANEA 260 Query: 249 LIRFGNVPI--KNIENAIISLNLSKTGKLKEAA-FNLFNYMKIADD-SGASSIAFSSIPN 304 +I P+ K+ N L T + A ++L++ ++ AD G I + + Sbjct: 261 VI----APLSEKHKVNGGWFFKLGTTYEDSGGAMYDLYDALRSADSIEGIEKIYITDFTS 316 Query: 305 HGLGIAINNRLERA 318 + A+ NR+ +A Sbjct: 317 YNGSDALMNRINKA 330 >gi|134296828|ref|YP_001120563.1| translation factor SUA5 [Burkholderia vietnamiensis G4] gi|134139985|gb|ABO55728.1| translation factor SUA5 [Burkholderia vietnamiensis G4] Length = 345 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 96/322 (29%), Positives = 149/322 (46%), Gaps = 44/322 (13%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-L 83 +A PTETVYGL D+ NP A+ R+Y K RPA +P+I H+ A+ P L Sbjct: 27 VAFPTETVYGLGGDAANPEAVARIYAAKGRPANHPVIVHLPPGGDPGYWAADVPADARAL 86 Query: 84 AKLFWPGPLTLVLDLLSTTDIHP----LSTANLKTACFRVPCG-FTKKLIETY-----GH 133 FWPGPLTL+L HP + + R P + L+ + GH Sbjct: 87 IDAFWPGPLTLILKR------HPRIPDAVSGGQDSVGLRCPSHPVAQALLAAFSARRGGH 140 Query: 134 -PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192 +A PSANR G +S T +H+ + ++DGG S++G+ESTIV++ +L Sbjct: 141 GGVAAPSANRFGHVSPTTAQHVRDE--FGDTVHVLDGGASEVGIESTIVDL-SRGFPALL 197 Query: 193 RPGGLEIETLKRAI--SVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALI 250 RPG + + + + + L D T+ P++ G LK+HYAPR+ + L P +AL Sbjct: 198 RPGHVTPQQIADVLGRAPRLPDGSDATA-PRASGTLKAHYAPRTPLALL-----PFDALE 251 Query: 251 RFGNVPIKNIENAIISLNLSKTGKLKEA---------------AFNLFNYMKIADDSGAS 295 + E + S+ G+ +A A +L+ ++ D + + Sbjct: 252 PLLAAAQADGERVALVARASRAGRWAQADGVHFIAAPEDPHAYARDLYGMLRALDRAQVA 311 Query: 296 SIAFSSIPNHGLGIAINNRLER 317 I +P IA+N+RL R Sbjct: 312 RILVEKLPETVEWIAVNDRLGR 333 >gi|183221225|ref|YP_001839221.1| putative translation factor SUA5 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|167779647|gb|ABZ97945.1| Putative translation factor SUA5 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 318 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 102/333 (30%), Positives = 158/333 (47%), Gaps = 57/333 (17%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 + PTETV+G+ S N A R+Y+IK RP+ NPLI H S I +KK V+ ++ L Sbjct: 2 VVFPTETVFGIGAASDNEDACLRIYQIKGRPSDNPLIAHFSSIDAIKKVCYVNEVANQLL 61 Query: 85 KLFWPGPLTLVLDLLSTTD--IHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSAN 141 F PGP TLV L TD I P L T R+P ++ IE G P++ PSAN Sbjct: 62 CEFSPGPFTLV---LPKTDPKIFP---KQLPTLAVRIPKNPVIREWIEACGSPISAPSAN 115 Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGI----SKIGLESTIVNVQCEKKVRILRPGGL 197 SG+ S+T + + + + I+DG + +G+EST++ + E V +LRPG + Sbjct: 116 LSGRPSLTRM-----TDVVRYFDGIVDGILIAEEPNLGIESTVLGLTTEVPV-LLRPGSI 169 Query: 198 EIETLKRAI-------------SVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV- 243 E + L+R + S + +++ P SPGM HYAP ++V L + Sbjct: 170 ESQALRRFLPNLVIPNEIKSKDSKSEDSKTNQSFVPLSPGMKYKHYAPNAKVVLLETEIF 229 Query: 244 ---------NPREALI--RFGNVPIKNIENA----IISLNLSKTGKLKEAAFNLFNYMKI 288 +P+ A I FG+ + + ++ N+ K L+ + + Sbjct: 230 LSTFSKQGMDPKFAWIGFSFGSKTLPEVLGGNRVLCVANNIDYMAK-------LYAFFES 282 Query: 289 ADDSGASSIAFSSIPNHGLG-IAINNRLERAAA 320 D G + I + +P G + NRLE+AAA Sbjct: 283 CDLEGYNRI-YCEMPREEEGREGLLNRLEKAAA 314 >gi|282917465|ref|ZP_06325218.1| translation factor [Staphylococcus aureus subsp. aureus D139] gi|283771284|ref|ZP_06344173.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus H19] gi|282318667|gb|EFB49024.1| translation factor [Staphylococcus aureus subsp. aureus D139] gi|283459489|gb|EFC06582.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus H19] Length = 357 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 73/219 (33%), Positives = 116/219 (52%), Gaps = 7/219 (3%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVD 77 L+ GL I +PTETVYGLA ++ + A+ ++YE K RP+ NPLI H+ +K ++D Sbjct: 38 LNGGL-IGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKGQLKDFTYTLD 96 Query: 78 PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLA 136 P L + FWPGP++ +L L +S L + R+P ++L++ PLA Sbjct: 97 PRVEKLMQAFWPGPISFILPLKPGYLCRKVS-GGLSSVAVRMPSHSVGRQLLQIINEPLA 155 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SG+ S TN H+ + I I+ S+ GLEST+++ +I RPG Sbjct: 156 APSANLSGRPSPTNFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDC-TSFPYKIARPGS 213 Query: 197 LEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRS 234 + + + + + ++T P +PGM HY+P + Sbjct: 214 ITAAMITEILPNSIAHADYNDTEQPIAPGMKYKHYSPNT 252 >gi|329729335|gb|EGG65743.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus 21193] Length = 348 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 73/219 (33%), Positives = 115/219 (52%), Gaps = 7/219 (3%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVD 77 L+ GL I +PTETVYGLA ++ + A+ ++YE K RP+ NPLI H+ +K ++D Sbjct: 29 LNGGL-IGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKGQLKDFTYTLD 87 Query: 78 PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLA 136 P L + FWPGP++ +L L +S L + R+P ++L++ PLA Sbjct: 88 PRVEKLMQAFWPGPISFILPLKPGYLCRKVS-GGLSSVAVRMPSHSVGRQLLQIINEPLA 146 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SG+ S T H+ + I I+ S+ GLEST+++ +I RPG Sbjct: 147 APSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDC-TSFPYKIARPGS 204 Query: 197 LEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRS 234 + + + + Y ++T P +PGM HY+P + Sbjct: 205 ITAAMITEILPNSIAYADYNDTEQPIAPGMKYKHYSPNT 243 >gi|325192804|emb|CCA27207.1| conserved hypothetical protein [Albugo laibachii Nc14] Length = 370 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 103/364 (28%), Positives = 175/364 (48%), Gaps = 42/364 (11%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M +++ D+ ALR A L +G +A PTETVYGL ++ + A+ +++ K RP +PL Sbjct: 1 MAVLARFDAVALRDAAIQLKSGHLVAFPTETVYGLGANALDAEAVSLIFQAKGRPLTDPL 60 Query: 61 ICHVSD----ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 I HV+ + +++ A L L++ FWPGPLT++ ++ I PL TAN Sbjct: 61 IVHVAKAEDALPLIQLTAKGHKLFSILSEKFWPGPLTIIAP--ASDRIPPLVTANTGFVG 118 Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSS-SICKEIPLIIDGG--IS 172 R P +L++ P+A PSANR G +S T +H+++ C + ++ D S Sbjct: 119 VRCPAHPVALELLQAAKIPIAAPSANRFGHVSPTCAQHVMNDLGHCANLTVLDDSNEETS 178 Query: 173 KIGLESTIVN-VQCEKKVRILRPGGLEIETLKRAI-----SVELEYCV-------DETST 219 ++G+EST++ V +V I R GG + L + +E Y V E+S Sbjct: 179 RVGIESTVIRIVPSMDQVWIYRRGGTSEDALSSVLQENQKQLEATYTVIVKANTTSESSA 238 Query: 220 --PQSPGMLKSHYAPRSQVRLRAI-------------HVNPREALIRFGNVPIKNIE-NA 263 ++PG L HYAP + L I + E +I N + E + Sbjct: 239 KNQEAPGQLLKHYAPDVETHLIQICSDSNQNCALLTAEFDLAECVILDVNRQLAPFEAKS 298 Query: 264 IISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSIAFSSIPN--HGLGIAINNRLERAAA 320 + +LSK G + +A+ +F ++ ++ A + + I + H A+ +R+ RAA+ Sbjct: 299 LAYRDLSKDGDITKASQLIFEALRWSESVPKAKKVLMADIEHISHQHTAALRDRMFRAAS 358 Query: 321 PRNQ 324 + Q Sbjct: 359 GKVQ 362 >gi|187927597|ref|YP_001898084.1| Sua5/YciO/YrdC/YwlC family protein [Ralstonia pickettii 12J] gi|187724487|gb|ACD25652.1| Sua5/YciO/YrdC/YwlC family protein [Ralstonia pickettii 12J] Length = 337 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 97/325 (29%), Positives = 163/325 (50%), Gaps = 26/325 (8%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +A L+AG +A PTETVYGL D+ +P+AI ++Y K RP+ +P+I HV D + + Sbjct: 17 LDEAARRLEAGELVAFPTETVYGLGADAESPSAIAKIYAAKGRPSNHPVIVHVVDGADIS 76 Query: 72 KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 A P ++L L + FWPGPLTL+L I + R P + L+ Sbjct: 77 YWADDVPGIALQLIEAFWPGPLTLILK--RAPHIPAAVAGGQDSIGLRCPSHPVAQALLS 134 Query: 130 TYGHP---LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV-QC 185 + +A PSAN+ GQ+S T +H+ + +++G +G+ESTI+++ + Sbjct: 135 RFKRGRGGIAAPSANKFGQVSPTTAQHVRDE--FGDAVFVLEGDGVDVGIESTIIDLSRL 192 Query: 186 EKKVR--ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 ++ + +LRPG + E ++R ++ EL D + S G LK+HYAPR+ + L + Sbjct: 193 DQGIGPVLLRPGAITPEDIER-VTGELPAAPDAAAPRAS-GTLKAHYAPRTPLYL----L 246 Query: 244 NPREALIRFGNVPIKN---IENAIISLNLSKTGKLKEA-----AFNLFNYMKIADDSGAS 295 + + R +P A ++L ++ A A L+ ++ D G Sbjct: 247 SAADVSARLAALPADKRIVWLGAPVALRDGCDQRVAPATPAAYANALYALLRELDRGGYD 306 Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320 +I ++ + A+N+RL RAAA Sbjct: 307 AIWVETLADTPAWAAVNDRLRRAAA 331 >gi|94500117|ref|ZP_01306651.1| hypothetical protein RED65_13317 [Oceanobacter sp. RED65] gi|94427690|gb|EAT12666.1| hypothetical protein RED65_13317 [Oceanobacter sp. RED65] Length = 352 Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 94/333 (28%), Positives = 160/333 (48%), Gaps = 35/333 (10%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 ++A L G +A+PTETVYGLA D+RN A+ ++E K RP +PLI H+++ + ++K Sbjct: 15 QQAGAILKQGGLVAVPTETVYGLAADARNDIALASIFEAKGRPVDHPLILHIANSTELEK 74 Query: 73 HASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 A P ++ L + FWPG LTLVL + + T L T R+P ++ T Sbjct: 75 WARDVPHIAQSLVEAFWPGALTLVLK--KAEGVSDILTGGLDTVAIRMPNQPALLDILRT 132 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV- 189 + +A PSAN ++S T H++ + + + I ++DGG + G+ESTI+++ + Sbjct: 133 HELIVAAPSANPYEKLSPTQAHHVM-NGMGELIDAVVDGGACEQGIESTILDISDYPRTS 191 Query: 190 -RILRPGGLEIETLKRAISVELEYCVDET------STPQSPGMLKSHYAPRSQVRLRAIH 242 R+LRPG + + ++E +D+T + G K HY P++ + L Sbjct: 192 PRVLRPGPIS--------ASQIEAVLDQTVLQPDNHNEKVSGNKKVHYRPKATLVL--CE 241 Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSKT------------GKLKEAAFNLFNYMKIAD 290 +ALIR G + + II L+ + + A + ++ + D Sbjct: 242 TEQLDALIRNGVAGVFLYHSEIIETALNDSQLHGDQIALRLPADHQGYAQSWYSTLHEVD 301 Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAAPRN 323 ++ +PN+ I NR+ RAA N Sbjct: 302 CLMPDTVYTECVPNNTEWSGIANRIARAAIELN 334 >gi|82751717|ref|YP_417458.1| hypothetical protein SAB2000c [Staphylococcus aureus RF122] gi|82657248|emb|CAI81689.1| conserved hypothetical protein [Staphylococcus aureus RF122] Length = 348 Score = 112 bits (281), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 73/219 (33%), Positives = 115/219 (52%), Gaps = 7/219 (3%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVD 77 L+ GL I +PTETVYGLA ++ + A+ ++YE K RP+ NPLI H+ +K ++D Sbjct: 29 LNGGL-IGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKGQLKDFTYTLD 87 Query: 78 PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLA 136 P L K FWPGP++ +L L +S L + R+P ++L++ PLA Sbjct: 88 PSVEKLMKAFWPGPISFILPLKPGYLCRKVS-GGLSSVAVRMPSHSVGRQLLQIINEPLA 146 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SG+ S T H+ + I I+ S+ GLEST+++ +I RPG Sbjct: 147 APSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDC-TSFPYKIARPGS 204 Query: 197 LEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRS 234 + + + + + ++T P +PGM HY+P + Sbjct: 205 ITAAMITDILPNSIAHADYNDTEQPIAPGMKYKHYSPNT 243 >gi|160896437|ref|YP_001562019.1| Sua5/YciO/YrdC/YwlC family protein [Delftia acidovorans SPH-1] gi|160362021|gb|ABX33634.1| Sua5/YciO/YrdC/YwlC family protein [Delftia acidovorans SPH-1] Length = 332 Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 99/317 (31%), Positives = 155/317 (48%), Gaps = 31/317 (9%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL-SLHL 83 + +PTETVYGLA D+ N A+ +++ K RP +PLI HV+D + ++A PL + L Sbjct: 24 LGLPTETVYGLAADADNDAAVAQIFTAKGRPPNHPLIVHVADSGAITRYAREVPLFAQQL 83 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI---------ETYGHP 134 FWPGPLTL+L L ST + R P + +G Sbjct: 84 IDAFWPGPLTLILPRLPQA--ARASTGGQDSVGLRCPSHPVAHAVLAACRQLQPPVWG-- 139 Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI-LR 193 ++ PSAN+ G++S T H+ + L++DGG ++G+ESTIV+ C + V + LR Sbjct: 140 VSAPSANKFGRVSPTTAAHVADE--FGDTLLVLDGGACEVGIESTIVD--CTRGVPVLLR 195 Query: 194 PGGLEIETLKRAISVE-LEYCVDETSTPQSPGMLKSHYAPRSQVRL-------RAIHVNP 245 PG + + ++RA L + +TP++ G L +HYAP +QVRL + V Sbjct: 196 PGAITRDDIERACGQRPLSKEELQENTPRASGTLLAHYAPNAQVRLMDARQLQAGLDVLG 255 Query: 246 REA--LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303 +A L + P++ A ++L A LF ++ D+ GA I + P Sbjct: 256 ADARNLAVYHRTPLRTASRA-VTLRAMPA-DAAATARELFGALRDFDEVGARLIWIETPP 313 Query: 304 NHGLGIAINNRLERAAA 320 + + +RL RAAA Sbjct: 314 DTPDWEGVRDRLLRAAA 330 >gi|45657585|ref|YP_001671.1| hypothetical protein LIC11719 [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45600824|gb|AAS70308.1| conserved hypothetical protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 315 Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 94/321 (29%), Positives = 164/321 (51%), Gaps = 22/321 (6%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 ITDS + +A + L G + PTETVYG+ + + A +R+Y++K RP+ NPLI HV+ Sbjct: 10 ITDSTS--EAAKILLKGGLVVFPTETVYGIGASAFDIDACKRIYKVKNRPSDNPLILHVA 67 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125 + S +K +D + + + PGP+T + + L TA L + R+P T Sbjct: 68 NFSSLKDCGEIDDRANLVFQKLSPGPITGIFKKKNQN----LFTAGLDSVAIRIPSNPTA 123 Query: 126 -KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 ++ P+A PSAN SG+ S+T +++IL I K + I+ G +IG+EST+V+ Sbjct: 124 LGFLKFCKIPVAAPSANFSGKPSLTKIEYILEEFIGK-VDCILKGEEPQIGIESTVVDFI 182 Query: 185 CEKKVRILRPGGLEIETLKRAI-SVELEYCVDETS--TPQSPGMLKSHYAPRSQVRLR-A 240 + + +LRPG ++ L + ++ +D+ S TP SPG+ HY+P +V + + Sbjct: 183 SKPPI-LLRPGFIDKNDLSEILPDLQEMKSLDKNSYTTPISPGLKYKHYSPNCKVIFKNS 241 Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300 + P+E F + N++ + +S KE ++++ D G + A+ Sbjct: 242 LKGIPKE----FAQIGFHFESNSVYQVLVSSN---KEYMKEIYSFFVECDRRGITE-AWC 293 Query: 301 SIP-NHGLGIAINNRLERAAA 320 IP + NR+ +AA+ Sbjct: 294 EIPKEEKWKEVLINRISKAAS 314 >gi|24214909|ref|NP_712390.1| putative translation factor Sua5 [Leptospira interrogans serovar Lai str. 56601] gi|24195936|gb|AAN49408.1| putative translation factor Sua5 [Leptospira interrogans serovar Lai str. 56601] Length = 315 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 94/321 (29%), Positives = 164/321 (51%), Gaps = 22/321 (6%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 ITDS + +A + L G + PTETVYG+ + + A +R+Y++K RP+ NPLI HV+ Sbjct: 10 ITDSTS--EAAKILLKGGLVVFPTETVYGIGASAFDIDACKRIYKVKNRPSDNPLILHVA 67 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125 + S +K +D + + + PGP+T + + L TA L + R+P T Sbjct: 68 NFSSLKDCGEIDDRANLVFQKLSPGPITGIFKKKNQN----LFTAGLDSVAIRIPSNPTA 123 Query: 126 -KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 ++ P+A PSAN SG+ S+T +++IL I K + I+ G +IG+EST+V+ Sbjct: 124 LGFLKFCKIPVAAPSANFSGKPSLTKIEYILEEFIGK-VDCILKGEEPQIGIESTVVDFI 182 Query: 185 CEKKVRILRPGGLEIETLKRAI-SVELEYCVDETS--TPQSPGMLKSHYAPRSQVRLR-A 240 + + +LRPG ++ L + ++ +D+ S TP SPG+ HY+P +V + + Sbjct: 183 SKPPI-LLRPGFIDKNDLSEILPDLQEMKSLDKNSYTTPISPGLKYRHYSPNCKVIFKNS 241 Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300 + P+E F + N++ + +S KE ++++ D G + A+ Sbjct: 242 LKGIPKE----FAQIGFHFESNSVYQVLVSSN---KEYMKEIYSFFVECDRRGITE-AWC 293 Query: 301 SIP-NHGLGIAINNRLERAAA 320 IP + NR+ +AA+ Sbjct: 294 EIPKEEKWKEVLINRISKAAS 314 >gi|49484340|ref|YP_041564.1| hypothetical protein SAR2204 [Staphylococcus aureus subsp. aureus MRSA252] gi|49242469|emb|CAG41185.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MRSA252] gi|315193281|gb|EFU23679.1| hypothetical protein CGSSa00_02191 [Staphylococcus aureus subsp. aureus CGS00] Length = 348 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 72/219 (32%), Positives = 115/219 (52%), Gaps = 7/219 (3%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVD 77 L+ GL I +PTETVYGLA ++ + A+ ++YE K RP+ NPLI H+ +K ++D Sbjct: 29 LNGGL-IGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKGQLKDFTYTLD 87 Query: 78 PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLA 136 P L + FWPGP++ +L L +S L + R+P ++L++ PLA Sbjct: 88 PRVEKLMQAFWPGPISFILPLKPGYLCRKVS-GGLSSVAVRMPSHSVGRQLLQIINEPLA 146 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SG+ S T H+ + I I+ S+ GLEST+++ +I RPG Sbjct: 147 APSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDC-TSFPYKIARPGS 204 Query: 197 LEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRS 234 + + + + + ++T P +PGM HY+P + Sbjct: 205 ITAAMITEILPNSIAHADYNDTEQPIAPGMKYKHYSPNT 243 >gi|297210063|ref|ZP_06926456.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300910426|ref|ZP_07127878.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus TCH70] gi|296885263|gb|EFH24203.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300888268|gb|EFK83459.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus TCH70] Length = 357 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 72/219 (32%), Positives = 115/219 (52%), Gaps = 7/219 (3%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVD 77 L+ GL I +PTETVYGLA ++ + A+ ++YE K RP+ NPLI H+ +K ++D Sbjct: 38 LNGGL-IGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKGQLKDFTYTLD 96 Query: 78 PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLA 136 P L + FWPGP++ +L L +S L + R+P ++L++ PLA Sbjct: 97 PRVEKLMQAFWPGPISFILPLKPGYLCRKVS-GGLSSVAVRMPSHSVGRQLLQIINEPLA 155 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SG+ S T H+ + I I+ S+ GLEST+++ +I RPG Sbjct: 156 APSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDC-TSFPYKIARPGS 213 Query: 197 LEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRS 234 + + + + + ++T P +PGM HY+P + Sbjct: 214 ITAAMITEILPNSIAHADYNDTEQPIAPGMKYKHYSPNT 252 >gi|253731046|ref|ZP_04865211.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|257426255|ref|ZP_05602670.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus 55/2053] gi|257428913|ref|ZP_05605307.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus 65-1322] gi|257431522|ref|ZP_05607895.1| translation factor [Staphylococcus aureus subsp. aureus 68-397] gi|257434231|ref|ZP_05610581.1| translation factor [Staphylococcus aureus subsp. aureus E1410] gi|257437144|ref|ZP_05613184.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus M876] gi|282904785|ref|ZP_06312659.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus C160] gi|282906460|ref|ZP_06314311.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus Btn1260] gi|282909429|ref|ZP_06317244.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911681|ref|ZP_06319480.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus WBG10049] gi|282914965|ref|ZP_06322745.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus M899] gi|282920294|ref|ZP_06328018.1| translation factor [Staphylococcus aureus subsp. aureus C427] gi|282925505|ref|ZP_06333159.1| translation factor [Staphylococcus aureus subsp. aureus C101] gi|283958896|ref|ZP_06376341.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus A017934/97] gi|293509033|ref|ZP_06667820.1| translation factor [Staphylococcus aureus subsp. aureus 58-424] gi|293510948|ref|ZP_06669647.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus M809] gi|293547550|ref|ZP_06672225.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus M1015] gi|297589817|ref|ZP_06948457.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus MN8] gi|253725234|gb|EES93963.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|257270960|gb|EEV03133.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus 55/2053] gi|257274255|gb|EEV05772.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus 65-1322] gi|257277763|gb|EEV08433.1| translation factor [Staphylococcus aureus subsp. aureus 68-397] gi|257280870|gb|EEV11015.1| translation factor [Staphylococcus aureus subsp. aureus E1410] gi|257283537|gb|EEV13664.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus M876] gi|282312906|gb|EFB43307.1| translation factor [Staphylococcus aureus subsp. aureus C101] gi|282316154|gb|EFB46535.1| translation factor [Staphylococcus aureus subsp. aureus C427] gi|282321168|gb|EFB51499.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus M899] gi|282324446|gb|EFB54759.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus WBG10049] gi|282326699|gb|EFB56997.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330410|gb|EFB59928.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus Btn1260] gi|282594818|gb|EFB99795.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus C160] gi|283789614|gb|EFC28437.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus A017934/97] gi|290919670|gb|EFD96743.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus M1015] gi|291094737|gb|EFE25009.1| translation factor [Staphylococcus aureus subsp. aureus 58-424] gi|291466233|gb|EFF08760.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus M809] gi|297576945|gb|EFH95659.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus MN8] gi|312437466|gb|ADQ76537.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus TCH60] Length = 357 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 72/219 (32%), Positives = 115/219 (52%), Gaps = 7/219 (3%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVD 77 L+ GL I +PTETVYGLA ++ + A+ ++YE K RP+ NPLI H+ +K ++D Sbjct: 38 LNGGL-IGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKGQLKDFTYTLD 96 Query: 78 PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLA 136 P L + FWPGP++ +L L +S L + R+P ++L++ PLA Sbjct: 97 PRVEKLMQAFWPGPISFILPLKPGYLCRKVS-GGLSSVAVRMPSHSVGRQLLQIINEPLA 155 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SG+ S T H+ + I I+ S+ GLEST+++ +I RPG Sbjct: 156 APSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDC-TSFPYKIARPGS 213 Query: 197 LEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRS 234 + + + + + ++T P +PGM HY+P + Sbjct: 214 ITAAMITEILPNSIAHADYNDTEQPIAPGMKYKHYSPNT 252 >gi|134107902|ref|XP_777333.1| hypothetical protein CNBB1350 [Cryptococcus neoformans var. neoformans B-3501A] gi|50260023|gb|EAL22686.1| hypothetical protein CNBB1350 [Cryptococcus neoformans var. neoformans B-3501A] Length = 488 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 80/206 (38%), Positives = 113/206 (54%), Gaps = 16/206 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +A + L + +A+PTETVYGLA S +P A + +Y+IK RP+ NPLI HVS + M++ Sbjct: 64 LEEASKHLHSHKTVAVPTETVYGLAASSLDPEACKMIYKIKNRPSDNPLIIHVSSLDMLR 123 Query: 72 K----HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + S L L L FWPGPL+L+ S + +T R+P Sbjct: 124 RLLPPDYSFSSLYLALINAFWPGPLSLLFPSPSPP-----PSPAPQTNAIRMPSHPLALA 178 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSS-SICKEIPLIIDGGISKIGLESTIVNVQC 185 LI PL+ PSAN SG+ S T +H+ + + + IIDGG +G+EST+VN Sbjct: 179 LIAHSNLPLSAPSANSSGRPSPTKAQHVWNDLNGSDGLGCIIDGGDCGVGVESTVVNGLE 238 Query: 186 EK-----KVRILRPGGLEIETLKRAI 206 K KV ILRPGGL +E +K+ + Sbjct: 239 WKEGGGGKVDILRPGGLGVEQIKKIV 264 >gi|253733050|ref|ZP_04867215.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus TCH130] gi|253728958|gb|EES97687.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus TCH130] Length = 357 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 72/219 (32%), Positives = 115/219 (52%), Gaps = 7/219 (3%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVD 77 L+ GL I +PTETVYGLA ++ + A+ ++YE K RP+ NPLI H+ +K ++D Sbjct: 38 LNGGL-IGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKGQLKDFTYTLD 96 Query: 78 PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLA 136 P L + FWPGP++ +L L +S L + R+P ++L++ PLA Sbjct: 97 PRVEKLMQAFWPGPISFILPLKPGYLCRKVS-GGLSSVAVRMPSHSVGRQLLQIINEPLA 155 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SG+ S T H+ + I I+ S+ GLEST+++ +I RPG Sbjct: 156 APSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDC-TSFPYKIARPGS 213 Query: 197 LEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRS 234 + + + + + ++T P +PGM HY+P + Sbjct: 214 ITAAMITEILPNSIAHADYNDTEQPIAPGMKYKHYSPNT 252 >gi|21283769|ref|NP_646857.1| hypothetical protein MW2040 [Staphylococcus aureus subsp. aureus MW2] gi|49486909|ref|YP_044130.1| hypothetical protein SAS2019 [Staphylococcus aureus subsp. aureus MSSA476] gi|21205211|dbj|BAB95905.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MW2] gi|49245352|emb|CAG43827.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MSSA476] Length = 348 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 72/219 (32%), Positives = 115/219 (52%), Gaps = 7/219 (3%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVD 77 L+ GL I +PTETVYGLA ++ + A+ ++YE K RP+ NPLI H+ +K ++D Sbjct: 29 LNGGL-IGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKGQLKDFTYTLD 87 Query: 78 PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLA 136 P L + FWPGP++ +L L +S L + R+P ++L++ PLA Sbjct: 88 PRVEKLMQAFWPGPISFILPLKPGYLCRKVS-GGLSSVAVRMPSHSVGRQLLQIINEPLA 146 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SG+ S T H+ + I I+ S+ GLEST+++ +I RPG Sbjct: 147 APSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDC-TSFPYKIARPGS 204 Query: 197 LEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRS 234 + + + + + ++T P +PGM HY+P + Sbjct: 205 ITAAMITEILPNSIAHADYNDTEQPIAPGMKYKHYSPNT 243 >gi|58263054|ref|XP_568937.1| cell growth and/or maintenance-related protein [Cryptococcus neoformans var. neoformans JEC21] gi|57223587|gb|AAW41630.1| cell growth and/or maintenance-related protein, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 488 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 80/206 (38%), Positives = 113/206 (54%), Gaps = 16/206 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +A + L + +A+PTETVYGLA S +P A + +Y+IK RP+ NPLI HVS + M++ Sbjct: 64 LEEASKHLHSHKTVAVPTETVYGLAASSLDPEACKMIYKIKNRPSDNPLIIHVSSLDMLR 123 Query: 72 K----HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + S L L L FWPGPL+L+ S + +T R+P Sbjct: 124 RLLPPDYSFSSLYLALINAFWPGPLSLLFPSPSPP-----PSPAPQTNAIRMPSHPLALA 178 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSS-SICKEIPLIIDGGISKIGLESTIVNVQC 185 LI PL+ PSAN SG+ S T +H+ + + + IIDGG +G+EST+VN Sbjct: 179 LIAHSNLPLSAPSANSSGRPSPTKAQHVWNDLNGSDGLGCIIDGGDCGVGVESTVVNGLE 238 Query: 186 EK-----KVRILRPGGLEIETLKRAI 206 K KV ILRPGGL +E +K+ + Sbjct: 239 WKEGGGGKVDILRPGGLGVEQIKKIV 264 >gi|289550269|ref|YP_003471173.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus lugdunensis HKU09-01] gi|289179801|gb|ADC87046.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus lugdunensis HKU09-01] Length = 344 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 99/333 (29%), Positives = 160/333 (48%), Gaps = 27/333 (8%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L + + G IA+PTETVYGL ++++ A+ ++YE K RP+ NPLI H+ D Sbjct: 17 DYPYLDEIKHVYEQGGLIALPTETVYGLGANAKDQEAVTKIYEAKGRPSDNPLIVHIYDQ 76 Query: 68 SMVKKHAS--VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125 + D + + L FWPGP++ +L L + T L + R+P Sbjct: 77 QQLTPFIETITDKVQI-LMNYFWPGPISFILPLKRGYLCEKV-TGGLDSIAVRMPSHPIG 134 Query: 126 KLIETY-GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + I Y P+A PSAN SG+ S T H+ + +I II+G S+ GLEST+++ Sbjct: 135 RAILKYVDLPIAAPSANTSGKPSPTTFDHVY-HDLNGKIDGIINGDQSEEGLESTVLDCT 193 Query: 185 CEKKVRILRPGGLEIETLKRAI--SVELEYCVDETSTPQSPGMLKSHYAPRSQ---VRLR 239 +I RPG + +++ AI ++ ++ P +PGM HYAP + V+++ Sbjct: 194 T-YPFKIARPGAI-TQSMINAILPDAVVDSNYNDMVRPIAPGMKYKHYAPDTPVTIVKMK 251 Query: 240 AIHV----NPREALIRFGNVPIKNIENAIISLNLSKTGK-LKEAAFNLFNYMKIADDSGA 294 H+ + A F V + I + + + L K + +K A NL+ + D+ Sbjct: 252 GKHIPEIMDKEHAAFIFPEVYRQQIPSESLFIPLCKDDQDIKTANHNLYKILHDLDNMDH 311 Query: 295 SSIAFSSIPNHGLGI-----AINNRLERAAAPR 322 A+ +G I AI NR+ +AAA R Sbjct: 312 VHKAYI----YGFDINDGTQAIMNRMLKAAANR 340 >gi|15925106|ref|NP_372640.1| hypothetical protein SAV2116 [Staphylococcus aureus subsp. aureus Mu50] gi|15927690|ref|NP_375223.1| hypothetical protein SA1918 [Staphylococcus aureus subsp. aureus N315] gi|156980431|ref|YP_001442690.1| hypothetical protein SAHV_2100 [Staphylococcus aureus subsp. aureus Mu3] gi|253315785|ref|ZP_04838998.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006904|ref|ZP_05145505.2| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus Mu50-omega] gi|258407042|ref|ZP_05680192.1| translation factor SUA5 [Staphylococcus aureus A9763] gi|269203752|ref|YP_003283021.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus ED98] gi|296275405|ref|ZP_06857912.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus MR1] gi|13701910|dbj|BAB43202.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus N315] gi|14247889|dbj|BAB58278.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] gi|156722566|dbj|BAF78983.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|257841375|gb|EEV65819.1| translation factor SUA5 [Staphylococcus aureus A9763] gi|262076042|gb|ACY12015.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus ED98] gi|285817780|gb|ADC38267.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus 04-02981] gi|312830468|emb|CBX35310.1| SUA5 domain protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315128787|gb|EFT84787.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus CGS03] gi|329726329|gb|EGG62797.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus 21172] Length = 348 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 72/219 (32%), Positives = 116/219 (52%), Gaps = 7/219 (3%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV-SDISMVKKHASVD 77 L+ GL I +PTETVYGLA ++ + A+ ++YE K RP+ NPLI H+ S + + ++D Sbjct: 29 LNGGL-IGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKVQLKDFTYTLD 87 Query: 78 PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLA 136 P L + FWPGP++ +L L +S L + R+P ++L++ PLA Sbjct: 88 PRVEKLMQAFWPGPISFILPLKPGYLCRKVS-GGLSSVAVRMPSHSVGRQLLQIINEPLA 146 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SG+ S T H+ + I I+ S+ GLEST+++ +I RPG Sbjct: 147 APSANLSGRPSPTTFNHVY-QDLNARIDGIVQAEQSEEGLESTVLDC-TSFPYKIARPGS 204 Query: 197 LEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRS 234 + + + + + ++T P +PGM HY+P + Sbjct: 205 ITAAMITEILPNSIAHADYNDTEQPIAPGMKYKHYSPNT 243 >gi|315660271|ref|ZP_07913126.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus lugdunensis M23590] gi|315494698|gb|EFU83038.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus lugdunensis M23590] Length = 344 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 99/333 (29%), Positives = 160/333 (48%), Gaps = 27/333 (8%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L + + G IA+PTETVYGL ++++ A+ ++YE K RP+ NPLI H+ D Sbjct: 17 DYPYLDEIKHVYEQGGLIALPTETVYGLGANAKDQEAVTKIYEAKGRPSDNPLIVHIYDQ 76 Query: 68 SMVKKHAS--VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125 + D + + L FWPGP++ +L L + T L + R+P Sbjct: 77 QQLTPFIETITDKVQI-LMNYFWPGPISFILPLKRGYLCEKV-TGGLDSIAVRMPSHPIG 134 Query: 126 KLIETY-GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + I Y P+A PSAN SG+ S T H+ + +I II+G S+ GLEST+++ Sbjct: 135 RAILKYVDLPIAAPSANTSGKPSPTTFDHVY-HDLNGKIDGIINGDQSEEGLESTVLDCT 193 Query: 185 CEKKVRILRPGGLEIETLKRAI--SVELEYCVDETSTPQSPGMLKSHYAPRSQ---VRLR 239 +I RPG + +++ AI ++ ++ P +PGM HYAP + V+++ Sbjct: 194 T-YPFKIARPGAI-TQSMINAILPDAVVDSNYNDMVRPIAPGMKYKHYAPDTPVTIVKMK 251 Query: 240 AIHV----NPREALIRFGNVPIKNIENAIISLNLSKTGK-LKEAAFNLFNYMKIADDSGA 294 H+ + A F V + I + + + L K + +K A NL+ + D+ Sbjct: 252 GKHIPEIMDKEHAAFIFPEVYRQQIPSESLFIPLCKDDQDIKTANHNLYKILHDLDNMDH 311 Query: 295 SSIAFSSIPNHGLGI-----AINNRLERAAAPR 322 A+ +G I AI NR+ +AAA R Sbjct: 312 VHKAYI----YGFDINDDTQAIMNRMLKAAANR 340 >gi|295428703|ref|ZP_06821329.1| translation factor [Staphylococcus aureus subsp. aureus EMRSA16] gi|295127373|gb|EFG57013.1| translation factor [Staphylococcus aureus subsp. aureus EMRSA16] Length = 365 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 72/219 (32%), Positives = 115/219 (52%), Gaps = 7/219 (3%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVD 77 L+ GL I +PTETVYGLA ++ + A+ ++YE K RP+ NPLI H+ +K ++D Sbjct: 46 LNGGL-IGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKGQLKDFTYTLD 104 Query: 78 PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLA 136 P L + FWPGP++ +L L +S L + R+P ++L++ PLA Sbjct: 105 PRVEKLMQAFWPGPISFILPLKPGYLCRKVS-GGLSSVAVRMPSHSVGRQLLQIINEPLA 163 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SG+ S T H+ + I I+ S+ GLEST+++ +I RPG Sbjct: 164 APSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDC-TSFPYKIARPGS 221 Query: 197 LEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRS 234 + + + + + ++T P +PGM HY+P + Sbjct: 222 ITAAMITEILPNSIAHADYNDTEQPIAPGMKYKHYSPNT 260 >gi|323439335|gb|EGA97059.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus O11] gi|323442456|gb|EGB00085.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus O46] Length = 357 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 72/219 (32%), Positives = 116/219 (52%), Gaps = 7/219 (3%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV-SDISMVKKHASVD 77 L+ GL I +PTETVYGLA ++ + A+ ++YE K RP+ NPLI H+ S + + ++D Sbjct: 38 LNGGL-IGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKVQLKDFTYTLD 96 Query: 78 PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLA 136 P L + FWPGP++ +L L +S L + R+P ++L++ PLA Sbjct: 97 PRVEKLMQAFWPGPISFILPLKPGYLCRKVS-GGLSSVAVRMPSHSVGRQLLQIINEPLA 155 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SG+ S T H+ + I I+ S+ GLEST+++ +I RPG Sbjct: 156 APSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAKQSEEGLESTVLDC-TSFPYKIARPGS 213 Query: 197 LEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRS 234 + + + + + ++T P +PGM HY+P + Sbjct: 214 ITAAMITEILPNSIAHADYNDTEQPIAPGMKYKHYSPNT 252 >gi|302333762|gb|ADL23955.1| yrdC/SUA5 multi-domain translation factor protein [Staphylococcus aureus subsp. aureus JKD6159] Length = 348 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 72/219 (32%), Positives = 115/219 (52%), Gaps = 7/219 (3%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVD 77 L+ GL I +PTETVYGLA ++ + A+ ++YE K RP+ NPLI H+ +K ++D Sbjct: 29 LNGGL-IGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKGQLKDFTYTLD 87 Query: 78 PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLA 136 P L + FWPGP++ +L L +S L + R+P ++L++ PLA Sbjct: 88 PRVEKLMQAFWPGPISFILPLKPGYLCRKVS-GGLSSVAVRMPSHSVGRQLLQIINEPLA 146 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SG+ S T H+ + I I+ S+ GLEST+++ +I RPG Sbjct: 147 APSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDC-TSFPYKIARPGS 204 Query: 197 LEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRS 234 + + + + + ++T P +PGM HY+P + Sbjct: 205 ITAAMITDILPNSIAHADYNDTEQPIAPGMKYKHYSPNT 243 >gi|148268567|ref|YP_001247510.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus JH9] gi|150394631|ref|YP_001317306.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus JH1] gi|257793874|ref|ZP_05642853.1| translation factor SUA5 [Staphylococcus aureus A9781] gi|258422064|ref|ZP_05684981.1| translation factor SUA5 [Staphylococcus aureus A9719] gi|258433567|ref|ZP_05688640.1| translation factor [Staphylococcus aureus A9299] gi|258440462|ref|ZP_05690632.1| translation factor [Staphylococcus aureus A8115] gi|258445670|ref|ZP_05693848.1| translation factor SUA5 [Staphylococcus aureus A6300] gi|258450124|ref|ZP_05698219.1| translation factor SUA5 [Staphylococcus aureus A6224] gi|258453421|ref|ZP_05701403.1| translation factor SUA5 [Staphylococcus aureus A5937] gi|282894760|ref|ZP_06302986.1| translation factor [Staphylococcus aureus A8117] gi|282929040|ref|ZP_06336625.1| translation factor [Staphylococcus aureus A10102] gi|295407046|ref|ZP_06816848.1| translation factor [Staphylococcus aureus A8819] gi|297246045|ref|ZP_06929902.1| translation factor [Staphylococcus aureus A8796] gi|147741636|gb|ABQ49934.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus JH9] gi|149947083|gb|ABR53019.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus JH1] gi|257787846|gb|EEV26186.1| translation factor SUA5 [Staphylococcus aureus A9781] gi|257841964|gb|EEV66396.1| translation factor SUA5 [Staphylococcus aureus A9719] gi|257849298|gb|EEV73277.1| translation factor [Staphylococcus aureus A9299] gi|257852531|gb|EEV76449.1| translation factor [Staphylococcus aureus A8115] gi|257855509|gb|EEV78446.1| translation factor SUA5 [Staphylococcus aureus A6300] gi|257856598|gb|EEV79504.1| translation factor SUA5 [Staphylococcus aureus A6224] gi|257864402|gb|EEV87148.1| translation factor SUA5 [Staphylococcus aureus A5937] gi|282589346|gb|EFB94438.1| translation factor [Staphylococcus aureus A10102] gi|282762848|gb|EFC02982.1| translation factor [Staphylococcus aureus A8117] gi|294968071|gb|EFG44098.1| translation factor [Staphylococcus aureus A8819] gi|297177044|gb|EFH36299.1| translation factor [Staphylococcus aureus A8796] Length = 357 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 72/219 (32%), Positives = 116/219 (52%), Gaps = 7/219 (3%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV-SDISMVKKHASVD 77 L+ GL I +PTETVYGLA ++ + A+ ++YE K RP+ NPLI H+ S + + ++D Sbjct: 38 LNGGL-IGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKVQLKDFTYTLD 96 Query: 78 PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLA 136 P L + FWPGP++ +L L +S L + R+P ++L++ PLA Sbjct: 97 PRVEKLMQAFWPGPISFILPLKPGYLCRKVS-GGLSSVAVRMPSHSVGRQLLQIINEPLA 155 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SG+ S T H+ + I I+ S+ GLEST+++ +I RPG Sbjct: 156 APSANLSGRPSPTTFNHVY-QDLNARIDGIVQAEQSEEGLESTVLDC-TSFPYKIARPGS 213 Query: 197 LEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRS 234 + + + + + ++T P +PGM HY+P + Sbjct: 214 ITAAMITEILPNSIAHADYNDTEQPIAPGMKYKHYSPNT 252 >gi|319893067|ref|YP_004149942.1| YrdC/Sua5 family protein [Staphylococcus pseudintermedius HKU10-03] gi|317162763|gb|ADV06306.1| YrdC/Sua5 family protein [Staphylococcus pseudintermedius HKU10-03] gi|323463878|gb|ADX76031.1| translation factor, putative [Staphylococcus pseudintermedius ED99] Length = 350 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 78/223 (34%), Positives = 116/223 (52%), Gaps = 9/223 (4%) Query: 20 DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDP 78 D GL + +PTETVYGL ++++ TAIR++YE K RP+ NPLI H+ D + A + Sbjct: 31 DGGL-VVLPTETVYGLGGNAKDDTAIRKIYEAKGRPSDNPLIVHIHDTDQLDDFVADISE 89 Query: 79 LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAI 137 + L + FWPGP+T +L L + T L + R+P L++ P+A Sbjct: 90 STRKLMEAFWPGPITFILPLKQGF-LCDRVTGGLNSVAVRMPSHPVALALLKAVDLPIAA 148 Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197 PSAN SG+ S T +H + + I+ S GLEST+V+ RI RPG + Sbjct: 149 PSANLSGRPSPTTFEHAF-HDLNHRVEGIMRSTQSDAGLESTVVDC-TSFPFRIARPGTI 206 Query: 198 EIETLKRAI--SVELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238 L + SVE+ + T P +PGM HYAP + +++ Sbjct: 207 TRNMLNDILPQSVEVHSPL-ATEKPIAPGMKYRHYAPSTPLKM 248 >gi|87162029|ref|YP_494716.1| hypothetical protein SAUSA300_2070 [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|151222232|ref|YP_001333054.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus str. Newman] gi|221141635|ref|ZP_03566128.1| hypothetical protein SauraJ_08375 [Staphylococcus aureus subsp. aureus str. JKD6009] gi|262049283|ref|ZP_06022158.1| hypothetical protein SAD30_0494 [Staphylococcus aureus D30] gi|262052618|ref|ZP_06024812.1| hypothetical protein SA930_2015 [Staphylococcus aureus 930918-3] gi|87128003|gb|ABD22517.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|150375032|dbj|BAF68292.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus str. Newman] gi|259159488|gb|EEW44538.1| hypothetical protein SA930_2015 [Staphylococcus aureus 930918-3] gi|259162648|gb|EEW47215.1| hypothetical protein SAD30_0494 [Staphylococcus aureus D30] gi|269941715|emb|CBI50122.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus TW20] gi|315196950|gb|EFU27292.1| hypothetical protein CGSSa01_03341 [Staphylococcus aureus subsp. aureus CGS01] gi|329314801|gb|AEB89214.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus T0131] gi|329724053|gb|EGG60577.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus 21189] Length = 348 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 72/219 (32%), Positives = 115/219 (52%), Gaps = 7/219 (3%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVD 77 L+ GL I +PTETVYGLA ++ + A+ ++YE K RP+ NPLI H+ +K ++D Sbjct: 29 LNGGL-IGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKGQLKDFTYTLD 87 Query: 78 PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLA 136 P L + FWPGP++ +L L +S L + R+P ++L++ PLA Sbjct: 88 PRVEKLMQAFWPGPISFILPLKLGYLCRKVS-GGLSSVAVRMPSHSVGRQLLQIINEPLA 146 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SG+ S T H+ + I I+ S+ GLEST+++ +I RPG Sbjct: 147 APSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDC-TSFPYKIARPGS 204 Query: 197 LEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRS 234 + + + + + ++T P +PGM HY+P + Sbjct: 205 ITAAMITEILPNSIAHADYNDTEQPIAPGMKYKHYSPNT 243 >gi|33592619|ref|NP_880263.1| hypothetical protein BP1528 [Bordetella pertussis Tohama I] gi|33572265|emb|CAE41817.1| conserved hypothetical protein [Bordetella pertussis Tohama I] gi|332382036|gb|AEE66883.1| hypothetical protein BPTD_1510 [Bordetella pertussis CS] Length = 350 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 99/322 (30%), Positives = 153/322 (47%), Gaps = 27/322 (8%) Query: 21 AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80 AG A PTETVYGL D+ NP A+ R+Y K RP+ +P+I H++ V AS P + Sbjct: 22 AGELAAFPTETVYGLGADAENPQAVARIYAAKGRPSNHPVIVHIAPEGDVDYWASDVPAA 81 Query: 81 L-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY--GHP-- 134 L + FWPGPLTL+L I + + R P + L+ + G P Sbjct: 82 ARQLIQAFWPGPLTLILK--RAPHIGAAVSGGQDSIGIRCPSHPVAQALLRAFAAGKPNG 139 Query: 135 ---LAIPSANRSGQISITNVKHI---LSSSICKEIPLIIDGGISKIGLESTIVNV-QCEK 187 +A PSAN G +S T +H+ + +P ++DGG +++G+ESTI+++ + ++ Sbjct: 140 QGGVAAPSANTFGHVSPTRAEHVRAEFPREVAAGMP-VLDGGDAEVGIESTIIDLSRLDQ 198 Query: 188 KVR--ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245 V +LRPG I + A + + + + P++ G LK+HYAPR+ + L P Sbjct: 199 GVGPVLLRPG--HISAAQVAAVLGMPVARPDAAAPRASGTLKAHYAPRTPLELLDAAQLP 256 Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEA-------AFNLFNYMKIADDSGASSIA 298 R V + A LS + A A L+ ++ D G + I Sbjct: 257 RALAAAPAGVRQAVVALAPAPAGLSADVHWRMAPAGPARYAQALYALLRELDRQGYARIL 316 Query: 299 FSSIPNHGLGIAINNRLERAAA 320 P G A+N+R+ RAAA Sbjct: 317 VEQPPRSGDWDAVNDRIGRAAA 338 >gi|258453174|ref|ZP_05701165.1| translation factor SUA5 [Staphylococcus aureus A5948] gi|282923104|ref|ZP_06330789.1| translation factor [Staphylococcus aureus A9765] gi|294850086|ref|ZP_06790823.1| translation factor [Staphylococcus aureus A9754] gi|304379297|ref|ZP_07362036.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|257859120|gb|EEV81977.1| translation factor SUA5 [Staphylococcus aureus A5948] gi|282593295|gb|EFB98292.1| translation factor [Staphylococcus aureus A9765] gi|294823034|gb|EFG39466.1| translation factor [Staphylococcus aureus A9754] gi|302751997|gb|ADL66174.1| yrdC/SUA5 multi-domain translation factor protein [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304342156|gb|EFM08056.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|320140712|gb|EFW32564.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320143688|gb|EFW35465.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus MRSA177] Length = 357 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 72/219 (32%), Positives = 115/219 (52%), Gaps = 7/219 (3%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVD 77 L+ GL I +PTETVYGLA ++ + A+ ++YE K RP+ NPLI H+ +K ++D Sbjct: 38 LNGGL-IGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKGQLKDFTYTLD 96 Query: 78 PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLA 136 P L + FWPGP++ +L L +S L + R+P ++L++ PLA Sbjct: 97 PRVEKLMQAFWPGPISFILPLKLGYLCRKVS-GGLSSVAVRMPSHSVGRQLLQIINEPLA 155 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SG+ S T H+ + I I+ S+ GLEST+++ +I RPG Sbjct: 156 APSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDC-TSFPYKIARPGS 213 Query: 197 LEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRS 234 + + + + + ++T P +PGM HY+P + Sbjct: 214 ITAAMITEILPNSIAHADYNDTEQPIAPGMKYKHYSPNT 252 >gi|57652138|ref|YP_186923.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus COL] gi|57286324|gb|AAW38418.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus COL] Length = 351 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 72/219 (32%), Positives = 115/219 (52%), Gaps = 7/219 (3%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVD 77 L+ GL I +PTETVYGLA ++ + A+ ++YE K RP+ NPLI H+ +K ++D Sbjct: 32 LNGGL-IGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKGQLKDFTYTLD 90 Query: 78 PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLA 136 P L + FWPGP++ +L L +S L + R+P ++L++ PLA Sbjct: 91 PRVEKLMQAFWPGPISFILPLKLGYLCRKVS-GGLSSVAVRMPSHSVGRQLLQIINEPLA 149 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SG+ S T H+ + I I+ S+ GLEST+++ +I RPG Sbjct: 150 APSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDC-TSFPYKIARPGS 207 Query: 197 LEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRS 234 + + + + + ++T P +PGM HY+P + Sbjct: 208 ITAAMITEILPNSIAHADYNDTEQPIAPGMKYKHYSPNT 246 >gi|88196020|ref|YP_500833.1| hypothetical protein SAOUHSC_02357 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|87203578|gb|ABD31388.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] Length = 365 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 72/219 (32%), Positives = 115/219 (52%), Gaps = 7/219 (3%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVD 77 L+ GL I +PTETVYGLA ++ + A+ ++YE K RP+ NPLI H+ +K ++D Sbjct: 46 LNGGL-IGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKGQLKDFTYTLD 104 Query: 78 PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLA 136 P L + FWPGP++ +L L +S L + R+P ++L++ PLA Sbjct: 105 PRVEKLMQAFWPGPISFILPLKLGYLCRKVS-GGLSSVAVRMPSHSVGRQLLQIINEPLA 163 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SG+ S T H+ + I I+ S+ GLEST+++ +I RPG Sbjct: 164 APSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDC-TSFPYKIARPGS 221 Query: 197 LEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRS 234 + + + + + ++T P +PGM HY+P + Sbjct: 222 ITAAMITEILPNSIAHADYNDTEQPIAPGMKYKHYSPNT 260 >gi|284025150|ref|ZP_06379548.1| hypothetical protein Saura13_11208 [Staphylococcus aureus subsp. aureus 132] Length = 348 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 72/219 (32%), Positives = 114/219 (52%), Gaps = 7/219 (3%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVD 77 L+ GL I +PTETVYGLA ++ + A+ ++YE K RP+ NPLI H+ +K + D Sbjct: 29 LNGGL-IGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKGQLKDFTYTFD 87 Query: 78 PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLA 136 P L + FWPGP++ +L L +S L + R+P ++L++ PLA Sbjct: 88 PRVEKLMQAFWPGPISFILPLKLGYLCRKVS-GGLSSVAVRMPSHSVGRQLLQIINEPLA 146 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SG+ S T H+ + I I+ S+ GLEST+++ +I RPG Sbjct: 147 APSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDC-TSFPYKIARPGS 204 Query: 197 LEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRS 234 + + + + + ++T P +PGM HY+P + Sbjct: 205 ITAAMITEILPNSIAHADYNDTEQPIAPGMKYKHYSPNT 243 >gi|326319262|ref|YP_004236934.1| Sua5/YciO/YrdC/YwlC family protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323376098|gb|ADX48367.1| Sua5/YciO/YrdC/YwlC family protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 336 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 103/339 (30%), Positives = 167/339 (49%), Gaps = 40/339 (11%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +++ A L AG + +PTETVYGLA D+ + A+ +++E K RP+ +PLI HV+ Sbjct: 9 SSIDAAARALRAGQLLGLPTETVYGLAADAASDAAVAQIFEAKGRPSDHPLIVHVAGSEG 68 Query: 70 VKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLST---------------TDIHPLSTANLK 113 + AS+ + L + FWPGPLTL+L L HP++ A LK Sbjct: 69 IPHFAASIPAFAEALVRAFWPGPLTLILPRLPDRAAAAAGGQDSVGLRCPAHPVAQAVLK 128 Query: 114 TACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173 P + + H +A PSANR G++S T +H+ + L++DGG Sbjct: 129 ACASDDPALGGQPV-----HGVAAPSANRFGRVSPTTAQHVQGE--FGDGLLVLDGGPCT 181 Query: 174 IGLESTIVNVQCEKKVRI-LRPGGLEIETLKRAIS-VELEYCVDETSTPQSPGMLKSHYA 231 +G+ESTI++ C + V + LRPG + + A V L + TP++ G L++HYA Sbjct: 182 VGIESTIID--CTRGVPVLLRPGAITRAEIAAACGLVPLSKEELPSHTPRASGTLEAHYA 239 Query: 232 PRSQVR------LRA----IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFN 281 P ++VR LRA + + R L + P+++ + ++ + + AA Sbjct: 240 PSAKVRLMDAKALRAGLELLGADARH-LAVYARAPLRSPSSGVVLRRMPEA--AAAAAQE 296 Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 LF ++ DD+G I + P + +RL+RAAA Sbjct: 297 LFAALRDFDDAGVKLIWVETPPETPDWEGVRDRLQRAAA 335 >gi|298695390|gb|ADI98612.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp. aureus ED133] Length = 348 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 72/219 (32%), Positives = 116/219 (52%), Gaps = 7/219 (3%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV-SDISMVKKHASVD 77 L+ GL I +PTETVYGLA ++ + A+ ++YE K RP+ NPLI H+ S + + ++D Sbjct: 29 LNGGL-IGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKVQLKDFTYTLD 87 Query: 78 PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLA 136 P L + FWPGP++ +L L +S L + R+P ++L++ PLA Sbjct: 88 PRVEKLMQAFWPGPISFILPLKPGYLCRKVS-GGLSSVAVRMPSHSVGRQLLQIINEPLA 146 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SG+ S T H+ + I I+ S+ GLEST+++ +I RPG Sbjct: 147 APSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDC-TSFPYKIARPGS 204 Query: 197 LEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRS 234 + + + + + ++T P +PGM HY+P + Sbjct: 205 ITAAMITDILPNSIAHADYNDTEQPIAPGMKYKHYSPNT 243 >gi|258422884|ref|ZP_05685784.1| translation factor SUA5 [Staphylococcus aureus A9635] gi|257846908|gb|EEV70922.1| translation factor SUA5 [Staphylococcus aureus A9635] Length = 357 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 77/228 (33%), Positives = 121/228 (53%), Gaps = 13/228 (5%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVD 77 L+ GL I +PTETVYGLA ++ + A+ ++YE K RP+ NPLI H+ +K ++D Sbjct: 38 LNGGL-IGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKGQLKDFTYTLD 96 Query: 78 PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLA 136 P L + FWPGP++ +L L +S L + R+P ++L++ PLA Sbjct: 97 PRVEKLMQAFWPGPISFILPLKPGYLCRKVS-GGLSSVAVRMPSHSVGRQLLQIINEPLA 155 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SG+ S T H+ + I I+ S+ GLEST+++ +I RPG Sbjct: 156 APSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDC-TSFPYKIARPGS 213 Query: 197 LE----IETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 + + L +I V +Y ++T P +PGM HY+P + + + A Sbjct: 214 ITAAMITDILPNSI-VHADY--NDTEQPIAPGMKYKHYSPNTPLTIIA 258 >gi|209881512|ref|XP_002142194.1| hypothetical protein [Cryptosporidium muris RN66] gi|209557800|gb|EEA07845.1| hypothetical protein, conserved [Cryptosporidium muris RN66] Length = 393 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 87/262 (33%), Positives = 128/262 (48%), Gaps = 33/262 (12%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+I I D + + ++L G +AIPTETVYGL ++ N +I +Y+IK RP NPL Sbjct: 1 MKISDIGDDICVEEYVKYLLDGDLVAIPTETVYGLGGNAFNQKSILDIYKIKGRPKNNPL 60 Query: 61 ICHV-----SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115 ICHV +++ + + V+ + LA FWPGPL+L+ ++I + K A Sbjct: 61 ICHVYSFEQAELQVFELTHKVNVVYKQLAFKFWPGPLSLIGK--KKSEIIEDVALSGKVA 118 Query: 116 CFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSS-------SICKEIPLII 167 R P G T K I+ P+A PSANRSG IS TN +HI+ I I ++ Sbjct: 119 V-RCPNNGLTLKFIKMANVPIAAPSANRSGHISPTNPQHIIKEFTEQYMREIGVNIWILY 177 Query: 168 DGGISKIGLESTIVN-VQCEKKVRILRPGGLE--------------IETLKRAISVELEY 212 D IG+EST++ V+ ++ I RPG + I++ + + Y Sbjct: 178 DRDCCNIGVESTVIEYVEDTNEIIIYRPGAISKCDILNCLTKDNQFIKSQSWIKDINIRY 237 Query: 213 CVDETSTPQ--SPGMLKSHYAP 232 E SPGM HY+P Sbjct: 238 FSRENRDLDLPSPGMDIKHYSP 259 >gi|237748715|ref|ZP_04579195.1| translation factor SUA5 [Oxalobacter formigenes OXCC13] gi|229380077|gb|EEO30168.1| translation factor SUA5 [Oxalobacter formigenes OXCC13] Length = 342 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 98/333 (29%), Positives = 159/333 (47%), Gaps = 31/333 (9%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S+ +R A L++G +A PTETVYGL D+ N A ++ +K RPA +PLI HV+ + Sbjct: 6 SDDVRAAARMLESGQLVAFPTETVYGLGADAENAVATAAIFALKNRPANHPLIVHVAPDA 65 Query: 69 MVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + +S P + L FWPGPLTL+L I + R P + Sbjct: 66 DIGYWSSYIPDEAKKLIDAFWPGPLTLILK--KAAHIPAAVAGGQDSIGLRCPSHPVAQA 123 Query: 127 LIETYGHP---LAIPSANRSGQISITNVKHILSS-SICKEIPLIIDGGISKIGLESTIVN 182 L+ + +A PSANR G +S T +H+ + I++GG S++G+ESTI++ Sbjct: 124 LLRAFKGGKGGIAGPSANRFGHVSPTRAEHVREEFGDDPRLAAILEGGQSEVGIESTILD 183 Query: 183 ---VQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 ++ V +LRPG +I +L+ A + + + + P++ G L SHYAP + V Sbjct: 184 LSRIETAGPV-LLRPG--KIHSLQIAEVIGRMPEMPDAAAPRASGTLASHYAPLTPV--- 237 Query: 240 AIHVNPREALIRFGNVPIKNIENAIISL-NLSKTGK---LKEAAF---------NLFNYM 286 + V ++ + KNI A++ +LS K +K+ L+ + Sbjct: 238 -VIVPEKDLTSVLKQLEKKNIRVALLHYSSLSSDRKQPLVKQTGLFCSPDVYSHQLYASL 296 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 + D A I + P+ +N+RL RAA Sbjct: 297 RELDRHRADVILVEATPDTEAWKGVNDRLRRAA 329 >gi|94309452|ref|YP_582662.1| translation factor SUA5 [Cupriavidus metallidurans CH34] gi|93353304|gb|ABF07393.1| putative translation factor (SUA5) [Cupriavidus metallidurans CH34] Length = 330 Score = 108 bits (271), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 90/329 (27%), Positives = 144/329 (43%), Gaps = 34/329 (10%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +A L+AG +A PTETVYGL D+ NP A+ R++ K RP+ +P+I HV D + V Sbjct: 11 LDEAVRLLEAGELVAFPTETVYGLGADAENPEAVARIFAAKGRPSNHPVIVHVVDGADVG 70 Query: 72 KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTAN------LKTACFRVPCGFT 124 + P + L FWPGPLT++L + P + A L+ V Sbjct: 71 YWSDDVPEAAQKLIDAFWPGPLTIILKRAAHI---PAAVAGGQDSIGLRCPSHPVAQALL 127 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHI---LSSSICKEIPLIIDGGISKIGLESTIV 181 + G +A PSAN+ GQ+S T +H+ S+ +++G +G+ES+IV Sbjct: 128 SRFRRGRGG-IAAPSANKFGQVSPTTAEHVRDEFGGSV-----YVLEGDGVDVGIESSIV 181 Query: 182 NVQCEKKVR--ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 ++ +LRPG + + + + + P++ G LK+HYAPR+ + L Sbjct: 182 DLSRLDTAGPVLLRPGAITAAMMADVLGTMP--LPPDAAAPRASGTLKAHYAPRTTLTLA 239 Query: 240 AIHVNPR--------EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291 P+ L G P + + A L+ ++ D Sbjct: 240 QADALPQYLHGLSADGRLAWVGRAPATSDPRCTF---VEAPATPDAYAQELYRLLRRLDK 296 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320 G + F +P + +RL RAAA Sbjct: 297 EGFQRLVFEPLPESLEWDGVRDRLGRAAA 325 >gi|291001607|ref|XP_002683370.1| predicted protein [Naegleria gruberi] gi|284096999|gb|EFC50626.1| predicted protein [Naegleria gruberi] Length = 380 Score = 108 bits (271), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 87/274 (31%), Positives = 133/274 (48%), Gaps = 59/274 (21%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 + E L G ++ PTETVYGL ++ + A+ +++ KKRP +P+I HV D+ KK Sbjct: 1 EECSEHLRNGGLVSFPTETVYGLGANALDEKAVYSIFKAKKRPLTDPVIVHVLDVDQAKK 60 Query: 73 HASVDPLSL------HLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCG-FT 124 + +++ SL HLA FWPGPLTLV S + P TA+ RVP Sbjct: 61 YITIEENSLHMRLYEHLAATFWPGPLTLVSK--SNEQVIPDCVTASTGFVGIRVPAHPII 118 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILS-------SSICKEIPLII------DGGI 171 +KL+E P++ PSANR G IS T H++ I E I + Sbjct: 119 RKLLEHCKLPISAPSANRFGHISPTRASHVMEDLGLYGKDEIDNENVFRILVLEEENNSE 178 Query: 172 SK----IGLESTIVNV-QCEK---KVRILRPGGLEIETLKRAISVELEYCVDETST---- 219 SK +G+EST+ + + E K+ +LR GG+ +E LK+++ E+ ++E++T Sbjct: 179 SKTECSVGIESTVAKISELEDKSLKIEVLRRGGISLEQLKKSVQ---EFILEESNTRGTI 235 Query: 220 PQ---------------------SPGMLKSHYAP 232 P+ +PG L +HYAP Sbjct: 236 PEVKVEARHQTYSVKMNDNTAQIAPGQLITHYAP 269 >gi|33600403|ref|NP_887963.1| hypothetical protein BB1417 [Bordetella bronchiseptica RB50] gi|33568002|emb|CAE31915.1| conserved hypothetical protein [Bordetella bronchiseptica RB50] Length = 345 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 78/233 (33%), Positives = 123/233 (52%), Gaps = 20/233 (8%) Query: 21 AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80 AG A PTETVYGL D+ NP A+ R+Y K RP+ +P+I H++ V AS P + Sbjct: 17 AGELAAFPTETVYGLGADAENPQAVARIYAAKGRPSNHPVIVHIAPEGDVDYWASDVPAA 76 Query: 81 L-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY--GHP-- 134 L + FWPGPLTL+L I + + R P + L+ + G P Sbjct: 77 ARQLIQAFWPGPLTLILK--RAPHIGAAVSGGQDSIGIRCPSHPVAQALLRAFAAGKPNG 134 Query: 135 ---LAIPSANRSGQISITNVKHI---LSSSICKEIPLIIDGGISKIGLESTIVNV-QCEK 187 +A PSAN G +S T +H+ + +P ++DGG +++G+ESTI+++ + ++ Sbjct: 135 QGGVAAPSANTFGHVSPTRAEHVRAEFPREVAAGMP-VLDGGDAEVGIESTIIDLSRLDQ 193 Query: 188 KVR--ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238 V +LRPG I + A + + + + P++ G LK+HYAPR+ + L Sbjct: 194 GVGPVLLRPG--HISAAQVAAVLGMPVARPDAAAPRASGTLKAHYAPRTPLEL 244 >gi|33595873|ref|NP_883516.1| hypothetical protein BPP1200 [Bordetella parapertussis 12822] gi|33565952|emb|CAE36502.1| conserved hypothetical protein [Bordetella parapertussis] Length = 350 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 78/233 (33%), Positives = 123/233 (52%), Gaps = 20/233 (8%) Query: 21 AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80 AG A PTETVYGL D+ NP A+ R+Y K RP+ +P+I H++ V AS P + Sbjct: 22 AGELAAFPTETVYGLGADAENPQAVARIYAAKGRPSNHPVIVHIAPEGDVDYWASDVPAA 81 Query: 81 L-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY--GHP-- 134 L + FWPGPLTL+L I + + R P + L+ + G P Sbjct: 82 ARQLIQAFWPGPLTLILK--RAPHIGAAVSGGQDSIGIRCPSHPVAQALLRAFAAGKPNG 139 Query: 135 ---LAIPSANRSGQISITNVKHI---LSSSICKEIPLIIDGGISKIGLESTIVNV-QCEK 187 +A PSAN G +S T +H+ + +P ++DGG +++G+ESTI+++ + ++ Sbjct: 140 QGGVAAPSANTFGHVSPTRAEHVRAEFPREVAAGMP-VLDGGDAEVGIESTIIDLSRLDQ 198 Query: 188 KVR--ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238 V +LRPG I + A + + + + P++ G LK+HYAPR+ + L Sbjct: 199 GVGPVLLRPG--HISAAQVAAVLGMPVARPDAAAPRASGTLKAHYAPRTPLEL 249 >gi|283471333|emb|CAQ50544.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus ST398] Length = 348 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 71/219 (32%), Positives = 114/219 (52%), Gaps = 7/219 (3%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVD 77 L+ GL I +PTETVYGLA ++ + A+ ++YE K RP+ NPLI H+ +K ++D Sbjct: 29 LNGGL-IGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKDQLKDFTYTLD 87 Query: 78 PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLA 136 L + FWPGP++ +L L +S L + R+P ++L++ PLA Sbjct: 88 ARVEKLMQAFWPGPISFILPLKPGYLCRKVS-GGLSSVAVRMPSHSVGRQLLQIINEPLA 146 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SG+ S T H+ + I I+ S+ GLEST+++ +I RPG Sbjct: 147 APSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDC-TSFPYKIARPGS 204 Query: 197 LEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRS 234 + + + + + ++T P +PGM HY+P + Sbjct: 205 ITAAMITDILPNSITHADYNDTEQPIAPGMKYKHYSPNT 243 >gi|120613197|ref|YP_972875.1| translation factor SUA5 [Acidovorax citrulli AAC00-1] gi|120591661|gb|ABM35101.1| translation factor SUA5 [Acidovorax citrulli AAC00-1] Length = 336 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 80/229 (34%), Positives = 121/229 (52%), Gaps = 27/229 (11%) Query: 28 PTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLSLHLAKL 86 PTETVYGLA D+ + A+ +++E K RP+ +PLI HV+ + ASV P + L + Sbjct: 27 PTETVYGLAADAASDAAVAQIFEAKGRPSDHPLIVHVAGPEGIPHFAASVPPFAEALVRA 86 Query: 87 FWPGPLTLVLDLLST---------------TDIHPLSTANLKTACFRVPCGFTKKLIETY 131 FWPGPLTL+L L HP++ A LK P + + Sbjct: 87 FWPGPLTLILPRLPDRAAAAAGGQNSVGLRCPAHPVAQAVLKACASDDPALGGQPV---- 142 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 H +A PSANR G++S T +H+ E +++DGG +G+ESTI++ C + V + Sbjct: 143 -HGVAAPSANRFGRVSPTTAQHVQDE--FGEGLVVLDGGPCAVGIESTIID--CTRGVPV 197 Query: 192 -LRPGGLEIETLKRAISVE-LEYCVDETSTPQSPGMLKSHYAPRSQVRL 238 LRPG + + A + L + TP++ G L++HYAP ++VRL Sbjct: 198 LLRPGAITRAEIAAACGLSPLSKEELPSHTPRASGTLEAHYAPSAKVRL 246 >gi|160872705|ref|ZP_02062837.1| Sua5/YciO/YrdC family protein [Rickettsiella grylli] gi|159121504|gb|EDP46842.1| Sua5/YciO/YrdC family protein [Rickettsiella grylli] Length = 307 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 93/311 (29%), Positives = 149/311 (47%), Gaps = 25/311 (8%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL-ICHVSDI 67 +N L A L AG I +PTETVY LA D+ N AI +++ +K+RP PL + + Sbjct: 4 NNELASAVSCLKAGKLIVLPTETVYALAGDATNLNAILQIFSLKRRPLNQPLSVLLAKEH 63 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 M + + ++ LA+ FWPGPLTL+L T + P T RVP + Sbjct: 64 PMTRWARDIPEVAEKLAERFWPGPLTLILKKEKT--VLPELTGGQHKIGLRVPDHPIAQA 121 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 ++ ++ +A PSANRS +S T++KH+ + + + +IDGG +IG+ESTI++V Sbjct: 122 VLSSFARGVAAPSANRSTALSPTHIKHV-RAEFDQPLEWMIDGGPCRIGIESTIIDVTFT 180 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI--HVN 244 RILR G L + + E+E + + P + + P+ QV I H+N Sbjct: 181 IP-RILRLGALPLAKIASITPYEIEKSTSPSCFSKKPLITQ---VPK-QVLDEVIDTHLN 235 Query: 245 PREALIRFGNVPIKNIENAIISLNL----SKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300 + L F P K + + + S+ G+ L++Y+ + I Sbjct: 236 HYQPLTVFAFSPAKKKHKNVTWIQMPSEASRYGQ------QLYHYLH-QSKAMHHRILVE 288 Query: 301 SIP--NHGLGI 309 ++P NH GI Sbjct: 289 AVPKRNHWAGI 299 >gi|323448739|gb|EGB04634.1| hypothetical protein AURANDRAFT_12057 [Aureococcus anophagefferens] Length = 357 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 75/243 (30%), Positives = 119/243 (48%), Gaps = 31/243 (12%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD-------ISMVK 71 L +G A PTETVYGL ++ + A+RR++E+K+RP +PLI HV++ + + Sbjct: 8 LASGGLCAFPTETVYGLGANALDEAAVRRIFEVKRRPLSDPLIVHVAEPEDALGLVDLGG 67 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIET 130 A+ + + L + FWPGPLTLV + + A T R P G + LI Sbjct: 68 ARAAAHKVFVTLTRAFWPGPLTLVCP--ARNHLPACLGAGTGTVGVRCPSHGLARALIGA 125 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS---------KIGLESTIV 181 G P+A PSAN G +S T +H++ E+ ++DG + G+EST+ Sbjct: 126 AGVPVAAPSANLFGHVSPTRAQHVVDDLGASEL-HVLDGSAAGEFGGDPPCAHGIESTVC 184 Query: 182 NVQCEKK------VRILRPGGLEIETLKRAIS----VELEYCVDETSTPQ-SPGMLKSHY 230 + + + R G + L+RA++ EL V + P+ +PG L +HY Sbjct: 185 AIAPAPGRDDAVVLTVYRRGAVAATALERAVADEPDAELRAAVAKLVVPECAPGQLLTHY 244 Query: 231 APR 233 AP+ Sbjct: 245 APK 247 >gi|269925890|ref|YP_003322513.1| Sua5/YciO/YrdC/YwlC family protein [Thermobaculum terrenum ATCC BAA-798] gi|269789550|gb|ACZ41691.1| Sua5/YciO/YrdC/YwlC family protein [Thermobaculum terrenum ATCC BAA-798] Length = 205 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 71/199 (35%), Positives = 114/199 (57%), Gaps = 17/199 (8%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLA--VDSRNPTAIRRLYEIKKRPAMNPLICH 63 I D A+R+A +F G IA PT+TVYG+ VD P A+ ++Y K+RP P+ Sbjct: 7 IEDKEAVRQAIDFALKGELIAFPTDTVYGVGSIVD---PQAVSKIYRAKERPLDKPIPIL 63 Query: 64 VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 +SD S ++K+A +D +++ LA+ FWPG LTLV + + D+ + T FR+P Sbjct: 64 LSDDSYLEKYAKDIDAIAMELARTFWPGALTLV--VRAREDVAEAVGSKDGTVGFRIPDY 121 Query: 122 GFTKKLIETYGHPLAIPSANRSGQ---ISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 +++I G +A+ SAN SG+ ++ +V+H L + +I+DGG +IG S Sbjct: 122 EPAREIIRQCGGAMAVTSANISGERNPLTADDVEHDLGDRVA----IILDGGPCRIGKPS 177 Query: 179 TIVNVQCEKKVRILRPGGL 197 T+V++ EK + I+R G L Sbjct: 178 TVVDLSKEKPL-IVRKGAL 195 >gi|238028508|ref|YP_002912739.1| Sua5/YciO/YrdC/YwlC [Burkholderia glumae BGR1] gi|237877702|gb|ACR30035.1| Sua5/YciO/YrdC/YwlC [Burkholderia glumae BGR1] Length = 359 Score = 105 bits (263), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 77/237 (32%), Positives = 119/237 (50%), Gaps = 20/237 (8%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV---SDISMV 70 +A L AG +A PTETVYGL D+ +P A+ R+Y K RPA +P+I H+ D Sbjct: 29 EAAARLAAGELVAFPTETVYGLGGDAESPQAVARIYAAKGRPANHPVIVHLPPGGDPGYW 88 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 D + L + FWPGPLTL+L I + + R P + L+ Sbjct: 89 VPALPAD--ARRLIEAFWPGPLTLILK--RAAHIPDAVSGGQDSVGLRCPSHPVAQALLA 144 Query: 130 TY-----GH-PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + GH +A PSANR G +S T +H+ + ++DGG +++G+ESTI+++ Sbjct: 145 AFSARRAGHGGVAAPSANRFGHVSPTTAQHVRDE--FGDAVHVLDGGAAEVGIESTILDL 202 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVD--ETSTPQSPGMLKSHYAPRSQVRL 238 +LRPG + + + + L D + P++ G LK+HYAPR+ + L Sbjct: 203 -SRGFPALLRPGHVTPQQIAEVLGT-LPRLPDGGDPGAPRASGTLKAHYAPRTPLVL 257 >gi|219115932|ref|XP_002178761.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|219115936|ref|XP_002178763.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217409528|gb|EEC49459.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217409530|gb|EEC49461.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 357 Score = 105 bits (263), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 86/337 (25%), Positives = 163/337 (48%), Gaps = 40/337 (11%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK--HASVDPL 79 G ++ PTETVYGL + + A R+++ K+RP +PLI HV++ + ++ A+ D L Sbjct: 15 GDLVSFPTETVYGLGCHALDELACRKVFAAKERPLTDPLIVHVNEEAKAQELWQATADSL 74 Query: 80 SLH----LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHP 134 L FWPGPLTLV +T+ + + A R P T + LI + G P Sbjct: 75 EGRILACLIHEFWPGPLTLVAK--ATSSVPSVLMAGTGFVACRSPSHPTARALIASAGVP 132 Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR---- 190 +A PSAN+ G +S T H+ +++ ++ + ++G+ES++ ++ + K R Sbjct: 133 IAAPSANKFGHVSPTCADHVFDDLRYEDVWIVEEDEPLQVGVESSVAKLEMQDKARGVLT 192 Query: 191 ILRPGGLEIETLKRAI------SVELEYCVDETSTPQ----SPGMLKSHYAPR------S 234 +LR G + + L+R + SV++ +++ + +PG HY+P S Sbjct: 193 VLRQGAISVLDLQRCLRKANIDSVQVRANTSRSTSDEEANVAPGQTVRHYSPNIPSFLVS 252 Query: 235 QVRLRAIHVNPREA------LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKI 288 + + + + ++ ++ +G + E +LS +AA +F+ ++ Sbjct: 253 KYCVESYMNDGNQSKLADTVIVDYGETMLSWKEYCAAYRDLSSVADSTKAAQAVFDTLRW 312 Query: 289 ADD-SGASSIAFSSI----PNHGLGIAINNRLERAAA 320 A+ GAS + F + + L +A+ ++L RAA+ Sbjct: 313 AEQVEGASRVLFPDLEVDDESDALILAVKDKLTRAAS 349 >gi|167844511|ref|ZP_02470019.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei B7210] Length = 227 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 70/195 (35%), Positives = 100/195 (51%), Gaps = 13/195 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + A+ A LDAG +A PTETVYGL D++NP A+ R+Y K RPA +P+I H++ S Sbjct: 10 AEAIEDAAARLDAGELVAFPTETVYGLGADAQNPAAVARIYAAKGRPANHPVIVHLAPGS 69 Query: 69 MVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 P L FWPGPLTL+L T I + + R P + Sbjct: 70 DPGYWVEALPADAKKLIDAFWPGPLTLILK--RATHIPDAVSGGQDSVGLRCPSHPVAQA 127 Query: 127 LIETY-----GH-PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L+ + GH +A PSANR G +S T +H+ + ++DGG S +G+ESTI Sbjct: 128 LLRAFDARRGGHGGVAAPSANRFGHVSPTTAQHVRDE--FGDAVHVLDGGPSDVGIESTI 185 Query: 181 VNVQCEKKVRILRPG 195 +++ +LRPG Sbjct: 186 LDL-SRGFPALLRPG 199 >gi|167737355|ref|ZP_02410129.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 14] Length = 228 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 70/195 (35%), Positives = 100/195 (51%), Gaps = 13/195 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + A+ A LDAG +A PTETVYGL D++NP A+ R+Y K RPA +P+I H++ S Sbjct: 10 AEAIEDAAARLDAGELVAFPTETVYGLGADAQNPAAVARIYAAKGRPANHPVIVHLAPGS 69 Query: 69 MVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 P L FWPGPLTL+L T I + + R P + Sbjct: 70 DPGYWVEALPADAKKLIDAFWPGPLTLILK--RATHIPDAVSGGQDSVGLRCPSHPVAQA 127 Query: 127 LIETY-----GH-PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L+ + GH +A PSANR G +S T +H+ + ++DGG S +G+ESTI Sbjct: 128 LLRAFDARRGGHGGVAAPSANRFGHVSPTTAQHVRDE--FGDAVHVLDGGPSDVGIESTI 185 Query: 181 VNVQCEKKVRILRPG 195 +++ +LRPG Sbjct: 186 LDL-SRGFPALLRPG 199 >gi|153004279|ref|YP_001378604.1| Sua5/YciO/YrdC/YwlC family protein [Anaeromyxobacter sp. Fw109-5] gi|152027852|gb|ABS25620.1| Sua5/YciO/YrdC/YwlC family protein [Anaeromyxobacter sp. Fw109-5] Length = 205 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 70/182 (38%), Positives = 95/182 (52%), Gaps = 5/182 (2%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 +A PTET YGL +R+P A+ RL K RP PL +D V++ A +D L+ LA Sbjct: 24 VAYPTETFYGLGALARDPAALERLARAKLRPEGKPLPLLAADADQVREVARLDGLASRLA 83 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRS 143 + FWPGPLTLVL L D TA +T RVP + L G + SAN S Sbjct: 84 ERFWPGPLTLVLPALPGLDAA--VTAGSRTVAVRVPGSELARALARQAGGAIVSTSANLS 141 Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203 G ++ LS S+ I ++DGG + G STIV V E +VR++R G + E ++ Sbjct: 142 GDPPPSSAAQ-LSPSLVARIDHVLDGGSTPGGRPSTIVEVVGE-RVRLVRDGVIPFEEVQ 199 Query: 204 RA 205 A Sbjct: 200 AA 201 >gi|66828913|ref|XP_647810.1| hypothetical protein DDB_G0278955 [Dictyostelium discoideum AX4] gi|60470098|gb|EAL68079.1| hypothetical protein DDB_G0278955 [Dictyostelium discoideum AX4] Length = 403 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 102/390 (26%), Positives = 174/390 (44%), Gaps = 77/390 (19%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +I++ T N + + + GL +A PTETVYGL ++ + A+ +++ K RP +P+I Sbjct: 9 KIVNPTLENLIEAGNKIKNGGL-VAFPTETVYGLGANALDKDAVLSIFKAKGRPLTDPVI 67 Query: 62 CHVSD----ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 H+ + + ++K + L+ FWPGPLT+V S+ I + TA Sbjct: 68 VHIIESEYALKLLKLTEKQKEIFQVLSDNFWPGPLTIVAK--SSELIPMIVTAETGYVGV 125 Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS---- 172 R P ++LI+ G P+A PSANR G +S T H+L + P+ I I+ Sbjct: 126 RFPNHPLAQQLIKHSGKPIAAPSANRFGHVSPTTANHVLDD--LADSPITILNSINNNSS 183 Query: 173 --------------------KIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEY 212 KIG+EST++ + + ++ ILR GG+ ++LK I+ + + Sbjct: 184 CDNKDIDDNNNNTKEEEEACKIGIESTVLKIVSDSELVILRRGGVSEKSLKCVINNKFKD 243 Query: 213 CVD--------ETSTPQ---SPGMLKSHYAPRSQVRLRAIHVNPRE-------------- 247 + E +T Q +PG L +HYAP Q + +N Sbjct: 244 TIQITSINKTVENTTSQGQEAPGQLLTHYAPDIQTFILDNILNSENDNNNNNNKNNDNSL 303 Query: 248 -----ALIRFGNVPIKNIENAIISL-NLSKTGKLKEAAFNLFNYMKIADDSGASSIA--- 298 I FGN +N ++ +LS+ + EAA LF ++ +++ + I Sbjct: 304 DLKECVYIDFGNQLPNEFKNQCLAYRDLSENKNILEAANQLFAVLRWSENQEGAKIILLP 363 Query: 299 ------FSSIPNHGLGIAINNRLERAAAPR 322 F S+ N A+ +R+ RAA+ + Sbjct: 364 DLRKEPFKSLDNSE---AVFDRIFRAASGK 390 >gi|114567901|ref|YP_755055.1| hypothetical protein Swol_2395 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338836|gb|ABI69684.1| translation factor SUA5 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 318 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 67/199 (33%), Positives = 109/199 (54%), Gaps = 7/199 (3%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 +A + A +A PTETVYGL + A+ +++ K R NPL+ H+S + V+ Sbjct: 2 QAASLIKAQELVAFPTETVYGLGAAAFQSQAVEKIFLAKGRAETNPLLLHLSCMEQVESV 61 Query: 74 A-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY 131 A + P ++ L + FWPGPL+++L T + + T R+P LI+ Sbjct: 62 AKEIPPAAIMLMERFWPGPLSIILPARET--VPAIVRGGKTTVGLRMPAHPVALALIDQA 119 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 G PLA PSAN SG+ S +H+ + + +I I+D G + +GLESTI+++ RI Sbjct: 120 G-PLAAPSANLSGRPSPVTAEHV-KADLDGKIAAILDAGPTGLGLESTIIDL-SNPGYRI 176 Query: 192 LRPGGLEIETLKRAISVEL 210 LR GG+ +E L++A+ + + Sbjct: 177 LRQGGITVEELEKAMGMSI 195 >gi|167835602|ref|ZP_02462485.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia thailandensis MSMB43] Length = 231 Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 72/200 (36%), Positives = 103/200 (51%), Gaps = 17/200 (8%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I + + +A LDAG +A PTETVYGL D++NP A+ R+Y K RPA +P+I H++ Sbjct: 7 IPTAEQIDEAAGLLDAGELVAFPTETVYGLGGDAQNPAAVARIYAAKGRPANHPVIVHLA 66 Query: 66 DISMVKKHASVDPLSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 S VD L KL FWPGPLTL+L I + + R P Sbjct: 67 PGS--DPGYWVDSLPADAQKLIDAFWPGPLTLILK--RAAHIPDAVSGGQDSVGLRCPSH 122 Query: 123 -FTKKLIETY-----GH-PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 + L+ + GH +A PSANR G +S T +H+ + ++DGG S +G Sbjct: 123 PVAQALLRAFDARRGGHGGVAAPSANRFGHVSPTTAQHVRDE--FGDAVHVLDGGPSDVG 180 Query: 176 LESTIVNVQCEKKVRILRPG 195 +ESTI+++ +LRPG Sbjct: 181 IESTILDL-SRGFPALLRPG 199 >gi|328463675|gb|EGF35267.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus rhamnosus MTCC 5462] Length = 272 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 65/172 (37%), Positives = 98/172 (56%), Gaps = 14/172 (8%) Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS---TANLKTACFRVPC-GFTKKL 127 ++A++ P + L FWPGPLT++L++L LS T L+TA FR P T+KL Sbjct: 2 QYATITPDAAKLMDTFWPGPLTIILNILPGR----LSMKVTGGLQTAAFRNPDDALTRKL 57 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I T G P+ PSAN SG+ S T H+L + +I ++D G +++G+ESTI+++ Sbjct: 58 IATAGVPIVGPSANTSGKPSPTTADHVL-HDLADKIAGVLDDGPTRVGVESTIIDLTVTP 116 Query: 188 KVRILRPGGL---EIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQV 236 ILRPG + E+E L + + V + P++PGM HYAP +QV Sbjct: 117 PA-ILRPGAIGPHELEPLLGPVD-SAAHHVGKNEAPKAPGMKYKHYAPAAQV 166 >gi|94969639|ref|YP_591687.1| translation factor SUA5 [Candidatus Koribacter versatilis Ellin345] gi|94551689|gb|ABF41613.1| translation factor SUA5 [Candidatus Koribacter versatilis Ellin345] Length = 215 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 65/187 (34%), Positives = 100/187 (53%), Gaps = 6/187 (3%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L AG+ + +PT+T YGLA D N A+ R+YEIK R PL + + ++ A P Sbjct: 25 LKAGMVLGMPTDTFYGLAADPFNLRAVERIYEIKSRSRHKPLSLMIESVDQAEELAQDLP 84 Query: 79 LSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136 S + LA+ FWPGPLT+++ + + +TAN R+P +++ G P+ Sbjct: 85 SSFYLLARRFWPGPLTMIIRAHARLPLK--ATANSGNIAVRIPSAPIPLAVLKAAGLPIT 142 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC-EKKVRILRPG 195 SAN SGQ T + L + + +PLIIDGG S + STIV++ + + RI+R G Sbjct: 143 ATSANLSGQAECTTARA-LKQQMEERLPLIIDGGNSPRDVHSTIVDLSSGDGQWRIIREG 201 Query: 196 GLEIETL 202 + E + Sbjct: 202 AVSQEQI 208 >gi|284161228|ref|YP_003399851.1| Sua5/YciO/YrdC/YwlC family protein [Archaeoglobus profundus DSM 5631] gi|284011225|gb|ADB57178.1| Sua5/YciO/YrdC/YwlC family protein [Archaeoglobus profundus DSM 5631] Length = 289 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 67/201 (33%), Positives = 110/201 (54%), Gaps = 6/201 (2%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + LR+ + G +A PTETVYGL ++ + A++RL+E+K RP P+ VSD+ Sbjct: 13 DESVLREVAHMIKEGKLVAYPTETVYGLGTNALDENAVKRLFEVKGRPK-KPVSVVVSDL 71 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126 V++ A + +L L + F+PGP+T+++ I P+ TA R+P K Sbjct: 72 DHVERIAEPNETALKLMEKFFPGPITIIVKKKKV--IPPIVTAGTDKIGIRLPDYKIPLK 129 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L E G P+ SAN SG+ S T +HI+ + K I I+D G + + +EST+++ E Sbjct: 130 LAEFSGVPVTSTSANVSGKPSPTKPEHIMVDFMGK-IDAILDAGETPLKIESTVIDTTTE 188 Query: 187 KKVRILRPGGLEIETLKRAIS 207 R+LR G L + +++ + Sbjct: 189 PP-RVLRVGALPLNEIEKVVG 208 >gi|255578866|ref|XP_002530287.1| Protein SUA5, putative [Ricinus communis] gi|223530185|gb|EEF32094.1| Protein SUA5, putative [Ricinus communis] Length = 233 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 67/193 (34%), Positives = 104/193 (53%), Gaps = 4/193 (2%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 +A E L AG IA+PT+T+YG A D+ + A+ R+YEIK R +PL + D+S +K Sbjct: 29 EEAVEALKAGKVIAVPTDTLYGFACDACSLEAVNRIYEIKGRKHTSPLAICIGDVSDIKH 88 Query: 73 HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETY 131 A D L L PG +T+VL+ ++ + L T RVP C F +++ Sbjct: 89 FAVTDHLPNGLLDSLLPGAVTVVLNRGESSALEKSLNPGLDTIGVRVPDCNFIREIAHGL 148 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKKVR 190 G +A+ SAN SG+ S +K ++ + + DGG+ G E ST+V++ K + Sbjct: 149 GRAVALTSANLSGKPSSVCIKDF--ENLWEHCAYVYDGGVLPSGREGSTVVDLSRLGKYK 206 Query: 191 ILRPGGLEIETLK 203 ILRPG + ET++ Sbjct: 207 ILRPGSAKEETVE 219 >gi|296537237|ref|ZP_06899140.1| Sua5/YciO/YrdC family protein [Roseomonas cervicalis ATCC 49957] gi|296262436|gb|EFH09158.1| Sua5/YciO/YrdC family protein [Roseomonas cervicalis ATCC 49957] Length = 185 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 60/173 (34%), Positives = 92/173 (53%), Gaps = 8/173 (4%) Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 + L+ G P+ PSANRSG +S T H+L + I ++DGG +G+EST+++ Sbjct: 6 LAQALLRAAGVPVVAPSANRSGAVSPTTAAHVLEG-LSGRIAAVLDGGPCAVGVESTVLD 64 Query: 183 VQCEKKVRILRPGGLEIETLKRAISV--ELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 + + +LRPGG+ + L+ + + + E + +PGML SHYAP VRL A Sbjct: 65 LTGATPL-LLRPGGVPEDALRALLGPIGRPDPALAEDAARPAPGMLASHYAPALPVRLEA 123 Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293 V+P+EAL+ FG + A LS++G EAA LF ++ D G Sbjct: 124 ESVSPQEALLAFG----PALPGAGAVWQLSESGDTMEAAARLFAGLRWLDAEG 172 >gi|118389926|ref|XP_001028008.1| Sua5/YciO/YrdC/YwlC family protein [Tetrahymena thermophila] gi|89309778|gb|EAS07766.1| Sua5/YciO/YrdC/YwlC family protein [Tetrahymena thermophila SB210] Length = 434 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 92/354 (25%), Positives = 161/354 (45%), Gaps = 52/354 (14%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 QI+ + +++A E L G ++ PTETVYGL ++ + A++ ++ K RP +P+I Sbjct: 31 QILDDKNEEDMKQAGELLRNGKLVSFPTETVYGLGANALDEEAVKSIFLAKNRPLTDPVI 90 Query: 62 CHVSD----ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTAC 116 H+ ++ V+ + + LA FWPGPLT++L + +I P + TA Sbjct: 91 VHIDKKEDGLNFVEITPGIKEVYDFLADNFWPGPLTMILK--ANFNIIPRVVTAQTDFVG 148 Query: 117 FRVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS--- 172 R P ++LI P+A PSAN +S T+ H+ + + I +I D Sbjct: 149 IRCPQHEVARRLIRIAQRPIAAPSANLFAHVSPTSAVHVFNDFYDQNISIINDPVQELPS 208 Query: 173 -KIGLESTIV--------NVQCEKKVR--ILRPGGLEIETLKRAISVELEY--------- 212 + G+EST+V N Q K ILR G L E + +AIS ++ Sbjct: 209 CEFGIESTVVKIEEIASSNQQENSKFNLVILRFGSLSGEQIAQAISKSDQFKDRITIVKK 268 Query: 213 ----CVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAII--- 265 V E ++PG L HY+P L + + + +++ + NI+ +II Sbjct: 269 KKENKVAEHIHSEAPGQLLKHYSPYINCYLFHLRSSDDKQDLKYPLLNDINIKESIIFDY 328 Query: 266 -------------SLNLSKTGKLKEAAFNLFNYMKIADD-SGASSIAFSSIPNH 305 ++LS+ G ++E L++ ++ A++ A +I +I +H Sbjct: 329 KNQTEHLKDKCMKYISLSEKGDMREIMTKLYDSLRWAENVDAAKNILIYNIDHH 382 >gi|299117058|emb|CBN73829.1| conserved unknown protein [Ectocarpus siliculosus] Length = 453 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 100/399 (25%), Positives = 165/399 (41%), Gaps = 91/399 (22%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS--- 68 L +A L +G +A PTETVYGL ++ + A+ ++++ K+RP +PLI HV D + Sbjct: 55 LTEAGARLRSGKLVAFPTETVYGLGANALSEDAVLKIFQAKQRPLTDPLIVHVPDTAGAL 114 Query: 69 -----MVKKHASVDPLSL--HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 V+ L L + WPGPLTL+ + + P TA R P Sbjct: 115 AVVDFEVEGGGGQKARRLLDLLGEKLWPGPLTLIAK--ADKKVPPCITAGTGFVGVRCPA 172 Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG---GISKIGLE 177 T++L+ G P+A PSANR G +S T H++ +I L++DG G +G+E Sbjct: 173 HPVTRQLLSIAGVPVAAPSANRFGHVSPTQAMHVMEDLGGSDI-LVLDGDTSGACGVGIE 231 Query: 178 STIVNVQ-CEKKVRILRPGGLEIETLKRAI------------------------------ 206 ST+ + ++ ILR GG+ + ++ A+ Sbjct: 232 STVAKIDAANDRILILRMGGVTQDRIRDALKEGGEEFSGISVYAGSVAGGKTEAKGEEER 291 Query: 207 ------SVELEYCVDETSTP-----------QSPGMLKSHYAPRSQVRLRAIHVNPREAL 249 S++ E DE P + G L HY+P +V R + P Sbjct: 292 EREARGSLKDEPAKDEGQAPGLMRQLCAISDATTGQLLRHYSPDLEV-FRVLGATPGSTS 350 Query: 250 IRF-GNVPIKNI--------------------ENAIISLNLSKTGKLKEAAFNLFNYMKI 288 R G + ++ +A+ +LS G EAA LF ++ Sbjct: 351 GRMVGGGELADLASMARTSVVVDFAGQLKGLQASAVAYSDLSIEGSADEAAKGLFRALRW 410 Query: 289 ADDS-GASSIAFSSIP---NHGLGIAINNRLERAAAPRN 323 A+ A + + +P N + A+N+R+ R+A+ + Sbjct: 411 AETQPSAQRLLIAGLPSKSNGDMAAAVNDRIYRSASGKT 449 >gi|218512322|ref|ZP_03509162.1| probable translation factor protein [Rhizobium etli 8C-3] Length = 91 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 54/90 (60%), Positives = 64/90 (71%) Query: 234 SQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293 + VRL A V P EALI FG ++ +A I L+LS G L EAA NLF+YMK AD SG Sbjct: 2 ASVRLNASAVEPGEALIAFGGAAVEGARDARIVLDLSPRGDLAEAAANLFDYMKRADASG 61 Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAAPRN 323 SSIAFS IP+ GLG AIN+RL+RAAAPR+ Sbjct: 62 VSSIAFSPIPDDGLGEAINDRLQRAAAPRD 91 >gi|91202678|emb|CAJ72317.1| similar to YrdC protein [Candidatus Kuenenia stuttgartiensis] Length = 210 Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 69/194 (35%), Positives = 100/194 (51%), Gaps = 21/194 (10%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 QI+ + + + ++ A + L G +A PTETVYGL V NP AI RLYE KKRPA Sbjct: 10 QILDVRNQDLYWTSIEIAAKALRNGGIVAFPTETVYGLGVHKDNPEAIERLYEAKKRPAE 69 Query: 58 NPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 L ++DI V+ +A +V ++ L + FWPGPL ++ L +DI C Sbjct: 70 KRLTLMIADIGEVELYAGAVSDVAKRLMESFWPGPLAIIFPLKDGSDI-----------C 118 Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R+P + LI T P+A SAN SG T+ + ++ EI I+DGG + Sbjct: 119 VRLPDNAIARDLIRTANIPVATTSANTSGHPPSTDASQV-TAYFKDEIDFILDGGPTPSH 177 Query: 176 LESTIVNVQ---CE 186 ST+V ++ CE Sbjct: 178 EPSTVVKIKDGVCE 191 >gi|167561724|ref|ZP_02354640.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia oklahomensis EO147] Length = 198 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 67/185 (36%), Positives = 97/185 (52%), Gaps = 22/185 (11%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A LDAG +A PTETVYGL D+++P A+ R+Y K RPA +P+I H++ S Sbjct: 13 IDEAAALLDAGELVAFPTETVYGLGGDAQSPAAVARIYAAKGRPANHPVIVHLAPGS--D 70 Query: 72 KHASVDPLSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 VD L KL FWPGPLTL+L I + + R P + L Sbjct: 71 PGYWVDELPADAKKLIDAFWPGPLTLILK--RAAHIPDAVSGGQDSVGLRCPSHPVAQAL 128 Query: 128 IETY-----GH-PLAIPSANRSGQISITNVKHI---LSSSICKEIPLIIDGGISKIGLES 178 + + GH +A PSANR G +S T +H+ S+ ++DGG S +G+ES Sbjct: 129 LRAFDARRGGHGGVAAPSANRFGHVSPTTAQHVRDEFGDSVH-----VLDGGASDVGIES 183 Query: 179 TIVNV 183 TI+++ Sbjct: 184 TILDL 188 >gi|328870458|gb|EGG18832.1| hypothetical protein DFA_02571 [Dictyostelium fasciculatum] Length = 560 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 76/249 (30%), Positives = 123/249 (49%), Gaps = 18/249 (7%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +I ++TD N +R A + + G +A PTETVYGL ++ + A+ ++E K RP +P+I Sbjct: 108 KIDTLTDDN-MRDAADKIRRGGLVAFPTETVYGLGANALDEKAVLSIFEAKGRPLTDPVI 166 Query: 62 CHV----SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 HV +++ + L L FWPGPLT+V ++ I P+ TA Sbjct: 167 VHVICKDEAAKLLELTDAQKRLFTTLTDAFWPGPLTIV--GRASALIPPIVTAQTGYVGV 224 Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS--KI 174 R P ++LI+ P+A PSANR G +S T H+ I ++ G + Sbjct: 225 RYPKHPVAQRLIKESQCPIAAPSANRFGHVSPTLPIHVFDDLGHSPITILEPGQDAPCAF 284 Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAI--------SVELEYCVDETSTPQSPGML 226 G+EST++ + + + ILR GG+ + +K+ +V + T ++PG L Sbjct: 285 GIESTVLKIVDDHTLCILRKGGVCEKDIKQLFQHQTISITAVNKQVSNKTTEGQEAPGQL 344 Query: 227 KSHYAPRSQ 235 +HYAP Q Sbjct: 345 LTHYAPDIQ 353 >gi|330799541|ref|XP_003287802.1| hypothetical protein DICPUDRAFT_151977 [Dictyostelium purpureum] gi|325082178|gb|EGC35669.1| hypothetical protein DICPUDRAFT_151977 [Dictyostelium purpureum] Length = 382 Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 95/367 (25%), Positives = 164/367 (44%), Gaps = 54/367 (14%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 N + + D GL ++ PTETVYGL ++ + A+ +++ K RP +P+I HV D Sbjct: 17 NIIEAGKKIKDGGL-VSFPTETVYGLGANALDEKAVLSIFQSKGRPLTDPVIVHVIDSEY 75 Query: 70 VKKHASVDPLSLHLAKL----FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFT 124 K + + K+ WPGPLT+V S+ I + TA R P Sbjct: 76 AKTLLQLTDKQKMIFKVLTDNLWPGPLTIVAK--SSELIPMIVTAQTGYVGVRYPKHDLA 133 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS-----KIGLEST 179 + LI+ G P+A PSANR G +S T H+ +I I+D KIG+EST Sbjct: 134 QLLIKHSGKPIAAPSANRFGHVSPTRAMHVFDDLGHSDIT-ILDCNEKYQSPCKIGIEST 192 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVEL----------EYCVDETSTPQ-SPGMLKS 228 ++ + + + ILR GG ++++ I + ++TS Q +PG L + Sbjct: 193 VLKIVSDDHLVILRKGGHSEKSIREIIDKHFGNEIRIEAINKTVSNQTSEGQEAPGQLLT 252 Query: 229 HYAPRSQVRLRAIHVNPRE----------------ALIRFGN-VPIKNIENAIISLNLSK 271 HYAP Q + + I FGN +P++ + +LS+ Sbjct: 253 HYAPDIQTFILENTLTNNIDNNSNNSSSNIDFSECVYIDFGNQLPMEFKNKCLAYKDLSE 312 Query: 272 TGKLKEAAFNLFNYMKIADDSGASSI---------AFSSIPNHGLGIAINNRLERAAAPR 322 + ++EA+ LF+ ++ +++ + I F + N A+ +R+ RA++ + Sbjct: 313 SCNIEEASGELFSVLRWSENVKNAKIILLPDLRKEQFKQLDNSE---AVFDRIFRASSGK 369 Query: 323 NQSQRIV 329 S ++ Sbjct: 370 YASLSLI 376 >gi|328952765|ref|YP_004370099.1| Sua5/YciO/YrdC/YwlC family protein [Desulfobacca acetoxidans DSM 11109] gi|328453089|gb|AEB08918.1| Sua5/YciO/YrdC/YwlC family protein [Desulfobacca acetoxidans DSM 11109] Length = 214 Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 71/204 (34%), Positives = 103/204 (50%), Gaps = 6/204 (2%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 D L A L G IA PTET Y LAVD+ +A+ RL ++KKRP L+ ++D Sbjct: 11 VDDRILDPALPTLQEGGVIACPTETYYALAVDAFQESALHRLLQLKKRPRSKGLLVLLAD 70 Query: 67 ISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 + M+ A+ P L+ L FWPGPLTL+L + D+ T T RV Sbjct: 71 LQMLDLVAAEVPSLAQRLMAQFWPGPLTLILK--ARPDLPKALTGGDNTIGVRVSSHPLA 128 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + L + YG P+ SAN SGQ + + I + +I LI+ GL STI+N+ Sbjct: 129 QHLPQMYGRPVTGTSANLSGQAPMISASQI-EQELGAQIDLILKNSPCGGGLPSTILNIT 187 Query: 185 CEKKVRILRPGGLEIETLKRAISV 208 C+ + ++R G + +E L+ I V Sbjct: 188 CKPPL-LVRAGAVSLEHLEECIGV 210 >gi|224104509|ref|XP_002313460.1| predicted protein [Populus trichocarpa] gi|222849868|gb|EEE87415.1| predicted protein [Populus trichocarpa] Length = 232 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 66/194 (34%), Positives = 103/194 (53%), Gaps = 8/194 (4%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 ++A E L AG IA+PT+T+YG A D+ + A+ R+YE+K R +PL V D+S ++ Sbjct: 28 QEAIEALKAGKVIAVPTDTLYGFACDACSLEAVNRIYEMKGRKHTSPLAICVGDVSQIQH 87 Query: 73 HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETY 131 A + L L PGP+T++L ++ + L + RVP C F + + Sbjct: 88 FAVTEYLPHGLLDSLLPGPVTVILRRGESSALEKSLNPGLDSVGVRVPDCNFIRVVARGL 147 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI---SKIGLESTIVNVQCEKK 188 G +A+ SAN SGQ S +K ++ + DGG+ ++ G STIV++ K Sbjct: 148 GKAVALTSANLSGQPSSLCIKDF--ENLWNRCAYVYDGGVLPSNRAG--STIVDLTRPGK 203 Query: 189 VRILRPGGLEIETL 202 +ILRPG + ETL Sbjct: 204 YKILRPGSAKEETL 217 >gi|258592148|emb|CBE68453.1| conserved protein of unknown function [NC10 bacterium 'Dutch sediment'] Length = 195 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 63/186 (33%), Positives = 99/186 (53%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A L +G +A PT+T+Y L D+ NP A+ R++E K R + P+ V+D++M Sbjct: 1 MAQAASVLRSGGLVAFPTDTLYALGADASNPLAVERVFEAKGRSLIKPIPLLVADLTMAI 60 Query: 72 KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129 + P ++ LA+ +WPGPLTLV+ T + L TA RVP LI Sbjct: 61 QLVGELPEAAVRLAERWWPGPLTLVVTAPRT--VCALLTAETGRIGLRVPDSAVALALIR 118 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 +G P+ SANRSGQ N +L + ++ L++DGG G ST+++V + + Sbjct: 119 QFGGPVTGTSANRSGQKDPMNAYEVL-HQLGDQVDLVLDGGPVVGGSPSTVIDVTTDPPI 177 Query: 190 RILRPG 195 I+R G Sbjct: 178 -IMREG 182 >gi|320353909|ref|YP_004195248.1| translation factor SUA5 [Desulfobulbus propionicus DSM 2032] gi|320122411|gb|ADW17957.1| translation factor SUA5 [Desulfobulbus propionicus DSM 2032] Length = 211 Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 72/209 (34%), Positives = 107/209 (51%), Gaps = 13/209 (6%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 +++T N R A L G+ +A PTET YGLAVD N A+ RL++IK+R P++ Sbjct: 5 LAVTPENLDRAAAVLLSGGV-VAFPTETYYGLAVDPFNQKALERLFQIKRRARELPILVL 63 Query: 64 VSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPC 121 VS V++ P + L + FWPGPLTLV S+ + T N T R P Sbjct: 64 VSSHEQVRRLVEEIPAIYNCLIEAFWPGPLTLVYPARSS--VPNRLTGNTGTVGIRHSPN 121 Query: 122 GFTKKLIETYGHPLAIPSANRSGQ---ISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 +LI+ +G P+ SANRSG ++ V+ I + E+ LI+DGG + G S Sbjct: 122 ETANRLIDVFGGPITATSANRSGSPAAVTADEVERIFDT----EVDLILDGGHTPGGSGS 177 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAIS 207 T+V + + LR G L T++ ++ Sbjct: 178 TLVGLHG-ATLTCLREGKLAFATVRSRVA 205 >gi|171057058|ref|YP_001789407.1| Sua5/YciO/YrdC/YwlC family protein [Leptothrix cholodnii SP-6] gi|170774503|gb|ACB32642.1| Sua5/YciO/YrdC/YwlC family protein [Leptothrix cholodnii SP-6] Length = 346 Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 93/320 (29%), Positives = 150/320 (46%), Gaps = 28/320 (8%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV-SDISMVKKHASVDPLSLHL 83 +A PTETVYGL + + A+ +++ K RP+ +PLI HV S + A + P++ L Sbjct: 30 VAFPTETVYGLGARADDADAVVKIFAAKGRPSDHPLIVHVADAASALAFAAELPPVARRL 89 Query: 84 AKLFWPGPLTLVLDL---LSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSA 140 FWPGPL+LV+ ++ S+ L+ V + +A PSA Sbjct: 90 MDAFWPGPLSLVVPRRADVAAAAAGGQSSVGLRCPAHPVAQALLRAAAAAGVPGVAAPSA 149 Query: 141 NRSGQISITNVKHILSS-SICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEI 199 NR G++S T H++ + ++P ++DGG ++G+ES IV+ V +LRPG L Sbjct: 150 NRFGRVSPTRAAHVIDEFADLADLP-VLDGGDCELGIESAIVDCTRGYPV-LLRPGCLGA 207 Query: 200 ETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKN 259 ++ A L DE + P++ G L++HYAPR++VRL + G++P Sbjct: 208 AQIEAAAGEPLR-SRDEQA-PRASGTLEAHYAPRAKVRLMDRQQIQTALQVLHGSLPAGK 265 Query: 260 IEN--------AIISLN---LSKTGKLKE--------AAFNLFNYMKIADDSGASSIAFS 300 A+ S S+ G L AA LF ++ DD+ I Sbjct: 266 AARAAAPGLTLAVYSRGPRPASQPGVLWRTMPADAGAAAHELFGVLRELDDALVQLIWVE 325 Query: 301 SIPNHGLGIAINNRLERAAA 320 P+ + +RL+RA+A Sbjct: 326 QPPSEPAWDGVRDRLQRASA 345 >gi|321463246|gb|EFX74263.1| hypothetical protein DAPPUDRAFT_215182 [Daphnia pulex] Length = 226 Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 75/219 (34%), Positives = 116/219 (52%), Gaps = 20/219 (9%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L+ A E L +G IA+PT+T+YG+A S++P A+++LY+IK R P+ VS +S + Sbjct: 17 LKNAVELLKSGSVIALPTDTLYGIACLSQSPEALKKLYQIKSRDKNKPVAICVSQVSEIA 76 Query: 72 K--HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLI 128 K H +VD LH PGP+TLV + + ++P K R+P F ++L Sbjct: 77 KWGHVTVDERLLH---DLLPGPVTLVFE--RSPALNPELNPGTKLVGIRIPDSWFIRQLS 131 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG----LESTIVNVQ 184 + PLA+ SAN SG S +V+ L I + + + +GG G L ST+V++ Sbjct: 132 NSCAEPLALTSANISGSQSTLSVEEFL--GIWEHLGAVFNGGPIPDGSTARLGSTVVDLS 189 Query: 185 CEKKVRILRPGGLEIETLKRAISVELE-YCVDETSTPQS 222 RI+RPG + T+++ LE Y + E S P S Sbjct: 190 SPGTYRIIRPGCAQTITVEK-----LEKYGLVEASEPAS 223 >gi|225435305|ref|XP_002285123.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|297746251|emb|CBI16307.3| unnamed protein product [Vitis vinifera] Length = 272 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 69/198 (34%), Positives = 103/198 (52%), Gaps = 5/198 (2%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 TD++A +A E + AG IA+PT+T+YG A D+ + A+ R+YEIK R +PL V D Sbjct: 63 TDAHA-EEAIEAIKAGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGD 121 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125 + +++ A D L L PGP+T+VL + I L + RVP C F + Sbjct: 122 VLDIQRFAVTDHLPDGLLGSLLPGPVTVVLRRGELSIIEKSLNPGLDSIGVRVPDCDFIR 181 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIVNVQ 184 + LA+ SAN SGQ S +K ++ + + DGG+ G ST+V++ Sbjct: 182 VIAHGSETALALTSANLSGQPSSVCIKDF--ENLWEHCAYVYDGGVLPSGRAGSTVVDLS 239 Query: 185 CEKKVRILRPGGLEIETL 202 K +ILRPG ET+ Sbjct: 240 RLGKYKILRPGSAMEETV 257 >gi|157118653|ref|XP_001659198.1| hypothetical protein AaeL_AAEL001412 [Aedes aegypti] gi|108883260|gb|EAT47485.1| conserved hypothetical protein [Aedes aegypti] Length = 251 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 60/200 (30%), Positives = 105/200 (52%), Gaps = 12/200 (6%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 ++ +D+ A+R+A L++G IA+PT+TVYGLA + +P AI+RLY IK R P+ Sbjct: 38 VIKSSDNKAIRQAANLLESGKVIALPTDTVYGLACSANDPKAIQRLYAIKGREEKKPVAI 97 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 V+D + ++ + L L + PGP+T+V+ D +P ++ R+P Sbjct: 98 CVADFNDLRHWGQANHLPNELLEQLLPGPVTIVVRKSVHLD-NPFLNPGVEKIGIRIPDF 156 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE---- 177 F + + + P+A+ SANRS + S NV + + + DGG ++GL Sbjct: 157 DFIRDVSRAFRFPVALTSANRSSEQSTLNVGEF--EKLWPALGAVFDGG--QLGLREEQR 212 Query: 178 --STIVNVQCEKKVRILRPG 195 ST++++ + +I+R G Sbjct: 213 AASTVIDLSQVGQYKIIRKG 232 >gi|110669557|ref|YP_659368.1| DNA binding protein; translation factor [Haloquadratum walsbyi DSM 16790] gi|109627304|emb|CAJ53794.1| probable DNA binding protein; probable translation factor [Haloquadratum walsbyi DSM 16790] Length = 235 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 59/177 (33%), Positives = 97/177 (54%), Gaps = 6/177 (3%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 DS+ L A + +G + PTETVYGL VD+ NP AI+R+++ K R NPL V + Sbjct: 31 DSDVLSAAVRAIKSGELVVYPTETVYGLGVDALNPDAIKRVFDTKGRTYDNPLSLAVESV 90 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-K 126 S V +H + ++ K F PGP+T++++ +T + + TA R+P Sbjct: 91 SAVARHTNPSERAMQFIKAFLPGPVTVIVEC--STAVPDILTAGRDRVGIRIPDHHVALS 148 Query: 127 LIETYG-HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 L+E P+ SAN+SG SI + ++L+ SI + + ++++ G G EST+V+ Sbjct: 149 LLERAAPTPITATSANQSGTGSIVDT-NMLAQSIQQNVAVVLEAG-ETTGTESTVVD 203 >gi|77919164|ref|YP_356979.1| Sua5/YciO/YrdC/YwlC family protein [Pelobacter carbinolicus DSM 2380] gi|77545247|gb|ABA88809.1| translation factor SUA5 [Pelobacter carbinolicus DSM 2380] Length = 204 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 59/194 (30%), Positives = 101/194 (52%), Gaps = 6/194 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + E + G +A PT+T+YGL D N I+R+Y+IK+R P +D+S V Sbjct: 15 ISRVVECIKQGGIVAYPTDTIYGLGCDIFNRKGIKRIYQIKERVHRKPFSFICADLSDVA 74 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 +A V + + K + PGP T VL+ +T + L KT R+P + ++ Sbjct: 75 NYAQVSNFAFKIMKRYLPGPYTFVLE--ATRVVPDLLVTKQKTVGIRIPSNPISLAIVRE 132 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 GHPL SAN SG+ + ++ + K+I +++DGGI K G ST++++ + + Sbjct: 133 LGHPLVTTSANLSGEEPCCD-PSLIEEELGKQINMVVDGGIIK-GEASTVISL-IDDNIE 189 Query: 191 ILRPGGLEIETLKR 204 +LR G +I + + Sbjct: 190 VLRQGAGDISWIHQ 203 >gi|312375719|gb|EFR23031.1| hypothetical protein AND_13789 [Anopheles darlingi] Length = 247 Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 59/200 (29%), Positives = 104/200 (52%), Gaps = 12/200 (6%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 +++ITD +A+R+A L++G IA+PT+TVYGLA + NP AI++LY IK R P+ Sbjct: 26 LIAITDGSAIRQAANLLESGQVIALPTDTVYGLACSANNPAAIQKLYAIKGRHEQKPVAI 85 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 V+D ++ D L L + PG +T+V+ D +P ++ R+P Sbjct: 86 CVADFDDLRYWGQADHLPDALLRQLLPGAVTIVVRKSLHLD-NPFLNPGIEKIGIRIPDF 144 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE---- 177 F + + + +P+A+ SAN+S S NV + + + DGG ++G Sbjct: 145 KFIRDVSRAFRYPIALTSANKSACQSTLNVHEF--QCLWSSLGAVFDGG--QLGQSDEQR 200 Query: 178 --STIVNVQCEKKVRILRPG 195 ST++++ + +++R G Sbjct: 201 AASTVIDLSEDGSYQLIRAG 220 >gi|189485673|ref|YP_001956614.1| Sua5-related translation factor [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287632|dbj|BAG14153.1| Sua5-related translation factor [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 202 Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 61/200 (30%), Positives = 101/200 (50%), Gaps = 7/200 (3%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D A +K E + G +PT+TVYG AVD+ N A + +Y+IK R I V DI Sbjct: 9 DKMAYKKVAEVIRNGGIAIVPTDTVYGFAVDAFNIEAQKVVYKIKGRSHKKSFILMVPDI 68 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126 ++ + +L +AK FWPG LTL+ L TT++ + + K R+P F K Sbjct: 69 ESIRILVEIPEKALKIAKRFWPGQLTLI---LPTTEMGKILSGGKKDLGVRIPDSKFMLK 125 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L++ G P+ S N S + S N+ L + + + +DGG + EST++++ + Sbjct: 126 LLKEMGSPVFTTSVNMSNKKSAKNIDETLRFD--EMVDIAVDGGQCRFSFESTVIDM-VK 182 Query: 187 KKVRILRPGGLEIETLKRAI 206 ++R G L+ + + + I Sbjct: 183 FPYMVVRRGCLDTDKILKCI 202 >gi|313899365|ref|ZP_07832876.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium sp. HGF2] gi|312955818|gb|EFR37475.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium sp. HGF2] Length = 214 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 63/200 (31%), Positives = 104/200 (52%), Gaps = 6/200 (3%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D +++ E L G +A PT+TV+GL V N A+R+L E K RP P+ V+D+ Sbjct: 17 DKKDVKEVAELLKNGQVVAFPTDTVFGLGVIYENEEALRKLKESKGRPENKPIPTMVADV 76 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 +K A + ++ LA F PG T++L T + T T R+P F + Sbjct: 77 EQMKCIAQMPAEAVALADAFMPGAFTMILKKQET--LPDYVTNGFPTVGIRMPDDPFVLR 134 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LI+ G PL + SANRSG+ + + +L + +++ G +K L STIV++ E Sbjct: 135 LIKECGKPLLVTSANRSGEETGVRDEQVLEQLDGRIDAIVL--GEAKGKLASTIVDM-SE 191 Query: 187 KKVRILRPGGLEIETLKRAI 206 ++ RI+R G + + +K+ + Sbjct: 192 EEPRIVREGPISADDIKKVL 211 >gi|325528913|gb|EGD05947.1| putative translation factor [Burkholderia sp. TJI49] Length = 195 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 63/173 (36%), Positives = 88/173 (50%), Gaps = 24/173 (13%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 +A PTETVYGL D+ NP A+ R+Y K RPA +P+I H+ VD L Sbjct: 27 VAFPTETVYGLGGDAANPEAVARIYAAKGRPANHPVIVHLPPGG--DPGYWVDALPADAQ 84 Query: 85 KL---FWPGPLTLVLDLLSTTDIHP----LSTANLKTACFRVPCG-FTKKLIETY----- 131 KL FWPGPLTL+L HP + + R P + L+ + Sbjct: 85 KLIDAFWPGPLTLILKR------HPRIPDAVSGGQDSVGLRCPSHPVAQALLAAFSARRG 138 Query: 132 GH-PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 GH +A PSANR G +S T +H+ + ++DGG S++G+ESTIV++ Sbjct: 139 GHGGVAAPSANRFGHVSPTTAQHVRDE--FGDTVHVLDGGASEVGIESTIVDL 189 >gi|224000475|ref|XP_002289910.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220975118|gb|EED93447.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 410 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 15/234 (6%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 +L A E L +G ++ PTETVYGL + +P A++R+++ K+RP +PLI HV+ + Sbjct: 51 SLTTAGERLRSGHLVSFPTETVYGLGCHALDPVAVQRVFDAKERPLSDPLIVHVTSQQIQ 110 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + L F+PGPLT+V + I + AN R P + LI+ Sbjct: 111 QMQQLEKQALQTLTASFFPGPLTIVAK--AKPSIPQILMANTGYVACRSPSHPIARALIK 168 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV-NVQCEKK 188 P+A PSAN+ G +S T +H++ + +E I D + ++G+EST+ + Sbjct: 169 CAKCPIAAPSANKFGHVSPTLARHVM-DDLGREDVWISDSAVCQVGVESTVAKDNGFVGS 227 Query: 189 VRILRPGGLEIETLKRAI---SVELEYCVDET--STPQ-----SPGMLKSHYAP 232 + +LR G + ++ A+ +++ + V + TP+ +PG HY+P Sbjct: 228 ITVLRHGAISSAAIRVALKQSNLDQYFDVKDAVQYTPENVNNVAPGQTVKHYSP 281 >gi|325694522|gb|EGD36431.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK150] Length = 196 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 64/179 (35%), Positives = 98/179 (54%), Gaps = 8/179 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L AG + +PTETVYGL + N A+ R+YE+K+RP L +V+ + + + P Sbjct: 8 LAAGGAVVLPTETVYGLFAQALNEEAVERVYELKRRPRDKALNLNVASLEEIYAFSKNQP 67 Query: 79 LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136 L HL + F PGPLT++L + + + ++T FR+P T LI+ YG PL Sbjct: 68 SYLDHLYQAFLPGPLTIILQ--ANDRVPTWINSGMETVGFRIPKHPVTLDLIQKYG-PLI 124 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 PSAN SG+ S T+ + I+ +E+ + D + G +STI+++ E K ILR G Sbjct: 125 GPSANLSGKASGTSFQQIM-MDFQEEVSGVEDDA-ALTGQDSTILDLSGE-KAHILRQG 180 >gi|94265014|ref|ZP_01288783.1| Sua5/YciO/YrdC/YwlC [delta proteobacterium MLMS-1] gi|93454503|gb|EAT04788.1| Sua5/YciO/YrdC/YwlC [delta proteobacterium MLMS-1] Length = 208 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 63/178 (35%), Positives = 96/178 (53%), Gaps = 7/178 (3%) Query: 20 DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL 79 + GL +A PTET YGLAVD NP A++RL+ K+RPA P++ V+ M+ S P Sbjct: 25 EGGL-VAFPTETYYGLAVDPFNPVALKRLFTAKQRPAQKPILNLVATQQMLPTLVSRVPE 83 Query: 80 SL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAI 137 + L FWPGPLTL+ + ++ TAN T R+ + L G P+ Sbjct: 84 AYRELMAAFWPGPLTLIFP--ARPELPAALTANSGTVGVRISSHPLAQALAAACGGPITA 141 Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 SAN SG+ + + + + I LI+DGGI+ G ST+V + ++++R++R G Sbjct: 142 TSANLSGRAAAVSAAEV-EAQFGSGIDLILDGGITPGGTGSTLVGL-VDEELRLIREG 197 >gi|94269403|ref|ZP_01291453.1| Sua5/YciO/YrdC/YwlC [delta proteobacterium MLMS-1] gi|93451234|gb|EAT02135.1| Sua5/YciO/YrdC/YwlC [delta proteobacterium MLMS-1] Length = 212 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 63/178 (35%), Positives = 96/178 (53%), Gaps = 7/178 (3%) Query: 20 DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL 79 + GL +A PTET YGLAVD NP A++RL+ K+RPA P++ V+ M+ S P Sbjct: 29 EGGL-VAFPTETYYGLAVDPFNPVALKRLFTAKQRPAQKPILNLVATQQMLPTLVSRVPE 87 Query: 80 SL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAI 137 + L FWPGPLTL+ + ++ TAN T R+ + L G P+ Sbjct: 88 AYRELMAAFWPGPLTLIFP--ARPELPAALTANSGTVGVRISSHPLAQALAAACGGPITA 145 Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 SAN SG+ + + + + I LI+DGGI+ G ST+V + ++++R++R G Sbjct: 146 TSANLSGRAAAVSAAEV-EAQFGSGIDLILDGGITPGGTGSTLVGL-VDEELRLIREG 201 >gi|312865283|ref|ZP_07725511.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus downei F0415] gi|311099394|gb|EFQ57610.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus downei F0415] Length = 199 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 70/209 (33%), Positives = 110/209 (52%), Gaps = 12/209 (5%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + D AL+ L G + +PTETVYGL + + +A++++Y +K RPA + +V+ Sbjct: 1 MADLEALKAT---LAEGGAVVLPTETVYGLFAKALDESAVKKVYALKGRPADKAMNLNVA 57 Query: 66 DISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 + ++ P L L + F+PGPLT++L + + A L + FR+P Sbjct: 58 SYQDILDYSQDQPSYLEKLYQAFFPGPLTIILK--ANDKVPGWVNAGLDSVGFRLPQHPV 115 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 T++LI +G PL PSAN SGQ S +I++ K L DG I GL+STI+++ Sbjct: 116 TQELIAQFG-PLVGPSANISGQASGKVFANIMADFDQKVTGLADDGAIQ--GLDSTILDL 172 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEY 212 K +ILR G + E L + EL+Y Sbjct: 173 SGTKP-KILRQGAISKEDLLEVVP-ELKY 199 >gi|226500320|ref|NP_001148954.1| ischemia/reperfusion inducible protein [Zea mays] gi|195623606|gb|ACG33633.1| ischemia/reperfusion inducible protein [Zea mays] Length = 275 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 66/190 (34%), Positives = 94/190 (49%), Gaps = 4/190 (2%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 KA + ++ G IA+PT+T+YG A D+ + A+ R+YEIK R PL V D+S + + Sbjct: 75 KATDAINRGEVIAVPTDTIYGFACDACSAGAVNRIYEIKGRIQTRPLAICVGDVSDISRF 134 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYG 132 A VD L L PGP+T+VL + + L + RVP F + ++ G Sbjct: 135 ALVDHLPHGLLDSLLPGPVTIVLKRGENSILERSLNPGLDSIGVRVPDLDFIRSIVRGTG 194 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIVNVQCEKKVRI 191 LA+ SAN SGQ S VK + + DGG+ G STIV++ +I Sbjct: 195 SALALTSANLSGQPSSVCVKDF--EGLWPHCSYVFDGGVLPSGRAGSTIVDLITPGVYKI 252 Query: 192 LRPGGLEIET 201 LR G ET Sbjct: 253 LRDGSSRKET 262 >gi|302037883|ref|YP_003798205.1| putative dsRNA-binding protein [Candidatus Nitrospira defluvii] gi|300605947|emb|CBK42280.1| putative dsRNA-binding protein, predicted ribosome maturation factor [Candidatus Nitrospira defluvii] Length = 215 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 65/209 (31%), Positives = 107/209 (51%), Gaps = 9/209 (4%) Query: 3 IMSITDSN---ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 ++ TD+ L + LDA +A+PTET YGLAV + A++ L E+K RPA P Sbjct: 4 VLPFTDTTCDLVLSDVRQVLDAHGVVALPTETYYGLAVRPTDTAALQHLMELKGRPADKP 63 Query: 60 LICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 ++ + + + S+ P + L +LFWPGPLT+V + D+ L TA T R Sbjct: 64 ILVLIGSPDQLPQLVRSIPPAAALLMELFWPGPLTIVFP--AAPDLPALLTAGTGTIGVR 121 Query: 119 VPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 + + + PL SANRS + S+ + ++ + LI+DGG + GL S Sbjct: 122 LSPLLQLQHLLQRTGPLTGTSANRSSEPSLDTAAAV-QGALGAGVDLILDGGPTPGGLPS 180 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAIS 207 T+V+ + + +LR G L + ++ A++ Sbjct: 181 TMVDAR--DRPHLLRAGALPTDLIRAALA 207 >gi|242036585|ref|XP_002465687.1| hypothetical protein SORBIDRAFT_01g043750 [Sorghum bicolor] gi|241919541|gb|EER92685.1| hypothetical protein SORBIDRAFT_01g043750 [Sorghum bicolor] Length = 275 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 66/190 (34%), Positives = 95/190 (50%), Gaps = 4/190 (2%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 KA + ++ G IA+PT+T+YG A D+ + A+ R+YEIK R PL V+D+S + + Sbjct: 75 KATDAINRGEVIAVPTDTIYGFACDACSAGAVNRIYEIKGRIQTRPLAICVADVSDISRF 134 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYG 132 A VD L L PGP+T+VL + + L + RVP F + + G Sbjct: 135 ALVDHLPHGLLDSLLPGPVTVVLKRGENSILERSLNPGLDSIGVRVPDLDFIRSIARGAG 194 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIVNVQCEKKVRI 191 LA+ SAN SGQ S +VK + + DGG+ G STIV++ +I Sbjct: 195 SALALTSANLSGQPSSVSVKDF--EGLWPHCSCVFDGGVLPSGRAGSTIVDLITPGVYKI 252 Query: 192 LRPGGLEIET 201 LR G ET Sbjct: 253 LRDGSSRKET 262 >gi|125542795|gb|EAY88934.1| hypothetical protein OsI_10418 [Oryza sativa Indica Group] Length = 274 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 68/202 (33%), Positives = 102/202 (50%), Gaps = 5/202 (2%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 I+ T+ + + KA + ++ G IA+PT+T+YG A D+ + A+ R+YEIK R PL Sbjct: 63 HILPATNDHVM-KAIDSINRGQVIAVPTDTIYGFACDACSAEAVNRIYEIKGRVQTRPLA 121 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120 V+D+ + + A VD L L PGP+T+VL + + + L++ RVP Sbjct: 122 ICVADVPDISRFAVVDHLPHGLLDSLLPGPVTVVLKRGNNSILERSLNPGLESIGVRVPD 181 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LEST 179 F + + G LA+ SAN SG+ S NVK + + DGGI G ST Sbjct: 182 FDFIRAISRGAGSALALTSANLSGRPSSVNVKDF--EDLWPHCSYVFDGGILPSGRAGST 239 Query: 180 IVNVQCEKKVRILRPGGLEIET 201 IV++ +ILR G ET Sbjct: 240 IVDLITPGVYKILRDGSSRQET 261 >gi|125717979|ref|YP_001035112.1| hypothetical protein SSA_1154 [Streptococcus sanguinis SK36] gi|125497896|gb|ABN44562.1| Conserved hypothetical protein [Streptococcus sanguinis SK36] Length = 196 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 67/186 (36%), Positives = 100/186 (53%), Gaps = 8/186 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L AG + +PTETVYGL + N A+ R+YE+K+RP L +V+ I + + P Sbjct: 8 LVAGGAVVLPTETVYGLFAQALNEEAVERVYELKRRPRDKALNLNVASIEEIYAFSKNQP 67 Query: 79 LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136 L L + F PGPLT++L + + + ++T FR+P T LI YG PL Sbjct: 68 SYLKQLYQAFLPGPLTIILQ--ANDRVPTWINSGMETVGFRIPKHPVTLDLIRKYG-PLI 124 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SG+ S T+ + I+ +EI + D S G +STI+++ EK + ILR G Sbjct: 125 GPSANLSGKASGTSFQQIM-MDFQEEISGVEDDA-SLTGQDSTILDLSGEKAL-ILRQGA 181 Query: 197 LEIETL 202 + E + Sbjct: 182 ITREYI 187 >gi|324991174|gb|EGC23108.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK353] Length = 196 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 67/186 (36%), Positives = 100/186 (53%), Gaps = 8/186 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L AG + +PTETVYGL + N A+ R+YE+K+RP L +V+ I + + P Sbjct: 8 LVAGGAVVLPTETVYGLFAQALNEEAVERVYELKRRPRDKALNLNVASIEEIYAFSKNQP 67 Query: 79 LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136 L L + F PGPLT++L + + + ++T FR+P T LI YG PL Sbjct: 68 SYLKQLYQAFLPGPLTIILQ--ANDRVPTWINSGMETVGFRIPKHPVTLDLIRKYG-PLI 124 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SG+ S T+ + I+ +EI + D S G +STI+++ EK + ILR G Sbjct: 125 GPSANLSGKASGTSFQQIM-MDFQEEISGVEDDA-SLTGQDSTILDLSGEKAL-ILRQGA 181 Query: 197 LEIETL 202 + E + Sbjct: 182 ITREDI 187 >gi|108706710|gb|ABF94505.1| yrdC protein, putative, expressed [Oryza sativa Japonica Group] gi|125585293|gb|EAZ25957.1| hypothetical protein OsJ_09812 [Oryza sativa Japonica Group] gi|215695443|dbj|BAG90626.1| unnamed protein product [Oryza sativa Japonica Group] Length = 274 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 68/202 (33%), Positives = 101/202 (50%), Gaps = 5/202 (2%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 I+ T+ + + KA + ++ G IA+PT+T+YG A D+ + A+ R+YEIK R PL Sbjct: 63 HILPATNDHVM-KAIDSINRGQVIAVPTDTIYGFACDACSAEAVNRIYEIKGRVQTRPLA 121 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120 V+D+ + + A VD L L PGP+T+VL + + + L++ RVP Sbjct: 122 ICVADVPDISRFAVVDHLPHGLLDSLLPGPVTVVLKRGNNSILERSLNPGLESIGVRVPD 181 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LEST 179 F + + G LA+ SAN SG S NVK + + DGGI G ST Sbjct: 182 FDFIRAISRGAGSALALTSANLSGHPSSVNVKDF--EDLWPHCSYVFDGGILPSGRAGST 239 Query: 180 IVNVQCEKKVRILRPGGLEIET 201 IV++ +ILR G ET Sbjct: 240 IVDLITPGVYKILRDGSSRQET 261 >gi|85000901|ref|XP_955169.1| hypothetical protein [Theileria annulata strain Ankara] gi|65303315|emb|CAI75693.1| hypothetical protein, conserved [Theileria annulata] Length = 703 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 69/176 (39%), Positives = 90/176 (51%), Gaps = 9/176 (5%) Query: 18 FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASV 76 ++ G IAIPTETVYGLA + ++ R++ IK RP +PLI HV +H V Sbjct: 84 LMEPGGLIAIPTETVYGLAGNIHLENSLLRIFSIKDRPFNDPLIVHVHSFLYALRHLYDV 143 Query: 77 DP----LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY 131 + L L LA+ F PGPLT+V I PL T R P T KL+E Sbjct: 144 NDVEAFLILFLAEKFAPGPLTIV--ARKAQSISPLLTNQTDFIAVRCPNNKVTLKLLEFI 201 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 PLA PSAN+ G IS T +H+ + E I+D G IG+ESTI+ + K Sbjct: 202 QVPLAAPSANKFGHISPTCPEHV-KNEFPNEDLYILDDGNCTIGIESTIIKLTSNK 256 >gi|226325557|ref|ZP_03801075.1| hypothetical protein COPCOM_03362 [Coprococcus comes ATCC 27758] gi|225206040|gb|EEG88394.1| hypothetical protein COPCOM_03362 [Coprococcus comes ATCC 27758] Length = 412 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 72/239 (30%), Positives = 115/239 (48%), Gaps = 34/239 (14%) Query: 108 STANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLI 166 +T L+T R+P ++LI G ++ PSAN SG+ S T +H+ + + +I +I Sbjct: 13 TTGGLETVAVRMPDDEIARELILAGGGYVSAPSANTSGRPSPTTAQHV-AEDLSGKIEMI 71 Query: 167 IDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDET-------ST 219 +DGG IG+ESTI+++ + ILRPG + E L I E VDET Sbjct: 72 LDGGSVDIGVESTILDMTVTPPM-ILRPGAITKEMLSEVIG---EVAVDETLISENSTKA 127 Query: 220 PQSPGMLKSHYAPRSQVRLRAIHVNPREAL----------IRFG--------NVPIKNIE 261 P++PGM HYAP++++ + + P EA+ +R G N + Sbjct: 128 PKAPGMKYRHYAPKAEMII--VDGEPEEAVRAIKQIAYEQVRLGYKVGIIASNESVDQYT 185 Query: 262 NAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ S+ + K A NL+ ++ D+ I + P G+G AI NRL +AA Sbjct: 186 TGVVKCIGSRVNE-KTVARNLYKVLREFDEEEVDYIYSEAFPEAGIGTAIMNRLGKAAG 243 >gi|221059790|ref|XP_002260540.1| dsRNA binding protein [Plasmodium knowlesi strain H] gi|193810614|emb|CAQ42512.1| dsRNA binding protein, putative [Plasmodium knowlesi strain H] Length = 545 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 69/228 (30%), Positives = 118/228 (51%), Gaps = 19/228 (8%) Query: 5 SITDSNALRKACE-FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 + ++ LRK + ++A + +PTETVYGL +S + ++R ++E+K RP +P+I H Sbjct: 9 DLLENEQLRKRLKAHIEADCLVGMPTETVYGLGGNSLSEKSLRNIFEMKNRPVSDPIISH 68 Query: 64 VSDISMVKK---HASV-DPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 V DI H +V + +++ L+K FWPGPL+++ + ++ + TA+ R Sbjct: 69 VYDIKQAFDQLYHVNVFEMFTIYTLSKYFWPGPLSIIAK--AKKELPLILTAHTGFCAVR 126 Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 +P ++I+ P+A PSAN+ IS T H+ KE +I D G IG+E Sbjct: 127 MPRNNIAIEIIKVSQVPIAAPSANKFQHISPTTSAHVF-QEFEKEKIIIFDDGQCDIGIE 185 Query: 178 STIVNVQCEKKVRILRP-----GGLEIETLK-RAISVELEY---CVDE 216 ST++ + KK +P G E ++ ++ + EY C DE Sbjct: 186 STVLKLVKFKKTGDRKPNRLSGAGETCEAIQEEEVTTDDEYEKECTDE 233 >gi|167585582|ref|ZP_02377970.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia ubonensis Bu] Length = 214 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 64/185 (34%), Positives = 94/185 (50%), Gaps = 25/185 (13%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV---SDISMVKKHASVDPLSL 81 +A PTETVYGL D+ NP A+ R+Y K RPA +P+I H+ D + D + Sbjct: 27 VAFPTETVYGLGGDAANPEAVARIYAAKGRPANHPVIVHLPPGGDPGYWVEALPDD--AR 84 Query: 82 HLAKLFWPGPLTLVLDLLSTTDIHP----LSTANLKTACFRVPCG-FTKKLIETY----- 131 L FWPGPLTL+L HP + + R P + L++ + Sbjct: 85 KLIDAFWPGPLTLILKR------HPRIPDAVSGGQDSVGLRCPSHPVAQALLDAFSARRG 138 Query: 132 GH-PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 GH +A PSANR G +S T +H+ + ++DGG S++G+ESTI+++ Sbjct: 139 GHGGVAAPSANRFGHVSPTTAQHVRDE--FGDTVHVLDGGPSEVGIESTILDL-SRGFPA 195 Query: 191 ILRPG 195 +LRPG Sbjct: 196 LLRPG 200 >gi|158285728|ref|XP_308435.3| AGAP007397-PA [Anopheles gambiae str. PEST] gi|157020133|gb|EAA04653.3| AGAP007397-PA [Anopheles gambiae str. PEST] Length = 272 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 62/200 (31%), Positives = 99/200 (49%), Gaps = 10/200 (5%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +++S +A A L AG IAIPT+TVYGL + NP AI RLY IK R + P+ Sbjct: 58 KVISTNRKDAKAIAVAKLQAGEVIAIPTDTVYGLTCSANNPEAIHRLYNIKGRHELKPVA 117 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 V+ I V++ D L+ L +PG +TLV+ S + L+ Sbjct: 118 ICVASIEDVRQWGETDHLNDELLGELFPGAVTLVVRRSSKLNNPALNPGVANIGIRITEN 177 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE---- 177 F + + E + P+A+ SAN+S S NV+ + E+ + DGG ++GL Sbjct: 178 KFIQHVCEAFQQPIALTSANKSSSKSTLNVEEF--KELWGELGAVFDGG--QLGLSEEQR 233 Query: 178 --STIVNVQCEKKVRILRPG 195 ST++++ ++ +I+R G Sbjct: 234 AASTVIDLSEPERYKIIRWG 253 >gi|322435977|ref|YP_004218189.1| Sua5/YciO/YrdC/YwlC family protein [Acidobacterium sp. MP5ACTX9] gi|321163704|gb|ADW69409.1| Sua5/YciO/YrdC/YwlC family protein [Acidobacterium sp. MP5ACTX9] Length = 214 Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 60/182 (32%), Positives = 93/182 (51%), Gaps = 6/182 (3%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVD 77 +++GL +A+PT+T YGLAVD N A+ R+Y +K R PL ++D++ A D Sbjct: 25 IESGLLVALPTDTFYGLAVDPVNLRAVERIYHLKNRARHKPLSLLIADVAQAYGLARECD 84 Query: 78 PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLA 136 LA+ FWPGPLT+++ S + TAN RVP + ++ G P+ Sbjct: 85 TAFDRLAERFWPGPLTIIVKAGSKLPLR--VTANTGNVALRVPEAPIARAVVAKLGLPIT 142 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ-CEKKVRILRPG 195 SAN G T+ + + +IPLI+DGG + + +TIV++ ILR G Sbjct: 143 ATSANLEGHAECTSASGV-REQLGDKIPLIVDGGPTARTVATTIVDLSGGGNSWTILREG 201 Query: 196 GL 197 + Sbjct: 202 AI 203 >gi|156101636|ref|XP_001616511.1| hypothetical protein [Plasmodium vivax SaI-1] gi|148805385|gb|EDL46784.1| hypothetical protein, conserved [Plasmodium vivax] Length = 560 Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 61/201 (30%), Positives = 104/201 (51%), Gaps = 14/201 (6%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI-SMVK 71 R+ ++A + +PTETVYGL +S + ++R ++++K RP +P+I HV D+ Sbjct: 23 RRLRAHIEADCLVGMPTETVYGLGGNSLSERSLRNIFQMKNRPVSDPIISHVYDVRQAFD 82 Query: 72 KHASVDPLSLH----LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126 + V+P + L K FWPGPL+++ + ++ + TA+ R+P + Sbjct: 83 QLYHVNPFEMFVIYSLGKSFWPGPLSIIAK--AKKEVPLILTAHTGFCAVRMPRNNIALE 140 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 +I+ P+A PSAN+ IS T H+ + + LI D G IG+EST++ + Sbjct: 141 IIKVSQVPIAAPSANKFQHISPTTAAHVYKEFESENV-LIFDDGQCDIGIESTVLKLLKF 199 Query: 187 KKV-----RILRPGGLEIETL 202 +KV LR GG +E + Sbjct: 200 RKVGGAQSNELRGGGQILEEI 220 >gi|297569316|ref|YP_003690660.1| Sua5/YciO/YrdC/YwlC family protein [Desulfurivibrio alkaliphilus AHT2] gi|296925231|gb|ADH86041.1| Sua5/YciO/YrdC/YwlC family protein [Desulfurivibrio alkaliphilus AHT2] Length = 221 Score = 89.4 bits (220), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 66/201 (32%), Positives = 101/201 (50%), Gaps = 8/201 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +A + G +A PTET YGLAVD N A+ RL+ +K+R P++C V D + Sbjct: 16 LEQAAAIIRRGGIVAFPTETYYGLAVDPFNREALSRLFALKRRAPDKPILCLVPDREHLF 75 Query: 72 KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKKLI 128 A S+ P L + FWPGPLTL+ + + P+S T T R+ +L Sbjct: 76 SLADSIPPSYEPLMEAFWPGPLTLI---FTAREEVPVSLTGYSGTVGVRLSSHPVAARLA 132 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 + YG + SAN SG + N + + + ++ I+DGG + G ST+V V+ E+ Sbjct: 133 QIYGGAITATSANFSGHPAAVNAAEV-GAQLGPDVDYILDGGETPGGAGSTLVGVENEQL 191 Query: 189 VRILRPGGLEIETLKRAISVE 209 V + RPG + + L + E Sbjct: 192 V-LRRPGVITRQELNDVLGPE 211 >gi|332360427|gb|EGJ38238.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK355] Length = 196 Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 65/186 (34%), Positives = 100/186 (53%), Gaps = 8/186 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L AG + +PTETVYGL + N A+ R+YE+K+RP L +V+ + + + P Sbjct: 8 LAAGGAVVLPTETVYGLFAQALNQEAVERVYELKRRPRDKALNLNVASLEEIYAFSKNQP 67 Query: 79 LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136 L L + F PGPLT++L + + + ++T FR+P T LI YG PL Sbjct: 68 SYLEQLYQAFLPGPLTIILQ--ANDRVPAWINSGMETVGFRIPKHPVTLDLIRKYG-PLI 124 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SG+ S T+ + I+ +E+ + D S G +STI+++ EK + ILR G Sbjct: 125 GPSANLSGKASGTSFQRIM-MDFQEEVSGVEDDA-SLTGQDSTILDLSGEKAL-ILRQGA 181 Query: 197 LEIETL 202 + E + Sbjct: 182 ITREDI 187 >gi|332361223|gb|EGJ39027.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK1056] Length = 196 Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 66/186 (35%), Positives = 100/186 (53%), Gaps = 8/186 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + K + L AG + +PTETVYGL + N A+ R+YE+K+RP L +V+ + + Sbjct: 1 MDKIEKTLAAGGAVVLPTETVYGLFAQALNEEAVERVYELKRRPRDKALNLNVASLEEIY 60 Query: 72 KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P L HL + F PGPLT++L + + + +T FR+P T LI Sbjct: 61 AFSKNQPSYLDHLYQAFLPGPLTIILQ--ANDRVPAWINSGKETVGFRIPKHPVTLDLIR 118 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 YG PL PSAN SG+ S T+ + I+ +E+ + D S G +STI+++ EK + Sbjct: 119 KYG-PLIGPSANLSGKASGTSFQQIM-MDFQEEVSGVEDDD-SLTGQDSTILDLSGEKAL 175 Query: 190 RILRPG 195 ILR G Sbjct: 176 -ILRQG 180 >gi|157150566|ref|YP_001450439.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus gordonii str. Challis substr. CH1] gi|157075360|gb|ABV10043.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus gordonii str. Challis substr. CH1] Length = 206 Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 64/193 (33%), Positives = 100/193 (51%), Gaps = 8/193 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + K L AG + +PTETVYGL + N A+ R+YE+K+RP L +V+ + + Sbjct: 11 MDKIENILAAGGAVVLPTETVYGLFAQALNEEAVERVYELKRRPRDKALNLNVASLEEIY 70 Query: 72 KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P L L + F PGPLT++L + + + + T FR+P T LI Sbjct: 71 AFSKNQPTYLDQLYQAFLPGPLTIILQ--ANDQVPTWINSGMDTVGFRIPKHPVTLDLIR 128 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 YG PL PSAN SG++S T+ + I+ +E ++ + G +STI+++ E K Sbjct: 129 KYG-PLIGPSANLSGKVSGTSFQQIVMD--FQEQVSGVEDDAALTGQDSTILDLSGE-KA 184 Query: 190 RILRPGGLEIETL 202 ILR G + E + Sbjct: 185 HILRQGAIAREDI 197 >gi|322385291|ref|ZP_08058936.1| Sua5/YciO/YrdC family protein [Streptococcus cristatus ATCC 51100] gi|321270550|gb|EFX53465.1| Sua5/YciO/YrdC family protein [Streptococcus cristatus ATCC 51100] Length = 196 Score = 89.0 bits (219), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 64/186 (34%), Positives = 100/186 (53%), Gaps = 8/186 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L AG + +PTETVYGL + N A+ R+YE+K+RP L +V+ + + + P Sbjct: 8 LAAGGAVVLPTETVYGLFAQALNEEAVERVYELKRRPRDKALNLNVASLEDIYAFSKNQP 67 Query: 79 LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136 L + + F PGPLT++L + + + ++T FR+P T LI YG PL Sbjct: 68 SYLEQVYQAFLPGPLTIILQ--ANDRVPAWINSGMETVGFRIPKHPVTLDLIRKYG-PLI 124 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SG+ S T+ + I+ +E+ + D + G +STI+++ E K RILR G Sbjct: 125 GPSANLSGKASGTSFQQIM-MDFQEEVSGVED-DTALTGQDSTILDLSGE-KARILRQGA 181 Query: 197 LEIETL 202 + E + Sbjct: 182 ITREDI 187 >gi|223946371|gb|ACN27269.1| unknown [Zea mays] Length = 275 Score = 89.0 bits (219), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 66/190 (34%), Positives = 93/190 (48%), Gaps = 4/190 (2%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 KA + ++ G IA+PT+T+YG A D+ + A+ R+YEIK R PL V D+S + + Sbjct: 75 KATDAINRGEVIAVPTDTIYGFACDACSAGAVNRIYEIKGRIQTRPLAICVGDVSDISRF 134 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYG 132 A VD L L PGP+T+VL + + L + RVP F + + G Sbjct: 135 ALVDHLPHGLLDSLLPGPVTIVLKRGENSILERSLNPGLDSIGVRVPDLDFIRSIARGTG 194 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIVNVQCEKKVRI 191 LA+ SAN SGQ S VK + + DGG+ G STIV++ +I Sbjct: 195 SALALTSANLSGQPSSVCVKDF--EGLWPHCSYVFDGGVLPSGRAGSTIVDLITPGVYKI 252 Query: 192 LRPGGLEIET 201 LR G ET Sbjct: 253 LRDGSSRKET 262 >gi|326431169|gb|EGD76739.1| yrdC domain-containing protein [Salpingoeca sp. ATCC 50818] Length = 388 Score = 89.0 bits (219), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 63/193 (32%), Positives = 102/193 (52%), Gaps = 10/193 (5%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A E L AG I +PT+T+YGLA +++ +RR+Y IK R + P+ V D++ + +A Sbjct: 104 AVETLRAGGVIGVPTDTIYGLACLAQSTQGVRRIYSIKGRSELKPIAICVHDVAAIGAYA 163 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGH 133 + + L + PGP+T+VL ++P + RVP F +KL++ G Sbjct: 164 ELS-VPERLLRALLPGPVTVVLPRKPA--LNPELNPHTSLIGVRVPDFPFVRKLVQALGE 220 Query: 134 PLAIPSANRSGQ---ISITNVKHILSS-SICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 PLA+ SANRSG+ IS + H+ + + I G S++G ST+V++ K Sbjct: 221 PLALTSANRSGEQSCISSSEFSHLWGELNAVYDAGTIETSGASRLG--STVVDLSRGKAY 278 Query: 190 RILRPGGLEIETL 202 +++R G E TL Sbjct: 279 QVIRGGSAEEATL 291 >gi|270308141|ref|YP_003330199.1| translation factor SUA5 [Dehalococcoides sp. VS] gi|270154033|gb|ACZ61871.1| translation factor SUA5 [Dehalococcoides sp. VS] Length = 213 Score = 89.0 bits (219), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 67/199 (33%), Positives = 100/199 (50%), Gaps = 7/199 (3%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 N + A L G + PT+TVY + +RN A+ R+++IK R L + D+S Sbjct: 12 NQITNAVRILKEGGVVIFPTDTVYAVGALARNTHAVNRVFDIKGRANTKGLPALIGDVSQ 71 Query: 70 VKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + A V P L+ LA +WPG LTLVL T +I T +T R+P ++ Sbjct: 72 INQVAKVFPELARKLAAEYWPGGLTLVLP--KTNNIPLELTGGNETVAIRIPNQPAVIEM 129 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ G P+ SAN SG S N S + + I+DGG G+ESTIV V Sbjct: 130 LKRIGEPITGTSANLSGCKSSLNAAE-ARSQLGDRVDFILDGGQVSGGVESTIVAVN-NN 187 Query: 188 KVRILRPGGL-EIETLKRA 205 +++I+R G + E + LK A Sbjct: 188 ELKIIRQGAIKEADILKTA 206 >gi|325689726|gb|EGD31730.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK115] Length = 196 Score = 89.0 bits (219), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 64/186 (34%), Positives = 100/186 (53%), Gaps = 8/186 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L AG + +PTETVYGL + N A+ R+YE+K+RP+ L +V+ + + + P Sbjct: 8 LAAGGAVVLPTETVYGLFAQALNEEAVERVYELKRRPSDKALNLNVASLEEIYNFSKNRP 67 Query: 79 LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136 L L + F PGPLT++L + + + ++T FR+P T LI YG PL Sbjct: 68 CYLDQLYQAFLPGPLTIILQ--ANDRVPAWINSGMETVGFRIPNHPVTLDLIRKYG-PLI 124 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SG+ S T+ + I+ +E+ + D G +STI+++ EK + ILR G Sbjct: 125 GPSANLSGKASGTSFQQIM-MDFQEEVSGVEDDDF-LTGQDSTILDLSGEKAL-ILRQGA 181 Query: 197 LEIETL 202 + E + Sbjct: 182 ITREDI 187 >gi|195336176|ref|XP_002034718.1| GM19771 [Drosophila sechellia] gi|194126688|gb|EDW48731.1| GM19771 [Drosophila sechellia] Length = 325 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 71/204 (34%), Positives = 106/204 (51%), Gaps = 19/204 (9%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 + ++ D AL+ A + L G IA+PT+TVYGLA D+ N TAI+RLYEIK R P+ Sbjct: 109 VCAVGDKAALQLARQCLLGGQVIALPTDTVYGLACDANNETAIQRLYEIKGRDEHKPVAI 168 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLD---LLSTTDIHPLSTANLKTACFRV 119 V +IS +++ LS L PGPLT+V++ LS ++P ST+ + R+ Sbjct: 169 CVHNISALRRFGQAAHLSDELLTRLLPGPLTIVIERTVQLSNRFLNP-STSKIG---IRI 224 Query: 120 P-CGFTKKLIETYG-HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-- 175 P F + L + PLA+ SANRS S V S+ ++ + D G +IG Sbjct: 225 PDFNFMRDLCGVWQEQPLALTSANRSSAPSSLQVSEF--RSLWPQLGAVFDAG--RIGLT 280 Query: 176 ----LESTIVNVQCEKKVRILRPG 195 L ST++++ I+R G Sbjct: 281 EERRLASTVIDLATPGYFEIVRAG 304 >gi|224368045|ref|YP_002602208.1| hypothetical protein HRM2_09310 [Desulfobacterium autotrophicum HRM2] gi|223690761|gb|ACN14044.1| conserved hypothetical protein [Desulfobacterium autotrophicum HRM2] Length = 224 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 62/189 (32%), Positives = 100/189 (52%), Gaps = 6/189 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +AC+ L AG + P + +YG+AVD+ NP AI R++ IK+RP NP++ ++D S Sbjct: 19 GDFISRACDILRAGGIVIFPAKCLYGIAVDAFNPEAISRVFGIKQRPRKNPILVLINDRS 78 Query: 69 MVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 ++ P + L FWPG +T+V + L + + TA+ R+P K Sbjct: 79 DLEGLVKKVPKTARILMDRFWPGDITIVFEALDR--LPGILTAHTGKIGIRMPQHPVAKA 136 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L G P+ SAN SG I+ ++ L + + LI+D G K G ST+V+V + Sbjct: 137 LTRGLGKPITGTSANLSGAEGISRIQD-LPPVLVDRVDLILDAGRLKGGKGSTVVDVTGQ 195 Query: 187 KKVRILRPG 195 +V +LR G Sbjct: 196 -QVLVLREG 203 >gi|195585167|ref|XP_002082361.1| GD25261 [Drosophila simulans] gi|194194370|gb|EDX07946.1| GD25261 [Drosophila simulans] Length = 248 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 67/201 (33%), Positives = 101/201 (50%), Gaps = 13/201 (6%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 + ++ D AL+ A + L G IA+PT+TVYGLA D+ N TAI+RLYEIK R P+ Sbjct: 32 VCAVGDEAALQLARQCLLGGQVIALPTDTVYGLACDANNETAIQRLYEIKGRDEHKPVAI 91 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 V +I +++ LS L PGPLT+V++ + L+ + K R+P Sbjct: 92 CVHNIEALRRFGQAAHLSDELLTRLLPGPLTIVIERTAQLSNRFLNPSTSKIG-IRIPDF 150 Query: 122 GFTKKLIETYG-HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG----- 175 F + L + PLA+ SANRS S V S+ ++ + D G +IG Sbjct: 151 NFMRDLCAVWQEQPLALTSANRSSAPSSLQVSEF--RSLWPQLGAVFDAG--RIGLTEER 206 Query: 176 -LESTIVNVQCEKKVRILRPG 195 L ST++++ I+R G Sbjct: 207 RLASTVIDLATPGYFEIVRAG 227 >gi|117926737|ref|YP_867354.1| translation factor SUA5 [Magnetococcus sp. MC-1] gi|117610493|gb|ABK45948.1| translation factor SUA5 [Magnetococcus sp. MC-1] Length = 211 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 67/207 (32%), Positives = 102/207 (49%), Gaps = 13/207 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD-I 67 S LR A + L+ G +A PTET+YGL VD NP A+RRL ++K R A LI V + + Sbjct: 10 SEQLRHAVQLLEGGGILAYPTETLYGLGVDPFNPQAVRRLLDLKGREAKKGLILLVPNSV 69 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 +++ ++ ++ L + FWP PLTLVL + + L T R + + Sbjct: 70 ALLPLVQPLEAVAQRLIEHFWPAPLTLVLP--AQAGLSSLLTGGTGLVAVRHSSSPYVQA 127 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKE----IPLIIDGGISKIGLESTIVN 182 L+ + PL SAN SG + V+H I E + +I+ G L ST+V Sbjct: 128 LMAHWQRPLVSTSANPSG----SQVQHWSPERIAAEWGGQVDMILAGPYDDGALASTVVK 183 Query: 183 VQCEKKVRILRPGGLEIETLKRAISVE 209 V + V +LR G + L++ I +E Sbjct: 184 VIAGRGV-VLREGAITCAQLQQIIPIE 209 >gi|194881657|ref|XP_001974938.1| GG20842 [Drosophila erecta] gi|190658125|gb|EDV55338.1| GG20842 [Drosophila erecta] Length = 251 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 68/198 (34%), Positives = 100/198 (50%), Gaps = 13/198 (6%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + D ALR A + L +G IA+PT+TVYGLA D+ N TAI+RLYEIK R P+ V Sbjct: 38 VGDEAALRLARQCLLSGQVIALPTDTVYGLACDANNETAIQRLYEIKGRDEHKPVAICVH 97 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFT 124 +I +++ LS L PGPLT+V++ + L+ + K R+P F Sbjct: 98 NIEALRRFGQAVHLSDELLTRLLPGPLTIVIERTAQLSNRFLNPSTSKIG-IRIPDFNFM 156 Query: 125 KKLIETYG-HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG------LE 177 + L + PLA+ SANRS S V S+ ++ + D G +IG L Sbjct: 157 RDLCAVWHEQPLALTSANRSSAPSSLQVSEF--RSLWPQLGAVFDAG--QIGLTEERRLA 212 Query: 178 STIVNVQCEKKVRILRPG 195 ST++++ I+R G Sbjct: 213 STVIDLATPGYFEIVRAG 230 >gi|327470057|gb|EGF15521.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK330] Length = 196 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 64/186 (34%), Positives = 100/186 (53%), Gaps = 8/186 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L AG + +PTETVYGL + N A+ R+YE+K+RP L +V+ + + + P Sbjct: 8 LAAGGAVVLPTETVYGLFAQALNQEAVERVYELKRRPRDKALNLNVASLEEIYAFSKNQP 67 Query: 79 LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136 L L + F PGPLT++L + + + ++T FR+P T LI YG PL Sbjct: 68 SYLKQLYQTFLPGPLTIILQ--ANDRVPTWINSGMETVGFRIPKHPVTLNLIRKYG-PLI 124 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SG+ S T+ + I+ +E+ + D + G +STI+++ EK + ILR G Sbjct: 125 GPSANLSGKASGTSFQQIM-MDFQEEVSGVEDDA-ALTGQDSTILDLSGEKAL-ILRQGA 181 Query: 197 LEIETL 202 + E + Sbjct: 182 ITREDI 187 >gi|57234410|ref|YP_181562.1| Sua5/YciO/YrdC/YwlC family protein [Dehalococcoides ethenogenes 195] gi|57224858|gb|AAW39915.1| Sua5/YciO/YrdC/YwlC family protein [Dehalococcoides ethenogenes 195] Length = 213 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 64/190 (33%), Positives = 97/190 (51%), Gaps = 8/190 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A L G + PT+TVY + + N A+RR+++IK R L + DIS + Sbjct: 14 IDQAVSILKRGGVVVFPTDTVYAVGALASNTQAVRRVFDIKGRANTKGLPALIGDISQIN 73 Query: 72 KHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKKLI 128 + A V PL+ LAK +WPG LTLV L TD PL T +T R+P +++ Sbjct: 74 QVAKVFPPLASKLAKEYWPGGLTLV---LPKTDNIPLELTGGNETVAIRIPNQPAVIEML 130 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 + G P+ SAN SG S N + + I+DGG G+ESTI+ V + Sbjct: 131 KRVGEPVTGTSANLSGCKSSLNAAE-AEKQLGDRVDFILDGGQVSGGVESTIIAVNPD-G 188 Query: 189 VRILRPGGLE 198 ++I+R G ++ Sbjct: 189 LKIIRQGAIK 198 >gi|262282283|ref|ZP_06060051.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus sp. 2_1_36FAA] gi|262261574|gb|EEY80272.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus sp. 2_1_36FAA] Length = 196 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 64/193 (33%), Positives = 101/193 (52%), Gaps = 8/193 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + K + L AG + +PTETVYGL + N A+ R+YE+K+RP L +V+ + + Sbjct: 1 MDKIEKTLAAGGAVVLPTETVYGLFAQALNEEAVERVYELKRRPRDKALNLNVASLEEIY 60 Query: 72 KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P L L + F PGPLT++L + + + + T FR+P T LI Sbjct: 61 AFSKNHPTYLDQLYQAFLPGPLTIILQ--ANDQVPTWINSGMDTVGFRIPKHPVTLDLIR 118 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 YG PL PSAN SG++S T+ + I+ +E ++ + G +STI+++ E K Sbjct: 119 KYG-PLIGPSANLSGKVSGTSFQQIVMD--FQEQVSGVEDDAALTGQDSTILDLSGE-KA 174 Query: 190 RILRPGGLEIETL 202 ILR G + E + Sbjct: 175 HILRQGAITREDI 187 >gi|139949035|ref|NP_001077336.1| yrdC domain-containing protein, mitochondrial [Danio rerio] gi|134025291|gb|AAI34956.1| Zgc:162301 protein [Danio rerio] Length = 235 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 64/182 (35%), Positives = 98/182 (53%), Gaps = 12/182 (6%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L AG +A+PT+T+YGLA ++N AIRR+Y+IK R PL V +I + K+ V Sbjct: 38 LKAGQVVAVPTDTIYGLACVAQNSEAIRRVYDIKGRNGDKPLAICVGEIHDIYKYCKVS- 96 Query: 79 LSLHLAKLFWPGPLTLVLDLLST--TDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPL 135 + L + PGP+TLVL+ +T D++P + K R+P F ++L + PL Sbjct: 97 VKDRLLRDLLPGPVTLVLERSATLNGDLNPFT----KLIGVRIPDHPFMRRLCQMCDTPL 152 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGG--ISKIGLESTIVNVQCEKKVRILR 193 A+ SAN S Q S + + +++DGG K L ST+V++ + RI+R Sbjct: 153 ALTSANVSTQSSTVAANEF--EDLWPRLAVVVDGGPIEDKSRLGSTVVDLSVCGRYRIIR 210 Query: 194 PG 195 PG Sbjct: 211 PG 212 >gi|85858566|ref|YP_460768.1| sua5/yciO/yrdC/ywlC family protein [Syntrophus aciditrophicus SB] gi|85721657|gb|ABC76600.1| sua5/yciO/yrdC/ywlC family protein [Syntrophus aciditrophicus SB] Length = 217 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 67/195 (34%), Positives = 98/195 (50%), Gaps = 7/195 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L+ E L G +A PTET YGL D+ N AI +++ IK R NP+ + D + Sbjct: 19 LQHVAENLRKGRVVAYPTETFYGLGADAGNERAIEKIFSIKGRQFNNPIPLIIGDRDELD 78 Query: 72 KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P + L +FWPGPLTLV ++ ++ P TAN R+ + L Sbjct: 79 SLVTAIPEAAQRLIHVFWPGPLTLVFR--ASKNVSPRLTANTGLIGIRISSHPIARSLAR 136 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 + G PL SAN SGQ T H ++ ++ I I+DGG ++ ST+VN+ + + Sbjct: 137 SLGAPLTATSANFSGQKESTTA-HEVARTLGSLIDGIVDGGQTRGNKGSTVVNIAVDPPL 195 Query: 190 RILRPGGL-EIETLK 203 ILR G + EIE K Sbjct: 196 -ILRVGVITEIEIRK 209 >gi|78707274|ref|NP_001027444.1| CG33786 [Drosophila melanogaster] gi|17946164|gb|AAL49123.1| RE55868p [Drosophila melanogaster] gi|71911685|gb|AAF57437.2| CG33786 [Drosophila melanogaster] gi|220948934|gb|ACL87010.1| CG33786-PA [synthetic construct] gi|220957748|gb|ACL91417.1| CG33786-PA [synthetic construct] gi|228480314|gb|ACQ41870.1| MIP03842p [Drosophila melanogaster] Length = 248 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 110/222 (49%), Gaps = 17/222 (7%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 + ++ D AL+ A + L G IA+PT+TVYGLA D+ N TAI++LYEIK R P+ Sbjct: 32 VCAVGDEAALQLARQCLLGGQVIALPTDTVYGLACDANNETAIQQLYEIKGRDEHKPVAI 91 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 V +I +++ LS L PGPLT+V++ S L+ + K R+P Sbjct: 92 CVHNIDALRRFGQAAHLSDELLTRLLPGPLTIVIERTSQLSNRFLNPSTSKIG-IRIPDF 150 Query: 122 GFTKKLIETYGH-PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG----- 175 F + L + PLA+ SANRS S V S+ ++ + D G +IG Sbjct: 151 NFMRDLCAVWQEKPLALTSANRSSAPSSLQVSEF--RSLWPQLGAVFDAG--RIGLTEER 206 Query: 176 -LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDE 216 L ST++++ I+R G LK +S+ E+ + E Sbjct: 207 RLASTVIDLATPGYYEIVRAG----VALKPTLSLMEEFGIRE 244 >gi|71027715|ref|XP_763501.1| hypothetical protein [Theileria parva strain Muguga] gi|68350454|gb|EAN31218.1| hypothetical protein, conserved [Theileria parva] Length = 454 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 67/185 (36%), Positives = 94/185 (50%), Gaps = 9/185 (4%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI-----SMVKKHASVDPL 79 IAIPTETVYGLA + +I R+++IK+RP +PLI HV ++ + + Sbjct: 85 IAIPTETVYGLAGNIHLDESILRIFKIKERPLDDPLIVHVHSFLYALRNLYNTNIVESFI 144 Query: 80 SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIP 138 L+LA+ F PGPLT+V + + L T R P T KL+E PLA P Sbjct: 145 VLYLARKFAPGPLTIVAR--RSQAVSALLTNGSDFIAVRCPNNQITLKLLEFSEIPLAAP 202 Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLE 198 SAN+ G IS T +H+ + E I+D G IG+ESTI+ V + PG E Sbjct: 203 SANKFGHISPTCPEHV-KNEFPNENLHILDDGNCSIGIESTIIKVYSDDNHYYYHPGHTE 261 Query: 199 IETLK 203 + + Sbjct: 262 LSNVN 266 >gi|324994442|gb|EGC26355.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK678] Length = 196 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 65/186 (34%), Positives = 99/186 (53%), Gaps = 8/186 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L AG + +PTETVYGL + N A+ R+YE+K+RP L +V+ I + + P Sbjct: 8 LVAGGAVVLPTETVYGLFAQALNEEAVERVYELKRRPRDKALNLNVASIEEIYAFSKNQP 67 Query: 79 LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136 L L + F PGPLT++L + + + ++T FR+P T LI YG PL Sbjct: 68 SYLKQLYQAFLPGPLTIILQ--ANDRVPAWINSGMETVGFRIPKHPVTLDLIRKYG-PLI 124 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SG+ S T+ + I+ +E+ + D G +STI+++ EK + ILR G Sbjct: 125 GPSANLSGKASGTSFQQIM-MDFQEEVSGVEDDAYL-TGQDSTILDLSGEKAL-ILRQGA 181 Query: 197 LEIETL 202 + E + Sbjct: 182 ITREDI 187 >gi|195429998|ref|XP_002063044.1| GK21591 [Drosophila willistoni] gi|194159129|gb|EDW74030.1| GK21591 [Drosophila willistoni] Length = 222 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 69/207 (33%), Positives = 103/207 (49%), Gaps = 9/207 (4%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 + S+ + AL A + L AG IA+PT+TVYGLA D+ N AI+RLYEIK R P+ Sbjct: 6 VCSVDEERALDLARQCLLAGQIIALPTDTVYGLACDANNEQAIQRLYEIKGRDEHKPVAI 65 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 V +I ++++ D L L PGPLT+V++ +PL + R+P Sbjct: 66 CVHNIKALRRYGQADHLGDELLTRLLPGPLTIVIERAPALS-NPLLNPSTSKIGIRIPDF 124 Query: 122 GFTKKLIETY-GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG----ISKIGL 176 F +KL + PLA+ SANRS + S V+ + ++ I D G + L Sbjct: 125 QFIRKLCGVWHEQPLALTSANRSSEPSSLQVEEF--RCLWPQLGGIFDAGPIGLTEERRL 182 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLK 203 ST++++ I+R G ET K Sbjct: 183 ASTVIDLAKPGSYTIVRAGVALKETRK 209 >gi|146318504|ref|YP_001198216.1| translation factor (SUA5) [Streptococcus suis 05ZYH33] gi|146320695|ref|YP_001200406.1| translation factor (SUA5) [Streptococcus suis 98HAH33] gi|145689310|gb|ABP89816.1| Putative translation factor (SUA5) [Streptococcus suis 05ZYH33] gi|145691501|gb|ABP92006.1| Putative translation factor (SUA5) [Streptococcus suis 98HAH33] gi|292558285|gb|ADE31286.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus suis GZ1] gi|319758068|gb|ADV70010.1| putative translation factor (SUA5) [Streptococcus suis JS14] Length = 202 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 71/208 (34%), Positives = 111/208 (53%), Gaps = 15/208 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDIS 68 + K L+ G + +PTETVYGL + N A+ R+Y++K+RP AMN + +++DI Sbjct: 3 MDKLRTILENGGAVILPTETVYGLFAQALNEDAVNRVYQLKQRPRDKAMNLNVSNLNDIY 62 Query: 69 MVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKK 126 ++ P L L F PGPLT++L + ++ + L T FR+P T + Sbjct: 63 FFSQNT---PFFLEKLYNRFMPGPLTIILK--ANDNVPFWVNSGLDTVGFRLPNHEQTLR 117 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LI G PL PSAN SG S I + ++P I D + G++STI+++ + Sbjct: 118 LISETG-PLIGPSANISGNESGKKFSDI-QAQFSVDLPGIEDDQ-ALTGIDSTILDLSGQ 174 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCV 214 K RILR G + E +++AI E+E+ V Sbjct: 175 -KARILRQGAISREEIQKAIP-EIEFEV 200 >gi|237737623|ref|ZP_04568104.1| SUA5 protein [Fusobacterium mortiferum ATCC 9817] gi|229419503|gb|EEO34550.1| SUA5 protein [Fusobacterium mortiferum ATCC 9817] Length = 212 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 66/194 (34%), Positives = 104/194 (53%), Gaps = 10/194 (5%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L AG I PT+TVYG+ + I+ +Y+ K+R +PLI VSD+ +++ A V+ Sbjct: 22 LKAGELIIYPTDTVYGIGGVISSEETIKNIYKAKERSFKSPLIVLVSDVKKIEEVAYVEE 81 Query: 79 LSLH-LAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGH 133 + + KL FWPG LT++L I + TA+ T R+P +K+I+ G Sbjct: 82 KNREAIEKLIAKFWPGGLTIILK--KKEWIPNIMTADGDTVGVRMPALNIAQKIIKAAGG 139 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 L SAN SG+ LS + + + +I+DGG S +G ESTI+++ K +ILR Sbjct: 140 LLPTTSANISGE-KTPRAYDELSDTFKERVDIIVDGGKSPLGTESTIIDMT--DKPKILR 196 Query: 194 PGGLEIETLKRAIS 207 G + IE +++ I Sbjct: 197 LGAISIEDIEKVIG 210 >gi|253751630|ref|YP_003024771.1| hypothetical protein SSUSC84_0755 [Streptococcus suis SC84] gi|253753532|ref|YP_003026673.1| hypothetical protein SSU0792 [Streptococcus suis P1/7] gi|253755643|ref|YP_003028783.1| hypothetical protein SSUBM407_1043 [Streptococcus suis BM407] gi|251815919|emb|CAZ51533.1| conserved hypothetical protein [Streptococcus suis SC84] gi|251818107|emb|CAZ55901.1| conserved hypothetical protein [Streptococcus suis BM407] gi|251819778|emb|CAR45685.1| conserved hypothetical protein [Streptococcus suis P1/7] Length = 200 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 70/201 (34%), Positives = 109/201 (54%), Gaps = 15/201 (7%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDISMVKKHAS 75 L+ G + +PTETVYGL + N A+ R+Y++K+RP AMN + +++DI ++ Sbjct: 8 LENGGAVILPTETVYGLFAQALNEDAVNRVYQLKQRPRDKAMNLNVSNLNDIYFFSQNT- 66 Query: 76 VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGH 133 P L L F PGPLT++L + ++ + L T FR+P T +LI G Sbjct: 67 --PFFLEKLYNRFMPGPLTIILK--ANDNVPFWVNSGLDTVGFRLPNHEQTLRLISETG- 121 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 PL PSAN SG S I + ++P I D + G++STI+++ + K RILR Sbjct: 122 PLIGPSANISGNESGKKFSDI-QAQFSVDLPGIEDDQ-ALTGIDSTILDLSGQ-KARILR 178 Query: 194 PGGLEIETLKRAISVELEYCV 214 G + E +++AI E+E+ V Sbjct: 179 QGAISREEIQKAIP-EIEFEV 198 >gi|159901360|ref|YP_001547607.1| Sua5/YciO/YrdC/YwlC family protein [Herpetosiphon aurantiacus ATCC 23779] gi|159894399|gb|ABX07479.1| Sua5/YciO/YrdC/YwlC family protein [Herpetosiphon aurantiacus ATCC 23779] Length = 207 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 60/173 (34%), Positives = 93/173 (53%), Gaps = 6/173 (3%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP-LSLHL 83 + PT+TVYG+ + + AI ++++ K RPA L ++D+ + K A P L+ L Sbjct: 26 LCFPTDTVYGIGGSALDEAAIAQVFQAKARPATVALPMLLADLDDLSKVARDIPDLAWRL 85 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANR 142 A+ +WPG LTLVL + + L TA T RVP G + LI +G P+A SAN Sbjct: 86 AEAWWPGGLTLVLP--AVAQLPQLLTAGKATIAVRVPNHGQLRNLIRQFGTPIAGTSANL 143 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 G+ + N ++ + +PL++DGG + STIV++ E+ ILR G Sbjct: 144 HGK-ATPNTAQAVAEQLAGRVPLVLDGGFAMGEQPSTIVDLSGEQPT-ILRQG 194 >gi|332360648|gb|EGJ38457.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK49] Length = 196 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 64/186 (34%), Positives = 99/186 (53%), Gaps = 8/186 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L AG + +PTETVYGL + N A+ R+YE+K+RP L +V+ I + + P Sbjct: 8 LVAGGAVVLPTETVYGLFAQALNEEAVERVYELKRRPRDKALNLNVASIEEIYAFSKNQP 67 Query: 79 LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136 L L + F PGPLT++L + + + ++T FR+P T LI YG PL Sbjct: 68 SYLKQLYQAFLPGPLTIILQ--ANDRVPTWINSGMETVGFRIPKHPVTLDLIRKYG-PLI 124 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SG+ S T+ + I+ +E ++ + G +STI+++ EK + ILR G Sbjct: 125 GPSANLSGKASGTSFQQIMMD--FQEQVSGVEDDTALTGQDSTILDLSGEKAL-ILRQGA 181 Query: 197 LEIETL 202 + E + Sbjct: 182 ITREDI 187 >gi|253581898|ref|ZP_04859122.1| SUA5 protein [Fusobacterium varium ATCC 27725] gi|251836247|gb|EES64784.1| SUA5 protein [Fusobacterium varium ATCC 27725] Length = 216 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 69/213 (32%), Positives = 111/213 (52%), Gaps = 11/213 (5%) Query: 1 MQIMSITDSNA-LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 M + T NA K + L G I PT+TVYG+ + +I ++Y+ K+R +P Sbjct: 1 MDRIKYTSLNADYNKIGKLLKEGNLIIYPTDTVYGVGGIIESDESIAKIYKAKERSFKSP 60 Query: 60 LICHVSDISMVKKHASVDPLSLH----LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115 LI VSD+S ++K A ++ + L K FWPG LT++L+ ++ + + KT Sbjct: 61 LIVLVSDVSKIEKIAYIEEKNREKIEKLIKEFWPGGLTIILN--KKDNVPDIMVSGGKTV 118 Query: 116 CFRVPCGFTK-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174 R+P T K+IE G L SAN SG+ + + LS + + +++DGG I Sbjct: 119 GVRMPNLDTALKIIEAAGGLLPTTSANISGETTPRSYDE-LSEEFKERVEILVDGGRCPI 177 Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAIS 207 G STI+++ K +ILR G + IE +++ I Sbjct: 178 GNASTIIDMS--DKPKILRTGAISIEDIEKIIG 208 >gi|325696483|gb|EGD38373.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK160] Length = 196 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 63/186 (33%), Positives = 98/186 (52%), Gaps = 8/186 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L AG + +PTETVYGL + N A+ R+YE+K+RP L +V + + + P Sbjct: 8 LAAGGAVVLPTETVYGLFAQALNQEAVERVYELKRRPRDKALNLNVGSLEEIYDFSKNQP 67 Query: 79 LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136 L L + F PGPLT++L + + + ++T FR+P T LI YG PL Sbjct: 68 CYLDQLYQAFLPGPLTIILQ--ANDRVPAWINSGMETVGFRIPNHPVTLDLIRKYG-PLI 124 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SG+ S T+ + I+ +E ++ + G +STI+++ EK + ILR G Sbjct: 125 GPSANLSGKASGTSFQQIMMD--FQEQVSGVEDDAALTGQDSTILDLSGEKAL-ILRQGA 181 Query: 197 LEIETL 202 + E + Sbjct: 182 ITREDI 187 >gi|297793617|ref|XP_002864693.1| hypothetical protein ARALYDRAFT_358267 [Arabidopsis lyrata subsp. lyrata] gi|297310528|gb|EFH40952.1| hypothetical protein ARALYDRAFT_358267 [Arabidopsis lyrata subsp. lyrata] Length = 284 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 67/201 (33%), Positives = 105/201 (52%), Gaps = 9/201 (4%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 ++A E + + IA+PT+T+YG A D+ + A+ R+YEIK R +PL V D+ +K+ Sbjct: 77 QEAIEAIKSEKVIAVPTDTLYGFACDACSLEAVNRIYEIKGRKLTSPLAICVGDVLDIKR 136 Query: 73 HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETY 131 A+ + L L PGP+T+VL ++ + + T RVP C F +++ Sbjct: 137 VATTNHLPHGLLDSLLPGPVTIVLQRGESSILEKSLNPGIGTIGVRVPDCEFIREVSRGS 196 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIVNVQCEKKVR 190 G LA+ SAN SG S VK ++ + + DGG+ G STIV++ K + Sbjct: 197 GSVLALTSANLSGDRSSVCVKDF--ENLWQHCAYVYDGGLLPSGRAGSTIVDLTKAGKYK 254 Query: 191 ILRPGGLEIETLKRAISVELE 211 I+RPG + K+A V LE Sbjct: 255 IIRPG-----SAKQATVVILE 270 >gi|302802275|ref|XP_002982893.1| hypothetical protein SELMODRAFT_234090 [Selaginella moellendorffii] gi|300149483|gb|EFJ16138.1| hypothetical protein SELMODRAFT_234090 [Selaginella moellendorffii] Length = 201 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 63/196 (32%), Positives = 102/196 (52%), Gaps = 5/196 (2%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +I + T N +R A L G I++PT+T+YGLA D+ + A+ R+YEIK R A +PL Sbjct: 8 KIWAATQEN-VRHAIAALRHGDVISVPTDTLYGLAADACSRVALERIYEIKGRNAGSPLA 66 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120 V+D+ +K++A +D L L PGP+TLVL+ +++ L + R+P Sbjct: 67 VCVADVPDLKRYARIDHLPDALLHDLLPGPVTLVLNRGDKSELEKSLNPGLLSIGIRIPD 126 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG-ISKIGLEST 179 F + + + LA+ SAN S + S V+ + + + D G +S ST Sbjct: 127 SDFIRSVARAFDGALALTSANTSSKPSSICVEEF--EHLWPQCAAVFDAGELSAGRAGST 184 Query: 180 IVNVQCEKKVRILRPG 195 IV++ E ++LR G Sbjct: 185 IVDLTAEASFKVLRAG 200 >gi|324992931|gb|EGC24851.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK405] gi|325687439|gb|EGD29460.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK72] gi|327462227|gb|EGF08554.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK1] gi|327489582|gb|EGF21374.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK1058] Length = 196 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 67/194 (34%), Positives = 103/194 (53%), Gaps = 10/194 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + K + L AG + +PTETVYGL + N A+ R+YE+K+RP L +V+ + + Sbjct: 1 MDKIEKTLAAGGAVVLPTETVYGLFAQALNQEAVERVYELKRRPRDKALNLNVASLEEIY 60 Query: 72 KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKKLI 128 + P L L + F PGPLT++ L D P+ + ++T FR+P T LI Sbjct: 61 AFSKNPPSYLDQLYQAFLPGPLTII---LQANDQVPVWINSGMETVGFRIPKHPVTLDLI 117 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 YG PL PSAN SG+ S T+ + I+ +E ++ + G +STI+++ E K Sbjct: 118 RKYG-PLIGPSANLSGKASGTSFQQIMMD--FQEQVSGVEDDPALTGQDSTILDLSGE-K 173 Query: 189 VRILRPGGLEIETL 202 RILR G + E + Sbjct: 174 ARILRQGAITREDI 187 >gi|302023745|ref|ZP_07248956.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus suis 05HAS68] gi|330832778|ref|YP_004401603.1| putative translation factor (SUA5) [Streptococcus suis ST3] gi|329307001|gb|AEB81417.1| putative translation factor (SUA5) [Streptococcus suis ST3] Length = 202 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 70/201 (34%), Positives = 109/201 (54%), Gaps = 15/201 (7%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDISMVKKHAS 75 L+ G + +PTETVYGL + N A+ R+Y++K+RP AMN + +++DI ++ Sbjct: 10 LENGGAVILPTETVYGLFAQALNEDAVNRVYQLKQRPRDKAMNLNVSNLNDIYFFSQNT- 68 Query: 76 VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGH 133 P L L F PGPLT++L + ++ + L T FR+P T +LI G Sbjct: 69 --PFFLEKLYNRFMPGPLTIILK--ANENVPFWVNSGLDTVGFRLPNHEQTLRLISETG- 123 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 PL PSAN SG S I + ++P I D + G++STI+++ + K RILR Sbjct: 124 PLIGPSANISGNESGKKFSDI-QAQFSVDLPGIEDDQ-ALTGIDSTILDLSGQ-KARILR 180 Query: 194 PGGLEIETLKRAISVELEYCV 214 G + E +++AI E+E+ V Sbjct: 181 QGAISREEIQKAIP-EIEFEV 200 >gi|114050899|ref|NP_001040163.1| ischemia/reperfusion inducible protein [Bombyx mori] gi|87248253|gb|ABD36179.1| ischemia/reperfusion inducible protein [Bombyx mori] Length = 274 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 61/199 (30%), Positives = 100/199 (50%), Gaps = 9/199 (4%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 ++S D A +A E L G IA+PT+T+YGLA + P AI++LY IK R A+ P+ Sbjct: 46 VISCVDFTASLRAAECLAKGQVIAVPTDTIYGLACSANCPLAIKKLYSIKGREAVKPVAI 105 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 V+ ++ ++K +S L PGP+T+VL D +P + R+P Sbjct: 106 CVTSVADLRKWGEASHISDKLLDSLLPGPVTVVLQKTKHLD-NPFLNPSTTKIGIRIPKH 164 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE---- 177 F + + + P+A+ SAN S + S ++K + + I DGG+ GLE Sbjct: 165 DFMNTVTKIFDMPVALTSANFSNEPSTLSIKEF--EHLYPHLAAIFDGGLLSQGLEQNRT 222 Query: 178 -STIVNVQCEKKVRILRPG 195 ST++++ +I+R G Sbjct: 223 GSTVIDLSKNGLYKIIRKG 241 >gi|223932124|ref|ZP_03624128.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus suis 89/1591] gi|223899105|gb|EEF65462.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus suis 89/1591] Length = 200 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 70/201 (34%), Positives = 109/201 (54%), Gaps = 15/201 (7%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDISMVKKHAS 75 L+ G + +PTETVYGL + N A+ R+Y++K+RP AMN + +++DI ++ Sbjct: 8 LENGGAVILPTETVYGLFAQALNEDAVNRVYQLKQRPRDKAMNLNVSNLNDIYFFSQNT- 66 Query: 76 VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGH 133 P L L F PGPLT++L + ++ + L T FR+P T +LI G Sbjct: 67 --PFFLEKLYNRFMPGPLTIILK--ANENVPFWVNSGLDTVGFRLPNHEQTLRLISETG- 121 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 PL PSAN SG S I + ++P I D + G++STI+++ + K RILR Sbjct: 122 PLIGPSANISGNESGKKFSDI-QAQFSVDLPGIEDDQ-ALTGIDSTILDLSGQ-KARILR 178 Query: 194 PGGLEIETLKRAISVELEYCV 214 G + E +++AI E+E+ V Sbjct: 179 QGAISREEIQKAIP-EIEFEV 198 >gi|299137093|ref|ZP_07030276.1| Sua5/YciO/YrdC/YwlC family protein [Acidobacterium sp. MP5ACTX8] gi|298601608|gb|EFI57763.1| Sua5/YciO/YrdC/YwlC family protein [Acidobacterium sp. MP5ACTX8] Length = 243 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 61/203 (30%), Positives = 102/203 (50%), Gaps = 6/203 (2%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 +S + + + L++G +A+PT+T YGLAVD N A+ R+Y++K R PL ++D+ Sbjct: 43 ESAHIDRVVQHLNSGEVVALPTDTFYGLAVDPVNLRAVDRIYDLKSRARHKPLSLLIADV 102 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125 + + A +D LA+ FWPGPLT+++ S + TAN RVP + Sbjct: 103 AQAYELARGIDTAFDRLAERFWPGPLTIIVKAGSKLPLR--VTANTGNVALRVPEAPICR 160 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ- 184 ++ G P+ SAN G + + + +IPLI+DGG + + +TIV++ Sbjct: 161 AVVAKLGLPITATSANLRG-LPECSYAGCVRDQFGDKIPLIVDGGPTSRSMATTIVDLSG 219 Query: 185 CEKKVRILRPGGLEIETLKRAIS 207 ILR G + + A+ Sbjct: 220 GGNSWMILREGAIPTHEIALALQ 242 >gi|195486789|ref|XP_002091655.1| GE13782 [Drosophila yakuba] gi|194177756|gb|EDW91367.1| GE13782 [Drosophila yakuba] Length = 251 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 114/222 (51%), Gaps = 23/222 (10%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + D AL+ A + L +G IA+PT+TVYGLA D+ N TAI+RLYEIK R P+ V Sbjct: 38 VGDEAALQLARQCLLSGQVIALPTDTVYGLACDANNETAIQRLYEIKGRDEHKPVAICVH 97 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLD---LLSTTDIHPLSTANLKTACFRVP-C 121 +I+ +++ LS L PGPLT+V++ LS ++P ST+ + R+P Sbjct: 98 NIAALRRFGQAAHLSDELLTRLLPGPLTIVIERTAQLSNRFLNP-STSKIG---IRIPDF 153 Query: 122 GFTKKLIETYG-HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG----- 175 F + L + PLA+ SANRS S V S+ ++ + D G +IG Sbjct: 154 NFIRDLCAVWHEQPLALTSANRSSAPSSLQVVEF--RSLWPQLGAVFDAG--QIGLTEER 209 Query: 176 -LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDE 216 L ST++++ I+R G LK +S+ E+ + E Sbjct: 210 RLASTVIDLATPSYFEIVRAG----VALKPTLSLMEEFGIRE 247 >gi|320106655|ref|YP_004182245.1| Sua5/YciO/YrdC/YwlC family protein [Terriglobus saanensis SP1PR4] gi|319925176|gb|ADV82251.1| Sua5/YciO/YrdC/YwlC family protein [Terriglobus saanensis SP1PR4] Length = 214 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 62/192 (32%), Positives = 98/192 (51%), Gaps = 6/192 (3%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVD 77 L++G+ AIPT+T YGLAVD N A+ ++YE+K R PL ++D + + A VD Sbjct: 25 LESGMVAAIPTDTFYGLAVDPVNLRAVEQIYELKGRAKHKPLSLLIADTAHAYELARDVD 84 Query: 78 PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLA 136 LA+ FWPGPLT+++ S + TA+ RVP + +++ G P+ Sbjct: 85 TAFDKLAEKFWPGPLTIIVKAGSRLPLR--VTAHTGNVALRVPEAAIPRAIVKKLGLPIT 142 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ-CEKKVRILRPG 195 SAN G + N + + +IPLI+DGG + + +TIV++ ILR G Sbjct: 143 ATSANLRG-LPECNYAACVRDQLGGQIPLIVDGGPTARSIATTIVDLSGGGNSWMILREG 201 Query: 196 GLEIETLKRAIS 207 + + A+ Sbjct: 202 AIPTHEIALALQ 213 >gi|195029409|ref|XP_001987565.1| GH19895 [Drosophila grimshawi] gi|193903565|gb|EDW02432.1| GH19895 [Drosophila grimshawi] Length = 250 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 72/221 (32%), Positives = 114/221 (51%), Gaps = 23/221 (10%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 + ++ NAL+ A + L G IA+PT+TVYGLA D+ N AI+RLYEIK R A P+ Sbjct: 31 VYAVDALNALKLAEQCLQLGKVIALPTDTVYGLACDANNEEAIQRLYEIKGRDAHKPVAI 90 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLD---LLSTTDIHPLSTANLKTACFRV 119 V+ I ++++ LS L PGPLT+V++ LS ++P +T R+ Sbjct: 91 CVNTIGALRRYGQASHLSDELLTRLLPGPLTIVIERTPQLSNRFLNPSTT----RIGIRI 146 Query: 120 P-CGFTKKLIETY-GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 P F + L T+ PLA+ SANRS S ++ ++ ++ + D G +IGL Sbjct: 147 PDFKFMRDLCGTWHEQPLALTSANRSSAPSSLHISEF--QALWPQLGAVFDAG--RIGLS 202 Query: 178 ------STIVNVQCEKKVRILRPGGLEIETLKRAISVELEY 212 ST++++ I+R G LK+ ++V E+ Sbjct: 203 EERRLASTVIDLVTPGCYDIVRSG----VALKQTLAVLHEF 239 >gi|302818656|ref|XP_002991001.1| hypothetical protein SELMODRAFT_132635 [Selaginella moellendorffii] gi|300141332|gb|EFJ08045.1| hypothetical protein SELMODRAFT_132635 [Selaginella moellendorffii] Length = 201 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 61/196 (31%), Positives = 103/196 (52%), Gaps = 5/196 (2%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 ++++ T N +R A L G I++PT+T+YGLA D+ + A+ R+Y+IK R A +PL Sbjct: 8 KVLAATQEN-VRHAIAALRRGDVISVPTDTLYGLAADACSRVAVERIYDIKGRNAGSPLA 66 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120 V+D+ +K++A +D L L PGP+TLVL+ +++ L + R+P Sbjct: 67 VCVADVPDLKRYARIDHLPDALLHDLLPGPVTLVLNRGDKSELEKSLNPGLLSIGIRIPD 126 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG-ISKIGLEST 179 F + + + LA+ SAN S + S V+ + + + D G +S ST Sbjct: 127 SDFIRSVARAFDGALALTSANTSSRPSSICVEEF--EHLWPQCAAVFDAGELSAGRAGST 184 Query: 180 IVNVQCEKKVRILRPG 195 IV++ E ++LR G Sbjct: 185 IVDLTAEASFKVLRAG 200 >gi|327460376|gb|EGF06713.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK1057] Length = 196 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 64/186 (34%), Positives = 99/186 (53%), Gaps = 8/186 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L AG + +PTETVYGL + N A+ R+YE+K+RP L +++ + + + P Sbjct: 8 LAAGGAVVLPTETVYGLFAQALNQEAVERVYELKRRPRDKALNLNMASLEEIYAFSKNQP 67 Query: 79 LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136 L L + F PGPLT++L + + + ++T FR+P T LI YG PL Sbjct: 68 TYLKQLYQAFLPGPLTIILH--ANDRVPTWINSGMETVGFRIPNHPVTLDLIRKYG-PLI 124 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SG+ S T+ + I+ EI + D + G +STI+++ EK + ILR G Sbjct: 125 GPSANLSGKASGTSFQQIM-MDFQGEISGVEDDA-TLTGQDSTILDLSGEKAI-ILRQGA 181 Query: 197 LEIETL 202 + E + Sbjct: 182 ITREDI 187 >gi|332366921|gb|EGJ44662.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK1059] Length = 196 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 66/187 (35%), Positives = 101/187 (54%), Gaps = 10/187 (5%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L AG + +PTETVYGL + N A+ R+YE+K+RP L +V+ + + + P Sbjct: 8 LAAGGAVVLPTETVYGLFAQALNEEAVERVYELKRRPRDKALNLNVASLEEIYAFSKNPP 67 Query: 79 LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKKLIETYGHPL 135 L L + F PGPLT++ L D P+ + ++T FR+P T LI YG PL Sbjct: 68 SYLDQLYQAFLPGPLTII---LQANDQVPVWINSGMETVGFRIPKHPVTLDLIRKYG-PL 123 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 PSAN SG+ S T+ + I+ +E+ + D + G +STI+++ EK + ILR G Sbjct: 124 IGPSANLSGKASGTSFQQIM-MDFQEEVSGVEDDA-ALTGQDSTILDLSGEKAL-ILRQG 180 Query: 196 GLEIETL 202 + E + Sbjct: 181 AITREDI 187 >gi|195119554|ref|XP_002004296.1| GI19851 [Drosophila mojavensis] gi|193909364|gb|EDW08231.1| GI19851 [Drosophila mojavensis] Length = 228 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 118/221 (53%), Gaps = 23/221 (10%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 I S NAL+ A + L G IA+PT+TVYGLA D+ N AI+RLYEIK R P+ Sbjct: 11 ICSAESLNALKLAEQCLQLGKVIALPTDTVYGLACDANNEQAIQRLYEIKGRDEHKPVAI 70 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLD---LLSTTDIHPLSTANLKTACFRV 119 V++I+ ++++ LS L PGPLT++++ LS ++P ST+ + R+ Sbjct: 71 CVNNITALRRYGQASHLSDELLTRLLPGPLTIIVEHTPHLSNRYLNP-STSKIG---IRI 126 Query: 120 P-CGFTKKLIETYG-HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-- 175 P F + L + PLA+ SANRS + S +++ I ++ ++ I D G +IG Sbjct: 127 PDFQFIRDLCARWHEQPLALTSANRSSEPS--SLEIIEFQALWPQLGAIFDAG--RIGQT 182 Query: 176 ----LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEY 212 L ST++++ I+R G LK+ +SV E+ Sbjct: 183 EERRLASTVIDLANPGCYEIVRAG----VALKQTLSVLHEF 219 >gi|124805452|ref|XP_001350444.1| conserved Plasmodium protein [Plasmodium falciparum 3D7] gi|23496566|gb|AAN36124.1| conserved Plasmodium protein [Plasmodium falciparum 3D7] Length = 556 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 101/188 (53%), Gaps = 14/188 (7%) Query: 5 SITDSNALRKAC-EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 I ++ LRK E ++ I IPTETVYGL +S + +++ ++ +K RP +P+I H Sbjct: 9 EIFENEDLRKKLKEHIEGDKLIGIPTETVYGLGGNSLSQRSLQNIFRMKNRPVSDPIISH 68 Query: 64 VSDISMVKKHASVDPLSLH-------LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 V +I + + + ++++ L+K FWPGPL+++ + + + TA + Sbjct: 69 VYNI--YQAYDQLYHINIYEKYIIYILSKYFWPGPLSIIAK--AKKEAPLILTAYTQFCA 124 Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R+P T+++I+ P+A PSAN+ IS TN H+ E LI D G +G Sbjct: 125 VRIPDNKITREIIKICNTPIAAPSANKFQHISPTNSLHVY-DEFKNEDLLIFDDGQCDVG 183 Query: 176 LESTIVNV 183 +EST++ + Sbjct: 184 IESTVLKI 191 >gi|69249629|ref|ZP_00605027.1| SUA5 [Enterococcus faecium DO] gi|68194108|gb|EAN08648.1| SUA5 [Enterococcus faecium DO] Length = 235 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 72/230 (31%), Positives = 114/230 (49%), Gaps = 20/230 (8%) Query: 109 TANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 T L TA FR+P T ++IE G PL PSAN SG+ S T H+ + +I II Sbjct: 2 TGGLSTAAFRIPDNKKTLEVIELSGVPLVGPSANTSGKPSPTTADHVY-HDLQGKITGII 60 Query: 168 DGGISKIGLESTIVNVQCEKKV-RILRPGGLEIETLKRAISVEL---EYCVDETSTPQSP 223 D G ++IG+EST++++ + ILRPG + E ++ I + ++ V E TP++P Sbjct: 61 DDGATRIGVESTVLDLSDPTAMPMILRPGAVTKEQIEAVIESPVAIDQHLVKENETPKAP 120 Query: 224 GMLKSHYAPRSQVRL-------RAIHVNPREALIRFGNVPIKNIENAI----ISLNLSKT 272 GM HY+P ++V + A+ + IR G + I + + ++ + Sbjct: 121 GMKYKHYSPDTRVLMVRDGDWSTAVQW-AKNKKIRAGVIASPEIADQVRTDTAAVYMYND 179 Query: 273 GKLKEAAFNLFNYMKIADDS--GASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ AA LF ++ D+ G I P GLG A NRL++AA Sbjct: 180 NSVEAAAKGLFAGLRGLDEPTLGLDLIFVQVYPETGLGNAYMNRLKKAAG 229 >gi|300709454|ref|YP_003735268.1| Sua5/YciO/YrdC/YwlC family protein [Halalkalicoccus jeotgali B3] gi|299123137|gb|ADJ13476.1| Sua5/YciO/YrdC/YwlC family protein [Halalkalicoccus jeotgali B3] Length = 192 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 64/192 (33%), Positives = 95/192 (49%), Gaps = 11/192 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +A + AG + PTETVYGL D+ +P A+ R+YE K R PL V D+ Sbjct: 3 LDRAVRAIRAGELVVYPTETVYGLGADALDPAAVERVYEAKGRARSKPLSMAVPDVEAAA 62 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130 +H S+ + F PGP+T+V + + ++ TA R+P L+E Sbjct: 63 RHTSLTDHERAFMREFLPGPVTVV--VAAGPEVPEALTAGRDRVGIRIPDQDLALSLLEE 120 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 P+ SAN SGQ S V L + + + ++DGG + G EST+V+V+ + R Sbjct: 121 VA-PITATSANASGQSSARRVAD-LDAGVRRAAACVLDGGETG-GTESTVVDVE---RGR 174 Query: 191 ILRPGGL--EIE 200 + R G L EIE Sbjct: 175 LHRRGALAEEIE 186 >gi|42573748|ref|NP_974970.1| yrdC protein-related [Arabidopsis thaliana] gi|332009969|gb|AED97352.1| DHBP synthase RibB-like alpha/beta domain-containing protein [Arabidopsis thaliana] Length = 288 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 64/192 (33%), Positives = 100/192 (52%), Gaps = 4/192 (2%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 ++A E + + IA+PT+T+YG A D+ + A+ R+YEIK R +PL V D+ +K+ Sbjct: 77 QEAIEAIKSEKVIAVPTDTLYGFACDACSLEAVSRIYEIKGRKLTSPLAICVGDVLDIKR 136 Query: 73 HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETY 131 A+ L L PGP+TLVL ++ + + T RVP C F +++ Sbjct: 137 VATTSHLPHGLLDSLLPGPVTLVLQRGESSILEKSLNPGIGTIGVRVPDCEFIREVSRGS 196 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIVNVQCEKKVR 190 G LA+ SAN SG S VK ++ + + DGG+ G STIV++ K + Sbjct: 197 GSVLALTSANLSGDRSSVCVKDF--ENLWQHCAYVYDGGLLPSGRAGSTIVDLTKVGKYK 254 Query: 191 ILRPGGLEIETL 202 I+RPG + T+ Sbjct: 255 IIRPGSAKQATV 266 >gi|288869983|ref|ZP_06112469.2| Sua5/YciO/YrdC/YwlC family protein [Clostridium hathewayi DSM 13479] gi|288868885|gb|EFD01184.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium hathewayi DSM 13479] Length = 162 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 53/137 (38%), Positives = 73/137 (53%), Gaps = 6/137 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L KA L G +A PTETVYGL ++ + A +++Y K RP+ NPLI H++D Sbjct: 28 DLKKLEKAAAILREGGLVAFPTETVYGLGANALDEEAAKKIYAAKGRPSDNPLIAHIADF 87 Query: 68 SMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCG-FT 124 S +K A + + L + FWPGPLT++ +D P +T L T R+P Sbjct: 88 SDLKPLVAEIPETAKKLMEAFWPGPLTMI---FPKSDAVPYGTTGGLDTVAVRMPSDPVA 144 Query: 125 KKLIETYGHPLAIPSAN 141 LI G P+A PSAN Sbjct: 145 MTLIRLSGVPVAAPSAN 161 >gi|326487440|dbj|BAJ89704.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 274 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 64/190 (33%), Positives = 93/190 (48%), Gaps = 4/190 (2%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 KA + ++ G IA+PT+T+YG A D+ + A+ R+YEIK R PL V+D+ + + Sbjct: 74 KAIDAINGGQVIAVPTDTIYGFACDACSAEAVNRIYEIKGRIHTRPLAICVADVPEISRF 133 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYG 132 A VD L L PGP+T+VL + + L + RVP F + + G Sbjct: 134 AMVDHLPHGLLHNLLPGPVTVVLKRGENSILERSLNPGLDSIGVRVPKLDFIRSIARGAG 193 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIVNVQCEKKVRI 191 LA+ SAN SG+ S VK + + DGG+ G STIV++ +I Sbjct: 194 SALALTSANLSGRPSSVGVKDF--GDLWPHCSYVFDGGMLPSGRAGSTIVDLITPGVYKI 251 Query: 192 LRPGGLEIET 201 LR G ET Sbjct: 252 LRDGSSREET 261 >gi|67623713|ref|XP_668139.1| hypothetical protein [Cryptosporidium hominis TU502] gi|54659320|gb|EAL37902.1| hypothetical protein Chro.10272 [Cryptosporidium hominis] Length = 389 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 80/268 (29%), Positives = 123/268 (45%), Gaps = 56/268 (20%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 N L +++ G +AIPTETVYGL ++ + ++I ++++IK RP NPLICHV Sbjct: 2 NNLSDYAKYILNGELVAIPTETVYGLGGNAYDRSSILKIFKIKGRPINNPLICHVHSFKF 61 Query: 70 VKKHASVDPLSLH-------LAKLFWPGPLTL-------VLDLLSTTDIHPLSTANLKTA 115 + + V LS L FWPGPLT+ ++D +S + + N + Sbjct: 62 AEDN--VFELSERTRVIYKILTDKFWPGPLTVISKKRRNIVDEVSVSGKVGVRCPNNQ-- 117 Query: 116 CFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHI---LSSSICKEIPL---IIDG 169 T L++ P+A PSANRSG IS T+ H+ S E+ + I+DG Sbjct: 118 -------LTLDLLKLSSVPIAAPSANRSGHISPTSPLHVSKEFDQSYMNEVGIKVWILDG 170 Query: 170 G-ISKIGLESTIVNVQCEKK-VRILRPGGLE----IETL-------KRAISVELEYCVDE 216 G +G+EST++ + + I R G + ETL + +++ Y Sbjct: 171 GECCSVGVESTVLEYYEDGNFISIFRCGKVTKNQIWETLIDNCRNNEWIKDIKISYFGSN 230 Query: 217 TSTPQ------------SPGMLKSHYAP 232 S+P SPGM HY+P Sbjct: 231 NSSPNRNYLSLHDTVAISPGMDIKHYSP 258 >gi|9759323|dbj|BAB09832.1| unnamed protein product [Arabidopsis thaliana] Length = 239 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 63/185 (34%), Positives = 97/185 (52%), Gaps = 4/185 (2%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 ++A E + + IA+PT+T+YG A D+ + A+ R+YEIK R +PL V D+ +K+ Sbjct: 28 QEAIEAIKSEKVIAVPTDTLYGFACDACSLEAVSRIYEIKGRKLTSPLAICVGDVLDIKR 87 Query: 73 HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETY 131 A+ L L PGP+TLVL ++ + + T RVP C F +++ Sbjct: 88 VATTSHLPHGLLDSLLPGPVTLVLQRGESSILEKSLNPGIGTIGVRVPDCEFIREVSRGS 147 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIVNVQCEKKVR 190 G LA+ SAN SG S VK ++ + + DGG+ G STIV++ K + Sbjct: 148 GSVLALTSANLSGDRSSVCVKDF--ENLWQHCAYVYDGGLLPSGRAGSTIVDLTKVGKYK 205 Query: 191 ILRPG 195 I+RPG Sbjct: 206 IIRPG 210 >gi|170061182|ref|XP_001866124.1| ischemia/reperfusion inducible protein [Culex quinquefasciatus] gi|167879525|gb|EDS42908.1| ischemia/reperfusion inducible protein [Culex quinquefasciatus] Length = 242 Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 62/220 (28%), Positives = 107/220 (48%), Gaps = 12/220 (5%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 ++ I +A+ +A L++G I +PT+TVYGLA + +P AI++LY+IK R P+ Sbjct: 25 HVIDIKSPDAILQAANLLESGKVIGLPTDTVYGLACSANDPAAIKKLYDIKGRICTKPIA 84 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120 V ++ V D L + L + PG +T+V+ D +P ++ RVP Sbjct: 85 ICVPEVKDVLYWGKADHLPMGLLQELLPGAVTIVVKKSHYLD-NPFLNPGVEKIGIRVPK 143 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE--- 177 F + + + + P+A+ SAN S Q S + ++ E+ + DGG E Sbjct: 144 FNFIRNVTKQFKAPMALTSANFSSQKSTLEITEF--KALWPELGAVFDGGQLGQSEEQRA 201 Query: 178 -STIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDE 216 ST++++ +K I+R G +KR I + Y +E Sbjct: 202 ASTVIDLSEPRKFEIIRTG----VAIKRTIELLKRYRFEE 237 >gi|326521554|dbj|BAK00353.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 214 Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 64/190 (33%), Positives = 93/190 (48%), Gaps = 4/190 (2%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 KA + ++ G IA+PT+T+YG A D+ + A+ R+YEIK R PL V+D+ + + Sbjct: 14 KAIDAINGGQVIAVPTDTIYGFACDACSAEAVNRIYEIKGRIHTRPLAICVADVPEISRF 73 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYG 132 A VD L L PGP+T+VL + + L + RVP F + + G Sbjct: 74 AMVDHLPHGLLHNLLPGPVTVVLKRGENSILERSLNPGLDSIGVRVPKLDFIRSIARGAG 133 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIVNVQCEKKVRI 191 LA+ SAN SG+ S VK + + DGG+ G STIV++ +I Sbjct: 134 SALALTSANLSGRPSSVGVKDF--GDLWPHCSYVFDGGMLPSGRAGSTIVDLITPGVYKI 191 Query: 192 LRPGGLEIET 201 LR G ET Sbjct: 192 LRDGSSREET 201 >gi|327474247|gb|EGF19654.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK408] Length = 196 Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 65/187 (34%), Positives = 100/187 (53%), Gaps = 10/187 (5%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L AG + +PTETVYGL + N A+ R+YE+K+RP L +V+ + + + P Sbjct: 8 LAAGGAVVLPTETVYGLFAQALNQEAVERVYELKRRPRDKALNLNVASLEEIYAFSKNQP 67 Query: 79 LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKKLIETYGHPL 135 L L + F PGPLT++ L D P+ + ++T FR+P T LI YG PL Sbjct: 68 SYLEQLYQAFLPGPLTII---LQANDRVPVWINSGMETVGFRIPKHPVTLDLIRKYG-PL 123 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 PSAN SG+ S T+ + I+ +E ++ + G +STI+++ EK + ILR G Sbjct: 124 IGPSANLSGKASGTSFQQIMMD--FQEEVSGVEEDAALTGKDSTILDLSGEKAL-ILRQG 180 Query: 196 GLEIETL 202 + E + Sbjct: 181 AITREDI 187 >gi|308799281|ref|XP_003074421.1| yrdC protein-related (ISS) [Ostreococcus tauri] gi|116000592|emb|CAL50272.1| yrdC protein-related (ISS) [Ostreococcus tauri] Length = 239 Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 60/192 (31%), Positives = 98/192 (51%), Gaps = 9/192 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +A+ A L G IA+PT+T+YG A + + A+RRLYEIK R A + V D+ Sbjct: 31 DAVALAVGALRRGGVIAVPTDTIYGFAARAEDGAAVRRLYEIKGRKATVAVAIAVGDVGD 90 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTAN--LKTACFRVPCG-FTKK 126 + ++ L L PGP+T++L ++ + S N + RVP F ++ Sbjct: 91 IGRYGECSHLREGLLGRILPGPVTVLLRRRASEEGGASSELNPGVDLIGIRVPASDFVRE 150 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILS-SSICKEIPLIIDGGISKIG-LESTIVNV- 183 + +G +A+ SANRSG+ S T+V+ C E + DGG+ + L STIV++ Sbjct: 151 VCRAHGSAIALTSANRSGETSTTSVEEFAELWDACAE---VFDGGVIETKRLGSTIVDLS 207 Query: 184 QCEKKVRILRPG 195 + + ++R G Sbjct: 208 STDGRYGVVREG 219 >gi|328946332|gb|EGG40476.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK1087] Length = 196 Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 64/179 (35%), Positives = 96/179 (53%), Gaps = 8/179 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L AG +PTETVYGL + N A+ R+YE+K+RP L +V+ + + + P Sbjct: 8 LAAGGAAVLPTETVYGLFAQALNQEAVERVYELKRRPRDKALNLNVASLEEIYAFSKNQP 67 Query: 79 LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136 L L + F PGPLT++L + + + ++T FR+P T LI YG PL Sbjct: 68 CYLEQLYQAFLPGPLTIILQ--ANDRVPAWINSGMETVGFRIPKHPVTLDLIRKYG-PLI 124 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 PSAN SG+ S T+ + I+ +E+ I D + G +STI+++ EK + ILR G Sbjct: 125 GPSANLSGKASGTSFQQIM-MDFQEEVSGIEDDA-ALTGQDSTILDLSGEKAL-ILRQG 180 >gi|323351593|ref|ZP_08087247.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis VMC66] gi|322122079|gb|EFX93805.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis VMC66] Length = 196 Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 64/193 (33%), Positives = 102/193 (52%), Gaps = 8/193 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + K + L A + +PTETVYGL + N A+ R+YE+K+RP L +V+ + + Sbjct: 1 MDKIEKILAASGAVVLPTETVYGLFAQALNEEAVERVYELKRRPRDKALNLNVASLEEIY 60 Query: 72 KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P L L + F PGPLT++L + + + ++T FR+P T LI Sbjct: 61 AFSKKQPSYLKQLYQAFLPGPLTIILQ--ANDRVPTWINSGMETVGFRIPKHPVTLDLIR 118 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 YG PL PSAN SG+ S T+ + I+ +E+ + D + G +STI+++ EK + Sbjct: 119 KYG-PLIGPSANLSGKASGTSFQQIM-MDFQEEVSGVEDDA-TLTGQDSTILDLSGEKAL 175 Query: 190 RILRPGGLEIETL 202 ILR G + E + Sbjct: 176 -ILRQGAITREDI 187 >gi|225708092|gb|ACO09892.1| Hypothetical protein ywlC [Osmerus mordax] Length = 268 Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 65/191 (34%), Positives = 98/191 (51%), Gaps = 16/191 (8%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L + L G +A+PT+T+YGLA ++N AI+R+YEIK R PL V +I + Sbjct: 64 LDATVQSLKEGQVVALPTDTIYGLACLAQNSDAIKRVYEIKGRNGQKPLAICVGEIQDIY 123 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLD--LLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 K+ V + L K PGP+TLVL + TD++P + R+P F ++L Sbjct: 124 KYCKVS-VKEELLKELLPGPVTLVLQRSTVLNTDLNPFT----PLVGVRIPNHPFMRRLC 178 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG----LESTIVNVQ 184 + PLA+ SAN S S V + + +++DGG IG L ST++++ Sbjct: 179 QLCAEPLALTSANISTHSSTVAVHEF--QDLWPRLAVVVDGG--PIGDHSRLGSTVIDLS 234 Query: 185 CEKKVRILRPG 195 K RI+RPG Sbjct: 235 VFGKYRIIRPG 245 >gi|66362214|ref|XP_628071.1| SUA5 like RNA binding domain containing protein [Cryptosporidium parvum Iowa II] gi|46227629|gb|EAK88564.1| SUA5 like RNA binding domain containing protein [Cryptosporidium parvum Iowa II] Length = 390 Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 76/262 (29%), Positives = 118/262 (45%), Gaps = 48/262 (18%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +++ G +AIPTETVYGL ++ + ++I ++++IK RP NPLICHV + Sbjct: 5 LSDYAKYILNGELVAIPTETVYGLGGNAYDRSSILKIFKIKGRPINNPLICHVHSFKFAE 64 Query: 72 KHASVDPLSLH-------LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC--- 121 +V LS L FWPGPLT++ + H + + V C Sbjct: 65 D--NVFELSERTRVIYKILTDKFWPGPLTVI-----SKKRHNIVDEVSVSGKVGVRCPNN 117 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHI---LSSSICKEIPL---IIDGG-ISKI 174 T L++ P+A PSANRSG IS T H+ S E+ + I+DGG + Sbjct: 118 QLTLDLLKLSSVPIAAPSANRSGHISPTTPLHVSKEFDQSYMNEVGIKVWILDGGECCSV 177 Query: 175 GLESTIVNVQCEKK-VRILRPGGLEIETLKRAI-----------SVELEYCVDETSTPQ- 221 G+EST++ + + I R G + + + + +++ Y S+P Sbjct: 178 GVESTVLEYYEDGNFISIFRCGKVTKKQIWETLIDNCRNNEWIKEIKISYFGSNNSSPNR 237 Query: 222 -----------SPGMLKSHYAP 232 SPGM HY+P Sbjct: 238 NYLSLHDTVAISPGMDIKHYSP 259 >gi|323508601|dbj|BAJ77194.1| cgd1_2420 [Cryptosporidium parvum] gi|323510581|dbj|BAJ78184.1| cgd1_2420 [Cryptosporidium parvum] Length = 389 Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 76/262 (29%), Positives = 118/262 (45%), Gaps = 48/262 (18%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +++ G +AIPTETVYGL ++ + ++I ++++IK RP NPLICHV + Sbjct: 4 LSDYAKYILNGELVAIPTETVYGLGGNAYDRSSILKIFKIKGRPINNPLICHVHSFKFAE 63 Query: 72 KHASVDPLSLH-------LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC--- 121 +V LS L FWPGPLT++ + H + + V C Sbjct: 64 D--NVFELSERTRVIYKILTDKFWPGPLTVI-----SKKRHNIVDEVSVSGKVGVRCPNN 116 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHI---LSSSICKEIPL---IIDGG-ISKI 174 T L++ P+A PSANRSG IS T H+ S E+ + I+DGG + Sbjct: 117 QLTLDLLKLSSVPIAAPSANRSGHISPTTPLHVSKEFDQSYMNEVGIKVWILDGGECCSV 176 Query: 175 GLESTIVNVQCEKK-VRILRPGGLEIETLKRAI-----------SVELEYCVDETSTPQ- 221 G+EST++ + + I R G + + + + +++ Y S+P Sbjct: 177 GVESTVLEYYEDGNFISIFRCGKVTKKQIWETLIDNCRNNEWIKEIKISYFGSNNSSPNR 236 Query: 222 -----------SPGMLKSHYAP 232 SPGM HY+P Sbjct: 237 NYLSLHDTVAISPGMDIKHYSP 258 >gi|195401705|ref|XP_002059453.1| GJ18829 [Drosophila virilis] gi|194142459|gb|EDW58865.1| GJ18829 [Drosophila virilis] Length = 259 Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 72/228 (31%), Positives = 114/228 (50%), Gaps = 21/228 (9%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 + ++ +AL+ A + L G I +PT+TVYGLA D+ N AI+RLYEIK R P+ Sbjct: 41 VCAVASLDALKLAEQCLHLGQVIGLPTDTVYGLACDANNEEAIQRLYEIKGRDEHKPVAI 100 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLD---LLSTTDIHPLSTANLKTACFRV 119 V++I+ ++++ LS L PGPLT++++ LS ++P +T R+ Sbjct: 101 CVNNIAALRRYGQASHLSDELLTRLLPGPLTIIVERSPQLSNRFLNPSTTK----IGIRI 156 Query: 120 P-CGFTKKLIETY-GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-- 175 P F + L T+ PLA+ SANRS S V S+ ++ + D G +IG Sbjct: 157 PDYKFMRDLCATWHEQPLALTSANRSSAPSSLQVSEF--QSLWPQLGAVFDAG--RIGQT 212 Query: 176 ----LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETST 219 L ST++++ I+R G +TL A+ E Y + T Sbjct: 213 EERRLASTVIDLAKPGSYSIVRAGVALKQTL--AVLHEFGYVKQDLDT 258 >gi|255071095|ref|XP_002507629.1| predicted protein [Micromonas sp. RCC299] gi|226522904|gb|ACO68887.1| predicted protein [Micromonas sp. RCC299] Length = 289 Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 57/181 (31%), Positives = 92/181 (50%), Gaps = 4/181 (2%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 IA+PT+T+YGLA + + +IRRLY K+R P+ VSD V+++A L+ L Sbjct: 99 IAVPTDTLYGLAAGAHSDKSIRRLYAAKRRSETVPIAICVSDAKDVERYADTKHLAEGLL 158 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRS 143 PGP+T++L S+ D+ N + R+P F + + YGH LA+ SAN+S Sbjct: 159 DELLPGPVTVLLSQKSSADLPSSLNPNSRLMGIRIPKSDFIRAVARQYGHALALTSANQS 218 Query: 144 GQISITNVKHILSSSICKEIPLIIDGG-ISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202 G S ++ + + + + DGG I + S+IV++ + R G +T Sbjct: 219 GSASTLDLNEF--TELWDDCAFVFDGGRIVSGRVGSSIVDLSLPGTFSVQRRGDKYEDTR 276 Query: 203 K 203 K Sbjct: 277 K 277 >gi|158521439|ref|YP_001529309.1| Sua5/YciO/YrdC/YwlC family protein [Desulfococcus oleovorans Hxd3] gi|158510265|gb|ABW67232.1| Sua5/YciO/YrdC/YwlC family protein [Desulfococcus oleovorans Hxd3] Length = 225 Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 61/200 (30%), Positives = 98/200 (49%), Gaps = 6/200 (3%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 DS + +AC L+AG + PT T+YGLA D+ N +A+ ++ +IK RP P++ + D Sbjct: 25 DSALIDRACGLLNAGGVLVFPTVTLYGLAADAWNRSAVEKVRQIKGRPDDKPILILIPDA 84 Query: 68 SMVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + + P L FWPG +TLV + + H +S + T RVP Sbjct: 85 AAAAGLVTTVPAGAEQLMDRFWPGNVTLVFEASARVPSHLISPSG--TIGLRVPSHPVAH 142 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 L+ G P+ SANRSG + V L I + +++D G+ G+ ST+V+V Sbjct: 143 ALVVRLGRPVTGTSANRSGSPACGRVAD-LDVDIVRLADMVLDAGVLGGGVGSTVVDVTM 201 Query: 186 EKKVRILRPGGLEIETLKRA 205 ++LR G + + +A Sbjct: 202 NPP-KVLREGTVRAADILKA 220 >gi|253574245|ref|ZP_04851587.1| Sua5/YciO/YrdC/YwlC family protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251846722|gb|EES74728.1| Sua5/YciO/YrdC/YwlC family protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 174 Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 44/102 (43%), Positives = 62/102 (60%), Gaps = 2/102 (1%) Query: 21 AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-VDPL 79 +G +A PTETVYGL D+RN A+ ++ K RP+ NPLI H++D+S + + V+ Sbjct: 65 SGGTVAFPTETVYGLGADARNTAAVEAIFAAKGRPSDNPLIVHIADVSQLDGLVTEVNET 124 Query: 80 SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 + L + FWPGPLTLVL +S + P TA L T R+P Sbjct: 125 ARRLMEAFWPGPLTLVLP-VSEGAVSPRVTAGLSTVGVRMPA 165 >gi|147669398|ref|YP_001214216.1| translation factor SUA5 [Dehalococcoides sp. BAV1] gi|146270346|gb|ABQ17338.1| translation factor SUA5 [Dehalococcoides sp. BAV1] Length = 213 Score = 85.9 bits (211), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 66/198 (33%), Positives = 101/198 (51%), Gaps = 9/198 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + L G + PT+TVY + +RN A+ R+++IK R L + DIS + Sbjct: 14 INRAVQVLKNGGVVIFPTDTVYAVGALARNTHAVNRVFDIKGRANTKGLPALIGDISQIH 73 Query: 72 KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVP-CGFTKKLI 128 + A + P L+ LA +WPG LTLV L TD PL T +T R+P +++ Sbjct: 74 QVAKIFPLLARKLAAEYWPGGLTLV---LPKTDNIPLELTGGNETVAIRIPNQAAVIEML 130 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 + P+ SAN SG S N + + I+DGG G+ESTIV V + + Sbjct: 131 KRVAEPVTGTSANLSGCKSSLNASE-AKIQLGDRVDFILDGGQVSGGVESTIVAVNND-E 188 Query: 189 VRILRPGGL-EIETLKRA 205 ++I+R G + E + LK A Sbjct: 189 LKIIRQGAIKESDILKTA 206 >gi|291408762|ref|XP_002720685.1| PREDICTED: ischemia/reperfusion inducible protein [Oryctolagus cuniculus] Length = 280 Score = 85.9 bits (211), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 64/196 (32%), Positives = 98/196 (50%), Gaps = 16/196 (8%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ALR A L AG +A+PT+T+YGLA + A+ +Y +K R PL + ++ Sbjct: 68 TEALRAAVAELRAGAVVAVPTDTLYGLACSASCSEALGAVYRLKGRSEAKPLAVCLGRVA 127 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVPC-GFTK 125 V ++ V + L K PGP+TLV++ D++P + R+P F + Sbjct: 128 DVYRYCHVR-VPEQLLKDLLPGPVTLVMERSEELNKDLNPFT----PLVGVRIPAHAFMQ 182 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG------LEST 179 L + +G PLA+ SAN S Q S NV+ + + L+IDGG G L ST Sbjct: 183 DLAQMFGGPLALTSANLSSQASSLNVQEF--QDLWPHLSLVIDGGPIGEGQSPECRLGST 240 Query: 180 IVNVQCEKKVRILRPG 195 +V++ K I+RPG Sbjct: 241 VVDLSVPGKFGIIRPG 256 >gi|124486054|ref|YP_001030670.1| translation factor SUA5 [Methanocorpusculum labreanum Z] gi|124363595|gb|ABN07403.1| translation factor SUA5 [Methanocorpusculum labreanum Z] Length = 198 Score = 85.9 bits (211), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 64/196 (32%), Positives = 98/196 (50%), Gaps = 20/196 (10%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 T+ + + KA L + PTETVYGL D+ + TA+ ++YE K+RP P+ VSD Sbjct: 5 TEESRIEKAVRVLSRDGLVVYPTETVYGLGADALSDTAVIKVYEAKQRPLGKPISVAVSD 64 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLST--TDIHPLSTANLKTACFRVPC-GF 123 I M+ A V P + F PGP+T+VL + + D+ + T R P Sbjct: 65 IEMIYGIADVSPFAERFISKFLPGPVTIVLPVKNCLPGDL----SGGTGTIGIRYPDHTL 120 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP--LIIDGGISKIGLESTIV 181 +LI + P+ SAN SG+IS +V + +P ++DGG+ G+ ST+V Sbjct: 121 ALELISMFDCPITATSANISGEISPVSVDQV-------NVPHDYLLDGGVLP-GIPSTVV 172 Query: 182 NVQCEKKVRILRPGGL 197 N++ I RPG + Sbjct: 173 NLETRN---IERPGAM 185 >gi|29840271|ref|NP_829377.1| Sua5/YciO/YrdC family protein [Chlamydophila caviae GPIC] gi|29834619|gb|AAP05255.1| Sua5/YciO/YrdC family protein [Chlamydophila caviae GPIC] Length = 285 Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 69/218 (31%), Positives = 114/218 (52%), Gaps = 26/218 (11%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 LR+A ++L G IA PT+TVYGLAV +P A ++Y +K R PL+ +V+ + ++ Sbjct: 10 LRQAADYLHQGKVIAFPTDTVYGLAVALNSPNAQEKIYSLKHRERGKPLVIYVNTLEDIE 69 Query: 72 KHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 K + PLS + LA+ F PGPLTL++D H S + + FR+P ++L Sbjct: 70 KFSGC-PLSSQAMKLAQEFLPGPLTLLVD-------HRNSRFSQEKLGFRIPSLPVVERL 121 Query: 128 IETYGHPLAIPSANRSGQISITNV-KHILSSSICKEIP---LIIDGGISKIGLESTIVNV 183 I+ G PL SAN I+N ++S + ++ P + I G GLEST+++ Sbjct: 122 IDLSG-PLLGTSAN------ISNFPPAVVSEEVVEDFPNEDIFIIPGQCSFGLESTVIST 174 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQ 221 ++I R G + + ++ + +E CV + + Q Sbjct: 175 ---DPLKIYREGIISRQAIEEIMGETIEPCVTQHAFSQ 209 >gi|156937167|ref|YP_001434963.1| translation factor SUA5 [Ignicoccus hospitalis KIN4/I] gi|156566151|gb|ABU81556.1| translation factor SUA5 [Ignicoccus hospitalis KIN4/I] Length = 202 Score = 85.5 bits (210), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 73/199 (36%), Positives = 107/199 (53%), Gaps = 15/199 (7%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 AL +A E L++G + IPTETVYG+A S+ A ++YE K+RP PL + + Sbjct: 14 RALIEAKEVLESGGLVIIPTETVYGIA--SKLEFA-EKIYEAKRRPRDKPLPVQ-TPLGR 69 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLI 128 ++ D + LAK FWPGPLT+V+ + + TA RVP F KL+ Sbjct: 70 HREVGEFDEAAEALAKAFWPGPLTIVVK--AKPWLPEAVTAGTGKVGVRVPAHPFALKLL 127 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E G PLA+ SAN SG S + + + E L+ID G + G ST+V V+ KK Sbjct: 128 ELVG-PLAVTSANLSGGKSPKS-----AEEVTVEADLLIDMGPVE-GTPSTVVEVEG-KK 179 Query: 189 VRILRPGGLEIETLKRAIS 207 V++LR G + E +++ +S Sbjct: 180 VKVLRRGPISEEEIQKVLS 198 >gi|156083739|ref|XP_001609353.1| translation factor Sua5 [Babesia bovis T2Bo] gi|154796604|gb|EDO05785.1| translation factor Sua5, putative [Babesia bovis] Length = 453 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 91/167 (54%), Gaps = 11/167 (6%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI-----SMVKKHASVDPL 79 IA+PTETVYGLA + ++ R++E+K RP +P+I HV S+ + Sbjct: 39 IALPTETVYGLAANGLCEKSVLRIFEVKGRPLTDPVILHVPSFEDALSSIFDADLYTACV 98 Query: 80 SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIP 138 L+L+ F PGPLT++ + I + +AN R P + +++ G PLA P Sbjct: 99 VLYLSLHFSPGPLTIITR--GRSGIPRVVSANSGYPAVRCPNHPDAQAILKHIGFPLAAP 156 Query: 139 SANRSGQISITNVKHILSSSICKEIPL-IIDGGISKIGLESTIVNVQ 184 SAN+ G IS T H++S K++ + ++DGG +GLEST+ ++ Sbjct: 157 SANKFGHISPTTADHVISE--FKDVHMYVVDGGSCSLGLESTVAKLE 201 >gi|222478840|ref|YP_002565077.1| Sua5/YciO/YrdC/YwlC family protein [Halorubrum lacusprofundi ATCC 49239] gi|222451742|gb|ACM56007.1| Sua5/YciO/YrdC/YwlC family protein [Halorubrum lacusprofundi ATCC 49239] Length = 199 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 60/177 (33%), Positives = 95/177 (53%), Gaps = 8/177 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D++ LR+A E + G + PTETVYGL D+ +PTA+ R++++K R NPL V + Sbjct: 4 DTDTLRRAAEAVADGDLVVYPTETVYGLGGDALDPTAVERVFDLKGRERSNPLSLGVPSV 63 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTK 125 ++ ++ A+ F PGP+T+V++ D P + TA RVP + Sbjct: 64 DAALRYTKPTEFAVAFARAFLPGPVTVVVE---RGDPVPDALTAGSDRVGVRVPDHPIAR 120 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 L+ G PL SAN SG+ S+T+ L I + + ++ID G + G EST+V+ Sbjct: 121 DLLRETG-PLTATSANVSGRGSVTHPDD-LDDRIREGVAVVIDDGETP-GTESTVVD 174 >gi|292654433|ref|YP_003534330.1| Sua5/YciO/YrdC/YwlC family protein [Haloferax volcanii DS2] gi|291371068|gb|ADE03295.1| Sua5/YciO/YrdC/YwlC family protein [Haloferax volcanii DS2] Length = 199 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/175 (31%), Positives = 87/175 (49%), Gaps = 5/175 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S+ +++A + G + PTETVYG+ D+ N A+ R+++IK R NPL D+ Sbjct: 2 SDDVQRAAAAIRRGEAVVYPTETVYGMGADATNADAVERVFDIKGRDRDNPLSAGFPDVD 61 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 + VD + F PGP+T+V++ + + A R+P L Sbjct: 62 AALELVEVDDREEAFMRRFLPGPVTVVVERRDS--LPDALVAGKDRIGVRIPDHELALAL 119 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 G P+ SANRSG SIT+ LS I + + +++DGG + G EST+V+ Sbjct: 120 FRASGTPVTATSANRSGTGSITHPSQ-LSDEIREAVAVVLDGGTTP-GTESTVVD 172 >gi|87306381|ref|ZP_01088528.1| probable low molecular weight protein-tyrosine-phosphatase ywlE [Blastopirellula marina DSM 3645] gi|87290560|gb|EAQ82447.1| probable low molecular weight protein-tyrosine-phosphatase ywlE [Blastopirellula marina DSM 3645] Length = 380 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 76/247 (30%), Positives = 111/247 (44%), Gaps = 21/247 (8%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + + +A + L G +A PTETVYG+AV + N AI RL E K RP P + Sbjct: 16 DVIHRAVQALAEGQVVAFPTETVYGVAVSALNSGAIDRLMEAKGRPKNQPFALAIRSKDE 75 Query: 70 VKKHA-SVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPLST----ANLKTACFRVPC 121 + + PL LA WPGP+TLVL D S P S A R+P Sbjct: 76 LADYVPQATPLMKRLATRCWPGPVTLVLPCDDPRSVVQSLPASVIPAIAPSGFVGLRIPS 135 Query: 122 -GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 ++ + PLA+ SANRSGQ + + ++ + L++D G + ST+ Sbjct: 136 HDLIQEAMRLLPGPLALTSANRSGQPDAVRGSEV-TEALGDALGLVLDCGKCRYSQPSTV 194 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCV------DETSTPQSPGMLKSHYAPRS 234 V V V ILR G + + LKR S YCV + +P + +++ H A R Sbjct: 195 VRV-VGNHVEILRSGVVSEKILKRLSS----YCVVFVCTGNTCRSPMAEVLMQKHAAERF 249 Query: 235 QVRLRAI 241 +L + Sbjct: 250 GCKLEEL 256 >gi|171741085|ref|ZP_02916892.1| hypothetical protein BIFDEN_00151 [Bifidobacterium dentium ATCC 27678] gi|283455537|ref|YP_003360101.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium dentium Bd1] gi|171276699|gb|EDT44360.1| hypothetical protein BIFDEN_00151 [Bifidobacterium dentium ATCC 27678] gi|283102171|gb|ADB09277.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium dentium Bd1] Length = 220 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 68/214 (31%), Positives = 109/214 (50%), Gaps = 10/214 (4%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 ++ +ITD + L +A E + G I IPT+TVYG+A D RN AIR++Y +K+RP PL Sbjct: 3 EVRTITDES-LAQAVEIIRDGGLIVIPTDTVYGVACDPRNVEAIRKIYMVKQRPKYKPLQ 61 Query: 62 CHVSDISMVKKHASVDPLSLH-LAKLFWPG---PLTLVLDLLSTTDIHPLSTANLKTACF 117 ++ I + P+ L+ LA +F PG P+ D S I T Sbjct: 62 VLLASIDGLDALRLDLPVPLNRLAAMFMPGAFSPIAEARDNCSLATIRRDPATGKTTQGV 121 Query: 118 RVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P T +++ G PLA SANRSG+ S V + ++ + L +DGG + + Sbjct: 122 RIPNSAATLRILRAVG-PLAATSANRSGEESAQTVDEAV-EALGDAVGLYLDGGATPGHV 179 Query: 177 ESTIVNVQCEKK--VRILRPGGLEIETLKRAISV 208 ST+V + + ILR G + +++A+++ Sbjct: 180 SSTVVAADPHGRDGISILREGVIREAVIRKALTL 213 >gi|222153025|ref|YP_002562202.1| hypothetical protein SUB0873 [Streptococcus uberis 0140J] gi|222113838|emb|CAR41937.1| conserved hypothetical protein [Streptococcus uberis 0140J] Length = 199 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 64/192 (33%), Positives = 100/192 (52%), Gaps = 8/192 (4%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 E L+ G + +PTETVYG+ + + TA+ +Y++KKRP + +V+D + + + Sbjct: 7 EILNNGGALVLPTETVYGIFAKALDETAVNHVYQLKKRPRDKAMNLNVADYQTILEFSKE 66 Query: 77 DPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHP 134 P L L + F PGPLT++L + + + T FR+P T LI+ G P Sbjct: 67 QPSYLKDLFEAFLPGPLTIILK--ANNKVPVWINSGKSTVGFRLPNHSLTADLIKKTG-P 123 Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194 L PSAN SG S IL++ + D I+ G +STIV++ E K +ILR Sbjct: 124 LIGPSANISGNESGKEFASILAAFDHEVAGYEDDQAIT--GQDSTIVDLSGE-KAKILRQ 180 Query: 195 GGLEIETLKRAI 206 G L ++ LK+ + Sbjct: 181 GALTVDELKKVV 192 >gi|297559306|ref|YP_003678280.1| Sua5/YciO/YrdC/YwlC family protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843754|gb|ADH65774.1| Sua5/YciO/YrdC/YwlC family protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 261 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 64/183 (34%), Positives = 95/183 (51%), Gaps = 10/183 (5%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-- 82 + +PT+TVYG+ D+ +PTA+ RL K R P V SM +A VD L H Sbjct: 30 VVLPTDTVYGIGTDAFSPTAVARLLATKGRGREMPPPVLVG--SMRAANALVDDLGNHGR 87 Query: 83 -LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140 L + FWPGPLTLV + T T R+P L++ G P+A+ SA Sbjct: 88 DLMEEFWPGPLTLVCTATPSLSWDLGDTKG--TVGVRMPMDPVALDLLKEVG-PMAVSSA 144 Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200 N+SGQ S T V+ + +++ + +DGG ++ + STIV++ R+LR G + IE Sbjct: 145 NKSGQPSATRVEEAIEQLGDEDVAVYLDGGETESRVSSTIVDLTYAVP-RVLRAGAISIE 203 Query: 201 TLK 203 L+ Sbjct: 204 QLR 206 >gi|306823415|ref|ZP_07456790.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium dentium ATCC 27679] gi|309802724|ref|ZP_07696828.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium dentium JCVIHMP022] gi|304553122|gb|EFM41034.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium dentium ATCC 27679] gi|308220788|gb|EFO77096.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium dentium JCVIHMP022] Length = 220 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 67/214 (31%), Positives = 109/214 (50%), Gaps = 10/214 (4%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 ++ +ITD + L +A E + G I IPT+TVYG+A D RN AIR++Y +K+RP PL Sbjct: 3 EVRTITDES-LAQAVEIIRDGGLIVIPTDTVYGVACDPRNVEAIRKIYMVKQRPKYKPLQ 61 Query: 62 CHVSDISMVKKHASVDPLSLH-LAKLFWPG---PLTLVLDLLSTTDIHPLSTANLKTACF 117 ++ I + P+ L+ LA +F PG P+ D S + T Sbjct: 62 VLLASIDGLDALRLDLPVPLNRLAAMFMPGAFSPIAEARDNCSLATVRRDPATGKTTQGV 121 Query: 118 RVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P T +++ G PLA SANRSG+ S V + ++ + L +DGG + + Sbjct: 122 RIPNSAATLRILRAVG-PLAATSANRSGEESAQTVDEAV-EALGDAVDLYLDGGATPGHV 179 Query: 177 ESTIVNVQCEKK--VRILRPGGLEIETLKRAISV 208 ST+V + + ILR G + +++A+++ Sbjct: 180 SSTVVAADPHGRDGISILREGVIREAVIRKALTL 213 >gi|223983284|ref|ZP_03633477.1| hypothetical protein HOLDEFILI_00757 [Holdemania filiformis DSM 12042] gi|223964777|gb|EEF69096.1| hypothetical protein HOLDEFILI_00757 [Holdemania filiformis DSM 12042] Length = 201 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 67/195 (34%), Positives = 98/195 (50%), Gaps = 12/195 (6%) Query: 16 CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75 E L+ G +A PT+TVYGLAV AI ++ E K+RP P VS + +++ A Sbjct: 15 VEILNRGGVVAFPTDTVYGLAVRYDLKEAILKMKEAKQRPETKPFPMMVSSKAQIERVAV 74 Query: 76 VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHP 134 D S L + PG LTLV +I L T T R+P F ++I G P Sbjct: 75 TDARSQKLIDQWMPGALTLVFK--KRPEIDELVTNGFPTIGIRMPDDDFVLEIINRVGVP 132 Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDG---GISKIGLESTIVNVQCEKKVRI 191 L +PSAN SGQ S T + +L K++ ID G S ST+ + + +++I Sbjct: 133 LLVPSANLSGQPSCTTSEEVL-----KQLDGRIDAVVLGESGASTASTVCDTTGD-ELKI 186 Query: 192 LRPGGLEIETLKRAI 206 LR G +++E L+ +I Sbjct: 187 LRQGPIKLEDLEASI 201 >gi|300087769|ref|YP_003758291.1| Sua5/YciO/YrdC/YwlC family protein [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527502|gb|ADJ25970.1| Sua5/YciO/YrdC/YwlC family protein [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 205 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 68/198 (34%), Positives = 102/198 (51%), Gaps = 7/198 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L+ A + L G +A PT+TVY LA + +AI R+++IK R L V+D ++ Sbjct: 10 LKTATQILVDGGIVAFPTDTVYCLAAAICHESAIERIFQIKGRQTTKALPVLVADSIQMR 69 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK--LIE 129 + A V ++ L + F PG LTL+L + L T T R+P G T LI+ Sbjct: 70 QVAEVSSVAEMLVRRFMPGALTLILP--KKPLVPDLVTGGKPTVAVRIP-GHTLALYLIK 126 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL SAN SG+ S+T + S I I I+DGG+ G+ESTIV++ Sbjct: 127 AVGSPLTGTSANLSGRGSVTTAMEV-ESQIGGRIDSIVDGGLCPGGIESTIVDLTGLTP- 184 Query: 190 RILRPGGLEIETLKRAIS 207 R++R G + E +++ I Sbjct: 185 RLVRSGAVPKEEIEKIIG 202 >gi|221632454|ref|YP_002521675.1| Sua5/YciO/YrdC/YwlC family protein [Thermomicrobium roseum DSM 5159] gi|221156754|gb|ACM05881.1| Sua5/YciO/YrdC/YwlC family protein [Thermomicrobium roseum DSM 5159] Length = 209 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 62/210 (29%), Positives = 102/210 (48%), Gaps = 10/210 (4%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+++ + ++ A + L G + PT+TVYG+ P A+ RLY K RP P+ Sbjct: 1 MKVLRADEPGSVEIAAQVLREGGLVVFPTDTVYGVGAVVDRPDAVARLYVAKGRPLDKPI 60 Query: 61 ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPLSTANLKTAC 116 ++D+ ++K A V P LA+ FWPG LT+V+ L + L+ Sbjct: 61 PVLIADLDQLEKLAREVTPEVQLLAQHFWPGALTIVVPAQPWLPREIVRETGAVGLRMPD 120 Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 V G +I G +A SANRSG+ V+ + ++ + L IDGG + G+ Sbjct: 121 HPVALG----IISGAGGAVATTSANRSGEREACTVEEAI-GALGDAVDLYIDGGRTPGGI 175 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAI 206 ST+V + + V +LR G L +E ++ + Sbjct: 176 PSTVVAFEGSRLV-VLRRGALPVEVIEEVL 204 >gi|329942862|ref|ZP_08291641.1| yrdC domain protein [Chlamydophila psittaci Cal10] gi|332287455|ref|YP_004422356.1| putative Sua5/YciO/yrdC family protein [Chlamydophila psittaci 6BC] gi|325507262|gb|ADZ18900.1| putative Sua5/YciO/yrdC family protein [Chlamydophila psittaci 6BC] gi|328815122|gb|EGF85111.1| yrdC domain protein [Chlamydophila psittaci Cal10] gi|328914703|gb|AEB55536.1| Sua5/YciO/YrdC/YwlC family protein [Chlamydophila psittaci 6BC] Length = 288 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 71/216 (32%), Positives = 110/216 (50%), Gaps = 19/216 (8%) Query: 4 MSITDSNA-LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 MS+TD + LR+A ++LD G IA PT+TVYGL V P A ++Y++K R L+ Sbjct: 1 MSVTDPDFFLRQAADYLDQGKVIAFPTDTVYGLGVALNYPNAEEKIYDLKHRDQGKSLVV 60 Query: 63 HVSDISMVKKHASVDPLSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 +V+ I ++K + LS H KL F PGPLTL++D H + + FR+ Sbjct: 61 YVNTIEDIEKFSGCT-LSTHALKLSQKFLPGPLTLLVD-------HKNPRFHQEKLGFRI 112 Query: 120 -PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 KLI+ G PL SAN S K +L C+E +I G S GLES Sbjct: 113 LSIPIVNKLIDLAG-PLLGTSANISNFPPAITSKEVL-EDFCQEDICVIPGCCS-YGLES 169 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV 214 T+++ ++I R G + + ++ + +++ C+ Sbjct: 170 TVISAD---PLKIYREGMIPHQVIEDVVGEKIDACL 202 >gi|218281197|ref|ZP_03487721.1| hypothetical protein EUBIFOR_00284 [Eubacterium biforme DSM 3989] gi|218217585|gb|EEC91123.1| hypothetical protein EUBIFOR_00284 [Eubacterium biforme DSM 3989] Length = 208 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 66/183 (36%), Positives = 97/183 (53%), Gaps = 15/183 (8%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 IA+PT+TVYG+ V N + RL K RP P+ VS++ +K+ A VD +A Sbjct: 32 IALPTDTVYGVGVKYGNLDDLERLKRAKHRPETKPIPMMVSNVEQMKQVALVDERIEKIA 91 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANRS 143 F PG LTLV+++ + D P T L T R+P F +I+ P+ + SAN+S Sbjct: 92 AKFLPGALTLVVNVKESVD--PAYTNGLSTIAIRIPDEKFILDVIDELNCPILVTSANQS 149 Query: 144 GQISITNVKHILSSSICKEIPLIIDG---GISKIGLESTIVNVQCEK-KVRILRPGGLEI 199 G+ + + S + +++P IDG G K STIV+ C K K+ ILRPG + + Sbjct: 150 GEKT-----ALTSDDVYEQLPK-IDGIVLGTCKALQASTIVD--CTKDKLVILRPGPISL 201 Query: 200 ETL 202 E L Sbjct: 202 EEL 204 >gi|309775205|ref|ZP_07670216.1| Sua5/YciO/YrdC/YwlC family protein [Erysipelotrichaceae bacterium 3_1_53] gi|308917024|gb|EFP62753.1| Sua5/YciO/YrdC/YwlC family protein [Erysipelotrichaceae bacterium 3_1_53] Length = 234 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 61/207 (29%), Positives = 102/207 (49%), Gaps = 20/207 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D +++ ++L G +A PT+TVYGL V N A++ L E K RP P+ V+++ Sbjct: 36 DKKDVKEVAQYLKEGKVVAFPTDTVYGLGVIYENEEALQALKESKGRPENKPIPTMVANV 95 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 +++ A ++ + LAK F PG T++L T + T T R+P F + Sbjct: 96 EQMQQIAVMNEAACKLAKAFMPGAFTMILKKKET--LPAYVTNGFPTVGIRMPNDPFVLQ 153 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI-------GLEST 179 LI G PL + SANRSG+ + + +L +DG I I L ST Sbjct: 154 LIAECGKPLLVTSANRSGEETGVRDEQVLKQ---------LDGRIDAIVLGEADGKLAST 204 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAI 206 IV++ ++ V ++R G + E +++ + Sbjct: 205 IVDMSTQEAV-LVREGPVTAEDIQKVL 230 >gi|325114035|emb|CBZ49593.1| sua5/YciO/YrdC/YwlC family protein, related [Neospora caninum Liverpool] Length = 791 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 60/178 (33%), Positives = 79/178 (44%), Gaps = 41/178 (23%) Query: 18 FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV------- 70 F GL +A PTETVYGL + P A R++ KKRPA +PLICHV + Sbjct: 149 FRRGGL-VAFPTETVYGLGAAATVPAACNRVFFCKKRPASDPLICHVVSVQQAFEQVFDL 207 Query: 71 ----KKHASVDPLSLH----------------------LAKLFWPGPLTLVL------DL 98 + ++ D L+ + LA FWPGPL++V D Sbjct: 208 DEEDSEQSARDRLTENPTAFPRKFTPQERRDLRLLIETLADAFWPGPLSIVAKGKILEDR 267 Query: 99 LSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHIL 155 T + TA + R P + LI G P+A PSANR G+IS T KH+L Sbjct: 268 KDGTGVALAVTAGTRLVAVRCPNHPYALSLIAAAGVPIAAPSANRFGRISPTRAKHVL 325 >gi|195154030|ref|XP_002017926.1| GL17434 [Drosophila persimilis] gi|194113722|gb|EDW35765.1| GL17434 [Drosophila persimilis] Length = 335 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 67/209 (32%), Positives = 103/209 (49%), Gaps = 13/209 (6%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 + + D AL+ A + L G IA+PT+TVYGLA D+ N AI+R+YEIK R P+ Sbjct: 115 VCQVEDRAALKVARQCLLGGQVIALPTDTVYGLACDANNEHAIQRMYEIKGRDEHKPVAI 174 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 V++I ++++ LS L PGPLT+V++ L+ K R+P Sbjct: 175 CVNNIEALRRYGQAAHLSDELLTRLLPGPLTIVIERTHELSNRFLNPTTSKIG-IRIPDF 233 Query: 122 GFTKKLIETYG-HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE--- 177 F + L + PLA+ SANRS S V S+ ++ + D G +IGL Sbjct: 234 QFIRALCSVWHEQPLALTSANRSSAPSSLQVTEF--HSLWPQLGAVFDAG--QIGLTEER 289 Query: 178 ---STIVNVQCEKKVRILRPGGLEIETLK 203 ST++++ I+R G +TL+ Sbjct: 290 RLASTVIDLATPGYYEIVRAGVALKQTLR 318 >gi|198458321|ref|XP_001360991.2| GA17233 [Drosophila pseudoobscura pseudoobscura] gi|198136301|gb|EAL25567.2| GA17233 [Drosophila pseudoobscura pseudoobscura] Length = 335 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 69/212 (32%), Positives = 109/212 (51%), Gaps = 19/212 (8%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 + + D AL+ A + L G IA+PT+TVYGLA D+ N AI+R+YEIK R P+ Sbjct: 115 VCQVEDRAALKVARQCLLGGQVIALPTDTVYGLACDANNEHAIQRMYEIKGRDEHKPVAI 174 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDL---LSTTDIHPLSTANLKTACFRV 119 V++I ++++ LS L PGPLT+V++ LS ++P +T+ + R+ Sbjct: 175 CVNNIEALRRYGQAAHLSDELLTRLLPGPLTIVIERTPELSNRFLNP-TTSKIG---IRI 230 Query: 120 P-CGFTKKLIETY-GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 P F + L + PLA+ SANRS S V S+ ++ + D G +IGL Sbjct: 231 PDFQFIRALCSVWHEQPLALTSANRSSAPSSLQVTEF--RSLWPQLGAVFDAG--QIGLT 286 Query: 178 ------STIVNVQCEKKVRILRPGGLEIETLK 203 ST++++ I+R G +TL+ Sbjct: 287 EERRLASTVIDLATPGYYEIVRAGVALKQTLR 318 >gi|225872631|ref|YP_002754088.1| Sua5/YciO/YrdC/YwlC family protein [Acidobacterium capsulatum ATCC 51196] gi|225793984|gb|ACO34074.1| Sua5/YciO/YrdC/YwlC family protein [Acidobacterium capsulatum ATCC 51196] Length = 210 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 60/180 (33%), Positives = 91/180 (50%), Gaps = 6/180 (3%) Query: 21 AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPL 79 +G + +PT+T YGLAVD N A+ +YE+K R PL +++ + A VD Sbjct: 23 SGKVVGMPTDTFYGLAVDPVNLRAVESIYELKSRQKHKPLSLLIANPGQAYELAREVDNH 82 Query: 80 SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIP 138 LA+ FWPGPLT+++ S + STAN RVP + ++E G P+ Sbjct: 83 FDRLAERFWPGPLTVIVKAGSRLPLR--STANTGNVALRVPDAEIPRAVVEALGLPITAT 140 Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC-EKKVRILRPGGL 197 SAN T + + + IPLI+DGG + L +TIV++ + +ILR G + Sbjct: 141 SANLQNAAECTYASCV-RDQLGERIPLIVDGGPTPRSLPTTIVDLSAGGGQWQILREGAI 199 >gi|296876520|ref|ZP_06900571.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus parasanguinis ATCC 15912] gi|296432513|gb|EFH18309.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus parasanguinis ATCC 15912] Length = 203 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 69/200 (34%), Positives = 103/200 (51%), Gaps = 9/200 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L+AG + +PTETVYG+ + + A+ +YE+K+RP L +V+D ++ ++ P Sbjct: 8 LEAGRAVILPTETVYGIFAKALDQEAVDYIYELKRRPRDKALNLNVADEKTIRIYSKNQP 67 Query: 79 LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136 L L F PGPLT++L + + + L T FR+P T +LI YG PL Sbjct: 68 SYLTKLIHSFLPGPLTIILQ--ANDKVPDWIHSGLDTVGFRIPAHPKTLELIRKYG-PLV 124 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SG S T + I+ S + +P I D G +STI+++ K RILR G Sbjct: 125 GPSANLSGHASGTKYEAIV-SEFDQVVPGIEDDDFL-TGQDSTILDISG-SKARILRQGS 181 Query: 197 LEIETLKRAISVELEYCVDE 216 + L + EL + DE Sbjct: 182 ITKTDLLAQVP-ELSFEEDE 200 >gi|148263967|ref|YP_001230673.1| Sua5/YciO/YrdC/YwlC family protein [Geobacter uraniireducens Rf4] gi|146397467|gb|ABQ26100.1| translation factor SUA5 [Geobacter uraniireducens Rf4] Length = 202 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 55/168 (32%), Positives = 82/168 (48%), Gaps = 4/168 (2%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 + E L+ G +A PT+T YG+ N I R+Y IK+R P +D+S + ++ Sbjct: 17 QVVEVLNKGGVVAYPTDTTYGIGCSIFNKRGIERIYSIKQREKKKPFSFICADLSDIARY 76 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132 A V + L K PGP T VLD +T+ + L KT R+P +++ G Sbjct: 77 AKVSNYAFKLMKRLLPGPYTFVLD--ATSVVPDLLMTKQKTVGIRIPANKICLAVVKQLG 134 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 HP+ SAN SG+ I + + S + K I L IDGGI + S + Sbjct: 135 HPIVTTSANLSGEEPIGDPFQV-ESYLGKLIDLTIDGGILSADVSSVV 181 >gi|322387786|ref|ZP_08061395.1| Sua5/YciO/YrdC family protein [Streptococcus infantis ATCC 700779] gi|321141653|gb|EFX37149.1| Sua5/YciO/YrdC family protein [Streptococcus infantis ATCC 700779] Length = 200 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 67/196 (34%), Positives = 104/196 (53%), Gaps = 14/196 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDIS 68 + K + L+ G + +PTETVYGL + + A+ +Y++K+RP A+N + H+ DI Sbjct: 2 MEKIKQELEKGGAVVLPTETVYGLFAKALDKKAVDHVYQLKRRPRDKALNLNVAHLDDIL 61 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 K+ P L F PGPLT++L+ + + ++L T FR+P T +L Sbjct: 62 NFSKNQP--PYLQKLVDSFLPGPLTIILE--ANDKVPYWVNSDLMTVGFRMPSHPITLEL 117 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ-CE 186 I +G PL PSAN SGQ S + + IL +E+ L I+ G +STI+++ C Sbjct: 118 IREFG-PLIGPSANISGQASGASFEEIL-KDFGQEV-LGIEDDAFLTGQDSTILDLTAC- 173 Query: 187 KKVRILRPGGLEIETL 202 K RILR G + E + Sbjct: 174 -KARILRQGSITREDI 188 >gi|222055790|ref|YP_002538152.1| Sua5/YciO/YrdC/YwlC family protein [Geobacter sp. FRC-32] gi|221565079|gb|ACM21051.1| Sua5/YciO/YrdC/YwlC family protein [Geobacter sp. FRC-32] Length = 202 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 56/173 (32%), Positives = 86/173 (49%), Gaps = 10/173 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +A E L+ G +A PT+T YG+ N I R+Y IK+R P +D+S + Sbjct: 15 LAQAVEILEKGGVVAYPTDTTYGIGCSIFNKKGIERIYAIKQRDRKKPFSFICADLSDIA 74 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP----CGFTKKL 127 +A V + + K F PGP T +LD +T+ + L KT R+P C KL Sbjct: 75 HYARVSNYAFKVMKRFLPGPYTFILD--ATSVVPDLCMTKQKTVGIRIPANKICLAITKL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 + GHP+ SAN SG+ I + + +++ K I L +DGG+ + S + Sbjct: 133 L---GHPIITTSANLSGEDPIGDPFQV-ENTLGKLIDLTVDGGVLTADVSSVV 181 >gi|220916607|ref|YP_002491911.1| Sua5/YciO/YrdC/YwlC family protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219954461|gb|ACL64845.1| Sua5/YciO/YrdC/YwlC family protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 212 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 5/188 (2%) Query: 21 AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80 AG + PTET YGL + + A+ RL K RP PL +D V + AS++ + Sbjct: 18 AGGIVVYPTETFYGLGALASDDAALVRLAAAKLRPEGKPLPLVAADREQVDRVASLEGAA 77 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPS 139 LA WPGPLTLVL + + TA T R+P + L G L S Sbjct: 78 ARLAGRLWPGPLTLVLP--ARPGLSEAITAGSGTVGVRIPGSEVARALARMAGGALVSTS 135 Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEI 199 AN SG V+ L +++ ++ ++D G + GL ST+V + E +R++RPG + I Sbjct: 136 ANLSGGPPPDRVEA-LDAALRGQVDHVLDAGPTPGGLPSTVVAIAGE-TLRVVRPGAVSI 193 Query: 200 ETLKRAIS 207 E + A+ Sbjct: 194 EQVTAALG 201 >gi|281491066|ref|YP_003353046.1| Sua5/YciO/YrdC/YwlC family RNA-binding protein [Lactococcus lactis subsp. lactis KF147] gi|281374824|gb|ADA64344.1| RNA-binding protein, Sua5/YciO/YrdC/YwlC family [Lactococcus lactis subsp. lactis KF147] gi|326406101|gb|ADZ63172.1| Sua5/YciO/YrdC/YwlC family RNA-binding protein [Lactococcus lactis subsp. lactis CV56] Length = 306 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 63/195 (32%), Positives = 104/195 (53%), Gaps = 8/195 (4%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 +A + L +G +PTETVYGL D+ N A+++LY +K RP L ++S + K+ Sbjct: 111 RAIKALKSGQLAILPTETVYGLFADAMNEEAVQKLYSVKGRPTEKALNMNISSFEDILKY 170 Query: 74 ASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETY 131 + P+ L + + F PGPLT++L+ ++ D+ T FR+P T+K+I+ Sbjct: 171 SINQPVYLQKIVEAFLPGPLTIILE--ASKDVPEWIHIGKSTVGFRMPNIAVTQKIIKEV 228 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 G L PSAN SG S + LS I + + + S GL++TI+++ EK ++ Sbjct: 229 G-VLVGPSANLSGSKSPSFFAD-LSPEILENAAVAVQDD-SIYGLDTTIIDLTQEKP-KL 284 Query: 192 LRPGGLEIETLKRAI 206 LR G + E L + + Sbjct: 285 LRQGAVTKEELLKKV 299 >gi|314927456|gb|EFS91287.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL044PA1] gi|328907542|gb|EGG27308.1| SUA5 related protein [Propionibacterium sp. P08] Length = 295 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 63/211 (29%), Positives = 108/211 (51%), Gaps = 10/211 (4%) Query: 3 IMSITDSNA----LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58 I+ + D +A L +A + + G I +PT+TVYG+ D+ NP A++RL K+R Sbjct: 53 ILDVADPDACEEALVQAADAIADGECIVLPTDTVYGIGADALNPLAVQRLLNAKERGRDM 112 Query: 59 PLICHVSD-ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 P VSD +++ + + LA+ +WPG LTL+L + + L N T Sbjct: 113 PPPVLVSDSVALPALCQHIPAGAKALAEKYWPGGLTLILRAQESLGMD-LGETN-GTLAV 170 Query: 118 RVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 RVP T++L+ G P+A+ SAN+SG + + + + E+ + +D G S++G Sbjct: 171 RVPDQDQTRELLRMTG-PMAVSSANKSGHPAALTAQEA-ADQLGVEVAVYLDAGPSRVGE 228 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAIS 207 STI++ +++R G L +E + S Sbjct: 229 SSTIIDFVSTADGKVVRQGALSLEAIHEVAS 259 >gi|313837663|gb|EFS75377.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL037PA2] gi|314972603|gb|EFT16700.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL037PA3] Length = 295 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 63/211 (29%), Positives = 108/211 (51%), Gaps = 10/211 (4%) Query: 3 IMSITDSNA----LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58 I+ + D +A L +A + + G I +PT+TVYG+ D+ NP A++RL K+R Sbjct: 53 ILDVADPDACEEALVQAADAIADGECIVLPTDTVYGIGADALNPLAVQRLLNAKERGRDM 112 Query: 59 PLICHVSD-ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 P VSD +++ + + LA+ +WPG LTL+L + + L N T Sbjct: 113 PPPVLVSDSVALPALCQHIPAGAKALAEKYWPGGLTLILRAQESLGMD-LGETN-GTLAV 170 Query: 118 RVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 RVP T++L+ G P+A+ SAN+SG + + + + E+ + +D G S++G Sbjct: 171 RVPDQDQTRELLRMTG-PMAVSSANKSGHPAALTAQEA-ADQLGVEVAVYLDAGPSRVGE 228 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAIS 207 STI++ +++R G L +E + S Sbjct: 229 SSTIIDFVSTADGKVVRQGALSLEAIHEVAS 259 >gi|95929617|ref|ZP_01312359.1| Sua5/YciO/YrdC/YwlC [Desulfuromonas acetoxidans DSM 684] gi|95134314|gb|EAT15971.1| Sua5/YciO/YrdC/YwlC [Desulfuromonas acetoxidans DSM 684] Length = 204 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 92/172 (53%), Gaps = 6/172 (3%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 IA PT+T+YG+ D N I+++Y++K+R P SD+S + ++A V ++ + Sbjct: 28 IAYPTDTIYGVGCDIFNKKGIKKIYQLKRRDVKKPFSFICSDLSEISRYAHVSNMAFKIM 87 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRS 143 K PGP T VLD ++ + L +T R+P T +++ GHPL SAN S Sbjct: 88 KRHLPGPYTFVLD--ASRVVPDLVMTKQRTVGIRMPDNAITLEIVRQLGHPLVTTSANIS 145 Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 G + + ++ K + +++DGG G ST+++++ + ++ +LR G Sbjct: 146 GDETYQD-PSLIHDDWGKHLDMVVDGG-RLYGDPSTVISLRND-QIEVLRQG 194 >gi|69249628|ref|ZP_00605026.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium DO] gi|68194107|gb|EAN08647.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium DO] Length = 120 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 38/92 (41%), Positives = 57/92 (61%), Gaps = 1/92 (1%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L++A E L G +A PTETVYGL ++ P A+++++ +K RP NPLI HV+ Sbjct: 7 DETELQEAAEALKEGELVAFPTETVYGLGANALLPNAVKKVFSVKGRPQDNPLIVHVASF 66 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDL 98 VK++ + P + + K FWPGPLTL+ + Sbjct: 67 EQVKEYVDNFHPAAEKIVKNFWPGPLTLIFKI 98 >gi|15672582|ref|NP_266756.1| hypothetical protein L189883 [Lactococcus lactis subsp. lactis Il1403] gi|12723495|gb|AAK04698.1|AE006293_4 conserved hypothetical protein [Lactococcus lactis subsp. lactis Il1403] Length = 270 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 63/195 (32%), Positives = 104/195 (53%), Gaps = 8/195 (4%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 +A + L +G +PTETVYGL D+ N A+++LY +K RP L ++S + K+ Sbjct: 75 RAIKALKSGQLAILPTETVYGLFADAMNEEAVQKLYSVKGRPTERALNMNISSFEDILKY 134 Query: 74 ASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETY 131 + P+ L + + F PGPLT++L+ ++ D+ T FR+P T+K+I+ Sbjct: 135 SINQPVYLQKIVEAFLPGPLTIILE--ASKDVPEWIHIGKSTVGFRMPNIAVTQKIIKEV 192 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 G L PSAN SG S + LS I + + + S GL++TI+++ EK ++ Sbjct: 193 GV-LVGPSANLSGSKSPSFFAD-LSPEILENAAVAVQDD-SIYGLDTTIIDLTQEKP-KL 248 Query: 192 LRPGGLEIETLKRAI 206 LR G + E L + + Sbjct: 249 LRQGAVTKEELLKKV 263 >gi|50842729|ref|YP_055956.1| SUA5 related protein [Propionibacterium acnes KPA171202] gi|50840331|gb|AAT82998.1| SUA5 related protein [Propionibacterium acnes KPA171202] Length = 307 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 61/195 (31%), Positives = 102/195 (52%), Gaps = 6/195 (3%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD-IS 68 +AL +A + + G I +PT+TVYG+ D+ N A++RL K+R P VSD ++ Sbjct: 76 DALEQAADAIADGECIVLPTDTVYGIGADALNALAVQRLLNAKERGRDMPPPVLVSDSVA 135 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + + + LA+ +WPG LTLVL + + L N T RVP T++L Sbjct: 136 LPALCQHIPAGAKALAEKYWPGGLTLVLRAQESLGMD-LGETN-GTLAVRVPDQDQTREL 193 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PLA+ SAN+SG + + + + E+ + +D G S++G STI++ Sbjct: 194 LRMTG-PLAVSSANKSGHPAALTAQEA-ADQLGVEVAVYLDAGPSRVGESSTIIDFVSTT 251 Query: 188 KVRILRPGGLEIETL 202 +++R G L +E + Sbjct: 252 DGKVVRQGALSLEAI 266 >gi|189233999|ref|XP_001811736.1| PREDICTED: similar to CG33786 CG33786-PA, partial [Tribolium castaneum] Length = 210 Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 64/203 (31%), Positives = 96/203 (47%), Gaps = 26/203 (12%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I D +A A + L +G IA+PT+TVYGLA D+ N T+I +LY IK R P+ + Sbjct: 7 IRDPHAEALAVDLLKSGRVIALPTDTVYGLACDATNITSINKLYSIKGRNEAKPVAICLG 66 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG--- 122 D+ VK A + L L + PGP+T++L ST D K+ F G Sbjct: 67 DVPQVKAWAKIGHLPQGLLESLLPGPVTVILTSASTLD---------KSLSFNAKVGIRI 117 Query: 123 ----FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE- 177 F + L G PLA+ SAN S + S + + ++ + DGG +GL+ Sbjct: 118 PDYHFIRALARGLGRPLALTSANLSNEPSSLTINEF--QDLWAQVGAVFDGG--NLGLDD 173 Query: 178 -----STIVNVQCEKKVRILRPG 195 ST++++ I+R G Sbjct: 174 SRRRASTVIDLSECGLFTIVRHG 196 >gi|11497366|ref|NP_051465.1| hypothetical protein BBU11 [Borrelia burgdorferi B31] gi|11497448|ref|NP_051542.1| hypothetical protein BB_T06 [Borrelia burgdorferi B31] gi|216264952|ref|ZP_03436942.1| putative Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi 156a] gi|6382387|gb|AAF07698.1|AE001582_6 conserved hypothetical protein [Borrelia burgdorferi B31] gi|6435847|gb|AAF08548.1|AE001583_3 conserved hypothetical protein [Borrelia burgdorferi B31] gi|34734011|gb|AAQ81893.1| conserved hypothetical protein [Borrelia burgdorferi] gi|215980592|gb|EEC21401.1| putative Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi 156a] Length = 330 Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 93/333 (27%), Positives = 149/333 (44%), Gaps = 30/333 (9%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I + + A + + G I PT+TVY + + + A+R + +KK+ PL+ +V Sbjct: 6 IISEDQFKIALKLIKMGEIIVFPTDTVYAIGANIYDEYAVRMINLVKKKSINEPLMLYVD 65 Query: 66 DISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 I +K+ +S P S L + F PGPLT VL + I NL T R+P T Sbjct: 66 TIEKIKELSSHVPKSAKILMEKFSPGPLTYVLK--KSIKIPKFINNNLDTVAIRIPKNKT 123 Query: 125 K-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI-------SKIGL 176 LI +PL + SAN S + S T+ S KE+ ++ G I S IG+ Sbjct: 124 ALNLIRKLKNPLVVSSANLSKRPSSTSF-----SMALKELNGLVGGIIMPKKNKDSNIGI 178 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQV 236 ESTI+ + V ILRPG + + +++ + Y V+ ++ LK ++ R ++ Sbjct: 179 ESTIIEFDSKDNVIILRPGAITKKMIEKVLGS--RYKVN--YAKETKIDLKKMFSYRLRI 234 Query: 237 RLRAIHV--NPREALIRFGNVPI--KNIENAIISL-----NLSKTGKLKEAAFNLFNYMK 287 + N R+ L V I + S N+ L E A NL+ + Sbjct: 235 PVHTFKRGDNIRKYLKTNTKVLITRDTFKFYFFSFLWDKKNIILFDSLIEYAENLYKELV 294 Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 A++ I + N LG AINNR+ +A++ Sbjct: 295 NAEEKYDQVIV-EIVENEELGYAINNRIVKASS 326 >gi|73748639|ref|YP_307878.1| putative translation factor Sua5 [Dehalococcoides sp. CBDB1] gi|289432664|ref|YP_003462537.1| Sua5/YciO/YrdC/YwlC family protein [Dehalococcoides sp. GT] gi|73660355|emb|CAI82962.1| putative translation factor Sua5 [Dehalococcoides sp. CBDB1] gi|288946384|gb|ADC74081.1| Sua5/YciO/YrdC/YwlC family protein [Dehalococcoides sp. GT] Length = 213 Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 64/198 (32%), Positives = 100/198 (50%), Gaps = 9/198 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + L G + PT+TVY + + N A+ R+++IK R L + DIS + Sbjct: 14 INRAVQVLKNGGVVIFPTDTVYAVGALASNTHAVNRVFDIKGRTNTKGLPALIGDISQIH 73 Query: 72 KHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPC-GFTKKLI 128 + A + PL+ LA +WPG LTLV L TD PL T +T R+P +++ Sbjct: 74 QVAKIFPPLARKLAAEYWPGGLTLV---LPKTDNIPLELTGGNETVAIRIPNQAAVIEML 130 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 + P+ SAN SG S N + + I+DGG G+ESTIV V + + Sbjct: 131 KRVAEPVTGTSANLSGCKSSLNASE-AKIQLGDRVDFILDGGQVSGGVESTIVTVNND-E 188 Query: 189 VRILRPGGL-EIETLKRA 205 ++I+R G + E + +K A Sbjct: 189 LKIIRQGAIKESDIMKTA 206 >gi|282853792|ref|ZP_06263129.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes J139] gi|282583245|gb|EFB88625.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes J139] Length = 287 Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 61/195 (31%), Positives = 102/195 (52%), Gaps = 6/195 (3%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD-IS 68 +AL +A + + G I +PT+TVYG+ D+ N A++RL K+R P VSD ++ Sbjct: 56 DALEQAADAIADGECIVLPTDTVYGIGADALNALAVQRLLNAKERGRDMPPPVLVSDSVA 115 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + + + LA+ +WPG LTLVL + + L N T RVP T++L Sbjct: 116 LPALCQHIPAGAKALAEKYWPGGLTLVLRAQESLGMD-LGETN-GTLAVRVPDQDQTREL 173 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PLA+ SAN+SG + + + + E+ + +D G S++G STI++ Sbjct: 174 LRMTG-PLAVSSANKSGHPAALTAQEA-ADQLGVEVAVYLDAGPSRVGESSTIIDFVSTT 231 Query: 188 KVRILRPGGLEIETL 202 +++R G L +E + Sbjct: 232 DGKVVRQGALSLEAI 246 >gi|314981453|gb|EFT25547.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL110PA3] gi|315092117|gb|EFT64093.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL110PA4] Length = 290 Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 61/195 (31%), Positives = 102/195 (52%), Gaps = 6/195 (3%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD-IS 68 +AL +A + + G I +PT+TVYG+ D+ N A++RL K+R P VSD ++ Sbjct: 59 DALEQAADAIADGECIVLPTDTVYGIGADALNALAVQRLLNAKERGRDMPPPVLVSDSVA 118 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + + + LA+ +WPG LTLVL + + L N T RVP T++L Sbjct: 119 LPALCQHIPAGAKALAEKYWPGGLTLVLRAQESLGMD-LGETN-GTLAVRVPDQDQTREL 176 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PLA+ SAN+SG + + + + E+ + +D G S++G STI++ Sbjct: 177 LRMTG-PLAVSSANKSGHPAALTAQEA-ADQLGVEVAVYLDAGPSRVGESSTIIDFVSTT 234 Query: 188 KVRILRPGGLEIETL 202 +++R G L +E + Sbjct: 235 DGKVVRQGALSLEAI 249 >gi|314923484|gb|EFS87315.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL001PA1] gi|315103527|gb|EFT75503.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL050PA2] Length = 290 Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 61/195 (31%), Positives = 102/195 (52%), Gaps = 6/195 (3%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD-IS 68 +AL +A + + G I +PT+TVYG+ D+ N A++RL K+R P VSD ++ Sbjct: 59 DALEQAADAIADGECIVLPTDTVYGIGADALNALAVQRLLNAKERGRDMPPPVLVSDSVA 118 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + + + LA+ +WPG LTLVL + + L N T RVP T++L Sbjct: 119 LPALCQHIPAGAKALAEKYWPGGLTLVLRAQESLGMD-LGETN-GTLAVRVPDQDQTREL 176 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PLA+ SAN+SG + + + + E+ + +D G S++G STI++ Sbjct: 177 LRMTG-PLAVSSANKSGHPAALTAQEA-ADQLGVEVAVYLDAGPSRVGESSTIIDFVSTT 234 Query: 188 KVRILRPGGLEIETL 202 +++R G L +E + Sbjct: 235 DGKVVRQGALSLEAI 249 >gi|237735225|ref|ZP_04565706.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|229380970|gb|EEO31061.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 201 Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 67/201 (33%), Positives = 103/201 (51%), Gaps = 9/201 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 + NA+ + + + +A PTETV+GL V + A+ LYE+K R + +S Sbjct: 7 EKNAIEEVAKLVSDSRVVAFPTETVFGLGVKFGSHQALDALYELKHRDKGKAISMMISKA 66 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 ++K+A VD + L F PG +T++L I TA+L T R+P F Sbjct: 67 EDIEKYAYVDETAKKLIAAFMPGMITIILK--KRPHIDDYFTASLDTIGIRIPDDPFVLS 124 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG-GISKIGLESTIVNVQC 185 L++ G P+ + SAN SG+ S+ + K ++ K IPLI+ G ISK STIV++ Sbjct: 125 LLDKTG-PMLVTSANLSGENSLVDDKAVMKVFHGK-IPLIVKGESISKKA--STIVDL-S 179 Query: 186 EKKVRILRPGGLEIETLKRAI 206 + KV ILR G + E + I Sbjct: 180 KGKVEILRLGDISKEQIAEVI 200 >gi|314966528|gb|EFT10627.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL082PA2] gi|315092952|gb|EFT64928.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL060PA1] gi|327327352|gb|EGE69128.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL103PA1] Length = 290 Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 61/195 (31%), Positives = 102/195 (52%), Gaps = 6/195 (3%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD-IS 68 +AL +A + + G I +PT+TVYG+ D+ N A++RL K+R P VSD ++ Sbjct: 59 DALEQAADAIADGECIVLPTDTVYGIGADALNALAVQRLLNAKERGRDMPPPVLVSDSVA 118 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + + + LA+ +WPG LTLVL + + L N T RVP T++L Sbjct: 119 LPALCQHIPAGAKALAEKYWPGGLTLVLRAQESLGMD-LGKTN-GTLAVRVPDQDQTREL 176 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PLA+ SAN+SG + + + + E+ + +D G S++G STI++ Sbjct: 177 LRMTG-PLAVSSANKSGHPAALTAQEA-ADQLGVEVAVYLDAGPSRVGESSTIIDFVSTT 234 Query: 188 KVRILRPGGLEIETL 202 +++R G L +E + Sbjct: 235 DGKVVRQGALSLEAI 249 >gi|313772060|gb|EFS38026.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL074PA1] gi|313791910|gb|EFS40011.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL110PA1] gi|313801608|gb|EFS42848.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL110PA2] gi|313810260|gb|EFS47981.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL083PA1] gi|313818788|gb|EFS56502.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL046PA2] gi|313820560|gb|EFS58274.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL036PA1] gi|313822635|gb|EFS60349.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL036PA2] gi|313825432|gb|EFS63146.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL063PA1] gi|313830590|gb|EFS68304.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL007PA1] gi|313833626|gb|EFS71340.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL056PA1] gi|313838321|gb|EFS76035.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL086PA1] gi|314924925|gb|EFS88756.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL036PA3] gi|314960550|gb|EFT04652.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL002PA2] gi|314962566|gb|EFT06666.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL082PA1] gi|314973591|gb|EFT17687.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL053PA1] gi|314975813|gb|EFT19908.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL045PA1] gi|314978721|gb|EFT22815.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL072PA2] gi|314983708|gb|EFT27800.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL005PA1] gi|314987889|gb|EFT31980.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL005PA2] gi|314989700|gb|EFT33791.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL005PA3] gi|315080407|gb|EFT52383.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL078PA1] gi|315084736|gb|EFT56712.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL027PA2] gi|315085420|gb|EFT57396.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL002PA3] gi|315088522|gb|EFT60498.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL072PA1] gi|315095864|gb|EFT67840.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL038PA1] gi|315105834|gb|EFT77810.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL030PA1] gi|327326416|gb|EGE68206.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL096PA2] gi|327443485|gb|EGE90139.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL013PA2] gi|327445688|gb|EGE92342.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL043PA2] gi|327448328|gb|EGE94982.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL043PA1] gi|327453371|gb|EGF00026.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL092PA1] gi|328754697|gb|EGF68313.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL020PA1] gi|328760893|gb|EGF74458.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL099PA1] Length = 290 Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 61/195 (31%), Positives = 102/195 (52%), Gaps = 6/195 (3%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD-IS 68 +AL +A + + G I +PT+TVYG+ D+ N A++RL K+R P VSD ++ Sbjct: 59 DALEQAADAIADGECIVLPTDTVYGIGADALNALAVQRLLNAKERGRDMPPPVLVSDSVA 118 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + + + LA+ +WPG LTLVL + + L N T RVP T++L Sbjct: 119 LPALCQHIPAGAKALAEKYWPGGLTLVLRAQESLGMD-LGETN-GTLAVRVPDQDQTREL 176 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PLA+ SAN+SG + + + + E+ + +D G S++G STI++ Sbjct: 177 LRMTG-PLAVSSANKSGHPAALTAQEA-ADQLGVEVAVYLDAGPSRVGESSTIIDFVSTT 234 Query: 188 KVRILRPGGLEIETL 202 +++R G L +E + Sbjct: 235 DGKVVRQGALSLEAI 249 >gi|313764218|gb|EFS35582.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL013PA1] gi|313812713|gb|EFS50427.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL025PA1] gi|313816311|gb|EFS54025.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL059PA1] gi|313827395|gb|EFS65109.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL063PA2] gi|314915696|gb|EFS79527.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL005PA4] gi|314917935|gb|EFS81766.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL050PA1] gi|314920318|gb|EFS84149.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL050PA3] gi|314931538|gb|EFS95369.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL067PA1] gi|314955549|gb|EFS99952.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL027PA1] gi|314957923|gb|EFT02026.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL002PA1] gi|314967571|gb|EFT11670.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL037PA1] gi|315098769|gb|EFT70745.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL059PA2] gi|315101461|gb|EFT73437.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL046PA1] gi|315108753|gb|EFT80729.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL030PA2] gi|327450547|gb|EGE97201.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL087PA3] gi|327454114|gb|EGF00769.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL083PA2] gi|328753197|gb|EGF66813.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL025PA2] gi|328753964|gb|EGF67580.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL087PA1] Length = 290 Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 61/195 (31%), Positives = 102/195 (52%), Gaps = 6/195 (3%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD-IS 68 +AL +A + + G I +PT+TVYG+ D+ N A++RL K+R P VSD ++ Sbjct: 59 DALEQAADAIADGECIVLPTDTVYGIGADALNALAVQRLLNAKERGRDMPPPVLVSDSVA 118 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + + + LA+ +WPG LTLVL + + L N T RVP T++L Sbjct: 119 LPALCQHIPAGAKALAEKYWPGGLTLVLRAQESLGMD-LGETN-GTLAVRVPDQDQTREL 176 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PLA+ SAN+SG + + + + E+ + +D G S++G STI++ Sbjct: 177 LRMTG-PLAVSSANKSGHPAALTAQEA-ADQLGVEVAVYLDAGPSRVGESSTIIDFVSTT 234 Query: 188 KVRILRPGGLEIETL 202 +++R G L +E + Sbjct: 235 DGKVVRQGALSLEAI 249 >gi|167755050|ref|ZP_02427177.1| hypothetical protein CLORAM_00554 [Clostridium ramosum DSM 1402] gi|167705100|gb|EDS19679.1| hypothetical protein CLORAM_00554 [Clostridium ramosum DSM 1402] Length = 201 Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 67/201 (33%), Positives = 103/201 (51%), Gaps = 9/201 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 + NA+ + + + +A PTETV+GL V + A+ LYE+K R + +S Sbjct: 7 EKNAIEEVAKLVSDSRVVAFPTETVFGLGVKFGSHQALDALYELKHRDKGKAISMMISKA 66 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 ++K+A VD + L F PG +T++L I TA+L T R+P F Sbjct: 67 EDIEKYAYVDETAKKLIAAFMPGMITIILK--KRPHIDDYFTASLDTIGIRIPDDPFVLS 124 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG-GISKIGLESTIVNVQC 185 L++ G P+ + SAN SG+ S+ + K ++ K IPLI+ G ISK STIV++ Sbjct: 125 LLDKTG-PMLVTSANLSGENSLVDDKAVMKVFHGK-IPLIVKGESISKEA--STIVDL-S 179 Query: 186 EKKVRILRPGGLEIETLKRAI 206 + KV ILR G + E + I Sbjct: 180 KGKVEILRLGDISKEQIAEVI 200 >gi|289425314|ref|ZP_06427091.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes SK187] gi|289428531|ref|ZP_06430215.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes J165] gi|295130810|ref|YP_003581473.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes SK137] gi|289154292|gb|EFD02980.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes SK187] gi|289158225|gb|EFD06444.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes J165] gi|291376823|gb|ADE00678.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes SK137] gi|315077780|gb|EFT49831.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL053PA2] Length = 287 Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 61/195 (31%), Positives = 102/195 (52%), Gaps = 6/195 (3%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD-IS 68 +AL +A + + G I +PT+TVYG+ D+ N A++RL K+R P VSD ++ Sbjct: 56 DALEQAADAIADGECIVLPTDTVYGIGADALNALAVQRLLNAKERGRDMPPPVLVSDSVA 115 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + + + LA+ +WPG LTLVL + + L N T RVP T++L Sbjct: 116 LPALCQHIPAGAKALAEKYWPGGLTLVLRAQESLGMD-LGETN-GTLAVRVPDQDQTREL 173 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PLA+ SAN+SG + + + + E+ + +D G S++G STI++ Sbjct: 174 LRMTG-PLAVSSANKSGHPAALTAQEA-ADQLGVEVAVYLDAGPSRVGESSTIIDFVSTT 231 Query: 188 KVRILRPGGLEIETL 202 +++R G L +E + Sbjct: 232 DGKVVRQGALSLEAI 246 >gi|310779285|ref|YP_003967618.1| translation factor SUA5 [Ilyobacter polytropus DSM 2926] gi|309748608|gb|ADO83270.1| translation factor SUA5 [Ilyobacter polytropus DSM 2926] Length = 209 Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 61/193 (31%), Positives = 103/193 (53%), Gaps = 9/193 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 + +G I PT+TVYG+ A++++Y K+R +PLI VSD ++V+K A +D Sbjct: 20 VKSGELIIYPTDTVYGVGGIIEKEEALKKIYVAKERTFSSPLIALVSDENIVEKIAYIDK 79 Query: 79 LSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134 + KL FWPG LT++L ++ + + ++ R+P +I G Sbjct: 80 NKEKIEKLMKSFWPGALTIILR--KKKNVPSVMVSGGESIGVRMPNHPLALDIIRACGGI 137 Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194 LA SAN SG+ S + S K + +++DGG +G+ESTI++++ +K ILR Sbjct: 138 LATTSANISGEPSPKRFSDV-SEEFKKRVDILVDGGACNLGIESTIIDMR--EKPFILRH 194 Query: 195 GGLEIETLKRAIS 207 GG+ E +++ I Sbjct: 195 GGISKEEIEKIIG 207 >gi|332675654|gb|AEE72470.1| SUA5 related protein [Propionibacterium acnes 266] Length = 280 Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 61/195 (31%), Positives = 102/195 (52%), Gaps = 6/195 (3%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD-IS 68 +AL +A + + G I +PT+TVYG+ D+ N A++RL K+R P VSD ++ Sbjct: 49 DALEQAADAIADGECIVLPTDTVYGIGADALNALAVQRLLNAKERGRDMPPPVLVSDSVA 108 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + + + LA+ +WPG LTLVL + + L N T RVP T++L Sbjct: 109 LPALCQHIPAGAKALAEKYWPGGLTLVLRAQESLGMD-LGETN-GTLAVRVPDQDQTREL 166 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PLA+ SAN+SG + + + + E+ + +D G S++G STI++ Sbjct: 167 LRMTG-PLAVSSANKSGHPAALTAQEA-ADQLGVEVAVYLDAGPSRVGESSTIIDFVSTT 224 Query: 188 KVRILRPGGLEIETL 202 +++R G L +E + Sbjct: 225 DGKVVRQGALSLEAI 239 >gi|312148920|gb|ADQ31566.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi JD1] Length = 330 Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 93/333 (27%), Positives = 149/333 (44%), Gaps = 30/333 (9%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I + + A + + G I PT+TVY + + + A+R + +KK+ PL+ +V Sbjct: 6 IISEDQFKIALKLIKMGEIIVFPTDTVYSIGANIYDEYAVRMINLVKKKSINEPLMLYVD 65 Query: 66 DISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 I +K+ +S P S L + F PGPLT VL + I NL T R+P T Sbjct: 66 TIEKIKELSSHVPKSAKILMEKFSPGPLTYVLK--KSIKIPKFINNNLDTVAIRIPKNKT 123 Query: 125 K-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI-------SKIGL 176 LI +PL + SAN S + S T+ S KE+ ++ G I S IG+ Sbjct: 124 ALNLIRKLKNPLVVSSANLSKRPSSTSF-----SMALKELNGLVGGIIMPKKNKDSNIGI 178 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQV 236 ESTI+ + V ILRPG + + +++ + Y V+ ++ LK ++ R ++ Sbjct: 179 ESTIIEFDSKDNVIILRPGAITKKMIEKVLGS--RYKVN--YAKETKIDLKKMFSYRLRI 234 Query: 237 RLRAIHV--NPREALIRFGNVPI--KNIENAIISL-----NLSKTGKLKEAAFNLFNYMK 287 + N R+ L V I + S N+ L E A NL+ + Sbjct: 235 PVHTFKRGDNIRKYLKTNTKVLITRDTFKFYFFSFLWDKKNIILFDSLIEYAENLYKELV 294 Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 A++ I + N LG AINNR+ +A++ Sbjct: 295 NAEEKYDQVIV-EIVENEELGYAINNRIVKASS 326 >gi|327331709|gb|EGE73446.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL096PA3] Length = 290 Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 61/195 (31%), Positives = 102/195 (52%), Gaps = 6/195 (3%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD-IS 68 +AL +A + + G I +PT+TVYG+ D+ N A++RL K+R P VSD ++ Sbjct: 59 DALEQAADAIADGECIVLPTDTVYGIGADALNALAVQRLLNAKERGRDMPPPVLVSDSVA 118 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + + + LA+ +WPG LTLVL + + L N T RVP T++L Sbjct: 119 LPALCQHIPAGAKALAEKYWPGGLTLVLRAQESLGMD-LGETN-GTLAVRVPDQDQTREL 176 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PLA+ SAN+SG + + + + E+ + +D G S++G STI++ Sbjct: 177 LRMTG-PLAVSSANKSGHPAALTAQEA-ADQLGVEVAVYLDAGPSRVGESSTIIDFVSTT 234 Query: 188 KVRILRPGGLEIETL 202 +++R G L +E + Sbjct: 235 DGKVVRQGALSLEAI 249 >gi|313807751|gb|EFS46238.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL087PA2] Length = 290 Score = 82.4 bits (202), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 61/195 (31%), Positives = 102/195 (52%), Gaps = 6/195 (3%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD-IS 68 +AL +A + + G I +PT+TVYG+ D+ N A++RL K+R P VSD ++ Sbjct: 59 DALEQAADAIADGECIVLPTDTVYGIGADALNTLAVQRLLNAKERGRDMPPPVLVSDSVA 118 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + + + LA+ +WPG LTLVL + + L N T RVP T++L Sbjct: 119 LPALCQHIPAGAKALAEKYWPGGLTLVLRAQESLGMD-LGETN-GTLAVRVPDQDQTREL 176 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PLA+ SAN+SG + + + + E+ + +D G S++G STI++ Sbjct: 177 LRMTG-PLAVSSANKSGHPAALTAQEA-ADQLGVEVAVYLDAGPSRVGESSTIIDFVSTT 234 Query: 188 KVRILRPGGLEIETL 202 +++R G L +E + Sbjct: 235 DGKVVRQGALSLEAI 249 >gi|327329872|gb|EGE71626.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL097PA1] Length = 300 Score = 82.4 bits (202), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 61/195 (31%), Positives = 102/195 (52%), Gaps = 6/195 (3%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD-IS 68 +AL +A + + G I +PT+TVYG+ D+ N A++RL K+R P VSD ++ Sbjct: 59 DALEQAADAIADGECIVLPTDTVYGIGADALNALAVQRLLNAKERGRDMPPPVLVSDSVA 118 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + + + LA+ +WPG LTLVL + + L N T RVP T++L Sbjct: 119 LPALCQHIPAGAKALAEKYWPGGLTLVLRAQESLGMD-LGETN-GTLAVRVPDQDQTREL 176 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PLA+ SAN+SG + + + + E+ + +D G S++G STI++ Sbjct: 177 LRMTG-PLAVSSANKSGHPAALTAQEA-ADQLGVEVAVYLDAGPSRVGESSTIIDFVSTT 234 Query: 188 KVRILRPGGLEIETL 202 +++R G L +E + Sbjct: 235 DGKVVRQGALSLEAI 249 >gi|224543569|ref|ZP_03684108.1| hypothetical protein CATMIT_02778 [Catenibacterium mitsuokai DSM 15897] gi|224523496|gb|EEF92601.1| hypothetical protein CATMIT_02778 [Catenibacterium mitsuokai DSM 15897] Length = 206 Score = 82.4 bits (202), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 61/175 (34%), Positives = 93/175 (53%), Gaps = 7/175 (4%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81 G +A PTETVYG+A + + R+ EIKKR + +S VKK+ VD + Sbjct: 20 GKIVAFPTETVYGVACLFDDLKGLDRIMEIKKRNPNKAVTLMLSKKDDVKKYGLVDEGTQ 79 Query: 82 HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSA 140 + F PG +T+VL L + D +S + T R+P F LI+ G PL++ SA Sbjct: 80 RVIDKFMPGRMTIVLKRLDSVDSRHVSGKD--TIGIRIPDSSFVLSLIDQTG-PLSVTSA 136 Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 N SGQ + TN K +L + + +I +++ G + ST+V++ + VRILR G Sbjct: 137 NLSGQGNTTNEKEVL-AQLDGQIDMVVRGQTAS-ATASTVVDL-SQGDVRILREG 188 >gi|323356868|ref|YP_004223264.1| translation factor (SUA5) [Microbacterium testaceum StLB037] gi|323273239|dbj|BAJ73384.1| putative translation factor (SUA5) [Microbacterium testaceum StLB037] Length = 253 Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 66/217 (30%), Positives = 104/217 (47%), Gaps = 27/217 (12%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + +R A + + G + +PT+TVYG+A D+ N A+ L E K R P V+ + Sbjct: 15 SGMRHARQAIGRGELVVLPTDTVYGIAADAFNARAVAGLLEAKGRGRQQPPPVLVAGVGT 74 Query: 70 VKKHASVDPLSL-HLAKLFWPGPLTLVLDL-----LSTTDIHPLSTANLKTACFRVPC-G 122 ++ + P ++ L + FWPG LT+VL D H T R+P Sbjct: 75 LRALVAEIPAAVDDLVREFWPGGLTIVLPAQPSLSWDLGDTH-------GTVAVRMPAHH 127 Query: 123 FTKKLIETYGHPLAIPSANRSGQ---ISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 T +L+E G PLA+ SAN +G + I + + +L S+ +D G S+ G+ ST Sbjct: 128 LTLELLEETG-PLAVSSANLTGMAAAVDIDSARDMLGDSVSA----YLDSGPSETGIAST 182 Query: 180 IVNVQ-----CEKKVRILRPGGLEIETLKRAISVELE 211 IV+ E +VR+LR G + E L+ + LE Sbjct: 183 IVDATTLVGGAEPRVRVLREGAVSRERLREVLGDLLE 219 >gi|256830242|ref|YP_003158970.1| Sua5/YciO/YrdC/YwlC family protein [Desulfomicrobium baculatum DSM 4028] gi|256579418|gb|ACU90554.1| Sua5/YciO/YrdC/YwlC family protein [Desulfomicrobium baculatum DSM 4028] Length = 204 Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 61/200 (30%), Positives = 97/200 (48%), Gaps = 7/200 (3%) Query: 10 NALRKA--CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 +A+R+A EF L + PTET Y L + +A+ R++ +K RP PL +SD Sbjct: 2 SAVREAEVLEFARGRL-VIYPTETFYALGCLATMHSAVERIFSVKGRPEGKPLPLIISDW 60 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGFTKK 126 M ++ + LA+ FWPGPL++V+++ + PL+ + R+ P + Sbjct: 61 QMAERFLRLTSAQEKLARKFWPGPLSIVVEV--DQRVSPLAQDRGGRSAVRMSPHPIAAR 118 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSI-CKEIPLIIDGGISKIGLESTIVNVQC 185 L G PL SANRSG+ ++ + + E +I D GL ST+V + Sbjct: 119 LCREAGAPLVSSSANRSGRPPACRLEELDPELVRLSEALVITDSPWPGGGLPSTLVEIVG 178 Query: 186 EKKVRILRPGGLEIETLKRA 205 VRILR G + +E + A Sbjct: 179 ANSVRILRAGAIPMEEISAA 198 >gi|95007168|emb|CAJ20389.1| hypothetical protein, conserved [Toxoplasma gondii RH] Length = 663 Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 76/168 (45%), Gaps = 31/168 (18%) Query: 18 FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM-------- 69 F GL +A PTETVYGL + P A R++ KKRPA +PLICHV + Sbjct: 55 FRRGGL-VAFPTETVYGLGAAATLPHACSRVFRCKKRPASDPLICHVVSVQQAFEQVYDL 113 Query: 70 ----VKKHASVDPLSLH-----------LAKLFWPGPLTLVL------DLLSTTDIHPLS 108 ++ A + LSL LA FWPGPL++V D + Sbjct: 114 DEGETEEAARGESLSLQEKRDLRVLIATLADAFWPGPLSIVAKGKILEDRRDGKGVALAV 173 Query: 109 TANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHIL 155 TA + R P + LI G P+ PSANR G+IS T H++ Sbjct: 174 TAGTRFVAARCPNHPYALSLIAAAGVPIVAPSANRFGRISPTRASHVI 221 >gi|237841787|ref|XP_002370191.1| yrdC domain protein [Toxoplasma gondii ME49] gi|211967855|gb|EEB03051.1| yrdC domain protein [Toxoplasma gondii ME49] gi|221482657|gb|EEE20995.1| yrdC domain protein, putative [Toxoplasma gondii GT1] gi|221503150|gb|EEE28856.1| yrdC domain protein, putative [Toxoplasma gondii VEG] Length = 762 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 58/168 (34%), Positives = 76/168 (45%), Gaps = 31/168 (18%) Query: 18 FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM-------- 69 F GL +A PTETVYGL + P A R++ KKRPA +PLICHV + Sbjct: 155 FRRGGL-VAFPTETVYGLGAAATLPHACSRVFRCKKRPASDPLICHVVSVQQAFEQVYDL 213 Query: 70 ----VKKHASVDPLSLH-----------LAKLFWPGPLTLVL------DLLSTTDIHPLS 108 ++ A + LSL LA FWPGPL++V D + Sbjct: 214 DEGETEEAARGESLSLQEKRDLRVLIATLADAFWPGPLSIVAKGKILEDRRDGKGVALAV 273 Query: 109 TANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHIL 155 TA + R P + LI G P+ PSANR G+IS T H++ Sbjct: 274 TAGTRFVAARCPNHPYALSLIAAAGVPIVAPSANRFGRISPTRASHVI 321 >gi|51246039|ref|YP_065923.1| hypothetical protein DP2187 [Desulfotalea psychrophila LSv54] gi|50877076|emb|CAG36916.1| hypothetical protein DP2187 [Desulfotalea psychrophila LSv54] Length = 218 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 66/204 (32%), Positives = 103/204 (50%), Gaps = 12/204 (5%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD-IS 68 +++ +A + + G +A PTET YGLAVD N AI RLY +K R PL+ V++ Sbjct: 20 SSILQAVDVIRRGGIVAFPTETSYGLAVDPYNVEAIERLYSLKGRHRSKPLLLLVANHAQ 79 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT-ACFRVPCGFTKKL 127 ++ ++ PL L FWPGPLTL+ T I + T KT A R P + Sbjct: 80 LLDCVCAIPPLYKPLIARFWPGPLTLIFQAKET--IPAILTGGSKTIAIRRSPHPVAQFF 137 Query: 128 IETYGHPLAIPSANRSGQ---ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 +E+ G PL SAN S + ++ + H+ + IID G + STI+ V+ Sbjct: 138 VESAGIPLTATSANFSQKKPALTAQDCLHMFGDL----VDYIIDDGQRGLNGFSTILAVK 193 Query: 185 CEKKVRILRPGGLEIETLKRAISV 208 E + ++R G L ++T+ R + + Sbjct: 194 KEGLI-VIREGELSLKTIARELDI 216 >gi|224796796|ref|YP_002642475.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi WI91-23] gi|224554416|gb|ACN55801.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi WI91-23] Length = 330 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 92/324 (28%), Positives = 146/324 (45%), Gaps = 30/324 (9%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A + + G I PT+TVY + + + A+R + +KK+ PL+ +V I +K+ + Sbjct: 15 ALKLIKMGEIIVFPTDTVYAIGANIYDEYAVRMINLVKKKSINEPLMLYVDTIEKIKELS 74 Query: 75 SVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-KLIETYG 132 S P S L + F PGPLT VL + I NL T R+P T LI Sbjct: 75 SHVPKSAKILMEKFSPGPLTYVLK--KSIKIPKFINNNLDTVAIRIPKNKTALNLIRKLK 132 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI-------SKIGLESTIVNVQC 185 +PL + SAN S + S T+ S KE+ ++ G I S IG+ESTI+ Sbjct: 133 NPLVVSSANLSKRPSSTSF-----SMALKELNGLVGGIIMPKKNKDSNIGIESTIIEFDS 187 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV-- 243 + V ILRPG + + +++ + Y V+ ++ LK ++ R ++ + Sbjct: 188 KDNVIILRPGAITKKMIEKVLGS--RYKVN--YAKETKIDLKKMFSYRLRIPVHTFKRGD 243 Query: 244 NPREALIRFGNVPI--KNIENAIISL-----NLSKTGKLKEAAFNLFNYMKIADDSGASS 296 N R+ L V I + S N+ L E A NL+ + A++ Sbjct: 244 NIRKYLKTNTKVLITRDTFKFYFFSFLWDKKNIILFDSLIEYAENLYKELVNAEEKYDQV 303 Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320 I + N LG AINNR+ +A++ Sbjct: 304 IV-EIVENEELGYAINNRIVKASS 326 >gi|269119268|ref|YP_003307445.1| Sua5/YciO/YrdC/YwlC family protein [Sebaldella termitidis ATCC 33386] gi|268613146|gb|ACZ07514.1| Sua5/YciO/YrdC/YwlC family protein [Sebaldella termitidis ATCC 33386] Length = 209 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 61/180 (33%), Positives = 90/180 (50%), Gaps = 14/180 (7%) Query: 25 IAI-PTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL-- 81 IAI PT+TVYG+ NP I R+YE K+R P+I +SDIS + K S + L Sbjct: 23 IAIFPTDTVYGIGAVYNNPEGIDRIYEAKQRDRSKPIIALISDISHLHKLISFEEEDLGN 82 Query: 82 --HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIP 138 + K +WPG LT+V D + A T R+P ++IE+ G + Sbjct: 83 ISEIMKKYWPGELTIVFDN------SKYNVAEDNTIGVRIPGDEILLRIIESCGGIVFTT 136 Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLE 198 SAN SG+ S + I S I ++ I+DGG G+ ST++ K+ +LR G ++ Sbjct: 137 SANISGEKSPVKTQDI-SYDILEKTDFILDGGTILNGVPSTVIKYSA-GKISVLREGNIK 194 >gi|307127429|ref|YP_003879460.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae 670-6B] gi|306484491|gb|ADM91360.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae 670-6B] Length = 200 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 62/186 (33%), Positives = 99/186 (53%), Gaps = 8/186 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L+ G + +PTETVYGL + + A+ +Y++K+RP L +V+ + + + P Sbjct: 9 LEKGGAVILPTETVYGLFAKALDEKAVDHVYQLKRRPRDKALNLNVASLEDILHFSKNQP 68 Query: 79 LSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136 L L + F PGPLT++L+ + + ++L T FR+P T LI G PL Sbjct: 69 AYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIRETG-PLI 125 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SGQ S + IL + + L D ++ G +STIV++ + KV+ILR G Sbjct: 126 GPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGD-KVKILRQGA 182 Query: 197 LEIETL 202 ++ E + Sbjct: 183 IKREDI 188 >gi|167044297|gb|ABZ08976.1| putative yrdC domain protein [uncultured marine crenarchaeote HF4000_APKG6B14] Length = 199 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 68/202 (33%), Positives = 98/202 (48%), Gaps = 6/202 (2%) Query: 4 MSITDSNA-LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 M I+ S+A ++ A + ++ G + PT+TVYGL + N A+ LYEIKKR P Sbjct: 1 MKISCSDADIQIAAKAINDGATVVFPTDTVYGLGCNPYNHEAVLSLYEIKKRKKTKPFPV 60 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 ++K A +PL +A+ FWPGP+TL+L + +I + K A RVP Sbjct: 61 IGYAKKELEKIAEFNPLEEKIAEKFWPGPITLILK-VKDKEIQKSLGLDGKIA-VRVPNN 118 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 + L SAN SG + K S L++DGGI ESTIV Sbjct: 119 QCVLALLKECKLLVATSANISGTAPFNDPKE--CSENLSGYDLLMDGGIISSQGESTIVE 176 Query: 183 VQCEKKVRILRPGGLEIETLKR 204 ++ VRILR G + E +K+ Sbjct: 177 IE-NNDVRILRKGNVSEEEIKK 197 >gi|148272340|ref|YP_001221901.1| hypothetical protein CMM_1160 [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830270|emb|CAN01204.1| conserved hypothetical protein [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 309 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 70/231 (30%), Positives = 112/231 (48%), Gaps = 11/231 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +R A + + G + IPT+TVYG+A D+ NP A++RL + K R P + S Sbjct: 15 TGMRLARQAVGRGEVVVIPTDTVYGIAADAFNPDAVQRLLDAKGRGRDAPPPVLIPGQST 74 Query: 70 VKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 + A P + L FWPG LT++L + + + L T R+P F +L Sbjct: 75 LDALADFVPDVVRRLVDEFWPGGLTVIL-VAQPSLVWDLGETR-GTVALRMPANSFALEL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN----V 183 + G PLA+ SANR+GQ + + + + + + +D G + G STIV+ Sbjct: 133 LAETG-PLAVSSANRTGQPAAATAQEAV-DQLGGSVDVFLD-GGAAGGAASTIVDASRVT 189 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRS 234 Q +VRI+R G + +++ I ELE V + P+ P + + APR Sbjct: 190 QAGGRVRIVREGAITRAQIQQLIGDELEPVVTAPTEPEEPAVPDAPEAPRG 240 >gi|322389537|ref|ZP_08063088.1| Sua5/YciO/YrdC family protein [Streptococcus parasanguinis ATCC 903] gi|321143812|gb|EFX39239.1| Sua5/YciO/YrdC family protein [Streptococcus parasanguinis ATCC 903] Length = 203 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 69/205 (33%), Positives = 102/205 (49%), Gaps = 11/205 (5%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L+AG + +PTETVYG+ + + A+ +YE+K+RP L +V+ V+ ++ P Sbjct: 8 LEAGRAVILPTETVYGIFAKALDQEAVDYIYELKRRPREKALNLNVAGEEDVRIYSKDQP 67 Query: 79 LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136 L L F PGPLT++L + + + L T FR+P T +LI YG PL Sbjct: 68 SYLTKLIDSFLPGPLTIILQ--ANEKVPGWIHSGLDTVGFRIPAHPKTLELIRKYG-PLV 124 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SG S T + I+ S + +P I D G +STI+++ K RILR G Sbjct: 125 GPSANLSGHASGTKYQAIV-SEFDQVVPGIEDDDFL-TGQDSTILDISG-SKARILRQGS 181 Query: 197 LEIETLKRAISVELEYCVDETSTPQ 221 + L + E +E PQ Sbjct: 182 ITKADLLAQVP---ELSFEEDELPQ 203 >gi|27364487|ref|NP_760015.1| Sua5 YciO YrdC YwlC family protein [Vibrio vulnificus CMCP6] gi|81448837|sp|Q8DDD6|RIMN_VIBVU RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|212288261|sp|Q7MGL3|RIMN_VIBVY RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|27360606|gb|AAO09542.1| Sua5 YciO YrdC YwlC family protein [Vibrio vulnificus CMCP6] Length = 186 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 59/183 (32%), Positives = 89/183 (48%), Gaps = 7/183 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++ + L G +A PTE V+GL D N AI RL IK+RP+ LI +D ++ Sbjct: 5 LQQVVKALKQGQVVAYPTEGVFGLGCDPDNEVAIERLLTIKQRPSDKGLILIAADFQQLQ 64 Query: 72 KHASVDPLSL-HLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + LS L ++F WPGP T V+ ++ L T +T RV +KL Sbjct: 65 PYLDLTSLSAEQLQRVFATWPGPYTWVMP--ASARASALVTGYRQTVAVRVSDHPLVQKL 122 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 YG PL SAN SGQ V+ + + +I +I+ G I + S I + + E+ Sbjct: 123 CSEYGKPLTSTSANLSGQTECKTVEQV-QDQLGSQISVILFGEIGERHRPSEIRDARTEQ 181 Query: 188 KVR 190 +R Sbjct: 182 LLR 184 >gi|320154891|ref|YP_004187270.1| YrdC/Sua5 family protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA [Vibrio vulnificus MO6-24/O] gi|319930203|gb|ADV85067.1| yrdC/Sua5 family protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA [Vibrio vulnificus MO6-24/O] Length = 185 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 59/183 (32%), Positives = 89/183 (48%), Gaps = 7/183 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++ + L G +A PTE V+GL D N AI RL IK+RP+ LI +D ++ Sbjct: 4 LQQVVKALKQGQVVAYPTEGVFGLGCDPDNEVAIERLLTIKQRPSDKGLILIAADFQQLQ 63 Query: 72 KHASVDPLSL-HLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + LS L ++F WPGP T V+ ++ L T +T RV +KL Sbjct: 64 PYLDLTSLSAEQLQRVFATWPGPYTWVMP--ASARASALVTGYRQTVAVRVSDHPLVQKL 121 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 YG PL SAN SGQ V+ + + +I +I+ G I + S I + + E+ Sbjct: 122 CSEYGKPLTSTSANLSGQTECKTVEQV-QDQLGSQISVILFGEIGERHRPSEIRDARTEQ 180 Query: 188 KVR 190 +R Sbjct: 181 LLR 183 >gi|149006294|ref|ZP_01830006.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae SP18-BS74] gi|147762071|gb|EDK69033.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae SP18-BS74] Length = 199 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 62/186 (33%), Positives = 99/186 (53%), Gaps = 8/186 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L+ G + +PTETVYGL + + A+ +Y++K+RP L +V+ + + + P Sbjct: 8 LEKGGAVILPTETVYGLFAKALDEKAVDHVYQLKRRPRDKALNLNVASLEDILHFSKNQP 67 Query: 79 LSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136 L L + F PGPLT++L+ + + ++L T FR+P T LI G PL Sbjct: 68 AYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIRETG-PLI 124 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SGQ S + IL + + L D ++ G +STIV++ + KV+ILR G Sbjct: 125 GPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGD-KVKILRQGA 181 Query: 197 LEIETL 202 ++ E + Sbjct: 182 IKREDI 187 >gi|270292699|ref|ZP_06198910.1| Sua5/YciO/YrdC family protein [Streptococcus sp. M143] gi|270278678|gb|EFA24524.1| Sua5/YciO/YrdC family protein [Streptococcus sp. M143] Length = 200 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 64/189 (33%), Positives = 101/189 (53%), Gaps = 14/189 (7%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDISMVKKHAS 75 L+ G + +PTETVYGL + + A+ +Y++K+RP A+N + ++ DI K+ Sbjct: 9 LEKGGAVVLPTETVYGLFAKALDEKAVDHVYQLKRRPRDKALNLNVAYLEDILHFSKNQ- 67 Query: 76 VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133 P L L + F PGPLT++L+ + + + L T FR+P T LI+ G Sbjct: 68 --PTYLQKLVETFLPGPLTIILE--ANDRVPYWVNSGLATVGFRMPSHPITLDLIQETG- 122 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 PL PSAN SGQ S IL + + L D ++ G +STI+++ + KV+ILR Sbjct: 123 PLIGPSANISGQASGVTFAQILEDFDQEVLGLEDDAFLT--GQDSTILDLSGD-KVKILR 179 Query: 194 PGGLEIETL 202 G ++ E + Sbjct: 180 QGAIKREDI 188 >gi|322376708|ref|ZP_08051201.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus sp. M334] gi|321282515|gb|EFX59522.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus sp. M334] Length = 200 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 65/189 (34%), Positives = 101/189 (53%), Gaps = 14/189 (7%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDISMVKKHAS 75 L+ G + +PTETVYGL + + A+ +Y++K RP A+N I + DI K+ Sbjct: 9 LENGGAVVLPTETVYGLFAKALDEKAVDHVYQLKHRPRDKALNLNIASLEDILHFSKNQ- 67 Query: 76 VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133 P L L ++F PGPLT++L+ + + + L T FR+P FT LI G Sbjct: 68 --PAYLQKLVEIFLPGPLTIILE--ANDRVPYWVNSGLATVGFRMPSHPFTLNLIRETG- 122 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 PL PSAN SGQ S + IL + + + D ++ G +STI+++ + KV+ILR Sbjct: 123 PLIGPSANISGQASGVTFEQILEDFDQEVLGMEDDAFLT--GQDSTILDLSGD-KVKILR 179 Query: 194 PGGLEIETL 202 G ++ E + Sbjct: 180 QGTIKREDI 188 >gi|315222984|ref|ZP_07864863.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus anginosus F0211] gi|315187934|gb|EFU21670.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus anginosus F0211] Length = 196 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 62/193 (32%), Positives = 100/193 (51%), Gaps = 8/193 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + K E L +G + +PTETVYGL + + A+ +Y++K RP L +VS + + Sbjct: 1 MDKIEEMLSSGGAVVLPTETVYGLFCKALDEQAVSHVYDLKGRPREKALNLNVSSLEEIY 60 Query: 72 KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + + P L L + F PGPLT++L + + + +KT FRVP T LI Sbjct: 61 QFSKHQPQYLKKLYQAFLPGPLTIILQ--ANEQVPVWVNSGMKTIGFRVPSHPKTLDLIR 118 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 +G PL PSAN SG+ S N + I++ + + + D ++ G +STI+++ E Sbjct: 119 KFG-PLIGPSANLSGKSSGVNFQQIMTDFNYEVLGIEDDAFLT--GQDSTILDLSGE-TA 174 Query: 190 RILRPGGLEIETL 202 ILR G + E + Sbjct: 175 YILRQGAVTCEEI 187 >gi|270015172|gb|EFA11620.1| hypothetical protein TcasGA2_TC030645 [Tribolium castaneum] Length = 203 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/194 (31%), Positives = 92/194 (47%), Gaps = 26/194 (13%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A + L +G IA+PT+TVYGLA D+ N T+I +LY IK R P+ + D+ VK A Sbjct: 3 AVDLLKSGRVIALPTDTVYGLACDATNITSINKLYSIKGRNEAKPVAICLGDVPQVKAWA 62 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-------FTKKL 127 + L L + PGP+T++L ST D K+ F G F + L Sbjct: 63 KIGHLPQGLLESLLPGPVTVILTSASTLD---------KSLSFNAKVGIRIPDYHFIRAL 113 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE------STIV 181 G PLA+ SAN S + S + + ++ + DGG +GL+ ST++ Sbjct: 114 ARGLGRPLALTSANLSNEPSSLTINEF--QDLWAQVGAVFDGG--NLGLDDSRRRASTVI 169 Query: 182 NVQCEKKVRILRPG 195 ++ I+R G Sbjct: 170 DLSECGLFTIVRHG 183 >gi|183603846|ref|ZP_02722143.2| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae MLV-016] gi|225856677|ref|YP_002738188.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae P1031] gi|183577918|gb|EDT98446.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae MLV-016] gi|225724879|gb|ACO20731.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae P1031] gi|301799988|emb|CBW32578.1| conserved hypothetical protein [Streptococcus pneumoniae OXC141] gi|332200607|gb|EGJ14679.1| yrdC domain protein [Streptococcus pneumoniae GA41317] Length = 200 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 62/186 (33%), Positives = 99/186 (53%), Gaps = 8/186 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L+ G + +PTETVYGL + + A+ +Y++K+RP L +V+ + + + P Sbjct: 9 LENGGAVILPTETVYGLFAKALDEKAVDHVYQLKRRPRDKALNLNVASLEDILHFSKNQP 68 Query: 79 LSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136 L L + F PGPLT++L+ + + ++L T FR+P T LI G PL Sbjct: 69 AYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIRETG-PLI 125 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SGQ S + IL + + L D ++ G +STIV++ + KV+ILR G Sbjct: 126 GPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGD-KVKILRQGA 182 Query: 197 LEIETL 202 ++ E + Sbjct: 183 IKREDI 188 >gi|322391880|ref|ZP_08065345.1| Sua5/YciO/YrdC family protein [Streptococcus peroris ATCC 700780] gi|321145360|gb|EFX40756.1| Sua5/YciO/YrdC family protein [Streptococcus peroris ATCC 700780] Length = 200 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/186 (32%), Positives = 99/186 (53%), Gaps = 8/186 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L+ G + +PTETVYGL + + A+ +Y++K+RP L +++ + ++ + P Sbjct: 9 LENGGAVVLPTETVYGLFAKALDEKAVEHVYQLKRRPKDKALNLNIASLEAIEFFSKNQP 68 Query: 79 LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136 L L + F PGPLT++L+ + + + LKT FR+P T LI G PL Sbjct: 69 TYLKRLVEAFLPGPLTIILE--ANDRVPYWVNSGLKTVGFRMPSHPITLDLIRETG-PLI 125 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SG +S K IL + + L D ++ G +STI+++ + KV+ILR G Sbjct: 126 GPSANISGHVSGIVFKDILKDFDQEVLGLEDDAFLT--GQDSTILDLSGD-KVKILRQGA 182 Query: 197 LEIETL 202 + E + Sbjct: 183 ITREDI 188 >gi|148984976|ref|ZP_01818219.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae SP3-BS71] gi|147922674|gb|EDK73791.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae SP3-BS71] Length = 199 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 62/186 (33%), Positives = 99/186 (53%), Gaps = 8/186 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L+ G + +PTETVYGL + + A+ +Y++K+RP L +V+ + + + P Sbjct: 8 LENGGAVILPTETVYGLFAKALDEKAVDHVYQLKRRPRDKALNLNVASLEDILHFSKNQP 67 Query: 79 LSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136 L L + F PGPLT++L+ + + ++L T FR+P T LI G PL Sbjct: 68 AYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIRETG-PLI 124 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SGQ S + IL + + L D ++ G +STIV++ + KV+ILR G Sbjct: 125 GPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGD-KVKILRQGA 181 Query: 197 LEIETL 202 ++ E + Sbjct: 182 IKREDI 187 >gi|196019468|ref|XP_002118987.1| hypothetical protein TRIADDRAFT_35031 [Trichoplax adhaerens] gi|190577439|gb|EDV18528.1| hypothetical protein TRIADDRAFT_35031 [Trichoplax adhaerens] Length = 185 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 59/175 (33%), Positives = 91/175 (52%), Gaps = 5/175 (2%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 I IPT+T+Y L+ D+ N AI+++Y+IK+R L +S+I M + +A+ L+LA Sbjct: 1 ICIPTDTIYALSCDATNIEAIQKIYKIKQRALDKTLPMFMSNIKMARLYANFYKKELNLA 60 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRS 143 FWPG LTLV + +T P N + RVP + + ++ P+ SAN S Sbjct: 61 DKFWPGALTLVSRIKNTHKNLPNLLKNNQKVAIRVPKNKLIQSVCQSINKPIIATSANIS 120 Query: 144 GQISITNVKHILSSSICKEIPLIIDGG--ISKIGLE-STIVNVQCEKKVRILRPG 195 Q +I ++ I+ ++ LII +S L STI+ +K RILR G Sbjct: 121 NQKNINSLDEII-KEFENKVNLIIKDNRELSDNCLTASTIIEFTNNEKYRILRKG 174 >gi|194397422|ref|YP_002037657.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae G54] gi|194357089|gb|ACF55537.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae G54] Length = 200 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 66/189 (34%), Positives = 101/189 (53%), Gaps = 14/189 (7%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDISMVKKHAS 75 L+ G + +PTETVYGL + + A+ +Y++K+RP A+N I + DI K+ Sbjct: 9 LEKGGAVILPTETVYGLFAKALDEKAVDHVYQLKRRPRDKALNLNIASLEDILHFSKNQ- 67 Query: 76 VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133 P L L + F PGPLT++L+ + + ++L T FR+P T LI G Sbjct: 68 --PAYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIRETG- 122 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 PL PSAN SGQ S + IL + + L D ++ G +STIV++ + KV+ILR Sbjct: 123 PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGD-KVKILR 179 Query: 194 PGGLEIETL 202 G ++ E + Sbjct: 180 QGAIKREDI 188 >gi|296532236|ref|ZP_06894982.1| Sua5/YciO/YrdC/YwlC family protein [Roseomonas cervicalis ATCC 49957] gi|296267433|gb|EFH13312.1| Sua5/YciO/YrdC/YwlC family protein [Roseomonas cervicalis ATCC 49957] Length = 127 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 52/126 (41%), Positives = 63/126 (50%), Gaps = 11/126 (8%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 A+ +A L AG +A PTETVYGL D+RN A+ +Y K RP NPLI H S+ Sbjct: 13 AVEQAAALLRAGRLVAFPTETVYGLGADARNDAAVAAIYAAKGRPRFNPLISHFSESGAA 72 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130 D + LA FWPGPLTLVL + I L+ A L + RVP Sbjct: 73 FAEVVEDDRARALAARFWPGPLTLVLPRSPGSRISELAAAGLPSLAVRVPA--------- 123 Query: 131 YGHPLA 136 HPLA Sbjct: 124 --HPLA 127 >gi|169833958|ref|YP_001694466.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae Hungary19A-6] gi|183603195|ref|ZP_02713042.2| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae SP195] gi|183603653|ref|ZP_02718594.2| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae CDC3059-06] gi|221231775|ref|YP_002510927.1| hypothetical protein SPN23F_09450 [Streptococcus pneumoniae ATCC 700669] gi|225854523|ref|YP_002736035.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae JJA] gi|225861005|ref|YP_002742514.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae Taiwan19F-14] gi|298230458|ref|ZP_06964139.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255328|ref|ZP_06978914.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502958|ref|YP_003724898.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae TCH8431/19A] gi|307067801|ref|YP_003876767.1| putative translation factor [Streptococcus pneumoniae AP200] gi|168996460|gb|ACA37072.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae Hungary19A-6] gi|183572442|gb|EDT92970.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae SP195] gi|183575597|gb|EDT96125.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae CDC3059-06] gi|220674235|emb|CAR68770.1| conserved hypothetical protein [Streptococcus pneumoniae ATCC 700669] gi|225722954|gb|ACO18807.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae JJA] gi|225728267|gb|ACO24118.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae Taiwan19F-14] gi|298238553|gb|ADI69684.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae TCH8431/19A] gi|301794158|emb|CBW36568.1| conserved hypothetical protein [Streptococcus pneumoniae INV104] gi|306409338|gb|ADM84765.1| Putative translation factor (SUA5) [Streptococcus pneumoniae AP200] gi|327389394|gb|EGE87739.1| yrdC domain protein [Streptococcus pneumoniae GA04375] gi|332073354|gb|EGI83833.1| yrdC domain protein [Streptococcus pneumoniae GA17570] gi|332075370|gb|EGI85839.1| yrdC domain protein [Streptococcus pneumoniae GA41301] gi|332201493|gb|EGJ15563.1| yrdC domain protein [Streptococcus pneumoniae GA47368] gi|332202884|gb|EGJ16952.1| yrdC domain protein [Streptococcus pneumoniae GA47901] Length = 200 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 66/189 (34%), Positives = 100/189 (52%), Gaps = 14/189 (7%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDISMVKKHAS 75 L+ G + +PTETVYGL + + A+ +Y++K+RP A+N I DI K+ Sbjct: 9 LENGGAVVLPTETVYGLFAKALDEKAVDHVYQLKRRPRDKALNLNIASFEDILHFSKNQ- 67 Query: 76 VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133 P L L + F PGPLT++L+ + + ++L T FR+P T LI G Sbjct: 68 --PTYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIRETG- 122 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 PL PSAN SGQ S + IL + + L D ++ G +STIV++ + KV+ILR Sbjct: 123 PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGD-KVKILR 179 Query: 194 PGGLEIETL 202 G ++ E + Sbjct: 180 QGAIKREDI 188 >gi|172079499|ref|ZP_02708045.2| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae CDC1873-00] gi|172043340|gb|EDT51386.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae CDC1873-00] Length = 200 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 66/189 (34%), Positives = 100/189 (52%), Gaps = 14/189 (7%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDISMVKKHAS 75 L+ G + +PTETVYGL + + A+ +Y++K+RP A+N I DI K+ Sbjct: 9 LENGGAVVLPTETVYGLFAKALDEKAVDHVYQLKRRPRDKALNLNIASFEDILHFSKNQ- 67 Query: 76 VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133 P L L + F PGPLT++L+ + + ++L T FR+P T LI G Sbjct: 68 --PAYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIRETG- 122 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 PL PSAN SGQ S + IL + + L D ++ G +STIV++ + KV+ILR Sbjct: 123 PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGD-KVKILR 179 Query: 194 PGGLEIETL 202 G ++ E + Sbjct: 180 QGAIKREDI 188 >gi|149012961|ref|ZP_01833850.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae SP19-BS75] gi|303255578|ref|ZP_07341629.1| hypothetical protein CGSSpBS455_08777 [Streptococcus pneumoniae BS455] gi|147763114|gb|EDK70055.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae SP19-BS75] gi|301801856|emb|CBW34574.1| conserved hypothetical protein [Streptococcus pneumoniae INV200] gi|302597434|gb|EFL64529.1| hypothetical protein CGSSpBS455_08777 [Streptococcus pneumoniae BS455] Length = 200 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 66/189 (34%), Positives = 100/189 (52%), Gaps = 14/189 (7%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDISMVKKHAS 75 L+ G + +PTETVYGL + + A+ +Y++K+RP A+N I DI K+ Sbjct: 9 LENGGAVVLPTETVYGLFAKALDEKAVDHVYQLKRRPRDKALNLNIASFEDILHFSKNQ- 67 Query: 76 VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133 P L L + F PGPLT++L+ + + ++L T FR+P T LI G Sbjct: 68 --PTYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIRETG- 122 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 PL PSAN SGQ S + IL + + L D ++ G +STIV++ + KV+ILR Sbjct: 123 PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGD-KVKILR 179 Query: 194 PGGLEIETL 202 G ++ E + Sbjct: 180 QGAIKREDI 188 >gi|317063168|ref|ZP_07927653.1| SUA5 protein [Fusobacterium ulcerans ATCC 49185] gi|313688844|gb|EFS25679.1| SUA5 protein [Fusobacterium ulcerans ATCC 49185] Length = 219 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/183 (33%), Positives = 99/183 (54%), Gaps = 10/183 (5%) Query: 18 FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77 L G I PT+TVYG+ + AI ++Y+ K+R +PLI VSD+S +++ A ++ Sbjct: 22 LLKDGNLIIYPTDTVYGVGGIIESDEAITKVYKAKERSFKSPLIVLVSDVSKIEEIAYIE 81 Query: 78 PLSLH----LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-KLIETYG 132 + L K FWPG LT++L+ ++ + + KT R+P T K+IE G Sbjct: 82 EKNREKIEKLIKKFWPGGLTIILN--KKENVPDIMVSGGKTVGVRMPDLDTALKIIEAAG 139 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192 L SAN SG+ + + + LS + + + +++DGG IG STI+++ K +IL Sbjct: 140 GLLPTTSANISGEATPKSYEE-LSEAFKERVEILVDGGKCPIGNASTIIDMS--DKPKIL 196 Query: 193 RPG 195 R G Sbjct: 197 RTG 199 >gi|37681401|ref|NP_936010.1| putative translation factor [Vibrio vulnificus YJ016] gi|37200153|dbj|BAC95981.1| putative translation factor [Vibrio vulnificus YJ016] Length = 237 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 59/183 (32%), Positives = 89/183 (48%), Gaps = 7/183 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++ + L G +A PTE V+GL D N AI RL IK+RP+ LI +D ++ Sbjct: 56 LQQVVKALKQGQVVAYPTEGVFGLGCDPDNEVAIERLLTIKQRPSDKGLILIAADFQQLQ 115 Query: 72 KHASVDPLSL-HLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + LS L ++F WPGP T V+ ++ L T +T RV +KL Sbjct: 116 PYLDLTSLSAEQLQRVFATWPGPYTWVMP--ASARASALVTGYRQTVAVRVSDHPLVQKL 173 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 YG PL SAN SGQ V+ + + +I +I+ G I + S I + + E+ Sbjct: 174 CSEYGKPLTSTSANLSGQTECKTVEQV-QDQLGSQISVILFGEIGERHRPSEIRDARTEQ 232 Query: 188 KVR 190 +R Sbjct: 233 LLR 235 >gi|257468920|ref|ZP_05633014.1| SUA5 protein [Fusobacterium ulcerans ATCC 49185] Length = 216 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/183 (33%), Positives = 99/183 (54%), Gaps = 10/183 (5%) Query: 18 FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77 L G I PT+TVYG+ + AI ++Y+ K+R +PLI VSD+S +++ A ++ Sbjct: 19 LLKDGNLIIYPTDTVYGVGGIIESDEAITKVYKAKERSFKSPLIVLVSDVSKIEEIAYIE 78 Query: 78 PLSLH----LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-KLIETYG 132 + L K FWPG LT++L+ ++ + + KT R+P T K+IE G Sbjct: 79 EKNREKIEKLIKKFWPGGLTIILN--KKENVPDIMVSGGKTVGVRMPDLDTALKIIEAAG 136 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192 L SAN SG+ + + + LS + + + +++DGG IG STI+++ K +IL Sbjct: 137 GLLPTTSANISGEATPKSYEE-LSEAFKERVEILVDGGKCPIGNASTIIDMS--DKPKIL 193 Query: 193 RPG 195 R G Sbjct: 194 RTG 196 >gi|148994241|ref|ZP_01823534.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae SP9-BS68] gi|148998844|ref|ZP_01826280.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae SP11-BS70] gi|147755271|gb|EDK62322.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae SP11-BS70] gi|147927382|gb|EDK78413.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae SP9-BS68] Length = 199 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 66/189 (34%), Positives = 100/189 (52%), Gaps = 14/189 (7%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDISMVKKHAS 75 L+ G + +PTETVYGL + + A+ +Y++K+RP A+N I DI K+ Sbjct: 8 LENGGAVVLPTETVYGLFAKALDEKAVDHVYQLKRRPRDKALNLNIASFEDILHFSKNQ- 66 Query: 76 VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133 P L L + F PGPLT++L+ + + ++L T FR+P T LI G Sbjct: 67 --PTYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIRETG- 121 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 PL PSAN SGQ S + IL + + L D ++ G +STIV++ + KV+ILR Sbjct: 122 PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGD-KVKILR 178 Query: 194 PGGLEIETL 202 G ++ E + Sbjct: 179 QGAIKREDI 187 >gi|306829486|ref|ZP_07462676.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus mitis ATCC 6249] gi|304428572|gb|EFM31662.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus mitis ATCC 6249] Length = 200 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 61/186 (32%), Positives = 98/186 (52%), Gaps = 8/186 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L+ G + +PTETVYGL ++ + A+ +Y++K+RP L +V+ + + + P Sbjct: 9 LEKGGAVVLPTETVYGLFANALDEKAVDHVYQLKRRPRDKALNLNVASLEDILHFSKNQP 68 Query: 79 LSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136 L L + F PGPLT++L+ + + + L T FR+P T LI G PL Sbjct: 69 TYLQKLVEAFLPGPLTIILE--ANDRVPYWVNSGLATVGFRMPSHPITLDLIRETG-PLI 125 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SGQ S IL + + L D ++ G +STI+++ + KV+ILR G Sbjct: 126 GPSANISGQASGVTFAQILKDFDQEVLGLEDDAFLT--GQDSTILDLSGD-KVKILRQGA 182 Query: 197 LEIETL 202 ++ E + Sbjct: 183 IKREDI 188 >gi|237650079|ref|ZP_04524331.1| hypothetical protein SpneC1_05027 [Streptococcus pneumoniae CCRI 1974] gi|237822152|ref|ZP_04597997.1| hypothetical protein SpneC19_07568 [Streptococcus pneumoniae CCRI 1974M2] Length = 200 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 66/189 (34%), Positives = 100/189 (52%), Gaps = 14/189 (7%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDISMVKKHAS 75 L+ G + +PTETVYGL + + A+ +Y++K+RP A+N I DI K+ Sbjct: 9 LEKGGAVVLPTETVYGLFSKALDEKAVDHVYQLKRRPRDKALNLNIASFEDILHFSKNQ- 67 Query: 76 VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133 P L L + F PGPLT++L+ + + ++L T FR+P T LI G Sbjct: 68 --PAYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIRETG- 122 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 PL PSAN SGQ S + IL + + L D ++ G +STIV++ + KV+ILR Sbjct: 123 PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGD-KVKILR 179 Query: 194 PGGLEIETL 202 G ++ E + Sbjct: 180 QGAIKREDI 188 >gi|182683970|ref|YP_001835717.1| Sua5/YciO/YrdC family protein [Streptococcus pneumoniae CGSP14] gi|182629304|gb|ACB90252.1| Sua5/YciO/YrdC family protein [Streptococcus pneumoniae CGSP14] Length = 209 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 67/196 (34%), Positives = 103/196 (52%), Gaps = 14/196 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDIS 68 + K + L+ G + +PTETVYGL + + A+ +Y++K+RP A+N I DI Sbjct: 11 MDKIRQELENGGAVVLPTETVYGLFAKALDEKAVDHVYQLKRRPRDKALNLNIASFEDIL 70 Query: 69 MVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 K+ P L L + F PGPLT++L+ + + ++L T FR+P T Sbjct: 71 HFSKNQ---PTYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLD 125 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LI G PL PSAN SGQ S + IL + + L D ++ G +STIV++ + Sbjct: 126 LIRETG-PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGD 182 Query: 187 KKVRILRPGGLEIETL 202 KV+ILR G ++ E + Sbjct: 183 -KVKILRQGAIKREDI 197 >gi|116516461|ref|YP_816386.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae D39] gi|225858813|ref|YP_002740323.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae 70585] gi|116077037|gb|ABJ54757.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae D39] gi|225721912|gb|ACO17766.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae 70585] Length = 200 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 66/189 (34%), Positives = 100/189 (52%), Gaps = 14/189 (7%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDISMVKKHAS 75 L+ G + +PTETVYGL + + A+ +Y++K+RP A+N I DI K+ Sbjct: 9 LEKGGAVVLPTETVYGLFSKALDEKAVDHVYQLKRRPRDKALNLNIASFEDILHFSKNQ- 67 Query: 76 VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133 P L L + F PGPLT++L+ + + ++L T FR+P T LI G Sbjct: 68 --PAYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIRETG- 122 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 PL PSAN SGQ S + IL + + L D ++ G +STIV++ + KV+ILR Sbjct: 123 PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGD-KVKILR 179 Query: 194 PGGLEIETL 202 G ++ E + Sbjct: 180 QGAIKREDI 188 >gi|149003882|ref|ZP_01828705.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae SP14-BS69] gi|147758112|gb|EDK65116.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae SP14-BS69] Length = 199 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 66/189 (34%), Positives = 100/189 (52%), Gaps = 14/189 (7%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDISMVKKHAS 75 L+ G + +PTETVYGL + + A+ +Y++K+RP A+N I DI K+ Sbjct: 8 LEKGGAVVLPTETVYGLFSKALDEKAVDHVYQLKRRPRDKALNLNIASFEDILHFSKNQ- 66 Query: 76 VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133 P L L + F PGPLT++L+ + + ++L T FR+P T LI G Sbjct: 67 --PAYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIRETG- 121 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 PL PSAN SGQ S + IL + + L D ++ G +STIV++ + KV+ILR Sbjct: 122 PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGD-KVKILR 178 Query: 194 PGGLEIETL 202 G ++ E + Sbjct: 179 QGAIKREDI 187 >gi|330506808|ref|YP_004383236.1| Sua5/YciO/YrdC/YwlC family protein [Methanosaeta concilii GP-6] gi|328927616|gb|AEB67418.1| Sua5/YciO/YrdC/YwlC family protein [Methanosaeta concilii GP-6] Length = 190 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 60/186 (32%), Positives = 96/186 (51%), Gaps = 9/186 (4%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A F+ G + PTETVYGL ++ + A+ R++ IKKRP P+ VS + M+++ A Sbjct: 5 AARFIIGGGVVVYPTETVYGLGANALDEQAVMRVFLIKKRPLSMPISLAVSSLEMLREVA 64 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCGFTKKLIETYGH 133 V + + + PGP+++ LL I P + TA R P + I Sbjct: 65 EVRDDDMDILEDLLPGPVSI---LLRKKSIVPDILTAGSSLVGIRFPDHESALRIIDKAG 121 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 P+ SANR+GQ + + K + S I + L++DGG K ST+++++ K I+R Sbjct: 122 PITSTSANRTGQPAPVSAKEV-SKEIEDRVELVVDGGRCKYCQPSTLLDLENRK---IIR 177 Query: 194 PG-GLE 198 PG GL+ Sbjct: 178 PGAGLD 183 >gi|303260466|ref|ZP_07346434.1| Sua5/YciO/YrdC family protein [Streptococcus pneumoniae SP-BS293] gi|303262823|ref|ZP_07348760.1| Sua5/YciO/YrdC family protein [Streptococcus pneumoniae SP14-BS292] gi|303265293|ref|ZP_07351203.1| Sua5/YciO/YrdC family protein [Streptococcus pneumoniae BS397] gi|303266500|ref|ZP_07352387.1| Sua5/YciO/YrdC family protein [Streptococcus pneumoniae BS457] gi|303268381|ref|ZP_07354177.1| Sua5/YciO/YrdC family protein [Streptococcus pneumoniae BS458] gi|302636021|gb|EFL66519.1| Sua5/YciO/YrdC family protein [Streptococcus pneumoniae SP14-BS292] gi|302638378|gb|EFL68845.1| Sua5/YciO/YrdC family protein [Streptococcus pneumoniae SP-BS293] gi|302642102|gb|EFL72453.1| Sua5/YciO/YrdC family protein [Streptococcus pneumoniae BS458] gi|302643951|gb|EFL74211.1| Sua5/YciO/YrdC family protein [Streptococcus pneumoniae BS457] gi|302645158|gb|EFL75395.1| Sua5/YciO/YrdC family protein [Streptococcus pneumoniae BS397] Length = 209 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 66/189 (34%), Positives = 100/189 (52%), Gaps = 14/189 (7%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDISMVKKHAS 75 L+ G + +PTETVYGL + + A+ +Y++K+RP A+N I DI K+ Sbjct: 18 LENGGAVVLPTETVYGLFAKALDEKAVDHVYQLKRRPRDKALNLNIASFEDILHFSKNQ- 76 Query: 76 VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133 P L L + F PGPLT++L+ + + ++L T FR+P T LI G Sbjct: 77 --PTYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIRETG- 131 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 PL PSAN SGQ S + IL + + L D ++ G +STIV++ + KV+ILR Sbjct: 132 PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGD-KVKILR 188 Query: 194 PGGLEIETL 202 G ++ E + Sbjct: 189 QGAIKREDI 197 >gi|119025466|ref|YP_909311.1| Sua5/YciO/YrdC family protein [Bifidobacterium adolescentis ATCC 15703] gi|154486893|ref|ZP_02028300.1| hypothetical protein BIFADO_00726 [Bifidobacterium adolescentis L2-32] gi|118765050|dbj|BAF39229.1| conserved protein in the Sua5/YciO/YrdC family [Bifidobacterium adolescentis ATCC 15703] gi|154084756|gb|EDN83801.1| hypothetical protein BIFADO_00726 [Bifidobacterium adolescentis L2-32] Length = 220 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 67/214 (31%), Positives = 109/214 (50%), Gaps = 10/214 (4%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +I ++ D + L +A E + G + IPT+TVYG+A D RN AIR+++ K+RP L Sbjct: 3 EICTVNDES-LARAVEIIHDGGLVVIPTDTVYGVACDPRNIEAIRKVFAAKQRPKYKSLQ 61 Query: 62 CHVSDI-SMVKKHASVDPLSLH-LAKLFWPG---PLTLVLDLLSTTDIHPLSTANLKTAC 116 + I SM K H ++ P+ L+ LA +F PG P+ D S + T T Sbjct: 62 VLLPSIESMEKLHLTL-PVPLNRLAAMFMPGAFSPIAEAEDDCSLATLRHDPTTGKATQG 120 Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P I PLA SANRSG+ S V+ + ++ + L +DGG + + Sbjct: 121 VRIPNSAVALRILRATGPLAATSANRSGEESAQTVQEA-ADALGDAVDLYLDGGATPGHV 179 Query: 177 ESTIVNVQCEKK--VRILRPGGLEIETLKRAISV 208 ST+V ++ + ILR G + +++A+++ Sbjct: 180 SSTVVAADPHERDGIAILREGVIRELVIRKALTL 213 >gi|15902970|ref|NP_358520.1| hypothetical protein spr0926 [Streptococcus pneumoniae R6] gi|15458534|gb|AAK99730.1| Conserved hypothetical protein [Streptococcus pneumoniae R6] Length = 203 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 66/189 (34%), Positives = 100/189 (52%), Gaps = 14/189 (7%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDISMVKKHAS 75 L+ G + +PTETVYGL + + A+ +Y++K+RP A+N I DI K+ Sbjct: 12 LEKGGAVVLPTETVYGLFSKALDEKAVDHVYQLKRRPRDKALNLNIASFEDILHFSKNQ- 70 Query: 76 VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133 P L L + F PGPLT++L+ + + ++L T FR+P T LI G Sbjct: 71 --PAYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIRETG- 125 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 PL PSAN SGQ S + IL + + L D ++ G +STIV++ + KV+ILR Sbjct: 126 PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGD-KVKILR 182 Query: 194 PGGLEIETL 202 G ++ E + Sbjct: 183 QGAIKREDI 191 >gi|34763117|ref|ZP_00144087.1| SUA5 protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887215|gb|EAA24316.1| SUA5 protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 217 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 64/190 (33%), Positives = 96/190 (50%), Gaps = 9/190 (4%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP--- 78 G I PT+TVYGL N +I +Y K R +PLI +S + V++ A V Sbjct: 28 GSLIIYPTDTVYGLGAIVTNEQSINNIYLAKSRSFTSPLIALLSSVDKVEEVAYVSDKNK 87 Query: 79 -LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLA 136 L LAK FWPG LT++L I + + T R+P K+IE G LA Sbjct: 88 NLLEKLAKAFWPGALTVILK--RKEHIPSIMVSGGDTIGVRIPNLDLAIKIIELAGGILA 145 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 SAN SG+ + + LS +I ++ ++ID G K+G STI+++ + +ILR G Sbjct: 146 TTSANISGEATPKSYDE-LSEAIKSKVDILIDSGECKLGEASTIIDLTSDVP-KILRKGA 203 Query: 197 LEIETLKRAI 206 + I +++ I Sbjct: 204 ISIGEIEKII 213 >gi|242011385|ref|XP_002426431.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212510536|gb|EEB13693.1| conserved hypothetical protein [Pediculus humanus corporis] Length = 244 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 71/219 (32%), Positives = 106/219 (48%), Gaps = 14/219 (6%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 I+SI + +A A L G IAIPT+T+YG+A ++N +++LYEIKKR PL Sbjct: 18 IISILEVSAASTAANLLFEGKVIAIPTDTIYGIAASTQNNYGLKKLYEIKKRDLNKPLSI 77 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDL--LSTTDIHPLSTANLKTACFRVP 120 VSD S +K L+ L + PGP+T+VL L + ++P N R+P Sbjct: 78 CVSDTSEIKLWGETSHLNERLLEDLLPGPVTIVLKRKGLLNSFVNP----NTDLIGIRIP 133 Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG-ISKIGLE- 177 F + L P+A+ SAN S + S + + + ++ I DGG IS L+ Sbjct: 134 NTNFVQALSRLCTVPIALTSANISFEQSPIEINDFI--HLWPKLDAIFDGGVISNSPLQR 191 Query: 178 --STIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV 214 ST+V++ I+R G I +L YCV Sbjct: 192 AGSTVVDLSEPGHYNIIREGNRNILNFLLLTDAKL-YCV 229 >gi|306825265|ref|ZP_07458607.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432701|gb|EFM35675.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 200 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 61/186 (32%), Positives = 97/186 (52%), Gaps = 8/186 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L+ G + +PTETVYGL + + A+ +Y++K+RP L +V+ + + + P Sbjct: 9 LEKGRAVVLPTETVYGLFAKALDEKAVDHVYKLKRRPREKALNLNVASLEDILHFSKNQP 68 Query: 79 LSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136 L L + F PGPLT++L+ + + + L T FR+P T LI G PL Sbjct: 69 TYLQKLVEAFLPGPLTIILE--ANDRVPYWVNSGLSTVGFRMPSHPITLDLIRETG-PLI 125 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SGQ S IL + + L D ++ G +STI+++ + KV+ILR G Sbjct: 126 GPSANISGQASGVTFAQILEDFDQEVLGLEDDAFLT--GQDSTILDLSGD-KVKILRQGA 182 Query: 197 LEIETL 202 ++ E + Sbjct: 183 IKREDI 188 >gi|319939132|ref|ZP_08013496.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus anginosus 1_2_62CV] gi|319812182|gb|EFW08448.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus anginosus 1_2_62CV] Length = 196 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 64/193 (33%), Positives = 99/193 (51%), Gaps = 8/193 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + K E L +G + +PTETVYGL + + A+ +Y++K RP L +VS + + Sbjct: 1 MDKIEEVLSSGGAVVLPTETVYGLFCKALDEQAVSHVYDLKGRPREKALNLNVSSLEEIY 60 Query: 72 KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + + P L L + F PGPLT++L + + + +KT FRVP T LI Sbjct: 61 QFSKHQPQYLKKLYQAFLPGPLTIILQ--ANEQVPIWVNSGMKTIGFRVPSHPKTLDLIR 118 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 +G PL PSAN SG+ S N + I+ + E+ L I+ G +STI+++ E Sbjct: 119 KFG-PLIGPSANLSGKSSGVNFQQIM-TDFNHEV-LGIEDDAFLTGQDSTILDLSGE-TA 174 Query: 190 RILRPGGLEIETL 202 ILR G + E + Sbjct: 175 YILRQGAVTCEEI 187 >gi|148988474|ref|ZP_01819921.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae SP6-BS73] gi|149019618|ref|ZP_01834937.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae SP23-BS72] gi|147926155|gb|EDK77229.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae SP6-BS73] gi|147930993|gb|EDK81973.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae SP23-BS72] Length = 199 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 66/189 (34%), Positives = 100/189 (52%), Gaps = 14/189 (7%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDISMVKKHAS 75 L+ G + +PTETVYGL + + A+ +Y++K+RP A+N I DI K+ Sbjct: 8 LENGGAVVLPTETVYGLFSKALDEKAVDHVYQLKRRPRDKALNLNIASFEDILHFSKNQ- 66 Query: 76 VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133 P L L + F PGPLT++L+ + + ++L T FR+P T LI G Sbjct: 67 --PAYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIRETG- 121 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 PL PSAN SGQ S + IL + + L D ++ G +STIV++ + KV+ILR Sbjct: 122 PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGD-KVKILR 178 Query: 194 PGGLEIETL 202 G ++ E + Sbjct: 179 QGAIKREDI 187 >gi|256833002|ref|YP_003161729.1| Sua5/YciO/YrdC/YwlC family protein [Jonesia denitrificans DSM 20603] gi|256686533|gb|ACV09426.1| Sua5/YciO/YrdC/YwlC family protein [Jonesia denitrificans DSM 20603] Length = 246 Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 66/218 (30%), Positives = 100/218 (45%), Gaps = 34/218 (15%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 NAL +A L G + +PT+TVYG+ D+ NP+A+ L K R H+ Sbjct: 15 GNALDEAINQLHRGAVVVLPTDTVYGIGADAFNPSAVNALLRAKGRGR------HMPPPV 68 Query: 69 MVKKHASVDPLSLH-------LAKLFWPGPLTLV--------LDLLSTTDIHPLSTANLK 113 +V A++D L+ H LA+ FWPG LTL+ DL T Sbjct: 69 LVASPATIDALATHVPEGARALAERFWPGGLTLICHAQPSLAWDLGETQ----------G 118 Query: 114 TACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173 T RVP T + PLA+ SANR+G + + + + + +D G Sbjct: 119 TVALRVPDHPTALALLQRTGPLAVSSANRTGGEAALTAQQA-RDQLGDSVAVYLDAGEVP 177 Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELE 211 G+ STIV+ E +R++R G + +E L RA++ L+ Sbjct: 178 GGVASTIVDATTE-NLRLIRAGAVSLEEL-RAVTFVLD 213 >gi|254251532|ref|ZP_04944850.1| Sua5/YciO/YrdC/YwlC [Burkholderia dolosa AUO158] gi|124894141|gb|EAY68021.1| Sua5/YciO/YrdC/YwlC [Burkholderia dolosa AUO158] Length = 281 Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 75/266 (28%), Positives = 120/266 (45%), Gaps = 43/266 (16%) Query: 83 LAKLFWPGPLTLVLDLLSTTDIHP----LSTANLKTACFRVPC-GFTKKLIETY-----G 132 L FWPGPLTL+L HP + + R P + L+ + G Sbjct: 25 LIDAFWPGPLTLILKR------HPRIPDAVSGGQDSVGLRCPSHAVAQALLAAFSARRGG 78 Query: 133 HP-LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 H +A PSANR G +S T +H+ + ++DGG S++G+ESTIV++ + Sbjct: 79 HGGVAAPSANRFGHVSPTTAQHVRDE--FGDTVHVLDGGPSEVGIESTIVDL-SRGFPAL 135 Query: 192 LRPGGLEIETLKRAI--SVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREAL 249 LRPG + + + + + L D T+ P++ G LK+HYAPR+ + L P +AL Sbjct: 136 LRPGHVSPQQIADVLGRAPRLPDGSDATA-PRASGTLKAHYAPRTPLALL-----PFDAL 189 Query: 250 IRFGNVPIKNIENAIISLNLSKTGKLKEA---------------AFNLFNYMKIADDSGA 294 + E + S+ G+ +A A +L+ ++ D + Sbjct: 190 EPLLAAAQADGERVALVARASRAGRWAQADGVHFVAAPEDPHAYARDLYGMLRALDRAQV 249 Query: 295 SSIAFSSIPNHGLGIAINNRLERAAA 320 + I +P IA+N+RL RAAA Sbjct: 250 ARILVEKLPETIDWIAVNDRLGRAAA 275 >gi|332708156|ref|ZP_08428149.1| Sua5/YciO/YrdC/YwlC family protein [Lyngbya majuscula 3L] gi|332353058|gb|EGJ32605.1| Sua5/YciO/YrdC/YwlC family protein [Lyngbya majuscula 3L] Length = 214 Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 100/208 (48%), Gaps = 8/208 (3%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +I+ D A KA + L G + T+T+YG+ + I++++E+K R PLI Sbjct: 3 EILPADDQAARNKAVDLLKKGDVVVFSTDTIYGIGASIAKESGIKKIFEVKSRSPDKPLI 62 Query: 62 CHVSDISMVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRV 119 +V+ +++ P S + + WPG ++ + TDI P T+ T R+ Sbjct: 63 IYVASFEQLQQVTQEIPESTIESLRKIWPGAMS---GIFPKTDIVPPFVTSGKDTVAVRI 119 Query: 120 PC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P +L+ G PLA+ SAN SG + + ++ + + +PL++DGG + S Sbjct: 120 PNHPLCLELVRQVGAPLAVTSANVSGMETQKTAPEV-AAQLGERVPLVLDGGPNPEQQPS 178 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAI 206 T+V+ ++LR G L++AI Sbjct: 179 TLVDF-TGSPAQLLREGAWSFSKLRQAI 205 >gi|268325206|emb|CBH38794.1| conserved hypothetical protein, containing yrdC domain [uncultured archaeon] Length = 216 Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 64/193 (33%), Positives = 96/193 (49%), Gaps = 13/193 (6%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + +R A + G I PTETVYGL D+ + TA+R +Y+IK+R P+ VS M Sbjct: 7 SQIRAAIAIIKRGGTIVYPTETVYGLGADALSETAVREVYKIKRRDVTQPISVAVSSFEM 66 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCG-FTKKL 127 + K A +DP + PGP+T+ LL +I P L TA R P ++ Sbjct: 67 LHKVAYIDPGISEIISALLPGPVTV---LLKKKEIVPALLTAESDVLGVRFPDNEIATRI 123 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV---- 183 IE G P+ SAN SG+ T V+ + I + +II G K + ST+V++ Sbjct: 124 IEETG-PITATSANVSGRTPPTCVEEV---EIEFLVDIIIHGTKCKYSMPSTVVDMTTAN 179 Query: 184 QCEKKVRILRPGG 196 + + K++I R G Sbjct: 180 EGKAKIKIKRRGA 192 >gi|24379520|ref|NP_721475.1| hypothetical protein SMU.1083c [Streptococcus mutans UA159] gi|24377461|gb|AAN58781.1|AE014946_6 conserved hypothetical protein [Streptococcus mutans UA159] Length = 196 Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 68/197 (34%), Positives = 97/197 (49%), Gaps = 14/197 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDIS 68 + K E L G + +PTETVYGL + + A+ +Y++KKRP AMN + + DI Sbjct: 1 MDKIEEALREGQAVVLPTETVYGLFAQALSKRAVDNVYDLKKRPREKAMNLNVASLEDIL 60 Query: 69 MVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 K A P L L K F PGPLT+VL + + L T FRVP T Sbjct: 61 AFSKEA---PAYLAELYKAFLPGPLTIVLK--ANEKVPAWINGGLSTVGFRVPAHPQTLA 115 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 I+ G PL PSAN SGQ S + I + + + + D I G +STI+++ Sbjct: 116 YIKQTG-PLIGPSANLSGQASGLVYREIQEAFANRLLGIQDDKAIK--GRDSTILDI-SS 171 Query: 187 KKVRILRPGGLEIETLK 203 + +ILR G L + ++ Sbjct: 172 SRAKILRQGALTQDAIQ 188 >gi|307706538|ref|ZP_07643345.1| yrdC domain protein [Streptococcus mitis SK321] gi|307617993|gb|EFN97153.1| yrdC domain protein [Streptococcus mitis SK321] Length = 199 Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 66/189 (34%), Positives = 99/189 (52%), Gaps = 14/189 (7%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDISMVKKHAS 75 L+ G + +PTETVYGL + + A+ +Y+IK+RP A+N I + DI K+ Sbjct: 8 LENGGAVVLPTETVYGLFAKALDEKAVNHVYQIKRRPRDKALNLNIASLEDILYFSKNQ- 66 Query: 76 VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133 P L L + F PGPLT++L+ + + + L T FR+P T LI G Sbjct: 67 --PTYLQKLVETFLPGPLTIILE--ANDRVPYWVNSGLATVGFRMPSHPTTLDLIRETG- 121 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 PL PSAN SGQ S IL + + L D ++ G +STI+++ + KV+ILR Sbjct: 122 PLIGPSANISGQESGVTFNQILEDFDQEVLGLEDDAFLT--GQDSTILDLSGD-KVKILR 178 Query: 194 PGGLEIETL 202 G ++ E + Sbjct: 179 QGAIKREDI 187 >gi|262066500|ref|ZP_06026112.1| Sua5/YciO/YrdC/YwlC family protein [Fusobacterium periodonticum ATCC 33693] gi|291379804|gb|EFE87322.1| Sua5/YciO/YrdC/YwlC family protein [Fusobacterium periodonticum ATCC 33693] Length = 217 Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 66/210 (31%), Positives = 103/210 (49%), Gaps = 10/210 (4%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 I I+D A E L G I PT+TVYGLA N +I +Y K R +PLI Sbjct: 9 NISDISDDKWTELASE-LKKGSLIIYPTDTVYGLASIVTNEQSINNIYLAKSRSFTSPLI 67 Query: 62 CHVSDISMVKKHASVD----PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 +S + V++ A++ + LA FWPG LT++L I + + T Sbjct: 68 ALLSSVDKVEEVATISDENREILEKLAHTFWPGALTVILK--RKQHIPSIMVSGGDTIGV 125 Query: 118 RVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P K+I+ G LA SAN SG+ + + LS +I + +++DGG K+G Sbjct: 126 RIPNLDLAIKIIDLAGGILATTSANISGEATPKSYNE-LSEAIKSRVDILVDGGECKLGE 184 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAI 206 STI+++ + +ILR G + + + + I Sbjct: 185 ASTIIDLTSDVP-KILRNGAISTDEITKII 213 >gi|15791118|ref|NP_280942.1| hypothetical protein VNG2312C [Halobacterium sp. NRC-1] gi|169236871|ref|YP_001690071.1| hypothetical protein OE4244F [Halobacterium salinarum R1] gi|10581723|gb|AAG20422.1| conserved hypothetical protein [Halobacterium sp. NRC-1] gi|167727937|emb|CAP14725.1| conserved hypothetical protein [Halobacterium salinarum R1] Length = 198 Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 55/173 (31%), Positives = 80/173 (46%), Gaps = 6/173 (3%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 + PTETVYGLA D+ +P AI +E K+RP PL D+ +H +V Sbjct: 20 VVFPTETVYGLAADALDPDAIEAAFEAKRRPREKPLSFAFPDVEAAVEHVAVGETERAFM 79 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSG 144 F PGP+T+V + + + + T RVP + PL SAN SG Sbjct: 80 AEFLPGPVTVVCEKRDS--VPDVLTGGRDRVGVRVPDSEVAVALLERVAPLTATSANVSG 137 Query: 145 QISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197 + S+TN L + + ++D G S G ST+V+V + ILR G + Sbjct: 138 EPSVTN-PAALDPAFRARVDAVVDAGESPGGTGSTVVDV---ARGEILRAGAV 186 >gi|194753758|ref|XP_001959177.1| GF12752 [Drosophila ananassae] gi|190620475|gb|EDV35999.1| GF12752 [Drosophila ananassae] Length = 342 Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 66/201 (32%), Positives = 96/201 (47%), Gaps = 13/201 (6%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 + + D A+ A + L G IA+PT+TVYGLA D+ N AI+RLYEIK R P+ Sbjct: 126 VCPVGDETAIPLARQCLLNGEVIALPTDTVYGLACDANNEQAIQRLYEIKGRDEHKPVAI 185 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 V +I+ +++ LS L PGPLT+V++ S L+ K R+P Sbjct: 186 CVHNIAALRRFGQAAHLSDELLTRLLPGPLTIVIERTSYLSNRFLNPTTSKIG-IRIPDF 244 Query: 122 GFTKKLIETY-GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE--- 177 F L + PLA+ SANRS S V S+ + + D G +IGL Sbjct: 245 QFMSDLCAVWQDQPLALTSANRSSAPSSLQVSEF--QSLWPHLGAVFDAG--RIGLTEER 300 Query: 178 ---STIVNVQCEKKVRILRPG 195 ST++++ I+R G Sbjct: 301 RLASTVIDLATPGYYEIVRAG 321 >gi|196005123|ref|XP_002112428.1| hypothetical protein TRIADDRAFT_25776 [Trichoplax adhaerens] gi|190584469|gb|EDV24538.1| hypothetical protein TRIADDRAFT_25776 [Trichoplax adhaerens] Length = 219 Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 64/206 (31%), Positives = 102/206 (49%), Gaps = 17/206 (8%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 A+ A E L AG IA+PT+T+YG+A ++ P A+ +LY K R NP+ V D++ + Sbjct: 1 AVSAAKESLQAGNIIALPTDTIYGIAALAQLPNAVDKLYNTKGRRRDNPISICVGDVADL 60 Query: 71 KKHASVDP-----LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFT 124 K+ + P + L PGP+TLV ++P N R+P F Sbjct: 61 KRQVHLRPWCSVCVCDALLYDLLPGPVTLVFQRHPV--LNPKLNPNTNLVGIRIPDFPFI 118 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG-ISKIG------LE 177 +++ PLA+ SAN+S +S + S+ ++ +I DGG IS+ G L Sbjct: 119 REVARACDQPLALTSANKSLALSSLAIDEF--QSLWDQLDVIFDGGRISQSGDDQSSRLG 176 Query: 178 STIVNVQCEKKVRILRPGGLEIETLK 203 ST++N+ E +I+R G T+K Sbjct: 177 STVINLSVEGYFKIIRKGSAFENTVK 202 >gi|119715988|ref|YP_922953.1| translation factor SUA5 [Nocardioides sp. JS614] gi|119536649|gb|ABL81266.1| translation factor SUA5 [Nocardioides sp. JS614] Length = 219 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 60/184 (32%), Positives = 93/184 (50%), Gaps = 7/184 (3%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLSLHL 83 + +PT+TVYG+ D+ +P A+R L K R P VS + + A V + L Sbjct: 30 VVLPTDTVYGVGADAFDPAAVRGLLAAKGRGRDLPPPVLVSAATTLDALAVRVPGYARAL 89 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANR 142 + FWPGPLTLV S+ T T R+P ++++E G PLA+ SAN+ Sbjct: 90 VEAFWPGPLTLVCHQQSSLQWDLGDTRG--TVAVRMPDHDVAREILERTG-PLAVSSANK 146 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202 +G + T+ + ++ +I+DGG + G STIV+V + R+LR G L +E L Sbjct: 147 TGMPAATDADQA-EDMLGDDVAVIVDGGPAPGGEASTIVDVTGAQG-RVLRRGALSLERL 204 Query: 203 KRAI 206 + Sbjct: 205 NEVL 208 >gi|294783757|ref|ZP_06749081.1| Sua5/YciO/YrdC/YwlC family protein [Fusobacterium sp. 1_1_41FAA] gi|294480635|gb|EFG28412.1| Sua5/YciO/YrdC/YwlC family protein [Fusobacterium sp. 1_1_41FAA] Length = 217 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 66/210 (31%), Positives = 103/210 (49%), Gaps = 10/210 (4%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 I I+D A E L G I PT+TVYGLA N +I +Y K R +PLI Sbjct: 9 NISDISDDKWTELASE-LKKGSLIIYPTDTVYGLASIVTNEQSINNIYLAKSRSFTSPLI 67 Query: 62 CHVSDISMVKKHASVD----PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 +S + V++ A++ + LA FWPG LT++L I + + T Sbjct: 68 ALLSSVDKVEEVATISDENREILEKLAHAFWPGALTVILK--RKEHIPSIMVSGGDTIGV 125 Query: 118 RVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P K+I+ G LA SAN SG+ + + LS +I + +++DGG K+G Sbjct: 126 RIPNLDLAIKIIDLAGGILATTSANISGEATPKSYNE-LSEAIKSRVDILVDGGECKLGE 184 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAI 206 STI+++ + +ILR G + + + + I Sbjct: 185 ASTIIDLTSDVP-KILRNGAISTDEITKII 213 >gi|72163602|ref|XP_793502.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] gi|115954038|ref|XP_001190640.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] Length = 222 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 57/194 (29%), Positives = 102/194 (52%), Gaps = 10/194 (5%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A L +G I++PT+T+YGLA +++ A+ +LYE+K R P+ ++ I + + Sbjct: 21 AANSLMSGNVISVPTDTIYGLAALAQSAEAVEKLYEVKGRNGNKPIAICINCIEDIHRWG 80 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGH 133 V +S + + PGP+T++ S +++P + + R+P F ++L G Sbjct: 81 YV-TVSDDILRDLLPGPVTVLFRRRS--ELNPEFNPSSELIGLRIPEYPFIQQLAAAVGE 137 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE----STIVNVQCEKKV 189 P+A+ SAN S Q S +VK + +I L+ DGG+ E ST+V++ + Sbjct: 138 PIALTSANPSAQRSTLSVKEF--EDLWSKIDLVFDGGVLSDSEESRQGSTVVDLSVMGRF 195 Query: 190 RILRPGGLEIETLK 203 I+RPG + +T+K Sbjct: 196 SIIRPGSAQEKTVK 209 >gi|183603629|ref|ZP_02716060.2| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae CDC0288-04] gi|183573819|gb|EDT94347.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae CDC0288-04] Length = 200 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 66/189 (34%), Positives = 100/189 (52%), Gaps = 14/189 (7%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDISMVKKHAS 75 L+ G + +PTETVYGL + + A+ +Y++K+RP A+N I DI K+ Sbjct: 9 LENGGAVILPTETVYGLFSKALDEKAVDHVYQLKRRPRDKALNLNIASFEDILHFSKNQ- 67 Query: 76 VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133 P L L + F PGPLT++L+ + + ++L T FR+P T LI G Sbjct: 68 --PAYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIRETG- 122 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 PL PSAN SGQ S + IL + + L D ++ G +STIV++ + KV+ILR Sbjct: 123 PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGD-KVKILR 179 Query: 194 PGGLEIETL 202 G ++ E + Sbjct: 180 QGAIKREDI 188 >gi|313848034|emb|CBY17032.1| hypothetical protein Cpsi_5031 [Chlamydophila psittaci RD1] Length = 292 Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 67/207 (32%), Positives = 104/207 (50%), Gaps = 18/207 (8%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 LR+A ++LD G IA PT+TVYGL V P A ++Y++K R L+ +V+ I ++ Sbjct: 14 LRQAADYLDQGKVIAFPTDTVYGLGVALNYPNAEEKIYDLKHRDQGKSLVVYVNTIEDIE 73 Query: 72 KHASVDPLSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGFTKKL 127 K + LS H KL F PGPLTL++D H + + FR+ KL Sbjct: 74 KFSGCT-LSTHALKLSQKFLPGPLTLLVD-------HKNPRFHQEKLGFRILSIPIVNKL 125 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I+ G PL SAN S K +L C+E +I G S GLEST+++ Sbjct: 126 IDLAG-PLLGTSANISNFPPAITSKEVL-EDFCQEDICVIPGCCS-YGLESTVISAD--- 179 Query: 188 KVRILRPGGLEIETLKRAISVELEYCV 214 ++I R G + + ++ + +++ C+ Sbjct: 180 PLKIYREGMIPHQVIEDVVGEKIDACL 206 >gi|170291088|ref|YP_001737904.1| Sua5/YciO/YrdC/YwlC family protein [Candidatus Korarchaeum cryptofilum OPF8] gi|170175168|gb|ACB08221.1| Sua5/YciO/YrdC/YwlC family protein [Candidatus Korarchaeum cryptofilum OPF8] Length = 209 Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 52/137 (37%), Positives = 72/137 (52%), Gaps = 14/137 (10%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +ALRK G I PT+TVYGL D+ N A+RR+YE+K RP L VSDI M Sbjct: 19 DALRK-------GKLIIYPTDTVYGLGADAENIDAVRRVYEVKGRPEEKRLTIAVSDIDM 71 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTT-DIHPLSTANLKTACFRVP-CGFTKKL 127 +++A VD +S L + F PG +T +L S DI N + R+P ++ Sbjct: 72 AERYAVVDEISRRLMEKFLPGKVTFILKKTSRVPDI-----VNPEAIGIRIPNIPIILRI 126 Query: 128 IETYGHPLAIPSANRSG 144 I +G + SAN+SG Sbjct: 127 IREFGGAITATSANKSG 143 >gi|320528641|ref|ZP_08029794.1| Sua5/YciO/YrdC/YwlC family protein [Solobacterium moorei F0204] gi|320131007|gb|EFW23584.1| Sua5/YciO/YrdC/YwlC family protein [Solobacterium moorei F0204] Length = 199 Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 57/180 (31%), Positives = 99/180 (55%), Gaps = 10/180 (5%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 I++PT+TVYG+ + A L +K+RP +D++ +++ A V+ + + Sbjct: 22 ISVPTDTVYGVCSQVFSHQAEENLRNVKRRPLTKAFPVMCADLAQIQEIAEVNERAKKVI 81 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPLAIPSANRS 143 + F PGP+T++ L D LS NL T R+ T K+I+ G P+ + SAN+S Sbjct: 82 EGFMPGPITVI---LKRKDGVNLSQENLDTIAIRMATSNTLAKIIKGLGRPIFMTSANQS 138 Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK-VRILRPGGLEIETL 202 G+ + T++ I S C ++ +++G +S G STIV+ C KK + ILRPG + ++ + Sbjct: 139 GEPTCTSLDEIEKS--CPDLDGMVEGDVS-FGEASTIVD--CTKKELAILRPGPITMQDI 193 >gi|268326242|emb|CBH39830.1| conserved hypothetical protein, containing yrdC domain [uncultured archaeon] Length = 234 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 64/193 (33%), Positives = 96/193 (49%), Gaps = 13/193 (6%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + +R A + G I PTETVYGL D+ + TA+R++Y+IK+R P+ VS M Sbjct: 25 SQIRAAIAIIKRGGTIVYPTETVYGLGADALSETAVRKVYKIKRRDVSQPISVAVSSFEM 84 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCG-FTKKL 127 + K A DP + PGP+T+ LL +I P L TA R P ++ Sbjct: 85 LHKVAYTDPGISEILFALLPGPVTV---LLKKKEIVPALLTAESDVLGVRFPDNEIATRI 141 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV---- 183 IE G P+ SAN SG+ T V+ + I + +II G K + ST+V++ Sbjct: 142 IEETG-PITATSANVSGRTPPTCVEEV---EIKFLVDIIIHGSKCKYSMPSTVVDMTTAN 197 Query: 184 QCEKKVRILRPGG 196 + + K++I R G Sbjct: 198 EGKAKIKIKRRGA 210 >gi|332075636|gb|EGI86104.1| yrdC domain protein [Streptococcus pneumoniae GA17545] Length = 199 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 64/185 (34%), Positives = 97/185 (52%), Gaps = 14/185 (7%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDISMVKKHAS 75 L+ G + +PTETVYGL + + A+ +Y++K+RP A+N I + DI K+ Sbjct: 8 LENGRAVVLPTETVYGLFAKALDEKAVDHVYQLKRRPRDKALNLNIASLEDILHFSKNQ- 66 Query: 76 VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133 P L L + F PGPLT++L+ + + + L T FR+P T LI G Sbjct: 67 --PAYLQKLVETFLPGPLTIILE--ANDRVPYWVNSGLATVGFRMPSHPITLDLIRVTG- 121 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 PL PSAN SGQ S IL + + L D ++ G +STI+++ + KV+ILR Sbjct: 122 PLIGPSANISGQASGVTFNQILKDFDQEVLGLEDDAFLT--GQDSTIIDLSGD-KVKILR 178 Query: 194 PGGLE 198 G ++ Sbjct: 179 QGAIK 183 >gi|111658251|ref|ZP_01408943.1| hypothetical protein SpneT_02000565 [Streptococcus pneumoniae TIGR4] Length = 200 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 64/189 (33%), Positives = 99/189 (52%), Gaps = 14/189 (7%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR---PAMNPLICHVSDISMVKKHAS 75 L+ G + +PTETVYGL + + A+ +Y++K+R A+N + + DI K+ Sbjct: 9 LENGGAVVLPTETVYGLFAKALDEKAVDHVYQLKRRRRDKALNLNVASLEDILYFSKNQ- 67 Query: 76 VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133 P L L ++F PGPLT++L+ + + + L T FR+P T LI G Sbjct: 68 --PTYLQKLVEIFLPGPLTIILE--ANDRVPYWVNSGLATVGFRMPSHPITLDLIRETG- 122 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 PL PSAN SGQ S IL + + L D ++ G +STI+N+ + KV+ILR Sbjct: 123 PLIGPSANISGQASGVTFNQILEDFDQEVLGLEDDAFLT--GQDSTILNLSGD-KVKILR 179 Query: 194 PGGLEIETL 202 G ++ E + Sbjct: 180 QGAIKREDI 188 >gi|126330406|ref|XP_001380961.1| PREDICTED: similar to Ischemia/reperfusion inducible protein [Monodelphis domestica] Length = 394 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 64/198 (32%), Positives = 99/198 (50%), Gaps = 20/198 (10%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S AL A L AG +A+PT+T+YG+A + A+ +Y +K R PL + ++ Sbjct: 182 SEALTAAVTALRAGGLVAVPTDTLYGVACSACCSAALGAVYSLKGRSQTKPLAVCLGGVA 241 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVPC-GFTK 125 + K+ V + L + PGP+TLV++ D++P + R+P F + Sbjct: 242 DIYKYCQVR-VPRELLEDLLPGPVTLVMERSRELNKDLNPFT----PLVGIRIPDHAFMR 296 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--------LE 177 L + + PLA+ SAN S Q S NVK + ++ L+IDGG IG L Sbjct: 297 DLAQAFSGPLALTSANISSQPSSLNVKEF--QDLWPQLSLVIDGG--PIGDVKSPECRLG 352 Query: 178 STIVNVQCEKKVRILRPG 195 ST+V++ K RI+RPG Sbjct: 353 STVVDLSVPGKYRIIRPG 370 >gi|145340914|ref|XP_001415562.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144575785|gb|ABO93854.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 195 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 64/201 (31%), Positives = 93/201 (46%), Gaps = 30/201 (14%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A L G IA+PT+T+YG A + N A+RRLYEIK R A PL V D+ V + Sbjct: 1 AAAALRRGGVIAVPTDTIYGFAASAANGDAVRRLYEIKGRRAGVPLAIAVGDVRDVGTYG 60 Query: 75 SVDPLSLHLAKLFWPGPLTLVL------DLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 L PGP T++L +T +++P + RVP F +++ Sbjct: 61 DDGHLREGALARLLPGPTTVLLRRRRGDAGRATPELNP----GVDLIGIRVPAHDFVREV 116 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILS-SSICKEIPLIIDGG-ISKIGLESTIVNV-- 183 +G +A+ SANRSG+ S T + C E + DGG I L STIV++ Sbjct: 117 CRAHGGAIALTSANRSGETSATAAEEFAELWDACDE---VFDGGAIPAKRLGSTIVDLSS 173 Query: 184 ------------QCEKKVRIL 192 +C++ VR+L Sbjct: 174 RANDFAIVRAGERCDELVRVL 194 >gi|15900893|ref|NP_345497.1| Sua5/YciO/YrdC family protein [Streptococcus pneumoniae TIGR4] gi|14972495|gb|AAK75137.1| Sua5/YciO/YrdC family protein [Streptococcus pneumoniae TIGR4] Length = 199 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 64/189 (33%), Positives = 99/189 (52%), Gaps = 14/189 (7%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR---PAMNPLICHVSDISMVKKHAS 75 L+ G + +PTETVYGL + + A+ +Y++K+R A+N + + DI K+ Sbjct: 8 LENGGAVVLPTETVYGLFAKALDEKAVDHVYQLKRRRRDKALNLNVASLEDILYFSKNQ- 66 Query: 76 VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133 P L L ++F PGPLT++L+ + + + L T FR+P T LI G Sbjct: 67 --PTYLQKLVEIFLPGPLTIILE--ANDRVPYWVNSGLATVGFRMPSHPITLDLIRETG- 121 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 PL PSAN SGQ S IL + + L D ++ G +STI+N+ + KV+ILR Sbjct: 122 PLIGPSANISGQASGVTFNQILEDFDQEVLGLEDDAFLT--GQDSTILNLSGD-KVKILR 178 Query: 194 PGGLEIETL 202 G ++ E + Sbjct: 179 QGAIKREDI 187 >gi|58696928|ref|ZP_00372427.1| Sua5/YciO/YrdC/YwlC family protein [Wolbachia endosymbiont of Drosophila simulans] gi|225630533|ref|YP_002727324.1| Sua5/YciO/YrdC/YwlC family protein [Wolbachia sp. wRi] gi|58536842|gb|EAL60054.1| Sua5/YciO/YrdC/YwlC family protein [Wolbachia endosymbiont of Drosophila simulans] gi|225592514|gb|ACN95533.1| Sua5/YciO/YrdC/YwlC family protein [Wolbachia sp. wRi] Length = 195 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 64/199 (32%), Positives = 96/199 (48%), Gaps = 29/199 (14%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81 L + PTETVY LA ++ + +I ++Y+IKKR PL VSDI + K A V + Sbjct: 12 NLLVCFPTETVYALACNALDNESIGKIYQIKKRSQNKPLSIFVSDIYNLTKIAKVKERYI 71 Query: 82 HLAKLFWPGPLTLVLDLLSTTDIHPLSTAN-LKTACFRVPCGFTKKLIETYGHPLAIP-- 138 L F PGP+T +L PL N L F+ G I HP+AI Sbjct: 72 DLINHFSPGPITYIL---------PLKNNNILPNEFFKDSIG-----IRIPEHPIAISIL 117 Query: 139 ----------SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 S N SG+ S+ I SI + + ++I+ G+ESTI+++ E K Sbjct: 118 NKLKVPIVATSTNISGKESVCKANDI-PQSIKQHLSVVIEDDELVSGIESTIIDL-TEDK 175 Query: 189 VRILRPGGLEIETLKRAIS 207 +++LR G + ++T+ A S Sbjct: 176 IKVLREGAISLQTVNNAFS 194 >gi|307704779|ref|ZP_07641675.1| yrdC domain protein [Streptococcus mitis SK597] gi|307621688|gb|EFO00729.1| yrdC domain protein [Streptococcus mitis SK597] Length = 199 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 60/186 (32%), Positives = 97/186 (52%), Gaps = 8/186 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L+ G + +PTETVYGL + + A+ +Y++K+RP L ++ + + + P Sbjct: 8 LENGGAVVLPTETVYGLFAKALDEKAVNHVYQLKRRPRDKALNLNIDSLEDILHFSKNQP 67 Query: 79 LSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136 L L + F PGPLT++L+ + + + L T FR+P T LI G PL Sbjct: 68 TYLQKLVETFLPGPLTIILE--ANDRVPYWVNSGLATVGFRMPSHPITLDLIRETG-PLI 124 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SGQ S + IL + + L D ++ G +STI+++ + KV+ILR G Sbjct: 125 GPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTILDLSGD-KVKILRQGS 181 Query: 197 LEIETL 202 ++ E + Sbjct: 182 IKREDI 187 >gi|42520658|ref|NP_966573.1| Sua5/YciO/YrdC/YwlC family protein [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410398|gb|AAS14507.1| Sua5/YciO/YrdC/YwlC family protein [Wolbachia endosymbiont of Drosophila melanogaster] Length = 195 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 64/199 (32%), Positives = 96/199 (48%), Gaps = 29/199 (14%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81 L + PTETVY LA ++ + +I ++Y+IKKR PL VSDI + K A V + Sbjct: 12 NLLVCFPTETVYALACNALDNESIGKIYQIKKRSQNKPLSIFVSDIYNLTKIAKVKERYI 71 Query: 82 HLAKLFWPGPLTLVLDLLSTTDIHPLSTAN-LKTACFRVPCGFTKKLIETYGHPLAIP-- 138 L F PGP+T +L PL N L F+ G I HP+AI Sbjct: 72 DLINHFSPGPITYIL---------PLKNNNMLPNEFFKDSIG-----IRIPEHPIAISIL 117 Query: 139 ----------SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 S N SG+ S+ I SI + + ++I+ G+ESTI+++ E K Sbjct: 118 NKLKVPIVATSTNISGKESVCKANDI-PQSIKQHLSVVIEDDELVSGIESTIIDL-TEDK 175 Query: 189 VRILRPGGLEIETLKRAIS 207 +++LR G + ++T+ A S Sbjct: 176 IKVLREGAISLQTVNNAFS 194 >gi|315613127|ref|ZP_07888037.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus sanguinis ATCC 49296] gi|315314689|gb|EFU62731.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus sanguinis ATCC 49296] Length = 200 Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 60/186 (32%), Positives = 97/186 (52%), Gaps = 8/186 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L+ G + +PTETVYGL + + A+ +Y++K+RP L +V+ + + + P Sbjct: 9 LEKGGAVVLPTETVYGLFAKALDEKAVDHVYQLKRRPREKALNLNVASLEDILHFSKNQP 68 Query: 79 LSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136 L L + F PGPLT++L+ + + + + T FR+P T LI G PL Sbjct: 69 TYLQKLVEAFLPGPLTIILE--ANDRVPYWVNSGIATVGFRMPSHPITLDLIRETG-PLI 125 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SGQ S IL + + L D ++ G +STI+++ + KV+ILR G Sbjct: 126 GPSANISGQASGVTFAQILEDFDQEVLGLEDDAFLT--GQDSTILDLSGD-KVKILRQGA 182 Query: 197 LEIETL 202 ++ E + Sbjct: 183 IKREDI 188 >gi|268532948|ref|XP_002631602.1| Hypothetical protein CBG20783 [Caenorhabditis briggsae] gi|187023055|emb|CAP37734.1| hypothetical protein CBG_20783 [Caenorhabditis briggsae AF16] Length = 216 Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 75/192 (39%), Positives = 104/192 (54%), Gaps = 18/192 (9%) Query: 18 FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL-ICHVSDISMVKKHASV 76 FL G+ +A+PT+T+YG++ + P + RLY +K+RP PL I S SM K S Sbjct: 26 FLRGGI-VALPTDTLYGIS--TLLPFS-DRLYALKQRPFEKPLGIFLPSPTSM--KLVSK 79 Query: 77 DPLSLHLAKLFWPGPLTLVLDLLST--TDIHPLSTANLKTACFRVP-CGFTKKLIETYGH 133 +S LA PGP+TL+ + L T + +P AN+ AC RVP C + G Sbjct: 80 QTISDELANCLLPGPVTLMFERLPTLPAEFNP-GVANV--AC-RVPDCPIVSMICRKLGQ 135 Query: 134 PLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGG-ISKIGLESTIVNVQCEKKVRI 191 PLA SAN SG ++ T++ H + I LI+D G I G STIV++ E K RI Sbjct: 136 PLAQTSANVSGSPLNPTSIDHF--KDLQPYIDLILDNGQIVSTGEGSTIVDLTVESKFRI 193 Query: 192 LRPGGLEIETLK 203 +R G E ET+K Sbjct: 194 VRSGCAEKETMK 205 >gi|237739267|ref|ZP_04569748.1| SUA5 protein [Fusobacterium sp. 2_1_31] gi|229422875|gb|EEO37922.1| SUA5 protein [Fusobacterium sp. 2_1_31] Length = 217 Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 65/210 (30%), Positives = 103/210 (49%), Gaps = 10/210 (4%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 I I+D A E + L I PT+TVYGLA N +I +Y K R +PLI Sbjct: 9 NISDISDDKWTELADELKEGSL-IIYPTDTVYGLASIVTNEQSINNIYLAKSRSFTSPLI 67 Query: 62 CHVSDISMVKKHASVDPLSLH----LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 +S + V++ A++ + LA FWPG LT++L I + + T Sbjct: 68 ALLSSVDKVEEVATISDENREILEKLAHAFWPGALTVILK--RKEHIPNIMVSGGDTIGV 125 Query: 118 RVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P K+I+ G LA SAN SG+ + + LS +I + +++DGG K+G Sbjct: 126 RIPNLDLAIKIIDLAGGILATTSANISGEATPKSYNE-LSEAIKSRVDILVDGGECKLGE 184 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAI 206 STI+++ + +ILR G + + + + I Sbjct: 185 ASTIIDLTSDVP-KILRNGAISTDEITKII 213 >gi|262038853|ref|ZP_06012200.1| Sua5/YciO/YrdC/YwlC family protein [Leptotrichia goodfellowii F0264] gi|261747104|gb|EEY34596.1| Sua5/YciO/YrdC/YwlC family protein [Leptotrichia goodfellowii F0264] Length = 201 Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 61/203 (30%), Positives = 100/203 (49%), Gaps = 10/203 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +N ++K E L G PT+TVYG+ R + I ++YEIKKR +I + DIS Sbjct: 2 NNEIKKVTEILLEGGVAVFPTDTVYGIGALPREKSVI-KIYEIKKRDFSKKIIALIEDIS 60 Query: 69 MVKKHASVDPLSLH----LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 M+ + + P ++ + K FWPG LT++ + T+ L+T R+P T Sbjct: 61 MLNRIINETPENIEKISPVLKKFWPGELTVIFK--ANTEFTGKFDRELETIGVRIPKNET 118 Query: 125 K-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 +I+ G L SAN SG+ ++T + LS I ++ +I G STI+ Sbjct: 119 ALSIIKNTGGILLTTSANISGEEAVTELDK-LSKEIREKADYVIGDDSKLTGKPSTIIKY 177 Query: 184 QCEKKVRILRPGGLEIETLKRAI 206 + + +LR G + E +K+A+ Sbjct: 178 EN-GNIELLRKGNISSEDIKKAM 199 >gi|28493400|ref|NP_787561.1| hypothetical protein TWT433 [Tropheryma whipplei str. Twist] gi|28572489|ref|NP_789269.1| hypothetical protein TW335 [Tropheryma whipplei TW08/27] gi|28410621|emb|CAD67007.1| conserved hypothetical protein [Tropheryma whipplei TW08/27] gi|28476441|gb|AAO44530.1| unknown [Tropheryma whipplei str. Twist] Length = 225 Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 77/229 (33%), Positives = 113/229 (49%), Gaps = 47/229 (20%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +A R A + +G I +PT+TVYGLA D+ P A+ RL EIK R A P++ S+ Sbjct: 13 SAFRAAKRSISSGGVIVVPTDTVYGLAADAFQPEAVGRLLEIKGRTAAPPVLVG----SI 68 Query: 70 VKKHASVDPL---SLHLAKLFWPGPLTLVL----DLLSTTDIHPLSTANLKTACFRVPC- 121 A VD L +L LAK FWPGPLTLVL LL T R+P Sbjct: 69 ETFQAIVDVLPEPALALAKRFWPGPLTLVLRTRPGLLWG-----------DTVAVRIPRH 117 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG----LE 177 F +L++ G PLA+ SAN SG+ +V+ S+ + + IDG +I + Sbjct: 118 SFLLQLLDEIG-PLAVSSANISGRRPALSVRSA-RGSLRDKPAMYIDG--DRIDNPDRVP 173 Query: 178 STIVNVQ--CEKKV--------------RILRPGGLEIETLKRAISVEL 210 S+IV++ CE R+LR G + ++L++A+ ++L Sbjct: 174 SSIVDLTDFCEDSAGRIFEGVSPKTAQPRLLRDGAIPWKSLEKAMQMKL 222 >gi|156399845|ref|XP_001638711.1| predicted protein [Nematostella vectensis] gi|156225834|gb|EDO46648.1| predicted protein [Nematostella vectensis] Length = 224 Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 61/196 (31%), Positives = 98/196 (50%), Gaps = 10/196 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + A L G IA+PT+T+YG+A +++ A+++LYEIK R P+ V +I VK Sbjct: 20 IHAAVASLKLGHVIALPTDTIYGIAALTQSCNAVQKLYEIKGRHQEKPVAIAVGNIEDVK 79 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIET 130 + V L L PGP+TLV + T +++P R+P F +KL + Sbjct: 80 RWGKVTVSDDILTDLL-PGPVTLVFE--RTPELNPSLNPGTTLIGIRIPNHHFVRKLAKA 136 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE----STIVNVQCE 186 P+A+ SAN+S +S V+ S+ + L++DGG E ST++N+ Sbjct: 137 CAEPIALTSANQSSAMSSLKVEEF--KSLWPHLDLVVDGGPVGDSPECRQGSTVINLSVP 194 Query: 187 KKVRILRPGGLEIETL 202 + I+R G +TL Sbjct: 195 GQFSIIREGSAYQQTL 210 >gi|169351563|ref|ZP_02868501.1| hypothetical protein CLOSPI_02343 [Clostridium spiroforme DSM 1552] gi|169291785|gb|EDS73918.1| hypothetical protein CLOSPI_02343 [Clostridium spiroforme DSM 1552] Length = 200 Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 59/194 (30%), Positives = 104/194 (53%), Gaps = 9/194 (4%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + + NA+ + + + +A PTETV+GL + + A+ LYE+K R + ++ Sbjct: 5 LVEKNAIEEVAKLVSDNQVVAFPTETVFGLGIKFGSYEALNSLYELKHRDRHKAISMMIN 64 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 + ++K+A V+ + + K F PG +T++L D + TA+L T R+P F Sbjct: 65 NPKDIEKYAYVNDQARKIIKSFMPGMVTIILKKREFIDDY--FTASLDTIGIRIPDDKFV 122 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG-GISKIGLESTIVNV 183 L+E G P+ + SAN SG+ ++ + K ++ +IPLI+ G +SK STI+++ Sbjct: 123 LSLLEKTG-PMLVTSANLSGEDTLVDDKAVM-KVFSGKIPLIVKGESVSKKA--STIIDL 178 Query: 184 QCEKKVRILRPGGL 197 + KV ILR G + Sbjct: 179 -SKGKVEILRVGDI 191 >gi|312863566|ref|ZP_07723804.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus vestibularis F0396] gi|322517015|ref|ZP_08069904.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus vestibularis ATCC 49124] gi|311101102|gb|EFQ59307.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus vestibularis F0396] gi|322124432|gb|EFX95929.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus vestibularis ATCC 49124] Length = 201 Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 61/196 (31%), Positives = 100/196 (51%), Gaps = 8/196 (4%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 ++ E LD G I +PTETVYGL + + +A+ +YE+K RP + +V+ + Sbjct: 6 KQLRESLDNGEAIVLPTETVYGLFAKAMDESAVNHVYELKNRPIDKAMNLNVASYEDILS 65 Query: 73 HASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 ++ P L L F PGPLT++L + + + L T FR+P T++LI+ Sbjct: 66 YSKEQPKYLKQLYDAFLPGPLTIILK--ANDQVPRWINSGLATVGFRLPNHPVTRELIQA 123 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G PL PSAN+SG+ S + I + + D + +G++STI+++ R Sbjct: 124 EG-PLIGPSANKSGKESGRHFDDIRAQFDFQVTGYRDDNAL--LGVDSTILDLSV-SPAR 179 Query: 191 ILRPGGLEIETLKRAI 206 ILR G + + L A+ Sbjct: 180 ILRQGKITKDDLLAAL 195 >gi|68074035|ref|XP_678932.1| hypothetical protein [Plasmodium berghei strain ANKA] gi|56499550|emb|CAH97465.1| conserved hypothetical protein [Plasmodium berghei] Length = 522 Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 55/180 (30%), Positives = 94/180 (52%), Gaps = 8/180 (4%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I + N + E + I PTETVYGL +S + +++ ++++K RP +P+I HV Sbjct: 11 IKNDNVKKMLKEHIKKNNLIGFPTETVYGLGGNSLSEISLKNIFKMKNRPISDPIISHVY 70 Query: 66 DISMVKK---HASVDPLSLHLAKL-FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 DI+ H ++ +++ + F PGPL+++ + + + TA+ + R+P Sbjct: 71 DIAQAFDQLYHINMYEKYIYILNMKFSPGPLSIIAK--AKEHLPLILTAHTQFCAVRIPN 128 Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 K++I+ P+A PSAN+ IS TN H+ + I LI D G IG+EST+ Sbjct: 129 NKIAKEIIKICDTPIAAPSANKFQHISPTNSLHVYEEFKDENI-LIFDDGQCDIGIESTV 187 >gi|82596901|ref|XP_726453.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL] gi|23481870|gb|EAA18018.1| hypothetical protein [Plasmodium yoelii yoelii] Length = 519 Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 56/181 (30%), Positives = 96/181 (53%), Gaps = 9/181 (4%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I + N + E ++ I PTETVYGL +S + ++R ++++K RP +P+I HV Sbjct: 11 IKNDNVKKMLKEHIEKNNLIGFPTETVYGLGGNSLSEISLRNIFKMKNRPISDPIISHVY 70 Query: 66 DISMVKK---HASV-DPLSLHLAKL-FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 DI+ H ++ + +++ + F PGPL+++ + + + TA+ + R+P Sbjct: 71 DIAQAFDQLYHINIYEKYIIYILTMNFSPGPLSIIAK--AKKHLPLILTAHTQFCAVRIP 128 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 +K+I+ P+A PSAN+ IS TN H+ + I LI D G IG+EST Sbjct: 129 NNKIARKIIKICNTPIAAPSANKFQHISPTNSLHVYDEFKDENI-LIFDDGQCDIGIEST 187 Query: 180 I 180 + Sbjct: 188 V 188 >gi|30909242|gb|AAP37053.1| ischemia/reperfusion inducible protein transcript variant 1 [Homo sapiens] gi|30909244|gb|AAP37054.1| ischemia/reperfusion inducible protein transcript variant 2 [Homo sapiens] gi|114325461|gb|AAH68057.1| YRDC protein [Homo sapiens] Length = 270 Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 73/235 (31%), Positives = 112/235 (47%), Gaps = 40/235 (17%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ALR A L AG +A+PT+T+YGLA + A+R +Y +K R PL + ++ Sbjct: 58 TEALRAAVAELRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVA 117 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVPC-GFTK 125 V ++ V + L K PGP+TLV++ D++P + R+P F + Sbjct: 118 DVYRYCRVR-VPEGLLKDLLPGPVTLVMERSEELNKDLNPFT----PLVGIRIPDHAFMQ 172 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--------LE 177 L + + PLA+ SAN S Q S NV+ + ++ L+IDGG +IG L Sbjct: 173 DLAQMFEGPLALTSANLSSQASSLNVEEF--QDLWPQLSLVIDGG--QIGDGQSPECRLG 228 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTP---QSPGMLKSH 229 ST+V++ K I+RPG C E++T Q G+L SH Sbjct: 229 STVVDLSVPGKFGIIRPG-----------------CALESTTAILQQKYGLLPSH 266 >gi|116511390|ref|YP_808606.1| translation factor SUA5 [Lactococcus lactis subsp. cremoris SK11] gi|116107044|gb|ABJ72184.1| translation factor SUA5 [Lactococcus lactis subsp. cremoris SK11] Length = 306 Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 66/197 (33%), Positives = 109/197 (55%), Gaps = 15/197 (7%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 +A + L G + +PTETVYGL D+ N A+++LY +K RP L +VS + K+ Sbjct: 111 RAVKALKNGQLVVLPTETVYGLFADAMNEQAVQKLYSVKGRPTEKALNMNVSSFEDILKY 170 Query: 74 ASVDPLSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129 S++P +L K+ F PGPLT++L+ +++++ T FR+P T+K+I+ Sbjct: 171 -SINPPD-YLGKIVDAFLPGPLTIILE--ASSEVPEWIHIGKSTVGFRMPNIAVTQKVIK 226 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII-DGGISKIGLESTIVNVQCEKK 188 G L PSAN +G S + LS I + + + D I GL++TI+++ EK Sbjct: 227 EVG-VLVGPSANLTGSKSPSFFAD-LSQEILENAAVAVQDDNI--YGLDTTIIDLTQEKP 282 Query: 189 VRILRPGGL-EIETLKR 204 ++LR G + + E LK+ Sbjct: 283 -KLLRQGAVTKAELLKK 298 >gi|290580479|ref|YP_003484871.1| hypothetical protein SmuNN2025_0953 [Streptococcus mutans NN2025] gi|254997378|dbj|BAH87979.1| hypothetical protein [Streptococcus mutans NN2025] Length = 196 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 68/197 (34%), Positives = 96/197 (48%), Gaps = 14/197 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDIS 68 + K E L G + +PTETVYGL + + A+ +Y +KKRP AMN + + DI Sbjct: 1 MDKIEEALREGQAVVLPTETVYGLFAQALSKRAVDNVYALKKRPREKAMNLNVASLEDIL 60 Query: 69 MVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 K A P L L K F PGPLT+VL + + L T FRVP T Sbjct: 61 AFSKEA---PAYLAELYKAFLPGPLTIVLK--ANEKVPAWINGGLSTVGFRVPAHPQTLA 115 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 I+ G PL PSAN SGQ S + I + + + + D I G +STI+++ Sbjct: 116 YIKQTG-PLIGPSANLSGQASGLVYREIQEAFANRLLGIQDDKAIK--GRDSTILDI-SS 171 Query: 187 KKVRILRPGGLEIETLK 203 + +ILR G L + ++ Sbjct: 172 SRAKILRQGALTQDAIQ 188 >gi|303232598|ref|ZP_07319284.1| protein-(glutamine-N5) methyltransferase, release factor-specific [Atopobium vaginae PB189-T1-4] gi|302481385|gb|EFL44459.1| protein-(glutamine-N5) methyltransferase, release factor-specific [Atopobium vaginae PB189-T1-4] Length = 546 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 66/207 (31%), Positives = 98/207 (47%), Gaps = 8/207 (3%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGL--AVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 D +++AC+ L I +PT++VYG+ A NP +RR ++IK R L V+ Sbjct: 344 DPAVVKRACDCLANQGVIIVPTDSVYGIGCAATKDNP-GLRRTFDIKHRDYAQTLPWLVA 402 Query: 66 DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123 D S + + V + LA FWPG LTLV+ + A T R+P Sbjct: 403 DASALDTYGIDVPTWAYALAHEFWPGALTLVVKANDKVGVE-YQHAATHTIALRLPNSEV 461 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + L G PLAI SAN G + + I + E+ L +D G + IG STIV+ Sbjct: 462 VRALARGCGCPLAITSANTHGSSAAVSGDTI-EPRLLDEVDLALDAGSAPIGTASTIVDC 520 Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL 210 E+ ++LR G + E + R +S L Sbjct: 521 THEEP-KLLRVGAISPEDIYRVVSSAL 546 >gi|307703896|ref|ZP_07640837.1| yrdC domain protein [Streptococcus oralis ATCC 35037] gi|307622731|gb|EFO01727.1| yrdC domain protein [Streptococcus oralis ATCC 35037] Length = 199 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 64/189 (33%), Positives = 99/189 (52%), Gaps = 14/189 (7%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDISMVKKHAS 75 L+ G + +PTETVYGL + + A+ +Y++K+RP A+N + + DI K+ Sbjct: 8 LEKGGAVVLPTETVYGLFAKALDEKAVDHVYKLKRRPRDKALNLNVAFLEDILHFSKNQ- 66 Query: 76 VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133 P L L + F PGPLT++L+ + + + L T FR+P T LI G Sbjct: 67 --PTYLQKLVEAFLPGPLTIILE--ANDRVPYWVNSGLATVGFRMPSHPITLDLIRETG- 121 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 PL PSAN SGQ S IL + + L D ++ G +STI+++ + KV+ILR Sbjct: 122 PLIGPSANISGQASGVTFAQILEDFDQEVLGLEDDAFLT--GQDSTILDLSGD-KVKILR 178 Query: 194 PGGLEIETL 202 G ++ E + Sbjct: 179 QGAIKREDI 187 >gi|293365354|ref|ZP_06612071.1| Sua5/YciO/YrdC family protein [Streptococcus oralis ATCC 35037] gi|322374349|ref|ZP_08048863.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus sp. C300] gi|291316804|gb|EFE57240.1| Sua5/YciO/YrdC family protein [Streptococcus oralis ATCC 35037] gi|321279849|gb|EFX56888.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus sp. C300] Length = 200 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 64/189 (33%), Positives = 99/189 (52%), Gaps = 14/189 (7%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDISMVKKHAS 75 L+ G + +PTETVYGL + + A+ +Y++K+RP A+N + + DI K+ Sbjct: 9 LEKGGAVVLPTETVYGLFAKALDEKAVDHVYKLKRRPRDKALNLNVAFLEDILHFSKNQ- 67 Query: 76 VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133 P L L + F PGPLT++L+ + + + L T FR+P T LI G Sbjct: 68 --PTYLQKLVEAFLPGPLTIILE--ANDRVPYWVNSGLATVGFRMPSHPITLDLIRETG- 122 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 PL PSAN SGQ S IL + + L D ++ G +STI+++ + KV+ILR Sbjct: 123 PLIGPSANISGQASGVTFAQILEDFDQEVLGLEDDAFLT--GQDSTILDLSGD-KVKILR 179 Query: 194 PGGLEIETL 202 G ++ E + Sbjct: 180 QGAIKREDI 188 >gi|73909159|gb|AAH67857.2| YRDC protein [Homo sapiens] Length = 278 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 73/235 (31%), Positives = 112/235 (47%), Gaps = 40/235 (17%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ALR A L AG +A+PT+T+YGLA + A+R +Y +K R PL + ++ Sbjct: 66 TEALRAAVAELRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVA 125 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVPC-GFTK 125 V ++ V + L K PGP+TLV++ D++P + R+P F + Sbjct: 126 DVYRYCRVR-VPEGLLKDLLPGPVTLVMERSEELNKDLNPFT----PLVGIRIPDHAFMQ 180 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--------LE 177 L + + PLA+ SAN S Q S NV+ + ++ L+IDGG +IG L Sbjct: 181 DLAQMFEGPLALTSANLSSQASSLNVEEF--QDLWPQLSLVIDGG--QIGDGQSPECRLG 236 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTP---QSPGMLKSH 229 ST+V++ K I+RPG C E++T Q G+L SH Sbjct: 237 STVVDLSVPGKFGIIRPG-----------------CALESTTAILQQKYGLLPSH 274 >gi|55586836|ref|XP_513328.1| PREDICTED: yrdC domain-containing protein, mitochondrial [Pan troglodytes] Length = 279 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 73/235 (31%), Positives = 112/235 (47%), Gaps = 40/235 (17%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ALR A L AG +A+PT+T+YGLA + A+R +Y +K R PL + ++ Sbjct: 67 TEALRAAVAELRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVA 126 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVPC-GFTK 125 V ++ V + L K PGP+TLV++ D++P + R+P F + Sbjct: 127 DVYRYCRVR-VPEGLLKDLLPGPVTLVMERSEELNKDLNPFT----PLVGIRIPDHAFMQ 181 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--------LE 177 L + + PLA+ SAN S Q S NV+ + ++ L+IDGG +IG L Sbjct: 182 DLAQMFEGPLALTSANLSSQASSLNVEEF--QDLWPQLSLVIDGG--QIGDGQSPECRLG 237 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTP---QSPGMLKSH 229 ST+V++ K I+RPG C E++T Q G+L SH Sbjct: 238 STVVDLSVPGKFGIIRPG-----------------CALESTTAILQQKYGLLPSH 275 >gi|218461290|ref|ZP_03501381.1| translation factor sua5 protein [Rhizobium etli Kim 5] Length = 91 Score = 78.6 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 48/76 (63%), Positives = 55/76 (72%) Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306 EALI FG + +A I L+LS G L EAA NLF+YMK AD SG SSIAFS IP+ G Sbjct: 2 EALIAFGGAAVAGARDARIVLDLSPRGDLAEAAANLFDYMKRADASGVSSIAFSPIPDDG 61 Query: 307 LGIAINNRLERAAAPR 322 LG AIN+RL+RAAAPR Sbjct: 62 LGEAINDRLQRAAAPR 77 >gi|332248384|ref|XP_003273344.1| PREDICTED: yrdC domain-containing protein, mitochondrial-like [Nomascus leucogenys] Length = 270 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 73/235 (31%), Positives = 112/235 (47%), Gaps = 40/235 (17%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ALR A L AG +A+PT+T+YGLA + A+R +Y +K R PL + ++ Sbjct: 58 TEALRAAVAELRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVA 117 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVPC-GFTK 125 V ++ V + L K PGP+TLV++ D++P + R+P F + Sbjct: 118 DVYRYCRVR-VPEGLLKDLLPGPVTLVMERSEELNKDLNPFT----PLVGIRIPDHAFMQ 172 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--------LE 177 L + + PLA+ SAN S Q S NV+ + ++ L+IDGG +IG L Sbjct: 173 DLAQMFEGPLALTSANLSSQASSLNVEEF--QDLWPQLSLVIDGG--QIGDGQSPECRLG 228 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTP---QSPGMLKSH 229 ST+V++ K I+RPG C E++T Q G+L SH Sbjct: 229 STVVDLSVPGKFGIIRPG-----------------CALESTTAILQQKYGLLPSH 266 >gi|58761510|ref|NP_078916.3| yrdC domain-containing protein, mitochondrial precursor [Homo sapiens] gi|74750410|sp|Q86U90|YRDC_HUMAN RecName: Full=YrdC domain-containing protein, mitochondrial; AltName: Full=Dopamine receptor-interacting protein 3; AltName: Full=Ischemia/reperfusion-inducible protein homolog; Short=hIRIP; Flags: Precursor gi|30691316|gb|AAO41711.1| YRDC protein [Homo sapiens] gi|55666462|emb|CAH70083.1| yrdC domain containing (E. coli) [Homo sapiens] gi|66840171|gb|AAH80186.2| YrdC domain containing (E. coli) [Homo sapiens] gi|119627722|gb|EAX07317.1| yrdC domain containing (E. coli), isoform CRA_a [Homo sapiens] Length = 279 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 73/235 (31%), Positives = 112/235 (47%), Gaps = 40/235 (17%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ALR A L AG +A+PT+T+YGLA + A+R +Y +K R PL + ++ Sbjct: 67 TEALRAAVAELRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVA 126 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVPC-GFTK 125 V ++ V + L K PGP+TLV++ D++P + R+P F + Sbjct: 127 DVYRYCRVR-VPEGLLKDLLPGPVTLVMERSEELNKDLNPFT----PLVGIRIPDHAFMQ 181 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--------LE 177 L + + PLA+ SAN S Q S NV+ + ++ L+IDGG +IG L Sbjct: 182 DLAQMFEGPLALTSANLSSQASSLNVEEF--QDLWPQLSLVIDGG--QIGDGQSPECRLG 237 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTP---QSPGMLKSH 229 ST+V++ K I+RPG C E++T Q G+L SH Sbjct: 238 STVVDLSVPGKFGIIRPG-----------------CALESTTAILQQKYGLLPSH 275 >gi|114325403|gb|AAH08984.3| YRDC protein [Homo sapiens] Length = 292 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 65/198 (32%), Positives = 101/198 (51%), Gaps = 20/198 (10%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ALR A L AG +A+PT+T+YGLA + A+R +Y +K R PL + ++ Sbjct: 80 TEALRAAVAELRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVA 139 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVPC-GFTK 125 V ++ V + L K PGP+TLV++ D++P + R+P F + Sbjct: 140 DVYRYCRVR-VPEGLLKDLLPGPVTLVMERSEELNKDLNPFT----PLVGIRIPDHAFMQ 194 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--------LE 177 L + + PLA+ SAN S Q S NV+ + ++ L+IDGG +IG L Sbjct: 195 DLAQMFEGPLALTSANLSSQASSLNVEEF--QDLWPQLSLVIDGG--QIGDGQSPECRLG 250 Query: 178 STIVNVQCEKKVRILRPG 195 ST+V++ K I+RPG Sbjct: 251 STVVDLSVPGKFGIIRPG 268 >gi|307709437|ref|ZP_07645894.1| yrdC domain protein [Streptococcus mitis SK564] gi|307619751|gb|EFN98870.1| yrdC domain protein [Streptococcus mitis SK564] Length = 199 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/186 (32%), Positives = 96/186 (51%), Gaps = 8/186 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L+ G + +PTETVYGL + + A+ +Y++K+RP L ++ + + + P Sbjct: 8 LENGGAVVLPTETVYGLFAKALDEKAVDHVYQLKRRPRDKALNLNIDSLEDILHFSKNQP 67 Query: 79 LSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136 L L + F PGPLT++L+ + + + L T FR+P T LI G PL Sbjct: 68 TYLQKLVETFLPGPLTIILE--ANDRVPYWVNSGLATVGFRMPSHPITLDLIRVTG-PLI 124 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SGQ S + IL + L D ++ G +STI+++ + KV+ILR G Sbjct: 125 GPSANISGQSSGVTFEQILKDFDQDVLGLEDDAFLT--GQDSTILDLSGD-KVKILRQGA 181 Query: 197 LEIETL 202 ++ E + Sbjct: 182 IKREDI 187 >gi|125623427|ref|YP_001031910.1| putative translation factor [Lactococcus lactis subsp. cremoris MG1363] gi|124492235|emb|CAL97164.1| putative translation factor [Lactococcus lactis subsp. cremoris MG1363] gi|300070174|gb|ADJ59574.1| putative translation factor [Lactococcus lactis subsp. cremoris NZ9000] Length = 306 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 63/194 (32%), Positives = 104/194 (53%), Gaps = 9/194 (4%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 +A + L G + +PTETVYGL D+ N A+++LY +K RP L +VS + K+ Sbjct: 111 RAVKALKNGQLVVLPTETVYGLFADAMNEQAVQKLYSVKGRPTEKALNMNVSSFEDILKY 170 Query: 74 ASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETY 131 + P L + F PGPLT++L+ +++++ T FR+P T+K+I+ Sbjct: 171 SINTPDYLRKIVDAFLPGPLTIILE--ASSEVPEWIHIGKSTVGFRMPNIAVTQKVIKEV 228 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 G L PSAN +G S + LS I + + + S GL++TI+++ EK ++ Sbjct: 229 G-VLVGPSANLTGSKSPSFFAD-LSPEILENAAVAVQDD-SIYGLDTTIIDLTQEKP-KL 284 Query: 192 LRPGGL-EIETLKR 204 LR G + + E LK+ Sbjct: 285 LRQGAVTKAELLKK 298 >gi|183603392|ref|ZP_02711993.2| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae CDC1087-00] gi|183569699|gb|EDT90227.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae CDC1087-00] Length = 200 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 65/189 (34%), Positives = 99/189 (52%), Gaps = 14/189 (7%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDISMVKKHAS 75 L+ G + +PTETVYGL + + A+ +Y++K+RP A+N I DI K+ Sbjct: 9 LENGGAVVLPTETVYGLFAKALDEKAVDHVYQLKRRPRDKALNLNIASFEDILHFSKNQ- 67 Query: 76 VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133 P L L + F PG LT++L+ + + ++L T FR+P T LI G Sbjct: 68 --PTYLQKLVETFLPGSLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIRETG- 122 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 PL PSAN SGQ S + IL + + L D ++ G +STIV++ + KV+ILR Sbjct: 123 PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGD-KVKILR 179 Query: 194 PGGLEIETL 202 G ++ E + Sbjct: 180 QGAIKREDI 188 >gi|124027648|ref|YP_001012968.1| hypothetical protein Hbut_0770 [Hyperthermus butylicus DSM 5456] gi|123978342|gb|ABM80623.1| universally conserved protein [Hyperthermus butylicus DSM 5456] Length = 214 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 59/201 (29%), Positives = 100/201 (49%), Gaps = 5/201 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +R A + G + PT+TVYGL + + A+ R++ K+RP+ P+ VS + + Sbjct: 17 IRVAARIVALGGLVVYPTDTVYGLGANPFSSYAVWRVFRAKERPSNRPIPVLVSSLRAAE 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIET 130 K A +D + LA+ FWPGPLT+V+ + + L A RVP K IE Sbjct: 77 KIAELDDRARRLAERFWPGPLTIVVP--AKPGLPSLLHAGTGRIGVRVPNHPIALKFIEA 134 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G + SAN + S V+ + C+ + + +DGG + G ST+V++ K R Sbjct: 135 VGGAITGTSANLHRKPSPCTVQEAMKQLGCR-VDIYLDGGPTPGGTPSTVVDLTTPKP-R 192 Query: 191 ILRPGGLEIETLKRAISVELE 211 ++R G + E ++ ++ +E Sbjct: 193 LVRRGPIPPEEIEAVLATPIE 213 >gi|33339163|gb|AAQ14263.1|AF250397_1 dopamine receptor interacting protein 3 [Homo sapiens] Length = 223 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 65/198 (32%), Positives = 101/198 (51%), Gaps = 20/198 (10%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ALR A L AG +A+PT+T+YGLA + A+R +Y +K R PL + ++ Sbjct: 11 TEALRAAVAELRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVA 70 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVPC-GFTK 125 V ++ V + L K PGP+TLV++ D++P + R+P F + Sbjct: 71 DVYRYCRVR-VPEGLLKDLLPGPVTLVMERSEELNKDLNPFT----PLVGIRIPDHAFMQ 125 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--------LE 177 L + + PLA+ SAN S Q S NV+ + ++ L+IDGG +IG L Sbjct: 126 DLAQMFEGPLALTSANLSSQASSLNVEEF--QDLWPQLSLVIDGG--QIGDGQSPECRLG 181 Query: 178 STIVNVQCEKKVRILRPG 195 ST+V++ K I+RPG Sbjct: 182 STVVDLSVPGKFGIIRPG 199 >gi|306831309|ref|ZP_07464469.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304426545|gb|EFM29657.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 199 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 62/188 (32%), Positives = 91/188 (48%), Gaps = 22/188 (11%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L G + +PTETVYGL + N A+ +Y++K+RP + +V+D + + P Sbjct: 8 LQNGGAVILPTETVYGLFAQAMNENAVEHVYQLKRRPKDKAMNLNVADFETILAFSKQQP 67 Query: 79 LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLA 136 L L F PGPLT++L + + + L T FR+P T KLI+ G PL Sbjct: 68 SYLKKLYDAFLPGPLTIILQ--ANDRVPAWINSGLSTIGFRIPNHSQTLKLIKKAG-PLI 124 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI-------GLESTIVNVQCEKKV 189 PSAN SGQ S + KEI G ++ G++STI+++ K Sbjct: 125 GPSANISGQ---------ESGKVFKEIQKQFGGTVTGFADDAALTGVDSTILDL-SGKTA 174 Query: 190 RILRPGGL 197 RILR G + Sbjct: 175 RILRQGAI 182 >gi|297570958|ref|YP_003696732.1| Sua5/YciO/YrdC/YwlC family protein [Arcanobacterium haemolyticum DSM 20595] gi|296931305|gb|ADH92113.1| Sua5/YciO/YrdC/YwlC family protein [Arcanobacterium haemolyticum DSM 20595] Length = 215 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 61/211 (28%), Positives = 96/211 (45%), Gaps = 5/211 (2%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M ++S TD+ A + + AG + +PT+TVYG+ D + A+ L K R P Sbjct: 1 MVVVSSTDTQARTAVQKAVRAGKVVCLPTDTVYGVGADPFSYDAVTALLAAKSRTRAMPP 60 Query: 61 ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 V+ I + A P S L + FWPG LT++L T T T R+ Sbjct: 61 PVLVASIEQAESLAETVPASARALMEEFWPGALTIILPARETLGWDLGET--FGTVALRM 118 Query: 120 PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 P + + PLA+ SAN++GQ T + + + + + + +DGG S G+ S+ Sbjct: 119 PDDSATRDFLAHIGPLAVTSANKTGQPPATTIADA-ETQLGESVAVYVDGGTSPGGVPSS 177 Query: 180 IVNVQ-CEKKVRILRPGGLEIETLKRAISVE 209 IV ++R G L I L R + +E Sbjct: 178 IVRWHPATDTYDVVRLGALSIADLSRIVRIE 208 >gi|325958344|ref|YP_004289810.1| Sua5/YciO/YrdC/YwlC family protein [Methanobacterium sp. AL-21] gi|325329776|gb|ADZ08838.1| Sua5/YciO/YrdC/YwlC family protein [Methanobacterium sp. AL-21] Length = 204 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/200 (27%), Positives = 102/200 (51%), Gaps = 11/200 (5%) Query: 1 MQIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56 M+I+ I + N + +A E+L G + PT+TVYG+A ++ N +A+ ++++ KKR Sbjct: 1 MKILKINNKNPDPDTITQAKEYLKQGKIVVYPTDTVYGIAANAYNESAVSKVFDTKKRLK 60 Query: 57 MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 + +++I + A +D + L + +PGP T++ + I PL T Sbjct: 61 TKAVSLCLAEIEAINDVAFMDNKTEILVEQLFPGPFTVI--MRKKEQISPLLTGGTNKIG 118 Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R+P ++ L + P+ SAN SG +++ + + + L++D G+ K G Sbjct: 119 IRIPDNKLSRDLASEF--PITSTSANISG-LNVPETPKEVVEQLGDSVDLVLDAGVCKYG 175 Query: 176 LESTIVNVQCEKKVRILRPG 195 ST+V++ +K + ILR G Sbjct: 176 YHSTVVDMTGDKPI-ILRMG 194 >gi|19705289|ref|NP_602784.1| SUA5 protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19713254|gb|AAL94083.1| SUA5 protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 217 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 62/185 (33%), Positives = 94/185 (50%), Gaps = 9/185 (4%) Query: 16 CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75 E + G I PT+TVYGL N +I +Y K R +PLI +S + V++ A Sbjct: 22 SEEIKKGSLIIYPTDTVYGLGAIVTNEQSINNIYLAKSRSFSSPLIALLSSVDKVEEVAY 81 Query: 76 VD----PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130 V L L+K+FWPG LT++L S I + + T R+P K+I+ Sbjct: 82 VSDKNRELLKKLSKVFWPGALTVILK--SKEHIPSIMVSGGDTIGVRIPNLDLAIKIIDL 139 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G LA SAN SG+ + + LS +I ++ ++ID G K+G STI+++ + + Sbjct: 140 AGGILATTSANISGEATPKSYDE-LSEAIKSKVDILIDSGKCKLGEASTIIDLTSDVP-K 197 Query: 191 ILRPG 195 ILR G Sbjct: 198 ILRKG 202 >gi|307354113|ref|YP_003895164.1| Sua5/YciO/YrdC/YwlC family protein [Methanoplanus petrolearius DSM 11571] gi|307157346|gb|ADN36726.1| Sua5/YciO/YrdC/YwlC family protein [Methanoplanus petrolearius DSM 11571] Length = 192 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 64/184 (34%), Positives = 91/184 (49%), Gaps = 13/184 (7%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 I PTETVYGL D+ + A+ RLYE K RP P+ VSD+ M+ A +D Sbjct: 18 IVYPTETVYGLGCDALSDEAVSRLYEAKCRPLSKPVSIAVSDMEMLHAVAIIDEAEEKFI 77 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRS 143 K F PGP+T+++ + I P+ T R+P ++IE +G P+ SAN S Sbjct: 78 KRFLPGPVTVIVR--AKKCIPPVLTGGTGLIGIRMPDNDIAIEIIEKFGSPITSTSANLS 135 Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203 G IS V + + I IID G + G ST+V++ K VR G +IE + Sbjct: 136 GDISPVTVSQV--NVIYDH---IIDSG-TLPGNPSTVVDLVNRKIVR----AGAQIEEVA 185 Query: 204 RAIS 207 I+ Sbjct: 186 SFIA 189 >gi|187250922|ref|YP_001875404.1| putative translation factor [Elusimicrobium minutum Pei191] gi|186971082|gb|ACC98067.1| Putative translation factor [Elusimicrobium minutum Pei191] Length = 210 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 90/188 (47%), Gaps = 9/188 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A L G I PT+TVYG+ D+ NP A++R+ EIK++P+ PL SDI K Sbjct: 16 MLQAVNDLKNGAVIIAPTDTVYGIMADALNPQAVKRMCEIKQKPSDVPLQYLASDIKYAK 75 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 + A P + LA+ +WPGPLT+++ + T RVP F L+ Sbjct: 76 RIALFSPKATLLAEKYWPGPLTIIVPPSKEGKKY---LRGFDTLGIRVPKNDFIANLLNA 132 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 +G A SAN + + N + L ++ I GG + ES+ V + + Sbjct: 133 FGGVAAASSANLHSK-PVINSQEELIKEFNGKVDYIFTGG--QFSSESS--TVLSLEPFK 187 Query: 191 ILRPGGLE 198 I R GG++ Sbjct: 188 IFREGGIK 195 >gi|78222805|ref|YP_384552.1| translation factor SUA5 [Geobacter metallireducens GS-15] gi|78194060|gb|ABB31827.1| translation factor SUA5 [Geobacter metallireducens GS-15] Length = 203 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 51/162 (31%), Positives = 84/162 (51%), Gaps = 5/162 (3%) Query: 20 DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL 79 D G+ IA PT+T YG+ + I R+Y +K+R P SD+S V ++A V Sbjct: 24 DGGI-IAYPTDTTYGIGCSIFSKKGIERIYLLKQREKKKPFSFICSDLSEVARYAKVSNY 82 Query: 80 SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIP 138 + + K PGP T VLD +T+ + L KT R+P L++ GHP+ Sbjct: 83 AYKMLKRHLPGPYTFVLD--ATSIVPDLLVTKQKTVGIRIPDNRICLSLVKELGHPIITT 140 Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 SAN SG+ I + +++ ++ K++ +++DGGI + S + Sbjct: 141 SANLSGEEPIGD-PYLVDLNMGKQLDVVVDGGILSADVSSVV 181 >gi|225631196|ref|ZP_03787894.1| Sua5/YciO/YrdC/YwlC family protein [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225591104|gb|EEH12288.1| Sua5/YciO/YrdC/YwlC family protein [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 195 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 63/199 (31%), Positives = 95/199 (47%), Gaps = 29/199 (14%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81 L + PTETVY LA ++ + +I ++Y+IKKR PL VSDI + K A V + Sbjct: 12 NLLVCFPTETVYALACNALDNESIGKIYQIKKRSQNKPLSIFVSDIYNLTKIAKVKERYI 71 Query: 82 HLAKLFWPGPLTLVLDLLSTTDIHPLSTAN-LKTACFRVPCGFTKKLIETYGHPLAIP-- 138 L F PGP+ +L PL N L F+ G I HP+AI Sbjct: 72 DLINHFSPGPIAYIL---------PLKNNNILPNEFFKDSIG-----IRIPEHPIAISIL 117 Query: 139 ----------SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 S N SG+ S+ I SI + + ++I+ G+ESTI+++ E K Sbjct: 118 NKLKVPIVATSTNISGKESVCKANDI-PQSIKQHLSVVIEDDELVSGIESTIIDL-TEDK 175 Query: 189 VRILRPGGLEIETLKRAIS 207 +++LR G + ++T+ A S Sbjct: 176 IKVLREGAISLQTVNNAFS 194 >gi|56972134|gb|AAH88428.1| Yrdc protein [Rattus norvegicus] Length = 272 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 64/198 (32%), Positives = 97/198 (48%), Gaps = 20/198 (10%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ALR A L AG +A+PT+T+YGLA + A+ +Y +K R PL + ++ Sbjct: 60 TEALRAAVAELRAGAVVAVPTDTLYGLACSASCSAALSCVYRLKGRSEAKPLAVCLGRVA 119 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVPC-GFTK 125 V ++ V L LF PGP+TLV++ D++P + R+P F Sbjct: 120 DVYRYCQVRVPRELLEDLF-PGPVTLVMERSEELNKDLNPFT----PLVGIRIPDHAFML 174 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--------LE 177 L + +G PLA+ SAN S Q S +V+ + + L+IDGG IG L Sbjct: 175 DLAQMFGGPLALTSANLSSQASSLSVEEF--QDLWPHLSLVIDGG--PIGDSESPECRLG 230 Query: 178 STIVNVQCEKKVRILRPG 195 ST+V++ K I+R G Sbjct: 231 STVVDLSVPGKFGIIRSG 248 >gi|15675120|ref|NP_269294.1| hypothetical protein SPy_1143 [Streptococcus pyogenes M1 GAS] gi|19746090|ref|NP_607226.1| hypothetical protein spyM18_1103 [Streptococcus pyogenes MGAS8232] gi|71910678|ref|YP_282228.1| SUA5 protein [Streptococcus pyogenes MGAS5005] gi|306827353|ref|ZP_07460640.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pyogenes ATCC 10782] gi|13622279|gb|AAK34015.1| hypothetical protein SPy_1143 [Streptococcus pyogenes M1 GAS] gi|19748262|gb|AAL97725.1| hypothetical protein spyM18_1103 [Streptococcus pyogenes MGAS8232] gi|71853460|gb|AAZ51483.1| SUA5 protein [Streptococcus pyogenes MGAS5005] gi|304430500|gb|EFM33522.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pyogenes ATCC 10782] Length = 196 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 96/186 (51%), Gaps = 8/186 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 +++G + +PTETVYGL + + A+ +Y++K+RP + +V+D + + + P Sbjct: 8 IESGDALVLPTETVYGLFAKALDEKAVNAVYDLKQRPRDKAMNLNVADFNSILAFSKEQP 67 Query: 79 LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136 L L + F PGPLT++L + + + L T FR+P T LI+ G PL Sbjct: 68 RYLKKLYQAFLPGPLTIILK--ANDQVPYWINSGLSTVGFRLPSHPITAALIQKTG-PLI 124 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SG+ S HI+ + D ++ G +STI+++ E+ V ILR G Sbjct: 125 GPSANLSGKASGRVFDHIMQDFDFQVFGYADDPFLT--GKDSTILDLSGERAV-ILRQGA 181 Query: 197 LEIETL 202 + E L Sbjct: 182 ITKEEL 187 >gi|319936647|ref|ZP_08011060.1| hypothetical protein HMPREF9488_01893 [Coprobacillus sp. 29_1] gi|319808204|gb|EFW04769.1| hypothetical protein HMPREF9488_01893 [Coprobacillus sp. 29_1] Length = 200 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 56/198 (28%), Positives = 101/198 (51%), Gaps = 7/198 (3%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + + + C ++ +A PTETVYG+ V + A+ +L E K R + V+D Sbjct: 8 DEIEEVCNIIECNGVVAFPTETVYGVGVKFGSKIALDKLMEAKNRDYSKAITLMVADEKD 67 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 ++K+A V + + + F PG +TLV T D P+ T +T R+P + L+ Sbjct: 68 IEKYAFVSDDAKKIVQAFMPGMITLVFKKKDTVD--PIMTNGKETIGIRIPDDQYVLTLL 125 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 + G P+ + SAN S + T+ K +L + + I L++DG + + ST+V+V + Sbjct: 126 KKAG-PMLVTSANLSNHPNTTSTKEVL-NQLDGRIDLVVDGQTTD-NVASTVVDV-SRNE 181 Query: 189 VRILRPGGLEIETLKRAI 206 ++ILR G + E ++ + Sbjct: 182 MKILREGKITKEDIQEVL 199 >gi|225870519|ref|YP_002746466.1| hypothetical protein SEQ_1163 [Streptococcus equi subsp. equi 4047] gi|225699923|emb|CAW93855.1| conserved hypothetical protein [Streptococcus equi subsp. equi 4047] Length = 197 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 65/188 (34%), Positives = 94/188 (50%), Gaps = 8/188 (4%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 E + AG + +PTETVYGL + N A+ +Y +KKRP + +V+D + + Sbjct: 7 ETIKAGGALILPTETVYGLFAQALNEEAVNAVYRLKKRPRDKAMNLNVADFESILAFSKQ 66 Query: 77 DPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134 P L+ L + F PGPLT++L + T + LKT FR+P T K+I G P Sbjct: 67 QPAYLNKLYEAFLPGPLTIILKANAQTPYW--INSGLKTVGFRLPSHPLTAKIIRATG-P 123 Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194 L PSAN SG S I+ + K D ++ G +STI+++ KV ILR Sbjct: 124 LIGPSANLSGSKSGKCFNDIVKAFDGKVDGYADDAYLT--GKDSTILDLSSP-KVSILRQ 180 Query: 195 GGLEIETL 202 G + E L Sbjct: 181 GAITKEQL 188 >gi|139473766|ref|YP_001128482.1| hypothetical protein SpyM50925 [Streptococcus pyogenes str. Manfredo] gi|134272013|emb|CAM30252.1| conserved hypothetical protein [Streptococcus pyogenes str. Manfredo] Length = 196 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 96/186 (51%), Gaps = 8/186 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 +++G + +PTETVYGL + + A+ +Y++K+RP + +V+D + + + P Sbjct: 8 IESGDALVLPTETVYGLFAKALDEKAVNAVYDLKQRPRDKAMNLNVADFNSILAFSKEQP 67 Query: 79 LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136 L L + F PGPLT++L + + + L T FR+P T LI+ G PL Sbjct: 68 RYLKKLYQAFLPGPLTIILK--ANDQVPYWINSGLSTVGFRLPSHPITTALIQKTG-PLI 124 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SG+ S HI+ + D ++ G +STI+++ E+ V ILR G Sbjct: 125 GPSANLSGKASGRVFDHIMQDFDFQVFGYADDPFLT--GKDSTILDLSGERAV-ILRQGA 181 Query: 197 LEIETL 202 + E L Sbjct: 182 ITKEEL 187 >gi|52548507|gb|AAU82356.1| putative translation factor [uncultured archaeon GZfos17A3] Length = 241 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/178 (30%), Positives = 92/178 (51%), Gaps = 7/178 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +R A + G + PTETVYGL D+ + A+R +Y+IK+R A P+ VS Sbjct: 24 EDQIRTATAIIKHGGMVVYPTETVYGLGADAFSEAAVRNVYKIKRRAATQPISIAVSSFE 83 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCG-FTKK 126 M+ + A +D + + PGP+T+ L DI P + TA + R P + Sbjct: 84 MLHEVADIDSEYVEIIAELLPGPVTI---LFKKKDIVPAILTAASEVIGVRFPDNEIATR 140 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHI-LSSSICKEIPLIIDGGISKIGLESTIVNV 183 +I+ G P+ SAN SG+ T ++ + + + E+ +II+GG K + ST+V++ Sbjct: 141 IIKETG-PITATSANVSGRNPPTCIEEVEVELKLKVELGIIINGGKCKYSMPSTVVDM 197 >gi|269836450|ref|YP_003318678.1| Sua5/YciO/YrdC/YwlC family protein [Sphaerobacter thermophilus DSM 20745] gi|269785713|gb|ACZ37856.1| Sua5/YciO/YrdC/YwlC family protein [Sphaerobacter thermophilus DSM 20745] Length = 216 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 66/205 (32%), Positives = 95/205 (46%), Gaps = 28/205 (13%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK-H 73 A + L G I PT+TVYG+A +P A+ RLY +K RP P+ VSD+ V + Sbjct: 21 AADVLARGGLIVFPTDTVYGVAAAVDHPEAVARLYHVKGRPLDRPIPVLVSDLDQVPRLT 80 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGH 133 VDPL L L + FWPG LT+ + P + RV + H Sbjct: 81 GEVDPLVLDLLQRFWPGALTVAV------PAAPWLPREIVRDTGRV-------GLRMPDH 127 Query: 134 P------------LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 P LA SANRSG+ T +++ + LIIDGG + G+ ST++ Sbjct: 128 PLALAIIAAAGGALATTSANRSGEPE-TRTAAEADAALGDRVDLIIDGGPAPGGVPSTVL 186 Query: 182 NVQCEKKVRILRPGGLEIETLKRAI 206 V +++ + R G L+ E + RA Sbjct: 187 VVDG-RRLTVTRRGALDPEEIVRAF 210 >gi|257386952|ref|YP_003176725.1| Sua5/YciO/YrdC/YwlC family protein [Halomicrobium mukohataei DSM 12286] gi|257169259|gb|ACV47018.1| Sua5/YciO/YrdC/YwlC family protein [Halomicrobium mukohataei DSM 12286] Length = 193 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/180 (30%), Positives = 90/180 (50%), Gaps = 6/180 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +A + +D G + PTETVYGLA D+ +P A++R++++K R P+ V + Sbjct: 4 LDRAADAIDDGELVIYPTETVYGLAGDALDPDAVQRVFDVKGRDRSKPVSLAVPSVDAAT 63 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIET 130 + L + F PGP+T++ + + + TA RVP L+E Sbjct: 64 DYTEPSERELAFMRAFLPGPVTVLARRRPS--VPDVLTAGRDRVGIRVPDHELALALLER 121 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 P+ SAN SG+ S V I S+ + +++DGG + G EST+V+V ++ VR Sbjct: 122 VA-PITSTSANVSGEQSARTVDEI-GESVREGTAVVLDGGRTP-GTESTVVDVAADEIVR 178 >gi|58617022|ref|YP_196221.1| hypothetical protein ERGA_CDS_02950 [Ehrlichia ruminantium str. Gardel] gi|58416634|emb|CAI27747.1| Conserved hypothetical protein (putative translation factor SUA5 family) [Ehrlichia ruminantium str. Gardel] Length = 199 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 60/203 (29%), Positives = 102/203 (50%), Gaps = 10/203 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + KA E L I PTETVY LA D+ + I+++Y+IK RP P+ +S+I +K Sbjct: 2 ISKAVEALKNKQLICFPTETVYALAGDAYSIEVIQKIYKIKNRPYNKPVSLLLSNIDQIK 61 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 + +++ + ++ + PGP+T +L + + + N R+P ++ Sbjct: 62 QFSNLTEHTAYIIQELSPGPITFILPIHNYGKLPKQFFYN--KIGIRIPNHPIALAILNN 119 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 + HP+ S N SGQ T+V I S +I K I IID G ST++++ K Sbjct: 120 FDHPITATSVNISGQQDATSVDQI-SDNIKKNISFIIDNNRLVHGTASTVIDLTSYK--- 175 Query: 191 ILRPGGL---EIETLKRAISVEL 210 ILR G + +I+ + + I++ L Sbjct: 176 ILRKGAVTKQKIQEILKKINIIL 198 >gi|56808654|ref|ZP_00366379.1| COG0009: Putative translation factor (SUA5) [Streptococcus pyogenes M49 591] gi|209559425|ref|YP_002285897.1| Sua5/YciO/YrdC family protein [Streptococcus pyogenes NZ131] gi|209540626|gb|ACI61202.1| Sua5/YciO/YrdC family protein [Streptococcus pyogenes NZ131] Length = 196 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 96/186 (51%), Gaps = 8/186 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 +++G + +PTETVYGL + + A+ +Y++K+RP + +V+D + + + P Sbjct: 8 IESGDALVLPTETVYGLFAKALDEKAVNAVYDLKQRPRDKAMNLNVADFNSILAFSKEQP 67 Query: 79 LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136 L L + F PGPLT++L + + + L T FR+P T LI+ G PL Sbjct: 68 RYLKKLYQAFLPGPLTIILK--ANDQVPYWINSGLSTVGFRLPSHPITAALIQKTG-PLI 124 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SG+ S HI+ + D ++ G +STI+++ E+ V ILR G Sbjct: 125 GPSANLSGKASGRVFDHIMQDFDFQVFGYADDPFLT--GKDSTILDLSGERAV-ILRQGA 181 Query: 197 LEIETL 202 + E L Sbjct: 182 ITKEEL 187 >gi|294784249|ref|ZP_06749544.1| Sua5/YciO/YrdC/YwlC family protein [Fusobacterium sp. 3_1_27] gi|294488115|gb|EFG35466.1| Sua5/YciO/YrdC/YwlC family protein [Fusobacterium sp. 3_1_27] Length = 217 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 62/179 (34%), Positives = 90/179 (50%), Gaps = 9/179 (5%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP--- 78 G I PT+TVYGL N +I +Y K R +PLI +S + V++ A V Sbjct: 28 GSLIIYPTDTVYGLGAIVTNEQSINNIYLAKSRSFTSPLIALLSSVDKVEEVAYVSDKNK 87 Query: 79 -LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLA 136 L LAK FWPG LT++L I + + T R+P K+IE G LA Sbjct: 88 NLLEKLAKAFWPGALTVILK--RKEHIPSIMVSGGDTIGVRIPNLDLAIKIIELAGGILA 145 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 SAN SG+ + + LS +I ++ ++ID G K+G STI+++ + +ILR G Sbjct: 146 TTSANISGEATPKSYDE-LSEAIKSKVDILIDSGECKLGEASTIIDLTSDVP-KILRKG 202 >gi|254709555|ref|ZP_05171366.1| Sua5/YciO/YrdC/YwlC family protein [Brucella pinnipedialis B2/94] gi|261317083|ref|ZP_05956280.1| Sua5/YciO/YrdC/YwlC family protein [Brucella pinnipedialis B2/94] gi|261296306|gb|EEX99802.1| Sua5/YciO/YrdC/YwlC family protein [Brucella pinnipedialis B2/94] Length = 80 Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 42/80 (52%), Positives = 54/80 (67%) Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302 + P EAL+ FG + A LNLS TG L+EAA NLF++M+ D +GA++IA I Sbjct: 1 MKPGEALLAFGPHRVAESNRAAAVLNLSATGDLREAAANLFDFMRRLDATGAATIAVEPI 60 Query: 303 PNHGLGIAINNRLERAAAPR 322 P GLG AIN+RL+RAAAPR Sbjct: 61 PLDGLGEAINDRLKRAAAPR 80 >gi|306833421|ref|ZP_07466548.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus bovis ATCC 700338] gi|304424191|gb|EFM27330.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus bovis ATCC 700338] Length = 199 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 62/188 (32%), Positives = 91/188 (48%), Gaps = 22/188 (11%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L G + +PTETVYGL + N A+ +Y++K+RP + +V+D + + P Sbjct: 8 LQNGGAVILPTETVYGLFAQAMNENAVEHVYQLKRRPKDKAMNLNVADFETILAFSKQQP 67 Query: 79 LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136 L L F PGPLT++L + + + L T FR+P T KLI+ G PL Sbjct: 68 SYLKKLYDAFLPGPLTIILQ--ANDRVPAWINSGLSTIGFRIPNHPQTLKLIKKAG-PLI 124 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI-------GLESTIVNVQCEKKV 189 PSAN SGQ S + KEI G ++ G++STI+++ K Sbjct: 125 GPSANISGQ---------ESGKVFKEIQKQFGGTVTGFADDAALTGVDSTILDL-SGKTA 174 Query: 190 RILRPGGL 197 RILR G + Sbjct: 175 RILRQGAI 182 >gi|229818488|ref|ZP_04448769.1| hypothetical protein BIFANG_03796 [Bifidobacterium angulatum DSM 20098] gi|229784358|gb|EEP20472.1| hypothetical protein BIFANG_03796 [Bifidobacterium angulatum DSM 20098] Length = 225 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 65/202 (32%), Positives = 96/202 (47%), Gaps = 13/202 (6%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMN 58 ++ +ITD + L +A + G I IPT+TVYG+A D RN AI+R+Y+ K RP A+ Sbjct: 9 EVRAITDES-LAQAAAIVRGGGVIVIPTDTVYGIACDPRNAEAIQRIYQAKHRPQFKALQ 67 Query: 59 PLICHVSDISMVKKHASVDPLSLHLAKLFWPG---PLTLVLDLLSTTDIHPLSTANLKTA 115 L+ + DI + PL+ LA F PG P+ L + + T + T Sbjct: 68 VLLASIDDIDSLGLDLPA-PLN-RLAAAFMPGAFSPIALARPDCTLATVRKTPTGTM-TQ 124 Query: 116 CFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R+P I PLA SANRSG S V+ + ++ + L +DGG + Sbjct: 125 GVRIPNSTASLRILRATGPLAASSANRSGGESAQTVQEAV-QALGDSVDLYLDGGATPGH 183 Query: 176 LESTIVNV--QCEKKVRILRPG 195 + ST+V + ILR G Sbjct: 184 VSSTVVEADPHSRDGIAILREG 205 >gi|50914207|ref|YP_060179.1| hypothetical protein M6_Spy0861 [Streptococcus pyogenes MGAS10394] gi|50903281|gb|AAT86996.1| Sua5 [Streptococcus pyogenes MGAS10394] Length = 206 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 96/186 (51%), Gaps = 8/186 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 +++G + +PTETVYGL + + A+ +Y++K+RP + +V+D + + + P Sbjct: 18 IESGDALVLPTETVYGLFAKALDEKAVNAVYDLKQRPRDKAMNLNVADFNSILAFSKEQP 77 Query: 79 LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136 L L + F PGPLT++L + + + L T FR+P T LI+ G PL Sbjct: 78 RYLKKLYQAFLPGPLTIILK--ANDQVPYWINSGLSTVGFRLPSHPITAALIQKTG-PLI 134 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SG+ S HI+ + D ++ G +STI+++ E+ V ILR G Sbjct: 135 GPSANLSGKASGRVFDHIMQDFDFQVFGYADDPFLT--GKDSTILDLSGERAV-ILRQGA 191 Query: 197 LEIETL 202 + E L Sbjct: 192 ITKEEL 197 >gi|149023911|gb|EDL80408.1| ischemia/reperfusion inducible protein [Rattus norvegicus] Length = 263 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 64/198 (32%), Positives = 97/198 (48%), Gaps = 20/198 (10%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ALR A L AG +A+PT+T+YGLA + A+ +Y +K R PL + ++ Sbjct: 51 TEALRAAVAELRAGAVVAVPTDTLYGLACSASCSAALSCVYRLKGRSEAKPLAVCLGRVA 110 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVPC-GFTK 125 V ++ V L LF PGP+TLV++ D++P + R+P F Sbjct: 111 DVYRYCQVRVPRELLEDLF-PGPVTLVMERSEELNKDLNPFT----PLVGIRIPDHAFML 165 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--------LE 177 L + +G PLA+ SAN S Q S +V+ + + L+IDGG IG L Sbjct: 166 DLAQMFGGPLALTSANLSSQASSLSVEEF--QDLWPHLSLVIDGG--PIGDSESPECRLG 221 Query: 178 STIVNVQCEKKVRILRPG 195 ST+V++ K I+R G Sbjct: 222 STVVDLSVPGKFGIIRSG 239 >gi|325978214|ref|YP_004287930.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325178142|emb|CBZ48186.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 199 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 62/188 (32%), Positives = 91/188 (48%), Gaps = 22/188 (11%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L G + +PTETVYGL + N A+ +Y++K+RP + +V+D + + P Sbjct: 8 LQNGGAVILPTETVYGLFAQAMNEKAVEHVYQLKRRPKDKAMNLNVADFETILAFSKQQP 67 Query: 79 LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136 L L F PGPLT++L + + + L T FR+P T KLI+ G PL Sbjct: 68 SYLKKLYDAFLPGPLTIILQ--ANDRVPAWINSGLSTIGFRIPNHPQTLKLIKKAG-PLI 124 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI-------GLESTIVNVQCEKKV 189 PSAN SGQ S + KEI G ++ G++STI+++ K Sbjct: 125 GPSANISGQ---------ESGKVFKEIQKQFGGTVTGFADDAALTGVDSTILDL-SGKTA 174 Query: 190 RILRPGGL 197 RILR G + Sbjct: 175 RILRQGAI 182 >gi|296328533|ref|ZP_06871052.1| Sua5/YciO/YrdC/YwlC family protein [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154342|gb|EFG95141.1| Sua5/YciO/YrdC/YwlC family protein [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 217 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 62/185 (33%), Positives = 93/185 (50%), Gaps = 9/185 (4%) Query: 16 CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75 E + G I PT+TVYGL N +I +Y K R +PLI +S + V++ A Sbjct: 22 SEEIKKGSLIIYPTDTVYGLGAIVTNEQSINNIYLAKSRSFSSPLIALLSSVDKVEEVAY 81 Query: 76 VD----PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130 V L L+K FWPG LT++L S I + + T R+P K+I+ Sbjct: 82 VSDKNRELLKKLSKAFWPGALTVILK--SKEHIPSIMVSGGDTIGVRIPNLDLAIKIIDL 139 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G LA SAN SG+ + + LS +I ++ ++ID G K+G STI+++ + + Sbjct: 140 AGGILATTSANISGEATPKSYDE-LSEAIKSKVDILIDSGKCKLGEASTIIDLTSDVP-K 197 Query: 191 ILRPG 195 ILR G Sbjct: 198 ILRKG 202 >gi|71903504|ref|YP_280307.1| SUA5 protein [Streptococcus pyogenes MGAS6180] gi|71802599|gb|AAX71952.1| SUA5 protein [Streptococcus pyogenes MGAS6180] Length = 206 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 96/186 (51%), Gaps = 8/186 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 +++G + +PTETVYGL + + A+ +Y++K+RP + +V+D + + + P Sbjct: 18 IESGDALVLPTETVYGLFAKALDEKAVNAVYDLKQRPRDKAMNLNVADFNSILAFSKEQP 77 Query: 79 LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136 L L + F PGPLT++L + + + L T FR+P T LI+ G PL Sbjct: 78 RYLKKLYQAFLPGPLTIILK--ANDQVPYWINSGLSTVGFRLPSHPITTALIQKTG-PLI 134 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SG+ S HI+ + D ++ G +STI+++ E+ V ILR G Sbjct: 135 GPSANLSGKASGRVFDHIMQDFDFQVFGYADDPFLT--GKDSTILDLSGERAV-ILRQGA 191 Query: 197 LEIETL 202 + E L Sbjct: 192 ITKEEL 197 >gi|76781474|ref|NP_783194.2| yrdC domain-containing protein, mitochondrial precursor [Rattus norvegicus] gi|123781639|sp|Q499R4|YRDC_RAT RecName: Full=YrdC domain-containing protein, mitochondrial; AltName: Full=Ischemia/reperfusion-inducible protein homolog; Flags: Precursor gi|71681008|gb|AAH99797.1| YrdC domain containing (E.coli) [Rattus norvegicus] Length = 280 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 64/198 (32%), Positives = 97/198 (48%), Gaps = 20/198 (10%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ALR A L AG +A+PT+T+YGLA + A+ +Y +K R PL + ++ Sbjct: 68 TEALRAAVAELRAGAVVAVPTDTLYGLACSASCSAALSCVYRLKGRSEAKPLAVCLGRVA 127 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVPC-GFTK 125 V ++ V L LF PGP+TLV++ D++P + R+P F Sbjct: 128 DVYRYCQVRVPRELLEDLF-PGPVTLVMERSEELNKDLNPFT----PLVGIRIPDHAFML 182 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--------LE 177 L + +G PLA+ SAN S Q S +V+ + + L+IDGG IG L Sbjct: 183 DLAQMFGGPLALTSANLSSQASSLSVEEF--QDLWPHLSLVIDGG--PIGDSESPECRLG 238 Query: 178 STIVNVQCEKKVRILRPG 195 ST+V++ K I+R G Sbjct: 239 STVVDLSVPGKFGIIRSG 256 >gi|94990488|ref|YP_598588.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pyogenes MGAS10270] gi|94543996|gb|ABF34044.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pyogenes MGAS10270] Length = 206 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 96/186 (51%), Gaps = 8/186 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 +++G + +PTETVYGL + + A+ +Y++K+RP + +V+D + + + P Sbjct: 18 IESGDALVLPTETVYGLFAKALDEKAVNTVYDLKQRPRDKAMNLNVADFNSILAFSKEQP 77 Query: 79 LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136 L L + F PGPLT++L + + + L T FR+P T LI+ G PL Sbjct: 78 RYLKKLYQAFLPGPLTIILK--ANDQVPYWINSGLSTVGFRLPSHPITTALIQKTG-PLI 134 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SG+ S HI+ + D ++ G +STI+++ E+ V ILR G Sbjct: 135 GPSANLSGKASGRVFDHIMQDFDFQVFGYADDPFLT--GKDSTILDLSGERAV-ILRQGA 191 Query: 197 LEIETL 202 + E L Sbjct: 192 ITKEEL 197 >gi|311743974|ref|ZP_07717780.1| Sua5/YciO/YrdC/YwlC family protein [Aeromicrobium marinum DSM 15272] gi|311313104|gb|EFQ83015.1| Sua5/YciO/YrdC/YwlC family protein [Aeromicrobium marinum DSM 15272] Length = 216 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 90/187 (48%), Gaps = 21/187 (11%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL-HL 83 + +PT+TVYG+A +S +P+A+ RL K R P V + ++ A+ P L HL Sbjct: 29 VVVPTDTVYGIAANSFSPSAVARLLAAKGRGRDMPPPVLVGAPTTIEALATDIPSWLRHL 88 Query: 84 AKLFWPGPLTLV--------LDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPL 135 WPGPLT+V DL T D T R+P + PL Sbjct: 89 IGRHWPGPLTVVCRQQPSLTWDLGDTHD----------TVAVRMPDDPVALAVLRDSGPL 138 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 A+ SAN +G + T V+ + + + +DGG S+ G STI++V RILR G Sbjct: 139 AVSSANTTGAPAATTVEQA-EEMLGDSVAVYLDGGPSRGGTPSTILDVTAHTP-RILRAG 196 Query: 196 GLEIETL 202 +++ETL Sbjct: 197 AIDLETL 203 >gi|212703472|ref|ZP_03311600.1| hypothetical protein DESPIG_01516 [Desulfovibrio piger ATCC 29098] gi|212673086|gb|EEB33569.1| hypothetical protein DESPIG_01516 [Desulfovibrio piger ATCC 29098] Length = 222 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 61/207 (29%), Positives = 95/207 (45%), Gaps = 11/207 (5%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S A A D G+ +A PTET YGL + A+ R+Y+ K+RP PL + Sbjct: 10 STAEDAARRLRDGGV-LAFPTETFYGLGCCADQAVAVARVYQAKRRPVHMPLPLLAGSLE 68 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLD--LLSTTDIHPLSTANL----KTACFRVPCG 122 +++ + +++ L FWPGPLT+VL L PL+ + K A P Sbjct: 69 LLRPYVTLEQAPEALLTAFWPGPLTVVLTARLTPLEGRRPLAPQLVNPRGKAAVRLTPHP 128 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNV----KHILSSSICKEIPLIIDGGISKIGLES 178 +L G PL SAN SGQ + + +L++ + +++ G G+ S Sbjct: 129 LAARLSCLAGEPLTASSANISGQAAARVPDELDERLLAALTGPDDGVVVSGPAPAGGVPS 188 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRA 205 TIV +R+LR G + +E L+ A Sbjct: 189 TIVEPLAGTDLRVLRLGAVSLEALRAA 215 >gi|39996696|ref|NP_952647.1| Sua5/YciO/YrdC/YwlC family protein [Geobacter sulfurreducens PCA] gi|39983577|gb|AAR34970.1| Sua5/YciO/YrdC/YwlC family protein [Geobacter sulfurreducens PCA] gi|298505707|gb|ADI84430.1| tRNA (N6-threonylcarbamoyl-A37) modification ATPase [Geobacter sulfurreducens KN400] Length = 203 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 79/155 (50%), Gaps = 4/155 (2%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 E L G IA PT+T YG+ + I R+Y +K+R P S++S V ++A V Sbjct: 20 EVLGRGGVIAYPTDTTYGIGCSIFSKKGIERIYLLKQREKKKPFSFICSELSEVARYAKV 79 Query: 77 DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPL 135 + + K + PGP T V+D +T+ + L KT R+P L++ GHP+ Sbjct: 80 SNYAYKILKRYLPGPYTFVID--ATSVVPDLLVTKQKTVGIRIPDNRICIALVKELGHPI 137 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 SAN SG+ I + + ++ K++ L++DGG Sbjct: 138 VTTSANLSGEEPIGDPLEV-ERTLGKQLDLVVDGG 171 >gi|167718307|ref|ZP_02401543.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei DM98] Length = 141 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 40/89 (44%), Positives = 52/89 (58%), Gaps = 1/89 (1%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + A+ A LDAG +A PTETVYGL D++NP A+ R+Y K RPA +P+I H++ S Sbjct: 11 AEAIEDAAARLDAGELVAFPTETVYGLGADAQNPAAVARIYAAKGRPANHPVIVHLAPGS 70 Query: 69 MVKKHASVDPLSL-HLAKLFWPGPLTLVL 96 P L FWPGPLTL+L Sbjct: 71 DPGYWVEALPADAKKLIDAFWPGPLTLIL 99 >gi|21910337|ref|NP_664605.1| hypothetical protein SpyM3_0801 [Streptococcus pyogenes MGAS315] gi|28895912|ref|NP_802262.1| hypothetical protein SPs1000 [Streptococcus pyogenes SSI-1] gi|21904533|gb|AAM79408.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315] gi|28811162|dbj|BAC64095.1| hypothetical protein [Streptococcus pyogenes SSI-1] Length = 196 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 96/186 (51%), Gaps = 8/186 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 +++G + +PTETVYGL + + A+ +Y++K+RP + +V+D + + + P Sbjct: 8 IESGDALVLPTETVYGLFAKALDEKAVNAVYDLKQRPRDKAMNLNVADFNSILAFSKEQP 67 Query: 79 LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136 L L + F PGPLT++L + + + L T FR+P T LI+ G PL Sbjct: 68 RYLKKLYQAFLPGPLTIILK--ANDQVPYWINSGLSTVGFRLPNHPITAALIQKTG-PLI 124 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SG+ S HI+ + D ++ G +STI+++ E+ V ILR G Sbjct: 125 GPSANLSGKASGRVFDHIMQDFDFQVFGYADDPFLT--GKDSTILDLSGERAV-ILRQGA 181 Query: 197 LEIETL 202 + E L Sbjct: 182 ITKEEL 187 >gi|156548558|ref|XP_001605728.1| PREDICTED: similar to conserved hypothetical protein [Nasonia vitripennis] Length = 266 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 46/130 (35%), Positives = 72/130 (55%), Gaps = 3/130 (2%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A E L G +A+PT+T+YGLA ++N ++ RLYEIKKR PL + D+ ++ A Sbjct: 35 AAELLRNGKIVAMPTDTIYGLAGLAQNDASVARLYEIKKRDESKPLAICLWDVDDIENWA 94 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGH 133 V+ L L + PGP TLVL S+ ++P ++ R+P F + +++ Sbjct: 95 HVEDLPDGLLQALLPGPTTLVLKRKSS--LNPHLNPGVENVGIRIPKYDFIRSVVKMLNQ 152 Query: 134 PLAIPSANRS 143 P+A+ SAN S Sbjct: 153 PIALTSANES 162 >gi|308272719|emb|CBX29323.1| hypothetical protein N47_J03040 [uncultured Desulfobacterium sp.] Length = 253 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 103/216 (47%), Gaps = 26/216 (12%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI---------- 61 ++KA + +G + P +YGLA D+ N TA+++++EIK R PL+ Sbjct: 45 IKKAASVIRSGGVVVFPARCLYGLAADAFNETAVQKVFEIKGRTEKKPLLVLADSHLMIS 104 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 C V DI+ P++ + K FWPG +T++L+ + + L+ K + Sbjct: 105 CIVKDIT---------PMAQKIMKSFWPGLVTIILE-ANDSLCDNLTAGTGKIGVRKPGH 154 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 L++ G P+ SAN SG ++ I I +++ LI+D G K G ST+V Sbjct: 155 PVALALVKAVGGPVTGTSANPSGASGCYDITDI-DPEIAEKVDLILDAGTLKGGTGSTVV 213 Query: 182 NVQCEKKVRILRPG---GLEIETLKRAISV-ELEYC 213 +V E V I+R G G EI A +V E +C Sbjct: 214 DVTGEVPV-IIREGEVSGNEILAASGASAVYETSFC 248 >gi|108757718|ref|YP_632028.1| Sua5/YciO/YrdC/YwlC family protein [Myxococcus xanthus DK 1622] gi|108461598|gb|ABF86783.1| Sua5/YciO/YrdC/YwlC family protein [Myxococcus xanthus DK 1622] Length = 203 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 56/190 (29%), Positives = 94/190 (49%), Gaps = 6/190 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E L+ G +A PT+T +GL D + I RLY++K R PL D+S V Sbjct: 18 IQRAVEVLERGGLLAYPTDTYFGLGCDLSSKKGIERLYQLKGRDKKKPLSFLCPDLSDVA 77 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130 ++A V + K PG T +L+ +T + L + K RVP ++L Sbjct: 78 RYAHVSNFAYRTMKSLTPGAFTFILE--ATRLVPDLMMSKQKQVGIRVPDSALVRELTRA 135 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G PL SA + +T+ K I + + + LI+DGG++ + ST++++ + + Sbjct: 136 LGRPLVTTSATNTEGEPLTDAKDI-KADLGHGLDLILDGGVT-LNEPSTVISLIGD-SLE 192 Query: 191 ILRPGGLEIE 200 ILR G +E Sbjct: 193 ILRQGKGRLE 202 >gi|152965228|ref|YP_001361012.1| Sua5/YciO/YrdC/YwlC family protein [Kineococcus radiotolerans SRS30216] gi|151359745|gb|ABS02748.1| Sua5/YciO/YrdC/YwlC family protein [Kineococcus radiotolerans SRS30216] Length = 241 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 66/207 (31%), Positives = 101/207 (48%), Gaps = 18/207 (8%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL-HL 83 + +PT+TVYG+ D+ NP A++RL E K R P V + + AS P ++ L Sbjct: 30 VVLPTDTVYGIGADAFNPAAVKRLLEAKGRGRDMPPPVLVPETRTIDGLASSIPFAVREL 89 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANL----KTACFRVPC-GFTKKLIETYGHPLAIP 138 FWPG LT+V P T +L T R+P +L+ G P+A+ Sbjct: 90 IDAFWPGALTIV------CRAQPSLTWDLGETNGTVALRMPLHPVALELLRRTG-PMAVS 142 Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLE 198 SAN SG+ + T V + + + + + +DGG S G STIV+ + +R+LR G + Sbjct: 143 SANLSGRPAATVVGEAV-EQLGESVRVYLDGGPSTKGAPSTIVDAS-DGPLRVLRVGAIS 200 Query: 199 IETLKRAIS---VELEYCVDETSTPQS 222 L+ A+ VELE E T ++ Sbjct: 201 EAELRAAVPAGWVELEEPAVEEPTAEA 227 >gi|256846908|ref|ZP_05552362.1| SUA5 family protein [Fusobacterium sp. 3_1_36A2] gi|256717706|gb|EEU31265.1| SUA5 family protein [Fusobacterium sp. 3_1_36A2] Length = 217 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 62/179 (34%), Positives = 90/179 (50%), Gaps = 9/179 (5%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP--- 78 G I PT+TVYGL N +I +Y K R +PLI +S + V++ A V Sbjct: 28 GSLIIYPTDTVYGLGAIVTNEQSINNIYLAKSRSFTSPLIALLSSVDKVEEVAYVSDKNK 87 Query: 79 -LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLA 136 L LAK FWPG LT++L I + + T R+P K+IE G LA Sbjct: 88 NLLEKLAKAFWPGALTVILK--RKEHIPSIIVSGGDTIGVRIPNLDLAIKIIELAGGILA 145 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 SAN SG+ + + LS +I ++ ++ID G K+G STI+++ + +ILR G Sbjct: 146 TTSANISGEATPKSYDE-LSEAIKSKVDILIDSGECKLGEASTIIDLTSDVP-KILRKG 202 >gi|308480641|ref|XP_003102527.1| hypothetical protein CRE_04025 [Caenorhabditis remanei] gi|308261259|gb|EFP05212.1| hypothetical protein CRE_04025 [Caenorhabditis remanei] Length = 215 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 73/199 (36%), Positives = 105/199 (52%), Gaps = 18/199 (9%) Query: 18 FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL-ICHVSDISMVKKHASV 76 FL G+ +A+PT+T+YG++ + P + RLY +K+RP PL I S SM K S Sbjct: 25 FLRGGI-VALPTDTLYGIS--TLLPFS-DRLYALKQRPFEKPLGIFLPSPTSM--KLVSK 78 Query: 77 DPLSLHLAKLFWPGPLTLVLDLLST--TDIHPLSTANLKTACFRVP-CGFTKKLIETYGH 133 +S LA PGP+TL+ + L + +P + AC RVP C ++ G Sbjct: 79 QTISDELANCLLPGPVTLMFERLPNLPDEFNP---GVVNVAC-RVPDCAIVSRICRKLGQ 134 Query: 134 PLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGG-ISKIGLESTIVNVQCEKKVRI 191 PLA SAN SG ++ T++ H ++ I LI+D G I G STIV++ E RI Sbjct: 135 PLAQTSANVSGSPLNPTSIDHF--KNLHSNIDLILDNGQIVSSGEGSTIVDLTVESCFRI 192 Query: 192 LRPGGLEIETLKRAISVEL 210 +R G E ET+K+ S L Sbjct: 193 VRSGCAESETIKKLKSFGL 211 >gi|297822817|ref|XP_002879291.1| hypothetical protein ARALYDRAFT_482017 [Arabidopsis lyrata subsp. lyrata] gi|297325130|gb|EFH55550.1| hypothetical protein ARALYDRAFT_482017 [Arabidopsis lyrata subsp. lyrata] Length = 263 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 60/193 (31%), Positives = 101/193 (52%), Gaps = 10/193 (5%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 ++A E + + IA+PT+T+YG A D+ + A+ R+YEIK R +PL V D+ +K+ Sbjct: 77 QEAIEAIKSDKVIAVPTDTLYGFACDACSLEAVNRIYEIKGRKLTSPLAICVGDVFDIKR 136 Query: 73 HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETY 131 A+ + L L PGP+TLVL ++ + + T RVP C F ++++ Sbjct: 137 VATTNHLPHGLLDSLLPGPVTLVLHRGESSILEKSLNPGIGTIGIRVPDCEFIREVLRGS 196 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 G LA+ SAN SG S V + +++ L++D + ES + V +++ + Sbjct: 197 GSVLALTSANLSGDRSSVCVNDF--EKLWQDLQLLMD-----LKFES--LWVLSKQQWQS 247 Query: 192 LRPGGLEIETLKR 204 LR + +TLKR Sbjct: 248 LRSICWKKKTLKR 260 >gi|194246572|ref|YP_002004211.1| Translation factor [Candidatus Phytoplasma mali] gi|193806929|emb|CAP18361.1| Translation factor [Candidatus Phytoplasma mali] Length = 187 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 58/193 (30%), Positives = 93/193 (48%), Gaps = 14/193 (7%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 + G I PT+T+YG+ + I ++Y++KKR PL +D+S V+ ++ Sbjct: 1 MKKGSLIIFPTDTIYGIGAKINDNEGINKIYKLKKRDFSKPLSVLFADLSQVRHLVKINS 60 Query: 79 LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA--NLKTACFRVPCGFTKKLIETYGHPLA 136 S L FWPGPLTL+ L TT + NL + P KL++ +G PL Sbjct: 61 TSRKLINYFWPGPLTLI---LKTTSFYKKKNKENNLGIRQPKHPLAL--KLLKKHG-PLK 114 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLII---DGGISKIGLESTIVNVQCEKKVRILR 193 S N SG + N K ++ K++ I + +SK L ST++++Q +ILR Sbjct: 115 TTSVNISGFPPLNNYK-VIRQIYEKKVDYIFYSSNQNLSK--LSSTVLDLQLNNNFKILR 171 Query: 194 PGGLEIETLKRAI 206 G + E + + I Sbjct: 172 EGSITKEMIYKVI 184 >gi|328951772|ref|YP_004369106.1| Sua5/YciO/YrdC/YwlC family protein [Desulfobacca acetoxidans DSM 11109] gi|328452096|gb|AEB07925.1| Sua5/YciO/YrdC/YwlC family protein [Desulfobacca acetoxidans DSM 11109] Length = 202 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 80/161 (49%), Gaps = 4/161 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 LR+ + L AG IA PT+T YG+ D N AI ++Y+ KKRP P +D+ + Sbjct: 15 LRRVVQVLTAGGIIAYPTDTCYGIGCDLFNKKAIEKIYQFKKRPLTKPFSFICADLKHIS 74 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130 ++A V + + PGP T +L+ + + + KTA RVP L++ Sbjct: 75 EYAKVSNFAYKTMRRLLPGPYTFILE--GSRLVPKIMLTRRKTAGLRVPDNAICLGLVKL 132 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171 GHP+ SA+R S+ + + ++ + L+IDGG+ Sbjct: 133 LGHPIISTSASREDG-SVMSDPYDIAEYYKPPLDLVIDGGV 172 >gi|297626234|ref|YP_003687997.1| Sua5/YciO/YrdC/YwlC [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921999|emb|CBL56561.1| Sua5/YciO/YrdC/YwlC [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 292 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 61/193 (31%), Positives = 96/193 (49%), Gaps = 5/193 (2%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-L 83 I +PT+TVYG+ D+ + A++ L K R P +++ +M+ S PL + Sbjct: 60 IVLPTDTVYGIGADAFSADAVQGLLNAKHRGRDMPPPVLIAEPAMLPALVSSIPLGAERM 119 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRS 143 K WPG LTL+L+ + T +H T RVP + + + PLA+ SAN S Sbjct: 120 IKECWPGALTLILN--AATALHMDLGETAGTIAVRVPDNDDARALLLHTGPLAVSSANIS 177 Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203 GQ S T+V + + + + + +DGG + + STIV+ RILR G + + L+ Sbjct: 178 GQPSATDVGAAI-AMLGDSVAVYLDGGRTPGPVASTIVDFTVSPAGRILRQGVIGFDQLE 236 Query: 204 RAISVELEYCVDE 216 +S LE V E Sbjct: 237 -GLSPGLEDLVTE 248 >gi|257464356|ref|ZP_05628733.1| SUA5 protein [Fusobacterium sp. D12] gi|317061861|ref|ZP_07926346.1| SUA5 protein [Fusobacterium sp. D12] gi|313687537|gb|EFS24372.1| SUA5 protein [Fusobacterium sp. D12] Length = 202 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 60/199 (30%), Positives = 101/199 (50%), Gaps = 8/199 (4%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 ++ E + G I PT+TVYG+A ++ A+ LY+ K R +PLI V + + + Sbjct: 6 KEIGEQVKKGALIIYPTDTVYGIAASMQSEEALIHLYQAKSRNFSSPLIALVDSVERISE 65 Query: 73 HASVDPLSLH---LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLI 128 A +D L+K FWPG LT++L +S N T R+P ++I Sbjct: 66 IAYIDNKKEELETLSKAFWPGGLTVILPAKDCVPKIMISGGN--TVGVRIPNHKMALEII 123 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 G L SAN SG+ + ++ + LS +I ++ ++IDGG+ +G STI++ + Sbjct: 124 RAAGGILPTTSANISGEATPSSYQE-LSEAIKQKADIVIDGGVCPVGEASTILDF-TKDS 181 Query: 189 VRILRPGGLEIETLKRAIS 207 ++ILR G + E ++ I Sbjct: 182 LQILRLGAITKEEIEAVIG 200 >gi|218779903|ref|YP_002431221.1| Sua5/YciO/YrdC/YwlC family protein [Desulfatibacillum alkenivorans AK-01] gi|218761287|gb|ACL03753.1| Sua5/YciO/YrdC/YwlC family protein [Desulfatibacillum alkenivorans AK-01] Length = 214 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 62/201 (30%), Positives = 93/201 (46%), Gaps = 10/201 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 A+ +A L G + PT +YGLA + +P A+ ++ IK RP PL+ V I Sbjct: 15 EAINQAVRILKEGGVVVFPTTGLYGLAAKASDPQAVAEVFRIKGRPDDKPLLILVDSIDQ 74 Query: 70 VKKHASVDPLSLH-LAKLFWPGPLTLVL---DLLSTTDIHPLSTANLKTACFRVPCGFTK 125 VK P S L + WPG +TLV DLL + + ++ A V + Sbjct: 75 VKPLVREVPESGRLLMEKLWPGGITLVFCASDLLPPSLLGGKKKIGIRMAAHPV----AR 130 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 L++ G P+ SAN SG+ + + LS ++ + PL +D G G ST+V+V Sbjct: 131 ALVKGLGEPITGTSANLSGEPGAGDFRQ-LSLAVLERTPLALDAGKLAGGAGSTVVDV-T 188 Query: 186 EKKVRILRPGGLEIETLKRAI 206 E ILR G E + A+ Sbjct: 189 EDPPLILRQGAAPKEKIFNAL 209 >gi|312278144|gb|ADQ62801.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus thermophilus ND03] Length = 201 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 64/199 (32%), Positives = 99/199 (49%), Gaps = 14/199 (7%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDISM 69 ++ E L+ G + +PTETVYGL + + A+ +YE+K RP AMN + DI Sbjct: 6 KQLREILNNGEAVVLPTETVYGLFAKALDEKAVNYVYELKNRPRDKAMNLNVASYEDILF 65 Query: 70 VKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 K P L L F PGPLT++L + + + L T FR+P T++L Sbjct: 66 YSKEQ---PKYLKQLYDAFLPGPLTIILK--ANDQVPRWINSGLATVGFRLPNHPVTREL 120 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I+ G PL PSAN+SG+ S + I + + D + +G++STI+++ Sbjct: 121 IQAEG-PLIGPSANKSGKESGRHFDDIRAQFDFQVTGYQDDNAL--LGVDSTILDLSV-S 176 Query: 188 KVRILRPGGLEIETLKRAI 206 RILR G + + L A+ Sbjct: 177 PARILRQGKITKDDLLAAL 195 >gi|298530069|ref|ZP_07017471.1| SUA5/yciO/yrdC domain protein [Desulfonatronospira thiodismutans ASO3-1] gi|298509443|gb|EFI33347.1| SUA5/yciO/yrdC domain protein [Desulfonatronospira thiodismutans ASO3-1] Length = 212 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 99/205 (48%), Gaps = 11/205 (5%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 M S ++ +A + + + + PTET++G+ + ++++ E+KKRP P Sbjct: 1 MEFNMSGSIFQAVQIIKSEKILIYPTETLWGMGGTGTSKAVVQKIRELKKRPVHKPFPLI 60 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLV---LDLLSTTDIHPLSTANLKTACFRV- 119 + + ++DP SL LA FWPGP++++ LD+L+ P RV Sbjct: 61 AGTLEQARSFVAMDPESLELAGQFWPGPVSILCRALDMLA-----PGVRDEQGMVSIRVT 115 Query: 120 PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI-GLES 178 P +L G PL SAN SG+ S V L S + +++ ++ + G + GL S Sbjct: 116 PHQDAARLCLDAGTPLIATSANISGEKSCA-VFEELDSELLRKVDMVFEHGHAPAGGLPS 174 Query: 179 TIVNVQCEKKVRILRPGGLEIETLK 203 T+V V K+ ILR G + + L+ Sbjct: 175 TLVRVFGGGKIEILREGRISRQDLE 199 >gi|310287869|ref|YP_003939127.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium bifidum S17] gi|313141023|ref|ZP_07803216.1| conserved protein in the Sua5/YciO/YrdC family protein [Bifidobacterium bifidum NCIMB 41171] gi|309251805|gb|ADO53553.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium bifidum S17] gi|313133533|gb|EFR51150.1| conserved protein in the Sua5/YciO/YrdC family protein [Bifidobacterium bifidum NCIMB 41171] Length = 219 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 63/215 (29%), Positives = 105/215 (48%), Gaps = 14/215 (6%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M + + +L +A + G + IPT+TVYG+A D RN AI R+Y++K RP L Sbjct: 1 MSAVRKVNEESLAEAASVIAGGGLVVIPTDTVYGVACDPRNEAAIDRIYQVKSRPRFKAL 60 Query: 61 ICHVSDISMVKKHASVDPLSLH-LAKLFWPG---PLTLVLD--LLSTTDIHPLSTANLKT 114 ++ + + P L+ LA F PG P+ + + L+T P +T Sbjct: 61 QVLLASVDQLDGLGLDLPSPLNRLAAQFLPGAFSPIAVAREDCTLATVSATPQGR---RT 117 Query: 115 ACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173 RVP T +++ G PLA SANRSG S V+ + + ++ L +DGG ++ Sbjct: 118 QGIRVPNSALTLRILNELG-PLAASSANRSGDESAQTVEEAV-QAFGDDVQLYLDGGPTQ 175 Query: 174 IGLESTIVNVQCEKK--VRILRPGGLEIETLKRAI 206 + ST+V ++ + ILR G + +++A+ Sbjct: 176 GHVASTVVAADPHERDGIVILREGVIPQPVVRKAV 210 >gi|331266422|ref|YP_004326052.1| translation factor (SUA5), putative [Streptococcus oralis Uo5] gi|326683094|emb|CBZ00712.1| translation factor (SUA5), putative [Streptococcus oralis Uo5] Length = 199 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 60/186 (32%), Positives = 97/186 (52%), Gaps = 8/186 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L+ G + +PTETVYGL + + A+ +Y++K+RP L +V+ + + + P Sbjct: 8 LEKGGAVVLPTETVYGLFAKALDEKAVDHVYKLKRRPRDKALNLNVASLEDILHFSKNQP 67 Query: 79 LSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136 L L + F PGPLT++L+ + + + L T FR+P T LI G PL Sbjct: 68 TYLQKLVEAFLPGPLTIILE--ANDRVPYWVNSGLATVGFRMPSHPITLDLIRETG-PLI 124 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SG+ S IL + + L D ++ G +STI+++ + KV+ILR G Sbjct: 125 GPSANISGRASGVAFARILEDFDQEVLGLEDDAFLT--GQDSTILDLSGD-KVKILRQGA 181 Query: 197 LEIETL 202 ++ E + Sbjct: 182 IKREDI 187 >gi|94988612|ref|YP_596713.1| sua5/YciO/YrdC/YwlC family protein [Streptococcus pyogenes MGAS9429] gi|94992436|ref|YP_600535.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pyogenes MGAS2096] gi|94542120|gb|ABF32169.1| sua5/YciO/YrdC/YwlC family protein [Streptococcus pyogenes MGAS9429] gi|94545944|gb|ABF35991.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pyogenes MGAS2096] Length = 206 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 96/186 (51%), Gaps = 8/186 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 +++G + +PTETVYGL + + A+ +Y++K+RP + +V+D + + + P Sbjct: 18 IESGDALVLPTETVYGLFAKALDEKAVNAVYDLKQRPRDKAMNLNVADFNSILVFSKEQP 77 Query: 79 LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136 L L + F PGPLT++L + + + L T FR+P T LI+ G PL Sbjct: 78 RYLKKLYQAFLPGPLTIILK--ANDQVPYWINSGLSTVGFRLPSHPITTALIQKTG-PLI 134 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SG+ S HI+ + D ++ G +STI+++ E+ V ILR G Sbjct: 135 GPSANLSGKASGRVFDHIMQDFDFQVFGYADDPFLT--GKDSTILDLSGERAV-ILRQGA 191 Query: 197 LEIETL 202 + E L Sbjct: 192 ITKEEL 197 >gi|322373124|ref|ZP_08047660.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus sp. C150] gi|321278166|gb|EFX55235.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus sp. C150] Length = 201 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 64/189 (33%), Positives = 94/189 (49%), Gaps = 12/189 (6%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDISMVKKHASVDP 78 G + +PTETVYGL + + A+ +YE+K RP AMN + DI K D Sbjct: 15 GGAVVLPTETVYGLFARALDEKAVNHVYELKNRPRDKAMNLNVASYEDILTYSKEQP-DY 73 Query: 79 LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAI 137 L L F PGPLT++L + + + L T FR+P T++LI+ G PL Sbjct: 74 LK-KLYDAFLPGPLTIILK--ANGQVPKWINSGLATVGFRLPNHPVTRELIQAEG-PLIG 129 Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197 PSAN+SG S HI + + D + +GL+STI+++ + RILR G + Sbjct: 130 PSANKSGMASGRYFDHIRAQFDFQVTGYQDDDAL--LGLDSTILDL-SDTPARILRQGKI 186 Query: 198 EIETLKRAI 206 + L A+ Sbjct: 187 TKDDLLAAL 195 >gi|320546678|ref|ZP_08040990.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus equinus ATCC 9812] gi|320448733|gb|EFW89464.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus equinus ATCC 9812] Length = 198 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 61/191 (31%), Positives = 98/191 (51%), Gaps = 14/191 (7%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 E L +G + +PTETVYGL + N A+ +Y++K+RP + +V+D + + Sbjct: 6 EILQSGGAVILPTETVYGLFAQAMNEDAVEHVYQLKRRPKEKAMNLNVADYETILAFSKN 65 Query: 77 DPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134 P L + F PGPLT++L + + + L T FR+P T +LI+ G P Sbjct: 66 QPSYLKKIYDTFLPGPLTIILQ--ANDRVPAWINSGLSTIGFRIPKHPQTLELIKKTG-P 122 Query: 135 LAIPSANRSGQIS---ITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 L PSAN SG+ S ++K +++ L D ++ G++STI+++ E RI Sbjct: 123 LIGPSANISGKESGKIFADIKKQFGNNVTG---LSDDAALT--GVDSTILDLSGE-SARI 176 Query: 192 LRPGGLEIETL 202 LR G + E L Sbjct: 177 LRQGAITKEEL 187 >gi|297665439|ref|XP_002811084.1| PREDICTED: yrdC domain-containing protein, mitochondrial-like [Pongo abelii] Length = 350 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 65/198 (32%), Positives = 101/198 (51%), Gaps = 20/198 (10%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ALR A L AG +A+PT+T+YGLA + A+R +Y +K R PL + ++ Sbjct: 138 TEALRAAVAELRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVA 197 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVP-CGFTK 125 V ++ V + L K PGP+TLV++ D++P + R+P F + Sbjct: 198 DVYRYCRVR-VPEGLLKDLLPGPVTLVMERSEELNKDLNPFT----PLVGIRIPDHAFMQ 252 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--------LE 177 L + + PLA+ SAN S Q S NV+ + ++ L+IDGG +IG L Sbjct: 253 DLAQMFEGPLALTSANLSSQASSLNVEEF--QDLWPQLSLVIDGG--QIGDGQSPECRLG 308 Query: 178 STIVNVQCEKKVRILRPG 195 ST+V++ K I+RPG Sbjct: 309 STVVDLSVPGKFGIIRPG 326 >gi|197117703|ref|YP_002138130.1| tRNA (N6-threonylcarbamoyl-A37) modification ATPase [Geobacter bemidjiensis Bem] gi|197087063|gb|ACH38334.1| tRNA (N6-threonylcarbamoyl-A37) modification ATPase [Geobacter bemidjiensis Bem] Length = 202 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 49/158 (31%), Positives = 76/158 (48%), Gaps = 4/158 (2%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 K E L G +A PT+T YG+ + I R+Y++K+R P SDIS + ++ Sbjct: 17 KVVEILKNGGVVAYPTDTTYGIGCSIFSKKGIERIYQVKQRDRKKPFSFICSDISEISRY 76 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYG 132 A V + + PGP T VL+ S + L T +T R+P +++ G Sbjct: 77 ARVSNYAFKQLRRLLPGPYTFVLEANSV--VPDLVTTKQRTVGIRMPDNNICLAIVKELG 134 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 HP+ SAN SG+ I N + + K + L++DGG Sbjct: 135 HPIVTTSANLSGEDPIGNPWQV-EHELGKLLDLVVDGG 171 >gi|55820818|ref|YP_139260.1| Sua5/YciO/YrdC family protein [Streptococcus thermophilus LMG 18311] gi|55736803|gb|AAV60445.1| hypothetical protein, Sua5/YciO/YrdC family protein [Streptococcus thermophilus LMG 18311] Length = 201 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 64/199 (32%), Positives = 99/199 (49%), Gaps = 14/199 (7%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDISM 69 ++ E L+ G + +PTETVYGL + + A+ +YE+K RP AMN + DI Sbjct: 6 KQLREILNNGEAVVLPTETVYGLFAKALDEKAVDYVYELKNRPRDKAMNLNVASYEDILF 65 Query: 70 VKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 K P L L F PGPLT++L + + + L T FR+P T++L Sbjct: 66 YSKEQ---PKYLKQLYDAFLPGPLTIILK--ANDQVPRWINSGLATVGFRLPNHPVTREL 120 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I+ G PL PSAN+SG+ S + I + + D + +G++STI+++ Sbjct: 121 IQAEG-PLIGPSANKSGKESGRHFDDIRAQFDFQVTGYQDDNAL--LGVDSTILDLSV-S 176 Query: 188 KVRILRPGGLEIETLKRAI 206 RILR G + + L A+ Sbjct: 177 PARILRQGKITKDDLLAAL 195 >gi|257052622|ref|YP_003130455.1| Sua5/YciO/YrdC/YwlC family protein [Halorhabdus utahensis DSM 12940] gi|256691385|gb|ACV11722.1| Sua5/YciO/YrdC/YwlC family protein [Halorhabdus utahensis DSM 12940] Length = 198 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 59/180 (32%), Positives = 90/180 (50%), Gaps = 8/180 (4%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 +T + L A E + +G + PTETVYGL D+ + AI ++E K+R NPL V+ Sbjct: 1 MTRDSDLTAAAEVVKSGGLVVYPTETVYGLGADALDTAAIEAVFETKRRDRDNPLSLGVA 60 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPC-GF 123 + + S + F PGP+T+V++ D P + T R+P Sbjct: 61 SVEAALDYVSPSVTEQRFMQEFLPGPVTVVVE---GRDPVPDALTGGRDRVGVRIPDHDL 117 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 ++L+E G PL SAN SGQ S+T+ L + I +I+DGG + G ST+V+V Sbjct: 118 ARELLERSG-PLTATSANVSGQPSVTDPAD-LDAEIRTAAGVILDGGETP-GTASTVVDV 174 >gi|212716443|ref|ZP_03324571.1| hypothetical protein BIFCAT_01367 [Bifidobacterium catenulatum DSM 16992] gi|212660696|gb|EEB21271.1| hypothetical protein BIFCAT_01367 [Bifidobacterium catenulatum DSM 16992] Length = 220 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 64/214 (29%), Positives = 107/214 (50%), Gaps = 10/214 (4%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +I +I+D + L +A E + G I IPT+TVYG+A D RN AIR+++ K+RP L Sbjct: 3 EIRAISDES-LAQAVEIVRDGGLIVIPTDTVYGVACDPRNIEAIRKVFAAKQRPKYKSLQ 61 Query: 62 CHVSDISMVKKHASVDPLSLH-LAKLFWPG---PLTLVLDLLSTTDIHPLSTANLKTACF 117 + I ++K P+ L+ L+ +F PG P+ + D + + T Sbjct: 62 VLLPSIESLEKLHLDLPVPLNRLSAMFMPGAFSPIAVAGDNCTLATVRTDPATGKATQGV 121 Query: 118 RVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P +++ T G PLA SANRSG S V + + + L +DGG + + Sbjct: 122 RIPNSAAALRVLRTTG-PLAATSANRSGDESAQTVDEAV-QAFGDAVDLYLDGGATPGHV 179 Query: 177 ESTIVNVQCEKK--VRILRPGGLEIETLKRAISV 208 ST+V + + ILR G + +++A+++ Sbjct: 180 ASTVVAADPHGRDGIAILREGVIREPVIRKALTL 213 >gi|228477561|ref|ZP_04062194.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus salivarius SK126] gi|228250705|gb|EEK09903.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus salivarius SK126] Length = 201 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 59/192 (30%), Positives = 96/192 (50%), Gaps = 8/192 (4%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 E L G + +PTETVYGL + + +A+ +YE+K RP + +V+ + ++ Sbjct: 10 EILADGGAVVLPTETVYGLFAKAMDESAVNHVYELKNRPRDKAMNLNVASYEDILSYSKE 69 Query: 77 DPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134 P L L F PGPLT++L + + + L T FR+P T++LI+ G P Sbjct: 70 QPKYLKQLYDAFLPGPLTIILK--ANDKVPRWINSGLATVGFRLPNHPVTRELIQAEG-P 126 Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194 L PSAN+SG+ S I + + D + +G++STI+++ +ILR Sbjct: 127 LIGPSANKSGEASGRYFDQIRAQFDFQVTGYQDDAAL--LGVDSTILDLSVS-PAKILRQ 183 Query: 195 GGLEIETLKRAI 206 G + E L A+ Sbjct: 184 GKITKEDLLAAL 195 >gi|319947035|ref|ZP_08021269.1| Sua5/YciO/YrdC family protein [Streptococcus australis ATCC 700641] gi|319747083|gb|EFV99342.1| Sua5/YciO/YrdC family protein [Streptococcus australis ATCC 700641] Length = 203 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 65/204 (31%), Positives = 105/204 (51%), Gaps = 13/204 (6%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L+AG + +PTETVYGL + + A+ ++Y +K+RP + ++S ++ ++ P Sbjct: 8 LEAGYAVVLPTETVYGLFAKALDKAAVDQVYALKQRPREKAMNLNISSEEGIRFYSKNQP 67 Query: 79 LSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134 +L+KL F PGPLT++L+ + + + + T FR+P T +LI G P Sbjct: 68 --PYLSKLIASFLPGPLTIILE--ANEKVPAWINSGMATVGFRMPAHPKTLELIHKTG-P 122 Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194 L PSAN SG+ S T + IL + L D ++ G +STI+++ K RILR Sbjct: 123 LIGPSANLSGKASGTQCQQILKELGHGVLGLEDDSFLT--GQDSTILDLTG-PKARILRQ 179 Query: 195 GGL-EIETLKRAISVELEYCVDET 217 G + E +R + E D T Sbjct: 180 GAITRSEIFQRVPEIPFEEEEDVT 203 >gi|253701566|ref|YP_003022755.1| Sua5/YciO/YrdC/YwlC family protein [Geobacter sp. M21] gi|251776416|gb|ACT18997.1| Sua5/YciO/YrdC/YwlC family protein [Geobacter sp. M21] Length = 202 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 49/158 (31%), Positives = 76/158 (48%), Gaps = 4/158 (2%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 K E L G +A PT+T YG+ + I R+Y++K+R P SDIS + ++ Sbjct: 17 KVVEVLKNGGVVAYPTDTTYGIGCSIFSKKGIERIYQVKQRDRKKPFSFICSDISEISRY 76 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYG 132 A V + + PGP T VL+ S + L T +T R+P +++ G Sbjct: 77 ARVSNYAFKQLRRLLPGPYTFVLEANSV--VPDLVTTKQRTVGIRMPDNNICLAIVKELG 134 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 HP+ SAN SG+ I N + + K + L++DGG Sbjct: 135 HPIVTTSANLSGEDPIGNPWQV-EHELGKLLDLVVDGG 171 >gi|68063631|ref|XP_673811.1| hypothetical protein [Plasmodium berghei strain ANKA] gi|56491931|emb|CAI02427.1| hypothetical protein PB300739.00.0 [Plasmodium berghei] Length = 496 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 55/181 (30%), Positives = 95/181 (52%), Gaps = 9/181 (4%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I + N + E + I PTETVYGL +S + +++ ++++K RP +P+I HV Sbjct: 11 IKNDNVKKMLKEHIKKNNLIGFPTETVYGLGGNSLSEISLKNIFKMKNRPISDPIISHVY 70 Query: 66 DISMVKK---HASV-DPLSLHLAKL-FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 DI+ H ++ + +++ + F PGPL+++ + + + TA+ + R+P Sbjct: 71 DIAQAFDQLYHINMYEKYIIYILNMKFSPGPLSIIAK--AKEHLPLILTAHTQFCAVRIP 128 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 K++I+ P+A PSAN+ IS TN H+ + I LI D G IG+EST Sbjct: 129 NNKIAKEIIKICDTPIAAPSANKFQHISPTNSLHVYEEFKDENI-LIFDDGQCDIGIEST 187 Query: 180 I 180 + Sbjct: 188 V 188 >gi|284032940|ref|YP_003382871.1| Sua5/YciO/YrdC/YwlC family protein [Kribbella flavida DSM 17836] gi|283812233|gb|ADB34072.1| Sua5/YciO/YrdC/YwlC family protein [Kribbella flavida DSM 17836] Length = 295 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 61/203 (30%), Positives = 100/203 (49%), Gaps = 17/203 (8%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 A R A + ++AG + +PT+TVYGLA D+ A++RL + K R P +S + + Sbjct: 26 AYRAAVDAIEAGDLVVLPTDTVYGLAADAFKADAVQRLLDAKGRGRDMPPPVLISVVESL 85 Query: 71 KKHASVDP-LSLHLAKLFWPGPLTLVLD-----LLSTTDIHPLSTANLKTACFRVPC-GF 123 A+ P L + FWPG LT++ + D H T RVP Sbjct: 86 DALATDVPEAGRKLCEEFWPGALTVICHAQGSLMWDLGDTH-------GTVALRVPDHEN 138 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 T++L+ G PLA+ SANRSGQ + +V + + + + +DGG G STIV++ Sbjct: 139 TRELLSRTG-PLAVSSANRSGQPAALDV-YDAEEQLADSVAVYLDGGAVSGGEPSTIVDL 196 Query: 184 QCEKKVRILRPGGLEIETLKRAI 206 + ++R G L + +++ + Sbjct: 197 TGDVP-HVVRIGALSMAQIRKVV 218 >gi|225350880|ref|ZP_03741903.1| hypothetical protein BIFPSEUDO_02454 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225158336|gb|EEG71578.1| hypothetical protein BIFPSEUDO_02454 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 238 Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 65/214 (30%), Positives = 106/214 (49%), Gaps = 10/214 (4%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +I +I+D +L +A E + G I IPT+TVYG+A D RN AIR+++ K+RP L Sbjct: 21 EIRTISD-ESLAQAVEIVRDGGLIVIPTDTVYGVACDPRNIEAIRKVFAAKQRPKYKSLQ 79 Query: 62 CHVSDI-SMVKKHASVDPLSLH-LAKLFWPG---PLTLVLDLLSTTDIHPLSTANLKTAC 116 + I SM K H + P+ L+ L+ +F PG P+ + D + + T Sbjct: 80 VLLPSIESMEKLHLDL-PVPLNRLSAMFMPGAFSPIAVADDDCTLATVRTDPATGKVTQG 138 Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P + PLA SANRSG S V + ++ + L +DGG + + Sbjct: 139 VRIPNSTAALRVLRATGPLAATSANRSGDESAQTVDEAV-QALGDAVDLYLDGGATPGHV 197 Query: 177 ESTIVNVQCEKK--VRILRPGGLEIETLKRAISV 208 ST+V + + ILR G + +++A+++ Sbjct: 198 ASTVVAADPHGRDGIAILREGVIHEPVIRKALTL 231 >gi|311064749|ref|YP_003971474.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium bifidum PRL2010] gi|310867068|gb|ADP36437.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium bifidum PRL2010] Length = 233 Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 63/215 (29%), Positives = 105/215 (48%), Gaps = 14/215 (6%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M + + +L +A + G + IPT+TVYG+A D RN AI R+Y++K RP L Sbjct: 15 MSAVRKVNEESLAEAASVIAGGGLVVIPTDTVYGVACDPRNEAAIDRIYQVKSRPRFKAL 74 Query: 61 ICHVSDISMVKKHASVDPLSLH-LAKLFWPG---PLTLVLD--LLSTTDIHPLSTANLKT 114 ++ + + P L+ LA F PG P+ + + L+T P +T Sbjct: 75 QVLLASVDQLDGLGLDLPSPLNRLAAQFLPGAFSPIAVAREDCTLATVSATP---QGRRT 131 Query: 115 ACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173 RVP T +++ G PLA SANRSG S V+ + + ++ L +DGG ++ Sbjct: 132 QGIRVPNSALTLRILNELG-PLAASSANRSGDESAQTVEEAV-QAFGDDVQLYLDGGPTQ 189 Query: 174 IGLESTIVNVQCEKK--VRILRPGGLEIETLKRAI 206 + ST+V ++ + ILR G + +++A+ Sbjct: 190 GHVASTVVAADPHERDGIVILREGVIPQPVVRKAV 224 >gi|288905238|ref|YP_003430460.1| translation factor (SUA5) [Streptococcus gallolyticus UCN34] gi|288731964|emb|CBI13529.1| Putative translation factor (SUA5) [Streptococcus gallolyticus UCN34] Length = 199 Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 62/188 (32%), Positives = 90/188 (47%), Gaps = 22/188 (11%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L G + +PTETVYGL N A+ +Y++K+RP + +V+D + + P Sbjct: 8 LQNGGAVILPTETVYGLFAQVMNEKAVEHVYQLKRRPKDKAMNLNVADFETILAFSKQQP 67 Query: 79 LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136 L L F PGPLT++L + + + L T FR+P T KLI+ G PL Sbjct: 68 SYLKKLYDAFLPGPLTIILQ--ANDRVPAWINSGLSTIGFRIPNHPQTLKLIKKAG-PLI 124 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI-------GLESTIVNVQCEKKV 189 PSAN SGQ S + KEI G ++ G++STI+++ K Sbjct: 125 GPSANISGQ---------ESGKVFKEIQKQFGGTVTGFADDAALTGVDSTILDL-SGKTA 174 Query: 190 RILRPGGL 197 RILR G + Sbjct: 175 RILRQGAI 182 >gi|284992526|ref|YP_003411080.1| Sua5/YciO/YrdC/YwlC family protein [Geodermatophilus obscurus DSM 43160] gi|284065771|gb|ADB76709.1| Sua5/YciO/YrdC/YwlC family protein [Geodermatophilus obscurus DSM 43160] Length = 224 Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 92/183 (50%), Gaps = 5/183 (2%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS-MVKKHASVDPLSLHL 83 + +PT+TVYG+A D+ P+A+ L K R P+ + + S +V V P++ L Sbjct: 41 VLMPTDTVYGVAADAFTPSAVAALLAAKNRGRTMPVPVLIGEASTLVGLVTVVPPVATAL 100 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRS 143 A+ FWPG LTLVL+ S+ L A T R+P + + PLA+ SANRS Sbjct: 101 AEAFWPGGLTLVLEHASSLAWD-LGDAE-GTVAVRLPDDEVARDLLRRTGPLAVSSANRS 158 Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203 G+ + T + + + +++DGG STIV+ R+LR G + ++ L+ Sbjct: 159 GRPAATTADEAV-AQLGVHAAVVLDGGPRAGSAASTIVDCTVPAP-RVLRVGAIPVDRLR 216 Query: 204 RAI 206 + Sbjct: 217 EVV 219 >gi|224283868|ref|ZP_03647190.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium bifidum NCIMB 41171] Length = 229 Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 63/215 (29%), Positives = 105/215 (48%), Gaps = 14/215 (6%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M + + +L +A + G + IPT+TVYG+A D RN AI R+Y++K RP L Sbjct: 11 MSAVRKVNEESLAEAASVIAGGGLVVIPTDTVYGVACDPRNEAAIDRIYQVKSRPRFKAL 70 Query: 61 ICHVSDISMVKKHASVDPLSLH-LAKLFWPG---PLTLVLD--LLSTTDIHPLSTANLKT 114 ++ + + P L+ LA F PG P+ + + L+T P +T Sbjct: 71 QVLLASVDQLDGLGLDLPSPLNRLAAQFLPGAFSPIAVAREDCTLATVSATP---QGRRT 127 Query: 115 ACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173 RVP T +++ G PLA SANRSG S V+ + + ++ L +DGG ++ Sbjct: 128 QGIRVPNSALTLRILNELG-PLAASSANRSGDESAQTVEEAV-QAFGDDVQLYLDGGPTQ 185 Query: 174 IGLESTIVNVQCEKK--VRILRPGGLEIETLKRAI 206 + ST+V ++ + ILR G + +++A+ Sbjct: 186 GHVASTVVAADPHERDGIVILREGVIPQPVVRKAV 220 >gi|30908964|gb|AAP37032.1| ischemia/reperfusion inducible protein [Mus musculus] Length = 263 Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 65/198 (32%), Positives = 100/198 (50%), Gaps = 20/198 (10%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ALR A L AG +A+PT+T+YGLA + + A+ +Y +K R PL + ++ Sbjct: 51 TEALRAAVAELRAGAVVAVPTDTLYGLACSASSSAALSCVYRLKGRSEAKPLAVCLGRVA 110 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVPC-GFTK 125 V ++ V L LF PGP+TLV++ D++P + + R+P F Sbjct: 111 DVYRYCQVRVPRELLEDLF-PGPVTLVMERSEELNKDLNPFT----RLVGIRIPDHAFML 165 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--------LE 177 L + +G PLA+ SAN S Q S +V+ + + L+IDGG IG L Sbjct: 166 DLAQMFGGPLALTSANLSSQASSLSVEEF--QDLWPHLSLVIDGG--PIGDSQSPECRLG 221 Query: 178 STIVNVQCEKKVRILRPG 195 ST+V++ K I+RPG Sbjct: 222 STVVDLSVPGKFGIIRPG 239 >gi|298252615|ref|ZP_06976409.1| putative translation factor SUA5 [Gardnerella vaginalis 5-1] gi|297532979|gb|EFH71863.1| putative translation factor SUA5 [Gardnerella vaginalis 5-1] Length = 210 Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 63/210 (30%), Positives = 102/210 (48%), Gaps = 19/210 (9%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A + ++ G I +PT+TVYG+A D N A+ ++YE+K+RP L +S++ ++K Sbjct: 2 AAQIINEGGVIVVPTDTVYGVACDPFNEAAVAKIYELKRRPRTKALQILMSEVGDLEKLG 61 Query: 75 SVDPLSLH-LAKLFWPGPLTLV------------LDLLSTTDIHPLSTANLK-TACFRVP 120 P L L K F PG + + L T + + A + T RVP Sbjct: 62 LYLPSPLDILGKKFLPGGYSPIARAKKDSVASNLATLCKTNETDAQNDAKTQATQGVRVP 121 Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 C +++ G PLA SANRSG S +V+ ++ EIPL ++ G ++ + ST Sbjct: 122 DCPELMQILRVTG-PLAASSANRSGNESADSVEEAF-AAFGNEIPLYLNAGPTRSHVAST 179 Query: 180 IVNVQCEKK--VRILRPGGLEIETLKRAIS 207 +V K + ILR G + ++ A+S Sbjct: 180 VVGADSSDKDGIVILREGVISESEIRNALS 209 >gi|161528935|ref|YP_001582761.1| Sua5/YciO/YrdC/YwlC family protein [Nitrosopumilus maritimus SCM1] gi|160340236|gb|ABX13323.1| Sua5/YciO/YrdC/YwlC family protein [Nitrosopumilus maritimus SCM1] Length = 198 Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 60/198 (30%), Positives = 97/198 (48%), Gaps = 11/198 (5%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + KA + ++ G + PT+TVYG+ + + + +++YEIK R P V Sbjct: 6 DKEGIEKASKVIEDGGIVIFPTDTVYGIGCNPYSKESAKKVYEIKSRDFSKPFPVLVYSK 65 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP---CGFT 124 + + A D +S L + FWPG LT++L L L+ ++ RVP C T Sbjct: 66 EIASQIAEFDEISEKLVEKFWPGQLTILLKLKDEKLKESLNLSD--KIALRVPNHKC--T 121 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 L+E H L SAN SGQ S + + + S + + +DGG ESTI+ ++ Sbjct: 122 LSLLEKC-HYLIGTSANVSGQPSFFDPQECIKS--VENYDVFVDGGTITSKGESTIIAIE 178 Query: 185 CEKKVRILRPGGLEIETL 202 + K++I+R G L E + Sbjct: 179 -DGKIKIIREGSLSKEEI 195 >gi|150399931|ref|YP_001323698.1| Sua5/YciO/YrdC/YwlC family protein [Methanococcus vannielii SB] gi|150012634|gb|ABR55086.1| Sua5/YciO/YrdC/YwlC family protein [Methanococcus vannielii SB] Length = 205 Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 53/179 (29%), Positives = 93/179 (51%), Gaps = 8/179 (4%) Query: 29 TETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFW 88 T+T+YGL+ ++ + AI ++Y+IKKR P+ + + V+K+ VD + L F Sbjct: 35 TDTLYGLSTNALDENAIEKIYKIKKRDPNKPISISLGEKYQVEKYVYVDDTARKLIDKFM 94 Query: 89 PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISI 148 PGP+T++ L DI P R+P + I PL SAN SG++S Sbjct: 95 PGPITII---LKKKDILP-DILGKNDVGVRIPDNDVIRKISVV--PLTTTSANISGEVSP 148 Query: 149 TNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS 207 ++ + + +++ LIID G K ++STI+ V + K+ ++R G + E + +A+ Sbjct: 149 IALEEV-DPKVKEKVDLIIDSGTCKHRMQSTIIKV-IDGKIELIREGKIPFEDILKALE 205 >gi|57239024|ref|YP_180160.1| hypothetical protein Erum2950 [Ehrlichia ruminantium str. Welgevonden] gi|58578965|ref|YP_197177.1| hypothetical protein ERWE_CDS_03010 [Ehrlichia ruminantium str. Welgevonden] gi|57161103|emb|CAH58012.1| conserved hypothetical protein [Ehrlichia ruminantium str. Welgevonden] gi|58417591|emb|CAI26795.1| Conserved hypothetical protein (putative translation factor SUA5 family) [Ehrlichia ruminantium str. Welgevonden] Length = 199 Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 59/203 (29%), Positives = 101/203 (49%), Gaps = 10/203 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + KA E L I PTETVY LA D+ + I+++Y+IK RP P+ +S+I +K Sbjct: 2 ISKAVEALKNKQLICFPTETVYALAGDAYSIEVIQKIYKIKNRPYNKPVSLLLSNIDQIK 61 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 + +++ + ++ + PGP+T +L + + + N R+P ++ Sbjct: 62 QFSNLTEHTAYIIQQLSPGPITFILPIHNYGKLPKQFFYN--KIGIRIPNHPIALAILNN 119 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 + HP+ S N SGQ +V I S +I K I IID G ST++++ K Sbjct: 120 FDHPITATSVNISGQQDAISVDQI-SDNIKKNISFIIDNNRLVHGTASTVIDLTSYK--- 175 Query: 191 ILRPGGL---EIETLKRAISVEL 210 ILR G + +I+ + + I++ L Sbjct: 176 ILRKGAVTKQKIQEILKKINIIL 198 >gi|55822721|ref|YP_141162.1| Sua5/YciO/YrdC family protein [Streptococcus thermophilus CNRZ1066] gi|55738706|gb|AAV62347.1| hypothetical protein, Sua5/YciO/YrdC family protein [Streptococcus thermophilus CNRZ1066] Length = 201 Score = 75.5 bits (184), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 64/199 (32%), Positives = 99/199 (49%), Gaps = 14/199 (7%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDISM 69 ++ E L+ G + +PTETVYGL + + A+ +YE+K RP AMN + DI Sbjct: 6 KQLRETLNNGEAVVLPTETVYGLFAKALDEKAVDYVYELKNRPRDKAMNLNVASYEDILF 65 Query: 70 VKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 K P L L F PGPLT++L + + + L T FR+P T++L Sbjct: 66 YSKEQ---PKYLKQLYDAFLPGPLTIILK--ANDQVPRWINSGLATVGFRLPNHPVTREL 120 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I+ G PL PSAN+SG+ S + I + + D + +G++STI+++ Sbjct: 121 IQAEG-PLIGPSANKSGKESGRHFDDIRAQFDFQVTGYQDDNAL--LGVDSTILDLSV-S 176 Query: 188 KVRILRPGGLEIETLKRAI 206 RILR G + + L A+ Sbjct: 177 PARILRQGKITKDDLLAAL 195 >gi|308235422|ref|ZP_07666159.1| Sua5/YciO/YrdC/YwlC family protein [Gardnerella vaginalis ATCC 14018] gi|311114829|ref|YP_003986050.1| Sua5/YciO/YrdC/YwlC family protein [Gardnerella vaginalis ATCC 14019] gi|310946323|gb|ADP39027.1| Sua5/YciO/YrdC/YwlC family protein [Gardnerella vaginalis ATCC 14019] Length = 220 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 66/218 (30%), Positives = 111/218 (50%), Gaps = 19/218 (8%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AM 57 M + + +L+ A + ++AG I +PT+TVYG+A D N A+ ++Y++K+RP A+ Sbjct: 1 MSKICTINEESLQLAAQIINAGGVIVVPTDTVYGVACDPFNEDAVAKIYQLKRRPRTKAL 60 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPG---PLTLVLDLLSTTDIHPLSTANLK- 113 L+ VSD+ + + +PL + LA+ F PG P+ T + L A+ Sbjct: 61 QILMSSVSDLEKLGLYLP-NPLDV-LAEKFLPGGYSPIARAKKDSVATRLATLCKADESS 118 Query: 114 -----TACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 T RVP C +++ G PLA SANRSG S + + + ++ EIPL + Sbjct: 119 EKCEATQGVRVPDCPELMQILRVTG-PLAASSANRSGNESADSAEEAV-AAFGYEIPLYL 176 Query: 168 DGGISKIGLESTIVNVQCEKK--VRILRPGGLEIETLK 203 + G ++ + ST+V K + ILR G + E ++ Sbjct: 177 NAGPTRSHVASTVVGADASDKDGIVILREGVISEEQIR 214 >gi|254302246|ref|ZP_04969604.1| possible translation factor Sua5 [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322438|gb|EDK87688.1| possible translation factor Sua5 [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 217 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 61/179 (34%), Positives = 90/179 (50%), Gaps = 9/179 (5%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD---- 77 G I PT+TVYGL N +I +Y K R +PLI +S + V++ A V Sbjct: 28 GSLIIYPTDTVYGLGAIVTNEQSINNVYLAKSRSFTSPLIALLSSVDKVEEVAYVSDKNK 87 Query: 78 PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLA 136 L LAK FWPG LT++L I + + T R+P K+I+ G LA Sbjct: 88 ELLDKLAKAFWPGALTVILK--RKEHIPSIMVSGGDTIGVRIPNLDLAIKIIDLAGGILA 145 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 SAN SG+ + + LS +I ++ ++ID G K+G STI+++ + +ILR G Sbjct: 146 TTSANISGEATPKSYDE-LSEAIKSKVDILIDSGECKLGEASTIIDLTSDVP-KILRKG 202 >gi|289167968|ref|YP_003446237.1| hypothetical protein smi_1125 [Streptococcus mitis B6] gi|288907535|emb|CBJ22372.1| conserved hypothetical protein [Streptococcus mitis B6] Length = 209 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 96/186 (51%), Gaps = 8/186 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L+ G + +PTETVYGL + + + +Y++K+RP L +++ + + + P Sbjct: 18 LENGGAVVLPTETVYGLFAKALDEKVVNHVYQLKRRPRDKALNLNIASLEDILNFSKNQP 77 Query: 79 LSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136 L L + F PGPLT++L+ + + + L T FR+P T LI G PL Sbjct: 78 TYLQKLVETFLPGPLTIILE--ANDRVPYWVNSGLATVGFRMPSHPITLDLIRETG-PLI 134 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SG+ S IL + + L D ++ G +STI+++ + KV+ILR G Sbjct: 135 GPSANISGRASGVTFAQILEDFDQEVLGLEDDSFLT--GQDSTILDLSGD-KVKILRQGA 191 Query: 197 LEIETL 202 ++ E + Sbjct: 192 IKREDI 197 >gi|213691485|ref|YP_002322071.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213522946|gb|ACJ51693.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 233 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 64/215 (29%), Positives = 98/215 (45%), Gaps = 20/215 (9%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 + +TD + + A D GL + IPT+TVYG+A D RN AI R+Y +K+RP L Sbjct: 18 LKVTDESLAQAARVIRDGGL-VVIPTDTVYGVACDPRNKAAIDRIYRLKRRPRYKALQVL 76 Query: 64 VSDISMVKKHASVDPLSLH-LAKLFWPG---------PLTLVLDLLSTTDIHPLSTANLK 113 ++ + + + P L+ L+ F PG P + L T D P Sbjct: 77 LASTDQLDELSLDLPSPLNRLSAAFLPGAFSPIAVARPDCTLETLADTADGRP------G 130 Query: 114 TACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173 T R+P I PLA SANRSG S V+ + + E+ L +DGG ++ Sbjct: 131 TQGIRIPNSALCLAILKATGPLAASSANRSGDESAQTVQEAV-DAFGSEVDLYLDGGPTQ 189 Query: 174 IGLESTIVNVQ--CEKKVRILRPGGLEIETLKRAI 206 + ST+V + ILR G + +++A+ Sbjct: 190 GHVSSTVVKADPYARDGIEILREGVIAQNVIRKAL 224 >gi|195978151|ref|YP_002123395.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974856|gb|ACG62382.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 197 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 64/188 (34%), Positives = 93/188 (49%), Gaps = 8/188 (4%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 E + AG + +PTETVYGL + N A+ +Y +KKRP + +V+D + + Sbjct: 7 ETIKAGGALILPTETVYGLFAQALNEEAVNAVYRLKKRPCDKAMNLNVADFESILAFSKQ 66 Query: 77 DPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134 P L L + F PGPLT++L + T + LKT FR+P T ++I G P Sbjct: 67 QPAYLSKLYEAFLPGPLTIILKANAKTPYW--INSGLKTVGFRLPSHPLTAEIIRATG-P 123 Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194 L PSAN SG S I+ + K D ++ G +STI+++ KV ILR Sbjct: 124 LIGPSANLSGSKSGKCFNDIVKAFDGKVDGYADDAYLT--GKDSTILDLSSP-KVSILRQ 180 Query: 195 GGLEIETL 202 G + E L Sbjct: 181 GAITKEQL 188 >gi|239621650|ref|ZP_04664681.1| conserved protein in the Sua5/YciO/YrdC family protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|296454708|ref|YP_003661851.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium longum subsp. longum JDM301] gi|317482071|ref|ZP_07941095.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium sp. 12_1_47BFAA] gi|239515525|gb|EEQ55392.1| conserved protein in the Sua5/YciO/YrdC family protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|296184139|gb|ADH01021.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium longum subsp. longum JDM301] gi|316916430|gb|EFV37828.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium sp. 12_1_47BFAA] Length = 233 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 64/215 (29%), Positives = 97/215 (45%), Gaps = 20/215 (9%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 + +TD + + A D GL + IPT+TVYG+A D RN AI R+Y +K+RP L Sbjct: 18 LKVTDESLAQAARVIRDGGL-VVIPTDTVYGVACDPRNKAAIDRIYRLKRRPRYKALQVL 76 Query: 64 VSDISMVKKHASVDPLSLH-LAKLFWPG---------PLTLVLDLLSTTDIHPLSTANLK 113 ++ + + P L+ L+ F PG P + L T D P Sbjct: 77 LASTDQLDELGLDLPSPLNRLSAAFLPGAFSPIAVARPDCTLETLADTADGRP------G 130 Query: 114 TACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173 T R+P I PLA SANRSG S V+ + + E+ L +DGG ++ Sbjct: 131 TQGIRIPNSALCLAILKATGPLAASSANRSGDESAQTVQEAV-DAFGSEVDLYLDGGPTQ 189 Query: 174 IGLESTIVNVQ--CEKKVRILRPGGLEIETLKRAI 206 + ST+V + ILR G + +++A+ Sbjct: 190 GHVSSTVVKADPYARDGIEILREGVIAQNVIRKAL 224 >gi|261338131|ref|ZP_05966015.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium gallicum DSM 20093] gi|270276759|gb|EFA22613.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium gallicum DSM 20093] Length = 211 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/211 (27%), Positives = 107/211 (50%), Gaps = 7/211 (3%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 +QI+ I + +L + + G + +PT+TVYG+A + + AI R++ +K+RPA L Sbjct: 2 VQILPINE-ESLTLVADVVSRGGIVVVPTDTVYGVACNPHDEQAIARIFAVKQRPATKSL 60 Query: 61 ICHVSDISMVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPL--STANLKTACF 117 ++D+ + + P L L + F PG + + ++ + L ++ + T Sbjct: 61 QILMADVQALDELGLALPTPLDRLGERFLPGAFSPIAVMVHDRGLKTLKQTSDGVLTQGV 120 Query: 118 RVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 RVP + I PLA SAN+SGQ S +V+ + ++ E+ L +DGG + + Sbjct: 121 RVPDSDACRAILRVTGPLACSSANKSGQQSAHSVQEAV-AAFGDEVDLYVDGGPTVSHVA 179 Query: 178 STIVNVQCEKK--VRILRPGGLEIETLKRAI 206 ST+V +RI+R G L+ +++ A+ Sbjct: 180 STVVEADPNDADGIRIIREGRLDEASVRAAL 210 >gi|320457559|dbj|BAJ68180.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 224 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 64/215 (29%), Positives = 98/215 (45%), Gaps = 20/215 (9%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 + +TD + + A D GL + IPT+TVYG+A D RN AI R+Y +K+RP L Sbjct: 9 LKVTDESLAQAARVIRDGGL-VVIPTDTVYGVACDPRNKAAIDRIYRLKRRPRYKALQVL 67 Query: 64 VSDISMVKKHASVDPLSLH-LAKLFWPG---------PLTLVLDLLSTTDIHPLSTANLK 113 ++ + + + P L+ L+ F PG P + L T D P Sbjct: 68 LASTDQLDELSLDLPSPLNRLSAAFLPGAFSPIAVARPDCTLETLADTADGRP------G 121 Query: 114 TACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173 T R+P I PLA SANRSG S V+ + + E+ L +DGG ++ Sbjct: 122 TQGIRIPNSALCLAILKATGPLAASSANRSGDESAQTVQEAV-DAFGSEVDLYLDGGPTQ 180 Query: 174 IGLESTIVNVQ--CEKKVRILRPGGLEIETLKRAI 206 + ST+V + ILR G + +++A+ Sbjct: 181 GHVSSTVVKADPYARDGIEILREGVIAQNVIRKAL 215 >gi|218654185|emb|CAB55118.2| C. elegans protein Y48C3A.18a, confirmed by transcript evidence [Caenorhabditis elegans] Length = 216 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 70/199 (35%), Positives = 101/199 (50%), Gaps = 14/199 (7%) Query: 16 CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL-ICHVSDISMVKKHA 74 C FL G+ +A+PT+T+YG++ + RLY +K+RP PL I S +M K Sbjct: 24 CVFLRGGI-VALPTDTLYGISTLLQYSD---RLYALKQRPYEKPLGIFLPSPTAM--KLV 77 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGH 133 S +S LA PGP+TL+ + L + + AC RVP C + + G Sbjct: 78 SRQTISDELANCLLPGPVTLMFERLPCLPAE-FNPGVVNVAC-RVPDCPIVSTICKKLGQ 135 Query: 134 PLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGG-ISKIGLESTIVNVQCEKKVRI 191 PLA SAN SG ++ T++ H + I LI+D G I G STIV++ E RI Sbjct: 136 PLAQTSANVSGSSLNPTSIDHF--RDLHPNIDLILDAGSIISSGEGSTIVDLTVESGFRI 193 Query: 192 LRPGGLEIETLKRAISVEL 210 +R G E ET+++ S L Sbjct: 194 VRSGCAEKETMQKLKSFGL 212 >gi|148698400|gb|EDL30347.1| yrdC domain containing (E.coli) [Mus musculus] Length = 263 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 65/198 (32%), Positives = 100/198 (50%), Gaps = 20/198 (10%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ALR A L AG +A+PT+T+YGLA + + A+ +Y +K R PL + ++ Sbjct: 51 TEALRAAVAELRAGAVVAVPTDTLYGLACSASSSAALSCVYRLKGRSEAKPLAVCLGRVA 110 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVPC-GFTK 125 V ++ V L LF PGP+TLV++ D++P + + R+P F Sbjct: 111 DVYRYCQVRVPRELLEDLF-PGPVTLVMERSEELNKDLNPFT----RLVGIRIPDHAFML 165 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--------LE 177 L + +G PLA+ SAN S Q S +V+ + + L+IDGG IG L Sbjct: 166 DLAQMFGGPLALTSANLSSQASSLSVEEF--QDLWPHLSLVIDGG--PIGDSQSPECRLG 221 Query: 178 STIVNVQCEKKVRILRPG 195 ST+V++ K I+RPG Sbjct: 222 STVVDLSVPGKFGIIRPG 239 >gi|23466265|ref|NP_696868.1| Sua5/YciO/YrdC family protein [Bifidobacterium longum NCC2705] gi|189440759|ref|YP_001955840.1| putative translation factor [Bifidobacterium longum DJO10A] gi|227546618|ref|ZP_03976667.1| translation factor Sua5 [Bifidobacterium longum subsp. infantis ATCC 55813] gi|312134012|ref|YP_004001351.1| translation factor [Bifidobacterium longum subsp. longum BBMN68] gi|322689784|ref|YP_004209518.1| hypothetical protein BLIF_1602 [Bifidobacterium longum subsp. infantis 157F] gi|322691730|ref|YP_004221300.1| hypothetical protein BLLJ_1541 [Bifidobacterium longum subsp. longum JCM 1217] gi|23327014|gb|AAN25504.1| conserved protein in the Sua5/YciO/YrdC family [Bifidobacterium longum NCC2705] gi|189429194|gb|ACD99342.1| Putative translation factor [Bifidobacterium longum DJO10A] gi|227212935|gb|EEI80814.1| translation factor Sua5 [Bifidobacterium longum subsp. infantis ATCC 55813] gi|311773317|gb|ADQ02805.1| Putative translation factor [Bifidobacterium longum subsp. longum BBMN68] gi|320456586|dbj|BAJ67208.1| conserved hypothetical protein [Bifidobacterium longum subsp. longum JCM 1217] gi|320461120|dbj|BAJ71740.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis 157F] Length = 224 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 64/215 (29%), Positives = 97/215 (45%), Gaps = 20/215 (9%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 + +TD + + A D GL + IPT+TVYG+A D RN AI R+Y +K+RP L Sbjct: 9 LKVTDESLAQAARVIRDGGL-VVIPTDTVYGVACDPRNKAAIDRIYRLKRRPRYKALQVL 67 Query: 64 VSDISMVKKHASVDPLSLH-LAKLFWPG---------PLTLVLDLLSTTDIHPLSTANLK 113 ++ + + P L+ L+ F PG P + L T D P Sbjct: 68 LASTDQLDELGLDLPSPLNRLSAAFLPGAFSPIAVARPDCTLETLADTADGRP------G 121 Query: 114 TACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173 T R+P I PLA SANRSG S V+ + + E+ L +DGG ++ Sbjct: 122 TQGIRIPNSALCLAILKATGPLAASSANRSGDESAQTVQEAV-DAFGSEVDLYLDGGPTQ 180 Query: 174 IGLESTIVNVQ--CEKKVRILRPGGLEIETLKRAI 206 + ST+V + ILR G + +++A+ Sbjct: 181 GHVSSTVVKADPYARDGIEILREGVIAQNVIRKAL 215 >gi|315426641|dbj|BAJ48267.1| translation factor [Candidatus Caldiarchaeum subterraneum] Length = 194 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 62/198 (31%), Positives = 96/198 (48%), Gaps = 6/198 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + A E + G I PT+TVYG+ D A+ R+ K+R P VSD + Sbjct: 1 MNSAAEAVKRGGVIVYPTDTVYGIGCDPFKIEAVERVIHAKRR-EKKPAPVLVSDFDQLH 59 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETY 131 + A L A WPG +T+V + ++ L TA KT R+P LI Sbjct: 60 EVAVPTEEELEAAIRLWPGAVTIV--MAKKPELPELVTAGEKTVGVRMPAHVVPLLIMQK 117 Query: 132 GH-PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 H PL SAN S + S T + I SS+ +++ +++D G + L ST+V +Q + +V Sbjct: 118 AHRPLVGTSANISDEPSATTIDQI-PSSVLEKVDVVVDAGRTHHLLPSTVVKIQ-DGQVV 175 Query: 191 ILRPGGLEIETLKRAISV 208 +LR G L E +++ I + Sbjct: 176 VLREGVLSREEIEKRIGL 193 >gi|70945247|ref|XP_742464.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56521462|emb|CAH84674.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi] Length = 543 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 11/163 (6%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM-VKKHASVDPLSLHL 83 I PTETVYGL +S + +++ ++++K RP +P+I HV DI+ + ++ ++ Sbjct: 30 IGFPTETVYGLGGNSLSEISLKNIFKMKNRPVSDPIISHVYDIAQAFDQLYHINMYEKYI 89 Query: 84 AKL----FWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCG-FTKKLIETYGHPLAI 137 + F PGPL+++ + PL TA+ + R+P +++I+ P+A Sbjct: 90 IYILNSNFSPGPLSVI---AKAKEYLPLILTAHTQFCAVRIPNNKIAREIIKICNIPIAA 146 Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 PSAN+ IS TN H+ + I LI D G IG+EST+ Sbjct: 147 PSANKFQHISPTNSLHVYEEFKDENI-LIFDDGQCDIGIESTV 188 >gi|237743716|ref|ZP_04574197.1| SUA5 protein [Fusobacterium sp. 7_1] gi|256028220|ref|ZP_05442054.1| SUA5 protein [Fusobacterium sp. D11] gi|289766152|ref|ZP_06525530.1| SUA5 protein [Fusobacterium sp. D11] gi|229432747|gb|EEO42959.1| SUA5 protein [Fusobacterium sp. 7_1] gi|289717707|gb|EFD81719.1| SUA5 protein [Fusobacterium sp. D11] Length = 217 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 61/179 (34%), Positives = 90/179 (50%), Gaps = 9/179 (5%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP--- 78 G I PT+TVYGL N +I +Y K R +PLI +S + V++ A V Sbjct: 28 GSLIIYPTDTVYGLGAVITNEQSINNVYLAKSRSFSSPLIALLSSVDKVEEVAYVSDKNK 87 Query: 79 -LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLA 136 L LAK FWPG LT++L I + + T R+P K+I+ G LA Sbjct: 88 NLLKKLAKAFWPGALTVILK--RKEHIPSIMVSGGDTIGVRIPNLDLAIKIIDLAGGILA 145 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 SAN SG+ + + LS +I ++ ++ID G K+G STI+++ + +ILR G Sbjct: 146 TTSANISGEATPKSYDE-LSETIKSKVDILIDSGKCKLGEASTIIDLTSDVP-KILRKG 202 >gi|247494089|ref|NP_705794.2| yrdC domain-containing protein, mitochondrial precursor [Mus musculus] gi|123794224|sp|Q3U5F4|YRDC_MOUSE RecName: Full=YrdC domain-containing protein, mitochondrial; AltName: Full=Ischemia/reperfusion-inducible protein; Short=mIRIP; Flags: Precursor gi|74146564|dbj|BAE32125.1| unnamed protein product [Mus musculus] Length = 280 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 65/198 (32%), Positives = 100/198 (50%), Gaps = 20/198 (10%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ALR A L AG +A+PT+T+YGLA + + A+ +Y +K R PL + ++ Sbjct: 68 TEALRAAVAELRAGAVVAVPTDTLYGLACSASSSAALSCVYRLKGRSEAKPLAVCLGRVA 127 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVPC-GFTK 125 V ++ V L LF PGP+TLV++ D++P + + R+P F Sbjct: 128 DVYRYCQVRVPRELLEDLF-PGPVTLVMERSEELNKDLNPFT----RLVGIRIPDHAFML 182 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--------LE 177 L + +G PLA+ SAN S Q S +V+ + + L+IDGG IG L Sbjct: 183 DLAQMFGGPLALTSANLSSQASSLSVEEF--QDLWPHLSLVIDGG--PIGDSQSPECRLG 238 Query: 178 STIVNVQCEKKVRILRPG 195 ST+V++ K I+RPG Sbjct: 239 STVVDLSVPGKFGIIRPG 256 >gi|23274116|gb|AAH23823.1| YrdC domain containing (E.coli) [Mus musculus] Length = 263 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 65/198 (32%), Positives = 100/198 (50%), Gaps = 20/198 (10%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ALR A L AG +A+PT+T+YGLA + + A+ +Y +K R PL + ++ Sbjct: 51 TEALRAAVAELRAGAVVAVPTDTLYGLACSASSSAALSCVYRLKGRSEAKPLAVCLGRVA 110 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVPC-GFTK 125 V ++ V L LF PGP+TLV++ D++P + + R+P F Sbjct: 111 DVYRYCQVRVPRELLEDLF-PGPVTLVMERSEELNKDLNPFT----RLVGIRIPDHAFML 165 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--------LE 177 L + +G PLA+ SAN S Q S +V+ + + L+IDGG IG L Sbjct: 166 DLAQMFGGPLALTSANLSSQASSLSVEEF--QDLWPHLSLVIDGG--PIGDSQSPECRLG 221 Query: 178 STIVNVQCEKKVRILRPG 195 ST+V++ K I+RPG Sbjct: 222 STVVDLSVPGKFGIIRPG 239 >gi|123243915|emb|CAM16101.1| yrdC domain containing (E.coli) [Mus musculus] Length = 263 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 65/198 (32%), Positives = 100/198 (50%), Gaps = 20/198 (10%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ALR A L AG +A+PT+T+YGLA + + A+ +Y +K R PL + ++ Sbjct: 51 TEALRAAVAELRAGAVVAVPTDTLYGLACSASSSAALSCVYRLKGRSEAKPLAVCLGRVA 110 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVPC-GFTK 125 V ++ V L LF PGP+TLV++ D++P + + R+P F Sbjct: 111 DVYRYCQVRVPRELLEDLF-PGPVTLVMERSEELNKDLNPFT----RLVGIRIPDHAFML 165 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--------LE 177 L + +G PLA+ SAN S Q S +V+ + + L+IDGG IG L Sbjct: 166 DLAQMFGGPLALTSANLSSQASSLSVEEF--QDLWPHLSLVIDGG--PIGDSQSPECRLG 221 Query: 178 STIVNVQCEKKVRILRPG 195 ST+V++ K I+RPG Sbjct: 222 STVVDLSVPGKFGIIRPG 239 >gi|326933011|ref|XP_003212603.1| PREDICTED: yrdC domain-containing protein, mitochondrial-like [Meleagris gallopavo] Length = 243 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 93/188 (49%), Gaps = 20/188 (10%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L G +A+PT+TVYG+A +++ A+R +Y +K R PL + D+ + ++ V+ Sbjct: 44 LQQGGLVAVPTDTVYGVACLAQDSRAVRSIYSLKGRNGTKPLAICLGDVENIYRYCHVNV 103 Query: 79 LSLHLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPL 135 L L PGP+TLVL D++P ++ R+P F ++L PL Sbjct: 104 PDELLQDLL-PGPVTLVLKRSEELNKDLNPFTS----LVGVRIPNHPFIRELARACPGPL 158 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--------LESTIVNVQCEK 187 A+ SAN S Q S V + ++ L++DGG IG L ST+V++ Sbjct: 159 ALTSANVSSQASTLTVSEF--QDLWPQLSLVVDGG--PIGDVQSPECRLGSTVVDLSVSG 214 Query: 188 KVRILRPG 195 K I+RPG Sbjct: 215 KFTIIRPG 222 >gi|225868515|ref|YP_002744463.1| hypothetical protein SZO_09360 [Streptococcus equi subsp. zooepidemicus] gi|225701791|emb|CAW99204.1| conserved hypothetical protein [Streptococcus equi subsp. zooepidemicus] Length = 197 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 63/186 (33%), Positives = 93/186 (50%), Gaps = 8/186 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 + AG + +PTETVYGL + N A+ +Y +KKRP + +V+D + + P Sbjct: 9 IKAGGALILPTETVYGLFAQALNEEAVNAVYRLKKRPRDKAMNLNVADFESILAFSKQQP 68 Query: 79 LSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136 L+ L + F PGPLT++L + T + LKT FR+P T ++I G PL Sbjct: 69 AYLNKLYEAFLPGPLTIILKANAQTPYW--INSGLKTVGFRLPSHPLTAEIIRATG-PLI 125 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SG S I+ + K D ++ G +STI+++ KV ILR G Sbjct: 126 GPSANLSGSKSGKCFNDIVKAFDGKVDGYADDAYLT--GKDSTILDLSSP-KVSILRQGA 182 Query: 197 LEIETL 202 + E L Sbjct: 183 ITKEQL 188 >gi|17537239|ref|NP_496826.1| hypothetical protein Y48C3A.18 [Caenorhabditis elegans] Length = 244 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 71/201 (35%), Positives = 103/201 (51%), Gaps = 18/201 (8%) Query: 16 CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL-ICHVSDISMVKKHA 74 C FL G+ +A+PT+T+YG++ + RLY +K+RP PL I S +M K Sbjct: 24 CVFLRGGI-VALPTDTLYGISTLLQYS---DRLYALKQRPYEKPLGIFLPSPTAM--KLV 77 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLST--TDIHPLSTANLKTACFRVP-CGFTKKLIETY 131 S +S LA PGP+TL+ + L + +P + AC RVP C + + Sbjct: 78 SRQTISDELANCLLPGPVTLMFERLPCLPAEFNP---GVVNVAC-RVPDCPIVSTICKKL 133 Query: 132 GHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGG-ISKIGLESTIVNVQCEKKV 189 G PLA SAN SG ++ T++ H + I LI+D G I G STIV++ E Sbjct: 134 GQPLAQTSANVSGSSLNPTSIDHF--RDLHPNIDLILDAGSIISSGEGSTIVDLTVESGF 191 Query: 190 RILRPGGLEIETLKRAISVEL 210 RI+R G E ET+++ S L Sbjct: 192 RIVRSGCAEKETMQKLKSFGL 212 >gi|260495584|ref|ZP_05815709.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33] gi|260196926|gb|EEW94448.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33] Length = 217 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/179 (34%), Positives = 90/179 (50%), Gaps = 9/179 (5%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP--- 78 G I PT+TVYGL N +I +Y K R +PLI +S + V++ A V Sbjct: 28 GSLIIYPTDTVYGLGAVITNEQSINNVYLAKSRSFSSPLIALLSSVDKVEEVAYVSDKNK 87 Query: 79 -LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLA 136 L LAK FWPG LT++L I + + T R+P K+I+ G LA Sbjct: 88 NLLKKLAKAFWPGALTVILK--RKEYIPSIMVSGGDTIGVRIPNLDLAIKIIDLAGGILA 145 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 SAN SG+ + + LS +I ++ ++ID G K+G STI+++ + +ILR G Sbjct: 146 TTSANISGEATPKSYDE-LSEAIKSKVDILIDSGKCKLGEASTIIDLTSDVP-KILRKG 202 >gi|237742936|ref|ZP_04573417.1| SUA5 protein [Fusobacterium sp. 4_1_13] gi|229430584|gb|EEO40796.1| SUA5 protein [Fusobacterium sp. 4_1_13] Length = 217 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/179 (34%), Positives = 90/179 (50%), Gaps = 9/179 (5%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV----D 77 G I PT+TVYGL N +I +Y K R +PLI +S + V++ A V Sbjct: 28 GSLIIYPTDTVYGLGAIVTNEQSINNVYLAKSRSFSSPLIALLSSVDKVEEVAYVPDKNR 87 Query: 78 PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLA 136 L LAK FWPG LT++L I + + T R+P K+I+ G LA Sbjct: 88 ELLKKLAKAFWPGALTVILK--KKKHIPSIMVSGGDTIGVRIPNFDLAIKIIDLAGGILA 145 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 SAN SG+ + + LS +I ++ ++ID G K+G STI+++ + +ILR G Sbjct: 146 TTSANISGEATPKSYDE-LSEAIKSKVDILIDSGECKLGEASTIIDLTSDVP-KILRKG 202 >gi|169600167|ref|XP_001793506.1| hypothetical protein SNOG_02913 [Phaeosphaeria nodorum SN15] gi|160705395|gb|EAT89644.2| hypothetical protein SNOG_02913 [Phaeosphaeria nodorum SN15] Length = 354 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 45/136 (33%), Positives = 70/136 (51%), Gaps = 20/136 (14%) Query: 11 ALRKAC-EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +L+KA E + +P+A PTETVYGL D+ +A++ ++ K RPA NPLI H+ +S Sbjct: 41 SLKKAADELVKTDVPVAFPTETVYGLGADATRSSAVKSIFAAKGRPADNPLIVHIHSLSQ 100 Query: 70 VKK----------------HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK 113 ++ S+ + L + FWPGPLT++L +++ + P TA L Sbjct: 101 LRALLSGQLEEATGGTETGSDSIPTIYKPLIERFWPGPLTIILPTPTSSILAPEVTAGLP 160 Query: 114 TACFR---VPCGFTKK 126 T R V G+ K Sbjct: 161 TFGARWENVTIGYKDK 176 >gi|76787929|ref|YP_329782.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus agalactiae A909] gi|77405491|ref|ZP_00782583.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus agalactiae H36B] gi|77408673|ref|ZP_00785406.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus agalactiae COH1] gi|76562986|gb|ABA45570.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus agalactiae A909] gi|77172721|gb|EAO75857.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus agalactiae COH1] gi|77175888|gb|EAO78665.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus agalactiae H36B] Length = 198 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/190 (32%), Positives = 100/190 (52%), Gaps = 20/190 (10%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDISMVKKHASVDPLSL 81 + +PTETVYG+ + + A+ +YE+KKRP AMN IC D + K++ P L Sbjct: 14 VIMPTETVYGIFAKALSEEAVNHVYELKKRPRDKAMNLNIC---DFETILKYSKNQPTYL 70 Query: 82 -HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPS 139 L F PGPLT++L+ ++ ++ + L + FR+P T +I +G PL PS Sbjct: 71 KQLYDAFLPGPLTIILE--ASQEVPDWINSGLSSVGFRMPKHPVTLDMIANHG-PLIGPS 127 Query: 140 ANRSGQIS---ITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 AN SG S + ++ + + L I+ + G++STI+++ + +V+ILR G Sbjct: 128 ANISGCDSGRVFSEIQKQFNHQV-----LGIEDDKALTGVDSTIIDLSGD-RVKILRQGA 181 Query: 197 LEIETLKRAI 206 + E L I Sbjct: 182 ITQEVLTATI 191 >gi|289581382|ref|YP_003479848.1| Sua5/YciO/YrdC/YwlC family protein [Natrialba magadii ATCC 43099] gi|289530935|gb|ADD05286.1| Sua5/YciO/YrdC/YwlC family protein [Natrialba magadii ATCC 43099] Length = 196 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 60/193 (31%), Positives = 91/193 (47%), Gaps = 10/193 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +A + + G + PTETVYGL D+ +P A+ R++E+K R P+ V + Sbjct: 6 LDRAADAICDGDLVVYPTETVYGLGADALDPDAVERVFEVKGRDRSKPISLAVPSVPAAF 65 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-KLIET 130 + F PGP+T++ L ++ + TA RVP T L E Sbjct: 66 DYVRTTERERRFMATFLPGPVTVLCQRLE--NVPDVLTAGEDRVGIRVPDQPTALALCER 123 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G P+ SAN SG S+ ++ L + + + ++DGG + G EST+V+ E Sbjct: 124 AGTPITATSANVSGAGSVRRLEE-LDDGLRESVAAVLDGGETP-GTESTVVDPSSET--- 178 Query: 191 ILRPGGL--EIET 201 I R G L EIET Sbjct: 179 IHRRGALADEIET 191 >gi|302334926|ref|YP_003800133.1| protein-(glutamine-N5) methyltransferase, release factor-specific [Olsenella uli DSM 7084] gi|301318766|gb|ADK67253.1| protein-(glutamine-N5) methyltransferase, release factor-specific [Olsenella uli DSM 7084] Length = 524 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 62/189 (32%), Positives = 93/189 (49%), Gaps = 19/189 (10%) Query: 18 FLDAGLPIAIPTETVYGL--AVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75 LD G+ I +PT++VYG+ A NP R ++IK+R L ++D+ +++ Sbjct: 331 LLDGGV-IVVPTDSVYGIGCAATPGNPGHA-RTFQIKRRALSQTLPWLIADVQDLERFGH 388 Query: 76 VDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK-----TACFRVP-CGFTKKLI 128 P + LA+ FWPG LTLV+ PL A + T R+P +++ Sbjct: 389 RVPKWAYALAREFWPGALTLVV------RASPLVPAEYRRSDDGTIALRLPDSNLVREIA 442 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 G PLAI SAN G S T+ + I I E+ L++DGG S + STIV+ Sbjct: 443 REVGAPLAITSANTHGASSATSGEGI-EGRIAGEVDLVLDGGPSPLAAASTIVDCTGADP 501 Query: 189 VRILRPGGL 197 R+LR G + Sbjct: 502 -RVLREGAI 509 >gi|322418699|ref|YP_004197922.1| Sua5/YciO/YrdC/YwlC family protein [Geobacter sp. M18] gi|320125086|gb|ADW12646.1| Sua5/YciO/YrdC/YwlC family protein [Geobacter sp. M18] Length = 202 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/161 (31%), Positives = 78/161 (48%), Gaps = 10/161 (6%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 K E L G +A PT+T YG+ + I R+Y+IK+R P SD+S + ++ Sbjct: 17 KVVEILKNGGVVAYPTDTTYGIGCSIFSKKGIERIYQIKQRDRKKPFSFICSDMSEISRY 76 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132 A V + + PGP T VL+ S + L T +T RVP +++ G Sbjct: 77 ARVSNYAFKQLRRLLPGPYTFVLEANSV--VPDLVTTKQRTVGIRVPDNKICLAIVKELG 134 Query: 133 HPLAIPSANRSGQISITN---VKHILSSSICKEIPLIIDGG 170 P+ SAN SG+ I N V+H L +++ L++DGG Sbjct: 135 APIVTTSANLSGEDPIGNPWAVEHELG----RQLDLVVDGG 171 >gi|320532875|ref|ZP_08033646.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320134905|gb|EFW27082.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 256 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 69/232 (29%), Positives = 106/232 (45%), Gaps = 26/232 (11%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + L+ ACE L AG + +PT+TVYG+ ++ + A+ RL K R P V+D + Sbjct: 20 DPLQPACEHLRAGGLVILPTDTVYGIGCNAADAGAVERLLAAKGRGRQMPPPVLVADPAD 79 Query: 70 VKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 + + P + H L + FWPG LTLVLD T T T R+P G L Sbjct: 80 LTGIVAQVPEAAHTLMEAFWPGALTLVLDADETLTWDLGETGG--TLAVRMPAHGLALNL 137 Query: 128 IETYGHPLAIPSANRSGQIS--------------ITNVKHILSSS-----ICKEIPLIID 168 + G PLA+ SAN +G + +++ + + + +E L++D Sbjct: 138 LRRSG-PLAVTSANPTGAPPATDAASARAAFPGRVRDIEELTPGTGDVGAVGREDILLLD 196 Query: 169 GGISKIGLESTIVNVQC--EKKVRILRPGGLEIETLKRAISVELEYCVDETS 218 GG + + STIV + + RILR G L L+R + V L E + Sbjct: 197 GGATPGPVPSTIVTLAGAHARAPRILRQGVLARGDLERVVGVALSERTAEAA 248 >gi|38233637|ref|NP_939404.1| hypothetical protein DIP1043 [Corynebacterium diphtheriae NCTC 13129] gi|38199897|emb|CAE49563.1| Conserved hypothetical protein [Corynebacterium diphtheriae] Length = 216 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 60/208 (28%), Positives = 103/208 (49%), Gaps = 9/208 (4%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR-PAMN-PLICHV 64 T L++A + G + IPT+T+YG+ D+ + TA+ +L E K R P M P++ Sbjct: 12 TREAGLQQAISTVKDGRLVVIPTDTLYGIGCDAFDNTAVAKLLETKHRGPDMPVPVLVGS 71 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 D + H+ D L L + FWPG L++V++ + + T T R+P Sbjct: 72 WDTARGLVHSYSDQLRT-LIEAFWPGGLSIVVEQAPSLQWNLGDTRG--TVMLRMPLHPV 128 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 +L+ G P+A+ SAN SGQ T + + + + +D G + +G STI+++ Sbjct: 129 AIELLRETG-PMAVSSANISGQTPATTAQEA-QRQLGDNVSVYLDAGETPVGTASTIIDL 186 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELE 211 + RILR G + E + + V++E Sbjct: 187 SGDHP-RILREGAISAERVAEVLEVDVE 213 >gi|256825640|ref|YP_003149600.1| Sua5/YciO/YrdC/YwlC family protein [Kytococcus sedentarius DSM 20547] gi|256689033|gb|ACV06835.1| Sua5/YciO/YrdC/YwlC family protein [Kytococcus sedentarius DSM 20547] Length = 440 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 64/203 (31%), Positives = 95/203 (46%), Gaps = 5/203 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 A A E L G I +PT+TVYG+A D +P + + K+R A P V + Sbjct: 16 DEAFGAATEALGEGRVIVMPTDTVYGVAADPFHPDGVPNVLAAKQRSAAMPPPVLVPSVR 75 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 V A S+ P L + WPGPLT+V+ + L N T R+P Sbjct: 76 TVDGLATSLQPYVKTLIRELWPGPLTVVVQAQPSLQWD-LGETN-GTVALRMPDHDLALR 133 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + T PLA+ SAN +GQ + T+V ++ + + + +DGG + STIV+ Sbjct: 134 LLTRTGPLAVTSANVTGQPAATSVLEA-ATQLGSAVEVYLDGGPTAGNRPSTIVDCTRPS 192 Query: 188 KVRILRPGGLEIETLKRAISVEL 210 V ILR G L +E L+ I ++ Sbjct: 193 PV-ILRLGALSVERLEEVIGPDV 214 >gi|257785106|ref|YP_003180323.1| Sua5/YciO/YrdC/YwlC family protein [Atopobium parvulum DSM 20469] gi|257473613|gb|ACV51732.1| Sua5/YciO/YrdC/YwlC family protein [Atopobium parvulum DSM 20469] Length = 216 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/199 (30%), Positives = 102/199 (51%), Gaps = 8/199 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGL--AVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 D++ + A E G + +PT++VYG+ A +NP +R++EIK+RP L V Sbjct: 13 DASVVSLAVEVARRGGVLIMPTDSVYGIGAAATPQNP-GHKRIFEIKQRPVEQTLPWLVG 71 Query: 66 DISMVKKHASVD-PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 S ++K+A + + L + +WPG LTLV++ + N +T R+P Sbjct: 72 SKSDLQKYAHITHDWANKLVEAYWPGALTLVVNASENVPEEYVLPDN-RTIALRMPNSPL 130 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 ++ + G PLA SAN G S + L + + +E L++DGG + + + STIV+ Sbjct: 131 VCRIAQQLGCPLATTSANTHGTPSAVD-GCGLEAELVEEADLVLDGGPAPLAIASTIVDC 189 Query: 184 QCEKKVRILRPGGLEIETL 202 ++RILR G L E + Sbjct: 190 TG-NELRILREGALPTEDI 207 >gi|251782313|ref|YP_002996615.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390942|dbj|BAH81401.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 208 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 60/196 (30%), Positives = 98/196 (50%), Gaps = 8/196 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S+ + + +++G + +PTETVYGL + + A+ +Y++K+RP + +V+D Sbjct: 10 SSIMERLASIIESGGALVLPTETVYGLFAKALDEKAVNAVYDLKQRPRDKAMNLNVADFD 69 Query: 69 MVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + + P L L + F PGPLT++L + + + L T FR+P T Sbjct: 70 SILAFSKEQPTYLEKLYQAFLPGPLTVILK--ANDHVPHWINSGLATVGFRLPSHPITAA 127 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LI+ G PL PSAN SG+ S I+ + I D ++ G +STI+++ E Sbjct: 128 LIQKTG-PLIGPSANLSGKPSGKVFDQIIQDFDFQVIGYADDPFLT--GKDSTILDLSGE 184 Query: 187 KKVRILRPGGLEIETL 202 V ILR G + E L Sbjct: 185 SPV-ILRQGAITKEEL 199 >gi|62185126|ref|YP_219911.1| hypothetical protein CAB498 [Chlamydophila abortus S26/3] gi|62148193|emb|CAH63950.1| hypothetical protein CAB498 [Chlamydophila abortus S26/3] Length = 295 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 66/219 (30%), Positives = 107/219 (48%), Gaps = 23/219 (10%) Query: 3 IMSITDSNA-LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 MS TD + L++A ++LD G +A PT+TVYGL V P A ++Y +K R L+ Sbjct: 7 FMSDTDPDVFLQQAADYLDQGKIVAFPTDTVYGLGVALNYPNAEEKIYALKHRDRGKSLV 66 Query: 62 CHVSDISMVKKHA--SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 +V+ I ++K + ++ +L L++ F PGPLTL++D H + + FR+ Sbjct: 67 VYVNTIEDMEKFSGCTLSTRALKLSQKFLPGPLTLLVD-------HKNPRFHQEKLGFRI 119 Query: 120 -PCGFTKKLIETYGHPLAIPSANRSG---QISITNVKHILSSSICKEIPLIIDGGISKIG 175 KLI+ G PL SAN S I+ V S IP G G Sbjct: 120 LSIPIVNKLIDLAG-PLLGTSANISNFPPAITSNEVTEDFSQEDICVIP-----GCCSYG 173 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV 214 LEST+V+ +++ R G + + ++ + ++E C+ Sbjct: 174 LESTVVSAD---PLKVYREGMVPRQVIEDVVGEKVETCL 209 >gi|328777852|ref|XP_001120082.2| PREDICTED: yrdC domain-containing protein, mitochondrial-like [Apis mellifera] Length = 270 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/137 (37%), Positives = 71/137 (51%), Gaps = 2/137 (1%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 +L A L IAIPT+T+YGLA + ++I +LYEIKKR PL V++I+ + Sbjct: 63 SLAVAITLLQQNEIIAIPTDTIYGLAGIVSSTSSIEKLYEIKKRDKDKPLSISVNNINDI 122 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130 KK VD L L L PGP+T+++ T ++P N T R+P I Sbjct: 123 KKWGIVDHLPQDLLSLILPGPITIIVK--RTPALNPALNPNHDTVGIRIPSFKFISYISA 180 Query: 131 YGHPLAIPSANRSGQIS 147 PLA+ SAN S + S Sbjct: 181 ITGPLALTSANLSNEKS 197 >gi|291457346|ref|ZP_06596736.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium breve DSM 20213] gi|291381181|gb|EFE88699.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium breve DSM 20213] Length = 228 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 62/208 (29%), Positives = 98/208 (47%), Gaps = 10/208 (4%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 +TD + + A D GL I IPT+TVYG+A D RN AI R+YE+K+RP L + Sbjct: 15 VTDESLAQAARIIHDGGL-IVIPTDTVYGVACDPRNAAAIARIYELKRRPRYKALQVLLD 73 Query: 66 DISMVKKHASVDPLSLH-LAKLFWPG---PLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120 + + P L+ L+ F PG P+ + + + + T R+P Sbjct: 74 STDQLDELGLELPSPLNRLSAAFLPGAFSPIAVARPDCTLETLADTAEGRPGTQGIRIPN 133 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 +++ G PLA SANRSG S V + + +I L +DGG ++ + ST+ Sbjct: 134 SALCLEILRATG-PLAASSANRSGDESAQTVDEAV-EAFGNQIDLYLDGGPTQGHISSTV 191 Query: 181 VNVQ--CEKKVRILRPGGLEIETLKRAI 206 V + ILR G + +++A+ Sbjct: 192 VKADPYARDGIEILREGVIPQSMIRKAL 219 >gi|20094073|ref|NP_613920.1| translation factor (SUA5) [Methanopyrus kandleri AV19] gi|19887062|gb|AAM01850.1| Translation factor (SUA5) [Methanopyrus kandleri AV19] Length = 212 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 61/214 (28%), Positives = 105/214 (49%), Gaps = 12/214 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 + ++ D +A++ L AG +AIP +TVY L+ D+ N A+RRLY K+RP P+ Sbjct: 2 VTVLEEEDPHAVKHVVRALRAGKLVAIPCDTVYSLSCDATNSEAVRRLYAAKERPKDKPV 61 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKL--FWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 V S K ++P+ A L PGP+T+V + P A +T R Sbjct: 62 SVAVH--SPEKALELLEPVPRLEAALETLTPGPVTIVAPRRPGV-VAPEVAAGRRTLGVR 118 Query: 119 VPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 +P F +++ +G P+ SAN SG+ + T+ + + + ++++G + G Sbjct: 119 IPDHPFFLRVVRRFGKPIVTTSANVSGRPAPTDPDEVF-EQLGDRLDILVEGE-CRFGEP 176 Query: 178 STIVNVQCEKKVRILRPGGLE----IETLKRAIS 207 ST++ + E + ILR G + +ETL+ S Sbjct: 177 STVIELTPEGNIDILREGAMPKEEILETLRGTTS 210 >gi|317485885|ref|ZP_07944745.1| Sua5/YciO/YrdC/YwlC family protein [Bilophila wadsworthia 3_1_6] gi|316922859|gb|EFV44085.1| Sua5/YciO/YrdC/YwlC family protein [Bilophila wadsworthia 3_1_6] Length = 217 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/187 (27%), Positives = 85/187 (45%), Gaps = 3/187 (1%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 ++A E + G P+ PTET + L + + A R+Y K R + PL + D + Sbjct: 17 FKRAVELMLDGHPVIFPTETFFALGSRALDADATARVYRAKHRSTVRPLPLILGDWEQLD 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDL-LSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130 A V + L K FWPGPL+++ L DI T + P + L + Sbjct: 77 MIAKVHDELMPLLKRFWPGPLSVIFPARLRVPDILTGGTGRVAVRLSSHPV--ARALAQA 134 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G P+ SAN SG ++ +V + I + ++ + + GL ST+V + ++R Sbjct: 135 VGEPITSSSANISGNPAVVSVNQLDEELIASVMGILDEPPVPAGGLPSTLVERMEDGRLR 194 Query: 191 ILRPGGL 197 +LR G + Sbjct: 195 LLRAGAV 201 >gi|261403807|ref|YP_003248031.1| Sua5/YciO/YrdC/YwlC family protein [Methanocaldococcus vulcanius M7] gi|261370800|gb|ACX73549.1| Sua5/YciO/YrdC/YwlC family protein [Methanocaldococcus vulcanius M7] Length = 211 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 62/192 (32%), Positives = 103/192 (53%), Gaps = 19/192 (9%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 N L+K E LD + I T+T+YG++ ++ N A++++Y+IKKR PL + DI+ Sbjct: 21 NFLKK--EILDGKIIIC-GTDTLYGISANALNENAVKKIYQIKKRDYNKPLSICLKDINE 77 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF---RVPCGFTKK 126 +KK+A V+ L+ + K F PGP+T++L S + NL + + R+P ++ Sbjct: 78 IKKYAYVNELAEKIIKHFLPGPITIILKKKS-------NIPNLVSKEYIGIRIP---DEE 127 Query: 127 LI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +I E PL SAN SG T V+ I I K + +ID G K STI+ ++ Sbjct: 128 IIRELAIVPLTTTSANISGGKDPTCVEEI-DGEIIKNVDYVIDIGKCKYSKPSTIIKIK- 185 Query: 186 EKKVRILRPGGL 197 + + ++R G + Sbjct: 186 DSSITLIREGAV 197 >gi|257466268|ref|ZP_05630579.1| SUA5 protein [Fusobacterium gonidiaformans ATCC 25563] gi|315917425|ref|ZP_07913665.1| SUA5 protein [Fusobacterium gonidiaformans ATCC 25563] gi|313691300|gb|EFS28135.1| SUA5 protein [Fusobacterium gonidiaformans ATCC 25563] Length = 202 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 60/195 (30%), Positives = 96/195 (49%), Gaps = 8/195 (4%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 E + G I PT+TVYG+ ++ A+ LY+ K R +PLI V + + + A V Sbjct: 10 EQIKKGALIIYPTDTVYGIGASIQSEEALIHLYQAKSRNFSSPLIALVDSVERISEIAYV 69 Query: 77 DPLSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYG 132 + L KL FWPG LT++L +S N T R+P +I G Sbjct: 70 ERKKELLEKLSQKFWPGGLTIILPAKDCVPKIMISGGN--TVGVRIPNHEMALSIIRAAG 127 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192 L SAN SG+ + ++ + LS +I + ++IDGG+ +G STI++ + ++IL Sbjct: 128 GILPTTSANISGEATPSSYQE-LSEAIKRNADIVIDGGVCPVGEASTILDF-TKDSIQIL 185 Query: 193 RPGGLEIETLKRAIS 207 R G + E ++ I Sbjct: 186 RLGAITKEEIEAVIG 200 >gi|257452399|ref|ZP_05617698.1| SUA5 protein [Fusobacterium sp. 3_1_5R] gi|317058942|ref|ZP_07923427.1| SUA5 protein [Fusobacterium sp. 3_1_5R] gi|313684618|gb|EFS21453.1| SUA5 protein [Fusobacterium sp. 3_1_5R] Length = 202 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 60/195 (30%), Positives = 96/195 (49%), Gaps = 8/195 (4%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 E + G I PT+TVYG+ ++ A+ LY+ K R +PLI V + + + A V Sbjct: 10 EQIKKGALIIYPTDTVYGIGASIQSEEALIHLYQAKSRNFSSPLIALVDSVERISEIAYV 69 Query: 77 DPLSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYG 132 + L KL FWPG LT++L +S N T R+P +I G Sbjct: 70 ERKKELLEKLSQKFWPGGLTIILPAKDCVPKIMISGGN--TVGVRIPNHEMALSIIRASG 127 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192 L SAN SG+ + ++ + LS +I + ++IDGG+ +G STI++ + ++IL Sbjct: 128 GILPTTSANISGEATPSSYQE-LSEAIKRNADIVIDGGVCPVGEASTILDF-TKDSIQIL 185 Query: 193 RPGGLEIETLKRAIS 207 R G + E ++ I Sbjct: 186 RLGAITKEEIEAVIG 200 >gi|50759736|ref|XP_417757.1| PREDICTED: similar to MGC97806 protein [Gallus gallus] Length = 255 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 59/197 (29%), Positives = 97/197 (49%), Gaps = 20/197 (10%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 A+ A L G +A+PT+TVYG+A +++ A++ +Y +K R PL + D+ Sbjct: 47 EAVAAAVGALQEGGLVAVPTDTVYGVACLAQDSRAVQSIYSLKGRNGTKPLAICLGDVEH 106 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVPCG-FTKK 126 + ++ V+ + L + PGP+TLVL D++P ++ R+P F ++ Sbjct: 107 IYRYCHVN-VPDELLQDLLPGPVTLVLKRSEELNKDLNPFTS----LVGVRIPNHPFIRE 161 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--------LES 178 L PLA+ SAN S Q S V + ++ L++DGG IG L S Sbjct: 162 LARACPGPLALTSANVSSQASTLTVSEF--QDLWPQLSLVVDGG--PIGDVQSPECRLGS 217 Query: 179 TIVNVQCEKKVRILRPG 195 T+V++ K I+RPG Sbjct: 218 TVVDLSVSGKFTIIRPG 234 >gi|257056937|ref|YP_003134769.1| translation factor SUA5 [Saccharomonospora viridis DSM 43017] gi|256586809|gb|ACU97942.1| translation factor SUA5 [Saccharomonospora viridis DSM 43017] Length = 216 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 57/209 (27%), Positives = 101/209 (48%), Gaps = 17/209 (8%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++ L+ A + +G + +PT+TVYG+ D+ + TA+R L + K R P+ Sbjct: 14 ADGLKAAISAVRSGRLVVLPTDTVYGIGADAFDATAVRALLQAKNRGPDMPVGV------ 67 Query: 69 MVKKHASVDPLSLHLAK-------LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 +V ++VD L L L++ FWPG L++V+ +H T R+P Sbjct: 68 LVGSWSTVDGLVLGLSQEARTLIEAFWPGDLSIVVS--HAPSLHWNLGTTRGTVMLRMPL 125 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 + P+A+ SAN SGQ + ++ + + + + +DGG S + STIV Sbjct: 126 HPVALEVLREVGPMAVSSANVSGQPPASTMQEA-KEQLGESVAVYLDGGPSGDPVPSTIV 184 Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVEL 210 ++ EK +LR G + E + A+ +E+ Sbjct: 185 DLTGEKP-SLLREGAVSAEAVSEALGMEI 212 >gi|322411680|gb|EFY02588.1| Sua5/YciO/YrdC family protein [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 196 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 59/193 (30%), Positives = 96/193 (49%), Gaps = 8/193 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + +++G + +PTETVYGL + + A+ +Y++K+RP + +V+D + Sbjct: 1 MERLASIIESGGALVLPTETVYGLFAKALDEKAVNAVYDLKQRPRDKAMNLNVADFDSIL 60 Query: 72 KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P L L + F PGPLT++L + + + L T FR+P T LI+ Sbjct: 61 AFSKEQPTYLEKLYQAFLPGPLTVILK--ANDRVPHWINSGLATVGFRLPSHPITAALIQ 118 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL PSAN SG+ S I+ + I D ++ G +STI+++ E V Sbjct: 119 KTG-PLIGPSANLSGKPSGKVFNQIIQDFDFQVIGYADDPFLT--GKDSTILDLSGESPV 175 Query: 190 RILRPGGLEIETL 202 ILR G + E L Sbjct: 176 -ILRQGAITKEEL 187 >gi|323127210|gb|ADX24507.1| Sua5/YciO/YrdC family protein [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 196 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 59/193 (30%), Positives = 96/193 (49%), Gaps = 8/193 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + +++G + +PTETVYGL + + A+ +Y++K+RP + +V+D + Sbjct: 1 MERLASIIESGGALVLPTETVYGLFAKALDEKAVNAVYDLKQRPRDKAMNLNVADFDSIL 60 Query: 72 KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P L L + F PGPLT++L + + + L T FR+P T LI+ Sbjct: 61 AFSKEQPTYLEKLYQAFLPGPLTVILK--ANNHVPHWINSGLATVGFRLPSHPITAALIQ 118 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL PSAN SG+ S I+ + I D ++ G +STI+++ E V Sbjct: 119 KTG-PLIGPSANLSGKPSGKVFDQIIQDFDFQVIGYADDPFLT--GKDSTILDLSGESPV 175 Query: 190 RILRPGGLEIETL 202 ILR G + E L Sbjct: 176 -ILRQGAITKEEL 187 >gi|78357332|ref|YP_388781.1| translation factor SUA5 [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219737|gb|ABB39086.1| translation factor SUA5 [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 210 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 63/210 (30%), Positives = 101/210 (48%), Gaps = 15/210 (7%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL- 60 Q + +TD N +A L G + PTET + + + + A+ +Y IK+RP+ PL Sbjct: 4 QTIPVTDVN---EAAVLLQEGKVVVYPTETFFAVGCLATDVRAVDAVYRIKRRPSGMPLP 60 Query: 61 --ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTAC 116 I + +V +S PL LA+LFWPGPL++ L++ +D P L+ + A Sbjct: 61 VIIGSAGQLGLVTAVSS--PLVTRLAELFWPGPLSV---LVTASDRIPAILTGETGRVAV 115 Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 P L G L SAN SG+ ++T L + ++ ++D + G Sbjct: 116 RVTPHPAAAALCTACGGALVSTSANISGRQAVTAASG-LDPELVGQVAAVVDMPPAPAGG 174 Query: 177 E-STIVNVQCEKKVRILRPGGLEIETLKRA 205 + ST+V V VRI+RPG + + L+ A Sbjct: 175 KPSTLVEVAGPAHVRIVRPGAVTEDALQTA 204 >gi|269219855|ref|ZP_06163709.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 848 str. F0332] gi|269210760|gb|EEZ77100.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 848 str. F0332] Length = 205 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 63/191 (32%), Positives = 90/191 (47%), Gaps = 20/191 (10%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP-LS 80 GL + +PT+TVYGL D R+P A+ RL K R P V+ ++ ++ A P ++ Sbjct: 22 GLLVVLPTDTVYGLGADPRSPRAVDRLLTAKGRGRDKPSPVLVASVAQAEELAREAPDVA 81 Query: 81 LHLAKLFWPGPLTLVL-------DLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGH 133 L FWPG LTLVL DL T L N A +L++ G Sbjct: 82 KALMAEFWPGALTLVLPSERLGWDLGETNGTIALRMPNHPAAL---------ELLKEAG- 131 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 PLA+ SAN SG+ V + + ++ + +DGG G STIV+ +R+LR Sbjct: 132 PLAVSSANLSGRPPAATVGEAV-EQLGGKVAVYLDGGPCPGGAPSTIVSFDG-GLMRVLR 189 Query: 194 PGGLEIETLKR 204 GG+ L R Sbjct: 190 EGGVGRGELAR 200 >gi|94994410|ref|YP_602508.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pyogenes MGAS10750] gi|94547918|gb|ABF37964.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pyogenes MGAS10750] Length = 206 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 94/186 (50%), Gaps = 8/186 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 ++ G + +PTETVYGL + + A+ +Y++K+RP + +V+D + + + P Sbjct: 18 IELGDALVLPTETVYGLFAKALDEKAVNAVYDLKQRPRDKAMNLNVADFNSILAFSKEQP 77 Query: 79 LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136 L L + F PGPLT++L + + + L T FR+P T LI+ G PL Sbjct: 78 RYLKKLYQAFLPGPLTIILK--ANDQVPYWINSGLSTVGFRLPSHPITAALIQKTG-PLI 134 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SG+ S HI+ + D ++ G +STI+++ E V ILR G Sbjct: 135 GPSANLSGKASGRVFDHIMQDFDFQVFGYADDPFLT--GKDSTILDLSGECAV-ILRQGA 191 Query: 197 LEIETL 202 + E L Sbjct: 192 ITKEEL 197 >gi|25011158|ref|NP_735553.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus agalactiae NEM316] gi|76798420|ref|ZP_00780660.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus agalactiae 18RS21] gi|77410541|ref|ZP_00786902.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus agalactiae CJB111] gi|77413279|ref|ZP_00789475.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus agalactiae 515] gi|23095557|emb|CAD46766.1| Unknown [Streptococcus agalactiae NEM316] gi|76586215|gb|EAO62733.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus agalactiae 18RS21] gi|77160666|gb|EAO71781.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus agalactiae 515] gi|77163489|gb|EAO74439.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus agalactiae CJB111] gi|319745081|gb|EFV97407.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus agalactiae ATCC 13813] Length = 198 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 61/190 (32%), Positives = 100/190 (52%), Gaps = 20/190 (10%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDISMVKKHASVDPLSL 81 + +PTETVYG+ + + A+ +YE+KKRP AMN IC D + K++ P L Sbjct: 14 VIMPTETVYGIFAKALSEEAVNHVYELKKRPRDKAMNLNIC---DFETILKYSKNQPTYL 70 Query: 82 -HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPS 139 L F PGPLT++L+ ++ ++ + L + FR+P T +I +G PL PS Sbjct: 71 KQLYDAFLPGPLTIILE--ASQEVPHWINSGLLSVGFRMPKHPVTLDMIANHG-PLIGPS 127 Query: 140 ANRSGQIS---ITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 AN SG S + ++ + + L I+ + G++STI+++ + +V+ILR G Sbjct: 128 ANISGCDSGRVFSEIQKQFNHQV-----LGIEDDKALTGVDSTIIDLSGD-RVKILRQGA 181 Query: 197 LEIETLKRAI 206 + E L I Sbjct: 182 ITQEVLTATI 191 >gi|260804901|ref|XP_002597326.1| hypothetical protein BRAFLDRAFT_203486 [Branchiostoma floridae] gi|229282589|gb|EEN53338.1| hypothetical protein BRAFLDRAFT_203486 [Branchiostoma floridae] Length = 826 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 62/187 (33%), Positives = 97/187 (51%), Gaps = 13/187 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++ LR + LDAG IPT+TVY LA ++P AI+R+Y IK RPA P+ +S + Sbjct: 618 TSGLRTIADLLDAGGVCGIPTDTVYALAASCKHPEAIKRIYHIKSRPAEKPICVCISHLG 677 Query: 69 MVK-KHASVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPLSTANLKTA---CFRVP- 120 ++ PL + +PG ++ V+ D L+ + + + + T+ C RVP Sbjct: 678 QLEAAQPGFSPLLWDFMRRCYPGGISCVVPKGDWLANLGLGD-AVSYIGTSDSICIRVPD 736 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 T L+ G PL I SAN SG+ T+ +LSS K ++ DG +++ + ST+ Sbjct: 737 STATAHLVSMTG-PLGITSANPSGEPDSTHHDMVLSSLGDKIDGMLCDGPSNEL-VASTV 794 Query: 181 VNVQCEK 187 VN C K Sbjct: 795 VN--CMK 799 >gi|320538321|ref|ZP_08038202.1| Sua5/YciO/YrdC/YwlC family protein [Treponema phagedenis F0421] gi|320144820|gb|EFW36555.1| Sua5/YciO/YrdC/YwlC family protein [Treponema phagedenis F0421] Length = 181 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 95/197 (48%), Gaps = 21/197 (10%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 I+S D N+ E L + IPT+T+YG + P ++ IK R A I Sbjct: 2 IVSKIDGNSADITAELLREKKIVIIPTDTIYGFS--GIMPETADKIAAIKGRNASKQFIA 59 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC- 121 ++ KK+ + L+ WPGPLTL++ L N T FR P Sbjct: 60 LIAKPEDYKKYTDISIPQKFLS--LWPGPLTLIMRL-----------KNGNTQAFRCPND 106 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI-GLESTI 180 + ++++E G P+ SANRSG +T+++ I +++ LI+D G KI GL STI Sbjct: 107 NWLREVVEKTGKPIYSTSANRSGFPPLTDIEEI-KQEFQQDVSLIVDAG--KITGLASTI 163 Query: 181 VNVQCEKKVRILRPGGL 197 V++ + ++LR G + Sbjct: 164 VDISGSEP-KLLRQGAI 179 >gi|206889211|ref|YP_002248839.1| Sua5/YciO/YrdC/YwlC family protein [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741149|gb|ACI20206.1| Sua5/YciO/YrdC/YwlC family protein [Thermodesulfovibrio yellowstonii DSM 11347] Length = 199 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 56/179 (31%), Positives = 96/179 (53%), Gaps = 10/179 (5%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN--PLICHVSDISMVKKHASVDPLSLH 82 I PTET+YG+ V + +R+L+EIKKRP PLI ++ + ++ + + ++ Sbjct: 24 IIYPTETLYGIGVKYDSKKLLRKLFEIKKRPEEKSFPLIVNLQHLDLITEF--IPSIAKK 81 Query: 83 LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSAN 141 + +WPGPLTL+L + ++ T + K A R+P F KLI+ P+ SAN Sbjct: 82 FIEKYWPGPLTLLLP--AKKNLPKRITKDNKIAV-RMPGESFALKLIQLSQFPITATSAN 138 Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200 SG + ++ ++ I L+IDGG G+ STIV+ + +++R G +E++ Sbjct: 139 ISGYPAADCIETVMKYFKDSFIDLLIDGG-KLPGIPSTIVDATVDPP-QLIRKGAIEVD 195 >gi|108804486|ref|YP_644423.1| translation factor SUA5 [Rubrobacter xylanophilus DSM 9941] gi|108765729|gb|ABG04611.1| translation factor SUA5 [Rubrobacter xylanophilus DSM 9941] Length = 191 Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 47/121 (38%), Positives = 61/121 (50%), Gaps = 17/121 (14%) Query: 27 IPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP--LICHVSDISMVKKHASVDPLSLHLA 84 +PTETV GL + R+YEIK R P L+C ++ + A V PL+ LA Sbjct: 21 VPTETVVGLVASE---AGLERIYEIKVRERGKPIALLCRSAEEAF-SLAAKVPPLARTLA 76 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSG 144 L+WPGPLTLVLD T RVP G + +++ YG PL SAN SG Sbjct: 77 DLYWPGPLTLVLD-----------RPGGGTIGLRVPRGRVRDVLDAYGGPLYATSANISG 125 Query: 145 Q 145 + Sbjct: 126 E 126 >gi|73976934|ref|XP_539586.2| PREDICTED: similar to ischemia/reperfusion inducible protein [Canis familiaris] Length = 274 Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 60/196 (30%), Positives = 96/196 (48%), Gaps = 16/196 (8%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ALR A L +G + +PT+T+YG A + A+ +Y +K R PL + ++ Sbjct: 60 TEALRAAVSELRSGAVVTVPTDTLYGQACAASCSAALDAVYRLKGRSHAKPLAVCLGRVA 119 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVPC-GFTK 125 V ++ V + L + PGP+TLVL+ D++P + R+P F + Sbjct: 120 DVYRYCRVS-VPEGLLRDLLPGPVTLVLERSQELNRDLNPCT----PLVGVRIPDHAFIQ 174 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG------LEST 179 L + +G PLA+ SAN S Q S V+ + ++ L+IDGG G L ST Sbjct: 175 DLAQVFGEPLALTSANLSSQASSLTVEEF--QDLWPQLSLVIDGGPIGDGQSPEYRLGST 232 Query: 180 IVNVQCEKKVRILRPG 195 +V++ K I+RPG Sbjct: 233 VVDLSVPGKFGIIRPG 248 >gi|170781880|ref|YP_001710212.1| hypothetical protein CMS_1485 [Clavibacter michiganensis subsp. sepedonicus] gi|169156448|emb|CAQ01596.1| conserved hypothetical protein [Clavibacter michiganensis subsp. sepedonicus] Length = 320 Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 64/229 (27%), Positives = 107/229 (46%), Gaps = 9/229 (3%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 +R A + + G + IPT+TVYG+A D+ NP A++RL + K R P + S + Sbjct: 20 GMRLARQAVGRGEVVVIPTDTVYGIAADAFNPEAVQRLLDAKGRGRDAPPPVLIPGQSTL 79 Query: 71 KKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129 A P + + FWPG LT++L + + + L T R+P ++ Sbjct: 80 DALADFVPDVVRRMVDEFWPGGLTVIL-VAQPSLVWDLGETR-GTVALRMPANSYALVLL 137 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN----VQC 185 PLA+ SAN++GQ + + + + + + + +D G + G STIV+ Q Sbjct: 138 AETGPLAVSSANKTGQPAAATAQEAV-DQLGESVDIFLD-GGAAGGAASTIVDASRVTQA 195 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRS 234 +VRI+R G + +++ I ELE V P+ + APR Sbjct: 196 GGRVRIVREGAITRAQIQQLIGDELEPVVTAPVEPEQAPVPDEPEAPRG 244 >gi|190570595|ref|YP_001974953.1| Sua5/YciO/YrdC/YwlC family protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019153|ref|ZP_03334960.1| Sua5/YciO/YrdC/YwlC family protein [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190356867|emb|CAQ54241.1| Sua5/YciO/YrdC/YwlC family protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995262|gb|EEB55903.1| Sua5/YciO/YrdC/YwlC family protein [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 195 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 56/182 (30%), Positives = 90/182 (49%), Gaps = 7/182 (3%) Query: 28 PTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLF 87 PTETVY LA ++ +I ++Y IKKR PL VSD+ + A V ++L F Sbjct: 18 PTETVYALACNALGKESIEKIYRIKKRSQNKPLSIFVSDVDSLTNIAKVKEEYINLINYF 77 Query: 88 WPGPLTLVLDLLSTTDIHPLSTANLKTAC-FRVPCG-FTKKLIETYGHPLAIPSANRSGQ 145 PGP+T +L L D L K + R+P ++ P+ S N SG+ Sbjct: 78 SPGPMTYILPL---QDNSILPNEFFKDSIGIRIPDHPIAISILNELKTPVVATSINISGE 134 Query: 146 ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRA 205 SI + I SI + + +I+ G+ESTI+++ + K+++LR G + ++T+ Sbjct: 135 KSICKARDI-PQSIKQHLSAVIEDDELVSGIESTIIDLTGD-KIKVLRKGKISLQTINNE 192 Query: 206 IS 207 S Sbjct: 193 FS 194 >gi|45357749|ref|NP_987306.1| hypothetical protein MMP0186 [Methanococcus maripaludis S2] gi|45047309|emb|CAF29742.1| conserved hypothetical protein [Methanococcus maripaludis S2] Length = 206 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 59/221 (26%), Positives = 109/221 (49%), Gaps = 30/221 (13%) Query: 1 MQIMSITDSN------ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR 54 M+ I++SN + A + + G I T+T+YGL+ ++ + AI ++Y IK+R Sbjct: 1 MKTFEISESNLKNCEKEIETAKKMILGGKIILCGTDTLYGLSTNALDKNAIEKIYSIKER 60 Query: 55 PAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVL-------DLLSTTDIHPL 107 P+ + + ++ + VD + + + F PGP+T++L D+L D+ Sbjct: 61 DPNKPISISLGEKKQIENYVYVDETAKKIIEKFMPGPITVILKKKDIIPDILGKDDVG-- 118 Query: 108 STANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKE-IPLI 166 R+P + I PL SAN SG+ + T+++ + I KE + LI Sbjct: 119 ---------VRIPDNDVIRKIAVV--PLTTTSANISGKTAPTSLEEV--DQIIKEKVDLI 165 Query: 167 IDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS 207 +D G K ++STIV V + K+ ++R G + E + +A++ Sbjct: 166 VDTGPCKYKVQSTIVKV-IDGKIELIREGKIPFEEILKAVN 205 >gi|329929001|ref|ZP_08282803.1| SUA5 domain protein [Paenibacillus sp. HGF5] gi|328936990|gb|EGG33419.1| SUA5 domain protein [Paenibacillus sp. HGF5] Length = 221 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 56/181 (30%), Positives = 89/181 (49%), Gaps = 23/181 (12%) Query: 163 IPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKR-AISVELEYCVD------ 215 I ++DGG + +G+EST+V V + V +LRPGG+ E L A SV + + Sbjct: 30 IDGVLDGGPAGVGVESTVVQVGEDGAVTVLRPGGVTAEQLAAVAASVRQDPALQRAAGEA 89 Query: 216 ETSTPQSPGMLKSHYAPRSQVRL----RAIHVNPREALIRFGNVPIKNIEN--------- 262 E+ P+SPGM +HYAP+ + + RA V+ R A + Sbjct: 90 ESPAPRSPGMKYTHYAPKGAMCVVQGPRADTVSARIAAELEAAARRGEVTGVLSFDEHIG 149 Query: 263 ---AIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 A ++++L +EAA L+ ++ D+ GA+ I + P+ GLG A+ NRL +AA Sbjct: 150 HYAADVAVSLGSLAAPEEAARRLYAGLRRFDEEGATFILAEACPDQGLGAAVMNRLLKAA 209 Query: 320 A 320 Sbjct: 210 G 210 >gi|325002822|ref|ZP_08123934.1| translation factor SUA5 [Pseudonocardia sp. P1] Length = 220 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 59/203 (29%), Positives = 100/203 (49%), Gaps = 7/203 (3%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 L A + +G + +PT+TVYG+ D+ + TA+R L K+R P+ V + + Sbjct: 21 GLTAAARAVRSGELVVLPTDTVYGIGCDAFSGTAVRNLLSAKRRGPDMPVGVLVGSWTTI 80 Query: 71 KKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLI 128 SV P + L + FWPG ++LVL+ + ST T R+P +L+ Sbjct: 81 DGLVTSVPPSARALIEAFWPGEVSLVLEHAPSLAWDLGSTRG--TVMLRMPLHPVALELL 138 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 G P+A+ SAN SG + V + + + + + +DGG S + STIV++ + Sbjct: 139 REVG-PMAVSSANTSGNPPASTVTEAI-TQLASSVQVYLDGGPSGDPVASTIVDLTGVRP 196 Query: 189 VRILRPGGLEIETLKRAISVELE 211 R+LR GG+ E + + E++ Sbjct: 197 -RLLREGGVSAEQVAEVVGQEVD 218 >gi|300933614|ref|ZP_07148870.1| hypothetical protein CresD4_06047 [Corynebacterium resistens DSM 45100] Length = 219 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 60/214 (28%), Positives = 104/214 (48%), Gaps = 13/214 (6%) Query: 2 QIMSITDSNALRKACEF----LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 Q + TD N +A E +D G + +PT+TVYG+ D+ + A+ L K R Sbjct: 3 QRVDATDPNDRERAIEIAASAVDGGRLVVLPTDTVYGIGCDAFDNQAVEALLRAKGRGPD 62 Query: 58 NPLICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLK-TA 115 P+ V ++ ++ L + FWPG L++V+ + P + + + T Sbjct: 63 MPVPVLVGSWDTIQGLVRDYTYNMRLLVEAFWPGGLSMVVHQAPSL---PWNLGDTRGTV 119 Query: 116 CFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174 R+P +L+ G P+A+ SAN SGQ TNV+ + + ++ + I+GG + Sbjct: 120 MLRMPEHPIAIELLNQTG-PMAVSSANISGQPPATNVQ-MAEDQLGADVAVYINGGNATH 177 Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAISV 208 G+ STIV++ + RILR G + E + R + + Sbjct: 178 GVASTIVDLSSGRP-RILREGAITAEQIGRVLGM 210 >gi|283783533|ref|YP_003374287.1| Sua5/YciO/YrdC/YwlC family protein [Gardnerella vaginalis 409-05] gi|283442164|gb|ADB14630.1| Sua5/YciO/YrdC/YwlC family protein [Gardnerella vaginalis 409-05] Length = 228 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 108/229 (47%), Gaps = 24/229 (10%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M + + +L+ A + ++ G I +PT+TVYG+A D N A+ ++YE+K+RP L Sbjct: 1 MSKICTINEESLQMAAQIINEGGVIVVPTDTVYGVACDPFNEAAVAKIYELKRRPRTKAL 60 Query: 61 ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLT--------LVLDLLST------TDIH 105 +S + ++K P L L K F PG + V L+T TD Sbjct: 61 QILMSGVEDLEKLGLYLPSPLDILGKKFLPGGYSPIARAKKDSVASKLATLCKTNETDEK 120 Query: 106 PLSTANLK----TACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSIC 160 T + T RVP C +++ G PLA SANRSG S +V+ ++ Sbjct: 121 TQETETTQAIESTQGVRVPDCPELMQILRVTG-PLAASSANRSGNESADSVEEAF-AAFG 178 Query: 161 KEIPLIIDGGISKIGLESTIVNVQCEKK--VRILRPGGLEIETLKRAIS 207 EIPL ++ G ++ + ST+V K + ILR G + ++ A+S Sbjct: 179 NEIPLYLNAGPTRSHVASTVVGADSNDKDGIVILREGVISECEIRNALS 227 >gi|22537233|ref|NP_688084.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus agalactiae 2603V/R] gi|22534100|gb|AAM99956.1|AE014241_7 Sua5/YciO/YrdC/YwlC family protein [Streptococcus agalactiae 2603V/R] Length = 183 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 61/188 (32%), Positives = 99/188 (52%), Gaps = 20/188 (10%) Query: 27 IPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDISMVKKHASVDPLSL-H 82 +PTETVYG+ + + A+ +YE+KKRP AMN IC D + K++ P L Sbjct: 1 MPTETVYGIFAKALSEEAVNHVYELKKRPRDKAMNLNIC---DFETILKYSKNQPTYLKQ 57 Query: 83 LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSAN 141 L F PGPLT++L+ ++ ++ + L + FR+P T +I +G PL PSAN Sbjct: 58 LYDAFLPGPLTIILE--ASQEVPHWINSGLLSVGFRMPKHPVTLDMIANHG-PLIGPSAN 114 Query: 142 RSGQIS---ITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLE 198 SG S + ++ + + L I+ + G++STI+++ + +V+ILR G + Sbjct: 115 ISGCDSGRVFSEIQKQFNHQV-----LGIEDDKALTGVDSTIIDLSGD-RVKILRQGAIT 168 Query: 199 IETLKRAI 206 E L I Sbjct: 169 QEVLTATI 176 >gi|73666905|ref|YP_302921.1| translation factor SUA5 [Ehrlichia canis str. Jake] gi|72394046|gb|AAZ68323.1| translation factor SUA5 [Ehrlichia canis str. Jake] Length = 198 Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 58/185 (31%), Positives = 97/185 (52%), Gaps = 7/185 (3%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 KA + L+ IA PTETVY LA D+ + AI+++Y+IK R PL V +I+ +K+ Sbjct: 4 KAIQALNNKHLIAFPTETVYALAGDAYSIEAIQKIYQIKGRSYNKPLSLLVGNINKIKQF 63 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132 +++ ++ + + PGP+T VL + + + P N T R+P +++ Sbjct: 64 SNLTDHAIKIIQKLSPGPITFVLPIHNYHKL-PRQFFN-NTIGIRIPNHPIALEIVNKIE 121 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192 +P+ S N SGQ S+T H + +I K I + I+ G EST++++ K IL Sbjct: 122 NPVVGTSINISGQPSVT-AAHQIHETIKKHISVTIEDDSLVNGTESTVIDLTSYK---IL 177 Query: 193 RPGGL 197 R G + Sbjct: 178 RAGAV 182 >gi|54310611|ref|YP_131631.1| putative Sua5/YciO/YrdC family protein [Photobacterium profundum SS9] gi|46915054|emb|CAG21829.1| Putative Sua5/YciO/YrdC family protein [Photobacterium profundum SS9] Length = 192 Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 47/141 (33%), Positives = 71/141 (50%), Gaps = 6/141 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + L++ L +G IA PTE V+G+ D NP A+ +L +K+RP LI ++ Sbjct: 7 DMDNLQQVVSALQSGEVIAYPTEGVFGVGCDPDNPQAVEKLLALKQRPIEKGLILIAANY 66 Query: 68 SMVKKHASVDPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 ++ + LS L K+F WPGP+T V+ + DI PL T + RV Sbjct: 67 QQLQPYIDDAQLSDLQKQKIFSTWPGPVTWVMPV--KKDISPLLTGKFTSIAVRVSDHPL 124 Query: 124 TKKLIETYGHPLAIPSANRSG 144 +KL +G P+ SAN +G Sbjct: 125 VQKLCHQFGKPITSTSANLTG 145 >gi|115380236|ref|ZP_01467257.1| Sua5/YciO/YrdC/YwlC family protein [Stigmatella aurantiaca DW4/3-1] gi|310821629|ref|YP_003953987.1| sua5/ycio/yrdc/ywlc family protein [Stigmatella aurantiaca DW4/3-1] gi|115362760|gb|EAU61974.1| Sua5/YciO/YrdC/YwlC family protein [Stigmatella aurantiaca DW4/3-1] gi|309394701|gb|ADO72160.1| Sua5/YciO/YrdC/YwlC family protein [Stigmatella aurantiaca DW4/3-1] Length = 203 Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 90/188 (47%), Gaps = 6/188 (3%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 +A E L G +A PT+T YGL D + AI RLY++K R PL D+S V K+ Sbjct: 20 RAVEVLSRGGLVAYPTDTYYGLGCDLASKKAIERLYQLKGRDKKKPLSFLCPDLSDVAKY 79 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132 A V + K PG T +L+ +T + + + K RVP + L G Sbjct: 80 AHVSNFAYRTMKGLTPGAFTFILE--ATRIVPDMMMSRQKQVGIRVPDAPLARALAAGLG 137 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192 PL SA+ + + + I + + LI+DGG++ I ST+V++ + + IL Sbjct: 138 RPLVTTSASDEEGEPLIDARDI-KERLGHGLDLILDGGVTLIE-PSTVVSLIGD-SIEIL 194 Query: 193 RPGGLEIE 200 R G +++ Sbjct: 195 RQGKGQLD 202 >gi|297243818|ref|ZP_06927748.1| Sua5/YciO/YrdC family translation factor [Gardnerella vaginalis AMD] gi|296888239|gb|EFH26981.1| Sua5/YciO/YrdC family translation factor [Gardnerella vaginalis AMD] Length = 228 Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 67/222 (30%), Positives = 105/222 (47%), Gaps = 24/222 (10%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 + +L+ A + ++ G I +PT+TVYG+A D N A+ ++YE+K+RP L +S + Sbjct: 8 NEESLQMAAQIINEGGVIVVPTDTVYGVACDPFNEAAVAKIYELKRRPRTKALQILMSGV 67 Query: 68 SMVKKHASVDPLSLH-LAKLFWPGPLT--------LVLDLLST------TDIHPLSTANL 112 ++K P L L K F PG + V L+T TD T Sbjct: 68 EDLEKLGLYLPSPLDILGKKFLPGGYSPIARAKKDSVASKLATLCKTNETDEKTQETETT 127 Query: 113 K----TACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 + T RVP C +++ G PLA SANRSG S +V+ + EIPL + Sbjct: 128 QAIESTQGVRVPDCPELMQILRVTG-PLAASSANRSGNESADSVEEAF-EAFGNEIPLYL 185 Query: 168 DGGISKIGLESTIVNVQCEKK--VRILRPGGLEIETLKRAIS 207 + G ++ + ST+V K + ILR G + ++ A+S Sbjct: 186 NAGPTRSHVASTVVGADSSDKDGIVILREGVISECEIRNALS 227 >gi|81300673|ref|YP_400881.1| hypothetical protein Synpcc7942_1864 [Synechococcus elongatus PCC 7942] gi|81169554|gb|ABB57894.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942] Length = 195 Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 59/189 (31%), Positives = 93/189 (49%), Gaps = 25/189 (13%) Query: 21 AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80 AG I+ PT+T+ LAV P ++Y +K+RP+ PLI + + + A P Sbjct: 15 AGQVISFPTDTLPALAV---QPDQAAQIYRLKQRPSEKPLILMAATAAELWPFAQGSPED 71 Query: 81 LH----LAKLFWPGPLTLVL---DLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYG 132 +A +WPG LTLVL D L ++PL +++ R+P C ++++ G Sbjct: 72 QAQWNAIANQYWPGALTLVLPASDRLPAA-VNPLDRSSIG---LRIPACALARQILAETG 127 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIP----LIIDGGISKIGLESTIVNVQCEKK 188 PLA SANRSG+ ++ + +I E P L D GL ST+V Q + + Sbjct: 128 -PLATTSANRSGEPALLD-----PDAIAAEFPEVTVLAEDPWPDPSGLASTVVRWQADGQ 181 Query: 189 VRILRPGGL 197 ++LR G + Sbjct: 182 WQVLRQGSI 190 >gi|295394651|ref|ZP_06804870.1| Sua5/YciO/YrdC/YwlC family protein [Brevibacterium mcbrellneri ATCC 49030] gi|294972544|gb|EFG48400.1| Sua5/YciO/YrdC/YwlC family protein [Brevibacterium mcbrellneri ATCC 49030] Length = 220 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 55/185 (29%), Positives = 92/185 (49%), Gaps = 7/185 (3%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRP-AMNPLICHVSDISMVKKHASVDPLSLHL 83 + IPT+TVYG+A D+ +P + +L + K R M P + +++ +VD + L Sbjct: 32 LVIPTDTVYGIAADAFSPQGVAKLLQAKGRGRDMPPPVLVPRAETVMGLAEAVDSSVMEL 91 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANR 142 FWPGPLT++ + + +H T R+P T L+ G PLA+ SAN Sbjct: 92 TARFWPGPLTIICN--AQPSLHWDLGDTHGTVGLRMPDHEDTLALLSKVG-PLAVSSANL 148 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202 SG+ + NV+ S + + + +DGG + G STI+++ R+LR G + + L Sbjct: 149 SGEPAAVNVEQA-QSMLGDRVDIFLDGGEAPGGQSSTIIDMSGSVP-RMLREGPISFDEL 206 Query: 203 KRAIS 207 + Sbjct: 207 AEVVD 211 >gi|116753773|ref|YP_842891.1| Sua5/YciO/YrdC/YwlC family protein [Methanosaeta thermophila PT] gi|116665224|gb|ABK14251.1| translation factor SUA5 [Methanosaeta thermophila PT] Length = 198 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 65/205 (31%), Positives = 99/205 (48%), Gaps = 15/205 (7%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M ++ TD A C L G+ + PTETVYG+ ++ + ++I R+Y IK+RP P+ Sbjct: 3 MAVVGGTDEAA---RC-ILSGGI-VVYPTETVYGIGANALDESSIVRVYAIKRRPLDKPI 57 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRV 119 VS M+ A V P L + + PGP+T L+ I P + TA R Sbjct: 58 SIAVSSFEMLCDVAHVRPEDLDMMRKLLPGPVTF---LVRKRSIVPDMLTAGSPLVGVRY 114 Query: 120 PC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P +LIE G P+ SAN +G ++ K I I + ++IDGG + + S Sbjct: 115 PDHEMALRLIEMTG-PITSTSANITGAPPPSDPKEI-DPEILSRVDMLIDGGRCRYAVPS 172 Query: 179 TIVNVQCEKKVRILRPGGLEIETLK 203 T+V++ RILR G + L+ Sbjct: 173 TLVDLSTR---RILRMGAMADRVLE 194 >gi|262198093|ref|YP_003269302.1| Sua5/YciO/YrdC/YwlC family protein [Haliangium ochraceum DSM 14365] gi|262081440|gb|ACY17409.1| Sua5/YciO/YrdC/YwlC family protein [Haliangium ochraceum DSM 14365] Length = 205 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 58/204 (28%), Positives = 101/204 (49%), Gaps = 16/204 (7%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 MS ++ + + +A + L G + +PTET YGLAVD NP A+R L ++K+RPA P Sbjct: 1 MSASERD-VDRAVDILRTGGIVCMPTETTYGLAVDIDNPAALRALAQLKQRPADAPFGLV 59 Query: 64 VSDISMVKKHASV-DPLSLHLAKLFWPGPLTLVLDL---LSTTDIHPLSTANLKTACFRV 119 + + + + ++ PL+ +A+ WPG LTLV+ L I P ++ + RV Sbjct: 60 LGERGHIHQLTALWPPLAEDMARACWPGALTLVVPARPELPGELIGPGGGVGVRLSSHRV 119 Query: 120 PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 P L G + SAN SG + ++ + + + +DGG + ST Sbjct: 120 PTALAAAL----GRAITATSANPSGAPAACDIAR--ARAYFGDAVHYLDGGPATPA-AST 172 Query: 180 IVNVQ----CEKKVRILRPGGLEI 199 +V ++ + + R+LR G +++ Sbjct: 173 VVAIEDQGDGQARARLLRAGPVDV 196 >gi|15606072|ref|NP_213449.1| hypothetical protein aq_651 [Aquifex aeolicus VF5] gi|2983259|gb|AAC06854.1| hypothetical protein aq_651 [Aquifex aeolicus VF5] Length = 198 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 64/203 (31%), Positives = 105/203 (51%), Gaps = 12/203 (5%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 AL++A E L G I PT+T+YG+ D+ N A++RLY+I +RP+ P + + D S Sbjct: 7 KEALKEAVEILKKGGIIVAPTDTLYGILADATNEEAVKRLYKI-RRPSGKPFLVLLPDES 65 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 ++K +D H KL LTLV T D L + T R+P GF + L Sbjct: 66 WLEK-LCLDVKEEH-KKLLKVEGLTLVFR--KTCD--KLDYVSKGTLAVRLPQKGFIRDL 119 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + P+ PS N G+ +V+ + ++ L ID G+ K G STI+++ + Sbjct: 120 LSELKKPVVAPSVNPEGKKPAESVEEAY-NYFGNKVDLYIDAGVIK-GEPSTILDLT--E 175 Query: 188 KVRILRPGGLEIETLKRAISVEL 210 V+ILR G ++ E +++ ++ +L Sbjct: 176 GVKILREGKVKKEEIEKILNRKL 198 >gi|288818672|ref|YP_003433020.1| translation factor SUA5 protein [Hydrogenobacter thermophilus TK-6] gi|288788072|dbj|BAI69819.1| translation factor SUA5 protein [Hydrogenobacter thermophilus TK-6] gi|308752261|gb|ADO45744.1| Sua5/YciO/YrdC/YwlC family protein [Hydrogenobacter thermophilus TK-6] Length = 203 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 59/210 (28%), Positives = 96/210 (45%), Gaps = 22/210 (10%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+++ AL A + L+ G + PT+T+YGL D+ P A+ RLY I +RP+ P Sbjct: 1 MKVVKAHQKRALPLAAKVLEKGGIVFAPTDTIYGLLADATKPKAVERLYSI-RRPSGRPF 59 Query: 61 ICHVSD------ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT 114 I + D + K D L H+ +F+ +T +H T K+ Sbjct: 60 ILLLPDKYWLEVFDIYAKPTYWDLLDAHITVIFYKR---------TTIPMH--LTRGKKS 108 Query: 115 ACFRVP--CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172 FRVP F + L+ PL PSAN G +VK + ++ L +D G Sbjct: 109 LAFRVPKRGTFIRDLLLYLDAPLVAPSANPEGMEPAKDVKMAM-DYFGDKVDLYVDAGRI 167 Query: 173 KIGLESTIVNVQCEKKVRILRPGGLEIETL 202 + G STIV + + ++R++R G + + + Sbjct: 168 E-GKPSTIVRLIGKNRIRLVREGSVSFKEI 196 >gi|90406707|ref|ZP_01214900.1| Sua5/YciO/YrdC family protein [Psychromonas sp. CNPT3] gi|90312160|gb|EAS40252.1| Sua5/YciO/YrdC family protein [Psychromonas sp. CNPT3] Length = 187 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 93/187 (49%), Gaps = 11/187 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 +L A + L+ IA PTE+V+GL D +P A++++ +IK+RPA LI ++ + Sbjct: 5 SLTNALKVLNNQGVIAYPTESVFGLGCDPDSPDALQKILKIKQRPAHKGLILIAANTKQL 64 Query: 71 KKHASVDPLS-LHLAKL--FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + +A LS +A++ WPGP+T ++ + ++ PL + ++ RV + Sbjct: 65 QDYADFSQLSPAQIARMQATWPGPVTWIVP--AKKNLQPLIKGDFESVAVRVTAHPIVSE 122 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPL---IIDGGISKIGLESTIVNV 183 L + P+ SAN SGQ + N + + + PL I+ +S G S I + Sbjct: 123 LCTLFNKPIISTSANISGQDACQNAAQV--QKMFVDTPLLETIVQASVSAFGSPSQIYDA 180 Query: 184 QCEKKVR 190 K++R Sbjct: 181 LTGKRLR 187 >gi|168009850|ref|XP_001757618.1| predicted protein [Physcomitrella patens subsp. patens] gi|162691312|gb|EDQ77675.1| predicted protein [Physcomitrella patens subsp. patens] Length = 154 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 67/131 (51%), Gaps = 1/131 (0%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 IA+PT+T+YGLA D+ + AIRR+YEIK+R +PL VSD+ +V + L L Sbjct: 20 IAVPTDTLYGLACDASSAEAIRRVYEIKERKLSSPLAVCVSDVDVVAAYGETAQLPAGLL 79 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRS 143 PG +TL+L + + + R+P F + + ++G +A+ SAN S Sbjct: 80 NALLPGAVTLLLPRREPGFLSASLNPGIGSIGIRIPDSDFIRGVARSFGGAVALTSANTS 139 Query: 144 GQISITNVKHI 154 S ++ Sbjct: 140 SHASTVRIEEF 150 >gi|76801361|ref|YP_326369.1| hypothetical protein NP1420A [Natronomonas pharaonis DSM 2160] gi|76557226|emb|CAI48801.1| conserved hypothetical protein [Natronomonas pharaonis DSM 2160] Length = 194 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 52/180 (28%), Positives = 85/180 (47%), Gaps = 7/180 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L A L G + PTETVYGLA D+ +P A++R++E K R P+ + ++ Sbjct: 6 LTDAVAALRRGDLVVYPTETVYGLAADALDPEAVKRVFEAKGRDRDKPVSMALPSVAAAA 65 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCGFTKKLIET 130 ++ + + F PGP+T+ LL D P + A RVP + + Sbjct: 66 EYVTFSDRERAFCEAFLPGPVTV---LLERGDRVPDVLVAGRDRVGLRVPAHDIARDLAR 122 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 P+ SAN SG S + + + +E +++DGG + G EST+V++ + VR Sbjct: 123 RVGPITATSANVSGNPSARRPEAV--DATIRERAVVVDGGETP-GTESTVVDIAADDIVR 179 >gi|301063995|ref|ZP_07204460.1| Sua5/YciO/YrdC/YwlC family protein [delta proteobacterium NaphS2] gi|300441906|gb|EFK06206.1| Sua5/YciO/YrdC/YwlC family protein [delta proteobacterium NaphS2] Length = 215 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 60/186 (32%), Positives = 96/186 (51%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L+ A L +G +A PTE+ YGLA D+ N AIRRL++IK+R P++ + D+ +K Sbjct: 19 LKDAAAILKSGGLVAYPTESYYGLAADAANEAAIRRLFQIKRRKPGEPILLLIPDVGSLK 78 Query: 72 KH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + A V + L FWPG LT+V + + D+ L TA R+ L++ Sbjct: 79 RCVAHVPEAAKRLMDAFWPGGLTIVFE--AQKDLSMLLTAGTSKIGIRLSSHPLATALVK 136 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G P+ SAN SG+ + + +++ K + I+DGG + ST+++V + Sbjct: 137 AMGSPITGTSANVSGEPPCRTPRGVF-NALGKGVDKILDGGETPGEKPSTVLDVT-SYPL 194 Query: 190 RILRPG 195 ILR G Sbjct: 195 TILREG 200 >gi|62751448|ref|NP_001015837.1| yrdC domain containing [Xenopus (Silurana) tropicalis] gi|58476879|gb|AAH90125.1| yrdC domain containing [Xenopus (Silurana) tropicalis] Length = 238 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 55/193 (28%), Positives = 97/193 (50%), Gaps = 16/193 (8%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L + L G IA+PT+T+YG+A ++N +I +Y +K R PL V ++ + Sbjct: 33 LNTSLGILQQGGVIAVPTDTIYGIACLAQNSQSISNIYNVKGRNGTKPLAICVGNVDDIY 92 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVPC-GFTKKLI 128 ++ V + L + PGP+TLV++ +++P ++ R+P F ++L Sbjct: 93 RYCQVR-VPDQLLRDLLPGPVTLVMERSDRLNKELNPFTSL----VGVRIPDHAFIRQLA 147 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG-ISKIG-----LESTIVN 182 E PLA+ SAN S Q S V+ + ++ L++DGG I ++ L ST+V+ Sbjct: 148 EVCSEPLALTSANISSQDSTLTVEEF--RDLWPKLSLVVDGGPIGELSSPECRLGSTVVD 205 Query: 183 VQCEKKVRILRPG 195 + K ++R G Sbjct: 206 LSVPGKFTVIRDG 218 >gi|171779354|ref|ZP_02920318.1| hypothetical protein STRINF_01199 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281971|gb|EDT47402.1| hypothetical protein STRINF_01199 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 199 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 63/191 (32%), Positives = 93/191 (48%), Gaps = 14/191 (7%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 E L G + +PTETVYGL + N A+ +Y +K RP + +V+D + + Sbjct: 6 EILQTGGAVILPTETVYGLFAQAMNEEAVEHVYRLKCRPKDKAMNLNVADYETILAFSKN 65 Query: 77 DPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134 P L L F PGPLT++L + + + L T FR+P T LI+ G P Sbjct: 66 QPTYLKKLYDAFLPGPLTIILQ--ANDRVPAWINSGLSTIGFRIPKHPQTLALIKETG-P 122 Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDG---GISKIGLESTIVNVQCEKKVRI 191 L PSAN SGQ S + + I K+ ++G S G++STI+++ + RI Sbjct: 123 LIGPSANISGQES-----GKVFAQIQKQFDNSVEGFADDSSITGVDSTILDLSGD-FARI 176 Query: 192 LRPGGLEIETL 202 LR G + E L Sbjct: 177 LRQGAITKEDL 187 >gi|86158876|ref|YP_465661.1| translation factor SUA5 [Anaeromyxobacter dehalogenans 2CP-C] gi|85775387|gb|ABC82224.1| translation factor SUA5 [Anaeromyxobacter dehalogenans 2CP-C] Length = 212 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 61/184 (33%), Positives = 91/184 (49%), Gaps = 5/184 (2%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 + PTET YGL + + A+ RL K RP PL +D V + AS++ + LA Sbjct: 22 VVYPTETFYGLGALASDGAALARLAAAKLRPEGKPLPLVAADREQVDRVASLEGAAARLA 81 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRS 143 WPGPLTLVL + + TA T R+P + L G L SAN S Sbjct: 82 GRLWPGPLTLVLP--ARPGLSEAITAGSGTVGVRIPGSEVARALARMAGGALVSTSANLS 139 Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203 G V+ L +++ + ++D G + GL ST+V V E ++R++RPG + IE + Sbjct: 140 GGPPPDRVE-ALDAALRAAVDHVLDAGPTPGGLPSTVVAVAGE-ELRVVRPGAVSIEQVT 197 Query: 204 RAIS 207 A++ Sbjct: 198 AALA 201 >gi|213964492|ref|ZP_03392692.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium amycolatum SK46] gi|213952685|gb|EEB64067.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium amycolatum SK46] Length = 218 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 63/196 (32%), Positives = 92/196 (46%), Gaps = 14/196 (7%) Query: 7 TDSN---ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 TD N A+ A + + AG + +PT+TVYGL D+ + A+ L K R P+ Sbjct: 9 TDENRERAIAAAVDAVKAGRLVVMPTDTVYGLGCDAFDNQAVASLLRAKHRGPDMPVPVL 68 Query: 64 VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 V + ++ P + L + FWPG L+LV++ + + TA T R+P Sbjct: 69 VGSWNTIEGLVREYSPAARTLVEAFWPGGLSLVVNQAPSLPWNLGDTAG--TVMLRMPLH 126 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITN---VKHILSSSICKEIPLIIDGGISKIGLEST 179 I P+A+ SAN SGQ TN K +L E + +DGG + IG ST Sbjct: 127 PIAIEILRRTGPMAVSSANISGQAPATNAVRAKQMLGG----EAAVYVDGGEATIGTPST 182 Query: 180 IVNVQCEKKVRILRPG 195 IV++ RILR G Sbjct: 183 IVDISTPVP-RILREG 197 >gi|197121814|ref|YP_002133765.1| Sua5/YciO/YrdC/YwlC family protein [Anaeromyxobacter sp. K] gi|196171663|gb|ACG72636.1| Sua5/YciO/YrdC/YwlC family protein [Anaeromyxobacter sp. K] Length = 212 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 63/188 (33%), Positives = 92/188 (48%), Gaps = 5/188 (2%) Query: 21 AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80 AG + PTET YGL + + A+ RL K RP PL +D V + AS++ + Sbjct: 18 AGGIVVYPTETFYGLGALASDDAALARLAAAKLRPEGKPLPLVAADREQVDRVASLEGAA 77 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPS 139 LA WPGPLTLVL + + TA T R+P + L G L S Sbjct: 78 ARLAGRLWPGPLTLVLP--ARPGLSEAVTAGSGTVGVRIPGSEVARALARMAGGALVSTS 135 Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEI 199 AN SG V+ L +++ ++ ++D G + GL ST+V V E +R++RPG + I Sbjct: 136 ANLSGGPPPDRVEA-LDAALRAQVDHVLDAGPTPGGLPSTVVAVAGE-ALRVVRPGAVSI 193 Query: 200 ETLKRAIS 207 E + A+ Sbjct: 194 EQVTAALG 201 >gi|282857413|ref|ZP_06266646.1| Sua5/YciO/YrdC/YwlC family protein [Pyramidobacter piscolens W5455] gi|282584698|gb|EFB90033.1| Sua5/YciO/YrdC/YwlC family protein [Pyramidobacter piscolens W5455] Length = 140 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 46/72 (63%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 +A PTETVYGL ++ + A++++Y K RP+ NPLI H V++ A VD + L Sbjct: 33 VAFPTETVYGLGGNALDGEAVKKIYAAKGRPSDNPLILHFPSPEAVERAAFVDDRARRLM 92 Query: 85 KLFWPGPLTLVL 96 FWPGPLTLVL Sbjct: 93 ARFWPGPLTLVL 104 >gi|288559761|ref|YP_003423247.1| Sua5/YciO/YrdC/YwlC family translation factor [Methanobrevibacter ruminantium M1] gi|288542471|gb|ADC46355.1| Sua5/YciO/YrdC/YwlC family translation factor [Methanobrevibacter ruminantium M1] Length = 221 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 60/202 (29%), Positives = 103/202 (50%), Gaps = 10/202 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + + +A + + G I PT+TVYGL + N A++R+Y+IK R PL VSDI Sbjct: 12 DMDLIDEAIDIMAQGGVILYPTDTVYGLGANIFNNQAVQRIYKIKHRERSKPLSVLVSDI 71 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 ++ A +D S + + PGP T +L+ T + P +++ K R+P ++ Sbjct: 72 ESLELIAHLDDHSREVVNKWLPGPFTFILNKQKT--VSPYVSSSTKVGV-RIPDNKIARE 128 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L + P+ SAN + + +++N IL I I L ID G G ST++++ Sbjct: 129 LASIF--PITTTSANIANEETLSNPHDIL-KQIGDCIDLAIDVGDLTGGKPSTVIDLTSA 185 Query: 187 KKVRILRPGGL--EIETLKRAI 206 K ++R G + ++E++K I Sbjct: 186 KP-SLVRKGLISNDLESIKEDI 206 >gi|313127651|ref|YP_004037921.1| translation factor sua5 [Halogeometricum borinquense DSM 11551] gi|312294016|gb|ADQ68476.1| translation factor SUA5 [Halogeometricum borinquense DSM 11551] Length = 208 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 74/156 (47%), Gaps = 4/156 (2%) Query: 28 PTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLF 87 PTETVYGL D + A+ R++E+K R PL V D+ +++ + F Sbjct: 24 PTETVYGLGADGTDADAVERVFELKGRSRDKPLSIGVPDVDAAREYTRLTSFDADFMAEF 83 Query: 88 WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANRSGQI 146 PGP+T+V++ S + + TA RVP P+ SANRSG Sbjct: 84 LPGPVTVVVERGSQ--LPDVLTAGGDRVGVRVPDHEVALDFFRRADCPVTATSANRSGAP 141 Query: 147 SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 S+T+ L +++ + +ID G + G ST+V+ Sbjct: 142 SVTHPDQ-LDATLKDSVGAVIDAGEAPGGTGSTVVD 176 >gi|326332909|ref|ZP_08199166.1| Sua5/YciO/YrdC/YwlC family protein [Nocardioidaceae bacterium Broad-1] gi|325949267|gb|EGD41350.1| Sua5/YciO/YrdC/YwlC family protein [Nocardioidaceae bacterium Broad-1] Length = 242 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 56/180 (31%), Positives = 92/180 (51%), Gaps = 7/180 (3%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP-LSLHL 83 + +PT+TVYG+A D+ + A+ L K R P +S+++ + A+ P + L Sbjct: 30 VIVPTDTVYGVAADAFDKGAVAGLLAAKGRGRAMPPPVLISNVATLDALATRIPDWARTL 89 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANR 142 + FWPG LT+V + L A +T R+P +++I+ G PLA SANR Sbjct: 90 VEEFWPGALTVVFHQQPSLQWD-LGEAR-QTVAVRIPDSDILRRIIDRVG-PLATSSANR 146 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202 + + TN + K + IIDGG S +G STIV+ ++ ++LR G + I+ + Sbjct: 147 TTMPAATNADQ-ADEMLGKMVRAIIDGGESPVGEASTIVSATGDEP-KVLREGAISIDRI 204 >gi|315125143|ref|YP_004067146.1| double-stranded RNA-binding protein [Pseudoalteromonas sp. SM9913] gi|315013656|gb|ADT66994.1| double-stranded RNA-binding protein [Pseudoalteromonas sp. SM9913] Length = 187 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 54/169 (31%), Positives = 80/169 (47%), Gaps = 11/169 (6%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 ++D ++L A L+ G I PTE VYGL D N A+ RL IK+RP LI Sbjct: 1 MSDLSSLSAAITSLEQGDVILYPTEAVYGLGCDPDNQQAVERLLSIKQRPVEKGLILIAD 60 Query: 66 DISMVKKHASVDPLSLHL---AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 + + K+ VD L + A +F WPG LT V+ +T T T RV Sbjct: 61 NYGQLLKY--VDDAKLPMDKRADIFSSWPGALTWVMPAAKST--PKWLTGQFDTIAVRVT 116 Query: 121 CGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 T K+L + +G PL SAN +GQ ++T++ +++ +D Sbjct: 117 NHPTVKRLCQQFGKPLVSTSANLTGQATVTSIVEA-QQQFAEQVSFYVD 164 >gi|317131938|ref|YP_004091252.1| SUA5/yciO/yrdC domain [Ethanoligenens harbinense YUAN-3] gi|315469917|gb|ADU26521.1| SUA5/yciO/yrdC domain [Ethanoligenens harbinense YUAN-3] Length = 216 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 63/200 (31%), Positives = 97/200 (48%), Gaps = 11/200 (5%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 E + G PI IPT+T Y LA + + AI ++++ KKRP L D S K+ Sbjct: 16 EHMQKGNPIIIPTDTNYNLACLANSAEAIDKIFKYKKRPKNKALSLFFLDPSDWNKYGIC 75 Query: 77 DPLSL--HLAKLFWPGPLTLVLDLLSTTDIHPL---STANLKTACFRVPCGFTKKLIETY 131 D + LA+ FWPGPL ++++ ++ + L ST L + F L Sbjct: 76 DNERIIERLAETFWPGPLNIIINKRNSDYDYMLNNKSTIALGSVSNPTWREFMSHL---N 132 Query: 132 GHPLAIPSANRSGQISITNV-KHILSSSICKEIPLIIDGGIS-KIGLESTIVNVQCEKKV 189 G P+AI SAN SG + T V K I S + + I+ + STIV+V + V Sbjct: 133 GEPIAITSANISGTVDNTLVTKEIAISQMKNCVDFFIESSNAISTSKSSTIVSV-IDNTV 191 Query: 190 RILRPGGLEIETLKRAISVE 209 +++R G ++ + L A+ VE Sbjct: 192 KLIREGDIDKKALDNALHVE 211 >gi|288800032|ref|ZP_06405491.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella sp. oral taxon 299 str. F0039] gi|288333280|gb|EFC71759.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella sp. oral taxon 299 str. F0039] Length = 189 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 52/166 (31%), Positives = 84/166 (50%), Gaps = 13/166 (7%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 +T S ++ A E L G I PT+TV+G+ D+ N +A+ R+YE+KKR +IC V Sbjct: 1 MTQSEDIKNAVEVLKRGGLILYPTDTVWGIGCDATNESAVARVYELKKRADSKAMICLVD 60 Query: 66 DISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123 S V+++ P ++ L +L P T++LD ++ P A + R+ F Sbjct: 61 SDSRVQRYVKNVPNVAWDLMELA-DKPTTIILD--DAVNLAPNLIAEDGSIAIRITREAF 117 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169 +K+L + PL SAN SG+ + +N + I+ IIDG Sbjct: 118 SKELCYRFQKPLVSTSANISGEPTASNYRDIVQE--------IIDG 155 >gi|114561217|ref|YP_748730.1| SUA5/yciO/yrdC domain-containing protein [Shewanella frigidimarina NCIMB 400] gi|122301201|sp|Q08A23|RIMN_SHEFN RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|114332510|gb|ABI69892.1| translation factor SUA5 [Shewanella frigidimarina NCIMB 400] Length = 188 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 53/181 (29%), Positives = 86/181 (47%), Gaps = 10/181 (5%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 + G IA PTE V+GL D N +AI +L +K+RP LI S + + + Sbjct: 13 IQQGGVIAYPTEAVFGLGCDPDNDSAIEKLLVVKQRPWQKGLILVASSFEQLLPYLDITQ 72 Query: 79 LS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134 L+ L A+ WPGP T V+ + S + L + RV ++L +T P Sbjct: 73 LTEQQLQFAQSKWPGPFTFVMPIQS--HVSKLLCGEFDSIAVRVSAHPVVRELCDTLNKP 130 Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194 L SAN +G+ + + +HI+ + +I +I G + + STI++ + +ILR Sbjct: 131 LVSTSANLAGEQPVVDAQHII-TDFSDKIDALILGKLGEQRQPSTIIDA---RSGQILRN 186 Query: 195 G 195 G Sbjct: 187 G 187 >gi|159905153|ref|YP_001548815.1| Sua5/YciO/YrdC/YwlC family protein [Methanococcus maripaludis C6] gi|159886646|gb|ABX01583.1| Sua5/YciO/YrdC/YwlC family protein [Methanococcus maripaludis C6] Length = 206 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 57/219 (26%), Positives = 110/219 (50%), Gaps = 28/219 (12%) Query: 1 MQIMSITDSN------ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR 54 M+ I++SN + A + + G I T+T+YGL+ ++ + AI ++Y IK+R Sbjct: 1 MKTFEISESNLKNCEKEIETAKKMILNGKVILCGTDTLYGLSTNALDKNAIEKIYSIKER 60 Query: 55 PAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVL-------DLLSTTDIHPL 107 P+ + + ++ + VD ++ + + F PGP+T++L D+L D+ Sbjct: 61 DPNKPISISLGEKKQIENYVYVDSIAKKIIEKFMPGPITVILKKKDIIPDILGKDDVG-- 118 Query: 108 STANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 R+P + I PL SAN SG+ + ++++ + + I +++ LII Sbjct: 119 ---------VRIPDNDVIRKIAIV--PLTTTSANISGKTAPSSLEEV-DTVIKEKVDLII 166 Query: 168 DGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAI 206 + G SK ++STIV V K+ ++R G + E + +A+ Sbjct: 167 NTGPSKYKVQSTIVKV-IGGKIELIREGKIPFEEILKAV 204 >gi|320096084|ref|ZP_08027684.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 178 str. F0338] gi|319976964|gb|EFW08707.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 178 str. F0338] Length = 228 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 57/193 (29%), Positives = 83/193 (43%), Gaps = 5/193 (2%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLSLHL 83 + IPT+TVYG+ D+ NP A+ RL +K R P V+D V + V + L Sbjct: 35 LVIPTDTVYGIGADAANPGAVARLLAVKGRGRQMPPPVLVADADAVDRLCEDVPEAARRL 94 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRS 143 A+ WPGPLTLVL T T RVP + P+A+ SAN + Sbjct: 95 ARAHWPGPLTLVLRARDGLGWDLGDTGG--TIALRVPDHPGALALLRATGPMAVTSANTT 152 Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203 G+ T + + + + L D G + ST+V R+LR G L ++ + Sbjct: 153 GRPPATTIDQAV-AYFGGAVDLYADAGPTASSTPSTVVAF-AGGAARVLRHGALGVDDIA 210 Query: 204 RAISVELEYCVDE 216 +E E E Sbjct: 211 ALAPLEAEGRAGE 223 >gi|284163341|ref|YP_003401620.1| Sua5/YciO/YrdC/YwlC family protein [Haloterrigena turkmenica DSM 5511] gi|284012996|gb|ADB58947.1| Sua5/YciO/YrdC/YwlC family protein [Haloterrigena turkmenica DSM 5511] Length = 202 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 61/205 (29%), Positives = 93/205 (45%), Gaps = 12/205 (5%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS-- 65 D + L +A E + AG + PTETVYGL D + A+ R++E K R P+ V Sbjct: 2 DDDDLERAAEAIRAGELVVYPTETVYGLGADGLDADAVERVFEAKGRDRSKPVSVAVPTF 61 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFT 124 + ++ + + A F PGP+TL+ + T + + TA RVP C Sbjct: 62 ETALEEGYVRASERERAFADEFLPGPVTLLCE--RTEALPDVLTAGRDRVGIRVPDCEPA 119 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--GLESTIVN 182 + +E P+ SAN SG+ S V+ I + + + L D I + ST+V+ Sbjct: 120 LRFLEAAERPVTATSANVSGEPSARRVEDIGQQVLDEAVVLEADDLYESIEETVPSTVVD 179 Query: 183 VQCEKKVRILRPGGL--EIETLKRA 205 ++ E I R G L EIE A Sbjct: 180 LEAET---IHRRGALADEIEAWLEA 201 >gi|282851604|ref|ZP_06260969.1| SUA5 domain protein [Lactobacillus gasseri 224-1] gi|282557572|gb|EFB63169.1| SUA5 domain protein [Lactobacillus gasseri 224-1] Length = 204 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 64/205 (31%), Positives = 97/205 (47%), Gaps = 17/205 (8%) Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 +I G P+ PSAN S + S T H+ + +I IID G ++IGLESTIV++ E Sbjct: 1 MISELGKPIVGPSANTSTKPSPTTAGHVYHD-LKGKIAGIIDNGPTEIGLESTIVDLSVE 59 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETST---PQSPGMLKSHYAPRSQVRLRAIHV 243 +LRPG + E + + + E+ T T P++PGM HYAP + V + V Sbjct: 60 TPT-VLRPGEITPEEISKVLGEEVLMNKGTTQTKGVPKAPGMKYRHYAPSAPVFI----V 114 Query: 244 NPREALIRF------GNVPIKNIENAIISLNLSKTG-KLKEAAFNLFNYMKIADDSGASS 296 + E + G + + + I S N G + +AA NLF ++ D Sbjct: 115 DKEEDFSKIKWDKETGVAALDEVLDKINSSNKYSLGTTIDKAAHNLFGALRYFDSENNIK 174 Query: 297 IAFSSIPNHG-LGIAINNRLERAAA 320 + +HG + A NRL +AAA Sbjct: 175 RIYVQGFDHGTISPAYMNRLNKAAA 199 >gi|219850818|ref|YP_002465250.1| Sua5/YciO/YrdC/YwlC family protein [Methanosphaerula palustris E1-9c] gi|219545077|gb|ACL15527.1| Sua5/YciO/YrdC/YwlC family protein [Methanosphaerula palustris E1-9c] Length = 193 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 58/191 (30%), Positives = 93/191 (48%), Gaps = 20/191 (10%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + +++A + L + PT+T+YGL D+ + A+ +YE K RP P+ VSD M Sbjct: 2 DRIKEAVKVLHRDGLVVYPTDTIYGLGADALSDEAVAAVYEAKHRPLAKPISIAVSDRDM 61 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKKL 127 + A V P++ + F PGP T+V L + P + T R+P +L Sbjct: 62 LAALAVVTPVAEQFIEAFLPGPFTVV---LKAKKVLPETLTGGTGMIGLRIPDHPIALEL 118 Query: 128 IETYGHPLAIPSANRSGQ---ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 I + P+ SAN SG ++I +V H+ L+ID G GL ST+V++ Sbjct: 119 IREFDGPITATSANLSGGKDPVTINDV-HV-------RYDLLIDAG-RLTGLPSTVVDLV 169 Query: 185 CEKKVRILRPG 195 +R++RPG Sbjct: 170 ---DMRMIRPG 177 >gi|117925136|ref|YP_865753.1| translation factor SUA5 [Magnetococcus sp. MC-1] gi|117608892|gb|ABK44347.1| translation factor SUA5 [Magnetococcus sp. MC-1] Length = 206 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 51/161 (31%), Positives = 73/161 (45%), Gaps = 3/161 (1%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 LR+A + L G I PT+T YGL N + R+ IK+ + L +D+S + Sbjct: 17 LRQAAQILQEGGVIVYPTDTTYGLGCVMSNRKGVERVVRIKQLSDTHQLTLLCADLSDIA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130 +A VD L K F PGP T VL+ ++ ++ KT RVP L+E Sbjct: 77 NYARVDNSCYRLLKRFLPGPYTFVLE--ASREVPKKILPRRKTIGLRVPNHQICHALLEL 134 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171 G PL S G I ++ + ++ LIIDGGI Sbjct: 135 VGEPLLSTSVRLPGHEEIFTDPSLIRDQLEHQVDLIIDGGI 175 >gi|227080291|ref|YP_002808842.1| Sua5/YciO/YrdC family protein [Vibrio cholerae M66-2] gi|298501236|ref|ZP_07011035.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio cholerae MAK 757] gi|227008179|gb|ACP04391.1| Sua5/YciO/YrdC family protein [Vibrio cholerae M66-2] gi|297540108|gb|EFH76170.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio cholerae MAK 757] Length = 188 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 56/190 (29%), Positives = 92/190 (48%), Gaps = 14/190 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++A + L G IA PTE V+GL D N TA++RL IK+RP +I + + ++ Sbjct: 7 LQQAVDALRKGCVIAYPTEGVFGLGCDPDNQTAMQRLLAIKQRPVEKGVILIAASYAQLR 66 Query: 72 KHASVDPLSL-HLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRV---PCGFTK 125 + L+ LA++ WP PLT V+ ++ D T RV P + Sbjct: 67 PYVDETQLTADQLAQVLASWPAPLTWVMP--ASGDTPSWVRGQFDTVAVRVSDHP--VVQ 122 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 KL +G PL SAN SGQ + + ++ + +I ++++G S S I + Sbjct: 123 KLCLAFGKPLTSTSANLSGQPACVTQQEVM-VQLGNQIAVVVEGKTSGRCGPSEIRDA-- 179 Query: 186 EKKVRILRPG 195 + +++LR G Sbjct: 180 -RSLQVLRQG 188 >gi|149370609|ref|ZP_01890298.1| hypothetical protein SCB49_14135 [unidentified eubacterium SCB49] gi|149356160|gb|EDM44717.1| hypothetical protein SCB49_14135 [unidentified eubacterium SCB49] Length = 186 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 86/182 (47%), Gaps = 5/182 (2%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 KA E L G I PT+TV+G+ D+ NP AI ++Y +KKR LIC V D M+ + Sbjct: 7 KALEVLKKGGLILYPTDTVWGIGCDATNPEAIAKVYALKKRVETKSLICLVHDFKMLNQF 66 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGFTKKLIETYG 132 P + + P T+V D I A T FRV F+K L+ + Sbjct: 67 VEDIPEVAYDILKYAEKPTTIVYD--DPIRIAENIVAPDNTLGFRVTDDAFSKNLVRKFR 124 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK-IGLESTIVNVQCEKKVRI 191 P+ SAN SGQ + + K I S I + +++ +K G S I+ + + V+I Sbjct: 125 WPVVATSANVSGQKTPKSFKDI-SQEILDGVDYVVNLNRNKPSGKPSAIIKLSKDGGVKI 183 Query: 192 LR 193 +R Sbjct: 184 IR 185 >gi|289178307|gb|ADC85553.1| SUA5 protein [Bifidobacterium animalis subsp. lactis BB-12] Length = 231 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 71/221 (32%), Positives = 104/221 (47%), Gaps = 14/221 (6%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M + D L A + G + IPT+TVYG+A D N AI R+Y K RPA L Sbjct: 10 MADVRSADEQTLADARRIIADGGLVVIPTDTVYGIACDPCNAAAIARIYAAKHRPADKAL 69 Query: 61 ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANL-----KT 114 + D+S++ K P L LA+ F PG + + D PL T + +T Sbjct: 70 QVIMPDLSVLPKLGLALPTPLDALARRFLPGAFSPI---AVADDDSPLLTVRVDDSGART 126 Query: 115 ACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173 RVP T +++ G P+A SANRSG S V + +++ + L IDGG + Sbjct: 127 QGIRVPDSEVTLRVLRAIG-PVAASSANRSGNESAQTVDEAV-AALGDSVDLYIDGGPTV 184 Query: 174 IGLESTIVNVQCE--KKVRILRPGGLEIETLKRAISVELEY 212 ST+V + + ILR G LE + ++RA+ E + Sbjct: 185 SHTASTVVAADPDAPDGIVILREGRLEADAVRRAVREEARH 225 >gi|307107023|gb|EFN55267.1| hypothetical protein CHLNCDRAFT_35508 [Chlorella variabilis] Length = 284 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 84/183 (45%), Gaps = 4/183 (2%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A E L IA+PT+T+YGLA +R+ + +Y K+R PL V+DI+ V + A Sbjct: 83 AAEALGRAEVIAVPTDTLYGLAACARSSQGVAHIYATKRRGDHKPLAIAVADIADVPRFA 142 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGH 133 V L L + PGP+TL+L + + R+P F + + + Sbjct: 143 DVQHLPEGLLEDLLPGPVTLLLQRRPDAPLAAQFNPGVGAIGIRIPDSAFIRAVCRQHRA 202 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKKVRIL 192 LA+ SAN SG +S +V + L+ DGG G ST++++ + + Sbjct: 203 ALALTSANISGSMSSVDVGEF--QELWPSCSLVFDGGQLDAGRSGSTVIDLTQPGQFSVA 260 Query: 193 RPG 195 R G Sbjct: 261 RRG 263 >gi|303244474|ref|ZP_07330809.1| Sua5/YciO/YrdC/YwlC family protein [Methanothermococcus okinawensis IH1] gi|302485172|gb|EFL48101.1| Sua5/YciO/YrdC/YwlC family protein [Methanothermococcus okinawensis IH1] Length = 212 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 52/176 (29%), Positives = 92/176 (52%), Gaps = 8/176 (4%) Query: 29 TETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFW 88 T+T+YGL + + A++++Y++KKR P+ + D ++K+A V+ +S + F Sbjct: 43 TDTLYGLCANVLDENAVKKVYKLKKRDLNKPISIFLKDKEDIEKYAYVNEISKKIIDKFL 102 Query: 89 PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISI 148 PG LT++ L D P + + R+P ++ + E PL SAN SG+ Sbjct: 103 PGALTII---LKKKDTIP-NIVSKDYIGIRIPD--SEIIRELSIVPLTATSANLSGEKPP 156 Query: 149 TNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKR 204 T+VK I S + K + LIID G+ K STI+ + + ++R G + + +K+ Sbjct: 157 TSVKEI-SDELRKNVDLIIDTGVCKYKTPSTIIKI-LNDNIELIREGAIPFDKIKK 210 >gi|57032998|gb|AAH88928.1| LOC496333 protein [Xenopus laevis] Length = 204 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 95/186 (51%), Gaps = 16/186 (8%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L G I +PT+T+YG+A ++N +I +Y +K R PL V ++ + ++ V+ Sbjct: 6 LQQGGVIGVPTDTIYGIACLAQNSQSISNIYNVKGRNGTKPLAICVGNVEDIYRYCQVN- 64 Query: 79 LSLHLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPL 135 + L + PGP+TLV++ +++P ++ R+P F ++L E PL Sbjct: 65 VPDQLLRDLLPGPVTLVMERSGRLNKELNPFTSL----VGVRIPDHAFIRQLAEVCSEPL 120 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGG-ISKIG-----LESTIVNVQCEKKV 189 A+ SAN S Q S V+ + ++ L++DGG I ++ L ST+V++ K Sbjct: 121 ALTSANISSQESTLTVEEF--RDLWPKLSLVVDGGPIGEVSSPECRLGSTVVDLSVPGKF 178 Query: 190 RILRPG 195 ++R G Sbjct: 179 IVIRDG 184 >gi|329945874|ref|ZP_08293561.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328528322|gb|EGF55300.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 246 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 70/218 (32%), Positives = 104/218 (47%), Gaps = 24/218 (11%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP---LICHVSD 66 +AL+ ACE L AG + +PT+TVYG+ ++ + A+ RL K R P L+ +D Sbjct: 20 DALQPACEHLRAGGLVILPTDTVYGIGCNAADAGAVERLLASKGRGRQMPPPVLVAGPAD 79 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVP-CGF 123 ++ V A V + L + FWPGPLTL+LD + T D+ S T R+P Sbjct: 80 LTGVV--AQVPEAARILMEAFWPGPLTLILDADAALTWDLGETS----GTIAIRMPDHEL 133 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILS---------SSICKEIPLIIDGGISKI 174 L+ G PLA+ SAN +G T+ + ++ E L++DGG + Sbjct: 134 ALDLLRRSG-PLAVTSANPTGAPPATDAASARAAFPGRVRGVDAVGTEDILLLDGGATSG 192 Query: 175 GLESTIVNVQCEKKV--RILRPGGLEIETLKRAISVEL 210 + STIV + RILR G L L+R V + Sbjct: 193 PVPSTIVTLAGAHACSPRILRKGVLSPADLERVAGVNV 230 >gi|329116378|ref|ZP_08245095.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus parauberis NCFD 2020] gi|326906783|gb|EGE53697.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus parauberis NCFD 2020] Length = 196 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 66/209 (31%), Positives = 101/209 (48%), Gaps = 21/209 (10%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDIS 68 +++ E + G + +PTETVYG+ + + A+ +Y++K+RP AMN I DI Sbjct: 1 MKELIEQIKNGQAVVLPTETVYGIFAKAMDENAVDNVYQLKQRPRDKAMNLNIASYQDIL 60 Query: 69 MVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 ++ P L L F PGPLT++L + + + T FR+P T + Sbjct: 61 ---DYSQGQPAYLEKLVNAFLPGPLTIILK--ANQKVPAWINSGKTTVGFRMPNHPVTCQ 115 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG---GISKIGLESTIVNV 183 +I+ G PL PSAN SG S K I+ K +DG + G +STI++V Sbjct: 116 IIKETG-PLIGPSANISGDDSGKTFKAIM-----KAFNYQVDGYSDDAALTGQDSTIIDV 169 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEY 212 K +ILR G + E L + ELE+ Sbjct: 170 SG-LKAKILRQGSITKEELLDVVP-ELEF 196 >gi|257790786|ref|YP_003181392.1| Sua5/YciO/YrdC/YwlC family protein [Eggerthella lenta DSM 2243] gi|257474683|gb|ACV55003.1| Sua5/YciO/YrdC/YwlC family protein [Eggerthella lenta DSM 2243] Length = 202 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 65/200 (32%), Positives = 98/200 (49%), Gaps = 22/200 (11%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP---LICHVS 65 S++ R+A L G + PTETVYGL V + LY++K+R P L+ V Sbjct: 5 SSSKREAVAALKRGEAVIFPTETVYGLGVSVEAAASPEALYDLKERDRGKPVSWLVGGVD 64 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC----FRVPC 121 D+ H V L+ LA+ +WPGPLTL+++ +D P A ++A R+P Sbjct: 65 DLDRYGAH--VPDLARRLARAYWPGPLTLIVE---ASDAVP---AAFRSAAGSIGLRMPD 116 Query: 122 GFTK-KLIETYGHPLAIPSANRSG---QISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 T +LIE G PLA SAN SG + + +L++ C + + D K G+ Sbjct: 117 NDTALELIEAVGCPLATTSANISGLQAPGAFDALDPVLAA--CVGVVVPDDTDDDKSGVA 174 Query: 178 STIVNVQCEKKVRILRPGGL 197 ST+++ RILR G + Sbjct: 175 STVLDCTVNPP-RILREGAV 193 >gi|183602495|ref|ZP_02963860.1| conserved protein in the Sua5/YciO/YrdC family [Bifidobacterium animalis subsp. lactis HN019] gi|219683538|ref|YP_002469921.1| Sua5/YciO/YrdC family protein [Bifidobacterium animalis subsp. lactis AD011] gi|241190569|ref|YP_002967963.1| Sua5/YciO/YrdC family protein [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195975|ref|YP_002969530.1| Sua5/YciO/YrdC family protein [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218136|gb|EDT88782.1| conserved protein in the Sua5/YciO/YrdC family [Bifidobacterium animalis subsp. lactis HN019] gi|219621188|gb|ACL29345.1| Sua5/YciO/YrdC family protein [Bifidobacterium animalis subsp. lactis AD011] gi|240248961|gb|ACS45901.1| Sua5/YciO/YrdC family protein [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250529|gb|ACS47468.1| Sua5/YciO/YrdC family protein [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793556|gb|ADG33091.1| Sua5/YciO/YrdC family protein [Bifidobacterium animalis subsp. lactis V9] Length = 222 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 71/221 (32%), Positives = 104/221 (47%), Gaps = 14/221 (6%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M + D L A + G + IPT+TVYG+A D N AI R+Y K RPA L Sbjct: 1 MADVRSADEQTLADARRIIADGGLVVIPTDTVYGIACDPCNAAAIARIYAAKHRPADKAL 60 Query: 61 ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANL-----KT 114 + D+S++ K P L LA+ F PG + + D PL T + +T Sbjct: 61 QVIMPDLSVLPKLGLALPTPLDALARRFLPGAFSPI---AVADDDSPLLTVRVDDSGART 117 Query: 115 ACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173 RVP T +++ G P+A SANRSG S V + +++ + L IDGG + Sbjct: 118 QGIRVPDSEVTLRVLRAIG-PVAASSANRSGNESAQTVDEAV-AALGDSVDLYIDGGPTV 175 Query: 174 IGLESTIVNVQCE--KKVRILRPGGLEIETLKRAISVELEY 212 ST+V + + ILR G LE + ++RA+ E + Sbjct: 176 SHTASTVVAADPDAPDGIVILREGRLEADAVRRAVREEARH 216 >gi|147903663|ref|NP_001082498.1| yrdC domain containing [Xenopus laevis] gi|49118602|gb|AAH73618.1| LOC398509 protein [Xenopus laevis] Length = 236 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 55/195 (28%), Positives = 96/195 (49%), Gaps = 20/195 (10%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L + L G I +PT+T+YG+A ++N +I +Y +K R PL V ++ + Sbjct: 31 LNTSLGILQQGGVIGVPTDTIYGIACLAQNSQSISNIYNVKGRNGTKPLAICVGNVEDIY 90 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVPC-GFTKKLI 128 ++ V+ + L + PGP+TLV++ +++P ++ R+P F ++L Sbjct: 91 RYCRVN-VPDQLLRDLLPGPVTLVMERSDRLNKELNPFTSL----VGVRIPDHAFIRQLA 145 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--------LESTI 180 E PLA+ SAN S Q S V+ + ++ L++DGG IG L ST+ Sbjct: 146 EVCSEPLALTSANISSQESTLTVEEF--RDLWPKLSLVVDGG--PIGEHSSPECRLGSTV 201 Query: 181 VNVQCEKKVRILRPG 195 V++ K ++R G Sbjct: 202 VDLSVPGKFTVIRDG 216 >gi|302341611|ref|YP_003806140.1| Sua5/YciO/YrdC/YwlC family protein [Desulfarculus baarsii DSM 2075] gi|301638224|gb|ADK83546.1| Sua5/YciO/YrdC/YwlC family protein [Desulfarculus baarsii DSM 2075] Length = 208 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 91/185 (49%), Gaps = 13/185 (7%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV-SDISMVKKHASVDPLSLHL 83 +A PTET+YGLAVD+ N A+ RL +K+RP P + ++ + A++ PL+ L Sbjct: 32 VAFPTETLYGLAVDAANHRALARLAALKERPDDKPFPLIIGAEGQIAPLAATLTPLARRL 91 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLST----ANLKTACFRVPCGFTKKLIETYGHPLAIPS 139 WPGPLT+VL + + P T L+ + V G L G + S Sbjct: 92 MAAHWPGPLTIVLA--AAPGLPPELTHQGGVALRLSSHPVAAGLALAL----GRAVTATS 145 Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEI 199 AN +G+ + L ++ I L++DGG G STIV + ++ ++LR G + + Sbjct: 146 ANLAGRPAQAR-PEALDPALLARIDLLLDGGPCPGGAPSTIV-LASGRRAKVLRQGAVAL 203 Query: 200 ETLKR 204 +R Sbjct: 204 AEEER 208 >gi|119961897|ref|YP_948325.1| Sua5/YciO/YrdC/YwlC family protein [Arthrobacter aurescens TC1] gi|119948756|gb|ABM07667.1| putative Sua5/YciO/YrdC/YwlC family protein [Arthrobacter aurescens TC1] Length = 304 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 88/189 (46%), Gaps = 13/189 (6%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP---LICHVSDISMVKKHASVDPLSL 81 I +PT+TVYG+A D+ +P A+ L K R P LI V+ + + D + Sbjct: 30 IVLPTDTVYGIAADAFSPLAVTMLLASKGRSRQMPPPVLIPRVNALDGLATDVPAD--AR 87 Query: 82 HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSAN 141 LA+ FWPG LTL+L + D T T R+P + PLA+ SAN Sbjct: 88 ALAQAFWPGGLTLILHAQPSLDWDLGDTKG--TVALRMPDDQIALELLGLTGPLAVSSAN 145 Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGISKI----GLESTIVNVQCEKKVRILRPGGL 197 R+GQ + + + + + ++GG I L STIV+ R++R G + Sbjct: 146 RTGQEAAQTASEA-RLQLAESVEVYLEGGFRPIKGTAALPSTIVDA-TSTPFRVVRQGAI 203 Query: 198 EIETLKRAI 206 E+E L+ + Sbjct: 204 ELERLREIV 212 >gi|326774096|ref|ZP_08233378.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces viscosus C505] gi|326636235|gb|EGE37139.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces viscosus C505] Length = 253 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 66/224 (29%), Positives = 101/224 (45%), Gaps = 26/224 (11%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + L+ AC+ L AG + +PT+TVYG+ ++ + A+ RL K R P V+D + Sbjct: 17 DPLQPACDHLRAGGLVILPTDTVYGIGCNAADAAAVERLLAAKGRGRQMPPPVLVADPAD 76 Query: 70 VKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 + + P + H L + FWPG LTL+L+ T T T R+P T L Sbjct: 77 LIGLVAQVPEAAHALMEAFWPGALTLILEADETLTWDLGETGG--TLAVRMPAHELTLNL 134 Query: 128 IETYGHPLAIPSANRSG-------------------QISITNVKHILSSSICKEIPLIID 168 + G PLA+ SAN +G + + + +E L++D Sbjct: 135 LRRSG-PLAVTSANPTGAPPATDAASARAAFPGRVRSVDELTADGEAAGADWREDILLLD 193 Query: 169 GGISKIGLESTIVNVQCE--KKVRILRPGGLEIETLKRAISVEL 210 GG + + STIV + E + RILR G L + L+R V L Sbjct: 194 GGATPGPVPSTIVTLAGEHARAPRILRQGVLALADLERVAGVAL 237 >gi|116671163|ref|YP_832096.1| translation factor SUA5 [Arthrobacter sp. FB24] gi|116611272|gb|ABK03996.1| translation factor SUA5 [Arthrobacter sp. FB24] Length = 245 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 51/189 (26%), Positives = 89/189 (47%), Gaps = 11/189 (5%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-L 83 + PT+TVYG+ D+ +P A+ L K R P + ++ + A+ P L Sbjct: 30 VVFPTDTVYGIGADAFSPQAVTLLLASKGRSRKMPPPVLIPRLNALDGLATDVPAEARKL 89 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRS 143 A+ FWPG LT++ + D T T R+P + + T PLA+ SANR+ Sbjct: 90 AEAFWPGGLTMIFHAQPSLDWDLGETKG--TVALRMPADDVAQDLLTLTGPLAVSSANRT 147 Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIG------LESTIVNVQCEKKVRILRPGGL 197 GQ + + + + + + + ++GG+ G L STIV+ +R++R G + Sbjct: 148 GQPAARTAAEAM-TQLAESVEVYLEGGLRPDGDADADALPSTIVDATA-LPLRVVRQGAI 205 Query: 198 EIETLKRAI 206 +E L+ + Sbjct: 206 SVERLREVV 214 >gi|212288267|sp|Q6LLJ9|RIMN_PHOPR RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN Length = 185 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 46/139 (33%), Positives = 70/139 (50%), Gaps = 6/139 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + L++ L +G IA PTE V+G+ D NP A+ +L +K+RP LI ++ Sbjct: 2 DNLQQVVSALQSGEVIAYPTEGVFGVGCDPDNPQAVEKLLALKQRPIEKGLILIAANYQQ 61 Query: 70 VKKHASVDPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 ++ + LS L K+F WPGP+T V+ + DI PL T + RV + Sbjct: 62 LQPYIDDAQLSDLQKQKIFSTWPGPVTWVMPV--KKDISPLLTGKFTSIAVRVSDHPLVQ 119 Query: 126 KLIETYGHPLAIPSANRSG 144 KL +G P+ SAN +G Sbjct: 120 KLCHQFGKPITSTSANLTG 138 >gi|163752812|ref|ZP_02159936.1| hypothetical protein KAOT1_11667 [Kordia algicida OT-1] gi|161326544|gb|EDP97869.1| hypothetical protein KAOT1_11667 [Kordia algicida OT-1] Length = 186 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 56/192 (29%), Positives = 96/192 (50%), Gaps = 15/192 (7%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++K + L G I PT+TV+GL D+ N A+ ++Y++K R LIC VSDI Sbjct: 2 TEEIQKTFDELQLGNTILYPTDTVWGLGCDATNSEAVAKIYQLKNREESKALICLVSDIR 61 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA-NL----KTACFRVPCG- 122 M++++ P + P T++ D +P+ A NL T R+P Sbjct: 62 MLERYVENIPDVTYDLLEAANRPTTIIYD-------NPVGIAKNLVAADNTLAIRIPDDK 114 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIV 181 F +KLI + P+ SAN SGQ + + I S+ I + I++ K ++ STI+ Sbjct: 115 FCQKLIRKFKRPIVSTSANISGQPTPKSFDEI-SNEIKTNVDYIVNLKDDKKAVKPSTII 173 Query: 182 NVQCEKKVRILR 193 ++ +++I+R Sbjct: 174 QLRSNGEIKIIR 185 >gi|189424902|ref|YP_001952079.1| Sua5/YciO/YrdC/YwlC family protein [Geobacter lovleyi SZ] gi|189421161|gb|ACD95559.1| Sua5/YciO/YrdC/YwlC family protein [Geobacter lovleyi SZ] Length = 203 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 51/190 (26%), Positives = 91/190 (47%), Gaps = 6/190 (3%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 + + L G +A PT+T YGL N + R+Y++K+R P SD+S V ++ Sbjct: 17 QVVDCLKNGGIVAYPTDTTYGLGCSIFNKKGLERIYQVKQRDKRKPFSFICSDLSEVSRY 76 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYG 132 A + + + K + PGP T VL+ ++ ++ L KT R+P +++ G Sbjct: 77 ARLTNHAFKIMKRYLPGPYTFVLE--ASREVPDLLITKQKTVGIRMPDNAICLSIVQGLG 134 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192 P+ SAN SG+ + + I + + L++DGG+ + S + V K+ +L Sbjct: 135 VPIVTTSANLSGEDPVGDPLEI-NRLFGHALDLVVDGGLLTTDVSSVVSLVG--KEPELL 191 Query: 193 RPGGLEIETL 202 R G ++ L Sbjct: 192 REGAGDLSWL 201 >gi|68171141|ref|ZP_00544550.1| Sua5/YciO/YrdC/YwlC [Ehrlichia chaffeensis str. Sapulpa] gi|88658214|ref|YP_507600.1| Sua5/YciO/YrdC/YwlC family protein [Ehrlichia chaffeensis str. Arkansas] gi|67999466|gb|EAM86106.1| Sua5/YciO/YrdC/YwlC [Ehrlichia chaffeensis str. Sapulpa] gi|88599671|gb|ABD45140.1| Sua5/YciO/YrdC/YwlC family protein [Ehrlichia chaffeensis str. Arkansas] Length = 194 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 54/187 (28%), Positives = 97/187 (51%), Gaps = 7/187 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + L I PTETVY LA + + A++++Y+IK R PL +S+I +K Sbjct: 2 ISEAVQALKNKHLILFPTETVYALAGSAYSIEAVQKIYQIKGRSYNKPLSLLLSNIDKIK 61 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 + +++ + + + PGP+T VL + + + P N T R+P +++ Sbjct: 62 QFSTLTEHTFKIIQKLSPGPVTFVLPIHNYNKL-PRQFFN-DTIGIRIPDHPIALEILSN 119 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 + +P+ S N SGQ S+T H + +I + I +II+ G+EST++++ K Sbjct: 120 FDNPVVGTSVNISGQPSVT-ASHQVQETIKQHISVIIEDDSLVNGIESTVIDLTSYK--- 175 Query: 191 ILRPGGL 197 ILR G + Sbjct: 176 ILRTGAV 182 >gi|115495697|ref|NP_001069018.1| yrdC domain-containing protein, mitochondrial precursor [Bos taurus] gi|122145558|sp|Q0VC80|YRDC_BOVIN RecName: Full=YrdC domain-containing protein, mitochondrial; Flags: Precursor gi|111307172|gb|AAI20308.1| YrdC domain containing (E. coli) [Bos taurus] gi|296488877|gb|DAA30990.1| yrdC domain-containing protein, mitochondrial precursor [Bos taurus] Length = 276 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 65/196 (33%), Positives = 98/196 (50%), Gaps = 16/196 (8%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ALR A L AG +A+PT+T+YGLA + A+ +Y +K R PL + ++ Sbjct: 65 TEALRAAVAELRAGAVVAVPTDTLYGLACSASCSEALGAVYRVKGRSETKPLAVCLGRVA 124 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVP-CGFTK 125 V ++ V + L K PGP+TLV++ D++P + R+P F + Sbjct: 125 DVYRYCHVR-VPEGLLKDLLPGPVTLVMERSEELNKDLNPFT----PLVGIRIPDHAFMQ 179 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG------LEST 179 L + +G PLA+ SAN S Q S NV+ + + LIIDGG G L ST Sbjct: 180 DLAQMFGGPLALTSANLSSQSSSLNVEEF--QDLWPHLSLIIDGGPIGDGQSPECRLGST 237 Query: 180 IVNVQCEKKVRILRPG 195 +V++ K I+RPG Sbjct: 238 VVDLSVPGKFGIIRPG 253 >gi|52550560|gb|AAU84409.1| putative translation factor [uncultured archaeon GZfos9E5] Length = 222 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 53/179 (29%), Positives = 88/179 (49%), Gaps = 8/179 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ A + G + PTETVYGL D+ + A+R +Y+IK+R P+ VS Sbjct: 6 EDQIKTATAIIKNGGMVVYPTETVYGLGADAFSEAAVRNVYKIKRRAVTQPISIAVSSFE 65 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCG-FTKK 126 M+ + A +D + PGP+T+ L DI P + TA + R P + Sbjct: 66 MLHEVADIDFECFEIIAELLPGPVTI---LFKKKDIVPAILTAASEVVGVRFPDNEIVTR 122 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKE--IPLIIDGGISKIGLESTIVNV 183 +I+ G P+ SAN SG+ T ++ + K + +II+GG K + ST+V++ Sbjct: 123 IIKETG-PITATSANVSGRNPPTCIEEVEVELKLKVELLGIIINGGKCKYSMPSTVVDM 180 >gi|58584895|ref|YP_198468.1| putative translation factor, SUA5 [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419211|gb|AAW71226.1| Putative translation factor, SUA5 [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 208 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 59/202 (29%), Positives = 94/202 (46%), Gaps = 29/202 (14%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81 L + PTETVY LA ++ + AI ++Y++KKR PL VSD+ + K A ++ + Sbjct: 12 NLLVCFPTETVYALACNALDDGAIEKIYQVKKRSQDKPLSIFVSDVCSLVKIARLEEKYI 71 Query: 82 HLAKLFWPGPLTLVLDLLSTTDIHPLSTAN-LKTACFRVPCGFTKKLIETYGHPLAIPSA 140 L F PGP+T +L PL N L F+ G I HP+AI Sbjct: 72 DLINHFSPGPITYIL---------PLKNNNMLPNRFFKGSIG-----IRIPDHPIAISIL 117 Query: 141 NR------------SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 NR SG+ S+ I SI + + +I+G G+ESTI ++ + Sbjct: 118 NRLKIPIVATSINVSGEKSVCKASDI-PQSIKQHLSAVIEGDELVSGIESTITDL-TGNR 175 Query: 189 VRILRPGGLEIETLKRAISVEL 210 ++ LR G + ++ + + E+ Sbjct: 176 IKFLREGIISLQVVNNMLLTEI 197 >gi|325963838|ref|YP_004241744.1| translation factor SUA5 [Arthrobacter phenanthrenivorans Sphe3] gi|323469925|gb|ADX73610.1| translation factor SUA5 [Arthrobacter phenanthrenivorans Sphe3] Length = 281 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 53/189 (28%), Positives = 91/189 (48%), Gaps = 13/189 (6%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP---LICHVSDISMVKKHASVDPLSL 81 + PT+TVYG+A D+ +P A+ L K R P LI ++ + + S D + Sbjct: 30 VVFPTDTVYGIAADAFSPQAVTMLLVSKGRSRTMPPPVLIPRINALDGLATDVSAD--AR 87 Query: 82 HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSAN 141 LA+ FWPG LTL+L + D T T R+P + + T PLA+ SAN Sbjct: 88 KLAEAFWPGGLTLILHAQPSLDWDLGETKG--TVALRMPDDEIAQELLTLTGPLAVSSAN 145 Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGI----SKIGLESTIVNVQCEKKVRILRPGGL 197 R+GQ + + + + ++GG ++ + STIV+ ++R++R G + Sbjct: 146 RTGQ-APGQTAAAAREQLADSVEVYLEGGFRPREGELAVPSTIVDA-TGPRLRVVRNGAV 203 Query: 198 EIETLKRAI 206 ++ L+ + Sbjct: 204 SLDQLREHV 212 >gi|332017466|gb|EGI58189.1| YrdC domain-containing protein, mitochondrial [Acromyrmex echinatior] Length = 263 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 49/134 (36%), Positives = 71/134 (52%), Gaps = 4/134 (2%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A E L G IA+PT+TVYGLA + + AI+RLYEIK+R PL +S++ V Sbjct: 60 AVELLQQGKVIAVPTDTVYGLACLAADSHAIQRLYEIKQRDERKPLAICLSNVKEVGIWG 119 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133 +D + + K PGP T+ L T ++ + T RVP F + + + G Sbjct: 120 IIDNIPAGMLKDLLPGPYTICLR--RTPALNKNLNPGIDTVGIRVPNDKFIRSVAQIVG- 176 Query: 134 PLAIPSANRSGQIS 147 PLA+ SAN S ++S Sbjct: 177 PLALTSANVSNELS 190 >gi|241557718|ref|XP_002400036.1| YrdC domain-containing protein [Ixodes scapularis] gi|215499737|gb|EEC09231.1| YrdC domain-containing protein [Ixodes scapularis] Length = 208 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 92/188 (48%), Gaps = 10/188 (5%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 + A + L G +A+PT+T+YG+A ++N ++ +LY +K+R A P+ V + + + Sbjct: 1 QAAADILRNGGIVALPTDTIYGVAALAQNSESVEKLYRLKRRDAGKPIAICVHNADEISR 60 Query: 73 HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETY 131 A V L LF PG +T V T +++P RVP F +++ Sbjct: 61 WAQVSIPEKLLHHLF-PGAVTAVFQ--RTRELNPKLNPLTPLVGVRVPNSDFIRQVTRCC 117 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG-ISKIGLE---STIVNVQCEK 187 G PLA+ SAN S ++S +++ ++ + + DGG + GL ST++N Sbjct: 118 GEPLALTSANVSSEMSTLSIQEF--QALWPHLDAVFDGGNLGYNGLNREGSTVINFSIPG 175 Query: 188 KVRILRPG 195 I+R G Sbjct: 176 HFEIIRKG 183 >gi|226355747|ref|YP_002785487.1| translation factor (SUA5) [Deinococcus deserti VCD115] gi|226317737|gb|ACO45733.1| putative translation factor (SUA5) [Deinococcus deserti VCD115] Length = 214 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 63/206 (30%), Positives = 95/206 (46%), Gaps = 16/206 (7%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 A+ A L G +A P+ETV+GLA ++P A+ RLY +K R A P+ + + Sbjct: 18 TAVHNAAAALLRGAVVAYPSETVWGLAAHPQHPQAVERLYALKGRAADKPVQVSCAGVDE 77 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK---TACFRVP-CGFTK 125 +A P LA L WPGPLTLV T P A L RVP Sbjct: 78 ALHYAVPSPALSALAPL-WPGPLTLV------TAARPECPAYLAPHGQVGLRVPDHPVAL 130 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 L++ G LA S NRSG + + ++S + + + DGG G+ ST+V + Sbjct: 131 ALLQLSGGALATTSCNRSGLPAARTWEEAVTSGLGDLV--LPDGGHPAAGIASTVVLLPA 188 Query: 186 EKKVRILRPGGLEIETLKRAISVELE 211 + ++R G + TL++ + + E Sbjct: 189 GE---VVREGAVSAVTLRQLLVLHEE 211 >gi|256811084|ref|YP_003128453.1| Sua5/YciO/YrdC/YwlC family protein [Methanocaldococcus fervens AG86] gi|256794284|gb|ACV24953.1| Sua5/YciO/YrdC/YwlC family protein [Methanocaldococcus fervens AG86] Length = 207 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 61/201 (30%), Positives = 100/201 (49%), Gaps = 12/201 (5%) Query: 8 DSNALRKACEFLDA----GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 D N +K FL G I T+T+YG++ ++ + A++++Y+IKKR PL Sbjct: 13 DENERKKILNFLKEELLNGKIIICGTDTLYGISANALDENAVKKVYKIKKRDFNKPLSIC 72 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 V + ++K+A V+ L+ + F PGPLT++L I P A R+P Sbjct: 73 VKNKEEIEKYAYVNDLAKKIIDEFLPGPLTIIL---KKKPIIPDIVAK-DYIGIRIPDEA 128 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + E PL SAN SG+ S T V+ I + I K++ ++D G K STI+ + Sbjct: 129 I--IRELSIVPLTTTSANISGEKSPTAVEEI-NPEILKKVDYVVDIGKCKYSKPSTIIKI 185 Query: 184 QCEKKVRILRPGGLEIETLKR 204 + + K+ +R G + I +K Sbjct: 186 E-DNKIIPIREGAIPISKIKE 205 >gi|297569512|ref|YP_003690856.1| Sua5/YciO/YrdC/YwlC family protein [Desulfurivibrio alkaliphilus AHT2] gi|296925427|gb|ADH86237.1| Sua5/YciO/YrdC/YwlC family protein [Desulfurivibrio alkaliphilus AHT2] Length = 205 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 54/193 (27%), Positives = 93/193 (48%), Gaps = 5/193 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++ E L G I PT+TVYG+ D N A++R+Y++K+RP P +D+ V Sbjct: 15 IKQVVEALRQGAVICYPTDTVYGIGCDIFNQKAVKRIYQLKQRPLARPFSFICADLKDVS 74 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 +A V + + PGP T VL +T + + KT R+P +L+ Sbjct: 75 TYAHVSNTGYRVLRKSLPGPYTFVLP--ATKLVPKIMMTKQKTVGIRMPDHRICMELVTG 132 Query: 131 YGHPLAIPSANRSGQISITNVK-HILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G+P+ SA + + + + K++ LIID G ST+V+++ + + Sbjct: 133 LGNPILTTSAAPDDPDARQLIHAYEVEERYGKQVDLIIDSGPLAHSSPSTVVSLE-DDDL 191 Query: 190 RILRPGGLEIETL 202 ++LRPG +E L Sbjct: 192 QVLRPGKGSLEGL 204 >gi|52548883|gb|AAU82732.1| conserved hypothetical protein [uncultured archaeon GZfos19C7] Length = 224 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 53/178 (29%), Positives = 89/178 (50%), Gaps = 8/178 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + ++ A + G + PTETVYGL D+ + A+R +Y+IK+R P+ VS M Sbjct: 7 DQIKTATAIIKNGGMVVYPTETVYGLGADAFSEAAVRNVYKIKRRDLSRPISIAVSSFEM 66 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCG-FTKKL 127 + + A +D + PGP+T+ LL D+ P + TA + R P ++ Sbjct: 67 LHEVADIDSECFEIIAELLPGPVTI---LLRKKDVVPAILTAASEVVGVRFPDNEIATRI 123 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKE--IPLIIDGGISKIGLESTIVNV 183 I+ G P+ SAN SG+ T ++ + K + +II+GG K + ST+V++ Sbjct: 124 IKETG-PITATSANVSGRNPPTCIEEVEVELKLKVELLGIIINGGKCKYSMPSTVVDM 180 >gi|150403108|ref|YP_001330402.1| Sua5/YciO/YrdC/YwlC family protein [Methanococcus maripaludis C7] gi|150034138|gb|ABR66251.1| Sua5/YciO/YrdC/YwlC family protein [Methanococcus maripaludis C7] Length = 206 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 60/213 (28%), Positives = 105/213 (49%), Gaps = 16/213 (7%) Query: 1 MQIMSITDSN------ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR 54 M+ I++SN + A + + G I T+T+YGL+ ++ + AI ++Y IK+R Sbjct: 1 MKTFEISESNLKNCNDEIESARKMILDGKIILCGTDTLYGLSTNALDKKAIEKIYSIKER 60 Query: 55 PAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT 114 P+ + + ++ + VD + + + F PGP+T++ L DI P Sbjct: 61 DPNKPISISLGEKDQIENYVYVDKPAKKIIEKFMPGPITVI---LKKKDIIP-DILGKND 116 Query: 115 ACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKE-IPLIIDGGISK 173 R+P + I PL SAN SG+ + +++ + SI KE + LIID G K Sbjct: 117 VGVRIPDNDVIRKIAIV--PLTTTSANISGKTAPASLEEV--DSIIKEKVDLIIDTGPCK 172 Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIETLKRAI 206 ++STIV V + K+ ++R G + E + R + Sbjct: 173 YKVQSTIVKV-IDGKIELIREGKIPFEDILRTV 204 >gi|222825112|dbj|BAH22269.1| Sua5/YciO/YrdC/YwlC family protein [Wolbachia endosymbiont of Cadra cautella] Length = 195 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 56/182 (30%), Positives = 89/182 (48%), Gaps = 7/182 (3%) Query: 28 PTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLF 87 PTETVY LA ++ +I ++Y IKKR PL VS+I + A V + L F Sbjct: 18 PTETVYALACNALGKESIEKIYRIKKRSQNKPLSVFVSNIDSLINIAKVKEEYIDLINYF 77 Query: 88 WPGPLTLVLDLLSTTDIHPLSTANLKTAC-FRVPCG-FTKKLIETYGHPLAIPSANRSGQ 145 PGP+T +L L D L K + R+P ++ P+ S N SG+ Sbjct: 78 SPGPMTYILPL---QDNSILPNEFFKDSIGIRIPDHPIAISILNELKTPVVATSINISGE 134 Query: 146 ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRA 205 SI + I SI + + +I+ G+ESTI+++ + K+++LR G + ++T+ Sbjct: 135 KSICKARDI-PQSIKQHLSAVIEDDELVSGIESTIIDLTGD-KIKVLRKGKISLQTINNE 192 Query: 206 IS 207 S Sbjct: 193 FS 194 >gi|301614718|ref|XP_002936824.1| PREDICTED: uncharacterized protein ywlC-like [Xenopus (Silurana) tropicalis] Length = 243 Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 55/195 (28%), Positives = 93/195 (47%), Gaps = 9/195 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++LR LD G IPT+TVY LA ++P AI R+Y IK+RP+ P+ +S++ Sbjct: 29 TSSLRTIANILDNGGVCGIPTDTVYALAASCKHPEAINRIYSIKERPSEKPICICISNLD 88 Query: 69 MVKK-HASVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPL--STANLKTACFRVPCG 122 ++ PL L +PG ++ ++ + L + P + RVP Sbjct: 89 QLRVISPPFSPLLWRFMDLVYPGGISCIVQKGEWLKKLGVGPAYERVGTNDSIMIRVPDH 148 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 + PLAI SAN SG+ T+ ++ + + ++ ++ G S + ST+VN Sbjct: 149 TVTAHLTDMTGPLAITSANPSGESDSTHHDMVI-TRLSDKLDAVLCDGFSNELVGSTVVN 207 Query: 183 VQ--CEKKVRILRPG 195 E ++ILR G Sbjct: 208 CTKIDEGTIKILREG 222 >gi|315226266|ref|ZP_07868054.1| Sua5/YciO/YrdC/YwlC family protein [Parascardovia denticolens DSM 10105] gi|315120398|gb|EFT83530.1| Sua5/YciO/YrdC/YwlC family protein [Parascardovia denticolens DSM 10105] Length = 308 Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 82/170 (48%), Gaps = 7/170 (4%) Query: 18 FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77 L AG + IPT+TVYG+ D R+ + R++E K RP + +D +K + Sbjct: 49 LLSAGHVVVIPTDTVYGIIADPRSQVGVGRIFEAKSRPRTKSVQILCADAPQAQKLGLIF 108 Query: 78 P-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLST---ANLKTACFRVPCGFTKKLIETYGH 133 P + L F G + LV + D ++T ++ R P G + I + Sbjct: 109 PQIYQDLLAEFPKGAVCLVCPV--KDDCQLVTTRQEKGYRSQAVRFPAGRQARAIIDFVG 166 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 P+A SANRSG S T V+ + + + +PL +DGG + + ST++++ Sbjct: 167 PVAASSANRSGDKSATTVQEAI-AELGGSVPLYLDGGATSGPVASTVISL 215 >gi|296126570|ref|YP_003633822.1| Sua5/YciO/YrdC/YwlC family protein [Brachyspira murdochii DSM 12563] gi|296018386|gb|ADG71623.1| Sua5/YciO/YrdC/YwlC family protein [Brachyspira murdochii DSM 12563] Length = 198 Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 94/190 (49%), Gaps = 10/190 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 A +A + ++ G + PT+TVYG+ D+ N A+ R+Y+IK+R P + + + Sbjct: 16 AADEASKVINEGGIVVSPTDTVYGMLADAFNKEAVERIYQIKEREKNKPFLILIKNAEYS 75 Query: 71 KKHASVD-PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129 K + ++ P + K PG LT ++ L + + L N T RVP +LI Sbjct: 76 KYFSQMEIP---DIVKKNIPGELTFIMPLSDSLKENFLYLKN--TVALRVPKDKYMQLIL 130 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 PLA PSAN SG I + + L+ + LII+ GI + + ST+ N C + Sbjct: 131 NNTKPLAAPSANPSGAGEILD-GNKLAELYEDKADLIINAGIIENKMPSTLYN--CIEN- 186 Query: 190 RILRPGGLEI 199 +ILR G + + Sbjct: 187 KILRQGSVHL 196 >gi|309800293|ref|ZP_07694466.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus infantis SK1302] gi|308116077|gb|EFO53580.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus infantis SK1302] Length = 159 Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 49/139 (35%), Positives = 74/139 (53%), Gaps = 5/139 (3%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L+ G + +PTETVYGL + + A+ +Y++K RP L +V+ + + + P Sbjct: 9 LENGGAVVLPTETVYGLFAKALDKKAVDHVYQLKCRPRDKALNLNVASLDDILNFSRNQP 68 Query: 79 LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136 L L + F PGPLT++L+ + + +NL T FR+P T +LI +G PL Sbjct: 69 TYLQQLVESFLPGPLTIILE--ANDKVPYWVNSNLTTVGFRMPSHPVTLELIREFG-PLI 125 Query: 137 IPSANRSGQISITNVKHIL 155 PSAN SGQ S + IL Sbjct: 126 GPSANISGQSSGVTFRKIL 144 >gi|301614720|ref|XP_002936825.1| PREDICTED: uncharacterized protein ywlC-like [Xenopus (Silurana) tropicalis] Length = 243 Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 55/195 (28%), Positives = 93/195 (47%), Gaps = 9/195 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++LR LD G IPT+TVY LA ++P AI R+Y IK+RP+ P+ +S++ Sbjct: 29 TSSLRTIANILDNGGVCGIPTDTVYALAASCKHPEAINRIYSIKERPSEKPICICISNLD 88 Query: 69 MVKK-HASVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPL--STANLKTACFRVPCG 122 ++ PL L +PG ++ ++ + L + P + RVP Sbjct: 89 QLRVISPPFSPLLWRFMDLVYPGGISCIVQKGEWLKKLGVGPAYERVGTNDSIMIRVPDH 148 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 + PLAI SAN SG+ T+ ++ + + ++ ++ G S + ST+VN Sbjct: 149 TVTAHLTDMTGPLAITSANPSGESDSTHHDMVI-TRLSDKLDAVLCDGFSNELVGSTVVN 207 Query: 183 VQ--CEKKVRILRPG 195 E ++ILR G Sbjct: 208 CTKIDEGTIKILREG 222 >gi|294786662|ref|ZP_06751916.1| Sua5/YciO/YrdC/YwlC family protein [Parascardovia denticolens F0305] gi|294485495|gb|EFG33129.1| Sua5/YciO/YrdC/YwlC family protein [Parascardovia denticolens F0305] Length = 291 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 82/170 (48%), Gaps = 7/170 (4%) Query: 18 FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77 L AG + IPT+TVYG+ D R+ + R++E K RP + +D +K + Sbjct: 32 LLSAGHVVVIPTDTVYGIIADPRSQVGVGRIFEAKSRPRTKSVQILCADAPQAQKLGLIF 91 Query: 78 P-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLST---ANLKTACFRVPCGFTKKLIETYGH 133 P + L F G + LV + D ++T ++ R P G + I + Sbjct: 92 PQIYQDLLAEFPKGAVCLVCPV--KDDCQLVTTRQEKGYRSQAVRFPAGRQARAIIDFVG 149 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 P+A SANRSG S T V+ + + + +PL +DGG + + ST++++ Sbjct: 150 PVAASSANRSGDKSATTVQEAI-AELGGSVPLYLDGGATSGPVASTVISL 198 >gi|89898303|ref|YP_515413.1| translation factor SUA5 family protein [Chlamydophila felis Fe/C-56] gi|89331675|dbj|BAE81268.1| translation factor SUA5 family protein [Chlamydophila felis Fe/C-56] Length = 289 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 104/206 (50%), Gaps = 16/206 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++A ++L G IA PT+TVYGL V P A ++Y +K+R + +V+ I ++ Sbjct: 16 LQQAEDYLHKGKVIAFPTDTVYGLGVALNYPNAEEQIYALKRRDRGKSFVVYVNTIEDIE 75 Query: 72 KHA--SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGFTKKLI 128 K + ++ +L L++ F PGPLTL++D H + FR+ +KLI Sbjct: 76 KISGHNLSLSALKLSQKFLPGPLTLLVD-------HKNPRFTQEKLGFRILSLPIIEKLI 128 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 G PL SAN S + ++ KE +I G + GLESTIV+V Sbjct: 129 HITG-PLLGTSANISSFPPAITSEEVI-EDFSKEDLFVIPGKCT-YGLESTIVSVN---P 182 Query: 189 VRILRPGGLEIETLKRAISVELEYCV 214 ++I R G + ++ ++ + ++E C+ Sbjct: 183 LKIYREGIIPLQHIEEVLGEKIESCL 208 >gi|311113382|ref|YP_003984604.1| Sua5/YciO/YrdC/YwlC family protein [Rothia dentocariosa ATCC 17931] gi|310944876|gb|ADP41170.1| Sua5/YciO/YrdC/YwlC family protein [Rothia dentocariosa ATCC 17931] Length = 349 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 62/213 (29%), Positives = 103/213 (48%), Gaps = 24/213 (11%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + A+ A E L+A I IPT+TVYG+A D+ + + +L K R P + D++ Sbjct: 15 TEAVEAAREALNAHETIVIPTDTVYGIACDAFSHQGVSKLLADKGRSRTMPPPVLIFDLA 74 Query: 69 MVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANL----KTACFRVPCG- 122 + A P ++ L FWPG LT++L +P T +L T RVP Sbjct: 75 ALAGVADEIPNDVYDLGNKFWPGALTIIL------YSYPSLTWDLGETQGTVAVRVPDDK 128 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE----- 177 F KL+ +G PLA+ SAN++GQ + + L + + +++ L++D G E Sbjct: 129 FALKLLTEHG-PLAVSSANKTGQPAAAKAEEAL-NQLGEDVTLVVDDGPRPAPQEDGSVG 186 Query: 178 ----STIVNVQCEKKVRILRPGGLEIETLKRAI 206 STI++ V ++R G + +E L+ + Sbjct: 187 DSKPSTILDCTSTPYV-VVREGAITVEELREVV 218 >gi|154509271|ref|ZP_02044913.1| hypothetical protein ACTODO_01796 [Actinomyces odontolyticus ATCC 17982] gi|293189725|ref|ZP_06608441.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces odontolyticus F0309] gi|153798905|gb|EDN81325.1| hypothetical protein ACTODO_01796 [Actinomyces odontolyticus ATCC 17982] gi|292821315|gb|EFF80258.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces odontolyticus F0309] Length = 224 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 60/208 (28%), Positives = 101/208 (48%), Gaps = 12/208 (5%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP---LI 61 S+++++ R E D L + +PT+TVYG+ D+ NP A+ + K R P L+ Sbjct: 15 SLSEADLARAQRELRDGHL-LVVPTDTVYGIGADAANPEAVAAVLAAKGRGRQMPPPVLV 73 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120 V I ++ + + LA+ FWPG LTL+L + D+ T R+P Sbjct: 74 ASVDAIDLL--CVDIPEAARALARAFWPGGLTLILR--ARPDLGWDLGETGGTIGVRMPN 129 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 +L+ +G P+A+ SAN +GQ T+V+ + + +DGG ++ S+I Sbjct: 130 QAALLRLLHDFG-PMAVTSANLTGQPPATSVEQAV-GYFGTRVSAYLDGGPTQGSTASSI 187 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISV 208 V+ E R+LR G + ++ L A V Sbjct: 188 VDFAHETP-RVLRFGTISLDDLSAAAGV 214 >gi|134046516|ref|YP_001098001.1| translation factor SUA5 [Methanococcus maripaludis C5] gi|132664141|gb|ABO35787.1| translation factor SUA5 [Methanococcus maripaludis C5] Length = 205 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 58/212 (27%), Positives = 105/212 (49%), Gaps = 14/212 (6%) Query: 1 MQIMSITDSN------ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR 54 M+ I++SN + A + + G I T+T+YGL+ ++ + AI R+Y IK+R Sbjct: 1 MKTFEISESNLKNCNEEIETAKKMILGGKIILCGTDTLYGLSTNALDKKAIERIYSIKER 60 Query: 55 PAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT 114 P+ + + ++ + V + + + F PGP+T++ L DI P Sbjct: 61 DPNKPISISLGEKKQIENYVYVGETAKKIIEKFMPGPITVI---LKKKDIIP-DILGKDD 116 Query: 115 ACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174 R+P + I PL SAN SG+ + +++ + S I +++ LIID G SK Sbjct: 117 VGVRIPDNDVIRKIAIV--PLTTTSANISGKTAPISLEEV-DSVIKEKVDLIIDTGPSKY 173 Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAI 206 ++STIV V K+ ++R G + E + +++ Sbjct: 174 KVQSTIVKV-IGGKIELIREGKIPFEEILKSV 204 >gi|221194923|ref|ZP_03567979.1| Sua5/YciO/YrdC/YwlC family protein [Atopobium rimae ATCC 49626] gi|221184826|gb|EEE17217.1| Sua5/YciO/YrdC/YwlC family protein [Atopobium rimae ATCC 49626] Length = 217 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 67/200 (33%), Positives = 94/200 (47%), Gaps = 12/200 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGL--AVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 S + +A E AG + +PT++VYG+ A S NP R++ IK R L V Sbjct: 14 SAVIAQAVEVARAGGVLIVPTDSVYGIGAAAFSNNP-GHERIFTIKHRDRTQTLPWLVGK 72 Query: 67 ISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 S ++A P + L K +WPG LTLV+ T + N T R+P Sbjct: 73 KSDFDRYAKDAPAWAYRLVKAYWPGALTLVVKAADTVPDEYVLPQN-HTIALRMPASKLV 131 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSI-CKEIPLIIDGGISKIGLESTIVNV 183 ++I G PLA SAN G S + K + I C + LI+DGG + + + STIV+ Sbjct: 132 CEIINGLGVPLATTSANIHGNPSAVSEKDVEQELIDCSD--LILDGGPAPLAVASTIVD- 188 Query: 184 QCEKKVR-ILRPGGLEIETL 202 C K ILR G + E L Sbjct: 189 -CTSKTPCILREGAIPTEAL 207 >gi|153802780|ref|ZP_01957366.1| Sua5/YciO/YrdC family protein [Vibrio cholerae MZO-3] gi|124121693|gb|EAY40436.1| Sua5/YciO/YrdC family protein [Vibrio cholerae MZO-3] Length = 188 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 56/190 (29%), Positives = 90/190 (47%), Gaps = 14/190 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++A + L G IA PTE V+GL D N TA+ RL IK+RP +I + + ++ Sbjct: 7 LQQAVDALRKGCVIAYPTEGVFGLGCDPDNQTAMLRLLAIKQRPVEKGVILIAASYAQLR 66 Query: 72 KHA-----SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + + D L+ LA WP PLT V+ ++ D T RV + Sbjct: 67 PYVDETQLTADQLTQVLAS--WPAPLTWVMP--ASGDTSSWVRGQFDTVAVRVSDHPVVQ 122 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 KL +G PL SAN SGQ + + ++ + +I ++++G S S I + Sbjct: 123 KLCLAFGKPLTSTSANLSGQPACVTQQEVM-VQLGNQIAVVVEGKTSGRHGPSEIRDA-- 179 Query: 186 EKKVRILRPG 195 + +++LR G Sbjct: 180 -RSLQVLRQG 188 >gi|46198747|ref|YP_004414.1| sua5 protein [Thermus thermophilus HB27] gi|55980762|ref|YP_144059.1| hypothetical protein TTHA0793 [Thermus thermophilus HB8] gi|46196370|gb|AAS80787.1| sua5 protein [Thermus thermophilus HB27] gi|55772175|dbj|BAD70616.1| conserved hypothetical protein [Thermus thermophilus HB8] Length = 195 Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 58/203 (28%), Positives = 94/203 (46%), Gaps = 17/203 (8%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 M AL KA E L G +A PT+TV+G+ + A +R+YE+K RP PL Sbjct: 1 MERVYQEALAKAAETLKGGGLVAFPTDTVWGVLALMEDEAACKRIYEVKGRPEDKPLQVL 60 Query: 64 VSDISMVKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 V+D+ + + PL L LA+ FWPG LT+V + I P + + + R+P Sbjct: 61 VADLESALELVDLGPLEGKFLRLAEAFWPGGLTVV---VPGKAIPPWISKD-GSVGLRMP 116 Query: 121 C-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 ++L+ G A S N+SG+ + + ++ P GL S+ Sbjct: 117 DHALLRELLRRVGGHAAATSLNKSGEPPVRTEAEARTFAVDFVFP------GEAGGLASS 170 Query: 180 IVNVQCEKKVRILRPGGLEIETL 202 +V+++ + +LR G + E L Sbjct: 171 VVDLRTGE---VLREGAIPKEAL 190 >gi|281349712|gb|EFB25296.1| hypothetical protein PANDA_013165 [Ailuropoda melanoleuca] Length = 187 Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 55/174 (31%), Positives = 86/174 (49%), Gaps = 16/174 (9%) Query: 31 TVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPG 90 T+YGLA + A+ +Y +K R PL + ++ V ++ V + L K PG Sbjct: 1 TLYGLACSASCSEALGAVYRLKGRSEAKPLAVCLGRVADVYRYCHVR-VPEGLLKDLLPG 59 Query: 91 PLTLVLDLLS--TTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQIS 147 P+TLVL+ D++P + R+P F + L++ +G PLA+ SAN S Q S Sbjct: 60 PVTLVLERSEELNKDLNPFT----PLVGIRIPDHAFIQDLVQVFGGPLALTSANLSSQAS 115 Query: 148 ITNVKHILSSSICKEIPLIIDGGISKIG------LESTIVNVQCEKKVRILRPG 195 NV+ + ++ L+IDGG G L ST+V++ K I+RPG Sbjct: 116 SLNVEEF--QDLWPQLSLVIDGGPIGDGQSPEYRLGSTVVDLSVPGKFGIIRPG 167 >gi|327284453|ref|XP_003226952.1| PREDICTED: hypothetical protein LOC100555097 [Anolis carolinensis] Length = 499 Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 93/189 (49%), Gaps = 20/189 (10%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 +A+PT+TVYG+A + + A+ LY +K R PL + D+ ++ + V L Sbjct: 96 VALPTDTVYGVACLAEDSRALEALYRLKGRDPGKPLAVCLPDLDVLHRFCKVQVPEGLLQ 155 Query: 85 KLFWPGPLTLVLDLLSTT--DIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSAN 141 L PGP+TLVL+ D++P + R+P F ++L PLA+ SAN Sbjct: 156 DLL-PGPVTLVLERSEALNPDLNPFT----PLVGVRIPNHWFARELARICAAPLALTSAN 210 Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGG--------ISKIGLESTIVNVQCEKKVRILR 193 S + S +V + + L++DGG S++G ST+V++ K R++R Sbjct: 211 PSHKGSTLDVTEF--QELWPHLSLVVDGGPLGDTHSPESRLG--STVVDLSVPGKFRVIR 266 Query: 194 PGGLEIETL 202 PG +TL Sbjct: 267 PGCALSQTL 275 >gi|332522804|ref|ZP_08399056.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus porcinus str. Jelinkova 176] gi|332314068|gb|EGJ27053.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus porcinus str. Jelinkova 176] Length = 197 Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 60/199 (30%), Positives = 97/199 (48%), Gaps = 10/199 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + K ++ G + +PTETVYGL + + A+ +Y +K+RP + +V+D + Sbjct: 1 MDKLKSIIENGGALVLPTETVYGLFAKAMDEQAVNMVYTLKQRPREKAMNLNVADYQAIL 60 Query: 72 KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK-TACFRVPCG-FTKKLI 128 ++ P L L F PGPLT++ L D P + K T FR+P T++LI Sbjct: 61 DYSKDQPTYLKELYDAFLPGPLTII---LKANDRVPFWINSGKDTVGFRLPKHPVTEQLI 117 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 G PL PSAN SG+ S I+ + + D ++ G +STI+++ K Sbjct: 118 RIAG-PLIGPSANLSGRQSGCQYAEIIKAFHNRVEGYEDDQSLT--GQDSTIIDLSG-PK 173 Query: 189 VRILRPGGLEIETLKRAIS 207 +ILR G + ++ IS Sbjct: 174 AKILRQGSISAADIQTKIS 192 >gi|39938501|ref|NP_950267.1| translation factor [Onion yellows phytoplasma OY-M] gi|39721610|dbj|BAD04100.1| translation factor [Onion yellows phytoplasma OY-M] Length = 185 Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 55/176 (31%), Positives = 80/176 (45%), Gaps = 6/176 (3%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 I PT+TVYG+ + + +Y+IKKRP ++ + + KK P SL LA Sbjct: 7 IIFPTDTVYGMGAKLYDKKGLNCIYQIKKRPLNKSIVVLCASLQQAKKLVQFSPQSLKLA 66 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSG 144 FWPGPLTL+L T + S KT R+P I PL S N+S Sbjct: 67 LHFWPGPLTLILP----TTLKYFSKTKAKTLGIRIPNHPLALEILKKNGPLKTTSVNQSN 122 Query: 145 QISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200 + + + I + K + LI + + STIV++ + V ILR G + E Sbjct: 123 HPPLNDYQTIFNIYYNK-VALIYQNYHPILKISSTIVDLTTFQPV-ILRQGTITQE 176 >gi|296160300|ref|ZP_06843118.1| SUA5/yciO/yrdC domain protein [Burkholderia sp. Ch1-1] gi|295889511|gb|EFG69311.1| SUA5/yciO/yrdC domain protein [Burkholderia sp. Ch1-1] Length = 203 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 61/197 (30%), Positives = 87/197 (44%), Gaps = 17/197 (8%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + A L G + +PT+T Y A D N A RLYEIKKR PL VS + Sbjct: 4 IEHAATILKNGGVLMVPTDTNYAFAADPWNVEACARLYEIKKRDVKKPLTLFVSRPEDLW 63 Query: 72 KHASVDPLSLH----LAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCGFTKK 126 +A V L WPGPL VL HP L ++ C R P Sbjct: 64 VYAEVPDAQTEAVNSLMARHWPGPLNFVLKKSPAAPNHPYLKEDSISVVCNRNPV--LNG 121 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID------GGISKIGLESTI 180 LI +G PLA+ SAN SG + + + L+S + P +D G + + STI Sbjct: 122 LINLFGRPLAMTSANVSGVEHDSLIDYELAS---RTFPDAVDYIVPPGGMVPQTTRSSTI 178 Query: 181 VNVQCEKKVRILRPGGL 197 +++ + +++LR G + Sbjct: 179 ISL-LDGTLKVLRQGDV 194 >gi|118580209|ref|YP_901459.1| Sua5/YciO/YrdC/YwlC family protein [Pelobacter propionicus DSM 2379] gi|118502919|gb|ABK99401.1| translation factor SUA5 [Pelobacter propionicus DSM 2379] Length = 202 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 74/159 (46%), Gaps = 4/159 (2%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 + + L G IA PT+T YG+ N I R+Y +K+R P ++S V + Sbjct: 17 RVVDCLRNGGIIAYPTDTTYGIGCSIFNKKGIERIYRMKQREHKKPFSFICPNLSEVARF 76 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132 A V + + K + PGP T VL+ +T D+ L KT R+P ++++ G Sbjct: 77 ARVSNTAFKILKRYLPGPYTFVLE--ATRDVPDLLLTRQKTVGIRIPDNRICLEIVQMLG 134 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171 P+ SAN SG N I ++ +++DGGI Sbjct: 135 SPIVTTSANLSGDEPTGNPGFI-DEIFGHQLDIVVDGGI 172 >gi|183600716|ref|ZP_02962209.1| hypothetical protein PROSTU_04312 [Providencia stuartii ATCC 25827] gi|188019696|gb|EDU57736.1| hypothetical protein PROSTU_04312 [Providencia stuartii ATCC 25827] Length = 189 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 51/155 (32%), Positives = 70/155 (45%), Gaps = 8/155 (5%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L+ G IA PTE V+GL D + A+ +L E+K+RP LI + +K + Sbjct: 16 LNKGEVIAYPTEAVFGLGCDPDSEQAVNKLLELKQRPWEKGLILIADNYEQLKDYVDDSQ 75 Query: 79 LSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHP 134 L+ + WPGP+T V+ S+T T T RV G K+L YG P Sbjct: 76 LTDEQKQTMFASWPGPVTWVIPAKSST--PKWLTGRFDTLAVRVTDHGLVKELCREYGKP 133 Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169 L SAN SGQ +L IP ++DG Sbjct: 134 LVSTSANLSGQEPCRTTNEVL-EQFKGSIP-VLDG 166 >gi|325831973|ref|ZP_08165070.1| Sua5/YciO/YrdC/YwlC family protein [Eggerthella sp. HGA1] gi|325486294|gb|EGC88746.1| Sua5/YciO/YrdC/YwlC family protein [Eggerthella sp. HGA1] Length = 202 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 51/140 (36%), Positives = 70/140 (50%), Gaps = 8/140 (5%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP---LICHVS 65 S++ R+A L G + PTETVYGL V + LY++K+R P L+ V Sbjct: 5 SSSKREAVAALKRGEAVIFPTETVYGLGVSVEAAASPEALYDLKERDRGKPVSWLVGGVD 64 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125 D+ H V L+ LA+ +WPGPLTL+++ S A + R+P T Sbjct: 65 DLDRYGAH--VPDLARRLARAYWPGPLTLIVEAGDAVPAAFRSAAG--SIGLRMPDNDTA 120 Query: 126 -KLIETYGHPLAIPSANRSG 144 +LIE G PLA SAN SG Sbjct: 121 LELIEAVGCPLATTSANISG 140 >gi|302338452|ref|YP_003803658.1| Sua5/YciO/YrdC/YwlC family protein [Spirochaeta smaragdinae DSM 11293] gi|301635637|gb|ADK81064.1| Sua5/YciO/YrdC/YwlC family protein [Spirochaeta smaragdinae DSM 11293] Length = 191 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 58/201 (28%), Positives = 98/201 (48%), Gaps = 19/201 (9%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 +S D N L E L G P+ +P +T+YG+ P + +++ +K R NP + Sbjct: 5 ISKDDPNLLDVLTEVLFRGEPVIMPCDTMYGIV--GIVPASEKKIRALKDRLETNPFL-Q 61 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 + + S++ + + L + +WPG LTL+LD + T R+P Sbjct: 62 LINFSLLPRVVR-GKVPARLMR-YWPGALTLILDAVEG-----------GTVGVRIPDDE 108 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 ++ IE G PL S N+SGQ +I ++ I+ + + LI+D GI G STI+N Sbjct: 109 LLQRCIERVGMPLYSTSVNKSGQPNINAIEEIV-ALFGSRVELIVDAGIMGQGQASTIIN 167 Query: 183 VQCEKKVRILRPGGLEIETLK 203 + E V +LR G + ++ +K Sbjct: 168 ARSEPYV-LLRQGAVCVDGIK 187 >gi|308233417|ref|ZP_07664154.1| protein-(glutamine-N5) methyltransferase, release factor-specific [Atopobium vaginae DSM 15829] gi|328944391|ref|ZP_08241853.1| protein-(glutamine-N5) methyltransferase [Atopobium vaginae DSM 15829] gi|327490975|gb|EGF22752.1| protein-(glutamine-N5) methyltransferase [Atopobium vaginae DSM 15829] Length = 526 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 65/210 (30%), Positives = 101/210 (48%), Gaps = 16/210 (7%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-VDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 D + KA + L I PT++VYG+ V + A +R +EIK R L + D Sbjct: 324 DPQIIDKAVDVLAHEGVIITPTDSVYGIGCVALPHNAAHKRTFEIKHRDLRQTLPWLIGD 383 Query: 67 ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPLSTANLKTACFRVP-C 121 S + ++A V + LA FWPG LTLV+ D + +H A+ KT R+P Sbjct: 384 ESDLMRYAVDVPAWAQKLAHTFWPGALTLVVKACDDVPQEYVH----ADNKTIALRLPDS 439 Query: 122 GFTKKLIETYGHPLAIPSANRSG-QISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 + L PLAI SAN G +I+ L + E+ L++D G + + + STI Sbjct: 440 NVVRALARKLSCPLAITSANTHGADAAISGAT--LEDRLIDEVDLVLDAGSAPLAVASTI 497 Query: 181 VNVQCEKKV-RILRPGGLEIETLKRAISVE 209 V+ C + +ILR G ++ + A+S + Sbjct: 498 VD--CTQSTPKILRIGAIDPHDIMEALSAQ 525 >gi|317488503|ref|ZP_07947054.1| Sua5/YciO/YrdC/YwlC family protein [Eggerthella sp. 1_3_56FAA] gi|316912435|gb|EFV33993.1| Sua5/YciO/YrdC/YwlC family protein [Eggerthella sp. 1_3_56FAA] Length = 202 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 51/140 (36%), Positives = 70/140 (50%), Gaps = 8/140 (5%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP---LICHVS 65 S++ R+A L G + PTETVYGL V + LY++K+R P L+ V Sbjct: 5 SSSKREAVAALKRGEAVIFPTETVYGLGVSVEAAASPEALYDLKERDRGKPVSWLVGGVD 64 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125 D+ H V L+ LA+ +WPGPLTL+++ S A + R+P T Sbjct: 65 DLDRYGAH--VPDLARRLARAYWPGPLTLIVEAGDAVPAAFRSAAG--SIGLRMPDNDTG 120 Query: 126 -KLIETYGHPLAIPSANRSG 144 +LIE G PLA SAN SG Sbjct: 121 LELIEAVGCPLATTSANISG 140 >gi|307186184|gb|EFN71890.1| YrdC domain-containing protein, mitochondrial [Camponotus floridanus] Length = 248 Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 47/134 (35%), Positives = 71/134 (52%), Gaps = 4/134 (2%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A + L G IAIPT+T+YGLA + NP A++RLYEIK+R PL +S++ + Sbjct: 41 AAQLLQQGKIIAIPTDTIYGLAGVAVNPLAVQRLYEIKRRDGSKPLAICLSNVKEIGTWG 100 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133 +D + + + PGP T+ L T+ + +T RVP F + + + G Sbjct: 101 VLDDVPSGMLECLLPGPCTICLR--RTSALPKSFNPGQETVGIRVPDNKFVRSVAKIVG- 157 Query: 134 PLAIPSANRSGQIS 147 PLA+ SAN S + S Sbjct: 158 PLALTSANISSEPS 171 >gi|294138840|ref|YP_003554818.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella violacea DSS12] gi|293325309|dbj|BAJ00040.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella violacea DSS12] Length = 185 Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 83/182 (45%), Gaps = 15/182 (8%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 E ++ G IA PTE VYGL D N AI +L +K+RP LI SD S + + Sbjct: 11 EVIENGGVIAYPTEAVYGLGCDPDNDVAIEKLLALKQRPWQKGLILVASDYSQIAPYLDD 70 Query: 77 DPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132 L+ L A WPGP T ++ + S DI L N + RV + + G Sbjct: 71 TQLTEKQLAFAFSKWPGPFTFIMPIRS--DISKLLCGNFNSLAVRVSAHPGIQAICNKLG 128 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS-KIGLE---STIVNVQCEKK 188 PL SAN +GQ +V + + +I G ++ K+G E STI++ K Sbjct: 129 KPLVSTSANITGQQPAMSVDE-----VTMQFEGVIAGVVTGKLGCEANPSTIIDALSGKV 183 Query: 189 VR 190 +R Sbjct: 184 LR 185 >gi|322799894|gb|EFZ21035.1| hypothetical protein SINV_05462 [Solenopsis invicta] Length = 239 Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 47/136 (34%), Positives = 69/136 (50%), Gaps = 2/136 (1%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A E L G IA+PT+TVYGLA + + AI+RLYEIK+R PL +S++ V Sbjct: 36 AAEMLRQGKVIALPTDTVYGLACLATDTCAIQRLYEIKRRDEGKPLAICLSNVKEVGTWG 95 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHP 134 +D + ++ + PGP T+ L T ++ + T RVP + + P Sbjct: 96 ILDDIPANMLEQLLPGPYTICLR--RTPALNRALNPGVDTVGIRVPDNKFIRSVAQIAGP 153 Query: 135 LAIPSANRSGQISITN 150 LA+ SAN S + S N Sbjct: 154 LALTSANVSSEPSSLN 169 >gi|262191286|ref|ZP_06049480.1| YrdC family protein [Vibrio cholerae CT 5369-93] gi|262032824|gb|EEY51368.1| YrdC family protein [Vibrio cholerae CT 5369-93] Length = 188 Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 56/190 (29%), Positives = 90/190 (47%), Gaps = 14/190 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++A + L G IA PTE V+GL D N TA+ RL IK+RP +I + + ++ Sbjct: 7 LQQAVDALRKGCVIAYPTEGVFGLGCDPDNQTAMLRLLAIKQRPVEKGVILIAASYAQLR 66 Query: 72 KHA-----SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + + D L+ LA WP PLT V+ ++ D T RV + Sbjct: 67 PYVDETQLTADQLTQVLAS--WPAPLTWVMP--ASGDTPSWVRGQFDTVAVRVSDHPVVQ 122 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 KL +G PL SAN SGQ + + ++ + +I ++++G S S I + Sbjct: 123 KLCLAFGKPLTSTSANLSGQRACVTQQEVM-VQLGNQIAVVVEGKTSGRHGPSEIRDA-- 179 Query: 186 EKKVRILRPG 195 + +++LR G Sbjct: 180 -RSLQVLRQG 188 >gi|323342352|ref|ZP_08082584.1| hypothetical protein HMPREF0357_10765 [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463464|gb|EFY08658.1| hypothetical protein HMPREF0357_10765 [Erysipelothrix rhusiopathiae ATCC 19414] Length = 215 Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 47/201 (23%), Positives = 96/201 (47%), Gaps = 21/201 (10%) Query: 16 CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75 + + G +AI T+TVYGLA S + + ++L + K+RP P V + ++ A Sbjct: 28 AQMIQEGGLVAIMTDTVYGLAASSADGSLYQKLKDAKERPENKPFPLMVGSLDQIESVAE 87 Query: 76 VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134 + HL K F PG +T + ++ + P + +T R+ + + +I G+P Sbjct: 88 LTDRDRHLMKTFMPGAVTFIFNIKDG--VFPF-LGDQRTIGIRMADDIWVQDIINKVGYP 144 Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI-------GLESTIVNVQCEK 187 + +PSANRSG + + ++ +DG I + G+ S++ ++ + Sbjct: 145 IWLPSANRSGFDTAISSDMVIDQ---------LDGRIEGVVLGECVGGVSSSVFDITGD- 194 Query: 188 KVRILRPGGLEIETLKRAISV 208 +++ LR G + +E + + + + Sbjct: 195 EIKCLRQGVITLEEINKEVGL 215 >gi|327482964|gb|AEA77371.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae LMA3894-4] Length = 185 Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 56/190 (29%), Positives = 90/190 (47%), Gaps = 14/190 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++A + L G IA PTE V+GL D N TA+ RL IK+RP +I + + ++ Sbjct: 4 LQQAVDALRKGCVIAYPTEGVFGLGCDPDNQTAMLRLLAIKQRPVEKGVILIAASYAQLR 63 Query: 72 KHA-----SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + + D L+ LA WP PLT V+ ++ D T RV + Sbjct: 64 PYVDETQLTADQLTQVLAS--WPAPLTWVMP--ASGDTPSWVRGQFDTVAVRVSDHPVVQ 119 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 KL +G PL SAN SGQ + + ++ + +I ++++G S S I + Sbjct: 120 KLCLAFGKPLTSTSANLSGQRACVTQQEVM-VQLGNQIAVVVEGKTSGRHGPSEIRDA-- 176 Query: 186 EKKVRILRPG 195 + +++LR G Sbjct: 177 -RSLQVLRQG 185 >gi|147919401|ref|YP_686860.1| YrdC family translation factor [uncultured methanogenic archaeon RC-I] gi|110622256|emb|CAJ37534.1| putative translation factor (YrdC family) [uncultured methanogenic archaeon RC-I] Length = 192 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 57/199 (28%), Positives = 97/199 (48%), Gaps = 28/199 (14%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A + + G IA PTETVYG+ + + AI R++++K+RP PL VS I M+++ A Sbjct: 10 AADIILKGGVIAYPTETVYGIGALATDVKAISRVFKVKRRPESMPLSIAVSSIEMLQEVA 69 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCGFTKKLIETYGH 133 + + + F PGP+T++ L + P S TA R P H Sbjct: 70 EI--VHPDFIEKFLPGPVTVI---LRKKPVLPDSLTAGSDYVGIRFP-----------DH 113 Query: 134 PLAIPSANRSGQISITNV------KHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 P+A+ R+G I T+ + + + E+ +++GG +K STIV++ + Sbjct: 114 PVALDLIRRTGPIVSTSANLHGEPDPVTADEVTVEVDYLLEGGRAKYAGSSTIVDL---R 170 Query: 188 KVRILRPGGL--EIETLKR 204 + ++LR G + E+E R Sbjct: 171 EYKVLRKGAMYDEVEEYMR 189 >gi|85057289|ref|YP_456205.1| translation factor SUA5 protein [Aster yellows witches'-broom phytoplasma AYWB] gi|84789394|gb|ABC65126.1| translation factor SUA5 protein [Aster yellows witches'-broom phytoplasma AYWB] Length = 196 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 85/183 (46%), Gaps = 8/183 (4%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 I PT+TVYG+ + + +Y+IKKRP ++ S + KK P +L LA Sbjct: 7 IIFPTDTVYGMGAKLYDKKGLNYIYQIKKRPLNKSIVVLCSSLQQAKKLVQFSPQNLKLA 66 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRS 143 FWPGPLT VL S S KT R+P T ++++ G PL S N+S Sbjct: 67 LHFWPGPLTFVLPTTSKY----FSKTKEKTLGVRIPNHPLTLEILKKNG-PLKTTSVNQS 121 Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203 + + + I + K + LI + + STIV++ + V ILR G + E + Sbjct: 122 NHPPLNDYQTIFNIYHNK-VALIYKNYHPILKISSTIVDLTTFQPV-ILRQGTITQEEIS 179 Query: 204 RAI 206 I Sbjct: 180 SQI 182 >gi|153826414|ref|ZP_01979081.1| Sua5/YciO/YrdC family protein [Vibrio cholerae MZO-2] gi|149739800|gb|EDM53995.1| Sua5/YciO/YrdC family protein [Vibrio cholerae MZO-2] Length = 188 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 56/190 (29%), Positives = 90/190 (47%), Gaps = 14/190 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++A + L G IA PTE V+GL D N TA++RL IK+RP +I + + ++ Sbjct: 7 LQQAVDALRKGCVIAYPTEGVFGLGCDPDNQTAMQRLLAIKQRPVEKGVILIAASYAQLR 66 Query: 72 KHASVDPLSLHLAKLF-----WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + VD L +L WP PLT V+ ++ D T RV + Sbjct: 67 PY--VDETQLTAEQLTQVLASWPAPLTWVMP--ASGDTPSWIRGQFDTVAVRVSDHPVVQ 122 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 KL +G PL SAN SGQ + + ++ + +I ++++G S S I + Sbjct: 123 KLCLAFGKPLTSTSANLSGQPACVTRQEVM-VQLGNQIAVVVEGKTSGRHGPSEIRDA-- 179 Query: 186 EKKVRILRPG 195 + +++LR G Sbjct: 180 -RSLQVLRQG 188 >gi|84494536|ref|ZP_00993655.1| Sua5/YciO/YrdC/YwlC [Janibacter sp. HTCC2649] gi|84384029|gb|EAP99909.1| Sua5/YciO/YrdC/YwlC [Janibacter sp. HTCC2649] Length = 260 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 59/209 (28%), Positives = 101/209 (48%), Gaps = 7/209 (3%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + + KA + G + +PT+T+YG+ D+ +P A++RL + K R P V ++ Sbjct: 15 DGIAKATAGVRQGDLVVLPTDTLYGIGADAFSPDAVQRLLDAKGRGREMPPPVLVPEVRT 74 Query: 70 VKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-KL 127 V A+ P + L + +WPGPLTLV + T T R+P +L Sbjct: 75 VDGLATDVPAYARALIERYWPGPLTLVFKAQPSLMWDLGDTGG--TVAVRMPDNEVALEL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ G P+A+ SANR+GQ + + ++ + + +DGG GL STIV+ Sbjct: 133 LKEVG-PMAVSSANRTGQPASRTIIDA-ATQLGASVEFYLDGGPVTGGLASTIVDC-THP 189 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDE 216 + ILR G ++ + + + LE +E Sbjct: 190 EPTILRRGAIDADEIMALANQHLELPPEE 218 >gi|332671311|ref|YP_004454319.1| Sua5/YciO/YrdC/YwlC family protein [Cellulomonas fimi ATCC 484] gi|332340349|gb|AEE46932.1| Sua5/YciO/YrdC/YwlC family protein [Cellulomonas fimi ATCC 484] Length = 222 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 54/193 (27%), Positives = 93/193 (48%), Gaps = 5/193 (2%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 A+ +A + G + +PT+TVYG+ D+ P A++ L + K R P + D+ + Sbjct: 17 AIDEAVAAVSRGALVVLPTDTVYGIGADAFTPPAVQALLDAKGRGRQMPPPVLIPDVRTL 76 Query: 71 KKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129 A+ P + LA+ FWPG LTL++ + L N T RVP T + Sbjct: 77 DGLATDVPDAARALAEAFWPGGLTLIVHAQPSLAWD-LGETN-GTVALRVPDHPTALALL 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+A+ SANR+G + + + + + + +D G + + STIV+ + + Sbjct: 135 RRTGPMAVSSANRTGSPAAVTAQDA-HAQLGDSVAVYLDAGDAPGQVASTIVDATGD-VL 192 Query: 190 RILRPGGLEIETL 202 R++R G L +E L Sbjct: 193 RLVRAGALTLEQL 205 >gi|255326263|ref|ZP_05367349.1| translation factor SUA5 [Rothia mucilaginosa ATCC 25296] gi|255296717|gb|EET76048.1| translation factor SUA5 [Rothia mucilaginosa ATCC 25296] Length = 395 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 54/175 (30%), Positives = 88/175 (50%), Gaps = 14/175 (8%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 A+ A E L A I +PT+TVYG+A D+ + + +L K R P + D++ Sbjct: 16 EAIEAAREALKAHDTIVMPTDTVYGIAADAFSHQGVAKLLADKGRDRTMPPPVLIFDLAA 75 Query: 70 VKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANL----KTACFRVPCG-F 123 + P ++ L FWPG LT++L +P + +L T RVP F Sbjct: 76 LAGVVDDVPDDIYDLGGRFWPGALTMIL------HAYPSLSWDLGETRGTVAVRVPDDEF 129 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 KL+ +G PLA+ SAN++GQ + + + + S+ +++ ++IDGG LES Sbjct: 130 ALKLLTEHG-PLAVSSANKTGQEAALDAQTAM-DSLGEDVAVVIDGGARPKPLES 182 >gi|240169513|ref|ZP_04748172.1| hypothetical protein MkanA1_09381 [Mycobacterium kansasii ATCC 12478] Length = 219 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 61/204 (29%), Positives = 99/204 (48%), Gaps = 7/204 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S+ + A L AG + +PT+TVYG+A D+ + +A+ L K R P+ V Sbjct: 16 SSGITAAVAALKAGRLVVMPTDTVYGVAADAFDRSAVDALLAAKGRGRDMPVGVLVGSWH 75 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 ++ SV P + L + FWPG L+LV+ + + + L A T R+P + Sbjct: 76 TIEGLVYSVPPGARELIRAFWPGALSLVV-VQAPSLQWDLGDAR-GTVMLRMPLHPVAIE 133 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+ G PLA+ SAN SGQ + + + + + +DGG + STIV++ Sbjct: 134 LLREVG-PLAVSSANVSGQPAAVDAGEA-RRQLGDRVDVYLDGGPAAQQAASTIVDLTGA 191 Query: 187 KKVRILRPGGLEIETLKRAISVEL 210 RILRPG + E + + V++ Sbjct: 192 TP-RILRPGPVSAERIAEVLGVDV 214 >gi|296128917|ref|YP_003636167.1| Sua5/YciO/YrdC/YwlC family protein [Cellulomonas flavigena DSM 20109] gi|296020732|gb|ADG73968.1| Sua5/YciO/YrdC/YwlC family protein [Cellulomonas flavigena DSM 20109] Length = 236 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 57/210 (27%), Positives = 99/210 (47%), Gaps = 17/210 (8%) Query: 2 QIMSITD----SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 +I +TD A+ +A + G + +PT+TVYG+ D+ + A++ L + K R Sbjct: 5 RIKDVTDPATWGPAVDEAVHAVGRGELVVLPTDTVYGIGADAFDARAVQALLDAKGRGRQ 64 Query: 58 NPLICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANL---- 112 P + D+ + A+ P ++ LA+ FWPG LT++L P +L Sbjct: 65 MPPPVLIPDVRTLDGLATDVPDAVRALAETFWPGGLTVIL------RAQPSLAWDLGETH 118 Query: 113 KTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172 T R+P + PLA+ SANR+G+ + + + +DGG + Sbjct: 119 GTVALRMPDHPAALALLRRTGPLAVSSANRTGR-PAATTAAEAHEQLGDAVAVYLDGGTA 177 Query: 173 KIGLESTIVNVQCEKKVRILRPGGLEIETL 202 G+ STIV+ + +R++R G L++ TL Sbjct: 178 PGGVASTIVDATGD-ALRVVRLGALDLATL 206 >gi|295099926|emb|CBK89015.1| Sua5/YciO/YrdC/YwlC family protein [Eubacterium cylindroides T2-87] Length = 203 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 64/183 (34%), Positives = 95/183 (51%), Gaps = 15/183 (8%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 IAIPT+TVYG+ V + A+ L K RP P+ VS + ++ A +D + +A Sbjct: 22 IAIPTDTVYGVGVMYGDLDALHNLKHAKHRPETKPIPMMVSKLEQLEGIAIIDERTKVIA 81 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANRS 143 K F PG LTLVL + D L+T R+P F LI+ PL + SAN+S Sbjct: 82 KHFLPGALTLVLPVDPRLDKS--YNNGLETIAIRIPDEEFVLSLIDELDTPLLVTSANQS 139 Query: 144 GQISITNVKHILSSSICKEIPLIIDG---GISKIGLESTIVNVQCEKK-VRILRPGGLEI 199 G + T +K+ + +++P IDG G + STIV+ C K+ ++ILR G + + Sbjct: 140 G--APTALKY---EDVLEQLP-NIDGIVLGKCRALQASTIVD--CTKEDLKILREGPISL 191 Query: 200 ETL 202 E L Sbjct: 192 EEL 194 >gi|256827626|ref|YP_003151585.1| Sua5/YciO/YrdC/YwlC family protein [Cryptobacterium curtum DSM 15641] gi|256583769|gb|ACU94903.1| Sua5/YciO/YrdC/YwlC family protein [Cryptobacterium curtum DSM 15641] Length = 220 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 54/194 (27%), Positives = 88/194 (45%), Gaps = 5/194 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L + L AG P+ PT+TVYG+ V + + +Y+ K+R P+ V I + Sbjct: 26 LERTVAALRAGYPVIFPTDTVYGIGVSVDAAESPKAIYQAKERDLSKPVAWLVDSIEALD 85 Query: 72 KHASVDPLSLHLAKLF-WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIE 129 + P + H WPGPLTLV+ ++ + T+ T R+P ++LI Sbjct: 86 VYGDAVPAAAHALAHAQWPGPLTLVVK--ASERVPAAFTSTAGTIGLRMPNHAIARELIR 143 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G P+A SAN S S + I + K + ++ D G+ ST+V+ + Sbjct: 144 RLGCPIATSSANISAHPSTAYAQGIDPALSDKVVAVLADDSQGASGISSTVVDC-TSSPL 202 Query: 190 RILRPGGLEIETLK 203 RILR G + ++ Sbjct: 203 RILREGSISAADVR 216 >gi|153830131|ref|ZP_01982798.1| Sua5/YciO/YrdC family protein [Vibrio cholerae 623-39] gi|148874395|gb|EDL72530.1| Sua5/YciO/YrdC family protein [Vibrio cholerae 623-39] Length = 188 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 56/190 (29%), Positives = 90/190 (47%), Gaps = 14/190 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++A + L G IA PTE V+GL D N TA+ RL IK+RP +I + + ++ Sbjct: 7 LQQAVDALRKGCVIAYPTEGVFGLGCDPDNQTAMLRLLAIKQRPVEKGVILIAASYAQLR 66 Query: 72 KHA-----SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + + D L+ LA WP PLT V+ ++ D T RV + Sbjct: 67 PYVDETQLTADQLTQVLAS--WPAPLTWVMP--ASGDTPSWVRGQFDTVAVRVSDHPVVQ 122 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 KL +G PL SAN SGQ + + ++ + +I ++++G S S I + Sbjct: 123 KLCLAFGKPLTSTSANLSGQPACVTQQEVM-VQLGNQIAVVVEGKTSGRHGPSEIRDA-- 179 Query: 186 EKKVRILRPG 195 + +++LR G Sbjct: 180 -RSLQVLRQG 188 >gi|226227089|ref|YP_002761195.1| hypothetical protein GAU_1683 [Gemmatimonas aurantiaca T-27] gi|226090280|dbj|BAH38725.1| hypothetical protein [Gemmatimonas aurantiaca T-27] Length = 224 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 62/209 (29%), Positives = 89/209 (42%), Gaps = 22/209 (10%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGL--AVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +LR L AG +A PTETVYG AVD ++ L +K RP P + + D Sbjct: 20 SLRDTILHLGAGRVLAYPTETVYGFGTAVDH---DSVEALVRMKGRPPGKPFLLLIGDPG 76 Query: 69 MVKKHASVDPLSLHL-------AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 V + L LHL A FWPGPLTLVL A P Sbjct: 77 QVAR------LDLHLPTYAAQLAARFWPGPLTLVLRGGDQRVPARARGPEGGVAVRWTPH 130 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILS---SSICKEIPLIIDGGISKIGLES 178 ++L+ YG P+ SANR I++ + I + ++DGG S Sbjct: 131 PGLQRLLTAYGEPITSTSANRPRVPPAMTASEIVTQWPAEIHRGTLRVLDGGRLAPSDSS 190 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAIS 207 T+V+ ++ R++RPG L L+ ++ Sbjct: 191 TVVDC-TGRRARVIRPGALPAPLLRTCVA 218 >gi|170697613|ref|ZP_02888702.1| SUA5 domain protein [Burkholderia ambifaria IOP40-10] gi|170137500|gb|EDT05739.1| SUA5 domain protein [Burkholderia ambifaria IOP40-10] Length = 241 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 60/205 (29%), Positives = 97/205 (47%), Gaps = 30/205 (14%) Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194 +A PSANR G +S T +H+ + ++DGG S++G+ESTI+++ +LRP Sbjct: 42 VAAPSANRFGHVSPTTAQHVRDE--FGDTVHVLDGGASEVGIESTILDL-SRGFPALLRP 98 Query: 195 GGLE----IETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALI 250 G + + L RA L D T+ P++ G LK+HYAPR+ + L P +AL Sbjct: 99 GHVTPRQIADVLGRA--PRLPDGGDATA-PRASGTLKAHYAPRTPLAL-----MPFDALE 150 Query: 251 RFGNVPIKNIENAIISLNLSKTGKLKEA---------------AFNLFNYMKIADDSGAS 295 + E + S+ G+ +A A +L+ ++ D + + Sbjct: 151 PLLAAAQTDGERVALVARASRAGRWAQADGVHFVAAPEDPQAYARDLYGMLRALDRAQVA 210 Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320 I +P IA+N+RL RAAA Sbjct: 211 RILVEKLPETVEWIAVNDRLGRAAA 235 >gi|68536429|ref|YP_251134.1| hypothetical protein jk1344 [Corynebacterium jeikeium K411] gi|68264028|emb|CAI37516.1| conserved hypothetical protein [Corynebacterium jeikeium K411] Length = 219 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 AL A + G + +PT+TVYG+ D+ + A+ L K R P+ V + + Sbjct: 16 ALDTAANAVKGGRLVVLPTDTVYGIGCDAFDNEAVAALLRAKGRGPDMPVPVLVPSWTTI 75 Query: 71 KKHASVDPLSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLK-TACFRVPCG-FTK 125 + V + ++ KL FWPG L++V+ + P + + + T R+P Sbjct: 76 Q--GLVREYTYNMRKLVEAFWPGGLSMVVHQAPSL---PWNLGDTRGTVMLRMPNQPIAL 130 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +L+E G P+A+ SAN SGQ TNV+ + + ++ IDGG + G+ STIV++ Sbjct: 131 ELLERTG-PMAVSSANISGQPPATNVQ-MAEDQLGADVTTYIDGGEAHHGVASTIVDLSS 188 Query: 186 EKKVRILRPGGLEIETLKRAISV 208 + RILR G E + + + Sbjct: 189 GRP-RILREGAATTERVAEVLGM 210 >gi|94984865|ref|YP_604229.1| Sua5/YciO/YrdC/YwlC [Deinococcus geothermalis DSM 11300] gi|94555146|gb|ABF45060.1| Sua5/YciO/YrdC/YwlC [Deinococcus geothermalis DSM 11300] Length = 208 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 63/198 (31%), Positives = 90/198 (45%), Gaps = 15/198 (7%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + A+ +A E + AG + PTETV+GLA A RLY +K R P+ D Sbjct: 12 AQAVARAAERVTAGGVVGYPTETVWGLAARLE---ASERLYALKGREPDKPVQVSCLDEE 68 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTT--DIHPLSTANLKTACFRVPCGFTKK 126 ++ LA L WPGPLTLVL S D+ P L+ V Sbjct: 69 TARRLTEAGAAFDALAGL-WPGPLTLVLPASSACPPDLAPGGWVGLRVPDHPV----ALA 123 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII-DGGISKIGLESTIVNVQC 185 L+ G LA S N SGQ + + + + PL++ DGG GL ST+V V Sbjct: 124 LLRACGGLLATTSLNPSGQPAARTFEEAQAYGLA---PLLLPDGGFPAQGLASTVVRVVG 180 Query: 186 EKKVRILRPGGLEIETLK 203 + ++ +LR G L ++ L+ Sbjct: 181 D-ELEVLREGALPVQLLR 197 >gi|261213222|ref|ZP_05927504.1| YrdC family protein [Vibrio sp. RC341] gi|260837496|gb|EEX64199.1| YrdC family protein [Vibrio sp. RC341] Length = 185 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 54/188 (28%), Positives = 90/188 (47%), Gaps = 10/188 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++A + L G IA PTE V+GL D N A+ RL IK+RP +I ++ ++ Sbjct: 4 LQQAVDVLQRGGVIAYPTEGVFGLGCDPDNQAAMLRLLAIKQRPIEKGVILIAANYEQLR 63 Query: 72 KHASVDPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + D L+ L ++ WP PLT V+ ++ D T RV ++L Sbjct: 64 PYIDEDQLTEQQLLQVLASWPAPLTWVMP--ASVDTPSWVRGQFDTVAVRVSNHPLVQQL 121 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +G PL SAN SGQ + T + ++ + + +I +++G S S I + + Sbjct: 122 CLAFGKPLTSTSANLSGQPACTTRQEVV-AQLGNQIETVLEGETSGRCGPSEIRDA---R 177 Query: 188 KVRILRPG 195 +++LR G Sbjct: 178 SLQVLRQG 185 >gi|262402041|ref|ZP_06078605.1| YrdC family protein [Vibrio sp. RC586] gi|262351687|gb|EEZ00819.1| YrdC family protein [Vibrio sp. RC586] Length = 185 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 54/188 (28%), Positives = 90/188 (47%), Gaps = 10/188 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++A L +G IA PTE V+GL D N A+ RL IK+RP +I ++ ++ Sbjct: 4 LQQAVHVLQSGGVIAYPTEGVFGLGCDPDNQAAMLRLLAIKQRPIEKGVILIAANYEQLR 63 Query: 72 KHASVDPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + D L+ L ++ WP PLT V+ ++ D T RV ++L Sbjct: 64 PYIDEDQLTEQQLLQVLASWPAPLTWVMP--ASVDTPSWVRGQFDTVAVRVSNHPLVQQL 121 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +G PL SAN SGQ + T + ++ + + +I +++G S S I + + Sbjct: 122 CLAFGKPLTSTSANLSGQPACTTRQEVV-AQLGNQIETVLEGETSGRCGPSEIRDA---R 177 Query: 188 KVRILRPG 195 +++LR G Sbjct: 178 SLQVLRQG 185 >gi|325836782|ref|ZP_08166249.1| Sua5/YciO/YrdC/YwlC family protein [Turicibacter sp. HGF1] gi|325491160|gb|EGC93449.1| Sua5/YciO/YrdC/YwlC family protein [Turicibacter sp. HGF1] Length = 197 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 56/184 (30%), Positives = 96/184 (52%), Gaps = 12/184 (6%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 I PT+TVYG+ + +P A+ +++E+K RP LI +++ ++ V PL + Sbjct: 21 IVFPTDTVYGIGANIHSPIALNKIFEVKNRPTDKSLIILCANV--MQMEEIVGPLDQQVK 78 Query: 85 KL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140 L F PG LTL+L+ + ++ T T R+P +L+E G PLA SA Sbjct: 79 VLVDNFLPGGLTLILN--TKLELADEITRGKSTIGLRIPNHPVALELLEKIG-PLATTSA 135 Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200 N SG+ S T ++ S+ + + +ID G + + STI++ + ++ ILR G + E Sbjct: 136 NISGEPSPTMIET--SNPVISRVKFVIDDGETMEKVPSTILDC-TQSEIVILRQGAISEE 192 Query: 201 TLKR 204 +K+ Sbjct: 193 EIKK 196 >gi|225681026|gb|EEH19310.1| Sua5/YciO/YrdC/YwlC family protein [Paracoccidioides brasiliensis Pb03] Length = 412 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 65/238 (27%), Positives = 102/238 (42%), Gaps = 59/238 (24%) Query: 8 DSNALRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 ++ AL ++ E L + +P+A PTETVYGL D+ A++ +Y+ K+RPA NPLI HVS Sbjct: 57 EAKALLESAEALRMSDIPVAFPTETVYGLGADATRSAAVQGIYKAKQRPADNPLIVHVSS 116 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126 +++ +L S++ H S + R Sbjct: 117 REQLQR----------------------ILRSHSSSPDHGSSDSRKTGNQEREETNLIPP 154 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 + E PL G+I I IL C +G+EST+V+ Sbjct: 155 IYE----PL--------GRIDI-----ILDGGPC------------GVGVESTVVDGLLH 185 Query: 187 KKVRILRPGGLEIETLKRAISVE------LEYCVDETSTPQSPGMLKSHYAPRSQVRL 238 ILRPGG+ IE ++ E + + P++PGM HY+P+++V L Sbjct: 186 PPA-ILRPGGIGIEEIRACPGWEDVRVGYKDGALQGKEAPRAPGMKYKHYSPKAKVVL 242 >gi|293375560|ref|ZP_06621834.1| Sua5/YciO/YrdC/YwlC family protein [Turicibacter sanguinis PC909] gi|292645777|gb|EFF63813.1| Sua5/YciO/YrdC/YwlC family protein [Turicibacter sanguinis PC909] Length = 223 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 97/186 (52%), Gaps = 12/186 (6%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 I PT+TVYG+ + +P A+ +++E+K RP LI +++ ++ V PL + Sbjct: 21 IVFPTDTVYGIGANIHSPIALNKIFEVKNRPTDKSLIILCANV--MQMEEIVGPLDQQVK 78 Query: 85 KL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140 L F PG LTL+L+ + ++ T T R+P +L+E G PLA SA Sbjct: 79 VLVDNFLPGGLTLILN--TKLELADEITRGKSTIGLRIPNHPVALELLEKVG-PLATTSA 135 Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200 N SG+ S T ++ S+ + + +ID G + + STI++ + ++ ILR G + E Sbjct: 136 NISGEPSPTMIET--SNPVISRVKFVIDDGETMEKVPSTILDC-TQSEIVILRQGAISEE 192 Query: 201 TLKRAI 206 +K+ + Sbjct: 193 EIKKVL 198 >gi|255746765|ref|ZP_05420711.1| YrdC family protein [Vibrio cholera CIRS 101] gi|262166889|ref|ZP_06034610.1| YrdC family protein [Vibrio cholerae RC27] gi|255735522|gb|EET90921.1| YrdC family protein [Vibrio cholera CIRS 101] gi|262024660|gb|EEY43340.1| YrdC family protein [Vibrio cholerae RC27] Length = 185 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 56/190 (29%), Positives = 89/190 (46%), Gaps = 14/190 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++A + L G IA PTE V+GL D N TA+ RL IK+RP +I + + ++ Sbjct: 4 LQQAVDALRKGCVIAYPTEGVFGLGCDPDNQTAMLRLLAIKQRPVEKGVILIAASYAQLR 63 Query: 72 KHASVDPLSLHLAKLF-----WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + VD L +L WP PLT V+ ++ D T RV + Sbjct: 64 PY--VDETQLTAEQLTQVLASWPAPLTWVMP--ASGDTPSWVRGQFDTVAVRVSDHPVVQ 119 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 KL +G PL SAN SGQ + + ++ + +I ++++G S S I + Sbjct: 120 KLCLAFGKPLTSTSANLSGQPACVTQQEVM-VQLGNQIAVVVEGKTSGRHGPSEIRDA-- 176 Query: 186 EKKVRILRPG 195 + +++LR G Sbjct: 177 -RSLQVLRQG 185 >gi|54023023|ref|YP_117265.1| hypothetical protein nfa10560 [Nocardia farcinica IFM 10152] gi|54014531|dbj|BAD55901.1| hypothetical protein [Nocardia farcinica IFM 10152] Length = 234 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 61/194 (31%), Positives = 92/194 (47%), Gaps = 9/194 (4%) Query: 8 DSNA--LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 DS A L A L +G + +PT+T+YGLA D+ + TA+ L K+R P+ V Sbjct: 24 DSRAAGLTAATSALKSGRLVVMPTDTLYGLAADAFDSTAVAELLAAKRRGRDMPVPVLVG 83 Query: 66 DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 + + SV P + L + FWPG L+LV+ + T T R+P Sbjct: 84 SWNTIDGLVFSVRPQARDLIRAFWPGGLSLVVQQAPSLAWDLGDTRG--TVMLRMPLHPV 141 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 L+ G PLA+ SAN SGQ T + + + +DGG + + STIV++ Sbjct: 142 ALDLLRDVG-PLAVSSANVSGQPPATTAAEA-REQLGSLVSVYLDGGPAAHAVASTIVDL 199 Query: 184 QCEKKVRILRPGGL 197 ++ RILR G + Sbjct: 200 TADRP-RILREGAV 212 >gi|229524955|ref|ZP_04414360.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae bv. albensis VL426] gi|229338536|gb|EEO03553.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae bv. albensis VL426] Length = 188 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 56/190 (29%), Positives = 90/190 (47%), Gaps = 14/190 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++A + L G IA PTE V+GL D N TA+ RL IK+RP +I + + ++ Sbjct: 7 LQQAVDALRKGCVIAYPTEGVFGLGCDPDNQTAMLRLLAIKQRPVEKGVILIAASYAQLR 66 Query: 72 KHA-----SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + + D L+ LA WP PLT V+ ++ D T RV + Sbjct: 67 PYVDETQLTADQLTQVLAS--WPAPLTWVMP--ASGDTPSWIRGQFDTVAVRVSDHPVVQ 122 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 KL +G PL SAN SGQ + + ++ + +I ++++G S S I + Sbjct: 123 KLCLAFGKPLTSTSANLSGQPACVTQQEVM-VQLGNQIAVVVEGKTSGRHGPSEIRDA-- 179 Query: 186 EKKVRILRPG 195 + +++LR G Sbjct: 180 -RSLQVLRQG 188 >gi|153217569|ref|ZP_01951250.1| Sua5/YciO/YrdC family protein [Vibrio cholerae 1587] gi|229515908|ref|ZP_04405365.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae TMA 21] gi|124113481|gb|EAY32301.1| Sua5/YciO/YrdC family protein [Vibrio cholerae 1587] gi|229347008|gb|EEO11970.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae TMA 21] Length = 188 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 58/192 (30%), Positives = 88/192 (45%), Gaps = 21/192 (10%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 NALRK C IA PTE V+GL D N TA+ RL IK+RP +I + + Sbjct: 12 NALRKGCV-------IAYPTEGVFGLGCDPDNQTAMLRLLAIKQRPVEKGVILIAASYAQ 64 Query: 70 VKKHASVDPLSLHLAKLF-----WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 ++ + VD L +L WP PLT V+ ++ D T RV Sbjct: 65 LRPY--VDETQLTAEQLTQVLASWPAPLTWVMP--ASGDTPSWVRGQFDTVAVRVSDHPV 120 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 +KL +G PL SAN SGQ + + ++ + +I ++++G S S I + Sbjct: 121 VQKLCLAFGKPLTSTSANLSGQPACVTRQEVM-VQLGNQIAVVVEGKTSGRHGPSEIRDA 179 Query: 184 QCEKKVRILRPG 195 + +++LR G Sbjct: 180 ---RSLQVLRQG 188 >gi|15835032|ref|NP_296791.1| hypothetical protein TC0414 [Chlamydia muridarum Nigg] gi|270285197|ref|ZP_06194591.1| hypothetical protein CmurN_02078 [Chlamydia muridarum Nigg] gi|270289216|ref|ZP_06195518.1| hypothetical protein CmurW_02138 [Chlamydia muridarum Weiss] gi|301336593|ref|ZP_07224795.1| hypothetical protein CmurM_02130 [Chlamydia muridarum MopnTet14] gi|7190456|gb|AAF39270.1| conserved hypothetical protein [Chlamydia muridarum Nigg] Length = 280 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 68/200 (34%), Positives = 101/200 (50%), Gaps = 19/200 (9%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L + E + +G A PT+TVYGL V P A ++L+ +K+R L +VS + ++ Sbjct: 2 LSQHIERIRSGQVFAFPTDTVYGLGVSFLIPEADKQLFALKRRNPQKALSVYVSSLEELE 61 Query: 72 KHAS--VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLI 128 A + S+ +A+ F PGPLTL+ H + KT FR V K++I Sbjct: 62 YVAQRRLGEASIKIAQKFLPGPLTLITK-------HNNPRFSQKTLGFRIVEHPIVKQII 114 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 + G PL SAN SG S + + K+I L+I G S IGLEST+V+ E++ Sbjct: 115 QEVG-PLLATSANVSGFPSAVSSDEVKQDFPEKDI-LVISGTCS-IGLESTVVD--AEER 169 Query: 189 VRILRPG---GLEIETLKRA 205 + I R G EIE + +A Sbjct: 170 I-IYREGVVSAAEIEDVLQA 188 >gi|15640086|ref|NP_229713.1| Sua5/YciO/YrdC family protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587255|ref|ZP_01677028.1| Sua5/YciO/YrdC family protein [Vibrio cholerae 2740-80] gi|121727865|ref|ZP_01680924.1| Sua5/YciO/YrdC family protein [Vibrio cholerae V52] gi|147673407|ref|YP_001218359.1| Sua5/YciO/YrdC family protein [Vibrio cholerae O395] gi|153817585|ref|ZP_01970252.1| Sua5/YciO/YrdC family protein [Vibrio cholerae NCTC 8457] gi|153821951|ref|ZP_01974618.1| Sua5/YciO/YrdC family protein [Vibrio cholerae B33] gi|229508338|ref|ZP_04397842.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae BX 330286] gi|229508823|ref|ZP_04398314.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae B33] gi|229517094|ref|ZP_04406540.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae RC9] gi|229520239|ref|ZP_04409666.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae TM 11079-80] gi|229530161|ref|ZP_04419550.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae 12129(1)] gi|229606613|ref|YP_002877261.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae MJ-1236] gi|254851618|ref|ZP_05240968.1| Sua5/YciO/YrdC family protein [Vibrio cholerae MO10] gi|262155846|ref|ZP_06028968.1| YrdC family protein [Vibrio cholerae INDRE 91/1] gi|81545625|sp|Q9KVT5|RIMN_VIBCH RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|212288233|sp|A5F4C5|RIMN_VIBC3 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|9654448|gb|AAF93232.1| Sua5/YciO/YrdC family protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|18254364|gb|AAL66733.1| Sua5/YciO/YrdC family protein [Vibrio cholerae] gi|121548501|gb|EAX58557.1| Sua5/YciO/YrdC family protein [Vibrio cholerae 2740-80] gi|121629809|gb|EAX62224.1| Sua5/YciO/YrdC family protein [Vibrio cholerae V52] gi|126511853|gb|EAZ74447.1| Sua5/YciO/YrdC family protein [Vibrio cholerae NCTC 8457] gi|126520571|gb|EAZ77794.1| Sua5/YciO/YrdC family protein [Vibrio cholerae B33] gi|146315290|gb|ABQ19829.1| Sua5/YciO/YrdC family protein [Vibrio cholerae O395] gi|227011943|gb|ACP08153.1| Sua5/YciO/YrdC family protein [Vibrio cholerae O395] gi|229332294|gb|EEN97781.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae 12129(1)] gi|229342833|gb|EEO07824.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae TM 11079-80] gi|229346157|gb|EEO11129.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae RC9] gi|229354098|gb|EEO19030.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae B33] gi|229354611|gb|EEO19533.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae BX 330286] gi|229369268|gb|ACQ59691.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae MJ-1236] gi|254847323|gb|EET25737.1| Sua5/YciO/YrdC family protein [Vibrio cholerae MO10] gi|262030298|gb|EEY48940.1| YrdC family protein [Vibrio cholerae INDRE 91/1] Length = 188 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 56/190 (29%), Positives = 89/190 (46%), Gaps = 14/190 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++A + L G IA PTE V+GL D N TA+ RL IK+RP +I + + ++ Sbjct: 7 LQQAVDALRKGCVIAYPTEGVFGLGCDPDNQTAMLRLLAIKQRPVEKGVILIAASYAQLR 66 Query: 72 KHASVDPLSLHLAKLF-----WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + VD L +L WP PLT V+ ++ D T RV + Sbjct: 67 PY--VDETQLTAEQLTQVLASWPAPLTWVMP--ASGDTPSWVRGQFDTVAVRVSDHPVVQ 122 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 KL +G PL SAN SGQ + + ++ + +I ++++G S S I + Sbjct: 123 KLCLAFGKPLTSTSANLSGQPACVTQQEVM-VQLGNQIAVVVEGKTSGRHGPSEIRDA-- 179 Query: 186 EKKVRILRPG 195 + +++LR G Sbjct: 180 -RSLQVLRQG 188 >gi|296268875|ref|YP_003651507.1| Sua5/YciO/YrdC/YwlC family protein [Thermobispora bispora DSM 43833] gi|296091662|gb|ADG87614.1| Sua5/YciO/YrdC/YwlC family protein [Thermobispora bispora DSM 43833] Length = 215 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 62/205 (30%), Positives = 91/205 (44%), Gaps = 19/205 (9%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 L A + G + IPT+TVYG+ D+ N A+ L E K R P V +S Sbjct: 16 GLTDAASAVRRGELVVIPTDTVYGIGCDAFNTRAVAALLEAKGRGRDMPAPVLVGTVSAA 75 Query: 71 KKHASVDPLSLH---LAKLFWPGPLTLVLDLLSTTDIHPLSTANL----KTACFRVPC-G 122 A V L H L FWPGPLTL+ +P +L T R+P Sbjct: 76 T--ALVQSLGTHGQDLIDAFWPGPLTLIF------RANPSLAWDLGDTKGTVAVRMPMHQ 127 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 L+ G P+A+ SANRSGQ T V+ + + + +DGG + STIV+ Sbjct: 128 VALDLLRETG-PMAVSSANRSGQPPATTVEEA-QEQLGDAVSVYLDGGPCTDNVPSTIVD 185 Query: 183 VQCEKKVRILRPGGLEIETLKRAIS 207 + R+LR G + ++ ++ + Sbjct: 186 LTTAVP-RLLRKGAIPVDKIRGVVG 209 >gi|84488926|ref|YP_447158.1| hypothetical protein Msp_0096 [Methanosphaera stadtmanae DSM 3091] gi|84372245|gb|ABC56515.1| conserved hypothetical protein [Methanosphaera stadtmanae DSM 3091] Length = 208 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 59/197 (29%), Positives = 95/197 (48%), Gaps = 10/197 (5%) Query: 1 MQIMSITDS---NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 M+++ I D+ N L K L G + PT+T+YG+ VD N A++++Y KKR Sbjct: 1 MEMVYIVDNPNKNELNKIRSMLGQGKLVVYPTDTIYGIGVDINNIDAVKKVYMTKKRSYD 60 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 P+ + DI+ VK+ A V H+ PGP TL+ L ++I + TAN Sbjct: 61 KPISICLHDITQVKEVAIVTDEIEHIINELLPGPYTLL--LRKKSNIPDILTANTNIIGI 118 Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P T L + + P+ SAN S + N+ I + I + ID G Sbjct: 119 RIPDNKITHSLTKDF--PITSTSANLSNIQTPDNITDI-KKQLGDNIDIYIDCGKKIKNQ 175 Query: 177 ESTIVNVQCEKKVRILR 193 STI+++ ++ +I+R Sbjct: 176 PSTIIDL-TQQNPKIIR 191 >gi|94266543|ref|ZP_01290229.1| Sua5/YciO/YrdC/YwlC [delta proteobacterium MLMS-1] gi|93452818|gb|EAT03344.1| Sua5/YciO/YrdC/YwlC [delta proteobacterium MLMS-1] Length = 204 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 52/192 (27%), Positives = 88/192 (45%), Gaps = 4/192 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++ E L G I PT+TVYG+ D N A++R+Y++K RP P +D+ + Sbjct: 13 IKRVVEALRQGAVICYPTDTVYGIGCDIFNQKAVKRIYQLKCRPLGQPFSFICADLKEIS 72 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 +A V + + PGP T VL +T + + + KT RVP +L+ Sbjct: 73 NYAHVSNTGYRVMRKSLPGPYTFVLP--ATKLVPKIMMSKQKTVGIRVPDNRICLELVAG 130 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G+P+ SA S + + + ID G + ST+V++ + ++ Sbjct: 131 LGNPILTTSAAPDDPDSRQLLAFEVDERYGHLVDYTIDSGPLTVAQPSTVVSM-VDDELT 189 Query: 191 ILRPGGLEIETL 202 +LRPG +E L Sbjct: 190 VLRPGKGRLEDL 201 >gi|302344113|ref|YP_003808642.1| Sua5/YciO/YrdC/YwlC family protein [Desulfarculus baarsii DSM 2075] gi|301640726|gb|ADK86048.1| Sua5/YciO/YrdC/YwlC family protein [Desulfarculus baarsii DSM 2075] Length = 203 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 52/186 (27%), Positives = 90/186 (48%), Gaps = 6/186 (3%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L G +A PT+T YGL D + A+RRL++IK +P P D+ + +A+V Sbjct: 22 LREGGVVAYPTDTSYGLGCDIFSQKALRRLHQIKAQPESKPFSFICPDLKDLSTYANVTN 81 Query: 79 LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAI 137 + + PGP T VL+ + + KT RVP +++ GHP+A Sbjct: 82 YAYKTLRRLLPGPYTFVLE--GSRHAPKMVLTKRKTVGIRVPDHPVCLAIVQELGHPIAS 139 Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197 +A GQ N + S + + L++DGG + GL S+++ + ++ +I+R G Sbjct: 140 TTA-MDGQGRALNTPWEIESELGHALDLVVDGGPAP-GLLSSVIGLIGDEP-QIIREGAG 196 Query: 198 EIETLK 203 ++E + Sbjct: 197 DVEEFR 202 >gi|227487984|ref|ZP_03918300.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium glucuronolyticum ATCC 51867] gi|227092075|gb|EEI27387.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium glucuronolyticum ATCC 51867] Length = 212 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 56/198 (28%), Positives = 97/198 (48%), Gaps = 15/198 (7%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 L A + ++AG + IPT+TVYG+ ++ NP A+ +L + K R P+ V V Sbjct: 16 GLNSAADAVEAGRLVVIPTDTVYGIGCNAFNPEAVNKLLQAKHRGPDMPVPVLVGSWDTV 75 Query: 71 KKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANL----KTACFRVPCG-FT 124 + + ++ L + FWPG L++V+ P T NL + R+P Sbjct: 76 RGLSRDYTRQMNVLIEAFWPGGLSIVVPQ------APSLTWNLGDTNGSVMLRMPLQKLA 129 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 +L++ G P+A+ SAN SGQ N + + + + ++GG ++IG STI+++ Sbjct: 130 IELLQKTG-PMAVSSANISGQPPALNAREA-EEQLGNSVSVYLEGGQAEIGTPSTIIDL- 186 Query: 185 CEKKVRILRPGGLEIETL 202 + ILR G + E + Sbjct: 187 TQATPTILREGAIPSEKI 204 >gi|94266276|ref|ZP_01289981.1| Sua5/YciO/YrdC/YwlC [delta proteobacterium MLMS-1] gi|93453127|gb|EAT03598.1| Sua5/YciO/YrdC/YwlC [delta proteobacterium MLMS-1] Length = 206 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 52/192 (27%), Positives = 88/192 (45%), Gaps = 4/192 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++ E L G I PT+TVYG+ D N A++R+Y++K RP P +D+ + Sbjct: 15 IKRVVEALRQGAVICYPTDTVYGIGCDIFNQKAVKRIYQLKCRPLGQPFSFICADLKEIS 74 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 +A V + + PGP T VL +T + + + KT RVP +L+ Sbjct: 75 NYAHVSNTGYRVMRKSLPGPYTFVLP--ATKLVPKIMMSKQKTVGIRVPDNRICLELVAG 132 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G+P+ SA S + + + ID G + ST+V++ + ++ Sbjct: 133 LGNPILTTSAAPDDPDSRQLLAFEVDERYGHLVDYTIDSGPLTVAQPSTVVSM-VDDELT 191 Query: 191 ILRPGGLEIETL 202 +LRPG +E L Sbjct: 192 VLRPGKGRLEDL 203 >gi|254291086|ref|ZP_04961883.1| Sua5/YciO/YrdC family protein [Vibrio cholerae AM-19226] gi|150422931|gb|EDN14881.1| Sua5/YciO/YrdC family protein [Vibrio cholerae AM-19226] Length = 188 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 56/190 (29%), Positives = 89/190 (46%), Gaps = 14/190 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++A + L G IA PTE V+GL D N TA+ RL IK+RP +I + + ++ Sbjct: 7 LQQAMDALRKGCVIAYPTEGVFGLGCDPDNQTAMLRLLAIKQRPVEKGVILIAASYAQLR 66 Query: 72 KHASVDPLSLHLAKLF-----WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + VD L +L WP PLT V+ ++ D T RV + Sbjct: 67 PY--VDETQLTAEQLTQVLASWPAPLTWVMP--ASGDTPSWVRGQFDTVAVRVSDHPVVQ 122 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 KL +G PL SAN SGQ + + ++ + +I ++++G S S I + Sbjct: 123 KLCLAFGKPLTSTSANLSGQPACVTQQEVM-VQLGNQIAVVVEGKTSGRHGPSEIRDA-- 179 Query: 186 EKKVRILRPG 195 + +++LR G Sbjct: 180 -RSLQVLRQG 188 >gi|297581913|ref|ZP_06943833.1| Sua5/YciO/YrdC family protein [Vibrio cholerae RC385] gi|297533780|gb|EFH72621.1| Sua5/YciO/YrdC family protein [Vibrio cholerae RC385] Length = 188 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 56/190 (29%), Positives = 90/190 (47%), Gaps = 14/190 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++A + L G IA PTE V+GL D N TA+ RL IK+RP +I + + ++ Sbjct: 7 LQQAVDALRKGCVIAYPTEGVFGLGCDPDNQTAMLRLLAIKQRPVEKGVILIAASYAQLR 66 Query: 72 KHA-----SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + + D L+ LA WP PLT V+ ++ D T RV + Sbjct: 67 PYVDETQLTADQLTQVLAS--WPAPLTWVMP--ASGDTPSWIRGQFDTVAVRVSDHPVVQ 122 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 KL +G PL SAN SGQ + + ++ + +I ++++G S S I + Sbjct: 123 KLCLAFGKPLTSTSANLSGQPACVTRQEVM-VQLGNQIAVVVEGKTSGRHGPSEIRDA-- 179 Query: 186 EKKVRILRPG 195 + +++LR G Sbjct: 180 -RSLQVLRQG 188 >gi|256072137|ref|XP_002572393.1| hypothetical protein [Schistosoma mansoni] gi|238657551|emb|CAZ28624.1| expressed protein [Schistosoma mansoni] Length = 287 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 66/220 (30%), Positives = 93/220 (42%), Gaps = 53/220 (24%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 +A+PT+T+YGLA N AI R+ IK R P+ + +S + + L Sbjct: 45 VALPTDTIYGLACSVFNTEAIERIRRIKGRSETKPMAICLDQVSHISHWCDTKNIPTGLL 104 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLSTANL----KTACFRVP-CGFTKKLIE---------- 129 PGP+T++L S PLST L K R+P GF +KLI Sbjct: 105 SDLLPGPVTVLLPRFSDRLQDPLSTRLLNLGDKRVGIRIPDSGFIRKLISALNEQTRSSS 164 Query: 130 --------------------TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169 + GHPL + SAN SGQ S ++ S I I LII+G Sbjct: 165 IIGNNVEHSSGCDERDSISISGGHPLVLTSANLSGQPSAIQIEEF--SEIWSSIDLIING 222 Query: 170 G------------ISKIGLESTIVNV-QCEKKV-RILRPG 195 G S+ G STI+++ C+K V ++R G Sbjct: 223 GPIQSDIFSGNSDCSRAG--STIIDLCNCDKSVYSVVRNG 260 >gi|324523357|gb|ADY48235.1| YrdC domain-containing protein [Ascaris suum] Length = 226 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 68/235 (28%), Positives = 111/235 (47%), Gaps = 30/235 (12%) Query: 2 QIMSITDSN---ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58 +I+ +TDS AL +A L++G IA+PT+T+YGL+ N +L+++K R M Sbjct: 3 KIIRLTDSTFEVALSRAVAVLESGGVIALPTDTIYGLSTTLGNAD---KLFKLKFRSRMK 59 Query: 59 PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 P +SD++ + K A + + +H + PGP+TLV + ++ + +T R Sbjct: 60 PFALFLSDVTEISKWA-IPTIGIHTMRRLLPGPVTLVFN--RSSRLPAEFNEGHRTIGIR 116 Query: 119 VPC-GFTKKLIETYGH-PLAIPSANRSGQ----ISITNVKHILSSSICKEIPLIIDGG-- 170 +P F L + G PLA SAN SG +S+ + + + + LIIDG Sbjct: 117 IPDHSFVHALSKRLGDTPLAQTSANLSGAAENPVSVEDFEDLWPG-----VDLIIDGDVL 171 Query: 171 ------ISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETST 219 +S+ G ST+VN+ I+R G T +R L D S+ Sbjct: 172 KDPTGKVSRRG--STVVNLCIPGTYSIIRDGCARSSTEERLRDCGLTAITDGESS 224 >gi|305681802|ref|ZP_07404606.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium matruchotii ATCC 14266] gi|305658275|gb|EFM47778.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium matruchotii ATCC 14266] Length = 227 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 65/233 (27%), Positives = 110/233 (47%), Gaps = 22/233 (9%) Query: 2 QIMSITDSNALRK-----ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR-P 55 +I S TD+ +R A + +G + +PT+T+YGL D+ + A+ RL K R P Sbjct: 3 RIYSCTDTGEIRSLGIKAAVGAVKSGRLVVLPTDTLYGLGCDAFDNDAVARLLAAKDRGP 62 Query: 56 AMN-PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANL-- 112 M P++ D + H+ D L L + FWPG L++V+ P NL Sbjct: 63 DMPVPVLVGSWDTARGLVHSYNDQLR-TLIEAFWPGGLSIVVPQ------APSLMWNLGD 115 Query: 113 --KTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169 T R+P +L+ G P+A+ SAN SGQ T + + ++ + +DG Sbjct: 116 TRGTVMLRMPLHPVAIELLRETG-PMAVSSANISGQPPATTAA-MAEEQLGDKVNVYLDG 173 Query: 170 GISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQS 222 G + +G+ S+I++V ++ R+LR G + + + V E TP++ Sbjct: 174 GETSVGVASSIIDVSGDQP-RLLREGAIPATRIADVLGVAPETLTPAARTPEN 225 >gi|325294265|ref|YP_004280779.1| Sua5/YciO/YrdC/YwlC family protein [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064713|gb|ADY72720.1| Sua5/YciO/YrdC/YwlC family protein [Desulfurobacterium thermolithotrophum DSM 11699] Length = 203 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 63/214 (29%), Positives = 104/214 (48%), Gaps = 22/214 (10%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 MQ++S D + K + L AG I PT+T++G+ ++ + +++LY +KKR PL Sbjct: 1 MQVLSKED---IEKISQILRAGELICSPTDTLFGILGNALDKEVVKKLYSVKKRDVNKPL 57 Query: 61 ICHVSDISMVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I S I + + PL L+ K +P P+T++L L + + + R+ Sbjct: 58 IVLFSSIEQLVNFGVLVPLKYLNGLKKLYPAPVTVILPLSKESPFRKVFQRD--NLAVRI 115 Query: 120 PC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKE-----IPLIIDGGISK 173 P F +KLI+ PL PSAN G++ N K CK I I+G +S+ Sbjct: 116 PKDDFLQKLIKK-TFPLFAPSANPQGELPAKNCKE------CKNYFDGVINFCIEGKVSE 168 Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS 207 STIV++ E V ++R G ++ E + +S Sbjct: 169 A--PSTIVDLTGETPV-LIRKGIVKFEKVLEVLS 199 >gi|282163670|ref|YP_003356055.1| hypothetical protein MCP_1000 [Methanocella paludicola SANAE] gi|282155984|dbj|BAI61072.1| conserved hypothetical protein [Methanocella paludicola SANAE] Length = 197 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 62/198 (31%), Positives = 93/198 (46%), Gaps = 17/198 (8%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 N + +A + G IA PTETVYG+ + + A++R+Y+IK RP PL VS + Sbjct: 4 GNDIARAAGIVKTGGVIAYPTETVYGIGALATDVGALQRVYQIKNRPLNQPLSIAVSSME 63 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCG-FTKK 126 M+K A V+ L F PGP+T++ L I P + TA K R P Sbjct: 64 MLKSVAKVECEDFILK--FLPGPVTVI---LKKNKILPDILTARSKYIGIRWPDNKMALD 118 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LI G P+ SAN G+ + + + + ++DGG + G STIV++ Sbjct: 119 LINQTG-PIVSTSANLHGEKDPVRAEEVKIA-----VDYVLDGGPCRYGAPSTIVDLHEY 172 Query: 187 KKVRILRPGGLEIETLKR 204 VR G+ E ++R Sbjct: 173 TVVR----KGIMYEEVRR 186 >gi|254491166|ref|ZP_05104347.1| Sua5/YciO/YrdC/YwlC family protein [Methylophaga thiooxidans DMS010] gi|224463679|gb|EEF79947.1| Sua5/YciO/YrdC/YwlC family protein [Methylophaga thiooxydans DMS010] Length = 188 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 74/147 (50%), Gaps = 8/147 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 LR+A + L+ G IA PTE VYG+ D + A+ L EIK+RP LI +D + ++ Sbjct: 12 LRQAVKTLNLGGTIAYPTEAVYGVGCDPWDEEAVLTLLEIKQRPWTKGLILIAADFNQLQ 71 Query: 72 KHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 ++P+S L + WPGP+T +L + +D+ T T RV T++L Sbjct: 72 DF--IEPVSAAMLEQLQQTWPGPVTWLLP--ARSDVPGYLTGMHDTIAVRVTAHPLTRQL 127 Query: 128 IETYGHPLAIPSANRSGQISITNVKHI 154 E +G + SAN +G NV + Sbjct: 128 CEAFGGAIVSTSANITGLKPAMNVHQV 154 >gi|197122573|ref|YP_002134524.1| Sua5/YciO/YrdC/YwlC family protein [Anaeromyxobacter sp. K] gi|220917357|ref|YP_002492661.1| Sua5/YciO/YrdC/YwlC family protein [Anaeromyxobacter dehalogenans 2CP-1] gi|196172422|gb|ACG73395.1| Sua5/YciO/YrdC/YwlC family protein [Anaeromyxobacter sp. K] gi|219955211|gb|ACL65595.1| Sua5/YciO/YrdC/YwlC family protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 207 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 54/193 (27%), Positives = 96/193 (49%), Gaps = 8/193 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A L +G IA PT+T YG+ D + AI R+Y++K+ P + L D++ + Sbjct: 19 VERAVSALSSGGVIAYPTDTFYGIGCDLFDKRAIERIYQLKQLPRTHELAFICQDLAEIS 78 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130 ++A VD + + + PGP T +L +T + L KT R+P +L+ Sbjct: 79 RYAIVDNAAYRVLRRKVPGPFTFILP--ATRLVPELVLRRQKTVGIRIPDSPIALELVRR 136 Query: 131 YGHPLAIPSANR-SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 GHPL SA + G+I I H + + + LI+DGG + S+++++ + V Sbjct: 137 LGHPLISTSAAKPEGEILID--AHDIKDELGHGLDLILDGGF-RPAEPSSVIDLSGPEPV 193 Query: 190 RILRPGGLEIETL 202 ++R G ++ L Sbjct: 194 -VVRAGKGDVSDL 205 >gi|225010663|ref|ZP_03701133.1| Sua5/YciO/YrdC/YwlC family protein [Flavobacteria bacterium MS024-3C] gi|225005216|gb|EEG43168.1| Sua5/YciO/YrdC/YwlC family protein [Flavobacteria bacterium MS024-3C] Length = 188 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 52/195 (26%), Positives = 96/195 (49%), Gaps = 23/195 (11%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 AL+K+ E L G I PT+TV+G+ D++N A+ +++ +KKR ++C V++++M+ Sbjct: 6 ALKKSAEILKQGGVILYPTDTVWGIGCDAKNEAAVEKVFALKKRADTKSMLCLVANVAML 65 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDL---LSTTDIHPLSTANLKTACFRVPCGFTKKL 127 ++H + P + + P T++ D ++ I P ++ ++ A + F L Sbjct: 66 ERHIAQVPEAAYDIIDLSEKPTTIIFDQPIGVAKNLIGPDNSLGIRVAKDK----FCSYL 121 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE--------ST 179 + PL SAN +GQ + N + I S I K + I+ LE ST Sbjct: 122 SQNIKGPLVSTSANLAGQPTPKNFQEI-SQEILKGVDYIVP-------LEPEIHNNTPST 173 Query: 180 IVNVQCEKKVRILRP 194 I+ + V+++RP Sbjct: 174 IIKLSNSGLVKVIRP 188 >gi|225022788|ref|ZP_03711980.1| hypothetical protein CORMATOL_02833 [Corynebacterium matruchotii ATCC 33806] gi|224944395|gb|EEG25604.1| hypothetical protein CORMATOL_02833 [Corynebacterium matruchotii ATCC 33806] Length = 227 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 65/233 (27%), Positives = 110/233 (47%), Gaps = 22/233 (9%) Query: 2 QIMSITDSNALRK-----ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR-P 55 +I S TD+ +R A + +G + +PT+T+YGL D+ + A+ RL K R P Sbjct: 3 RIYSCTDTGEVRSLGIKAAVGAVKSGRLVVLPTDTLYGLGCDAFDNDAVARLLAAKDRGP 62 Query: 56 AMN-PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANL-- 112 M P++ D + H+ D L L + FWPG L++V+ P NL Sbjct: 63 DMPVPVLVGSWDTARGLVHSYNDQLR-TLIEAFWPGGLSIVVPQ------APSLMWNLGD 115 Query: 113 --KTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169 T R+P +L+ G P+A+ SAN SGQ T + + ++ + +DG Sbjct: 116 TRGTVMLRMPLHPVAIELLRETG-PMAVSSANISGQPPATTAA-MAEEQLGDKVNVYLDG 173 Query: 170 GISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQS 222 G + +G+ S+I++V ++ R+LR G + + + V E TP++ Sbjct: 174 GETSVGVASSIIDVSGDQP-RLLREGAIPATRIADVLGVAPETLTPAARTPEN 225 >gi|85859579|ref|YP_461781.1| Sua5/YciO/YrdC/YwlC family protein [Syntrophus aciditrophicus SB] gi|85722670|gb|ABC77613.1| Sua5/YciO/YrdC/YwlC family protein [Syntrophus aciditrophicus SB] Length = 202 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 88/186 (47%), Gaps = 8/186 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 ++K E L G + PT+TVYGL + N I ++YEIKKR PL +D+ + Sbjct: 15 IKKVAEILRDGGIVIYPTDTVYGLGCNLFNKKGIEKIYEIKKRNKKQPLSFICADLKDIS 74 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 K+A V + K PGP T +L ++ + + +T RVP L+ Sbjct: 75 KYAQVTDFGYRIMKRHLPGPYTFILQ--ASRLVPKIILPKRQTTGIRVPDNRICMALVAE 132 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKKV 189 G P+ I ++ ++ N + S + +II+GGI I E STIV++ + V Sbjct: 133 LGQPI-ISTSVKAADDRYLNDPEEIESIFKHHVDVIINGGI--IAAEPSTIVSL-IDDTV 188 Query: 190 RILRPG 195 +LR G Sbjct: 189 EVLRIG 194 >gi|172040387|ref|YP_001800101.1| hypothetical protein cur_0707 [Corynebacterium urealyticum DSM 7109] gi|171851691|emb|CAQ04667.1| conserved hypothetical protein [Corynebacterium urealyticum DSM 7109] Length = 219 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 59/204 (28%), Positives = 97/204 (47%), Gaps = 13/204 (6%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 A+ A + G I +PT+T+YG+ D+ + A+ L + K R P+ + Sbjct: 15 GAIVTAENAVKGGRLIVMPTDTLYGIGCDAFDNAAVEALLQAKHRGPDMPVPVLIGSWET 74 Query: 70 VKKHASVDPLSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLK-TACFRVPCG-FT 124 V+ V S HL +L FWPG L+LV+ + P + + + T R+P Sbjct: 75 VE--GLVAEFSAHLRRLVEAFWPGGLSLVVPQAPSL---PWNLGDTRGTVMLRMPNHPIA 129 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 L++ G P+A+ SAN SGQ T V + + + + +DGG + IG STIV++ Sbjct: 130 IDLLQRTG-PMAVSSANVSGQPPATTVA-MAEDQLGDSVAVYLDGGEATIGEPSTIVDLA 187 Query: 185 CEKKVRILRPGGLEIETLKRAISV 208 + RILR G + E + + + Sbjct: 188 GHRP-RILREGAISAEQIGEVLQM 210 >gi|242237896|ref|YP_002986077.1| SUA5/yciO/yrdC domain protein [Dickeya dadantii Ech703] gi|242129953|gb|ACS84255.1| SUA5/yciO/yrdC domain protein [Dickeya dadantii Ech703] Length = 189 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 47/146 (32%), Positives = 71/146 (48%), Gaps = 7/146 (4%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83 IA PTE V+GL D + A+ RL ++K+RP LI +D + V+ + V LS + Sbjct: 22 IAYPTEAVFGLGCDPDSEVAVNRLLQLKQRPWEKGLILIAADFAQVEPYIDVSALSYIQQ 81 Query: 84 AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140 ++F WPGP+T V+ + T T + RV K+L +G PL SA Sbjct: 82 QRMFSTWPGPVTWVIPAKAQTP--KWLTGQFSSLAVRVSDHPLVKQLCLAFGKPLVSTSA 139 Query: 141 NRSGQISITNVKHILSSSICKEIPLI 166 N SG+ + +L S K P++ Sbjct: 140 NLSGEAPCRTAEDVL-SQFGKNFPVL 164 >gi|284036531|ref|YP_003386461.1| Sua5/YciO/YrdC/YwlC family protein [Spirosoma linguale DSM 74] gi|283815824|gb|ADB37662.1| Sua5/YciO/YrdC/YwlC family protein [Spirosoma linguale DSM 74] Length = 206 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 52/182 (28%), Positives = 87/182 (47%), Gaps = 11/182 (6%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNP--LICHVSDISMVKKHAS 75 L G I PT+T+YG+ D N A+ R+ IK +PA N IC+ D+S + +A Sbjct: 25 LRDGAVIIYPTDTIYGMGCDIHNTRAVERVARIKGIKPAKNDFSFICY--DLSHIADYAR 82 Query: 76 VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134 V + L K PGP T +L+ +T + + +N KT RVP ++++ G+P Sbjct: 83 VGNQAFKLMKKVLPGPFTFILE--ATGSVPKILNSNKKTVGIRVPDNDIPRQIVHELGNP 140 Query: 135 LAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 + S + I + ++ ++ ++IDGG + STIV+ + I+R Sbjct: 141 IITTSIRDEDEIIEYSTDPELIFEKFQNQVDMVIDGGYGG-NVASTIVDA-TDDNFSIIR 198 Query: 194 PG 195 G Sbjct: 199 QG 200 >gi|319948466|ref|ZP_08022602.1| hypothetical protein ES5_03818 [Dietzia cinnamea P4] gi|319437886|gb|EFV92870.1| hypothetical protein ES5_03818 [Dietzia cinnamea P4] Length = 217 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 59/207 (28%), Positives = 90/207 (43%), Gaps = 19/207 (9%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 L A L AG + PT+T+YG+A D+ +P A+ L K R P+ V + Sbjct: 16 GLSSAAGALRAGRLVVTPTDTLYGIAADAFDPDAVNLLLSAKHRGPDMPVPVLVGSWETI 75 Query: 71 KKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK------TACFRVPCG- 122 P + L + FWPG L+L+ +H + N T R+P Sbjct: 76 DGLVVSTPAPARDLIRAFWPGGLSLI--------VHQAPSLNWNLGHTRGTVMLRMPLHP 127 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 +L+ G PLA+ SAN SGQ T V + + + +DGG IG STIV+ Sbjct: 128 VAIELLREVG-PLAVSSANVSGQPPATTVAQA-REQLGDSVAVYLDGGPCAIGAPSTIVD 185 Query: 183 VQCEKKVRILRPGGLEIETLKRAISVE 209 + RI+R G + E + + ++ Sbjct: 186 ITGAAP-RIVREGAVTAERVGEVLGID 211 >gi|301614722|ref|XP_002936826.1| PREDICTED: hypothetical protein LOC100498107 [Xenopus (Silurana) tropicalis] Length = 866 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 58/196 (29%), Positives = 97/196 (49%), Gaps = 11/196 (5%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++LR LD G IPT+TVY LA ++P AI R+Y IK+RP+ P+ +S++ Sbjct: 652 TSSLRTIANILDNGGVCGIPTDTVYALAASCKHPEAINRIYSIKERPSEKPICICISNLD 711 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPLS--TANLKTACFRVP-C 121 ++ + PL L +PG ++ ++ + L + P + RVP Sbjct: 712 QLRVISPPFSPLLWRFMDLVYPGGISCIVQKGEWLKKLGVGPAYERVGTNDSIMIRVPDH 771 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 T L + G PLAI SAN SG+ T+ ++ + + ++ ++ G S + ST+V Sbjct: 772 SVTAHLTDMTG-PLAITSANPSGESDSTHHDMVI-TRLSDKLDAVLCDGFSNELVGSTVV 829 Query: 182 NVQ--CEKKVRILRPG 195 N E ++ILR G Sbjct: 830 NCTKIDEGTIKILREG 845 >gi|258626121|ref|ZP_05720972.1| Sua5/YciO/YrdC family protein [Vibrio mimicus VM603] gi|262172819|ref|ZP_06040497.1| YrdC family protein [Vibrio mimicus MB-451] gi|258581647|gb|EEW06545.1| Sua5/YciO/YrdC family protein [Vibrio mimicus VM603] gi|261893895|gb|EEY39881.1| YrdC family protein [Vibrio mimicus MB-451] Length = 185 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 56/190 (29%), Positives = 91/190 (47%), Gaps = 14/190 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++A L +G IA PTE V+GL D N A+ RL IK+RP +I ++ ++ Sbjct: 4 LQQAVHVLQSGGVIAYPTEGVFGLGCDPDNQAAMLRLLAIKQRPIEKGVILIAANYEQLR 63 Query: 72 KHASVDPLSL-HLAKLF--WPGPLTLVLDLLSTTDIHPLST--ANLKTACFRVPCG-FTK 125 + + L+ LA++ WP PLT V+ IH S T RV + Sbjct: 64 PYIDENQLTADQLAQVLASWPAPLTWVM----PASIHTPSWVRGQFDTVAVRVSNHPLVQ 119 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +L +G PL SAN SGQ + T + ++ + + +I +++G S S I + Sbjct: 120 QLCLAFGKPLTSTSANLSGQSACTTQQEVV-AQLGSQIEAVLEGKTSGRCGPSEIRDA-- 176 Query: 186 EKKVRILRPG 195 + +++LR G Sbjct: 177 -RSLQVLRQG 185 >gi|237712469|ref|ZP_04542950.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|237726660|ref|ZP_04557141.1| conserved hypothetical protein [Bacteroides sp. D4] gi|265752175|ref|ZP_06087968.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 3_1_33FAA] gi|229435186|gb|EEO45263.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] gi|229453790|gb|EEO59511.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|263236967|gb|EEZ22437.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 3_1_33FAA] Length = 191 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 53/185 (28%), Positives = 89/185 (48%), Gaps = 6/185 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L+KACE + G I PT+T++G+ D+ NP A++R+Y+IKKR ++ V V Sbjct: 9 LKKACEVMQKGGVILYPTDTIWGIGCDATNPKAVKRVYDIKKRADSKAMLVLVDSTVKVN 68 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIET 130 + S P F PLT++ D ++ A + RV F+K+L Sbjct: 69 FYVSDVPAVAWDLIEFATKPLTIIYD--GARNLAENLLAEDGSVGIRVTAEEFSKQLCFR 126 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQCEKK 188 + + SAN SGQ S N I S + + + I++ ++G S+I+ + + Sbjct: 127 FRKAIVSTSANISGQPSPANFSEI-SEEVKQAVDYIVEYRQDEVGHPKPSSIIKLGKGGE 185 Query: 189 VRILR 193 V+I+R Sbjct: 186 VKIIR 190 >gi|320449794|ref|YP_004201890.1| Sua5/YciO/YrdC/YwlC family protein [Thermus scotoductus SA-01] gi|320149964|gb|ADW21342.1| Sua5/YciO/YrdC/YwlC family protein [Thermus scotoductus SA-01] Length = 197 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 57/203 (28%), Positives = 93/203 (45%), Gaps = 17/203 (8%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 M+ L++A E L G +A PT+TV+G+ + A RR+Y +K R PL Sbjct: 1 MAEVYQKELQEAAETLRRGGLVAFPTDTVWGILARLEDEAACRRIYALKGRGEEKPLQVL 60 Query: 64 VSDISMVKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 V+D+ K + L L LA+ FWPG LT+V + +I P + + + R+P Sbjct: 61 VTDLESALKLVDLGKLRDKFLRLAEAFWPGGLTVV---VPGQNIPPWISRD-GSVGLRMP 116 Query: 121 C-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 ++L+ G A S NRSG+ + K + P +GL S+ Sbjct: 117 DHALLRELLRRVGGYAAATSLNRSGEPPVRTEKEAREFGVDYVFP------GEALGLASS 170 Query: 180 IVNVQCEKKVRILRPGGLEIETL 202 +V+++ + +LR G + E L Sbjct: 171 VVDLRTGE---VLREGAIPKEAL 190 >gi|212691027|ref|ZP_03299155.1| hypothetical protein BACDOR_00517 [Bacteroides dorei DSM 17855] gi|212666259|gb|EEB26831.1| hypothetical protein BACDOR_00517 [Bacteroides dorei DSM 17855] Length = 191 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 53/185 (28%), Positives = 89/185 (48%), Gaps = 6/185 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L+KACE + G I PT+T++G+ D+ NP A++R+Y+IKKR ++ V V Sbjct: 9 LKKACEVMQKGGVILYPTDTIWGIGCDATNPKAVKRVYDIKKRADSKAMLVLVDSTVKVN 68 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIET 130 + S P F PLT++ D ++ A + RV F+K+L Sbjct: 69 FYVSDVPAVAWNLIEFATKPLTIIYD--GARNLAENLLAEDGSVGIRVTAEEFSKQLCFR 126 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQCEKK 188 + + SAN SGQ S N I S + + + I++ ++G S+I+ + + Sbjct: 127 FRKAIVSTSANISGQPSPANFSEI-SEEVKQAVDYIVEYRQDEVGHPKPSSIIKLGKGGE 185 Query: 189 VRILR 193 V+I+R Sbjct: 186 VKIIR 190 >gi|324522067|gb|ADY47983.1| YrdC domain-containing protein [Ascaris suum] Length = 208 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 63/211 (29%), Positives = 104/211 (49%), Gaps = 30/211 (14%) Query: 2 QIMSITDSN---ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58 +I+ +TDS AL +A L++G IA+PT+T+YGL+ N +L+++K R M Sbjct: 3 KIIRLTDSTFEVALSRAVAVLESGGVIALPTDTIYGLSTTLGNAD---KLFKLKFRSRMK 59 Query: 59 PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 P +SD++ + K A + + +H + PGP+TLV + ++ + +T R Sbjct: 60 PFALFLSDVTEISKWA-IPTIGIHTMRRLLPGPVTLVFN--RSSRLPAEFNEGHRTIGIR 116 Query: 119 VPC-GFTKKLIETYGH-PLAIPSANRSGQ----ISITNVKHILSSSICKEIPLIIDGG-- 170 +P F L + G PLA SAN SG +S+ + + + + LIIDG Sbjct: 117 IPDHSFVHALSKRLGDTPLAQTSANLSGAAENPVSVEDFEDLWPG-----VDLIIDGDVL 171 Query: 171 ------ISKIGLESTIVNVQCEKKVRILRPG 195 +S+ G ST+VN+ I+R G Sbjct: 172 KDPTGKVSRRG--STVVNLCIPGTYSIIRDG 200 >gi|255038761|ref|YP_003089382.1| Sua5/YciO/YrdC/YwlC family protein [Dyadobacter fermentans DSM 18053] gi|254951517|gb|ACT96217.1| Sua5/YciO/YrdC/YwlC family protein [Dyadobacter fermentans DSM 18053] Length = 208 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 54/193 (27%), Positives = 89/193 (46%), Gaps = 11/193 (5%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNP--LICHV 64 D +R+ + L G + PT+TVYGL D N A+ ++ IK +P N IC+ Sbjct: 14 DERRVRQVVDCLRNGGLVIYPTDTVYGLGCDIYNTRAVEKIARIKGIKPQKNDFSFICY- 72 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 D+S + A V + K PGP T +L+ +T+++ L N KT RVP Sbjct: 73 -DLSHISDFARVGNTAFKTMKRVLPGPYTFILE--ATSNVPKLLNTNKKTVGIRVPDNLI 129 Query: 125 KKLI-ETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 +LI + G+P+ S + I + ++ ++ +++DGG + STIV Sbjct: 130 PRLIVKELGNPIVTTSIRDDDEIIEYSTDPELIFEKFQHQVDMVVDGGYGG-NVASTIVK 188 Query: 183 VQCEKKVRILRPG 195 + I+R G Sbjct: 189 ADGD-DFEIIREG 200 >gi|328950484|ref|YP_004367819.1| Sua5/YciO/YrdC/YwlC family protein [Marinithermus hydrothermalis DSM 14884] gi|328450808|gb|AEB11709.1| Sua5/YciO/YrdC/YwlC family protein [Marinithermus hydrothermalis DSM 14884] Length = 197 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV---DPLSL 81 +A PT+TV+GL + A RR+Y IK R A PL VS + + A + +P+ L Sbjct: 18 VAFPTDTVWGLLARMEDEAACRRIYRIKGRAAEKPLQVLVSSVEAALELAELGPHEPVFL 77 Query: 82 HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC--GFTKKLIETYGHPLAIPS 139 LA+ FWPGPLT+V + I P + + T R+P + L GH A S Sbjct: 78 ELAREFWPGPLTIV---VPGQAIPPWISPD-GTVGLRMPAHDELLEILAGVGGHAAAT-S 132 Query: 140 ANRSGQISITNVKHILSSSICKEIPLI--IDGGISKIGLESTIVNVQCEKKVRILRPGGL 197 N+SG + + L+ + PL+ + G + G+ S++V++ + ++LR GG+ Sbjct: 133 LNQSGAPPARSYEEALTFA-----PLVDRVHPGDTPAGVASSVVDL---VRGQVLREGGV 184 Query: 198 EIETLK 203 LK Sbjct: 185 PASALK 190 >gi|300741302|ref|ZP_07071323.1| Sua5/YciO/YrdC/YwlC family protein [Rothia dentocariosa M567] gi|300380487|gb|EFJ77049.1| Sua5/YciO/YrdC/YwlC family protein [Rothia dentocariosa M567] Length = 325 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 50/152 (32%), Positives = 79/152 (51%), Gaps = 14/152 (9%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-L 83 I IPT+TVYG+A D+ + + +L K R P + D++ + A P ++ L Sbjct: 7 IVIPTDTVYGIACDAFSHQGVSKLLADKGRSRTMPPPVLIFDLAALAGVADEIPNDVYDL 66 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANL----KTACFRVPCG-FTKKLIETYGHPLAIP 138 FWPG LT++L +P T +L T RVP F KL+ +G PLA+ Sbjct: 67 GNKFWPGALTIIL------YSYPSLTWDLGETQGTVAVRVPDDKFALKLLTEHG-PLAVS 119 Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGG 170 SAN++GQ + N K L + + +++ L++D G Sbjct: 120 SANKTGQPAAANAKEAL-TQLGEDVTLVVDDG 150 >gi|163783730|ref|ZP_02178716.1| hypothetical protein HG1285_01498 [Hydrogenivirga sp. 128-5-R1-1] gi|159880976|gb|EDP74494.1| hypothetical protein HG1285_01498 [Hydrogenivirga sp. 128-5-R1-1] Length = 209 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 61/204 (29%), Positives = 100/204 (49%), Gaps = 12/204 (5%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 +D ++ A L G I PT+T+YG+ D+ N ++ L ++ RP+ P I + D Sbjct: 12 SDPESVPLAVRSLGKGEFIVAPTDTIYGILADALNYNSVAGLKRLR-RPSGRPFIVLIPD 70 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTK 125 +S V K ++ +L L PG +T+V T H L +L R P GF Sbjct: 71 LSWVAK-LGLEARKENLKLLSLPG-ITVVFRK-KTGLYHWLGVDSL---AVRYPRRGFIY 124 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +L++ YG PL PSAN G +V + + L +DGG + G STI ++ Sbjct: 125 RLLKRYGKPLVAPSANPEGLPPARDVGEAM-GYFGDAVSLYVDGGRIE-GTPSTI--IKA 180 Query: 186 EKKVRILRPGGLEIETLKRAISVE 209 E+K+ ++R G L + L+R + ++ Sbjct: 181 EEKLEVIRRGSLSPDNLRRLLRLQ 204 >gi|313889339|ref|ZP_07822987.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pseudoporcinus SPIN 20026] gi|313122171|gb|EFR45262.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pseudoporcinus SPIN 20026] Length = 197 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 59/192 (30%), Positives = 94/192 (48%), Gaps = 10/192 (5%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 ++ G + +PTETVYGL + + A+ ++Y +K+RP + +V+D + ++ P Sbjct: 8 IENGGALILPTETVYGLFAKAMDEQAVNKVYALKQRPREKAMNLNVADYQAILDYSKDQP 67 Query: 79 LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK-TACFRVPCG-FTKKLIETYGHPL 135 L L F PGPLT++ L D P + K T FR+P T +LI G PL Sbjct: 68 AYLKELYDAFLPGPLTII---LKANDRVPFWINSGKDTVGFRLPKHPVTAQLIRLAG-PL 123 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 PSAN SG S I+ + + D ++ G +STI+++ K +ILR G Sbjct: 124 IGPSANLSGSQSGRRYADIIRAFHNQVEGYEDDQFLT--GEDSTIIDLSGS-KAKILRQG 180 Query: 196 GLEIETLKRAIS 207 + ++ IS Sbjct: 181 SISAAHIQAKIS 192 >gi|326673503|ref|XP_693825.3| PREDICTED: hypothetical protein LOC565454 [Danio rerio] Length = 880 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 59/198 (29%), Positives = 95/198 (47%), Gaps = 13/198 (6%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL-ICHVSD 66 +++ L K + L+ IPT+TVY LA +NP+AI ++Y IK RPA P+ IC S Sbjct: 667 ETSGLLKIAKLLENNGVCGIPTDTVYALAASCKNPSAIEKIYTIKDRPAEKPICICISSV 726 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPLS--TANLKTACFRVPC 121 +V PL + +PG ++ ++ D L + P ++ RVP Sbjct: 727 EQLVAAKPPFSPLLWEFMRNVYPGGISCIVPKGDWLLKLGVGPAYDRVGTRESIMIRVPD 786 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 + + PLAI SAN SG+ T+ +++ K ++ DG +++ + ST+V Sbjct: 787 HTATAHLCEFTGPLAITSANPSGEADSTHHDMVINRLGHKIEGVLCDGESNEV-VASTVV 845 Query: 182 NVQC----EKKVRILRPG 195 N C E + ILR G Sbjct: 846 N--CLKIDEGAISILREG 861 >gi|255004138|ref|ZP_05278939.1| hypothetical protein AmarV_01920 [Anaplasma marginale str. Virginia] Length = 214 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 52/190 (27%), Positives = 92/190 (48%), Gaps = 22/190 (11%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++ E L + PT+T+Y LA + + +++RLYEIK+R P+ ++ ++ ++ Sbjct: 1 MQRVVEALRKEQIVCFPTDTLYALACSALSANSVQRLYEIKRRQYHKPIPILLNSLAAIR 60 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK-TACFRVPC-GFTKKLIE 129 K AS+ + + PGP+T V+ L D L + T R+P + ++E Sbjct: 61 KFASLKDEDWGIIERLSPGPVTFVVPL---HDTQSLPGEFFRGTVGVRIPNHAMARTILE 117 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--------GLESTIV 181 +G P+A SAN SG + + EIP I +S++ G+ ST+ Sbjct: 118 EFGGPVAATSANLSG---------MPGARRAMEIPQEIRDCVSELMEDDSAVGGMCSTVF 168 Query: 182 NVQCEKKVRI 191 +VQ K +RI Sbjct: 169 DVQSRKVLRI 178 >gi|262273073|ref|ZP_06050890.1| YrdC family protein [Grimontia hollisae CIP 101886] gi|262222829|gb|EEY74137.1| YrdC family protein [Grimontia hollisae CIP 101886] Length = 185 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 52/181 (28%), Positives = 86/181 (47%), Gaps = 16/181 (8%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81 G IA PTE V+G+ D +P A++ L ++K R LI ++ S ++ + D LS Sbjct: 14 GEVIAYPTEGVFGVGCDPDSPQAVQALLDVKARDKAKGLILIAAEFSQLEGYIDFDSLSD 73 Query: 82 HLAK---LFWPGPLTLVLDL-LSTTDIHPLSTANLKTACFRV---PCGFTKKLIETYGHP 134 + WPGP+T V+ TTD T T RV P + L +YG P Sbjct: 74 EVKADVLATWPGPVTWVMPAGKKTTD---WVTGQFDTVAVRVSDHP--DVRALCLSYGKP 128 Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194 + SAN SG+ +V+ ++ + + +P +++G KIG ++ + ++LR Sbjct: 129 ITSTSANLSGEAPCRSVEEVV-KQLGERVPNVLEG---KIGGRDKPTEIRDARSGKVLRQ 184 Query: 195 G 195 G Sbjct: 185 G 185 >gi|197294283|ref|YP_001798824.1| Translation factor [Candidatus Phytoplasma australiense] gi|171853610|emb|CAM11481.1| Translation factor [Candidatus Phytoplasma australiense] Length = 188 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 51/181 (28%), Positives = 83/181 (45%), Gaps = 8/181 (4%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 I PT+TVYG+ V + ++ +Y++KKR +I S + + + +S LA Sbjct: 11 IIFPTDTVYGMGVSLYDEKGLKEIYQLKKRSLQKNIIVLCSSLKEAQTLVKFNEISYQLA 70 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRS 143 F+PGPLTL+L T L KT R+P L++ YG PL S N S Sbjct: 71 TKFFPGPLTLILK----TQTSYLKKTGQKTLGIRIPNHPLALSLLKKYG-PLKTTSVNES 125 Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203 G+ + N + + ++ I + + STIV+ K + +LR G + +K Sbjct: 126 GKEPL-NYYNTIYQMYNNKVGFIYPNDYPILKVASTIVDATTNKLI-VLRQGSISEAEIK 183 Query: 204 R 204 + Sbjct: 184 K 184 >gi|227329887|ref|ZP_03833911.1| putative DNA topoisomerase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 189 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 68/147 (46%), Gaps = 7/147 (4%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83 IA PTE V+GL D + A+ RL +K+RP LI +D S + + LS Sbjct: 22 IAYPTEAVFGLGCDPDSEVAVNRLLALKQRPWQKGLILIAADFSQLASYIDDSALSDEQK 81 Query: 84 AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140 A +F WPGP+T VL TT T + RV K+L + YG PL SA Sbjct: 82 AVMFSTWPGPVTWVLPAKHTT--PQWLTGQFSSLAVRVSDHPLVKELCQRYGKPLVSTSA 139 Query: 141 NRSGQISITNVKHILSSSICKEIPLII 167 N SGQ + + S + P+++ Sbjct: 140 NLSGQPPCRTAQEV-SQQFGDDFPVLV 165 >gi|117918499|ref|YP_867691.1| translation factor SUA5 [Shewanella sp. ANA-3] gi|212288226|sp|A0KR66|RIMN_SHESA RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|117610831|gb|ABK46285.1| translation factor SUA5 [Shewanella sp. ANA-3] Length = 188 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 54/176 (30%), Positives = 82/176 (46%), Gaps = 8/176 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L+ G+ IA PTE VYGL D N TAI++L +K+RP LI S+ S + + Sbjct: 14 LNGGV-IAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWQKGLILVASEFSQLVDYVDESQ 72 Query: 79 LS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHP 134 LS L A WPGP T V+ + + + RV + L + G P Sbjct: 73 LSAEQLEFAFSKWPGPFTFVMPI--KPHVSRYLCGEFDSIAVRVSAHDGVRALCQALGKP 130 Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 L SAN +G+ + IL++ K I ++ G + + STI++ + K +R Sbjct: 131 LVSTSANLAGEDPALSGDEILNAFEGK-IDALVLGALGEQRQPSTIIDARSGKILR 185 >gi|157373182|ref|YP_001471782.1| SUA5/YciO/YrdC/YwlC family protein [Shewanella sediminis HAW-EB3] gi|212288227|sp|A8FP81|RIMN_SHESH RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|157315556|gb|ABV34654.1| SUA5/YciO/YrdC/YwlC family protein [Shewanella sediminis HAW-EB3] Length = 185 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 55/178 (30%), Positives = 82/178 (46%), Gaps = 7/178 (3%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 E ++ G +A PTE VYGL D N AI RL +KKRP LI SD + + Sbjct: 11 EIIEQGGVVAYPTEAVYGLGCDPDNDEAITRLLALKKRPWQKGLILVASDYQQLLPYIDE 70 Query: 77 DPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYG 132 L+ L K+F WPGP T ++ + + L + + RV T + + + G Sbjct: 71 SRLTNEQLNKVFVKWPGPFTFIMPI--KPGLSNLLCGSFNSLAVRVSSHPTIQAICQRLG 128 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 PL SAN +G+ + + I+ + EI +I G + STIV+ K +R Sbjct: 129 KPLVSTSANHAGEPPAMSCEEII-AKFDGEIDALISGSLGAERKPSTIVDAISGKVLR 185 >gi|254427759|ref|ZP_05041466.1| Sua5/YciO/YrdC/YwlC family protein [Alcanivorax sp. DG881] gi|196193928|gb|EDX88887.1| Sua5/YciO/YrdC/YwlC family protein [Alcanivorax sp. DG881] Length = 182 Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 49/184 (26%), Positives = 87/184 (47%), Gaps = 7/184 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L A + + AG IA PTE+VYGL D N A+ +L IK+RP LI ++ + Sbjct: 5 LLSAAQIIQAGGVIAYPTESVYGLGCDPFNQDAVMQLLAIKQRPVSKGLILIGETLAQLA 64 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 + ++ + WP P+T +++ + + + RVP ++L Sbjct: 65 PYLRLNDQQAARLQQQWPAPVTYLVE--ANEHLPAWVRGQHRKVAVRVPDHPLARQLCNL 122 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G P+ SAN SG+ + N ++ ++ + ++ I+ G + STI++++ R Sbjct: 123 AGQPIISTSANISGRPAACN-RYQVARQLGDQLDFIVSGACDRASKPSTIIDLESG---R 178 Query: 191 ILRP 194 ILRP Sbjct: 179 ILRP 182 >gi|195953581|ref|YP_002121871.1| Sua5/YciO/YrdC/YwlC family protein [Hydrogenobaculum sp. Y04AAS1] gi|195933193|gb|ACG57893.1| Sua5/YciO/YrdC/YwlC family protein [Hydrogenobaculum sp. Y04AAS1] Length = 192 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 59/209 (28%), Positives = 100/209 (47%), Gaps = 23/209 (11%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYG-LAVDSRNPTAIRRLYEIKKRPAMNP 59 + I + + A L+ +PI PT+T+YG LA+D N A+ LY+I +RP+ P Sbjct: 3 FDVKKINEEGVIDSAVYILNKNMPICSPTDTIYGVLALD--NEEALELLYKI-RRPSKKP 59 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 + + DI+ ++ + F P L L I + A K+ FR+ Sbjct: 60 FLRLLPDIAFLEMYG------------FKPNDKVFELSKLEGVSI--IIKAQDKSLGFRI 105 Query: 120 PC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P GF K+L++ P+ PS N+ G+ +++ + S EI L ID G + S Sbjct: 106 PQKGFIKELLDKLQKPILAPSCNKEGEPPAKSIEEAI-SYFKDEISLYIDSGFIE-SPPS 163 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAIS 207 TIV ++ + ++I+R G+ I+ +K I Sbjct: 164 TIVEIE-QNTIKIVR-EGMSIDKVKELIE 190 >gi|153004978|ref|YP_001379303.1| Sua5/YciO/YrdC/YwlC family protein [Anaeromyxobacter sp. Fw109-5] gi|152028551|gb|ABS26319.1| Sua5/YciO/YrdC/YwlC family protein [Anaeromyxobacter sp. Fw109-5] Length = 235 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 52/194 (26%), Positives = 94/194 (48%), Gaps = 6/194 (3%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + +A L +G +A PT+T YGL D + AI R+Y++K+ P + L D++ Sbjct: 45 RVVERAVSVLSSGGLLAFPTDTYYGLGCDLFDKRAIERIYQLKQLPRSHELSFICQDLAE 104 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLI 128 + ++A VD + + + PGP T +L +T + L KT R+P +++ Sbjct: 105 ISRYAIVDNAAYRVLRRKVPGPYTFILP--ATRLVPDLVLRRQKTVGIRIPDSPIALEIV 162 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 GHPL SA G + + H + + + L++DGG K S+++++ + Sbjct: 163 RRLGHPLISTSAATPGGEVLIDA-HDIKEQLGHGLDLVLDGGY-KPNEPSSVIDLSGAEP 220 Query: 189 VRILRPGGLEIETL 202 R+LR G ++ L Sbjct: 221 -RVLRAGKGDVSDL 233 >gi|307822750|ref|ZP_07652981.1| SUA5/yciO/yrdC domain protein [Methylobacter tundripaludum SV96] gi|307736354|gb|EFO07200.1| SUA5/yciO/yrdC domain protein [Methylobacter tundripaludum SV96] Length = 185 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 50/180 (27%), Positives = 83/180 (46%), Gaps = 4/180 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 ++ A L AG IA PTE VYGL D N A+ L EIK+RP LI S + ++ Sbjct: 9 IKNAVRHLKAGAVIAYPTEAVYGLGCDPLNEDAVMTLLEIKQRPIEKGLILIASSLEQLR 68 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 + +D + WPGP+T V+ + + ++ RV + L Sbjct: 69 PYLVLDKTLIDRITPTWPGPVTWVIP--AQPWVPKWLRGEHQSLAVRVTNHPIARDLCAQ 126 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 +G PL SAN + + +I + +L + +I I+ G + ++ E+ I + K++R Sbjct: 127 FGSPLVSTSANPTTRPAIKESRKLLKTFADADI-FIVHGKVGELAQETAIYDAVSGKRLR 185 >gi|311898378|dbj|BAJ30786.1| hypothetical protein KSE_50080 [Kitasatospora setae KM-6054] Length = 215 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 62/210 (29%), Positives = 92/210 (43%), Gaps = 27/210 (12%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++ LR+A + G + +PT+TVYGLA D+ + A+ L K R P V S Sbjct: 14 ASGLREAASAIRRGELVVVPTDTVYGLAADAFSAEAVAGLLAAKGRGRNMPSPVLVG--S 71 Query: 69 MVKKHASVDPLS---LHLAKLFWPGPLTLV--------LDLLSTTDIHPLSTANLKTACF 117 H V S L FWPG LTLV DL T T Sbjct: 72 PTTLHGLVTDFSEQAWELVDAFWPGGLTLVARHQPSLRWDLGETR----------GTVAV 121 Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P +L+ G PLA+ S N++G S + + + + + +DGG + G Sbjct: 122 RMPLHPVVLELLNATG-PLAVSSGNKTGGPSPSTCDEA-EAQLGDAVSIYLDGGTADYGT 179 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAI 206 STIV+V + V +LR G + +E L+ + Sbjct: 180 PSTIVDVTGKVPV-VLRAGAISVEQLREVV 208 >gi|159902895|ref|YP_001550239.1| putative translation factor (SUA5) [Prochlorococcus marinus str. MIT 9211] gi|159888071|gb|ABX08285.1| Putative translation factor (SUA5) [Prochlorococcus marinus str. MIT 9211] Length = 196 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 63/210 (30%), Positives = 101/210 (48%), Gaps = 20/210 (9%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 MQ+ N ++K L+ G P+ PT+T+ LA ++ + +L+EIK R M PL Sbjct: 1 MQLSLFDSCNLVKK----LNEGSPVVFPTDTLPALAALPKHSS---QLWEIKNRSRMKPL 53 Query: 61 ICHVSDISMVKKHASVDPL--SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 I + K + L ++++A +WPGPLT+VL S++++ L + R Sbjct: 54 ILMGESPKQLFKFVYPNVLEDAIYMANRYWPGPLTMVLP--SSSNLVGLLNPGGSSIGLR 111 Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI---SKI 174 +P C KK + G PLA SAN SGQ + + I + PL+ G I Sbjct: 112 IPECDLAKKFLAKSG-PLATTSANLSGQKPSIDPEEI--TKCFPGFPLL--GPIPWPKSS 166 Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKR 204 GL ST++ Q ++R G + E L++ Sbjct: 167 GLASTVIAWQGPGNWHLIRRGAVIPENLEK 196 >gi|332827684|gb|EGK00423.1| Sua5/YciO/YrdC/YwlC family protein [Dysgonomonas gadei ATCC BAA-286] Length = 202 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 58/189 (30%), Positives = 93/189 (49%), Gaps = 21/189 (11%) Query: 20 DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP------LICHVSDISMVKKH 73 D GL I PT+TVY + D+ N A+ ++ +K +NP +IC+ D+S + ++ Sbjct: 24 DGGL-IVYPTDTVYAIGCDALNVRAVEKICRMKD---INPEKSNLSIICY--DLSNISEY 77 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYG 132 A VD + L K PGP T + L+TT P N KT R+P ++L+ T G Sbjct: 78 ARVDNNTFKLMKKNLPGPFTFI---LNTTSSLPKIYKNKKTVGIRIPDNNIIRELVHTLG 134 Query: 133 HPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKKVR 190 +P+ S + I T ++ + ++IDGG G+E STIV+ ++ Sbjct: 135 NPIMTTSVKDDDEVIEYTTDPELIYERYQDLVDIVIDGGYG--GIEASTIVDCTGDEP-E 191 Query: 191 ILRPGGLEI 199 I+R G E+ Sbjct: 192 IMRQGKGEL 200 >gi|110832995|ref|YP_691854.1| Sua5/YciO/YrdC/YwlC family protein [Alcanivorax borkumensis SK2] gi|123345894|sp|Q0VTD8|RIMN_ALCBS RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|110646106|emb|CAL15582.1| Sua5/YciO/YrdC/YwlC family protein [Alcanivorax borkumensis SK2] Length = 182 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 48/184 (26%), Positives = 87/184 (47%), Gaps = 7/184 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L A + + G +A PTE+VYGL D N A+ +L IK RP LI ++ + Sbjct: 5 LLSAAQIIQEGGVVAYPTESVYGLGCDPFNRNAVMQLLAIKHRPVSKGLILIGESLAQLA 64 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 + ++ + WP P+T ++D ++ + + RVP ++L + Sbjct: 65 PYLHLNEQQSAQLEKKWPAPITYLVD--ASDRLPAWVRGEHRKVAVRVPDHPLARQLCQL 122 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G P+ SAN SG+ + N ++ ++ + ++ I+ G + STI++++ R Sbjct: 123 AGQPIISTSANISGRPAARN-RYQVARQLGNQLDFIVSGACDRAAKPSTIIDLESG---R 178 Query: 191 ILRP 194 ILRP Sbjct: 179 ILRP 182 >gi|150002664|ref|YP_001297408.1| putative translation factor [Bacteroides vulgatus ATCC 8482] gi|254882164|ref|ZP_05254874.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|294776918|ref|ZP_06742379.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides vulgatus PC510] gi|319643278|ref|ZP_07997906.1| hypothetical protein HMPREF9011_03507 [Bacteroides sp. 3_1_40A] gi|149931088|gb|ABR37786.1| conserved hypothetical protein, putative translation factor [Bacteroides vulgatus ATCC 8482] gi|254834957|gb|EET15266.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|294449166|gb|EFG17705.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides vulgatus PC510] gi|317385182|gb|EFV66133.1| hypothetical protein HMPREF9011_03507 [Bacteroides sp. 3_1_40A] Length = 191 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 52/185 (28%), Positives = 89/185 (48%), Gaps = 6/185 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++ACE + G I PT+T++G+ D+ NP A++R+Y+IKKR ++ V V Sbjct: 9 LKRACEVMQKGGVILYPTDTIWGIGCDATNPEAVKRVYDIKKRADSKAMLVLVDSTVKVN 68 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIET 130 + S P F PLT++ D ++ A + RV F+K+L Sbjct: 69 FYVSDVPAVAWDLIEFTTKPLTIIYD--GARNLAENLLAEDGSVGIRVTAEEFSKQLCFR 126 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQCEKK 188 + + SAN SGQ S N I S + + + I++ ++G S+I+ + + Sbjct: 127 FRKAIVSTSANISGQPSPANFSEI-SEEVKQAVDYIVEYRQDEVGHPKPSSIIKLGKGGE 185 Query: 189 VRILR 193 V+I+R Sbjct: 186 VKIIR 190 >gi|332886163|gb|EGK06407.1| Sua5/YciO/YrdC/YwlC family protein [Dysgonomonas mossii DSM 22836] Length = 202 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 92/189 (48%), Gaps = 21/189 (11%) Query: 20 DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP------LICHVSDISMVKKH 73 D GL I PT+TVY + D+ N +R + EI K +NP +IC+ D+S + ++ Sbjct: 24 DGGL-IIYPTDTVYAIGCDALN---VRAVEEICKMKDINPAKSNLSIICY--DLSNISEY 77 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYG 132 A VD L K PGP T + L+TT P N KT R+P ++L+ G Sbjct: 78 AKVDNAIFKLMKKNLPGPFTFI---LNTTSSLPKIYKNKKTVGIRIPDNNIIRELVRNLG 134 Query: 133 HPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKKVR 190 +P+ S + + T ++ ++ ++IDGG G+E ST+V+ ++ Sbjct: 135 NPILTTSVKDEDEVVEYTTDPELIYEKYQDKVDIVIDGGFG--GIEGSTVVDCTSDEP-E 191 Query: 191 ILRPGGLEI 199 I+R G E+ Sbjct: 192 IIRQGKGEL 200 >gi|315604643|ref|ZP_07879706.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 180 str. F0310] gi|315313655|gb|EFU61709.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 180 str. F0310] Length = 224 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 58/212 (27%), Positives = 96/212 (45%), Gaps = 7/212 (3%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 + I AL +A L G + +PT+TVYG+ D+ N A+ + K R P Sbjct: 10 LTIAPTVRDEALARAAAVLSNGGILVVPTDTVYGIGCDAANHEAVAEVLAAKGRGRQMPP 69 Query: 61 ICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 V+ + + V + LA+ FWPG LTL+L TA T R+ Sbjct: 70 PVLVASVDAIDTLCVDVPDAARALARAFWPGALTLILRARPDLGWDLGQTAG--TIGVRM 127 Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P +L++ +G P+A+ SAN +GQ T V+ + +S + +DGG ++ S Sbjct: 128 PNQDALLRLLKEFG-PMAVTSANLTGQPPATTVEQAV-ASFGARVGAYLDGGPTRASTAS 185 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVEL 210 +I++ + R +R G + +E L V + Sbjct: 186 SIIDC-AHGEPRAIRLGAISLEELSSRAGVSI 216 >gi|297283021|ref|XP_002802371.1| PREDICTED: yrdC domain-containing protein, mitochondrial-like, partial [Macaca mulatta] Length = 268 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 71/233 (30%), Positives = 110/233 (47%), Gaps = 36/233 (15%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ALR A L AG +A+PT+T+YGLA + A+R +Y +K R PL + ++ Sbjct: 56 TEALRAAVAELRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVA 115 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVPC-GFTK 125 V ++ V + L K PGP+TLV++ D++P + R+P F + Sbjct: 116 DVYRYCRVR-VPEGLLKDLLPGPVTLVMERSEELNKDLNPFT----PLVGIRIPDHAFMQ 170 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS------KIGLEST 179 L + + PLA+ SAN S Q S NV+ + ++ L+IDGG + L ST Sbjct: 171 DLAQMFEGPLALTSANLSSQASSLNVEEF--RDLWPQLSLVIDGGQIGGGQSPECRLGST 228 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTP---QSPGMLKSH 229 +V++ K I+RPG C E++T Q G+L SH Sbjct: 229 VVDLSVPGKFGIIRPG-----------------CALESTTAILQQKYGLLPSH 264 >gi|115451395|ref|NP_001049298.1| Os03g0201600 [Oryza sativa Japonica Group] gi|113547769|dbj|BAF11212.1| Os03g0201600 [Oryza sativa Japonica Group] Length = 183 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 54/160 (33%), Positives = 75/160 (46%), Gaps = 4/160 (2%) Query: 44 AIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD 103 A+ R+YEIK R PL V+D+ + + A VD L L PGP+T+VL + + Sbjct: 13 AVNRIYEIKGRVQTRPLAICVADVPDISRFAVVDHLPHGLLDSLLPGPVTVVLKRGNNSI 72 Query: 104 IHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKE 162 + L++ RVP F + + G LA+ SAN SG S NVK + Sbjct: 73 LERSLNPGLESIGVRVPDFDFIRAISRGAGSALALTSANLSGHPSSVNVKDF--EDLWPH 130 Query: 163 IPLIIDGGISKIG-LESTIVNVQCEKKVRILRPGGLEIET 201 + DGGI G STIV++ +ILR G ET Sbjct: 131 CSYVFDGGILPSGRAGSTIVDLITPGVYKILRDGSSRQET 170 >gi|88601863|ref|YP_502041.1| Sua5/YciO/YrdC/YwlC [Methanospirillum hungatei JF-1] gi|88187325|gb|ABD40322.1| translation factor SUA5 [Methanospirillum hungatei JF-1] Length = 180 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 92/187 (49%), Gaps = 29/187 (15%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 + PT+T+YGL D+ + AI +++E K R P+ VSD M+ A VD ++ Sbjct: 6 VVYPTDTLYGLGADALSDEAILKVFEAKGREYHKPISIAVSDPDMIGAVAYVDEMAEQFI 65 Query: 85 KLFWPGPLTLVL---DLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSA 140 + F PGP+TL+L ++LST TA K R P +LI Y P+ SA Sbjct: 66 EEFLPGPVTLILPARNILSTR-----LTAGTKKIGIRYPNHEVALELISRYDTPITATSA 120 Query: 141 NRSG-----QISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 N SG I + NV + + ++ G +S G ST+V+++ + +R+ Sbjct: 121 NLSGGPDPVTIDLCNVPYDCAVNV---------GPLS--GTPSTVVDLEFREIIRV---- 165 Query: 196 GLEIETL 202 G +IE++ Sbjct: 166 GADIESV 172 >gi|56416667|ref|YP_153741.1| hypothetical protein AM436 [Anaplasma marginale str. St. Maries] gi|56387899|gb|AAV86486.1| hypothetical protein AM436 [Anaplasma marginale str. St. Maries] Length = 197 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 52/190 (27%), Positives = 92/190 (48%), Gaps = 22/190 (11%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++ E L + PT+T+Y LA + + +++RLYEIK+R P+ ++ ++ ++ Sbjct: 1 MQRVVEALRKEQIVCFPTDTLYALACSALSANSVQRLYEIKRRQYHKPIPILLNSLAAIR 60 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK-TACFRVPC-GFTKKLIE 129 K AS+ + + PGP+T V+ L D L + T R+P + ++E Sbjct: 61 KFASLKDEDWGIIERLSPGPVTFVVPL---HDTQSLPGEFFRGTVGVRIPNHAMARTILE 117 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--------GLESTIV 181 +G P+A SAN SG + + EIP I +S++ G+ ST+ Sbjct: 118 EFGGPVAATSANLSG---------MPGARRAMEIPQEIRDCVSELMEDDSAVGGMCSTVF 168 Query: 182 NVQCEKKVRI 191 +VQ K +RI Sbjct: 169 DVQSRKVLRI 178 >gi|309812117|ref|ZP_07705875.1| Sua5/YciO/YrdC/YwlC family protein [Dermacoccus sp. Ellin185] gi|308433804|gb|EFP57678.1| Sua5/YciO/YrdC/YwlC family protein [Dermacoccus sp. Ellin185] Length = 305 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 53/171 (30%), Positives = 80/171 (46%), Gaps = 6/171 (3%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLSLHL 83 + +PT+TVYG+ D NP + L K R P V + + V+ A SV + L Sbjct: 30 VVLPTDTVYGVGADPFNPDGVAALLAAKGRGRDKPPAVLVPNPATVEGLAMSVPSYARRL 89 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANR 142 FWPG LTL+ + + L N T R+P +L++ G PLA+ SANR Sbjct: 90 MDRFWPGGLTLIFRAQPSL-MWDLGDTN-GTVGLRMPDHEIALELLQATG-PLAVSSANR 146 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 +GQ +T + + + + +DGG GL STI++ V + R Sbjct: 147 TGQPPVTTITEA-GFAFGPAVEVYLDGGTCDDGLPSTILDCTKPDPVMLRR 196 >gi|113968380|ref|YP_732173.1| translation factor SUA5 [Shewanella sp. MR-4] gi|114045545|ref|YP_736095.1| translation factor SUA5 [Shewanella sp. MR-7] gi|122945098|sp|Q0I0R7|RIMN_SHESR RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|123325544|sp|Q0HPA1|RIMN_SHESM RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|113883064|gb|ABI37116.1| translation factor SUA5 [Shewanella sp. MR-4] gi|113886987|gb|ABI41038.1| translation factor SUA5 [Shewanella sp. MR-7] Length = 188 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 54/176 (30%), Positives = 82/176 (46%), Gaps = 8/176 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L+ G+ IA PTE VYGL D N TAI++L +K+RP LI S+ S + + Sbjct: 14 LNGGV-IAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWQKGLILVASEFSQLVDYVDESQ 72 Query: 79 LS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHP 134 LS L A WPGP T V+ + + + RV + L + G P Sbjct: 73 LSAEQLEFAFSKWPGPFTFVMPI--KPHVSRYLCGEFDSIAVRVSAHEGVRALCQALGKP 130 Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 L SAN +G+ + IL++ K I ++ G + + STI++ + K +R Sbjct: 131 LVSTSANLAGEDPALSGDEILNAFEGK-IDALVLGSLGEQRQPSTIIDARSGKILR 185 >gi|212288263|sp|A1S1K5|RIMN_SHEAM RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN Length = 187 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 79/170 (46%), Gaps = 7/170 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH---AS 75 +++G +A PTE VYGL D N TAI++L +K+RP LI S +K + + Sbjct: 13 IESGGVVAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWEKGLILIASSFDQLKPYIDLSR 72 Query: 76 VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHP 134 V L A WPGP T V+ + D+ P+ T RV + + P Sbjct: 73 VTEAQLQAAFDKWPGPFTFVIP--AKADVSPMLRGCFDTIAVRVSAHQDVRAMCYACQKP 130 Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 L SAN +G+ + + + + +I ++ G + + STI+++Q Sbjct: 131 LVSTSANLAGEQPALTLAEV-QTQLGDKIDAVVLGALGQSCQPSTIIDIQ 179 >gi|218778786|ref|YP_002430104.1| Sua5/YciO/YrdC/YwlC family protein [Desulfatibacillum alkenivorans AK-01] gi|218760170|gb|ACL02636.1| Sua5/YciO/YrdC/YwlC family protein [Desulfatibacillum alkenivorans AK-01] Length = 202 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 52/194 (26%), Positives = 95/194 (48%), Gaps = 8/194 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + E L G IA PT+T+YG+ D N AI+++Y +K+ + PL SD+ + Sbjct: 15 IAQVVEVLKRGGIIAYPTDTIYGIGCDIMNKKAIQKVYRLKQMESTQPLSFICSDLQNIS 74 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130 +A V + K PGP T +L+ ++ + + KTA RVP ++I+ Sbjct: 75 DYAKVSNYAYKTMKRLLPGPYTFILE--ASKLVPKIMITKRKTAGIRVPEHAICMEIIKE 132 Query: 131 YGHP-LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G+P ++ +A+ G + +L +I L+IDGG G S++V++ + + Sbjct: 133 LGNPIISTSAADLDGNEFMD--PSLLHDYYNNQIDLVIDGGPVS-GRASSVVSL-IDDEP 188 Query: 190 RILRPGGLEIETLK 203 +LR G ++ + Sbjct: 189 EVLRVGAGDVSIFE 202 >gi|33440306|ref|ZP_00141878.1| COG0009: Putative translation factor (SUA5) [Pasteuria nishizawae str. North American] Length = 150 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 41/112 (36%), Positives = 64/112 (57%), Gaps = 2/112 (1%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 A+++A + L G +A PTETVYGL + +AI+R++ K RP NPLI H +++ Sbjct: 28 TAIQEAAQCLQKGGVVAFPTETVYGLGALATRTSAIQRVFTAKNRPHDNPLILHFANVQR 87 Query: 70 VKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 + + P +L L + PGP+T V+ + + PL+TA+L T RVP Sbjct: 88 ILQALPSLPQALQNLLQSTMPGPITWVVP-HTIPWVSPLATASLPTIAVRVP 138 >gi|147790869|emb|CAN77236.1| hypothetical protein VITISV_024209 [Vitis vinifera] Length = 750 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 37/90 (41%), Positives = 55/90 (61%), Gaps = 1/90 (1%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 TD++A +A E + AG IA+PT+T+YG A D+ + A+ R+YEIK R +PL V D Sbjct: 616 TDAHA-EEAIEAIKAGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGD 674 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVL 96 + +++ A D L L PGP+T+VL Sbjct: 675 VLDIQRFAVTDHLPDGLLGSLLPGPVTVVL 704 >gi|222475032|ref|YP_002563447.1| hypothetical protein AMF_320 [Anaplasma marginale str. Florida] gi|255003012|ref|ZP_05277976.1| hypothetical protein AmarPR_01750 [Anaplasma marginale str. Puerto Rico] gi|269958915|ref|YP_003328704.1| putative translation factor [Anaplasma centrale str. Israel] gi|222419168|gb|ACM49191.1| Conserved hypothetical protein [Anaplasma marginale str. Florida] gi|269848746|gb|ACZ49390.1| putative translation factor [Anaplasma centrale str. Israel] Length = 197 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 52/190 (27%), Positives = 92/190 (48%), Gaps = 22/190 (11%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++ E L + PT+T+Y LA + + +++RLYEIK+R P+ ++ ++ ++ Sbjct: 1 MQRVVEALRKEQIVCFPTDTLYALACSALSANSVQRLYEIKRRQYHKPIPILLNSLAAIR 60 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK-TACFRVP-CGFTKKLIE 129 K AS+ + + PGP+T V+ L D L + T R+P + ++E Sbjct: 61 KFASLKDEDWGIIERLSPGPVTFVVPL---HDTQSLPGEFFRGTVGVRIPDHAMARTILE 117 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--------GLESTIV 181 +G P+A SAN SG + + EIP I +S++ G+ ST+ Sbjct: 118 EFGGPVAATSANLSG---------MPGARRAMEIPQEIRDCVSELMEDDSAVGGMCSTVF 168 Query: 182 NVQCEKKVRI 191 +VQ K +RI Sbjct: 169 DVQSRKVLRI 178 >gi|154151514|ref|YP_001405132.1| Sua5/YciO/YrdC/YwlC family protein [Candidatus Methanoregula boonei 6A8] gi|154000066|gb|ABS56489.1| Sua5/YciO/YrdC/YwlC family protein [Methanoregula boonei 6A8] Length = 190 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 82/169 (48%), Gaps = 13/169 (7%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 I PT+T+YGL D+ + A+ ++YE KKR P+ VSD M+ + P + Sbjct: 17 IVYPTDTLYGLGADAFSDEALEKVYEAKKRDLSKPISIAVSDFEMLAAVSHTTPFAEEFI 76 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANRS 143 + F PGP+T+++ + + + + R+P G ++IE + P+ SAN S Sbjct: 77 ERFLPGPVTVIVPVRKM--LPEILSGGTGMIGIRIPAHGVALQIIEKFDAPITATSANLS 134 Query: 144 GQISITNVKHILSSSICKEIP--LIIDGGISKIGLESTIVNVQCEKKVR 190 G K + C +P L +DGG G ST+V++ ++ VR Sbjct: 135 GG------KDPQTPEECT-VPRDLFVDGG-RLAGKPSTVVDLTKKEIVR 175 >gi|119773191|ref|YP_925931.1| SUA5/YciO/YrdC-like protein [Shewanella amazonensis SB2B] gi|119765691|gb|ABL98261.1| translation factor SUA5 [Shewanella amazonensis SB2B] Length = 190 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 79/170 (46%), Gaps = 7/170 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH---AS 75 +++G +A PTE VYGL D N TAI++L +K+RP LI S +K + + Sbjct: 16 IESGGVVAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWEKGLILIASSFDQLKPYIDLSR 75 Query: 76 VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHP 134 V L A WPGP T V+ + D+ P+ T RV + + P Sbjct: 76 VTEAQLQAAFDKWPGPFTFVIP--AKADVSPMLRGCFDTIAVRVSAHQDVRAMCYACQKP 133 Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 L SAN +G+ + + + + +I ++ G + + STI+++Q Sbjct: 134 LVSTSANLAGEQPALTLAEV-QTQLGDKIDAVVLGALGQSCQPSTIIDIQ 182 >gi|289547987|ref|YP_003472975.1| Sua5/YciO/YrdC/YwlC family protein [Thermocrinis albus DSM 14484] gi|289181604|gb|ADC88848.1| Sua5/YciO/YrdC/YwlC family protein [Thermocrinis albus DSM 14484] Length = 201 Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 58/211 (27%), Positives = 105/211 (49%), Gaps = 20/211 (9%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 + ++ S R A L+ G+ A PT+T+YGL ++ + A+ RL+ I+ RP+ P + Sbjct: 3 LVVSPSKVFRVAEVILEGGIAFA-PTDTIYGLLANALDRRAVERLFAIR-RPSGRPFLL- 59 Query: 64 VSDISMVKKHASVDPLSLHLA----KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 ++ + ++ L L + KL G +TLV+ ++ ++ T K+ R+ Sbjct: 60 -----LIPQEDWIEELGLIIGPRQRKLLSLG-ITLVIPKRTSVPLY--LTRGRKSLAVRL 111 Query: 120 P---CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 P GF + L++ G PL PSAN G T+VK + + + + + +D G +G Sbjct: 112 PSSTAGFIRDLLKVVGVPLVAPSANPEGLKPATSVKEGM-AYFGRRVNIYVDAG-KIVGK 169 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAIS 207 STIV + + VR++R G + + R +S Sbjct: 170 PSTIVRLIGYRSVRLVREGNVPFREVLRFLS 200 >gi|258622997|ref|ZP_05718012.1| Sua5/YciO/YrdC family protein [Vibrio mimicus VM573] gi|258584780|gb|EEW09514.1| Sua5/YciO/YrdC family protein [Vibrio mimicus VM573] Length = 185 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 56/190 (29%), Positives = 91/190 (47%), Gaps = 14/190 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++A L +G IA PTE V+GL D N A+ RL IK+RP +I ++ ++ Sbjct: 4 LQQAVHVLQSGGVIAYPTEGVFGLGCDPDNQAAMLRLLAIKQRPIEKGVILIAANYEQLR 63 Query: 72 KHASVDPLSL-HLAKLF--WPGPLTLVLDLLSTTDIHPLST--ANLKTACFRVPCG-FTK 125 + + L+ LA++ WP PLT V+ IH S T RV + Sbjct: 64 PYIDENQLTADQLAQVLASWPAPLTWVM----PASIHTPSWVRGQFDTVAVRVSNHPLVQ 119 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +L +G PL SAN SGQ + T + ++ + + +I +++G S S I + Sbjct: 120 QLCLAFGKPLTSTSANLSGQPACTTQQEVV-AQLGNQIETLLEGKTSGHCGPSEIRDA-- 176 Query: 186 EKKVRILRPG 195 + +++LR G Sbjct: 177 -RSLQVLRQG 185 >gi|254994878|ref|ZP_05277068.1| hypothetical protein AmarM_01965 [Anaplasma marginale str. Mississippi] Length = 197 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 52/190 (27%), Positives = 92/190 (48%), Gaps = 22/190 (11%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++ E L + PT+T+Y LA + + +++RLYEIK+R P+ ++ ++ ++ Sbjct: 1 MQRVVEALRKEQIVCFPTDTLYALACSALSANSVQRLYEIKRRQYHKPIPILLNSLAAIR 60 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK-TACFRVP-CGFTKKLIE 129 K AS+ + + PGP+T V+ L D L + T R+P + ++E Sbjct: 61 KFASLKDEDWGIIERLSPGPVTFVVPL---HDTQSLPGEFFRGTVGVRIPDHAMARTILE 117 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--------GLESTIV 181 +G P+A SAN SG + + EIP I +S++ G+ ST+ Sbjct: 118 EFGGPVAATSANLSG---------MPGARRAMEIPREIRDCVSELMEDDSAVGGMCSTVF 168 Query: 182 NVQCEKKVRI 191 +VQ K +RI Sbjct: 169 DVQSRKVLRI 178 >gi|118089561|ref|XP_420283.2| PREDICTED: hypothetical protein [Gallus gallus] Length = 687 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 57/196 (29%), Positives = 95/196 (48%), Gaps = 11/196 (5%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++ LR + L+ G +PT+TVY LA R+P AI ++Y IK RP P+ +S++ Sbjct: 475 TSGLRTIADLLNTGAVCGVPTDTVYALAASCRHPQAIEKVYRIKDRPQEKPICIFISNLD 534 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPLST--ANLKTACFRVP-C 121 ++ A + PL + +PG + ++ + L + + + RVP Sbjct: 535 QLRAAAPPISPLLWEFMENVYPGGVGCIIKKGEWLKKLGVGEGYSRVGTQDSIMIRVPDL 594 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 LI+ G PLAI SAN SG++ T+ ++S K ++ DG ++ + ST+V Sbjct: 595 TVLVHLIDMTG-PLAITSANPSGEVDSTHHDMVISRLGHKLEGVLCDGESDEV-VASTVV 652 Query: 182 NVQ--CEKKVRILRPG 195 N E + ILR G Sbjct: 653 NCTRIDESGITILREG 668 >gi|301064000|ref|ZP_07204465.1| Sua5/YciO/YrdC/YwlC family protein [delta proteobacterium NaphS2] gi|300441911|gb|EFK06211.1| Sua5/YciO/YrdC/YwlC family protein [delta proteobacterium NaphS2] Length = 209 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 72/161 (44%), Gaps = 10/161 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + E L+ G IA PT+T YG+ D N I+ +Y +K RP P ++ + Sbjct: 28 IDRVSEILEQGGVIAYPTDTFYGIGCDLYNKKGIQHIYRLKNRPLKKPFSFVCDGLNEIS 87 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130 K+A V + K PGP T +L+ T + + KT RVP T+ ++ T Sbjct: 88 KYALVSNYAYKTMKRLLPGPYTFILE--GTRLVPKIMLTKRKTVGIRVPNNNITRAIVRT 145 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171 G P+ SA +I + + + +IIDGG+ Sbjct: 146 LGRPIISTSAGFDEPRAIEDAYGV-------NLDVIIDGGL 179 >gi|163751675|ref|ZP_02158894.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella benthica KT99] gi|161328414|gb|EDP99570.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella benthica KT99] Length = 185 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 46/133 (34%), Positives = 63/133 (47%), Gaps = 6/133 (4%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 E ++ G IA PTE VYGL D N AI +L +K+RP LI SD S + + Sbjct: 11 ELIENGGVIAYPTEAVYGLGCDPDNDVAIEKLLGLKQRPWQKGLILVASDYSQLAPYLDD 70 Query: 77 DPLSL-HLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132 L+ L +F WPGP T ++ + S DI L + + RV + + G Sbjct: 71 TQLTTKQLESVFSKWPGPFTFIMPIRS--DISKLLCGSFNSLAVRVSAHPGIQAICNNLG 128 Query: 133 HPLAIPSANRSGQ 145 PL SAN +GQ Sbjct: 129 KPLVSTSANITGQ 141 >gi|261349624|ref|ZP_05975041.1| Sua5/YciO/YrdC/YwlC family protein [Methanobrevibacter smithii DSM 2374] gi|288861582|gb|EFC93880.1| Sua5/YciO/YrdC/YwlC family protein [Methanobrevibacter smithii DSM 2374] Length = 193 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 61/194 (31%), Positives = 91/194 (46%), Gaps = 20/194 (10%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS-- 65 D + +A + L G I PT+TVYGL + N A++R+Y IKKR + P+ VS Sbjct: 12 DKKVIDEAVKVLADGGVILYPTDTVYGLGANIFNRKAVKRVYNIKKRSYLKPISLLVSSK 71 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVP---- 120 D + ASV+ L+ + PGP T +L H S +AN+ RVP Sbjct: 72 DAIPLVSRASVN--QLNFMDKYLPGPYTFILKKSKIVPRHLTSGSANV---GIRVPESEI 126 Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 C K P+ SAN S + ++ + IL C E+ L+ID G K ST Sbjct: 127 ACNLAKLF------PITTTSANISSENTLDTPEEILEQLGC-EVDLVIDVGPLKSKNPST 179 Query: 180 IVNVQCEKKVRILR 193 I+++ E+ + + R Sbjct: 180 IIDLTAEEPIFVKR 193 >gi|283458330|ref|YP_003362951.1| putative translation factor [Rothia mucilaginosa DY-18] gi|283134366|dbj|BAI65131.1| putative translation factor [Rothia mucilaginosa DY-18] Length = 424 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 14/175 (8%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 A+ A E L A I +PT+TVYG+A D+ + + +L K R P + D++ Sbjct: 45 EAIEAAREALKAHDTIVMPTDTVYGIAADAFSHQGVAKLLADKGRDRTMPPPVLIFDLAA 104 Query: 70 VKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANL----KTACFRVPCG-F 123 + P ++ L FWPG LT++L +P + +L T RVP F Sbjct: 105 LAGVVDDVPNDIYDLGGRFWPGALTMIL------HAYPSLSWDLGETRGTVAVRVPDDEF 158 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 KL+ +G PLA+ SAN++G + + + + S+ +++ ++IDGG LES Sbjct: 159 ALKLLTEHG-PLAVSSANKTGHEAALDAQTAM-DSLGEDVAVVIDGGARPKPLES 211 >gi|111018482|ref|YP_701454.1| hypothetical protein RHA1_ro01481 [Rhodococcus jostii RHA1] gi|110818012|gb|ABG93296.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length = 218 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 60/205 (29%), Positives = 93/205 (45%), Gaps = 7/205 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S + A L AG + +PT+T+YG+ D+ + A+ L K R P+ V + Sbjct: 14 SAGMSAAKNALKAGRLVVLPTDTLYGIGADAFDSEAVAALLRAKGRGRDMPVPVLVGSWN 73 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + SV P + L + FWPG L+LV++ + T T R+P + Sbjct: 74 TIDGLVYSVRPQTRDLIRAFWPGGLSLVVEQAPSLAWDLGDTRG--TVMLRMPLHPVALE 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+ G PLA+ SAN SGQ T V+ + + +DGG ++ G STIV++ Sbjct: 132 LLREVG-PLAVSSANVSGQPPATTVEEA-REQLGGSASVYLDGGRAEQGQASTIVDLTGA 189 Query: 187 KKVRILRPGGLEIETLKRAISVELE 211 RILR G + + + V E Sbjct: 190 TP-RILREGAVPTGDVADVLGVTAE 213 >gi|307708641|ref|ZP_07645104.1| Sua5/YciO/YrdC family protein [Streptococcus mitis NCTC 12261] gi|307615215|gb|EFN94425.1| Sua5/YciO/YrdC family protein [Streptococcus mitis NCTC 12261] Length = 140 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 45/131 (34%), Positives = 69/131 (52%), Gaps = 5/131 (3%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L+ G + +PTETVYGL + + A+ +Y++K+RP L +++ + + + P Sbjct: 9 LENGGAVVLPTETVYGLFAKALDEKAVDHVYQLKRRPRDKALNLNIASLEDILHFSKNQP 68 Query: 79 LSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136 L L + F PGPLT++L+ + + + L T FR+P T LI G PL Sbjct: 69 TYLQKLVETFLPGPLTIILE--ANDRVPYWVNSGLATVGFRMPSHPITLDLIRETG-PLI 125 Query: 137 IPSANRSGQIS 147 PSAN SGQ S Sbjct: 126 GPSANISGQAS 136 >gi|218885947|ref|YP_002435268.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756901|gb|ACL07800.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 218 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 57/205 (27%), Positives = 96/205 (46%), Gaps = 15/205 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDIS 68 L A L AG + PTET +G+ + + A+ +Y +K+R A+ ++ HV ++ Sbjct: 13 LDDAAALLRAGRVVVFPTETFFGVGCLATHAGAVDEVYRVKRRAHRLALPVIVGHVDQLT 72 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128 V A + ++ LA+ FWPGPL+++L PL+ + A P ++L Sbjct: 73 QVA--APMGHVAEGLARRFWPGPLSILLPAAPGVP-EPLTGGTGRVAVRLTPHPAARELC 129 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID-GGISKIGLESTIVNV---- 183 G PL SAN SG+ ++T L + E+ ++D GL ST+V V Sbjct: 130 LRAGGPLVASSANISGRPAVTRAMD-LDPELLAEVAGVLDLPPAPPGGLPSTLVEVLDGG 188 Query: 184 ---QCEKKVRILRPGGLEIETLKRA 205 ++R+LR G + ++ L A Sbjct: 189 CIGDGAPRLRVLRAGAVSVQALSDA 213 >gi|148642672|ref|YP_001273185.1| Sua5/YciO/YrdC/YwlC family translation factor [Methanobrevibacter smithii ATCC 35061] gi|222445831|ref|ZP_03608346.1| hypothetical protein METSMIALI_01475 [Methanobrevibacter smithii DSM 2375] gi|148551689|gb|ABQ86817.1| putative translation factor, Sua5/YciO/YrdC/YwlC family [Methanobrevibacter smithii ATCC 35061] gi|222435396|gb|EEE42561.1| hypothetical protein METSMIALI_01475 [Methanobrevibacter smithii DSM 2375] Length = 193 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 61/194 (31%), Positives = 91/194 (46%), Gaps = 20/194 (10%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS-- 65 D + +A + L G I PT+TVYGL + N A++R+Y IKKR + P+ VS Sbjct: 12 DKKVIDEAVKVLADGGVILYPTDTVYGLGANIFNRKAVKRVYNIKKRSYLKPISLLVSSK 71 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVP---- 120 D + ASV+ L+ + PGP T +L H S +AN+ RVP Sbjct: 72 DAIPLVSRASVN--QLNFMDKYLPGPYTFILKKSKIVPRHLTSGSANV---GIRVPESEI 126 Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 C K P+ SAN S + ++ + IL C E+ L+ID G K ST Sbjct: 127 ACNLAKLF------PITTTSANISSENTLDTPEEILKQLGC-EVDLVIDVGPLKSKNPST 179 Query: 180 IVNVQCEKKVRILR 193 I+++ E+ + + R Sbjct: 180 IIDLTAEEPIFVKR 193 >gi|150025693|ref|YP_001296519.1| translation factor [Flavobacterium psychrophilum JIP02/86] gi|149772234|emb|CAL43710.1| Putative translation factor [Flavobacterium psychrophilum JIP02/86] Length = 188 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 91/187 (48%), Gaps = 5/187 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + A E + G I PT+TV+G+ D+ NP A+ ++Y++K+R +IC ++ Sbjct: 4 NQEIHNAYEVIKEGGIILYPTDTVWGIGCDATNPEAVAKIYKLKQRAETQSMICLMNGEK 63 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKL 127 M+ P P TL+LD + +I P A KT R V F KL Sbjct: 64 MMYNVFKDIPEVAWQIMDVSEKPTTLILD--NPRNIAPNLIATDKTLGIRIVKEPFCFKL 121 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCE 186 +E PL SAN SGQ + K I S I K + +++ KIG + STI+ + + Sbjct: 122 LERMKKPLVSTSANISGQPTPIAFKDI-SPEILKGVDYVVNLHHEKIGGKPSTIIKLTND 180 Query: 187 KKVRILR 193 +V+++R Sbjct: 181 SQVKVIR 187 >gi|94499923|ref|ZP_01306459.1| Sua5/YciO/YrdC/YwlC family protein [Oceanobacter sp. RED65] gi|94428124|gb|EAT13098.1| Sua5/YciO/YrdC/YwlC family protein [Oceanobacter sp. RED65] Length = 182 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 51/187 (27%), Positives = 83/187 (44%), Gaps = 21/187 (11%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV--- 70 +A + L IA PTETV+GL D +P A++R+ IKKR LI +I Sbjct: 7 QASKVLQHSGVIAYPTETVWGLGCDPWDPAALQRIVSIKKRDQHKGLILVAGNIGQFDFL 66 Query: 71 ------KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGF 123 ++ A ++ L WPGP T ++ + PL T RV P Sbjct: 67 LNEINEQQRAKLESL--------WPGPYTFLVP--HKNRVQPLVHGRFSTVAIRVSPHPR 116 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + L + +G P+ SAN SGQ ++ + + E+ I+DG + S I+++ Sbjct: 117 VQALCKYFGGPIVSTSANYSGQPTVRSAVQA-RRVLGHELDFILDGPVGLFPGPSHIIDL 175 Query: 184 QCEKKVR 190 +++R Sbjct: 176 ASGRQLR 182 >gi|227832891|ref|YP_002834598.1| hypothetical protein cauri_1065 [Corynebacterium aurimucosum ATCC 700975] gi|262182620|ref|ZP_06042041.1| hypothetical protein CaurA7_01395 [Corynebacterium aurimucosum ATCC 700975] gi|227453907|gb|ACP32660.1| hypothetical protein cauri_1065 [Corynebacterium aurimucosum ATCC 700975] Length = 225 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 56/190 (29%), Positives = 91/190 (47%), Gaps = 9/190 (4%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLSLHL 83 + +PT+T+YGL D+ + A+ L K R P+ V VK AS+D + L Sbjct: 31 VVMPTDTLYGLGCDAFDNDAVASLLATKHRGPDMPVPVLVGSWDTVKGLVASLDDTAQTL 90 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLK-TACFRVPCG-FTKKLIETYGHPLAIPSAN 141 + FWPG L++V+ + P + + + T R+P +L+ G P+A+ SAN Sbjct: 91 IEAFWPGGLSIVVPQAPSL---PWNLGDTRGTVMLRMPLHPIAIELLREVG-PMAVSSAN 146 Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIET 201 SGQ T + K + + +DGG +++G STI+++ +LR G L E Sbjct: 147 ISGQTPPTTAIAA-KQQLGKAVTVYLDGGEAEVGKPSTIIDLSGPHPY-LLREGALSAEQ 204 Query: 202 LKRAISVELE 211 + I V E Sbjct: 205 IGEVIGVSAE 214 >gi|120602852|ref|YP_967252.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio vulgaris DP4] gi|120563081|gb|ABM28825.1| translation factor SUA5 [Desulfovibrio vulgaris DP4] Length = 223 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 56/191 (29%), Positives = 89/191 (46%), Gaps = 18/191 (9%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDISMV 70 A L G + PTET +G+ D R+ A+ ++ K+R A+ ++ S + MV Sbjct: 24 DAVRLLAGGGVLVYPTETFFGIGCDVRDARAVDAVFRAKRRQSGMALPVILGDASQLGMV 83 Query: 71 -KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129 + H +V+ LA+ FWPGPL+++ L L+ + A P L Sbjct: 84 TRGHGAVE---AALARDFWPGPLSILCPALPELP-DTLTGGTGRVAVRVSPHPAAMALAL 139 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS-----KIGLESTIVNVQ 184 G PLA SAN SG+ ++ V + + +E+ +DG GL ST+V+V Sbjct: 140 GLGAPLAASSANVSGRAAVVRV-----ADLDRELLSGVDGVYDAPPQPAGGLPSTLVDVL 194 Query: 185 CEKKVRILRPG 195 + +RILR G Sbjct: 195 TDGTLRILREG 205 >gi|328948017|ref|YP_004365354.1| Sua5/YciO/YrdC/YwlC family protein [Treponema succinifaciens DSM 2489] gi|328448341|gb|AEB14057.1| Sua5/YciO/YrdC/YwlC family protein [Treponema succinifaciens DSM 2489] Length = 193 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 59/196 (30%), Positives = 91/196 (46%), Gaps = 16/196 (8%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIR-----RLYEIKKRPAMNPLIC 62 + + R A +FL G +PT+TVYG + + N + ++ +IK R P I Sbjct: 6 NEESARIAADFLKCGKICVLPTDTVYGFSGIAENSLQAKFGTDAKIRKIKGREEKKPFIQ 65 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 VS + K++ + LA+ WPG LT+++ L P S N T FR P Sbjct: 66 LVSSPDEISKYSDFK-IPEQLAQK-WPGALTVIVPLK-----FPFSEKN-ATVAFRCPGD 117 Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 + + +I G P+ S NRSG + +V I E+ LI+D G K L STIV Sbjct: 118 LWLRNVIAECGFPIYSTSVNRSGSPVLDSVCKI-EKEFSNEVDLIVDDGDKKGSLPSTIV 176 Query: 182 NVQCEKKVRILRPGGL 197 ++ ++LR G + Sbjct: 177 LLK-NDGWKVLRQGSV 191 >gi|322368033|ref|ZP_08042602.1| Sua5/YciO/YrdC/YwlC family protein [Haladaptatus paucihalophilus DX253] gi|320552049|gb|EFW93694.1| Sua5/YciO/YrdC/YwlC family protein [Haladaptatus paucihalophilus DX253] Length = 204 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 86/188 (45%), Gaps = 9/188 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + L +A + G + PTETVYGL D+ +PTAI R+++ K R P+ V D+ Sbjct: 12 EDELERAATAMRDGHLVVYPTETVYGLGADALDPTAIERVFDAKGRARDKPISLAVPDVE 71 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCGFTKKL 127 + + L + F PGP+T+ L DI P + T R+P Sbjct: 72 TARNYVRPTERELAFMEAFLPGPVTV---LCEKRDIVPDVLTGGRSRVGVRIPDQPVALS 128 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + + P+ SAN SG+ S+T + L I +ID G G ST+VNV K Sbjct: 129 LLRHVAPITSTSANVSGRGSVTCIDD-LDDEIRDAAECVID-GGETGGTGSTVVNV---K 183 Query: 188 KVRILRPG 195 + ILR G Sbjct: 184 QGEILRRG 191 >gi|312194812|ref|YP_004014873.1| Sua5/YciO/YrdC/YwlC family protein [Frankia sp. EuI1c] gi|311226148|gb|ADP79003.1| Sua5/YciO/YrdC/YwlC family protein [Frankia sp. EuI1c] Length = 218 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 57/199 (28%), Positives = 97/199 (48%), Gaps = 15/199 (7%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP---LICHVSDI 67 L A + G + +PT+TVYGL D+ + +A+R L K R P LI + Sbjct: 15 GLEAAASAVGRGDLVVLPTDTVYGLGADAFDASAVRALLATKNRGRNMPVPVLIGSWRTL 74 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 + H S+ P+ L + FWPG LT+++ + + T R+P Sbjct: 75 DGLVSHVSM-PVR-ELTRAFWPGGLTVIVR--QAPSLRWDLGESRGTVAVRMP--LHPVA 128 Query: 128 IETYGH--PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 I+ G P+A+ SAN SGQ + T + + + +++ + +D G + G+ STIV+ C Sbjct: 129 IDLLGRTGPMAVSSANLSGQPAATTADEAV-AQLGEQVDVYLDAGPATHGVASTIVD--C 185 Query: 186 EKKV-RILRPGGLEIETLK 203 V R++R G +++ TL+ Sbjct: 186 TTDVPRVVRLGAIDLPTLR 204 >gi|289706367|ref|ZP_06502725.1| Sua5/YciO/YrdC/YwlC family protein [Micrococcus luteus SK58] gi|289556862|gb|EFD50195.1| Sua5/YciO/YrdC/YwlC family protein [Micrococcus luteus SK58] Length = 243 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 62/204 (30%), Positives = 96/204 (47%), Gaps = 17/204 (8%) Query: 10 NALRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 NA+ +A E L D G + +PT+TVYG+ D+ +P A+ L K R P ++D Sbjct: 18 NAVARAREVLADRGC-VVLPTDTVYGIGADAFSPLAVAVLLAAKGRSRTMPPPVLIADRR 76 Query: 69 MVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANL----KTACFRVP-CG 122 ++ A P LA+ FWPG LTL+L P T +L T RVP Sbjct: 77 VMSGLAYDVPEEAEALAERFWPGALTLIL------KSQPTLTWDLGETRGTVALRVPDDA 130 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 ++L+ G P+A+ SANR+G + S + + + L +D G + STIV+ Sbjct: 131 VARELLYAVG-PMAVSSANRTG-MDAATTADAARSMLGESVALYLDAGPRESRDPSTIVD 188 Query: 183 VQCEKKVRILRPGGLEIETLKRAI 206 R+ R G + +E L+ + Sbjct: 189 CTV-TPFRVARQGSVPLEELRAVV 211 >gi|261823196|ref|YP_003261302.1| SUA5/yciO/yrdC domain protein [Pectobacterium wasabiae WPP163] gi|261607209|gb|ACX89695.1| SUA5/yciO/yrdC domain protein [Pectobacterium wasabiae WPP163] Length = 189 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 68/147 (46%), Gaps = 7/147 (4%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83 IA PTE V+GL D + A+ RL +K+RP LI +D S + + LS Sbjct: 22 IAYPTEAVFGLGCDPDSEVAVNRLLALKQRPWQKGLILIAADFSQLVPYIDDSALSDEQK 81 Query: 84 AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140 A +F WPGP+T VL TT T + RV K+L + YG PL SA Sbjct: 82 AVMFSTWPGPVTWVLPAKHTTP--QWLTGQFSSLAVRVSGHPLVKELCQRYGKPLVSTSA 139 Query: 141 NRSGQISITNVKHILSSSICKEIPLII 167 N SGQ + + S + P+++ Sbjct: 140 NLSGQPPCRTAQEV-SQQFGDDFPVLV 165 >gi|307212489|gb|EFN88220.1| YrdC domain-containing protein, mitochondrial [Harpegnathos saltator] Length = 243 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/134 (33%), Positives = 71/134 (52%), Gaps = 4/134 (2%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A L IA+PT+T+YGLA + + AI RLY+IKKR P+ +S++ V + A Sbjct: 41 AATLLQQNKVIAVPTDTIYGLACLASSTEAIERLYQIKKRDERKPVAICLSNVKDVTQWA 100 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133 D L L + PGP T++L ++++P ++ RVP F + + + G Sbjct: 101 VTDNLPSCLLEKLLPGPYTIILK--HKSNLNPALNPDIDNIGIRVPSSRFMRSIAKIVG- 157 Query: 134 PLAIPSANRSGQIS 147 P+A+ SAN S + S Sbjct: 158 PIALTSANISNKPS 171 >gi|46579666|ref|YP_010474.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio vulgaris str. Hildenborough] gi|46449081|gb|AAS95733.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio vulgaris str. Hildenborough] gi|311233463|gb|ADP86317.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio vulgaris RCH1] Length = 210 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 57/192 (29%), Positives = 90/192 (46%), Gaps = 20/192 (10%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDISMV 70 A L G + PTET +G+ D R+ A+ ++ K+R A+ ++ S + MV Sbjct: 11 DAVRLLAGGGVLVYPTETFFGIGCDVRDARAVDAVFRAKRRQSGMALPVILGDASQLGMV 70 Query: 71 -KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGFTKKLI 128 + H +V+ LA+ FWPGPL+++ L ++ T RV P L Sbjct: 71 TRGHGAVE---AALARDFWPGPLSILCPALP--ELPDTLTGGTGRVAVRVSPHPAAMALA 125 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS-----KIGLESTIVNV 183 G PLA SAN SG+ ++ V + + +E+ +DG GL ST+V+V Sbjct: 126 LGLGAPLAASSANVSGRAAVVRV-----ADLDRELLSGVDGVYDAPPQPAGGLPSTLVDV 180 Query: 184 QCEKKVRILRPG 195 + +RILR G Sbjct: 181 LTDGTLRILREG 192 >gi|86158113|ref|YP_464898.1| translation factor SUA5 [Anaeromyxobacter dehalogenans 2CP-C] gi|85774624|gb|ABC81461.1| translation factor SUA5 [Anaeromyxobacter dehalogenans 2CP-C] Length = 231 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 77/161 (47%), Gaps = 4/161 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A L +G IA PT+T YG+ D + AI R+Y++K+ P + L D++ + Sbjct: 43 IERAVSALSSGGVIAYPTDTFYGIGCDLFDKRAIERIYQLKQLPRTHELAFICQDLAEIS 102 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130 ++A VD + + + PGP T +L +T + L KT R+P +L+ Sbjct: 103 RYAIVDNAAYRVLRRKVPGPFTFILP--ATRLVPELVLRRQKTVGIRIPDSPIALELVRR 160 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171 GHPL SA R + + + I + + LI+D G Sbjct: 161 LGHPLISTSAARPDGDVLIDARDI-KEELGHGLDLILDAGF 200 >gi|49483139|ref|YP_040363.1| hypothetical protein SAR0941 [Staphylococcus aureus subsp. aureus MRSA252] gi|257425028|ref|ZP_05601455.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257427692|ref|ZP_05604091.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257430327|ref|ZP_05606710.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus 68-397] gi|257433024|ref|ZP_05609384.1| SUA5/yciO/yrdC domain-containing protein [Staphylococcus aureus subsp. aureus E1410] gi|257435928|ref|ZP_05611976.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M876] gi|282903515|ref|ZP_06311406.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus C160] gi|282905293|ref|ZP_06313150.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282908272|ref|ZP_06316103.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910553|ref|ZP_06318357.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282913751|ref|ZP_06321539.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus M899] gi|282916229|ref|ZP_06323991.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp. aureus D139] gi|282923728|ref|ZP_06331406.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp. aureus C101] gi|283770045|ref|ZP_06342937.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp. aureus H19] gi|293500791|ref|ZP_06666642.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp. aureus 58-424] gi|293509744|ref|ZP_06668454.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp. aureus M809] gi|293526330|ref|ZP_06671016.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus M1015] gi|295427461|ref|ZP_06820095.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp. aureus EMRSA16] gi|297590179|ref|ZP_06948818.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus MN8] gi|49241268|emb|CAG39947.1| hypothetical protein SAR0941 [Staphylococcus aureus subsp. aureus MRSA252] gi|257272598|gb|EEV04721.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257275885|gb|EEV07358.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257279104|gb|EEV09715.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus 68-397] gi|257282439|gb|EEV12574.1| SUA5/yciO/yrdC domain-containing protein [Staphylococcus aureus subsp. aureus E1410] gi|257285119|gb|EEV15238.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M876] gi|282314115|gb|EFB44506.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp. aureus C101] gi|282319669|gb|EFB50017.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp. aureus D139] gi|282322363|gb|EFB52686.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus M899] gi|282325945|gb|EFB56253.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282327937|gb|EFB58219.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331700|gb|EFB61212.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282596470|gb|EFC01431.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus C160] gi|283460192|gb|EFC07282.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp. aureus H19] gi|290920872|gb|EFD97934.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus M1015] gi|291095796|gb|EFE26057.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp. aureus 58-424] gi|291467419|gb|EFF09935.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp. aureus M809] gi|295128597|gb|EFG58229.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp. aureus EMRSA16] gi|297576478|gb|EFH95193.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus MN8] gi|312438658|gb|ADQ77729.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus TCH60] gi|315194510|gb|EFU24902.1| hypothetical protein CGSSa00_12335 [Staphylococcus aureus subsp. aureus CGS00] Length = 213 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 54/210 (25%), Positives = 93/210 (44%), Gaps = 31/210 (14%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS---DISMVKKHAS 75 L G P+ +PT+T Y L N I +++E KKR PL + D + + + Sbjct: 18 LQDGFPVIVPTDTNYNLCSLPNNDLCIDKIFEYKKRSKDKPLSLFIDKPEDWKLYGDNQN 77 Query: 76 VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPL 135 + + L ++FWPGPL ++L ++ + ++ ++ C V ++ I P+ Sbjct: 78 TEIVD-KLVEIFWPGPLNIILKNKTSYNYMLNNSDSIAIGC--VQNKTMRRFISYINSPI 134 Query: 136 AIPSANRSG---QISIT----------NVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 AI SAN SG I IT NV+++L S + STI+ Sbjct: 135 AITSANISGTANDILITENEAIKHMGENVRYMLRSQ-----------NKTNYKTSSTIIK 183 Query: 183 VQCEKKVRILRPGGLEIETLKRAISVELEY 212 V + K+ +LR G ++ E +K + + Y Sbjct: 184 V-TDNKIELLREGDIKFEEIKERLGTGIIY 212 >gi|15923968|ref|NP_371502.1| hypothetical protein SAV0978 [Staphylococcus aureus subsp. aureus Mu50] gi|15926567|ref|NP_374100.1| hypothetical protein SA0838 [Staphylococcus aureus subsp. aureus N315] gi|21282589|ref|NP_645677.1| hypothetical protein MW0860 [Staphylococcus aureus subsp. aureus MW2] gi|49485754|ref|YP_042975.1| hypothetical protein SAS0848 [Staphylococcus aureus subsp. aureus MSSA476] gi|57651669|ref|YP_185850.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus COL] gi|87161016|ref|YP_493580.1| hypothetical protein SAUSA300_0880 [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194672|ref|YP_499468.1| hypothetical protein SAOUHSC_00915 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267411|ref|YP_001246354.1| SUA5/yciO/yrdC domain-containing protein [Staphylococcus aureus subsp. aureus JH9] gi|150393464|ref|YP_001316139.1| SUA5/yciO/yrdC domain-containing protein [Staphylococcus aureus subsp. aureus JH1] gi|151221060|ref|YP_001331882.1| hypothetical protein NWMN_0848 [Staphylococcus aureus subsp. aureus str. Newman] gi|156979304|ref|YP_001441563.1| hypothetical protein SAHV_0973 [Staphylococcus aureus subsp. aureus Mu3] gi|161509177|ref|YP_001574836.1| hypothetical protein USA300HOU_0936 [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253316139|ref|ZP_04839352.1| hypothetical protein SauraC_08342 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253731585|ref|ZP_04865750.1| Sua5/YciO/YrdC family protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253732664|ref|ZP_04866829.1| Sua5/YciO/YrdC family protein [Staphylococcus aureus subsp. aureus TCH130] gi|255005767|ref|ZP_05144368.2| hypothetical protein SauraM_04840 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795288|ref|ZP_05644267.1| SUA5/yciO/yrdC domain-containing protein [Staphylococcus aureus A9781] gi|258406937|ref|ZP_05680090.1| SUA5/yciO/yrdC domain-containing protein [Staphylococcus aureus A9763] gi|258421905|ref|ZP_05684826.1| SUA5/yciO/yrdC domain-containing protein [Staphylococcus aureus A9719] gi|258435302|ref|ZP_05689041.1| conserved hypothetical protein [Staphylococcus aureus A9299] gi|258441514|ref|ZP_05690874.1| SUA5/yciO/yrdC domain-containing protein [Staphylococcus aureus A8115] gi|258447213|ref|ZP_05695362.1| conserved hypothetical protein [Staphylococcus aureus A6300] gi|258449973|ref|ZP_05698071.1| SUA5/yciO/yrdC domain-containing protein [Staphylococcus aureus A6224] gi|258452071|ref|ZP_05700087.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|258455486|ref|ZP_05703445.1| conserved hypothetical protein [Staphylococcus aureus A5937] gi|262049328|ref|ZP_06022202.1| hypothetical protein SAD30_1626 [Staphylococcus aureus D30] gi|262052998|ref|ZP_06025175.1| hypothetical protein SA930_1983 [Staphylococcus aureus 930918-3] gi|282894004|ref|ZP_06302235.1| hypothetical protein SGAG_01355 [Staphylococcus aureus A8117] gi|282922257|ref|ZP_06329952.1| conserved hypothetical protein [Staphylococcus aureus A9765] gi|282927200|ref|ZP_06334822.1| conserved hypothetical protein [Staphylococcus aureus A10102] gi|284023904|ref|ZP_06378302.1| hypothetical protein Saura13_04914 [Staphylococcus aureus subsp. aureus 132] gi|294847966|ref|ZP_06788713.1| hypothetical protein SKAG_00021 [Staphylococcus aureus A9754] gi|295405784|ref|ZP_06815593.1| hypothetical protein SMAG_00940 [Staphylococcus aureus A8819] gi|296276110|ref|ZP_06858617.1| hypothetical protein SauraMR_07162 [Staphylococcus aureus subsp. aureus MR1] gi|297208388|ref|ZP_06924818.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297245375|ref|ZP_06929246.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus A8796] gi|300912464|ref|ZP_07129907.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus TCH70] gi|304381469|ref|ZP_07364119.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|13700782|dbj|BAB42078.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus N315] gi|14246747|dbj|BAB57140.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] gi|21204027|dbj|BAB94725.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MW2] gi|49244197|emb|CAG42623.1| hypothetical protein SAS0848 [Staphylococcus aureus subsp. aureus MSSA476] gi|57285855|gb|AAW37949.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus COL] gi|87126990|gb|ABD21504.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202230|gb|ABD30040.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147740480|gb|ABQ48778.1| SUA5/yciO/yrdC, N-terminal domain [Staphylococcus aureus subsp. aureus JH9] gi|149945916|gb|ABR51852.1| SUA5/yciO/yrdC domain protein [Staphylococcus aureus subsp. aureus JH1] gi|150373860|dbj|BAF67120.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156721439|dbj|BAF77856.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|160367986|gb|ABX28957.1| hypothetical protein USA300HOU_0936 [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253724584|gb|EES93313.1| Sua5/YciO/YrdC family protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253729442|gb|EES98171.1| Sua5/YciO/YrdC family protein [Staphylococcus aureus subsp. aureus TCH130] gi|257789260|gb|EEV27600.1| SUA5/yciO/yrdC domain-containing protein [Staphylococcus aureus A9781] gi|257841476|gb|EEV65917.1| SUA5/yciO/yrdC domain-containing protein [Staphylococcus aureus A9763] gi|257842238|gb|EEV66666.1| SUA5/yciO/yrdC domain-containing protein [Staphylococcus aureus A9719] gi|257848963|gb|EEV72946.1| conserved hypothetical protein [Staphylococcus aureus A9299] gi|257852304|gb|EEV76230.1| SUA5/yciO/yrdC domain-containing protein [Staphylococcus aureus A8115] gi|257853961|gb|EEV76915.1| conserved hypothetical protein [Staphylococcus aureus A6300] gi|257856893|gb|EEV79796.1| SUA5/yciO/yrdC domain-containing protein [Staphylococcus aureus A6224] gi|257860286|gb|EEV83118.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|257862304|gb|EEV85073.1| conserved hypothetical protein [Staphylococcus aureus A5937] gi|259159091|gb|EEW44158.1| hypothetical protein SA930_1983 [Staphylococcus aureus 930918-3] gi|259162560|gb|EEW47128.1| hypothetical protein SAD30_1626 [Staphylococcus aureus D30] gi|269940479|emb|CBI48856.1| hypothetical protein SATW20_09770 [Staphylococcus aureus subsp. aureus TW20] gi|282590889|gb|EFB95964.1| conserved hypothetical protein [Staphylococcus aureus A10102] gi|282593547|gb|EFB98541.1| conserved hypothetical protein [Staphylococcus aureus A9765] gi|282763490|gb|EFC03619.1| hypothetical protein SGAG_01355 [Staphylococcus aureus A8117] gi|285816657|gb|ADC37144.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus 04-02981] gi|294824766|gb|EFG41188.1| hypothetical protein SKAG_00021 [Staphylococcus aureus A9754] gi|294969219|gb|EFG45239.1| hypothetical protein SMAG_00940 [Staphylococcus aureus A8819] gi|296887127|gb|EFH26030.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297177678|gb|EFH36928.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus A8796] gi|298694217|gb|ADI97439.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus ED133] gi|300886710|gb|EFK81912.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus TCH70] gi|304339832|gb|EFM05776.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312829374|emb|CBX34216.1| yrdC domain protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315130441|gb|EFT86428.1| hypothetical protein CGSSa03_03433 [Staphylococcus aureus subsp. aureus CGS03] gi|315197330|gb|EFU27668.1| hypothetical protein CGSSa01_00481 [Staphylococcus aureus subsp. aureus CGS01] gi|320141206|gb|EFW33053.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320143263|gb|EFW35053.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus MRSA177] gi|329313645|gb|AEB88058.1| SUA5/yciO/yrdC, N-terminal domain protein [Staphylococcus aureus subsp. aureus T0131] gi|329726220|gb|EGG62690.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus 21189] gi|329728282|gb|EGG64721.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus 21172] gi|329729046|gb|EGG65458.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus 21193] Length = 213 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 54/210 (25%), Positives = 93/210 (44%), Gaps = 31/210 (14%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS---DISMVKKHAS 75 L G P+ +PT+T Y L N I +++E KKR PL + D + + + Sbjct: 18 LQDGFPVIVPTDTNYNLCSLPNNDLCIDKIFEYKKRSKDKPLSLFIDKPEDWKLYGDNQN 77 Query: 76 VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPL 135 + + L ++FWPGPL ++L ++ + ++ ++ C V ++ I P+ Sbjct: 78 TEIVD-KLVEIFWPGPLNIILKNKTSYNYMLNNSDSIAIGC--VQNKTMRRFISYINSPI 134 Query: 136 AIPSANRSG---QISIT----------NVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 AI SAN SG I IT NV+++L S + STI+ Sbjct: 135 AITSANISGTADDILITENEAIKHMGENVRYMLRSQ-----------NKTNYKTSSTIIK 183 Query: 183 VQCEKKVRILRPGGLEIETLKRAISVELEY 212 V + K+ +LR G ++ E +K + + Y Sbjct: 184 V-TDNKIELLREGDIKFEEIKERLGTGIIY 212 >gi|150009964|ref|YP_001304707.1| hypothetical protein BDI_3382 [Parabacteroides distasonis ATCC 8503] gi|255012773|ref|ZP_05284899.1| hypothetical protein B2_02632 [Bacteroides sp. 2_1_7] gi|149938388|gb|ABR45085.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503] Length = 200 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/200 (26%), Positives = 93/200 (46%), Gaps = 18/200 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP------LI 61 + + K + L G + PT+TVY + D+ N A+ ++ ++K +NP +I Sbjct: 11 NQKEIDKVVKVLQDGGLVVYPTDTVYAIGCDALNVRAVEKICQMK---GVNPQKSNLSII 67 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120 C+ D+S + ++A V + L K PGP T + L T+ P N K RVP Sbjct: 68 CY--DLSNLSEYAKVSNAAFKLMKKHLPGPFTFI---LPTSSELPKIYKNRKEVGIRVPD 122 Query: 121 CGFTKKLIETYGHP-LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 T+ L+++ G+P L + ++ I T ++ ++ ++IDGG GLE++ Sbjct: 123 NNITRTLVQSLGNPILTMSIRDKDEVIEYTTDPELIHEKYEHQVDIVIDGGFG--GLEAS 180 Query: 180 IVNVQCEKKVRILRPGGLEI 199 V I+R G E+ Sbjct: 181 TVIDCTTDNFEIVRQGKGEL 200 >gi|262384492|ref|ZP_06077626.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 2_1_33B] gi|301309113|ref|ZP_07215057.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 20_3] gi|262293785|gb|EEY81719.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 2_1_33B] gi|300832795|gb|EFK63421.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 20_3] Length = 186 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 76/165 (46%), Gaps = 31/165 (18%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 ++KACE + AG I PT+T++G+ D+ N A++R+YE+K+R ++ ++ Sbjct: 5 IKKACEVMAAGGIILYPTDTIWGIGCDATNEKAVQRVYELKRRADNKAMLV------LMD 58 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-----STANLKTACFRVPCG---- 122 A +D + + W DL+S +D PL S NL T Sbjct: 59 SEAKLDRYVSDVPDIAW--------DLISVSD-KPLTIIYSSAKNLATNLLGADGSVGIR 109 Query: 123 -----FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKE 162 F+KKL E + PL SAN SG+ S N + S + KE Sbjct: 110 ITNEEFSKKLCERFRKPLVSTSANVSGEPSPANFSEV--SEVIKE 152 >gi|253690146|ref|YP_003019336.1| SUA5/yciO/yrdC domain protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756724|gb|ACT14800.1| SUA5/yciO/yrdC domain protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 189 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/146 (33%), Positives = 67/146 (45%), Gaps = 7/146 (4%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83 IA PTE V+GL D + A+ RL +K+RP LI +D S + + LS Sbjct: 22 IAYPTEAVFGLGCDPDSEVAVNRLLALKQRPWQKGLILIAADFSQLAPYIDDSVLSDEQK 81 Query: 84 AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140 A +F WPGP+T VL TT T + RV K+L + YG PL SA Sbjct: 82 AMMFSTWPGPVTWVLPAKRTT--PQWLTGQFSSLAVRVSDHPLVKELCQRYGKPLVSTSA 139 Query: 141 NRSGQISITNVKHILSSSICKEIPLI 166 N SGQ + + S + P++ Sbjct: 140 NLSGQPPCRTAQEV-SQQFGDDFPVL 164 >gi|260577562|ref|ZP_05845501.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium jeikeium ATCC 43734] gi|258604286|gb|EEW17524.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium jeikeium ATCC 43734] Length = 219 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 56/193 (29%), Positives = 95/193 (49%), Gaps = 13/193 (6%) Query: 21 AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80 G + +PT+TVYG+ D+ + A+ L K R P+ V + ++ V + Sbjct: 26 GGRLVVLPTDTVYGIGCDAFDNEAVAALLRAKGRGPDMPVPVLVPSWTTIQ--GLVREYT 83 Query: 81 LHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLK-TACFRVPCG-FTKKLIETYGHPL 135 ++ KL FWPG L++V+ + P + + + T R+P +L+E G P+ Sbjct: 84 YNMRKLVEAFWPGGLSMVVHQAPSL---PWNLGDTRGTVMLRMPNQPIALELLERTG-PM 139 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 A+ SAN SGQ TNV+ + + ++ IDGG + G+ STIV++ + RILR G Sbjct: 140 AVSSANISGQPPATNVQ-MAEDQLGADVTTYIDGGEAHHGVASTIVDLSSGRP-RILREG 197 Query: 196 GLEIETLKRAISV 208 E + + + Sbjct: 198 AATTERVAEVLGM 210 >gi|227542626|ref|ZP_03972675.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium glucuronolyticum ATCC 51866] gi|227181824|gb|EEI62796.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium glucuronolyticum ATCC 51866] Length = 189 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 94/190 (49%), Gaps = 15/190 (7%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 ++AG + IPT+TVYG+ ++ NP A+ +L + K R P+ V V+ + Sbjct: 1 MEAGRLVVIPTDTVYGIGCNAFNPEAVNKLLQAKHRGPDMPVPVLVGSWDTVRGLSRDYT 60 Query: 79 LSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANL----KTACFRVPCG-FTKKLIETYG 132 ++ L + FWPG L++V+ P T NL + R+P +L++ G Sbjct: 61 RQMNVLIEAFWPGGLSIVVPQ------APSLTWNLGDTNGSVMLRMPLQKLAIELLQKTG 114 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192 P+A+ SAN SGQ N + + + + ++GG ++IG STI+++ + IL Sbjct: 115 -PMAVSSANISGQPPALNAREA-EEQLGNSVSVYLEGGQAEIGTPSTIIDL-TQATPTIL 171 Query: 193 RPGGLEIETL 202 R G + E + Sbjct: 172 REGAIPSEKI 181 >gi|150008371|ref|YP_001303114.1| putative translation factor [Parabacteroides distasonis ATCC 8503] gi|255015619|ref|ZP_05287745.1| putative translation factor [Bacteroides sp. 2_1_7] gi|256839339|ref|ZP_05544848.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|298375013|ref|ZP_06984970.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 3_1_19] gi|149936795|gb|ABR43492.1| conserved hypothetical protein, putative translation factor [Parabacteroides distasonis ATCC 8503] gi|256738269|gb|EEU51594.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|298267513|gb|EFI09169.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 3_1_19] Length = 186 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 76/165 (46%), Gaps = 31/165 (18%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 ++KACE + AG I PT+T++G+ D+ N A++R+YE+K+R ++ ++ Sbjct: 5 IKKACEVMAAGGIILYPTDTIWGIGCDATNEKAVQRVYELKRRTDNKAMLV------LMD 58 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-----STANLKTACFRVPCG---- 122 A +D + + W DL+S +D PL S NL T Sbjct: 59 SEAKLDRYVSDVPDIAW--------DLISVSD-KPLTIIYSSAKNLATNLLGADGSVGIR 109 Query: 123 -----FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKE 162 F+KKL E + PL SAN SG+ S N + S + KE Sbjct: 110 ITNEEFSKKLCERFRKPLVSTSANVSGEPSPANFSEV--SEVIKE 152 >gi|297157197|gb|ADI06909.1| hypothetical protein SBI_03788 [Streptomyces bingchenggensis BCW-1] Length = 215 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 63/208 (30%), Positives = 95/208 (45%), Gaps = 25/208 (12%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 LR+A + G + +PT+TVYG+ D+ N A+ L E K R P V + Sbjct: 15 TGLREAASAVRRGELVVLPTDTVYGIGADAFNAEAVGDLLEAKGRGRNMPTPVLVGSPNT 74 Query: 70 VKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANL----KTACFRVPCG 122 + H V LS L FWPG LTLV P T +L T R+P Sbjct: 75 L--HGLVTDLSEQAWELVDAFWPGALTLV------ARHQPSLTWDLGETHGTVAVRMPLH 126 Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITN---VKHILSSSICKEIPLIIDGGISKIGLES 178 +L+ +G P+A+ SAN +G S + + +L S+ + +DGG + + S Sbjct: 127 PVAIELLNDFG-PMAVSSANLTGHPSPQDCDAAQDMLGDSVS----VYLDGGPTPAAVPS 181 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAI 206 +IV+V + V +LR G L E L+ + Sbjct: 182 SIVDVTSKVPV-LLRAGALSAEQLREVV 208 >gi|213963761|ref|ZP_03392011.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga sputigena Capno] gi|213953641|gb|EEB64973.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga sputigena Capno] Length = 185 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 13/135 (9%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 E L G I PT+TV+GL D+ NP A+ ++++IK+R LI VSDI M++++ + Sbjct: 9 EILKEGKIILYPTDTVWGLGCDATNPEAVAKIFQIKQRSESKSLIILVSDIQMLQQYVTA 68 Query: 77 DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS------TANLKTACFRVPCGFTKKLIET 130 P + P T++ HPL A+ A V F +++I Sbjct: 69 VPSKVLAYLQTLQEPTTIIYS-------HPLHLAKNVIAADDTVAIRVVQDAFCQQMIAD 121 Query: 131 YGHPLAIPSANRSGQ 145 +G P+ SAN SG+ Sbjct: 122 FGKPIVSTSANISGE 136 >gi|239917334|ref|YP_002956892.1| translation factor SUA5 [Micrococcus luteus NCTC 2665] gi|281414186|ref|ZP_06245928.1| translation factor SUA5 [Micrococcus luteus NCTC 2665] gi|239838541|gb|ACS30338.1| translation factor SUA5 [Micrococcus luteus NCTC 2665] Length = 244 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 62/204 (30%), Positives = 96/204 (47%), Gaps = 17/204 (8%) Query: 10 NALRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 NA+ +A E L D G + +PT+TVYG+ D+ +P A+ L K R P ++D Sbjct: 18 NAVARAREVLADRGC-VVLPTDTVYGIGADAFSPLAVAVLLAAKGRGRTMPPPVLIADRR 76 Query: 69 MVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANL----KTACFRVP-CG 122 ++ A P LA+ FWPG LTL+L P T +L T RVP Sbjct: 77 VMAGLAYDVPEEAEALAERFWPGALTLIL------KSQPTLTWDLGETRGTVALRVPDDA 130 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 ++L+ G P+A+ SANR+G + S + + + L +D G + STIV+ Sbjct: 131 VARELLYAVG-PMAVSSANRTG-MDAATTADAARSMLGESVALYLDAGPRESRDPSTIVD 188 Query: 183 VQCEKKVRILRPGGLEIETLKRAI 206 R+ R G + +E L+ + Sbjct: 189 CTV-TPFRVARQGSVPLEELRAVV 211 >gi|281358353|ref|ZP_06244835.1| Sua5/YciO/YrdC/YwlC family protein [Victivallis vadensis ATCC BAA-548] gi|281315180|gb|EFA99211.1| Sua5/YciO/YrdC/YwlC family protein [Victivallis vadensis ATCC BAA-548] Length = 193 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 54/177 (30%), Positives = 87/177 (49%), Gaps = 16/177 (9%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLS 80 G + +PTETVYGL + + A+ ++Y++K R L V D + ++ ++ L Sbjct: 26 GAVLLLPTETVYGLVCRADDAAAVAKIYDLKDRDRSKLLGWFVGDWRKLAEYGVELEGLP 85 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPS 139 LA+ + PGP+T++ T FRVP ++++ G PLA S Sbjct: 86 SELAEKYCPGPITII-----------ARKKAGGTLGFRVPDYPLILEILKLAGVPLAQTS 134 Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGG-ISKIGLESTIVNVQCEKKVRILRPG 195 AN SG + +VK L + + ++ L +DGG I ST+V+ VR+LRPG Sbjct: 135 ANHSGHPNALSVKAAL-AELSGDVELAVDGGDIPPDAQGSTVVDATG-NAVRVLRPG 189 >gi|91791398|ref|YP_561049.1| SUA5/yciO/yrdC-like protein [Shewanella denitrificans OS217] gi|123357281|sp|Q12TA0|RIMN_SHEDO RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|91713400|gb|ABE53326.1| translation factor SUA5 [Shewanella denitrificans OS217] Length = 188 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 73/162 (45%), Gaps = 7/162 (4%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS---L 81 IA PTE VYGL D N AI +L +K+RP LI S + + V L+ L Sbjct: 19 IAYPTEAVYGLGCDPDNDQAIEKLLAVKQRPWQKGLILVASSFEQLLPYVDVAQLTQAQL 78 Query: 82 HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140 A WPGP T V+ + S + + RV ++L ++ PL SA Sbjct: 79 DFAHSKWPGPFTFVMPVKS--HVSNKLRGEFDSIAVRVSAHPIVRELCDSLNKPLVSTSA 136 Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 N +GQ + + IL + +I ++ G + + STI++ Sbjct: 137 NLAGQDPVLTSRQIL-TDFADKIDALVLGDLGQQAQPSTIID 177 >gi|21244532|ref|NP_644114.1| hypothetical protein XAC3808 [Xanthomonas axonopodis pv. citri str. 306] gi|81798965|sp|Q8PG13|RIMN_XANAC RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|21110204|gb|AAM38650.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] Length = 187 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 53/190 (27%), Positives = 84/190 (44%), Gaps = 9/190 (4%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 +TD+ L +A L G IA PTE V+GL D R A+ RL EIK+RP +I S Sbjct: 1 MTDTLDLDRAVAALTQGGVIAYPTEAVWGLGCDPRQRAAVMRLLEIKRRPVEKGVIVVAS 60 Query: 66 DISMVKKHASVDPLSLHLAK---LFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPC 121 + +++ +D L + WPGP T +L + TD P T R+ Sbjct: 61 SVDVLRDWVDIDALEPARRRDVLTSWPGPHTWILPI---TDRAPRWVTGEHDGLAVRISA 117 Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L +G PL SAN +G+ + + L ++ I ++DG + + I Sbjct: 118 HPVVAALCGAWGAPLVSTSANLAGEPPARS-RAALDPALLATIDGVVDGETGALAQPTQI 176 Query: 181 VNVQCEKKVR 190 + + + +R Sbjct: 177 RDARSGQILR 186 >gi|183984067|ref|YP_001852358.1| hypothetical protein MMAR_4096 [Mycobacterium marinum M] gi|183177393|gb|ACC42503.1| conserved hypothetical protein [Mycobacterium marinum M] Length = 216 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 59/203 (29%), Positives = 94/203 (46%), Gaps = 8/203 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 SN + A L AG + +PT+TVYG+ D+ + A+ L K R P+ V Sbjct: 14 SNGIASAAGALKAGRLVVMPTDTVYGIGADAFDSAAVNALLSAKGRGRDMPVGVLVGSWH 73 Query: 69 MVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 ++ P L + FWPG L+LV+ + + + L A+ T R+P + Sbjct: 74 TIEGLVFSMPAGARELIRAFWPGALSLVV-VQAPSLQWDLGNAH-GTVMLRMPLHPVAIE 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+ G P+A+ SAN SGQ +V + + + +DGG + STIV++ Sbjct: 132 LLRQVG-PMAVSSANVSGQPPAVDVADA-RNQFGDLVDVYLDGGPAAQQAASTIVDLTGA 189 Query: 187 KKVRILRPGGLEIETLKRAISVE 209 RILRPG + E + + V+ Sbjct: 190 P--RILRPGPVSAERIADVLGVD 210 >gi|72383532|ref|YP_292887.1| putative translation factor (SUA5) [Prochlorococcus marinus str. NATL2A] gi|72003382|gb|AAZ59184.1| putative translation factor (SUA5) [Prochlorococcus marinus str. NATL2A] Length = 191 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 60/178 (33%), Positives = 86/178 (48%), Gaps = 13/178 (7%) Query: 27 IPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH--VSDISMVKKHASVDPLSLHLA 84 PT+T+ L P ++++ IKKRP+ PLI SD H SL LA Sbjct: 23 FPTDTLPALC---SYPKYSKKIWTIKKRPSSKPLILMGGCSDDLFEFVHPCALEESLQLA 79 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSG 144 K++WPG LT+VL + + AN FRVP + + PLA SAN SG Sbjct: 80 KIYWPGALTMVLPTIG--NFSKYLNANSNAVGFRVPALRIARDLLMQTGPLATTSANISG 137 Query: 145 QISITNVKHILSSSI-CKEIPLIID-GGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200 + T VK + +SI EIP++ S G+ ST+V + K +LRPG + ++ Sbjct: 138 E---TPVKDAMEASIQFPEIPILAPIPWPSSSGMASTVVEWK-NGKWNLLRPGSVVLK 191 >gi|118619167|ref|YP_907499.1| hypothetical protein MUL_3963 [Mycobacterium ulcerans Agy99] gi|118571277|gb|ABL06028.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99] Length = 216 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 59/203 (29%), Positives = 94/203 (46%), Gaps = 8/203 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 SN + A L AG + +PT+TVYG+ D+ + A+ L K R P+ V Sbjct: 14 SNGIASAAGALKAGRLVVMPTDTVYGIGADAFDSAAVNALLSAKGRGRDMPVGVLVGSWH 73 Query: 69 MVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 ++ P L + FWPG L+LV+ + + + L A+ T R+P + Sbjct: 74 TIEGLVFSMPAGARELIRAFWPGALSLVV-VQAPSLQWDLGNAH-GTVMLRMPLHPVAIE 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+ G P+A+ SAN SGQ +V + + + +DGG + STIV++ Sbjct: 132 LLRQVG-PMAVSSANVSGQPPAVDVADA-RNQFGDLVDVYLDGGPAAQQAASTIVDLTGA 189 Query: 187 KKVRILRPGGLEIETLKRAISVE 209 RILRPG + E + + V+ Sbjct: 190 P--RILRPGPVSAERIADVLGVD 210 >gi|289191931|ref|YP_003457872.1| Sua5/YciO/YrdC/YwlC family protein [Methanocaldococcus sp. FS406-22] gi|288938381|gb|ADC69136.1| Sua5/YciO/YrdC/YwlC family protein [Methanocaldococcus sp. FS406-22] Length = 216 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 56/177 (31%), Positives = 87/177 (49%), Gaps = 13/177 (7%) Query: 8 DSNALRKACEFLDA----GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 D N +K +FL G I T+T+YG++ ++ + A++++YEIK+R PL Sbjct: 14 DENERKKVLDFLKEEILNGKIIICGTDTLYGISANALDEKAVKKVYEIKRRDFSKPLSIC 73 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 V D S ++K+A V+ L+ + F PG LT++ L + P A R+P Sbjct: 74 VKDKSEIEKYAYVNDLAKKIIDKFLPGALTII---LKKKPVIPDIVAK-DYVGIRIP--- 126 Query: 124 TKKLI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + +I E PL SAN SG+ S T+V I I K + ++D G K ST Sbjct: 127 DEPIIRELSIVPLTTTSANISGKESPTSVNEI-DEEILKNVDYVVDIGKCKYSKPST 182 >gi|117619223|ref|YP_854792.1| Sua5/YciO/YrdC family protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|212277665|sp|A0KEX6|RIMN_AERHH RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|117560630|gb|ABK37578.1| Sua5/YciO/YrdC family protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 186 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 84/177 (47%), Gaps = 16/177 (9%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL-SLHL 83 IA TE V+GL D + +A+ RL IK+RP LI +D++ ++ + +D L S L Sbjct: 18 IAYATEAVFGLGCDPDSESAVHRLLAIKQRPVEKGLILIAADLAQLQDYIDLDQLTSEQL 77 Query: 84 AKL--FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140 A++ WPGP T ++ S T T T RV + L +G PL SA Sbjct: 78 ARVEASWPGPFTWIMPARSNTPA--WLTGQFTTLAVRVTAHPQVQALCRAFGKPLVSTSA 135 Query: 141 NRSGQI---SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194 N +G+ + ++ +L+S + +P ++G ++ ++ + I+RP Sbjct: 136 NLTGEEPARRVADIGELLASQLAYILP-------GEVGGQANPSEIKDARTGAIIRP 185 >gi|224098296|ref|XP_002195429.1| PREDICTED: hypothetical protein [Taeniopygia guttata] Length = 680 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 56/196 (28%), Positives = 95/196 (48%), Gaps = 11/196 (5%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++ LR E L+ G +PT+TVY LA ++P AI ++Y IK RP P+ +S++ Sbjct: 468 TSGLRTIAELLNTGAVCGVPTDTVYALAASCKHPQAIEKVYRIKDRPQEKPICIFISNLE 527 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPLST--ANLKTACFRVP-C 121 ++ A + PL + +PG + ++ + L + + + RVP Sbjct: 528 QLRAAAPPISPLLWEFMENVYPGGIGCIIQKGEWLKKLGVGAGYSRVGTQDSIMIRVPDL 587 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 LI+ G PLAI SAN SG++ T+ ++S K ++ DG ++ + ST+V Sbjct: 588 TVLVHLIDMTG-PLAITSANPSGEVDSTHHDMVISRLGHKLEGVLCDGESDEV-VASTVV 645 Query: 182 NVQ--CEKKVRILRPG 195 N E + I+R G Sbjct: 646 NCTKIDESGITIVREG 661 >gi|256838758|ref|ZP_05544268.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|262382729|ref|ZP_06075866.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 2_1_33B] gi|301307849|ref|ZP_07213805.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 20_3] gi|256739677|gb|EEU53001.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|262295607|gb|EEY83538.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 2_1_33B] gi|300834192|gb|EFK64806.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 20_3] Length = 200 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 53/200 (26%), Positives = 92/200 (46%), Gaps = 18/200 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP------LI 61 + + K + L G + PT+TVY + D+ N A+ ++ ++K +NP +I Sbjct: 11 NQKEIDKVVKVLQDGGLVVYPTDTVYAIGCDALNVRAVEKICQMK---GVNPQKSNLSII 67 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120 C+ D+S + ++A V + L K PGP T + L T+ P N K RVP Sbjct: 68 CY--DLSNLSEYAKVSNAAFKLMKKHLPGPFTFI---LPTSSELPKIYKNRKEVGIRVPD 122 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 T+ L+++ G+P+ S + I T ++ ++ ++IDGG GLE++ Sbjct: 123 NNITRTLVQSLGNPILTMSIRDEDEVIEYTTDPELIHEKYEHQVDIVIDGGFG--GLEAS 180 Query: 180 IVNVQCEKKVRILRPGGLEI 199 V I+R G E+ Sbjct: 181 TVIDCTTDNFEIVRQGKGEL 200 >gi|255324518|ref|ZP_05365635.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium tuberculostearicum SK141] gi|255298424|gb|EET77724.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium tuberculostearicum SK141] Length = 222 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 55/200 (27%), Positives = 96/200 (48%), Gaps = 9/200 (4%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH- 73 A + +G + +PT+T+YGL D+ + A+ L K+R P+ V V+ Sbjct: 21 AVKAAQSGRLVVMPTDTLYGLGCDAFDNDAVANLLATKQRGPDMPVPVLVGSWDTVRGLV 80 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK-TACFRVPCG-FTKKLIETY 131 AS + L + FWPG L++V+ + P + + + T R+P +L+ Sbjct: 81 ASYTDTARDLVEAFWPGGLSIVVPQAPSL---PWNLGDTRGTVMLRMPLHPIAIELLREV 137 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 G P+A+ SAN SG T + + K + + +DGG + +G STI+++ E+ + Sbjct: 138 G-PMAVSSANISGHQPPTTA-LMAKQQLGKAVTVYLDGGETAVGKPSTIIDLSGERPY-L 194 Query: 192 LRPGGLEIETLKRAISVELE 211 LR G L E + I V+ + Sbjct: 195 LREGALSAEEIGEVIGVDAQ 214 >gi|298374321|ref|ZP_06984279.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 3_1_19] gi|298268689|gb|EFI10344.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 3_1_19] Length = 200 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 53/200 (26%), Positives = 92/200 (46%), Gaps = 18/200 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP------LI 61 + + K + L G + PT+TVY + D+ N A+ ++ ++K +NP +I Sbjct: 11 NQKEIDKVVKVLQDGGLVVYPTDTVYAIGCDALNVRAVEKICQMK---GVNPQKSNLSII 67 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120 C+ D+S + ++A V + L K PGP T + L T+ P N K RVP Sbjct: 68 CY--DLSNLSEYAKVSNAAFKLMKKHLPGPFTFI---LPTSSELPKIYKNRKEVGIRVPD 122 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 T+ L+++ G+P+ S + I T ++ ++ ++IDGG GLE++ Sbjct: 123 NNITRTLVQSLGNPILTMSIRDEDEVIEYTTDPELIHEKYEHQVDIVIDGGFG--GLEAS 180 Query: 180 IVNVQCEKKVRILRPGGLEI 199 V I+R G E+ Sbjct: 181 TVIDCTTDNFEIVRQGKGEL 200 >gi|116749551|ref|YP_846238.1| Sua5/YciO/YrdC/YwlC family protein [Syntrophobacter fumaroxidans MPOB] gi|116698615|gb|ABK17803.1| translation factor SUA5 [Syntrophobacter fumaroxidans MPOB] Length = 204 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 77/164 (46%), Gaps = 11/164 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 ++K E L G IA PT+T YG+ D N +I R+Y +K+R P +D+ + Sbjct: 15 IQKIVEVLANGGIIAYPTDTYYGIGCDLFNKASIERIYLMKRRSPQQPFSFICNDLKNIS 74 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 ++A V + K PGP T VL+ + + + +T RVP +++ Sbjct: 75 EYAQVTNYAYKTMKRLLPGPYTFVLE--GSRLVPKIMLTKRQTVGIRVPDNPICLAIVQE 132 Query: 131 YGHPLAIPSAN--RSGQI--SITNVKHILSSSICKEIPLIIDGG 170 GHP+ SA + QI S +K IL + + LI+DGG Sbjct: 133 LGHPIISTSATNPETNQILASPQEIKEILGHT----LDLIVDGG 172 >gi|330831504|ref|YP_004394456.1| putative ribosome maturation factor rimN [Aeromonas veronii B565] gi|328806640|gb|AEB51839.1| Putative ribosome maturation factor rimN [Aeromonas veronii B565] Length = 186 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/189 (26%), Positives = 84/189 (44%), Gaps = 10/189 (5%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 N +A L IA TE V+GL D + A++RL IK+RP LI +D+ Sbjct: 3 NEFEQAVAALQQEGVIAYATEAVFGLGCDPDSEVAVQRLLAIKQRPVEKGLILIAADVEQ 62 Query: 70 VKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 ++ + + LS L + WPGP T ++ +TT T +T RV + Sbjct: 63 LQDYIDLSQLSGEQLARVEASWPGPFTWIMPARATTPA--WLTGQFETLAVRVTAHPQVQ 120 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 L +G PL SAN +G+ V I + ++ I+ G ++G ++ ++ Sbjct: 121 ALCRAFGKPLVSTSANLTGEEPARRVADI-GERLASKLAYILPG---EVGGQANPSEIKD 176 Query: 186 EKKVRILRP 194 + I+RP Sbjct: 177 ARTGAIIRP 185 >gi|294625227|ref|ZP_06703867.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292600455|gb|EFF44552.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 187 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 52/190 (27%), Positives = 84/190 (44%), Gaps = 9/190 (4%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 +TD+ L +A L G IA PTE V+GL D R A+ RL EIK+RP +I S Sbjct: 1 MTDTVDLGRAVAALTQGGVIAYPTEAVWGLGCDPRQQAAVMRLLEIKRRPVEKGVIVVAS 60 Query: 66 DISMVKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPC 121 ++ +++ + +P WPGP T +L + TD P T R+ Sbjct: 61 NVDVLRDWVDIEALEPARRQDVLTSWPGPHTWILPI---TDRAPRWVTGEHDGLAVRISA 117 Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L +G PL SAN +G+ + + L ++ I ++DG + + I Sbjct: 118 HPVVAALCGAWGAPLVSTSANLAGEPPARS-RAALDPALLATIDGVVDGETGALAQPTQI 176 Query: 181 VNVQCEKKVR 190 + + + +R Sbjct: 177 RDARSGQILR 186 >gi|323443843|gb|EGB01455.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus O46] Length = 213 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 54/210 (25%), Positives = 93/210 (44%), Gaps = 31/210 (14%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS---DISMVKKHAS 75 L G P+ +PT+T Y L N I +++E KKR PL + D + + + Sbjct: 18 LQDGFPVIVPTDTNYNLCSLPNNDLCIDKIFEYKKRSKDKPLSLFIDKPEDWKLYGDNQN 77 Query: 76 VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPL 135 + + L ++FWPGPL ++L ++ + ++ ++ C V ++ I P+ Sbjct: 78 TEIVD-KLVEIFWPGPLNIILKNKTSYNYMLNNSDSIAIGC--VQNKTMRRFISYIKSPI 134 Query: 136 AIPSANRSG---QISIT----------NVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 AI SAN SG I IT NV+++L S + STI+ Sbjct: 135 AITSANISGTADDILITENEAIKHMGENVRYMLRSQ-----------NKTNYKTSSTIIK 183 Query: 183 VQCEKKVRILRPGGLEIETLKRAISVELEY 212 V + K+ +LR G ++ E +K + + Y Sbjct: 184 V-TDNKIELLREGDIKFEEIKERLGTGIIY 212 >gi|226307402|ref|YP_002767362.1| hypothetical protein RER_39150 [Rhodococcus erythropolis PR4] gi|229490001|ref|ZP_04383854.1| Sua5/YciO/YrdC/YwlC family protein [Rhodococcus erythropolis SK121] gi|226186519|dbj|BAH34623.1| conserved hypothetical protein [Rhodococcus erythropolis PR4] gi|229323102|gb|EEN88870.1| Sua5/YciO/YrdC/YwlC family protein [Rhodococcus erythropolis SK121] Length = 220 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 57/196 (29%), Positives = 92/196 (46%), Gaps = 7/196 (3%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLSLHL 83 + +PT+T+YGLA D+ + A+ L K R P+ V + + SV P + L Sbjct: 30 VVLPTDTLYGLAADAFDSEAVTSLLRAKGRGRDMPVPVLVGSWNTIDGLVYSVRPQARDL 89 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142 + FWPG L+LV++ + T T R+P +L+ G PLA+ SAN Sbjct: 90 IRAFWPGGLSLVVEQAPSLAWDLGDTRG--TVMLRMPLHPVALELLRDVG-PLAVSSANI 146 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202 SG+ T V+ + + +DGG ++ + STIV++ RILR G + E++ Sbjct: 147 SGRPPATTVEEA-RDQLGGSASVYLDGGKAEHAVASTIVDLTGNSP-RILRVGAVSAESI 204 Query: 203 KRAISVELEYCVDETS 218 + E V+ S Sbjct: 205 AEVLGTSPESLVEGVS 220 >gi|220913095|ref|YP_002488404.1| Sua5/YciO/YrdC/YwlC family protein [Arthrobacter chlorophenolicus A6] gi|219859973|gb|ACL40315.1| Sua5/YciO/YrdC/YwlC family protein [Arthrobacter chlorophenolicus A6] Length = 266 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 52/196 (26%), Positives = 86/196 (43%), Gaps = 27/196 (13%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKR----------PAMNPLICHVSDISMVKKHA 74 + +PT+TVYG+A D+ +P A+ L K R P +N L +DIS + Sbjct: 30 VVLPTDTVYGIAADAFSPQAVTMLLVSKGRSRTMPPPVLIPRINALDGLATDISAEAR-- 87 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHP 134 LA+ FWPG LTL+ + D T T R+P + + T P Sbjct: 88 -------KLAEAFWPGGLTLIFHAQPSLDWDLGETKG--TVALRMPADEIAQELLTLTGP 138 Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI----SKIGLESTIVNVQCEKKVR 190 LA+ SANR+G + + + ++GG + STIV+ ++R Sbjct: 139 LAVSSANRTGHAPAQTAA-AAREQLADSVEVYLEGGFRPAEGADAVPSTIVDATG-PRLR 196 Query: 191 ILRPGGLEIETLKRAI 206 ++R G + ++ L+ + Sbjct: 197 VVRNGAVSLDQLREHV 212 >gi|120596862|ref|YP_961436.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella sp. W3-18-1] gi|146291140|ref|YP_001181564.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella putrefaciens CN-32] gi|212288225|sp|A4Y1D2|RIMN_SHEPC RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|212288228|sp|A1RDY7|RIMN_SHESW RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|120556955|gb|ABM22882.1| translation factor SUA5 [Shewanella sp. W3-18-1] gi|145562830|gb|ABP73765.1| translation factor SUA5 [Shewanella putrefaciens CN-32] Length = 188 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 55/181 (30%), Positives = 79/181 (43%), Gaps = 11/181 (6%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L+ G+ IA PTE VYGL D N TAI++L +K+RP LI SD + + Sbjct: 14 LNGGV-IAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWQKGLILVASDFQQLLAYVDESQ 72 Query: 79 LS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHP 134 L+ L A WPGP T V+ + + + RV + L P Sbjct: 73 LTAEQLEFAFSKWPGPFTFVMPI--KAQVSKYLCGEFDSIAVRVSAHAGVQALCRALNKP 130 Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194 L SAN +G+ IL+ K I ++ G + + STI++ + K ILR Sbjct: 131 LVSTSANLAGEDPALTAAEILADFTGK-IDALVLGELGEQRQPSTIIDARSGK---ILRN 186 Query: 195 G 195 G Sbjct: 187 G 187 >gi|319424446|gb|ADV52520.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella putrefaciens 200] Length = 188 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 55/181 (30%), Positives = 79/181 (43%), Gaps = 11/181 (6%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L+ G+ IA PTE VYGL D N TAI++L +K+RP LI SD + + Sbjct: 14 LNGGV-IAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWQKGLILVASDFQQLLAYVDESQ 72 Query: 79 LS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHP 134 L+ L A WPGP T V+ + + + RV + L P Sbjct: 73 LTAEQLEFAFSKWPGPFTFVMPI--KAQVSKYLCGEFDSIAVRVSAHAGVQALCRALNKP 130 Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194 L SAN +G+ IL+ K I ++ G + + STI++ + K ILR Sbjct: 131 LVSTSANLAGEDPALTAAEILADFTGK-IDALVLGELGEQHQPSTIIDARSGK---ILRN 186 Query: 195 G 195 G Sbjct: 187 G 187 >gi|300858258|ref|YP_003783241.1| hypothetical protein cpfrc_00840 [Corynebacterium pseudotuberculosis FRC41] gi|300685712|gb|ADK28634.1| hypothetical protein cpfrc_00840 [Corynebacterium pseudotuberculosis FRC41] gi|302205979|gb|ADL10321.1| Putative translation factor SUA5 [Corynebacterium pseudotuberculosis C231] gi|302330532|gb|ADL20726.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium pseudotuberculosis 1002] gi|308276214|gb|ADO26113.1| Putative translation factor SUA5 [Corynebacterium pseudotuberculosis I19] Length = 216 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 55/204 (26%), Positives = 99/204 (48%), Gaps = 9/204 (4%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR-PAMN-PLICHVSDIS 68 AL+ A + + G + +PT+T+YG+ D+ + A+ +L K+R P M P++ D + Sbjct: 16 ALKVASDAVKDGRLVVMPTDTLYGIGCDAFDNNAVAKLLTTKQRGPDMPVPVLVGSWDTA 75 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 H+ + + L + FWPG L++V+ + + T T R+P +L Sbjct: 76 RGLVHSYSEQMR-TLIEAFWPGALSIVVAQAPSLQWNLGDTRG--TVMLRMPLHPVAIEL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G P+A+ SAN SGQ T + + +DGG + +G STI+++ Sbjct: 133 LRETG-PMAVSSANVSGQKPATTALAA-QEQLGDAVSAYLDGGATPVGTASTIIDLSGPS 190 Query: 188 KVRILRPGGLEIETLKRAISVELE 211 RILR G + E + + +++E Sbjct: 191 P-RILREGAISAERIAEVLDLDVE 213 >gi|283780357|ref|YP_003371112.1| Protein-tyrosine phosphatase, low molecular weight [Pirellula staleyi DSM 6068] gi|283438810|gb|ADB17252.1| Protein-tyrosine phosphatase, low molecular weight [Pirellula staleyi DSM 6068] Length = 389 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 71/261 (27%), Positives = 117/261 (44%), Gaps = 27/261 (10%) Query: 2 QIMSITDSNALR----KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 Q++ + +S+ R +A + L G +A PTETVY A + NP A+ RL E++ A Sbjct: 4 QVIDVQNSDDPRDVVHRAVQALVEGRVVAFPTETVYVAAASALNPAAVGRLLELRGGSAD 63 Query: 58 NPL-ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTAN----- 111 PL I S + ++ L + LA+ WPGP+TL L D HP S Sbjct: 64 IPLSIALRSTDDALDYVPTIPSLGMRLARRCWPGPMTLEL-----ADAHPDSVVQRLPPS 118 Query: 112 -------LKTACFRVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEI 163 L RVP ++++ PL I +A +G V+ ++ + + Sbjct: 119 VKKVISPLGNVRLRVPAHALLSEVLKLLAGPLVITAARPAGASDPITVEDVVQKA-ANHV 177 Query: 164 PLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCVDET-STPQ 221 L+++ G + G +++V V + ILRPG + L+R S + + C T +P Sbjct: 178 DLVLNHGRCRFGQRASVVRV-LNSSLEILRPGVISEANLRRLSSWMAVMVCTGNTCRSPM 236 Query: 222 SPGMLKSHYAPRSQVRLRAIH 242 + +LK A QV + A+ Sbjct: 237 AEALLKKRLADHLQVPIDALE 257 >gi|282857672|ref|ZP_06266885.1| SUA5 protein [Pyramidobacter piscolens W5455] gi|282584496|gb|EFB89851.1| SUA5 protein [Pyramidobacter piscolens W5455] Length = 175 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 56/184 (30%), Positives = 93/184 (50%), Gaps = 15/184 (8%) Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200 NRSG+ S TN + + + I +I+D G ++G+EST+++V V +LRPGG+ +E Sbjct: 1 NRSGRPSPTNAQTV-AEDIGSAAAMILDAGECRVGVESTVLDVSAAVPV-LLRPGGVSME 58 Query: 201 TLKRAIS-VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALI---RFGNVP 256 L+ + V L V+E +SPG HYAP +VR+ P A RF + Sbjct: 59 ELREFLGEVALPVGVNELK--RSPGTRYRHYAPAVEVRV----WEPGAAFAWPERFTYMG 112 Query: 257 IKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLE 316 + E + + + G + A LF+ ++ + G +A P+ G+G A+ +R+ Sbjct: 113 VAASEK-LPARQIHFDG-FEAYAHGLFSALRELEKDGLPIVA-QWPPSGGIGRALRDRIS 169 Query: 317 RAAA 320 RAA Sbjct: 170 RAAG 173 >gi|90413785|ref|ZP_01221773.1| Putative Sua5/YciO/YrdC family protein [Photobacterium profundum 3TCK] gi|90325254|gb|EAS41751.1| Putative Sua5/YciO/YrdC family protein [Photobacterium profundum 3TCK] Length = 192 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 69/141 (48%), Gaps = 6/141 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + L++ L +G IA PTE V+G+ D + AI +L +K+RP LI ++ Sbjct: 7 DMDNLQQVVSALQSGEVIAYPTEGVFGVGCDPDHSQAIEKLLALKQRPIEKGLILIAANY 66 Query: 68 SMVKKHASVDPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 ++ + LS L K+F WPGP+T V+ + + PL T + RV Sbjct: 67 QQLQPYIDDTQLSDLQKQKIFSTWPGPVTWVMPV--KKGVSPLLTGKFTSIAVRVSDHPL 124 Query: 124 TKKLIETYGHPLAIPSANRSG 144 +KL +G P+ SAN +G Sbjct: 125 VQKLCHQFGKPITSTSANLTG 145 >gi|225620696|ref|YP_002721954.1| Sua5/YciO/YrdC/YwlC family protein [Brachyspira hyodysenteriae WA1] gi|225215516|gb|ACN84250.1| Sua5/YciO/YrdC/YwlC family protein [Brachyspira hyodysenteriae WA1] Length = 198 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 53/181 (29%), Positives = 88/181 (48%), Gaps = 9/181 (4%) Query: 20 DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL 79 D G+ ++ PT+TVYG+ D+ N A+ R+Y IK R PL+ D+ VKK + D Sbjct: 26 DGGIVVS-PTDTVYGMLADAFNTDAVNRIYTIKDREKNKPLLILSKDLESVKKFS--DKE 82 Query: 80 SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPS 139 + K PG LT ++ LL ++ + T R+P ++I +PL PS Sbjct: 83 VPDIIKNNIPGELTFIVPLLE--ELKNKFSYLKDTVALRIPNDKYMQIILKGTNPLVAPS 140 Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEI 199 AN SG I + L+ + LI++ G+ + + ST+ + K +LR G + + Sbjct: 141 ANPSGYGVILDGNE-LAELYKDKADLIVNAGVLENKMPSTLYDCLANK---VLRQGSVHL 196 Query: 200 E 200 + Sbjct: 197 D 197 >gi|163840180|ref|YP_001624585.1| Sua5/YciO/YrdC/YwlC family protein [Renibacterium salmoninarum ATCC 33209] gi|162953656|gb|ABY23171.1| Sua5/YciO/YrdC/YwlC family protein [Renibacterium salmoninarum ATCC 33209] Length = 265 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 56/200 (28%), Positives = 99/200 (49%), Gaps = 23/200 (11%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRP-AMNPLICHVSDISMVKKHASVDPLSLH- 82 I +PT+TVYG+A D+ +P A+ L K R +M P + ++++ ++D L++ Sbjct: 31 IVMPTDTVYGIAADAFSPVAVATLLAAKGRGRSMPPPV-------LIQRVQTMDGLAVDI 83 Query: 83 ------LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLA 136 LA+ FWPG LTL+ + D + T R+P + T PLA Sbjct: 84 SEEARKLAEAFWPGGLTLIFHAQPSLDWD--LGDSFGTVALRMPDDKLVLDLLTLTGPLA 141 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI-GLE---STIVNVQCEKKVRIL 192 + SANR+GQ + V + + + + + G + G E STIV+ + ++R++ Sbjct: 142 VSSANRTGQPTARTVAQA-REQLGEVVEVYLGEGERPLDGAEVQPSTIVDATGD-RLRVV 199 Query: 193 RPGGLEIETLKRAISVELEY 212 RPG + I+ L+ + L++ Sbjct: 200 RPGVITIDQLRGVVPSVLDF 219 >gi|291298831|ref|YP_003510109.1| Sua5/YciO/YrdC/YwlC family protein [Stackebrandtia nassauensis DSM 44728] gi|290568051|gb|ADD41016.1| Sua5/YciO/YrdC/YwlC family protein [Stackebrandtia nassauensis DSM 44728] Length = 217 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 60/201 (29%), Positives = 96/201 (47%), Gaps = 13/201 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP-AMNPLICHVSDI 67 +A++ A +++G + +PT+TVYGL D+ A+ L KKR M P + S Sbjct: 13 DSAIKAAVSAVESGDLVVMPTDTVYGLGADAFKSYAVDALLRTKKRGRDMVPPVLVGSRK 72 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 ++ SV + L FWPGPLT+V+ S T L + T R+P Sbjct: 73 ALDGLTISVPSMIKDLVAAFWPGPLTVVMH-YSPTLAWDLGDDD-GTVAVRMPLHPVALE 130 Query: 128 IETYGHPLAIPSANRSGQ---ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + P+A+ SAN++GQ + T+ K L ++ + ++ G S STIV+ Sbjct: 131 VLAETGPMAVSSANKTGQPPAATATDAKEQLGYAVQ----VYLEAGPSPDTKPSTIVD-- 184 Query: 185 CEKKV-RILRPGGLEIETLKR 204 C V ++LR G L +E L+ Sbjct: 185 CTGDVPKVLRQGALSLERLRE 205 >gi|227503860|ref|ZP_03933909.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium striatum ATCC 6940] gi|227199483|gb|EEI79531.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium striatum ATCC 6940] Length = 222 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 55/190 (28%), Positives = 90/190 (47%), Gaps = 9/190 (4%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLSLHL 83 + +PT+T+YGL D+ + A+ L K R P+ V ++ AS + L Sbjct: 31 VVMPTDTLYGLGCDAFDNDAVASLLATKHRGPDMPVPVLVGSWDTIRGLVASYTDTARTL 90 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLK-TACFRVPCG-FTKKLIETYGHPLAIPSAN 141 + FWPG L++V+ + P + + + T R+P +L+ G P+A+ SAN Sbjct: 91 VEAFWPGGLSIVVPQAPSL---PWNLGDTRGTVMLRMPLHPIAIELLREVG-PMAVSSAN 146 Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIET 201 SGQ T + K + + +DGG + IG STI+++ E+ +LR G L E Sbjct: 147 ISGQTPPTTALEA-KQQLGKAVTVYLDGGETAIGKPSTIIDLSGERPY-LLREGALSAEE 204 Query: 202 LKRAISVELE 211 + I V E Sbjct: 205 IAAVIGVTAE 214 >gi|313157954|gb|EFR57360.1| Sua5/YciO/YrdC/YwlC family protein [Alistipes sp. HGB5] Length = 200 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 49/191 (25%), Positives = 90/191 (47%), Gaps = 7/191 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 LRK + L+ G I PT++VY R+P AI RL +K + A +++ Sbjct: 15 LRKVVDALEDGGIIIYPTDSVYAFGCSLRSPKAIERLRRMKGKDA-EAFTVVFENLAQAA 73 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI-ET 130 ++ VD + H+ K PGP T V L +++ + + +T R+P ++I Sbjct: 74 EYCRVDNAAFHILKRNLPGPFTFV--LTASSGMPDKALEKRRTIGIRIPGNAVPRVIVAA 131 Query: 131 YGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL S + + T ++ +++ L+IDGG+ + +T+V++ ++ Sbjct: 132 LGCPLITTSVKDDDEVVEYTTDPELIHERYGRDVALVIDGGVGD-NVPTTVVDLTGDEP- 189 Query: 190 RILRPGGLEIE 200 ILR G E++ Sbjct: 190 EILREGKGELQ 200 >gi|261250597|ref|ZP_05943172.1| YrdC family protein [Vibrio orientalis CIP 102891] gi|260939166|gb|EEX95153.1| YrdC family protein [Vibrio orientalis CIP 102891] Length = 185 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 65/138 (47%), Gaps = 6/138 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +A L G IA PTE V+G+ D NP AI++L E+K+RP LI ++ + Sbjct: 4 FERALSALKQGEVIAYPTEGVFGVGCDPDNPNAIKKLLELKQRPVEKGLILIAANYQQLL 63 Query: 72 KHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + LS L + WPGP+T ++ S+ + + + RV +K+ Sbjct: 64 PYIDQQALSAEQLERVQQTWPGPVTWIMP--SSDKVSNWVSGQYDSIAVRVTDHPLVQKM 121 Query: 128 IETYGHPLAIPSANRSGQ 145 +G PL SAN +G+ Sbjct: 122 CNAFGKPLTSTSANLTGE 139 >gi|134102725|ref|YP_001108386.1| SUA5/YciO/YrdC/YwlC [Saccharopolyspora erythraea NRRL 2338] gi|291007818|ref|ZP_06565791.1| SUA5/YciO/YrdC/YwlC [Saccharopolyspora erythraea NRRL 2338] gi|133915348|emb|CAM05461.1| SUA5/YciO/YrdC/YwlC [Saccharopolyspora erythraea NRRL 2338] Length = 216 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 57/199 (28%), Positives = 93/199 (46%), Gaps = 27/199 (13%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLSLHL 83 + +PT+TVYG+ D+ + A+ L K R P+ V S V SV + L Sbjct: 30 VVLPTDTVYGIGADAFDSNAVASLLAAKGRGPDMPVPVLVGSWSTVDGLVMSVPQQARAL 89 Query: 84 AKLFWPGPLTLVL--------DLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPL 135 + FWPG L++VL DL +T T NL+ V +++ P+ Sbjct: 90 IEAFWPGGLSIVLPQAPSLSWDLGNTR-----GTVNLRMPLHPVALDLLREV-----GPM 139 Query: 136 AIPSANRSGQ---ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192 A+ SANR+G + T + L S+ + +DGG S + STIV++ + + R+L Sbjct: 140 AVSSANRTGHPPASTATEAREQLGDSVS----VYLDGGPSGEPVASTIVDL-TQAQPRVL 194 Query: 193 RPGGLEIETLKRAISVELE 211 R G + ++ L + V+ E Sbjct: 195 REGAVGLDDLADVLGVDAE 213 >gi|225851215|ref|YP_002731449.1| Sua5/YciO/YrdC/YwlC family protein [Persephonella marina EX-H1] gi|225646672|gb|ACO04858.1| Sua5/YciO/YrdC/YwlC family protein [Persephonella marina EX-H1] Length = 203 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 56/207 (27%), Positives = 96/207 (46%), Gaps = 7/207 (3%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 + I S + +A E+L G + PT+T+YG+ D+ N A+ ++Y +K R P+I Sbjct: 1 MTDIKVSKNIEEAAEYLKKGRIVIAPTDTLYGILADALNKDAVEKVYRLKGRTPTKPVIV 60 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC-FRVP- 120 + + + V P S KL +T+V+DL K + FR+P Sbjct: 61 LIPQLEFLDLFC-VKP-SEREKKLLIHRGITVVIDLQDDCKERFFYLHRGKGSLGFRIPD 118 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 K++E PL PSAN G+ ++ +S K + L IDGG K ST+ Sbjct: 119 SDQLIKVMERIERPLIAPSANPEGKKPAEDIDQAVSYFGSK-VDLYIDGGTVKGKEPSTV 177 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAIS 207 V + + + ++R G ++ + +KR + Sbjct: 178 VKI--DNGITVIREGSIKKDEIKRLLE 202 >gi|162447073|ref|YP_001620205.1| dsRNA binding, YrdC domain-containing protein [Acholeplasma laidlawii PG-8A] gi|161985180|gb|ABX80829.1| dsRNA binding, YrdC domain protein [Acholeplasma laidlawii PG-8A] Length = 182 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 67/132 (50%), Gaps = 6/132 (4%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 + PT+TVYGL + ++++YEIK R P+ +S++ VK+ A +L +A Sbjct: 5 LIFPTDTVYGLGTPYLDKEGLKQIYEIKGRDFNKPIAILISNLEQVKEIAKASDNALKVA 64 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANRS 143 FWPG LTL+ + ++D + + KT R+P KLI+ G PL S N S Sbjct: 65 SKFWPGGLTLIFE---SSDAYYQQSGE-KTIGLRMPNHKLALKLIDELG-PLKTTSVNYS 119 Query: 144 GQISITNVKHIL 155 Q + + I+ Sbjct: 120 NQPPLNDYDAIM 131 >gi|24371637|ref|NP_715679.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella oneidensis MR-1] gi|81464359|sp|Q8EKQ3|RIMN_SHEON RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|24345396|gb|AAN53124.1|AE015455_5 Sua5/YciO/YrdC/YwlC family protein [Shewanella oneidensis MR-1] Length = 188 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 54/176 (30%), Positives = 82/176 (46%), Gaps = 8/176 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L+ G+ IA PTE VYGL D N TAI++L +K+RP LI S+ S + + Sbjct: 14 LNGGV-IAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWQKGLILVASEFSQLLAYVDESQ 72 Query: 79 LS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHP 134 L+ L LA WPGP T V+ + + + RV + L + G P Sbjct: 73 LTDEQLELAFSKWPGPFTFVMPI--KPHVSRYLCGEFDSIAVRVSAHEGVRALCQALGKP 130 Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 L SAN +G+ + IL+ K I ++ G + + STI++ + K +R Sbjct: 131 LVSTSANLAGEDPALSGDEILNVFEGK-IDALVLGQLGEQRQPSTIIDARSGKILR 185 >gi|313203740|ref|YP_004042397.1| translation factor sua5 [Paludibacter propionicigenes WB4] gi|312443056|gb|ADQ79412.1| translation factor SUA5 [Paludibacter propionicigenes WB4] Length = 201 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 101/208 (48%), Gaps = 18/208 (8%) Query: 3 IMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK---RP 55 ++ I D+N +R+ E L G I PT+ VY + N + + + ++K+ R Sbjct: 2 LIKIYDTNPNPIEIRRVVEVLRKGGIIIFPTDGVYAFGCNIFNASGVEFIAKLKEHDMRK 61 Query: 56 AMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115 A ICH ++S + ++A +D +S L K PGP T +L+ S P N KT Sbjct: 62 ANLSFICH--EMSQISEYAKMDDVSFKLMKRNLPGPFTFILNGSSKL---PKLFKNKKTV 116 Query: 116 CFRVPC-GFTKKLIETYGHPLAIPSANRSGQIS--ITNVKHILSSSICKEIPLIIDGGIS 172 R+P +++ G+PL S + + IT+ ++ ++ ++IDGG+ Sbjct: 117 GIRMPQNNIALEIVRELGNPLMTSSIFTDEKTTEYITD-PELIEEKYGHQVDMVIDGGMG 175 Query: 173 KIGLESTIVNVQCEKKVRILRPGGLEIE 200 + + STIV+ ++ V I+R G E++ Sbjct: 176 GL-IHSTIVDCTEDEPV-IIRQGAGELQ 201 >gi|258652314|ref|YP_003201470.1| Sua5/YciO/YrdC/YwlC family protein [Nakamurella multipartita DSM 44233] gi|258555539|gb|ACV78481.1| Sua5/YciO/YrdC/YwlC family protein [Nakamurella multipartita DSM 44233] Length = 216 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 94/185 (50%), Gaps = 7/185 (3%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLSLHL 83 + +PT+TVYG+ D+ N A+R L K R P+ V + + +V P++ L Sbjct: 29 VVLPTDTVYGIGADAFNAAAVRALLAAKGRGPDMPVPVLVGSWTTIDGLVMAVPPVARTL 88 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANR 142 + FWPG L+LV++ + L A T R+P L+ G P+A+ SANR Sbjct: 89 VEAFWPGGLSLVVEHAPSLQWD-LGDAK-GTVMLRMPLHPVAIDLLRLVG-PMAVSSANR 145 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202 SG T + + +++ + +DGG S IG+ ST+V+V E R+LR G + ++ L Sbjct: 146 SGNPPATTAADA-QAQLGEQVSVYLDGGPSPIGVASTVVDVTGEIP-RVLRVGAVPLDRL 203 Query: 203 KRAIS 207 + + Sbjct: 204 RDVVG 208 >gi|56755217|gb|AAW25788.1| SJCHGC02454 protein [Schistosoma japonicum] Length = 268 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 59/205 (28%), Positives = 90/205 (43%), Gaps = 36/205 (17%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 IA+PT+TVYGLA N +I R+ IK R P+ + +S + + L Sbjct: 45 IALPTDTVYGLACSVYNTESIERIRHIKGRSETKPMAICLDQVSHISHWCDTKNIPTGLL 104 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLS---TANLKTACFRVP-CGFTKKLIETY--------- 131 PGP+T++L PL+ + R+P GF +KLI Sbjct: 105 SDLLPGPVTVLLPRFPDKLQDPLNCHLNPGERRVGIRIPDSGFIRKLISALHEQTKLSST 164 Query: 132 ---------GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG-----ISKIGLE 177 GHPL + SAN SGQ S ++ S I I LI++GG + + L+ Sbjct: 165 SGNDEYSGGGHPLVLTSANLSGQPSAIQIEEF--SEIWPSIDLIVNGGPIQPSLPSVNLD 222 Query: 178 -----STIVNV-QCEKKV-RILRPG 195 STI+++ C+K + ++R G Sbjct: 223 YNRSGSTIIDLCDCDKSIYYVVRSG 247 >gi|307132802|ref|YP_003884818.1| tRNA (ANN) t(6)A37 threonylcarbamoyladenosine biosynthesis protein [Dickeya dadantii 3937] gi|306530331|gb|ADN00262.1| tRNA (ANN) t(6)A37 threonylcarbamoyladenosine biosynthesis protein [Dickeya dadantii 3937] Length = 190 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 44/125 (35%), Positives = 61/125 (48%), Gaps = 6/125 (4%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83 IA PTE V+GL D + TA+ RL +K+RP LI +D ++ + + LS + Sbjct: 23 IAYPTEAVFGLGCDPDSETAVERLLALKQRPREKGLILIAADFQQLEPYVDISALSDIQR 82 Query: 84 AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140 +F WPGP+T VL + T T + RV K+L +G PL SA Sbjct: 83 QTIFASWPGPVTWVLPAKTVT--PDWLTGRFTSLAVRVSDHPLVKQLCLVFGKPLVSTSA 140 Query: 141 NRSGQ 145 N SGQ Sbjct: 141 NLSGQ 145 >gi|288927572|ref|ZP_06421419.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella sp. oral taxon 317 str. F0108] gi|288330406|gb|EFC68990.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella sp. oral taxon 317 str. F0108] Length = 189 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 77/151 (50%), Gaps = 5/151 (3%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 +T ++KA E L G I PT+T++G+ D+ N A+ ++Y+IK+R +IC V Sbjct: 1 MTREEDIKKAVEVLRKGGIILYPTDTIWGIGCDATNAEAVAKVYQIKQRDDSKAMICLVD 60 Query: 66 DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 + ++++ +V ++ L +L P TL+LD ++ P A + RV F Sbjct: 61 SATRMQRYVRNVPNVAWDLVELA-TKPTTLILD--DAVNLAPNLIAEDGSVALRVTDEPF 117 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHI 154 +K+L + L SAN SGQ + N K I Sbjct: 118 SKELCYRFQKALVSTSANISGQPAAQNYKDI 148 >gi|297619997|ref|YP_003708102.1| Sua5/YciO/YrdC/YwlC family protein [Methanococcus voltae A3] gi|297378974|gb|ADI37129.1| Sua5/YciO/YrdC/YwlC family protein [Methanococcus voltae A3] Length = 209 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 51/203 (25%), Positives = 95/203 (46%), Gaps = 18/203 (8%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 L A ++L G PT+T+YG+ + + + R+Y+IK R P + S + Sbjct: 11 TLNDAKKYLKNGEIALCPTDTIYGICGYALDKNVVDRIYKIKNRDESKPFSISLQKKSDI 70 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC-----FRVPCGFTK 125 +K+A V+ ++ L F PGP+TL+L P + C R+P +K Sbjct: 71 QKYAKVNNVAKKLINKFLPGPITLIL---------PKKESIPDYICKDYVGIRIPD--SK 119 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 ++E P+ SAN SG+ S ++ + I + +IID G + STIV + Sbjct: 120 IILELSEIPITSTSANVSGRPSSYSISK-MDKEILNSVDIIIDDGDCEYKKPSTIVKI-I 177 Query: 186 EKKVRILRPGGLEIETLKRAISV 208 + + ++R G + + + + +++ Sbjct: 178 DNDIELIREGSISFDNILKELNL 200 >gi|304382269|ref|ZP_07364776.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella marshii DSM 16973] gi|304336626|gb|EFM02855.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella marshii DSM 16973] Length = 189 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 74/147 (50%), Gaps = 5/147 (3%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV- 64 +T +R+A E L AG I PT+TV+G+ D+ N A+ R+Y IK+R LIC V Sbjct: 1 MTQQEDIRQAVEVLKAGGVILYPTDTVWGIGCDATNKEAVARIYRIKQREDSKALICLVD 60 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GF 123 SD + + V P++ L + P T++LD ++ P A+ + R+ F Sbjct: 61 SDARLQRYVRDVPPVAWDLLDVA-EKPTTVILD--GAVNLAPNLIADDGSIALRITKEAF 117 Query: 124 TKKLIETYGHPLAIPSANRSGQISITN 150 +++L + + SAN SGQ + N Sbjct: 118 SRELCYRFQKAIVSTSANISGQPAAQN 144 >gi|227548002|ref|ZP_03978051.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium lipophiloflavum DSM 44291] gi|227079908|gb|EEI17871.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium lipophiloflavum DSM 44291] Length = 219 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 53/209 (25%), Positives = 103/209 (49%), Gaps = 15/209 (7%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++ ++ A + + AG + +PT+TVYG+ D+ N A+ +L K+R P+ V S Sbjct: 15 TDGIKAAVDAIRAGQCVVMPTDTVYGIGCDAFNNDAVAKLLATKRRGPDMPVPVLVGSWS 74 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK-TACFRVPCG-FTK 125 V+ + L + FWPG L++V+ + P + + + T R+P Sbjct: 75 TVQGLVREFTDTAQTLVEAFWPGGLSIVVPEAPSL---PWNLGDTRGTVLLRMPNQPLAI 131 Query: 126 KLIETYGHPLAIPSANRSGQ---ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 +L+ G P+ + SAN +G ++ + + ++ +P+ +DGG S +G STI++ Sbjct: 132 ELLREVG-PMGVSSANLTGNEPPVTTSAARQQFGNA----VPVYLDGGRSTVGEPSTIID 186 Query: 183 VQCEKKVRILRPGGLEIETLKRAISVELE 211 + V ILR G + E + ++++ E Sbjct: 187 ISGPSPV-ILRNGAISAERICEVLNLDPE 214 >gi|226360605|ref|YP_002778383.1| hypothetical protein ROP_11910 [Rhodococcus opacus B4] gi|226239090|dbj|BAH49438.1| hypothetical protein [Rhodococcus opacus B4] Length = 218 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 60/205 (29%), Positives = 93/205 (45%), Gaps = 7/205 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S L A L AG + +PT+T+YG+ D+ + A+ L K R P+ V + Sbjct: 14 SAGLSAAKNALKAGRLVVLPTDTLYGIGADAFDSEAVAALLRAKGRGRDMPVPVLVGSWN 73 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + SV P + L + FWPG L+LV++ + T T R+P + Sbjct: 74 TIDGLVYSVRPQARDLIRAFWPGGLSLVVEQAPSLAWDLGDTRG--TVMLRMPLHPVALE 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+ G PLA+ SAN SG+ T V+ + + +DGG ++ G STIV++ Sbjct: 132 LLREVG-PLAVSSANVSGRPPATTVEEA-REQLGGSASVYLDGGRAEQGQASTIVDLTGA 189 Query: 187 KKVRILRPGGLEIETLKRAISVELE 211 RILR G + + + V E Sbjct: 190 AP-RILRVGAVPTGDVADVLGVTAE 213 >gi|271963196|ref|YP_003337392.1| Sua5_yciO_yrdC, YrdC domain-containing protein [Streptosporangium roseum DSM 43021] gi|270506371|gb|ACZ84649.1| Sua5_yciO_yrdC, YrdC domain protein [Streptosporangium roseum DSM 43021] Length = 221 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 56/207 (27%), Positives = 93/207 (44%), Gaps = 13/207 (6%) Query: 9 SNALRKACEFLDA------GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 ++A ++A DA G + +PT+TVYG+ D+ P+A+ L E K R P+ Sbjct: 8 TDAEQRAAGLTDAASAVRRGELVVLPTDTVYGIGADAFTPSAVTSLLEAKGRGRDMPVPV 67 Query: 63 HVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 V + ++ P L FWPGPLTL+ + + + T R+P Sbjct: 68 LVGTVRAANALVENLGPYGQDLVDSFWPGPLTLI--CRANRSLSWDLGDSKGTVAIRMPL 125 Query: 122 -GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 +L++ G P+A+ SANRSG + + + + +DGG STI Sbjct: 126 HSVALELLKETG-PMAVSSANRSGAPAAITAADA-EKQLGDSVAVYLDGGPCADDTPSTI 183 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAIS 207 +++ R+LR G + +E L+ I Sbjct: 184 LDLTTAVP-RLLRRGAVSVEKLRGVIG 209 >gi|116750183|ref|YP_846870.1| Sua5/YciO/YrdC/YwlC family protein [Syntrophobacter fumaroxidans MPOB] gi|116699247|gb|ABK18435.1| translation factor SUA5 [Syntrophobacter fumaroxidans MPOB] Length = 225 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 57/204 (27%), Positives = 94/204 (46%), Gaps = 6/204 (2%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 +++ + A L G + PTET YGL + +P + ++ IKKR L S Sbjct: 26 SETEVVEAATSLLTRGGIVVYPTETFYGLGGNPLSPATVAAIFAIKKREREKALPLIASG 85 Query: 67 ISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 I V++ P L+ LA FWPGPLTL+L + + P A+ RV Sbjct: 86 IQAVREWVEEFPALAERLAAAFWPGPLTLILR--AVHRLPPQVHASTGKIAIRVSSHPVA 143 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + L + G + SAN +GQ + + I + +++ +ID G L STIV+V Sbjct: 144 RALAASLGGLIVSTSANFTGQRACRTLAEI-PIELVRQVDGVIDAGRLPGSLPSTIVDVT 202 Query: 185 CEKKVRILRPGGLEIETLKRAISV 208 + ++R G + ++RA ++ Sbjct: 203 GGSPL-LVREGCVPFMEIERAAAL 225 >gi|317506168|ref|ZP_07963989.1| Sua5/YciO/YrdC/YwlC family protein [Segniliparus rugosus ATCC BAA-974] gi|316255513|gb|EFV14762.1| Sua5/YciO/YrdC/YwlC family protein [Segniliparus rugosus ATCC BAA-974] Length = 213 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 55/188 (29%), Positives = 85/188 (45%), Gaps = 11/188 (5%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK-HASVDPLSLHL 83 + IPT+TVYGL D+ + A+ L K R P V + V+ A+V + L Sbjct: 30 VVIPTDTVYGLGCDAFDQAAVAALLSAKGRGRDMPTPVLVGSWATVEGLTAAVTDQAWQL 89 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRS 143 FWPGPL+LVL + + T T R+P + P+A+ SANRS Sbjct: 90 IHAFWPGPLSLVLPVAPSLAWDLGETRG--TVMVRMPLHPVALQVLGKVGPMAVSSANRS 147 Query: 144 GQI---SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200 GQ + K L S+ + ++ G + +G STI+++ ++LR G L E Sbjct: 148 GQPPARTAAEAKEQLGDSVA----VYLESGSAPLGEPSTILDLSSGAP-KVLREGALSAE 202 Query: 201 TLKRAISV 208 + + V Sbjct: 203 RIAEVLGV 210 >gi|298207806|ref|YP_003715985.1| hypothetical protein CA2559_06115 [Croceibacter atlanticus HTCC2559] gi|83850444|gb|EAP88312.1| hypothetical protein CA2559_06115 [Croceibacter atlanticus HTCC2559] Length = 186 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 49/186 (26%), Positives = 90/186 (48%), Gaps = 9/186 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L K L G I PT+T++G+ D+ N A+++++E+KKR L+C V D M+ Sbjct: 5 LNKCLNVLKKGGLILYPTDTIWGIGCDATNYDAVQKVFELKKRAESKALVCLVHDYKMLN 64 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLD---LLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128 ++ P + + P T++ D L++ + + ++ A + F L+ Sbjct: 65 QYIENIPEVAYDILKYAQKPTTIIYDKAKLVAENVVGEDESLAVRVAKDK----FCNDLV 120 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK-IGLESTIVNVQCEK 187 + + PL SAN SG+ S N K I S I K + +++ +K + S I+ + + Sbjct: 121 KKFKRPLVSTSANISGKPSPKNFKEI-SDEILKGVDYVVNLHQNKNMAKPSAIIKLGSDG 179 Query: 188 KVRILR 193 V++LR Sbjct: 180 MVKVLR 185 >gi|330470259|ref|YP_004408002.1| sua5/ycio/yrdc/ywlc family protein [Verrucosispora maris AB-18-032] gi|328813230|gb|AEB47402.1| sua5/ycio/yrdc/ywlc family protein [Verrucosispora maris AB-18-032] Length = 194 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 61/178 (34%), Positives = 83/178 (46%), Gaps = 9/178 (5%) Query: 27 IPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD---PLSLHL 83 +PT+TVYGLAV +PTAI RL+ +K RP L V + + VD S L Sbjct: 13 LPTDTVYGLAVRPDSPTAIDRLFAMKGRPREKNLPVMVGSGEQLSELG-VDINEACSRCL 71 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRS 143 A + PGPLTL + + P A R+P I PL + SAN S Sbjct: 72 ASPYMPGPLTLAVGFVEDGR-RPAWLAGRDEVAVRIPAHPAMLAILAQTGPLLVTSANIS 130 Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIET 201 G + NV ILSS + + + G +SK+ ST+VN C K ++ G+ ET Sbjct: 131 GGPTHENVPSILSSLLFEPDVTVDRGPLSKV--PSTLVN--CRKDPPVVERVGVVSET 184 >gi|86132791|ref|ZP_01051383.1| Sua5/YciO/YrdC/YwlC family protein [Dokdonia donghaensis MED134] gi|85816745|gb|EAQ37931.1| Sua5/YciO/YrdC/YwlC family protein [Dokdonia donghaensis MED134] Length = 186 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 87/183 (47%), Gaps = 9/183 (4%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A L G I PT+TV+G+ D+ NP A+ ++Y +KKR LIC VSD M+ ++ Sbjct: 8 ALAVLKRGGLILYPTDTVWGIGCDATNPDAVDKVYALKKRAESKSLICLVSDFKMLNQYV 67 Query: 75 SVDPLSLHLAKLFWPGPLTLVLD---LLSTTDIHPLSTANLKTACFRVPCGFTKKLIETY 131 P + + P T++ D ++T I P ++ + C C F L++ + Sbjct: 68 ENIPEVAYDILKYAAKPTTIIYDDPIRVATNVIAPDNSTAFR-VCRNQFCNF---LLKKF 123 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS-KIGLESTIVNVQCEKKVR 190 P+ SAN +GQ + + I S I + +++ S K S I+ + + KV Sbjct: 124 KKPIVSTSANITGQPTPQSFSEI-SQEIIDGVDYVVNIDRSRKSSKPSAIIKLTEDGKVT 182 Query: 191 ILR 193 I+R Sbjct: 183 IIR 185 >gi|224535867|ref|ZP_03676406.1| hypothetical protein BACCELL_00731 [Bacteroides cellulosilyticus DSM 14838] gi|224522590|gb|EEF91695.1| hypothetical protein BACCELL_00731 [Bacteroides cellulosilyticus DSM 14838] Length = 187 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 79/164 (48%), Gaps = 20/164 (12%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 ++KAC+ ++ G I PT+T++G+ D+ N A+RR+YEIK+R ++ +V Sbjct: 5 IKKACQVMNEGGVILYPTDTIWGIGCDATNEEAVRRVYEIKQRSDSKAMLV------LVD 58 Query: 72 KHASVDPLSLHLAKLFW------PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124 VD + ++ W PLT++ ++ P A + RV GF+ Sbjct: 59 SPVKVDFYVQDVPEVAWDLIEVADKPLTIIYS--GARNLAPNLIAEDGSVGIRVTNEGFS 116 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 K+L + + + SAN SGQ S N S I +E+ ++D Sbjct: 117 KRLCQQFRKAIVSTSANISGQPSPANY-----SEITEELKSMVD 155 >gi|47222938|emb|CAF99094.1| unnamed protein product [Tetraodon nigroviridis] Length = 655 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 55/181 (30%), Positives = 89/181 (49%), Gaps = 9/181 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI- 67 +++L+ L+ G IPT+TVY LA +NP AI ++Y IK RPA P+ +S++ Sbjct: 464 TSSLQTIAACLEEGGVCGIPTDTVYALAASCKNPQAIEKIYNIKDRPAEKPVCICISNVE 523 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPLS--TANLKTACFRVP-C 121 +V PL + +PG ++ ++ D L + P + RVP Sbjct: 524 QLVAAKPPFSPLLWEFMRNVYPGGISCIISKGDWLLRLGVGPAYDRVGTSDSIMIRVPDH 583 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 T L + G PLAI SAN SG+ T+ ++S K ++ DG +++ + ST+V Sbjct: 584 TVTSHLCDITG-PLAITSANPSGEADSTHHDMVISRLGHKIQGVLCDGHSNEV-VASTVV 641 Query: 182 N 182 N Sbjct: 642 N 642 >gi|126172293|ref|YP_001048442.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica OS155] gi|152998587|ref|YP_001364268.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica OS185] gi|217971252|ref|YP_002356003.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica OS223] gi|212288219|sp|A3CYL0|RIMN_SHEB5 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|212288220|sp|A6WHB6|RIMN_SHEB8 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|125995498|gb|ABN59573.1| translation factor SUA5 [Shewanella baltica OS155] gi|151363205|gb|ABS06205.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica OS185] gi|217496387|gb|ACK44580.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica OS223] Length = 188 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 53/175 (30%), Positives = 75/175 (42%), Gaps = 10/175 (5%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS---L 81 IA PTE VYGL D N TAI++L +K+RP LI SD + + L+ L Sbjct: 19 IAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWQKGLILVASDFQQLLAYVDESQLTAEQL 78 Query: 82 HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSA 140 A WPGP T V+ + + + RV + L PL SA Sbjct: 79 EFAFSKWPGPFTFVMPI--KAHVSKYLCGEFDSIAVRVSAHAGVQALCRALNKPLVSTSA 136 Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 N +G+ IL+ K I ++ G + + STI++ + K ILR G Sbjct: 137 NLAGEDPALTAAEILADFTGK-IDALVLGELGEQRQPSTIIDARSGK---ILRNG 187 >gi|124025123|ref|YP_001014239.1| putative translation factor (SUA5) [Prochlorococcus marinus str. NATL1A] gi|123960191|gb|ABM74974.1| Putative translation factor (SUA5) [Prochlorococcus marinus str. NATL1A] Length = 199 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 59/173 (34%), Positives = 82/173 (47%), Gaps = 13/173 (7%) Query: 27 IPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH--VSDISMVKKHASVDPLSLHLA 84 PT+T+ L P ++++ IKKRP+ PLI SD H SL LA Sbjct: 31 FPTDTLPALC---SYPKYSKKIWTIKKRPSSKPLILMGGCSDDLFEFVHPCALEESLQLA 87 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSG 144 K++WPG LT+VL + + N FRVP + + PLA SAN SG Sbjct: 88 KIYWPGALTMVLPTIG--NFSKYLNGNSNAVGFRVPALRIARDLLMQTGPLATTSANISG 145 Query: 145 QISITNVKHILSSSI-CKEIPLIID-GGISKIGLESTIVNVQCEKKVRILRPG 195 + T VK + +SI EIP++ S G+ ST+V + K +LRPG Sbjct: 146 E---TPVKDAMEASIQFPEIPILAPIPWPSSSGMASTVVEWK-NGKWNLLRPG 194 >gi|254796933|ref|YP_003081770.1| Sua5/YciO/YrdC/YwlC family protein [Neorickettsia risticii str. Illinois] gi|254590181|gb|ACT69543.1| Sua5/YciO/YrdC/YwlC family protein [Neorickettsia risticii str. Illinois] Length = 195 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 51/180 (28%), Positives = 85/180 (47%), Gaps = 6/180 (3%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L G + PTETVY LA D+ N A+ R+Y+IK+R L V+ IS ++ AS + Sbjct: 9 LRVGGVVIFPTETVYALACDASNYRAMLRIYDIKQRNIKKNLPVMVAGISQLESFASFNE 68 Query: 79 LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAI 137 L K PGP+T +L + + + RVP K++ + P+ Sbjct: 69 SQARLIKECCPGPVTFILKRKKSAHLRFRFPEKVAV---RVPDSKVALKILRGFNRPVFA 125 Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197 S N SG+ ++++ I S + K + II G S+I+++ ++ V ++R G Sbjct: 126 TSVNLSGRPAVSSFTQI-GSYMKKRVSRIICDNRGVKGTASSIIDISGKRAV-LVRKGAF 183 >gi|88608553|ref|YP_506460.1| Sua5/YciO/YrdC/YwlC family protein [Neorickettsia sennetsu str. Miyayama] gi|88600722|gb|ABD46190.1| Sua5/YciO/YrdC/YwlC family protein [Neorickettsia sennetsu str. Miyayama] Length = 195 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 52/180 (28%), Positives = 84/180 (46%), Gaps = 6/180 (3%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L G + PTETVY LA D+ N A+ R+Y+IK+R L V+ IS + AS + Sbjct: 9 LRVGGVVIFPTETVYALACDASNYRAMLRIYDIKQRNFRKSLPIMVAGISDLGSFASFNE 68 Query: 79 LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAI 137 L + PGP+T +L + + + RVP K++ + P+ Sbjct: 69 SQARLIQECCPGPVTFILKRKKSAHLRFRFPEKVAV---RVPDSKVALKILRGFKRPVFA 125 Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197 S N SG+ +++N I S I K + II G S+I+++ ++ V ++R G Sbjct: 126 TSVNLSGRPAVSNFTQI-GSYIKKRVSRIICDNREVKGTASSIIDISGKRAV-LVRKGAF 183 >gi|304412740|ref|ZP_07394343.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica OS183] gi|307305795|ref|ZP_07585541.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica BA175] gi|304348950|gb|EFM13365.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica OS183] gi|306911288|gb|EFN41714.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica BA175] Length = 188 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 53/175 (30%), Positives = 75/175 (42%), Gaps = 10/175 (5%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS---L 81 IA PTE VYGL D N TAI++L +K+RP LI SD + + L+ L Sbjct: 19 IAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWQKGLILVASDFQQLLAYVDESQLTAEQL 78 Query: 82 HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSA 140 A WPGP T V+ + + + RV + L PL SA Sbjct: 79 EFAFSKWPGPFTFVMPI--KAHVSKYLCGEFDSIAVRVSAHAGVQTLCRALNKPLVSTSA 136 Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 N +G+ IL+ K I ++ G + + STI++ + K ILR G Sbjct: 137 NLAGEDPALTAAEILADFTGK-IDALVLGELGEQRQPSTIIDARSGK---ILRNG 187 >gi|145300980|ref|YP_001143821.1| Sua5/YciO/YrdC family protein [Aeromonas salmonicida subsp. salmonicida A449] gi|212277666|sp|A4ST51|RIMN_AERS4 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|142853752|gb|ABO92073.1| Sua5/YciO/YrdC family protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 186 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 9/152 (5%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS---L 81 IA TE V+GL D + A++RL IK+RP LI +D+ ++ + + LS L Sbjct: 18 IAYATEAVFGLGCDPDSELAVQRLLAIKQRPVEKGLILIAADLVQLQDYIDLSQLSGEQL 77 Query: 82 HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140 + WPGP T ++ +TT T T RV + L +G PL SA Sbjct: 78 ARVEASWPGPFTWIMPARATTPT--WLTGQFDTLAVRVTAHPQVQALCRAFGKPLVSTSA 135 Query: 141 NRSGQI---SITNVKHILSSSICKEIPLIIDG 169 N +G+ +T++ +L+S + +P + G Sbjct: 136 NLTGEEPARRVTDIGELLASKLAYILPGEVGG 167 >gi|78049489|ref|YP_365664.1| Sua5/YciO/YrdC family protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325925733|ref|ZP_08187108.1| translation factor SUA5 [Xanthomonas perforans 91-118] gi|123584024|sp|Q3BNJ9|RIMN_XANC5 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|78037919|emb|CAJ25664.1| Sua5/YciO/YrdC family protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325543861|gb|EGD15269.1| translation factor SUA5 [Xanthomonas perforans 91-118] Length = 187 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 51/189 (26%), Positives = 81/189 (42%), Gaps = 7/189 (3%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 +TD+ L +A L G IA PTE V+GL D R A+ RL EIK+RP +I S Sbjct: 1 MTDTLDLDRAVATLTQGGVIAYPTEAVWGLGCDPRQEAAVLRLLEIKRRPVEKGVIVVAS 60 Query: 66 DISMVKKHASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 + +++ +D P WPGP T +L + T T R+ Sbjct: 61 SVDLLRDWVDIDALEPARRQDVLASWPGPHTWILPV--TARAPRWVTGEHDGLAVRISAH 118 Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 L +G PL SAN +G+ + + L ++ I ++DG + + I Sbjct: 119 PVVAALCAAWGAPLVSTSANLAGEPPARS-RAALDPALLATIDGVVDGETGALAQPTQIR 177 Query: 182 NVQCEKKVR 190 + + + +R Sbjct: 178 DARSGQILR 186 >gi|294664410|ref|ZP_06729767.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605816|gb|EFF49110.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 187 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 52/190 (27%), Positives = 83/190 (43%), Gaps = 9/190 (4%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 +TD+ L +A L G IA PTE V+GL D R A+ RL EIK+RP +I S Sbjct: 1 MTDTLDLGRAVAALTQGGVIAYPTEAVWGLGCDPRQQAAVMRLLEIKRRPVEKGVIVVAS 60 Query: 66 DISMVKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPC 121 + +++ + +P WPGP T +L + TD P T R+ Sbjct: 61 SVDVLRDWVDIEALEPARRQDVLTSWPGPHTWILPI---TDRAPRWVTGEHDGLAVRISA 117 Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L +G PL SAN +G+ + + L ++ I ++DG + + I Sbjct: 118 HPVVAALCGAWGAPLVSTSANLAGEPPARS-RAALDPALLATIDGVVDGETGALAQPTQI 176 Query: 181 VNVQCEKKVR 190 + + + +R Sbjct: 177 RDARSGQILR 186 >gi|153807334|ref|ZP_01960002.1| hypothetical protein BACCAC_01612 [Bacteroides caccae ATCC 43185] gi|149129696|gb|EDM20908.1| hypothetical protein BACCAC_01612 [Bacteroides caccae ATCC 43185] Length = 187 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 69/150 (46%), Gaps = 15/150 (10%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 ++KAC+ ++ G I PT+TV+G+ D+ N A+RR+YEIKKR ++ +V Sbjct: 5 IKKACQVMNEGGVILYPTDTVWGIGCDATNEEAVRRVYEIKKRADSKAMLV------LVD 58 Query: 72 KHASVDPLSLHLAKLFW------PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124 VD + + W PLT++ ++ P A + RV F+ Sbjct: 59 SSVKVDFYVQDVPDVAWDLIEVADKPLTIIYS--GARNLAPNLLAEDGSVGIRVTNEAFS 116 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHI 154 K+L + + + SAN SGQ N I Sbjct: 117 KRLCQQFRKAIVSTSANVSGQPGAANFSEI 146 >gi|325284999|ref|YP_004260789.1| Sua5/YciO/YrdC/YwlC family protein [Cellulophaga lytica DSM 7489] gi|324320453|gb|ADY27918.1| Sua5/YciO/YrdC/YwlC family protein [Cellulophaga lytica DSM 7489] Length = 196 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 90/187 (48%), Gaps = 7/187 (3%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + + K L+ G I PT+TV+G+ D+ N A+ ++Y++KKR +IC V++ M Sbjct: 13 DEINKCITVLENGGVILYPTDTVWGIGCDATNEDAVNKIYQLKKRANTKTMICLVANDFM 72 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 ++KH P P T+V D + +I A K+ RV F + LI Sbjct: 73 LEKHVEKVPEVAFDIIDIADKPTTIVYD--NPKNIAKNLIAEDKSLAIRVATDKFCQYLI 130 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID--GGISKIGLESTIVNVQCE 186 + P+ SAN SG + + K I SS I K + ++ I K+ S+I+ + + Sbjct: 131 SKFKKPIVSTSANLSGDPTAKSFKEI-SSDILKGVDYAVNLQRNIQKV-TPSSIIKLSND 188 Query: 187 KKVRILR 193 V+++R Sbjct: 189 GTVKVIR 195 >gi|197334056|ref|YP_002157319.1| putative yrdC domain protein [Vibrio fischeri MJ11] gi|197315546|gb|ACH64993.1| putative yrdC domain protein [Vibrio fischeri MJ11] Length = 185 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 6/137 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L + + L G IA PTE V+G+ D N A+ L ++KKRP LI + I + Sbjct: 4 LNQVVDALKQGNVIAYPTEGVFGVGCDPDNEQALLNLLDVKKRPKEKGLILIAASIEQLL 63 Query: 72 KHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + ++ L+ ++ K WPGP+T ++ + ++T PL T + RV K + Sbjct: 64 PYIDLEQLTEEQVNTIKASWPGPVTWIVPVKTST--LPLVTGQFDSIAVRVTAHPQVKAI 121 Query: 128 IETYGHPLAIPSANRSG 144 +G P+ SAN SG Sbjct: 122 CNAFGKPITSTSANLSG 138 >gi|85711001|ref|ZP_01042062.1| Possible translation factor, Sua5/YciO/YrdC/YwlC family protein [Idiomarina baltica OS145] gi|85695405|gb|EAQ33342.1| Possible translation factor, Sua5/YciO/YrdC/YwlC family protein [Idiomarina baltica OS145] Length = 184 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 49/150 (32%), Positives = 69/150 (46%), Gaps = 11/150 (7%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 IA PTE V+GL D RN AIR++ +K+RP LI +D S + + V ++ Sbjct: 18 IAYPTEAVFGLGCDPRNEEAIRKILTLKERPEDKGLILIAADYSQLTPY--VKDSAIGQD 75 Query: 85 KLF-----WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIP 138 K F WPGP+TL+L T + PL T T RV ++L G L Sbjct: 76 KRFSVLSHWPGPVTLILPARDT--VSPLLTGGRDTIAVRVTAYEPVRELCRKLGTALVST 133 Query: 139 SANRSGQISITNVKHILSSSICKEIPLIID 168 SAN SG+ + + S E+ + D Sbjct: 134 SANPSGEEPARTAQEV-SGYFGDEVDWVWD 162 >gi|59713143|ref|YP_205919.1| ribosome maturation factor [Vibrio fischeri ES114] gi|75353187|sp|Q5E1R5|RIMN_VIBF1 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|59481244|gb|AAW87031.1| predicted ribosome maturation factor [Vibrio fischeri ES114] Length = 185 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 6/137 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L + + L G IA PTE V+G+ D N A+ L ++KKRP LI + I + Sbjct: 4 LNQVVDALKQGNVIAYPTEGVFGVGCDPDNEQALLNLLDVKKRPKEKGLILIAASIEQLL 63 Query: 72 KHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + ++ L+ ++ K WPGP+T ++ + ++T PL T + RV K + Sbjct: 64 PYIDLEQLTEEQVNTIKASWPGPVTWIVPVKTST--LPLVTGQFDSIAVRVTAHPQVKAI 121 Query: 128 IETYGHPLAIPSANRSG 144 +G P+ SAN SG Sbjct: 122 CNAFGKPITSTSANLSG 138 >gi|256820498|ref|YP_003141777.1| SUA5/yciO/yrdC domain-containing protein [Capnocytophaga ochracea DSM 7271] gi|256582081|gb|ACU93216.1| SUA5/yciO/yrdC domain protein [Capnocytophaga ochracea DSM 7271] Length = 185 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 47/138 (34%), Positives = 67/138 (48%), Gaps = 19/138 (13%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 E L AG I PT+TV+GL D+ NP A+ ++++IK+R LI VSD M++ + + Sbjct: 9 EILKAGKVILYPTDTVWGLGCDATNPEAVAKIFQIKQRSESKSLIILVSDTEMLQHYVTD 68 Query: 77 DPLSLHLAKLFWPGPLTLVLDLLSTTDI---HPLSTAN-----LKTACFRVPCG-FTKKL 127 P P LT + L T I HPL A T RV F +++ Sbjct: 69 IP----------PKVLTYLQTLQEPTTIIYSHPLHLAKNVIAADNTVAIRVVQDVFCQQM 118 Query: 128 IETYGHPLAIPSANRSGQ 145 I +G P+ SAN SG+ Sbjct: 119 IADFGKPIVSTSANISGE 136 >gi|325280506|ref|YP_004253048.1| Sua5/YciO/YrdC/YwlC family protein [Odoribacter splanchnicus DSM 20712] gi|324312315|gb|ADY32868.1| Sua5/YciO/YrdC/YwlC family protein [Odoribacter splanchnicus DSM 20712] Length = 202 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 53/191 (27%), Positives = 89/191 (46%), Gaps = 19/191 (9%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRR---LYEIKKRPAMNPLICHVSDISMV 70 K E L AG I PT+T+Y + D N A++R L IK A +IC D+S + Sbjct: 17 KVVEVLKAGGIIIYPTDTIYAIGCDINNVKAVQRVCQLKNIKPEKANFSMICR--DLSNI 74 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIE 129 +A V+ + K PGP T VL +T + + KT R+P + ++E Sbjct: 75 AAYAKVNNEVFKVMKRNLPGPFTFVLP--ATNKLPNVMINRRKTIGIRIPDNYIVMSIVE 132 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKE-----IPLIIDGGISKIGLESTIVNVQ 184 G+PL S ++ V+++ + E + L+IDGG + + ST+V+ Sbjct: 133 ELGNPLLTTSVKAEDEV----VEYMTDPELIHEKYEKLVDLVIDGGFGQ-NVASTVVDCT 187 Query: 185 CEKKVRILRPG 195 + ++ ++R G Sbjct: 188 -DDRIEVIRQG 197 >gi|308177038|ref|YP_003916444.1| Sua5 family translation factor [Arthrobacter arilaitensis Re117] gi|307744501|emb|CBT75473.1| putative Sua5 family translation factor [Arthrobacter arilaitensis Re117] Length = 227 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 58/204 (28%), Positives = 92/204 (45%), Gaps = 17/204 (8%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRP-AMNPLICHVSDISMVKKHASVDPLSLHL 83 I +PT+TVYG+ D+ + + L K R M P + +M + + L Sbjct: 30 IVLPTDTVYGIGADAFSAQGVAMLLAAKGRNRTMPPPVLIAQSATMDGLARDIPDEARKL 89 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANL----KTACFRVPCGFTKKLIETYGHPLAIPS 139 A+ FWPG LTL+L P T +L T RVP T + PLA+ S Sbjct: 90 AEAFWPGGLTLIL------HAQPSLTWDLGETRGTVALRVPNDETALELLGQTGPLAVSS 143 Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGG-ISKIG---LESTIVNVQCEKKVRILRPG 195 ANR+G + N++ L + + + +DGG + G L STI++ + + ++R G Sbjct: 144 ANRTGNPAALNIEQAL-EQLGDSVDVYLDGGPRGEEGDDVLPSTIIDC-TGQHLSVVRSG 201 Query: 196 GLEIETLKRAISVELEYCVDETST 219 + IE L+ + L+ D T Sbjct: 202 AISIEELRVVVPGILDLGQDAPET 225 >gi|262201850|ref|YP_003273058.1| sua5/YciO/YrdC/YwlC family protein [Gordonia bronchialis DSM 43247] gi|262085197|gb|ACY21165.1| Sua5/YciO/YrdC/YwlC family protein [Gordonia bronchialis DSM 43247] Length = 219 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 57/209 (27%), Positives = 91/209 (43%), Gaps = 19/209 (9%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S +R A + AG + +PT+T+YGL D+ + A+ L K R P+ V Sbjct: 14 SAGIRAAVGAIKAGRLVVMPTDTLYGLGCDAFDSDAVSALLAAKNRGRDMPVPVLVGSWH 73 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDL-------LSTTDIHPLSTANLKTACFRVP 120 + +V + L + FWPG L+LV++ L TD T R+P Sbjct: 74 TIDGLVLTVSQAARDLVEAFWPGGLSLVVEQAPSLAWDLGDTD---------GTVMLRMP 124 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 + P+A+ SAN SGQ T + + +++ + +DGG + STI Sbjct: 125 LHPVAIEVLREVGPMAVSSANVSGQRPATTADDA-RAQLGEDVAVYLDGGPAPAAQASTI 183 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVE 209 V+V RILR G + E + + V+ Sbjct: 184 VDVTGPVP-RILRVGAVTTEQVAEVLDVD 211 >gi|56459134|ref|YP_154415.1| Sua5 family translation factor [Idiomarina loihiensis L2TR] gi|81362897|sp|Q5QXJ5|RIMN_IDILO RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|56178144|gb|AAV80866.1| Possible translation factor, Sua5/YciO/YrdC/YwlC family [Idiomarina loihiensis L2TR] Length = 186 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 45/127 (35%), Positives = 63/127 (49%), Gaps = 10/127 (7%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 IA PTE V+GL D RN A+++L +K+RPA LI +D S + + V+ ++ Sbjct: 17 IAYPTEAVFGLGCDPRNEVAVQKLLSLKQRPAEKGLILIAADYSQLLPY--VEDSAIAQD 74 Query: 85 KLF-----WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIP 138 K F WPGP+TL+L + + L T T RV + L GH L Sbjct: 75 KRFSVLSHWPGPVTLILPV--RKGVSTLLTGGRDTIAVRVTAHEPARALCRELGHALVST 132 Query: 139 SANRSGQ 145 SAN +GQ Sbjct: 133 SANLTGQ 139 >gi|325280221|ref|YP_004252763.1| Sua5/YciO/YrdC/YwlC family protein [Odoribacter splanchnicus DSM 20712] gi|324312030|gb|ADY32583.1| Sua5/YciO/YrdC/YwlC family protein [Odoribacter splanchnicus DSM 20712] Length = 190 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 18/142 (12%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +RK L G I PT+T++GL D+ NP A++R+Y+IKKR ++ + D + Sbjct: 9 IRKTLGILKNGGVILYPTDTIWGLGCDATNPEAVKRIYDIKKRADNKSMLVLLDDAGKIA 68 Query: 72 KHASVDPLSLHLAK-------LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123 +A V ++L L + + +PG L +L+ A T R+ F Sbjct: 69 SYADVPDIALDLIEVADKPTTIIYPGAKRLAPNLI----------AEDGTIGIRITREEF 118 Query: 124 TKKLIETYGHPLAIPSANRSGQ 145 T+ LI Y P+ SAN SG+ Sbjct: 119 TRSLIFRYNKPIVSTSANISGE 140 >gi|88801030|ref|ZP_01116579.1| hypothetical protein MED297_05069 [Reinekea sp. MED297] gi|88776233|gb|EAR07459.1| hypothetical protein MED297_05069 [Reinekea sp. MED297] Length = 185 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 90/189 (47%), Gaps = 9/189 (4%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 +T + L+ A E L G IA PTE VYGL D N A+ R+ IK+RP +I V+ Sbjct: 1 MTFNQPLQIAAETLLEGGVIAYPTEGVYGLGCDPFNADAVSRILTIKRRPVHKGVIL-VA 59 Query: 66 DISMVKKHASVDPLS-LHLAKL--FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 D + + ++PL+ A+L WPGP T V+ + T T RV Sbjct: 60 D-RLERFEPFLNPLNDAQRAQLKAHWPGPYTWVIP--HNGRLPEWVTGGRPTVAVRVSAH 116 Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 + L E G P+ SANRSG+ S+ + +++ ++I ++ G + G S I Sbjct: 117 PLARALSERSGLPIVSTSANRSGRPSLVTSLQV-RTALGQDIDCLLHGRVQTPGQASQIT 175 Query: 182 NVQCEKKVR 190 ++ ++ R Sbjct: 176 DLISGQRFR 184 >gi|323345671|ref|ZP_08085894.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella oralis ATCC 33269] gi|323093785|gb|EFZ36363.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella oralis ATCC 33269] Length = 189 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 45/151 (29%), Positives = 77/151 (50%), Gaps = 5/151 (3%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV- 64 +T + ++ A E + G I PT+TV+G+ D+ N A+ ++Y IK+R LIC V Sbjct: 1 MTQAEDIKNAVEIMKKGGVILYPTDTVWGIGCDATNAEAVAKVYRIKQRDDSKALICLVD 60 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 SD+ M + +V ++ + +L P T++LD ++ P A + R+ F Sbjct: 61 SDVRMQRYVRNVPNVAWDIMELA-TKPTTVILD--DAVNLAPNLIAEDGSIAMRITKEPF 117 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHI 154 + +L + PL SAN SGQ + +N + I Sbjct: 118 SHELCYRFQKPLVSTSANISGQPAASNYRDI 148 >gi|293399949|ref|ZP_06644095.1| Sua5/YciO/YrdC/YwlC family protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306349|gb|EFE47592.1| Sua5/YciO/YrdC/YwlC family protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 203 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 87/183 (47%), Gaps = 10/183 (5%) Query: 16 CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75 + L G +A PT+TVYGLAV N A+ L + K RP P+ VS+ +++ A Sbjct: 15 ADLLKEGKVVAFPTDTVYGLAVIYENEAALEALKKSKGRPENKPIPTMVSNFRQMEEIAY 74 Query: 76 VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHP 134 + + LA+ F PG T++L + T T R+P LI+ P Sbjct: 75 MSEDARKLAEEFMPGGFTMILK--KKEHLPAYLTNGFDTVGIRMPDDDIILHLIDLCEKP 132 Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDG--GISKIGLESTIVNVQCEKKVRIL 192 L + SAN SG+ + +L + I I+ G G SK STIV++ + ++RI+ Sbjct: 133 LLVTSANLSGEEPQETAEGVL-KQLDGRIDAIVVGESGGSKA---STIVDMSTD-ELRIV 187 Query: 193 RPG 195 R G Sbjct: 188 REG 190 >gi|15668233|ref|NP_247026.1| hypothetical protein MJ_0062 [Methanocaldococcus jannaschii DSM 2661] gi|2500922|sp|Q60369|Y062_METJA RecName: Full=Uncharacterized protein MJ0062 gi|1498824|gb|AAB98044.1| hypothetical protein MJ_0062 [Methanocaldococcus jannaschii DSM 2661] Length = 207 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 55/179 (30%), Positives = 87/179 (48%), Gaps = 27/179 (15%) Query: 13 RKACEFLDA----GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +K EFL G + T+T+YG++ ++ N A+R++Y IK+R PL V D + Sbjct: 19 KKVLEFLKKEILNGKIVICGTDTLYGISANALNEKAVRKVYNIKRREFNKPLSICVRDKN 78 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVL-------DLLSTTDIHPLSTANLKTACFRVPC 121 ++K+A V+ L+ + F PGPLT++L D+++ I R+P Sbjct: 79 EIEKYAYVNDLAKKIIDKFLPGPLTIILKKKPGIPDIVAKDYIG-----------IRIP- 126 Query: 122 GFTKKLI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + +I E PL SAN SG+ S T V I + K++ +ID G K ST Sbjct: 127 --DEPIIRELSIVPLTTTSANISGKESPTTVDEI-DKEVLKKVDYVIDIGKCKYSKPST 182 >gi|145295341|ref|YP_001138162.1| hypothetical protein cgR_1281 [Corynebacterium glutamicum R] gi|140845261|dbj|BAF54260.1| hypothetical protein [Corynebacterium glutamicum R] Length = 216 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 58/209 (27%), Positives = 97/209 (46%), Gaps = 11/209 (5%) Query: 8 DSNA--LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 DS A L+ A + + AG + +PT+T+YGL D+ N A+ L K R P+ V Sbjct: 11 DSRAAGLKAAVDAVKAGQLVVLPTDTLYGLGCDAFNNEAVANLLATKHRGPDMPVPVLVG 70 Query: 66 DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK-TACFRVPCG- 122 ++ S + L + FWPG L++++ + P + + + T R+P Sbjct: 71 SWDTIQGLVHSYSAQAKALVEAFWPGGLSIIVPQAPSL---PWNLGDTRGTVMLRMPLHP 127 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 +L+ G P+A+ SAN SG + V + + + + +DGG IG STIV+ Sbjct: 128 VAIELLRQTG-PMAVSSANISGHTPPSTVLEA-RQQLNQNVSVYLDGGECAIGKPSTIVD 185 Query: 183 VQCEKKVRILRPGGLEIETLKRAISVELE 211 + +ILR G + E + + V E Sbjct: 186 ISGPAP-KILREGAISAERVGEVLGVSAE 213 >gi|307327908|ref|ZP_07607090.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces violaceusniger Tu 4113] gi|306886426|gb|EFN17430.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces violaceusniger Tu 4113] Length = 215 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 59/206 (28%), Positives = 94/206 (45%), Gaps = 21/206 (10%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 LR+A + G + +PT+TVYG+ D+ N A+ L E K R P V + Sbjct: 15 TGLREAASAVRRGELVVLPTDTVYGIGADAFNAEAVGDLLEAKGRGRNMPTPVLVGSPNT 74 Query: 70 VKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANL----KTACFRVPCG-F 123 + + ++ L FWPG LTLV P T +L T R+P Sbjct: 75 LHGLVTDFSEMAWELVDAFWPGALTLV------ARHQPSLTWDLGETRGTVAVRMPLHPV 128 Query: 124 TKKLIETYGHPLAIPSANRSGQISITN---VKHILSSSICKEIPLIIDGGISKIGLESTI 180 +L+ +G P+A+ SAN +G S + + +L S+ + +DGG + + S+I Sbjct: 129 AIELLTDFG-PMAVSSANLTGHPSPQDCDAAQDMLGDSVS----VYLDGGPTPAAVPSSI 183 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAI 206 V+V + V +LR G L E L+ + Sbjct: 184 VDVTGKVPV-LLRAGALTAEQLREVV 208 >gi|269957241|ref|YP_003327030.1| Sua5/YciO/YrdC/YwlC family protein [Xylanimonas cellulosilytica DSM 15894] gi|269305922|gb|ACZ31472.1| Sua5/YciO/YrdC/YwlC family protein [Xylanimonas cellulosilytica DSM 15894] Length = 236 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 60/230 (26%), Positives = 103/230 (44%), Gaps = 14/230 (6%) Query: 3 IMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58 + +TD N A+ +A + G + +PT+TVYG+A ++ + A+ + K R Sbjct: 8 VHDVTDPNTWGAAIDEAVNAVRRGALVVLPTDTVYGVAAEAFDAGAVAAIGTAKGRADRT 67 Query: 59 PLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 P V D+ + A+ V + LA FWPG LTLV L + + N Sbjct: 68 PPPVLVPDVRTLDGLATEVSDDARALADAFWPGALTLV--LRAQPSLQWDLGDNRGVVAL 125 Query: 118 RVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 R+P + PLA+ A R G+ + + + + + + +DGG G Sbjct: 126 RMPDHPAALALLRRTGPLAVTGAQRVGETAPLDADAA-RAQLGDAVAVYLDGGPVP-GGG 183 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAI-SVELEYCVDE---TSTPQSP 223 ST+V+ R++RPG +++E L+ + ++E D+ TS P P Sbjct: 184 STVVDATVTPP-RVVRPGAIDVEALREVVPAIEPLAAEDDAPATSPPADP 232 >gi|260771095|ref|ZP_05880023.1| YrdC family protein [Vibrio furnissii CIP 102972] gi|260613984|gb|EEX39175.1| YrdC family protein [Vibrio furnissii CIP 102972] Length = 185 Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 63/139 (45%), Gaps = 6/139 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 N + L +G IA PTE V+G+ D NP AI +L ++K+RP LI + Sbjct: 2 NNFEHTLQALQSGEVIAYPTEGVFGVGCDPDNPQAIEKLLQLKQRPVEKGLILIAASYQQ 61 Query: 70 VKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + + L+ L + WPGP+T ++ ++ + + T RV + Sbjct: 62 LLPYVDESQLTQEQLERVQSTWPGPVTWIMP--ASERVSHWVSGQFDTIAVRVTDHPLVQ 119 Query: 126 KLIETYGHPLAIPSANRSG 144 KL YG PL SAN SG Sbjct: 120 KLCLAYGKPLTSTSANLSG 138 >gi|170724414|ref|YP_001758440.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella woodyi ATCC 51908] gi|212288229|sp|B1KCX0|RIMN_SHEWM RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|169809761|gb|ACA84345.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella woodyi ATCC 51908] Length = 185 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 54/178 (30%), Positives = 83/178 (46%), Gaps = 7/178 (3%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 + +++G +A PTE VYGL D N AI +L IKKRP LI SD + + Sbjct: 11 QVIESGGVVAYPTEAVYGLGCDPDNDAAITKLLAIKKRPWEKGLILVASDYQQLLPYIDD 70 Query: 77 DPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI-ETYG 132 L+ ++F WPGP T ++ + I L + + RV T + I + G Sbjct: 71 SQLTEEQRERVFSKWPGPFTFIMPI--KPGISNLLCGSFNSLAVRVSDHPTIQAICQQLG 128 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 PL SAN SG+ + + IL + EI ++ G + + STI++ K +R Sbjct: 129 KPLVSTSANHSGEEPAMSHEEIL-AKFEGEIDALVAGSLGEQRKPSTIIDAISGKILR 185 >gi|229819785|ref|YP_002881311.1| Sua5/YciO/YrdC/YwlC family protein [Beutenbergia cavernae DSM 12333] gi|229565698|gb|ACQ79549.1| Sua5/YciO/YrdC/YwlC family protein [Beutenbergia cavernae DSM 12333] Length = 338 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 60/211 (28%), Positives = 94/211 (44%), Gaps = 17/211 (8%) Query: 1 MQIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56 M ++ TD + +L A E + G I +PT+TVYG+A D+ + A+ L K R Sbjct: 1 MTLLDCTDPDNREKSLDAAVEAVTHGGLIVLPTDTVYGIAADAFDKDAVAALLAAKGRGR 60 Query: 57 MNPLICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANL--- 112 P V D S + A+ P + L + FWPG LT+++ P T +L Sbjct: 61 QKPPPVLVGDHSTLDGLATDVPEVVRTLIERFWPGALTIIV------RAQPSLTWDLGYT 114 Query: 113 -KTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171 T R+P + PLA SANR+G+ + + + +DGG Sbjct: 115 RGTVALRMPDDEIALDVLRRTGPLATSSANRTGR-PAATTAAEAQEQLGARVGVYLDGGP 173 Query: 172 SKIGLESTIVNVQCEKKVRILRPGGLEIETL 202 ++ G STI++ + I+R G L +E L Sbjct: 174 ARGGEASTIIDATG-PTLSIVREGALSVEVL 203 >gi|331695521|ref|YP_004331760.1| Sua5/YciO/YrdC/YwlC family protein [Pseudonocardia dioxanivorans CB1190] gi|326950210|gb|AEA23907.1| Sua5/YciO/YrdC/YwlC family protein [Pseudonocardia dioxanivorans CB1190] Length = 214 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 51/188 (27%), Positives = 90/188 (47%), Gaps = 7/188 (3%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLSLHL 83 + +PT+TVYG+ D+ + TA+R L K R P+ V S + V + L Sbjct: 29 VVLPTDTVYGIGCDAFSATAVRSLLAAKGRGPDMPVPVLVGSWSTIDGLVIGVPTAAREL 88 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142 + FWPG L+LVL + +T T R+P +L+ G P+A+ SANR Sbjct: 89 IEAFWPGGLSLVLQHAPSLAWDLGTTRG--TVMLRMPLHPVALELLRDVG-PMAVSSANR 145 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202 SG + + + + + + +DGG ++ + ST+V++ + R+LR G + + + Sbjct: 146 SGHAPAVDAADA-VAQLGEHVAVYLDGGPTEENVPSTVVDLTADAP-RVLREGAVSVAAI 203 Query: 203 KRAISVEL 210 + E+ Sbjct: 204 SEVLGREV 211 >gi|297526270|ref|YP_003668294.1| Sua5/YciO/YrdC/YwlC family protein [Staphylothermus hellenicus DSM 12710] gi|297255186|gb|ADI31395.1| Sua5/YciO/YrdC/YwlC family protein [Staphylothermus hellenicus DSM 12710] Length = 216 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 58/198 (29%), Positives = 93/198 (46%), Gaps = 13/198 (6%) Query: 10 NALRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 N +R+A L+ GL + I T+T+YG+ D + ++Y KKR + P+ S Sbjct: 14 NIVREAYRILENCGLVVGI-TDTLYGIFADPFRDECVSKVYVAKKR-SRKPIPLLASSPK 71 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPLSTANLKTACFRVPCG-FT 124 V D + WPGP+T+VL D + + IH L T + FRVP Sbjct: 72 AVFSITDADHFLQRFLETIWPGPITVVLKPMDNMFSEKIH-LGTGKI---GFRVPASPLP 127 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 +KL + G + SAN SG N+ + + + L ID G + IG ST++++ Sbjct: 128 RKLAQLNGGFITGTSANISGLKPARNIDEAI-KQLGNNVDLYIDSGTAPIGEPSTVIDLT 186 Query: 185 CEKKVRILRPGGLEIETL 202 EK + I+R G + ++ Sbjct: 187 SEKPI-IVRDGAVSYRSI 203 >gi|212550954|ref|YP_002309271.1| SUA5 family translation factor [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549192|dbj|BAG83860.1| putative SUA5 family translation factor [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 189 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 48/186 (25%), Positives = 90/186 (48%), Gaps = 7/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + K CE L G + PT+T++GL D+ N A+ R++ IKKRP ++ + + Sbjct: 6 IAKTCEILRNGGIVLYPTDTIWGLGCDASNEEAVERIFFIKKRPNTRTMLILLDSFDELH 65 Query: 72 KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P ++ L +F PLT++ ++ P A+ T R+ F+K+L Sbjct: 66 NYVENLPEITPDLIDIFHKKPLTIIYS--GAKNVAPNLIASDGTLGIRITKDFFSKQLCF 123 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID--GGISKIGLESTIVNVQCEK 187 +PL SAN SGQ + T I S+ I + + +++ I + S+I+ ++ Sbjct: 124 QLKNPLVSTSANISGQATPTTFSEI-SNEIIESVDYVVNYKRNIIQSAKPSSIIQIENGN 182 Query: 188 KVRILR 193 ++++R Sbjct: 183 SIKVIR 188 >gi|167525667|ref|XP_001747168.1| hypothetical protein [Monosiga brevicollis MX1] gi|163774463|gb|EDQ88092.1| predicted protein [Monosiga brevicollis MX1] Length = 300 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 51/180 (28%), Positives = 91/180 (50%), Gaps = 14/180 (7%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 +A+PT+T+YG+A +++ TA+++LY+IK+R P+ V ++ V +A V L Sbjct: 97 VALPTDTIYGIAAVAQSATAVQKLYDIKERDPAKPIAICVPKVADVYTYAHVTVPDDVLH 156 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANRS 143 +L PG +T+V ++PL + RV T+ ++ P+A+ SAN++ Sbjct: 157 QLL-PGAVTVVFK--RKPALNPLLNPDTDLIGIRVTNHSLTQAIVAGLQAPIALTSANKA 213 Query: 144 GQISITNV---KHILSSSICKEIPLIIDGGISKIG--LESTIVNVQCEKKVRILRPGGLE 198 G S +H+ + C ++DGG G L ST+V++ + +LR G E Sbjct: 214 GAASCVQADEFEHLWPALGC-----VVDGGRLGTGSRLGSTVVDLSKPQTFALLRDGDAE 268 >gi|70952331|ref|XP_745341.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56525633|emb|CAH80221.1| hypothetical protein PC000787.03.0 [Plasmodium chabaudi chabaudi] Length = 169 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 74/137 (54%), Gaps = 10/137 (7%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM-VKKHASVDPLSLHL 83 I PTETVYGL +S + +++ ++++K RP +P+I HV DI+ + ++ ++ Sbjct: 30 IGFPTETVYGLGGNSLSEISLKNIFKMKNRPVSDPIISHVYDIAQAFDQLYHINMYEKYI 89 Query: 84 AKL----FWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCG-FTKKLIETYGHPLAI 137 + F PGPL+++ + PL TA+ + R+P +++I+ P+A Sbjct: 90 IYILNSNFSPGPLSVI---AKAKEYLPLILTAHTQFCAVRIPNNKIAREIIKICNIPIAA 146 Query: 138 PSANRSGQISITNVKHI 154 PSAN+ IS TN H+ Sbjct: 147 PSANKFQHISPTNSLHV 163 >gi|319951890|ref|YP_004163157.1| translation factor sua5 [Cellulophaga algicola DSM 14237] gi|319420550|gb|ADV47659.1| translation factor SUA5 [Cellulophaga algicola DSM 14237] Length = 192 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 51/184 (27%), Positives = 87/184 (47%), Gaps = 5/184 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + K E L G I PT+TV+G+ D+ N A+ ++Y +KKR +IC V++ M++ Sbjct: 11 INKCIEILSKGGLILYPTDTVWGIGCDATNEEAVAKIYALKKRENTKTMICLVANDFMLE 70 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 KH S P + P T+V D + + A T RV F + LI Sbjct: 71 KHVSAVPEVAYDIIDLATKPTTIVYD--NPKGVAKNLVAEDNTLAIRVASDKFCQYLISN 128 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID-GGISKIGLESTIVNVQCEKKV 189 + P+ SAN +G+ + + I S +I K + +++ G S+I+ + + V Sbjct: 129 FKKPIVSTSANIAGETTPQTFQEI-SIAILKGVDYVVNLHQDQNSGTPSSIIKLGNDGVV 187 Query: 190 RILR 193 +I+R Sbjct: 188 KIIR 191 >gi|160873162|ref|YP_001552478.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica OS195] gi|212288221|sp|A9KUA7|RIMN_SHEB9 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|160858684|gb|ABX47218.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica OS195] gi|315265387|gb|ADT92240.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica OS678] Length = 188 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 53/175 (30%), Positives = 74/175 (42%), Gaps = 10/175 (5%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS---L 81 IA PTE VYGL D N TAI +L +K+RP LI SD + + L+ L Sbjct: 19 IAYPTEAVYGLGCDPDNDTAILKLLAVKQRPWQKGLILVASDFQQLLAYVDESQLTAEQL 78 Query: 82 HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSA 140 A WPGP T V+ + + + RV + L PL SA Sbjct: 79 EFAFSKWPGPFTFVMPI--KAQVSKYLCGEFDSIAVRVSAHAGVQALCRALNKPLVSTSA 136 Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 N +G+ IL+ K I ++ G + + STI++ + K ILR G Sbjct: 137 NLAGEDPALTAAEILADFTGK-IDALVLGELGEQRQPSTIIDARSGK---ILRNG 187 >gi|260911833|ref|ZP_05918400.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella sp. oral taxon 472 str. F0295] gi|260634044|gb|EEX52167.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella sp. oral taxon 472 str. F0295] Length = 189 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 47/151 (31%), Positives = 76/151 (50%), Gaps = 5/151 (3%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV- 64 +T ++KA E L G I PT+T++G+ D+ N A+ ++Y+IK+R +IC V Sbjct: 1 MTREEDIKKAVEVLRKGGVILYPTDTIWGIGCDATNAEAVAKVYQIKQRDDSKAMICLVD 60 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 S + M + +V ++ L +L P TL+LD ++ P A + RV F Sbjct: 61 SAMRMQRYVRNVPNVAWDLVELA-TKPTTLILD--DAVNLAPNLIAEDGSVALRVTTEPF 117 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHI 154 +K+L + L SAN SG+ + N K I Sbjct: 118 SKELCYRFQKALVSTSANISGEPAAANYKDI 148 >gi|126465445|ref|YP_001040554.1| translation factor SUA5 [Staphylothermus marinus F1] gi|126014268|gb|ABN69646.1| translation factor SUA5 [Staphylothermus marinus F1] Length = 216 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 58/200 (29%), Positives = 99/200 (49%), Gaps = 13/200 (6%) Query: 10 NALRKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 N +++A L + GL + + T+T+YG+ D + R+Y +KKR P+ S Sbjct: 14 NIIQEAYRILKSCGLVVGV-TDTLYGIFADPFRDECVSRIYVVKKRKG-KPIPLLASSPK 71 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPLSTANLKTACFRVPCG-FT 124 V +++ ++ WPGP+T++L D + + +IH L T + FRVP Sbjct: 72 AVFSITNINHNLQRFLEVIWPGPVTVILKPIDSIFSEEIH-LGTEKI---GFRVPASPLP 127 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 +KL E G + SAN SG N++ + + I L ID G + IG ST++++ Sbjct: 128 RKLAELNGGFITGTSANISGLKPAKNIEEAI-KQLGNNIDLYIDSGTAPIGEPSTVIDLT 186 Query: 185 CEKKVRILRPGGLEIETLKR 204 EK + I+R G + ++ R Sbjct: 187 SEKPL-IVRDGVVSYRSIIR 205 >gi|319789197|ref|YP_004150830.1| Sua5/YciO/YrdC/YwlC family protein [Thermovibrio ammonificans HB-1] gi|317113699|gb|ADU96189.1| Sua5/YciO/YrdC/YwlC family protein [Thermovibrio ammonificans HB-1] Length = 206 Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 81/190 (42%), Gaps = 6/190 (3%) Query: 18 FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77 ++AG +PT+T+YGL + N A+ R+Y IK R PLI + + Sbjct: 16 LINAGAVGCLPTDTLYGLVGSALNGNAVSRVYRIKGRDPNKPLIVLFKSPEQLGELGVKV 75 Query: 78 PLSLHLA-KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLA 136 P +L K +P P+TLVL L ++ S RVP + PL Sbjct: 76 PKALEKGIKALYPAPVTLVLPLSESSPFR--SIFKRDDLAVRVPNSPLLLELLELTGPLF 133 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN G N + L + +G + STIV V E ++++LR G Sbjct: 134 APSANPQGLKPAENCRECL-KYFKNAVDFCAEGRAGNVA--STIVKVLPEGELKLLREGA 190 Query: 197 LEIETLKRAI 206 +E E +K + Sbjct: 191 VEFEKVKEVL 200 >gi|308274797|emb|CBX31396.1| Uncharacterized protein yciO [uncultured Desulfobacterium sp.] Length = 201 Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 70/160 (43%), Gaps = 4/160 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + K + L IA PT+T YG+ D N AI ++Y +K+R +P S + + Sbjct: 15 ISKVIDILKKDGVIAYPTDTYYGIGCDIMNKKAIEKIYLLKQREKNSPFSFMCSGLKNIS 74 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIET 130 +A V + K PGP T VL+ + + + N KTA RVP L+E Sbjct: 75 DYAKVSNYAYKTMKRLLPGPYTFVLE--GSKLVPKIMLTNRKTAGIRVPNNIICLALVEE 132 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 G+P+ SA N ++ I L+IDGG Sbjct: 133 LGNPIITTSATMPDGTVFDN-PSLIHEYYKTRINLVIDGG 171 >gi|186476189|ref|YP_001857659.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia phymatum STM815] gi|184192648|gb|ACC70613.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia phymatum STM815] Length = 230 Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 90/186 (48%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A + +++G +A+PT++ Y LA N A+ R+ I+ L V D+S + Sbjct: 36 IKQAAQIIESGGVVALPTDSSYALACQLDNRNAVDRVRRIRGIDERQLLSLLVRDLSELA 95 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKKLIE 129 A VD L K PGP VL +T ++ LS + KT RVP T ++E Sbjct: 96 NFALVDNRQYRLIKSVTPGPYVFVLQ--ATKEVPRRLSHPSRKTIGLRVPDHAITLAILE 153 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL + G+ N + + K++ L+IDGG ST++++ E+ V Sbjct: 154 ELGQPLLGSTLILPGETQPLNDPAEIRERLEKQLDLVIDGGACPCE-PSTVIDLTGEEPV 212 Query: 190 RILRPG 195 ++RPG Sbjct: 213 -LVRPG 217 >gi|320352189|ref|YP_004193528.1| translation factor SUA5 [Desulfobulbus propionicus DSM 2032] gi|320120691|gb|ADW16237.1| translation factor SUA5 [Desulfobulbus propionicus DSM 2032] Length = 205 Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 50/190 (26%), Positives = 86/190 (45%), Gaps = 5/190 (2%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 +A + L G I PT+T+YG+ D N A++R+Y+IK+RP P + ++ + ++ Sbjct: 19 QAVDILQHGGVICYPTDTMYGVGCDIFNQKAVKRVYQIKRRPKDKPFSFMCASLTNISQY 78 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132 V + L + PGP T VL T + + KT RVP ++E G Sbjct: 79 GHVGNTAYRLMRKNLPGPYTFVLS--GTKMVPKIMLTKQKTVGIRVPNHPVCLAMLELLG 136 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192 +P+ SA + K++ LIID G + S+++++ E+ +L Sbjct: 137 NPVLNTSAMIEDDDQPVRTAMDVERLFGKQVDLIIDSG-EIVPAPSSVISLLSEQP-EVL 194 Query: 193 RPGGLEIETL 202 R G +I Sbjct: 195 REGRGDISAF 204 >gi|227501696|ref|ZP_03931745.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium accolens ATCC 49725] gi|227077721|gb|EEI15684.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium accolens ATCC 49725] Length = 222 Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 52/190 (27%), Positives = 92/190 (48%), Gaps = 9/190 (4%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-L 83 + +PT+T+YGL D+ + A+ L K+R P+ V + V+ + P S L Sbjct: 31 VVMPTDTLYGLGCDAFDNDAVANLLATKQRGPDMPVPVLVGSWNTVRGLVASYPDSTRDL 90 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLK-TACFRVPCG-FTKKLIETYGHPLAIPSAN 141 + FWPG L++V+ + P + + + T R+P +L+ G P+A+ SAN Sbjct: 91 VEAFWPGGLSIVVPQAPSL---PWNLGDTRGTVMLRMPLHPIAIELLREVG-PMAVSSAN 146 Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIET 201 SG T + + + K + + +DGG + IG STI+++ + +LR G L E Sbjct: 147 ISGHQPPTTAQ-MAKDQLGKAVTVYLDGGETDIGKPSTIIDLSGDHPY-LLREGALSAEE 204 Query: 202 LKRAISVELE 211 + + V + Sbjct: 205 IGEVLGVSAD 214 >gi|312139169|ref|YP_004006505.1| hypothetical protein REQ_17520 [Rhodococcus equi 103S] gi|325673526|ref|ZP_08153217.1| Sua5/YciO/YrdC/YwlC family protein [Rhodococcus equi ATCC 33707] gi|311888508|emb|CBH47820.1| conserved hypothetical protein [Rhodococcus equi 103S] gi|325555547|gb|EGD25218.1| Sua5/YciO/YrdC/YwlC family protein [Rhodococcus equi ATCC 33707] Length = 219 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 59/203 (29%), Positives = 93/203 (45%), Gaps = 7/203 (3%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 L A L AG + +PT+TVYGL D+ + A+ L K R P+ V + + Sbjct: 16 GLTAAKNSLKAGRLVVLPTDTVYGLGADAFDGDAVASLLRAKGRGRDMPVPVLVGSWNTI 75 Query: 71 KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 SV P + L K FWPG L++V+ + L + T R+P +L+ Sbjct: 76 DGLVYSVRPQARELIKAFWPGGLSIVVQQAPSL-AWDLGDSR-GTVMLRMPLHPVALELL 133 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 G P+A+ SAN SG+ T V + + +DGG + + STIV++ + + Sbjct: 134 RDVG-PMAVSSANISGRPPATTVDEA-RDQLGGAASVYLDGGPATHAVASTIVDLTGD-E 190 Query: 189 VRILRPGGLEIETLKRAISVELE 211 +RILR G + + + V E Sbjct: 191 IRILREGAVPTADVAEVLGVTPE 213 >gi|327405619|ref|YP_004346457.1| translation factor SUA5 [Fluviicola taffensis DSM 16823] gi|327321127|gb|AEA45619.1| translation factor SUA5 [Fluviicola taffensis DSM 16823] Length = 205 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 58/202 (28%), Positives = 101/202 (50%), Gaps = 17/202 (8%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRL---YEIKKRPAMNPLICHV 64 D+ +++ + L G I IPT+ VY +A D N + L ++K A +IC Sbjct: 11 DNRLVQQVVDELKKGGIIIIPTDAVYAVACDVMNKKGLAELAKWKDVKLSKANFSIIC-- 68 Query: 65 SDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 SD+S V ++ +D + L K + PGP T +LD +T+++ L ++ K R+P Sbjct: 69 SDLSEVSEYVKQLDRNTFRLLKHYLPGPFTFILD--ATSEVSKLFDSSKKEIGIRIPDNK 126 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICK----EIPLIIDGGISKIGLES 178 + ++E G+P+A+ S + S + + +SI + E+ +IIDGG K+ S Sbjct: 127 IVQAIVERLGNPMAVTSLHDSEDEIME--YFVDPASIYERYDDEVAIIIDGGPGKLD-AS 183 Query: 179 TIVNVQCEKKVRILRPGGLEIE 200 TIV+ I+R G +I+ Sbjct: 184 TIVDC-TNGNAEIIRQGVGQID 204 >gi|296393118|ref|YP_003658002.1| Sua5/YciO/YrdC/YwlC family protein [Segniliparus rotundus DSM 44985] gi|296180265|gb|ADG97171.1| Sua5/YciO/YrdC/YwlC family protein [Segniliparus rotundus DSM 44985] Length = 214 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 81/185 (43%), Gaps = 4/185 (2%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK-HASVDPLSLHL 83 + +PT+TVYGL D+ + A+ L K R P + + V+ A+V + L Sbjct: 30 VVMPTDTVYGLGCDAFDQGAVAALLSAKGRGRDMPTPVLIGSWATVEGLAATVSDQAWQL 89 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRS 143 FWPGPL+LVL + + T T R+P + P+A+ SANRS Sbjct: 90 IHAFWPGPLSLVLPVAPSLAWDLGETRG--TVMVRMPLHPVALQVLAKVGPMAVSSANRS 147 Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203 GQ + + + ++ G + +G STI+++ + +LR G L + + Sbjct: 148 GQPPARTAAEA-REQLGDSVSVYLESGPAPLGEPSTILDLSSGGEPTVLRQGALSVRQIT 206 Query: 204 RAISV 208 V Sbjct: 207 ETTGV 211 >gi|268593577|ref|ZP_06127798.1| protein RimN [Providencia rettgeri DSM 1131] gi|291310854|gb|EFE51307.1| protein RimN [Providencia rettgeri DSM 1131] Length = 189 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 44/124 (35%), Positives = 57/124 (45%), Gaps = 6/124 (4%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 IA PTE V+GL D + TA+ +L E+K+RP LI +K + + L+ Sbjct: 22 IAYPTEAVFGLGCDPDSETAVYKLLELKQRPWEKGLILIADSYEQLKDYIDDEQLTEEQK 81 Query: 85 KLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGFTKKLIETYGHPLAIPSA 140 + WPGP+T V+ TT T T RV KKL YG PL SA Sbjct: 82 QAMFATWPGPVTWVIPAKVTTP--KWLTGRFDTIAVRVTDHELVKKLCRHYGKPLVSTSA 139 Query: 141 NRSG 144 N SG Sbjct: 140 NLSG 143 >gi|218295665|ref|ZP_03496461.1| Sua5/YciO/YrdC/YwlC family protein [Thermus aquaticus Y51MC23] gi|218243824|gb|EED10351.1| Sua5/YciO/YrdC/YwlC family protein [Thermus aquaticus Y51MC23] Length = 196 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 57/204 (27%), Positives = 92/204 (45%), Gaps = 19/204 (9%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 M+ L +A E L G +A PT+TV+G+ + A RR+Y +K R PL Sbjct: 1 MTEVYQKELAQAAEVLKKGGLVAFPTDTVWGVMARMEDEAACRRIYALKGREEKKPLQVL 60 Query: 64 VSDISMVKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 V+ + + + + PL L LA+ FWPG LT+V + I P + + + R+P Sbjct: 61 VAGLEDALRLSDLGPLEERFLRLAEAFWPGALTIV---VPGRGIPPWISRD-GSVGLRMP 116 Query: 121 C--GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 + L GH A S NRSG+ + + + + P+ GL S Sbjct: 117 AHEALRELLRRVGGHATAT-SLNRSGEPPVK------TEAEARAFPVDFVFPGEATGLAS 169 Query: 179 TIVNVQCEKKVRILRPGGLEIETL 202 ++V+++ + ILR G + E L Sbjct: 170 SVVDLRTGE---ILREGAIPKEAL 190 >gi|306835873|ref|ZP_07468868.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium accolens ATCC 49726] gi|304568238|gb|EFM43808.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium accolens ATCC 49726] Length = 222 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 52/190 (27%), Positives = 92/190 (48%), Gaps = 9/190 (4%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-L 83 + +PT+T+YGL D+ + A+ L K+R P+ V + V+ + P S L Sbjct: 31 VVMPTDTLYGLGCDAFDNDAVANLLATKQRGPDMPVPVLVGSWNTVRGLVASYPDSTRDL 90 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLK-TACFRVPCG-FTKKLIETYGHPLAIPSAN 141 + FWPG L++V+ + P + + + T R+P +L+ G P+A+ SAN Sbjct: 91 VEAFWPGGLSIVVPQAPSL---PWNLGDTRGTVMLRMPLHPIAIELLREVG-PMAVSSAN 146 Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIET 201 SG T + + + K + + +DGG + IG STI+++ + +LR G L E Sbjct: 147 ISGHQPPTTAQ-MAKDQLGKAVTVYLDGGETDIGKPSTIIDLSGDHPY-LLREGALSAEE 204 Query: 202 LKRAISVELE 211 + + V + Sbjct: 205 IGEVLGVSAD 214 >gi|237806935|ref|YP_002891375.1| Sua5/YciO/YrdC/YwlC family protein [Tolumonas auensis DSM 9187] gi|237499196|gb|ACQ91789.1| Sua5/YciO/YrdC/YwlC family protein [Tolumonas auensis DSM 9187] Length = 186 Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 81/183 (44%), Gaps = 7/183 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++AC+ L +G IA TE V+GL D N TA+ +L +IK+RP LI + + Sbjct: 5 LQQACQILRSGGVIAYATEAVFGLGCDPDNETAVHKLLQIKQRPIEKGLILIAASWEQLA 64 Query: 72 KHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + V L+ L A+ WPGP T V +T T + R+ + L Sbjct: 65 PYLDVSLLTEEQLQRAQKSWPGPYTWVFPAKISTP--KWLTGQFSSLAVRISAHPQVQAL 122 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 YG P+ SAN + V+ + S + I I+ G + K S I +V + Sbjct: 123 CLMYGKPMVSTSANLTSLPPCRTVEDV-RSQLTGRIDYILPGDVGKQTNPSEIRDVITNQ 181 Query: 188 KVR 190 +R Sbjct: 182 LIR 184 >gi|117927851|ref|YP_872402.1| translation factor SUA5 [Acidothermus cellulolyticus 11B] gi|117648314|gb|ABK52416.1| translation factor SUA5 [Acidothermus cellulolyticus 11B] Length = 219 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 58/212 (27%), Positives = 101/212 (47%), Gaps = 11/212 (5%) Query: 1 MQIMSITD----SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56 +Q+ +D + L+ A + + G + +PT+TVYG+ D+ P A+ L K R Sbjct: 3 VQVFDCSDPGQRTAGLQAAADAVRRGQLVVLPTDTVYGIGADAFTPAAVAALLAAKGRGR 62 Query: 57 MNPLICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115 P+ V + A+ P + L FWPG LT+V+ + + L N T Sbjct: 63 DMPVPVLVGSRPVFDALVAAAPPTAYALIDAFWPGGLTIVVR-YNPSLAWDLGETN-GTV 120 Query: 116 CFRVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174 R+P +L++ G P+A+ SANRSG T + + + + + + +DGG + Sbjct: 121 ALRMPAEDLALELLQRTG-PMAVSSANRSGLPPATTCANA-RAQLGEAVAVYLDGGPTTS 178 Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAI 206 + S+IV++ E +LR G +E E L+ + Sbjct: 179 TIPSSIVDLTGETPT-LLRSGAIEAERLREVV 209 >gi|269794322|ref|YP_003313777.1| translation factor SUA5 [Sanguibacter keddieii DSM 10542] gi|269096507|gb|ACZ20943.1| translation factor SUA5 [Sanguibacter keddieii DSM 10542] Length = 251 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 95/205 (46%), Gaps = 15/205 (7%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 +L +A + AG + +PT+TVYG+ D+ + A+ L K R P V ++ + Sbjct: 18 SLDEAVNTVQAGALVVLPTDTVYGIGADAFDADAVAALLAAKGRGRQMPPPVLVGSVATL 77 Query: 71 KKHASVDPLSLH-LAKLFWPGPLTLVLDLLST-----TDIHPLSTANLKTACFRVPCGFT 124 A+ P + LA FWPG LTL+L + D H T R+P T Sbjct: 78 DGLATEVPEAARALATRFWPGALTLILTAQPSLAWDLGDTH-------GTVALRMPDHPT 130 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + P+A+ SAN +G + T V+ + + + +D G + G+ STIV+ Sbjct: 131 ALALLARTGPMAVSSANLTGGPAATTVEEA-HAQLGSSVRTYLDAGAAPGGVASTIVDAT 189 Query: 185 CEKKVRILRPGGLEIETLKRAISVE 209 E +R++R G + +E L+ VE Sbjct: 190 GE-TLRVVRAGAISLEELRTVTHVE 213 >gi|157959867|ref|YP_001499901.1| SUA5/yciO/yrdC domain-containing protein [Shewanella pealeana ATCC 700345] gi|212288224|sp|A8GYH9|RIMN_SHEPA RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|157844867|gb|ABV85366.1| SUA5/yciO/yrdC domain [Shewanella pealeana ATCC 700345] Length = 187 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 61/135 (45%), Gaps = 6/135 (4%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH- 73 A E ++ G IA PTE VYGL D N AI +L +IK+RP LI D + + Sbjct: 9 AAELVEQGGVIAYPTEAVYGLGCDPDNDEAINQLLQIKQRPWQKGLILVAGDYQQLLPYI 68 Query: 74 --ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIET 130 + ++ L A+ WPGP T ++ + + L + + RV K L Sbjct: 69 DESQLNAQQLAFAQSKWPGPFTFIMPV--KPGLSKLLSGAFDSIAVRVTAHAGVKALCAA 126 Query: 131 YGHPLAIPSANRSGQ 145 P+ SAN SGQ Sbjct: 127 IHKPIVSTSANLSGQ 141 >gi|317153990|ref|YP_004122038.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio aespoeensis Aspo-2] gi|316944241|gb|ADU63292.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio aespoeensis Aspo-2] Length = 204 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 86/185 (46%), Gaps = 2/185 (1%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 + AG + PTET+Y L D+ + A ++ +IK R A+ PL + + M+ P Sbjct: 8 MTAGDVVVYPTETLYALGCDATSEAACEKVMDIKGRSAVKPLPLIIGGVDMLGLVTDDRP 67 Query: 79 LS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAI 137 + L LA FWPGPL++++ L LS + T+ F +L P+ Sbjct: 68 AALLELASSFWPGPLSILVKALPELP-SCLSDEDGYTSVRWSGHPFASELSRRLRKPIVA 126 Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197 SAN SG++ + + + + + +D K G ST++ V ++ +LR G + Sbjct: 127 TSANLSGEVPVALPEDLSPRLVELAGAVYVDPPWPKGGKPSTVIRVLGATRLEVLREGAV 186 Query: 198 EIETL 202 ++ L Sbjct: 187 SVKKL 191 >gi|160916151|ref|ZP_02078358.1| hypothetical protein EUBDOL_02178 [Eubacterium dolichum DSM 3991] gi|158431875|gb|EDP10164.1| hypothetical protein EUBDOL_02178 [Eubacterium dolichum DSM 3991] Length = 202 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 51/175 (29%), Positives = 86/175 (49%), Gaps = 13/175 (7%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 IA PT+TVYGL V + A+ L K RP P+ V ++ +++ A ++ + LA Sbjct: 24 IAFPTDTVYGLGV-IYDEEALAALKYSKGRPENKPIPTMVGSLAQMEEIAVLNEEAKKLA 82 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANRS 143 F PG T++L + T ++T R+P F +L+ G P+ + SAN S Sbjct: 83 AAFMPGAFTMILK--KKDSVADFVTNGMETIGIRMPQDDFVLELLRQVGSPMLVTSANLS 140 Query: 144 GQISITNVKHILSSSICKEIPLIIDG---GISKIGLESTIVNVQCEKKVRILRPG 195 G+ + ++ + ++ IDG G + + STIV++ K++ILR G Sbjct: 141 GEAT-----GLVDVQVLSQLDGRIDGIVLGEAGGKVASTIVDM-TSGKLKILREG 189 >gi|283957715|ref|ZP_06375168.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus A017934/97] gi|283791166|gb|EFC29981.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus A017934/97] Length = 213 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 53/210 (25%), Positives = 94/210 (44%), Gaps = 31/210 (14%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR---PAMNPLICHVSDISMVKKHAS 75 L G P+ +PT+T Y L N I +++E KKR +++ I D + + + Sbjct: 18 LQDGFPVIVPTDTNYNLCSLPNNDLCIDKIFEYKKRSKDKSLSLFIDKPEDWKLYGDNQN 77 Query: 76 VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPL 135 + + L ++FWPGPL ++L ++ + ++ ++ C V ++ I P+ Sbjct: 78 TEIVD-KLVEIFWPGPLNIILKNKTSYNYMLNNSDSIAIGC--VQNKTMRRFISYINSPI 134 Query: 136 AIPSANRSG---QISIT----------NVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 AI SAN SG I IT NV+++L S + STI+ Sbjct: 135 AITSANISGTANDILITENEAIKHMGENVRYMLRSQ-----------NKTNYKTSSTIIK 183 Query: 183 VQCEKKVRILRPGGLEIETLKRAISVELEY 212 V + K+ +LR G ++ E +K + + Y Sbjct: 184 V-TDNKIELLREGDIKFEEIKERLGTGIIY 212 >gi|332525339|ref|ZP_08401504.1| Sua5/YciO/YrdC/YwlC [Rubrivivax benzoatilyticus JA2] gi|332108613|gb|EGJ09837.1| Sua5/YciO/YrdC/YwlC [Rubrivivax benzoatilyticus JA2] Length = 207 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 58/196 (29%), Positives = 93/196 (47%), Gaps = 12/196 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAV---DSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 L++A E L G +A+PT++ Y L D +RRL I + + L+C D+S Sbjct: 17 LKQAAELLRGGDVLAVPTDSSYALVCRLDDKAAAEQLRRLRGIDDKHLLT-LLCR--DLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKK 126 + +A VD L KL PGP T +LD +T ++ +S + +T RVP T+ Sbjct: 74 ELANYARVDNRQYRLLKLGTPGPYTFILD--ATKEVPRRVSHPSRRTIGLRVPDHQVTQD 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+ YG PL + G N + + K +P IID G + +T++++ E Sbjct: 132 LLAVYGEPLLATTLILPGDDEPLNDVDEIQDRLGKLLPAIIDAGACPME-PTTVLDMTAE 190 Query: 187 KKVRILRPGGLEIETL 202 V ++R G E+ L Sbjct: 191 DPV-LVRQGRGELSRL 205 >gi|315178580|gb|ADT85494.1| translation factor [Vibrio furnissii NCTC 11218] Length = 185 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 63/139 (45%), Gaps = 6/139 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 N + L +G IA PTE V+G+ D NP AI +L ++K+RP LI + Sbjct: 2 NNFEHTLQALQSGEVIAYPTEGVFGVGCDPDNPQAIEKLLQLKQRPVEKGLILIAASYQQ 61 Query: 70 VKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + + L+ L + WPGP+T ++ ++ + + T RV + Sbjct: 62 LLPYIDESQLTQEQLERVQSTWPGPVTWIMP--ASERVSHWVSGQFDTIAVRVTDHPLVQ 119 Query: 126 KLIETYGHPLAIPSANRSG 144 KL YG PL SAN SG Sbjct: 120 KLCLAYGKPLTSTSANLSG 138 >gi|162457645|ref|YP_001620012.1| putative translation factor [Sorangium cellulosum 'So ce 56'] gi|161168227|emb|CAN99532.1| Putative translation factor [Sorangium cellulosum 'So ce 56'] Length = 201 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 52/190 (27%), Positives = 88/190 (46%), Gaps = 7/190 (3%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 +A + + G I PT+TVYG D N AI R+Y+IK L D+S + ++ Sbjct: 17 RAIDLIQKGEVIGYPTDTVYGFGCDLMNKAAIERVYQIKGMRQNKNLAFICPDLSDIARY 76 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYG 132 A V+ + + K + PGP T +L +T ++ KT RVP L+ G Sbjct: 77 AIVENQTYRILKRYLPGPYTFILP--ATREVPKYVHLKQKTVGIRVPNHPVALALVRALG 134 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192 PL +A G+ I + I + L++D G + +T++++ + +V+I+ Sbjct: 135 RPLISTTAAPPGEDPIIDPGEI--DDRFPGLALVLDAGTGG-SVPTTVIDL-SQGEVQIV 190 Query: 193 RPGGLEIETL 202 R G I+ L Sbjct: 191 REGAGPIDDL 200 >gi|119943865|ref|YP_941545.1| ribosome maturation factor [Psychromonas ingrahamii 37] gi|212288218|sp|A1SR31|RIMN_PSYIN RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|119862469|gb|ABM01946.1| translation factor SUA5 [Psychromonas ingrahamii 37] Length = 191 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 11/186 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L A + L + IA PTE+V+GL D AI+++ +K+RPA LI + I ++ Sbjct: 10 LNDALKILKSQGVIAYPTESVFGLGCDPDCEAAIQKILLLKQRPAYKGLILIAASIEQLE 69 Query: 72 KHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 K+A L+ L + K WPGP+T ++ S ++ L + + ++ RV +++ Sbjct: 70 KYADFSLLTAAQLTVIKKTWPGPITWIVP--SQKNLSKLISGDFESVAVRVTAHPIVRQI 127 Query: 128 IETYGHPLAIPSANRS---GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + P+ SAN S +S V + S+ + L+ID +S + + I + Sbjct: 128 CLAFDKPIISTSANLSSLEAALSSQQVNKMFKSNTL--LNLVIDAPVSGLSTPTQIFHAS 185 Query: 185 CEKKVR 190 K++R Sbjct: 186 TGKRLR 191 >gi|330996846|ref|ZP_08320715.1| Sua5/YciO/YrdC/YwlC family protein [Paraprevotella xylaniphila YIT 11841] gi|329572289|gb|EGG53948.1| Sua5/YciO/YrdC/YwlC family protein [Paraprevotella xylaniphila YIT 11841] Length = 202 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 56/194 (28%), Positives = 88/194 (45%), Gaps = 18/194 (9%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP------LICHVSDI 67 KA + L G I PT+TVY + D+ N A+ R+ +K +NP +IC+ D+ Sbjct: 17 KALKMLRDGELIIYPTDTVYAIGCDALNVRAVERICALK---GVNPQKSNLSIICY--DL 71 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126 S + ++A V + L K PGP T + L T+ P N K RVP + Sbjct: 72 SNISEYAQVSNAAFKLLKKNLPGPFTFI---LPTSSRLPKIYKNKKEVGIRVPDNSIARG 128 Query: 127 LIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 L+E G+PL S + + I + ++ + L+IDGG G E++ V Sbjct: 129 LVEGLGNPLLTMSVHDEDEIIEYSTDPELIHEKYEGRVALVIDGGYG--GSEASTVVDCV 186 Query: 186 EKKVRILRPGGLEI 199 + I+R G E+ Sbjct: 187 DDAFEIVRQGKGEL 200 >gi|282918675|ref|ZP_06326412.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp. aureus C427] gi|282317809|gb|EFB48181.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp. aureus C427] Length = 213 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 53/210 (25%), Positives = 92/210 (43%), Gaps = 31/210 (14%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS---DISMVKKHAS 75 L G P+ +PT+T Y L N I +++E KKR PL + D + + + Sbjct: 18 LQDGFPVIVPTDTNYNLCSLPNNDLCIDKIFEYKKRSKDKPLSLFIDKPEDWKLYGDNQN 77 Query: 76 VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPL 135 + + L ++FWPGPL ++L ++ + ++ ++ C V ++ I + Sbjct: 78 TEIVD-KLVEIFWPGPLNIILKNKTSYNYMLNNSDSIAIGC--VQNKTMRRFISYINSAI 134 Query: 136 AIPSANRSG---QISIT----------NVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 AI SAN SG I IT NV+++L S + STI+ Sbjct: 135 AITSANISGTANDILITENEAIKHMGENVRYMLRSQ-----------NKTNYKTSSTIIK 183 Query: 183 VQCEKKVRILRPGGLEIETLKRAISVELEY 212 V + K+ +LR G ++ E +K + + Y Sbjct: 184 V-TDNKIELLREGDIKFEEIKERLGTGIIY 212 >gi|304309712|ref|YP_003809310.1| putative translation factor (SUA5) [gamma proteobacterium HdN1] gi|301795445|emb|CBL43643.1| putative translation factor (SUA5) [gamma proteobacterium HdN1] Length = 193 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/185 (27%), Positives = 89/185 (48%), Gaps = 7/185 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR-PAMNPLICHVSDISMV 70 L +A + L G IA PTE V+GL+ D NP A++R+ ++K+R P+ L+ ++ ++ Sbjct: 8 LPQAVKILHEGGVIACPTEAVWGLSCDPFNPMAVQRILDLKQRDPSKGLLLVAANEQAIA 67 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 A + P+ L + WPGP T ++ + P N R+ +L E Sbjct: 68 PLLAHLAPVLLERLRAHWPGPFTFLIPDPQNW-VPPYVKGNHPHVAVRISAHPLVHRLCE 126 Query: 130 TYGHPLAIPSANRSGQI---SITNVKHILSS-SICKEIPLIIDGGISKIGLESTIVNVQC 185 +G PL SAN+ G S T++++ L++ + P I+ G + I+++ Sbjct: 127 AFGGPLVSTSANQQGAPPARSETDLRNWLNTLENTADRPHILPGSTGGQTNPTRIIDLMS 186 Query: 186 EKKVR 190 + VR Sbjct: 187 GETVR 191 >gi|254515167|ref|ZP_05127228.1| Sua5/YciO/YrdC/YwlC family protein [gamma proteobacterium NOR5-3] gi|219677410|gb|EED33775.1| Sua5/YciO/YrdC/YwlC family protein [gamma proteobacterium NOR5-3] Length = 208 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 53/190 (27%), Positives = 88/190 (46%), Gaps = 14/190 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +R+A + + G I PT++ Y L + A+ R+ I+K + D+S + Sbjct: 17 VRQAADIVRGGGVIVYPTDSAYALGCHIGDKAALDRIRRIRKLDDRHNFTLVCRDLSEIA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKKLIE 129 +A VD + L K + PGP T +L +TT++ L + +T RVP T+ L+ Sbjct: 77 TYARVDNVVYRLLKQYTPGPYTFILK--ATTEVPRRLMQSKRRTIGLRVPDNAITQALLG 134 Query: 130 TYGHPLAIPSANRSGQ----ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 G PL S G I ++ +L E+ L++DGG G+E+T V Sbjct: 135 DLGEPLMSVSLIMPGDELPLIDPYEIRELLE----HEVDLVVDGGYC--GMEATTVVDLA 188 Query: 186 EKKVRILRPG 195 ++K +LR G Sbjct: 189 DEKPMLLRAG 198 >gi|269202591|ref|YP_003281860.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus ED98] gi|262074881|gb|ACY10854.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus ED98] Length = 213 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 53/210 (25%), Positives = 92/210 (43%), Gaps = 31/210 (14%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS---DISMVKKHAS 75 L G P+ +PT+T Y L N I +++E KKR PL + D + + + Sbjct: 18 LQDGFPVIVPTDTNYNLCSLPNNDLCIDKIFEYKKRSKDKPLSLFIDKPEDWKLYGDNQN 77 Query: 76 VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPL 135 + + L ++FW GPL ++L ++ + ++ ++ C V ++ I P+ Sbjct: 78 TEIVD-KLVEIFWSGPLNIILKNKTSYNYMLNNSDSIAIGC--VQNKTMRRFISYINSPI 134 Query: 136 AIPSANRSG---QISIT----------NVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 AI SAN SG I IT NV+++L S + STI+ Sbjct: 135 AITSANISGTADDILITENEAIKHMGENVRYMLRSQ-----------NKTNYKTSSTIIK 183 Query: 183 VQCEKKVRILRPGGLEIETLKRAISVELEY 212 V + K+ +LR G ++ E +K + + Y Sbjct: 184 V-TDNKIELLREGDIKFEEIKERLGTGIIY 212 >gi|77359010|ref|YP_338585.1| double-stranded RNA-binding protein [Pseudoalteromonas haloplanktis TAC125] gi|123587103|sp|Q3IDH7|RIMN_PSEHT RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|76873921|emb|CAI85142.1| putative double-stranded RNA-binding protein with unique protein fold, with YrdC/RibB domain [Pseudoalteromonas haloplanktis TAC125] Length = 187 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 76/169 (44%), Gaps = 11/169 (6%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 ++D + + A L G I PTE VYGL D N A+ RL IK+RP LI Sbjct: 1 MSDQSTIAAAITCLAQGEVILYPTEAVYGLGCDPDNQQAVERLLAIKQRPVEKGLILIAD 60 Query: 66 DISMVKKHASVDPLSLHL---AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 + + K+ VD + + A +F WP +T V+ T T T RV Sbjct: 61 NYGQLLKY--VDDAKIPMDKRADIFSSWPNAITWVMPAAKNT--PKWLTGQYDTIAVRVT 116 Query: 121 CGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 T K+L + +G PL SAN SGQ ++ ++ S ++I +D Sbjct: 117 NHPTVKRLCQEFGKPLVSTSANLSGQNTVLSIAEA-KSQFTEQIGYYVD 164 >gi|311740612|ref|ZP_07714439.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium pseudogenitalium ATCC 33035] gi|311304132|gb|EFQ80208.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium pseudogenitalium ATCC 33035] Length = 223 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 55/200 (27%), Positives = 95/200 (47%), Gaps = 9/200 (4%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH- 73 A + +G + +PT+T+YGL D+ + A+ L K+R P+ V V+ Sbjct: 22 AVKAAQSGRLVVMPTDTLYGLGCDAFDNDAVANLLATKQRGPDMPVPVLVGSWDTVRGLV 81 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK-TACFRVPCG-FTKKLIETY 131 AS + L + FWPG L++V+ + P + + + T R+P +L+ Sbjct: 82 ASYTDTARDLVEAFWPGGLSIVVPQAPSL---PWNLGDTRGTVMLRMPLHPIAIELLREV 138 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 G P+A+ SAN SG T + + K + + +DGG + +G STI+++ E + Sbjct: 139 G-PMAVSSANISGHQPPTTA-LMAKQQLGKAVTVYLDGGETAVGKPSTIIDLSGECPY-L 195 Query: 192 LRPGGLEIETLKRAISVELE 211 LR G L E + I V+ + Sbjct: 196 LREGALSAEEIGEVIGVDAQ 215 >gi|294633614|ref|ZP_06712172.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces sp. e14] gi|292830256|gb|EFF88607.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces sp. e14] Length = 155 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 52/140 (37%), Positives = 70/140 (50%), Gaps = 10/140 (7%) Query: 191 ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL----RAIHV--N 244 ILRPGG+ E L+ A+ L V TST + PG SHYAPR++V L + +H Sbjct: 15 ILRPGGVTREDLEAALGHPL--TVPATSTVRVPGQHPSHYAPRARVVLVAPEKVVHEAEQ 72 Query: 245 PREALIRFGNV-PIKNIENAIISLNLSKT-GKLKEAAFNLFNYMKIADDSGASSIAFSSI 302 RE R G + P E+A+ + + L A L+ +++ D G I S Sbjct: 73 ARELGHRVGVLLPPGLTEDAVPAHAVVPVPDSLTAYARGLYGHLRELDQRGCDLIVASLP 132 Query: 303 PNHGLGIAINNRLERAAAPR 322 GLG+AI NRL RAA PR Sbjct: 133 EEKGLGLAIANRLRRAAGPR 152 >gi|28278078|gb|AAH45238.1| LOC398509 protein [Xenopus laevis] Length = 188 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 88/177 (49%), Gaps = 20/177 (11%) Query: 30 ETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWP 89 +T+YG+A ++N +I +Y +K R PL V ++ + ++ V+ + L + P Sbjct: 1 DTIYGIACLAQNSQSISNIYNVKGRNGTKPLAICVGNVEDIYRYCRVN-VPDQLLRDLLP 59 Query: 90 GPLTLVLDLLS--TTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANRSGQI 146 GP+TLV++ +++P ++ R+P F ++L E PLA+ SAN S Q Sbjct: 60 GPVTLVMERSDRLNKELNPFTSL----VGVRIPDHAFIRQLAEVCSEPLALTSANISSQE 115 Query: 147 SITNVKHILSSSICKEIPLIIDGGISKIG--------LESTIVNVQCEKKVRILRPG 195 S V+ + ++ L++DGG IG L ST+V++ K ++R G Sbjct: 116 STLTVEEF--RDLWPKLSLVVDGG--PIGEHSSPECRLGSTVVDLSVPGKFTVIRDG 168 >gi|326382084|ref|ZP_08203777.1| hypothetical protein SCNU_04032 [Gordonia neofelifaecis NRRL B-59395] gi|326199510|gb|EGD56691.1| hypothetical protein SCNU_04032 [Gordonia neofelifaecis NRRL B-59395] Length = 219 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/189 (28%), Positives = 88/189 (46%), Gaps = 7/189 (3%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLSLHL 83 + +PT+TVYGL D+ + A+ L K R P+ V V SV P + L Sbjct: 30 VVMPTDTVYGLGCDAFDSEAVASLLAAKGRGRDMPVPVLVGSWHTVDGLVRSVSPQAREL 89 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142 + FWPG L+LV++ + T+ + R+P +L+ G P+A+ SAN Sbjct: 90 VQAFWPGGLSLVVEQAPSLAWDLGDTSG--SVMIRMPLHPVAIELLREVG-PMAVSSANI 146 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202 SG T + ++ + +DGG + + STIV++ + +ILR G + E L Sbjct: 147 SGHPPATTAPEA-RDQLQDKVSVYLDGGPADHAVASTIVDLTGPEP-KILREGAITAEHL 204 Query: 203 KRAISVELE 211 + V+ E Sbjct: 205 AEVLDVDAE 213 >gi|298480264|ref|ZP_06998462.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. D22] gi|298273545|gb|EFI15108.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. D22] Length = 187 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 15/150 (10%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 ++KAC+ ++ G I PT+TV+G+ D+ N A+RR+YEIKKR ++ +V Sbjct: 5 IKKACQVMNEGGVILYPTDTVWGIGCDATNEEAVRRVYEIKKRADSKAMLV------LVD 58 Query: 72 KHASVDPLSLHLAKLFW------PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124 VD + + W PLT++ ++ P A + RV F+ Sbjct: 59 SPVKVDFYVQDVPDVAWDLIEVADKPLTIIYS--GARNLAPNLLAEDGSVGIRVTNEDFS 116 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHI 154 ++L + + + SAN SGQ N I Sbjct: 117 RRLCQQFRKAIVSTSANVSGQSGAANFSEI 146 >gi|91216559|ref|ZP_01253525.1| hypothetical protein P700755_03367 [Psychroflexus torquis ATCC 700755] gi|91185353|gb|EAS71730.1| hypothetical protein P700755_03367 [Psychroflexus torquis ATCC 700755] Length = 189 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 53/181 (29%), Positives = 84/181 (46%), Gaps = 9/181 (4%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 + L G I PT+TV+G+ D+ N AI ++Y +K +P LIC V D M+ ++ Sbjct: 13 QILKRGGLILYPTDTVWGIGCDATNAEAIDKIYALKNQPNTKSLICLVPDFKMLNQYVED 72 Query: 77 DPLSLHLAKLFWPGPLTLVLD---LLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGH 133 P + + P T++ +ST I T ++ V F K+LI Y Sbjct: 73 IPEVAYDILKYADKPTTIIYQNPIRISTNLIADDDTLGIRV----VDDIFAKELIRKYKR 128 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS-KIGLESTIVNVQCEKKVRIL 192 P+ SAN SGQ + N I S I + +++ S K STI+ + + KV ++ Sbjct: 129 PIVSTSANISGQPTPANFFEI-SPEILNGVDYVVNLYQSTKNKKPSTIIKLDLDGKVEVI 187 Query: 193 R 193 R Sbjct: 188 R 188 >gi|332521229|ref|ZP_08397687.1| Sua5/YciO/YrdC/YwlC family protein [Lacinutrix algicola 5H-3-7-4] gi|332043322|gb|EGI79519.1| Sua5/YciO/YrdC/YwlC family protein [Lacinutrix algicola 5H-3-7-4] Length = 188 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 88/182 (48%), Gaps = 5/182 (2%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 +A L G I PT+TV+G+ D+ N A++++Y++K R LIC V++ SM++KH Sbjct: 9 EAVTVLKQGGIILYPTDTVWGIGCDATNYNAVKKVYKLKNREESKALICLVNNYSMLEKH 68 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132 P + P T++ D + + ++ N T RV F + LI+ G Sbjct: 69 VDNVPNIAYDILDLAINPTTVIYDNPAGVAENLIAEDN--TLAIRVTQDKFCQHLIKYLG 126 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKKVRI 191 P+ SAN +G + + K I +I K + +++ K STI+ + V+I Sbjct: 127 KPIVSTSANLAGNPTPKSFKEI-DEAILKGVDYVVNLQTEKRSTNPSTIIKLSNNGNVKI 185 Query: 192 LR 193 +R Sbjct: 186 IR 187 >gi|315223600|ref|ZP_07865454.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga ochracea F0287] gi|314946381|gb|EFS98376.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga ochracea F0287] Length = 185 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/138 (33%), Positives = 67/138 (48%), Gaps = 19/138 (13%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 E L AG I PT+TV+GL D+ NP ++ ++++IK+R LI VSD M++ + + Sbjct: 9 EILKAGKIILYPTDTVWGLGCDATNPESVAKIFQIKQRSESKSLIILVSDTEMLQHYVTD 68 Query: 77 DPLSLHLAKLFWPGPLTLVLDLLSTTDI---HPLSTAN-----LKTACFRVPCG-FTKKL 127 P P LT + L T I HPL A T RV F +++ Sbjct: 69 IP----------PKVLTYLQTLQEPTTIIYSHPLHLAKNVIAADNTVAIRVVQDVFCQQM 118 Query: 128 IETYGHPLAIPSANRSGQ 145 I +G P+ SAN SG+ Sbjct: 119 IADFGKPIVSTSANISGE 136 >gi|33519687|ref|NP_878519.1| hypothetical protein Bfl220 [Candidatus Blochmannia floridanus] gi|81666637|sp|Q7VQB9|RIMN_BLOFL RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|33517350|emb|CAD83735.1| putative translation factor (SUA5) [Candidatus Blochmannia floridanus] Length = 189 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 75/155 (48%), Gaps = 9/155 (5%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 E L+ G I PTE+V+GL + N AI L +IK R LI ++ + + K+ Sbjct: 15 EQLNKGKVIVYPTESVFGLGCNPDNENAINTLLKIKCRSWKKGLILVAANYTQLFKYVDD 74 Query: 77 DPL-SLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF--TKKLIETY 131 L SL L+++F WPGP T V S+T + T + RV F ++L T+ Sbjct: 75 RYLNSLQLSRIFSTWPGPFTWVFPARSSTPMW--LTGKFSSVAIRV-SNFEPIRRLCLTF 131 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLI 166 G PL SAN SG + + H + + + P++ Sbjct: 132 GKPLVSTSANVSGYLPARTI-HAVYKQLGYDFPIM 165 >gi|282600503|ref|ZP_05974542.2| protein RimN [Providencia rustigianii DSM 4541] gi|282564965|gb|EFB70500.1| protein RimN [Providencia rustigianii DSM 4541] Length = 201 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 64/148 (43%), Gaps = 6/148 (4%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 ++ M + A++ L IA PTE V+GL D + TA+ +L E+K+RP L Sbjct: 10 LKTMQNQSTPAIKNIINALQQQQVIAYPTEAVFGLGCDPDSETAVNKLLELKQRPWEKGL 69 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 I +K + L+ + WPGP+T V+ TT T T Sbjct: 70 ILIADSYEQLKNYVDDSQLTDQQRQTMFATWPGPVTWVVPAKKTT--PKWLTGKFDTLAV 127 Query: 118 RVPC-GFTKKLIETYGHPLAIPSANRSG 144 RV K+L YG P+ SAN SG Sbjct: 128 RVTNHELVKELCSQYGKPIVSTSANLSG 155 >gi|149910322|ref|ZP_01898965.1| Putative Sua5/YciO/YrdC family protein [Moritella sp. PE36] gi|149806570|gb|EDM66538.1| Putative Sua5/YciO/YrdC family protein [Moritella sp. PE36] Length = 195 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/191 (26%), Positives = 85/191 (44%), Gaps = 7/191 (3%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 +++ +S A+ A L IA PTE V+GL D N A++RL IK+RP LI Sbjct: 8 ITVNNSAAINNAVAALHTQQVIAYPTEAVFGLGCDPMNELAVQRLLTIKQRPVEKGLILI 67 Query: 64 VSDISMVKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 ++++ + + + LS + K WPGP T V+ + + T + RV Sbjct: 68 AANLAQLNDYVDLTRLSATQIDKIKQTWPGPATWVMP--AKAQVPKWLTGQFDSIAVRVS 125 Query: 121 CGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 T + L +G P+ SAN +G + +S + + I+D + ++ +T Sbjct: 126 AHPTVQALCLAFGGPITSTSANLTGLTPCITAAEV-ASQLELLLGAIVDEAVGELAQPTT 184 Query: 180 IVNVQCEKKVR 190 I + K R Sbjct: 185 ITDALTGKIYR 195 >gi|71276454|ref|ZP_00652730.1| SUA5/yciO/yrdC, N-terminal [Xylella fastidiosa Dixon] gi|71901273|ref|ZP_00683372.1| SUA5/yciO/yrdC, N-terminal [Xylella fastidiosa Ann-1] gi|170731006|ref|YP_001776439.1| hypothetical protein Xfasm12_1935 [Xylella fastidiosa M12] gi|71162770|gb|EAO12496.1| SUA5/yciO/yrdC, N-terminal [Xylella fastidiosa Dixon] gi|71728964|gb|EAO31096.1| SUA5/yciO/yrdC, N-terminal [Xylella fastidiosa Ann-1] gi|167965799|gb|ACA12809.1| conserved hypothetical protein [Xylella fastidiosa M12] Length = 209 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 85/190 (44%), Gaps = 5/190 (2%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 S+ + L +A L G IA PTE V+GL D R TA+ L IK+R + LI Sbjct: 22 SMATTLTLSEAVTALQQGGVIAYPTEAVWGLGCDPRQETAVHTLLNIKQRASGKGLILVT 81 Query: 65 SDISMVKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 ++++ ++ +D LS LH + WPGP T VL ST H ++ + A Sbjct: 82 AELNTLQDWLDLDTLSPERLHEVQASWPGPHTWVLP-ASTRAPHWITGHHNGLAVRISAH 140 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 L + L SAN +GQ S + L S+ + I+DG + ++I Sbjct: 141 PLVSALCRAWNMALISTSANVAGQ-SPARRREDLDPSLLPHLAGIVDGPTGGLAQPTSIR 199 Query: 182 NVQCEKKVRI 191 + + +R+ Sbjct: 200 DARSGHILRL 209 >gi|212693543|ref|ZP_03301671.1| hypothetical protein BACDOR_03060 [Bacteroides dorei DSM 17855] gi|237708701|ref|ZP_04539182.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|237724150|ref|ZP_04554631.1| conserved hypothetical protein [Bacteroides sp. D4] gi|265756027|ref|ZP_06090494.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 3_1_33FAA] gi|212663796|gb|EEB24370.1| hypothetical protein BACDOR_03060 [Bacteroides dorei DSM 17855] gi|229437338|gb|EEO47415.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] gi|229457127|gb|EEO62848.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|263234105|gb|EEZ19706.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 3_1_33FAA] Length = 204 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 60/194 (30%), Positives = 83/194 (42%), Gaps = 21/194 (10%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSDISMV 70 L + L+ G I PT+T+Y + AI R+ ++K P N L D+S + Sbjct: 15 LEEVIRILEEGGLIIYPTDTMYAIGCHGLKERAIERICKLKNIDPRKNNLSIICYDLSNI 74 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP--------CG 122 ++A VD + L K PGP T +L+ T + P N K RVP C Sbjct: 75 SEYAKVDNSTFKLMKRNLPGPFTFILN---TGNRLPKIFKNRKEVGIRVPDNNIIREICH 131 Query: 123 FTKKLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 K I T PL + G+ I ++ KE+ LIIDGGI I STIV Sbjct: 132 ILKAPIMTTTLPL------KDGEDIEYITTPELIEEKFGKEVELIIDGGIGNIE-PSTIV 184 Query: 182 NVQCEKKVRILRPG 195 N + I+R G Sbjct: 185 NCT-SGEAEIVRQG 197 >gi|224026570|ref|ZP_03644936.1| hypothetical protein BACCOPRO_03327 [Bacteroides coprophilus DSM 18228] gi|224019806|gb|EEF77804.1| hypothetical protein BACCOPRO_03327 [Bacteroides coprophilus DSM 18228] Length = 203 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 51/192 (26%), Positives = 90/192 (46%), Gaps = 13/192 (6%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK---RPAMNPLICHVSD 66 + +++ + L+ G I PT+T+Y + + I R+ ++KK R +IC+ D Sbjct: 13 DDIQRVVDILNDGGIIIYPTDTMYAIGCHALKERPIERICKLKKIDPRKHNLSIICY--D 70 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125 +S + ++A V+ + L K PGP T +L+ S P N K RVP + Sbjct: 71 LSNISEYARVNNATFKLMKRCLPGPFTFILNADSRL---PKIFRNRKEVGIRVPDNNIIR 127 Query: 126 KLIETYGHPLAIPSANRSGQISITNVK--HILSSSICKEIPLIIDGGISKIGLESTIVNV 183 ++ + P+ + R I V ++ +E+ L+IDGGI G+ES+ V Sbjct: 128 EICRSLDAPILTTTLPREEHEDIEYVTDPELIDEKFGEEVDLVIDGGIG--GIESSTVID 185 Query: 184 QCEKKVRILRPG 195 C+ + I+R G Sbjct: 186 CCDDEPEIIRQG 197 >gi|25027862|ref|NP_737916.1| hypothetical protein CE1306 [Corynebacterium efficiens YS-314] gi|259506253|ref|ZP_05749155.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium efficiens YS-314] gi|23493145|dbj|BAC18116.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] gi|259166157|gb|EEW50711.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium efficiens YS-314] Length = 216 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 54/206 (26%), Positives = 96/206 (46%), Gaps = 13/206 (6%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP---LICHVSDI 67 L+ A + + AG + +PT+T+YGL D+ N A+ L K R P L+ I Sbjct: 16 GLKAAVDAVKAGQLVVLPTDTLYGLGCDAFNNQAVANLLATKHRGPDMPVPVLVGSWDTI 75 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK-TACFRVPCG-FTK 125 + +H S + L + FWPG L++++ + P + + + T R+P Sbjct: 76 QGLVQHYSEQART--LVQAFWPGGLSIIVPQAPSL---PWNLGDTRGTVMLRMPLHPVAI 130 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +L+ G P+A+ SAN SG + V + + + + +DGG IG S+I+++ Sbjct: 131 ELLRETG-PMAVSSANISGHTPPSTVTEA-RQQLNQNVSVYLDGGECAIGKPSSIIDISG 188 Query: 186 EKKVRILRPGGLEIETLKRAISVELE 211 ++LR G + E + + V E Sbjct: 189 PHP-KLLREGAISAERIGEVLGVTAE 213 >gi|150004545|ref|YP_001299289.1| hypothetical protein BVU_1995 [Bacteroides vulgatus ATCC 8482] gi|254882717|ref|ZP_05255427.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|319643977|ref|ZP_07998552.1| hypothetical protein HMPREF9011_04155 [Bacteroides sp. 3_1_40A] gi|149932969|gb|ABR39667.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482] gi|254835510|gb|EET15819.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|317384501|gb|EFV65468.1| hypothetical protein HMPREF9011_04155 [Bacteroides sp. 3_1_40A] Length = 204 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 60/194 (30%), Positives = 83/194 (42%), Gaps = 21/194 (10%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSDISMV 70 L + L+ G I PT+T+Y + AI R+ ++K P N L D+S + Sbjct: 15 LEEVIRILEEGGLIIYPTDTMYAIGCHGLKERAIERICKLKNIDPRKNNLSIICYDLSNI 74 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP--------CG 122 ++A VD + L K PGP T +L+ T + P N K RVP C Sbjct: 75 SEYAKVDNSTFKLMKRNLPGPFTFILN---TGNRLPKIFKNRKEVGIRVPDNNIIREICH 131 Query: 123 FTKKLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 K I T PL + G+ I ++ KE+ LIIDGGI I STIV Sbjct: 132 ILKAPIMTTTLPL------KDGEDIEYITTPELIEEKFGKEVELIIDGGIGSIE-PSTIV 184 Query: 182 NVQCEKKVRILRPG 195 N + I+R G Sbjct: 185 NCT-NGEAEIVRQG 197 >gi|94987331|ref|YP_595264.1| hypothetical protein LI0889 [Lawsonia intracellularis PHE/MN1-00] gi|94731580|emb|CAJ54943.1| conserved hypothetical protein [Lawsonia intracellularis PHE/MN1-00] Length = 210 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 89/188 (47%), Gaps = 6/188 (3%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVD-SRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +L++A F++ G I PTET +GL N I++++ K+R PL + + Sbjct: 6 SLKEAVNFINQGKLIIFPTETFFGLGCKIFNNEDTIQQIFIAKQRAINMPLPLIIGNWEQ 65 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + A V + L + FWPG L++VL+ + +I P TA+ + R+ K++ Sbjct: 66 LTITAEVPQIIYPLLQHFWPGALSIVLN--AKKNISPYITASTQKVAVRLSSHPIAKEIA 123 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID-GGISKIGLESTIVNVQCEK 187 + G P+ SAN + +T + L + I IID I GL ST++ + Sbjct: 124 DLVGEPIIATSANINKNPPVTKITQ-LDIRLYPYIEGIIDIPPIPTGGLPSTLIELHPNN 182 Query: 188 KVRILRPG 195 + ILR G Sbjct: 183 TISILREG 190 >gi|92114981|ref|YP_574909.1| SUA5/yciO/yrdC-like protein [Chromohalobacter salexigens DSM 3043] gi|122419275|sp|Q1QTJ8|RIMN_CHRSD RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|91798071|gb|ABE60210.1| translation factor SUA5 [Chromohalobacter salexigens DSM 3043] Length = 185 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/187 (26%), Positives = 82/187 (43%), Gaps = 12/187 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++ + A L G +A PTE V+GL D + A+ RL +K+R LI D+ Sbjct: 5 ADRIADAVAALRRGALLAYPTEAVWGLGCDPDDDAALARLIALKQRDPAKGLILIAGDMD 64 Query: 69 MVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 ++ A +D L WPGP T ++ PL + RV ++ Sbjct: 65 QLEPWLAGLDALQRARLAESWPGPNTWLVP--DNGRARPLLRGEHTSLAVRVSDHPLVRQ 122 Query: 127 LIETYGHPLAIPSANRSGQ---ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 L +G PL SANR+G+ +S +V+ ++ ++DG + STI ++ Sbjct: 123 LCAAFGGPLVSSSANRAGEPPAMSAADVRAAFGEAVT-----LLDGALGGYARPSTIRDL 177 Query: 184 QCEKKVR 190 Q + +R Sbjct: 178 QSGETLR 184 >gi|312129970|ref|YP_003997310.1| translation factor sua5 [Leadbetterella byssophila DSM 17132] gi|311906516|gb|ADQ16957.1| translation factor SUA5 [Leadbetterella byssophila DSM 17132] Length = 205 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 55/192 (28%), Positives = 87/192 (45%), Gaps = 9/192 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNP--LICHV 64 D +++ E L G I PT+TVY + +S + A+ +L +IK +P N ++CH Sbjct: 14 DMRKIKQVVECLMDGGIIIYPTDTVYSMGCNSYHNKAVEKLCKIKGIKPNQNKFSIVCH- 72 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 D+S + +A V + K + PGP T +L ST ++ L + KT RVP Sbjct: 73 -DLSDIATYAKVSNEAFRTMKQYLPGPYTFILP--STNELPKLLQTSRKTIGIRVPDHMI 129 Query: 125 -KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + LI+ G P+ S N ++ +IIDGG I + STIV+ Sbjct: 130 PQTLIKELGRPIITTSVKYDDIREYPNEIEVIYEENMYLADIIIDGGWCGI-VPSTIVDC 188 Query: 184 QCEKKVRILRPG 195 ++R G Sbjct: 189 TDPDHFEVIREG 200 >gi|319441090|ref|ZP_07990246.1| hypothetical protein CvarD4_04907 [Corynebacterium variabile DSM 44702] Length = 218 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 57/193 (29%), Positives = 88/193 (45%), Gaps = 15/193 (7%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLSLHL 83 I +PT+TVYG+ D+ + A+ L K R P V V D L Sbjct: 30 IVMPTDTVYGIGADAFDNDAVAALLVAKHRGPDYPTPVVVGSWDTVTGLVRDADARMKAL 89 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLK-TACFRVPCG-FTKKLIETYGHPLAIPSAN 141 + FWPG LT+V + P + + + T R+P +L++ G P+A+ SAN Sbjct: 90 VEAFWPGGLTIVTHQAPSL---PWNLGDTRGTVALRMPLHPVAIELLQQTG-PMALSSAN 145 Query: 142 RSGQ---ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLE 198 GQ +S + L S+ + +DGG + IG STIV++ ++ RILR G +E Sbjct: 146 VHGQPSALSAAQAREQLGDSVS----VYLDGGPATIGTSSTIVDLSG-RRPRILRHGAIE 200 Query: 199 IETLKRAISVELE 211 + + V E Sbjct: 201 AARVAEVLGVPEE 213 >gi|269128125|ref|YP_003301495.1| Sua5/YciO/YrdC/YwlC family protein [Thermomonospora curvata DSM 43183] gi|268313083|gb|ACY99457.1| Sua5/YciO/YrdC/YwlC family protein [Thermomonospora curvata DSM 43183] Length = 216 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 52/182 (28%), Positives = 87/182 (47%), Gaps = 7/182 (3%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV-SDISMVKKHASVDPLSLHL 83 + +PT+TVYG+ + P A+ L + K R P + S ++ P L Sbjct: 30 VVLPTDTVYGVGCGAFLPDAVDALLKAKGRGRQMPAPVLIGSPEALADLVTDTGPYGPAL 89 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142 + FWPG LTLV + L A T R+P +L+ G P+A+ SAN Sbjct: 90 IEEFWPGALTLVFPAVPGL-ARVLGDAQ-GTVAVRMPRDELALELLREAG-PMAVSSANL 146 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202 +G+ + + + + + + +DGG + +G S+IV++ ++ R+LR G L ETL Sbjct: 147 TGRPAARTAGEAF-AQLGESVAVYLDGGPAPLGEPSSIVDLSGDEP-RLLRAGALAAETL 204 Query: 203 KR 204 +R Sbjct: 205 RR 206 >gi|72162816|ref|YP_290473.1| translation factor SUA5 [Thermobifida fusca YX] gi|71916548|gb|AAZ56450.1| translation factor SUA5 [Thermobifida fusca YX] Length = 259 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 54/184 (29%), Positives = 89/184 (48%), Gaps = 13/184 (7%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-- 82 + +PT+TVYG+ D+ NP A+ L K+R +P V + + A +D L + Sbjct: 30 VVLPTDTVYGVGADAFNPAAVTALRNAKQRGREHPPAVLVGTVRAAQ--ALIDDLGKYGQ 87 Query: 83 -LAKLFWPGPLTLVLDLLSTTDIHPLSTANLK-TACFRVPC-GFTKKLIETYGHPLAIPS 139 L + FWPGPLTLV + T + K T R+P +L++ G P+A+ Sbjct: 88 DLIEEFWPGPLTLV---CAATPSLSWDLGDTKGTVAVRMPMHPVALELLKEVG-PMAVSG 143 Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEI 199 AN +G+ + T V+ + + + +D G STIV++ R+LR G + + Sbjct: 144 ANVTGKPAATTVEEA-ETQFGDAVSVYLDAGPCTSTPPSTIVDLTYAVP-RVLRSGAITL 201 Query: 200 ETLK 203 E L+ Sbjct: 202 EQLR 205 >gi|86147122|ref|ZP_01065438.1| Sua5/YciO/YrdC family protein [Vibrio sp. MED222] gi|85835006|gb|EAQ53148.1| Sua5/YciO/YrdC family protein [Vibrio sp. MED222] Length = 185 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/190 (23%), Positives = 86/190 (45%), Gaps = 10/190 (5%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + + + L G IA PTE V+G+ D NP AI++L ++K+RP LI + Sbjct: 2 DNFQHTLQALQQGEVIAYPTEGVFGVGCDPDNPQAIKKLLDLKQRPMEKGLILIAASYEQ 61 Query: 70 VKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + + L+ L K WPGP+T ++ +++ + + ++ RV + Sbjct: 62 LLPYIDESQLTEAQLATVKATWPGPVTWIMP--TSSKVTDWVSGQFESIAVRVTDHPLVQ 119 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 ++ +G PL SAN +G+ + + + + + I++G + G ++ Sbjct: 120 RMCNEFGKPLTSTSANLTGESPCMTTEEV-QQQLGQHLVAILEG---QTGGREKPSEIRD 175 Query: 186 EKKVRILRPG 195 K +ILR G Sbjct: 176 AKTSKILRQG 185 >gi|33239812|ref|NP_874754.1| putative translation factor (SUA5) [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33237338|gb|AAP99406.1| Putative translation factor (SUA5) [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 195 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 58/191 (30%), Positives = 97/191 (50%), Gaps = 16/191 (8%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 ++ ++LD G P+ IPT+T+ LA +N AI L+ IKKRP PLI S + K Sbjct: 9 KELLQYLDKGSPVLIPTDTLPALATFPKN--AI-ELWNIKKRPKSKPLILMGSTTDQLLK 65 Query: 73 HASVDPL----SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + V P+ ++ + +WPG LT+VL ++ +I + + R+P C + Sbjct: 66 Y--VLPVAIKDAIRMCSSYWPGALTIVLP--ASGEIVQSLNPSGDSIGIRIPACEVSMDF 121 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID-GGISKIGLESTIVNVQCE 186 + G PLA SAN SGQ ++ + + S ++PL+ + GL ST++ + Sbjct: 122 LNKSG-PLATTSANLSGQETLIDPYEL--SQCFPKLPLLSPVPWPTSSGLASTLIKWKSP 178 Query: 187 KKVRILRPGGL 197 K ++LR G + Sbjct: 179 GKWQLLRRGAV 189 >gi|19552426|ref|NP_600428.1| putative translation factor (SUA5) [Corynebacterium glutamicum ATCC 13032] gi|62390090|ref|YP_225492.1| translation factor (SUA5) [Corynebacterium glutamicum ATCC 13032] gi|21323969|dbj|BAB98595.1| Putative translation factor (SUA5) [Corynebacterium glutamicum ATCC 13032] gi|41325426|emb|CAF19906.1| Putative translation factor (SUA5) [Corynebacterium glutamicum ATCC 13032] Length = 216 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 57/209 (27%), Positives = 96/209 (45%), Gaps = 11/209 (5%) Query: 8 DSNA--LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 DS A L+ A + + AG + +PT+T+YGL D+ N A+ L K R P+ V Sbjct: 11 DSRAAGLKAAVDAVKAGQLVVLPTDTLYGLGCDAFNNEAVANLLATKHRGPDMPVPVLVG 70 Query: 66 DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK-TACFRVPCG- 122 ++ S + L + FWPG L++++ + P + + + T R+P Sbjct: 71 SWDTIQGLVHSYSAQAKALVEAFWPGGLSIIVPQAPSL---PWNLGDTRGTVMLRMPLHP 127 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 +L+ G P+A+ SAN SG T V + + + + +DGG + STIV+ Sbjct: 128 VAIELLRQTG-PMAVSSANISGHTPPTTVLEA-RQQLNQNVAVYLDGGECALATPSTIVD 185 Query: 183 VQCEKKVRILRPGGLEIETLKRAISVELE 211 + +ILR G + E + + V E Sbjct: 186 ISGPAP-KILREGAISAERVGEVLGVSAE 213 >gi|302542526|ref|ZP_07294868.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces hygroscopicus ATCC 53653] gi|302460144|gb|EFL23237.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces himastatinicus ATCC 53653] Length = 215 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 61/208 (29%), Positives = 94/208 (45%), Gaps = 25/208 (12%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 LR+A + G + +PT+TVYG+ D+ + A+ L E K R P V + Sbjct: 15 TGLREAASAVRRGELVVLPTDTVYGIGADAFSAEAVGDLLEAKGRGRNMPTPVLVGSPNT 74 Query: 70 VKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANL----KTACFRVPCG 122 + H V S L FWPG LTLV P T +L T R+P Sbjct: 75 L--HGLVTDFSEQAWELVDAFWPGALTLV------ARHQPSLTWDLGETRGTVAVRMPLH 126 Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITN---VKHILSSSICKEIPLIIDGGISKIGLES 178 +L+ +G P+A+ SAN +G S + + +L S+ + +DGG + + S Sbjct: 127 PVAIELLNDFG-PMAVSSANLTGHPSPQDCDAAQDMLGDSVS----VYLDGGPTPAAVPS 181 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAI 206 +IV+V + V +LR G L E L+ + Sbjct: 182 SIVDVTGKVPV-LLRAGALSAEQLREVV 208 >gi|262392839|ref|YP_003284693.1| YrdC family protein [Vibrio sp. Ex25] gi|262336433|gb|ACY50228.1| YrdC family protein [Vibrio sp. Ex25] Length = 185 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/181 (27%), Positives = 79/181 (43%), Gaps = 10/181 (5%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH---AS 75 L G IA PTE V+G+ D NP AI++L E+K+RP LI + + + + Sbjct: 11 LQQGEVIAYPTEGVFGVGCDPDNPEAIQKLLELKQRPVEKGLILIAASYEQLLPYIDESQ 70 Query: 76 VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134 + P L WPGP T ++ ++ + + + RV +K+ +G P Sbjct: 71 LTPEQLATVHATWPGPYTWIMP--ASDKVSNWVSGQFDSIAVRVTDHPLVQKMCNAFGKP 128 Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194 L SAN SG N + + + ++ I+ G S S I + K +ILR Sbjct: 129 LTSTSANLSGLPPCMNTEEV-EQQLGDKLVAILRGETSGRDKPSEIRDA---KTSQILRQ 184 Query: 195 G 195 G Sbjct: 185 G 185 >gi|332293598|ref|YP_004432207.1| Sua5/YciO/YrdC/YwlC family protein [Krokinobacter diaphorus 4H-3-7-5] gi|332171684|gb|AEE20939.1| Sua5/YciO/YrdC/YwlC family protein [Krokinobacter diaphorus 4H-3-7-5] Length = 186 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 89/190 (46%), Gaps = 23/190 (12%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A L G I PT+TV+G+ D+ NP A+ ++Y +KKR LIC VSD M+ ++ Sbjct: 8 ALAVLKRGGLILYPTDTVWGIGCDATNPDAVDKVYALKKRAESKSLICLVSDFKMLNQYI 67 Query: 75 SVDPLSLHLAKLFWPGPLTLVLD---LLSTTDIHPLSTANLKTACFRVPCGFTKKLIETY 131 P + + P T++ D ++T I P ++ + C C F L++ + Sbjct: 68 ENIPEVAYDILKYAAKPTTIIYDDPIRIATNVIAPDNSTAFR-VCRNQFCNF---LLKKF 123 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE--------STIVNV 183 P+ SAN +G+ + + S I +E IIDG + L+ S I+ + Sbjct: 124 RKPIVSTSANITGKPTPQSF-----SEISQE---IIDGVDYVVNLDRDRTSTKPSAIIKL 175 Query: 184 QCEKKVRILR 193 + KV I+R Sbjct: 176 TEDGKVTIIR 185 >gi|50122916|ref|YP_052083.1| putative DNA topoisomerase [Pectobacterium atrosepticum SCRI1043] gi|49613442|emb|CAG76893.1| putative DNA topoisomerase [Pectobacterium atrosepticum SCRI1043] Length = 372 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/127 (37%), Positives = 62/127 (48%), Gaps = 10/127 (7%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83 IA PTE V+GL D + A+ RL +K+RP LI ++ S + + + LS Sbjct: 205 IAYPTEAVFGLGCDPDSEVAVNRLLALKQRPWQKGLILIAANFSQLVPYINDSALSDEQK 264 Query: 84 AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRV---PCGFTKKLIETYGHPLAIP 138 A +F WPGP+T VL TT T + RV P K+L + YG PL Sbjct: 265 AMMFSTWPGPVTWVLPAKPTTP--QWLTGQFSSLAVRVSDHP--LVKELCQHYGKPLVST 320 Query: 139 SANRSGQ 145 SAN SGQ Sbjct: 321 SANLSGQ 327 >gi|148978490|ref|ZP_01814964.1| Sua5/YciO/YrdC family protein [Vibrionales bacterium SWAT-3] gi|145962397|gb|EDK27677.1| Sua5/YciO/YrdC family protein [Vibrionales bacterium SWAT-3] Length = 185 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/190 (24%), Positives = 84/190 (44%), Gaps = 10/190 (5%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + + + L G IA PTE V+G+ D NP AI++L E+K+RP LI + Sbjct: 2 DNFQHTLQALHQGEVIAYPTEGVFGVGCDPDNPHAIKKLLELKQRPVEKGLILIAASYEQ 61 Query: 70 VKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + + L+ L K WPGP+T ++ ++ + + + RV + Sbjct: 62 LLPYIDESQLTDEQLATVKATWPGPVTWIMP--TSAKVTDWVSGQFDSLAVRVTDHPLVQ 119 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 ++ +G PL SAN +G+ + + + + + I++G K G ++ Sbjct: 120 RMCNEFGKPLTSTSANLTGEPPCMTTEEV-QQQLGQHLVAILEG---KTGGRDKPSEIRD 175 Query: 186 EKKVRILRPG 195 K +ILR G Sbjct: 176 AKTSKILRQG 185 >gi|256390409|ref|YP_003111973.1| Sua5/YciO/YrdC/YwlC family protein [Catenulispora acidiphila DSM 44928] gi|256356635|gb|ACU70132.1| Sua5/YciO/YrdC/YwlC family protein [Catenulispora acidiphila DSM 44928] Length = 216 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 58/204 (28%), Positives = 92/204 (45%), Gaps = 20/204 (9%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR-PAMNPLICHVSDIS 68 LR+A + G + +PT+T+YG+ D+ A+R L E K R PAM + S + Sbjct: 15 TGLREAASAVRRGELVVLPTDTLYGIGADAFTNWAVRALLEAKGRGPAMPSPVLVPSPAT 74 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIH-PLSTANL----KTACFRVPCGF 123 + A + + L FWPG LT+V +H P T +L T R+P Sbjct: 75 LHGLVAGMPSVGWELVDAFWPGGLTIVA-------MHQPTLTWDLGETRGTVAVRMPLHP 127 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE---STI 180 + T P+A+ SAN++G + + + + +D G K+G E S+I Sbjct: 128 VAIELLTETGPMAVSSANKTGMAAAQTAVDA-QDQLGDAVSVYLDAG--KVGGEGGASSI 184 Query: 181 VNVQCEKKVRILRPGGLEIETLKR 204 V+V V +LR G L + L+ Sbjct: 185 VDVTGTAPV-LLREGALTFDQLRE 207 >gi|312137347|ref|YP_004004684.1| translation factor sua5 [Methanothermus fervidus DSM 2088] gi|311225066|gb|ADP77922.1| translation factor SUA5 [Methanothermus fervidus DSM 2088] Length = 196 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 56/181 (30%), Positives = 92/181 (50%), Gaps = 12/181 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + L K L G I PT+T+YGL ++ + AI+++Y IKKR P+ V ++ Sbjct: 13 TKVLNKVRRMLAEGKVIIYPTDTLYGLGANAFDEDAIKKVYSIKKRSFDKPISICVPNMR 72 Query: 69 MVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVP-CGFTK 125 ++K A + D ++KL PGP T++L+ DI P + TA K R+P + Sbjct: 73 WIRKVAYLNDKQKEKISKLL-PGPYTIILE---KKDIIPDVLTAGKKKVGIRIPKSKISI 128 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +L + + P+ SAN SG+ + VK I+ K + L ID G + G ST+++ Sbjct: 129 ELAKEF--PITATSANISGRETPPTVKEIIKQ--LKNVDLAIDVGPLR-GEPSTVIDFTT 183 Query: 186 E 186 + Sbjct: 184 D 184 >gi|212288257|sp|B0U4N0|RIMN_XYLFM RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN Length = 187 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 82/183 (44%), Gaps = 5/183 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +A L G IA PTE V+GL D R TA+ L IK+R + LI ++++ ++ Sbjct: 7 LSEAVTALQQGGVIAYPTEAVWGLGCDPRQETAVHTLLNIKQRASGKGLILVTAELNTLQ 66 Query: 72 KHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128 +D LS LH + WPGP T VL ST H ++ + A L Sbjct: 67 DWLDLDTLSPERLHEVQASWPGPHTWVLP-ASTRAPHWITGHHNGLAVRISAHPLVSALC 125 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 + L SAN +GQ S + L S+ + I+DG + ++I + + Sbjct: 126 RAWNMALISTSANVAGQ-SPARRREDLDPSLLPHLAGIVDGPTGGLAQPTSIRDARSGHI 184 Query: 189 VRI 191 +R+ Sbjct: 185 LRL 187 >gi|227115514|ref|ZP_03829170.1| putative DNA topoisomerase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 189 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 67/147 (45%), Gaps = 7/147 (4%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83 IA PTE V+GL D + A+ RL +K+RP LI +D S + + LS Sbjct: 22 IAYPTEAVFGLGCDPDSEVAVNRLLALKQRPWQKGLILIAADFSQLAPYIDDSALSDEQK 81 Query: 84 AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140 A +F WPGP+T VL TT T + RV K+L YG PL SA Sbjct: 82 AVMFSTWPGPVTWVLPAKRTT--PQWLTGQFSSLAVRVSDHPLVKELCLRYGKPLVSTSA 139 Query: 141 NRSGQISITNVKHILSSSICKEIPLII 167 N SG+ + + S + P+++ Sbjct: 140 NLSGKPPCRTAQEV-SLQFGDDFPVLV 165 >gi|189461153|ref|ZP_03009938.1| hypothetical protein BACCOP_01800 [Bacteroides coprocola DSM 17136] gi|189432132|gb|EDV01117.1| hypothetical protein BACCOP_01800 [Bacteroides coprocola DSM 17136] Length = 203 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 57/197 (28%), Positives = 84/197 (42%), Gaps = 17/197 (8%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVS 65 DS+ L+ + L+ G I PT+T+Y + + I R+ ++K P N L Sbjct: 10 NDSDVLQHIVDILNDGGIIIYPTDTMYAMGCHALKERPIERICKLKNIDPRKNNLSIICC 69 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125 D+S + ++A V + L K PGP T VL+ S P N K RVP Sbjct: 70 DLSNISEYARVSNATFKLMKRNLPGPFTFVLNADSRL---PKIFRNRKEVGIRVP---DN 123 Query: 126 KLIETYGHPLAIP------SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-S 178 +I H L P N + ++ E+ L+IDGGI G+E S Sbjct: 124 NIIREICHLLDAPILTTTLPLNPDEDVEYVTDPELIDEKFGSEVDLVIDGGIG--GVEPS 181 Query: 179 TIVNVQCEKKVRILRPG 195 T++N CE I+R G Sbjct: 182 TVINC-CEDVPEIIRQG 197 >gi|84393448|ref|ZP_00992205.1| Sua5/YciO/YrdC family protein [Vibrio splendidus 12B01] gi|84375964|gb|EAP92854.1| Sua5/YciO/YrdC family protein [Vibrio splendidus 12B01] Length = 185 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/190 (23%), Positives = 86/190 (45%), Gaps = 10/190 (5%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + + + L G IA PTE V+G+ D NP AI++L ++K+RP LI + Sbjct: 2 DNFQHTLQALQQGEVIAYPTEGVFGVGCDPDNPQAIKKLLDLKQRPMEKGLILIAASYEQ 61 Query: 70 VKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + + L+ L K WPGP+T ++ +++ + + ++ RV + Sbjct: 62 LLPYIDESQLTEAQLATVKATWPGPVTWIMP--TSSKVTDWVSGQFESIAVRVTDHPLVQ 119 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 ++ +G PL SAN +G+ + + + + + I++G + G ++ Sbjct: 120 RMCNEFGKPLTSTSANLTGEPPCMTTEEV-QQQLGQHLVAILEG---QTGGREKPSEIRD 175 Query: 186 EKKVRILRPG 195 K +ILR G Sbjct: 176 AKTSKILRQG 185 >gi|163803308|ref|ZP_02197186.1| Sua5/YciO/YrdC family protein [Vibrio sp. AND4] gi|159172878|gb|EDP57717.1| Sua5/YciO/YrdC family protein [Vibrio sp. AND4] Length = 185 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 6/138 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 K E L G IA PTE V+G+ D NP AI++L +K+RP LI + + Sbjct: 4 FEKVLEALQNGEVIAYPTEGVFGVGCDPDNPAAIQKLLALKQRPVEKGLILIAASYEQLM 63 Query: 72 KHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + L+ L WPGP T V+ ++ + + + RV +K+ Sbjct: 64 PYIDESQLTQEQLDKVHATWPGPFTWVMP--ASDKVSHWVSGQFDSIAVRVTDHPLVQKM 121 Query: 128 IETYGHPLAIPSANRSGQ 145 +G PL SAN +GQ Sbjct: 122 CHAFGKPLTSTSANLTGQ 139 >gi|183219444|ref|YP_001837440.1| hypothetical protein LEPBI_I0017 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189909589|ref|YP_001961144.1| SUA5 family translation factor [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167774265|gb|ABZ92566.1| Translation factor, SUA5 family [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167777866|gb|ABZ96164.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 210 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 56/191 (29%), Positives = 85/191 (44%), Gaps = 7/191 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++ + L G PT+TVY + D+ + TA+ ++Y IKK P PL DISM Sbjct: 15 LKQISDRLKDGAIYIFPTDTVYAIIADANSKTAVEKIYSIKKLPKDKPLSLLCRDISMAS 74 Query: 72 KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 P S + K PGP T VL ++ K R+P + ++L++ Sbjct: 75 HFIEYLPNSAYRFMKRMTPGPFTFVLKANKNLPKPSIAHHKDKQIGIRIPDHIYLQELLK 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 + PL SA L S + IIDGGI KI L ST++ + + + Sbjct: 135 IHDSPLTSTSA--FSDDEFIIDIDDLESIYGNLVDGIIDGGIVKIEL-STMIQIH-DDSL 190 Query: 190 RILRPG-GLEI 199 ++R G G E+ Sbjct: 191 ELIRAGKGYEL 201 >gi|237714415|ref|ZP_04544896.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262408246|ref|ZP_06084793.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294643621|ref|ZP_06721424.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides ovatus SD CC 2a] gi|294806130|ref|ZP_06764982.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides xylanisolvens SD CC 1b] gi|229445579|gb|EEO51370.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262353798|gb|EEZ02891.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292641055|gb|EFF59270.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides ovatus SD CC 2a] gi|294446644|gb|EFG15259.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides xylanisolvens SD CC 1b] Length = 187 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 15/150 (10%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 ++KAC+ ++ G I PT+TV+G+ D+ N A+RR+YEIKKR ++ +V Sbjct: 5 IKKACQVMNEGGVILYPTDTVWGIGCDATNEEAVRRVYEIKKRADSKAMLV------LVD 58 Query: 72 KHASVDPLSLHLAKLFW------PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124 VD + + W PLT++ ++ P A + RV F+ Sbjct: 59 SPVKVDFYVQDVPDVAWDLIEVADKPLTIIYS--GARNLAPNLLAEDGSVGIRVTNEDFS 116 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHI 154 ++L + + + SAN SGQ N I Sbjct: 117 RRLCQQFRKAIVSTSANVSGQPGAANFSEI 146 >gi|317479725|ref|ZP_07938847.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 4_1_36] gi|316904095|gb|EFV25927.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 4_1_36] Length = 197 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 70/150 (46%), Gaps = 15/150 (10%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 ++KAC+ + G I PT+T++G+ D+ N A+RR+YEIK+R ++ +V Sbjct: 15 IKKACQVMSEGGVILYPTDTIWGIGCDATNEEAVRRVYEIKQRSDSKAMLV------LVD 68 Query: 72 KHASVDPLSLHLAKLFW------PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124 VD + ++ W PLT++ ++ P A + RV F+ Sbjct: 69 SPVKVDFYVQDVPEVAWDLIELADKPLTIIYS--GARNLAPNLLAEDGSVGIRVTSEAFS 126 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHI 154 K+L + + + SAN SGQ S N I Sbjct: 127 KRLCQQFRKAIVSTSANVSGQPSPGNFSEI 156 >gi|88705951|ref|ZP_01103659.1| Sua5/YciO/YrdC/YwlC family protein [Congregibacter litoralis KT71] gi|88699665|gb|EAQ96776.1| Sua5/YciO/YrdC/YwlC family protein [Congregibacter litoralis KT71] Length = 208 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 55/190 (28%), Positives = 86/190 (45%), Gaps = 14/190 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +R+A + + G I PT++ Y L + A+ R+ I+K + D+S + Sbjct: 17 VRQAADIVRGGGVIVYPTDSAYALGCHIGDKGALDRIRRIRKLDDRHNFTLVCRDLSEIA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKKLIE 129 +A VD L K PGP T + L +TT++ L A KT RVP T+ L+ Sbjct: 77 TYARVDNSVYRLLKQHTPGPYTFI--LRATTEVPRRLMQAKRKTVGLRVPENAITQALLG 134 Query: 130 TYGHPLAIPSANRSGQ----ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 G PL S G I ++ +L E+ L+IDGG G+E+T V Sbjct: 135 DLGEPLMSVSLIMPGDELPLIDPYEIRELLE----HEVDLVIDGGYC--GMEATTVVDLA 188 Query: 186 EKKVRILRPG 195 +++ +LR G Sbjct: 189 DEEPMVLRAG 198 >gi|329960182|ref|ZP_08298624.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides fluxus YIT 12057] gi|328532855|gb|EGF59632.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides fluxus YIT 12057] Length = 187 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 15/150 (10%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 ++KAC+ + G I PT+T++G+ D+ N A+RR+YEIK+R ++ +V Sbjct: 5 IKKACQVMREGGVILYPTDTIWGIGCDATNEEAVRRVYEIKQRSDSKAMLV------LVD 58 Query: 72 KHASVDPLSLHLAKLFW------PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124 A VD + ++ W PLT++ ++ P A + RV F+ Sbjct: 59 STAKVDFYVEDVPEIAWDLIDVTDKPLTIIYS--GARNLAPNLLAEDGSVGIRVTDEEFS 116 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHI 154 K+L + + + SAN SGQ S N I Sbjct: 117 KRLCQQFRKAIVSTSANISGQPSPGNFSEI 146 >gi|304314044|ref|YP_003849191.1| Sua5-related protein [Methanothermobacter marburgensis str. Marburg] gi|302587503|gb|ADL57878.1| Sua5-related protein [Methanothermobacter marburgensis str. Marburg] Length = 207 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 52/196 (26%), Positives = 91/196 (46%), Gaps = 9/196 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + +A ++ G + PT+T+YGL V++ + ++R+L+ IK R P+ VS +S Sbjct: 14 KVIDEAISVMERGGAVIYPTDTIYGLGVNALDGESVRKLFRIKGRAPDKPVSICVSGVSE 73 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCGFTKKLI 128 + + + ++ + + PGP T+ LL D+ P + T RVP + I Sbjct: 74 IPRFSKPSEHAMEVIRRILPGPYTV---LLEKKDLVPDILTGGSSKVGVRVPDDEVCRRI 130 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 P+ SAN SG+ N I+ E+ L++D G ST+V++ E Sbjct: 131 SAR-FPVTATSANISGKQPSANPHDIMGD---LEVDLMLDAGECDSTEPSTVVDLTVEPP 186 Query: 189 VRILRPGGLEIETLKR 204 +LR G + E + R Sbjct: 187 A-VLRMGRGDPEVIHR 201 >gi|260906198|ref|ZP_05914520.1| hypothetical protein BlinB_12795 [Brevibacterium linens BL2] Length = 216 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 54/184 (29%), Positives = 92/184 (50%), Gaps = 7/184 (3%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRP-AMNPLICHVSDISMVKKHASVDPLSLHL 83 + IPT+TVYG+A D+ + +A+ L K R M P + ++ VD L L Sbjct: 30 LVIPTDTVYGIAADAFSASAVSALLAAKGRGRDMPPPVLVPRAETVFGLVDGVDEKLLAL 89 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142 FWPGPLT++ + + D T T R+P + L+ G PLA+ SAN Sbjct: 90 TARFWPGPLTIIANAQPSLDWDLGDTHG--TVAVRMPDDEYALALLGRTG-PLAVSSANV 146 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202 SG + T+ + + ++ + +DGG+ + G+ STIV++ + +I+R G + + L Sbjct: 147 SGSPAATSADEAM-EMLGDDVDIYVDGGVRESGISSTIVDLTGDVP-KIVREGPVTSDEL 204 Query: 203 KRAI 206 + + Sbjct: 205 REIV 208 >gi|332298150|ref|YP_004440072.1| SUA5/yciO/yrdC domain protein [Treponema brennaborense DSM 12168] gi|332181253|gb|AEE16941.1| SUA5/yciO/yrdC domain protein [Treponema brennaborense DSM 12168] Length = 193 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 60/199 (30%), Positives = 92/199 (46%), Gaps = 23/199 (11%) Query: 12 LRKACEFLDA-------GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 L+K E DA G + IPT+TVYG + P A + IK R P I + Sbjct: 4 LKKEAESADAVVRALRGGHVVIIPTDTVYGFS--GIVPVADAEIRAIKGRSETKPFIRLI 61 Query: 65 SDISMVKKHASVD-PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 S V + P SL+ WPG LTL++ L ++ P +TA FR P Sbjct: 62 SSPEAVFAYTDDSIPDSLYA---LWPGALTLIVTLNASCASFP-----GETAAFRCPGDE 113 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG--GISKIGLESTI 180 + +++I G P+ S NRSGQ + +V + + +E+ LI+D + + L ST+ Sbjct: 114 WLRQVIAGCGAPVYSTSVNRSGQPLLRSVAE-MDAEFGREVALIVDAQDSLPQDALPSTL 172 Query: 181 VNVQCEKKVRILRPGGLEI 199 VN+ +LR G + + Sbjct: 173 VNIS-GGTYTVLRQGSVAV 190 >gi|295676914|ref|YP_003605438.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. CCGE1002] gi|295436757|gb|ADG15927.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. CCGE1002] Length = 211 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 54/195 (27%), Positives = 92/195 (47%), Gaps = 11/195 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A + ++ G +A+PT++ Y LA + A+ RL I+ L V D+S + Sbjct: 17 VKQAAQIINDGGVVALPTDSTYALACRLDDKDAVERLRRIRGLDEKQLLSLLVRDLSELA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129 A VD L K PGP VL +T ++ +S + KT RVP T ++E Sbjct: 77 NFAMVDNWQYRLLKSVTPGPYVFVLQ--ATKEVPRRVSHPSRKTIGLRVPDHAITLAILE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL + G+ N + + + K++ L+IDGG + + ST++++ + V Sbjct: 135 ELGQPLLGTTLIMPGETEPLNDPEEIRARLEKQLDLVIDGG-ACVCEPSTVIDLTGSEPV 193 Query: 190 RI------LRPGGLE 198 + L P GLE Sbjct: 194 LVRAGRGQLEPFGLE 208 >gi|148241524|ref|YP_001226681.1| translation factor [Synechococcus sp. RCC307] gi|147849834|emb|CAK27328.1| Possible translation factor [Synechococcus sp. RCC307] Length = 195 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 58/183 (31%), Positives = 87/183 (47%), Gaps = 16/183 (8%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L G P PT+T+ LA P+A + ++++K+RPA PLI + + + +P Sbjct: 13 LQQGEPALFPTDTLPALAAI---PSAAQAIWQLKQRPADKPLILMGASVEQLLPCLGQEP 69 Query: 79 LS--LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC---FRVP-CGFTKKLIETYG 132 + LA+L WPG LTLVL + N + C RVP C +L+ G Sbjct: 70 PAGWQRLAELGWPGALTLVLPACGPV----VEALNPEGGCSLGLRVPACEAALQLLRCSG 125 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192 PLA SANRSG+ + L+ + I L + + G ST+V+ Q + R+L Sbjct: 126 -PLATSSANRSGEPACRTAAE-LAHCFPEVIRLAPEPWLPGSGQASTVVSWQSDGW-RVL 182 Query: 193 RPG 195 R G Sbjct: 183 RQG 185 >gi|288922984|ref|ZP_06417141.1| Sua5/YciO/YrdC/YwlC family protein [Frankia sp. EUN1f] gi|288345660|gb|EFC80032.1| Sua5/YciO/YrdC/YwlC family protein [Frankia sp. EUN1f] Length = 217 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 86/183 (46%), Gaps = 5/183 (2%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLSLHL 83 + +PT+T+YG+ D+ +P A+ L K R P+ V + V L Sbjct: 30 VVLPTDTLYGIGADAFDPVAVGCLLGAKGRGRDMPVPVLVGSWRTLDGLVEQVTDQVRDL 89 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRS 143 + FWPG LTLV++ + L A T R+P + T P+A+ SAN S Sbjct: 90 VRAFWPGGLTLVVNHAPSLSWD-LGDAR-GTVAVRMPLHPVAIELLTRTGPMAVSSANIS 147 Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203 G+ T + L + + + + +DGG + +G STI++ V ++R G ++IE L+ Sbjct: 148 GRPPATTAQDAL-AQLGGAVDVYLDGGRTPVGKASTILDCTGTVPV-VVREGAVDIEALR 205 Query: 204 RAI 206 + Sbjct: 206 SVV 208 >gi|160890843|ref|ZP_02071846.1| hypothetical protein BACUNI_03288 [Bacteroides uniformis ATCC 8492] gi|270295850|ref|ZP_06202050.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. D20] gi|156859842|gb|EDO53273.1| hypothetical protein BACUNI_03288 [Bacteroides uniformis ATCC 8492] gi|270273254|gb|EFA19116.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. D20] Length = 187 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 70/150 (46%), Gaps = 15/150 (10%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 ++KAC+ + G I PT+T++G+ D+ N A+RR+YEIK+R ++ +V Sbjct: 5 IKKACQVMSEGGVILYPTDTIWGIGCDATNEEAVRRVYEIKQRSDSKAMLV------LVD 58 Query: 72 KHASVDPLSLHLAKLFW------PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124 VD + ++ W PLT++ ++ P A + RV F+ Sbjct: 59 SPVKVDFYVQDVPEVAWDLIELADKPLTIIYS--GARNLAPNLLAEDGSVGIRVTSEAFS 116 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHI 154 K+L + + + SAN SGQ S N I Sbjct: 117 KRLCQQFRKAIVSTSANVSGQPSPGNFSEI 146 >gi|257069073|ref|YP_003155328.1| Sua5/YciO/YrdC/YwlC family protein [Brachybacterium faecium DSM 4810] gi|256559891|gb|ACU85738.1| Sua5/YciO/YrdC/YwlC family protein [Brachybacterium faecium DSM 4810] Length = 347 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 52/184 (28%), Positives = 90/184 (48%), Gaps = 15/184 (8%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-L 83 I +PT+TVYG+ D+ P A++ L E K R P + D +++ A+ P + L Sbjct: 29 IVLPTDTVYGIGADAFTPEAVQALLEAKGRGRDTPPPVLIGDHAVLLALATDVPDYIEDL 88 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANL----KTACFRVPCGFTK-KLIETYGHPLAIP 138 + WPG LT++L P T +L + R+P +L+ G PLA+ Sbjct: 89 TEELWPGALTVIL------TAQPSLTWDLGETRGSVALRMPEDEVALELLRRTG-PLAVS 141 Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLE 198 SANR G+ + +V ++ + + + +DGG +++G STI++ I+R G + Sbjct: 142 SANRHGRPAAQSVLDA-ATQLGDSVEIYLDGGPARLGESSTILDATVTPP-EIVREGAIT 199 Query: 199 IETL 202 E + Sbjct: 200 KEQI 203 >gi|229816322|ref|ZP_04446629.1| hypothetical protein COLINT_03372 [Collinsella intestinalis DSM 13280] gi|229808078|gb|EEP43873.1| hypothetical protein COLINT_03372 [Collinsella intestinalis DSM 13280] Length = 214 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 57/204 (27%), Positives = 96/204 (47%), Gaps = 16/204 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAV---------DSRNP-TAIRRLYEIKKRPAMNPLI 61 L A + L AG +PTETVYG+ V ++ P T R++ +K+R + Sbjct: 11 LGPAADCLTAGGLALVPTETVYGVGVAISAFAANLETPGPDTGYGRIFTLKQRELTQTVP 70 Query: 62 CHVSDISMVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 V + ++++ P S+ LA+ WPG LTLV+ + D+ A T R Sbjct: 71 WLVDGPAALERYGKDVPHSICALAEKLWPGALTLVVP--AADDVPSFMRAADGTVALRAS 128 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 ++LI G PLA+ SAN G+ + + + I + + +D G + ST Sbjct: 129 ASPVVQELIARCGSPLAVTSANTHGKPAPISFDEV-EPRILAGVDVAVDAGETPCRDAST 187 Query: 180 IVNVQCEKKVRILRPGGLEIETLK 203 IV V+ + +++ILR G L + ++ Sbjct: 188 IVAVR-DGELQILREGALAVREIR 210 >gi|167621974|ref|YP_001672268.1| SUA5/yciO/yrdC domain-containing protein [Shewanella halifaxensis HAW-EB4] gi|212288222|sp|B0TLD6|RIMN_SHEHH RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|167351996|gb|ABZ74609.1| SUA5/yciO/yrdC domain [Shewanella halifaxensis HAW-EB4] Length = 187 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 77/185 (41%), Gaps = 19/185 (10%) Query: 16 CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75 E ++ G IA PTE VYGL D N AI RL EIK RP LI D + + Sbjct: 10 AELVEQGGVIAYPTEAVYGLGCDPDNDDAIERLLEIKLRPWQKGLILVAGDYQQLLPYID 69 Query: 76 VDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETY 131 LS L WPGP T ++ + + L + + + RV K L Sbjct: 70 ESQLSAEQLAFVHSKWPGPFTFIMPV--KPGLSNLLSGSFDSIAVRVTAHEGVKALCAAI 127 Query: 132 GHPLAIPSANRSGQ---ISITNVKHILSSSICKEIPLIIDGGISKIGLE---STIVNVQC 185 P+ SAN +GQ +S VK I + I +G++ STI++ + Sbjct: 128 NKPIVSTSANLTGQDPALSGAAVKQQFEGIIAGLV-------IGDLGIQASPSTIIDAKS 180 Query: 186 EKKVR 190 + +R Sbjct: 181 GQVIR 185 >gi|312796685|ref|YP_004029607.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia rhizoxinica HKI 454] gi|312168460|emb|CBW75463.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia rhizoxinica HKI 454] Length = 209 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 53/194 (27%), Positives = 88/194 (45%), Gaps = 11/194 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A + +D G +A+PT++ Y LA + A+ +L I+ L V D+S + Sbjct: 17 IKQAAQIIDGGGVVALPTDSSYALACHLDDKAAVEQLRRIRGLNERRHLSLMVRDLSELA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKKLIE 129 A VD L K PGP +L +T ++ LS + KT RVP T L+E Sbjct: 77 TFAMVDNRQYRLIKAVTPGPYVFILQ--ATKEVPRRLSHPSRKTIGLRVPDHAITLALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G P+ + G N + + + K++ L+IDGG ST++++ + V Sbjct: 135 ALGQPVIASTLILPGDDEPLNEPEAIRAQLEKQLDLVIDGGACA-AEPSTVIDLSGDAPV 193 Query: 190 RI------LRPGGL 197 + L P GL Sbjct: 194 LVRVGRGPLEPFGL 207 >gi|149278400|ref|ZP_01884537.1| translation factor [Pedobacter sp. BAL39] gi|149230770|gb|EDM36152.1| translation factor [Pedobacter sp. BAL39] Length = 250 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 77/166 (46%), Gaps = 10/166 (6%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYE---IKKRPAMNPLICHVSDI 67 A+ +A E L G I PT+TVYGL D N AI R+ IK A +C SD+ Sbjct: 58 AIEQAVEVLKKGGIIIYPTDTVYGLGCDITNQKAIERICRIRGIKPEKANFSFVC--SDL 115 Query: 68 SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + + +D + + K PGP T +L+ + ++ L ++N KT RVP + Sbjct: 116 RHISDYIKPIDTTTFRVLKKALPGPFTFILN--ANNNVPKLLSSNKKTVGIRVPDNDIAR 173 Query: 126 KLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGG 170 +++ G+P+ S + I + ++ + L+IDGG Sbjct: 174 EIVRLLGNPILSTSIKDDDEVIEYSTDPELIHEKYEDRVDLVIDGG 219 >gi|332881939|ref|ZP_08449581.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680174|gb|EGJ53129.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 185 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/138 (31%), Positives = 76/138 (55%), Gaps = 11/138 (7%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 ++ E L AG I PT+TV+G+ D+ N +A+ R++ IK+R LI VS I+M++ Sbjct: 5 QQITEILKAGGVILYPTDTVWGIGCDATNASAVARIFTIKQRSESKSLIILVSSITMLRD 64 Query: 73 HASVDPLSL--HLAKLFWPGPLTLVLD---LLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 + + P ++ +L K+ P T++ + LL+T I +T ++ V F +++ Sbjct: 65 YIADLPQNILNYLQKV--TEPTTIIYENPQLLATNVIAADNTVAIRL----VQDPFCQQM 118 Query: 128 IETYGHPLAIPSANRSGQ 145 I +G P+ SAN SGQ Sbjct: 119 IAHFGKPIVSTSANISGQ 136 >gi|188996882|ref|YP_001931133.1| Sua5/YciO/YrdC/YwlC family protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188931949|gb|ACD66579.1| Sua5/YciO/YrdC/YwlC family protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 195 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 54/203 (26%), Positives = 92/203 (45%), Gaps = 15/203 (7%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 M+I S L A + + G + T+T+YG+ ++ + A+ ++Y IK+R P I Sbjct: 1 MNINISTKLDDAIDVIKHGGIVITKTDTIYGILANALDKEAVEKVYLIKEREKDKPFIIL 60 Query: 64 VSDISMVKK-HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-- 120 + + +KK +P K+ +T++ D+ + KT FR+P Sbjct: 61 IPNTKFLKKIKVKENP---QAEKILNLKGITVIFDVNDPNNELEYLHRGTKTLAFRIPDD 117 Query: 121 ---CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 F KL P+ PSAN SG ++ + ++ L ID G S+ + Sbjct: 118 PEFLSFLNKL----DTPIVAPSANPSGLKPAEDINKAI-EYFKDKVDLYIDRGKSETNIP 172 Query: 178 STIVNVQCEKKVRILRPGGLEIE 200 STIV V+ K++ILR G +I+ Sbjct: 173 STIVKVENS-KIKILRQGSKQID 194 >gi|170590097|ref|XP_001899809.1| yrdC domain containing protein [Brugia malayi] gi|158592728|gb|EDP31325.1| yrdC domain containing protein [Brugia malayi] Length = 232 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 60/203 (29%), Positives = 99/203 (48%), Gaps = 27/203 (13%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 T S A+ + + ++G +A+PT+TVYG+A N +LY++K+R + PL VS+ Sbjct: 18 TYSAAICRCLQIFESGGIVALPTDTVYGVATALPNSD---KLYKLKRRSRLKPLGLFVSN 74 Query: 67 ISMVKK--HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GF 123 + V++ H ++D L + PGP+TL+ + +T + + T R+P F Sbjct: 75 VREVQRWCHQTIDNNQL---RTLLPGPVTLIFE--RSTSLPSIFNPEHGTVGIRIPDHDF 129 Query: 124 TKKLIETYGH-PLAIPSAN----RSGQISITNVKHILSSSICKEIPLIIDGGI-----SK 173 + L+ PLA SAN +S + I + K + E+ LIID GI Sbjct: 130 VRSLMTRLDDVPLAQTSANISNDQSSPVCIEDFKDLW-----PELDLIIDDGIVFQRDGN 184 Query: 174 IGLE-STIVNVQCEKKVRILRPG 195 + E ST+VN+ I+R G Sbjct: 185 VNREGSTVVNLSIPGTYSIIRDG 207 >gi|332880171|ref|ZP_08447853.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332681930|gb|EGJ54845.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 189 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 3/135 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +R+A E + G I PT+T++G+ D+ N A+RR+Y+IKKR LIC V ++ Sbjct: 7 IRQAVEVMRRGGVILYPTDTIWGIGCDATNEEAVRRVYDIKKRDDSKALICLVDSDHRLQ 66 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIET 130 ++ S P + PLT++ D ++ P A + RV F+++L Sbjct: 67 RYVSDVPNVAWDLIEYATRPLTIIFD--KAKNLAPNLLAEDGSVGIRVTREEFSRQLCYR 124 Query: 131 YGHPLAIPSANRSGQ 145 + + SAN SG+ Sbjct: 125 FQKAVVSTSANVSGE 139 >gi|71898888|ref|ZP_00681055.1| SUA5/yciO/yrdC, N-terminal [Xylella fastidiosa Ann-1] gi|71731300|gb|EAO33364.1| SUA5/yciO/yrdC, N-terminal [Xylella fastidiosa Ann-1] Length = 209 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 85/190 (44%), Gaps = 5/190 (2%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 S+ + L +A L G IA PTE V+GL D R TA+ L IK+R + LI Sbjct: 22 SMATTLTLSEAVTALQQGGVIAYPTEAVWGLGCDPRQETAVHTLLNIKQRASGKGLILVT 81 Query: 65 SDISMVKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 ++++ ++ ++D LS LH + WPGP T VL ST H ++ + A Sbjct: 82 AELNTLQDWLNLDTLSPERLHEVQASWPGPHTWVLP-ASTRAPHWITGHHNGLAVRISAH 140 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 L + L SAN +GQ S + L S+ + I+DG + + I Sbjct: 141 PLVSALCRAWNMALISTSANVAGQ-SPARRREDLDPSLLPHLAGIVDGPTGGLAQPTPIR 199 Query: 182 NVQCEKKVRI 191 + + +R+ Sbjct: 200 DARSGHILRL 209 >gi|295086554|emb|CBK68077.1| translation factor SUA5 [Bacteroides xylanisolvens XB1A] Length = 202 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 15/150 (10%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 ++KAC+ ++ G I PT+TV+G+ D+ N A+RR+YEIKKR ++ +V Sbjct: 20 IKKACQVMNEGGVILYPTDTVWGIGCDATNEEAVRRVYEIKKRADSKAMLV------LVD 73 Query: 72 KHASVDPLSLHLAKLFW------PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124 VD + + W PLT++ ++ P A + RV F+ Sbjct: 74 SPVKVDFYVQDVPDVAWDLIEVADKPLTIIYS--GARNLAPNLLAEDGSVGIRVTNEDFS 131 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHI 154 ++L + + + SAN SGQ N I Sbjct: 132 RRLCQQFRKAIVSTSANVSGQPGAANFSEI 161 >gi|266619533|ref|ZP_06112468.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium hathewayi DSM 13479] gi|288868944|gb|EFD01243.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium hathewayi DSM 13479] Length = 216 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 60/199 (30%), Positives = 89/199 (44%), Gaps = 29/199 (14%) Query: 147 SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAI 206 S T H+ K I +I+DGG IG+ESTI++V + V ILRPG + E + Sbjct: 3 SPTTADHVWQDMNGK-IDMIVDGGPVGIGVESTIIDVSGQVPV-ILRPGAVTQEMAGAVL 60 Query: 207 SVEL--------EYCVDETSTPQSPGMLKSHYAPRSQVRL---------RAIHVNPREAL 249 +E+ + + P++PGM HYAP++ + L R I+ +E L Sbjct: 61 GMEIGLDPAITGDGPMKADVKPKAPGMKYKHYAPKADLTLVEGEPAEVARTINHLAKEKL 120 Query: 250 ---IRFGNVPIKNI-----ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSS 301 R G + E + SL L + + A NL+ ++ DD A I S Sbjct: 121 QAGYRVGIICTDETRELYPEGMVRSLGLRA--REETIAHNLYAVLREFDDLEADYIYSES 178 Query: 302 IPNHGLGIAINNRLERAAA 320 LG AI NRL++AA Sbjct: 179 FSADHLGQAIMNRLKKAAG 197 >gi|256823825|ref|YP_003147788.1| SUA5/yciO/yrdC domain-containing protein [Kangiella koreensis DSM 16069] gi|256797364|gb|ACV28020.1| SUA5/yciO/yrdC domain protein [Kangiella koreensis DSM 16069] Length = 187 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 51/195 (26%), Positives = 85/195 (43%), Gaps = 17/195 (8%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 M+ + + A + + G IA PTE VYGL + AI+R+ +IK+RP LI Sbjct: 1 MAYINPFKMHYAAQRIQQGGVIAYPTEAVYGLGCHPKAEQAIQRILKIKRRPWQKGLILV 60 Query: 64 VSDISMVKKHASVDPLSL-------HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 S++ +K + S D +L H + W P+ ++ PL + Sbjct: 61 ASNVEQIKPYLSDDGKALISCFNEQHKRPVTWLLPV--------HAEVSPLLRGTHEKIA 112 Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R+ F K L + L SANR+GQ +T + + + E+ +II G Sbjct: 113 VRLSTNPFVKALCDAANSALVSTSANRAGQPEMTKAEQV-RCQMGSELDMIIVGPTGGHT 171 Query: 176 LESTIVNVQCEKKVR 190 S+I++ Q + +R Sbjct: 172 RPSSIIDAQTREVLR 186 >gi|88607846|ref|YP_505359.1| Sua5/YciO/YrdC/YwlC family protein [Anaplasma phagocytophilum HZ] gi|88598909|gb|ABD44379.1| Sua5/YciO/YrdC/YwlC family protein [Anaplasma phagocytophilum HZ] Length = 200 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 50/184 (27%), Positives = 86/184 (46%), Gaps = 27/184 (14%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 + PTET+Y LA ++ + A+ +LY+IK+R P + DI VKK +++ L + Sbjct: 15 VCFPTETLYALACNAFSERAVAKLYDIKRRLYDKPFSLMLGDIQQVKKFSNMKNTDLRIM 74 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLSTA-NLKTACFRVPCG-------FTKKLIETYGHPLA 136 ++ PGP+T +L PL A NL F+ G ++ + P+ Sbjct: 75 EMLSPGPITFIL---------PLHYAQNLPRRFFKDTLGVRIPDHALACNILSRFEFPVV 125 Query: 137 IPSANRSGQ---ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 SAN SG+ + +++ L + K + + S G+ ST+ ++ +K ILR Sbjct: 126 ATSANLSGERDALKASDIPEELRMHVSK----LWEDDSSVSGMCSTVFDMVSQK---ILR 178 Query: 194 PGGL 197 G L Sbjct: 179 TGML 182 >gi|300789603|ref|YP_003769894.1| SUA5/YciO/YrdC/YwlC family protein [Amycolatopsis mediterranei U32] gi|299799117|gb|ADJ49492.1| SUA5/YciO/YrdC/YwlC family protein [Amycolatopsis mediterranei U32] Length = 216 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 53/189 (28%), Positives = 89/189 (47%), Gaps = 7/189 (3%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLSLHL 83 + +PT+TVYG+ D+ + A++ L K R P+ V S V V P + L Sbjct: 30 VVLPTDTVYGIGADAFDAGAVQALLRAKNRGPDMPVGVLVGSWSTVDGLVLGVPPQARAL 89 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142 + FWPG L++VL + + L A T R+P +L+ G P+A+ SAN Sbjct: 90 IEAFWPGDLSIVLPHAPSLQWN-LGDAR-GTVMLRMPLHPVALELLRDVG-PMAVSSANV 146 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202 SG+ + + + + + +DGG S + S+IV++ + V +LR G + E + Sbjct: 147 SGRPPASTAQEA-QEQLGDSVAVYLDGGSSGEAVASSIVDLTGTEPV-VLREGAVGKEAI 204 Query: 203 KRAISVELE 211 + V E Sbjct: 205 AEVLGVPAE 213 >gi|297192051|ref|ZP_06909449.1| translation factor SUA5 [Streptomyces pristinaespiralis ATCC 25486] gi|197719499|gb|EDY63407.1| translation factor SUA5 [Streptomyces pristinaespiralis ATCC 25486] Length = 215 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 59/208 (28%), Positives = 94/208 (45%), Gaps = 23/208 (11%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + LR+A + G + +PT+TVYG+ D+ +P A+ L E K R P + + Sbjct: 14 TTGLREAASAVRRGELVVLPTDTVYGIGADAFSPEAVADLLEAKGRGRNMPTPVLIGSPN 73 Query: 69 MVKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANL----KTACFRVPC 121 + H V S L +WPG LTLV T P NL T R+P Sbjct: 74 TL--HGLVTDFSEQAWELVDAYWPGALTLV------TKHQPSLQWNLGDTRGTVAIRMPL 125 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITN---VKHILSSSICKEIPLIIDGGISKIGLES 178 + T P+A+ SAN +G S + + +L S+ + +DGG + + S Sbjct: 126 HPVAIELLTEVGPMAVSSANLTGHPSPEDCDAAQGMLGDSVS----VYLDGGPTPGIVPS 181 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAI 206 +IV+V + V +LR G L + L++ + Sbjct: 182 SIVDVTGKVPV-LLREGALSADELRKVV 208 >gi|313617107|gb|EFR89657.1| Sua5/YciO/YrdC/YwlC family protein [Listeria innocua FSL S4-378] Length = 151 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 50/150 (33%), Positives = 76/150 (50%), Gaps = 14/150 (9%) Query: 191 ILRPGGLEIETLKRAI-SVELEY-CVDETSTPQSPGMLKSHYAPRSQVRL-------RAI 241 ILRPGG+ IE +++ I +V+L ET P++PGM +HYAP++ V L Sbjct: 2 ILRPGGITIEQIEQVIGTVDLSTNSTTETEKPKAPGMKYTHYAPKAPVYLVEGSSQFWQS 61 Query: 242 HVNPRE-ALIRFGNVPIKNIENAI-ISLNLSKTGKLK---EAAFNLFNYMKIADDSGASS 296 +N E A + G + K + + + S + TG +K E A +L+ ++ D + Sbjct: 62 EINKVEIAGKKLGILATKELTSKLATSAVIQSTGSIKAMGEIATSLYKGLRAFDHADVDI 121 Query: 297 IAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326 I P LG AI NRLE+AA R S+ Sbjct: 122 IFAEVYPETELGAAIMNRLEKAAGNRRISE 151 >gi|146300267|ref|YP_001194858.1| Sua5/YciO/YrdC/YwlC family protein [Flavobacterium johnsoniae UW101] gi|146154685|gb|ABQ05539.1| translation factor SUA5 [Flavobacterium johnsoniae UW101] Length = 189 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 51/181 (28%), Positives = 88/181 (48%), Gaps = 5/181 (2%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK-H 73 A E + G I PT+TV+G+ D+ NP A+ ++Y++K+R +I ++ M+ Sbjct: 11 AYEVIKEGGIILYPTDTVWGIGCDATNPEAVAKIYKLKQRAETQSMIVLMNGEKMMYNVF 70 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGH 133 ++ ++ + L P TL+LD H + +A+ V F KL+E Sbjct: 71 KNIPEVAWQILDLS-EKPTTLILDDARNV-AHNVISADKSLGVRLVKEPFCYKLMERMKK 128 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI-GLESTIVNVQCEKKVRIL 192 PL SAN SGQ + + K I S I + ++ K+ G STI+ + + +V+I+ Sbjct: 129 PLVSTSANISGQPTPMSFKEI-SPEIINGVDYVVKLNQDKVAGKPSTIIKLTNDSQVKII 187 Query: 193 R 193 R Sbjct: 188 R 188 >gi|124007775|ref|ZP_01692477.1| Sua5/YciO/YrdC/YwlC family protein [Microscilla marina ATCC 23134] gi|123986721|gb|EAY26502.1| Sua5/YciO/YrdC/YwlC family protein [Microscilla marina ATCC 23134] Length = 209 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 57/199 (28%), Positives = 99/199 (49%), Gaps = 22/199 (11%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP-------LICHV 64 + + E L +G I PT+TVYGL D N A+ ++ +IKK +NP IC+ Sbjct: 18 ISQVVECLRSGGVIIYPTDTVYGLGCDIHNQKAVEKICQIKK---INPKKRKNLSFICN- 73 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 D+S + ++A + + L K PGP T +L+ +++ + + + K R+P Sbjct: 74 -DLSHIAEYARIGNATFKLMKKALPGPYTFILE--TSSRVPKILNISKKNVGIRIPDNNI 130 Query: 125 KKLI-ETYGHPLAIPSANRSGQI--SITNVKHILSSSICKEIPLIIDGGI-SKIGLESTI 180 +LI + G+P+ S ++ +T+ + I K + L+IDGG S +G STI Sbjct: 131 ARLIVKELGNPIITSSVLAEDEVVKYLTDPEDIYEQYKHK-VDLVIDGGNGSNVG--STI 187 Query: 181 VNVQCEKKVRILRPGGLEI 199 ++ + V +LR G +I Sbjct: 188 IDCS-DDNVTVLRQGAGDI 205 >gi|332876662|ref|ZP_08444421.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332685367|gb|EGJ58205.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 202 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 56/197 (28%), Positives = 91/197 (46%), Gaps = 20/197 (10%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP------LICHVS 65 + KA + L G I PT+TVY + D+ N A+ R+ +K +NP +IC+ Sbjct: 15 MAKALKMLRDGELIIYPTDTVYAIGCDALNVRAVERICALK---GVNPQKSNLSIICY-- 69 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFT 124 D+S + ++A V + L K PGP T + L T+ P N K RVP Sbjct: 70 DLSNISEYAQVSNAAFKLLKKNLPGPFTFI---LPTSSRLPKIYKNKKEVGIRVPDNSIA 126 Query: 125 KKLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVN 182 + L++ G+P+ S + + I + ++ + L+IDGG G E ST+VN Sbjct: 127 RGLVDGLGNPILTMSVHDEDEIIEYSTDPELIHEKYEGRVALVIDGGYG--GSEASTVVN 184 Query: 183 VQCEKKVRILRPGGLEI 199 + ++R G E+ Sbjct: 185 C-VDDAFEVVRQGKGEL 200 >gi|227495020|ref|ZP_03925336.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces coleocanis DSM 15436] gi|226831472|gb|EEH63855.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces coleocanis DSM 15436] Length = 209 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 58/204 (28%), Positives = 93/204 (45%), Gaps = 11/204 (5%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP---LICHV 64 D A E + A PI +PT+TVYG+ + + A+ + K R P LI Sbjct: 11 DDAAKNAVKEAIAADSPIVLPTDTVYGIGGNPASTQAVNNVLAAKGRDRQMPPPVLISSP 70 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANL-KTACFRVPCGF 123 +++ +V K+ + + L + FWPG LTL+L+ T D+ ++ T R+P Sbjct: 71 TEVDLVAKNIPQN--ARILMEKFWPGALTLILE---TGDLVNYDLGDMPDTIAVRMPNHP 125 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 I PLA+ SAN +G T+ + ++ L D G + + STIV Sbjct: 126 VALEILKATGPLAVTSANLTGAEPATDCAQA-TEYFGDKVALYFDAGATPGPVPSTIVKF 184 Query: 184 QCEKKVRILRPGGLEIETLKRAIS 207 E + ILR G + L++AI+ Sbjct: 185 NGE-NLEILRAGLISETALQQAIA 207 >gi|256380139|ref|YP_003103799.1| Sua5/YciO/YrdC/YwlC family protein [Actinosynnema mirum DSM 43827] gi|255924442|gb|ACU39953.1| Sua5/YciO/YrdC/YwlC family protein [Actinosynnema mirum DSM 43827] Length = 216 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 54/194 (27%), Positives = 91/194 (46%), Gaps = 17/194 (8%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLSLHL 83 + +PT+TVYG+ D+ + A+R L K R P+ V + + SV + L Sbjct: 30 VVLPTDTVYGIGCDAFDAAAVRSLLAAKGRGPDMPVPVLVGSWTTIDGLVLSVPRQARSL 89 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTA-----NLKTACFRVPCG-FTKKLIETYGHPLAI 137 + FWPG L+LVL H S A T R+P +L+ G P+A+ Sbjct: 90 IEAFWPGGLSLVLH-------HAPSLAWDLGQTRGTVMLRMPLHPVALELLRDVG-PMAV 141 Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197 SAN+SG ++ + +++ + +DGG S + STIV++ + +LR G + Sbjct: 142 SSANKSGFPPASSAAQA-REQLGEDVQVYLDGGPSGENVASTIVDLTGTDPL-VLREGAV 199 Query: 198 EIETLKRAISVELE 211 + + + VE+E Sbjct: 200 PVADIASVLGVEVE 213 >gi|55379248|ref|YP_137098.1| DNA-binding protein [Haloarcula marismortui ATCC 43049] gi|55231973|gb|AAV47392.1| DNA binding protein [Haloarcula marismortui ATCC 43049] Length = 210 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 80/163 (49%), Gaps = 8/163 (4%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 + PTETVYGL D+ + A+ R+++ K R P+ V DI +++ + L Sbjct: 33 VVYPTETVYGLGADALDAAAVERVFDAKGRERDKPVSLAVPDIESAREYTRLSDRELAFM 92 Query: 85 KLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANR 142 + F PGP+T+V++ D+ P + A RVP +L+ G PL SAN Sbjct: 93 REFLPGPVTVVVE---RRDVVPDVLVAGQDRVGVRVPDHDLALELLAETG-PLTATSANI 148 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 SG S+ V + +I + +++D G + G ST+VNV Sbjct: 149 SGNPSVRTVDDL--DAIRERAAVVLDAGETDGGTGSTVVNVDS 189 >gi|218710991|ref|YP_002418612.1| Sua5/YciO/YrdC family protein [Vibrio splendidus LGP32] gi|218324010|emb|CAV20372.1| Sua5/YciO/YrdC family protein [Vibrio splendidus LGP32] Length = 189 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 45/190 (23%), Positives = 85/190 (44%), Gaps = 10/190 (5%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + + + L G IA PTE V+G+ D NP AI++L ++K+RP LI + Sbjct: 6 DNFQHTLQALQQGEVIAYPTEGVFGVGCDPDNPQAIKKLLDLKQRPIEKGLILIAASYEQ 65 Query: 70 VKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + + L+ L K WPGP+T ++ +++ + + + RV + Sbjct: 66 LLPYIDESQLTEAQLATVKATWPGPVTWIMP--TSSKVTDWVSGQFDSIAVRVTDHPLVQ 123 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 ++ +G PL SAN +G+ + + + + + I++G + G ++ Sbjct: 124 RMCNEFGKPLTSTSANLTGEPPCMTTEEV-QQQLGQHLVAILEG---QTGGREKPSEIRD 179 Query: 186 EKKVRILRPG 195 K +ILR G Sbjct: 180 AKTSKILRQG 189 >gi|149178883|ref|ZP_01857462.1| probable low molecular weight protein-tyrosine-phosphatase ywlE [Planctomyces maris DSM 8797] gi|148842295|gb|EDL56679.1| probable low molecular weight protein-tyrosine-phosphatase ywlE [Planctomyces maris DSM 8797] Length = 369 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 62/239 (25%), Positives = 108/239 (45%), Gaps = 27/239 (11%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + + A ++L G +A PT T Y +A S +P A+ +L + PL+ V Sbjct: 15 DVIHLAVQYLAKGELVAFPTATAYVIAGQSLSPAAMTKLRALTG--GDQPLVLCVKGFDE 72 Query: 70 VKKH-ASVDPLSLHLAKLFWPGPLTLVLD------LLST------TDIHPLSTANLKTAC 116 + + + PL+ LAK WPGP+ L L+ L S ++I P S L+ Sbjct: 73 AQDYLPEMPPLARKLAKRCWPGPVVLELERPQPGSLFSQLPPEVQSEICPGSQLRLRAPA 132 Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 + + + PL + + + Q + + L +E+ L+ID G S+ G Sbjct: 133 HEI----IFQAMRLSPSPLVLLNEDSKYQTADS-----LIDDFGEEVALVIDDGPSRFGD 183 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCVDETS-TPQSPGMLKSHYAPR 233 +STIV + + + +IL+PG + TLKR S + + C T +P + G+ + A + Sbjct: 184 QSTIVGI-VDNQWKILQPGVVTETTLKRLSSEIYMFVCTGNTCRSPMAEGLFRKLLADK 241 >gi|237785866|ref|YP_002906571.1| hypothetical protein ckrop_1283 [Corynebacterium kroppenstedtii DSM 44385] gi|237758778|gb|ACR18028.1| conserved hypothetical protein [Corynebacterium kroppenstedtii DSM 44385] Length = 218 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 61/214 (28%), Positives = 94/214 (43%), Gaps = 17/214 (7%) Query: 3 IMSITDSNALRKACEF----LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58 I TD + R+ E + G + IPT+TVYG+ D+ + A+ L K R Sbjct: 4 IYDCTDQDERRRGLEAAQSAVKGGRLVVIPTDTVYGIGCDAFDNDAVAALLRAKHRGPDM 63 Query: 59 PLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 P+ V V +V P L + FWPG L+ V+ + L N + Sbjct: 64 PVPVLVGSWDTVDGLVQTVTPRMRELVQAFWPGGLSFVVTQAPSLPWD-LGDTN-GSVML 121 Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITN---VKHILSSSICKEIPLIIDGGISK 173 R+P +L+ G P+A+ SAN SGQ T+ K +L S E+ + +D G + Sbjct: 122 RMPLQPVAIELLRATG-PMAVSSANISGQPPATSAIAAKQMLGS----EVSVYLDDGEAT 176 Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS 207 IG STI+++ +LR G + E + I Sbjct: 177 IGEPSTIIDLTSPTP-HLLREGAISAERISEVIG 209 >gi|158312866|ref|YP_001505374.1| Sua5/YciO/YrdC/YwlC family protein [Frankia sp. EAN1pec] gi|158108271|gb|ABW10468.1| Sua5/YciO/YrdC/YwlC family protein [Frankia sp. EAN1pec] Length = 216 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 59/213 (27%), Positives = 98/213 (46%), Gaps = 19/213 (8%) Query: 1 MQIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56 MQ+ +D L A + + G + +PT+T+YG+ D+ N A+ L K R Sbjct: 1 MQVFDCSDEGQRKAGLDAATDAVGRGKLVVLPTDTLYGIGADAFNRDAVTALLAAKGRGR 60 Query: 57 MNPLICHVSDISMVKKHASVDPLSLH---LAKLFWPGPLTLVLDLLSTTDIHPLSTANLK 113 P+ V + A + ++ H L + FWPG LTLV++ + L A Sbjct: 61 NMPVPVLVGSWRTLDGLA--EQVTGHIRDLVRAFWPGGLTLVVNHAPSLRWD-LGDAR-G 116 Query: 114 TACFRVPCGFTKKLIETYGH--PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171 T R+P IE G P+A+ SAN SG+ T+ + + + + +DGG Sbjct: 117 TVAVRMP--LHPVAIELLGRTGPMAVSSANISGRPPATSAVDAV-AQLGGAAAVYLDGGT 173 Query: 172 SKIGLESTIVNVQCEKKV-RILRPGGLEIETLK 203 + +G STIV+ C V ++R G +++ L+ Sbjct: 174 TPVGTASTIVD--CTGPVPTVVREGAVDLAALR 204 >gi|330995801|ref|ZP_08319698.1| Sua5/YciO/YrdC/YwlC family protein [Paraprevotella xylaniphila YIT 11841] gi|329574531|gb|EGG56096.1| Sua5/YciO/YrdC/YwlC family protein [Paraprevotella xylaniphila YIT 11841] Length = 189 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 3/135 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +R+A E + G I PT+T++G+ D+ N A+RR+Y+IKKR LIC V ++ Sbjct: 7 IRQAVEVMRRGGVILYPTDTIWGIGCDATNEEAVRRVYDIKKRDDSKALICLVDSDHRLQ 66 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIET 130 ++ S P + PLT++ D ++ P A + RV F+++L Sbjct: 67 RYVSDVPNVAWDLIEYATRPLTIIFD--KAKNLAPNLLAEDGSVGIRVTREEFSRELCYR 124 Query: 131 YGHPLAIPSANRSGQ 145 + + SAN SG+ Sbjct: 125 FQKAVVSTSANVSGE 139 >gi|34496005|ref|NP_900220.1| Sua5/YciO/YrdC family protein [Chromobacterium violaceum ATCC 12472] gi|81656937|sp|Q7P0L7|RIMN_CHRVO RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|34101858|gb|AAQ58226.1| probable Sua5/YciO/YrdC family protein [Chromobacterium violaceum ATCC 12472] Length = 193 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 55/179 (30%), Positives = 81/179 (45%), Gaps = 13/179 (7%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 + D G+ IA TE+ YGL + AIRR+ IK RP LI +D ++ V Sbjct: 23 QLRDGGV-IAYSTESCYGLGCRPLDARAIRRVLAIKARPNHKGLIVIAADFEQIRH--LV 79 Query: 77 DPLS----LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETY 131 PLS LA+ +WPGP T +L ++ + P RV G L Sbjct: 80 KPLSAAQRAELAR-YWPGPYTFLLP--ASRRVPPALRGRHHKIAVRVTAHGEAAALCRRL 136 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G L SANR+GQ S+ + + K+ L + G I K STI++++ + +R Sbjct: 137 GTALVSTSANRAGQQSLKTARACRMA--FKDKVLTLPGRIGKRRKPSTIIDLESGRVLR 193 >gi|330444529|ref|YP_004377515.1| SUA5 protein [Chlamydophila pecorum E58] gi|328807639|gb|AEB41812.1| SUA5 protein [Chlamydophila pecorum E58] Length = 290 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 55/168 (32%), Positives = 82/168 (48%), Gaps = 13/168 (7%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK--HASV 76 + G +AIPT+TV+GL +P A +LY++KKR L +V+ + ++K H + Sbjct: 17 IQLGKVVAIPTDTVFGLVCSQHSPQAKTQLYQMKKRSKSKTLAVYVNTLEEIEKMIHRPL 76 Query: 77 DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLIETYGHPL 135 L +AK F PGPL+L+L + +P + + T FR V ++LI G PL Sbjct: 77 SSQELRVAKTFLPGPLSLILH-----NKNPEFSES--TLTFRIVNHPVVQELISVCG-PL 128 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 SAN S +L K L I G +GLEST+ +V Sbjct: 129 VGTSANISDFPPAVYAHEVLEDF--KTEDLCIFDGDCFLGLESTVASV 174 >gi|78212027|ref|YP_380806.1| hypothetical protein Syncc9605_0477 [Synechococcus sp. CC9605] gi|78196486|gb|ABB34251.1| conserved hypothetical protein [Synechococcus sp. CC9605] Length = 199 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 52/134 (38%), Positives = 69/134 (51%), Gaps = 16/134 (11%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI---CHVSDI---SMVKK 72 L AG IPT+T+ GLAV P + L+ +K+RPA PLI V+D+ V Sbjct: 15 LRAGEAAIIPTDTLPGLAV---CPDQAQTLWRLKRRPADKPLILMGASVNDLLHEVAVPC 71 Query: 73 HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETY 131 H V+ LA+ +WPG LTLVL L+ C R+P C T+ L++ Sbjct: 72 HREVE----ALAERYWPGALTLVLPARDGGAGRYLNPGGTTLGC-RIPACEQTRALLQIS 126 Query: 132 GHPLAIPSANRSGQ 145 G PLA SANRSG+ Sbjct: 127 G-PLATTSANRSGE 139 >gi|306817931|ref|ZP_07451669.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus mulieris ATCC 35239] gi|304649274|gb|EFM46561.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus mulieris ATCC 35239] Length = 222 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 56/174 (32%), Positives = 83/174 (47%), Gaps = 23/174 (13%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI----SMVKKHASVD-PL 79 + IPT+TVYG+A P A++RL K R P VS + S++++ A P Sbjct: 31 LVIPTDTVYGIASVPFEPAAVQRLQGAKGRSEDFPPPVLVSGVAALDSLLERPAIFGAPA 90 Query: 80 SLH-----LAKLFWPGPLTLVLDLLSTTDIHPLSTANL----KTACFRVPC-GFTKKLIE 129 L+ LA FWPGPLT++ +P NL T R P +++E Sbjct: 91 PLYEAARRLATAFWPGPLTII------ARANPRLGWNLGKTGGTIALRQPDHPVALQILE 144 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 G PLA+ SANR G T++ ++ ++ + +D G S G STIVN+ Sbjct: 145 ATG-PLAVTSANRHGAPPATDISAA-TAYFWDKVAVYVDAGESPSGQPSTIVNL 196 >gi|296119523|ref|ZP_06838081.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium ammoniagenes DSM 20306] gi|295967406|gb|EFG80673.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium ammoniagenes DSM 20306] Length = 235 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 56/191 (29%), Positives = 90/191 (47%), Gaps = 11/191 (5%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKR-PAMN-PLICHVSDISMVKKHASVDPLSLH 82 I PT+TVYGL D+ + A+ L K R P M P++ D + + D + L Sbjct: 31 IVTPTDTVYGLGCDAFDNDAVASLLAAKHRGPDMPVPVLIGSWDTAKGLVQSFTDQMKL- 89 Query: 83 LAKLFWPGPLTLVLDLLSTTDIHPLSTANLK-TACFRVPCG-FTKKLIETYGHPLAIPSA 140 L + FWPG L++V+ + P + + + T R+P +L+ G P+A+ SA Sbjct: 90 LTEAFWPGGLSIVVPQAPSL---PWNLGDTRGTVMLRMPLHPIAIELLREVG-PMAVSSA 145 Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200 N SG T + K + + +DGG + IG STI+++ +LR G L E Sbjct: 146 NISGHAPATTAIAA-KQQLGKAVAVYLDGGEAPIGEPSTIIDLSGPWPY-LLREGALSAE 203 Query: 201 TLKRAISVELE 211 + I V+ + Sbjct: 204 RISEVIGVDAQ 214 >gi|307701295|ref|ZP_07638316.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus mulieris FB024-16] gi|307613456|gb|EFN92704.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus mulieris FB024-16] Length = 222 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 56/174 (32%), Positives = 83/174 (47%), Gaps = 23/174 (13%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI----SMVKKHASVD-PL 79 + IPT+TVYG+A P A++RL K R P VS + S++++ A P Sbjct: 31 LVIPTDTVYGIASVPFEPAAVQRLQGAKGRGEDFPPPVLVSGVAALDSLLERPAIFGAPA 90 Query: 80 SLH-----LAKLFWPGPLTLVLDLLSTTDIHPLSTANL----KTACFRVPC-GFTKKLIE 129 L+ LA FWPGPLT++ +P NL T R P +++E Sbjct: 91 PLYEAARRLATAFWPGPLTII------ARANPRLGWNLGKTGGTIALRQPNHPVALQILE 144 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 G PLA+ SANR G T++ ++ ++ + +D G S G STIVN+ Sbjct: 145 ATG-PLAVTSANRHGAPPATDISAA-TAYFWDKVAVYVDAGESPSGQPSTIVNL 196 >gi|281419747|ref|ZP_06250746.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella copri DSM 18205] gi|281406276|gb|EFB36956.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella copri DSM 18205] Length = 190 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 73/152 (48%), Gaps = 5/152 (3%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 +T ++ A E + G I PT+TV+G+ D+ NP A++++YEIKKR LIC + Sbjct: 1 MTVEEDIKHAVECMRKGGVILYPTDTVWGIGCDATNPEAVKKVYEIKKRDDSKALICLID 60 Query: 66 DIS-MVKKHASVDPLSLHLAKLFWP-GPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 M + +V ++ P P T++LD + + A + R+ Sbjct: 61 SADRMARYFRNVPQVAWDFIDAAMPVKPTTVILD--DASGVANNLVAEDGSLAMRITYEP 118 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHI 154 F+K+L + P+ SAN SG+ + N + I Sbjct: 119 FSKQLCYRFQKPIVSTSANVSGEPAAQNYRDI 150 >gi|149190428|ref|ZP_01868699.1| Sua5/YciO/YrdC family protein [Vibrio shilonii AK1] gi|148835682|gb|EDL52648.1| Sua5/YciO/YrdC family protein [Vibrio shilonii AK1] Length = 185 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/183 (26%), Positives = 85/183 (46%), Gaps = 14/183 (7%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L +G IA PTE V+G+ D + +AI +L +K+RP LI ++ ++ + VD Sbjct: 11 LKSGEVIAYPTEGVFGVGCDPDDVSAIEKLLAVKQRPVEKGLILIAANYEQLRPY--VDE 68 Query: 79 LSLHLAKL-----FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYG 132 L +L WPGP T ++ ++ + + T RV ++L +YG Sbjct: 69 TKLTATQLESVQNTWPGPYTWIMP--ASDRVSSWLSGAFDTIAVRVTDHELVQQLCLSYG 126 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192 P+ SAN SG S + + S + + I+DG + G + ++ + +++L Sbjct: 127 KPITSTSANLSGMPSCMTTEEV-KSQLGDRLAEILDG---ETGGRNKPSEIRDARTLKVL 182 Query: 193 RPG 195 R G Sbjct: 183 RQG 185 >gi|289643110|ref|ZP_06475240.1| Sua5/YciO/YrdC/YwlC family protein [Frankia symbiont of Datisca glomerata] gi|289507074|gb|EFD28043.1| Sua5/YciO/YrdC/YwlC family protein [Frankia symbiont of Datisca glomerata] Length = 218 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 58/208 (27%), Positives = 92/208 (44%), Gaps = 15/208 (7%) Query: 7 TDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 TDS L A + G + +PT+T+YG+ D+ + A+R L K R P+ Sbjct: 8 TDSEVRVAGLEAATRAVRHGGLVVLPTDTLYGIGADAFDQVAVRALLTAKGRGPEMPVPV 67 Query: 63 HVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 + + V L + FWPG LTL++ + L A T R+P Sbjct: 68 LIGSWRTLDGLVERVTEQVRDLVRAFWPGGLTLIVRHAPSLSWD-LGDAR-GTVAVRMP- 124 Query: 122 GFTKKLIETYGH--PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 IE G P+A+ SAN SG+ T + + + + +DGG +G+ ST Sbjct: 125 -LHPVAIELLGRTGPMAVSSANISGRPPATTADDAF-AQLGDSVEVYLDGGPCALGVAST 182 Query: 180 IVNVQCEKKV-RILRPGGLEIETLKRAI 206 IV+ C V R+LR G +++ L+ + Sbjct: 183 IVD--CTDDVPRVLRVGAVDLAALRAVV 208 >gi|323526589|ref|YP_004228742.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. CCGE1001] gi|323383591|gb|ADX55682.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. CCGE1001] Length = 211 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 55/195 (28%), Positives = 93/195 (47%), Gaps = 11/195 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A + ++ G +A+PT++ Y LA + A+ RL I+ L V D+S + Sbjct: 17 VKQAVQIINDGGVVALPTDSSYALACHLDDKNAVERLRRIRGLDEKQLLSLLVRDLSELA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129 A VD L K PGP VL +T ++ LS + KT RVP T ++ Sbjct: 77 NFAMVDNRQYRLIKSVTPGPYVFVLQ--ATKEVPRRLSHPSRKTIGLRVPDHAITLAILG 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL S G+ + N + + + K++ L+IDGG + + ST++++ ++ V Sbjct: 135 ELGQPLLGSSLILPGETAPLNDPEDIRARLEKQLDLVIDGG-ACVCEPSTVIDLTGDEPV 193 Query: 190 RI------LRPGGLE 198 + L P GLE Sbjct: 194 LVRAGRGFLAPFGLE 208 >gi|269977554|ref|ZP_06184521.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus mulieris 28-1] gi|269934157|gb|EEZ90724.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus mulieris 28-1] Length = 224 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 56/174 (32%), Positives = 83/174 (47%), Gaps = 23/174 (13%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI----SMVKKHASVD-PL 79 + IPT+TVYG+A P A++RL K R P VS + S++++ A P Sbjct: 31 LVIPTDTVYGIASVPFEPAAVQRLQGAKGRGEDFPPPVLVSGVAALDSLLERPAIFGAPA 90 Query: 80 SLH-----LAKLFWPGPLTLVLDLLSTTDIHPLSTANL----KTACFRVPC-GFTKKLIE 129 L+ LA FWPGPLT++ +P NL T R P +++E Sbjct: 91 PLYEAARRLATAFWPGPLTII------ARANPRLGWNLGKTGGTIALRQPNHPVALQILE 144 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 G PLA+ SANR G T++ ++ ++ + +D G S G STIVN+ Sbjct: 145 ATG-PLAVTSANRHGAPPATDISAA-TAYFWDKVAVYVDAGESPSGQPSTIVNL 196 >gi|257064847|ref|YP_003144519.1| Sua5/YciO/YrdC/YwlC family protein [Slackia heliotrinireducens DSM 20476] gi|256792500|gb|ACV23170.1| Sua5/YciO/YrdC/YwlC family protein [Slackia heliotrinireducens DSM 20476] Length = 202 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 54/195 (27%), Positives = 90/195 (46%), Gaps = 12/195 (6%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVD---SRNPTAIRRLYEIKKRPAMNPLICHV 64 ++++ A L+ G PI PT+TVYG+ + ++ P AI Y+IK+R A + V Sbjct: 6 ETSSFDDALAALNVGRPIIFPTDTVYGIGLAVGLAQTPQAI---YDIKERDAGKAIPWLV 62 Query: 65 SD-ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 S++ V + +A++FWPGPLTL++ ST + T R+P Sbjct: 63 GQHSSLLLYGQDVPEFAQTMARVFWPGPLTLIVRAAST--VPKAFCGPDGTIALRMPDDD 120 Query: 124 TK-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 T +LI G PLA SAN G I ++ + + + + G+ ST+ + Sbjct: 121 TALELIRRCGFPLATSSANLQGHKPPRRFSEI-DPAVLSRVSAALGDNVPRSGVSSTVAD 179 Query: 183 VQCEKKVRILRPGGL 197 + I+R G + Sbjct: 180 CTGDHP-EIIRVGAI 193 >gi|254515967|ref|ZP_05128027.1| SUA5/YciO/yrdC, N-terminal domain [gamma proteobacterium NOR5-3] gi|219675689|gb|EED32055.1| SUA5/YciO/yrdC, N-terminal domain [gamma proteobacterium NOR5-3] Length = 187 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 53/184 (28%), Positives = 87/184 (47%), Gaps = 13/184 (7%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 R L G IA PTE V+GL+ D + +A++RL ++K+RPA LI D S ++ Sbjct: 10 RLCANVLAGGGVIACPTEAVWGLSCDPFSGSAVQRLLDLKQRPAHKGLILVAGDESQLEF 69 Query: 73 -HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF--TKKLIE 129 A + P ++ WPGP T ++ + L ++ RV G ++L Sbjct: 70 LLADLAPALRQKLRVSWPGPNTWLVP--HHGRVPALVHGKFESVAVRV-SGHPGVRELCR 126 Query: 130 TYGHPLAIPSANRSGQ---ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 YG PL SAN +GQ ++ V++ + + +P G ++ G STI +V + Sbjct: 127 VYGGPLVSSSANVAGQPAPKTLLAVRNYFGTRLDGLLP----GQVAAAGRPSTIRDVFTD 182 Query: 187 KKVR 190 + R Sbjct: 183 EVFR 186 >gi|329957244|ref|ZP_08297764.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides clarus YIT 12056] gi|328522957|gb|EGF50060.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides clarus YIT 12056] Length = 187 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 70/150 (46%), Gaps = 15/150 (10%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 ++KAC+ + G I PT+TV+G+ D+ N A+RR+YEIK+R ++ +V Sbjct: 5 IKKACQVMREGGVILYPTDTVWGIGCDATNEDAVRRVYEIKQRQDSKAMLV------LVD 58 Query: 72 KHASVDPLSLHLAKLFW------PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124 VD + ++ W PLT++ + L A +A RV F+ Sbjct: 59 SSVKVDFYVRDVPEVAWDLIDLADKPLTIIYSGARNLAANLL--AEDGSAGIRVTNEEFS 116 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHI 154 K+L + + + SAN SGQ S N I Sbjct: 117 KRLCQQFRKAIVSTSANISGQPSPKNFSEI 146 >gi|145222897|ref|YP_001133575.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium gilvum PYR-GCK] gi|145215383|gb|ABP44787.1| translation factor SUA5 [Mycobacterium gilvum PYR-GCK] Length = 221 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 55/205 (26%), Positives = 91/205 (44%), Gaps = 7/205 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + A L G + +PT+TVYG+ D+ + A+ L + K R P+ V Sbjct: 15 ATGIASAISALKEGRLVVMPTDTVYGIGADAFDGEAVAALLDAKGRGRDMPVPVLVGSWH 74 Query: 69 MVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + P S L + FWPG L+LV+ + L AN T R+P + Sbjct: 75 TISGLVYTVPNSAKELIRAFWPGALSLVVHQAPSLQWD-LGDAN-GTVMLRMPLHPVAIE 132 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+ G P+A+ SAN SG + + + + +DGG ++ STIV++ Sbjct: 133 LLREVG-PMAVSSANISGSPAAVTAAQA-REQLGDRVEVYLDGGPAEQQAASTIVDLTGA 190 Query: 187 KKVRILRPGGLEIETLKRAISVELE 211 R+LR G + +E + + VE + Sbjct: 191 HP-RVLRQGPVTLEAIADVLGVEAQ 214 >gi|156972719|ref|YP_001443626.1| translation factor [Vibrio harveyi ATCC BAA-1116] gi|212288234|sp|A7N129|RIMN_VIBHB RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|156524313|gb|ABU69399.1| hypothetical protein VIBHAR_00384 [Vibrio harveyi ATCC BAA-1116] Length = 185 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 6/131 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L G IA PTE V+G+ D NP AI++L E+K+RP LI + + + Sbjct: 11 LQTGEVIAYPTEGVFGVGCDPDNPEAIQKLLELKQRPVEKGLILIAASYEQLLPYIDESQ 70 Query: 79 LS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134 L+ L WPGP T ++ ++ + + + RV +K+ +G P Sbjct: 71 LTQEQLDQVHATWPGPYTWIMP--ASDKVSHWVSGQFDSIAVRVTDHPLVQKMCNAFGKP 128 Query: 135 LAIPSANRSGQ 145 L SAN +GQ Sbjct: 129 LTSTSANLTGQ 139 >gi|209693706|ref|YP_002261634.1| hypothetical protein VSAL_I0082 [Aliivibrio salmonicida LFI1238] gi|208007657|emb|CAQ77767.1| conserved hypothetical protein [Aliivibrio salmonicida LFI1238] Length = 185 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 66/137 (48%), Gaps = 6/137 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L + + L+ G IA PTE V+G+ D N A+ +L ++K+RP LI + I + Sbjct: 4 LDQVVKALNNGGVIAYPTEGVFGVGCDPDNEFALHQLLKVKQRPREKGLILIAASIDQLL 63 Query: 72 KH---ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + A ++ ++ K WPGP+T ++ + T PL T + RV K + Sbjct: 64 PYIDLAQLNNDQINRIKFTWPGPVTWIVPVNKNT--LPLVTGQFDSIAVRVSAHPQVKAI 121 Query: 128 IETYGHPLAIPSANRSG 144 +G P+ SAN SG Sbjct: 122 CSAFGKPITSTSANLSG 138 >gi|260062207|ref|YP_003195287.1| Sua5/YciO/YrdC/YwlC family protein [Robiginitalea biformata HTCC2501] gi|88783769|gb|EAR14940.1| Sua5/YciO/YrdC/YwlC family protein [Robiginitalea biformata HTCC2501] Length = 190 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 49/200 (24%), Positives = 95/200 (47%), Gaps = 21/200 (10%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 M N L + L++G I PT+TV+G+ D+ NP A+ R+Y +K+RP LIC Sbjct: 1 MKTAMKNILDNCLQVLESGGLILYPTDTVWGIGCDATNPEAVARVYTLKQRPDSKALIC- 59 Query: 64 VSDISMVKKHASVDPLSLHLAKLFW------PGPLTLVLDLLSTTDIHPLSTANLKTACF 117 +V ++ L + + W P+T+V D + + P A + Sbjct: 60 -----LVGSGRQLEQLIPEVPDVAWDIMDLSEKPVTIVYD--NPQGVAPNLVAADNSLAV 112 Query: 118 RVPC-GFTKKLIETYGHPLAIPSANRSGQ---ISITNVKHILSSSICKEIPLIIDGGISK 173 R+ F ++L+ + PL SAN +GQ S + + + + + +PL + ++ Sbjct: 113 RIASDNFCRELLRRFRKPLVSTSANLAGQPTPDSFSGIAPDILNGVDYVVPLQQE---TE 169 Query: 174 IGLESTIVNVQCEKKVRILR 193 + S+I+ ++ + +V+++R Sbjct: 170 LRTPSSIIRLKADGQVQVIR 189 >gi|315443362|ref|YP_004076241.1| translation factor SUA5 [Mycobacterium sp. Spyr1] gi|315261665|gb|ADT98406.1| translation factor SUA5 [Mycobacterium sp. Spyr1] Length = 221 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 55/205 (26%), Positives = 91/205 (44%), Gaps = 7/205 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + A L G + +PT+TVYG+ D+ + A+ L + K R P+ V Sbjct: 15 ATGIASAISALKEGRLVVMPTDTVYGIGADAFDGEAVAALLDAKGRGRDMPVPVLVGSWH 74 Query: 69 MVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 ++ P S L + FWPG L+LV+ + L AN T R+P + Sbjct: 75 TIQGLVYTVPNSAKELIRAFWPGALSLVVHQAPSLQWD-LGDAN-GTVMLRMPLHPVAIE 132 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+ G P+A+ SAN SG + + + +DGG ++ STIV++ Sbjct: 133 LLREVG-PMAVSSANISGSPPAVTAAQA-REQLGDRVEVYLDGGPAEQQAASTIVDLTGA 190 Query: 187 KKVRILRPGGLEIETLKRAISVELE 211 R+LR G + +E + + VE + Sbjct: 191 HP-RVLRQGPVTLEAIADVLGVEAQ 214 >gi|32491246|ref|NP_871500.1| hypothetical protein WGLp497 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|81741613|sp|Q8D257|RIMN_WIGBR RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|25166453|dbj|BAC24643.1| yrdC [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 194 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 53/165 (32%), Positives = 79/165 (47%), Gaps = 14/165 (8%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL-HL 83 +A PTE+++GL D + +A+ +L +KKR I ++IS + + LS +L Sbjct: 27 VAYPTESMFGLGCDPDSISAVNKLIYLKKRKINKGFIIVAANISQLNNYIDCTSLSKNNL 86 Query: 84 AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSA 140 K+F WPG +T ++ DI N RV F KK+ +G P+ SA Sbjct: 87 NKIFCTWPGFITWLMP--PKKDIPCWLIGNNSLIAVRVSNFFPIKKICNIFGKPIISTSA 144 Query: 141 NRSGQI---SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 N SG+I +I +KH L S I +I+D I K S I N Sbjct: 145 NLSGEIPAKNIKEIKHKLGSKI-----IILDHPIGKYSNPSEIRN 184 >gi|86142259|ref|ZP_01060769.1| Sua5/YciO/YrdC/YwlC family protein [Leeuwenhoekiella blandensis MED217] gi|85831011|gb|EAQ49468.1| Sua5/YciO/YrdC/YwlC family protein [Leeuwenhoekiella blandensis MED217] Length = 195 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 55/191 (28%), Positives = 89/191 (46%), Gaps = 15/191 (7%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 N + ++ + G + PT+TV+G+ D+ N AI ++Y +KKR LIC VSD+ M Sbjct: 12 NEVNESLGVIKRGGLLLYPTDTVWGIGCDATNADAIDKVYALKKRKESKALICLVSDMKM 71 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA-NL----KTACFR-VPCGF 123 + + P + + P T++ D P+ A NL T R V F Sbjct: 72 LNQFIEEIPEVAYNILKYADQPTTIIYD-------KPIRVAENLVGEDNTLGIRIVQDEF 124 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID-GGISKIGLESTIVN 182 + LI+ G PL SAN SG+ + I S I + + I++ K STI+ Sbjct: 125 CRSLIKKMGRPLVSTSANISGEKTPMRFPEI-SKPILEGVDYIVNLQRKHKSTKSSTIIR 183 Query: 183 VQCEKKVRILR 193 + + +V++LR Sbjct: 184 LSNDGQVKVLR 194 >gi|24212721|ref|NP_710202.1| putative translation factor Sua5 [Leptospira interrogans serovar Lai str. 56601] gi|45655934|ref|YP_000020.1| hypothetical protein LIC10020 [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24193354|gb|AAN47220.1| putative translation factor Sua5 [Leptospira interrogans serovar Lai str. 56601] gi|45599167|gb|AAS68657.1| conserved hypothetical protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 202 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 59/199 (29%), Positives = 98/199 (49%), Gaps = 23/199 (11%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP--LIC-HVSDIS 68 L++ + L G PT+TVY L DS++ + +LYE+K P LIC +S S Sbjct: 15 LQQISDQLSQGKIYIFPTDTVYALLADSQSKLGVEKLYELKNISKNQPLSLICPSISIAS 74 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIH----PLSTANLKTACFRVPCG-F 123 +H S D + L K PGP T + ++ + H S K R+P + Sbjct: 75 NYIEHLSND--AFRLMKKITPGPFTFI----TSANKHLPRVSFSNQKEKQIGIRIPDAIY 128 Query: 124 TKKLIETYGHPLAIPS--ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 ++L++ + +PL S AN I + +++ I S + I+DGGI K+ L STI+ Sbjct: 129 LQELMKIHPNPLTSTSVFANDEFIIEVDSLEKIYGSRVEG----IVDGGILKVEL-STIL 183 Query: 182 NVQCEKKVRILRPG-GLEI 199 ++ + ++ I+R G G E+ Sbjct: 184 DLTGD-EITIIREGKGFEL 201 >gi|293393274|ref|ZP_06637588.1| ribosome maturation factor RimN [Serratia odorifera DSM 4582] gi|291424184|gb|EFE97399.1| ribosome maturation factor RimN [Serratia odorifera DSM 4582] Length = 185 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 64/135 (47%), Gaps = 6/135 (4%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83 IA PTE V+GL D + A+R L +K+RP LI ++ + + + LS Sbjct: 18 IAYPTEAVFGLGCDPDSEQALRELLALKQRPWEKGLILIAAEYDQLLPYIADSQLSESQR 77 Query: 84 AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140 A +F WPGP+T V+ TT L T + + RV ++L +G PL SA Sbjct: 78 AAIFASWPGPVTWVIPAKPTTST--LLTGHFNSLAVRVSDHPLVQQLCREFGKPLVSTSA 135 Query: 141 NRSGQISITNVKHIL 155 N SGQ + +L Sbjct: 136 NLSGQEPCRSANEVL 150 >gi|269962637|ref|ZP_06176982.1| Sua5/YciO/YrdC family protein [Vibrio harveyi 1DA3] gi|269832560|gb|EEZ86674.1| Sua5/YciO/YrdC family protein [Vibrio harveyi 1DA3] Length = 186 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 6/139 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + + E L G IA PTE V+G+ D NP AI++L E+K+RP LI + Sbjct: 3 DNFEQVLEALQKGEVIAYPTEGVFGVGCDPDNPEAIQKLLELKQRPVEKGLILIAASYEQ 62 Query: 70 VKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + + L+ L WPGP T ++ ++ + + + RV + Sbjct: 63 LLPYVDESQLTQEQLDKVHATWPGPYTWIMP--ASDKVSHWVSGQFDSIAVRVTDHPLVQ 120 Query: 126 KLIETYGHPLAIPSANRSG 144 K+ +G PL SAN +G Sbjct: 121 KMCNAFGKPLTSTSANLTG 139 >gi|182682384|ref|YP_001830544.1| SUA5/yciO/yrdC domain-containing protein [Xylella fastidiosa M23] gi|182632494|gb|ACB93270.1| SUA5/yciO/yrdC domain [Xylella fastidiosa M23] Length = 209 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 53/190 (27%), Positives = 84/190 (44%), Gaps = 5/190 (2%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 S+ + L +A L G IA PTE V+GL D R TA+ L IK+R + LI Sbjct: 22 SMATTLTLSEAVTALQQGDVIAYPTEAVWGLGCDPRQETAVHTLLNIKQRASGKGLILVT 81 Query: 65 SDISMVKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 ++++ ++ +D LS LH + WPGP T VL ST H ++ + A Sbjct: 82 AELNTLQDWLDLDTLSPERLHEVQASWPGPHTWVLP-ASTRAPHWITGHHNGLAVRISAH 140 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 L + L SAN +GQ + L S+ + I+DG + ++I Sbjct: 141 PLVSALCRAWNMALISTSANVAGQPPARR-REDLDPSLLPHLAGIVDGPTGGLAQPTSIR 199 Query: 182 NVQCEKKVRI 191 + + +R+ Sbjct: 200 DARSGHILRL 209 >gi|119505057|ref|ZP_01627133.1| putative translation factor (SUA5) [marine gamma proteobacterium HTCC2080] gi|119459039|gb|EAW40138.1| putative translation factor (SUA5) [marine gamma proteobacterium HTCC2080] Length = 208 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 56/198 (28%), Positives = 88/198 (44%), Gaps = 16/198 (8%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAV---DSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +R+A E L +G IA PT++ Y L D R IRR+ ++ L+C D+S Sbjct: 17 VRQAVEILRSGGVIAYPTDSAYALGCRLGDKRALECIRRIRKLDDNHNFT-LVC--PDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVP-CGFT 124 ++ +A VD + L K PGP T +L+ +HP KT RVP T Sbjct: 74 VLGAYAKVDNSAYRLIKNATPGPYTFILEATGEVPRRLLHP----RRKTVGVRVPDNAIT 129 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + L+ + P+ + G + + +++ ++ L+IDGG GLE T V Sbjct: 130 QALLAEFAEPIMSVTLQLPGDDYPLTDPYDIRTTLEHDVALVIDGGFC--GLEPTTVIDL 187 Query: 185 CEKKVRILRPGGLEIETL 202 +LR G +I L Sbjct: 188 SADSYEVLREGLGDISRL 205 >gi|194435076|ref|ZP_03067314.1| Sua5/YciO/YrdC/YwlC family protein [Shigella dysenteriae 1012] gi|194416683|gb|EDX32814.1| Sua5/YciO/YrdC/YwlC family protein [Shigella dysenteriae 1012] gi|320182719|gb|EFW57605.1| putative ribosome maturation factor [Shigella boydii ATCC 9905] gi|332085429|gb|EGI90595.1| ribosome maturation factor [Shigella boydii 5216-82] gi|332086276|gb|EGI91432.1| ribosome maturation factor [Shigella dysenteriae 155-74] Length = 190 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 48/142 (33%), Positives = 68/142 (47%), Gaps = 10/142 (7%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +A+ A + L+ IA PTE V+G+ D + TA+ RL E+K+RP LI ++ Sbjct: 7 GDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYE 66 Query: 69 MVKKHASVDPLSLHLAK---LF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 +K + +D L A+ +F WPGP+T V STT T + RV Sbjct: 67 QLKPY--IDDTMLTDAQRETIFSRWPGPVTFVFPAPSTT--PRWLTGRFDSLAVRVTDHP 122 Query: 123 FTKKLIETYGHPLAIPSANRSG 144 L + YG PL SAN SG Sbjct: 123 LVVALCQAYGKPLVSTSANLSG 144 >gi|146313348|ref|YP_001178422.1| putative ribosome maturation factor [Enterobacter sp. 638] gi|145320224|gb|ABP62371.1| translation factor SUA5 [Enterobacter sp. 638] Length = 200 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 58/124 (46%), Gaps = 6/124 (4%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 IA PTE V+G+ D + TA+ RL E+K+RP LI ++ +K + L+ Sbjct: 33 IAYPTEAVFGVGCDPDSETAVTRLLELKQRPVEKGLILIAANFEQLKPYIDDSMLTEQQR 92 Query: 85 KLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140 WPGP+T V L +T T + RV +L ET+G PL SA Sbjct: 93 NTIFSAWPGPVTFVFPALPST--PSWLTGRFDSLAVRVTDHPLVVELCETFGKPLVSTSA 150 Query: 141 NRSG 144 N +G Sbjct: 151 NLTG 154 >gi|330817634|ref|YP_004361339.1| Sua5/YciO/YrdC/YwlC [Burkholderia gladioli BSR3] gi|327370027|gb|AEA61383.1| Sua5/YciO/YrdC/YwlC [Burkholderia gladioli BSR3] Length = 211 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 89/197 (45%), Gaps = 11/197 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +R+A E + G IA+PT++ Y LA + TA+ R+ +I+ L V D+S + Sbjct: 17 VRQAVEIVKQGGVIAMPTDSSYALACHLDDKTAVERVRKIRGLDDKQLLSLLVRDLSELA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129 A VD L K PGP VL +T ++ LS + KT RVP T ++E Sbjct: 77 NFAMVDNHQYRLIKSVTPGPYVFVLQ--ATKEVPRRLSHPSRKTIGLRVPDHAITLAVLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 T G PL + N + + K++ L+IDGG STIV++ + V Sbjct: 135 TLGQPLLGTTLILPPDSDPLNDPEEIRERLEKQVDLVIDGGACPRE-PSTIVDLTGDAPV 193 Query: 190 RI------LRPGGLEIE 200 + L P GL E Sbjct: 194 LVRAGRGSLEPFGLSAE 210 >gi|326800728|ref|YP_004318547.1| Sua5/YciO/YrdC/YwlC family protein [Sphingobacterium sp. 21] gi|326551492|gb|ADZ79877.1| Sua5/YciO/YrdC/YwlC family protein [Sphingobacterium sp. 21] Length = 235 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 53/192 (27%), Positives = 89/192 (46%), Gaps = 14/192 (7%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIR---RLYEIKKRPAMNPLICH-VSD 66 A+ + L G I PT+TVYG+ D N AI R+ IK A IC+ ++D Sbjct: 43 AIEQVVAVLKKGGIIIYPTDTVYGIGCDITNQKAIETLCRIRGIKPEKANLSFICYDLTD 102 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125 I+ K +D + L K PGP T + + ++ + L ++N KT RVP + Sbjct: 103 IAQYTK--PIDTATFRLLKKSLPGPFTYIFN--ASNQVPKLMSSNKKTVGIRVPDNNIAR 158 Query: 126 KLIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 +++ G+P+ S + +I + ++ + L+IDGG G E++ V V Sbjct: 159 EIVRQLGNPIVSASIHDEDEILEYSTDPELIHEKFQNLVDLVIDGGYG--GNEASTV-VD 215 Query: 185 CEK-KVRILRPG 195 C + ++R G Sbjct: 216 CTSGEFDVIRQG 227 >gi|320333780|ref|YP_004170491.1| Sua5/YciO/YrdC/YwlC family protein [Deinococcus maricopensis DSM 21211] gi|319755069|gb|ADV66826.1| Sua5/YciO/YrdC/YwlC family protein [Deinococcus maricopensis DSM 21211] Length = 200 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 58/209 (27%), Positives = 92/209 (44%), Gaps = 17/209 (8%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 MS D AL +A + G I TETV+ LA ++ P A+ RL K RP P Sbjct: 1 MSAEDQVALERARVAVLDGRLIGFATETVWALACAAQ-PDAVARLAAAKGRPEGKPFQVL 59 Query: 64 VSDISMVKKHASVD----PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 +D + +D L LA L WPGPLTLV +S + RV Sbjct: 60 CADPARAASFFRLDERLRARFLTLAPL-WPGPLTLVAPASPLAPAALVSNGRVGV---RV 115 Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P ++ G LA S N SG+++ + + L+ ++ ++ G GL S Sbjct: 116 PDHVHAHAVLNAVGGALAASSLNLSGEVAASTFEQALAYALAD----VLLPGPDAAGLAS 171 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAIS 207 T+V+++ +LR G + + ++ A++ Sbjct: 172 TVVDLETGV---VLREGAVRADAVREALA 197 >gi|153834324|ref|ZP_01986991.1| protein YrdC [Vibrio harveyi HY01] gi|148869332|gb|EDL68346.1| protein YrdC [Vibrio harveyi HY01] Length = 185 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 6/131 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L G IA PTE V+G+ D NP AI++L E+K+RP LI + + + Sbjct: 11 LQTGEVIAYPTEGVFGVGCDPDNPEAIQKLLELKQRPVEKGLILIAASYEQLLPYIDESQ 70 Query: 79 LS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134 L+ L WPGP T ++ ++ + + + RV +K+ +G P Sbjct: 71 LTQEQLDKVHATWPGPYTWIMP--ASDKVSHWVSGQFDSIAVRVTDHPLVQKMCNAFGKP 128 Query: 135 LAIPSANRSGQ 145 L SAN +GQ Sbjct: 129 LTSTSANLTGQ 139 >gi|42526970|ref|NP_972068.1| Sua5/YciO/YrdC/YwlC family protein [Treponema denticola ATCC 35405] gi|41817394|gb|AAS11979.1| Sua5/YciO/YrdC/YwlC family protein [Treponema denticola ATCC 35405] Length = 184 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 59/193 (30%), Positives = 94/193 (48%), Gaps = 18/193 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D +L A L G I +PT+TVYG + P ++ +IKKR A I + Sbjct: 7 DPKSLETAASVLKKGEIIIVPTDTVYGFS--GIMPFTKEKIIKIKKRGAEKSFISLIEKP 64 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + K+ P+ L L WP PL++++ T+ FR P + + Sbjct: 65 QDIYKYTDT-PVPEILLNL-WPAPLSIIVK----------DKEGRGTSAFRCPDDVWLRN 112 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LI G P+ S N SG+ +++++ I+ S ++ LI+DGG K GL STIV++ + Sbjct: 113 LIGKTGFPIYSTSVNYSGEPVLSDIRDII-SEFEDKVSLIVDGGEQK-GLSSTIVSL-TD 169 Query: 187 KKVRILRPGGLEI 199 K+ I+R G L+I Sbjct: 170 KEPCIIRQGALKI 182 >gi|227874645|ref|ZP_03992808.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus mulieris ATCC 35243] gi|227844854|gb|EEJ55000.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus mulieris ATCC 35243] Length = 224 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 56/174 (32%), Positives = 82/174 (47%), Gaps = 23/174 (13%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI----SMVKKHASVD-PL 79 + IPT+TVYG+A P A+ RL K R P VS + S++++ A P Sbjct: 31 LVIPTDTVYGIASVPFEPAAVERLQGAKGRGEDFPPPVLVSGVAALDSLLERPAIFGAPA 90 Query: 80 SLH-----LAKLFWPGPLTLVLDLLSTTDIHPLSTANL----KTACFRVPC-GFTKKLIE 129 L+ LA FWPGPLT++ +P NL T R P +++E Sbjct: 91 PLYEAARRLATAFWPGPLTII------ARANPRLGWNLGKTGGTIALRQPNHPVALQILE 144 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 G PLA+ SANR G T++ ++ ++ + +D G S G STIVN+ Sbjct: 145 ATG-PLAVTSANRHGAPPATDISAA-TAYFWDKVAVYVDAGESPSGQPSTIVNL 196 >gi|15837521|ref|NP_298209.1| hypothetical protein XF0919 [Xylella fastidiosa 9a5c] gi|81547878|sp|Q9PEV9|RIMN_XYLFA RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|9105840|gb|AAF83729.1|AE003931_6 conserved hypothetical protein [Xylella fastidiosa 9a5c] Length = 187 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 81/183 (44%), Gaps = 5/183 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +A L G IA PTE V+GL D R TA+ L IK+R + LI ++++ ++ Sbjct: 7 LSEAVTALQQGGVIAYPTEAVWGLGCDPRQETAVHTLLNIKQRASGKGLILVTAELNTLQ 66 Query: 72 KHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128 +D LS LH + WPGP T VL ST H ++ + A L Sbjct: 67 DWLDLDTLSPERLHEVQTSWPGPHTWVLP-ASTRAPHWITGHHNGLAVRISAHPLVSALC 125 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 + L SAN +GQ + L S+ + I+DG + ++I + + Sbjct: 126 RAWNMALISTSANVAGQPPARR-REDLDPSLLPHLAGIVDGPTGGLAQPTSIRDARSGHI 184 Query: 189 VRI 191 +R+ Sbjct: 185 LRL 187 >gi|210634580|ref|ZP_03298176.1| hypothetical protein COLSTE_02098 [Collinsella stercoris DSM 13279] gi|210158765|gb|EEA89736.1| hypothetical protein COLSTE_02098 [Collinsella stercoris DSM 13279] Length = 220 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 62/208 (29%), Positives = 91/208 (43%), Gaps = 14/208 (6%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAV------DS----RNPTAIRRLYEIKKRPAM 57 D L A + L AG +PTETVYG+ V DS + T R++ +K R Sbjct: 12 DEEQLASAAKRLLAGDLALLPTETVYGVGVAVNAYLDSGGLPGSETGYGRIFTLKHRDTS 71 Query: 58 NPLICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 + V + ++ + P ++ LA WPG LTLV+ + H + A+ A Sbjct: 72 QTVPWLVDGPDALDRYGASVPDAIRTLAAECWPGALTLVVPAAARVP-HFMRAADGTVAL 130 Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 + LI G PLA+ SAN G + + + I + + L +D G + Sbjct: 131 RASASPVIQDLIRATGSPLAVTSANTHGYPAPASFAEV-EPRILEGVDLAVDAGETACRD 189 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKR 204 STIV V+ V ILR G L ET+ R Sbjct: 190 ASTIVAVRDGAPV-ILRQGALPAETIAR 216 >gi|260599602|ref|YP_003212173.1| tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein [Cronobacter turicensis z3032] gi|260218779|emb|CBA34127.1| Putative ribosome maturation factor rimN [Cronobacter turicensis z3032] Length = 190 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 63/137 (45%), Gaps = 6/137 (4%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH---ASVDPLSL 81 IA PTE V+G+ D + TA++RL E+K+RP LI ++ +K + A++ P Sbjct: 23 IAYPTEAVFGVGCDPDSETAVKRLLELKQRPMEKGLILIAANFEQLKPYIDDAALTPEQR 82 Query: 82 HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140 WPGP+T V ++T T + RV L E +G PL SA Sbjct: 83 EAVFACWPGPVTFVFPAKASTPR--WLTGRFDSLAVRVTNHPQVIALCEAFGKPLVSTSA 140 Query: 141 NRSGQISITNVKHILSS 157 N SG + +L+ Sbjct: 141 NLSGLEPCRTAQEVLAQ 157 >gi|212277721|sp|A4WF91|RIMN_ENT38 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN Length = 190 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 58/124 (46%), Gaps = 6/124 (4%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 IA PTE V+G+ D + TA+ RL E+K+RP LI ++ +K + L+ Sbjct: 23 IAYPTEAVFGVGCDPDSETAVTRLLELKQRPVEKGLILIAANFEQLKPYIDDSMLTEQQR 82 Query: 85 KLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140 WPGP+T V L +T T + RV +L ET+G PL SA Sbjct: 83 NTIFSAWPGPVTFVFPALPST--PSWLTGRFDSLAVRVTDHPLVVELCETFGKPLVSTSA 140 Query: 141 NRSG 144 N +G Sbjct: 141 NLTG 144 >gi|28199639|ref|NP_779953.1| hypothetical protein PD1768 [Xylella fastidiosa Temecula1] gi|81438360|sp|Q87AQ5|RIMN_XYLFT RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|212288258|sp|B2I8S9|RIMN_XYLF2 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|28057754|gb|AAO29602.1| conserved hypothetical protein [Xylella fastidiosa Temecula1] Length = 187 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 81/183 (44%), Gaps = 5/183 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +A L G IA PTE V+GL D R TA+ L IK+R + LI ++++ ++ Sbjct: 7 LSEAVTALQQGDVIAYPTEAVWGLGCDPRQETAVHTLLNIKQRASGKGLILVTAELNTLQ 66 Query: 72 KHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128 +D LS LH + WPGP T VL ST H ++ + A L Sbjct: 67 DWLDLDTLSPERLHEVQASWPGPHTWVLP-ASTRAPHWITGHHNGLAVRISAHPLVSALC 125 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 + L SAN +GQ + L S+ + I+DG + ++I + + Sbjct: 126 RAWNMALISTSANVAGQPPARR-REDLDPSLLPHLAGIVDGPTGGLAQPTSIRDARSGHI 184 Query: 189 VRI 191 +R+ Sbjct: 185 LRL 187 >gi|323142784|ref|ZP_08077497.1| Sua5/YciO/YrdC/YwlC family protein [Succinatimonas hippei YIT 12066] gi|322417429|gb|EFY08050.1| Sua5/YciO/YrdC/YwlC family protein [Succinatimonas hippei YIT 12066] Length = 189 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 63/142 (44%), Gaps = 6/142 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + KA E L G + PTE +YG++ + N A+ R+ ++K+R + LI VS Sbjct: 2 DDPKIVKAAEILKQGGVVIAPTEGLYGVSCLASNDRAVERVIKVKERSSAKGLIVAVSSF 61 Query: 68 SMVKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 M + LS + WPGP T ++ + + L T R T Sbjct: 62 EMAQSLIDFSKLSSGNIDFMLSMWPGPHTFIVP--AAKSVSSLVTGGRDNIALRFTAFST 119 Query: 125 -KKLIETYGHPLAIPSANRSGQ 145 ++L E G PL SAN SGQ Sbjct: 120 LQRLCELSGGPLISSSANISGQ 141 >gi|323493845|ref|ZP_08098963.1| Sua5/YciO/YrdC family protein [Vibrio brasiliensis LMG 20546] gi|323311979|gb|EGA65125.1| Sua5/YciO/YrdC family protein [Vibrio brasiliensis LMG 20546] Length = 185 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/140 (30%), Positives = 63/140 (45%), Gaps = 6/140 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + KA L G IA PTE V+G+ D +P AI +L ++K+RP LI + Sbjct: 2 DNFDKALSALRNGEVIAYPTEGVFGVGCDPDSPQAIEKLLKLKQRPIEKGLILIAASYQQ 61 Query: 70 VKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + + LS L + WPGP+T V+ + + + + RV + Sbjct: 62 LLPYIDESQLSAEQLQQVQKSWPGPVTWVMPC--SDKVSDWVSGQYDSIAVRVSDHPLVQ 119 Query: 126 KLIETYGHPLAIPSANRSGQ 145 K+ +G PL SAN SGQ Sbjct: 120 KMCNAFGKPLTSTSANLSGQ 139 >gi|296104309|ref|YP_003614455.1| hypothetical protein ECL_03972 [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058768|gb|ADF63506.1| hypothetical protein ECL_03972 [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 201 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 54/197 (27%), Positives = 91/197 (46%), Gaps = 22/197 (11%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L G + +PT+T Y LA D N A +++Y++KKR PL V++ + + +VD Sbjct: 11 LKRGEVVLVPTDTNYALAADPWNIDACQKIYDLKKRERQKPLTLFVAEPAQAWDYIAVDK 70 Query: 79 LSLHLAKL-----FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT---KKLIET 130 + H A L PG L +V+ +P LK + C +++I Sbjct: 71 VQ-HRAALDKLIGAMPGALNVVVPASDNVPQNPY----LKPESISLVCNHQSVLREVIAL 125 Query: 131 YGHPLAIPSANRSG-----QISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +G PL + SAN SG I I + + +P + + + STIV++ Sbjct: 126 FGRPLGMSSANLSGVESDCLIDIDAARQTFGDRVGYILPAVQRPVTT---VSSTIVSL-L 181 Query: 186 EKKVRILRPGGLEIETL 202 EK+++ILR G ++I + Sbjct: 182 EKEIKILRAGDMDIMAM 198 >gi|255007792|ref|ZP_05279918.1| putative Sua5/yciO/yrdC family protein [Bacteroides fragilis 3_1_12] gi|313145497|ref|ZP_07807690.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313134264|gb|EFR51624.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 204 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 57/195 (29%), Positives = 89/195 (45%), Gaps = 13/195 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSDISMV 70 L++ + L+ G I PT+T+Y + AI R+ IK+ P N L D+S + Sbjct: 15 LQRIVDLLNDGGLIIYPTDTMYAIGCHGLKERAIERICRIKEIDPKKNNLSIICYDLSSI 74 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF----TKK 126 ++A VD L K PGP T + L+ T+ P N K R+P + Sbjct: 75 SEYAKVDNNIFKLMKRNLPGPFTFI---LNGTNRLPKIFRNRKEVGIRMPDNHIIREIAR 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQC 185 L++ +P IT+ ++ ++ L+IDGGI G+E STIVN Sbjct: 132 LLDAPIMTTTLPHDEHEDIEYITD-PELIDEKFGDQVDLVIDGGIG--GIEPSTIVNC-T 187 Query: 186 EKKVRILRPGGLEIE 200 + +V I+R G E+E Sbjct: 188 DGEVTIVRQGKGELE 202 >gi|91226311|ref|ZP_01261151.1| Sua5/YciO/YrdC family protein [Vibrio alginolyticus 12G01] gi|269966992|ref|ZP_06181062.1| Sua5/YciO/YrdC family protein [Vibrio alginolyticus 40B] gi|91189322|gb|EAS75601.1| Sua5/YciO/YrdC family protein [Vibrio alginolyticus 12G01] gi|269828386|gb|EEZ82650.1| Sua5/YciO/YrdC family protein [Vibrio alginolyticus 40B] Length = 185 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 6/130 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L G IA PTE V+G+ D NP AI++L E+K+RP LI + + + Sbjct: 11 LKQGEVIAYPTEGVFGVGCDPDNPEAIQKLLELKQRPVEKGLILIAASYDQLLPYIDESQ 70 Query: 79 LS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134 L+ L WPGP T ++ ++ + + + RV +K+ +G P Sbjct: 71 LTEEQLQTVHATWPGPYTWIMP--ASDKVSNWVSGQFDSIAVRVTDHPLVQKMCNAFGKP 128 Query: 135 LAIPSANRSG 144 L SAN SG Sbjct: 129 LTSTSANLSG 138 >gi|58580201|ref|YP_199217.1| hypothetical protein XOO0578 [Xanthomonas oryzae pv. oryzae KACC10331] gi|84622196|ref|YP_449568.1| hypothetical protein XOO_0539 [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188574926|ref|YP_001911855.1| Sua5/YciO/YrdC family protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|75436872|sp|Q5H5D8|RIMN_XANOR RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|123523292|sp|Q2P833|RIMN_XANOM RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|212288246|sp|B2SL46|RIMN_XANOP RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|58424795|gb|AAW73832.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84366136|dbj|BAE67294.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188519378|gb|ACD57323.1| Sua5/YciO/YrdC family protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 187 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/183 (26%), Positives = 77/183 (42%), Gaps = 7/183 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L A L G IA PTE V+GL D R A+ RL EIK+RP +I S + +++ Sbjct: 7 LDNAVATLTQGGVIAYPTEAVWGLGCDPRQEAAVLRLLEIKRRPVDKGVIVVTSRVDVLR 66 Query: 72 KHASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 +D P WPGP T +L + T T R+ L Sbjct: 67 DWVDIDALAPARRQDVLASWPGPHTWILPV--TARAPRWVTGEHDGLAVRISAHPVVAAL 124 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +G PL SAN +G+ + + L ++ I ++DG + + + I + + + Sbjct: 125 CAAWGAPLVSTSANLAGEPPARS-RAALEPALLATIDGVVDGEVGALAQPTRIRDARSGQ 183 Query: 188 KVR 190 +R Sbjct: 184 ILR 186 >gi|99034957|ref|ZP_01314762.1| hypothetical protein Wendoof_01000418 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 92 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/80 (40%), Positives = 45/80 (56%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 + L + PTETVY LA ++ + +I ++Y+IKKR PL VSDI + K A V Sbjct: 9 IQNNLLVCFPTETVYALACNALDNESIGKIYQIKKRSQNKPLSIFVSDIYNLTKIAKVKE 68 Query: 79 LSLHLAKLFWPGPLTLVLDL 98 + L F PGP+T +L L Sbjct: 69 RYIDLINHFSPGPITYILPL 88 >gi|88855317|ref|ZP_01129981.1| translation factor [marine actinobacterium PHSC20C1] gi|88815224|gb|EAR25082.1| translation factor [marine actinobacterium PHSC20C1] Length = 218 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 55/198 (27%), Positives = 88/198 (44%), Gaps = 25/198 (12%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-L 83 + IPT+TVYG+A D+ P A+++L + K R +P + I + A+ P + L Sbjct: 30 VVIPTDTVYGVAADAFQPDAVQKLIDAKGRTRQSPPPVLIPGIPTLDALAAEVPDEVRTL 89 Query: 84 AKLFWPGPLTLVLDL-----LSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIP 138 FWPG LT++L D H T R+P + + PLA+ Sbjct: 90 VAEFWPGGLTIILPAQPSLSWDLGDTH-------GTVALRMPSSRIALELLSETGPLAVS 142 Query: 139 SANRSG---QISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC----EKKVRI 191 SAN +G S + +L S+ + +D G L STIV+ K+RI Sbjct: 143 SANSTGLPAARSAAEAQQMLGDSVS----VYLDEGEGG-ELASTIVDATGLLTEGGKLRI 197 Query: 192 LRPGGLEIETLKRAISVE 209 +R G + E +++ I + Sbjct: 198 VREGVIPSEAIRKLIGAD 215 >gi|302529791|ref|ZP_07282133.1| SUA5/YciO/YrdC/YwlC [Streptomyces sp. AA4] gi|302438686|gb|EFL10502.1| SUA5/YciO/YrdC/YwlC [Streptomyces sp. AA4] Length = 228 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 58/200 (29%), Positives = 94/200 (47%), Gaps = 22/200 (11%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLSLHL 83 + +PT+TVYG+ D+ + A++ L K R P+ V S V V P + L Sbjct: 42 VVLPTDTVYGIGADAFDSGAVQALLRAKNRGPDMPVGVLVGSWSTVDGLVLGVPPQARAL 101 Query: 84 AKLFWPGPLTLVLDLLSTTDIH-PLSTANL----KTACFRVPCG-FTKKLIETYGHPLAI 137 + FWPG L++VL H P NL T R+P +L+ G P+A+ Sbjct: 102 IEAFWPGDLSIVLP-------HAPSLQWNLGNSRGTVMLRMPLHPVALELLRDVG-PMAV 153 Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197 SAN SG+ + V+ + + + +DGG S + S+IV++ +K + +LR G Sbjct: 154 SSANVSGRSPASTVEDA-QEQLGDSVSVYLDGGSSGETVASSIVDLTGDKPL-VLREG-- 209 Query: 198 EIETLKRAISVELEYCVDET 217 T+ +A E+ +ET Sbjct: 210 ---TVTKAAIAEVIGVAEET 226 >gi|260804903|ref|XP_002597327.1| hypothetical protein BRAFLDRAFT_203412 [Branchiostoma floridae] gi|229282590|gb|EEN53339.1| hypothetical protein BRAFLDRAFT_203412 [Branchiostoma floridae] Length = 372 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 14/159 (8%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +N +++ E + AG +PT+TVY L P A+ R Y KK+ P+ +S +S Sbjct: 205 ANGVKQIAELMKAGGICGMPTDTVYVLVAACNRPAAVERAYRTKKQAEERPMSIWISQLS 264 Query: 69 MVK-KHASVDPLSLHLAKLFWPGPLTLV--------LDLLSTTD-IHPLSTANLKTACFR 118 ++ PL K WP ++L LD D H + T ++ R Sbjct: 265 QLEPAREEFGPLLWDFMKEVWPSSISLYYVHLPGPWLDRFGLGDSAHYIGTP--ESIAIR 322 Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILS 156 +P C LI+ G P+A+ SAN SG+ T+ +L+ Sbjct: 323 IPDCTVATHLIDLVG-PIAVTSANPSGEADTTHHSQVLA 360 >gi|154492885|ref|ZP_02032511.1| hypothetical protein PARMER_02524 [Parabacteroides merdae ATCC 43184] gi|154087190|gb|EDN86235.1| hypothetical protein PARMER_02524 [Parabacteroides merdae ATCC 43184] Length = 186 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 18/164 (10%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 ++KACE + AG I PT+T++G+ D+ N A++++YE+KKR ++ + + Sbjct: 5 IQKACEIMQAGGIILYPTDTIWGIGCDATNEKAVQKVYELKKRTDNKAMLVLTDSSAKLS 64 Query: 72 KHASVDP-LSLHLAK-------LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 + S P ++ L + + +P L +LL + N + F Sbjct: 65 MYVSDMPDIAWDLIEVADKPLTIIYPHAKNLASNLLGEDGSVGIRVTNEE---------F 115 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 ++KL E + PL SAN SG+ S N + S SI + I+ Sbjct: 116 SRKLCERFRRPLVSTSANVSGEPSPGNFSEV-SDSIKNGVDYIV 158 >gi|28899809|ref|NP_799414.1| Sua5/YciO/YrdC family protein [Vibrio parahaemolyticus RIMD 2210633] gi|153837692|ref|ZP_01990359.1| protein YrdC [Vibrio parahaemolyticus AQ3810] gi|260362026|ref|ZP_05775031.1| Sua5/YciO/YrdC family protein [Vibrio parahaemolyticus K5030] gi|260876487|ref|ZP_05888842.1| Sua5/YciO/YrdC family protein [Vibrio parahaemolyticus AN-5034] gi|260897456|ref|ZP_05905952.1| Sua5/YciO/YrdC family protein [Vibrio parahaemolyticus Peru-466] gi|260901347|ref|ZP_05909742.1| Sua5/YciO/YrdC family protein [Vibrio parahaemolyticus AQ4037] gi|81726622|sp|Q87KE2|RIMN_VIBPA RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|28808061|dbj|BAC61298.1| Sua5/YciO/YrdC family protein [Vibrio parahaemolyticus RIMD 2210633] gi|149748982|gb|EDM59809.1| protein YrdC [Vibrio parahaemolyticus AQ3810] gi|308087914|gb|EFO37609.1| Sua5/YciO/YrdC family protein [Vibrio parahaemolyticus Peru-466] gi|308090420|gb|EFO40115.1| Sua5/YciO/YrdC family protein [Vibrio parahaemolyticus AN-5034] gi|308109865|gb|EFO47405.1| Sua5/YciO/YrdC family protein [Vibrio parahaemolyticus AQ4037] gi|308114150|gb|EFO51690.1| Sua5/YciO/YrdC family protein [Vibrio parahaemolyticus K5030] gi|328471159|gb|EGF42061.1| Sua5/YciO/YrdC family protein [Vibrio parahaemolyticus 10329] Length = 185 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 6/130 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH---AS 75 L G IA PTE V+G+ D NP AI++L ++K+RP LI + + + + Sbjct: 11 LQQGEVIAYPTEGVFGVGCDPDNPDAIQKLLDLKQRPVEKGLILIAASYEQLLPYIDESQ 70 Query: 76 VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134 + P L WPGP T ++ ++ + + + RV +K+ +G P Sbjct: 71 LTPEQLATVHATWPGPYTWIMP--ASDKVSNWVSGQFDSIAVRVTDHPLVQKMCNAFGKP 128 Query: 135 LAIPSANRSG 144 L SAN SG Sbjct: 129 LTSTSANLSG 138 >gi|212213462|ref|YP_002304398.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii CbuG_Q212] gi|212011872|gb|ACJ19253.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii CbuG_Q212] Length = 186 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 77/168 (45%), Gaps = 9/168 (5%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ A + L G IA PTE VYGL D N A+ +L IKKR I S+ Sbjct: 5 TQSINDAVKCLRQGGVIAYPTEAVYGLGCDPFNHDAVAQLLTIKKRSIKKGFILIASEWK 64 Query: 69 MVKKHAS-VDPLSLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 V+ +DP + LA++F WPGP T ++ + T T RV Sbjct: 65 QVEPLTEPIDPKA--LARVFDTWPGPFTWTFP--ASKEAPHWITGQHSTIAIRVTAHPLA 120 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172 K L + + PL SAN+ G+ I +VK IL +I I++G + Sbjct: 121 KLLCQRFAGPLISSSANQEGEPPIRDVK-ILRLVFGNKIDKILEGSLG 167 >gi|296170242|ref|ZP_06851835.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895118|gb|EFG74836.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 222 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 52/189 (27%), Positives = 86/189 (45%), Gaps = 7/189 (3%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-L 83 + +PT+TVYG+ D+ N A+ L K R P+ V ++ P L Sbjct: 33 VVMPTDTVYGIGADAFNSAAVTALLSAKGRGRDMPVGVLVGSWHTIEGLVYTMPGGARDL 92 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142 + FWPG L+LV+ + L A T R+P +L+ G P+A+ SAN Sbjct: 93 IRAFWPGALSLVVTQAPSLQWD-LGDAR-GTVMLRMPLHPVAIELLREVG-PMAVSSANV 149 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202 SG+ + + + + + + +D G ++ STIV++ RILRPG + E + Sbjct: 150 SGRPAAVDAAEA-RDQLGELVDVYLDAGTAQQQAASTIVDLTGPAP-RILRPGPVSAERI 207 Query: 203 KRAISVELE 211 + V+ E Sbjct: 208 AEVLGVDAE 216 >gi|269216191|ref|ZP_06160045.1| Sua5/YciO/YrdC/YwlC family protein [Slackia exigua ATCC 700122] gi|269130450|gb|EEZ61528.1| Sua5/YciO/YrdC/YwlC family protein [Slackia exigua ATCC 700122] Length = 220 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/187 (26%), Positives = 85/187 (45%), Gaps = 6/187 (3%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLS 80 G + PT+TVYG+ V + +Y IK+R A + V + + ++ V + Sbjct: 31 GKAVVFPTDTVYGIGVSVAHARTPDLIYGIKRRDAGKAIPWLVGSMDDLMRYGRDVPSYA 90 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPS 139 LA FWPG LTL+ + ++ + P T R+P + +I G P+A S Sbjct: 91 SALAHAFWPGALTLI--VRASAAVPPAFVGTGGTIALRMPDDEWALAVIRAVGCPMATSS 148 Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEI 199 AN + +++ +S+ + + I ++ G STI + RILR GG+ Sbjct: 149 ANIQAH-TPPHLRSEVSAEVRSGVAACIGDERARSGRSSTIADCT-GAAFRILRAGGVSE 206 Query: 200 ETLKRAI 206 E ++ A+ Sbjct: 207 EAMRDAV 213 >gi|289667887|ref|ZP_06488962.1| Sua5/YciO/YrdC family protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 187 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/183 (26%), Positives = 76/183 (41%), Gaps = 7/183 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L A L G IA PTE V+GL D R A+ RL EIK+RP +I + +++ Sbjct: 7 LDNAVATLTQGGVIAYPTEAVWGLGCDPRQEAAVMRLLEIKRRPVYKGVIVVAPSVDVLR 66 Query: 72 KHASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 +D P WPGP T +L + T T R+ L Sbjct: 67 DWVDIDALEPARRQDVLASWPGPHTWILPV--TARAPRWVTGEHDGLAVRISTHPVVAAL 124 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +G PL SAN +G+ + + L ++ I ++DG + + + I + + + Sbjct: 125 CAAWGAPLVSTSANLAGEPPARS-RAALDPALLATIDGVVDGEVGTLAQPTQIRDARSGQ 183 Query: 188 KVR 190 +R Sbjct: 184 ILR 186 >gi|307729238|ref|YP_003906462.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. CCGE1003] gi|307583773|gb|ADN57171.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. CCGE1003] Length = 211 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 54/195 (27%), Positives = 93/195 (47%), Gaps = 11/195 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A + ++ G +A+PT++ Y LA + A+ RL I+ L V D+S + Sbjct: 17 VKQAVQIINDGGVVALPTDSSYALACHLDDKNAVERLRRIRGLDEKQLLSLLVRDLSELA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129 A VD L K PGP VL +T ++ LS + KT RVP T ++ Sbjct: 77 NFAMVDNRQYRLIKSVTPGPYVFVLQ--ATKEVPRRLSHPSRKTIGLRVPDHAITLAILG 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL + G+ + N + + + K++ L+IDGG + + ST++++ ++ V Sbjct: 135 ELGQPLLGSTLILPGETAPLNDPEEIRARLEKQLDLVIDGG-ACVCEPSTVIDLTGDEPV 193 Query: 190 RI------LRPGGLE 198 + L P GLE Sbjct: 194 LVRAGRGSLAPFGLE 208 >gi|13096287|pdb|1HRU|A Chain A, The Structure Of The Yrdc Gene Product From E.Coli gi|13096288|pdb|1HRU|B Chain B, The Structure Of The Yrdc Gene Product From E.Coli Length = 188 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/139 (32%), Positives = 66/139 (47%), Gaps = 6/139 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +A+ A + L+ IA PTE V+G+ D + TA+ RL E+K+RP LI ++ Sbjct: 8 DAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVXRLLELKQRPVDKGLILIAANYEQ 67 Query: 70 VKKHASVDPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 +K + L+ + +F WPGP+T V +TT T + RV Sbjct: 68 LKPYIDDTXLTDVQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVV 125 Query: 126 KLIETYGHPLAIPSANRSG 144 L + YG PL SAN SG Sbjct: 126 ALCQAYGKPLVSTSANLSG 144 >gi|302558379|ref|ZP_07310721.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces griseoflavus Tu4000] gi|302475997|gb|EFL39090.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces griseoflavus Tu4000] Length = 215 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 60/219 (27%), Positives = 94/219 (42%), Gaps = 45/219 (20%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR------PAM----N 58 + LR+A + G + +PT+TVYG+ D+ P A+ L E K R P + N Sbjct: 14 ATGLREAASAVRRGELVVLPTDTVYGIGADAFTPDAVGDLLEAKGRGRNMPSPVLIGSPN 73 Query: 59 PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLV--------LDLLSTTDIHPLSTA 110 L V+D S ++ L FWPG LTLV DL T Sbjct: 74 TLHGLVTDFSE---------MAWELVDAFWPGALTLVARHQPSLQWDLGDTR-------- 116 Query: 111 NLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITN---VKHILSSSICKEIPLII 167 T R+P + T P+A+ SAN +G + + + +L S+ + + Sbjct: 117 --GTVAVRMPLHPVAIELLTEVGPMAVSSANLTGHPAPEDCDAAQEMLGDSVS----VYL 170 Query: 168 DGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAI 206 DGG + + S+IV+V V +LR G + E L++ + Sbjct: 171 DGGPTPGNVPSSIVDVTRPVPV-LLREGAISPEELRKVV 208 >gi|18424373|ref|NP_568924.1| yrdC protein-related [Arabidopsis thaliana] gi|14190379|gb|AAK55670.1|AF378867_1 AT5g60590/muf9_240 [Arabidopsis thaliana] gi|15215871|gb|AAK91479.1| AT5g60590/muf9_240 [Arabidopsis thaliana] gi|332009968|gb|AED97351.1| DHBP synthase RibB-like alpha/beta domain-containing protein [Arabidopsis thaliana] Length = 164 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 50/85 (58%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 ++A E + + IA+PT+T+YG A D+ + A+ R+YEIK R +PL V D+ +K+ Sbjct: 77 QEAIEAIKSEKVIAVPTDTLYGFACDACSLEAVSRIYEIKGRKLTSPLAICVGDVLDIKR 136 Query: 73 HASVDPLSLHLAKLFWPGPLTLVLD 97 A+ L L PGP+TLVL Sbjct: 137 VATTSHLPHGLLDSLLPGPVTLVLQ 161 >gi|331654875|ref|ZP_08355874.1| protein YrdC [Escherichia coli M718] gi|331046890|gb|EGI18968.1| protein YrdC [Escherichia coli M718] Length = 205 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 68/150 (45%), Gaps = 6/150 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +A+ A + L+ IA PTE V+G+ D + TA+ RL E+K+RP LI ++ Sbjct: 22 GDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYE 81 Query: 69 MVKKHASVDPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 +K + L+ + +F WPGP+T V +TT T + RV Sbjct: 82 QLKPYIDDTMLTDVQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLV 139 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHI 154 L + YG PL SAN SG V + Sbjct: 140 VALCQAYGKPLVSTSANLSGLAPCRTVDEV 169 >gi|116626156|ref|YP_828312.1| translation factor SUA5 [Candidatus Solibacter usitatus Ellin6076] gi|116229318|gb|ABJ88027.1| translation factor SUA5 [Candidatus Solibacter usitatus Ellin6076] Length = 212 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 90/190 (47%), Gaps = 7/190 (3%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 AL +A + G +AIPT+ +Y L D N A+ +++ K R L + D M Sbjct: 16 EALERAAAAVRRGKVVAIPTDALYTLVADPYNLRAVTGVFQAKGREPHRALPILIRDSMM 75 Query: 70 VKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCGFTKKL 127 ++ AS ++ LA+ FWPGPLT+++ + + +T L R P KL Sbjct: 76 AEELASELNNRFFILARRFWPGPLTVIVPAAAKIPLKVTGNTGRLALRHARSPVA--DKL 133 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I PL SAN SG + + + + + L++DGG + +G ST V++ E Sbjct: 134 IALLNQPLISTSANISGHPTCHSGIDVF-GMMDGRVDLVLDGG-TCVGEGSTTVDI-TEP 190 Query: 188 KVRILRPGGL 197 R+++ G + Sbjct: 191 YWRMIKEGAI 200 >gi|325474033|gb|EGC77221.1| Sua5/YciO/YrdC/YwlC family protein [Treponema denticola F0402] Length = 184 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 59/193 (30%), Positives = 94/193 (48%), Gaps = 18/193 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D +L A L G I +PT+TVYG + P ++ +IKKR A I + Sbjct: 7 DPKSLETAASVLKKGEIIIVPTDTVYGFS--GIMPFTKEKIIKIKKRGAEKSFISLIEKP 64 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + K+ P+ L L WP PL++++ T+ FR P + + Sbjct: 65 QDIYKYTDT-PVPEILLNL-WPAPLSIIVR----------DKEGRGTSAFRCPDDVWLRN 112 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LI G P+ S N SG+ +++++ I+ S ++ LI+DGG K GL STIV++ + Sbjct: 113 LIGLTGFPIYSTSVNYSGEPVLSDIRDII-SEFEDKVSLIVDGGEQK-GLSSTIVSL-TD 169 Query: 187 KKVRILRPGGLEI 199 K+ I+R G L+I Sbjct: 170 KEPCIIRQGALKI 182 >gi|189461485|ref|ZP_03010270.1| hypothetical protein BACCOP_02144 [Bacteroides coprocola DSM 17136] gi|189431819|gb|EDV00804.1| hypothetical protein BACCOP_02144 [Bacteroides coprocola DSM 17136] Length = 188 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 5/138 (3%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + ++KACE + G I PT+TV+G+ D+ N A++R+YEIK R ++ V Sbjct: 4 DEIKKACEIMQKGGVILYPTDTVWGIGCDATNEEAVKRVYEIKHRADSKAMLVLVDSPVK 63 Query: 70 VKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 V + S V P++ L ++ P T++ D ++ P A + RV F+K+L Sbjct: 64 VDFYVSDVPPVAWDLIEMT-TKPFTIIYD--GARNLAPNLLAEDGSVGIRVTNETFSKEL 120 Query: 128 IETYGHPLAIPSANRSGQ 145 + + SAN SGQ Sbjct: 121 CFRFRKAIVSTSANISGQ 138 >gi|170769585|ref|ZP_02904038.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia albertii TW07627] gi|170121642|gb|EDS90573.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia albertii TW07627] Length = 190 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 76/164 (46%), Gaps = 11/164 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +A+ A + L+ IA PTE V+G+ D + TA+ RL ++K+RP LI ++ Sbjct: 7 GDAIASAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLDLKQRPVDKGLILIAANYE 66 Query: 69 MVKKHASVDPLSLHLAK---LF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 +K + +D L A+ +F WPGP+T V STT T + RV Sbjct: 67 QLKPY--IDDSMLTKAQRETIFSRWPGPVTFVFPAPSTT--PRWLTGRFDSLAVRVTDHP 122 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLI 166 L + YG PL SAN SG V+ + + E P++ Sbjct: 123 LVVALCQAYGKPLVSSSANLSGLPPCRTVEEV-RAQFGVEFPVV 165 >gi|15608441|ref|NP_215817.1| hypothetical protein Rv1301 [Mycobacterium tuberculosis H37Rv] gi|15840751|ref|NP_335788.1| hypothetical protein MT1340 [Mycobacterium tuberculosis CDC1551] gi|148661089|ref|YP_001282612.1| hypothetical protein MRA_1309 [Mycobacterium tuberculosis H37Ra] gi|148822519|ref|YP_001287273.1| hypothetical protein TBFG_11328 [Mycobacterium tuberculosis F11] gi|167969628|ref|ZP_02551905.1| hypothetical protein MtubH3_17041 [Mycobacterium tuberculosis H37Ra] gi|215403143|ref|ZP_03415324.1| hypothetical protein Mtub0_05486 [Mycobacterium tuberculosis 02_1987] gi|215410940|ref|ZP_03419748.1| hypothetical protein Mtub9_06325 [Mycobacterium tuberculosis 94_M4241A] gi|215445479|ref|ZP_03432231.1| hypothetical protein MtubT_05893 [Mycobacterium tuberculosis T85] gi|218753009|ref|ZP_03531805.1| hypothetical protein MtubG1_05995 [Mycobacterium tuberculosis GM 1503] gi|253799653|ref|YP_003032654.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis KZN 1435] gi|254231559|ref|ZP_04924886.1| conserved hypothetical protein [Mycobacterium tuberculosis C] gi|254364198|ref|ZP_04980244.1| conserved hypothetical protein [Mycobacterium tuberculosis str. Haarlem] gi|254550309|ref|ZP_05140756.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|289554909|ref|ZP_06444119.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605] gi|289745047|ref|ZP_06504425.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|289757401|ref|ZP_06516779.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis T85] gi|289761456|ref|ZP_06520834.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|297633853|ref|ZP_06951633.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis KZN 4207] gi|297730840|ref|ZP_06959958.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis KZN R506] gi|298524805|ref|ZP_07012214.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|306775473|ref|ZP_07413810.1| hypothetical protein TMAG_01936 [Mycobacterium tuberculosis SUMu001] gi|306781616|ref|ZP_07419953.1| hypothetical protein TMBG_01305 [Mycobacterium tuberculosis SUMu002] gi|306784025|ref|ZP_07422347.1| hypothetical protein TMCG_00932 [Mycobacterium tuberculosis SUMu003] gi|306788388|ref|ZP_07426710.1| hypothetical protein TMDG_01180 [Mycobacterium tuberculosis SUMu004] gi|306792715|ref|ZP_07431017.1| hypothetical protein TMEG_01198 [Mycobacterium tuberculosis SUMu005] gi|306797121|ref|ZP_07435423.1| hypothetical protein TMFG_02493 [Mycobacterium tuberculosis SUMu006] gi|306803001|ref|ZP_07439669.1| hypothetical protein TMHG_00486 [Mycobacterium tuberculosis SUMu008] gi|306807191|ref|ZP_07443859.1| hypothetical protein TMGG_01864 [Mycobacterium tuberculosis SUMu007] gi|306967390|ref|ZP_07480051.1| hypothetical protein TMIG_02976 [Mycobacterium tuberculosis SUMu009] gi|306971582|ref|ZP_07484243.1| hypothetical protein TMJG_03944 [Mycobacterium tuberculosis SUMu010] gi|307079296|ref|ZP_07488466.1| hypothetical protein TMKG_01801 [Mycobacterium tuberculosis SUMu011] gi|307083865|ref|ZP_07492978.1| hypothetical protein TMLG_02639 [Mycobacterium tuberculosis SUMu012] gi|313658172|ref|ZP_07815052.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis KZN V2475] gi|1722959|sp|Q10618|Y1301_MYCTU RecName: Full=Uncharacterized protein Rv1301/MT1340 gi|1322425|emb|CAA97734.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv] gi|13880943|gb|AAK45602.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis CDC1551] gi|124600618|gb|EAY59628.1| conserved hypothetical protein [Mycobacterium tuberculosis C] gi|134149712|gb|EBA41757.1| conserved hypothetical protein [Mycobacterium tuberculosis str. Haarlem] gi|148505241|gb|ABQ73050.1| conserved hypothetical protein [Mycobacterium tuberculosis H37Ra] gi|148721046|gb|ABR05671.1| conserved hypothetical protein [Mycobacterium tuberculosis F11] gi|253321156|gb|ACT25759.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis KZN 1435] gi|289439541|gb|EFD22034.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605] gi|289685575|gb|EFD53063.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|289708962|gb|EFD72978.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|289712965|gb|EFD76977.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis T85] gi|298494599|gb|EFI29893.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|308216021|gb|EFO75420.1| hypothetical protein TMAG_01936 [Mycobacterium tuberculosis SUMu001] gi|308325578|gb|EFP14429.1| hypothetical protein TMBG_01305 [Mycobacterium tuberculosis SUMu002] gi|308331258|gb|EFP20109.1| hypothetical protein TMCG_00932 [Mycobacterium tuberculosis SUMu003] gi|308335074|gb|EFP23925.1| hypothetical protein TMDG_01180 [Mycobacterium tuberculosis SUMu004] gi|308338882|gb|EFP27733.1| hypothetical protein TMEG_01198 [Mycobacterium tuberculosis SUMu005] gi|308342496|gb|EFP31347.1| hypothetical protein TMFG_02493 [Mycobacterium tuberculosis SUMu006] gi|308346430|gb|EFP35281.1| hypothetical protein TMGG_01864 [Mycobacterium tuberculosis SUMu007] gi|308350301|gb|EFP39152.1| hypothetical protein TMHG_00486 [Mycobacterium tuberculosis SUMu008] gi|308355002|gb|EFP43853.1| hypothetical protein TMIG_02976 [Mycobacterium tuberculosis SUMu009] gi|308358950|gb|EFP47801.1| hypothetical protein TMJG_03944 [Mycobacterium tuberculosis SUMu010] gi|308362832|gb|EFP51683.1| hypothetical protein TMKG_01801 [Mycobacterium tuberculosis SUMu011] gi|308366498|gb|EFP55349.1| hypothetical protein TMLG_02639 [Mycobacterium tuberculosis SUMu012] gi|323720258|gb|EGB29357.1| hypothetical protein TMMG_01997 [Mycobacterium tuberculosis CDC1551A] gi|326902923|gb|EGE49856.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis W-148] gi|328459399|gb|AEB04822.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 4207] Length = 217 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 55/203 (27%), Positives = 96/203 (47%), Gaps = 7/203 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S + A + AG + +PT+TVYG+ D+ + +A+ L K R P+ V Sbjct: 14 SRGIVSAVGAIKAGQLVVMPTDTVYGIGADAFDSSAVAALLSAKGRGRDMPVGVLVGSWH 73 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 ++ S+ + L + FWPG L+LV+ + + + L A+ T R+P + Sbjct: 74 TIEGLVYSMPDGARELIRAFWPGALSLVV-VQAPSLQWDLGDAH-GTVMLRMPLHPVAIE 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+ G P+A+ SAN SG + + S + + + +D G S+ STIV++ Sbjct: 132 LLREVG-PMAVSSANISGHPPPVDAEQA-RSQLGDHVAVYLDAGPSEQQAGSTIVDLTGA 189 Query: 187 KKVRILRPGGLEIETLKRAISVE 209 R+LRPG + E + + V+ Sbjct: 190 TP-RVLRPGPVSTERIAEVLGVD 211 >gi|82545645|ref|YP_409592.1| ribosome maturation factor [Shigella boydii Sb227] gi|123558527|sp|Q31VZ4|RIMN_SHIBS RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|81247056|gb|ABB67764.1| conserved hypothetical protein [Shigella boydii Sb227] gi|320187004|gb|EFW61716.1| putative ribosome maturation factor [Shigella flexneri CDC 796-83] gi|332090353|gb|EGI95451.1| ribosome maturation factor [Shigella boydii 3594-74] Length = 190 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 68/142 (47%), Gaps = 10/142 (7%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +A+ A + L+ IA PTE V+G+ D + TA+ RL E+K+RP LI ++ Sbjct: 7 GDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYE 66 Query: 69 MVKKHASVDPLSLHLAK---LF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 +K + +D L A+ +F WPGP+T V +TT T + RV Sbjct: 67 QLKPY--IDDTMLTDAQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHP 122 Query: 123 FTKKLIETYGHPLAIPSANRSG 144 L + YG PL SAN SG Sbjct: 123 LVVALCQAYGKPLVSTSANLSG 144 >gi|166154358|ref|YP_001654476.1| hypothetical protein CTL0392 [Chlamydia trachomatis 434/Bu] gi|166155233|ref|YP_001653488.1| hypothetical protein CTLon_0388 [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335611|ref|ZP_07223855.1| hypothetical protein CtraL_02230 [Chlamydia trachomatis L2tet1] gi|165930346|emb|CAP03832.1| conserved hypothetical protein [Chlamydia trachomatis 434/Bu] gi|165931221|emb|CAP06786.1| conserved hypothetical protein [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 281 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 61/192 (31%), Positives = 93/192 (48%), Gaps = 19/192 (9%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-- 74 E + AG A PT+TVYGL V A +RL+ +K R + L +VS + ++ A Sbjct: 8 ESIKAGQVFAFPTDTVYGLGVSFHILDADQRLFALKHRSSQKALSVYVSSLEELEAVAQQ 67 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLIETYGH 133 S+ S + + F PGPLTL+ H KT FR V +++I+ G Sbjct: 68 SLGASSRKIIQKFLPGPLTLITK-------HNNPRFPQKTLGFRIVNHPIVQQIIQKVG- 119 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 P SAN SG S + + ++I +I G IGLEST+++ E+++ + R Sbjct: 120 PFLATSANLSGFPSAVSADEVKQDFPEEDIVMI--SGECSIGLESTVIDP--EERI-VYR 174 Query: 194 PGGL---EIETL 202 G + EIET+ Sbjct: 175 EGAISIAEIETV 186 >gi|88859929|ref|ZP_01134568.1| putative RNA binding protein with YrdC/RibB domain [Pseudoalteromonas tunicata D2] gi|88817923|gb|EAR27739.1| putative RNA binding protein with YrdC/RibB domain [Pseudoalteromonas tunicata D2] Length = 206 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 84/186 (45%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +R+A E + G I PT++ Y L N TA+ R+ I+ + L D+S + Sbjct: 17 IRQAIEVIQKGGVIVYPTDSGYALGCSIGNKTAMERIQRIRSLEKHHNLTLVCCDLSELA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129 +A VD L K PG T + T ++ L KT RVP T+ L+ Sbjct: 77 TYARVDNQMFRLVKNNTPGAYTFIFK--GTKEVPKRLLNDKKKTIGIRVPNHKITQALLA 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G P+ S GQ + ++ S + K++ LIIDGG I +T++++ + V Sbjct: 135 ELGEPIMSCSLILPGQEHTESDPEVIRSLLEKQVDLIIDGGYL-IEQATTVIDLS-DDSV 192 Query: 190 RILRPG 195 ILR G Sbjct: 193 EILRVG 198 >gi|225849196|ref|YP_002729360.1| Sua5/YciO/YrdC/YwlC family protein [Sulfurihydrogenibium azorense Az-Fu1] gi|225643744|gb|ACN98794.1| Sua5/YciO/YrdC/YwlC family protein [Sulfurihydrogenibium azorense Az-Fu1] Length = 201 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 52/193 (26%), Positives = 86/193 (44%), Gaps = 15/193 (7%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S L A ++ G + T+T+YG+ D+ N A+ ++Y+IK RP P I + Sbjct: 14 SKNLFDAIPYIKEGKLVVAKTDTIYGILADALNKEAVEKIYKIKGRPEDKPFIILIPSSH 73 Query: 69 MVKK-HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-----CG 122 +KK + DP K+ +T++ D+ T + FR+P Sbjct: 74 DLKKFNVKPDPQG---EKILNIKGITVIFDIEDPTGEFYYLHRGKNSLAFRIPDDPVFLS 130 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 F K+L G P+ PSAN S +++ + I L ID G + + STIV Sbjct: 131 FLKEL----GRPVVAPSANPSDLQPAEDIEKAI-EYFKDSIDLYIDSGKVEKNVPSTIVK 185 Query: 183 VQCEKKVRILRPG 195 V+ K++++R G Sbjct: 186 VE-NGKIKVIREG 197 >gi|300921909|ref|ZP_07138064.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 182-1] gi|301325152|ref|ZP_07218684.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 78-1] gi|300421710|gb|EFK05021.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 182-1] gi|300847984|gb|EFK75744.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 78-1] Length = 190 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 68/142 (47%), Gaps = 10/142 (7%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +A+ A + L+ IA PTE V+G+ D + TA+ RL E+K+RP LI ++ Sbjct: 7 GDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYE 66 Query: 69 MVKKHASVDPLSLHLAK---LF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 +K + +D L A+ +F WPGP+T V +TT T + RV Sbjct: 67 QLKPY--IDDTMLTDAQRETIFSRWPGPITFVFPAPATT--PRWLTGRFDSLAVRVTDHP 122 Query: 123 FTKKLIETYGHPLAIPSANRSG 144 L + YG PL SAN SG Sbjct: 123 LVVALCQAYGKPLVSTSANLSG 144 >gi|170694767|ref|ZP_02885918.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia graminis C4D1M] gi|170140398|gb|EDT08575.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia graminis C4D1M] Length = 211 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 54/195 (27%), Positives = 93/195 (47%), Gaps = 11/195 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A + ++ G +A+PT++ Y LA + A+ RL I+ L V D+S + Sbjct: 17 VKQAVQIINDGGVVALPTDSSYALACHLDDKDAVERLRRIRGLDEKQLLSLLVRDLSELA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129 A VD L K PGP VL +T ++ LS + KT RVP T ++ Sbjct: 77 NFAMVDNRQYRLIKSVTPGPYVFVLQ--ATKEVPRRLSHPSRKTIGLRVPDHAITLAILG 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL + G+ + N + + + K++ L+IDGG + + ST++++ ++ V Sbjct: 135 ELGQPLLGSTLILPGETAPLNEPEEIRARLEKQLDLVIDGG-ACVCEPSTVIDLTGDEPV 193 Query: 190 RI------LRPGGLE 198 + L P GLE Sbjct: 194 LVRAGRGSLAPFGLE 208 >gi|296159003|ref|ZP_06841831.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. Ch1-1] gi|295890878|gb|EFG70668.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. Ch1-1] Length = 211 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 4/161 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A + + G +A+PT++ Y LA + A+ RL I+ L V D+S + Sbjct: 17 VKQAVQIIKDGGVVALPTDSSYALACHLDDKEAVERLRRIRGLDEKQLLSLLVRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129 A VD L K PGP VL +T ++ LS + KT RVP T ++E Sbjct: 77 NFAMVDNRQYRLIKSVTPGPYVFVLQ--ATKEVPRRLSHPSRKTIGLRVPDHAITLAILE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 G PL + G+ N + + + K++ L+IDGG Sbjct: 135 ELGQPLLGSTLIMPGETQPLNDPEEIRARLEKQLDLVIDGG 175 >gi|167837135|ref|ZP_02464018.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia thailandensis MSMB43] Length = 209 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 74/161 (45%), Gaps = 4/161 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E + G IA+PT++ Y LA + A+ R+ I+ L V D+S + Sbjct: 17 VKQAAEIVRGGGVIALPTDSSYALACHLDDKDAVERVRRIRGLDEKQHLSLLVRDLSELA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129 A VD L K PGP +L +T ++ LS + KT RVP T L+E Sbjct: 77 TFAMVDNRQYRLIKSVTPGPYVFILQ--ATKEVPRRLSHPSRKTIGLRVPAHAITLALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 G PL + S N + + + K+I L+IDGG Sbjct: 135 ALGQPLLGTTLILSPDDEPLNDPEEIRARLEKQIDLVIDGG 175 >gi|288924800|ref|ZP_06418737.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella buccae D17] gi|315607819|ref|ZP_07882812.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella buccae ATCC 33574] gi|288338587|gb|EFC76936.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella buccae D17] gi|315250288|gb|EFU30284.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella buccae ATCC 33574] Length = 192 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 71/147 (48%), Gaps = 6/147 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV-SDISMV 70 ++ A E + G I PT+TV+G+ D+ NP A+ ++Y+IK+R LIC V SD M Sbjct: 7 IKNAVECMRKGGVILYPTDTVWGIGCDATNPEAVAKVYQIKQRDDSKALICLVDSDARMQ 66 Query: 71 KKHASVDPLSLHLAKLFWPG--PLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 K ++ ++ L G P T++LD ++ P A + R+ F+K+L Sbjct: 67 KYFRNIPSVAWELVDSTAEGGKPTTIILD--DAVNVAPNLIAEDGSLAVRITYEKFSKEL 124 Query: 128 IETYGHPLAIPSANRSGQISITNVKHI 154 + SAN SGQ + N I Sbjct: 125 CFRMQKAIVSTSANISGQPAAQNFCDI 151 >gi|218691569|ref|YP_002399781.1| putative ribosome maturation factor [Escherichia coli ED1a] gi|227883414|ref|ZP_04001219.1| ribosome maturation factor [Escherichia coli 83972] gi|300979819|ref|ZP_07174721.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 45-1] gi|301046053|ref|ZP_07193232.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 185-1] gi|331649079|ref|ZP_08350165.1| protein YrdC [Escherichia coli M605] gi|212277724|sp|Q8FD17|RIMN_ECOL6 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|218429133|emb|CAR10085.2| putative ribosome maturation factor [Escherichia coli ED1a] gi|227839558|gb|EEJ50024.1| ribosome maturation factor [Escherichia coli 83972] gi|281180317|dbj|BAI56647.1| conserved hypothetical protein [Escherichia coli SE15] gi|300301938|gb|EFJ58323.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 185-1] gi|300409425|gb|EFJ92963.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 45-1] gi|315292342|gb|EFU51694.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 153-1] gi|324009048|gb|EGB78267.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 57-2] gi|330909327|gb|EGH37841.1| YrdC subfamily, required for N6-threonylcarbamoyl adenosine t(6)A37 modification in tRNA [Escherichia coli AA86] gi|331041577|gb|EGI13721.1| protein YrdC [Escherichia coli M605] Length = 190 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 68/142 (47%), Gaps = 10/142 (7%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +A+ A + L+ IA PTE V+G+ D + TA+ RL E+K+RP LI ++ Sbjct: 7 GDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKRRPVDKGLILIAANYE 66 Query: 69 MVKKHASVDPLSLHLAK---LF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 +K + +D L A+ +F WPGP+T V +TT T + RV Sbjct: 67 QLKPY--IDDTMLTDAQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHP 122 Query: 123 FTKKLIETYGHPLAIPSANRSG 144 L + YG PL SAN SG Sbjct: 123 LVVALCQAYGKPLVSTSANLSG 144 >gi|160883231|ref|ZP_02064234.1| hypothetical protein BACOVA_01200 [Bacteroides ovatus ATCC 8483] gi|237719187|ref|ZP_04549668.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|260171883|ref|ZP_05758295.1| putative translation factor [Bacteroides sp. D2] gi|293372316|ref|ZP_06618701.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides ovatus SD CMC 3f] gi|299148260|ref|ZP_07041322.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 3_1_23] gi|315920195|ref|ZP_07916435.1| conserved hypothetical protein [Bacteroides sp. D2] gi|156111456|gb|EDO13201.1| hypothetical protein BACOVA_01200 [Bacteroides ovatus ATCC 8483] gi|229451566|gb|EEO57357.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|292632758|gb|EFF51351.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides ovatus SD CMC 3f] gi|298513021|gb|EFI36908.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 3_1_23] gi|313694070|gb|EFS30905.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 187 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 68/150 (45%), Gaps = 15/150 (10%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 ++KAC+ ++ G I PT+TV+G+ D+ N A+RR+YEIKKR ++ +V Sbjct: 5 IKKACQVMNEGGVILYPTDTVWGIGCDATNEEAVRRVYEIKKRADSKAMLV------LVD 58 Query: 72 KHASVDPLSLHLAKLFW------PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124 VD + + W PLT++ ++ A + RV F+ Sbjct: 59 SPVKVDFYVQDVPDVAWDLIEVADKPLTIIYS--GARNLASNLLAEDGSVGIRVTNEDFS 116 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHI 154 ++L + + + SAN SGQ N I Sbjct: 117 RRLCQQFRKAIVSTSANVSGQPGAANFSEI 146 >gi|91784220|ref|YP_559426.1| Sua5/YciO/YrdC/YwlC family translation factor [Burkholderia xenovorans LB400] gi|91688174|gb|ABE31374.1| Sua5/YciO/YrdC/YwlC family translation factor [Burkholderia xenovorans LB400] Length = 211 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 4/161 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A + + G +A+PT++ Y LA + A+ RL I+ L V D+S + Sbjct: 17 VKQAVQIIKDGGVVALPTDSSYALACHLDDKDAVERLRRIRGLDEKQLLSLLVRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129 A VD L K PGP VL +T ++ LS + KT RVP T ++E Sbjct: 77 NFAMVDNRQYRLIKSVTPGPYVFVLQ--ATKEVPRRLSHPSRKTIGLRVPDHAITLAILE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 G PL + G+ N + + + K++ L+IDGG Sbjct: 135 ELGQPLLGSTLIMPGETQPLNDPEEIRARLEKQLDLVIDGG 175 >gi|320666395|gb|EFX33378.1| tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein [Escherichia coli O157:H7 str. LSU-61] Length = 190 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/140 (32%), Positives = 66/140 (47%), Gaps = 6/140 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +A+ A + L+ IA PTE V+G+ D + TA+ RL E+K+RP LI ++ Sbjct: 7 GDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYE 66 Query: 69 MVKKHASVDPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 +K + L+ + +F WPGP+T V +TT T + RV Sbjct: 67 QLKPYIDDTMLTDVQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLV 124 Query: 125 KKLIETYGHPLAIPSANRSG 144 L + YG PL SAN SG Sbjct: 125 VALCQAYGKPLVSTSANLSG 144 >gi|302554166|ref|ZP_07306508.1| yrdC domain-containing protein [Streptomyces viridochromogenes DSM 40736] gi|302471784|gb|EFL34877.1| yrdC domain-containing protein [Streptomyces viridochromogenes DSM 40736] Length = 215 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 58/210 (27%), Positives = 92/210 (43%), Gaps = 29/210 (13%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR------PAM----NP 59 LR+A + G + +PT+TVYG+ D+ A+ L E K R P + N Sbjct: 15 TGLREAASAVRRGELVVLPTDTVYGIGADAFASEAVGDLLEAKGRGRNMPSPVLIGSPNT 74 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 L V+D S L+ L FWPG LTLV + T T R+ Sbjct: 75 LHGLVTDFSE---------LAWELVDAFWPGALTLVAKHQPSLQWDLGDTRG--TVAVRM 123 Query: 120 PCGFTKKLIETYGHPLAIPSANRSGQISITN---VKHILSSSICKEIPLIIDGGISKIGL 176 P + T P+A+ SAN +G + + + +L S+ + +DGG + + Sbjct: 124 PLHPVAIELLTEVGPMAVSSANLTGHPAPEDCDAAQEMLGDSVS----VYLDGGPTPGNV 179 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAI 206 S+IV+V E R+LR G + + L++ + Sbjct: 180 PSSIVDVTQEVP-RLLRAGAISADELRKVV 208 >gi|291515798|emb|CBK65008.1| translation factor SUA5 [Alistipes shahii WAL 8301] Length = 200 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/191 (25%), Positives = 86/191 (45%), Gaps = 7/191 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++ + L+ I PT++VY R+P AI RL I+ + + +I+ V Sbjct: 15 LQRVVDALERDEIIIYPTDSVYAFGCSLRSPKAIERLRRIRGK-SEEKFTVVFENIAQVA 73 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 ++ VD + K PGP T V L ++ I + +T R+P + ++ Sbjct: 74 EYCRVDNAVFRILKRNLPGPFTFV--LAASARIPDKALERRRTIGVRIPASPVARAVVGA 131 Query: 131 YGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G P+ S Q + T ++ +E+ L+IDGGI + +T+V++ + Sbjct: 132 LGCPMITTSVKDDDQVVEYTTDPELIHERYGREVALVIDGGIGD-NVPTTVVDLTGDGP- 189 Query: 190 RILRPGGLEIE 200 ILR G E++ Sbjct: 190 EILREGKGELQ 200 >gi|15803810|ref|NP_289844.1| putative ribosome maturation factor [Escherichia coli O157:H7 EDL933] gi|15833402|ref|NP_312175.1| ribosome maturation factor [Escherichia coli O157:H7 str. Sakai] gi|168752269|ref|ZP_02777291.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4113] gi|168758510|ref|ZP_02783517.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4401] gi|168769144|ref|ZP_02794151.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4486] gi|168777860|ref|ZP_02802867.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4196] gi|168783849|ref|ZP_02808856.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4076] gi|168786172|ref|ZP_02811179.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC869] gi|168802908|ref|ZP_02827915.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC508] gi|195939830|ref|ZP_03085212.1| putative ribosome maturation factor [Escherichia coli O157:H7 str. EC4024] gi|208805660|ref|ZP_03247997.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4206] gi|208813608|ref|ZP_03254937.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4045] gi|208819808|ref|ZP_03260128.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4042] gi|209396523|ref|YP_002272739.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4115] gi|217325662|ref|ZP_03441746.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. TW14588] gi|254795219|ref|YP_003080056.1| putative ribosome maturation factor [Escherichia coli O157:H7 str. TW14359] gi|261224587|ref|ZP_05938868.1| predicted ribosome maturation factor [Escherichia coli O157:H7 str. FRIK2000] gi|261254519|ref|ZP_05947052.1| predicted ribosome maturation factor [Escherichia coli O157:H7 str. FRIK966] gi|81765049|sp|Q8X8F8|RIMN_ECO57 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|12517909|gb|AAG58404.1|AE005555_4 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] gi|13363621|dbj|BAB37571.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|187767015|gb|EDU30859.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4196] gi|188013856|gb|EDU51978.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4113] gi|188998860|gb|EDU67846.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4076] gi|189354694|gb|EDU73113.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4401] gi|189361748|gb|EDU80167.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4486] gi|189374185|gb|EDU92601.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC869] gi|189375257|gb|EDU93673.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC508] gi|208725461|gb|EDZ75062.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4206] gi|208734885|gb|EDZ83572.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4045] gi|208739931|gb|EDZ87613.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4042] gi|209157923|gb|ACI35356.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4115] gi|209757398|gb|ACI77011.1| hypothetical protein ECs4148 [Escherichia coli] gi|209757400|gb|ACI77012.1| hypothetical protein ECs4148 [Escherichia coli] gi|209757402|gb|ACI77013.1| hypothetical protein ECs4148 [Escherichia coli] gi|209757404|gb|ACI77014.1| hypothetical protein ECs4148 [Escherichia coli] gi|209757406|gb|ACI77015.1| hypothetical protein ECs4148 [Escherichia coli] gi|217321883|gb|EEC30307.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. TW14588] gi|254594619|gb|ACT73980.1| predicted ribosome maturation factor [Escherichia coli O157:H7 str. TW14359] gi|320191685|gb|EFW66335.1| putative ribosome maturation factor [Escherichia coli O157:H7 str. EC1212] gi|320639587|gb|EFX09181.1| tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein [Escherichia coli O157:H7 str. G5101] gi|320645085|gb|EFX14101.1| tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein [Escherichia coli O157:H- str. 493-89] gi|320650396|gb|EFX18862.1| tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein [Escherichia coli O157:H- str. H 2687] gi|320655921|gb|EFX23841.1| tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661373|gb|EFX28788.1| tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein [Escherichia coli O55:H7 str. USDA 5905] gi|326342531|gb|EGD66305.1| putative ribosome maturation factor [Escherichia coli O157:H7 str. 1044] gi|326344518|gb|EGD68267.1| putative ribosome maturation factor [Escherichia coli O157:H7 str. 1125] Length = 190 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/140 (32%), Positives = 66/140 (47%), Gaps = 6/140 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +A+ A + L+ IA PTE V+G+ D + TA+ RL E+K+RP LI ++ Sbjct: 7 GDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYE 66 Query: 69 MVKKHASVDPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 +K + L+ + +F WPGP+T V +TT T + RV Sbjct: 67 QLKPYIDDTMLTDVQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLV 124 Query: 125 KKLIETYGHPLAIPSANRSG 144 L + YG PL SAN SG Sbjct: 125 VALCQAYGKPLVSTSANLSG 144 >gi|220904022|ref|YP_002479334.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868321|gb|ACL48656.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 223 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 1/85 (1%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++A L G + PTET YGL + + A+ R+Y+ K+RP PL + V+ Sbjct: 10 LQEAVACLRGGHALIFPTETFYGLGCLASDAAAVSRIYQFKRRPVHKPLPLLAASEGQVR 69 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVL 96 A ++ + L + FWPGPLT++L Sbjct: 70 SVAQLEAMPEPL-RAFWPGPLTVLL 93 >gi|291284641|ref|YP_003501459.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O55:H7 str. CB9615] gi|290764514|gb|ADD58475.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O55:H7 str. CB9615] Length = 205 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/140 (32%), Positives = 66/140 (47%), Gaps = 6/140 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +A+ A + L+ IA PTE V+G+ D + TA+ RL E+K+RP LI ++ Sbjct: 22 GDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYE 81 Query: 69 MVKKHASVDPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124 +K + L+ + +F WPGP+T V +TT T + RV Sbjct: 82 QLKPYIDDTMLTDVQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLV 139 Query: 125 KKLIETYGHPLAIPSANRSG 144 L + YG PL SAN SG Sbjct: 140 VALCQAYGKPLVSTSANLSG 159 >gi|74313802|ref|YP_312221.1| putative ribosome maturation factor [Shigella sonnei Ss046] gi|170683354|ref|YP_001745545.1| putative ribosome maturation factor [Escherichia coli SMS-3-5] gi|191169298|ref|ZP_03031047.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli B7A] gi|191174443|ref|ZP_03035944.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli F11] gi|193066486|ref|ZP_03047530.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli E22] gi|193071546|ref|ZP_03052455.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli E110019] gi|209920748|ref|YP_002294832.1| putative ribosome maturation factor [Escherichia coli SE11] gi|218555840|ref|YP_002388753.1| putative ribosome maturation factor [Escherichia coli IAI1] gi|218560344|ref|YP_002393257.1| ribosome maturation factor [Escherichia coli S88] gi|218696975|ref|YP_002404642.1| putative ribosome maturation factor [Escherichia coli 55989] gi|256020641|ref|ZP_05434506.1| putative ribosome maturation factor [Shigella sp. D9] gi|260846080|ref|YP_003223858.1| putative ribosome maturation factor [Escherichia coli O103:H2 str. 12009] gi|260857403|ref|YP_003231294.1| putative ribosome maturation factor [Escherichia coli O26:H11 str. 11368] gi|260870026|ref|YP_003236428.1| putative ribosome maturation factor [Escherichia coli O111:H- str. 11128] gi|300822914|ref|ZP_07103050.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 119-7] gi|300903531|ref|ZP_07121453.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 84-1] gi|300918257|ref|ZP_07134861.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 115-1] gi|300935280|ref|ZP_07150291.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 21-1] gi|300973962|ref|ZP_07172369.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 200-1] gi|301305492|ref|ZP_07211584.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 124-1] gi|306816375|ref|ZP_07450513.1| putative ribosome maturation factor [Escherichia coli NC101] gi|307315139|ref|ZP_07594722.1| SUA5/yciO/yrdC domain protein [Escherichia coli W] gi|309794558|ref|ZP_07688980.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 145-7] gi|331659573|ref|ZP_08360511.1| protein YrdC [Escherichia coli TA206] gi|331670112|ref|ZP_08370951.1| protein YrdC [Escherichia coli TA271] gi|331684925|ref|ZP_08385511.1| protein YrdC [Escherichia coli H299] gi|123616010|sp|Q3YWX6|RIMN_SHISS RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|212277679|sp|B1LGN9|RIMN_ECOSM RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|212277720|sp|Q1R650|RIMN_ECOUT RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|212277723|sp|Q0TCH9|RIMN_ECOL5 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|212277725|sp|A7ZSH1|RIMN_ECO24 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|212277737|sp|A1AGH4|RIMN_ECOK1 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|212288264|sp|B2U2Q0|RIMN_SHIB3 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|73857279|gb|AAZ89986.1| conserved hypothetical protein [Shigella sonnei Ss046] gi|170521072|gb|ACB19250.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli SMS-3-5] gi|190900653|gb|EDV60453.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli B7A] gi|190905251|gb|EDV64889.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli F11] gi|192925867|gb|EDV80517.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli E22] gi|192955134|gb|EDV85628.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli E110019] gi|209914007|dbj|BAG79081.1| conserved hypothetical protein [Escherichia coli SE11] gi|218353707|emb|CAU99974.1| putative ribosome maturation factor [Escherichia coli 55989] gi|218362608|emb|CAR00234.1| putative ribosome maturation factor [Escherichia coli IAI1] gi|218367113|emb|CAR04887.1| putative ribosome maturation factor [Escherichia coli S88] gi|222034991|emb|CAP77734.1| Uncharacterized protein yrdC [Escherichia coli LF82] gi|257756052|dbj|BAI27554.1| predicted ribosome maturation factor [Escherichia coli O26:H11 str. 11368] gi|257761227|dbj|BAI32724.1| predicted ribosome maturation factor [Escherichia coli O103:H2 str. 12009] gi|257766382|dbj|BAI37877.1| predicted ribosome maturation factor [Escherichia coli O111:H- str. 11128] gi|300308972|gb|EFJ63492.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 200-1] gi|300404404|gb|EFJ87942.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 84-1] gi|300414518|gb|EFJ97828.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 115-1] gi|300459483|gb|EFK22976.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 21-1] gi|300524680|gb|EFK45749.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 119-7] gi|300839187|gb|EFK66947.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 124-1] gi|305850771|gb|EFM51228.1| putative ribosome maturation factor [Escherichia coli NC101] gi|306905488|gb|EFN36023.1| SUA5/yciO/yrdC domain protein [Escherichia coli W] gi|307628317|gb|ADN72621.1| putative ribosome maturation factor [Escherichia coli UM146] gi|308121608|gb|EFO58870.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 145-7] gi|312947833|gb|ADR28660.1| putative ribosome maturation factor [Escherichia coli O83:H1 str. NRG 857C] gi|315062574|gb|ADT76901.1| predicted ribosome maturation factor [Escherichia coli W] gi|315255866|gb|EFU35834.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 85-1] gi|315284583|gb|EFU44028.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 110-3] gi|315297148|gb|EFU56428.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 16-3] gi|320173927|gb|EFW49103.1| putative ribosome maturation factor [Shigella dysenteriae CDC 74-1112] gi|320199470|gb|EFW74060.1| putative ribosome maturation factor [Escherichia coli EC4100B] gi|323154120|gb|EFZ40323.1| ribosome maturation factor [Escherichia coli EPECa14] gi|323162961|gb|EFZ48796.1| ribosome maturation factor [Escherichia coli E128010] gi|323179182|gb|EFZ64756.1| ribosome maturation factor [Escherichia coli 1180] gi|323182762|gb|EFZ68163.1| ribosome maturation factor [Escherichia coli 1357] gi|323376839|gb|ADX49107.1| SUA5/yciO/yrdC domain protein [Escherichia coli KO11] gi|323944297|gb|EGB40373.1| yrdC domain-containing protein [Escherichia coli H120] gi|323950196|gb|EGB46078.1| yrdC domain-containing protein [Escherichia coli H252] gi|323954595|gb|EGB50378.1| yrdC domain-containing protein [Escherichia coli H263] gi|324014959|gb|EGB84178.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 60-1] gi|324017405|gb|EGB86624.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 117-3] gi|324116328|gb|EGC10248.1| yrdC domain-containing protein [Escherichia coli E1167] gi|331052788|gb|EGI24821.1| protein YrdC [Escherichia coli TA206] gi|331062174|gb|EGI34094.1| protein YrdC [Escherichia coli TA271] gi|331077296|gb|EGI48508.1| protein YrdC [Escherichia coli H299] Length = 190 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 68/142 (47%), Gaps = 10/142 (7%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +A+ A + L+ IA PTE V+G+ D + TA+ RL E+K+RP LI ++ Sbjct: 7 GDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYE 66 Query: 69 MVKKHASVDPLSLHLAK---LF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 +K + +D L A+ +F WPGP+T V +TT T + RV Sbjct: 67 QLKPY--IDDTMLTDAQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHP 122 Query: 123 FTKKLIETYGHPLAIPSANRSG 144 L + YG PL SAN SG Sbjct: 123 LVVALCQAYGKPLVSTSANLSG 144 >gi|304405647|ref|ZP_07387306.1| SUA5/yciO/yrdC domain protein [Paenibacillus curdlanolyticus YK9] gi|304345686|gb|EFM11521.1| SUA5/yciO/yrdC domain protein [Paenibacillus curdlanolyticus YK9] Length = 216 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 55/197 (27%), Positives = 86/197 (43%), Gaps = 8/197 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 RKA E + G + P++T L ++ AI R + IK RPA + L + K Sbjct: 15 FRKAAECVVNGGIVIAPSDTNLALTLNPWKDDAIERAFAIKNRPATSALTLFFLEPGEWK 74 Query: 72 KHA-SVDP-LSLHLAKLFWPGPLTLVL-DLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128 +A + DP L A FWPGPL ++L S +D + + C P + ++ Sbjct: 75 DYAEAADPGLVQAFADAFWPGPLNIILPKKPSISDRMVCGGSTVALGCLSNPV--WRGMM 132 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILS-SSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + P+A+ SAN SGQ V L+ + + I+ G STI+++ Sbjct: 133 KYTNMPVAMTSANLSGQADGVLVDLDLALRQVGGNVDYILKGEAQGTTKSSTIIDLTGTP 192 Query: 188 KVRILRPGGLEIETLKR 204 RI R G + E L + Sbjct: 193 --RITRYGDVTREQLNQ 207 >gi|330720127|gb|EGG98531.1| Sua5 YciO YrdC YwlC family protein [gamma proteobacterium IMCC2047] Length = 182 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/181 (27%), Positives = 78/181 (43%), Gaps = 6/181 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L A L G +A PTE V+GL D N A+R+L +K+RP LI + I + Sbjct: 6 LHNAVVALRNGELVAYPTEAVWGLGCDPMNEAAVRKLLNLKRRPVEKGLILVAASIKQFE 65 Query: 72 KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + S L H + WPG T V+ + T T + RV +KL + Sbjct: 66 PYLSTINLEQRHQLEASWPGFQTWVVPVPDTVPY--WLTGQHSSIALRVSTHPLIQKLCQ 123 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 + PL SAN +G + + + + S + I+ G + S+I+++ K + Sbjct: 124 AFAGPLVSTSANPAGHLPALSAEEV--HSYFDDQAFIVPGELGGADAPSSIIDLVTGKSL 181 Query: 190 R 190 R Sbjct: 182 R 182 >gi|26249867|ref|NP_755907.1| putative ribosome maturation factor [Escherichia coli CFT073] gi|26110295|gb|AAN82481.1|AE016767_241 Protein yrdC [Escherichia coli CFT073] gi|307555370|gb|ADN48145.1| Sua5/YciO/YrdC family protein [Escherichia coli ABU 83972] Length = 205 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 68/142 (47%), Gaps = 10/142 (7%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +A+ A + L+ IA PTE V+G+ D + TA+ RL E+K+RP LI ++ Sbjct: 22 GDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKRRPVDKGLILIAANYE 81 Query: 69 MVKKHASVDPLSLHLAK---LF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-G 122 +K + +D L A+ +F WPGP+T V +TT T + RV Sbjct: 82 QLKPY--IDDTMLTDAQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHP 137 Query: 123 FTKKLIETYGHPLAIPSANRSG 144 L + YG PL SAN SG Sbjct: 138 LVVALCQAYGKPLVSTSANLSG 159 >gi|254167519|ref|ZP_04874371.1| Sua5/YciO/YrdC/YwlC family protein [Aciduliprofundum boonei T469] gi|197623782|gb|EDY36345.1| Sua5/YciO/YrdC/YwlC family protein [Aciduliprofundum boonei T469] Length = 180 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 53/185 (28%), Positives = 90/185 (48%), Gaps = 18/185 (9%) Query: 24 PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHL 83 P+ +PT+T+YGL + I ++Y+IK R + V++I M+ K A + P + L Sbjct: 12 PVVMPTDTLYGLCMSIDG--DINKIYKIKGRSVEKKIPVGVANIEMMGKIAEITPEAEKL 69 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANR 142 + F PGPLTLV L I L T R+P T L+E G P+ + SAN Sbjct: 70 IRAFMPGPLTLV---LRNKGIKWLG----DTVAVRIPAHTLTIYLMEKIG-PITLTSANI 121 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202 SG+ ++ ++ ++ +D G +G STI+ + V ++R G + + ++ Sbjct: 122 SGE----KAPSVIEDTMKLDVKYRLDCG-RLMGKPSTIIKLI--DGVELIREGAIPMASI 174 Query: 203 KRAIS 207 R + Sbjct: 175 MRVLE 179 >gi|329939828|ref|ZP_08289129.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces griseoaurantiacus M045] gi|329301398|gb|EGG45293.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces griseoaurantiacus M045] Length = 215 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 59/212 (27%), Positives = 96/212 (45%), Gaps = 31/212 (14%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR------PAM----N 58 + LR+A + G + +PT+TVYG+ D+ + A+ L E K R P + N Sbjct: 14 ATGLREAAAAVRRGELVVLPTDTVYGIGADAFSAEAVGDLLEAKGRGRNMPTPVLIGSPN 73 Query: 59 PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 L V+D S ++ L FWPG LTLV + T T R Sbjct: 74 TLHGLVTDFSE---------MAWELVDAFWPGALTLVAKHQPSLQWDLGETRG--TVAVR 122 Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITN---VKHILSSSICKEIPLIIDGGISKI 174 +P +L+ +G P+A+ SAN +G + + + +L S+ + +DGG + Sbjct: 123 MPLHPVAIELLTEFG-PMAVSSANLTGHPAPEDCDAAQEMLGDSVS----VYLDGGPTPG 177 Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAI 206 + S+IV+V V +LR G L E L++ + Sbjct: 178 NVPSSIVDVTGRVPV-LLRQGALSPEELRKVV 208 >gi|255532909|ref|YP_003093281.1| Sua5/YciO/YrdC/YwlC family protein [Pedobacter heparinus DSM 2366] gi|255345893|gb|ACU05219.1| Sua5/YciO/YrdC/YwlC family protein [Pedobacter heparinus DSM 2366] Length = 206 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 54/201 (26%), Positives = 90/201 (44%), Gaps = 18/201 (8%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIR---RLYEIKKRPAMNPLIC----H 63 A+ + + L G I PT+TVYGL D N AI RL IK A IC H Sbjct: 14 AIEQIVDVLKKGGLIIYPTDTVYGLGCDITNQKAIEKICRLRGIKPEKANFSFICSDLRH 73 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 +SD +K +D + + K PGP T +L+ + ++ L ++N KT RVP Sbjct: 74 ISD--FIK---PIDTATFRVLKKALPGPFTFILN--ANNNVPKLLSSNKKTVGIRVPDND 126 Query: 123 FTKKLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 ++++ G+P+ S + I + ++ + ++IDGG ST+V Sbjct: 127 IAREIVRQLGNPILSTSIRDDDEVIEYSTDPELIHEKYENTVDMVIDGGFGD-NEASTVV 185 Query: 182 NVQCEKKVRILRPGGLEIETL 202 + I+R G ++++ Sbjct: 186 DC-TSGDFEIIREGKGDLDSF 205 >gi|289664817|ref|ZP_06486398.1| Sua5/YciO/YrdC family protein [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 187 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/184 (26%), Positives = 77/184 (41%), Gaps = 9/184 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L A L G IA PTE V+GL D R A+ RL EIK+RP +I + +++ Sbjct: 7 LDNAVATLTQGGVIAYPTEAVWGLGCDPRQEAAVMRLLEIKRRPVDKGVIVVAPSVDVLR 66 Query: 72 KHASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCG-FTKK 126 +D P WPGP T + L T+ P T R+ Sbjct: 67 DWVDIDALEPARRQDVLASWPGPHTWI---LPVTERAPRWVTGEHDGLAVRISAHPVVAA 123 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L +G PL SAN +G+ + + L ++ I ++DG + + + I + + Sbjct: 124 LCAAWGAPLVSTSANLAGEPPARS-RAALDPALLATIDGVVDGEVGTLAQPTQIRDARSG 182 Query: 187 KKVR 190 + +R Sbjct: 183 QILR 186 >gi|218261693|ref|ZP_03476428.1| hypothetical protein PRABACTJOHN_02096 [Parabacteroides johnsonii DSM 18315] gi|218223857|gb|EEC96507.1| hypothetical protein PRABACTJOHN_02096 [Parabacteroides johnsonii DSM 18315] Length = 186 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 18/164 (10%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 ++KACE + AG I PT+T++G+ D+ N A++++YE+KKR ++ + + Sbjct: 5 IQKACEIMQAGGIILYPTDTIWGIGCDATNEKAVQKVYELKKRMDNKAMLVLTDSSAKLS 64 Query: 72 KHASVDP-LSLHLAK-------LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 + S P ++ L + + +P L +LL + N + F Sbjct: 65 MYVSDMPDIAWDLIEVADKPLTIIYPHAKNLANNLLGEDGSVGIRVTNEE---------F 115 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 ++KL E + PL SAN SG+ S N + S SI + I+ Sbjct: 116 SRKLCERFRRPLVSTSANVSGEPSPGNFSEV-SDSIKNGVDYIV 158 >gi|30064604|ref|NP_838775.1| putative ribosome maturation factor [Shigella flexneri 2a str. 2457T] gi|212288262|sp|Q0T019|RIMN_SHIF8 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|30042863|gb|AAP18586.1| hypothetical protein S3538 [Shigella flexneri 2a str. 2457T] gi|313648795|gb|EFS13235.1| ribosome maturation factor [Shigella flexneri 2a str. 2457T] gi|332754003|gb|EGJ84376.1| ribosome maturation factor [Shigella flexneri 2747-71] gi|332766533|gb|EGJ96740.1| protein involved in synthesis of threonylcarbamoyladenosine-modified tRNA [Shigella flexneri 2930-71] gi|332998296|gb|EGK17897.1| ribosome maturation factor [Shigella flexneri VA-6] gi|333012315|gb|EGK31696.1| ribosome maturation factor [Shigella flexneri K-304] gi|333014510|gb|EGK33858.1| ribosome maturation factor [Shigella flexneri K-227] Length = 190 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/140 (32%), Positives = 66/140 (47%), Gaps = 6/140 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +A+ A + L+ IA PTE V+G+ D + TA+ RL E+K+RP LI ++ Sbjct: 7 GDAIAAAIDVLNEKRVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYE 66 Query: 69 MVKKHASVDPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 +K + L+ + +F WPGP+T V +TT T + RV Sbjct: 67 QLKPYIDDTMLTDVQRETIFSCWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLV 124 Query: 125 KKLIETYGHPLAIPSANRSG 144 L + YG PL SAN SG Sbjct: 125 VALCQAYGKPLVSTSANLSG 144 >gi|29655286|ref|NP_820978.1| sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii RSA 493] gi|153206968|ref|ZP_01945786.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii 'MSU Goat Q177'] gi|165918271|ref|ZP_02218357.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii RSA 334] gi|212219510|ref|YP_002306297.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii CbuK_Q154] gi|81628337|sp|Q83AA2|RIMN_COXBU RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|29542558|gb|AAO91492.1| sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii RSA 493] gi|120577041|gb|EAX33665.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii 'MSU Goat Q177'] gi|165918131|gb|EDR36735.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii RSA 334] gi|212013772|gb|ACJ21152.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii CbuK_Q154] Length = 186 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 53/165 (32%), Positives = 76/165 (46%), Gaps = 9/165 (5%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ A + L G IA PTE VYGL D N A+ +L IKKR I S+ Sbjct: 5 TQSINDAVKCLRQGGVIAYPTEAVYGLGCDPFNHDAVAQLLTIKKRSIKKGFILIASEWK 64 Query: 69 MVKKHAS-VDPLSLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 V+ +DP + LA++F WPGP T ++ + T T RV Sbjct: 65 QVEPLTEPIDPKA--LARVFDTWPGPFTWTFP--ASKEAPHWITGQHSTIAIRVTAHPLA 120 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169 K L + + PL SAN+ G+ I +VK IL +I I++G Sbjct: 121 KLLCQRFAGPLISSSANQEGEPPIRDVK-ILRLVFGNKIDKILEG 164 >gi|300815507|ref|ZP_07095732.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 107-1] gi|300532399|gb|EFK53461.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 107-1] gi|323164847|gb|EFZ50638.1| ribosome maturation factor [Shigella sonnei 53G] gi|323173920|gb|EFZ59548.1| ribosome maturation factor [Escherichia coli LT-68] Length = 172 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 68/142 (47%), Gaps = 10/142 (7%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +A+ A + L+ IA PTE V+G+ D + TA+ RL E+K+RP LI ++ Sbjct: 7 GDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYE 66 Query: 69 MVKKHASVDPLSLHLAK---LF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-G 122 +K + +D L A+ +F WPGP+T V +TT T + RV Sbjct: 67 QLKPY--IDDTMLTDAQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHP 122 Query: 123 FTKKLIETYGHPLAIPSANRSG 144 L + YG PL SAN SG Sbjct: 123 LVVALCQAYGKPLVSTSANLSG 144 >gi|300781420|ref|ZP_07091274.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium genitalium ATCC 33030] gi|300533127|gb|EFK54188.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium genitalium ATCC 33030] Length = 221 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/197 (25%), Positives = 95/197 (48%), Gaps = 15/197 (7%) Query: 21 AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPL 79 AG + IPT+TVYG+ D+ NP A +L K+R P+ V + ++ Sbjct: 27 AGQCVVIPTDTVYGIGADAFNPDACAKLLATKRRGPDMPVPVLVGSWTTIQGLVREFTDT 86 Query: 80 SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK-TACFRVPCG-FTKKLIETYGHPLAI 137 + L + FWPG L++V+ + P + + + T R+P +L+ G P+A+ Sbjct: 87 AKTLVEAFWPGGLSIVVPEAPSL---PWNLGDTRGTVLLRMPLQPVAIELLRETG-PMAV 142 Query: 138 PSANRSGQ---ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194 SAN SG+ ++ ++ ++ + +DGG +++G STI+++ + ILR Sbjct: 143 SSANISGEAPPVTALGARNQFGEAVQ----VYLDGGKAEVGEPSTIIDISGPSPI-ILRE 197 Query: 195 GGLEIETLKRAISVELE 211 G + E + + + E Sbjct: 198 GAISPERIGGVLGMTPE 214 >gi|218550558|ref|YP_002384349.1| ribosome maturation factor [Escherichia fergusonii ATCC 35469] gi|218358099|emb|CAQ90746.1| putative ribosome maturation factor [Escherichia fergusonii ATCC 35469] gi|323966244|gb|EGB61679.1| yrdC domain-containing protein [Escherichia coli M863] gi|323974765|gb|EGB69878.1| yrdC domain-containing protein [Escherichia coli TW10509] gi|324111961|gb|EGC05940.1| yrdC domain-containing protein [Escherichia fergusonii B253] gi|325498851|gb|EGC96710.1| ribosome maturation factor [Escherichia fergusonii ECD227] gi|327250931|gb|EGE62624.1| ribosome maturation factor [Escherichia coli STEC_7v] Length = 190 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 68/142 (47%), Gaps = 10/142 (7%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +A+ A + L+ IA PTE V+G+ D + TA+ RL E+K+RP LI ++ Sbjct: 7 GDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYE 66 Query: 69 MVKKHASVDPLSLHLAK---LF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 +K + +D L A+ +F WPGP+T V +TT T + RV Sbjct: 67 QLKPY--IDDCMLTDAQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHP 122 Query: 123 FTKKLIETYGHPLAIPSANRSG 144 L + YG PL SAN SG Sbjct: 123 LVVALCQAYGKPLVSTSANLSG 144 >gi|56480306|ref|NP_709070.2| putative ribosome maturation factor [Shigella flexneri 2a str. 301] gi|81722931|sp|Q83JD1|RIMN_SHIFL RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|56383857|gb|AAN44777.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] Length = 190 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/140 (32%), Positives = 66/140 (47%), Gaps = 6/140 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +A+ A + L+ IA PTE V+G+ D + TA+ RL E+K+RP LI ++ Sbjct: 7 GDAIAAAIDVLNEKRVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYE 66 Query: 69 MVKKHASVDPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 +K + L+ + +F WPGP+T V +TT T + RV Sbjct: 67 QLKPYIDDTMLTDVQRETIFSCWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLV 124 Query: 125 KKLIETYGHPLAIPSANRSG 144 L + YG PL SAN SG Sbjct: 125 VALCQAYGKPLVSTSANLSG 144 >gi|16131163|ref|NP_417741.1| tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein [Escherichia coli str. K-12 substr. MG1655] gi|89110728|ref|AP_004508.1| dsRNA-binding protein [Escherichia coli str. K-12 substr. W3110] gi|170018482|ref|YP_001723436.1| putative ribosome maturation factor [Escherichia coli ATCC 8739] gi|170082803|ref|YP_001732123.1| ribosome maturation factor [Escherichia coli str. K-12 substr. DH10B] gi|194440014|ref|ZP_03072072.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli 101-1] gi|238902373|ref|YP_002928169.1| putative ribosome maturation factor [Escherichia coli BW2952] gi|253771894|ref|YP_003034725.1| ribosome maturation factor [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254163210|ref|YP_003046318.1| putative ribosome maturation factor [Escherichia coli B str. REL606] gi|256025990|ref|ZP_05439855.1| putative ribosome maturation factor [Escherichia sp. 4_1_40B] gi|297517900|ref|ZP_06936286.1| putative ribosome maturation factor [Escherichia coli OP50] gi|300932175|ref|ZP_07147455.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 187-1] gi|300946504|ref|ZP_07160770.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 116-1] gi|300955320|ref|ZP_07167702.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 175-1] gi|301021208|ref|ZP_07185242.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 196-1] gi|301643898|ref|ZP_07243928.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 146-1] gi|307139965|ref|ZP_07499321.1| putative ribosome maturation factor [Escherichia coli H736] gi|312972455|ref|ZP_07786629.1| ribosome maturation factor [Escherichia coli 1827-70] gi|2851671|sp|P45748|RIMN_ECOLI RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=Ribosome maturation factor RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|212277674|sp|B1X6D5|RIMN_ECODH RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|212277678|sp|B1IQ17|RIMN_ECOLC RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|212277722|sp|A8A587|RIMN_ECOHS RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|2367210|gb|AAC76307.1| tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein [Escherichia coli str. K-12 substr. MG1655] gi|85676759|dbj|BAE78009.1| dsRNA-binding protein [Escherichia coli str. K12 substr. W3110] gi|169753410|gb|ACA76109.1| SUA5/yciO/yrdC domain [Escherichia coli ATCC 8739] gi|169890638|gb|ACB04345.1| predicted ribosome maturation factor [Escherichia coli str. K-12 substr. DH10B] gi|194421066|gb|EDX37095.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli 101-1] gi|238863080|gb|ACR65078.1| predicted ribosome maturation factor [Escherichia coli BW2952] gi|242378809|emb|CAQ33601.1| protein involved in synthesis of threonylcarbamoyladenosine-modified tRNA [Escherichia coli BL21(DE3)] gi|253322938|gb|ACT27540.1| SUA5/yciO/yrdC domain protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975111|gb|ACT40782.1| predicted ribosome maturation factor [Escherichia coli B str. REL606] gi|253979267|gb|ACT44937.1| predicted ribosome maturation factor [Escherichia coli BL21(DE3)] gi|260447699|gb|ACX38121.1| SUA5/yciO/yrdC domain protein [Escherichia coli DH1] gi|299881616|gb|EFI89827.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 196-1] gi|300317764|gb|EFJ67548.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 175-1] gi|300453810|gb|EFK17430.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 116-1] gi|300460059|gb|EFK23552.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 187-1] gi|301077741|gb|EFK92547.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 146-1] gi|309703694|emb|CBJ03035.1| conserved hypothetical protein [Escherichia coli ETEC H10407] gi|310334832|gb|EFQ01037.1| ribosome maturation factor [Escherichia coli 1827-70] gi|315137858|dbj|BAJ45017.1| dsRNA-binding protein [Escherichia coli DH1] gi|315617086|gb|EFU97696.1| ribosome maturation factor [Escherichia coli 3431] gi|323934519|gb|EGB30927.1| yrdC domain-containing protein [Escherichia coli E1520] gi|323939296|gb|EGB35508.1| yrdC domain-containing protein [Escherichia coli E482] gi|323959567|gb|EGB55220.1| yrdC domain-containing protein [Escherichia coli H489] gi|323970086|gb|EGB65360.1| yrdC domain-containing protein [Escherichia coli TA007] gi|332345230|gb|AEE58564.1| ribosome maturation factor protein [Escherichia coli UMNK88] Length = 190 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/139 (32%), Positives = 66/139 (47%), Gaps = 6/139 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +A+ A + L+ IA PTE V+G+ D + TA+ RL E+K+RP LI ++ Sbjct: 8 DAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQ 67 Query: 70 VKKHASVDPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 +K + L+ + +F WPGP+T V +TT T + RV Sbjct: 68 LKPYIDDTMLTDVQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVV 125 Query: 126 KLIETYGHPLAIPSANRSG 144 L + YG PL SAN SG Sbjct: 126 ALCQAYGKPLVSTSANLSG 144 >gi|187928076|ref|YP_001898563.1| Sua5/YciO/YrdC/YwlC family protein [Ralstonia pickettii 12J] gi|187724966|gb|ACD26131.1| Sua5/YciO/YrdC/YwlC family protein [Ralstonia pickettii 12J] Length = 207 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 77/173 (44%), Gaps = 5/173 (2%) Query: 1 MQIMSITDSNAL-RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 QI T L R+A E + AG +A+PT++ Y LA + +A+ RL ++ + Sbjct: 5 FQIHPTTPQGRLIRQAAEIIRAGGLVALPTDSCYALACHLDDKSAVERLRRVRGIDEKHH 64 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFR 118 L D+S + A VD + K PGP +L+ +T ++ LS + KT R Sbjct: 65 LTLMCRDLSELATFARVDNKQYRVLKAATPGPFVFLLE--ATKEVPRRLSHPSRKTIGLR 122 Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 VP L+ G PL + G N + + K++ L+IDGG Sbjct: 123 VPEHAIPLALMAELGEPLLSATLQLPGDDEPLNEAETIRDRLEKQLELVIDGG 175 >gi|260804891|ref|XP_002597321.1| hypothetical protein BRAFLDRAFT_203325 [Branchiostoma floridae] gi|229282584|gb|EEN53333.1| hypothetical protein BRAFLDRAFT_203325 [Branchiostoma floridae] Length = 382 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 8/155 (5%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +N +++ E + G +PT+TVY L P A+ R Y KK+ P+ +S +S Sbjct: 209 ANGVKQISELMKGGGICGMPTDTVYVLVAACNRPAAVERAYRTKKQAEERPMSIWISQLS 268 Query: 69 MVK-KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANL-----KTACFRVP-C 121 ++ PL K WP ++LV+ D L + ++ R+P C Sbjct: 269 QLEPAREEFGPLLWDFMKEVWPSSISLVIKRGPWLDRFGLGDSARFIGTPESIAIRIPDC 328 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILS 156 LI+ G P+A+ SAN SG+ T+ +L+ Sbjct: 329 TVATHLIDLVG-PIAVTSANPSGEADTTHHSQVLA 362 >gi|157162756|ref|YP_001460074.1| putative ribosome maturation factor [Escherichia coli HS] gi|331643978|ref|ZP_08345107.1| protein YrdC [Escherichia coli H736] gi|157068436|gb|ABV07691.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli HS] gi|331036272|gb|EGI08498.1| protein YrdC [Escherichia coli H736] Length = 205 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/139 (32%), Positives = 66/139 (47%), Gaps = 6/139 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +A+ A + L+ IA PTE V+G+ D + TA+ RL E+K+RP LI ++ Sbjct: 23 DAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQ 82 Query: 70 VKKHASVDPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTK 125 +K + L+ + +F WPGP+T V +TT T + RV Sbjct: 83 LKPYIDDTMLTDVQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVV 140 Query: 126 KLIETYGHPLAIPSANRSG 144 L + YG PL SAN SG Sbjct: 141 ALCQAYGKPLVSTSANLSG 159 >gi|91212709|ref|YP_542695.1| putative ribosome maturation factor [Escherichia coli UTI89] gi|110643521|ref|YP_671251.1| putative ribosome maturation factor [Escherichia coli 536] gi|117625565|ref|YP_858888.1| putative ribosome maturation factor [Escherichia coli APEC O1] gi|157154846|ref|YP_001464750.1| putative ribosome maturation factor [Escherichia coli E24377A] gi|187733572|ref|YP_001881966.1| putative ribosome maturation factor [Shigella boydii CDC 3083-94] gi|188494830|ref|ZP_03002100.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli 53638] gi|237703012|ref|ZP_04533493.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia sp. 3_2_53FAA] gi|293412701|ref|ZP_06655369.1| conserved hypothetical protein [Escherichia coli B354] gi|293453601|ref|ZP_06664020.1| translation factor [Escherichia coli B088] gi|331674791|ref|ZP_08375548.1| protein YrdC [Escherichia coli TA280] gi|331679351|ref|ZP_08380021.1| protein YrdC [Escherichia coli H591] gi|332281837|ref|ZP_08394250.1| Sua5/YciO/YrdC family protein [Shigella sp. D9] gi|91074283|gb|ABE09164.1| protein YrdC [Escherichia coli UTI89] gi|110345113|gb|ABG71350.1| Sua5/YciO/YrdC family protein [Escherichia coli 536] gi|115514689|gb|ABJ02764.1| putative ribosome maturation factor [Escherichia coli APEC O1] gi|157076876|gb|ABV16584.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli E24377A] gi|187430564|gb|ACD09838.1| Sua5/YciO/YrdC/YwlC family protein [Shigella boydii CDC 3083-94] gi|188490029|gb|EDU65132.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli 53638] gi|226902276|gb|EEH88535.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia sp. 3_2_53FAA] gi|291321727|gb|EFE61158.1| translation factor [Escherichia coli B088] gi|291468348|gb|EFF10841.1| conserved hypothetical protein [Escherichia coli B354] gi|294492223|gb|ADE90979.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli IHE3034] gi|331067700|gb|EGI39098.1| protein YrdC [Escherichia coli TA280] gi|331072523|gb|EGI43848.1| protein YrdC [Escherichia coli H591] gi|332104189|gb|EGJ07535.1| Sua5/YciO/YrdC family protein [Shigella sp. D9] Length = 205 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 68/142 (47%), Gaps = 10/142 (7%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +A+ A + L+ IA PTE V+G+ D + TA+ RL E+K+RP LI ++ Sbjct: 22 GDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYE 81 Query: 69 MVKKHASVDPLSLHLAK---LF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 +K + +D L A+ +F WPGP+T V +TT T + RV Sbjct: 82 QLKPY--IDDTMLTDAQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHP 137 Query: 123 FTKKLIETYGHPLAIPSANRSG 144 L + YG PL SAN SG Sbjct: 138 LVVALCQAYGKPLVSTSANLSG 159 >gi|148238861|ref|YP_001224248.1| translation factor [Synechococcus sp. WH 7803] gi|147847400|emb|CAK22951.1| Possible translation factor [Synechococcus sp. WH 7803] Length = 199 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/139 (32%), Positives = 71/139 (51%), Gaps = 13/139 (9%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD---- 66 A+ + ++L G +PT+T+ LA P++ +++ +K+RP PLI ++ Sbjct: 10 AVDQIADYLRGGGAALLPTDTLPALAC---TPSSAAQIWTLKQRPQDKPLILMAAEAVEL 66 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125 + + A +D +L LA+ +WPGPLTLVL H + R+P C T+ Sbjct: 67 LDLTTHIAKLD--ALPLAERYWPGPLTLVLPAAGALVNH--LNPGQDSLGMRIPACAATR 122 Query: 126 KLIETYGHPLAIPSANRSG 144 L+ G PLA SANRSG Sbjct: 123 SLLARSG-PLATTSANRSG 140 >gi|110807131|ref|YP_690651.1| putative ribosome maturation factor [Shigella flexneri 5 str. 8401] gi|110616679|gb|ABF05346.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] gi|281602651|gb|ADA75635.1| putative ribosome maturation factor [Shigella flexneri 2002017] Length = 205 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/140 (32%), Positives = 66/140 (47%), Gaps = 6/140 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +A+ A + L+ IA PTE V+G+ D + TA+ RL E+K+RP LI ++ Sbjct: 22 GDAIAAAIDVLNEKRVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYE 81 Query: 69 MVKKHASVDPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124 +K + L+ + +F WPGP+T V +TT T + RV Sbjct: 82 QLKPYIDDTMLTDVQRETIFSCWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLV 139 Query: 125 KKLIETYGHPLAIPSANRSG 144 L + YG PL SAN SG Sbjct: 140 VALCQAYGKPLVSTSANLSG 159 >gi|237728617|ref|ZP_04559098.1| Sua5/YciO/YrdC/YwlC family protein [Citrobacter sp. 30_2] gi|226909239|gb|EEH95157.1| Sua5/YciO/YrdC/YwlC family protein [Citrobacter sp. 30_2] Length = 190 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/142 (33%), Positives = 67/142 (47%), Gaps = 10/142 (7%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++A+ A L IA PTE V+G+ D + TA+ RL +K+RP LI S+ Sbjct: 7 TDAIAAAIAVLKQEKVIAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIASNFE 66 Query: 69 MVKKHASVDPLSLHLAK---LF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 +K + +D L A+ +F WPGP+T V L+TT T + RV Sbjct: 67 QLKPY--IDDSMLTDAQRDAVFARWPGPVTFVFPALATT--PRWLTGRFDSLAVRVTDHP 122 Query: 123 FTKKLIETYGHPLAIPSANRSG 144 L + YG PL SAN SG Sbjct: 123 LVVALCQAYGKPLVSTSANLSG 144 >gi|127514658|ref|YP_001095855.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella loihica PV-4] gi|212288223|sp|A3QJE8|RIMN_SHELP RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|126639953|gb|ABO25596.1| translation factor SUA5 [Shewanella loihica PV-4] Length = 185 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 52/176 (29%), Positives = 80/176 (45%), Gaps = 19/176 (10%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83 IA PTE VYGL D N AI++L ++K+RP LI SD + + + L+ L Sbjct: 19 IAYPTEAVYGLGCDPDNDEAIQKLLDLKQRPWQKGLILVASDFNQLTPYIDSSVLTEAQL 78 Query: 84 AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRV---PCGFTKKLIETYGHPLAIP 138 F WPGP T ++ + L + + RV P + L + G P+ Sbjct: 79 QSAFDKWPGPFTFIMP--KRPGLSSLLSGQFDSLAVRVSNHPG--VQALCQALGKPIVST 134 Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGIS-KIGLE---STIVNVQCEKKVR 190 SAN +G+ + ++ K IDG ++ +G E STI++V K +R Sbjct: 135 SANLTGEEPALTPEEVIRQFDGK-----IDGLVAGSLGAEPKPSTIIDVISGKILR 185 >gi|238758797|ref|ZP_04619971.1| Ribosomal modification protein RimN [Yersinia aldovae ATCC 35236] gi|238703094|gb|EEP95637.1| Ribosomal modification protein RimN [Yersinia aldovae ATCC 35236] Length = 190 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/127 (34%), Positives = 62/127 (48%), Gaps = 10/127 (7%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 IA PTE V+GL D + A+ L +K+RP LI ++ +K + VD +L A Sbjct: 23 IAYPTEAVFGLGCDPDSEKAVNALLALKQRPWQKGLILIAANYEQLKPY--VDDSALTDA 80 Query: 85 K---LF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIP 138 + +F WPGP+T V+ T + T + + RV +KL YG PL Sbjct: 81 QRETIFSVWPGPVTWVIPASPETPL--WLTGSFDSLAVRVSAHPLVQKLCSQYGKPLVST 138 Query: 139 SANRSGQ 145 SAN SGQ Sbjct: 139 SANLSGQ 145 >gi|224369573|ref|YP_002603737.1| hypothetical protein HRM2_24790 [Desulfobacterium autotrophicum HRM2] gi|223692290|gb|ACN15573.1| conserved hypothetical protein [Desulfobacterium autotrophicum HRM2] Length = 202 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/193 (24%), Positives = 87/193 (45%), Gaps = 6/193 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + L G IA PT+T YG+ D N AI ++Y+IK+R P +D+ + Sbjct: 15 ISQIVDALRQGGIIAYPTDTHYGIGCDIMNKKAIEKVYQIKQRSKNQPFSFICADLKHIS 74 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130 ++A V + K PGP T +L + + + KTA RVP + + Sbjct: 75 EYAKVSTFAYRNMKRLLPGPYTFILQ--GSKLVPKMMLTKRKTAGIRVPDNAIALAIAKE 132 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G+P+ SA + +L + + L++DGG G +S++V++ + Sbjct: 133 LGNPVLSTSATGPDDRPFED-PSLLHDWFGQRLELVVDGGPVP-GTDSSVVSL-IDDVPE 189 Query: 191 ILRPGGLEIETLK 203 I+R G ++ + Sbjct: 190 IIRYGAGDVSLFE 202 >gi|149640125|ref|XP_001515015.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus] Length = 341 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 59/208 (28%), Positives = 94/208 (45%), Gaps = 35/208 (16%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++LR + LD G +PT+TVY LA ++ AI ++Y+IK RP P+ +S++ Sbjct: 129 TSSLRIIAKLLDDGGVCGVPTDTVYALAASCKHSEAIEKIYKIKDRPQDKPICIFISNLD 188 Query: 69 MVK-KHASVDPLSLHLAKLFWPGPLTLV---------------LDLLSTTDIHPLSTANL 112 ++ + PL +PG + + D + T D Sbjct: 189 QLRAANPPFTPLLWDFMARVYPGSIGCIVKKGEWVKKLGVGAGFDRVGTKD--------- 239 Query: 113 KTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171 + RVP L+E G PLAI SAN SG+ T+ + ++S K ++ DG Sbjct: 240 -SIMIRVPDQTVMVHLVEMTG-PLAITSANPSGESDSTHHEMVISRLGHKLEGVLCDGES 297 Query: 172 SKIGLESTIVNVQC----EKKVRILRPG 195 ++ L ST+VN C E + ILR G Sbjct: 298 DEV-LASTVVN--CLRIEEGTITILREG 322 >gi|292489809|ref|YP_003532699.1| hypothetical protein EAMY_3346 [Erwinia amylovora CFBP1430] gi|291555246|emb|CBA23517.1| Uncharacterized protein yrdC [Erwinia amylovora CFBP1430] gi|312173992|emb|CBX82245.1| Uncharacterized protein yrdC [Erwinia amylovora ATCC BAA-2158] Length = 190 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/161 (31%), Positives = 73/161 (45%), Gaps = 7/161 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 ++L + E L IA PTE V+GL D + A+ RL +K+RP LI +D Sbjct: 8 DSLAQCVEQLAQSKVIAYPTEAVFGLGCDPDSEEAVMRLLALKQRPVEKGLILIAADYQQ 67 Query: 70 VKKHASVDPLSL-HLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + + + LS A++F WPGP+T VL STT T T RV Sbjct: 68 LMPWIADEQLSAEQKARMFSRWPGPVTWVLPARSTT--PGWLTGRFTTLAVRVSDHPDVI 125 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLI 166 L +G PL SAN SG + +L + ++ P++ Sbjct: 126 ALCNAFGKPLVSTSANLSGLPPCRHAAEVL-AQFGRDFPVL 165 >gi|239928892|ref|ZP_04685845.1| hypothetical protein SghaA1_11775 [Streptomyces ghanaensis ATCC 14672] gi|291437219|ref|ZP_06576609.1| translation factor SUA5 [Streptomyces ghanaensis ATCC 14672] gi|291340114|gb|EFE67070.1| translation factor SUA5 [Streptomyces ghanaensis ATCC 14672] Length = 215 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 55/210 (26%), Positives = 90/210 (42%), Gaps = 27/210 (12%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + LR+A + G + +PT+TVYG+ D+ P A+ L K R P + + Sbjct: 14 TTGLREAASAIRRGELVVLPTDTVYGIGADAFTPDAVADLLAAKGRGRTMPTPVLIGSPN 73 Query: 69 MVKKHAS-VDPLSLHLAKLFWPGPLTLV--------LDLLSTTDIHPLSTANLKTACFRV 119 + + ++ L FWPG LTLV DL T T R+ Sbjct: 74 TLHGLVTDFSEMAWELVDAFWPGALTLVARHQPSLQWDLGDTR----------GTVAVRM 123 Query: 120 PCGFTKKLIETYGHPLAIPSANRSGQISITN---VKHILSSSICKEIPLIIDGGISKIGL 176 P + T P+A+ SAN +G + N + +L S+ + +DGG + + Sbjct: 124 PLHPVAIELLTDVGPMAVSSANLTGHPAPENCDAAQEMLGDSVS----VYLDGGPTPGNV 179 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAI 206 S+IV+V V +LR G + E L++ + Sbjct: 180 PSSIVDVTRPVPV-LLREGAISPEELRKVV 208 >gi|15617088|ref|NP_240301.1| hypothetical protein BU494 [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681840|ref|YP_002468226.1| dsRNA-binding protein, putative ribosome maturation factor (YrdC) [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682395|ref|YP_002468779.1| dsRNA-binding protein, putative ribosome maturation factor (YrdC) [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|11387305|sp|P57561|RIMN_BUCAI RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|25305375|pir||C84987 hypothetical protein [imported] - Buchnera sp. (strain APS) gi|10039153|dbj|BAB13187.1| hypothetical protein [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219622128|gb|ACL30284.1| dsRNA-binding protein, putative ribosome maturation factor (YrdC) [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624683|gb|ACL30838.1| dsRNA-binding protein, putative ribosome maturation factor (YrdC) [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 175 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 73/172 (42%), Gaps = 8/172 (4%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 IA PTE+++GL D + A+++L +K R LI SD +K + + + LS Sbjct: 8 IAYPTESMFGLGCDPNSKKAVKKLLNLKNRSIEKGLILVASDFDQIKMYVNENILSNKQK 67 Query: 85 K---LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPLAIPSA 140 K WPGP T +L T T T RV F KL +G + SA Sbjct: 68 KKIFFHWPGPFTFLLPAKPNTPY--WLTGKFNTVAVRVSAHFEIIKLCNAFGQAVVSTSA 125 Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192 N S + + K+ PL ++G I S I+N+ K +R + Sbjct: 126 NISNMTPCFTSEEVF-KCFGKDFPL-LNGKIGNEKNPSKIINIINGKLIRYV 175 >gi|255690473|ref|ZP_05414148.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides finegoldii DSM 17565] gi|260623922|gb|EEX46793.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides finegoldii DSM 17565] Length = 187 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 70/156 (44%), Gaps = 27/156 (17%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC--------- 62 ++KAC+ ++ G I PT+TV+G+ D+ N A+RR+YEIKKR ++ Sbjct: 5 IKKACQVMNEGGVILYPTDTVWGIGCDATNEEAVRRVYEIKKRADSKAMLVLVDSPVKVD 64 Query: 63 -HVSDISMVKK---HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 +V D+ V + PL+ + + G L +LL+ + N + Sbjct: 65 FYVQDVPAVAWDLIEVADKPLT-----IIYSGARNLATNLLAEDGSVGIRVTNEE----- 114 Query: 119 VPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154 F+++L + + + SAN SGQ N I Sbjct: 115 ----FSQRLCQQFRKAIVSTSANVSGQPGAANFSEI 146 >gi|283480062|emb|CAY75978.1| Uncharacterized protein yrdC [Erwinia pyrifoliae DSM 12163] Length = 190 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 73/161 (45%), Gaps = 8/161 (4%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M++ + DS L + E L IA PTE V+GL D + A+ RL +K+RP L Sbjct: 1 MKMNPVVDS--LAQCVEQLAQSQVIAYPTEAVFGLGCDPDSEEAVMRLLVLKQRPVKKGL 58 Query: 61 ICHVSDISMVKKHASVDPLSL-HLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 I +D + + + LS A++F WPGP+T VL STT T T Sbjct: 59 ILIAADYQQLIPWIADEQLSAEQKARMFSRWPGPVTWVLPARSTTP--GWLTGQFTTLAV 116 Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSS 157 RV L +G PL SAN +G +V +L+ Sbjct: 117 RVSDHPDVIALCHAFGKPLVSTSANLTGLPPCRHVAEVLAQ 157 >gi|312887346|ref|ZP_07746947.1| Sua5/YciO/YrdC/YwlC family protein [Mucilaginibacter paludis DSM 18603] gi|311300149|gb|EFQ77217.1| Sua5/YciO/YrdC/YwlC family protein [Mucilaginibacter paludis DSM 18603] Length = 206 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/199 (25%), Positives = 92/199 (46%), Gaps = 12/199 (6%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIR---RLYEIKKRPAMNPLICHV 64 + ++ + + L G I PT+TVYGL D NP AI ++ IK A IC+ Sbjct: 11 NEKSIDQVVQILKRGGLIIYPTDTVYGLGCDITNPKAIDAICKIRHIKPEKANFSFICY- 69 Query: 65 SDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CG 122 D+S + + +D + + K PGP T + + + + + L ++N KT RVP Sbjct: 70 -DLSHISDYIKPIDNATYRVLKKALPGPFTFIFN--ANSHVPKLLSSNKKTVGIRVPDNN 126 Query: 123 FTKKLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 +++++ G+P+ S + I + ++ + L+IDGG + ST+V Sbjct: 127 IAREIVKALGNPILSSSIRDEDEIIEYSTDPELIHEKYEGLVDLVIDGGYGD-NVPSTVV 185 Query: 182 NVQCEKKVRILRPGGLEIE 200 + I+R G ++E Sbjct: 186 DCTT-GDFEIIREGKGDLE 203 >gi|332996764|gb|EGK16389.1| ribosome maturation factor [Shigella flexneri K-272] Length = 172 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/142 (32%), Positives = 67/142 (47%), Gaps = 10/142 (7%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +A+ A + L+ IA PTE V+G+ D + TA+ RL E+K+RP LI ++ Sbjct: 7 GDAIAAAIDVLNEKRVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYE 66 Query: 69 MVKKHASVDPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRV---PCG 122 +K + L+ + +F WPGP+T V +TT T + RV P Sbjct: 67 QLKPYIDDTMLTDVQRETIFSCWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHP-- 122 Query: 123 FTKKLIETYGHPLAIPSANRSG 144 L + YG PL SAN SG Sbjct: 123 LVVALCQAYGKPLVSTSANLSG 144 >gi|227538437|ref|ZP_03968486.1| RNA binding protein [Sphingobacterium spiritivorum ATCC 33300] gi|227241719|gb|EEI91734.1| RNA binding protein [Sphingobacterium spiritivorum ATCC 33300] Length = 206 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 53/196 (27%), Positives = 89/196 (45%), Gaps = 12/196 (6%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEI---KKRPAMNPLICH-VSD 66 A+++ + L G I PT+TVYG+ D N AI R+ EI K A IC+ ++D Sbjct: 14 AIQQVVDVLKRGGVIIYPTDTVYGIGCDITNHKAIERVCEIRGLKVDKANLSFICYDLTD 73 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 IS K D + K PGP T + + ++ + L ++ KT RVP + Sbjct: 74 ISQYTK--PFDTSVFRVLKKALPGPFTFIFN--ASGQVPKLLSSKKKTVGIRVPDNHIVR 129 Query: 126 KLIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 +++ G+P+ S I + ++ + L+IDGG + ST+V++ Sbjct: 130 EIVRVLGNPIVTTSIRDEDDILEYSTDPELIHEKYENMVDLVIDGGYGD-NVASTVVDL- 187 Query: 185 CEKKVRILRPGGLEIE 200 I+R G ++E Sbjct: 188 TNGDFEIVREGKGDLE 203 >gi|300112979|ref|YP_003759554.1| SUA5/yciO/yrdC domain-containing protein [Nitrosococcus watsonii C-113] gi|299538916|gb|ADJ27233.1| SUA5/yciO/yrdC domain protein [Nitrosococcus watsonii C-113] Length = 185 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 73/165 (44%), Gaps = 11/165 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +R A + G IA PTE V+GL D R AI R+ ++K R I +D + ++ Sbjct: 8 VRFAARIIHRGGVIAYPTEGVFGLGCDPRQKAAIERILQLKGRSVHKGFILIAADFTQLQ 67 Query: 72 KHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 + + PL+ WPGP+T +L + D+ P T RV L Sbjct: 68 PY--LLPLTASTRSRLEETWPGPVTWLLP--ARGDVPPWLRGRHDTLAVRVTAYPLAACL 123 Query: 128 IETYGHPLAIPSANRSGQ---ISITNVKHILSSSICKEIPLIIDG 169 +T GH L SANR+G+ + V+ +S+ +P I G Sbjct: 124 CQTAGHALVSTSANRAGRPPAQTTLQVRRSFGASLDYILPGITGG 168 >gi|297202392|ref|ZP_06919789.1| yrdC domain-containing protein [Streptomyces sviceus ATCC 29083] gi|197710087|gb|EDY54121.1| yrdC domain-containing protein [Streptomyces sviceus ATCC 29083] Length = 215 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 58/211 (27%), Positives = 93/211 (44%), Gaps = 29/211 (13%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR------PAM----N 58 + LR+A + G + +PT+TVYG+ D+ + A+ L E K R P + N Sbjct: 14 TTGLREAASAVRRGELVVLPTDTVYGIGADAFSSEAVHDLLEAKGRGRNMPTPVLIGSPN 73 Query: 59 PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 L V+D S L+ L FWPG LTLV + T T R Sbjct: 74 TLHGLVTDFSE---------LAWELVDAFWPGALTLVAKHQPSLQWDLGDTRG--TVAVR 122 Query: 119 VPCGFTKKLIETYGHPLAIPSANRSGQIS---ITNVKHILSSSICKEIPLIIDGGISKIG 175 +P + T P+A+ SAN +G S + +L S+ + +DGG + Sbjct: 123 MPLHPVAIELLTEVGPMAVSSANLTGHPSPETCDAAQEMLGDSVS----VYLDGGPTPGN 178 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAI 206 + S+IV+V E + +LR G + + L++ + Sbjct: 179 VPSSIVDVTREVPL-LLRAGAISADELRKVV 208 >gi|292900851|ref|YP_003540220.1| hypothetical protein EAM_3158 [Erwinia amylovora ATCC 49946] gi|291200699|emb|CBJ47832.1| conserved hypothetical protein [Erwinia amylovora ATCC 49946] Length = 188 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/161 (31%), Positives = 73/161 (45%), Gaps = 7/161 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 ++L + E L IA PTE V+GL D + A+ RL +K+RP LI +D Sbjct: 6 DSLAQCVEQLAQSKVIAYPTEAVFGLGCDPDSEEAVMRLLALKQRPVEKGLILIAADYQQ 65 Query: 70 VKKHASVDPLSL-HLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + + + LS A++F WPGP+T VL STT T T RV Sbjct: 66 LMPWIADEQLSAEQKARMFSRWPGPVTWVLPARSTT--PGWLTGRFTTLAVRVSDHPDVI 123 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLI 166 L +G PL SAN SG + +L + ++ P++ Sbjct: 124 ALCNAFGKPLVSTSANLSGLPPCRHAAEVL-AQFGRDFPVL 163 >gi|188993332|ref|YP_001905342.1| Sua5/YciO/YrdC family protein [Xanthomonas campestris pv. campestris str. B100] gi|167735092|emb|CAP53304.1| Sua5/YciO/YrdC family protein [Xanthomonas campestris pv. campestris] Length = 191 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/183 (27%), Positives = 81/183 (44%), Gaps = 7/183 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L A L G IA PTE V+GL D R A+ RL EIK+RP +I S + +++ Sbjct: 11 LDAAVATLARGGVIAYPTEAVWGLGCDPRQEDAVLRLLEIKRRPVDKGVIVVASGLDVLQ 70 Query: 72 KHASVDPL-SLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + L S L + WPGP T +L + T T + R+ L Sbjct: 71 DWIDIAALGSEQLTAVLAQWPGPHTWILPV--TAQAPRWVTGDHDGLAVRISAHPVVAAL 128 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + +G PL SAN +G+ + + L ++ I ++DG + + + I + + + Sbjct: 129 CKAWGAPLVSTSANLAGEPPARS-RAALDPALLARIDGVLDGEVGGLAQPTPIRDARTGQ 187 Query: 188 KVR 190 +R Sbjct: 188 ILR 190 >gi|251788008|ref|YP_003002729.1| SUA5/yciO/yrdC domain-containing protein [Dickeya zeae Ech1591] gi|247536629|gb|ACT05250.1| SUA5/yciO/yrdC domain protein [Dickeya zeae Ech1591] Length = 190 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 6/135 (4%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83 IA PTE V+GL D + A+ RL +K+RP LI +D ++ + + LS Sbjct: 23 IAYPTEAVFGLGCDPDSEMAVERLLALKQRPREKGLILIAADFRQLEPYVEMAALSDAQR 82 Query: 84 AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140 +F WPGP+T V+ + T T + RV ++L +G PL SA Sbjct: 83 QTIFTTWPGPVTWVIP--AKTSTPDWLTGRFNSLAVRVSDHPLVRQLCLAFGKPLVSTSA 140 Query: 141 NRSGQISITNVKHIL 155 N +GQ V ++ Sbjct: 141 NLTGQPPCRTVSEVV 155 >gi|166713746|ref|ZP_02244953.1| hypothetical protein Xoryp_20475 [Xanthomonas oryzae pv. oryzicola BLS256] Length = 187 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/183 (26%), Positives = 76/183 (41%), Gaps = 7/183 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L A L G IA PTE V+GL D R A+ RL EIK+RP +I S + +++ Sbjct: 7 LDNAVATLTQGGVIAYPTEAVWGLGCDPRREAAVLRLLEIKRRPVDKGVIVVTSSVDVLR 66 Query: 72 KHASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 +D P WPGP T +L + T T R+ L Sbjct: 67 DWVDIDALAPARRQDVLASWPGPHTWILPV--TARAPRWVTGEHDGLAVRISAHPVVAAL 124 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +G PL SAN +G+ + L ++ I ++DG + + + I + + + Sbjct: 125 CAAWGAPLVSTSANLAGEPPARS-HAALDPALLATIDGVVDGEVGALAQPTRIRDARSGQ 183 Query: 188 KVR 190 +R Sbjct: 184 ILR 186 >gi|21233184|ref|NP_639101.1| hypothetical protein XCC3756 [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66770124|ref|YP_244886.1| hypothetical protein XC_3826 [Xanthomonas campestris pv. campestris str. 8004] gi|81303924|sp|Q4UQ07|RIMN_XANC8 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|81792557|sp|Q8P4F2|RIMN_XANCP RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|212288259|sp|B0RWR5|RIMN_XANCB RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|21115034|gb|AAM43013.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575456|gb|AAY50866.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. 8004] Length = 187 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/183 (27%), Positives = 81/183 (44%), Gaps = 7/183 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L A L G IA PTE V+GL D R A+ RL EIK+RP +I S + +++ Sbjct: 7 LDAAVATLARGGVIAYPTEAVWGLGCDPRQEDAVLRLLEIKRRPVDKGVIVVASGLDVLQ 66 Query: 72 KHASVDPL-SLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + L S L + WPGP T +L + T T + R+ L Sbjct: 67 DWIDIAALGSEQLTAVLAQWPGPHTWILPV--TAQAPRWVTGDHDGLAVRISAHPVVAAL 124 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + +G PL SAN +G+ + + L ++ I ++DG + + + I + + + Sbjct: 125 CKAWGAPLVSTSANLAGEPPARS-RAALDPALLARIDGVLDGEVGGLAQPTPIRDARTGQ 183 Query: 188 KVR 190 +R Sbjct: 184 ILR 186 >gi|187924529|ref|YP_001896171.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia phytofirmans PsJN] gi|187715723|gb|ACD16947.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia phytofirmans PsJN] Length = 211 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 52/186 (27%), Positives = 88/186 (47%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A + ++ G +A+PT++ Y LA + A+ RL I+ L V D+S + Sbjct: 17 VKQAVQIINDGGVVALPTDSSYALACHLDDKDAVERLRRIRGLDEKQLLSLLVRDLSELA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129 A VD L K PGP VL +T ++ LS + KT RVP T ++E Sbjct: 77 NFAMVDNRQYRLIKSVTPGPYVFVLQ--ATKEVPRRLSHPSRKTIGLRVPDHAITLAILE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL + G+ N + + K++ L+ID G + ST++++ + V Sbjct: 135 ELGQPLLGSTLIMPGETQPLNDPEEIRERLEKQLDLVIDSGPC-VCEPSTVIDLTGAEPV 193 Query: 190 RILRPG 195 ++RPG Sbjct: 194 -LVRPG 198 >gi|290957363|ref|YP_003488545.1| hypothetical protein SCAB_28871 [Streptomyces scabiei 87.22] gi|260646889|emb|CBG69986.1| conserved hypothetical protein [Streptomyces scabiei 87.22] Length = 215 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 59/209 (28%), Positives = 93/209 (44%), Gaps = 25/209 (11%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR------PAM----N 58 + LR+A + G + +PT+TVYG+ D+ A+ L E K R P + N Sbjct: 14 ATGLREAASAVRRGELVVLPTDTVYGIGADAFTAEAVADLLEAKGRGRSMPTPVLIGSPN 73 Query: 59 PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 L V+D S ++ L FWPG LTLV + T T R Sbjct: 74 TLHGLVTDFS---------EMAWELVDAFWPGALTLVAKHQPSLQWDLGDTRG--TVAVR 122 Query: 119 VPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE- 177 +P + T P+A+ SAN +G + N + + + + +DGG + G+E Sbjct: 123 MPLHPVAIELLTEVGPMAVSSANLTGHPAPENCDAA-EAMLGDSVSVYLDGGPTP-GIEP 180 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAI 206 S+IV+V + V +LR G L E L++ + Sbjct: 181 SSIVDVTGKVPV-LLRAGALSAEELRKVV 208 >gi|257457519|ref|ZP_05622686.1| Sua5/YciO/YrdC/YwlC family protein [Treponema vincentii ATCC 35580] gi|257444905|gb|EEV19981.1| Sua5/YciO/YrdC/YwlC family protein [Treponema vincentii ATCC 35580] Length = 182 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 55/188 (29%), Positives = 91/188 (48%), Gaps = 29/188 (15%) Query: 19 LDAGLPIAIPTETVYGLA-VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77 L G I IPT+T+YG + + + I R IK R P I +++ + + ++ + Sbjct: 18 LKKGNVIIIPTDTIYGFSGLIGKTAELIAR---IKGREENKPFIALIAEPADIYRYTELK 74 Query: 78 PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136 + H+ L WP PLTL++ L T FR P + + ++ G + Sbjct: 75 -IPEHILNL-WPAPLTLIVPL-----------KGQGTQAFRCPADEWLRSVVAAAGDAVY 121 Query: 137 IPSANRSGQISITNVKHILSSSICKE----IPLIIDGGISKIGLESTIVNVQCEKKVRIL 192 S NRSG +T++K +ICKE + L++DGG + GL ST+V++ R+L Sbjct: 122 STSVNRSGTSPLTDIK-----TICKEFEDSVGLVVDGGNLE-GLPSTLVDLTSGTP-RVL 174 Query: 193 RPGGLEIE 200 R G + I+ Sbjct: 175 RQGSVVID 182 >gi|215488582|ref|YP_002331013.1| putative ribosome maturation factor [Escherichia coli O127:H6 str. E2348/69] gi|312968392|ref|ZP_07782602.1| ribosome maturation factor [Escherichia coli 2362-75] gi|215266654|emb|CAS11093.1| predicted ribosome maturation factor [Escherichia coli O127:H6 str. E2348/69] gi|312287217|gb|EFR15127.1| ribosome maturation factor [Escherichia coli 2362-75] gi|320195374|gb|EFW70001.1| putative ribosome maturation factor [Escherichia coli WV_060327] gi|323189112|gb|EFZ74396.1| ribosome maturation factor [Escherichia coli RN587/1] Length = 190 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 68/142 (47%), Gaps = 10/142 (7%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +A+ A + L+ IA PTE V+G+ D + TA+ RL E+K+RP LI ++ Sbjct: 7 GDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYE 66 Query: 69 MVKKHASVDPLSLHLAK---LF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 +K + +D L A+ +F WPGP+T V +TT T + RV Sbjct: 67 QLKPY--IDDTMLTDAQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHP 122 Query: 123 FTKKLIETYGHPLAIPSANRSG 144 L + YG PL SAN SG Sbjct: 123 LVVALCKAYGKPLVSTSANLSG 144 >gi|157372740|ref|YP_001480729.1| putative ribosome maturation factor [Serratia proteamaculans 568] gi|212288231|sp|A8GKG1|RIMN_SERP5 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|157324504|gb|ABV43601.1| SUA5/yciO/yrdC domain [Serratia proteamaculans 568] Length = 189 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/127 (33%), Positives = 61/127 (48%), Gaps = 10/127 (7%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL--- 81 IA PTE V+GL D + A+ L +K+RP LI +D + + + +D +L Sbjct: 22 IAYPTEAVFGLGCDPDSEQAVNALLALKQRPWEKGLILIAADYAQLTPY--IDDTALNEQ 79 Query: 82 HLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIP 138 A +F WPGP+T V+ S T L T + RV ++L +G PL Sbjct: 80 QRATMFASWPGPVTWVIPARSETSR--LLTGRFNSLAVRVSDHPLVQQLCRQFGKPLVST 137 Query: 139 SANRSGQ 145 SAN SGQ Sbjct: 138 SANLSGQ 144 >gi|261879276|ref|ZP_06005703.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella bergensis DSM 17361] gi|270334108|gb|EFA44894.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella bergensis DSM 17361] Length = 188 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 72/151 (47%), Gaps = 5/151 (3%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV- 64 +T ++ A E L G I PT+TV+G+ D+ N A+ ++Y IKKR LIC V Sbjct: 1 MTREEDIKNAVEVLKQGGVILYPTDTVWGIGCDATNTEAVAKVYRIKKRDDSKALICLVD 60 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 SD + + +V ++ L + P T++LD ++ P A + R+ F Sbjct: 61 SDARLQRYVRNVPAIAWDLLDVA-DKPTTVILD--GAVNLAPNLIAEDGSIALRITSEPF 117 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHI 154 +K+L + L SAN SG+ N K I Sbjct: 118 SKELCYRFQKALVSTSANISGEPPAQNYKDI 148 >gi|167765264|ref|ZP_02437377.1| hypothetical protein BACSTE_03652 [Bacteroides stercoris ATCC 43183] gi|167696892|gb|EDS13471.1| hypothetical protein BACSTE_03652 [Bacteroides stercoris ATCC 43183] Length = 187 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 15/150 (10%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 ++KAC+ + G I PT+T++G+ D+ N A+RR+YEIK+R ++ +V Sbjct: 5 IKKACQVMREGGVILYPTDTIWGIGCDATNEDAVRRVYEIKQRQDSKAMLV------LVD 58 Query: 72 KHASVDPLSLHLAKLFW------PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124 VD + ++ W PLT++ + L A + RV F+ Sbjct: 59 SSVKVDFYVRDVPEVAWDLIDLADKPLTIIYSGARNLAANLL--AEDGSVGIRVTNEDFS 116 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHI 154 K+L + + + SAN SGQ S N I Sbjct: 117 KRLCQQFRKAIVSTSANISGQPSPKNFSEI 146 >gi|312075017|ref|XP_003140229.1| yrdC domain-containing protein [Loa loa] gi|307764605|gb|EFO23839.1| yrdC domain-containing protein [Loa loa] Length = 232 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 59/201 (29%), Positives = 96/201 (47%), Gaps = 23/201 (11%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 T S + + + ++G +A+PT+T+YG+ N +LY++K+R + PL VS+ Sbjct: 18 TCSATICRCLQIFESGGIVALPTDTLYGVVTTLSNSD---KLYKLKRRNHLKPLGLFVSN 74 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTK 125 + V++ + L L PGP+TL+ + +T + + T R+P F + Sbjct: 75 VRDVQRWCRQTIDNSQLRTLL-PGPVTLIFE--RSTFLPRIFNPEHGTVGIRIPDHDFVR 131 Query: 126 KLIETYGH-PLAIPSANRSGQ----ISITNVKHILSSSICKEIPLIIDGGI-----SKIG 175 L+ PLA SAN S I I + K + S E+ LIIDGG+ K+ Sbjct: 132 SLMTRLDDVPLAQTSANISNNQNNPICIEDFKDLWS-----ELDLIIDGGVILRPDGKVN 186 Query: 176 LE-STIVNVQCEKKVRILRPG 195 E ST+VN+ I+R G Sbjct: 187 HEGSTVVNLSIPGTYSIIRDG 207 >gi|21223722|ref|NP_629501.1| hypothetical protein SCO5362 [Streptomyces coelicolor A3(2)] gi|256785185|ref|ZP_05523616.1| hypothetical protein SlivT_11905 [Streptomyces lividans TK24] gi|289769078|ref|ZP_06528456.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces lividans TK24] gi|8568784|emb|CAB94533.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)] gi|289699277|gb|EFD66706.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces lividans TK24] Length = 215 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 59/210 (28%), Positives = 92/210 (43%), Gaps = 29/210 (13%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR------PAM----NP 59 LR+A + G + +PT+TVYG+ D+ A+ L E K R P + N Sbjct: 15 TGLREAASAVRRGELVVLPTDTVYGIGADAFAAEAVGDLLEAKGRGRNMPSPVLIGSPNT 74 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 L V+D S ++ L FWPG LTLV + T T R+ Sbjct: 75 LHGLVTDFS---------EMAWELVDAFWPGALTLVAKHQPSLQWDLGETRG--TVAVRM 123 Query: 120 PCGFTKKLIETYGHPLAIPSANRSGQISITN---VKHILSSSICKEIPLIIDGGISKIGL 176 P + T P+A+ SAN +G + + + +L S+ + +DGG + + Sbjct: 124 PLHPVAIELLTEVGPMAVSSANLTGHPAPEDCDAAQQMLGDSVS----VYLDGGPTPGIV 179 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAI 206 S+IV+V E V +LR G L E L++ + Sbjct: 180 PSSIVDVTREVPV-LLRAGALSAEELRKVV 208 >gi|269140536|ref|YP_003297237.1| putative ribosome maturation factor [Edwardsiella tarda EIB202] gi|267986197|gb|ACY86026.1| putative ribosome maturation factor [Edwardsiella tarda EIB202] gi|304560321|gb|ADM42985.1| hypothetical protein ETAF_2883 [Edwardsiella tarda FL6-60] Length = 189 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/140 (32%), Positives = 66/140 (47%), Gaps = 6/140 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S++L A L IA PTE V+GL D + +A++ L ++K+RP LI +D Sbjct: 6 SDSLAAAVAALRQQRVIAYPTEAVFGLGCDPDSESAVQTLLDLKQRPWDKGLILIAADYQ 65 Query: 69 MVKKHASVDPL-SLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 + + + L A +F WPGP+T V+ + D T T RV Sbjct: 66 QLLPYVCDEALQGERRAAVFSRWPGPVTWVMP--ARADTPRWLTGRFSTLAVRVSAHPQV 123 Query: 125 KKLIETYGHPLAIPSANRSG 144 ++L +YG PL SAN SG Sbjct: 124 QQLCRSYGKPLVSTSANLSG 143 >gi|254381732|ref|ZP_04997096.1| translation factor SUA5 [Streptomyces sp. Mg1] gi|194340641|gb|EDX21607.1| translation factor SUA5 [Streptomyces sp. Mg1] Length = 214 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 58/207 (28%), Positives = 93/207 (44%), Gaps = 27/207 (13%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP---LICHVS 65 + LR+A + + G + +PT+TVYG+ D+ +P A+ R+ K R P L+ Sbjct: 14 AEGLREAADAVRRGELVVLPTDTVYGVGADAFSPDAVARVLRAKGRGRQMPSPVLVGSPD 73 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLV--------LDLLSTTDIHPLSTANLKTACF 117 + + SV + L FWPG LTLV DL T T Sbjct: 74 ALDGLVIDLSVQ--ARELIDAFWPGGLTLVARHEPSIKWDLGETH----------GTVAI 121 Query: 118 RVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P L++ G PLA+ SAN +G+ S + L + + + + +D G + + Sbjct: 122 RMPAHPVAISLLDQTG-PLAVSSANLTGRPSPQDCDAAL-AMLGDTVAVYLDAGPTPADV 179 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLK 203 S+IV+V + V +LR G L L+ Sbjct: 180 PSSIVDVTAKTPV-LLREGALSAARLR 205 >gi|119471686|ref|ZP_01614071.1| putative double-stranded RNA-binding protein with unique protein fold, with YrdC/RibB domain [Alteromonadales bacterium TW-7] gi|119445465|gb|EAW26752.1| putative double-stranded RNA-binding protein with unique protein fold, with YrdC/RibB domain [Alteromonadales bacterium TW-7] Length = 187 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 78/178 (43%), Gaps = 11/178 (6%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L+ G I PTE V+GL D N A+ +L IK+RP LI + + K+ VD Sbjct: 14 LNEGEVIVYPTEAVFGLGCDPDNQHAVEKLLAIKQRPVEKGLILIADNYGQLLKY--VDD 71 Query: 79 LSLHL---AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYG 132 + + A +F WP +T V+ +T T T RV T K+L + +G Sbjct: 72 AKVPMDKRADIFSSWPAAITWVMPAAKST--PKWLTGQFDTIAVRVTNHPTVKRLCQEFG 129 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 PL SAN +GQ ++ +++ ++ +D + STI + K R Sbjct: 130 KPLVSTSANLTGQETVISIEQA-KEQFADQVGFYVDEPLGGNTQPSTIKDAMTGKVFR 186 >gi|167581361|ref|ZP_02374235.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia thailandensis TXDOH] Length = 209 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 74/161 (45%), Gaps = 4/161 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E + G IA+PT++ Y LA + A+ R+ I+ L V D+S + Sbjct: 17 IKQAAEIVRGGGVIALPTDSSYALACHLDDKDAVERVRRIRGLDEKQHLSLLVRDLSELA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129 A VD L K PGP +L +T ++ LS + KT RVP T L+E Sbjct: 77 TFAMVDNRQYRLIKSVTPGPYVFILQ--ATKEVPRRLSHPSRKTIGLRVPAHAITLALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 + G PL + N + + + K++ L+IDGG Sbjct: 135 SLGQPLLGTTLILPPDDDPLNDPEEIRARLEKQVDLVIDGG 175 >gi|120555438|ref|YP_959789.1| Sua5/YciO/YrdC/YwlC family protein [Marinobacter aquaeolei VT8] gi|120325287|gb|ABM19602.1| Sua5/YciO/YrdC/YwlC family protein [Marinobacter aquaeolei VT8] gi|302608188|emb|CBW44443.1| putative RNA binding protein with YrdC/RibB domain [Marinobacter hydrocarbonoclasticus] Length = 207 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 77/174 (44%), Gaps = 10/174 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E L G I PT++ Y L + A R+ I++ + D+S + Sbjct: 17 IKQAVEILRKGGVIVYPTDSGYALGCHLGDKQAADRIKRIRRLDDKHNFTLVCRDLSDIG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127 +A VD L K F PGP T +LD S +HP ++ RVP ++L Sbjct: 77 VYAKVDNTQYRLLKNFTPGPYTFILDATSEVPRRLLHP----KRRSIGIRVPDNEIVREL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 + G P+ + G+ + + ++ E+ LIIDGG G+E+T V Sbjct: 133 LGELGEPIMSSTLILPGETEPLTDPYDIRETLGHELDLIIDGGFC--GMEATTV 184 >gi|313207112|ref|YP_004046289.1| translation factor sua5 [Riemerella anatipestifer DSM 15868] gi|312446428|gb|ADQ82783.1| translation factor SUA5 [Riemerella anatipestifer DSM 15868] gi|315022490|gb|EFT35517.1| Sua5 YciO YrdC YwlC family protein [Riemerella anatipestifer RA-YM] gi|325335450|gb|ADZ11724.1| Sua5B [Riemerella anatipestifer RA-GD] Length = 182 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/184 (25%), Positives = 84/184 (45%), Gaps = 5/184 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++ E L +G + PT+T++GL D+ NP AI+++Y+IKKR LI V ++ Sbjct: 1 MQEIVEVLKSGGTVLYPTDTIWGLGCDATNPEAIQKIYKIKKREPHKSLIILVDTEKRLQ 60 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETY 131 V ++ + L P+T++ D L + V F +KLI Sbjct: 61 DLVEVPEMAWEIIDLS-EKPVTIIYDAPKGLP-KELLAEDGSIGIRLVKDAFCQKLIGKL 118 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE--STIVNVQCEKKV 189 PL SAN SG S I S + + +++ K+ S+++ + + ++ Sbjct: 119 NAPLVSTSANFSGDKSPKQFSDI-SPKLIDAVDFVVEEQKDKVSQWAGSSVIRIWKDNRI 177 Query: 190 RILR 193 ++LR Sbjct: 178 KVLR 181 >gi|254387521|ref|ZP_05002760.1| Sua5/YciO/YrdC/YwlC [Streptomyces clavuligerus ATCC 27064] gi|294815092|ref|ZP_06773735.1| Sua5/YciO/YrdC/YwlC [Streptomyces clavuligerus ATCC 27064] gi|326443454|ref|ZP_08218188.1| hypothetical protein SclaA2_20413 [Streptomyces clavuligerus ATCC 27064] gi|197701247|gb|EDY47059.1| Sua5/YciO/YrdC/YwlC [Streptomyces clavuligerus ATCC 27064] gi|294327691|gb|EFG09334.1| Sua5/YciO/YrdC/YwlC [Streptomyces clavuligerus ATCC 27064] Length = 215 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 56/204 (27%), Positives = 91/204 (44%), Gaps = 15/204 (7%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + LR+A + G + +PT+TVYG+ D+ + A+ L E K R P + + Sbjct: 14 ATGLREATSAVRRGELVVLPTDTVYGIGADAFSSEAVSDLLEAKGRGRNMPTPVLIGSPN 73 Query: 69 MVKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125 + H V S L FWPG LTLV + T T R+P Sbjct: 74 TL--HGLVTDFSEQAWELVDAFWPGALTLVAKHQPSLQWDLGDTRG--TVAVRMPLHPVA 129 Query: 126 KLIETYGHPLAIPSANRSGQISITN---VKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 + T P+A+ SAN +G + + + +L S+ + +DGG + + S+IV+ Sbjct: 130 IELLTETGPMAVSSANLTGHRAPEDCDAAQEMLGDSVS----VYLDGGPTPGIVPSSIVD 185 Query: 183 VQCEKKVRILRPGGLEIETLKRAI 206 V V +LR G L+ E L++ + Sbjct: 186 VTGRVPV-LLRAGALDAEELRKVV 208 >gi|300769987|ref|ZP_07079866.1| Sua5/YciO/YrdC/YwlC family protein [Sphingobacterium spiritivorum ATCC 33861] gi|300762463|gb|EFK59280.1| Sua5/YciO/YrdC/YwlC family protein [Sphingobacterium spiritivorum ATCC 33861] Length = 206 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 53/199 (26%), Positives = 90/199 (45%), Gaps = 12/199 (6%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEI---KKRPAMNPLICH- 63 + A+++ + L G I PT+TVYG+ D N AI R+ EI K A IC+ Sbjct: 11 NEKAIQQVVDVLKRGGVIIYPTDTVYGIGCDITNHKAIERVCEIRGMKVDKANLSFICYD 70 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 ++DIS K D + K PGP T + + ++ + L ++ KT RVP Sbjct: 71 LTDISQYTK--PFDTSVFRVLKKALPGPFTFIFN--ASGQVPKLLSSKKKTVGIRVPDNH 126 Query: 123 FTKKLIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 ++++ G+P+ S I + ++ + L+IDGG + ST+V Sbjct: 127 IVREIVRVLGNPIVTASIRDEDDILEYSTDPELIHEKYENMVDLVIDGGYGD-NVASTVV 185 Query: 182 NVQCEKKVRILRPGGLEIE 200 ++ I+R G ++E Sbjct: 186 DLTG-GDFEIVREGKGDLE 203 >gi|209522310|ref|ZP_03270935.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. H160] gi|209497255|gb|EDZ97485.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. H160] Length = 211 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 76/161 (47%), Gaps = 4/161 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A + ++ G +A+PT++ Y LA + A+ RL ++ L V D+S + Sbjct: 17 VKQAAQIINDGGVVALPTDSTYALACRLDDKDAVERLRRVRGLDDKQLLSLLVRDLSELA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129 A VD L K PGP VL +T ++ +S + KT RVP T ++E Sbjct: 77 NFAMVDNWQYRLLKSVTPGPYVFVLQ--ATKEVPRRVSHPSRKTIGLRVPDHAITLAILE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 G PL + G+ N + + + K++ L+IDGG Sbjct: 135 ELGQPLLSTTLIMPGETEPLNDPEEIRALLEKQLDLVIDGG 175 >gi|116332436|ref|YP_802154.1| Sua5 family translation factor [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116126125|gb|ABJ77396.1| Translation factor, SUA5 family [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 202 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 54/191 (28%), Positives = 87/191 (45%), Gaps = 14/191 (7%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 + + L+ G+ I PT+TVY L DS++ + +LYE+K P PL IS+ + Sbjct: 19 STKLLEGGIYI-FPTDTVYALVADSQSKLGVEKLYELKNIPKNQPLSLICPSISVASNY- 76 Query: 75 SVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 ++ LS L K PGP T + S K R+P + + L++ Sbjct: 77 -IEYLSNEAFRLMKKITPGPFTFITRANKHLPRVSFSNQKEKQIGIRIPDAIYLQSLLKI 135 Query: 131 YGHPLAIPS--ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 + +PL S AN I + ++ I + + I+DGGI K+ L STI+N+ ++ Sbjct: 136 HPNPLTSTSVFANDEFIIEVDLLEQIYGARVEG----IVDGGIVKMEL-STILNMTNDEM 190 Query: 189 VRILRPGGLEI 199 I G E Sbjct: 191 TIIREGKGFEF 201 >gi|238896779|ref|YP_002921524.1| putative ribosome maturation factor [Klebsiella pneumoniae NTUH-K2044] gi|238549106|dbj|BAH65457.1| putative RNA-binding protein with unique protein fold [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 205 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/141 (33%), Positives = 62/141 (43%), Gaps = 6/141 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S A+ A L IA PTE V+G+ D + TA+ RL E+K+RP LI + Sbjct: 22 SEAVAHAVAVLKNEHVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVEKGLILIAASFE 81 Query: 69 MVKKHASVDPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 +K + LS +F WPGP+T V T T + RV Sbjct: 82 QLKPYIDDSRLSDSQREAIFSCWPGPVTFVFPARPETPR--WLTGRFDSLAVRVTNHPLV 139 Query: 125 KKLIETYGHPLAIPSANRSGQ 145 +L E YG PL SAN +GQ Sbjct: 140 IELCEAYGKPLVSTSANLTGQ 160 >gi|116329499|ref|YP_799219.1| Sua5 family translation factor [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116122243|gb|ABJ80286.1| Translation factor, SUA5 family [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 202 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 54/191 (28%), Positives = 87/191 (45%), Gaps = 14/191 (7%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 + + L+ G+ I PT+TVY L DS++ + +LYE+K P PL IS+ + Sbjct: 19 STKLLEGGVYI-FPTDTVYALVADSQSKLGVEKLYELKNIPKNQPLSLICPSISVASNY- 76 Query: 75 SVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 ++ LS L K PGP T + S K R+P + + L++ Sbjct: 77 -IEYLSNEAFRLMKKITPGPFTFITRANKHLPRVSFSNQKEKQIGIRIPDAIYLQSLLKI 135 Query: 131 YGHPLAIPS--ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 + +PL S AN I + ++ I + + I+DGGI K+ L STI+N+ ++ Sbjct: 136 HPNPLTSTSVFANDEFIIEVDLLEQIYGARVEG----IVDGGIVKMEL-STILNMTNDEM 190 Query: 189 VRILRPGGLEI 199 I G E Sbjct: 191 TIIREGKGFEF 201 >gi|218128562|ref|ZP_03457366.1| hypothetical protein BACEGG_00132 [Bacteroides eggerthii DSM 20697] gi|317475623|ref|ZP_07934884.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides eggerthii 1_2_48FAA] gi|217989286|gb|EEC55600.1| hypothetical protein BACEGG_00132 [Bacteroides eggerthii DSM 20697] gi|316908193|gb|EFV29886.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides eggerthii 1_2_48FAA] Length = 187 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 15/150 (10%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 ++KAC+ + G I PT+T++G+ D+ N A+RR+YEIK+R ++ +V Sbjct: 5 IKKACQVMREGGVILYPTDTIWGIGCDATNEDAVRRVYEIKQRQDSKAMLV------LVD 58 Query: 72 KHASVDPLSLHLAKLFW------PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124 VD + ++ W PLT++ + L A + RV F+ Sbjct: 59 SSVKVDFYVQDVPEVAWDLIDLADKPLTIIYSGARNLAANLL--AEDGSVGIRVTNEDFS 116 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHI 154 K+L + + + SAN SGQ S N I Sbjct: 117 KRLCQQFRKAVVSTSANISGQPSPRNFSEI 146 >gi|257471545|ref|ZP_05635544.1| dsRNA-binding protein, putative ribosome maturation factor (YrdC) [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|311086217|gb|ADP66299.1| dsRNA-binding protein, putative ribosome maturation factor (YrdC) [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086794|gb|ADP66875.1| dsRNA-binding protein, putative ribosome maturation factor (YrdC) [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087381|gb|ADP67461.1| dsRNA-binding protein, putative ribosome maturation factor (YrdC) [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087878|gb|ADP67957.1| dsRNA-binding protein, putative ribosome maturation factor (YrdC) [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 190 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 52/185 (28%), Positives = 77/185 (41%), Gaps = 8/185 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 N+L + L IA PTE+++GL D + A+++L +K R LI SD Sbjct: 8 NSLLYCIKMLHNDDVIAYPTESMFGLGCDPNSKKAVKKLLNLKNRSIEKGLILVASDFDQ 67 Query: 70 VKKHASVDPLSLHLAK---LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-K 125 +K + + + LS K WPGP T +L T T T RV F Sbjct: 68 IKMYVNENILSNKQKKKIFFHWPGPFTFLLPAKPNTPY--WLTGKFNTVAVRVSAHFEII 125 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 KL +G + SAN S + + K+ PL ++G I S I+N+ Sbjct: 126 KLCNAFGQAVVSTSANISNMTPCFTSEEVF-KCFGKDFPL-LNGKIGNEKNPSKIINIIN 183 Query: 186 EKKVR 190 K +R Sbjct: 184 GKLIR 188 >gi|253570302|ref|ZP_04847711.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|298384884|ref|ZP_06994443.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 1_1_14] gi|251840683|gb|EES68765.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|298262028|gb|EFI04893.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 1_1_14] Length = 187 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 68/150 (45%), Gaps = 15/150 (10%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 ++KAC+ ++ G I PT+TV+G+ D+ N A+ R+YEIKKR ++ +V Sbjct: 5 IKKACQVMNEGGVILYPTDTVWGIGCDATNEEAVHRVYEIKKRADSKAMLV------LVD 58 Query: 72 KHASVDPLSLHLAKLFW------PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124 VD + + W PLT++ ++ P A + RV F+ Sbjct: 59 SPVKVDFYVQDVPDVAWDLIEVADKPLTIIYS--GARNLAPNLLAEDGSVGIRVTNEEFS 116 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHI 154 ++L + + + SAN SGQ N I Sbjct: 117 RRLCQQFRKAIVSTSANISGQPGAANFTEI 146 >gi|118576874|ref|YP_876617.1| translation factor [Cenarchaeum symbiosum A] gi|118195395|gb|ABK78313.1| translation factor [Cenarchaeum symbiosum A] Length = 189 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 1/91 (1%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + +R+A + + +G I PT+TVYG+ D + A+ ++ IK R PL I Sbjct: 23 DEDGIRRAVDAVRSGGVIVFPTDTVYGMGCDPYDAKAVGEIFRIKGRDPEKPLPLLAHSI 82 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDL 98 ++ A+++ + FWPGPLT+V +L Sbjct: 83 GDLEGVAALEGYG-GMTSRFWPGPLTIVAEL 112 >gi|332829168|gb|EGK01832.1| Sua5/YciO/YrdC/YwlC family protein [Dysgonomonas gadei ATCC BAA-286] Length = 187 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 92/192 (47%), Gaps = 20/192 (10%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 ++KA E L AG I PT+T++G+ D+ N A+R++YE+KKR L I++V Sbjct: 5 IKKAFEVLVAGGLILYPTDTIWGIGCDATNEEAVRKVYELKKRVDSKAL------ITLVD 58 Query: 72 KHASVDPLSLHLAKLFW------PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124 +D + ++ W PLT++ D + ++ P A + RV F+ Sbjct: 59 NPVKLDFYIDGVPEIAWDLIEVSDKPLTIIYD--NARNVAPNLIAEDGSLAIRVTKESFS 116 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII---DGGISKIGLESTIV 181 ++L + + L SAN SG+ S N I S I + I+ ISK S+I+ Sbjct: 117 QELCKRFRKALVSTSANISGEPSPANFSEI-SDEIKNGVDYIVQYRQNDISK-SKASSII 174 Query: 182 NVQCEKKVRILR 193 + +V+++R Sbjct: 175 KLGKSGEVKVIR 186 >gi|88860592|ref|ZP_01135229.1| putative double-stranded RNA-binding protein with unique protein fold, with YrdC/RibB domain [Pseudoalteromonas tunicata D2] gi|88817187|gb|EAR27005.1| putative double-stranded RNA-binding protein with unique protein fold, with YrdC/RibB domain [Pseudoalteromonas tunicata D2] Length = 187 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 77/165 (46%), Gaps = 15/165 (9%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 MS+ D L + L+ G I PTE VYGL D N +A+ L IK+RP LI Sbjct: 1 MSVHDE--LTQCLNKLEQGGVICYPTEAVYGLGCDPDNESAVMALLAIKQRPVEKGLILI 58 Query: 64 VSDISMVKKHASVDPLSLHL---AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 + + + + VD + + A++F WPG +T ++ STT T T R Sbjct: 59 ADNYAQLLPY--VDDAKIPMDKRAEIFSAWPGAVTWIMPAKSTT--PKWLTGKFDTIAVR 114 Query: 119 VPC-GFTKKLIETYGHPLAIPSANRSGQI---SITNVKHILSSSI 159 V K+L + + PL SAN +GQ S+ K + ++++ Sbjct: 115 VTNHSVVKQLCQQFNKPLVSTSANLTGQAPVRSLDEAKAMFTNNV 159 >gi|313204812|ref|YP_004043469.1| translation factor sua5 [Paludibacter propionicigenes WB4] gi|312444128|gb|ADQ80484.1| translation factor SUA5 [Paludibacter propionicigenes WB4] Length = 187 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/143 (29%), Positives = 72/143 (50%), Gaps = 5/143 (3%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 K E L +G I PT+TV+GL D+ N TA++R+++IKKR ++ + + ++ + Sbjct: 7 KTLEVLRSGGVILYPTDTVWGLGCDATNETAVKRIFDIKKRADAKAMLVLIDNPGKLQSY 66 Query: 74 ASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETY 131 P ++ L ++ PLT++ ++ P A K+ RV F+KKL + Sbjct: 67 VDEVPDIAWDLIEMS-EKPLTIIYP--QARNLAPNLVAEDKSIGIRVTNEEFSKKLCAQF 123 Query: 132 GHPLAIPSANRSGQISITNVKHI 154 P+ SAN SG+ + N I Sbjct: 124 RKPIVSTSANVSGEPTPQNFSQI 146 >gi|29349351|ref|NP_812854.1| putative translation factor [Bacteroides thetaiotaomicron VPI-5482] gi|29341259|gb|AAO79048.1| conserved hypothetical protein, putative translation factor [Bacteroides thetaiotaomicron VPI-5482] Length = 187 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 68/150 (45%), Gaps = 15/150 (10%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 ++KAC+ ++ G I PT+TV+G+ D+ N A+ R+YEIKKR ++ +V Sbjct: 5 IKKACQVMNEGGVILYPTDTVWGIGCDATNEEAVHRVYEIKKRADSKAMLV------LVD 58 Query: 72 KHASVDPLSLHLAKLFW------PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124 VD + + W PLT++ ++ P A + RV F+ Sbjct: 59 SPVKVDFYVQDVPDVAWDLIEVADKPLTIIYS--GARNLAPNLLAEDGSVGIRVTNEEFS 116 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHI 154 ++L + + + SAN SGQ N I Sbjct: 117 RRLCQQFRKAIVSTSANISGQPGAANFTEI 146 >gi|296138965|ref|YP_003646208.1| Sua5/YciO/YrdC/YwlC family protein [Tsukamurella paurometabola DSM 20162] gi|296027099|gb|ADG77869.1| Sua5/YciO/YrdC/YwlC family protein [Tsukamurella paurometabola DSM 20162] Length = 216 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 52/198 (26%), Positives = 94/198 (47%), Gaps = 13/198 (6%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-VD 77 L G + +PT+T+YG+ D+ + A+ L K R P+ V + S V Sbjct: 24 LKGGHLVVMPTDTLYGIGCDAFDNRAVGDLLAAKHRGPDMPVGVLVGSWDTIDGLVSRVS 83 Query: 78 PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136 P + L FWPG ++LV++ + + T T R+P +L+ G P+A Sbjct: 84 PAARELTHAFWPGAVSLVVEQAPSLAWNLGDTRG--TVMLRMPLHPVAIELLREVG-PMA 140 Query: 137 IPSANRSGQ---ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 + SAN SG+ ++T+ + L S + + +DGG ++ + STIV++ + R+LR Sbjct: 141 VSSANVSGKPPAATMTDARDQLGDS----VEVYLDGGPAEHAVASTIVDLSGPQP-RVLR 195 Query: 194 PGGLEIETLKRAISVELE 211 G + + + V+ + Sbjct: 196 EGAVTSARIAEVLGVDAQ 213 >gi|88811389|ref|ZP_01126644.1| Putative translation factor, SUA5/yciO/yrdC-like protein [Nitrococcus mobilis Nb-231] gi|88791278|gb|EAR22390.1| Putative translation factor, SUA5/yciO/yrdC-like protein [Nitrococcus mobilis Nb-231] Length = 188 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/131 (35%), Positives = 59/131 (45%), Gaps = 8/131 (6%) Query: 18 FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77 L AG IA PTE VYGL D R A+ RL E+K R A LI + + ++ + Sbjct: 16 LLSAGGVIAYPTEAVYGLGCDPRRRDAVVRLLELKGRSARKGLILIAPEADWLAEY--MA 73 Query: 78 PLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGH 133 PLS +A WPGP+T V+ + I T T RV L +G Sbjct: 74 PLSEAVAAQMMASWPGPVTWVVPAAARAPIW--LTGGRGTIALRVTAHPVASALCRAFGG 131 Query: 134 PLAIPSANRSG 144 L SANR+G Sbjct: 132 ALVSTSANRAG 142 >gi|271502209|ref|YP_003335235.1| SUA5/yciO/yrdC domain-containing protein [Dickeya dadantii Ech586] gi|270345764|gb|ACZ78529.1| SUA5/yciO/yrdC domain protein [Dickeya dadantii Ech586] Length = 189 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 61/134 (45%), Gaps = 6/134 (4%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83 IA PTE V+GL D + A+ RL +K+RP LI ++ + + + LS + Sbjct: 22 IAYPTEAVFGLGCDPDSEVAVERLLALKQRPREKGLILIAANFQQLASYIELSALSDMQR 81 Query: 84 AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140 +F WPGP+T V+ + + T + RV +L +G PL SA Sbjct: 82 QTIFATWPGPVTWVIP--ARAETPDWLTGRFNSLAVRVSDHPLVAQLCLAFGKPLVSTSA 139 Query: 141 NRSGQISITNVKHI 154 N SGQ V+ + Sbjct: 140 NLSGQPPCRTVREV 153 >gi|120436628|ref|YP_862314.1| YrdC domain-containing protein [Gramella forsetii KT0803] gi|117578778|emb|CAL67247.1| protein containing YrdC domain [Gramella forsetii KT0803] Length = 189 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 7/137 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +R + L G I PT+TV+G+ D+ N A+ +++++KKR LIC VS+ M++ Sbjct: 8 VRNCIDVLKKGGIILYPTDTVWGIGCDATNANAVDKVFQLKKREESKALICLVSNFKMLE 67 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIH---PLSTANLKTACFRVPCGFTKKLI 128 ++ P + + + P T++ D +H L + + V F LI Sbjct: 68 QYVEDVPETAYDILKYAKKPTTVIYD----KPVHIAENLVSDDDSLGIRVVRDTFCSDLI 123 Query: 129 ETYGHPLAIPSANRSGQ 145 + PL SAN SGQ Sbjct: 124 KKLKRPLVSTSANVSGQ 140 >gi|169628535|ref|YP_001702184.1| hypothetical protein MAB_1444 [Mycobacterium abscessus ATCC 19977] gi|169240502|emb|CAM61530.1| Conserved hypothetical protein (Sua5/YciO/YRDC/ YwlC family protein?) [Mycobacterium abscessus] Length = 226 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 54/206 (26%), Positives = 94/206 (45%), Gaps = 7/206 (3%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 T + + A L AG + +PT+TVYGL D+ + A+ L K R P+ V Sbjct: 12 TRQSGIDAAVSALKAGELVVMPTDTVYGLGCDAFDSGAVTALLAAKGRGRDMPVGVLVGS 71 Query: 67 ISMVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 + P + L + FWPGPL++++ + L A + R+P Sbjct: 72 WHTIDGLVFAVPAAARELIEAFWPGPLSIIVRHAPSLSWD-LGDAQ-GSVMLRMPMHPVA 129 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 +L+ G P+A+ SAN SG+ + + ++ + +DGG +++G STIV++ Sbjct: 130 IELLRAVG-PMAVSSANVSGRPAALTAAEA-RGQLDDKVAVYLDGGQAELGAASTIVDLT 187 Query: 185 CEKKVRILRPGGLEIETLKRAISVEL 210 V I+R G + E + I ++ Sbjct: 188 GPAPV-IVREGPISREQIVEVIGGQV 212 >gi|317052438|ref|YP_004113554.1| Sua5/YciO/YrdC/YwlC family protein [Desulfurispirillum indicum S5] gi|316947522|gb|ADU66998.1| Sua5/YciO/YrdC/YwlC family protein [Desulfurispirillum indicum S5] Length = 202 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 73/169 (43%), Gaps = 8/169 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 DS + A E + G +A PT++ YG+ D N AI R+ IK+ PL S + Sbjct: 12 DSRQIAAAVEIMRNGGLVAYPTDSAYGIGCDILNKDAIARVRRIKQMHDAKPLTFICSSL 71 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTAN--LKTACFRVPCG-FT 124 S ++A + + K PGP T +LD T + P + N K R+P Sbjct: 72 SHASQYAIISDYAYRTMKHLIPGPYTFLLD---ATKLTPKAVQNPKRKRCGIRIPANDIC 128 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173 L+E G P+ +A G+ T + + + ++DGG S+ Sbjct: 129 MALVEELGRPIISTTAKVDGE--PTGDPWRIHQELEGMLDALVDGGYSE 175 >gi|49079254|gb|AAT49871.1| PA3199 [synthetic construct] Length = 210 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 50/198 (25%), Positives = 80/198 (40%), Gaps = 17/198 (8%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E + G I PT++ Y L TA+ R+ I++ + D+S + Sbjct: 17 VKQAVEIVRQGGVIVYPTDSSYALGCRIGEKTAVDRIRRIRQLDDKHNFTLVCRDLSELG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVP-CGFTKKL 127 +A VD L K PGP T +L +HP +T RVP C + L Sbjct: 77 VYAKVDTGLFRLLKAHTPGPYTFILSATREVPRMLLHP----KRRTIGLRVPNCPIARAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG---------ISKIGLES 178 +E G PL S G N + + + ++ LI+DGG IS + Sbjct: 133 LEELGEPLMSVSLIMPGSGEPLNDPYEMRQVLEHQVDLIVDGGYGGGEASTVISLTDTDP 192 Query: 179 TIVNVQCEKKVRILRPGG 196 ++ V C ++P G Sbjct: 193 EVIRVGCGDPAPFMQPAG 210 >gi|224026554|ref|ZP_03644920.1| hypothetical protein BACCOPRO_03311 [Bacteroides coprophilus DSM 18228] gi|224019790|gb|EEF77788.1| hypothetical protein BACCOPRO_03311 [Bacteroides coprophilus DSM 18228] Length = 188 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 15/143 (10%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + ++KACE + G I PT+TV+G+ D+ N A++R+YEIK+R ++ + Sbjct: 4 DEIKKACEVMQKGGVILYPTDTVWGIGCDATNEEAVKRVYEIKQRSDSKAMLV------L 57 Query: 70 VKKHASVDPLSLHLAKLFWP------GPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-G 122 V VD + + W PLT++ D ++ P A + RV Sbjct: 58 VDSPVKVDFYVQDVPSVAWDLIELTTKPLTVIYD--GARNLAPNLLAEDGSVGIRVTNEE 115 Query: 123 FTKKLIETYGHPLAIPSANRSGQ 145 F+K+L + + SAN SGQ Sbjct: 116 FSKQLCFRFRKAIVSTSANISGQ 138 >gi|76788852|ref|YP_327938.1| sua5/YciO/YrdC/YwlC family protein [Chlamydia trachomatis A/HAR-13] gi|76167382|gb|AAX50390.1| sua5/YciO/YrdC/YwlC family protein [Chlamydia trachomatis A/HAR-13] Length = 281 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 54/169 (31%), Positives = 80/169 (47%), Gaps = 13/169 (7%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-- 74 E + AG A PT+TVYGL V A +RL+ +K R + L +VS + ++ A Sbjct: 8 ESIKAGQVFAFPTDTVYGLGVSFHILDADQRLFALKHRSSQKALSVYVSSLEELEAVAQQ 67 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLIETYGH 133 S+ S + + F PGPLTL+ H KT FR V +++I+ G Sbjct: 68 SLGASSRKIIQKFLPGPLTLITK-------HNNPRFPQKTLGFRIVNHPIVQQIIQKVG- 119 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 P SAN SG S + + ++I +I G IGLEST+++ Sbjct: 120 PFLATSANLSGFPSAVSADEVKQDFPEEDIVMI--SGECSIGLESTVID 166 >gi|300691879|ref|YP_003752874.1| hypothetical protein RPSI07_2235 [Ralstonia solanacearum PSI07] gi|299078939|emb|CBJ51599.1| conserved protein of unknown function, translation factor domain (SUA5) [Ralstonia solanacearum PSI07] Length = 207 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 78/173 (45%), Gaps = 5/173 (2%) Query: 1 MQIMSITDSNAL-RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 QI T L R+A E + AG +A+PT++ Y LA + A+ RL ++ + Sbjct: 5 FQIHPTTPQGRLIRQAAEIIRAGGLVALPTDSCYALACHLDDKAAVERLRRVRGIDEKHH 64 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFR 118 L D+S + A VD + K PGP +L+ +T ++ LS + KT R Sbjct: 65 LTLMCRDLSELATFARVDNRQYRVVKTATPGPFVFLLE--ATKEVPRRLSHPSRKTIGLR 122 Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 VP L+ G PL + G + N + + + +++ L+IDGG Sbjct: 123 VPDHPIPLALMAELGEPLLSATLQLPGDDAPLNEAETIRARLERQLELVIDGG 175 >gi|326201500|ref|ZP_08191371.1| SUA5/yciO/yrdC domain [Clostridium papyrosolvens DSM 2782] gi|325988100|gb|EGD48925.1| SUA5/yciO/yrdC domain [Clostridium papyrosolvens DSM 2782] Length = 214 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 71/157 (45%), Gaps = 5/157 (3%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A E + G I +PT+ VY + D+ N A+ RL EI+K P PL + D + K+ Sbjct: 15 AGEAIKRGKVIVVPTDAVYAVVCDAFNKEAVERLREIRKSPQDKPL-SLIIDKKDIDKYC 73 Query: 75 SVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGH 133 + + + PG ++ +++ DI + N C TK + E G Sbjct: 74 HIKNETYKSIIDALLPGKVSFLIN--KKGDIFTDAVPNSDAICVFWQDNETKDVYEESGT 131 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 LAI SAN++G T ++ + S E+ L ID G Sbjct: 132 VLAISSANKAGFPEATTLEQAI-SFFEDEVELFIDSG 167 >gi|241767112|ref|ZP_04764882.1| SUA5 domain protein [Acidovorax delafieldii 2AN] gi|241362315|gb|EER58317.1| SUA5 domain protein [Acidovorax delafieldii 2AN] Length = 165 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 15/167 (8%) Query: 165 LIIDGGISKIGLESTIVNVQCEKKVRIL-RPGGLEIETLKRAISVE-LEYCVDETSTPQS 222 L++DGG +G+ESTIV+ C + V +L RPG + + A ++ L TP++ Sbjct: 2 LVLDGGPCAVGIESTIVD--CTRGVPVLLRPGAITRAQIAAACGLQPLSKEELPAHTPRA 59 Query: 223 PGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKL------- 275 G L++HYAP ++VRL + + + +I ++ +++ +L Sbjct: 60 SGTLEAHYAPAAKVRL--MDAAALQTALDLLGADAAHIAVYARTMPRTQSTRLVMRRMPD 117 Query: 276 --KEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + A LF ++ DD G I + P + +RL+RAAA Sbjct: 118 DAEATAQQLFAALRAFDDQGVKLIWIETPPATAAWEGVRDRLQRAAA 164 >gi|87124889|ref|ZP_01080736.1| hypothetical protein RS9917_02768 [Synechococcus sp. RS9917] gi|86167209|gb|EAQ68469.1| hypothetical protein RS9917_02768 [Synechococcus sp. RS9917] Length = 213 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 50/151 (33%), Positives = 73/151 (48%), Gaps = 16/151 (10%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 TDSNAL A + +PT+T+ LA P R+++++K+RP PLI ++ Sbjct: 17 TDSNALLHQLRMGGAAM---LPTDTLPALA---SLPEHARQIWQLKRRPLRKPLILMGAE 70 Query: 67 ISMVKKHAS--VDPLSLHLAKLFWPGPLTLVLDLLSTT--DIHPLSTANLKTACFRVP-C 121 + H + V + LA WPG LTLVL T +HP T R+P C Sbjct: 71 PESLLTHVAPEVRGEAAALASAHWPGALTLVLPASGPTVQHLHP----GAATLGLRIPDC 126 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVK 152 T+ L+ G PLA S NRSG+ + + + Sbjct: 127 APTRHLLSLSG-PLATTSINRSGEPAAQSAR 156 >gi|299141002|ref|ZP_07034140.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella oris C735] gi|298577968|gb|EFI49836.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella oris C735] Length = 189 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 5/151 (3%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV- 64 +T +R A E + G I PT+TV+G+ D+ N A+ ++Y IKKR LIC V Sbjct: 1 MTREEDIRNAVECMRKGGVILYPTDTVWGIGCDATNKEAVAKVYAIKKRDDSKALICLVD 60 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 SD + + +V ++ L P T++LD ++ A + R+ F Sbjct: 61 SDARLQRCFRNVPNVAWELLDAA-IKPTTVILD--DAVNVAENLVAEDGSLAMRITSEPF 117 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHI 154 +K+L + P+ SAN SG+ + N K I Sbjct: 118 SKELCYRFQKPVVSTSANVSGEPAAANYKDI 148 >gi|262040758|ref|ZP_06013989.1| Sua5/YciO/YrdC/YwlC family protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259041902|gb|EEW42942.1| Sua5/YciO/YrdC/YwlC family protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 190 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/125 (34%), Positives = 57/125 (45%), Gaps = 6/125 (4%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83 IA PTE V+G+ D + TA+ RL E+K+RP LI + +K + LS Sbjct: 23 IAYPTEAVFGVGCDPDSETAVMRLLELKQRPVEKGLILIAASFEQLKPYIDDSRLSDSQR 82 Query: 84 AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140 +F WPGP+T V T T + RV +L E YG PL SA Sbjct: 83 EAIFSCWPGPVTFVFPARPETPR--WLTGRFDSLAVRVTNHPLVIELCEAYGKPLVSTSA 140 Query: 141 NRSGQ 145 N +GQ Sbjct: 141 NLTGQ 145 >gi|333029267|ref|ZP_08457328.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides coprosuis DSM 18011] gi|332739864|gb|EGJ70346.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides coprosuis DSM 18011] Length = 199 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 79/159 (49%), Gaps = 10/159 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 ++KAC+ L G I PT+TV+G+ D+ N A++R+Y IK+R L+ V V Sbjct: 17 IKKACQVLRDGGVILYPTDTVWGIGCDATNAEAVKRVYAIKQRTDSKALLVLVDSPVKVD 76 Query: 72 KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIE 129 + P ++ L +L PLT++ D ++ P A+ + RV F+++L + Sbjct: 77 FYVEDIPSVAWDLIELT-EKPLTIIYD--GARNLAPNLLADDGSVGIRVSGEKFSQQLCQ 133 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 + + SAN SGQ + +N S I E+ ++D Sbjct: 134 RFRKAIVSTSANISGQPTPSNF-----SEISDEVKSLVD 167 >gi|254251991|ref|ZP_04945309.1| Sua5/YciO/YrdC/YwlC [Burkholderia dolosa AUO158] gi|124894600|gb|EAY68480.1| Sua5/YciO/YrdC/YwlC [Burkholderia dolosa AUO158] Length = 210 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 74/161 (45%), Gaps = 4/161 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E + G IA+PT++ Y LA + A+ R+ I+ L V D+S + Sbjct: 17 IKQAAEIVSKGGVIAMPTDSSYALACHLDDKDAVERVRRIRGLDEKQHLSLLVRDLSELA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKKLIE 129 A VD L K PGP +L +T ++ LS + KT RVP T L+E Sbjct: 77 NFAMVDNRQYRLIKSVTPGPYVFILQ--ATKEVPRRLSHPSRKTIGLRVPDHAITLALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 + G PL + N + + + K++ L+IDGG Sbjct: 135 SLGQPLLGTTLILPPDDDPLNDPEDIRARLEKQVDLVIDGG 175 >gi|161830974|ref|YP_001595974.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii RSA 331] gi|212277673|sp|A9N9G8|RIMN_COXBR RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|161762841|gb|ABX78483.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii RSA 331] Length = 186 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/148 (32%), Positives = 68/148 (45%), Gaps = 8/148 (5%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ A + L G IA PTE VYGL D N A+ +L IKKR I S+ Sbjct: 5 TQSINDAVKCLRQGGVIAYPTEAVYGLGCDPFNHDAVAQLLTIKKRSIKKGFILIASEWK 64 Query: 69 MVKKHAS-VDPLSLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 V+ +DP + LA++F WPGP T ++ + T T RV Sbjct: 65 QVEPLTEPIDPKA--LARVFDTWPGPFTWTFP--ASKEAPHWITGQHSTIAIRVTAHPLA 120 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVK 152 K L + + PL SAN+ G+ I +VK Sbjct: 121 KLLCQRFAGPLISSSANQEGEPPIRDVK 148 >gi|15604856|ref|NP_219640.1| SuA5 superfamily-related protein [Chlamydia trachomatis D/UW-3/CX] gi|237802566|ref|YP_002887760.1| hypothetical protein JALI_1361 [Chlamydia trachomatis B/Jali20/OT] gi|237804484|ref|YP_002888638.1| hypothetical protein CTB_1361 [Chlamydia trachomatis B/TZ1A828/OT] gi|255310937|ref|ZP_05353507.1| hypothetical protein Ctra62_00710 [Chlamydia trachomatis 6276] gi|255317238|ref|ZP_05358484.1| hypothetical protein Ctra6_00705 [Chlamydia trachomatis 6276s] gi|255348499|ref|ZP_05380506.1| hypothetical protein Ctra70_00720 [Chlamydia trachomatis 70] gi|255503040|ref|ZP_05381430.1| hypothetical protein Ctra7_00735 [Chlamydia trachomatis 70s] gi|255506712|ref|ZP_05382351.1| hypothetical protein CtraD_00725 [Chlamydia trachomatis D(s)2923] gi|3328537|gb|AAC67728.1| SuA5 Superfamily-related Protein [Chlamydia trachomatis D/UW-3/CX] gi|231272784|emb|CAX09690.1| conserved hypothetical protein [Chlamydia trachomatis B/TZ1A828/OT] gi|231273800|emb|CAX10584.1| conserved hypothetical protein [Chlamydia trachomatis B/Jali20/OT] gi|289525178|emb|CBJ14653.1| conserved hypothetical protein [Chlamydia trachomatis Sweden2] gi|296434726|gb|ADH16904.1| hypothetical protein E150_00725 [Chlamydia trachomatis E/150] gi|296435653|gb|ADH17827.1| hypothetical protein G9768_00705 [Chlamydia trachomatis G/9768] gi|296436576|gb|ADH18746.1| hypothetical protein G11222_00710 [Chlamydia trachomatis G/11222] gi|296437513|gb|ADH19674.1| hypothetical protein G11074_00705 [Chlamydia trachomatis G/11074] gi|296438444|gb|ADH20597.1| hypothetical protein E11023_00715 [Chlamydia trachomatis E/11023] gi|297140012|gb|ADH96770.1| hypothetical protein CTG9301_00705 [Chlamydia trachomatis G/9301] gi|297748267|gb|ADI50813.1| Sua5/YciO/YrdC/YwlC family protein [Chlamydia trachomatis D-EC] gi|297749147|gb|ADI51825.1| Sua5/YciO/YrdC/YwlC family protein [Chlamydia trachomatis D-LC] Length = 281 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 54/169 (31%), Positives = 80/169 (47%), Gaps = 13/169 (7%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-- 74 E + AG A PT+TVYGL V A +RL+ +K R + L +VS + ++ A Sbjct: 8 ESIKAGQVFAFPTDTVYGLGVSFHILDADQRLFALKHRSSQKALSVYVSSLEELEAVAQQ 67 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLIETYGH 133 S+ S + + F PGPLTL+ H KT FR V +++I+ G Sbjct: 68 SLGASSRKIIQKFLPGPLTLITK-------HNNPRFPQKTLGFRIVNHPIVQQIIQKVG- 119 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 P SAN SG S + + ++I +I G IGLEST+++ Sbjct: 120 PFLATSANLSGFPSAVSADEVKQDFPEEDIVMI--SGECSIGLESTVID 166 >gi|294631402|ref|ZP_06709962.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces sp. e14] gi|292834735|gb|EFF93084.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces sp. e14] Length = 215 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 58/212 (27%), Positives = 91/212 (42%), Gaps = 31/212 (14%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + LR+A + G + +PT+TVYG+ D+ + A+ L + K R P + + Sbjct: 14 ATGLREAASAVRRGELVVLPTDTVYGIGADAFSGDAVADLLDAKGRGRAMPTPVLIGSPN 73 Query: 69 MVKKHASVDPLS---LHLAKLFWPGPLTLV--------LDLLSTTDIHPLSTANLKTACF 117 + H V S L FWPG LTLV DL T T Sbjct: 74 TL--HGLVTDFSEQAWELVDAFWPGALTLVARHQPSLQWDLGDTR----------GTVAV 121 Query: 118 RVPCGFTKKLIETYGHPLAIPSANRSGQ---ISITNVKHILSSSICKEIPLIIDGGISKI 174 R+P + T P+A+ SAN +G + + +L S+ + +DGG + Sbjct: 122 RMPLHPVAIELLTEVGPMAVSSANLTGHPAPETCDAAQEMLGDSVS----VYLDGGPTPG 177 Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAI 206 + S+IV+V E V +LR G L E L++ + Sbjct: 178 NVPSSIVDVTREVPV-LLREGALSPEELRKVV 208 >gi|218702046|ref|YP_002409675.1| putative ribosome maturation factor [Escherichia coli IAI39] gi|218372032|emb|CAR19890.1| putative ribosome maturation factor [Escherichia coli IAI39] Length = 190 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 46/142 (32%), Positives = 68/142 (47%), Gaps = 10/142 (7%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++ A + L+ IA PTE V+G+ D + TA+ RL E+K+RP LI ++ Sbjct: 7 GDSIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYE 66 Query: 69 MVKKHASVDPLSLHLAK---LF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 +K + +D L A+ +F WPGP+T V +TT T + RV Sbjct: 67 QLKPY--IDDTMLTDAQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHP 122 Query: 123 FTKKLIETYGHPLAIPSANRSG 144 L + YG PL SAN SG Sbjct: 123 LVVALCQAYGKPLVSTSANLSG 144 >gi|270264336|ref|ZP_06192602.1| putative ribosome maturation factor [Serratia odorifera 4Rx13] gi|270041472|gb|EFA14570.1| putative ribosome maturation factor [Serratia odorifera 4Rx13] Length = 189 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 42/125 (33%), Positives = 59/125 (47%), Gaps = 6/125 (4%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83 IA PTE V+GL D + A+ L +K+RP LI +D S + + LS Sbjct: 22 IAYPTEAVFGLGCDPDSGQAVNALLALKQRPWEKGLILIAADYSQLTSYIDDGALSEQQR 81 Query: 84 AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140 A +F WPGP+T V+ + + L T + RV ++L +G PL SA Sbjct: 82 AAMFATWPGPVTWVIP--ARPETPRLLTGRFNSLAVRVSDHPLVQQLCRQFGKPLVSTSA 139 Query: 141 NRSGQ 145 N SGQ Sbjct: 140 NLSGQ 144 >gi|139439320|ref|ZP_01772762.1| Hypothetical protein COLAER_01778 [Collinsella aerofaciens ATCC 25986] gi|133775344|gb|EBA39164.1| Hypothetical protein COLAER_01778 [Collinsella aerofaciens ATCC 25986] Length = 247 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 60/229 (26%), Positives = 91/229 (39%), Gaps = 35/229 (15%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAV-----------DSRNP----------------- 42 A+ + E L G IPTETVYG+AV D+ P Sbjct: 18 AVERTAELLGRGGLALIPTETVYGVAVAVNAFSDAVPQDTSEPLPWPRDPQATVNGAAVP 77 Query: 43 ---TAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDL 98 T RR++ +K+R + V D + ++ P LA+ WPG LT+V+ Sbjct: 78 ALGTGYRRIFTLKQRELTQTVAWLVDDAEALDRYGVDIPNEARVLARRCWPGALTIVVKA 137 Query: 99 LSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSS 158 + A+ A + LI G PLA SAN G S + + Sbjct: 138 APCVPTF-MRAADDTVALRASASPVVQALIRACGSPLACTSANTHGAPSPASFAAV-EGR 195 Query: 159 ICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS 207 I + + + +D G + STIV+ Q ++ILR G L ++R +S Sbjct: 196 ILEGVDVAVDAGETPCRDASTIVSFQ-HGGLQILRQGALPASEIERVLS 243 >gi|88807794|ref|ZP_01123305.1| hypothetical protein WH7805_06526 [Synechococcus sp. WH 7805] gi|88787833|gb|EAR18989.1| hypothetical protein WH7805_06526 [Synechococcus sp. WH 7805] Length = 207 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 13/123 (10%) Query: 27 IPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV----DPLSLH 82 +PT+T+ LA P++ +++ +K+RP PLI +++S + +V D + Sbjct: 34 LPTDTLPALAC---TPSSAAQIWTLKQRPQDKPLILMAAEVSALLDLTTVIARED--ARP 88 Query: 83 LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSAN 141 LA +WPGPLTLVL T H T R+P C T+ L+ G PLA SAN Sbjct: 89 LADRYWPGPLTLVLPAEGTLTNH--LNPGQDTLGMRIPACAVTRSLLARCG-PLATTSAN 145 Query: 142 RSG 144 RSG Sbjct: 146 RSG 148 >gi|309781239|ref|ZP_07675976.1| Sua5/YciO/YrdC/YwlC family protein [Ralstonia sp. 5_7_47FAA] gi|308920060|gb|EFP65720.1| Sua5/YciO/YrdC/YwlC family protein [Ralstonia sp. 5_7_47FAA] Length = 207 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 76/173 (43%), Gaps = 5/173 (2%) Query: 1 MQIMSITDSNAL-RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 QI T L R+A E + G +A+PT++ Y LA + +A+ RL ++ + Sbjct: 5 FQIHPTTPQGRLIRQAVEIIRGGGLVALPTDSCYALACHLDDKSAVERLRRVRSIDEKHH 64 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFR 118 L D+S + A VD + K PGP +L+ +T ++ LS + KT R Sbjct: 65 LTLMCRDLSELATFARVDNKQYRVLKAATPGPFVFLLE--ATKEVPRRLSHPSRKTIGLR 122 Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 VP L+ G PL + G N + + K++ L+IDGG Sbjct: 123 VPEHAIPLALMAELGEPLLSATLQLPGDDEPLNEAETIRDRLEKQLELVIDGG 175 >gi|152972191|ref|YP_001337337.1| putative ribosome maturation factor [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|330002239|ref|ZP_08304250.1| Sua5/YciO/YrdC/YwlC family protein [Klebsiella sp. MS 92-3] gi|212288208|sp|A6TET6|RIMN_KLEP7 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|150957040|gb|ABR79070.1| putative RNA-binding protein with unique protein fold [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|328537378|gb|EGF63627.1| Sua5/YciO/YrdC/YwlC family protein [Klebsiella sp. MS 92-3] Length = 190 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/125 (34%), Positives = 57/125 (45%), Gaps = 6/125 (4%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83 IA PTE V+G+ D + TA+ RL E+K+RP LI + +K + LS Sbjct: 23 IAYPTEAVFGVGCDPDSETAVMRLLELKQRPVEKGLILIAASFEQLKPYIDDSRLSDSQR 82 Query: 84 AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140 +F WPGP+T V T T + RV +L E YG PL SA Sbjct: 83 EAIFSCWPGPVTFVFPARPETPR--WLTGRFDSLAVRVTNHPLVIELCEAYGKPLVSTSA 140 Query: 141 NRSGQ 145 N +GQ Sbjct: 141 NLTGQ 145 >gi|332533672|ref|ZP_08409531.1| Sua5 YciO YrdC YwlC family protein [Pseudoalteromonas haloplanktis ANT/505] gi|332036836|gb|EGI73297.1| Sua5 YciO YrdC YwlC family protein [Pseudoalteromonas haloplanktis ANT/505] Length = 187 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 79/178 (44%), Gaps = 11/178 (6%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L G I PTE VYGL D N A+ L IK+RP LI + + K+ VD Sbjct: 14 LTQGEVILYPTEAVYGLGCDPDNQQAVEALLAIKQRPVEKGLILIADNYGQLLKY--VDD 71 Query: 79 LSLHL---AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYG 132 + + A +F WP +T V+ ++ + T T RV T K+L + +G Sbjct: 72 AKIPMDKRADIFSSWPAAITWVMP--ASKNTPKWLTGQFDTIAVRVTNHPTVKRLCQEFG 129 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 PL SAN +GQ ++ +++ + +++ +D + STI + K R Sbjct: 130 KPLVSTSANLTGQETVISIEQA-KAQFAEQVGFYVDEPLGGNTQPSTIKDAMTGKIFR 186 >gi|224823451|ref|ZP_03696560.1| SUA5/yciO/yrdC domain protein [Lutiella nitroferrum 2002] gi|224603906|gb|EEG10080.1| SUA5/yciO/yrdC domain protein [Lutiella nitroferrum 2002] Length = 171 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 52/181 (28%), Positives = 80/181 (44%), Gaps = 18/181 (9%) Query: 18 FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77 L G +A TE+ +GL D N AIRR+ +K RP LI + ++ V+ + Sbjct: 1 MLQQGGVLAYSTESCFGLGCDPFNVAAIRRVLALKARPNHKGLIVIAASLAQVRPL--IR 58 Query: 78 PLS----LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYG 132 PLS LA+ +WPGP T +L ++ + PL RV G L G Sbjct: 59 PLSAAEEAELAR-YWPGPYTFLLP--ASPRVPPLLRGRHDKIAVRVTAHGEAAALCRALG 115 Query: 133 HPLAIPSANRSGQISITNV---KHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 L SANR+GQ S+ + +++ L + G I STI++ + + + Sbjct: 116 TALVSTSANRAGQTSLKTAQACRRAFGAAV-----LTLPGRIGGSRRPSTIIDFETGRVL 170 Query: 190 R 190 R Sbjct: 171 R 171 >gi|254166891|ref|ZP_04873745.1| Sua5/YciO/YrdC/YwlC family protein [Aciduliprofundum boonei T469] gi|197624501|gb|EDY37062.1| Sua5/YciO/YrdC/YwlC family protein [Aciduliprofundum boonei T469] Length = 180 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 42/123 (34%), Positives = 63/123 (51%), Gaps = 11/123 (8%) Query: 24 PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHL 83 P+ +PT+T+YGL + I ++Y+IK R + V++I M+ K A + P + L Sbjct: 12 PVVMPTDTLYGLCMSIDG--DINKIYKIKGRSIEKKIPVGVANIEMMGKIAEITPEAEKL 69 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANR 142 + F PGPLTLV L + L T R+P T L+E G P+ + SAN Sbjct: 70 IRAFMPGPLTLV---LRNKGVKWLG----DTVAVRIPAHTLTIYLMEKIG-PITLTSANI 121 Query: 143 SGQ 145 SG+ Sbjct: 122 SGE 124 >gi|121999106|ref|YP_001003893.1| Sua5/YciO/YrdC/YwlC family protein [Halorhodospira halophila SL1] gi|212288207|sp|A1WZH9|RIMN_HALHL RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|121590511|gb|ABM63091.1| translation factor SUA5 [Halorhodospira halophila SL1] Length = 191 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 72/166 (43%), Gaps = 13/166 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +R A L G +A PTE V+GL D RN A+ RL +K RP LI ++ + Sbjct: 13 VRHAAAELRQGGVVAYPTEAVWGLGCDPRNADAVARLLALKGRPERQGLILIAAESRQLA 72 Query: 72 KHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 ++ + PL A+ WPGP+T VL ++T + T RV L Sbjct: 73 RY--LAPLPAEWAETIQASWPGPMTWVLP--ASTRAPRWVSGGRDTLAVRVTAHPVAAAL 128 Query: 128 IETYGHPL----AIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169 +G L A PSA R + S+ V+ + I +P + G Sbjct: 129 CSAFGGALVSTSANPSARRPAR-SVAEVRRYFGTRIDALVPGRLGG 173 >gi|83748250|ref|ZP_00945276.1| Sua5/YciO/YrdC/YwlC family protein [Ralstonia solanacearum UW551] gi|207743518|ref|YP_002259910.1| rna-binding protein, yrdc [Ralstonia solanacearum IPO1609] gi|83725091|gb|EAP72243.1| Sua5/YciO/YrdC/YwlC family protein [Ralstonia solanacearum UW551] gi|206594916|emb|CAQ61843.1| rna-binding protein, yrdc [Ralstonia solanacearum IPO1609] Length = 207 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 78/173 (45%), Gaps = 5/173 (2%) Query: 1 MQIMSITDSNAL-RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 QI T L R+A E + AG +A+PT++ Y LA + A+ RL ++ + Sbjct: 5 FQIHPTTPQGRLIRQAAEIIRAGGLVALPTDSCYALACHLDDKAAVERLRRVRGIDEKHH 64 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFR 118 L D+S + A VD + K PGP +L+ +T ++ LS + KT R Sbjct: 65 LTLMCRDLSELATFARVDNKQYRVVKAATPGPFVFLLE--ATKEVPRRLSHPSRKTIGLR 122 Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 VP L+ G PL + G + N + + + +++ L+IDGG Sbjct: 123 VPEHPIPLALMAELGEPLLSATLQLPGDDAPLNEAETIRARLERQLELVIDGG 175 >gi|212632972|ref|YP_002309497.1| Sua5/YciO/YrdC/YwlC [Shewanella piezotolerans WP3] gi|212554456|gb|ACJ26910.1| Sua5/YciO/YrdC/YwlC [Shewanella piezotolerans WP3] Length = 187 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 76/182 (41%), Gaps = 13/182 (7%) Query: 16 CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75 + + G IA PTE VYGL D N AI L IK+RP LI + + + Sbjct: 10 ADIIKGGGVIAYPTEAVYGLGCDPDNDDAINHLLSIKQRPWQKGLILVAGEYQQLLPYID 69 Query: 76 VDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY 131 LS L A+ WPGP T ++ + + L T + + RV + L Sbjct: 70 ESQLSAEQLAFAQSKWPGPFTFIMP--AKPGLSTLLTGSFDSIAVRVTAHPDVQALCAAI 127 Query: 132 GHPLAIPSANRSG---QISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 P+ SAN SG +S+ VK + +I ++ G + STI++ + Sbjct: 128 NKPIVSTSANLSGLEPALSVETVKQQFNRAIFA----VVMGELGTQTAPSTIIDARSGNI 183 Query: 189 VR 190 +R Sbjct: 184 IR 185 >gi|207722877|ref|YP_002253311.1| rna-binding protein, yrdc [Ralstonia solanacearum MolK2] gi|206588061|emb|CAQ18641.1| rna-binding protein, yrdc [Ralstonia solanacearum MolK2] Length = 207 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 78/173 (45%), Gaps = 5/173 (2%) Query: 1 MQIMSITDSNAL-RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 QI T L R+A E + AG +A+PT++ Y LA + A+ RL ++ + Sbjct: 5 FQIHPTTPQGRLIRQAAEIIRAGGLVALPTDSCYALACHLDDKAAVERLRRVRGIDEKHH 64 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFR 118 L D+S + A VD + K PGP +L+ +T ++ LS + KT R Sbjct: 65 LTLMCRDLSELATFARVDNKQYRVVKAATPGPFVFLLE--ATKEVPRRLSHPSRKTIGLR 122 Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 VP L+ G PL + G + N + + + +++ L+IDGG Sbjct: 123 VPEHPIPLALMAELGEPLLSATLQLPGDDAPLNEAETIRARLERQLELVIDGG 175 >gi|198276895|ref|ZP_03209426.1| hypothetical protein BACPLE_03100 [Bacteroides plebeius DSM 17135] gi|198270420|gb|EDY94690.1| hypothetical protein BACPLE_03100 [Bacteroides plebeius DSM 17135] Length = 188 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 15/143 (10%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + ++KACE L G I PT+TV+G+ D+ N A++R++EIK+R ++ + Sbjct: 4 DEIKKACEVLQKGGVILYPTDTVWGIGCDATNEEAVKRVFEIKQRADSKAMLV------L 57 Query: 70 VKKHASVDPLSLHLAKLFWP------GPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-G 122 V VD + + W PLT++ D ++ P A + RV Sbjct: 58 VDSPVKVDFYVQDVPSVAWDLIEMTTKPLTIIYD--GARNLAPNLIAADGSVGIRVTSEE 115 Query: 123 FTKKLIETYGHPLAIPSANRSGQ 145 F+K+L + + SAN SGQ Sbjct: 116 FSKQLCFRFRKAIVSTSANISGQ 138 >gi|154705971|ref|YP_001425408.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii Dugway 5J108-111] gi|212277672|sp|A9KH21|RIMN_COXBN RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|154355257|gb|ABS76719.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii Dugway 5J108-111] Length = 186 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 53/165 (32%), Positives = 75/165 (45%), Gaps = 9/165 (5%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ A + L G IA PTE VYGL D N A+ +L IKKR I S+ Sbjct: 5 TQSINDAVKCLRQGGVIAYPTEAVYGLGCDPFNHDAVAQLLTIKKRSIKKGFILIASEWK 64 Query: 69 MVKKHAS-VDPLSLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 V+ +DP + LA++F WPGP T ++ + T T RV Sbjct: 65 QVEPLTEPIDPKA--LARVFDTWPGPFTWTFP--ASKEAPHWITGQHSTIAIRVTAHPLA 120 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169 K L + + PL SAN+ G I +VK IL +I I++G Sbjct: 121 KLLCQRFAGPLISSSANQEGGPPIRDVK-ILRLVFGNKIDKILEG 164 >gi|53712278|ref|YP_098270.1| hypothetical protein BF0986 [Bacteroides fragilis YCH46] gi|60680456|ref|YP_210600.1| putative Sua5/yciO/yrdC family protein [Bacteroides fragilis NCTC 9343] gi|253563683|ref|ZP_04841140.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|265762469|ref|ZP_06091037.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|52215143|dbj|BAD47736.1| conserved hypothetical protein [Bacteroides fragilis YCH46] gi|60491890|emb|CAH06649.1| putative Sua5/yciO/yrdC family protein [Bacteroides fragilis NCTC 9343] gi|251947459|gb|EES87741.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|263255077|gb|EEZ26423.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] Length = 204 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 54/194 (27%), Positives = 87/194 (44%), Gaps = 11/194 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSDISMV 70 L++ + L+ G I PT+T+Y + AI R+ IK+ P N L D+S + Sbjct: 15 LQRIVDLLNDGGLIIYPTDTMYAIGCHGLKERAIERICRIKEIDPKKNNLSIICYDLSSI 74 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 ++A VD L K PGP T + L+ T+ P N K R+P +++ Sbjct: 75 SEYAKVDNNIFKLMKRNLPGPFTFI---LNGTNRLPKIFRNRKEVGIRMPDNSIIREIAR 131 Query: 130 TYGHPLAIPSA--NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCE 186 P+ + + I ++ + + L+IDGGI G+E ST+VN E Sbjct: 132 LLDAPIMTTTLPHDEHEDIEYVTDPELIDEKLGDVVDLVIDGGIG--GIEPSTVVNC-TE 188 Query: 187 KKVRILRPGGLEIE 200 + I+R G E+E Sbjct: 189 GEAAIVRQGKGELE 202 >gi|241662683|ref|YP_002981043.1| Sua5/YciO/YrdC/YwlC family protein [Ralstonia pickettii 12D] gi|240864710|gb|ACS62371.1| Sua5/YciO/YrdC/YwlC family protein [Ralstonia pickettii 12D] Length = 207 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 77/173 (44%), Gaps = 5/173 (2%) Query: 1 MQIMSITDSNAL-RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 QI T L R+A E + +G +A+PT++ Y LA + +A+ RL ++ + Sbjct: 5 FQIHPTTPQGRLIRQAVEIIRSGGLVALPTDSCYALACHLDDKSAVERLRRVRGIDEKHH 64 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFR 118 L D+S + A VD + K PGP +L+ +T ++ LS + KT R Sbjct: 65 LTLMCRDLSELATFARVDNKQYRVLKAATPGPFVFLLE--ATKEVPRRLSHPSRKTIGLR 122 Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 VP L+ G PL + G N + + K++ L+IDGG Sbjct: 123 VPEHAIPLALMAELGEPLLSATLQLPGDDEPLNEAETIRDRLEKQLELVIDGG 175 >gi|300704489|ref|YP_003746092.1| hypothetical protein RCFBP_20293 [Ralstonia solanacearum CFBP2957] gi|299072153|emb|CBJ43485.1| conserved protein of unknown function, translation factor domain (SUA5) [Ralstonia solanacearum CFBP2957] Length = 207 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 78/173 (45%), Gaps = 5/173 (2%) Query: 1 MQIMSITDSNAL-RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 QI T L R+A E + AG +A+PT++ Y LA + A+ RL ++ + Sbjct: 5 FQIHPTTPQGRLIRQAAEIIRAGGLVALPTDSCYALACHLDDKAAVERLRRVRGIDEKHH 64 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFR 118 L D+S + A VD + K PGP +L+ +T ++ LS + KT R Sbjct: 65 LTLMCRDLSELATFARVDNKQYRVVKAATPGPFVFLLE--ATKEVPRRLSHPSRKTIGLR 122 Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 VP L+ G PL + G + N + + + +++ L+IDGG Sbjct: 123 VPEHPIPLALMAELGEPLLSATLQLPGDDAPLNEAETIRARLERQLELVIDGG 175 >gi|238792973|ref|ZP_04636603.1| Ribosomal modification protein RimN [Yersinia intermedia ATCC 29909] gi|238727827|gb|EEQ19351.1| Ribosomal modification protein RimN [Yersinia intermedia ATCC 29909] Length = 190 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 47/145 (32%), Positives = 67/145 (46%), Gaps = 14/145 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 +S AL L +A PTE V+GL D + A+ L +K+RP LI ++ Sbjct: 6 NSGALSDVLRALQQEEVVAYPTEAVFGLGCDPDSEKAVNALLALKQRPWQKGLILIAANY 65 Query: 68 SMVKKHASVDPLSLHLAK---LF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRV--- 119 +K + VD +L +A+ LF WPGP+T V+ + T T + RV Sbjct: 66 EQLKPY--VDDSTLSMAQRETLFSCWPGPVTWVIPACANTPR--WLTGTFGSLAVRVSDH 121 Query: 120 PCGFTKKLIETYGHPLAIPSANRSG 144 P ++L YG PL SAN SG Sbjct: 122 P--LVQQLCSQYGKPLVSTSANLSG 144 >gi|114321780|ref|YP_743463.1| SUA5/yciO/yrdC-like protein [Alkalilimnicola ehrlichii MLHE-1] gi|122310777|sp|Q0A5B4|RIMN_ALHEH RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|114228174|gb|ABI57973.1| translation factor SUA5 [Alkalilimnicola ehrlichii MLHE-1] Length = 190 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 75/182 (41%), Gaps = 6/182 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +R+ L AG +A PTE VYGL D +P A+ L +K+R LI S +S + Sbjct: 11 IRQCAARLQAGGVVAYPTEAVYGLGCDPGDPAAVATLLTLKRRDPGKGLILIASRVSQLS 70 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETY 131 PL WPGP T +L T ++ K A L E + Sbjct: 71 PWLGDAPLP-QAVLASWPGPNTWLLPAAPHTPAW-ITGGRAKVAVRVTAHPVAAALCEAF 128 Query: 132 GHPLAIPSANRSGQI---SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 G + SANR GQ S T V+ L + E+ I+ G + + + I + + Sbjct: 129 GGAIVSTSANRDGQPPARSATQVRTRLGAE-AAELADILPGPVDRSARPTAIRDAESGAV 187 Query: 189 VR 190 +R Sbjct: 188 IR 189 >gi|289596430|ref|YP_003483126.1| Sua5/YciO/YrdC/YwlC family protein [Aciduliprofundum boonei T469] gi|289534217|gb|ADD08564.1| Sua5/YciO/YrdC/YwlC family protein [Aciduliprofundum boonei T469] Length = 189 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 42/123 (34%), Positives = 63/123 (51%), Gaps = 11/123 (8%) Query: 24 PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHL 83 P+ +PT+T+YGL + I ++Y+IK R + V++I M+ K A + P + L Sbjct: 21 PVVMPTDTLYGLCMSIDG--DINKIYKIKGRSIEKKIPVGVANIEMMGKIAEITPEAEKL 78 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANR 142 + F PGPLTLV L + L T R+P T L+E G P+ + SAN Sbjct: 79 IRAFMPGPLTLV---LRNKGVKWLG----DTVAVRIPAHTLTIYLMEKIG-PITLTSANI 130 Query: 143 SGQ 145 SG+ Sbjct: 131 SGE 133 >gi|74318478|ref|YP_316218.1| translation factor SUA5 [Thiobacillus denitrificans ATCC 25259] gi|123611282|sp|Q3SG43|RIMN_THIDA RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|74057973|gb|AAZ98413.1| probable Sua5/YciO/YrdC family protein [Thiobacillus denitrificans ATCC 25259] Length = 188 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 47/178 (26%), Positives = 76/178 (42%), Gaps = 12/178 (6%) Query: 18 FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASV 76 +L G IA PTE+ YGL D RN A+RRL +K R A ++ ++ ++ Sbjct: 17 YLRRGGVIAYPTESCYGLGCDPRNAAALRRLIRLKGRDAGKGMLLIADRYRRLQPFVGAL 76 Query: 77 DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPL 135 P + WPGP+T V+ ++ P T T RV L + G L Sbjct: 77 SPTGRARMRRSWPGPVTWVVP--ASRRCPPELTGGRTTVAVRVTAHRPAAALCRSLGTAL 134 Query: 136 AIPSANRSGQI---SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 SAN+SG + + + + + ++DG I ST++++ K +R Sbjct: 135 VSTSANKSGHTPAKTAAQCRRMFGARV-----RVVDGRIGTRRRPSTLIDLATGKILR 187 >gi|161506044|ref|YP_001573156.1| putative ribosome maturation factor [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160867391|gb|ABX24014.1| hypothetical protein SARI_04225 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 200 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 70/162 (43%), Gaps = 7/162 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ A + L+ IA PTE V+G+ D + TA+ RL E+K+RP LI + Sbjct: 17 TGSIAAAVDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLELKQRPVDKGLILIAASFE 76 Query: 69 MVKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 +K + L+ K WPGP+T V +TT T + RV Sbjct: 77 QLKPYIDDSILTTAQRKAVFDCWPGPVTFVFPASATT--PRWLTGRFDSLAVRVTDHPLV 134 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLI 166 L YG PL SAN SG V+ + + + P++ Sbjct: 135 VALCNAYGKPLVSTSANLSGLPPCRTVEEV-RAQFGDDFPMV 175 >gi|283788082|ref|YP_003367947.1| hypothetical protein ROD_45391 [Citrobacter rodentium ICC168] gi|282951536|emb|CBG91235.1| conserved hypothetical protein [Citrobacter rodentium ICC168] Length = 190 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 67/142 (47%), Gaps = 10/142 (7%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++++ A E L+ IA PTE V+G+ D + TA+ RL +K+RP LI + Sbjct: 7 TDSIAAAVEVLNNENVIAYPTEAVFGVGCDPDSETAVNRLLALKQRPVDKGLILIAASFD 66 Query: 69 MVKKHASVDPLSLHLAK---LF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 +K + +D L A+ +F WPGP+T V +TT T + RV Sbjct: 67 QLKPY--IDDSMLTEARREAVFARWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHP 122 Query: 123 FTKKLIETYGHPLAIPSANRSG 144 L E YG PL SAN SG Sbjct: 123 LVVALCEAYGKPLVSTSANLSG 144 >gi|242280257|ref|YP_002992386.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio salexigens DSM 2638] gi|242123151|gb|ACS80847.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio salexigens DSM 2638] Length = 202 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 55/203 (27%), Positives = 93/203 (45%), Gaps = 20/203 (9%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL---ICHVSDISM 69 ++A L G + PTET++ + D+ + A R+ IK RP PL I + + + Sbjct: 4 QEAVNILRTGGVLVYPTETLFAIGADAMDERAANRVALIKGRPVSKPLPLIIGSIDQLDL 63 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK--TACFRVPCGFTKKL 127 V + SV P L L K FWPGPL++ L+ + P + + + T+ +L Sbjct: 64 VTE--SVSPELLKLTKKFWPGPLSI---LVKAREELPSAVKDSRGYTSVRWTDHPRAAEL 118 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS-----KIGLESTIVN 182 PL SAN SG+ +++ + E+ ++++G + K G ST+V Sbjct: 119 CLKAHAPLIATSANMSGKPGTG-----IAAELDAELTIMVEGVYTPDPGPKGGNPSTVVE 173 Query: 183 VQCEKKVRILRPGGLEIETLKRA 205 + K++I R G + E L A Sbjct: 174 PLADNKIKIFRDGVVTREQLTNA 196 >gi|167586772|ref|ZP_02379160.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia ubonensis Bu] Length = 210 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 76/161 (47%), Gaps = 4/161 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E ++ G IA+PT++ Y LA + A+ R+ I+ L V D+S + Sbjct: 17 IKQAVEIVNKGGVIAMPTDSSYALACHLDDKDAVERVRRIRGLDDRQHLSLLVRDLSELA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKKLIE 129 A VD L K PGP +L +T ++ LS + KT RVP T L+E Sbjct: 77 NFAMVDNRQYRLIKSVTPGPYVFILQ--ATKEVPRRLSHPSRKTIGLRVPEHAITLALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 + G PL + + N + + + K++ L+IDGG Sbjct: 135 SLGQPLLGTTLILPPEEEPLNDPEDIRARLEKQVDLVIDGG 175 >gi|206576981|ref|YP_002236315.1| Sua5/YciO/YrdC/YwlC family protein [Klebsiella pneumoniae 342] gi|288933304|ref|YP_003437363.1| SUA5/yciO/yrdC domain protein [Klebsiella variicola At-22] gi|290512106|ref|ZP_06551474.1| ribosome maturation factor rimN [Klebsiella sp. 1_1_55] gi|206566039|gb|ACI07815.1| Sua5/YciO/YrdC/YwlC family protein [Klebsiella pneumoniae 342] gi|288888033|gb|ADC56351.1| SUA5/yciO/yrdC domain protein [Klebsiella variicola At-22] gi|289775896|gb|EFD83896.1| ribosome maturation factor rimN [Klebsiella sp. 1_1_55] Length = 190 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/125 (34%), Positives = 57/125 (45%), Gaps = 6/125 (4%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83 IA PTE V+G+ D + TA+ RL E+K+RP LI + +K + LS Sbjct: 23 IAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAASFEQLKPYVDDSRLSDSQR 82 Query: 84 AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140 +F WPGP+T V T T + RV +L E YG PL SA Sbjct: 83 DAIFSCWPGPVTFVFPARPETPR--WLTGRFDSLAVRVTNHPLVIELCEAYGKPLVSTSA 140 Query: 141 NRSGQ 145 N +GQ Sbjct: 141 NLTGQ 145 >gi|294673011|ref|YP_003573627.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella ruminicola 23] gi|294473050|gb|ADE82439.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella ruminicola 23] Length = 194 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 8/148 (5%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV-SDI 67 + +++A E + G I PT+TV+G+ D+ N A++R+YEIK+R LIC V SD Sbjct: 4 EDDIKQAIETMRKGGVILYPTDTVWGIGCDATNAEAVKRVYEIKQREDSKALICLVDSDA 63 Query: 68 SMVKKHASVDPLSLHLAKLFWPG----PLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 M + +V ++ L P TL+LD ++ P A + R+ Sbjct: 64 RMQRYFRNVPDVAWQLIDSLKEATDAKPTTLILD--GAINLAPNLIAEDGSLGIRITNEP 121 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITN 150 F+K+L + + SAN SG+ + N Sbjct: 122 FSKELCFRFQKAIVSTSANISGEPAAQN 149 >gi|56752239|ref|YP_172940.1| hypothetical protein syc2230_c [Synechococcus elongatus PCC 6301] gi|56687198|dbj|BAD80420.1| hypothetical protein [Synechococcus elongatus PCC 6301] Length = 202 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 54/171 (31%), Positives = 80/171 (46%), Gaps = 25/171 (14%) Query: 21 AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80 AG I+ PT+T+ LAV P ++Y +K+RP+ PLI + + + A P Sbjct: 15 AGQVISFPTDTLPALAV---QPDQAAQIYRLKQRPSEKPLILMAATAAELWPFAQGSPED 71 Query: 81 LH----LAKLFWPGPLTLVL---DLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYG 132 +A +WPG LTLVL D L +PL +++ +P C ++++ G Sbjct: 72 QAQWNAIANQYWPGALTLVLPASDRLPAA-ANPLDRSSIG---LHIPACALARQILAETG 127 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIP----LIIDGGISKIGLEST 179 PLA SANRSG+ ++ N +I E P L D GL ST Sbjct: 128 -PLATTSANRSGEPALLN-----PDAIAAEFPEVTVLAEDPWPDPSGLAST 172 >gi|157148857|ref|YP_001456176.1| putative ribosome maturation factor [Citrobacter koseri ATCC BAA-895] gi|157086062|gb|ABV15740.1| hypothetical protein CKO_04695 [Citrobacter koseri ATCC BAA-895] Length = 200 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 67/150 (44%), Gaps = 6/150 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++A+ A L IA PTE V+G+ D + TA+ RL E+K+RP LI ++ Sbjct: 17 TDAIAAAVAVLHKECVIAYPTEAVFGVGCDPDSETAVNRLLELKQRPVEKGLILIAANFE 76 Query: 69 MVKKHASVDPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 +K + L+ +F WPGP+T V +TT T + RV Sbjct: 77 QLKPYIDDSMLTDTQREAIFACWPGPVTFVFPAPATTPR--WLTGRFDSLAVRVTDHPLV 134 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHI 154 L + YG PL SAN +G V+ + Sbjct: 135 VSLCQAYGKPLVSTSANLTGLPPCRTVEEV 164 >gi|228471567|ref|ZP_04056342.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga gingivalis ATCC 33624] gi|228277143|gb|EEK15823.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga gingivalis ATCC 33624] Length = 186 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 6/157 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++ FL +G I PT+T++GL D + I+R+ IK+R I VS M++ Sbjct: 7 VKETLSFLRSGKVILYPTDTIWGLGCDPYSREGIQRIQAIKQRDIRKSFILLVSSYQMLQ 66 Query: 72 KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130 ++ +V +L L K P + D H A+ A V F K LI+ Sbjct: 67 RYVAVSQETLAFLDKQERPTSVIYT----QVYDSHLPEAADHSLAFRVVKDPFCKALIDA 122 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 + PL SAN SG+ S N ++S I K + I+ Sbjct: 123 FDAPLVSTSANISGEESPKNFS-LISEQIKKSVDYIV 158 >gi|126178386|ref|YP_001046351.1| Sua5/YciO/YrdC/YwlC family protein [Methanoculleus marisnigri JR1] gi|125861180|gb|ABN56369.1| translation factor SUA5 [Methanoculleus marisnigri JR1] Length = 191 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 87/186 (46%), Gaps = 18/186 (9%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 + PTETVYGL D+ + A+ R+YE K RP P+ VSD+ M+ A VD + Sbjct: 17 VVYPTETVYGLGADALSEDAVMRVYEAKNRPLGKPISIAVSDMEMLAAVAVVDDAARAFI 76 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANRS 143 + F PGP+T++L S + + T R P +I P+ SAN S Sbjct: 77 ERFLPGPVTVLLPAKSC--LPAVLTGGTGLIGVRWPDHEIAAAIIARLDAPITSTSANIS 134 Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG-GLE---- 198 I T + S+ + ++DGG G ST+V++ R+LR G G E Sbjct: 135 DDIPPTRPDEV---SVPHD--YLVDGG-ELPGTPSTVVDLPAR---RVLRKGAGWEAVEA 185 Query: 199 -IETLK 203 +E+LK Sbjct: 186 FLESLK 191 >gi|82778580|ref|YP_404929.1| putative ribosome maturation factor [Shigella dysenteriae Sd197] gi|123561454|sp|Q32B67|RIMN_SHIDS RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|81242728|gb|ABB63438.1| conserved hypothetical protein [Shigella dysenteriae Sd197] Length = 190 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 67/142 (47%), Gaps = 10/142 (7%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +A+ A + L+ IA PTE V+G+ D + TA+ RL E+K RP LI ++ Sbjct: 7 GDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKLRPVDKGLILIAANYE 66 Query: 69 MVKKHASVDPLSLHLAK---LF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 +K + +D L A+ +F WPGP+T V +TT T + RV Sbjct: 67 QLKPY--IDDTMLTDAQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHP 122 Query: 123 FTKKLIETYGHPLAIPSANRSG 144 L + YG PL SAN SG Sbjct: 123 LVVALCQAYGKPLVSTSANLSG 144 >gi|256372569|ref|YP_003110393.1| SUA5/yciO/yrdC domain protein [Acidimicrobium ferrooxidans DSM 10331] gi|256009153|gb|ACU54720.1| SUA5/yciO/yrdC domain protein [Acidimicrobium ferrooxidans DSM 10331] Length = 225 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 57/201 (28%), Positives = 91/201 (45%), Gaps = 14/201 (6%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 S+ A R+A LD G + +PT+TV GL + + A+ R+ +K R P V Sbjct: 15 SLEGVEAFRRAATILDGGSVLLMPTDTVPGLVGSATSRRALERIAVLKGRSTTTPPPVLV 74 Query: 65 SDISMVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 I +A S L WPGP++ V+D + D+ + ++ RVP Sbjct: 75 GSIDEALAYAEPRRRSRLRALGALWPGPISAVVDAPTLADV---VNPSGRSVALRVPD-- 129 Query: 124 TKKLIE-TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLI--IDGGISKIG----L 176 + L E G PLA SAN G + ++V L+ + P+ + G + G + Sbjct: 130 VEWLAELATGRPLAASSANWHGVATPSDVDTALADLVAHGSPVAGRLAGVLWAPGPSGRV 189 Query: 177 ESTIVNVQCEKKVRILRPGGL 197 STIV++ +VR+LR G + Sbjct: 190 ASTIVDLTG-PQVRVLRQGAV 209 >gi|301161990|emb|CBW21534.1| putative Sua5/yciO/yrdC family protein [Bacteroides fragilis 638R] Length = 204 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 54/194 (27%), Positives = 87/194 (44%), Gaps = 11/194 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSDISMV 70 L++ + L+ G I PT+T+Y + AI R+ IK+ P N L D+S + Sbjct: 15 LQRIVDLLNDGGLIIYPTDTMYAIGCHGLKERAIERICRIKEIDPKKNNLSIICYDLSSI 74 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 ++A VD L K PGP T + L+ T+ P N K R+P +++ Sbjct: 75 SEYAKVDNNIFKLMKRNLPGPFTFI---LNGTNRLPKIFRNRKEVGIRMPDNSIIREIAR 131 Query: 130 TYGHPLAIPS--ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCE 186 P+ + + I ++ + + L+IDGGI G+E ST+VN E Sbjct: 132 LLDAPIMTTTLPYDEHEDIEYVTDPELIDEKLGDVVDLVIDGGIG--GIEPSTVVNC-TE 188 Query: 187 KKVRILRPGGLEIE 200 + I+R G E+E Sbjct: 189 GEAVIVRQGKGELE 202 >gi|212709015|ref|ZP_03317143.1| hypothetical protein PROVALCAL_00047 [Providencia alcalifaciens DSM 30120] gi|212688381|gb|EEB47909.1| hypothetical protein PROVALCAL_00047 [Providencia alcalifaciens DSM 30120] Length = 189 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 65/152 (42%), Gaps = 8/152 (5%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 IA PTE V+GL D + A+ +L +K+RP LI + +K + L+ Sbjct: 22 IAYPTEAVFGLGCDPDSEIAVNQLLALKQRPWEKGLILIADNYEQLKNYVDDSQLNEQQR 81 Query: 85 KLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSA 140 + WPGP+T V+ TT T T RV K L YG P+ SA Sbjct: 82 QAMFATWPGPVTWVIPAKKTT--PKWLTGQFDTLAVRVTNHELVKALCSQYGKPIVSTSA 139 Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGIS 172 N SG + +++ K+ ++DG + Sbjct: 140 NLSGLEPCRTTEEVIAQ--FKDTVPVLDGDVG 169 >gi|212277726|sp|A8AQH7|RIMN_CITK8 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN Length = 190 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 68/152 (44%), Gaps = 10/152 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++A+ A L IA PTE V+G+ D + TA+ RL E+K+RP LI ++ Sbjct: 7 TDAIAAAVAVLHKECVIAYPTEAVFGVGCDPDSETAVNRLLELKQRPVEKGLILIAANFE 66 Query: 69 MVKKHASVDPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRV---PCG 122 +K + L+ +F WPGP+T V +TT T + RV P Sbjct: 67 QLKPYIDDSMLTDTQREAIFACWPGPVTFVFPAPATTPR--WLTGRFDSLAVRVTDHP-- 122 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHI 154 L + YG PL SAN +G V+ + Sbjct: 123 LVVSLCQAYGKPLVSTSANLTGLPPCRTVEEV 154 >gi|53719872|ref|YP_108858.1| hypothetical protein BPSL2262 [Burkholderia pseudomallei K96243] gi|53723777|ref|YP_103302.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei ATCC 23344] gi|76812077|ref|YP_334088.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 1710b] gi|121599611|ref|YP_993496.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei SAVP1] gi|124385702|ref|YP_001029074.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei NCTC 10229] gi|126440920|ref|YP_001059595.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 668] gi|126450648|ref|YP_001081004.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei NCTC 10247] gi|126453661|ref|YP_001066876.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 1106a] gi|134277533|ref|ZP_01764248.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 305] gi|167001768|ref|ZP_02267560.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei PRL-20] gi|167720315|ref|ZP_02403551.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei DM98] gi|167816526|ref|ZP_02448206.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 91] gi|167824921|ref|ZP_02456392.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 9] gi|167846438|ref|ZP_02471946.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei B7210] gi|167895016|ref|ZP_02482418.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 7894] gi|167903401|ref|ZP_02490606.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei NCTC 13177] gi|167911654|ref|ZP_02498745.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 112] gi|167919652|ref|ZP_02506743.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei BCC215] gi|217420441|ref|ZP_03451946.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 576] gi|226198927|ref|ZP_03794490.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei Pakistan 9] gi|237812987|ref|YP_002897438.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei MSHR346] gi|238561611|ref|ZP_00441723.2| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei GB8 horse 4] gi|242315443|ref|ZP_04814459.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 1106b] gi|254177849|ref|ZP_04884504.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei ATCC 10399] gi|254184394|ref|ZP_04890984.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 1655] gi|254191427|ref|ZP_04897931.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei Pasteur 52237] gi|254195745|ref|ZP_04902171.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei S13] gi|254200256|ref|ZP_04906622.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei FMH] gi|254209334|ref|ZP_04915680.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei JHU] gi|254261445|ref|ZP_04952499.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 1710a] gi|254297059|ref|ZP_04964512.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 406e] gi|254357996|ref|ZP_04974269.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei 2002721280] gi|52210286|emb|CAH36265.1| conserved hypothetical protein [Burkholderia pseudomallei K96243] gi|52427200|gb|AAU47793.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei ATCC 23344] gi|76581530|gb|ABA51005.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 1710b] gi|121228421|gb|ABM50939.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei SAVP1] gi|124293722|gb|ABN02991.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei NCTC 10229] gi|126220413|gb|ABN83919.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 668] gi|126227303|gb|ABN90843.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 1106a] gi|126243518|gb|ABO06611.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei NCTC 10247] gi|134251183|gb|EBA51262.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 305] gi|147749852|gb|EDK56926.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei FMH] gi|147750107|gb|EDK57178.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei JHU] gi|148027123|gb|EDK85144.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei 2002721280] gi|157807680|gb|EDO84850.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 406e] gi|157939099|gb|EDO94769.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei Pasteur 52237] gi|160698888|gb|EDP88858.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei ATCC 10399] gi|169652490|gb|EDS85183.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei S13] gi|184214925|gb|EDU11968.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 1655] gi|217395853|gb|EEC35870.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 576] gi|225929027|gb|EEH25051.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei Pakistan 9] gi|237505250|gb|ACQ97568.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei MSHR346] gi|238524204|gb|EEP87638.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei GB8 horse 4] gi|242138682|gb|EES25084.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 1106b] gi|243062460|gb|EES44646.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei PRL-20] gi|254220134|gb|EET09518.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 1710a] Length = 209 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 73/161 (45%), Gaps = 4/161 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +R+A E + G IA+PT++ Y LA + A+ R+ I+ L V D+S + Sbjct: 17 VRQAAEIVRGGGVIALPTDSSYALACHLDDKDAVERVRRIRGLDDKQHLSLLVRDLSELA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129 A VD L K PGP +L +T ++ LS + KT RVP T L+E Sbjct: 77 TFAMVDNRQYRLIKSVTPGPYVFILQ--ATKEVPRRLSHPSRKTIGLRVPAHAITLALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 G PL + N + + + K++ L+IDGG Sbjct: 135 ALGQPLLGTTLILPPDDEPLNDPEEIRARLEKQVDLVIDGG 175 >gi|167563323|ref|ZP_02356239.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia oklahomensis EO147] Length = 209 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 73/161 (45%), Gaps = 4/161 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E + G IA+PT++ Y LA + A+ R+ I+ L V D+S + Sbjct: 17 IKQAAEIVRGGGVIALPTDSSYALACHLDDKDAVERVRRIRGLDEKQHLSLLVRDLSELA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129 A VD L K PGP +L +T ++ LS + KT RVP T L+E Sbjct: 77 AFAMVDNRQYRLIKSVTPGPYVFILQ--ATKEVPRRLSHPSRKTIGLRVPAHAITLALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 G PL + S N + + + K+ L+IDGG Sbjct: 135 ALGQPLLGTTLILSPDDEPLNDPEEIRTRLEKQADLVIDGG 175 >gi|153876037|ref|ZP_02003559.1| Sua5/YciO/YrdC/YwlC family protein [Beggiatoa sp. PS] gi|152067499|gb|EDN66441.1| Sua5/YciO/YrdC/YwlC family protein [Beggiatoa sp. PS] Length = 184 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 75/165 (45%), Gaps = 7/165 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++A +L G IA PTE VYGL D N A+ L +K+R LI +D S + Sbjct: 6 LKQATRYLKTGGIIAYPTEAVYGLGCDPLNEKAVTCLLALKQRAWQKGLILIAADYSQLS 65 Query: 72 KHASVDPLSLHL-AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128 +DPL+ L ++F WPGP+T ++ S L + K A K L Sbjct: 66 PF--LDPLTAILEEQIFATWPGPVTWLIPAKSNVP-QWLRGKSTKLAVRVTAHPIAKALC 122 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173 + + PL SAN S Q + + + + + I I+ G I + Sbjct: 123 QYWRGPLVSTSANISHQPPVRTAQKV-RRTFAQRIDYIVPGPIGE 166 >gi|325297458|ref|YP_004257375.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides salanitronis DSM 18170] gi|324317011|gb|ADY34902.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides salanitronis DSM 18170] Length = 187 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 52/186 (27%), Positives = 89/186 (47%), Gaps = 8/186 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 ++ ACE ++ G I PT+TV+G+ D+ N A++R+YEIK+R ++ V V Sbjct: 5 IKNACEVMNKGGVILYPTDTVWGIGCDATNEEAVKRVYEIKRRADSKAMLVLVDSPVKVD 64 Query: 72 KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIE 129 + P ++ L +L PLT++ D ++ P A + RV F+K+L Sbjct: 65 YYVQDVPSVAWDLIELT-TKPLTIIYD--GARNLAPNLLAEDGSVGIRVTNEAFSKELCF 121 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQCEK 187 + + SAN SG+ S I S I + I+D + G S+I+ + Sbjct: 122 RFRKAIVSTSANISGEPSPAVFSEI-SEEIKSAVDYIVDFRREETGHPKPSSIIKLGKGG 180 Query: 188 KVRILR 193 +V+I+R Sbjct: 181 EVKIIR 186 >gi|15679686|ref|NP_276803.1| hypothetical protein MTH1692 [Methanothermobacter thermautotrophicus str. Delta H] gi|22218836|pdb|1JCU|A Chain A, Solution Structure Of Mth1692 Protein From Methanobacterium Thermoautotrophicum gi|2622823|gb|AAB86164.1| conserved protein [Methanothermobacter thermautotrophicus str. Delta H] Length = 208 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 53/199 (26%), Positives = 90/199 (45%), Gaps = 10/199 (5%) Query: 1 MQIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56 M I IT N L +A ++ G + PT+T+YGL V++ + A+RRL+ +K R Sbjct: 1 MLIRKITRKNPSPDVLEEAISVMEGGGIVIYPTDTIYGLGVNALDEDAVRRLFRVKGRSP 60 Query: 57 MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 P+ VS + + + + ++ L + PGP T+VL+ I + T Sbjct: 61 HKPVSICVSCVDEIPRFSRPSGDAMELMERILPGPYTVVLE--RNELIPDVITGGSSRVG 118 Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 RVP + I P+ SAN SG+ ++ I+ + L++D G Sbjct: 119 IRVPDDEICRRIAAR-FPVTATSANISGKPPSPRLEEIVRD--LDAVDLVLDAGDCLDME 175 Query: 177 ESTIVNVQCEKKVRILRPG 195 ST++++ R+LR G Sbjct: 176 PSTVIDLTVNPP-RVLRRG 193 >gi|255020863|ref|ZP_05292919.1| hypothetical protein ACA_1085 [Acidithiobacillus caldus ATCC 51756] gi|254969654|gb|EET27160.1| hypothetical protein ACA_1085 [Acidithiobacillus caldus ATCC 51756] Length = 186 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 1/85 (1%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 LRKA L G IA PTE V+GL D R A+R + +KKRP ++ + S Sbjct: 11 LRKAVALLRHGQVIAYPTEGVWGLGCDPRRRPALRHILRLKKRPQHKGVLLIAATRSQAA 70 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVL 96 + A +D + + +WPG TLVL Sbjct: 71 RFADLDAVEEQVLGRYWPG-TTLVL 94 >gi|260434270|ref|ZP_05788240.1| possible translation factor [Synechococcus sp. WH 8109] gi|260412144|gb|EEX05440.1| possible translation factor [Synechococcus sp. WH 8109] Length = 204 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 48/131 (36%), Positives = 66/131 (50%), Gaps = 10/131 (7%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L AG IPT+T+ GLAV P + L+ +K+RPA PLI + + + +V P Sbjct: 20 LRAGEAAIIPTDTLPGLAV---RPDQAQTLWRLKRRPADKPLILMGASVKDLLHDVAV-P 75 Query: 79 LSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134 +A L +WPG LTLVL L+ C R+P T+ L++ G P Sbjct: 76 CHREVAALAERYWPGALTLVLPARDGGAGRYLNPGGTTLGC-RIPAWEQTRALLQISG-P 133 Query: 135 LAIPSANRSGQ 145 LA SANRSG+ Sbjct: 134 LATTSANRSGE 144 >gi|212288265|sp|A9MN84|RIMN_SALAR RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN Length = 190 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 70/162 (43%), Gaps = 7/162 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ A + L+ IA PTE V+G+ D + TA+ RL E+K+RP LI + Sbjct: 7 TGSIAAAVDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLELKQRPVDKGLILIAASFE 66 Query: 69 MVKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 +K + L+ K WPGP+T V +TT T + RV Sbjct: 67 QLKPYIDDSILTTAQRKAVFDCWPGPVTFVFPASATT--PRWLTGRFDSLAVRVTDHPLV 124 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLI 166 L YG PL SAN SG V+ + + + P++ Sbjct: 125 VALCNAYGKPLVSTSANLSGLPPCRTVEEV-RAQFGDDFPMV 165 >gi|330447323|ref|ZP_08310973.1| protein involved in synthesis of threonylcarbamoyladenosine-modified tRNA [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491514|dbj|GAA05470.1| protein involved in synthesis of threonylcarbamoyladenosine-modified tRNA [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 185 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 6/131 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L G I PTE V+G+ D N A+ +L EIK+RP LI ++ + + Sbjct: 11 LKQGEVIGYPTEAVFGVGCDPDNQQAVEKLLEIKQRPVEKGLILIAANYDQLLPYIDESQ 70 Query: 79 LSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134 L+ WPGP+T V+ + ++ T T RV ++L +G P Sbjct: 71 LTAEQKAAVMATWPGPVTWVMP--TKANVPAFLTGQFTTIAVRVSDHPLVQRLCLEFGKP 128 Query: 135 LAIPSANRSGQ 145 + SAN +GQ Sbjct: 129 ITSTSANLTGQ 139 >gi|253566324|ref|ZP_04843778.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|251945428|gb|EES85866.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] Length = 187 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 68/151 (45%), Gaps = 17/151 (11%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 ++KAC+ + G I PT+TV+G+ D+ N A+RR+YEIK+R ++ V V+ Sbjct: 5 IKKACQVMSEGGVILYPTDTVWGIGCDATNEDAVRRVYEIKRRADSKAMLVLVDSPVKVE 64 Query: 72 KHASVDP-LSLHLAK-------LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 + P ++ L + + + G L +LL+ + N F Sbjct: 65 FYVQDVPSVAWDLIEVADKSLTIIYSGARNLASNLLAEDGSVGIRVTNE---------AF 115 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHI 154 +++L + + + SAN SGQ N I Sbjct: 116 SRRLCQQFRKAIVSTSANVSGQPGAANFNEI 146 >gi|254481766|ref|ZP_05095009.1| Sua5/YciO/YrdC/YwlC family protein [marine gamma proteobacterium HTCC2148] gi|214037895|gb|EEB78559.1| Sua5/YciO/YrdC/YwlC family protein [marine gamma proteobacterium HTCC2148] Length = 207 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 47/190 (24%), Positives = 87/190 (45%), Gaps = 6/190 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +R+A + + AG + PT++ Y + + A+ R+ I+K + D+S + Sbjct: 17 VRQAVDIIRAGGVVVYPTDSAYAIGCHIGDKNALDRIRRIRKLADRHNFTLVCRDLSEIA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKKLIE 129 ++ VD + K PGP T +L +T+++ L A KT RVP T+ L+ Sbjct: 77 TYSRVDNADYRMLKACTPGPYTFILK--ATSEVPRRLMHAKRKTVGLRVPDNNITQALLT 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G P+ + G + + ++ ++ L+IDGG G+E+T V ++ Sbjct: 135 DLGEPMMSVTLIMPGDEYPLIDPYDIRETLQHDVDLVIDGGYC--GMEATTVVDLVDETP 192 Query: 190 RILRPGGLEI 199 +LR G +I Sbjct: 193 LVLRAGKGDI 202 >gi|254447533|ref|ZP_05060999.1| Sua5/YciO/YrdC family protein [gamma proteobacterium HTCC5015] gi|198262876|gb|EDY87155.1| Sua5/YciO/YrdC family protein [gamma proteobacterium HTCC5015] Length = 175 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 47/178 (26%), Positives = 75/178 (42%), Gaps = 14/178 (7%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L G +A PTE V+GL D R A+R++ +K+RP LI ++I + +D Sbjct: 5 LQRGEVVAYPTEAVFGLGCDPRQELAVRQVLRLKQRPEEKGLILIAAEIDQLDHWLDMDA 64 Query: 79 LSLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPL 135 ++ + WPGP+T +L +T +T RV +L +G L Sbjct: 65 VTEQWPHVLERWPGPVTWLLPCRPSTPR--WLRGQFETLAVRVTAHPQAAQLCRDFGGAL 122 Query: 136 AIPSANRSG---QISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 SAN +G S V +C E G + STI++ Q ++ +R Sbjct: 123 VSTSANPAGLEPARSPQAVADYFPDMVCAE------GEVDVSAQPSTILDAQTQRVIR 174 >gi|259909962|ref|YP_002650318.1| Putative DNA topoisomerase, fragment [Erwinia pyrifoliae Ep1/96] gi|224965584|emb|CAX57116.1| Putative DNA topoisomerase, fragment [Erwinia pyrifoliae Ep1/96] Length = 181 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 47/139 (33%), Positives = 64/139 (46%), Gaps = 10/139 (7%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHL- 83 IA PTE V+GL D + A+ RL +K+RP LI +D + + + LS Sbjct: 14 IAYPTEAVFGLGCDPDSEEAVMRLLVLKQRPVKKGLILIAADYQQLIPWIADEQLSAEQK 73 Query: 84 AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRV---PCGFTKKLIETYGHPLAIP 138 A++F WPGP+T VL STT T T RV P L +G PL Sbjct: 74 ARMFSRWPGPVTWVLPARSTTP--GWLTGQFTTLAVRVSDHP--DVIALCHAFGKPLVST 129 Query: 139 SANRSGQISITNVKHILSS 157 SAN +G +V +L+ Sbjct: 130 SANLTGLPPCRHVAEVLAQ 148 >gi|21672740|ref|NP_660807.1| hypothetical protein BUsg475 [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25091574|sp|Q8K977|RIMN_BUCAP RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|21623386|gb|AAM68018.1| hypothetical 20.8 kDa protein [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 190 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 75/171 (43%), Gaps = 10/171 (5%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 IA PTE ++GL D + A++RL ++KKR LI S+ + +K + + LS Sbjct: 23 IAYPTEAMFGLGCDPTSEKAVKRLLDLKKRSIKKGLILVASNYNQIKMYINESKLSAQQK 82 Query: 85 K---LFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCGFT-KKLIETYGHPLAIPS 139 K WPGP T L+ + P T T R+ F+ KL +G L S Sbjct: 83 KTMFFHWPGPYTF---LVPANSLVPCWLTGQFDTIAVRISAHFSIIKLCNVFGKALVSTS 139 Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 AN S + +L K+ P ++ G I S I+N+ K +R Sbjct: 140 ANISNMSPCLTREDVL-KDFGKDFP-VLYGHIGNESHPSKIINIVNGKLIR 188 >gi|226943682|ref|YP_002798755.1| Sua5/YciO/YrdC/YwlC family protein [Azotobacter vinelandii DJ] gi|226718609|gb|ACO77780.1| Sua5/YciO/YrdC/YwlC family protein [Azotobacter vinelandii DJ] Length = 209 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 53/191 (27%), Positives = 83/191 (43%), Gaps = 16/191 (8%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTA---IRRLYEIKKRPAMNPLICHVSDIS 68 +R+A E + G I PT+ Y L N IRRL ++ R L+C SD+S Sbjct: 17 VRQAVEIVRGGGVIVYPTDASYALGCQLGNKAGLERIRRLRQLDDRHNFT-LVC--SDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDL---LSTTDIHPLSTANLKTACFRVPCG-FT 124 + A VD + L K + PGP T +L + +HP +T R+P Sbjct: 74 QLSLFARVDTGAFRLLKTWTPGPYTFILHASREVPRIMLHP----KRRTIGLRIPANPIA 129 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + L+ G PL S G+ + + + +++ LI+DGG LE++ V Sbjct: 130 QALLAELGEPLMSASLILPGETLPLSDPEEMRRRLERQVDLIVDGGAGT--LEASTVVSL 187 Query: 185 CEKKVRILRPG 195 E + +LR G Sbjct: 188 LEGEPEVLRVG 198 >gi|327395467|dbj|BAK12889.1| protein yrdC YrdC [Pantoea ananatis AJ13355] Length = 190 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 65/150 (43%), Gaps = 6/150 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S +L+ L IA PTE V+GL D N +A+ L +K+RP LI +D Sbjct: 7 SGSLQDCVNHLKQHAVIAYPTEAVFGLGCDPDNESAVMALLALKRRPVEKGLILIAADYG 66 Query: 69 MVKKHASVDPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 + + S L+ + ++F WPGP+T V+ T T + RV Sbjct: 67 QLMPYVSDHVLTAMQRERMFACWPGPVTFVVPAAPHTPR--WLTGQFDSLAIRVSDHPDV 124 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHI 154 + L +G PL SAN SGQ V + Sbjct: 125 QALCRAFGKPLVSTSANLSGQPPCRTVDEV 154 >gi|317125566|ref|YP_004099678.1| translation factor SUA5 [Intrasporangium calvum DSM 43043] gi|315589654|gb|ADU48951.1| translation factor SUA5 [Intrasporangium calvum DSM 43043] Length = 255 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 7/175 (4%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRP-AMNPLICHVSDISMVKKHASVDPLSLHL 83 + +PT+TVYG+ D+ + A+ + K R M P + + + V + L Sbjct: 30 VVLPTDTVYGVGCDAFDAEAVGAVLAAKGRGRDMPPPVLIPTPRTAHGLATQVPDYAQRL 89 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142 + FWPGPLTLVL S+ +H T RVP +L+ G P+A+ SAN Sbjct: 90 MERFWPGPLTLVLKAQSS--LHWDLGETNGTVALRVPDNEVALELLRDIG-PMAVTSANS 146 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197 +G + V + + + + +DGG S STI++ ++ R LR G L Sbjct: 147 TGAPAARTVDEA-EGMLGESVAVYLDGGPSTDAAPSTIIDCTGDEP-RTLRLGAL 199 >gi|218247212|ref|YP_002372583.1| Sua5/YciO/YrdC/YwlC family protein [Cyanothece sp. PCC 8801] gi|218167690|gb|ACK66427.1| Sua5/YciO/YrdC/YwlC family protein [Cyanothece sp. PCC 8801] Length = 217 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 54/198 (27%), Positives = 94/198 (47%), Gaps = 14/198 (7%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L G + PT+TVY + D N A++R+ ++K+ PL S +S + +A V Sbjct: 24 LQKGAVMLYPTDTVYAIGCDLNNKAAVQRVRQLKQLSNDKPLTFLCSSLSNIADYALVSD 83 Query: 79 LSLHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVPC-GFTKKLIETYGHPL 135 + + K PGP T LL T + P + + KT RVP + +++ G+P+ Sbjct: 84 EAYRIMKRVIPGPYTF---LLPATKLVPKLVMSPKRKTTGIRVPNHSICQMILQNLGNPI 140 Query: 136 AIPSA---NRSGQISITNV-KHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKKVR 190 SA + G+ + K L + ++ LIID G+ G E STI+++ E+ Sbjct: 141 VSSSAHLPDEDGEFPTLELEKAKLFDRLDHQVDLIIDNGLEP-GFEVSTILDMTSEEPAV 199 Query: 191 ILRPGGLEIETLKRAISV 208 I + GL + L+ +++ Sbjct: 200 IRQ--GLGWDELQNWLNI 215 >gi|294638016|ref|ZP_06716276.1| protein RimN [Edwardsiella tarda ATCC 23685] gi|291088808|gb|EFE21369.1| protein RimN [Edwardsiella tarda ATCC 23685] Length = 190 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 40/124 (32%), Positives = 58/124 (46%), Gaps = 6/124 (4%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL-SLHL 83 IA PTE V+GL D + +A++ L ++K+RP LI +D + + + L Sbjct: 23 IAYPTEAVFGLGCDPDSESAVQALLDLKQRPWDKGLILIAADYQQLLPYVCDEALQGERR 82 Query: 84 AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140 +F WPGP+T V+ + D T T RV ++L YG PL SA Sbjct: 83 TAVFARWPGPVTWVMP--ARDDTPRWLTGRFSTLAVRVSAHPMVQQLCRAYGKPLVSTSA 140 Query: 141 NRSG 144 N SG Sbjct: 141 NLSG 144 >gi|107102729|ref|ZP_01366647.1| hypothetical protein PaerPA_01003796 [Pseudomonas aeruginosa PACS2] gi|218890608|ref|YP_002439472.1| putative SUA5/yciO/yrdC family:Sua5/YciO/YrdC/YwlC protein family [Pseudomonas aeruginosa LESB58] gi|218770831|emb|CAW26596.1| putative SUA5/yciO/yrdC family:Sua5/YciO/YrdC/YwlC protein family [Pseudomonas aeruginosa LESB58] Length = 209 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 47/176 (26%), Positives = 77/176 (43%), Gaps = 9/176 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E + G I PT++ Y L TA+ R+ I++ + D+S + Sbjct: 17 VKQAVEIVRQGGVIVYPTDSSYALGCRIGEKTAVDRIRRIRQLDDKHNFTLVCRDLSELG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVP-CGFTKKL 127 +A VD L K PGP T +L +HP +T RVP C + L Sbjct: 77 VYAKVDTGLFRLLKAHTPGPYTFILSATREVPRMLLHP----KRRTIGLRVPNCPIARAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 +E G PL S G+ N + + + ++ LI+DGG G ST++++ Sbjct: 133 LEELGEPLMSVSLIMPGRGEPLNDPYEMRQVLEHQVDLIVDGGYGG-GEASTVISL 187 >gi|218706890|ref|YP_002414409.1| putative ribosome maturation factor [Escherichia coli UMN026] gi|293406880|ref|ZP_06650804.1| ribosome maturation factor [Escherichia coli FVEC1412] gi|300896630|ref|ZP_07115147.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 198-1] gi|301018860|ref|ZP_07183099.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 69-1] gi|218433987|emb|CAR14904.1| putative ribosome maturation factor [Escherichia coli UMN026] gi|291425691|gb|EFE98725.1| ribosome maturation factor [Escherichia coli FVEC1412] gi|300359507|gb|EFJ75377.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 198-1] gi|300399517|gb|EFJ83055.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 69-1] Length = 190 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 46/142 (32%), Positives = 67/142 (47%), Gaps = 10/142 (7%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +A+ A + L+ IA PTE V+G+ D + A+ RL E+K+RP LI ++ Sbjct: 7 GDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSEIAVMRLLELKQRPVDKGLILIAANYE 66 Query: 69 MVKKHASVDPLSLHLAK---LF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 +K + +D L A+ +F WPGP+T V +TT T + RV Sbjct: 67 QLKPY--IDDTMLTDAQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHP 122 Query: 123 FTKKLIETYGHPLAIPSANRSG 144 L + YG PL SAN SG Sbjct: 123 LVVALCQAYGKPLVSTSANLSG 144 >gi|329295658|ref|ZP_08252994.1| SUA5/yciO/yrdC domain-containing protein [Plautia stali symbiont] Length = 191 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 6/125 (4%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83 IA PTE V+GL D + +A+ L +K+RP LI +D + ++ + + L+ L Sbjct: 24 IAYPTEAVFGLGCDPDSESAVMALLALKQRPVEKGLILIAADYAQLEPYIADRELTVLQR 83 Query: 84 AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140 ++F WPGP+T V+ ++ P T + RV + L +G PL SA Sbjct: 84 ERMFASWPGPVTYVVP--ASPHTPPWLTGRFDSLAIRVSDNPQVQALCRGFGKPLVSTSA 141 Query: 141 NRSGQ 145 N +GQ Sbjct: 142 NLTGQ 146 >gi|257061454|ref|YP_003139342.1| Sua5/YciO/YrdC/YwlC family protein [Cyanothece sp. PCC 8802] gi|256591620|gb|ACV02507.1| Sua5/YciO/YrdC/YwlC family protein [Cyanothece sp. PCC 8802] Length = 217 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 54/198 (27%), Positives = 94/198 (47%), Gaps = 14/198 (7%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L G + PT+TVY + D N A++R+ ++K+ PL S +S + +A V Sbjct: 24 LQKGAVMLYPTDTVYAIGCDLNNKAAVQRVRQLKQLSNDKPLTFLCSSLSNIADYALVSD 83 Query: 79 LSLHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVPC-GFTKKLIETYGHPL 135 + + K PGP T LL T + P + + KT RVP + +++ G+P+ Sbjct: 84 EAYRIMKRVIPGPYTF---LLPATKLVPKLVMSPKRKTTGIRVPNHSICQMILQNLGNPI 140 Query: 136 AIPSA---NRSGQISITNV-KHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKKVR 190 SA + G+ + K L + ++ LIID G+ G E STI+++ E+ Sbjct: 141 VSSSAHLPDEEGEFPTLELEKAKLFDRLDHQVDLIIDNGLEP-GFEVSTILDMTSEEPAV 199 Query: 191 ILRPGGLEIETLKRAISV 208 I + GL + L+ +++ Sbjct: 200 IRQ--GLGWDELQNWLNI 215 >gi|83719037|ref|YP_442432.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia thailandensis E264] gi|167619438|ref|ZP_02388069.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia thailandensis Bt4] gi|257138635|ref|ZP_05586897.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia thailandensis E264] gi|83652862|gb|ABC36925.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia thailandensis E264] Length = 209 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 74/161 (45%), Gaps = 4/161 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E + G IA+PT++ Y LA + A+ R+ I+ L V D+S + Sbjct: 17 IKQAAEIVRGGGVIALPTDSSYALACHLDDKDAVERVRRIRGLDEKQHLSLLVRDLSELA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129 A VD L K PGP +L +T ++ LS + KT RVP T L+E Sbjct: 77 TFAMVDNRQYRLIKSVTPGPYVFILQ--ATKEVPRRLSHPSRKTIGLRVPAHAITLALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 + G PL + N + + + K++ L+IDGG Sbjct: 135 SLGQPLLGTTLILPPDDEPLNDPEEIRARLEKQVDLVIDGG 175 >gi|167570496|ref|ZP_02363370.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia oklahomensis C6786] Length = 209 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 73/161 (45%), Gaps = 4/161 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E + G IA+PT++ Y LA + A+ R+ I+ L V D+S + Sbjct: 17 VKQAAEIVRGGGVIALPTDSSYALACHLDDKDAVERVRRIRGLDEKQHLSLLVRDLSELA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129 A VD L K PGP +L +T ++ LS + KT RVP T L+E Sbjct: 77 TFAMVDNRQYRLIKSVTPGPYVFILQ--ATKEVPRRLSHPSRKTIGLRVPAHAITLALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 G PL + S N + + + K+ L+IDGG Sbjct: 135 ALGQPLLGTTLILSPDDEPLNDPEEIRTRLEKQADLVIDGG 175 >gi|53715189|ref|YP_101181.1| putative translation factor [Bacteroides fragilis YCH46] gi|60683124|ref|YP_213268.1| hypothetical protein BF3675 [Bacteroides fragilis NCTC 9343] gi|265767017|ref|ZP_06094846.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|52218054|dbj|BAD50647.1| putative translation factor [Bacteroides fragilis YCH46] gi|60494558|emb|CAH09357.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343] gi|263253394|gb|EEZ24870.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|301164636|emb|CBW24195.1| conserved hypothetical protein [Bacteroides fragilis 638R] Length = 187 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 68/151 (45%), Gaps = 17/151 (11%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 ++KAC+ + G I PT+TV+G+ D+ N A+RR+YEIK+R ++ V V+ Sbjct: 5 IKKACQVMSEGGVILYPTDTVWGIGCDATNEDAVRRVYEIKRRADSKAMLVLVDSPVKVE 64 Query: 72 KHASVDP-LSLHLAK-------LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 + P ++ L + + + G L +LL+ + N F Sbjct: 65 FYVQDVPSVAWDLIEVADKPLTIIYSGARNLASNLLAEDGSVGIRVTNE---------AF 115 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHI 154 +++L + + + SAN SGQ N I Sbjct: 116 SRRLCQQFRKAIVSTSANVSGQPGAANFNEI 146 >gi|298382621|ref|ZP_06992216.1| ribosome maturation factor [Escherichia coli FVEC1302] gi|298276457|gb|EFI17975.1| ribosome maturation factor [Escherichia coli FVEC1302] Length = 205 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 46/142 (32%), Positives = 67/142 (47%), Gaps = 10/142 (7%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +A+ A + L+ IA PTE V+G+ D + A+ RL E+K+RP LI ++ Sbjct: 22 GDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSEIAVMRLLELKQRPVDKGLILIAANYE 81 Query: 69 MVKKHASVDPLSLHLAK---LF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-G 122 +K + +D L A+ +F WPGP+T V +TT T + RV Sbjct: 82 QLKPY--IDDTMLTDAQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHP 137 Query: 123 FTKKLIETYGHPLAIPSANRSG 144 L + YG PL SAN SG Sbjct: 138 LVVALCQAYGKPLVSTSANLSG 159 >gi|319764020|ref|YP_004127957.1| sua5/ycio/yrdc/ywlc family protein [Alicycliphilus denitrificans BC] gi|317118581|gb|ADV01070.1| Sua5/YciO/YrdC/YwlC family protein [Alicycliphilus denitrificans BC] Length = 211 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 80/164 (48%), Gaps = 10/164 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLA--VDSRNPTA-IRRLYEIKKRPAMNPLICHVSDIS 68 L++A L G +A+PT++ Y L +D R+ IRR+ +I + + L+C D+S Sbjct: 17 LKQAAALLSGGGILAVPTDSSYALVCRLDDRDAVDRIRRVRQINDKHHLT-LLCR--DLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKK 126 + +A VD L KL PGP T +LD +T ++ +S KT RVP + Sbjct: 74 ELASYAHVDNRQYRLLKLATPGPYTFLLD--ATKEVPRRVSHPQRKTIGLRVPDRKGLQM 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 L+E +G PL + +G+ N + K+I IID G Sbjct: 132 LLELHGTPLLATTLIPAGETEPLNDPQEIRERYEKQIDGIIDAG 175 >gi|255011315|ref|ZP_05283441.1| hypothetical protein Bfra3_19388 [Bacteroides fragilis 3_1_12] gi|313149125|ref|ZP_07811318.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313137892|gb|EFR55252.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 187 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 68/151 (45%), Gaps = 17/151 (11%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 ++KAC+ + G I PT+TV+G+ D+ N A+RR+YEIK+R ++ V V+ Sbjct: 5 IKKACQVMSEGGVILYPTDTVWGIGCDATNEDAVRRVYEIKQRADSKAMLVLVDSPVKVE 64 Query: 72 KHASVDP-LSLHLAK-------LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 + P ++ L + + + G L +LL+ + N F Sbjct: 65 FYVQDVPSIAWDLMEVADKPLTIIYSGARNLASNLLAEDGSVGIRVTNE---------AF 115 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHI 154 +++L + + + SAN SGQ N I Sbjct: 116 SRRLCQQFRKAIVSTSANISGQPGAANFNEI 146 >gi|310765560|gb|ADP10510.1| Putative DNA topoisomerase [Erwinia sp. Ejp617] Length = 181 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 46/137 (33%), Positives = 63/137 (45%), Gaps = 6/137 (4%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL-HL 83 IA PTE V+GL D + A+ RL +K+RP LI +D + + + LS Sbjct: 14 IAYPTEAVFGLGCDPDSEEAVMRLLVLKQRPVKKGLILIAADYQQLIPWIADEQLSAEQK 73 Query: 84 AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140 A++F WPGP+T VL STT T T RV L +G PL SA Sbjct: 74 ARMFSRWPGPVTWVLPARSTTP--GWLTGQFTTLAVRVSDHPDVIALCHAFGKPLVSTSA 131 Query: 141 NRSGQISITNVKHILSS 157 N +G +V +L+ Sbjct: 132 NLTGLPPCRHVAEVLAQ 148 >gi|330897267|gb|EGH28686.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. japonica str. M301072PT] Length = 209 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 49/188 (26%), Positives = 84/188 (44%), Gaps = 10/188 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E + AG + PT++ Y L + +AI R+ +++ + D+S + Sbjct: 17 IKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLSQLG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127 A VD + K PGP T +L+ +HP +T RVP + L Sbjct: 77 LFAKVDTGAFRALKAHTPGPYTFILNATREVPRLVLHP----KRRTIGLRVPSHPIAQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL S G + + + + ++ LIIDGGI ST++N+ E Sbjct: 133 LEQLGEPLMSVSLIMPGDSVPLSDPYEMRQILEHQVDLIIDGGIGGFS-ASTVINL-AEG 190 Query: 188 KVRILRPG 195 + +I+R G Sbjct: 191 EPQIVRVG 198 >gi|299067192|emb|CBJ38388.1| conserved protein of unknown function, translation factor domain (SUA5) [Ralstonia solanacearum CMR15] Length = 207 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 77/173 (44%), Gaps = 5/173 (2%) Query: 1 MQIMSITDSNAL-RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 QI T L R+A E + AG IA+PT++ Y LA + A+ RL ++ + Sbjct: 5 FQIHPTTPQGRLIRQAVEIIRAGGLIALPTDSCYALACHLDDKAAVERLRRVRGIDEKHH 64 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFR 118 L D+S + A VD K PGP +L+ +T ++ LS + KT R Sbjct: 65 LTLMCRDLSELATFARVDNRQYRAVKAATPGPFVFLLE--ATKEVPRRLSHPSRKTIGLR 122 Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 VP L+ G PL + G + N + + + +++ L+IDGG Sbjct: 123 VPDHPIPLALMAELGEPLLSATLQLPGDEAPLNEADAIRARLERQLELVIDGG 175 >gi|331664895|ref|ZP_08365796.1| protein YrdC [Escherichia coli TA143] gi|331057405|gb|EGI29391.1| protein YrdC [Escherichia coli TA143] Length = 190 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 46/142 (32%), Positives = 67/142 (47%), Gaps = 10/142 (7%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +A+ A + L+ IA PTE V+G+ D + A+ RL E+K+RP LI ++ Sbjct: 7 GDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSEIAVMRLLELKQRPVDKGLILIAANYE 66 Query: 69 MVKKHASVDPLSLHLAK---LF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 +K + +D L A+ +F WPGP+T V +TT T + RV Sbjct: 67 QLKPY--IDDTMLTDAQRETIFSHWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHP 122 Query: 123 FTKKLIETYGHPLAIPSANRSG 144 L + YG PL SAN SG Sbjct: 123 LVVALCQAYGKPLVSTSANLSG 144 >gi|311277763|ref|YP_003939994.1| SUA5/yciO/yrdC domain-containing protein [Enterobacter cloacae SCF1] gi|308746958|gb|ADO46710.1| SUA5/yciO/yrdC domain protein [Enterobacter cloacae SCF1] Length = 190 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 62/147 (42%), Gaps = 7/147 (4%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH---ASVDPLSL 81 IA PTE V+G+ D + TA+ RL E+K+RP LI + +K + + + P Sbjct: 23 IAYPTEAVFGVGCDPDSETAVMRLLELKQRPVEKGLILIAASFEQLKPYIDDSVLTPAQR 82 Query: 82 HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140 WPGP+T V T T + RV L E YG PL SA Sbjct: 83 EAVFARWPGPVTFVFPAREQTPR--WLTGKFDSLAVRVTDHPLVVALCEAYGKPLVSTSA 140 Query: 141 NRSGQISITNVKHILSSSICKEIPLII 167 N +G +L + + P+++ Sbjct: 141 NLTGLPPCRTTAEVL-AQFGEHFPVVV 166 >gi|225010857|ref|ZP_03701325.1| Sua5/YciO/YrdC/YwlC family protein [Flavobacteria bacterium MS024-3C] gi|225005065|gb|EEG43019.1| Sua5/YciO/YrdC/YwlC family protein [Flavobacteria bacterium MS024-3C] Length = 206 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 57/205 (27%), Positives = 89/205 (43%), Gaps = 16/205 (7%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK---R 54 Q++ I +N AL K L G I PT+TVYG+ D N A+ +L ++K Sbjct: 3 QLIKIYPNNPQEAALEKVVRALRDGALIIYPTDTVYGIGCDITNNKALEKLAKLKGVKLE 62 Query: 55 PAMNPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK 113 A IC +D+S + + +D + + K PGP T V L + P + K Sbjct: 63 KATWSFIC--ADLSNISDYVKQIDTATFKILKRSLPGPYTFV---LPGNNNLPKAFKKRK 117 Query: 114 TACFRVPC-GFTKKLIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGGI 171 T RVP KK++E G+P+ S ++ T ++ + +IDGG Sbjct: 118 TIGIRVPDHSIPKKIVEMLGNPIVSTSIYDPDEVLEYTTDPELIFEKWSPHVAFVIDGGY 177 Query: 172 SKIGLESTIVNVQCEKKVRILRPGG 196 + STIV++ + I R G Sbjct: 178 GD-NVPSTIVDLSGDSPELIRRGKG 201 >gi|152987724|ref|YP_001347308.1| hypothetical protein PSPA7_1927 [Pseudomonas aeruginosa PA7] gi|150962882|gb|ABR84907.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7] Length = 209 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 47/176 (26%), Positives = 76/176 (43%), Gaps = 9/176 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E + G I PT++ Y L TA+ R+ I++ + D+S + Sbjct: 17 VKQAVEIVRQGGVIVYPTDSSYALGCRIGEKTAVDRIRRIRQLDDKHNFTLVCRDLSELG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVP-CGFTKKL 127 +A VD L K PGP T +L +HP +T RVP C + L Sbjct: 77 VYAKVDTGLFRLLKAHTPGPYTFILSATREVPRMLLHP----KRRTIGLRVPNCPIARAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 +E G PL S G N + + + ++ LI+DGG G ST++++ Sbjct: 133 LEELGEPLMSVSLIMPGSSEPLNDPYEMRQVLEHQVDLIVDGGYGG-GEASTVISL 187 >gi|269103770|ref|ZP_06156467.1| YrdC family protein [Photobacterium damselae subsp. damselae CIP 102761] gi|268163668|gb|EEZ42164.1| YrdC family protein [Photobacterium damselae subsp. damselae CIP 102761] Length = 185 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 59/131 (45%), Gaps = 6/131 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L G I PTE V+G+ D + A+ +L +K+RP LI +D + + Sbjct: 11 LQQGEVIGYPTEAVFGVGCDPDSEQAVHKLLALKQRPIEKGLILIAADYDQLLAYVDESQ 70 Query: 79 LS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134 L+ L K WPGP+T V+ + + T +T RV ++L +G P Sbjct: 71 LTTNQLEQIKNSWPGPVTWVMP--TKPSVPKFLTGQFETIAVRVSDHPLVQQLCRQFGKP 128 Query: 135 LAIPSANRSGQ 145 + SAN +GQ Sbjct: 129 ITSTSANLTGQ 139 >gi|281424255|ref|ZP_06255168.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella oris F0302] gi|281401524|gb|EFB32355.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella oris F0302] Length = 189 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 72/151 (47%), Gaps = 5/151 (3%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV- 64 +T +R A E + G I PT+TV+G+ D+ N A+ ++Y IKKR LIC V Sbjct: 1 MTREEDIRNAVECMRKGGVILYPTDTVWGIGCDATNKEAVAKVYAIKKRDDSKALICLVD 60 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 SD + + +V ++ L P T++LD ++ A + R+ F Sbjct: 61 SDARLQRCFRNVPNVAWELLDAA-IKPTTVILD--DAVNVAENLVAEDGSLAMRITSEPF 117 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHI 154 +K+L + P+ SAN SG+ + N + I Sbjct: 118 SKELCYRFQKPVVSTSANVSGEPAAANYEDI 148 >gi|156932272|ref|YP_001436188.1| putative ribosome maturation factor [Cronobacter sakazakii ATCC BAA-894] gi|212277675|sp|A7MPF3|RIMN_ENTS8 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|156530526|gb|ABU75352.1| hypothetical protein ESA_00043 [Cronobacter sakazakii ATCC BAA-894] Length = 190 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 66/141 (46%), Gaps = 14/141 (9%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 IA PTE V+G+ D + TA++RL E+K+RP LI ++ +K + +D +L Sbjct: 23 IAYPTEAVFGVGCDPDSETAVKRLLELKQRPMEKGLILIAANFDQLKPY--IDDAALTAE 80 Query: 85 K---LF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRV---PCGFTKKLIETYGHPLA 136 + +F WPGP+T V +T T + RV P L E +G PL Sbjct: 81 QREAVFARWPGPVTFVFPAKPSTPR--WLTGRFDSLAVRVTNHPQ--VIALCEAFGKPLV 136 Query: 137 IPSANRSGQISITNVKHILSS 157 SAN SG + +L+ Sbjct: 137 STSANLSGLEPCRTAQEVLAQ 157 >gi|606216|gb|AAA58079.1| ORF_f176 [Escherichia coli str. K-12 substr. MG1655] Length = 176 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/124 (33%), Positives = 59/124 (47%), Gaps = 6/124 (4%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83 IA PTE V+G+ D + TA+ RL E+K+RP LI ++ +K + L+ + Sbjct: 9 IAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQLKPYIDDTMLTDVQR 68 Query: 84 AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSA 140 +F WPGP+T V +TT T + RV L + YG PL SA Sbjct: 69 ETIFSRWPGPVTFVFPAPATTPRW--LTGRFDSLAVRVTDHPLVVALCQAYGKPLVSTSA 126 Query: 141 NRSG 144 N SG Sbjct: 127 NLSG 130 >gi|295836496|ref|ZP_06823429.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces sp. SPB74] gi|197699010|gb|EDY45943.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces sp. SPB74] Length = 215 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 60/220 (27%), Positives = 95/220 (43%), Gaps = 47/220 (21%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR------PAM----N 58 + LR+A + G + +PT+TVYG+ D+ + A+ L K R P + N Sbjct: 14 ATGLREAAAAVRRGELVVLPTDTVYGIGADAFSAEAVGDLLTAKGRGRNMPSPVLIGSPN 73 Query: 59 PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLV--------LDLLSTTDIHPLSTA 110 L V+D S + L FWPG LTLV DL T Sbjct: 74 TLHGLVTDFSET---------AWDLVDAFWPGGLTLVARHQPSLAWDLGDTR-------- 116 Query: 111 NLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQIS---ITNVKHILSSSICKEIPLI 166 T R+P +L+ +G P+A+ S N +G S + +L S+ + Sbjct: 117 --GTVAIRMPLHPVAIELLSDFG-PMAVSSGNLTGHPSPETCDAAQEMLGDSVS----VY 169 Query: 167 IDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAI 206 +DGG + + S+IV+V E V +LR G ++ E L++ + Sbjct: 170 LDGGPTSGNVPSSIVDVSGEVPV-LLRAGVIDTEELRKVV 208 >gi|51244753|ref|YP_064637.1| hypothetical protein DP0901 [Desulfotalea psychrophila LSv54] gi|50875790|emb|CAG35630.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54] Length = 203 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 3/125 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++ + L G I PT+T YG+ D N A++ L ++KKRP P S ++ + Sbjct: 15 IKQVVQKLQQGAIICYPTDTGYGIGCDLLNQRAVKALMQLKKRPKNKPFSFMCSGLTHIS 74 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 ++A V + L K PGP T VL + + + KT RVP ++ LI Sbjct: 75 EYAHVSNTAYRLLKKNLPGPYTFVLP--GSKLVPKVMATKQKTVGIRVPDNPISQALITA 132 Query: 131 YGHPL 135 G+P+ Sbjct: 133 LGNPI 137 >gi|315426713|dbj|BAJ48338.1| translation factor [Candidatus Caldiarchaeum subterraneum] Length = 132 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/130 (33%), Positives = 68/130 (52%), Gaps = 5/130 (3%) Query: 80 SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGH-PLAIP 138 L A WPG +T+V+ T++ L TA KT R+P LI H PL Sbjct: 6 ELEAAIRLWPGAVTIVM--AKKTELPELVTAGEKTVGVRMPAHVVPLLIMQKAHRPLVGT 63 Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLE 198 SAN S + S T + I SS+ +++ +++D G + L ST+V +Q + +V +LR G L Sbjct: 64 SANISDEPSATTIDQI-PSSVLEKVDVVVDAGRTHHLLPSTVVKIQ-DGQVVVLREGVLS 121 Query: 199 IETLKRAISV 208 E +++ I + Sbjct: 122 REEIEKRIGL 131 >gi|50954445|ref|YP_061733.1| translation factor [Leifsonia xyli subsp. xyli str. CTCB07] gi|50950927|gb|AAT88628.1| translation factor [Leifsonia xyli subsp. xyli str. CTCB07] Length = 232 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 60/212 (28%), Positives = 94/212 (44%), Gaps = 26/212 (12%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +R A + G + IPT+TVYG+A D+ +P A++RL + K R +P V ++ Sbjct: 15 TGMRLARGAIGRGELVVIPTDTVYGVAADAFSPAAVQRLLDAKGRGRQSPPPVLVPGLAA 74 Query: 70 VKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANL----KTACFRVPCG-F 123 + A P + L + FWPG LT+VL PL L T R+P Sbjct: 75 LAALAERVPAEVEALVEAFWPGGLTIVL------PAAPLLVWGLGETSGTVALRMPQDRI 128 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE------ 177 +L+ G PLA+ SAN SG+ + + + + +DGG + + Sbjct: 129 ALELLAETG-PLAVSSANLSGRPAARTAVEA-EGMLGDAVAVYLDGGEAGSAYDRVEGRD 186 Query: 178 --STIVNVQC----EKKVRILRPGGLEIETLK 203 STI++ +RILR G + E L+ Sbjct: 187 SSSTILDATALASGSGGLRILRHGVVTAERLR 218 >gi|323496967|ref|ZP_08101995.1| Sua5/YciO/YrdC family protein [Vibrio sinaloensis DSM 21326] gi|323318041|gb|EGA71024.1| Sua5/YciO/YrdC family protein [Vibrio sinaloensis DSM 21326] Length = 185 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 60/136 (44%), Gaps = 6/136 (4%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 +A L G IA PTE V+G+ D NP AI +L +K+RP LI + + + Sbjct: 6 QALNALKQGEVIAYPTEGVFGVGCDPDNPEAIEKLLTLKQRPVEKGLILIAASYQQLLPY 65 Query: 74 ASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 LS L WPGP+T ++ + + + + RV +K+ Sbjct: 66 IDETQLSEEQLKRVHQTWPGPVTWIMP--CSDKVSSWVSGQFDSIAVRVTDHPLVQKMCN 123 Query: 130 TYGHPLAIPSANRSGQ 145 +G PL SAN +G+ Sbjct: 124 AFGKPLTSTSANLTGE 139 >gi|319785842|ref|YP_004145317.1| SUA5/yciO/yrdC domain [Pseudoxanthomonas suwonensis 11-1] gi|317464354|gb|ADV26086.1| SUA5/yciO/yrdC domain [Pseudoxanthomonas suwonensis 11-1] Length = 187 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/143 (31%), Positives = 62/143 (43%), Gaps = 20/143 (13%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 A + L G IA PTE V+GL D N A+ RL IK+RP +I + + V+ Sbjct: 9 SAADLLRRGGVIAYPTEAVWGLGCDPGNEAAVLRLLRIKQRPVEKGMIVVAAGLEAVRPW 68 Query: 74 ASVDPLSLHLAKL----------FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-G 122 L LA+L WPGP T + ST P T + ++ R+ Sbjct: 69 -------LDLAQLPAGRMTEVAASWPGPNTWAIP--STPLAPPWVTGSHRSLAVRISAHP 119 Query: 123 FTKKLIETYGHPLAIPSANRSGQ 145 L E +G P+ SAN +GQ Sbjct: 120 VVVALCEAFGGPVVSTSANLAGQ 142 >gi|307153963|ref|YP_003889347.1| Sua5/YciO/YrdC/YwlC family protein [Cyanothece sp. PCC 7822] gi|306984191|gb|ADN16072.1| Sua5/YciO/YrdC/YwlC family protein [Cyanothece sp. PCC 7822] Length = 217 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 60/207 (28%), Positives = 102/207 (49%), Gaps = 17/207 (8%) Query: 13 RKACEFLDA---GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 R+ + +DA G + PT+TVY + D +A+ R+ ++K+ PL S +S Sbjct: 15 RQIDQIVDALKRGAIMLYPTDTVYAIGCDMNTKSAVERVRKLKQLSNDKPLTFLSSSLSN 74 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVPCG-FTKK 126 + ++A V + + K PGP T LL T + P + + KT RVP + Sbjct: 75 ISEYAVVTDQAYRIMKRLIPGPYTF---LLPATKLVPKLVMSPKRKTTGIRVPDNEVCQA 131 Query: 127 LIETYGHPLAIPSA---NRSGQISITNV-KHILSSSICKEIPLIIDGGISKIGLE-STIV 181 +++T G+P+ SA + G + K L S+ + +IID G++ G E STI+ Sbjct: 132 ILQTLGNPIISTSAHLPDDDGDFPTLGLEKARLFDSMDSLVDIIIDTGVNP-GFEVSTIL 190 Query: 182 NVQCEKKVRILRPGGLEIETLKRAISV 208 ++ ++ V I+R GL E L+ I+V Sbjct: 191 DLTQDEPV-IVRE-GLGWEQLQNWIAV 215 >gi|239982317|ref|ZP_04704841.1| hypothetical protein SalbJ_22996 [Streptomyces albus J1074] gi|291454161|ref|ZP_06593551.1| translation factor SUA5 [Streptomyces albus J1074] gi|291357110|gb|EFE84012.1| translation factor SUA5 [Streptomyces albus J1074] Length = 215 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 59/214 (27%), Positives = 93/214 (43%), Gaps = 37/214 (17%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR------PAM----NP 59 LR+A + G + +PT+TVYG+ D+ +P A+ L K R P + N Sbjct: 15 TGLREAASAVRRGELVVLPTDTVYGVGADAFSPEAVGDLLTAKGRGRNMPSPVLIGSPNT 74 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANL----KTA 115 L V+D S + L FWPG LTLV P NL T Sbjct: 75 LHGLVTDFSET---------AWDLVDAFWPGALTLV------ARHQPSLQWNLGDTRGTV 119 Query: 116 CFRVPCGFTKKLIETYGHPLAIPSANRSGQISITN---VKHILSSSICKEIPLIIDGGIS 172 R+P + T P+A+ SAN +G S +++L +I + +DGG + Sbjct: 120 AVRMPLHPVAIELLTETGPMAVSSANLTGHPSPETCEAARNMLGDAIS----VYLDGGPT 175 Query: 173 KIGLESTIVNVQCEKKVRILRPGGLEIETLKRAI 206 + S+IV+V V +LR G ++ + L++ + Sbjct: 176 PGIVPSSIVDVTGSVPV-LLRAGAIDADELRKVV 208 >gi|312888915|ref|ZP_07748476.1| translation factor SUA5 [Mucilaginibacter paludis DSM 18603] gi|311298605|gb|EFQ75713.1| translation factor SUA5 [Mucilaginibacter paludis DSM 18603] Length = 188 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 53/195 (27%), Positives = 91/195 (46%), Gaps = 22/195 (11%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + + A + L G I PT+T++G+ D+ NP A++++Y +K+R +I V + Sbjct: 4 DEVNAALKVLQDGGIILYPTDTIWGIGCDAGNPEAVKKIYALKQRDEAKSMIVLVDSENK 63 Query: 70 VKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 ++ + S V ++ L + + PLTLV+ ++ P A + RV F ++L Sbjct: 64 LESYISQVADVAYDLIE-YAENPLTLVMP--GAKNLAPNLIAADGSVGIRVTKHPFCQQL 120 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE---------S 178 I+ PL SAN SGQ S N I + IIDG + LE S Sbjct: 121 IQRLRKPLVSTSANISGQPSPKNFNSISAD--------IIDGVDYVVNLEQHDLSEKRPS 172 Query: 179 TIVNVQCEKKVRILR 193 TI+ ++ + + +R Sbjct: 173 TIMRIEPDGRFEFIR 187 >gi|118467540|ref|YP_889200.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium smegmatis str. MC2 155] gi|118168827|gb|ABK69723.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium smegmatis str. MC2 155] Length = 221 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 53/202 (26%), Positives = 90/202 (44%), Gaps = 7/202 (3%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 + A + G + +PT+TVYG+ D+ + A+ L K R P+ V + + Sbjct: 16 GIASAVSAVKGGRLVVMPTDTVYGIGADAFDSGAVGALLAAKGRGRDMPVGVLVGSWTTI 75 Query: 71 KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 SV + L + FWPG L+LV+ + T + R+P +L+ Sbjct: 76 DGLVYSVPRAARELIRAFWPGALSLVVHQAPSLQWDLGDTRG--SVMLRMPLHPVAIELL 133 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 G P+A+ SAN SG+ + + + + +DGG ++ STIV++ Sbjct: 134 REVG-PMAVSSANISGRPAAGTATEA-REQLGDLVEVYLDGGPAEQQAASTIVDLTGSDP 191 Query: 189 VRILRPGGLEIETLKRAISVEL 210 RILR G + E + R + VE+ Sbjct: 192 -RILRTGPISAEDVARVLDVEV 212 >gi|15598395|ref|NP_251889.1| hypothetical protein PA3199 [Pseudomonas aeruginosa PAO1] gi|116051189|ref|YP_789980.1| SUA5/yciO/yrdC family:Sua5/YciO/YrdC/YwlC family protein [Pseudomonas aeruginosa UCBPP-PA14] gi|254236161|ref|ZP_04929484.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|254241887|ref|ZP_04935209.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|296388314|ref|ZP_06877789.1| SUA5/yciO/yrdC family:Sua5/YciO/YrdC/YwlC family protein [Pseudomonas aeruginosa PAb1] gi|313108516|ref|ZP_07794517.1| putative Sua5/YciO/YrdC/YwlC protein family [Pseudomonas aeruginosa 39016] gi|9949319|gb|AAG06587.1|AE004744_2 conserved hypothetical protein [Pseudomonas aeruginosa PAO1] gi|115586410|gb|ABJ12425.1| putative SUA5/yciO/yrdC family:Sua5/YciO/YrdC/YwlC protein family [Pseudomonas aeruginosa UCBPP-PA14] gi|126168092|gb|EAZ53603.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|126195265|gb|EAZ59328.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|310881019|gb|EFQ39613.1| putative Sua5/YciO/YrdC/YwlC protein family [Pseudomonas aeruginosa 39016] Length = 209 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/176 (26%), Positives = 76/176 (43%), Gaps = 9/176 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E + G I PT++ Y L TA+ R+ I++ + D+S + Sbjct: 17 VKQAVEIVRQGGVIVYPTDSSYALGCRIGEKTAVDRIRRIRQLDDKHNFTLVCRDLSELG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVP-CGFTKKL 127 +A VD L K PGP T +L +HP +T RVP C + L Sbjct: 77 VYAKVDTGLFRLLKAHTPGPYTFILSATREVPRMLLHP----KRRTIGLRVPNCPIARAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 +E G PL S G N + + + ++ LI+DGG G ST++++ Sbjct: 133 LEELGEPLMSVSLIMPGSGEPLNDPYEMRQVLEHQVDLIVDGGYGG-GEASTVISL 187 >gi|292899585|ref|YP_003538954.1| hypothetical protein EAM_1875 [Erwinia amylovora ATCC 49946] gi|291199433|emb|CBJ46550.1| conserved hypothetical protein [Erwinia amylovora ATCC 49946] Length = 206 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/194 (24%), Positives = 84/194 (43%), Gaps = 6/194 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E L+ G I PT++ Y L + +A+ R++ I++ + D+S + Sbjct: 17 IKQAVEMLNKGSVIVYPTDSGYALGCKLEDKSAMERIWRIRQLDGNHNFTLMCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD + L K PG T +L +T ++ L + KT RVP L+E Sbjct: 77 TYAYVDNTAFRLIKNNTPGNYTFILK--ATKEVPRRLMSEKRKTIGLRVPSNPIALALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+ S G + + I K + LII GG +G + T V E Sbjct: 135 ALNEPMMSTSLMLPGNDFTESDPEAIQDEIGKLVDLIIHGGF--LGQQPTTVIDLTENTP 192 Query: 190 RILRPGGLEIETLK 203 ++R G +++ + Sbjct: 193 EVVREGVGDVQPFR 206 >gi|260775021|ref|ZP_05883921.1| YrdC family protein [Vibrio coralliilyticus ATCC BAA-450] gi|260609111|gb|EEX35270.1| YrdC family protein [Vibrio coralliilyticus ATCC BAA-450] Length = 185 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 6/140 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + +A L G IA PTE V+G+ D NP AI++L E+K+RP LI + Sbjct: 2 DNFEQALLALKNGEVIAYPTEGVFGVGCDPDNPEAIQKLLELKQRPVEKGLILIAASYEQ 61 Query: 70 VKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + + L+ L WPGP+T ++ + + + + RV + Sbjct: 62 LLPYIDESQLTDEQLQKVHQTWPGPVTWIMP--CSDKVSDWVSGQFDSIAVRVTDHPLVQ 119 Query: 126 KLIETYGHPLAIPSANRSGQ 145 K+ G PL SAN +G+ Sbjct: 120 KMCNALGKPLTSTSANLTGE 139 >gi|325519096|gb|EGC98583.1| Sua5/YciO/YrdC/YwlC [Burkholderia sp. TJI49] Length = 210 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 74/161 (45%), Gaps = 4/161 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E ++ G IA+PT++ Y LA + A+ R+ I+ L V D+S + Sbjct: 17 IKQAVEIVNKGGVIAMPTDSSYALACHLDDKDAVERVRRIRGLDEKQHLSLLVRDLSELA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129 A VD L K PGP +L +T ++ LS + KT RVP T L+E Sbjct: 77 NFAMVDNRQYRLIKSVTPGPYVFILQ--ATKEVPRRLSHPSRKTIGLRVPDHAITLALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 G PL + N + + + K++ L+IDGG Sbjct: 135 ALGQPLLGTTLILPPDDEPLNDPEEIRARLEKQVDLVIDGG 175 >gi|15827567|ref|NP_301830.1| hypothetical protein ML1136 [Mycobacterium leprae TN] gi|221230044|ref|YP_002503460.1| hypothetical protein MLBr_01136 [Mycobacterium leprae Br4923] gi|1176863|sp|P45831|Y1136_MYCLE RecName: Full=Uncharacterized protein ML1136 gi|699330|gb|AAA63091.1| sua5 [Mycobacterium leprae] gi|13093117|emb|CAC31517.1| conserved hypothetical protein [Mycobacterium leprae] gi|219933151|emb|CAR71231.1| conserved hypothetical protein [Mycobacterium leprae Br4923] Length = 220 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 55/202 (27%), Positives = 92/202 (45%), Gaps = 7/202 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + A L G + +PT+TVYG+ D+ + A+ L K R P+ V Sbjct: 17 ARGIASAVAALKGGRLVVMPTDTVYGIGADAFDRAAVAALLSAKGRGRDMPVGVLVGSWH 76 Query: 69 MVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKK 126 ++ P + L + FWPG L+LV+ + + L A+ T R+P + Sbjct: 77 TIEGLVYTMPDGARELIRAFWPGALSLVVVHAPSLNWD-LGDAH-GTVMLRMPLHSVAIE 134 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+ G P+A+ SAN SGQ + +V + + + + +D G S STIV++ E Sbjct: 135 LLCEVG-PMAVSSANVSGQPAAVDVDGA-RGQLGELVGVYLDAGPSAQQAASTIVDL-TE 191 Query: 187 KKVRILRPGGLEIETLKRAISV 208 RILR G + + + + V Sbjct: 192 ATPRILRAGPVSVARIAEVLGV 213 >gi|325300388|ref|YP_004260305.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides salanitronis DSM 18170] gi|324319941|gb|ADY37832.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides salanitronis DSM 18170] Length = 203 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 85/205 (41%), Gaps = 22/205 (10%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVS 65 D + L+ + L+ G I PT+T+Y + + I ++ +K P N L Sbjct: 10 NDPDVLQHIVDILNDGGIIIYPTDTMYAMGCHALKERPIEKICRLKNLNPKKNNLSIICY 69 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP----- 120 D+S + ++A V + L K PGP T +L S P N K RVP Sbjct: 70 DLSNISEYAQVGNATFKLMKRNLPGPFTFILKADSRL---PKIFRNRKEVGIRVPGNPII 126 Query: 121 ---CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 C I T PL + I ++ E+ L+IDGGI G+E Sbjct: 127 REICRLLDAPILTTTLPL-----HEGEDIEYVTDPELIDEKFGDEVDLVIDGGIG--GVE 179 Query: 178 -STIVNVQCEKKVRILRPG-GLEIE 200 ST++N CE I+R G G+ IE Sbjct: 180 PSTVINC-CEDMPEIVRQGKGILIE 203 >gi|300312576|ref|YP_003776668.1| translation factor SUA5 [Herbaspirillum seropedicae SmR1] gi|300075361|gb|ADJ64760.1| translation factor (SUA5) protein [Herbaspirillum seropedicae SmR1] Length = 211 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/191 (25%), Positives = 93/191 (48%), Gaps = 15/191 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A + + G +A+PT++ Y L N A+ R+ I+ + L D+S + Sbjct: 17 IKQAAQIIHKGGLVALPTDSCYALVCQLDNKDAVERVRRIRGVDEKHHLTLLCRDLSEIA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 ++A VD L K PG T +L+ +T ++ LS + KT RVP L+E Sbjct: 77 QYAKVDNRQYRLLKAATPGAYTFILE--ATKEVPRRLSHPSRKTIGLRVPENRIAHMLLE 134 Query: 130 TYGHPLA-----IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 G PL +P + + +T+ + I S + K+I L+ID G + +T++++ Sbjct: 135 ELGQPLLGTTLILPDDD----LPLTSAEDI-RSHLEKQIDLVIDSGACSLE-PTTVIDLT 188 Query: 185 CEKKVRILRPG 195 +++ ++R G Sbjct: 189 DDEQPVLVRQG 199 >gi|292488388|ref|YP_003531270.1| hypothetical protein EAMY_1912 [Erwinia amylovora CFBP1430] gi|291553817|emb|CBA20862.1| Uncharacterized protein yciO [Erwinia amylovora CFBP1430] Length = 207 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/194 (24%), Positives = 84/194 (43%), Gaps = 6/194 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E L+ G I PT++ Y L + +A+ R++ I++ + D+S + Sbjct: 18 IKQAVEMLNKGSVIVYPTDSGYALGCKLEDKSAMERIWRIRQLDGNHNFTLMCRDLSELS 77 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD + L K PG T +L +T ++ L + KT RVP L+E Sbjct: 78 TYAYVDNTAFRLIKNNTPGNYTFILK--ATKEVPRRLMSEKRKTIGLRVPSNPIALALLE 135 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+ S G + + I K + LII GG +G + T V E Sbjct: 136 ALNEPMMSTSLMLPGNDFTESDPEAIQDEIGKLVDLIIHGGF--LGQQPTTVIDLTENTP 193 Query: 190 RILRPGGLEIETLK 203 ++R G +++ + Sbjct: 194 EVVREGVGDVQPFR 207 >gi|146282789|ref|YP_001172942.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas stutzeri A1501] gi|145570994|gb|ABP80100.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas stutzeri A1501] gi|327481127|gb|AEA84437.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas stutzeri DSM 4166] Length = 207 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/188 (24%), Positives = 82/188 (43%), Gaps = 10/188 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E + G + PT++ Y + N I R+ +++ + D+S + Sbjct: 17 IKQAVEIIRKGGVVVYPTDSSYAIGCSMGNKAGIERIRRLRQLDDKHNFTLACRDLSQLG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPC-GFTKKL 127 A VD + L K PGP T++L +HP +T RVP + L Sbjct: 77 LFAKVDTAAFRLLKAHLPGPYTIILTATREVPRMLLHP----KRRTIGLRVPALPIAQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL S G+ + + + ++ ++ LIIDGG GLE++ V + Sbjct: 133 LEELGEPLMSVSLILPGEDLPMSDPYEMRDALEHQVDLIIDGGYG--GLEASTVVSLVDD 190 Query: 188 KVRILRPG 195 + ++R G Sbjct: 191 QPEVVRVG 198 >gi|332749752|gb|EGJ80167.1| ribosome maturation factor [Shigella flexneri 4343-70] gi|332998321|gb|EGK17921.1| ribosome maturation factor [Shigella flexneri K-218] Length = 190 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/140 (31%), Positives = 65/140 (46%), Gaps = 6/140 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +A+ A + L+ IA PTE V+G+ D + TA+ RL E+K+RP LI ++ Sbjct: 7 GDAIAAAIDVLNEKRVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYE 66 Query: 69 MVKKHASVDPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 +K + L+ + +F WPGP+T V +TT T + RV Sbjct: 67 QLKPYIDDTMLTDVQRETIFSCWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLV 124 Query: 125 KKLIETYGHPLAIPSANRSG 144 L + Y PL SAN SG Sbjct: 125 VALCQAYDKPLVSTSANLSG 144 >gi|330823716|ref|YP_004387019.1| Sua5/YciO/YrdC/YwlC family protein [Alicycliphilus denitrificans K601] gi|329309088|gb|AEB83503.1| Sua5/YciO/YrdC/YwlC family protein [Alicycliphilus denitrificans K601] Length = 211 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 4/161 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++A L G +A+PT++ Y L + A+ R+ +++ + L D+S + Sbjct: 17 LKQAAALLSGGGILAVPTDSSYALVCRLDDKDAVDRIRRVRQINDKHHLTLLCRDLSELA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129 +A VD L KL PGP T +LD +T ++ +S KT RVP + L+E Sbjct: 77 SYAHVDNRQYRLLKLATPGPYTFLLD--ATKEVPRRVSHPQRKTIGLRVPDRKGLQMLLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 +G PL + +G+ N + K+I IID G Sbjct: 135 LHGTPLLATTLIPAGEAEPLNDPQEIRERYEKQIDGIIDAG 175 >gi|238027994|ref|YP_002912225.1| Sua5/YciO/YrdC/YwlC [Burkholderia glumae BGR1] gi|237877188|gb|ACR29521.1| Sua5/YciO/YrdC/YwlC [Burkholderia glumae BGR1] Length = 211 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 72/161 (44%), Gaps = 4/161 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +R+A E + G IA+PT++ Y LA + A+ R+ I+ L V D+S + Sbjct: 17 VRQAVEIVKQGGVIAMPTDSSYALACQLDDRAAVERVRRIRGLDEKQLLSLLVRDLSELA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKKLIE 129 A VD L K PGP VL +T ++ LS + KT RVP T ++E Sbjct: 77 NFAMVDNHQYRLIKSVTPGPYVFVLQ--ATKEVPRRLSHPSRKTIGLRVPDHAITLAVLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 G PL + N + + K++ L+IDGG Sbjct: 135 ALGEPLLGTTLILPPDTDPLNDPEEIRERLEKQVDLVIDGG 175 >gi|318056879|ref|ZP_07975602.1| translation factor SUA5 [Streptomyces sp. SA3_actG] gi|318076682|ref|ZP_07984014.1| translation factor SUA5 [Streptomyces sp. SA3_actF] Length = 217 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/212 (24%), Positives = 89/212 (41%), Gaps = 11/212 (5%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 M + + L A + L G +A+PT Y L + + A R ++ +K+RP PL+ Sbjct: 1 MDVLAPDQLPLAAQLLRTGRLVAMPTPRWYMLCARATDFLATRAIFHVKQRPETKPLLLL 60 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 + + + + + L + WPG L L L + P++ A A P G Sbjct: 61 LDPTTTIDALFDLSEDARLLTEHLWPGDLALRLPWKPGAE--PIAAAG-SPALVGCPDGI 117 Query: 124 TKKLIETYGHPLA-------IPSANRSGQISITNVKHILSSSICKE-IPLIIDGGISKIG 175 +LI T G PLA P+A + ++T + K I ++DGGI G Sbjct: 118 LGRLISTVGEPLAAAVCSISTPAAGAADHPALTVAQVAAFDRRAKAGIAAVVDGGICPHG 177 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAIS 207 T+V+ + + R G + ++ A++ Sbjct: 178 RHMTVVDCPVDATAHVHREGTVHARAVEAALT 209 >gi|282860060|ref|ZP_06269141.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella bivia JCVIHMP010] gi|282587148|gb|EFB92372.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella bivia JCVIHMP010] Length = 189 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 75/148 (50%), Gaps = 5/148 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++KA E + G I PT+TV+G+ D+ NP A+ ++Y++K+R LIC V + Sbjct: 4 EDDIKKAIEVMRQGGVILYPTDTVWGIGCDATNPEAVAKVYKLKRRDDSKALICLVDSEN 63 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 ++++ +V ++ L + P TL+LD + ++ P A + R+ F+ + Sbjct: 64 RLQRYVRNVPDVAWQLMEAV-TKPTTLILD--NAVNLAPNLIAEDGSIGMRITKEPFSHE 120 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHI 154 L + + SAN SG+ + N I Sbjct: 121 LCFRFQKAIVSTSANISGEQAAQNYGDI 148 >gi|328954788|ref|YP_004372121.1| SUA5/yciO/yrdC domain protein [Coriobacterium glomerans PW2] gi|328455112|gb|AEB06306.1| SUA5/yciO/yrdC domain protein [Coriobacterium glomerans PW2] Length = 233 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 58/209 (27%), Positives = 90/209 (43%), Gaps = 17/209 (8%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVD---SRNPTAI--------RRLYEIKKRPAMNP 59 A+ L AG IPTETVYG+AV P A+ RR++ +K+R + Sbjct: 16 AVEAGSAVLTAGGVALIPTETVYGIAVAISAFARPGAMLPDPGSGYRRIFSLKRRDLVQT 75 Query: 60 LICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 L VS + + + +D + LA+ FWPG LTLV+D + + A T R Sbjct: 76 LPLLVSGPADLDRFGLDIDSQTRCLAERFWPGALTLVVD--AAERVPAFMRAADGTIALR 133 Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 LI+ G PLA SAN + + + I + + ID G + Sbjct: 134 ASSSPAVGDLIDACGCPLAATSANTHAMPAPASFAEV-EPRILDGVDVAIDAGPTPCADA 192 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAI 206 ST++ + + +LR G L ++ A+ Sbjct: 193 STVIRIS-DGAPMVLREGALPSRAIEDAL 220 >gi|311694079|gb|ADP96952.1| Sua5/YciO/YrdC/YwlC family protein [marine bacterium HP15] Length = 207 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/174 (25%), Positives = 76/174 (43%), Gaps = 10/174 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + L G I PT++ Y + + A R+ I++ + D+S + Sbjct: 17 INQAVDILRRGGVIVYPTDSAYAIGCHLGDKQAADRIKRIRRLDDKHNFTLVCRDLSDIG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVP-CGFTKKL 127 +A VD L K F PGP T +LD S +HP ++ RVP ++L Sbjct: 77 VYAKVDNTQYRLLKNFTPGPYTFILDATSEVPRRLLHP----KRRSVGVRVPDNAIVQEL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 + G P+ + G+ + + ++ E+ LIIDGG G+E+T V Sbjct: 133 LGELGEPIMSSTLILPGETDPMTDPYEIRETLEHELDLIIDGGFC--GMEATTV 184 >gi|253991647|ref|YP_003043003.1| ribosome maturation factor [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253783097|emb|CAQ86262.1| conserved hypothetical Protein [Photorhabdus asymbiotica] Length = 189 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/145 (32%), Positives = 61/145 (42%), Gaps = 6/145 (4%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 MS S A L A IA PTE V+GL D + AI L +KKRP LI Sbjct: 1 MSNEASPAFENVLTALKAEKVIAYPTEAVFGLGCDPDSVKAINELLILKKRPWQKGLILI 60 Query: 64 VSDISMVKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 + ++ + L+ + WPGP+T V+ S+T T T RV Sbjct: 61 ADNYEQLQPYLDDKLLTAKQKEAMFTCWPGPMTWVIPAKSST--SKWLTGQFSTLAVRVS 118 Query: 121 CG-FTKKLIETYGHPLAIPSANRSG 144 K+L YG PL SAN +G Sbjct: 119 DHPLVKQLCTFYGKPLVSTSANLNG 143 >gi|31792494|ref|NP_854987.1| hypothetical protein Mb1333 [Mycobacterium bovis AF2122/97] gi|121637230|ref|YP_977453.1| hypothetical protein BCG_1361 [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|215426623|ref|ZP_03424542.1| hypothetical protein MtubT9_09614 [Mycobacterium tuberculosis T92] gi|224989705|ref|YP_002644392.1| hypothetical protein JTY_1336 [Mycobacterium bovis BCG str. Tokyo 172] gi|260186240|ref|ZP_05763714.1| hypothetical protein MtubCP_09458 [Mycobacterium tuberculosis CPHL_A] gi|260200354|ref|ZP_05767845.1| hypothetical protein MtubT4_09548 [Mycobacterium tuberculosis T46] gi|260204559|ref|ZP_05772050.1| hypothetical protein MtubK8_09663 [Mycobacterium tuberculosis K85] gi|289442740|ref|ZP_06432484.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis T46] gi|289446896|ref|ZP_06436640.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis CPHL_A] gi|289573964|ref|ZP_06454191.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis K85] gi|289749855|ref|ZP_06509233.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|31618083|emb|CAD94194.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97] gi|121492877|emb|CAL71348.1| Conserved hypothetical protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224772818|dbj|BAH25624.1| hypothetical protein JTY_1336 [Mycobacterium bovis BCG str. Tokyo 172] gi|289415659|gb|EFD12899.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis T46] gi|289419854|gb|EFD17055.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis CPHL_A] gi|289538395|gb|EFD42973.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis K85] gi|289690442|gb|EFD57871.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] Length = 217 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 54/203 (26%), Positives = 95/203 (46%), Gaps = 7/203 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S + A + AG + +PT+TVYG+ D+ + +A+ L K R P+ V Sbjct: 14 SRGIVSAVGAIKAGQLVVMPTDTVYGIGADAFDSSAVAALLSAKGRGRDMPVGVLVGSWH 73 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 ++ S+ + L + FWPG L+LV+ + + + L A+ T R+P + Sbjct: 74 TIEGLVYSMPDGARELIRAFWPGALSLVV-VQAPSLQWDLGDAH-GTVMLRMPLHPVAIE 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+ G P+A+ SAN SG + + S + + + +D G S+ STIV++ Sbjct: 132 LLREVG-PMAVSSANISGHPPPVDAEQA-RSQLGDHVAVYLDAGPSEQQAGSTIVDLTGA 189 Query: 187 KKVRILRPGGLEIETLKRAISVE 209 R+LR G + E + + V+ Sbjct: 190 TP-RVLRQGPVSTERIAEVLGVD 211 >gi|325913835|ref|ZP_08176194.1| translation factor SUA5 [Xanthomonas vesicatoria ATCC 35937] gi|325539910|gb|EGD11547.1| translation factor SUA5 [Xanthomonas vesicatoria ATCC 35937] Length = 187 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/184 (26%), Positives = 78/184 (42%), Gaps = 7/184 (3%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 +L A L G IA PTE V+GL D +A+ RL EIK+RP +I S I ++ Sbjct: 6 SLDSAVATLRKGGVIAYPTEAVWGLGCDPAQESAVLRLLEIKRRPVDKGVIVVASGIEVL 65 Query: 71 KKHASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + +D P WPGP T +L + T+ T R+ Sbjct: 66 RGWVDIDALEPARRDEVLASWPGPHTWILPV--TSRAPRWVTGTHDGLAVRISAHPLVVA 123 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L +G PL SAN +G+ + + L ++ I ++ G + + + I + + Sbjct: 124 LCAAWGAPLVSTSANLAGEPPARS-REALDPALLATIDGVLAGDVGGLAQPTPIRDARTG 182 Query: 187 KKVR 190 + +R Sbjct: 183 QSLR 186 >gi|256820827|ref|YP_003142106.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga ochracea DSM 7271] gi|256582410|gb|ACU93545.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga ochracea DSM 7271] Length = 206 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 50/194 (25%), Positives = 85/194 (43%), Gaps = 13/194 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK---RPAMNPLICHVSDIS 68 + + E L G I PT+TVYGL D N A+ ++ IK A +C SD+ Sbjct: 17 INRVVEVLRRGGLIIYPTDTVYGLGCDITNTKALEKIARIKGVKLEKANFSFVC--SDLK 74 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKK 126 + + +D + L K PGP T + + + P KT RVP + Sbjct: 75 NLSDYVKQIDTSTFKLLKRTLPGPYTFI---MQGNNNLPKDFKKKKTVGIRVPDNLIART 131 Query: 127 LIETYGHPLAIPS-ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 ++E G+P+ S + I T ++ ++ L+IDGG + ST++++ Sbjct: 132 IVEKLGNPIVSTSIYDEDDVIEYTTDPELIFEKWQNKVDLVIDGGYGD-NVASTVIDLSG 190 Query: 186 EKKVRILRPGGLEI 199 + ++LR G +I Sbjct: 191 DAP-KVLREGKGDI 203 >gi|302521937|ref|ZP_07274279.1| translation factor SUA5 [Streptomyces sp. SPB78] gi|333024403|ref|ZP_08452467.1| hypothetical protein STTU_1907 [Streptomyces sp. Tu6071] gi|302430832|gb|EFL02648.1| translation factor SUA5 [Streptomyces sp. SPB78] gi|332744255|gb|EGJ74696.1| hypothetical protein STTU_1907 [Streptomyces sp. Tu6071] Length = 215 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 60/220 (27%), Positives = 95/220 (43%), Gaps = 47/220 (21%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR------PAM----N 58 + LR+A + G + +PT+TVYG+ D+ + A+ L K R P + N Sbjct: 14 ATGLREAAAAVRRGELVVLPTDTVYGIGADAFSAEAVGDLLAAKGRGRNMPSPVLIGSPN 73 Query: 59 PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLV--------LDLLSTTDIHPLSTA 110 L V+D S + L FWPG LTLV DL T Sbjct: 74 TLHGLVTDFSET---------AWDLVDAFWPGGLTLVARHQPSLAWDLGDTR-------- 116 Query: 111 NLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQIS---ITNVKHILSSSICKEIPLI 166 T R+P +L+ +G P+A+ S N +G S + +L S+ + Sbjct: 117 --GTVAIRMPLHPVAIELLTEFG-PMAVSSGNLTGHPSPETCDAAQEMLGDSVS----VY 169 Query: 167 IDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAI 206 +DGG + + S+IV+V E V +LR G ++ E L++ + Sbjct: 170 LDGGPTSGNVPSSIVDVSGEVPV-LLRAGVIDAEELRKVV 208 >gi|184200616|ref|YP_001854823.1| hypothetical protein KRH_09700 [Kocuria rhizophila DC2201] gi|183580846|dbj|BAG29317.1| hypothetical protein [Kocuria rhizophila DC2201] Length = 354 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 58/228 (25%), Positives = 94/228 (41%), Gaps = 35/228 (15%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP---LICHVSDISMVKKHASVDPLSL 81 + +PT+TVYG+ D+ + ++ L K R P LI + + S D + Sbjct: 30 VVLPTDTVYGIGCDAFSAPGVQGLLGAKGRTREMPPPVLIARPEVMDALADEISDD--AR 87 Query: 82 HLAKLFWPGPLTLV--------LDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYG 132 LA+ FWPG LT+V DL T T RVP T+ ++E G Sbjct: 88 ALARAFWPGALTIVCWARPSLGWDLGETH----------GTVALRVPDDAVTRAVLERVG 137 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--------GLESTIVNVQ 184 P+A+ SANR+G + + + + L ++ G + STIV+ Sbjct: 138 -PMAVSSANRTGMPAARTAEQA-REMLQDRVALYLEAGPRPVREPAAGARDAASTIVDCT 195 Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAP 232 E V +LR G + ++ L+ + ++ P PG + AP Sbjct: 196 GETPV-VLRHGAITLQRLREVVPAVHGGGTEDAPAPTEPGADPASAAP 242 >gi|326776591|ref|ZP_08235856.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces cf. griseus XylebKG-1] gi|326656924|gb|EGE41770.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces cf. griseus XylebKG-1] Length = 215 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 56/209 (26%), Positives = 87/209 (41%), Gaps = 25/209 (11%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + LR+A + G + +PT+TVYG+ D+ A+ L + K R P + + Sbjct: 14 ATGLREAASAVRRGELVVLPTDTVYGIGADAFTSEAVADLLDAKGRGRNMPTPVLIGSPN 73 Query: 69 MVKKHASVDPLS---LHLAKLFWPGPLTLV--------LDLLSTTDIHPLSTANLKTACF 117 + H V S L FWPG LTLV DL T T Sbjct: 74 TL--HGLVTDFSEEAWELVDAFWPGALTLVAKHQPSLQWDLGDTR----------GTVAI 121 Query: 118 RVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 R+P + T P+A+ SAN +G S + + + + +DGG + + Sbjct: 122 RMPLHPVAIELLTEVGPMAVSSANLTGHPSPEDCDAA-QGMLGDSVSVYLDGGPTPGIVP 180 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAI 206 S+IV+V V +LR G L E L++ + Sbjct: 181 SSIVDVTGATPV-LLRAGALSAEELRKVV 208 >gi|238752653|ref|ZP_04614124.1| Ribosomal modification protein RimN [Yersinia rohdei ATCC 43380] gi|238709080|gb|EEQ01327.1| Ribosomal modification protein RimN [Yersinia rohdei ATCC 43380] Length = 190 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/134 (31%), Positives = 61/134 (45%), Gaps = 6/134 (4%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83 IA PTE V+GL D + A+ L +K+RP LI ++ +K + + LS Sbjct: 23 IAYPTEAVFGLGCDPDSENAVNALLALKQRPWQKGLILIAANYEQLKPYVNDSALSDTQR 82 Query: 84 AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140 LF WPGP+T V+ + + T + + RV ++L YG PL SA Sbjct: 83 ETLFSCWPGPVTWVIP--ARPETPRWLTGHFDSLAVRVSDHPLVQQLCLQYGKPLVSTSA 140 Query: 141 NRSGQISITNVKHI 154 N SGQ V + Sbjct: 141 NLSGQEPCRTVAEV 154 >gi|126666027|ref|ZP_01737007.1| putative translation factor (SUA5) [Marinobacter sp. ELB17] gi|126629349|gb|EAZ99966.1| putative translation factor (SUA5) [Marinobacter sp. ELB17] Length = 206 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/174 (26%), Positives = 76/174 (43%), Gaps = 10/174 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + L G IA PT++ Y L + +A R+ I+K + D+S + Sbjct: 17 INQAVDILRKGGVIAYPTDSGYALGCHLGDKSASDRIKRIRKLDDKHNFTLVCRDLSDIG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVP-CGFTKKL 127 +A VD + + K + PG T +LD S +HP +T RVP L Sbjct: 77 TYAKVDNTTYRMLKTYTPGAYTFILDATSEVPRRLLHP----KRRTIGVRVPDNAVVHAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 + +G P+ + G+ + ++ E+ LIIDGG G+E+T V Sbjct: 133 LGEFGEPIMSSTLILPGETEPMTDPEDIRDALEHELDLIIDGGFC--GMEATTV 184 >gi|17545860|ref|NP_519262.1| hypothetical protein RSc1141 [Ralstonia solanacearum GMI1000] gi|17428154|emb|CAD14843.1| putative rna-binding protein, yrdc [Ralstonia solanacearum GMI1000] Length = 207 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 77/173 (44%), Gaps = 5/173 (2%) Query: 1 MQIMSITDSNAL-RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 QI T L R+A E + AG IA+PT++ Y LA + A+ RL ++ + Sbjct: 5 FQIHPTTPQGRLIRQAVEIIRAGGLIALPTDSCYALACHLDDKAAVERLRRVRGIDEKHH 64 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFR 118 L D+S + A VD K PGP +L+ +T ++ LS + KT R Sbjct: 65 LTLMCRDLSELATFARVDNRQYRAVKAATPGPFVFLLE--ATREVPRRLSHPSRKTIGLR 122 Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 VP L+ G PL + G + N + + + +++ L+IDGG Sbjct: 123 VPDHPIPLALMAELGEPLLSATLQLPGDEAPLNEADAIRALLERQLELVIDGG 175 >gi|149640123|ref|XP_001515000.1| PREDICTED: similar to putative transmembrane protein TA-2 [Ornithorhynchus anatinus] Length = 878 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/187 (25%), Positives = 89/187 (47%), Gaps = 13/187 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++++++ E + G IPT+TVY L P A+ + Y KK+ P+ +S + Sbjct: 613 ASSVKQIAEIMKNGGACGIPTDTVYVLVAACNRPDAVEKAYNTKKQAQDRPMSLWISSLR 672 Query: 69 MVK--KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA-----NLKTACFRVP- 120 ++ KH P+ + WP P+++V+ D L T+ ++ R+P Sbjct: 673 QLEPAKHL-FHPILWDFMEAAWPSPISVVVPRGDWIDQLGLKTSARYVGTPRSIAIRIPD 731 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 C T LI+ G P+A+ SAN +G+ T+ + + + ++ ++ G S + ST+ Sbjct: 732 CSVTTHLIDLVG-PVAVTSANPTGEADTTHHDQVY-AKLGDKVDGVLCAGPSPENIASTV 789 Query: 181 VNVQCEK 187 V+ C K Sbjct: 790 VD--CTK 794 >gi|77166277|ref|YP_344802.1| putative translation factor, SUA5/yciO/yrdC-like [Nitrosococcus oceani ATCC 19707] gi|254435884|ref|ZP_05049391.1| hypothetical protein NOC27_2947 [Nitrosococcus oceani AFC27] gi|123593358|sp|Q3J7C4|RIMN_NITOC RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|76884591|gb|ABA59272.1| translation factor SUA5 [Nitrosococcus oceani ATCC 19707] gi|207088995|gb|EDZ66267.1| hypothetical protein NOC27_2947 [Nitrosococcus oceani AFC27] Length = 185 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 71/162 (43%), Gaps = 11/162 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +R A + G IA PTE V+GL D AI R+ ++K R I +D V+ Sbjct: 8 VRLAARIIRGGGVIAYPTEGVFGLGCDPGRKAAIERILQLKGRSISKGFILIAAD--FVQ 65 Query: 72 KHASVDPLSLHLA---KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + PL+ ++ WPGP+T +L + D+ P T RV L Sbjct: 66 LQSYLLPLTASTRSRLEVTWPGPVTWLLP--ARGDVPPWLRGRYDTLAVRVTAHPLAACL 123 Query: 128 IETYGHPLAIPSANRSGQ---ISITNVKHILSSSICKEIPLI 166 T GH L SANR+G+ + V+ SS+ +P I Sbjct: 124 CRTLGHALVSTSANRAGRPPAQTTLQVRRSFGSSLDYILPGI 165 >gi|189463821|ref|ZP_03012606.1| hypothetical protein BACINT_00154 [Bacteroides intestinalis DSM 17393] gi|189438771|gb|EDV07756.1| hypothetical protein BACINT_00154 [Bacteroides intestinalis DSM 17393] Length = 187 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 76/164 (46%), Gaps = 20/164 (12%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 ++KAC+ ++ G I PT+T++G+ D+ N A+RR+Y+IK+R ++ +V Sbjct: 5 IKKACQVMNEGGVILYPTDTIWGIGCDATNEEAVRRVYQIKQRSDSKAMLV------LVD 58 Query: 72 KHASVDPLSLHLAKLFW------PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124 VD + ++ W PLT++ ++ A + RV F+ Sbjct: 59 SPVKVDFYVQDVPEVAWDLIEVADKPLTIIYS--GARNLASNLIAEDGSVGIRVTNEEFS 116 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 K L + + + SAN SGQ S N S I +E+ ++D Sbjct: 117 KHLCQQFRKAIVSTSANISGQPSPANY-----SEITEELKSMVD 155 >gi|325104975|ref|YP_004274629.1| translation factor SUA5 [Pedobacter saltans DSM 12145] gi|324973823|gb|ADY52807.1| translation factor SUA5 [Pedobacter saltans DSM 12145] Length = 188 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/146 (26%), Positives = 70/146 (47%), Gaps = 3/146 (2%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + + KA E L G I PT+T++G+ D+ NP A+ ++Y +K+R LI + + Sbjct: 4 DEINKALEVLKNGGLILYPTDTIWGIGCDATNPEAVAKVYALKQRTESKSLIILLDTDNK 63 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLI 128 + +A+ P + + P+T++ + ++ P + RV F K+LI Sbjct: 64 LVSYANDIPDVAYDLIEYAENPMTIIFS--NAKNLAPNVINEDGSVGIRVTSHQFCKELI 121 Query: 129 ETYGHPLAIPSANRSGQISITNVKHI 154 + + P+ SAN SG S N +I Sbjct: 122 QRFRKPIVSTSANVSGNPSPKNFSYI 147 >gi|283835700|ref|ZP_06355441.1| hypothetical protein CIT292_10092 [Citrobacter youngae ATCC 29220] gi|291068379|gb|EFE06488.1| Sua5/YciO/YrdC/YwlC family protein [Citrobacter youngae ATCC 29220] Length = 190 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/136 (33%), Positives = 64/136 (47%), Gaps = 10/136 (7%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A E L IA PTE V+G+ D + TA+ RL +K+RP LI ++ +K + Sbjct: 13 AIEVLKQEKVIAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIAANFDQLKPY- 71 Query: 75 SVDPLSLHLAK---LF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLI 128 +D +L A+ +F WPGP+T V +TT T + RV L Sbjct: 72 -IDDSTLTDAQRQAVFSRWPGPVTFVFPAPATTPR--WLTGRFDSLAVRVTDHPLVVALC 128 Query: 129 ETYGHPLAIPSANRSG 144 + YG PL SAN SG Sbjct: 129 QAYGKPLVSTSANLSG 144 >gi|222111934|ref|YP_002554198.1| sua5/ycio/yrdc/ywlc family protein [Acidovorax ebreus TPSY] gi|221731378|gb|ACM34198.1| Sua5/YciO/YrdC/YwlC family protein [Acidovorax ebreus TPSY] Length = 211 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 76/161 (47%), Gaps = 4/161 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++A L +G +A+PT++ Y L + A+ R+ I++ + L D+S + Sbjct: 17 LKQAATLLSSGGILAVPTDSSYALVCRLDDKDAVDRIRRIRQINDKHHLTLLCRDLSELA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129 +A VD L KL PGP T +LD +T ++ +S KT RVP + L+E Sbjct: 77 NYAHVDNRQYRLLKLATPGPYTFILD--ATKEVPRRVSHPQRKTIGLRVPDRKGLQMLLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 +G PL + +G+ N + K++ I+D G Sbjct: 135 LHGAPLLATTLIPAGESEPLNDPQEIRERFEKQLDGILDAG 175 >gi|326799831|ref|YP_004317650.1| Sua5/YciO/YrdC/YwlC family protein [Sphingobacterium sp. 21] gi|326550595|gb|ADZ78980.1| Sua5/YciO/YrdC/YwlC family protein [Sphingobacterium sp. 21] Length = 188 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 77/161 (47%), Gaps = 4/161 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +N + +A + L +G I PT+T++G+ D+ NP A+ ++Y++K R LI + + Sbjct: 3 NNDINQALQVLKSGGVILYPTDTIWGIGCDATNPEAVDKVYQLKGRSKDKSLIILLDNEH 62 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + P + + PLT++ D ++ P A + R+ F ++L Sbjct: 63 KLASYVQEIPDVAYQLIEYTEKPLTIIYD--GAKNLAPNLVAEDGSIGIRIAKHRFCEQL 120 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 I+ + P+ SAN SG+ S N I S I + I++ Sbjct: 121 IQRFRKPIVSTSANISGEPSPKNFLEI-SDEIKNGVDYIVE 160 >gi|89890533|ref|ZP_01202043.1| SUA5/YciO/YrdC/YwlC domain protein [Flavobacteria bacterium BBFL7] gi|89517448|gb|EAS20105.1| SUA5/YciO/YrdC/YwlC domain protein [Flavobacteria bacterium BBFL7] Length = 216 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/185 (28%), Positives = 87/185 (47%), Gaps = 7/185 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +R+A L G I PT+T+YG+ D+ N AI LY+IKKR LI V M+ Sbjct: 35 VREAVTALKKGKVILYPTDTIYGIGCDATNYDAIEELYKIKKRDRSKSLIILVDSFEMLD 94 Query: 72 KH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 ++ V ++ + KL PLT++ D + ++ N T RV + LI Sbjct: 95 RYIEEVPEMAWQVLKLN-KKPLTIIYDRPKAVAENLIAADN--TLAIRVTNDPVCRALIR 151 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL-ESTIVNVQCEKK 188 P+ SAN SG+ + I S + + I+D ++K + S+I+ + + Sbjct: 152 GLRKPIVSTSANLSGEKTPVGFIDI-SEELKSRVDHILDLPLAKTNVPPSSIIKISNDGT 210 Query: 189 VRILR 193 ++ILR Sbjct: 211 MKILR 215 >gi|254821300|ref|ZP_05226301.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium intracellulare ATCC 13950] Length = 219 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 54/194 (27%), Positives = 86/194 (44%), Gaps = 7/194 (3%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-L 83 + +PT+TVYG+ D+ N A+ L K R P+ V ++ P L Sbjct: 30 VVMPTDTVYGIGADAFNSAAVSVLLSAKGRGRDMPVGVLVGSWHTIEGLVYTMPDGARDL 89 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142 + FWPG L+LV+ + L A T R+P +L+ G PLA+ SAN Sbjct: 90 IRAFWPGALSLVVTQAPSLQWD-LGDAR-GTVMLRMPLHPVAIELLREVG-PLAVSSANI 146 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202 SG+ + + + + + ++ G S+ G STIV++ RILR G + E + Sbjct: 147 SGRTAAVDAGEA-RDQLGDLVDVYLEAGPSEQGAASTIVDLTGPTP-RILRLGPVSAERI 204 Query: 203 KRAISVELEYCVDE 216 + V+ E E Sbjct: 205 AEVLGVDPEGLTAE 218 >gi|318607705|emb|CBY29203.1| sua5 YciO YrdC YwlC family protein [Yersinia enterocolitica subsp. palearctica Y11] Length = 195 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/143 (30%), Positives = 63/143 (44%), Gaps = 14/143 (9%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 AL + L IA PTE V+GL D + A+ L +K+RP LI ++ + Sbjct: 14 ALSDVLQALQQEEVIAYPTEAVFGLGCDPDSEKAVNALLALKQRPWQKGLILIAANYEQL 73 Query: 71 KKHASVDPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLS----TANLKTACFRVPCG- 122 K + L+ +F WPGP+T V+ HP + T + + RV Sbjct: 74 KPYVDDSALTDSQRETIFSVWPGPVTWVI------PTHPETPRWLTGSFDSLAVRVSDHP 127 Query: 123 FTKKLIETYGHPLAIPSANRSGQ 145 ++L YG PL SAN SGQ Sbjct: 128 LVQQLCSQYGKPLVSTSANLSGQ 150 >gi|123444060|ref|YP_001008030.1| putative ribosome maturation factor [Yersinia enterocolitica subsp. enterocolitica 8081] gi|212288235|sp|A1JRY6|RIMN_YERE8 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|122091021|emb|CAL13904.1| conserved hypothetical protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 190 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 62/138 (44%), Gaps = 14/138 (10%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83 IA PTE V+GL D + A+ L +K+RP LI ++ +K + L+ Sbjct: 23 IAYPTEAVFGLGCDPDSEKAVNALLALKQRPWQKGLILIAANYEQLKPYVDDSALTDSQR 82 Query: 84 AKLF--WPGPLTLVLDLLSTTDIHPLS----TANLKTACFRVPCG-FTKKLIETYGHPLA 136 +F WPGP+T V+ HP + T + + RV ++L YG PL Sbjct: 83 ETIFSVWPGPVTWVI------PTHPETPRWLTGSFDSLAVRVSDHPLVQQLCSQYGKPLV 136 Query: 137 IPSANRSGQISITNVKHI 154 SAN SGQ ++ + Sbjct: 137 STSANLSGQEPCRTIEEV 154 >gi|110834252|ref|YP_693111.1| Sua5/YciO/YrdC/YwlC family protein [Alcanivorax borkumensis SK2] gi|110647363|emb|CAL16839.1| Sua5/YciO/YrdC/YwlC family protein [Alcanivorax borkumensis SK2] Length = 207 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/196 (25%), Positives = 93/196 (47%), Gaps = 11/196 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP--LICHVSDISM 69 +R+A E + G IA PT+T Y L A+ RL +++ + L+CH D+S Sbjct: 17 IRQAVEVIRGGGLIAYPTDTTYALGCGIGEKNALDRLIRLRQLDKKHEFTLLCH--DLSA 74 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKKL 127 + +A VD L K PGP T +L TT++ L +T RVP + L Sbjct: 75 LAIYAKVDNPDYRLLKAHTPGPYTFILQ--GTTEVPRRLMHPKKRTIGIRVPDHAICQAL 132 Query: 128 IETYGHPLAIPSANR-SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 + +G P+ + + + + +T+ + + + + L+IDGG +E+T++++ Sbjct: 133 LAEHGEPIMTSTCHLPNDEFPLTDPQDV-RDFLDHHVDLVIDGGFCGT-VETTVISLSQG 190 Query: 187 KKVRILRPGGLEIETL 202 + ++R G I+ + Sbjct: 191 EGPEVVREGAGPIDAI 206 >gi|241767937|ref|ZP_04765486.1| Sua5/YciO/YrdC/YwlC family protein [Acidovorax delafieldii 2AN] gi|241360895|gb|EER57709.1| Sua5/YciO/YrdC/YwlC family protein [Acidovorax delafieldii 2AN] Length = 203 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 80/172 (46%), Gaps = 6/172 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++A L G +A+PT++ Y L + A+ RL I++ + L D+S + Sbjct: 17 LKQAAALLQKGGVVAVPTDSSYALVCHLDDKDAVDRLRRIRQVDDKHHLTLLCRDLSELA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129 +A VD L KL PGP T +L+ +T ++ +S + KT RVP + L+E Sbjct: 77 NYARVDNRQYRLLKLGTPGPYTFILE--ATKEVPRRVSHPSRKTIGLRVPDRKGLQLLLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 +G PL + +G+ + N + K + I+D G LE T V Sbjct: 135 LHGAPLLATTLIPAGETAPLNDPQEIRERYEKLVDAIVDAGACP--LEPTTV 184 >gi|295134942|ref|YP_003585618.1| YrdC domain-containing protein [Zunongwangia profunda SM-A87] gi|294982957|gb|ADF53422.1| YrdC domain-containing protein [Zunongwangia profunda SM-A87] Length = 189 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 82/177 (46%), Gaps = 5/177 (2%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L G I PT+TV+G+ D+ N AI +++ +KKR +IC VSD M+ ++ P Sbjct: 15 LKKGGIILYPTDTVWGIGCDATNADAIDKIFALKKRAESKSMICLVSDFKMLNEYVEEVP 74 Query: 79 LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAI 137 + + P +++ D + A T RV F K+L + PL Sbjct: 75 EVAYDILKYAAKPTSIIYD--DPIRVAENIIAEDNTLAIRVTKDPFCKELTKRLRRPLVS 132 Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKKVRILR 193 SAN SGQ + + I S I K + +++ SK + S I+ + + V+++R Sbjct: 133 TSANISGQPTPASFSQI-SPEILKGVDYVVNLHRSKKSSKPSAIIKLGNDGTVKVIR 188 >gi|322831110|ref|YP_004211137.1| SUA5/yciO/yrdC domain protein [Rahnella sp. Y9602] gi|321166311|gb|ADW72010.1| SUA5/yciO/yrdC domain protein [Rahnella sp. Y9602] Length = 189 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/128 (34%), Positives = 60/128 (46%), Gaps = 12/128 (9%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 IA PTE V+GL D + A+ L +KKRP LI + + + +D SL Sbjct: 22 IAYPTEAVFGLGCDPDSEQAVEALLALKKRPKDKGLILIADNYQQLLPY--IDDSSLTEQ 79 Query: 85 KL-----FWPGPLTLVLDLL-STTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAI 137 +L FWPGP+T V+ ST D T + RV K+L + +G PL Sbjct: 80 QLAHVVSFWPGPVTWVMPAKPSTPD---WLTGRFTSLAVRVTDHPLVKELCQKFGKPLVS 136 Query: 138 PSANRSGQ 145 SAN +GQ Sbjct: 137 TSANLNGQ 144 >gi|325955237|ref|YP_004238897.1| Sua5/YciO/YrdC/YwlC family protein [Weeksella virosa DSM 16922] gi|323437855|gb|ADX68319.1| Sua5/YciO/YrdC/YwlC family protein [Weeksella virosa DSM 16922] Length = 207 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 55/197 (27%), Positives = 90/197 (45%), Gaps = 17/197 (8%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIR---RLYEIKKRPAMNPLICHVSDI 67 A+ + E L G I P++TVYGL D N A+ RL +K + ++C+ D+ Sbjct: 16 AIDQVVEVLKQGGLIIYPSDTVYGLGCDITNYKAMENLARLKGVKLDKSQFSIVCN--DL 73 Query: 68 SMVKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 S + P+S + K PGP T VL PL+ KT RVP Sbjct: 74 SHLSNFTR--PISNSTFKVLKRALPGPFTFVLQASGNL---PLAYKGKKTVGIRVPDHLV 128 Query: 125 -KKLIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 ++++E G+P+A S +I T +++ K + ++ID G + S+I++ Sbjct: 129 PRRIVEKLGNPIASTSIYDEDEILEYTTDPELIAEKWDKLVDVVIDSGYGD-NVASSIID 187 Query: 183 VQCEKKVRILRPGGLEI 199 E ++ ILR G +I Sbjct: 188 A-TENEMVILREGKGDI 203 >gi|319899941|ref|YP_004159669.1| translation factor SUA5 [Bacteroides helcogenes P 36-108] gi|319414972|gb|ADV42083.1| translation factor SUA5 [Bacteroides helcogenes P 36-108] Length = 187 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 15/141 (10%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 ++KAC+ + G I PT+T++G+ D+ N A+RR+YEIK+R ++ +V Sbjct: 5 IKKACQVMSEGGIILYPTDTIWGIGCDATNEDAVRRVYEIKQRSDSKAMLV------LVD 58 Query: 72 KHASVDPLSLHLAKLFW------PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124 VD + ++ W PLT++ ++ A + RV F+ Sbjct: 59 SSVKVDFYVQDVPEIAWDLIDLADKPLTVIYS--GARNLASNLLAEDGSVGIRVTNEEFS 116 Query: 125 KKLIETYGHPLAIPSANRSGQ 145 K+L + + SAN SGQ Sbjct: 117 KRLCRQFRKAIVSTSANVSGQ 137 >gi|238921405|ref|YP_002934920.1| hypothetical protein NT01EI_3556 [Edwardsiella ictaluri 93-146] gi|238870974|gb|ACR70685.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 189 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/140 (32%), Positives = 64/140 (45%), Gaps = 6/140 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S++L A L IA PTE V+GL D + A++ L +K+RP LI +D Sbjct: 6 SDSLAAAVAALRQQRVIAYPTEAVFGLGCDPDSEPAVQALLGLKQRPWDKGLILIAADYQ 65 Query: 69 MVKKHASVDPL-SLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 + + + L A +F WPGP+T V+ + D T T RV Sbjct: 66 QLLPYVCDEALQGERRAAVFSHWPGPVTWVMP--ARADTPRWLTGRFSTLAVRVSAHPQV 123 Query: 125 KKLIETYGHPLAIPSANRSG 144 ++L +YG PL SAN SG Sbjct: 124 QQLCRSYGKPLVSTSANLSG 143 >gi|317503445|ref|ZP_07961483.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella salivae DSM 15606] gi|315665433|gb|EFV05062.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella salivae DSM 15606] Length = 189 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 71/151 (47%), Gaps = 5/151 (3%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV- 64 +T +R A E + G I PT+TV+G+ D+ N A+ ++Y IKKR LIC V Sbjct: 1 MTKEEDIRNAVECMRKGGVILYPTDTVWGIGCDATNKEAVAKVYAIKKRDDSKALICLVD 60 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 SD + + +V ++ L P T++LD ++ A + R+ F Sbjct: 61 SDARLQRCFRNVPAVAWELLDAA-VKPTTVILD--DAVNVAENLVAEDGSLAVRITNEPF 117 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHI 154 +K+L + P+ SAN SG+ + N I Sbjct: 118 SKELCFRFQKPIVSTSANVSGEPAAANYGDI 148 >gi|283850258|ref|ZP_06367547.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio sp. FW1012B] gi|283574284|gb|EFC22255.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio sp. FW1012B] Length = 212 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/206 (25%), Positives = 88/206 (42%), Gaps = 18/206 (8%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L A L G + PTET + L + + A+ R+ IK RPA PL V +++ ++ Sbjct: 6 LATAARVLSQGGCLVYPTETFFALGALATHAGALARIVAIKARPATKPLPLLVGELAHLE 65 Query: 72 K---HASVD-PLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 + +D PL LA FWPGPL+LV+ +K RV +T Sbjct: 66 RIVPDGFLDGPLGEDFRALAGRFWPGPLSLVVPCREEL------PGLVKDGQGRVSVRWT 119 Query: 125 -----KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 L G + SAN SG+ + + + + L+ +G G ST Sbjct: 120 PHPTAAALCRLAGGAIVATSANVSGKPPAARAEDLDPAVVSAADGLVTEGPRPSGGQAST 179 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRA 205 ++ + +++ + R G + + TL+ A Sbjct: 180 VIGLLGGRRLVLFRDGAVAVATLRAA 205 >gi|325103134|ref|YP_004272788.1| Sua5/YciO/YrdC/YwlC family protein [Pedobacter saltans DSM 12145] gi|324971982|gb|ADY50966.1| Sua5/YciO/YrdC/YwlC family protein [Pedobacter saltans DSM 12145] Length = 206 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/190 (23%), Positives = 87/190 (45%), Gaps = 12/190 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYE---IKKRPAMNPLICHVSDIS 68 +++ + L G I PT+T+YG+ D N AI ++ + IK A +CH D+S Sbjct: 15 VQQVVDILKKGGIIIYPTDTIYGMGCDITNQKAIEKIAQLKGIKPEKANFSFVCH--DLS 72 Query: 69 MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126 + ++ +D + L K PG T + + + +++ L + KT RVP ++ Sbjct: 73 HISQYVKPLDNSTFRLLKKALPGAFTFIFE--ANSNVPKLLASKKKTVGIRVPDNNIARE 130 Query: 127 LIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 ++ G+P+ S + I + ++ + +++DGG + ST+V+ Sbjct: 131 IVRMLGNPILSTSIRDDDEIIEYSTDPELIYEKYKDLVDVVVDGGYGN-NVASTVVDC-T 188 Query: 186 EKKVRILRPG 195 E I+R G Sbjct: 189 EGDFEIVRQG 198 >gi|218439515|ref|YP_002377844.1| SUA5/yciO/yrdC domain protein [Cyanothece sp. PCC 7424] gi|218172243|gb|ACK70976.1| SUA5/yciO/yrdC domain protein [Cyanothece sp. PCC 7424] Length = 212 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 56/203 (27%), Positives = 95/203 (46%), Gaps = 9/203 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 N +R+ +FL+AG I +PT+ Y L + P AI ++ ++K + PLI +++ Sbjct: 11 NLVREIEDFLEAGEVIILPTDISYILVAHAFKPRAIAKIAQLKGWNSPQPLIL-LTNRKK 69 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVL-DLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128 V++ V P S L F P P+TL++ S D ++L AC P F L+ Sbjct: 70 VEEFGVVSPASGKLIDHF-PYPITLIIPKKKSIPDSITAQHSSLFIAC---PDQFIYDLV 125 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 + P+ +A S + + ++PLI+DGG K + T+++ E Sbjct: 126 DQISFPMVCTTAGFSADYKARRYRTAI-QLFEGQVPLIVDGGDCKYDSKGTLIDCTLETP 184 Query: 189 VRILRPGGLEIETLKRAISVELE 211 IL G + ++ L R I E+E Sbjct: 185 T-ILNFGTVSVDDL-REILPEIE 205 >gi|150024959|ref|YP_001295785.1| translation factor [Flavobacterium psychrophilum JIP02/86] gi|149771500|emb|CAL42969.1| Putative translation factor [Flavobacterium psychrophilum JIP02/86] Length = 206 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 88/198 (44%), Gaps = 13/198 (6%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK---RPAMNPLICHVSDI 67 A++K + L G I PT+TVYGL D N A+ R+ +IK A +CH D+ Sbjct: 16 AIKKVVDVLKNGGLIIYPTDTVYGLGCDITNTKALERIAKIKGIKLEKANFSFVCH--DL 73 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125 S + + +D + + K PGP T + L + P T RVP Sbjct: 74 SNISDYVKQIDTATFKILKRALPGPYTFI---LPGNNNLPKEFKKKTTVGIRVPDNNIAL 130 Query: 126 KLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 ++++ G+P+ S + + I T ++ + L+IDGG + STI+++ Sbjct: 131 EIVKMLGNPIVSTSIHDDDEVIEYTTDPELIFEKWQNLVDLVIDGGYGD-NVGSTIIDLS 189 Query: 185 CEKKVRILRPGGLEIETL 202 + ++R G ++ L Sbjct: 190 GHEP-EVIREGKGSLDIL 206 >gi|315224006|ref|ZP_07865847.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga ochracea F0287] gi|314945977|gb|EFS97985.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga ochracea F0287] Length = 206 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/197 (25%), Positives = 86/197 (43%), Gaps = 13/197 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK---RPAMNPLIC-HVSDI 67 + + E L G I PT+TVYGL D N A+ ++ IK A +C + ++ Sbjct: 17 INRVVEVLRRGGLIIYPTDTVYGLGCDITNTKALEKIARIKGVKLEKANFSFVCPDLKNL 76 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKK 126 S K +D + L K PGP T + + + P KT RVP + Sbjct: 77 SDYVKQ--IDTSTFKLLKRTLPGPYTFI---MQGNNNLPKDFKKKKTVGIRVPDNLIART 131 Query: 127 LIETYGHPLAIPS-ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 ++E G+P+ S + I T ++ ++ L+IDGG + ST++++ Sbjct: 132 IVEKLGNPIVSTSIYDEDDVIEYTTDPELIFEKWQNKVDLVIDGGYGD-NVASTVIDLSG 190 Query: 186 EKKVRILRPGGLEIETL 202 + V +LR G +I+ Sbjct: 191 DAPV-VLREGKGDIDIF 206 >gi|332701317|ref|ZP_08421405.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio africanus str. Walvis Bay] gi|332551466|gb|EGJ48510.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio africanus str. Walvis Bay] Length = 206 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/200 (25%), Positives = 88/200 (44%), Gaps = 8/200 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL---ICHVSD 66 + A E + G + PTET+YGL + P A R+ +K RP PL + Sbjct: 2 TSFHAAIEAIKRGGVVIYPTETLYGLGGSAFLPEAAARVCRLKGRPEGKPLPLVVGSREQ 61 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCGFTK 125 + +V + D LA LFWPGPL++++ + D+ P + A T+ Sbjct: 62 VGLVTELEDSD--FARLADLFWPGPLSIIVP--ARRDLAPQVKDAEGLTSLRWTAHATAA 117 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 L G PL SAN SG+ + + + + + + +++ G ST+V + Sbjct: 118 ALCLESGAPLIATSANLSGRPAAARPEDLDPALLAEVDAAVLEHPWPSGGAASTVVRLLG 177 Query: 186 EKKVRILRPGGLEIETLKRA 205 ++ +LR G + L++A Sbjct: 178 CCRLEVLRIGAVPARVLEQA 197 >gi|282879660|ref|ZP_06288391.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella timonensis CRIS 5C-B1] gi|281306608|gb|EFA98637.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella timonensis CRIS 5C-B1] Length = 189 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/144 (27%), Positives = 67/144 (46%), Gaps = 3/144 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 ++ A E + G I PT+TV+G+ D+ N A+ ++Y+IKKR LIC V + ++ Sbjct: 7 IKNAIEVMKQGGVILYPTDTVWGIGCDATNAEAVAKVYKIKKRDDSKALICLVDSDARLQ 66 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 ++ P P T++LD ++ P A + R+ F+ +L Sbjct: 67 RYVRNVPNVAWDILDIATKPTTIILD--GAINLAPNLIAEDGSIALRITKEPFSHELCYR 124 Query: 131 YGHPLAIPSANRSGQISITNVKHI 154 + PL SAN SG+ + N I Sbjct: 125 FQKPLVSTSANISGEPAAANYNDI 148 >gi|46190984|ref|ZP_00120796.2| COG0009: Putative translation factor (SUA5) [Bifidobacterium longum DJO10A] Length = 186 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 51/184 (27%), Positives = 78/184 (42%), Gaps = 19/184 (10%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-LAKLFWPG--- 90 +A D RN AI R+Y +K+RP L ++ + + P L+ L+ F PG Sbjct: 1 MACDPRNKAAIDRIYRLKRRPRYKALQVLLASTDQLDELGLDLPSPLNRLSAAFLPGAFS 60 Query: 91 ------PLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSG 144 P + L T D P T R+P I PLA SANRSG Sbjct: 61 PIAVARPDCTLETLADTADGRP------GTQGIRIPNSALCLAILKATGPLAASSANRSG 114 Query: 145 QISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ--CEKKVRILRPGGLEIETL 202 S V+ + + E+ L +DGG ++ + ST+V + ILR G + + Sbjct: 115 DESAQTVQEAV-DAFGSEVDLYLDGGPTQGHVSSTVVKADPYARDGIEILREGVIAQNVI 173 Query: 203 KRAI 206 ++A+ Sbjct: 174 RKAL 177 >gi|89074767|ref|ZP_01161225.1| Putative Sua5/YciO/YrdC family protein [Photobacterium sp. SKA34] gi|89049531|gb|EAR55092.1| Putative Sua5/YciO/YrdC family protein [Photobacterium sp. SKA34] Length = 185 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 58/131 (44%), Gaps = 6/131 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L G I PTE V+G+ D N A+ +L IK+RP LI ++ + + Sbjct: 11 LKQGEVIGYPTEAVFGVGCDPDNQDAVEKLLAIKQRPVEKGLILIAANYDQLLSYIDESQ 70 Query: 79 LSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134 L+ + WPGP+T V+ + ++ T T RV ++L +G P Sbjct: 71 LTEQQKQTVMATWPGPVTWVMP--TKPNVPSFLTGQFTTIAVRVSDHPLVQRLCLEFGKP 128 Query: 135 LAIPSANRSGQ 145 + SAN +GQ Sbjct: 129 ITSTSANLTGQ 139 >gi|318060716|ref|ZP_07979439.1| hypothetical protein SSA3_22428 [Streptomyces sp. SA3_actG] gi|318075507|ref|ZP_07982839.1| hypothetical protein SSA3_01992 [Streptomyces sp. SA3_actF] Length = 215 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 59/220 (26%), Positives = 95/220 (43%), Gaps = 47/220 (21%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR------PAM----N 58 + LR+A + G + +PT+TVYG+ D+ + A+ L K R P + N Sbjct: 14 ATGLREAAAAVRRGELVVLPTDTVYGIGADAFSAEAVGDLLAAKGRGRNMPSPVLIGSPN 73 Query: 59 PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLV--------LDLLSTTDIHPLSTA 110 L V+D S + L FWPG LTLV DL T Sbjct: 74 TLHGLVTDFSET---------AWDLVDAFWPGGLTLVARHQPSLAWDLGDTR-------- 116 Query: 111 NLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQ---ISITNVKHILSSSICKEIPLI 166 T R+P +L+ +G P+A+ S N +G + + +L S+ + Sbjct: 117 --GTVAIRMPLHPVAIELLTEFG-PMAVSSGNLTGHPAPETCDAAQEMLGDSVS----VY 169 Query: 167 IDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAI 206 +DGG + + S+IV+V E V +LR G ++ E L++ + Sbjct: 170 LDGGPTSGNVPSSIVDVSGEVPV-LLRAGVIDAEELRKVV 208 >gi|108800849|ref|YP_641046.1| translation factor SUA5 [Mycobacterium sp. MCS] gi|119869989|ref|YP_939941.1| translation factor SUA5 [Mycobacterium sp. KMS] gi|126436447|ref|YP_001072138.1| translation factor SUA5 [Mycobacterium sp. JLS] gi|108771268|gb|ABG09990.1| translation factor SUA5 [Mycobacterium sp. MCS] gi|119696078|gb|ABL93151.1| translation factor SUA5 [Mycobacterium sp. KMS] gi|126236247|gb|ABN99647.1| translation factor SUA5 [Mycobacterium sp. JLS] Length = 218 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 62/227 (27%), Positives = 96/227 (42%), Gaps = 33/227 (14%) Query: 2 QIMSITD----SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 Q+ TD + + A L G + +PT+TVYG+ D+ N A+ L K R Sbjct: 3 QLFDCTDPDNRATGIAAAVSALKDGGLVVLPTDTVYGIGADAFNNEAVAALLAAKGRGRD 62 Query: 58 NPLICHVSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVL--------DLLSTTDIHPLS 108 P+ V ++ P + L + FWPG L+LV+ DL D H Sbjct: 63 MPVPVLVGSWHTIEGLVYTVPHTARELIRAFWPGALSLVVRQAPSLPWDL---GDAH--- 116 Query: 109 TANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQ---ISITNVKHILSSSICKEIP 164 T R+P +L+ G P+A+ SAN SG+ +S + + L + Sbjct: 117 ----GTVMLRMPLHPVAIELLREVG-PMAVSSANISGRPAAVSAADAREQLG----DLVD 167 Query: 165 LIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELE 211 + +D G S+ STIV++ RILR G + E + + V E Sbjct: 168 VYLDAGPSEQQAASTIVDLSGAHP-RILRTGPVTAEAVAEVLGVNTE 213 >gi|300721401|ref|YP_003710672.1| putative RNA-binding protein [Xenorhabdus nematophila ATCC 19061] gi|297627889|emb|CBJ88435.1| putative RNA-binding protein with unique protein fold, with YrdC/RibB domain [Xenorhabdus nematophila ATCC 19061] Length = 189 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 48/146 (32%), Positives = 60/146 (41%), Gaps = 8/146 (5%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 MS S A L G IA PTE V+GL D + A++ L +K RP LI Sbjct: 1 MSNEISPAFDSIVTALKEGKVIAYPTEAVFGLGCDPDSENAVQELLALKNRPWEKGLILI 60 Query: 64 VSDISMVKKHASVDPLSLHLAKL---FWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRV 119 + + + LS + FWPGP+T V + I P T T RV Sbjct: 61 ADNYERLCSYIDDVQLSDEQKETIFSFWPGPVTWV---IPAKKITPKWLTGKFSTLAVRV 117 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSG 144 K+L YG PL SAN SG Sbjct: 118 TDHPLVKQLCSLYGKPLVSTSANLSG 143 >gi|239944289|ref|ZP_04696226.1| hypothetical protein SrosN15_25025 [Streptomyces roseosporus NRRL 15998] gi|239990744|ref|ZP_04711408.1| hypothetical protein SrosN1_25792 [Streptomyces roseosporus NRRL 11379] gi|291447757|ref|ZP_06587147.1| translation factor SUA5 [Streptomyces roseosporus NRRL 15998] gi|291350704|gb|EFE77608.1| translation factor SUA5 [Streptomyces roseosporus NRRL 15998] Length = 215 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 55/209 (26%), Positives = 87/209 (41%), Gaps = 25/209 (11%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + LR+A + G + +PT+TVYG+ D+ A+ L + K R P + + Sbjct: 14 TTGLREAASAVRRGELVVLPTDTVYGIGADAFTSEAVADLLDAKGRGRNMPTPVLIGSPN 73 Query: 69 MVKKHASVDPLS---LHLAKLFWPGPLTLV--------LDLLSTTDIHPLSTANLKTACF 117 + H V S L FWPG LTLV DL T T Sbjct: 74 TL--HGLVTDFSEEAWELVDAFWPGALTLVARHQPSLQWDLGDTR----------GTVAI 121 Query: 118 RVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 R+P + T P+A+ SAN +G + + + + + +DGG + + Sbjct: 122 RMPLHPVAIELLTEVGPMAVSSANLTGHPAPEDCDAA-QGMLGDSVSVYLDGGPTPGIVP 180 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAI 206 S+IV+V V +LR G L E L++ + Sbjct: 181 SSIVDVTGATPV-LLRAGALSAEELRKVV 208 >gi|197287104|ref|YP_002152976.1| ribosome maturation factor [Proteus mirabilis HI4320] gi|194684591|emb|CAR46453.1| putative RNA-binding protein [Proteus mirabilis HI4320] Length = 189 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 58/124 (46%), Gaps = 6/124 (4%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL-HL 83 IA PTE V+G+ D + +A+ L E+K+R LI + +K + + L+ Sbjct: 22 IAYPTEAVFGVGCDPDSESAVMALLELKQRAIEKGLILIADNYEQLKPYIDDNALTQEQR 81 Query: 84 AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140 ++F WPGP+T V+ STT T + RV K L YG PL SA Sbjct: 82 ERMFASWPGPITWVIPAKSTT--PKWLTGRFSSLAVRVTDHPIVKALCVAYGKPLVSTSA 139 Query: 141 NRSG 144 N SG Sbjct: 140 NLSG 143 >gi|296104990|ref|YP_003615136.1| putative ribosome maturation factor [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059449|gb|ADF64187.1| putative ribosome maturation factor [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 200 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 67/153 (43%), Gaps = 6/153 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ A E L IA PTE V+G+ D + TA+ RL +K+RP LI ++ Sbjct: 17 TGSIAHAVEVLKNEEVIAYPTEAVFGVGCDPDSETAVNRLLTLKQRPVEKGLILIAANYE 76 Query: 69 MVKKH---ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 +K + + + P WPGP+T V TT T + RV Sbjct: 77 QLKPYIDDSMLTPAQRDTIFSAWPGPVTFVFPAQPTTPR--WLTGRFDSLAVRVTDHPLV 134 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSS 157 +L +G PL SAN +GQ + + +L+ Sbjct: 135 VELCLAFGKPLVSTSANLTGQPPCRSTEEVLAQ 167 >gi|284923289|emb|CBG36383.1| conserved hypothetical protein [Escherichia coli 042] Length = 190 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/142 (31%), Positives = 67/142 (47%), Gaps = 10/142 (7%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +A+ A + L+ IA PTE V+G+ D + TA+ L E+K+RP LI ++ Sbjct: 7 GDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMLLLELKQRPVDKGLILIAANYE 66 Query: 69 MVKKHASVDPLSLHLAK---LF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 ++ + +D L A+ +F WPGP+T V +TT T + RV Sbjct: 67 QLRPY--IDDTMLTDAQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHP 122 Query: 123 FTKKLIETYGHPLAIPSANRSG 144 L + YG PL SAN SG Sbjct: 123 LVVALCQAYGKPLVSTSANLSG 144 >gi|282851603|ref|ZP_06260968.1| conserved domain protein [Lactobacillus gasseri 224-1] gi|282557571|gb|EFB63168.1| conserved domain protein [Lactobacillus gasseri 224-1] Length = 82 Score = 53.9 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 28/65 (43%), Positives = 39/65 (60%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 +A E L G +A PTETVYGL + N A++ +Y K RP+ NPLI VSD M++ + Sbjct: 13 EAVELLKKGELVAFPTETVYGLGALATNEKAVKGVYAAKGRPSDNPLIVTVSDEKMMENY 72 Query: 74 ASVDP 78 + P Sbjct: 73 VNEVP 77 >gi|332163223|ref|YP_004299800.1| putative ribosome maturation factor [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325667453|gb|ADZ44097.1| putative ribosome maturation factor [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330861814|emb|CBX71986.1| putative ribosome maturation factor rimN [Yersinia enterocolitica W22703] Length = 181 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 59/129 (45%), Gaps = 14/129 (10%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83 IA PTE V+GL D + A+ L +K+RP LI ++ +K + L+ Sbjct: 14 IAYPTEAVFGLGCDPDSEKAVNALLALKQRPWQKGLILIAANYEQLKPYVDDSALTDSQR 73 Query: 84 AKLF--WPGPLTLVLDLLSTTDIHPLS----TANLKTACFRVPCG-FTKKLIETYGHPLA 136 +F WPGP+T V+ HP + T + + RV ++L YG PL Sbjct: 74 ETIFSVWPGPVTWVI------PTHPETPRWLTGSFDSLAVRVSDHPLVQQLCSQYGKPLV 127 Query: 137 IPSANRSGQ 145 SAN SGQ Sbjct: 128 STSANLSGQ 136 >gi|328885061|emb|CCA58300.1| YrdC or Sua5 family protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA [Streptomyces venezuelae ATCC 10712] Length = 215 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 56/203 (27%), Positives = 89/203 (43%), Gaps = 15/203 (7%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 LR+A + G + +PT+TVYG+ D+ + A+ L K R P + + Sbjct: 15 TGLREAASAVRRGELVVLPTDTVYGIGADAFSSEAVADLLAAKGRGRNMPTPVLIGSPNT 74 Query: 70 VKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126 + H V S L FWPG LTLV + T T R+P Sbjct: 75 L--HGLVTDFSEQAWELVDAFWPGALTLVAKHQPSLQWDLGDTRG--TVAIRMPLHPVAI 130 Query: 127 LIETYGHPLAIPSANRSGQISITN---VKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + T P+A+ SAN +G S + + +L S+ + +DGG + + S+IV+V Sbjct: 131 ELLTEVGPMAVSSANLTGHPSPEDCDAAQQMLGDSVS----VYLDGGPTPGIVPSSIVDV 186 Query: 184 QCEKKVRILRPGGLEIETLKRAI 206 + V +LR G L E L++ + Sbjct: 187 TGKVPV-LLRQGALSPEELRKVV 208 >gi|221134961|ref|ZP_03561264.1| Sua5/YciO/YrdC/YwlC family protein [Glaciecola sp. HTCC2999] Length = 206 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/190 (24%), Positives = 84/190 (44%), Gaps = 6/190 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E + G + PT++ Y + N +A+ ++ I++ + D+S + Sbjct: 17 IKQAVELIKQGEVVVYPTDSGYSIGCQMDNKSALEQVCRIRELDKTHNFTLMCRDVSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD ++ + K PGP T V +T ++ L KT RVP ++E Sbjct: 77 DYARVDNVAFRILKNNTPGPYTFVFK--ATKEVPKRLQNPKRKTIGIRVPDNPIALAILE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G P+ + G+ + + + + + + LII GG +G T V E +V Sbjct: 135 ELGEPMMSTTLILPGETTAESDPEAIREQLERRVGLIIHGGY--LGEHPTTVIDLSEGEV 192 Query: 190 RILRPGGLEI 199 ILR G +I Sbjct: 193 VILREGSGDI 202 >gi|254526812|ref|ZP_05138864.1| possible translation factor [Prochlorococcus marinus str. MIT 9202] gi|221538236|gb|EEE40689.1| possible translation factor [Prochlorococcus marinus str. MIT 9202] Length = 193 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 62/200 (31%), Positives = 93/200 (46%), Gaps = 24/200 (12%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC----HVSDIS 68 + A + L++GLPI PT+T+ + P +YE KKR PLI H I Sbjct: 7 KSALKTLESGLPIIFPTDTLPAIGC---LPEFSNIIYEFKKRDKDKPLILMGSEHKQLID 63 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIH-PLSTANLKTACFRVPCGF-TKK 126 V + A D ++A +WPG LT+V + ++ H + T+N T R+P + + Sbjct: 64 YVNESAKKD--YENIASKYWPGALTMV---IPASERHTTIITSNDLTLGLRIPNSYMAQS 118 Query: 127 LIETYGHPLAIPSANRS---GQISITNVKHILSS-SICKEIPLIIDGGISKIGLESTIVN 182 LI G PL SAN S G I++ + S I IP G IS G STI+ Sbjct: 119 LIRETG-PLLTSSANLSGFKGSITVEGISQDFPSVKILGPIPW---GKIS--GKASTIIF 172 Query: 183 VQCEKKVRILRPGGLEIETL 202 + R++R G + ++ L Sbjct: 173 WKKSGDWRLIREGEVLVKEL 192 >gi|120405291|ref|YP_955120.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium vanbaalenii PYR-1] gi|119958109|gb|ABM15114.1| translation factor SUA5 [Mycobacterium vanbaalenii PYR-1] Length = 220 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 53/203 (26%), Positives = 89/203 (43%), Gaps = 7/203 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + A L G + +PT+TVYG+ D+ + A+ L K R P+ V Sbjct: 14 DTGIASAISALKGGRLVVMPTDTVYGIGADAFDGEAVAALLAAKGRGRNMPVPVLVGSWH 73 Query: 69 MVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 ++ P S L + FWPG L+LV+ + L AN T R+P + Sbjct: 74 TIQGLVYSVPNSAKELIRAFWPGALSLVVRQAPSLQWD-LGDAN-GTVMLRMPLHPVAIE 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+ G P+A+ SAN SG+ + + + +DGG ++ STIV++ Sbjct: 132 LLREVG-PMAVSSANISGRPPAVTAAQA-REQLGDLVEVYLDGGPAEQQAASTIVDLTGA 189 Query: 187 KKVRILRPGGLEIETLKRAISVE 209 R+LR G + ++ + + V+ Sbjct: 190 HP-RVLREGPVTLDAIADVLGVD 211 >gi|134296280|ref|YP_001120015.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia vietnamiensis G4] gi|134139437|gb|ABO55180.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia vietnamiensis G4] Length = 210 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 74/161 (45%), Gaps = 4/161 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A + + G IA+PT++ Y LA + A+ R+ I+ L V D+S + Sbjct: 17 VKQAADIVSKGGVIAMPTDSSYALACHLDDKDAVERVRRIRGLDEKQHLSLLVRDLSELA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129 A VD L K PGP +L +T ++ LS + KT RVP T L+E Sbjct: 77 NFAMVDNRQYRLIKSVTPGPYVFILQ--ATKEVPRRLSHPSRKTIGLRVPDHAITLALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 + G PL + N + + + K++ L+IDGG Sbjct: 135 SLGQPLLGTTLILPPDDEPLNDPEDIRARLEKQVDLVIDGG 175 >gi|194442465|ref|YP_002042654.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194401128|gb|ACF61350.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 190 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/142 (31%), Positives = 66/142 (46%), Gaps = 10/142 (7%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ A + L+ IA PTE V+G+ D + TA+ RL +K+RP LI + Sbjct: 7 TGSIAAAVDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIAASFE 66 Query: 69 MVKKHASVDPLSLHLAK---LF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-G 122 +K + +D L +A+ +F WPGP+T V +TT T + RV Sbjct: 67 QLKPY--IDDTILTVAQRKAVFDCWPGPVTFVFPAPATTPRW--LTGRFDSLAVRVTNHP 122 Query: 123 FTKKLIETYGHPLAIPSANRSG 144 L YG PL SAN SG Sbjct: 123 LVVALCNAYGKPLVSTSANLSG 144 >gi|198276288|ref|ZP_03208819.1| hypothetical protein BACPLE_02480 [Bacteroides plebeius DSM 17135] gi|198270730|gb|EDY95000.1| hypothetical protein BACPLE_02480 [Bacteroides plebeius DSM 17135] Length = 230 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 55/194 (28%), Positives = 81/194 (41%), Gaps = 21/194 (10%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSDISMV 70 L++ + L+ G I PT+TVY L + I R+ ++K P N L D+S + Sbjct: 42 LQRIVDILNDGGIIIYPTDTVYALGCHALKERPIERICKLKNIDPRKNNLSIICYDLSNI 101 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP--------CG 122 ++A V + L K PGP T +L+ S P N K RVP C Sbjct: 102 SEYARVSNATFKLMKRNLPGPFTFILNADSRL---PKIFRNRKEVGIRVPDNAIIREICQ 158 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIV 181 I T PL I ++ +++ LIIDGG G+E ST++ Sbjct: 159 LLDAPILTTTLPLE-----EGEDIEYITEPELIDEKFGEKVDLIIDGGTG--GIEPSTVI 211 Query: 182 NVQCEKKVRILRPG 195 N C+ I+R G Sbjct: 212 NC-CDDVPEIVRQG 224 >gi|160900844|ref|YP_001566426.1| Sua5/YciO/YrdC/YwlC family protein [Delftia acidovorans SPH-1] gi|160366428|gb|ABX38041.1| Sua5/YciO/YrdC/YwlC family protein [Delftia acidovorans SPH-1] Length = 214 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 72/160 (45%), Gaps = 2/160 (1%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A + L G +AIPT++ Y L + A+ RL I++ + L D+S + Sbjct: 17 IKQAADMLRQGAILAIPTDSSYALVCHLDDRPAVERLRRIRQINDKHHLTLLCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIET 130 +A VD L KL PGP T +L+ S LS + KT RVP T+ L+E Sbjct: 77 SYARVDNRQYRLLKLATPGPYTFILE-ASKEVPKRLSHPSRKTIGLRVPDRKGTQLLLEQ 135 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 G PL + G+ + + E+ I+D G Sbjct: 136 LGEPLIATTLIPPGETEALHDADAILERFPHELDAIVDAG 175 >gi|121595728|ref|YP_987624.1| Sua5/YciO/YrdC/YwlC family protein [Acidovorax sp. JS42] gi|120607808|gb|ABM43548.1| Sua5/YciO/YrdC/YwlC family protein [Acidovorax sp. JS42] Length = 211 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 81/164 (49%), Gaps = 10/164 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLA--VDSRNPT-AIRRLYEIKKRPAMNPLICHVSDIS 68 L++A L +G +A+PT++ Y L +D ++ IRR+ +I + + L+C D+S Sbjct: 17 LKQAATLLSSGGILAVPTDSSYALVCRLDDKDAVDQIRRIRQINDKHHLT-LLCR--DLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKK 126 + +A VD L KL PGP T +LD +T ++ +S KT RVP + Sbjct: 74 ELANYAHVDNRQYRLLKLATPGPYTFILD--ATKEVPRRVSHPQRKTIGLRVPDRKGLQM 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 L+E +G PL + +G+ N + K++ I+D G Sbjct: 132 LLELHGAPLLATTLIPAGESEPLNDPQEIRERFEKQLDGILDAG 175 >gi|29829452|ref|NP_824086.1| hypothetical protein SAV_2910 [Streptomyces avermitilis MA-4680] gi|29606560|dbj|BAC70621.1| hypothetical protein [Streptomyces avermitilis MA-4680] Length = 215 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 58/212 (27%), Positives = 96/212 (45%), Gaps = 31/212 (14%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR------PAM----N 58 + LR+A + G + +PT+TVYG+ D+ + A+ L + K R P + N Sbjct: 14 ATGLREAASAVRRGELVVLPTDTVYGVGADAFSSEAVADLLQSKGRGRNMPTPVLIGSPN 73 Query: 59 PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 L V+D S ++ L FWPG LTLV + T T R Sbjct: 74 TLHGLVTDFS---------EMAWELVDAFWPGALTLVAKHQPSLQWDLGDTRG--TVAVR 122 Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITN---VKHILSSSICKEIPLIIDGGISKI 174 +P +L+ G P+A+ SAN +G + + + +L SI + +DGG + Sbjct: 123 MPLHPVALELLSEVG-PMAVSSANLTGHPAPEDCDAAQEMLGDSIS----VYLDGGPTPG 177 Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAI 206 + S+IV+V + + +LR G L E L++ + Sbjct: 178 IVPSSIVDVSGKIPL-LLREGALSAEELRKVV 208 >gi|22297687|ref|NP_680934.1| hypothetical protein tlr0143 [Thermosynechococcus elongatus BP-1] gi|22293864|dbj|BAC07696.1| tlr0143 [Thermosynechococcus elongatus BP-1] Length = 213 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 49/191 (25%), Positives = 85/191 (44%), Gaps = 6/191 (3%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 A+ + E L G + PT+TVY + D + A++R+ ++K+ P+ S +S + Sbjct: 16 AIAQIVEALKEGAVMLYPTDTVYAIGCDMNHKGAVQRVRQLKQLSNDKPVTFLCSSLSNI 75 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTAN--LKTACFRVPCG-FTKKL 127 ++A V + L + PGP T LL T + P N KT RVP ++ L Sbjct: 76 AQYAYVSDSAYRLMRRLIPGPYTF---LLPATKLVPRLVQNPKRKTTGIRVPDHVVSQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G+P+ SA + L + K + L+ID G S+I+++ E Sbjct: 133 LTALGNPIISTSARLPDDETYYVNTADLFDAFDKRVDLMIDTGEPPTQQMSSILDLTVEP 192 Query: 188 KVRILRPGGLE 198 + + + G E Sbjct: 193 PLLVRKGRGWE 203 >gi|238763697|ref|ZP_04624656.1| Ribosomal modification protein RimN [Yersinia kristensenii ATCC 33638] gi|238697999|gb|EEP90757.1| Ribosomal modification protein RimN [Yersinia kristensenii ATCC 33638] Length = 190 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 59/125 (47%), Gaps = 6/125 (4%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83 IA PTE V+GL D + A+ L +K+RP LI ++ +K + + LS Sbjct: 23 IAYPTEAVFGLGCDPDSEKAVNALLALKQRPWQKGLILIAANYEQLKPYLNDAALSDTQR 82 Query: 84 AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140 +F WPGP+T V+ + + T + + RV ++L YG PL SA Sbjct: 83 EAIFSSWPGPVTWVIP--ARPETPRWLTGSFDSLAVRVSDHPLVQQLCSQYGKPLVSTSA 140 Query: 141 NRSGQ 145 N SGQ Sbjct: 141 NLSGQ 145 >gi|146306866|ref|YP_001187331.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas mendocina ymp] gi|145575067|gb|ABP84599.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas mendocina ymp] Length = 222 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 57/192 (29%), Positives = 88/192 (45%), Gaps = 18/192 (9%) Query: 12 LRKACEFLDAGLPIAIPTETVY--GLAVDSRNPTA-IRRLYEIKKRPAMNPLICHVSDIS 68 +++A E + +G + PT++ Y G A+ +N IRRL ++ + L+C D+S Sbjct: 31 IKQAVEIIRSGGVVVYPTDSSYALGCAIGDKNAVERIRRLRQLDDKHNFT-LVC--RDLS 87 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FT 124 + A VD + L K PGP T +L+ +HP +T RVP Sbjct: 88 QIGLFAKVDTAAFRLLKNHTPGPYTFILNATREVPRMLLHP----KRRTIGLRVPSHPIA 143 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNV 183 L+E G PL S G + + + + ++ LIIDGG GLE ST+VN+ Sbjct: 144 LALLEQLGEPLMSVSLILPGDELPMSDPYEMRQILEHQVELIIDGGFG--GLEASTVVNL 201 Query: 184 QCEKKVRILRPG 195 + ILR G Sbjct: 202 -ADDTPEILRVG 212 >gi|284052762|ref|ZP_06382972.1| hypothetical protein AplaP_14933 [Arthrospira platensis str. Paraca] Length = 203 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 53/185 (28%), Positives = 85/185 (45%), Gaps = 21/185 (11%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL--- 81 I PT+TV LA P +++ K+RP PLI + + + L Sbjct: 20 ITFPTDTVPALAA---RPDKAEAIFQTKQRPPDKPLILMGATAESLWQFVDSQTWELECW 76 Query: 82 -HLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVP-CGFTKKLIETYGHPLAIP 138 +A+ +WPG LTLVL +++ + P ++ + T RVP C ++++ G PLA Sbjct: 77 QQIARQYWPGALTLVLP--ASSAVPPAVNPTDPTTIGLRVPKCEIALEILKRTG-PLATT 133 Query: 139 SANRSGQISITNVKHILSSSICKEIPLII----DGGISKIGLESTIVNVQCEKKVRILRP 194 SAN SGQ + V + I ++ P ++ S + ST+V ILR Sbjct: 134 SANLSGQPPLLTV-----ADIDRQFPEVLSLKESPPESGSAIPSTVVRWTKNGDWEILRS 188 Query: 195 GGLEI 199 GG+E+ Sbjct: 189 GGVEL 193 >gi|182435967|ref|YP_001823686.1| hypothetical protein SGR_2174 [Streptomyces griseus subsp. griseus NBRC 13350] gi|178464483|dbj|BAG19003.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus NBRC 13350] Length = 215 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 56/209 (26%), Positives = 86/209 (41%), Gaps = 25/209 (11%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + LR+A + G + +PT+TVYG+ D+ A+ L + K R P + + Sbjct: 14 ATGLREAASAVRRGELVVLPTDTVYGIGADAFTSEAVADLLDAKGRGRNMPTPVLIGSPN 73 Query: 69 MVKKHASVDPLS---LHLAKLFWPGPLTLV--------LDLLSTTDIHPLSTANLKTACF 117 + H V S L FWPG LTLV DL T T Sbjct: 74 TL--HGLVTDFSEEAWELVDAFWPGALTLVAKHQPSLQWDLGDTR----------GTVAI 121 Query: 118 RVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 R+P + T P+A+ SAN +G S + + + + +DGG + + Sbjct: 122 RMPLHPVAIELLTEVGPMAVSSANLTGHPSPEDCDAA-QGMLGDSVSVYLDGGPTPGIVP 180 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAI 206 S+IV+V V +LR G L E L+ + Sbjct: 181 SSIVDVTGATPV-LLRAGALSAEELRTVV 208 >gi|255535929|ref|YP_003096300.1| Sua5 YciO YrdC YwlC family protein [Flavobacteriaceae bacterium 3519-10] gi|255342125|gb|ACU08238.1| Sua5 YciO YrdC YwlC family protein [Flavobacteriaceae bacterium 3519-10] Length = 190 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 48/187 (25%), Positives = 85/187 (45%), Gaps = 7/187 (3%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 N ++ + L +G I PT+T++G+ D+ N AI +++EIK+R +I V + Sbjct: 7 NTMQNLIDTLISGGTILYPTDTIWGIGCDATNVEAINKIFEIKRREKSKSMIVLVESVKR 66 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCGFTKKLI 128 ++ V L+ + L P+T++ D L+ ++ + P + KKLI Sbjct: 67 LQDIVDVPELAWDIMDLS-EKPVTIIYDNPKGLPAELLAEDGSIGIRLIKDP--YLKKLI 123 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE--STIVNVQCE 186 PL SAN SG S I S I + + D K+ S+++ + + Sbjct: 124 GKLNKPLVSTSANLSGSKSPMKFSDI-SDEIISSVDAVSDENHDKVSEYSGSSVIRMWMD 182 Query: 187 KKVRILR 193 +V+ILR Sbjct: 183 GRVKILR 189 >gi|254423359|ref|ZP_05037077.1| Sua5/YciO/YrdC/YwlC family protein [Synechococcus sp. PCC 7335] gi|196190848|gb|EDX85812.1| Sua5/YciO/YrdC/YwlC family protein [Synechococcus sp. PCC 7335] Length = 219 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 61/198 (30%), Positives = 94/198 (47%), Gaps = 16/198 (8%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 NALR + L G + PT+TVY + D + +AI+R+ ++K+ PL + +S Sbjct: 18 NALR---DDLRQGAIMLYPTDTVYAIGCDLSSKSAIKRVRQLKQLSNDKPLTFLCASLSN 74 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK--TACFRVPCG-FTKK 126 V +A V + + K PGP T LL T P N K T RVP Sbjct: 75 VASYAHVTDPAYKIMKRLIPGPYTF---LLPATKAVPKLVINPKRRTTGIRVPNSPLCLS 131 Query: 127 LIETYGHPLAIPSA----NRSGQISITNV-KHILSSSICKEIPLIIDGGISKIGLE-STI 180 LIE G+P+ SA +RS + I + K +L I K + +++D +++G + STI Sbjct: 132 LIEALGNPIISTSAASIVSRSTEDDIDTLSKVMLFDQIEKLVDVVVDSN-TELGHQVSTI 190 Query: 181 VNVQCEKKVRILRPGGLE 198 V+V + I R G + Sbjct: 191 VDVTDGSPLVIRRGQGWQ 208 >gi|319943942|ref|ZP_08018222.1| Sua5/YciO/YrdC/YwlC family protein [Lautropia mirabilis ATCC 51599] gi|319742703|gb|EFV95110.1| Sua5/YciO/YrdC/YwlC family protein [Lautropia mirabilis ATCC 51599] Length = 206 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 53/196 (27%), Positives = 91/196 (46%), Gaps = 8/196 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +R+ E G +A+PT+ Y LA + TA+ R+ +++ + L D+S + Sbjct: 16 IRQVAEQFQTGALVALPTDASYVLACHLEDRTAVDRMRQLRGIDEKHLLTLLCRDLSELS 75 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKKLIE 129 ++A VD K + PG T +L +T ++ L + KT RVP + L+ Sbjct: 76 QYAQVDNRQFRFLKEWTPGAYTFILP--ATREVPRRLMHPSRKTVGLRVPEAPIVQALLA 133 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST-IVNVQCEKK 188 G PL S G + + + I K I L++DGG + LE+T +++V ++ Sbjct: 134 ELGVPLLCASLILPGDENPLSDPDDIEDRIGKRIDLLVDGGAGQ--LEATSVIDVTGDEP 191 Query: 189 VRILRPGGLEIETLKR 204 V I R G +E + R Sbjct: 192 V-IQRVGLGPVEAMLR 206 >gi|91217342|ref|ZP_01254302.1| putative Sua5/yciO/yrdC family protein [Psychroflexus torquis ATCC 700755] gi|91184450|gb|EAS70833.1| putative Sua5/yciO/yrdC family protein [Psychroflexus torquis ATCC 700755] Length = 205 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 51/190 (26%), Positives = 87/190 (45%), Gaps = 13/190 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTA---IRRLYEIKKRPAMNPLICHVSDIS 68 L++ + L G + PT+TVYGL D N A I R+ IK A +C D+S Sbjct: 17 LKRIVKILKKGGLVIYPTDTVYGLGCDINNTKALEKIARIKGIKLEKANFSFVCQ--DLS 74 Query: 69 MVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + ++ A +D + + K PGP T + L + P KT RVP + Sbjct: 75 NLSEYVAQLDSTTFKILKRNLPGPYTFI---LPGNNKLPSVFKKKKTVGIRVPNNKIVQL 131 Query: 127 LIETYGHPLAIPS-ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 L++ G+P+ S + I T +++ K + ++IDGG + ST+ ++ Sbjct: 132 LVQHLGNPIISTSIRDEDDVIEYTTDPELIAEKWGKLVDVVIDGGFGD-NVASTVFDL-T 189 Query: 186 EKKVRILRPG 195 E + +++R G Sbjct: 190 ETEPKLIRQG 199 >gi|332708684|ref|ZP_08428656.1| translation factor SUA5 [Lyngbya majuscula 3L] gi|332352538|gb|EGJ32106.1| translation factor SUA5 [Lyngbya majuscula 3L] Length = 213 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 50/194 (25%), Positives = 89/194 (45%), Gaps = 10/194 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + K E L+ G + PT+TVY + D +A++R+ +K+ PL S +S + Sbjct: 17 IEKIRESLEDGAVMLYPTDTVYAIGCDVHVKSAVQRVRRLKQLSNDKPLTFLCSSLSNIA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVP-CGFTKKLI 128 K+A V + + K PGP T LL T + P + + N KT RVP + L+ Sbjct: 77 KYARVSDPAYRIMKHLIPGPYTF---LLPATKLVPKLVMSPNRKTTGIRVPDHNVCQALL 133 Query: 129 ETYGHPLAIPSA---NRSGQISITNVKHI-LSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 GHP+ SA N+ G ++ L ++ + +I+D + STI+++ Sbjct: 134 SALGHPIISTSAHLPNQDGDTPTVGLERAKLFDALDGLVDIIVDNDLEPGFQVSTILDLT 193 Query: 185 CEKKVRILRPGGLE 198 + + + + G + Sbjct: 194 SSEPMMVRQGLGWD 207 >gi|256419763|ref|YP_003120416.1| Sua5/YciO/YrdC/YwlC family protein [Chitinophaga pinensis DSM 2588] gi|256034671|gb|ACU58215.1| Sua5/YciO/YrdC/YwlC family protein [Chitinophaga pinensis DSM 2588] Length = 205 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 53/199 (26%), Positives = 89/199 (44%), Gaps = 17/199 (8%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP------LICHVS 65 L+ E L G I PT+TVYG+ D P A+ R+ IK +NP IC+ Sbjct: 15 LKTIVECLKDGGVIIYPTDTVYGMGCDICQPKAVERICRIKH---INPAKAQFSFICY-- 69 Query: 66 DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123 D+S + +A SVD + + K PGP T +L ++ + L T RVP Sbjct: 70 DLSHLSDYAKSVDTPTFRMLKKALPGPYTFILS--ASRAVPRLLKQKKDTVGIRVPDNNI 127 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 ++ +++ G+P+ S + I+ + +++DGGI + ST+V+ Sbjct: 128 SRAIVKELGNPILSTSLPIETYVEEYTDPEIIHEKFGSIVDIVVDGGIGGMTF-STVVDC 186 Query: 184 QCEKKVRILRPGGLEIETL 202 ++ ++R G E L Sbjct: 187 TGDEP-ELIREGAGSWEEL 204 >gi|209525410|ref|ZP_03273950.1| SUA5/yciO/yrdC domain [Arthrospira maxima CS-328] gi|209494090|gb|EDZ94405.1| SUA5/yciO/yrdC domain [Arthrospira maxima CS-328] Length = 203 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 56/187 (29%), Positives = 89/187 (47%), Gaps = 25/187 (13%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHL- 83 I PT+TV LA P +++ K+RP PLI + + + VD L+ L Sbjct: 20 ITFPTDTVPALAA---RPDKAEAIFQTKQRPPDKPLILMGATAESLWQF--VDSLAWELE 74 Query: 84 -----AKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVP-CGFTKKLIETYGHPLA 136 A+ +WPG LTLVL +++ + P ++ + T RVP C ++++ G PLA Sbjct: 75 CWQQIARQYWPGALTLVLP--ASSAVPPAVNPTDPTTIGLRVPKCEIALEILKRTG-PLA 131 Query: 137 IPSANRSGQISITNVKHILSSSICKEIP--LIIDGGISKIG--LESTIVNVQCEKKVRIL 192 SAN SGQ + + ++ I ++ P L + + G + ST+V IL Sbjct: 132 TTSANLSGQPPL-----LTTADIDRQFPEVLTLKDAPPESGSAIPSTVVRWTKNGDWEIL 186 Query: 193 RPGGLEI 199 R GG+E Sbjct: 187 RRGGVEF 193 >gi|330503928|ref|YP_004380797.1| SUA5/YciO/YrdC/YwlC family protein [Pseudomonas mendocina NK-01] gi|328918214|gb|AEB59045.1| SUA5/YciO/YrdC/YwlC family protein [Pseudomonas mendocina NK-01] Length = 208 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 56/192 (29%), Positives = 88/192 (45%), Gaps = 18/192 (9%) Query: 12 LRKACEFLDAGLPIAIPTETVY--GLAVDSRNPTA-IRRLYEIKKRPAMNPLICHVSDIS 68 +++A E + G + PT++ Y G A+ +N IRRL ++ + L+C D+S Sbjct: 17 IKQAVEIIRGGGVVVYPTDSSYALGCAIGDKNAVERIRRLRQLDDKHNFT-LVCR--DLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FT 124 + A VD + L K PGP T +L+ +HP +T RVP Sbjct: 74 QIGLFAKVDTAAFRLLKNHTPGPYTFILNATREVPRMLLHP----KRRTIGIRVPSHPIA 129 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNV 183 L+E G PL S G + + + + + LIIDGG GLE ST+VN+ Sbjct: 130 LALLEQLGEPLMSVSLIMPGDELPMSDPYEMRQILEHHVDLIIDGGFG--GLEASTVVNL 187 Query: 184 QCEKKVRILRPG 195 ++ ++LR G Sbjct: 188 -ADESPQVLRVG 198 >gi|269124173|ref|YP_003306750.1| Sua5/YciO/YrdC/YwlC family protein [Streptobacillus moniliformis DSM 12112] gi|268315499|gb|ACZ01873.1| Sua5/YciO/YrdC/YwlC family protein [Streptobacillus moniliformis DSM 12112] Length = 183 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 86/183 (46%), Gaps = 13/183 (7%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 I PT+TVYGL N A+ ++++IKKR +I VS + K ++ L + Sbjct: 6 ILFPTDTVYGLG-SLPNKKALDKIFDIKKRDRNKKIIALVSKKETINKIIEINDLIDKII 64 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRS 143 F+PGP+TL+ ST I L + R+P ++IE +G L SAN S Sbjct: 65 DKFFPGPITLIAK--STPFIKEL--LGYEDIGVRIPNNKMALEIIEKFGGILMTTSANIS 120 Query: 144 GQISITNVKHILSSSICKEIP--LIIDGGISKIGLESTIVNVQCEKKVRILRPGGLE-IE 200 G+ + I I K + I D +S G+ S+I + E + +LR G + IE Sbjct: 121 GKEAPKKYSEI-DEEILKLVDHKYIDDSNLS--GISSSIFKIDGE-NITLLREGNISLIE 176 Query: 201 TLK 203 +K Sbjct: 177 LIK 179 >gi|239906926|ref|YP_002953667.1| hypothetical protein DMR_22900 [Desulfovibrio magneticus RS-1] gi|239796792|dbj|BAH75781.1| hypothetical protein [Desulfovibrio magneticus RS-1] Length = 214 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 54/193 (27%), Positives = 78/193 (40%), Gaps = 18/193 (9%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI----SMVKKHASVDPLS 80 + PTET + L + N A+ R+ +K RPA PL V ++ ++V + PL Sbjct: 19 VVYPTETYFALGALADNAAALERIVAVKGRPAHKPLPLLVGELAQLAAVVPPGFAAGPLG 78 Query: 81 L---HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-----KKLIETYG 132 LA LFWPGPL+LV+ +K A RV FT L G Sbjct: 79 ADFGELAALFWPGPLSLVVPCREALP------GLVKDADGRVSVRFTPHETAAALCRLAG 132 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192 L SAN SG + + ++ G G ST+ ++ K++ I Sbjct: 133 GALVATSANVSGGPPAATPEALDPEVTAAVDAVLTAGAPPAGGPASTVAGLRGGKRLTIF 192 Query: 193 RPGGLEIETLKRA 205 R G + LK A Sbjct: 193 RRGATPLSALKAA 205 >gi|157412681|ref|YP_001483547.1| putative translation factor (SUA5) [Prochlorococcus marinus str. MIT 9215] gi|157387256|gb|ABV49961.1| Putative translation factor (SUA5) [Prochlorococcus marinus str. MIT 9215] Length = 193 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 62/200 (31%), Positives = 92/200 (46%), Gaps = 24/200 (12%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC----HVSDIS 68 + A + L +GLPI PT+T+ + P +YE KKR PLI H I Sbjct: 7 KSALKTLKSGLPIIFPTDTLPAIGC---LPEFSNIIYEFKKRDKDKPLILMGAEHKQLID 63 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIH-PLSTANLKTACFRVPCGF-TKK 126 V + A D ++A +WPG LT+V + ++ H + T+N T R+P + + Sbjct: 64 YVNESAKKD--YENIASKYWPGALTMV---IPASETHTTIITSNDLTLGLRIPNSYMAQS 118 Query: 127 LIETYGHPLAIPSANRS---GQISITNVKHILSS-SICKEIPLIIDGGISKIGLESTIVN 182 LI G PL SAN S G I++ + S I IP G IS G STI+ Sbjct: 119 LIRETG-PLLTSSANLSGFKGSITVEGISQDFPSVKILGPIPW---GKIS--GKASTIIF 172 Query: 183 VQCEKKVRILRPGGLEIETL 202 + R++R G + ++ L Sbjct: 173 WKKSGDWRLIREGEVLVKEL 192 >gi|146311854|ref|YP_001176928.1| hypothetical protein Ent638_2202 [Enterobacter sp. 638] gi|145318730|gb|ABP60877.1| Sua5/YciO/YrdC/YwlC family protein [Enterobacter sp. 638] Length = 206 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 49/186 (26%), Positives = 79/186 (42%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E + G I PT++ Y L + A+ R+ I+ P + D+S + Sbjct: 17 INQAVEIVRKGGVIVYPTDSGYALGCKIEDKGAMERICRIRHLPDGHNFTLMCRDLSEIS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD ++ L K PG T +L T ++ L KT RVP + L+E Sbjct: 77 TYAYVDNVAFRLIKNNTPGNYTFILK--GTKEVPRRLLQEKRKTIGMRVPSNPIAQMLLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 T G P+ S G + + + K++ LII GG +G + T V E Sbjct: 135 TLGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGGY--LGQQPTTVVDLTEDAP 192 Query: 190 RILRPG 195 ++R G Sbjct: 193 EVIREG 198 >gi|318042639|ref|ZP_07974595.1| hypothetical protein SCB01_13075 [Synechococcus sp. CB0101] Length = 198 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 85/186 (45%), Gaps = 18/186 (9%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK--HASV 76 L AG PT+T+ LA P + L+E+K+RP P+I + + + + Sbjct: 15 LQAGEAALFPTDTLPALAT---KPESAELLWELKQRPRHKPVILMAATGQALLECLGQPI 71 Query: 77 DPLSLHLAKLFWPGPLTLVLDLLSTT--DIHPLSTANLKTACFRVP-CGFTKKLIETYGH 133 +P H+A +WPG LTLVL T ++P + T R+P C +L+ G Sbjct: 72 EPAWQHMADRYWPGALTLVLPARGTWLEQLNPGGS----TLGLRLPACPAALELLTLSG- 126 Query: 134 PLAIPSANRSGQISITNVKHILS--SSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 PLA SANRSG+ + + K + + P+ + G ST++ + ++ Sbjct: 127 PLATTSANRSGEPACLDHKEAAERFPQVAQLAPVPWP---APSGQGSTVIEWLPSGQWQL 183 Query: 192 LRPGGL 197 LR G L Sbjct: 184 LRAGAL 189 >gi|300871115|ref|YP_003785987.1| Sua5/YciO/YrdC/YwlC family protein [Brachyspira pilosicoli 95/1000] gi|300688815|gb|ADK31486.1| Sua5/YciO/YrdC/YwlC family protein [Brachyspira pilosicoli 95/1000] Length = 196 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 89/188 (47%), Gaps = 10/188 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 A+ + + ++ G + PT+TVYG+ D+ N AI R+Y IK+R PL+ + D + Sbjct: 16 AVEEVAKVINNGGVVISPTDTVYGMLADAFNVDAINRIYSIKEREREKPLLILLKDSKFI 75 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129 + + AK+ PG LT ++ L L N T R+P + +KL++ Sbjct: 76 NILCEGNIPDIVKAKI--PGELTFIMPLKEIIKKDFLYLKN--TVALRIPKDDYMEKLLK 131 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 PL PSAN +G I + ++ K + LI++ G + L ST+ + K Sbjct: 132 L-TPPLVAPSANPTGYGVIYDGNKLVELYKDK-VDLIVNCGTIEKKLPSTLYDCINNK-- 187 Query: 190 RILRPGGL 197 +LR G + Sbjct: 188 -VLRQGSV 194 >gi|325924326|ref|ZP_08185870.1| translation factor SUA5 [Xanthomonas gardneri ATCC 19865] gi|325545191|gb|EGD16501.1| translation factor SUA5 [Xanthomonas gardneri ATCC 19865] Length = 191 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 49/183 (26%), Positives = 80/183 (43%), Gaps = 13/183 (7%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A L G IA PTE V+GL D R A+ RL IK+RP +I + + ++ H Sbjct: 14 AVAALTRGGVIAYPTEAVWGLGCDPRQEAAVLRLLAIKRRPVDKGVIVVAASVDIL--HD 71 Query: 75 SVDPLSLHLAK-----LFWPGPLTLVLDLLSTTDIHPLSTANLKTA-CFRVPCG-FTKKL 127 VD +L A+ + WPGP T +L + + P A R+ L Sbjct: 72 WVDFDALEPARKQEVLVSWPGPHTWILPVTAQA---PRWVAGAHDGLAVRISAHPVVAAL 128 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +G PL SAN +G+ + + L ++ I ++DG + + + I + + + Sbjct: 129 CAAWGAPLVSTSANLAGEPPARS-RQSLDPALLVSIDGVVDGEVGALAQPTQIRDARSGQ 187 Query: 188 KVR 190 +R Sbjct: 188 ILR 190 >gi|158521899|ref|YP_001529769.1| Sua5/YciO/YrdC/YwlC family protein [Desulfococcus oleovorans Hxd3] gi|158510725|gb|ABW67692.1| Sua5/YciO/YrdC/YwlC family protein [Desulfococcus oleovorans Hxd3] Length = 202 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 37/158 (23%), Positives = 70/158 (44%), Gaps = 4/158 (2%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 K + L G +A PT+T Y + D ++ ++Y+IK+R P D+ + ++ Sbjct: 17 KVVDSLRQGGIVAFPTDTFYAIGCDIMQKKSVEKIYQIKQRHKSKPFSFICCDLKDISEY 76 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYG 132 A V + K PGP T +L+ + + + KTA RVP ++ G Sbjct: 77 AKVTDYAYRTMKRLLPGPYTFILE--GSRPLPKTMVSKRKTAGIRVPDNAICMAIVRALG 134 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 +P+ +A + T+ ++ K + +++DGG Sbjct: 135 NPVISTTAKLPDKGVFTD-PELIHDHFGKLLDIVVDGG 171 >gi|170722951|ref|YP_001750639.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas putida W619] gi|169760954|gb|ACA74270.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas putida W619] Length = 221 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 81/186 (43%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +R+A E + G + PT++ Y L + AI R+ ++ + D+S + Sbjct: 29 IRQAVEIIRKGGVVVYPTDSAYALGCQIGDKAAIERVRRLRGLDKTHNFTLMCCDMSQLG 88 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKKLIE 129 +A VD + L K PGP T +L+ T ++ L +T RVP G T L+ Sbjct: 89 LYAKVDTGTFRLLKAHVPGPYTFILN--GTREVPRLLLHEKRRTIGLRVPDHGITLALLA 146 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL S G + + + + L+IDGG + STI+++ ++ Sbjct: 147 ELGEPLMSVSLILPGDSEPMTDPYEIRERLEHHVDLVIDGGFGDLK-ASTIIDLSGDEP- 204 Query: 190 RILRPG 195 ++R G Sbjct: 205 EVIREG 210 >gi|86742399|ref|YP_482799.1| translation factor SUA5 [Frankia sp. CcI3] gi|86569261|gb|ABD13070.1| translation factor SUA5 [Frankia sp. CcI3] Length = 216 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 56/198 (28%), Positives = 83/198 (41%), Gaps = 9/198 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + L A + G + +PT+T+YGL D+ + A+ L K R P+ V Sbjct: 13 ARGLDAAVSTVARGGLVVLPTDTLYGLGADAFDRDAVASLLAAKGRGRNMPVPVLVGSWR 72 Query: 69 MVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 + + P L FWPG LTLV T + + T R+P Sbjct: 73 TLDGLIERMTPQVRELITAFWPGGLTLVAR--HTPSLRWDLGESRGTVAVRMP--LHPVA 128 Query: 128 IETYGH--PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 IE G P+A+ SAN SGQ T + L + + +DGG + STIV+ Sbjct: 129 IELLGRTGPMAVSSANISGQPPATTIDEAL-HQLGGAADVYLDGGPCPAAVPSTIVDCTG 187 Query: 186 EKKVRILRPGGLEIETLK 203 E V +LR G + + L+ Sbjct: 188 EVPV-VLRSGAIGLTALR 204 >gi|62181908|ref|YP_218325.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62129541|gb|AAX67244.1| putative translation factor [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322716394|gb|EFZ07965.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 200 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 72/169 (42%), Gaps = 7/169 (4%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 Q+ + + ++ A + L+ IA PTE V+G+ D + TA+ RL +K+RP LI Sbjct: 10 QVNNNLPTGSIAAAVDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLI 69 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 + +K + L+ K WPGP+T V +TT T + R Sbjct: 70 LIAASFEQLKPYIDDSILTAAQRKAVFDCWPGPVTFVFPAPATT--PRWLTGRFDSLAVR 127 Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLI 166 V L YG PL SAN SG V+ + + + P++ Sbjct: 128 VTNHPLVVALCNAYGKPLVSTSANLSGLPPCRTVEEV-RAQFGDDFPVV 175 >gi|90581183|ref|ZP_01236982.1| Putative Sua5/YciO/YrdC family protein [Vibrio angustum S14] gi|90437704|gb|EAS62896.1| Putative Sua5/YciO/YrdC family protein [Vibrio angustum S14] Length = 185 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 58/131 (44%), Gaps = 6/131 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L G I PTE V+G+ D N A+ +L IK+RP LI ++ + + Sbjct: 11 LKQGEVIGYPTEAVFGVGCDPDNQEAVEKLLAIKQRPVEKGLILIAANYEQLLSYIDESL 70 Query: 79 LSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134 L+ + WPGP+T V+ + ++ T T RV ++L +G P Sbjct: 71 LTEQQKQTVMATWPGPVTWVMP--TKPNVPSFLTGQFTTIAVRVSDHPLVQRLCLEFGKP 128 Query: 135 LAIPSANRSGQ 145 + SAN +GQ Sbjct: 129 ITSTSANLTGQ 139 >gi|220933377|ref|YP_002512276.1| putative translation factor, SUA5/YciO/YrdC-like protein [Thioalkalivibrio sp. HL-EbGR7] gi|219994687|gb|ACL71289.1| putative translation factor, SUA5/YciO/YrdC-like protein [Thioalkalivibrio sp. HL-EbGR7] Length = 190 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 69/161 (42%), Gaps = 20/161 (12%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + AG IA PTE V+GL D RN A+ RL IK+R LI ++ + ++ Sbjct: 13 VHRAGALIRAGGVIAYPTEAVFGLGCDPRNEEAVARLLAIKQREVSKGLILIAAEAAQLE 72 Query: 72 KH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130 + +DP + A WPGP+T + + D T + T RV Sbjct: 73 PYLLPLDPQTTARAHAAWPGPVTWLWPV--RPDTPRWLTGDHDTLAVRV----------- 119 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171 HPLA +G I T S+++ E P D + Sbjct: 120 TDHPLAAALCREAGAIVST------SANLAGEEPARTDAAV 154 >gi|258648509|ref|ZP_05735978.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella tannerae ATCC 51259] gi|260851274|gb|EEX71143.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella tannerae ATCC 51259] Length = 211 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 68/135 (50%), Gaps = 3/135 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +R+A E L+ G I PT+T++G+ D+ NP A++R+Y+IK+R LI V + ++ Sbjct: 29 IRQAVEVLNRGGVILYPTDTIWGIGCDATNPEAVQRVYDIKRRIDSKALITLVDSEAKLQ 88 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 + P + + P T+V D + ++ P A + R+ F+++L Sbjct: 89 FYVRDVPNAAWDIIDYATRPTTIVYD--TVRNLAPNLLAEDGSVGIRITQEPFSRELCAR 146 Query: 131 YGHPLAIPSANRSGQ 145 + + SAN SG+ Sbjct: 147 FRRAIVSTSANVSGE 161 >gi|239816993|ref|YP_002945903.1| Sua5/YciO/YrdC/YwlC family protein [Variovorax paradoxus S110] gi|239803570|gb|ACS20637.1| Sua5/YciO/YrdC/YwlC family protein [Variovorax paradoxus S110] Length = 211 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 73/161 (45%), Gaps = 4/161 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++A L G +A+PT++ Y LA + A+ +L I++ + L D+S + Sbjct: 17 LKQAAALLQRGEIVAVPTDSSYALACHLDDKDAVDQLRRIRQVDEKHHLTLLCRDLSELA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKKLIE 129 +A VD L K PGP T +L+ +T ++ +S KT RVP +L+ Sbjct: 77 NYARVDNKQYRLLKAATPGPYTFLLE--ATKEVPRRVSHPQRKTIGLRVPDHKVLLELLM 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 +G PL + G+ N + K+I +ID G Sbjct: 135 LHGAPLLATTLIAPGETEALNDAQTIRERFEKQIGAVIDAG 175 >gi|168234459|ref|ZP_02659517.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194469757|ref|ZP_03075741.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194456121|gb|EDX44960.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205331622|gb|EDZ18386.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 190 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 71/166 (42%), Gaps = 15/166 (9%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ A + L+ IA PTE V+G+ D + TA+ RL +K+RP LI + Sbjct: 7 TGSIAAAVDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIAASFE 66 Query: 69 MVKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125 +K + L+ K WPGP+T V +TT T + RV TK Sbjct: 67 QLKPYIDDSILTAAQRKAVFDCWPGPVTFVFPAPATTPRW--LTGRFDSLAVRV----TK 120 Query: 126 -----KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLI 166 L YG PL SAN SG V+ + + + P++ Sbjct: 121 HPLVVALCNAYGKPLVSTSANLSGLPPCRTVEEV-RAQFGDDFPVV 165 >gi|305664811|ref|YP_003861098.1| hypothetical protein FB2170_00860 [Maribacter sp. HTCC2170] gi|88707933|gb|EAR00172.1| hypothetical protein FB2170_00860 [Maribacter sp. HTCC2170] Length = 189 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 49/191 (25%), Positives = 90/191 (47%), Gaps = 6/191 (3%) Query: 6 ITDSNALRKAC-EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 ++D A +C + L G I PT+TV+G+ D+ A++++Y +K+R LI V Sbjct: 1 MSDFTAEINSCIKVLSEGGLILYPTDTVWGIGCDATKEEAVQKVYALKQREDSKALISLV 60 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 ++ +M+++H P + P T++ D + + P A T RV F Sbjct: 61 ANDAMLERHVEQVPEVAYEILDLATKPTTIIYD--NPKGLAPNVIAQDNTMAIRVASDKF 118 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVN 182 + LI + P+ SAN +GQ + + I S I K + I++ K S+I+ Sbjct: 119 CQYLINKFRKPIISTSANVTGQSTPKSFSEI-SEPILKGVDYIVNLEHDKKNESASSIIK 177 Query: 183 VQCEKKVRILR 193 + + V+++R Sbjct: 178 LSNDGTVKVIR 188 >gi|313885913|ref|ZP_07819653.1| Sua5/YciO/YrdC/YwlC family protein [Porphyromonas asaccharolytica PR426713P-I] gi|312924668|gb|EFR35437.1| Sua5/YciO/YrdC/YwlC family protein [Porphyromonas asaccharolytica PR426713P-I] Length = 195 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 51/189 (26%), Positives = 88/189 (46%), Gaps = 10/189 (5%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV-SDIS 68 +A+R+A + L G I PT+T++GL D+ N A+ RL +K RP P++ V SD+ Sbjct: 12 SAVREAVDVLQRGGIILYPTDTIWGLGCDATNEEAVDRLSALKGRPTGKPMLMLVDSDVR 71 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +V ++ L + PLT++ ++ P A+ + R+ +++ Sbjct: 72 IQSYVRTVPSMAFQLIDVAV-RPLTIIYP--EGRNVAPQLLADDGSIGIRIASDTLCQEI 128 Query: 128 IETYGHPLAIPSANRSGQISITNVKHI---LSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 PL SAN +G S N I L + +PL D I G+ S I+ + Sbjct: 129 CRMLRRPLVSTSANLAGTSSPHNYSEIDPALIKMVDYVVPLRQDEHID--GMPSDIIKLG 186 Query: 185 CEKKVRILR 193 +VR++R Sbjct: 187 INNEVRVIR 195 >gi|218654186|emb|CAN86632.2| C. elegans protein Y48C3A.18b, confirmed by transcript evidence [Caenorhabditis elegans] Length = 143 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 50/144 (34%), Positives = 71/144 (49%), Gaps = 11/144 (7%) Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLST--TDIHPLSTANLKTACFRVP-CGFTKKLI 128 K S +S LA PGP+TL+ + L + +P + AC RVP C + Sbjct: 2 KLVSRQTISDELANCLLPGPVTLMFERLPCLPAEFNP---GVVNVAC-RVPDCPIVSTIC 57 Query: 129 ETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGG-ISKIGLESTIVNVQCE 186 + G PLA SAN SG ++ T++ H + I LI+D G I G STIV++ E Sbjct: 58 KKLGQPLAQTSANVSGSSLNPTSIDHF--RDLHPNIDLILDAGSIISSGEGSTIVDLTVE 115 Query: 187 KKVRILRPGGLEIETLKRAISVEL 210 RI+R G E ET+++ S L Sbjct: 116 SGFRIVRSGCAEKETMQKLKSFGL 139 >gi|200386898|ref|ZP_03213510.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199603996|gb|EDZ02541.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 190 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 72/168 (42%), Gaps = 9/168 (5%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ A + L+ IA PTE V+G+ D + TA+ RL +K+RP LI + Sbjct: 7 TGSIAAAVDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIAASFE 66 Query: 69 MVKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 +K + L+ K WPGP+T V +TT T + RV Sbjct: 67 QLKPYIDDSILTAAQRKAVFDCWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTNHPLV 124 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLI--IDGG 170 L YG PL SAN SG V+ + + + P++ + GG Sbjct: 125 VALCNAYGKPLVSTSANLSGLPPCRTVEEV-RAQFGDDFPVVEGVTGG 171 >gi|241667154|ref|ZP_04754732.1| SUA5/YciO/YrdC family protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254875707|ref|ZP_05248417.1| Sua5/YciO/YrdC/YwlC family protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254841728|gb|EET20142.1| Sua5/YciO/YrdC/YwlC family protein [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 204 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 51/191 (26%), Positives = 89/191 (46%), Gaps = 6/191 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++ LD+ +A+PT++ Y LA ++ AI ++ +I++ + D+S + Sbjct: 17 LKEIANILDSDGVLAVPTDSGYALACRMKSKKAIDKIIKIRELDGKHNFTLSCKDLSEIS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCGFTKKLIET 130 ++A VD + + K + PGP T +L+ +T + L T + T RV + + I Sbjct: 77 EYAKVDNSAYRILKRYTPGPFTFILN--ATKKVSSLLVTKSKNTVGIRVSEHYALQAISA 134 Query: 131 -YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL I S GQ + ++ + I ++I+ G EST V E Sbjct: 135 EIGEPLVIGSFILPGQDHVVTDCSVIDDEVMNYIDVVIES--DYCGYESTTVVEMLELPY 192 Query: 190 RILRPGGLEIE 200 +ILR G EI+ Sbjct: 193 QILRQGAGEID 203 >gi|78066874|ref|YP_369643.1| Sua5/YciO/YrdC/YwlC [Burkholderia sp. 383] gi|77967619|gb|ABB08999.1| Sua5/YciO/YrdC/YwlC [Burkholderia sp. 383] Length = 210 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 72/161 (44%), Gaps = 4/161 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E + G IA+PT++ Y LA + A+ R+ I+ L V D+S + Sbjct: 17 IKQAVEIVSKGGVIAMPTDSSYALACHLDDKDAVERVRRIRGLDEKQHLSLLVRDLSELA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129 A VD K PGP +L +T ++ LS + KT RVP T L+E Sbjct: 77 NFAMVDNRQYRQIKSVTPGPYVFILQ--ATKEVPRRLSHPSRKTIGLRVPDHAITLALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 + G PL + N + + K++ L+IDGG Sbjct: 135 SLGQPLLGTTLILPPDDEPLNEPEEIRERLEKQVDLVIDGG 175 >gi|331007378|ref|ZP_08330567.1| hypothetical protein IMCC1989_1396 [gamma proteobacterium IMCC1989] gi|330418812|gb|EGG93289.1| hypothetical protein IMCC1989_1396 [gamma proteobacterium IMCC1989] Length = 203 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 49/199 (24%), Positives = 85/199 (42%), Gaps = 8/199 (4%) Query: 2 QIMSITDSNA----LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 Q+ SI N + +A E + G +A PT++ Y L + A+ R+ I++ Sbjct: 3 QLFSIHPENPQARFITRAVEIIRKGGLVAYPTDSAYALGCHIGDKFALDRIRGIRQLDKH 62 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 + D+S + +A V+ + + K F PGP T +L+ S T L KT Sbjct: 63 HNFTLVCRDLSEIATYAKVNNQAYRMIKNFTPGPFTFILEATSETP-RRLKHPKRKTIGL 121 Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 RVP L+E P+ + + + + ++ ++ L+IDGG G+ Sbjct: 122 RVPSNPVALALLEELNEPMMTSTLILPNESQPLTDPYDIRETLEHQLELVIDGGFC--GM 179 Query: 177 ESTIVNVQCEKKVRILRPG 195 E+T V + I+R G Sbjct: 180 EATTVVDMTGDEPVIVRQG 198 >gi|238754208|ref|ZP_04615566.1| Ribosomal modification protein RimN [Yersinia ruckeri ATCC 29473] gi|238707704|gb|EEQ00064.1| Ribosomal modification protein RimN [Yersinia ruckeri ATCC 29473] Length = 189 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 40/124 (32%), Positives = 59/124 (47%), Gaps = 6/124 (4%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL-SLHL 83 IA PTE V+GL D + A+ L +K+RP LI ++ + + + + L Sbjct: 22 IAYPTEAVFGLGCDPDSEKAVNDLLALKQRPWQKGLILIAANYEQLLPYINDEKLDDTQR 81 Query: 84 AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140 A +F WPGP+T V+ + TT T + + RV ++L YG PL SA Sbjct: 82 ATIFSSWPGPVTWVIPVRKTTPR--WLTGHFNSLAVRVSDHPLVQQLCTYYGKPLVSTSA 139 Query: 141 NRSG 144 N SG Sbjct: 140 NLSG 143 >gi|224098292|ref|XP_002195404.1| PREDICTED: hypothetical protein [Taeniopygia guttata] Length = 865 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 47/188 (25%), Positives = 88/188 (46%), Gaps = 15/188 (7%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++++++ + L G IPT+TVY L P A+ + + K++ P+ +S + Sbjct: 606 ASSVKRIADILRNGGTCGIPTDTVYVLVAACSRPDAVEKAHRSKRQAQDRPMSLWISSLK 665 Query: 69 MVK--KHASVDPLSLHLAKLFWPGPLTLVL------DLLSTTDIHPLSTANLKTACFRVP 120 ++ KH PL + WP P++LV+ D L D ++ R+P Sbjct: 666 QLEPAKHL-FTPLLWDFMEAAWPSPISLVIPRGEWVDFLGMKD-SAKYVGTPQSVAIRIP 723 Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 C T LI+ G P+ + SAN +G+ T+ + + + ++ ++ GG S + ST Sbjct: 724 DCSVTTHLIDLVG-PIVVTSANPTGEADTTHHNQVY-AKLGDKVDAVLCGGPSPENIAST 781 Query: 180 IVNVQCEK 187 +V+ C K Sbjct: 782 VVD--CTK 787 >gi|193205175|ref|NP_001122661.1| hypothetical protein Y48C3A.18 [Caenorhabditis elegans] Length = 171 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 50/144 (34%), Positives = 71/144 (49%), Gaps = 11/144 (7%) Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLST--TDIHPLSTANLKTACFRVP-CGFTKKLI 128 K S +S LA PGP+TL+ + L + +P + AC RVP C + Sbjct: 2 KLVSRQTISDELANCLLPGPVTLMFERLPCLPAEFNP---GVVNVAC-RVPDCPIVSTIC 57 Query: 129 ETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGG-ISKIGLESTIVNVQCE 186 + G PLA SAN SG ++ T++ H + I LI+D G I G STIV++ E Sbjct: 58 KKLGQPLAQTSANVSGSSLNPTSIDHF--RDLHPNIDLILDAGSIISSGEGSTIVDLTVE 115 Query: 187 KKVRILRPGGLEIETLKRAISVEL 210 RI+R G E ET+++ S L Sbjct: 116 SGFRIVRSGCAEKETMQKLKSFGL 139 >gi|291619138|ref|YP_003521880.1| YrdC [Pantoea ananatis LMG 20103] gi|291154168|gb|ADD78752.1| YrdC [Pantoea ananatis LMG 20103] Length = 190 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 64/150 (42%), Gaps = 6/150 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S +L+ L IA PTE V+GL D N +A+ L +K+RP LI +D Sbjct: 7 SGSLQDCVNHLKQHAVIAYPTEAVFGLGCDPDNESAVMALLALKRRPVEKGLILIAADYG 66 Query: 69 MVKKHASVDPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 + + S L+ + ++F WPGP+T V+ T T + RV Sbjct: 67 QLMPYVSDHVLTAMQRERMFACWPGPVTFVVPAAPHTPR--WLTGQFDSLAIRVSDHPDV 124 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHI 154 + L + PL SAN SGQ V + Sbjct: 125 QALCRAFDKPLVSTSANLSGQPPCRTVDEV 154 >gi|88705375|ref|ZP_01103086.1| Sua5/YciO/YrdC/YwlC family protein [Congregibacter litoralis KT71] gi|88700465|gb|EAQ97573.1| Sua5/YciO/YrdC/YwlC family protein [Congregibacter litoralis KT71] Length = 179 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 61/123 (49%), Gaps = 6/123 (4%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 IA PTE V+GL+ D + A++RL ++K+RPA LI +D + + P SL Sbjct: 14 IACPTEAVWGLSCDPFSEVAVQRLLDLKQRPAHKGLILVAADEAQLDFLLEGLPESLRQK 73 Query: 85 -KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF--TKKLIETYGHPLAIPSAN 141 ++ WPGP T ++ + PL ++ RV G + L +G PL SAN Sbjct: 74 IRVSWPGPNTWLVP--HRGRVSPLVHGRFESVAVRV-SGHPDVRALCRVHGGPLVSSSAN 130 Query: 142 RSG 144 +G Sbjct: 131 VAG 133 >gi|254247809|ref|ZP_04941130.1| conserved hypothetical protein [Burkholderia cenocepacia PC184] gi|124872585|gb|EAY64301.1| conserved hypothetical protein [Burkholderia cenocepacia PC184] Length = 210 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 73/161 (45%), Gaps = 4/161 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E + G IA+PT++ Y LA + A+ R+ I+ L V D+S + Sbjct: 17 IKQAVEIVSKGGVIAMPTDSSYALACHLDDKDAVERVRRIRGLDEKQHLSLLVRDLSELA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129 A VD K PGP +L +T ++ LS + KT RVP T L+E Sbjct: 77 NFAMVDNRQYRQIKSVTPGPYVFILQ--ATKEVPRRLSHPSRKTIGLRVPDHAITLALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 + G PL + N + + + K++ L+IDGG Sbjct: 135 SLGQPLLGTTLILPPDDEPLNDPEEIRTRLEKQVDLVIDGG 175 >gi|107028721|ref|YP_625816.1| Sua5/YciO/YrdC/YwlC [Burkholderia cenocepacia AU 1054] gi|116690120|ref|YP_835743.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia cenocepacia HI2424] gi|170733453|ref|YP_001765400.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia cenocepacia MC0-3] gi|206560533|ref|YP_002231298.1| hypothetical protein BCAL2171 [Burkholderia cenocepacia J2315] gi|105897885|gb|ABF80843.1| Sua5/YciO/YrdC/YwlC [Burkholderia cenocepacia AU 1054] gi|116648209|gb|ABK08850.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia cenocepacia HI2424] gi|169816695|gb|ACA91278.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia cenocepacia MC0-3] gi|198036575|emb|CAR52472.1| conserved hypothetical protein [Burkholderia cenocepacia J2315] Length = 210 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 73/161 (45%), Gaps = 4/161 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E + G IA+PT++ Y LA + A+ R+ I+ L V D+S + Sbjct: 17 IKQAVEIVSKGGVIAMPTDSSYALACHLDDKDAVERVRRIRGLDEKQHLSLLVRDLSELA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129 A VD K PGP +L +T ++ LS + KT RVP T L+E Sbjct: 77 NFAMVDNRQYRQIKSVTPGPYVFILQ--ATKEVPRRLSHPSRKTIGLRVPDHAITLALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 + G PL + N + + + K++ L+IDGG Sbjct: 135 SLGQPLLGTTLILPPDDEPLNDPEEIRTRLEKQVDLVIDGG 175 >gi|298373254|ref|ZP_06983243.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroidetes oral taxon 274 str. F0058] gi|298274306|gb|EFI15858.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroidetes oral taxon 274 str. F0058] Length = 192 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 5/147 (3%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + L++A L AG I PT+TV+G+ D+ N ++ R++EIK+RP+ +I + D+ Sbjct: 9 DELKEAVRVLRAGGVILYPTDTVWGIGCDATNHKSVERVFEIKRRPSSKSMIVLLDDMGK 68 Query: 70 VKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 + + P ++ L K + PLT++ ++ P + R+ ++ L Sbjct: 69 IPNYVEDMPDVAWDLVK-YATEPLTVIYQ--KGKNLAPNVVGEDGSIAIRITHEEVSRSL 125 Query: 128 IETYGHPLAIPSANRSGQISITNVKHI 154 PL SAN SGQ S I Sbjct: 126 CRMLCRPLVSTSANMSGQPSAATFGQI 152 >gi|161524350|ref|YP_001579362.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia multivorans ATCC 17616] gi|189350896|ref|YP_001946524.1| putative translation factor [Burkholderia multivorans ATCC 17616] gi|221198404|ref|ZP_03571450.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia multivorans CGD2M] gi|221208919|ref|ZP_03581916.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia multivorans CGD2] gi|221214750|ref|ZP_03587719.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia multivorans CGD1] gi|160341779|gb|ABX14865.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia multivorans ATCC 17616] gi|189334918|dbj|BAG43988.1| putative translation factor [Burkholderia multivorans ATCC 17616] gi|221165289|gb|EED97766.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia multivorans CGD1] gi|221171202|gb|EEE03652.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia multivorans CGD2] gi|221182336|gb|EEE14737.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia multivorans CGD2M] Length = 210 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 4/161 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E ++ G +A+PT++ Y LA + A+ R+ I+ L V D+S + Sbjct: 17 IKQAVEIVNKGGVVAMPTDSSYALACHLDDKDAVERVRRIRGLDEKQHLSLLVRDLSELA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129 A VD K PGP +L +T ++ LS + KT RVP T L+E Sbjct: 77 NFAMVDNRQYRQIKSVTPGPYVFILQ--ATKEVPRRLSHPSRKTIGLRVPDHAITLALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 + G PL + N + + + K++ L+IDGG Sbjct: 135 SLGQPLLGTTLILPPDDEPLNDPEDIRARLEKQVDLVIDGG 175 >gi|114319880|ref|YP_741563.1| translation factor SUA5 [Alkalilimnicola ehrlichii MLHE-1] gi|114226274|gb|ABI56073.1| translation factor SUA5 [Alkalilimnicola ehrlichii MLHE-1] Length = 207 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 54/187 (28%), Positives = 87/187 (46%), Gaps = 8/187 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++ E + AG IA PT++ Y L A+ R+ +I++ + D+S + Sbjct: 17 VKRTVEIIRAGGVIAYPTDSSYALGCGIGEKQAVDRIRQIRRLREDHNFTLACRDLSDIG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 +A V+ + L K PGP T +L S L KT RVP T+ ++E Sbjct: 77 TYARVENYAYRLLKSHTPGPYTFILKATSKVP-RLLQHPKKKTIGIRVPDHPTTQAILEE 135 Query: 131 YGHPLAIPS-ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKK 188 G PL S + IT+ I +++ ++ +IDGG GLE ST+V++ E Sbjct: 136 LGEPLMTVSLIMPDDDMPITDPVDI-RAALEHQVDAVIDGGPG--GLEPSTVVDLSGEAP 192 Query: 189 VRILRPG 195 R+LR G Sbjct: 193 -RVLREG 198 >gi|330836515|ref|YP_004411156.1| SUA5/yciO/yrdC domain-containing protein [Spirochaeta coccoides DSM 17374] gi|329748418|gb|AEC01774.1| SUA5/yciO/yrdC domain protein [Spirochaeta coccoides DSM 17374] Length = 194 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 57/208 (27%), Positives = 92/208 (44%), Gaps = 26/208 (12%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 ++S D + + L A + +P +T+YGL+ +R P L EIK R A + Sbjct: 6 VISRQDERSAEVVVQCLLADHAVILPCDTIYGLS--ARVPQGENLLREIKGRSADKSFLV 63 Query: 63 HVSDISMVKKHASVDPLSLHL---AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 ++ + M + + HL + WP PLT +++ T + T RV Sbjct: 64 -LATLEMARSLSGG-----HLPPGLEEIWPAPLTAIVN-----------TQDGGTIGIRV 106 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--L 176 P F +K++E G P+ S N SG+ ++ + I S E + G S +G + Sbjct: 107 PDDVFIQKILEMVGTPIYSTSVNVSGEKAMLSFDEIFSHYGMDERIALFVIGSSSVGTTM 166 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKR 204 STIV+ + RILR G + TL R Sbjct: 167 ASTIVDCTV-RPYRILRQGAYDATTLIR 193 >gi|282861119|ref|ZP_06270184.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces sp. ACTE] gi|282563777|gb|EFB69314.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces sp. ACTE] Length = 215 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 57/212 (26%), Positives = 89/212 (41%), Gaps = 31/212 (14%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + LR+A + G + +PT+TVYG+ D+ + I L K R P + + Sbjct: 14 TTGLREAASAVRRGELVVLPTDTVYGIGADAFSSEGIADLLAAKGRGRNMPTPVLIGSPN 73 Query: 69 MVKKHASVDPLS---LHLAKLFWPGPLTLV--------LDLLSTTDIHPLSTANLKTACF 117 + H V S L FWPG LTLV DL T T Sbjct: 74 TL--HGLVTDFSEEAWELVDAFWPGALTLVARHQPSLQWDLGDTR----------GTVAV 121 Query: 118 RVPCGFTKKLIETYGHPLAIPSANRSGQIS---ITNVKHILSSSICKEIPLIIDGGISKI 174 R+P + T P+ + SAN +G S + +L S+ + +DGG + Sbjct: 122 RMPLHPVAIELLTEVGPMGVSSANLTGHPSPETCDAAQDMLGDSVS----VYLDGGPTPG 177 Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAI 206 + S+IV+V + V +LR G L +E L++ + Sbjct: 178 IVPSSIVDVTGKVPV-LLRAGALSVEELRKVV 208 >gi|225012714|ref|ZP_03703149.1| Sua5/YciO/YrdC/YwlC family protein [Flavobacteria bacterium MS024-2A] gi|225003247|gb|EEG41222.1| Sua5/YciO/YrdC/YwlC family protein [Flavobacteria bacterium MS024-2A] Length = 182 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 18/134 (13%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L+ I PT+TV+G+ D+ P + ++Y+IK+R LI V DI M+K++ P Sbjct: 9 LEKKQTILYPTDTVWGIGGDATAPEVVEKIYKIKQRADHKALIVLVKDIEMLKEYVQEIP 68 Query: 79 -LSLHLAK------LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIET 130 ++ + L +P + L +LL + R+P F ++L+ + Sbjct: 69 EVAFSFLEEERPTTLVYPQGINLADNLLGQDG----------SVGIRIPKHSFCQQLLTS 118 Query: 131 YGHPLAIPSANRSG 144 +G P+ SAN SG Sbjct: 119 FGKPIISTSANISG 132 >gi|269128126|ref|YP_003301496.1| Sua5/YciO/YrdC/YwlC family protein [Thermomonospora curvata DSM 43183] gi|268313084|gb|ACY99458.1| Sua5/YciO/YrdC/YwlC family protein [Thermomonospora curvata DSM 43183] Length = 258 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 59/206 (28%), Positives = 94/206 (45%), Gaps = 16/206 (7%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 I +PT+TVYG+ D+ P+A++ L + K P V S+ A V+ L + Sbjct: 33 IVLPTDTVYGIGCDAFTPSAVQALLDAKGHGRDRPPAVLVG--SVRAATALVEDLGTYGQ 90 Query: 85 KL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSA 140 L FWPG LTLV L A T R+P +L++ G PLA+ +A Sbjct: 91 DLIDEFWPGALTLVCRANRNLSWD-LGDAK-GTVAVRMPLHDLALELLKETG-PLAVSAA 147 Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200 R G + S + + +DGG S ST++++ R+LR G + ++ Sbjct: 148 ARKGGPPARSAAQA-ESVFGDAVSVCLDGGPSGERQPSTLLDLTGPIP-RLLRAGAVSVD 205 Query: 201 TLKRAIS----VELEYCVDETSTPQS 222 + RAI+ E + +ET+ PQ+ Sbjct: 206 RI-RAITGVVMTEEDESAEETAEPQA 230 >gi|168468041|ref|ZP_02701878.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168823240|ref|ZP_02835240.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|195628882|gb|EDX48292.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|205340492|gb|EDZ27256.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320087848|emb|CBY97611.1| putative ribosome maturation factor rimN [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 190 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 64/150 (42%), Gaps = 6/150 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ A + L+ IA PTE V+G+ D + TA+ RL +K+RP LI + Sbjct: 7 TGSIAAAVDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIAASFE 66 Query: 69 MVKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124 +K + L+ K WPGP+T V +TT T + RV Sbjct: 67 QLKPYIDDSILTAAQRKAVFDCWPGPVTFVFPAPATTPRW--LTGRFDSLAVRVTNHPLV 124 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHI 154 L YG PL SAN SG V+ + Sbjct: 125 VALCNAYGKPLVSTSANLSGLPPCRTVEEV 154 >gi|161616428|ref|YP_001590393.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167554199|ref|ZP_02347940.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168245229|ref|ZP_02670161.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168264717|ref|ZP_02686690.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|194449529|ref|YP_002047427.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197250333|ref|YP_002148323.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|198243534|ref|YP_002217366.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|224585197|ref|YP_002638996.1| ribosome maturation factor [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238913883|ref|ZP_04657720.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|212288230|sp|A9N8A7|RIMN_SALPB RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|212288266|sp|Q57J68|RIMN_SALCH RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|161365792|gb|ABX69560.1| hypothetical protein SPAB_04243 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194407833|gb|ACF68052.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197214036|gb|ACH51433.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197938050|gb|ACH75383.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205321544|gb|EDZ09383.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205336011|gb|EDZ22775.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205346875|gb|EDZ33506.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|224469725|gb|ACN47555.1| hypothetical protein SPC_3471 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322615057|gb|EFY11981.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617344|gb|EFY14245.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625566|gb|EFY22391.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626408|gb|EFY23217.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632080|gb|EFY28833.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635041|gb|EFY31764.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322643258|gb|EFY39825.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646658|gb|EFY43165.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650004|gb|EFY46423.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322652721|gb|EFY49061.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659522|gb|EFY55766.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665536|gb|EFY61723.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322670430|gb|EFY66569.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670503|gb|EFY66637.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675079|gb|EFY71162.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681616|gb|EFY77645.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685960|gb|EFY81949.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195830|gb|EFZ81003.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196414|gb|EFZ81565.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202699|gb|EFZ87738.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207304|gb|EFZ92254.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211260|gb|EFZ96105.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216031|gb|EGA00762.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323223478|gb|EGA07806.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226792|gb|EGA10982.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231846|gb|EGA15956.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233201|gb|EGA17296.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237268|gb|EGA21333.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245503|gb|EGA29502.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249009|gb|EGA32931.1| tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250632|gb|EGA34513.1| tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256860|gb|EGA40574.1| tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263010|gb|EGA46557.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266010|gb|EGA49505.1| tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272767|gb|EGA56170.1| tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326625147|gb|EGE31492.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 190 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 69/162 (42%), Gaps = 7/162 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ A + L+ IA PTE V+G+ D + TA+ RL +K+RP LI + Sbjct: 7 TGSIAAAVDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIAASFE 66 Query: 69 MVKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124 +K + L+ K WPGP+T V +TT T + RV Sbjct: 67 QLKPYIDDSILTAAQRKAVFDCWPGPVTFVFPAPATTPRW--LTGRFDSLAVRVTNHPLV 124 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLI 166 L YG PL SAN SG V+ + + + P++ Sbjct: 125 VALCNAYGKPLVSTSANLSGLPPCRTVEEV-RAQFGDDFPVV 165 >gi|319795295|ref|YP_004156935.1| sua5/ycio/yrdc/ywlc family protein [Variovorax paradoxus EPS] gi|315597758|gb|ADU38824.1| Sua5/YciO/YrdC/YwlC family protein [Variovorax paradoxus EPS] Length = 211 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 73/161 (45%), Gaps = 4/161 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++A L G +A+PT++ Y LA + A+ +L I++ + L D+S + Sbjct: 17 LKQAVTLLARGEIVAVPTDSSYALACHLDDKDAVDQLRRIRQVDEKHHLTLLCRDLSELA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKKLIE 129 +A VD L K PGP T +L+ +T ++ +S KT RVP +L+ Sbjct: 77 NYARVDNKQYRLLKAATPGPYTFLLE--ATKEVPRRVSHPQRKTIGLRVPDHKVLLELLA 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 +G PL + G+ N + K+I +ID G Sbjct: 135 LHGAPLLATTLIAPGETEALNDAQTIRERFEKQIGAVIDAG 175 >gi|213626209|gb|AAI69842.1| Unknown (protein for MGC:196569) [Xenopus laevis] Length = 912 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 49/190 (25%), Positives = 89/190 (46%), Gaps = 15/190 (7%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 T ++++R+ E + G IPT+TVY L P A+ + Y+ K++ P+ +S Sbjct: 631 TRTSSVRQIAEIMKNGGICGIPTDTVYVLVAACNQPDAVEKAYKTKRQAQDRPMSLWISS 690 Query: 67 ISMV--KKHASVDPLSLHLAKLFWPGPLTLV------LDLLSTTDIHPLSTANLKTACFR 118 + + KH PL + WP ++LV L++L + ++ R Sbjct: 691 LEQLASAKHL-FSPLLWDFMQKAWPSSISLVIPRGPWLEVLGAKESSKY-IGTPQSIAIR 748 Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 +P C T LI+ G P+A+ SAN SG+ T+ + + + ++ ++ G S + Sbjct: 749 IPDCTVTTHLIDMVG-PIAVTSANPSGEADTTHHNQVF-AKLGDKVNGVLCDGPSPENIA 806 Query: 178 STIVNVQCEK 187 ST+V+ C K Sbjct: 807 STVVD--CTK 814 >gi|171920600|ref|ZP_02931851.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|188524207|ref|ZP_03004268.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195867355|ref|ZP_03079359.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273280|ref|ZP_03205816.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209554273|ref|YP_002284418.1| Sua5/YciO/YrdC/YwlC family protein [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225550766|ref|ZP_03771715.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|171903310|gb|EDT49599.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|195659977|gb|EDX53357.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660831|gb|EDX54084.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198249800|gb|EDY74580.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209541774|gb|ACI60003.1| Sua5/YciO/YrdC/YwlC family protein [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225379920|gb|EEH02282.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 186 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 60/213 (28%), Positives = 96/213 (45%), Gaps = 35/213 (16%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+I IT+ NA+ A L A + IPT+T+ GL +++ +YEIK+R + Sbjct: 1 MKIYRITNLNAIYDA---LVANKCVLIPTDTIIGLLAKNQDV-----IYEIKRRDRNKKI 52 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 + V+D ++ + LFWPG +T++ + +S +R+P Sbjct: 53 VRFVADYKLL---GDLTVEQEQFLDLFWPGSVTVIKNGVS----------------YRMP 93 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + KLI+ G PL SAN SG+ + N + LI +IG+ ST Sbjct: 94 NSPYILKLIQKLG-PLYCSSANISGEEPVKNHNEAI-FKFGANSKLIYVEAQQQIGVPST 151 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEY 212 IV++ + VR G IE + I EL+Y Sbjct: 152 IVDIDKWEYVR----RGANIEMVDMFIK-ELKY 179 >gi|197263827|ref|ZP_03163901.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205354969|ref|YP_002228770.1| ribosome maturation factor [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858644|ref|YP_002245295.1| ribosome maturation factor [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|197242082|gb|EDY24702.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205274750|emb|CAR39807.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206710447|emb|CAR34805.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326630118|gb|EGE36461.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 190 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 43/140 (30%), Positives = 61/140 (43%), Gaps = 6/140 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ A + L+ IA PTE V+G+ D + TA+ RL +K+RP LI + Sbjct: 7 TGSIAAAVDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIAASFE 66 Query: 69 MVKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124 +K + L+ K WPGP+T V +TT T + RV Sbjct: 67 QLKPYIDDSILTAAQRKAVFDCWPGPVTFVFPAPATTPRW--LTGRFDSLAVRVTNHPLV 124 Query: 125 KKLIETYGHPLAIPSANRSG 144 L YG PL SAN SG Sbjct: 125 VALCNAYGKPLVSTSANLSG 144 >gi|313679703|ref|YP_004057442.1| translation factor sua5 [Oceanithermus profundus DSM 14977] gi|313152418|gb|ADR36269.1| translation factor SUA5 [Oceanithermus profundus DSM 14977] Length = 197 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 81/185 (43%), Gaps = 15/185 (8%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK----HASVDPLS 80 +A PT+T +GL + P A+ R+Y +K R PL V+D++ ++ P Sbjct: 18 LAWPTDTTWGLLARADRPEALARIYRVKGRDPAKPLQLLVADLAAARRLLDPGWDAAPFE 77 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPLAIPS 139 LA+ FWPG LTLV + P + + R+P ++L+ G A S Sbjct: 78 -RLARAFWPGALTLV---VPAGPEAPEACVHEGKVGLRLPADPELRRLLARAGGYAAATS 133 Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEI 199 N SG+ + + L + + I G + ST+V++ RILR G + Sbjct: 134 LNPSGRPPVLRYRDALRYADWVD---RIHPGEAGGTEASTVVDLTVP---RILREGAVPA 187 Query: 200 ETLKR 204 ++R Sbjct: 188 ADVRR 192 >gi|295696805|ref|YP_003590043.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus tusciae DSM 2912] gi|295412407|gb|ADG06899.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus tusciae DSM 2912] Length = 221 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 6/151 (3%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 +D + KA E L G +P +TVYG + + R+Y IK+R P + + ++ Sbjct: 14 SDEEGIAKAVEVLSVGGVAILPADTVYGFFASAVQREPVERVYRIKQREKRKPFVIYTNE 73 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT--ACFRVPCGFT 124 V+ V+ + L +L WP L+L+ L DI P N + A Sbjct: 74 -KKVRDIVEVNETAERLIELVWPKALSLI---LPKRDIIPDWFTNFQRTLAVMTAQNRII 129 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHIL 155 ++I P+ + N SG+ + + ++ Sbjct: 130 SRVIAEVDEPIFGTTCNMSGEPELKKAEEVI 160 >gi|332295207|ref|YP_004437130.1| SUA5/yciO/yrdC domain protein [Thermodesulfobium narugense DSM 14796] gi|332178310|gb|AEE13999.1| SUA5/yciO/yrdC domain protein [Thermodesulfobium narugense DSM 14796] Length = 203 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 46/185 (24%), Positives = 87/185 (47%), Gaps = 8/185 (4%) Query: 27 IPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS---VD-PLSLH 82 +PT+T++ L D+R+ R++++K+R V ++ + + A+ VD + L Sbjct: 21 VPTDTLFALTGDARSEEVASRIFDVKRRLPDKSFPVFVPSLNWLLEKANFKYVDLEIFLR 80 Query: 83 LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANR 142 L+ +FWPGPLT+V + + + A V K+ E P+ SAN Sbjct: 81 LSSIFWPGPLTIVSRVFFDFKLSEKVVLDNFLALRVVSHPVINKIFEDINFPIIGTSANI 140 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202 SG+I+ + ++ K I G + + ST+ V+ + V +LR G ++ L Sbjct: 141 SGKINPLSQDE-FDKTLLKGIDFFAQGELIYY-VPSTV--VKLDSNVEVLREGVIKKGVL 196 Query: 203 KRAIS 207 ++ +S Sbjct: 197 EKVLS 201 >gi|213626671|gb|AAI69844.1| LOC398207 protein [Xenopus laevis] Length = 912 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 49/190 (25%), Positives = 89/190 (46%), Gaps = 15/190 (7%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 T ++++R+ E + G IPT+TVY L P A+ + Y+ K++ P+ +S Sbjct: 631 TRTSSVRQIAEIMKNGGICGIPTDTVYVLVAACNQPDAVEKAYKTKRQAQDRPMSLWISS 690 Query: 67 ISMV--KKHASVDPLSLHLAKLFWPGPLTLV------LDLLSTTDIHPLSTANLKTACFR 118 + + KH PL + WP ++LV L++L + ++ R Sbjct: 691 LEQLASAKHL-FSPLLWDFMQKAWPSSISLVIPRGPWLEVLGAKESSKY-IGTPQSIAIR 748 Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 +P C T LI+ G P+A+ SAN SG+ T+ + + + ++ ++ G S + Sbjct: 749 IPDCTVTTHLIDMVG-PIAVTSANPSGEADTTHHNQVF-AKLGDKVNGVLCDGPSPENIA 806 Query: 178 STIVNVQCEK 187 ST+V+ C K Sbjct: 807 STVVD--CTK 814 >gi|16766691|ref|NP_462306.1| ribosome maturation factor [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167995177|ref|ZP_02576267.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|81521479|sp|Q8ZLN0|RIMN_SALTY RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|16421958|gb|AAL22265.1| putative translation factor [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|205327095|gb|EDZ13859.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261248559|emb|CBG26397.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995611|gb|ACY90496.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159945|emb|CBW19464.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914425|dbj|BAJ38399.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321226454|gb|EFX51504.1| YrdC subfamily, required for N6-threonylcarbamoyl adenosine t(6)A37 modification in tRNA [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323131760|gb|ADX19190.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332990254|gb|AEF09237.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 190 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 42/134 (31%), Positives = 57/134 (42%), Gaps = 6/134 (4%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 IA PTE V+G+ D + TA+ RL +K+RP LI + +K + L+ Sbjct: 23 IAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIAASFEQLKPYIDDSILTAAQR 82 Query: 85 KLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSA 140 K WPGP+T V +TT T + RV L YG PL SA Sbjct: 83 KAVFDCWPGPVTFVFPAPATTPRW--LTGRFDSLAVRVTNHPLVVALCNAYGKPLVSTSA 140 Query: 141 NRSGQISITNVKHI 154 N SG V+ + Sbjct: 141 NLSGLPPCRTVEEV 154 >gi|170699294|ref|ZP_02890343.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia ambifaria IOP40-10] gi|170135786|gb|EDT04065.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia ambifaria IOP40-10] Length = 210 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 73/161 (45%), Gaps = 4/161 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A + + G IAIPT++ Y LA + A+ R+ I+ L V D+S + Sbjct: 17 IKQAADIVSKGGVIAIPTDSSYALACHLDDKDAVERVRRIRGLDEKQHLSLLVRDLSELA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129 A VD K PGP +L +T ++ LS + KT RVP T L+E Sbjct: 77 NFAMVDNRQYRQIKSVTPGPYVFILQ--ATKEVPRRLSHPSRKTIGLRVPDHAITLALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 + G PL + N + + + K++ L+IDGG Sbjct: 135 SLGQPLLGTTLILPPDDEPLNDPEDIRARLEKQVDLVIDGG 175 >gi|126664113|ref|ZP_01735106.1| translation factor [Flavobacteria bacterium BAL38] gi|126623827|gb|EAZ94522.1| translation factor [Flavobacteria bacterium BAL38] Length = 206 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 52/198 (26%), Positives = 89/198 (44%), Gaps = 13/198 (6%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK---RPAMNPLIC-HVSD 66 A++K L G + PT+TVYGL D N A+ +L +IK A +C +S+ Sbjct: 16 AIKKVVSVLKDGGLVIYPTDTVYGLGCDITNSRALEKLAKIKGIKLEKANFSFVCSSLSN 75 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTK 125 +S K +D + + K PGP T +L D+ P KT RVP Sbjct: 76 LSDYVKQ--IDTSTFKILKRALPGPYTFILP--GNNDL-PREFRKKKTVGIRVPANNIAL 130 Query: 126 KLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 +++E G+P+ S + I + ++ ++ L+IDGG + STI+++ Sbjct: 131 QIVEMLGNPIVSTSIRDEDEVIEYSTDPELIFEKWQNKVDLVIDGGYGD-NVASTIIDLT 189 Query: 185 CEKKVRILRPGGLEIETL 202 + ++R G ++ L Sbjct: 190 GHEP-EVIREGKGSLDVL 206 >gi|45440104|ref|NP_991643.1| putative ribosome maturation factor [Yersinia pestis biovar Microtus str. 91001] gi|51597951|ref|YP_072142.1| ribosome maturation factor [Yersinia pseudotuberculosis IP 32953] gi|108809218|ref|YP_653134.1| putative ribosome maturation factor [Yersinia pestis Antiqua] gi|108813983|ref|YP_649750.1| putative ribosome maturation factor [Yersinia pestis Nepal516] gi|145597487|ref|YP_001161562.1| putative ribosome maturation factor [Yersinia pestis Pestoides F] gi|150260706|ref|ZP_01917434.1| hypothetical protein YPE_3022 [Yersinia pestis CA88-4125] gi|153948235|ref|YP_001402826.1| ribosome maturation factor [Yersinia pseudotuberculosis IP 31758] gi|162421283|ref|YP_001605212.1| putative ribosome maturation factor [Yersinia pestis Angola] gi|165927892|ref|ZP_02223724.1| ribosomal modification protein RimN [Yersinia pestis biovar Orientalis str. F1991016] gi|165936405|ref|ZP_02224973.1| ribosomal modification protein RimN [Yersinia pestis biovar Orientalis str. IP275] gi|166010412|ref|ZP_02231310.1| ribosomal modification protein RimN [Yersinia pestis biovar Antiqua str. E1979001] gi|166213341|ref|ZP_02239376.1| ribosomal modification protein RimN [Yersinia pestis biovar Antiqua str. B42003004] gi|167399680|ref|ZP_02305204.1| ribosomal modification protein RimN [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167418979|ref|ZP_02310732.1| ribosomal modification protein RimN [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425696|ref|ZP_02317449.1| ribosomal modification protein RimN [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167468250|ref|ZP_02332954.1| putative ribosome maturation factor [Yersinia pestis FV-1] gi|170022581|ref|YP_001719086.1| putative ribosome maturation factor [Yersinia pseudotuberculosis YPIII] gi|186897147|ref|YP_001874259.1| putative ribosome maturation factor [Yersinia pseudotuberculosis PB1/+] gi|218927452|ref|YP_002345327.1| putative ribosome maturation factor [Yersinia pestis CO92] gi|229836272|ref|ZP_04456439.1| Sua5 YciO YrdC YwlC family protein [Yersinia pestis Pestoides A] gi|229840105|ref|ZP_04460264.1| Sua5 YciO YrdC YwlC family protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842186|ref|ZP_04462341.1| Sua5 YciO YrdC YwlC family protein [Yersinia pestis biovar Orientalis str. India 195] gi|229904514|ref|ZP_04519625.1| Sua5 YciO YrdC YwlC family protein [Yersinia pestis Nepal516] gi|270488268|ref|ZP_06205342.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis KIM D27] gi|294502320|ref|YP_003566382.1| hypothetical protein YPZ3_0210 [Yersinia pestis Z176003] gi|81638257|sp|Q664V8|RIMN_YERPS RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|123245526|sp|Q1C2Y3|RIMN_YERPA RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|123372822|sp|Q1CCY0|RIMN_YERPN RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|123777794|sp|Q74XX5|RIMN_YERPE RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|212288236|sp|A7FNJ8|RIMN_YERP3 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|212288237|sp|B2K500|RIMN_YERPB RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|212288238|sp|A9R933|RIMN_YERPG RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|212288239|sp|A4TH27|RIMN_YERPP RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|212288240|sp|B1JJI2|RIMN_YERPY RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|45434959|gb|AAS60520.1| Putative translation factor (SUA5) [Yersinia pestis biovar Microtus str. 91001] gi|51591233|emb|CAH22899.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP 32953] gi|108777631|gb|ABG20150.1| hypothetical protein YPN_3823 [Yersinia pestis Nepal516] gi|108781131|gb|ABG15189.1| hypothetical protein YPA_3227 [Yersinia pestis Antiqua] gi|115346063|emb|CAL18929.1| conserved hypothetical protein [Yersinia pestis CO92] gi|145209183|gb|ABP38590.1| hypothetical protein YPDSF_0168 [Yersinia pestis Pestoides F] gi|149290114|gb|EDM40191.1| hypothetical protein YPE_3022 [Yersinia pestis CA88-4125] gi|152959730|gb|ABS47191.1| ribosomal modification protein RimN [Yersinia pseudotuberculosis IP 31758] gi|162354098|gb|ABX88046.1| ribosomal modification protein RimN [Yersinia pestis Angola] gi|165915521|gb|EDR34130.1| ribosomal modification protein RimN [Yersinia pestis biovar Orientalis str. IP275] gi|165920168|gb|EDR37469.1| ribosomal modification protein RimN [Yersinia pestis biovar Orientalis str. F1991016] gi|165990502|gb|EDR42803.1| ribosomal modification protein RimN [Yersinia pestis biovar Antiqua str. E1979001] gi|166205639|gb|EDR50119.1| ribosomal modification protein RimN [Yersinia pestis biovar Antiqua str. B42003004] gi|166962973|gb|EDR58994.1| ribosomal modification protein RimN [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167052184|gb|EDR63592.1| ribosomal modification protein RimN [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055386|gb|EDR65180.1| ribosomal modification protein RimN [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169749115|gb|ACA66633.1| SUA5/yciO/yrdC domain [Yersinia pseudotuberculosis YPIII] gi|186700173|gb|ACC90802.1| SUA5/yciO/yrdC domain protein [Yersinia pseudotuberculosis PB1/+] gi|229678632|gb|EEO74737.1| Sua5 YciO YrdC YwlC family protein [Yersinia pestis Nepal516] gi|229690496|gb|EEO82550.1| Sua5 YciO YrdC YwlC family protein [Yersinia pestis biovar Orientalis str. India 195] gi|229696471|gb|EEO86518.1| Sua5 YciO YrdC YwlC family protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706340|gb|EEO92347.1| Sua5 YciO YrdC YwlC family protein [Yersinia pestis Pestoides A] gi|262360400|gb|ACY57121.1| hypothetical protein YPD4_0212 [Yersinia pestis D106004] gi|262364350|gb|ACY60907.1| hypothetical protein YPD8_0217 [Yersinia pestis D182038] gi|270336772|gb|EFA47549.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis KIM D27] gi|294352779|gb|ADE63120.1| hypothetical protein YPZ3_0210 [Yersinia pestis Z176003] gi|320013379|gb|ADV96950.1| Sua5 YciO YrdC YwlC family protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 190 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 60/129 (46%), Gaps = 16/129 (12%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83 IA PTE V+GL D + A+ L +K+RP LI ++ + ++ + + L+ + Sbjct: 23 IAYPTEAVFGLGCDPDSEKAVNTLLALKQRPWQKGLILVAANYAQLEPYINDSMLNEIQR 82 Query: 84 AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACF-----RVPCG-FTKKLIETYGHPL 135 LF WPGP+T V+ + T T CF RV ++L YG PL Sbjct: 83 ETLFSTWPGPITWVIPAR-------VETPQWLTGCFDSLAVRVSNHPLVQQLCAEYGKPL 135 Query: 136 AIPSANRSG 144 SAN SG Sbjct: 136 VSTSANLSG 144 >gi|312172531|emb|CBX80787.1| Uncharacterized protein yciO [Erwinia amylovora ATCC BAA-2158] Length = 207 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 48/194 (24%), Positives = 83/194 (42%), Gaps = 6/194 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E L+ G I PT++ Y L + +A+ R+ I++ + D+S + Sbjct: 18 IKQAVEMLNKGSVIVYPTDSGYALGCKLEDKSAMERICRIRQLDGNHNFTLMCRDLSELS 77 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD + L K PG T +L +T ++ L + KT RVP L+E Sbjct: 78 TYAYVDNTAFRLIKNNTPGNYTFILK--ATKEVPRRLMSEKRKTIGLRVPSNPIALALLE 135 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+ S G + + I K + LII GG +G + T V E Sbjct: 136 ALNEPMMSTSLMLPGNDFTESDPEAIQDEIGKLVDLIIHGGF--LGQQPTTVIDLTENTP 193 Query: 190 RILRPGGLEIETLK 203 ++R G +++ + Sbjct: 194 EVVREGVGDVQPFR 207 >gi|22127897|ref|NP_671320.1| putative ribosome maturation factor [Yersinia pestis KIM 10] gi|21961034|gb|AAM87571.1|AE014004_9 hypothetical protein y4027 [Yersinia pestis KIM 10] Length = 194 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 60/129 (46%), Gaps = 16/129 (12%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83 IA PTE V+GL D + A+ L +K+RP LI ++ + ++ + + L+ + Sbjct: 27 IAYPTEAVFGLGCDPDSEKAVNTLLALKQRPWQKGLILVAANYAQLEPYINDSMLNEIQR 86 Query: 84 AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACF-----RVPCG-FTKKLIETYGHPL 135 LF WPGP+T V+ + T T CF RV ++L YG PL Sbjct: 87 ETLFSTWPGPITWVIPAR-------VETPQWLTGCFDSLAVRVSNHPLVQQLCAEYGKPL 139 Query: 136 AIPSANRSG 144 SAN SG Sbjct: 140 VSTSANLSG 148 >gi|187479076|ref|YP_787101.1| hypothetical protein BAV2596 [Bordetella avium 197N] gi|115423663|emb|CAJ50208.1| conserved hypothetical protein [Bordetella avium 197N] Length = 208 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 51/189 (26%), Positives = 91/189 (48%), Gaps = 12/189 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAV---DSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 L++A +++ G IA+PT++ Y +A D +RRL + +R + L+C D++ Sbjct: 17 LKQAAQWIGDGGLIAVPTDSSYAVAARLDDKDAADRLRRLRGLDERHHLT-LLCR--DLA 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKK 126 + + A VD L KL PGP T +L+ +T ++ +S + KT RVP Sbjct: 74 EIGQFAKVDNRQYRLLKLATPGPWTFILE--ATREVPRRVSHPSRKTIGIRVPDHAVALA 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+E G PL + G+ N +S ++ +ID G +T++++ + Sbjct: 132 LLEQVGAPLLSTTLIPKGEDDALNDAEAISLRFAHDLAAVIDAGACPQH-PTTVIDLTGD 190 Query: 187 KKVRILRPG 195 + V +LR G Sbjct: 191 EPV-VLRRG 198 >gi|149374416|ref|ZP_01892190.1| hypothetical protein MDG893_10226 [Marinobacter algicola DG893] gi|149361119|gb|EDM49569.1| hypothetical protein MDG893_10226 [Marinobacter algicola DG893] Length = 207 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 72/174 (41%), Gaps = 10/174 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + L G I PT++ Y + + A R+ I++ + D+S + Sbjct: 17 INQAVDILRKGGVIVYPTDSAYAIGCHLGDKQAADRIKRIRRLDDKHNFTLMCRDLSDIG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVP-CGFTKKL 127 A VD L K F PG T +LD S +HP KT RVP + L Sbjct: 77 VFAKVDNTQYRLLKNFTPGAYTFILDATSEVPRRLLHP----KRKTIGMRVPDNAIVQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 + G P+ + G + + ++ E+ LIIDGG GLE+T V Sbjct: 133 LAELGEPIMSSTLILPGDEDPMTDPYDIRETLEHELDLIIDGGFC--GLEATTV 184 >gi|308047752|ref|YP_003911318.1| translation factor SUA5 [Ferrimonas balearica DSM 9799] gi|307629942|gb|ADN74244.1| translation factor SUA5 [Ferrimonas balearica DSM 9799] Length = 187 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 6/137 (4%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK--HASVDPLSLH 82 +A PTE V+GL D N A+ RL +IK+RP LI ++ + + S P + Sbjct: 20 VAYPTEAVFGLGCDPSNEEAVSRLLDIKQRPVEKGLILIAANYGQLLPFVNDSALPDARR 79 Query: 83 LAKLF-WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSA 140 A + WPGP T V+ + + T T RV L +G P+ SA Sbjct: 80 EAVMARWPGPTTWVMP--AQPSVPGWVTGQFDTLAVRVTDHAIAADLCRAFGGPVVSTSA 137 Query: 141 NRSGQISITNVKHILSS 157 N +GQ + +L++ Sbjct: 138 NLTGQPPCRSADEVLAA 154 >gi|307566301|ref|ZP_07628743.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella amnii CRIS 21A-A] gi|307344995|gb|EFN90390.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella amnii CRIS 21A-A] Length = 189 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 74/147 (50%), Gaps = 5/147 (3%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + ++KA E + G I PT+TV+G+ D+ N A+ ++Y++K+R LIC V Sbjct: 5 DDIKKAIEVMRQGGIILYPTDTVWGIGCDATNADAVAKVYKLKRRDDSKALICLVDSEDR 64 Query: 70 VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 ++++ +V ++ L + P TL+LD + ++ A + R+ F+K+L Sbjct: 65 LQRYVRNVPQVAWQLLEAV-TKPTTLILD--NAVNLASNLIAEDGSIGMRITNEPFSKEL 121 Query: 128 IETYGHPLAIPSANRSGQISITNVKHI 154 + + SAN SG+ + N + I Sbjct: 122 CYRFQKAIVSTSANISGEPAAQNYRDI 148 >gi|16762880|ref|NP_458497.1| ribosome maturation factor [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29144367|ref|NP_807709.1| ribosome maturation factor [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213023921|ref|ZP_03338368.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213161454|ref|ZP_03347164.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213417232|ref|ZP_03350376.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213428279|ref|ZP_03361029.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213582984|ref|ZP_03364810.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213622290|ref|ZP_03375073.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213650875|ref|ZP_03380928.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289824188|ref|ZP_06543783.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|81593190|sp|Q8Z1W6|RIMN_SALTI RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|25305392|pir||AF1010 conserved hypothetical protein yrdC [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16505187|emb|CAD09183.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29140005|gb|AAO71569.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 190 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 43/146 (29%), Positives = 62/146 (42%), Gaps = 7/146 (4%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 IA PTE V+G+ D + TA+ RL +K+RP LI + +K + L+ Sbjct: 23 IAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIAASFEQLKPYIDDSILTAAQR 82 Query: 85 KLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSA 140 K WPGP+T V +TT T + RV L YG PL SA Sbjct: 83 KAVFDCWPGPVTFVFPAPATTPRW--LTGRFDSLAVRVTNHPLVVALCNAYGKPLVSTSA 140 Query: 141 NRSGQISITNVKHILSSSICKEIPLI 166 N SG V+ + + + P++ Sbjct: 141 NLSGLPPCRTVEEV-RAQFGDDFPVV 165 >gi|300716950|ref|YP_003741753.1| hypothetical protein [Erwinia billingiae Eb661] gi|299062786|emb|CAX59906.1| Conserved uncharacterized protein [Erwinia billingiae Eb661] Length = 206 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 50/186 (26%), Positives = 79/186 (42%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E L+ G I PT++ Y L + +A+ R+ +I+K + D+S + Sbjct: 17 IKQAVELLNKGSVIVYPTDSGYALGCKLEDKSAMERICKIRKLDGNHNFTLVCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD + L K PG T +L +T ++ L KT RVP L+E Sbjct: 77 TYAHVDNTAFRLIKNNTPGNYTFILK--ATKEVPRRLMNDKRKTIGLRVPSNPIALALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+ S G + + SI K + LII GG +G T V E Sbjct: 135 ALNEPMMSTSLMLPGNDFTESDPEAIQDSIGKLVDLIIHGGY--LGQHPTTVIDLTENTP 192 Query: 190 RILRPG 195 ++R G Sbjct: 193 EVVREG 198 >gi|168239765|ref|ZP_02664823.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194734742|ref|YP_002116346.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|204931408|ref|ZP_03222077.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|194710244|gb|ACF89465.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197287578|gb|EDY26970.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204319836|gb|EDZ05046.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 190 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 54/124 (43%), Gaps = 6/124 (4%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 IA PTE V+G+ D + TA+ RL +K+RP LI + +K + L+ Sbjct: 23 IAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIAASFEQLKPYIDDSILTAAQR 82 Query: 85 KLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140 K WPGP+T V +TT T + RV L YG PL SA Sbjct: 83 KAVFDCWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTNHPLVVALCNAYGKPLVSTSA 140 Query: 141 NRSG 144 N SG Sbjct: 141 NLSG 144 >gi|56415322|ref|YP_152397.1| ribosome maturation factor [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197364252|ref|YP_002143889.1| ribosome maturation factor [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|81360772|sp|Q5PIS8|RIMN_SALPA RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|56129579|gb|AAV79085.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095729|emb|CAR61299.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 190 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 42/134 (31%), Positives = 57/134 (42%), Gaps = 6/134 (4%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 IA PTE V+G+ D + TA+ RL +K+RP LI + +K + L+ Sbjct: 23 IAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIAASFEQLKPYIDDSILTAAQR 82 Query: 85 KLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSA 140 K WPGP+T V +TT T + RV L YG PL SA Sbjct: 83 KAVFDCWPGPVTFVFPAPATTPRW--LTGRFDSLAVRVTNHPLVVALCNAYGKPLVSTSA 140 Query: 141 NRSGQISITNVKHI 154 N SG V+ + Sbjct: 141 NLSGLPPCRTVEEV 154 >gi|257126756|ref|YP_003164870.1| Sua5/YciO/YrdC/YwlC family protein [Leptotrichia buccalis C-1013-b] gi|257050695|gb|ACV39879.1| Sua5/YciO/YrdC/YwlC family protein [Leptotrichia buccalis C-1013-b] Length = 219 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 51/205 (24%), Positives = 95/205 (46%), Gaps = 21/205 (10%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV-----KKH 73 L G PT+TVYG+ + + ++Y+IKKR +I +S+ ++ + Sbjct: 21 LKNGGVAVFPTDTVYGIGTLPK-KEFVEKIYKIKKRDFSKKIIALISNQKILSSLINETS 79 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132 ++D +S L K +WPG LT++ + + ++ T R+P ++IE G Sbjct: 80 ENMDKISNILNK-YWPGELTVIFR--ANQNFTKKFDKDMHTIGIRIPKNEIALEIIENSG 136 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLII-DGGISKI--------GLESTIVNV 183 + SAN SG+ S+T ++ L+ ++ K + + I D I G STI+ Sbjct: 137 GVVLTTSANISGENSVTKFEN-LNENLLKNVDVAISDESIENFEKINNKLTGKPSTIIKY 195 Query: 184 QCEKKVRILRPGGLEIETLKRAISV 208 + K + +LR G + E + + + Sbjct: 196 ENGKLI-LLREGNISFEEILKEFQI 219 >gi|213865417|ref|ZP_03387536.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 182 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 42/134 (31%), Positives = 57/134 (42%), Gaps = 6/134 (4%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 IA PTE V+G+ D + TA+ RL +K+RP LI + +K + L+ Sbjct: 15 IAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIAASFEQLKPYIDDSILTAAQR 74 Query: 85 KLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSA 140 K WPGP+T V +TT T + RV L YG PL SA Sbjct: 75 KAVFDCWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTNHPLVVALCNAYGKPLVSTSA 132 Query: 141 NRSGQISITNVKHI 154 N SG V+ + Sbjct: 133 NLSGLPPCRTVEEV 146 >gi|71892003|ref|YP_277733.1| RNA-binding protein [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|123641086|sp|Q493I0|RIMN_BLOPB RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|71796109|gb|AAZ40860.1| putative RNA-binding protein with unique protein fold, with YrdC/RibB domain [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 194 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 8/141 (5%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L G I PTE+V+GL D N AI L +IK R LI ++ + + K+ Sbjct: 22 LSQGKVIIYPTESVFGLGCDPDNKNAISTLLKIKNRSWKKGLILVAANYTQLLKYIDDSC 81 Query: 79 LS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT--KKLIETYGH 133 L+ +++F WPGP+T V + + T + RV F ++L +G Sbjct: 82 LNETQRSRVFSTWPGPMTWVFP--AQANRSYWLTGQFSSVAVRV-SHFEPIQRLCLAFGK 138 Query: 134 PLAIPSANRSGQISITNVKHI 154 PL SAN SGQ+ ++ + Sbjct: 139 PLVSTSANLSGQLPARTIEEV 159 >gi|320008547|gb|ADW03397.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces flavogriseus ATCC 33331] Length = 215 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 53/204 (25%), Positives = 89/204 (43%), Gaps = 15/204 (7%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + LR+A + G + +PT+TVYG+ D+ + + L + K R P + + Sbjct: 14 TTGLREAASAVRRGELVVLPTDTVYGIGADAFSSEGVADLLDAKGRGRNMPTPVLIGSPN 73 Query: 69 MVKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125 + H V S L FWPG LTLV + T T R+P Sbjct: 74 TL--HGLVTDFSEQAWELVDAFWPGALTLVAKHQPSLQWDLGDTRG--TVAVRMPLHPVA 129 Query: 126 KLIETYGHPLAIPSANRSGQIS---ITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 + T P+A+ SAN +G S + +L S+ + +DGG + + S+IV+ Sbjct: 130 IELLTEVGPMAVSSANLTGHPSPETCDAAQEMLGDSVS----VYLDGGSTPGIVPSSIVD 185 Query: 183 VQCEKKVRILRPGGLEIETLKRAI 206 V + +LR G + +E L++ + Sbjct: 186 VTGRIPL-LLRAGAIPVEELRKVV 208 >gi|288803651|ref|ZP_06409081.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella melaninogenica D18] gi|302345636|ref|YP_003813989.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella melaninogenica ATCC 25845] gi|288333891|gb|EFC72336.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella melaninogenica D18] gi|302149344|gb|ADK95606.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella melaninogenica ATCC 25845] Length = 189 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 73/148 (49%), Gaps = 5/148 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++KA E + G I PT+TV+G+ D+ N A+ ++Y +K+R LIC V + Sbjct: 4 EDDIKKAIEVMRKGGIILYPTDTVWGIGCDATNAEAVAKVYALKRRDDSKALICLVDSDN 63 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 ++++ +V ++ L + P TL+LD ++ P A + R+ F+ + Sbjct: 64 RLQRYVRNVPDVAWQLIEAV-EKPTTLILD--GAVNLAPNLIAEDGSIGIRITKEPFSHE 120 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHI 154 L + + SAN SG+ + N + I Sbjct: 121 LCYRFQKAIVSTSANVSGEPAAQNYRDI 148 >gi|152979360|ref|YP_001344989.1| Sua5/YciO/YrdC/YwlC family protein [Actinobacillus succinogenes 130Z] gi|150841083|gb|ABR75054.1| Sua5/YciO/YrdC/YwlC family protein [Actinobacillus succinogenes 130Z] Length = 207 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 57/196 (29%), Positives = 92/196 (46%), Gaps = 9/196 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S + +A E L G I PT++ Y L + A+ R+ I+ P + SD+S Sbjct: 14 SRLINQAVEILRNGGVIVYPTDSGYALGCMIGDKHAMDRIVAIRHLPQGHNFTLVCSDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKK 126 + +A+V ++ L K PG T +L +T ++ L T+ KT RVP Sbjct: 74 ELSHYATVSNVAYRLIKNNTPGRYTFILT--ATKELPRRLMTSKRKTIGLRVPDNQIALD 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVK-HILSSSICKEIPLIIDGGISKIGLE-STIVNVQ 184 L++T G P+ S G+ IT + + +++ LII GG +G E +T+V++ Sbjct: 132 LLKTLGEPILSCSLMLPGEDHITQSDPEEIRDRLERQVELIIHGGY--LGQEPTTVVDLT 189 Query: 185 CEKKVRILRPGGLEIE 200 E V ILR G +E Sbjct: 190 DETPV-ILREGSGSVE 204 >gi|237714230|ref|ZP_04544711.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262408394|ref|ZP_06084941.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294647539|ref|ZP_06725118.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides ovatus SD CC 2a] gi|294808576|ref|ZP_06767320.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides xylanisolvens SD CC 1b] gi|298482087|ref|ZP_07000275.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. D22] gi|229445722|gb|EEO51513.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262353946|gb|EEZ03039.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292637107|gb|EFF55546.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides ovatus SD CC 2a] gi|294444219|gb|EFG12942.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides xylanisolvens SD CC 1b] gi|298271644|gb|EFI13217.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. D22] Length = 204 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 51/190 (26%), Positives = 87/190 (45%), Gaps = 13/190 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSDISMV 70 L++ + L+ G I PT+T+Y + AI R+ IK+ P N L D+S + Sbjct: 15 LQRIIDILNDGGLIIYPTDTMYAIGCHGLKERAIERICRIKEIDPRKNNLSIICYDLSSI 74 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129 ++A VD L K PGP T + L+ T+ P N K R+P ++++ Sbjct: 75 SEYAKVDNNVFKLMKHNLPGPFTFI---LNGTNRLPKIFRNRKEVGIRMPDNNISREIAR 131 Query: 130 TYGHPL---AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC- 185 P+ +P +T+ ++ + L+IDGGI G+E + V V+C Sbjct: 132 LLDAPIMTTTLPYEEHEDLEYMTD-PELIDEKFGDIVDLVIDGGIG--GIEPSTV-VKCT 187 Query: 186 EKKVRILRPG 195 + ++ I+R G Sbjct: 188 DNELEIVRQG 197 >gi|327290899|ref|XP_003230159.1| PREDICTED: hypothetical protein LOC100563185 [Anolis carolinensis] Length = 874 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 48/189 (25%), Positives = 87/189 (46%), Gaps = 17/189 (8%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++++++ E + G IPT+TVY LA P A+ + Y K++ P+ +S + Sbjct: 614 ASSVKQVAEIMKQGGACGIPTDTVYVLAAACNRPDAVEKAYNTKRQAEDRPMSLWISSLK 673 Query: 69 M---VKKHASVDPLSLHLAKLFWPGPLTLV------LDLLSTTDIHPLSTANLKTACFRV 119 VK+ S P+ + W P++LV LD L D ++ R+ Sbjct: 674 QLEPVKRLFS--PILWDFMEAAWASPISLVIPRGEWLDYLGLKD-SAKYVGTPQSIAIRI 730 Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P C T LI+ G P+ + SAN +G+ T+ + + + ++ ++ G S + S Sbjct: 731 PDCSVTTHLIDLVG-PITVTSANPTGEADTTHHNQVF-AKLGNKVDAVLCAGPSPENIAS 788 Query: 179 TIVNVQCEK 187 T+V+ C K Sbjct: 789 TVVD--CTK 795 >gi|326796235|ref|YP_004314055.1| Sua5/YciO/YrdC/YwlC family protein [Marinomonas mediterranea MMB-1] gi|326546999|gb|ADZ92219.1| Sua5/YciO/YrdC/YwlC family protein [Marinomonas mediterranea MMB-1] Length = 206 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 45/180 (25%), Positives = 81/180 (45%), Gaps = 11/180 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A + + G IA PT++ Y L + A+ R+ I++ + V D+S + Sbjct: 17 IKQAAQIVREGGVIAYPTDSGYSLGCHIGDKKALERIRTIRRLDDKHNFTLVVRDLSEIS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVP-CGFTKKL 127 +A D + L K PGP T + + S +HP KT R+P L Sbjct: 77 TYARFDNVMYRLLKHNTPGPYTFIFNATSEVPRRLMHP----KRKTIGIRIPQSNIVSAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCE 186 ++ G PL S G+ + + ++ ++ L+IDGG G+E +T+V++ E Sbjct: 133 LDELGEPLMSASLILPGESDPMMDPYDIRGTLEHQLDLVIDGGYC--GMEPTTVVHMDSE 190 >gi|315654803|ref|ZP_07907708.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus curtisii ATCC 51333] gi|315490764|gb|EFU80384.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus curtisii ATCC 51333] Length = 215 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 52/195 (26%), Positives = 89/195 (45%), Gaps = 20/195 (10%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-- 82 + +PT+TVYG+A P A+ RL K R P VS + ++ + +P + Sbjct: 29 LVMPTDTVYGIASVPFAPVAVSRLQNAKGRGEDFPPPVLVSGPAALEDLMAPEPQASASQ 88 Query: 83 ------LAKLFWPGPLTLVLDLLSTTDIHPLSTANL----KTACFRVPCGFTKKLIETYG 132 LA+ FWPG LT+++ +P +L T R P I Y Sbjct: 89 RRAARVLAERFWPGALTIIV------TANPALGWDLGQTHGTIALRQPDHPRALEILRYT 142 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192 PLA+ SAN + T++ ++ + + + +D G+S G STIV++ + R+L Sbjct: 143 GPLAVTSANLHTRPPATDIAAA-TNYFGERVSVYVDAGVSPSGHPSTIVSL-TQDSPRLL 200 Query: 193 RPGGLEIETLKRAIS 207 R G + + + A++ Sbjct: 201 RQGDIPLSDILAALA 215 >gi|303237066|ref|ZP_07323636.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella disiens FB035-09AN] gi|302482453|gb|EFL45478.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella disiens FB035-09AN] Length = 189 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 73/151 (48%), Gaps = 5/151 (3%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 +T ++KA E + G I PT+TV+G+ D+ N A+ ++YEIK R L+C V Sbjct: 1 MTQQEDIKKAVEVMRKGGVILYPTDTVWGIGCDATNAEAVAKVYEIKHRDDSKALVCLVD 60 Query: 66 DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 ++++ +V ++ L + P T++LD + ++ A + R+ F Sbjct: 61 SQDRLQRYVRNVPDVAWQLMEAV-VKPTTIILD--NAVNLASNLVAEDGSIGMRITNEPF 117 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHI 154 +K+L + + SAN SG+ + N I Sbjct: 118 SKELCFRFQKAIVSTSANISGEPAAQNYPDI 148 >gi|153875764|ref|ZP_02003416.1| translation factor [Beggiatoa sp. PS] gi|152067772|gb|EDN66584.1| translation factor [Beggiatoa sp. PS] Length = 208 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 47/193 (24%), Positives = 83/193 (43%), Gaps = 6/193 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + + G I PT++ Y L + A+ R+ I++ + S + Sbjct: 17 ISQTVDIIKKGGVIVYPTDSSYALGCYMGDKAAMERISFIRQTDKNHNFTLVCRAFSEIG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129 +A+V+ + L K PGP T +L +T ++ L KT RVP + ++E Sbjct: 77 TYANVNNTAFRLMKSLTPGPYTFILK--ATNEVPRRLQNPKRKTIGVRVPDHSIVQAIVE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL + G+ + + + K++ LIIDGG G E+T + + Sbjct: 135 MLGEPLMSSTLIMPGKETPETEPDTIKELLQKQVDLIIDGG--NCGFEATTIVDMMTESP 192 Query: 190 RILRPGGLEIETL 202 +ILR G I+ L Sbjct: 193 QILRQGKGPIDVL 205 >gi|332300598|ref|YP_004442519.1| Sua5/YciO/YrdC/YwlC family protein [Porphyromonas asaccharolytica DSM 20707] gi|332177661|gb|AEE13351.1| Sua5/YciO/YrdC/YwlC family protein [Porphyromonas asaccharolytica DSM 20707] Length = 195 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 51/189 (26%), Positives = 87/189 (46%), Gaps = 10/189 (5%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV-SDIS 68 +A R+A + L G I PT+T++GL D+ N A+ RL +K RP P++ V SD+ Sbjct: 12 SAAREAVDVLQRGGIILYPTDTIWGLGCDATNEEAVDRLSALKGRPTGKPMLMLVDSDVR 71 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +V ++ L + PLT++ ++ P A+ + R+ +++ Sbjct: 72 IQSYVRTVPSMAFQLIDVAV-RPLTIIYP--EGRNVAPQLLADDGSIGIRIASDTLCQEI 128 Query: 128 IETYGHPLAIPSANRSGQISITNVKHI---LSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 PL SAN +G S N I L + +PL D I G+ S I+ + Sbjct: 129 CRMLRRPLVSTSANLAGTSSPHNYSEIDPALIKMVDYVVPLRQDEHID--GMPSDIIKLG 186 Query: 185 CEKKVRILR 193 +VR++R Sbjct: 187 INNEVRVIR 195 >gi|238021424|ref|ZP_04601850.1| hypothetical protein GCWU000324_01324 [Kingella oralis ATCC 51147] gi|237868404|gb|EEP69410.1| hypothetical protein GCWU000324_01324 [Kingella oralis ATCC 51147] Length = 207 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 48/193 (24%), Positives = 91/193 (47%), Gaps = 12/193 (6%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 ++++ +ALR+ + G IA PTE+ YG+ + R+ A+R + +KKRP I Sbjct: 23 RLLTHHAPSALRR---HIQRGGLIAYPTESCYGIGANPRHAHALRAILRLKKRPQHKGFI 79 Query: 62 CHVSDISMVKKHASVDPLSL--HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA-CFR 118 ++++ ++ P ++ HL + WP P++ VL + + PL N + R Sbjct: 80 TIGNNLAQLEPLLQRQPENVRQHL-RATWPAPISFVLP--AHPRVLPLLRGNQRNRLAVR 136 Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 VP ++L G PL S N+SG+ + + + + + I+ G + K Sbjct: 137 VPNHAVARELCRIAGTPLVSTSCNQSGKRACKSEREV--RRLFGRKLWIVGGRVGKRKQP 194 Query: 178 STIVNVQCEKKVR 190 S IV+ +++R Sbjct: 195 SEIVDWAENRRLR 207 >gi|148235871|ref|NP_001082069.1| putative transmembrane protein TA-2 [Xenopus laevis] gi|12007284|gb|AAG45109.1|AF310008_1 putative transmembrane protein TA-2 [Xenopus laevis] Length = 912 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/190 (25%), Positives = 88/190 (46%), Gaps = 15/190 (7%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 T ++++R+ E + G IPT+TVY L P A+ + Y+ K++ P+ +S Sbjct: 631 TRTSSVRQIAEIMKNGGICGIPTDTVYVLVAACNQPDAVEKAYKTKRQAQDRPMSLWISS 690 Query: 67 ISMV--KKHASVDPLSLHLAKLFWPGPLTLV------LDLLSTTDIHPLSTANLKTACFR 118 + + KH PL WP ++LV L++L + ++ R Sbjct: 691 LEQLASAKHL-FSPLLWDFMHKAWPSSISLVIPRGPWLEVLGAKESSKY-IGTPQSIAIR 748 Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 +P C T LI+ G P+A+ SAN SG+ T+ + + + ++ ++ G S + Sbjct: 749 IPDCTVTTHLIDMVG-PIAVTSANPSGEADTTHHNQVF-AKLGDKVDGVLCDGPSPENIA 806 Query: 178 STIVNVQCEK 187 ST+V+ C K Sbjct: 807 STVVD--CTK 814 >gi|254786472|ref|YP_003073901.1| Sua5/YciO/YrdC/YwlC family protein [Teredinibacter turnerae T7901] gi|237685207|gb|ACR12471.1| Sua5/YciO/YrdC/YwlC family protein [Teredinibacter turnerae T7901] Length = 224 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 52/208 (25%), Positives = 88/208 (42%), Gaps = 10/208 (4%) Query: 2 QIMSITDSNA----LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 Q SI N + +A + L G I PT++ Y L + A+ R+ +++ Sbjct: 21 QFFSIHPENPQARLISQAVDILRRGGLIVYPTDSAYALGCHIGDKLALDRIRALRQLDKH 80 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTAC 116 + D+S + +A VD + + K PGP T +L+ +T+++ L KT Sbjct: 81 HNFTLMCRDLSELANYARVDNTAYRIIKSHTPGPFTFILN--ATSEVPRRLQHPKRKTLG 138 Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 RVP L+E G PL S G + + ++ + L+IDGG G Sbjct: 139 MRVPDNAIALALLEELGEPLMSSSLILPGDTLPLTDPYDIRDTLEHQCELVIDGGFC--G 196 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLK 203 LE T V + +++R G +I + Sbjct: 197 LEPTSVIDLTGDEPQVMREGCGDISDFR 224 >gi|296102093|ref|YP_003612239.1| hypothetical protein ECL_01732 [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056552|gb|ADF61290.1| hypothetical protein ECL_01732 [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 206 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/186 (26%), Positives = 79/186 (42%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E + G I PT++ Y L + A+ R+ I++ P + D+S + Sbjct: 17 INQAVEIVRKGGVIVYPTDSGYALGCKIEDKAAMERICRIRQLPDGHNFTLMCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD ++ L K PG T +L T ++ L KT RVP + L+E Sbjct: 77 TYAYVDNVAFRLIKNNTPGNYTFILK--GTKEVPRRLLQEKRKTIGMRVPSNPIAQALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 T G P+ S G + + + K + LII GG +G + T V E Sbjct: 135 TLGEPMLSTSLMLPGSEFTESDPEEIKDRLEKVVELIIHGGY--LGQQPTTVVDLTEDAP 192 Query: 190 RILRPG 195 ++R G Sbjct: 193 EVIREG 198 >gi|152969813|ref|YP_001334922.1| hypothetical protein KPN_01259 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238894321|ref|YP_002919055.1| hypothetical protein KP1_2300 [Klebsiella pneumoniae NTUH-K2044] gi|262043011|ref|ZP_06016154.1| Sua5/YciO/YrdC/YwlC family protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330002627|ref|ZP_08304382.1| Sua5/YciO/YrdC/YwlC family protein [Klebsiella sp. MS 92-3] gi|150954662|gb|ABR76692.1| hypothetical protein KPN_01259 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238546637|dbj|BAH62988.1| hypothetical protein KP1_2300 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259039613|gb|EEW40741.1| Sua5/YciO/YrdC/YwlC family protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328537247|gb|EGF63508.1| Sua5/YciO/YrdC/YwlC family protein [Klebsiella sp. MS 92-3] Length = 206 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 50/186 (26%), Positives = 79/186 (42%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E + G I PT++ Y L + A+ R+ I++ P + D+S + Sbjct: 17 INQAVEIVRKGGVIVYPTDSGYALGCKIEDKGAMERICRIRQLPDGHNFTLMCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD ++ L K PG T +L T ++ L KT RVP + L+E Sbjct: 77 TYAFVDNVAFRLMKNNTPGNYTFILK--GTKEVPRRLLQEKRKTIGMRVPSNPIAQALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 T G P+ S G + + + K + LII GG +G + T V E Sbjct: 135 TLGEPMLSTSLMLPGSDFTESDPEEIKDRLEKVVDLIIHGGF--LGQQPTTVIDLTEDTP 192 Query: 190 RILRPG 195 +LR G Sbjct: 193 VVLREG 198 >gi|145627820|ref|ZP_01783621.1| putative translation factor, SUA5 [Haemophilus influenzae 22.1-21] gi|144979595|gb|EDJ89254.1| putative translation factor, SUA5 [Haemophilus influenzae 22.1-21] Length = 207 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 54/191 (28%), Positives = 85/191 (44%), Gaps = 15/191 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E L G I PT++ Y L + A+ R+ I+K P + SD+S + Sbjct: 17 INQAVEILQKGGVIVYPTDSGYALGCMMGDKHAMDRIVAIRKLPEGHNFTLVCSDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A+V+ ++ L K PG T + L +T ++ L T+ KT RVP L+ Sbjct: 77 TYATVNNIAYRLIKNNTPGRYTFI--LTATKELPRRLMTSKRKTIGLRVPDNKIALDLLS 134 Query: 130 TYGHP-----LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 G P L +P+ + Q ++ L ++ LII GG +G E T V Sbjct: 135 ALGEPILSCSLMLPNEEHTTQSDPEEIRDRLE----HQVDLIIHGGY--LGQEPTTVVDL 188 Query: 185 CEKKVRILRPG 195 E+ ILR G Sbjct: 189 TEESPVILREG 199 >gi|218438456|ref|YP_002376785.1| Sua5/YciO/YrdC/YwlC family protein [Cyanothece sp. PCC 7424] gi|218171184|gb|ACK69917.1| Sua5/YciO/YrdC/YwlC family protein [Cyanothece sp. PCC 7424] Length = 217 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 51/196 (26%), Positives = 92/196 (46%), Gaps = 12/196 (6%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 ++ + + L +G + PT+TVY + D +A+ R+ ++K+ PL S +S + Sbjct: 16 SIEQISDALKSGAIMLYPTDTVYAIGCDMNTKSAVERVRQLKQLSNDKPLTFLCSSLSNI 75 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVPCG-FTKKL 127 ++A V + + K PGP T LL T + P + + KT RVP + L Sbjct: 76 SEYALVTDQAYRIMKRLIPGPYTF---LLPATKLVPKLVMSPKRKTTGIRVPDNEVCQAL 132 Query: 128 IETYGHPLAIPSA---NRSGQISITNV-KHILSSSICKEIPLIIDGGISKIGLE-STIVN 182 + + +P+ SA + G V K L ++ K + +IID G+ G E STI++ Sbjct: 133 LTSLDNPIISASAHLPDEEGDFPTMGVEKARLFDALDKLVDIIIDSGVEP-GFEVSTIID 191 Query: 183 VQCEKKVRILRPGGLE 198 + + + + + G E Sbjct: 192 LTDNEPIIVRQGLGWE 207 >gi|206575970|ref|YP_002239002.1| Sua5/YciO/YrdC/YwlC family protein [Klebsiella pneumoniae 342] gi|288935910|ref|YP_003439969.1| Sua5/YciO/YrdC/YwlC family protein [Klebsiella variicola At-22] gi|290512944|ref|ZP_06552308.1| Sua5/YciO/YrdC/YwlC family protein [Klebsiella sp. 1_1_55] gi|206565028|gb|ACI06804.1| Sua5/YciO/YrdC/YwlC family protein [Klebsiella pneumoniae 342] gi|288890619|gb|ADC58937.1| Sua5/YciO/YrdC/YwlC family protein [Klebsiella variicola At-22] gi|289774557|gb|EFD82561.1| Sua5/YciO/YrdC/YwlC family protein [Klebsiella sp. 1_1_55] Length = 206 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 50/186 (26%), Positives = 79/186 (42%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E + G I PT++ Y L + A+ R+ I++ P + D+S + Sbjct: 17 INQAVEIVRKGGVIVYPTDSGYALGCKIEDKGAMERICRIRQLPDGHNFTLMCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD ++ L K PG T +L T ++ L KT RVP + L+E Sbjct: 77 TYAFVDNVAFRLMKNNTPGNYTFILK--GTKEVPRRLLQEKRKTIGMRVPSNPIAQALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 T G P+ S G + + + K + LII GG +G + T V E Sbjct: 135 TLGEPMLSTSLMLPGSDFTESDPEEIKDRLEKVVDLIIHGGF--LGQQPTTVIDLTEDTP 192 Query: 190 RILRPG 195 +LR G Sbjct: 193 VVLREG 198 >gi|255691112|ref|ZP_05414787.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides finegoldii DSM 17565] gi|260623465|gb|EEX46336.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides finegoldii DSM 17565] Length = 204 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 53/190 (27%), Positives = 84/190 (44%), Gaps = 13/190 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSDISMV 70 L++ + L+ G I PT+T+Y + AI R+ IK+ P N L D+S + Sbjct: 15 LQRIIDILNDGGLIIYPTDTMYAIGCHGLKERAIERICRIKEIDPRKNNLSIICYDLSSI 74 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF----TKK 126 ++A VD L K PGP T + L+ T+ P N K R+P + Sbjct: 75 SEYAKVDNNVFKLMKHNLPGPFTFI---LNGTNRLPKIFRNRKEVGIRMPDNHIIREIAR 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC- 185 L++ +P IT+ ++ + L+IDGGI G+E + V V+C Sbjct: 132 LLDAPIMTTTLPHEENEDLEYITD-PELIDEKFGDIVDLVIDGGIG--GIEPSTV-VKCT 187 Query: 186 EKKVRILRPG 195 E + I+R G Sbjct: 188 ENEPEIVRQG 197 >gi|154489839|ref|ZP_02030100.1| hypothetical protein PARMER_00068 [Parabacteroides merdae ATCC 43184] gi|218258263|ref|ZP_03474665.1| hypothetical protein PRABACTJOHN_00320 [Parabacteroides johnsonii DSM 18315] gi|154089281|gb|EDN88325.1| hypothetical protein PARMER_00068 [Parabacteroides merdae ATCC 43184] gi|218225606|gb|EEC98256.1| hypothetical protein PRABACTJOHN_00320 [Parabacteroides johnsonii DSM 18315] Length = 202 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 21/189 (11%) Query: 20 DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP------LICHVSDISMVKKH 73 D GL I PT+TVY + D+ N A+ ++ ++K +NP +IC+ D+S + ++ Sbjct: 24 DGGLVIY-PTDTVYAIGCDALNVRAVEKICQLK---GVNPQKSNLSIICY--DLSNLSEY 77 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYG 132 A V + L K PG T + L T+ P N K RVP + L+ G Sbjct: 78 AKVSNAAFKLMKKNLPGAFTFI---LPTSSELPKIYKNRKEVGIRVPDNNIIRTLVRELG 134 Query: 133 HPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKKVR 190 +P+ S + + I + ++ + ++IDGG G E ST++N + Sbjct: 135 NPILTMSLHDKDEIIEYSTDPELIEEKYENLVDIVIDGGYG--GTEASTVINCTTD-DFE 191 Query: 191 ILRPGGLEI 199 I+R G E+ Sbjct: 192 IIRQGKGEL 200 >gi|254507292|ref|ZP_05119428.1| Sua5/YciO/YrdC family protein [Vibrio parahaemolyticus 16] gi|219549752|gb|EED26741.1| Sua5/YciO/YrdC family protein [Vibrio parahaemolyticus 16] Length = 111 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 3/90 (3%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + +A L+ G IA PTE V+G+ D NP AI++L E+K+RP LI + Sbjct: 2 DNFDRALNALNDGEVIAYPTEGVFGVGCDPDNPEAIQKLLELKQRPVEKGLILIAASYEQ 61 Query: 70 VKKHASVDPLS---LHLAKLFWPGPLTLVL 96 + + L+ L WPGP+T ++ Sbjct: 62 LLPYIDESQLTAQQLEQVHQTWPGPVTWIM 91 >gi|255612074|ref|XP_002539379.1| Protein yrdC, putative [Ricinus communis] gi|223506727|gb|EEF23004.1| Protein yrdC, putative [Ricinus communis] Length = 188 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/194 (25%), Positives = 89/194 (45%), Gaps = 20/194 (10%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + + KA + + G I PT+T++G+ D+ N AI++++++K+R +I + + Sbjct: 4 DEVEKALKVIQDGGIILYPTDTIWGVGCDATNTEAIKKIFKLKQRDEAKSMIILLDTENK 63 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLI 128 ++ + P + + PLTLV+ +I P A + RV F ++LI Sbjct: 64 LESYVKEVPAVAYDLIEYAENPLTLVMP--GAKNISPALIAADGSVGIRVSSHQFCQQLI 121 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE---------ST 179 + P+ SAN SG S N S I +E IIDG + L+ ST Sbjct: 122 QRLRKPIVSTSANISGSPSPQNF-----SEIAQE---IIDGVDYVVDLDQHDLSKKKPST 173 Query: 180 IVNVQCEKKVRILR 193 I+ ++ + + +R Sbjct: 174 IMRIEPDGRFEFIR 187 >gi|167626597|ref|YP_001677097.1| SUA5/YciO/YrdC family protein [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167596598|gb|ABZ86596.1| SUA5/YciO/YrdC family protein [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 204 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 51/191 (26%), Positives = 88/191 (46%), Gaps = 6/191 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++ LD +A+PT++ Y LA ++ AI ++ +I++ + D+S + Sbjct: 17 LKEIANVLDNDGVLAVPTDSGYALACRMKSKKAIDKIIKIRELDGKHNFTLSCKDLSEIS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCGFTKKLIET 130 ++A VD + + K + PGP T +L+ +T + L T + T RV + + I Sbjct: 77 EYAKVDNSAYRILKRYTPGPFTFILN--ATKKVSSLLVTKSKNTVGIRVSEHYALQAISA 134 Query: 131 -YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL I S GQ + ++ + I ++I+ G EST V E Sbjct: 135 EIGEPLVIGSFILPGQDHVVTDCSVIDDEVMNYIDVVIES--DYCGYESTTVVEMLELPY 192 Query: 190 RILRPGGLEIE 200 +ILR G EI+ Sbjct: 193 QILRQGAGEID 203 >gi|327405855|ref|YP_004346693.1| Sua5/YciO/YrdC/YwlC family protein [Fluviicola taffensis DSM 16823] gi|327321363|gb|AEA45855.1| Sua5/YciO/YrdC/YwlC family protein [Fluviicola taffensis DSM 16823] Length = 185 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 52/179 (29%), Positives = 81/179 (45%), Gaps = 22/179 (12%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 E L G I PT+T++G+ D+ N A +R+ EIK+RP I V M++K+ Sbjct: 9 EALKNGKTILYPTDTIWGIGCDATNEQACQRILEIKQRPKDKSFILLVDSFQMIEKYIPE 68 Query: 77 DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-----LIETY 131 P + PLT++ + + P A + R+ TK LI + Sbjct: 69 FPAVCYDLADLADKPLTIIYP--NAQGLAPSVLAEDGSVGIRI----TKDPICLALIRSI 122 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID----------GGISKIGLESTI 180 PL SAN SG+ TN I +S+I +++ I++ I KIGL+S+I Sbjct: 123 RLPLVSTSANISGKPFPTNFSDI-NSAIKQQVEAILELKTNEQLSTPSQIIKIGLDSSI 180 >gi|167948397|ref|ZP_02535471.1| translation factor [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 163 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/132 (32%), Positives = 55/132 (41%), Gaps = 4/132 (3%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 +A PTE+V+GL D NP A+ RL +K+RP LI SD + ++ P S L Sbjct: 8 LAYPTESVFGLGCDPLNPQAVFRLLRLKQRPVSKGLILIASDFNQLQPFIDQLP-SQQLE 66 Query: 85 KLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANR 142 + WPGP T VL T L + A L G PL SANR Sbjct: 67 PVIQSWPGPHTWVLPAAPTLPFW-LRGDHSGIAVRVTNHPLAAALCRASGRPLVSTSANR 125 Query: 143 SGQISITNVKHI 154 S N + Sbjct: 126 SNHPPARNALQV 137 >gi|315657274|ref|ZP_07910156.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315491746|gb|EFU81355.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 215 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 52/194 (26%), Positives = 88/194 (45%), Gaps = 20/194 (10%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-- 82 + +PT+TVYG+A P A+ RL K R P VS + ++ + +P + Sbjct: 29 LVMPTDTVYGIASVPFAPVAVSRLQNAKGRGEDFPPPVLVSGPAALEDLMAPEPQASASQ 88 Query: 83 ------LAKLFWPGPLTLVLDLLSTTDIHPLSTANL----KTACFRVPCGFTKKLIETYG 132 LA+ FWPG LT+++ +P +L T R P I Y Sbjct: 89 RRAARLLAERFWPGALTIIV------TANPALGWDLGQTHGTIALRQPDHPRALEILRYT 142 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192 PLA+ SAN + T++ ++ + + + +D G+S G STIV++ + R+L Sbjct: 143 GPLAVTSANLHTRPPATDIAAA-TNYFGERVSVYVDAGVSPSGHPSTIVSL-TQDSPRLL 200 Query: 193 RPGGLEIETLKRAI 206 R G + + + A+ Sbjct: 201 RQGDIPLSDILAAL 214 >gi|94676536|ref|YP_588859.1| hypothetical protein BCI_0417 [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|212277667|sp|Q1LT55|RIMN_BAUCH RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|94219686|gb|ABF13845.1| conserved hypothetical protein [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 198 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 10/133 (7%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL-HL 83 +A PTE ++GL D + A+ L +KKR LI ++ + + + L++ Sbjct: 31 VAYPTEAMFGLGCDPDSEKAVHTLLTLKKRDWQKGLILVAANYEQLANYIDDNSLNINQR 90 Query: 84 AKLF--WPGPLTLVLDLLSTTDIH---PLSTANLKTACFRVPCGFTKKLIETYGHPLAIP 138 A++F WPGP+T + +TT ST ++ + F+ + L +G P+ Sbjct: 91 ARMFSLWPGPITWTIPARTTTPCWLTGKFSTLAVRISAFKP----VRMLCLAFGKPIVST 146 Query: 139 SANRSGQISITNV 151 SAN SGQ N+ Sbjct: 147 SANVSGQSPARNI 159 >gi|238898788|ref|YP_002924470.1| predicted ribosome maturation factor [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466548|gb|ACQ68322.1| predicted ribosome maturation factor [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 189 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 35/169 (20%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL-HL 83 IA PTE+V+GL D + A+ L +K+RP LI + ++ + + + +S Sbjct: 22 IAYPTESVFGLGCDPDSQKAVNNLLLLKQRPQKKGLILIAASYQQLQPYINDEQVSAEQR 81 Query: 84 AKLF--WPGPLTLVL---------------DLLSTTDIHPL--------------STANL 112 K+F WPG LT V L HPL S+AN+ Sbjct: 82 EKIFTSWPGHLTWVFPTSIQTPFWLSGEFNSLAVRVSAHPLVRQLCSCFGKPLVSSSANM 141 Query: 113 KTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICK 161 + PC +++++ +GH L++ S N G + + ++ L+ + + Sbjct: 142 TG---QTPCRTSREVVLQFGHQLSVLSGNVGGHMKPSEIRDALTDRLIR 187 >gi|284931148|gb|ADC31086.1| Putative translation factor/ribosome maturation factor (Sua5) [Mycoplasma gallisepticum str. F] Length = 182 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 8/73 (10%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 + +PT+TV+G+ S+N ++Y+ KKR LI SD+ + D L L LA Sbjct: 23 VILPTDTVFGVICKSKN-----KIYDFKKRDLNKKLIYFCSDVEQTNIN---DKLFLDLA 74 Query: 85 KLFWPGPLTLVLD 97 FWPG LTL+ + Sbjct: 75 NRFWPGKLTLIYN 87 >gi|198433752|ref|XP_002131934.1| PREDICTED: similar to ischemia/reperfusion inducible protein isoform 2 [Ciona intestinalis] gi|198433756|ref|XP_002131919.1| PREDICTED: similar to ischemia/reperfusion inducible protein isoform 1 [Ciona intestinalis] Length = 293 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 60/229 (26%), Positives = 100/229 (43%), Gaps = 49/229 (21%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 + + + L G +A+PT+T+YG+A +++ A+ +LYEIK R + P+ V D+ Sbjct: 53 NEDVIESCVRILHRGGIVALPTDTLYGVACLAQSTEAVEKLYEIKARNPLKPVAICVGDL 112 Query: 68 ---------------SMVKKHASVDPLSLH----------LAKLFWPGPLTLVLDLLSTT 102 S+ K D L L + PGP+T+V + + Sbjct: 113 YKVCQWTRFPQGLIQSVSKTLGLEDQLDCQRPSSPGVLYGLLEDLLPGPVTIVTERSPSL 172 Query: 103 DIHPLSTANLKTAC--FRVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSI 159 + +T N KT+ RVP F K L PLA+ SAN SG+ S ++ S+ Sbjct: 173 N----NTLNPKTSLVGIRVPDHKFIKDLTNRLREPLALTSANVSGEESSLRIEDF--RSL 226 Query: 160 CKEIPLIIDGGISKIGLE------------STIVNVQCEK-KVRILRPG 195 ++ ++D G ++G ST+V + + +ILRPG Sbjct: 227 WPKLDAVVDDG--EVGTRYVNKTLQYAKEGSTVVQILNDGVSFKILRPG 273 >gi|227354900|ref|ZP_03839314.1| translation factor [Proteus mirabilis ATCC 29906] gi|227164982|gb|EEI49821.1| translation factor [Proteus mirabilis ATCC 29906] Length = 189 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/124 (32%), Positives = 57/124 (45%), Gaps = 6/124 (4%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL-HL 83 IA PTE V+G+ D + +A+ L E+K+R LI + +K + + L+ Sbjct: 22 IAYPTEAVFGVGCDPDSESAVMALLELKQRAIEKGLILIADNYEQLKPYIDDNALTQEQR 81 Query: 84 AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140 ++F WPGP+T V+ S T T + RV K L YG PL SA Sbjct: 82 ERMFASWPGPITWVIPAKSIT--PKWLTGRFSSLAVRVTDHPIVKALCVAYGKPLVSTSA 139 Query: 141 NRSG 144 N SG Sbjct: 140 NLSG 143 >gi|261340037|ref|ZP_05967895.1| Sua5/YciO/YrdC/YwlC family protein [Enterobacter cancerogenus ATCC 35316] gi|288317957|gb|EFC56895.1| Sua5/YciO/YrdC/YwlC family protein [Enterobacter cancerogenus ATCC 35316] Length = 206 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/186 (26%), Positives = 79/186 (42%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E + G I PT++ Y L + A+ R+ I++ P + D+S + Sbjct: 17 INQAVEIVRKGGVIVYPTDSGYALGCKIEDKGAMERICRIRQLPDGHNFTLMCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD ++ L K PG T +L T ++ L KT RVP + L+E Sbjct: 77 TYAYVDNVAFRLIKNNTPGNYTFILK--GTKEVPRRLLQEKRKTIGMRVPSNPIAQALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 T G P+ S G + + + K + LII GG +G + T V E Sbjct: 135 TLGEPMLSTSLMLPGSEFTESDPEEIKDRLEKVVELIIHGGY--LGQQPTTVIDLTEDAP 192 Query: 190 RILRPG 195 ++R G Sbjct: 193 EVIREG 198 >gi|78484365|ref|YP_390290.1| SUA5/yciO/yrdC-like [Thiomicrospira crunogena XCL-2] gi|123556161|sp|Q31JQ7|RIMN_THICR RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|78362651|gb|ABB40616.1| translation factor SUA5 [Thiomicrospira crunogena XCL-2] Length = 186 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 51/186 (27%), Positives = 79/186 (42%), Gaps = 14/186 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS--- 68 ++ A + + G +A PTE VYGL D N A ++L +K+RP +I S I+ Sbjct: 8 IKAAAKLITEGGVLAYPTEAVYGLGCDPLNKDAFQQLLRLKQRPLEKGVILIASSIAQIE 67 Query: 69 -MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 VK H + + P+T VL +T ++ T T RV Sbjct: 68 PFVKLHNQAWTEKVLASWQVLNQPVTWVLP--ATDNVPEWITGGRNTVAVRVTQHPDVMA 125 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP--LIIDGGISKIGLESTIVNVQ 184 L P+ SAN SG+ +T ++ + CK P I+ G + I S I Q Sbjct: 126 LCNQLNFPIVSTSANLSGEDPVTTME-----ACCKAFPALAIMQGNLMGISAPSQIWEAQ 180 Query: 185 CEKKVR 190 +K++R Sbjct: 181 TQKRLR 186 >gi|325287671|ref|YP_004263461.1| Sua5/YciO/YrdC/YwlC family protein [Cellulophaga lytica DSM 7489] gi|324323125|gb|ADY30590.1| Sua5/YciO/YrdC/YwlC family protein [Cellulophaga lytica DSM 7489] Length = 206 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/201 (24%), Positives = 89/201 (44%), Gaps = 13/201 (6%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK---RPAMNPLICHV 64 +++A++K + L G + PT+TVYGL D N A+ ++ IK A IC Sbjct: 13 NADAIKKVVDVLKKGGLVIYPTDTVYGLGCDITNTKALEKIARIKGVKLAKANFSFIC-- 70 Query: 65 SDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CG 122 +D+S + ++ +D + + K PGP T + L + P KT RVP Sbjct: 71 ADLSNLSEYVKQIDTATFKILKRALPGPYTFI---LPGNNNLPKDFKKKKTVGIRVPDNS 127 Query: 123 FTKKLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 +++ G+P+ S + + T ++ + ++IDGG ST+V Sbjct: 128 IANAMVQALGNPIVSTSIRDEDELLEYTTDPELIYEKWDNLVDIVIDGGYGD-NTASTVV 186 Query: 182 NVQCEKKVRILRPGGLEIETL 202 ++ + + I+R G I+ Sbjct: 187 DL-SDGEPEIIREGKGSIDIF 206 >gi|229592266|ref|YP_002874385.1| hypothetical protein PFLU4879 [Pseudomonas fluorescens SBW25] gi|229364132|emb|CAY51764.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25] Length = 209 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/176 (25%), Positives = 76/176 (43%), Gaps = 9/176 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E + AG + PT++ Y + + A+ R+ +++ + SD+S + Sbjct: 17 IKQAVEIIRAGGVVIYPTDSSYAIGCQIGDKGAVERVRRLRQLDDKHNFALICSDLSQLG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVP-CGFTKKL 127 A VD + L K PGP T +L+ +HP +T RVP L Sbjct: 77 LFAKVDTGTFRLLKAHTPGPYTFILNATREVPRLLLHP----KKRTIGLRVPEHPIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + G PL S G + + + K++ LIIDGG G ST++N+ Sbjct: 133 LAELGEPLMSVSLIMPGDTEPLEDPYEMRQLLEKQVDLIIDGGFGG-GKASTVINL 187 >gi|317968708|ref|ZP_07970098.1| translation factor [Synechococcus sp. CB0205] Length = 195 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 83/182 (45%), Gaps = 14/182 (7%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV-- 76 L G PT+T+ LA P L+ IK+RP P+I +D + + + Sbjct: 14 LQQGQAGVFPTDTLPALAT---RPEHASLLWTIKERPQNKPVILMGADAEQLFSNLGMTP 70 Query: 77 DPLSLHLAKLFWPGPLTLVLDLLST--TDIHPLSTANLKTACFRVP-CGFTKKLIETYGH 133 +P L L + WPG LTLV+ ++P +A RVP C ++L+ G Sbjct: 71 EPSWLRLMEQHWPGALTLVVPAEGERLEQLNPGGSA----LGLRVPACEQARELLRLSG- 125 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 PLA S NRSG+ T+ + + + + + L + + G ST++ ++ R+LR Sbjct: 126 PLATTSTNRSGEDPCTSAEEV-QARFPQLLRLAPEPWPAPSGQASTVIALEPGGGWRLLR 184 Query: 194 PG 195 G Sbjct: 185 AG 186 >gi|88798246|ref|ZP_01113832.1| hypothetical protein MED297_13347 [Reinekea sp. MED297] gi|88779022|gb|EAR10211.1| hypothetical protein MED297_13347 [Reinekea sp. MED297] Length = 206 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 51/190 (26%), Positives = 85/190 (44%), Gaps = 12/190 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAV---DSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E + G IA PT++ Y L + R AIRR+ +I ++ + L+C D+S Sbjct: 17 IKQAAEIVLQGGVIAYPTDSAYALGCLMGNKRGMDAIRRIRQIDEKHNLT-LVCR--DLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKK 126 + +A VD ++ L K PGP T +L +T ++ L +T RV Sbjct: 74 DLANYAKVDNVAFRLIKNNTPGPYTFILQ--ATREVPRKLLHPKRRTIGLRVLANNIASA 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L++ G P+ + N + + + E+ L+IDGG G E + V + Sbjct: 132 LLDAVGEPMLSSTLILPNDEDPLNDPYYIREILEHELDLVIDGGFC--GFEESTVVSLLD 189 Query: 187 KKVRILRPGG 196 ILR G Sbjct: 190 DVPEILRVGA 199 >gi|310767749|gb|ADP12699.1| conserved uncharacterized protein [Erwinia sp. Ejp617] Length = 206 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/194 (25%), Positives = 83/194 (42%), Gaps = 6/194 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E L+ G I PT++ Y L + +A+ R+ I++ + D+S + Sbjct: 17 IKQAVEMLNKGSVIVYPTDSGYALGCKLEDKSAMERICRIRQLDGNHNFTLMCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD + L K PG T +L +T ++ L + KT RVP L+E Sbjct: 77 TYAYVDNTAFRLIKNNTPGNYTFILK--ATKEVPRRLMSEKRKTIGLRVPSNPIALALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+ S G + + I K + LII GG +G + T V E Sbjct: 135 ALNEPMMSTSLMLPGNDFTESDPEAIQDEIGKLVDLIIHGGY--LGQQPTTVIDLTEVAP 192 Query: 190 RILRPGGLEIETLK 203 ++R G +I+ + Sbjct: 193 EVVREGVGDIQPFR 206 >gi|91774703|ref|YP_544459.1| SUA5/yciO/yrdC-like protein [Methylobacillus flagellatus KT] gi|123380628|sp|Q1H4G9|RIMN_METFK RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|91708690|gb|ABE48618.1| SUA5/yciO/yrdC-like protein [Methylobacillus flagellatus KT] Length = 180 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/81 (38%), Positives = 40/81 (49%), Gaps = 1/81 (1%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-AS 75 FL +G IA PTE+ +GL D N A++RL IK RP LI S ++K A Sbjct: 8 HFLRSGGVIAYPTESCFGLGCDPTNHRALKRLLRIKGRPQRKGLIVIAQHFSQLQKLIAP 67 Query: 76 VDPLSLHLAKLFWPGPLTLVL 96 V P WPGP T ++ Sbjct: 68 VTPEQKQRMFTRWPGPHTWLV 88 >gi|261378564|ref|ZP_05983137.1| protein RimN [Neisseria cinerea ATCC 14685] gi|269145118|gb|EEZ71536.1| protein RimN [Neisseria cinerea ATCC 14685] Length = 200 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 52/194 (26%), Positives = 86/194 (44%), Gaps = 19/194 (9%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I ++A RK +L G +A PTE+ YGL A+ +L +KKRP H Sbjct: 17 IIAASAQRKLRVYLKKGGLVAYPTESCYGLGCLPTLANALSKLTHLKKRPQ------HKG 70 Query: 66 DISMVKKHASVDPL----SLHLAKLF---WPGPLTLVLDLLSTTDIHP-LSTANLKTACF 117 I + + + PL S +L + WP P T + LL+ + + P L Sbjct: 71 MIVIGNQFEQLRPLLKMPSENLQNILIKEWPAPKTFL--LLAKSGVLPKLRGKRRNKLAV 128 Query: 118 RVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 RVP ++L + G PL S NR+G+ + + + + + +I G I + L Sbjct: 129 RVPDHDGARRLCQVLGMPLVSTSCNRAGKRACRTEREV-KRQFGRNV-WVIGGRIGRQKL 186 Query: 177 ESTIVNVQCEKKVR 190 S I++ + K++R Sbjct: 187 PSQIIDGETGKRLR 200 >gi|111225292|ref|YP_716086.1| putative translation factor [Frankia alni ACN14a] gi|111152824|emb|CAJ64568.1| Putative translation factor [Frankia alni ACN14a] Length = 216 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 58/215 (26%), Positives = 90/215 (41%), Gaps = 17/215 (7%) Query: 1 MQIMSITD----SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56 MQ +D + L A + G + +PT+T+YGL D+ + A+ L K R Sbjct: 1 MQRFDCSDEAERARGLDAAVAAVGRGGLVVLPTDTLYGLGADAFDRDAVAALLAAKGRGR 60 Query: 57 MNPLICHVSDISMVKKHASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK 113 P+ V S +D P L FWPG LTLV+ ++ + Sbjct: 61 NMPVPVLVG--SWRTLDGLIDRKTPQVKDLISAFWPGGLTLVVRHAAS--LRWDLGEGRG 116 Query: 114 TACFRVPCGFTKKLIETYGH--PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171 T R+P IE G P+A+ SAN SGQ T + + + +DGG Sbjct: 117 TVAVRMP--LHPVAIELLGRTGPMAVSSANISGQPPATTADEAV-DQLGGAAEVYLDGGP 173 Query: 172 SKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAI 206 + STIV+ E V ++R G + ++ L+ + Sbjct: 174 CPAAVPSTIVDCTGEVPV-VVRSGAVGLDALREVL 207 >gi|237748690|ref|ZP_04579170.1| translation factor [Oxalobacter formigenes OXCC13] gi|229380052|gb|EEO30143.1| translation factor [Oxalobacter formigenes OXCC13] Length = 208 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/185 (24%), Positives = 85/185 (45%), Gaps = 4/185 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 ++KA + + AG I +PT++ Y L + A+ R+ +I++ + L D+ V Sbjct: 18 VKKAADIIRAGGVIVLPTDSSYALVCRLDDKAAVDRIRQIRQIDERHLLTLLCRDLKEVG 77 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 +A VD S L K PG T +L S LS + KT R+P + L++ Sbjct: 78 SYAQVDNGSYRLLKSATPGAFTFIL-RASKEVPRRLSHPSRKTIGLRIPDNRIVQALLDE 136 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G PL + G+ ++ + K + ++DGG + L +T+V++ ++ Sbjct: 137 LGEPLIGTTVILPGEEDPYTEGDVIQERLEKLVDAVVDGGACGL-LPTTVVDL-TGREAE 194 Query: 191 ILRPG 195 ++R G Sbjct: 195 LVRSG 199 >gi|215430188|ref|ZP_03428107.1| hypothetical protein MtubE_05805 [Mycobacterium tuberculosis EAS054] gi|289753378|ref|ZP_06512756.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis EAS054] gi|289693965|gb|EFD61394.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis EAS054] Length = 188 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/187 (26%), Positives = 89/187 (47%), Gaps = 7/187 (3%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLSLHL 83 + +PT+TVYG+ D+ + +A+ L K R P+ V ++ S+ + L Sbjct: 1 MVMPTDTVYGIGADAFDSSAVAALLSAKGRGRDMPVGVLVGSWHTIEGLVYSMPDGAREL 60 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142 + FWPG L+LV+ + + + L A+ T R+P +L+ G P+A+ SAN Sbjct: 61 IRAFWPGALSLVV-VQAPSLQWDLGDAH-GTVMLRMPLHPVAIELLREVG-PMAVSSANI 117 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202 SG + + S + + + +D G S+ STIV++ R+LR G + E + Sbjct: 118 SGHPPPVDAEQA-RSQLGDHVAVYLDAGPSEQQAGSTIVDLTGATP-RVLRQGPVSTERI 175 Query: 203 KRAISVE 209 + V+ Sbjct: 176 AEVLGVD 182 >gi|153807484|ref|ZP_01960152.1| hypothetical protein BACCAC_01764 [Bacteroides caccae ATCC 43185] gi|149129846|gb|EDM21058.1| hypothetical protein BACCAC_01764 [Bacteroides caccae ATCC 43185] Length = 204 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 53/190 (27%), Positives = 85/190 (44%), Gaps = 13/190 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSDISMV 70 L++ + L+ G I PT+T+Y + AI R+ IK+ P N L D+S + Sbjct: 15 LQRIIDILNDGGLIIYPTDTMYAIGCHGLKERAIERICRIKEIDPRKNNLSIICYDLSSI 74 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129 ++A VD L K PGP T + L+ T+ P N K R+P +++ Sbjct: 75 SEYAKVDNNVFKLMKHNLPGPFTFI---LNGTNRLPKIFRNRKEVGIRMPNNNIIREIAR 131 Query: 130 TYGHPL---AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC- 185 P+ +P IT+ ++ + L+IDGGI G+E + V V+C Sbjct: 132 LLDAPIMTTTLPYDEDEDLEYITD-PELIDEKFGDIVDLVIDGGIG--GIEPSTV-VKCT 187 Query: 186 EKKVRILRPG 195 E + I+R G Sbjct: 188 EDEPEIVRQG 197 >gi|171322306|ref|ZP_02911138.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia ambifaria MEX-5] gi|172061054|ref|YP_001808706.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia ambifaria MC40-6] gi|171092368|gb|EDT37729.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia ambifaria MEX-5] gi|171993571|gb|ACB64490.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia ambifaria MC40-6] Length = 210 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 73/161 (45%), Gaps = 4/161 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A + + G IA+PT++ Y LA + A+ R+ I+ L V D+S + Sbjct: 17 IKQAADIVSKGGVIAMPTDSSYALACHLDDKDAVERVRRIRGLDDKQHLSLLVRDLSELA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129 A VD K PGP +L +T ++ LS + KT RVP T L+E Sbjct: 77 NFAMVDNRQYRQIKSVTPGPYVFILQ--ATKEVPRRLSHPSRKTIGLRVPDHAITLALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 + G PL + N + + + K++ L+IDGG Sbjct: 135 SLGQPLLGTTLILPPDDEPLNDPEDIRARLEKQVDLVIDGG 175 >gi|188533748|ref|YP_001907545.1| hypothetical protein ETA_16060 [Erwinia tasmaniensis Et1/99] gi|188028790|emb|CAO96652.1| Conserved hypothetical protein [Erwinia tasmaniensis Et1/99] Length = 206 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 48/194 (24%), Positives = 82/194 (42%), Gaps = 6/194 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E L+ G I PT++ Y L + A+ R+ I+K + D+S + Sbjct: 17 IKQAVEMLNKGSVIVYPTDSGYALGCKLEDKNALERICRIRKLDGNHNFTLMCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD + L K PG T +L +T ++ L + KT RVP L+E Sbjct: 77 TYAYVDNTAFRLIKNNTPGNYTFILK--ATKEVPRRLMSEKRKTIGLRVPSNPIALALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+ S G + + + K + LII GG +G + T V E Sbjct: 135 ALNEPMMSTSLILPGNDFTESDPEAIQDELGKLVDLIIHGGY--LGQQPTTVIDLTEDAP 192 Query: 190 RILRPGGLEIETLK 203 ++R G +++ + Sbjct: 193 EVVREGVGDVQPFR 206 >gi|37528509|ref|NP_931854.1| putative ribosome maturation factor [Photorhabdus luminescens subsp. laumondii TTO1] gi|81418038|sp|Q7MYI5|RIMN_PHOLL RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|36787947|emb|CAE17064.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 189 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/145 (31%), Positives = 59/145 (40%), Gaps = 6/145 (4%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 MS S A L A IA PTE V+GL D + A+ L +KKRP LI Sbjct: 1 MSNEASPAFESVLTALKAEKVIAYPTEAVFGLGCDPDSEKAVNELLILKKRPWQKGLILI 60 Query: 64 VSDISMVKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 + ++ + L+ K WPGP+T V+ + T T RV Sbjct: 61 ADNYEQLQPYLDDKLLTEEQKKAMFACWPGPVTWVIP--AKFSAPKWLTGQFATLAVRVS 118 Query: 121 CG-FTKKLIETYGHPLAIPSANRSG 144 K+L YG PL SAN +G Sbjct: 119 DHPLVKQLCTFYGKPLVSTSANLNG 143 >gi|322833322|ref|YP_004213349.1| Sua5/YciO/YrdC/YwlC family protein [Rahnella sp. Y9602] gi|321168523|gb|ADW74222.1| Sua5/YciO/YrdC/YwlC family protein [Rahnella sp. Y9602] Length = 206 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/187 (26%), Positives = 78/187 (41%), Gaps = 6/187 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E L G I PT++ Y L A+ R+ I++ + + D+S + Sbjct: 17 INQAVELLRKGQVIVYPTDSGYALGCRLEEKNAMERICRIRQLDSNHNFTLVCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD + L K PG T +L +T ++ L + KT RVP L+E Sbjct: 77 TYAYVDNAAFRLMKNNTPGNYTFILK--ATKEVPRRLMSEKRKTIGLRVPSNPIAIALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL + G + + + K + L+IDGG IG + T V E Sbjct: 135 ALGEPLMSTTLMLPGNDFAESDPEDIKDHLGKVVDLVIDGG--SIGQQPTTVVDLTEAAP 192 Query: 190 RILRPGG 196 ++R G Sbjct: 193 EVVREGA 199 >gi|260171739|ref|ZP_05758151.1| hypothetical protein BacD2_07728 [Bacteroides sp. D2] gi|315920051|ref|ZP_07916291.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313693926|gb|EFS30761.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 204 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 51/190 (26%), Positives = 86/190 (45%), Gaps = 13/190 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSDISMV 70 L++ + L+ G I PT+T+Y + AI R+ IK+ P N L D+S + Sbjct: 15 LQRIIDILNDGGLIIYPTDTMYAIGCHGLKERAIERICRIKEIDPRKNNLSIICYDLSNI 74 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129 ++A VD L K PGP T + L+ T+ P N K R+P +++ Sbjct: 75 SEYAKVDNNVFKLMKHNLPGPFTFI---LNGTNRLPKIFRNRKEVGIRMPDNNIIREIAR 131 Query: 130 TYGHPL---AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC- 185 P+ +P +T+ ++ + L+IDGGI G+E + V V+C Sbjct: 132 LLDAPIMTTTLPYEEHEDLEYMTD-PELIDEKFGDIVDLVIDGGIG--GIEPSTV-VKCT 187 Query: 186 EKKVRILRPG 195 + ++ I+R G Sbjct: 188 DDELEIIRQG 197 >gi|257094541|ref|YP_003168182.1| Sua5/YciO/YrdC/YwlC family protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047065|gb|ACV36253.1| Sua5/YciO/YrdC/YwlC family protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 208 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 51/188 (27%), Positives = 80/188 (42%), Gaps = 14/188 (7%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 Q +SI N L++A E + G IA+PT++ Y L + A+ R+ ++ Sbjct: 3 QYLSIHPENPQARLLQRAAEVIGQGGVIALPTDSSYALGCQLGDKAAVERIRSLRGVDDR 62 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLD---LLSTTDIHPLSTANLKT 114 + L D+S + + A VD L K PG T +L+ L +HP KT Sbjct: 63 HHLTLMCRDLSQIGQFARVDNARYRLLKATTPGSYTFILEGTRELPRRVLHP----KRKT 118 Query: 115 ACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173 RVP T L+ G PL + +G + + ++ LI+DGG + Sbjct: 119 IGLRVPAHVVTLALLAQLGEPLLTSTLIVAGDDEPLTEAWEIRDRLDAQLELILDGG--R 176 Query: 174 IGLESTIV 181 G+E T V Sbjct: 177 CGVEPTSV 184 >gi|332879949|ref|ZP_08447634.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332682160|gb|EGJ55072.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 208 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/197 (24%), Positives = 85/197 (43%), Gaps = 13/197 (6%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK---RPAMNPLICHVSDISMV 70 K E L G I PT+TVYGL D N A+ ++ IK A +C SD+ + Sbjct: 19 KIVEVLRNGGLIIYPTDTVYGLGCDITNTKALEKIARIKGVKLEKANFSFVC--SDLKNL 76 Query: 71 KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLI 128 + +D + L K PG T + + + P KT RVP + ++ Sbjct: 77 SDYVKQIDSSTFKLLKRALPGAYTFI---MQGNNNLPKDFKKKKTVGIRVPDNLIARTIV 133 Query: 129 ETYGHPLAIPS-ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 E G+P+ S + I T ++ + ++IDGG ST++++ ++ Sbjct: 134 ERLGNPIVSTSIYDEDDVIEYTTDPELIFEKWQNLVDIVIDGGYGD-NTASTVIDLSGDE 192 Query: 188 KVRILRPGGLEIETLKR 204 V ++R G +++ + R Sbjct: 193 PV-VIREGKGDVDIISR 208 >gi|323700777|ref|ZP_08112689.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio sp. ND132] gi|323460709|gb|EGB16574.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio desulfuricans ND132] Length = 203 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 52/197 (26%), Positives = 85/197 (43%), Gaps = 12/197 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++ + L +G + PTET+Y L D+ + A R+ E+K R PL + + M+ Sbjct: 1 MQELLKVLRSGGIVIYPTETLYALGCDATSEAACNRVAEVKGRSEERPLPLIIGGMDMLD 60 Query: 72 KHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130 S L LA FWPGPL++++ L LS T+ F +L Sbjct: 61 LVTGEKTRSLLDLAGAFWPGPLSILVKALPDLPAW-LSDDEGYTSVRWSGHPFASELSRR 119 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG-----ISKIGLESTIVNVQC 185 + P+ SAN SG+ L I + ++DG + ST+V + Sbjct: 120 FRKPIVATSANLSGKPPAA-----LPEDIDPALLEMVDGSYFDPPWPRGHKASTVVRLLG 174 Query: 186 EKKVRILRPGGLEIETL 202 K+ I+R G + I+ L Sbjct: 175 SSKLEIIREGEISIKKL 191 >gi|298346219|ref|YP_003718906.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus curtisii ATCC 43063] gi|304390018|ref|ZP_07371972.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|298236280|gb|ADI67412.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus curtisii ATCC 43063] gi|304326500|gb|EFL93744.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 215 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 52/194 (26%), Positives = 87/194 (44%), Gaps = 20/194 (10%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-- 82 + +PT+TVYG+A P A+ RL K R P VS + ++ + +P + Sbjct: 29 LVMPTDTVYGIASVPFAPVAVSRLQNAKGRGEDFPPPVLVSGPAALEDLMAPEPQASASQ 88 Query: 83 ------LAKLFWPGPLTLVLDLLSTTDIHPLSTANL----KTACFRVPCGFTKKLIETYG 132 LA+ FWPG LT+++ +P +L T R P I Y Sbjct: 89 RRAARLLAERFWPGALTIIV------TANPALGWDLGQTHGTIALRQPDHPRALEILRYT 142 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192 PLA+ SAN + T++ ++ + + + +D G+S G STIV + + R+L Sbjct: 143 GPLAVTSANLHTRPPATDIAAA-TNYFGERVSVYVDAGVSPSGHPSTIVRL-TQDSPRLL 200 Query: 193 RPGGLEIETLKRAI 206 R G + + + A+ Sbjct: 201 RQGDIPLSDILAAL 214 >gi|330469857|ref|YP_004407600.1| sua5/ycio/yrdc/ywlc family protein [Verrucosispora maris AB-18-032] gi|328812828|gb|AEB47000.1| sua5/ycio/yrdc/ywlc family protein [Verrucosispora maris AB-18-032] Length = 214 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/206 (23%), Positives = 94/206 (45%), Gaps = 11/206 (5%) Query: 5 SITDSN-ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 S+ D + + A E + G + +PT+TVYG+ D+ P A+R L + K P P + Sbjct: 7 SMADRDRGIAAAIEAVRNGELVVLPTDTVYGIGADAFTPYAVRALLDAKDAPHSPPPVLI 66 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 S ++ S+ + L + FWPG LT+++ + + + R+P Sbjct: 67 GSRHTLDGLVFSLPTAARDLVEAFWPGALTILVQ--HSASLRWDLGDDSGVVAVRMPLHP 124 Query: 124 TKKLIETYGHPLAIPSANRSGQ---ISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 + P+A+ SAN+ GQ ++ + L S+ ++ G + + STI Sbjct: 125 VALEVLRETGPMAVASANKFGQQPALTADEARDQLGYSVRA----YLEAGPAVDPVPSTI 180 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAI 206 V++ + V ++R GG+ + L+ + Sbjct: 181 VDLTGDVPV-LVREGGIGLAKLREVV 205 >gi|31544343|ref|NP_852921.1| Putative translation factor/ribosome maturation factor [Mycoplasma gallisepticum str. R(low)] gi|31541187|gb|AAP56489.1| Putative translation factor/ribosome maturation factor (Sua5) [Mycoplasma gallisepticum str. R(low)] gi|284930383|gb|ADC30322.1| Putative translation factor/ribosome maturation factor (Sua5) [Mycoplasma gallisepticum str. R(high)] Length = 182 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 8/73 (10%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 + +PT+TV+G+ S+N ++Y+ KKR LI SD+ + D L L LA Sbjct: 23 VILPTDTVFGVICKSKN-----KIYDFKKRDLNKKLIYFCSDVEQTNIN---DKLFLDLA 74 Query: 85 KLFWPGPLTLVLD 97 FWPG LTL+ + Sbjct: 75 NRFWPGKLTLIYN 87 >gi|16329324|ref|NP_440052.1| hypothetical protein sll0216 [Synechocystis sp. PCC 6803] gi|1651805|dbj|BAA16732.1| sll0216 [Synechocystis sp. PCC 6803] Length = 210 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 51/191 (26%), Positives = 92/191 (48%), Gaps = 7/191 (3%) Query: 16 CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75 C+ L G + PT+TVY + D + A++R+ ++K+ PL S +S + ++A Sbjct: 21 CKSLRQGAIMLYPTDTVYAIGCDLNDKNAVQRVRQLKQLSNNKPLTFLCSSLSNIAEYAV 80 Query: 76 VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA-NLKTACFRVPCG-FTKKLIETYGH 133 V + L + PGP T +L +T + L KT RVP ++++++ G+ Sbjct: 81 VADDAYRLMRKLIPGPYTFLLP--ATKQVPKLVVEPKRKTTGIRVPDRPICQEILQSLGN 138 Query: 134 PLAIPSANRSGQIS-ITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192 P+ SA+ Q + K L K + +IID S+I++ +K+ +++ Sbjct: 139 PIISTSAHLPDQDEFVMAEKAKLFDLFDKLVDIIIDDDREPGYQTSSIIDF-TDKEPKVV 197 Query: 193 RPGGLEIETLK 203 R GL ETL+ Sbjct: 198 R-EGLGWETLR 207 >gi|290477158|ref|YP_003470073.1| putative RNA-binding protein with unique protein fold, with YrdC/RibB domain [Xenorhabdus bovienii SS-2004] gi|289176506|emb|CBJ83315.1| putative RNA-binding protein with unique protein fold, with YrdC/RibB domain [Xenorhabdus bovienii SS-2004] Length = 189 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/124 (31%), Positives = 52/124 (41%), Gaps = 6/124 (4%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC---HVSDISMVKKHASVDPLSL 81 IA PTE V+GL D + A+ L +K RP LI + + ++ + Sbjct: 22 IAYPTEAVFGLGCDPDSEKAVNELLSLKNRPWEKGLILIADSYERLCLYIDDEQLNDIQK 81 Query: 82 HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140 FWPGP+T V+ +TT T T RV K+L YG L SA Sbjct: 82 ETVFSFWPGPVTWVIPAKTTT--PKWLTGQFSTLAVRVTDHPLVKQLCSFYGKALVSTSA 139 Query: 141 NRSG 144 N SG Sbjct: 140 NLSG 143 >gi|85060221|ref|YP_455923.1| hypothetical protein SG2243 [Sodalis glossinidius str. 'morsitans'] gi|123518722|sp|Q2NQQ7|RIMN_SODGM RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|84780741|dbj|BAE75518.1| conserved hypothetical protein [Sodalis glossinidius str. 'morsitans'] Length = 190 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 8/126 (6%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLSLHL 83 IA PTE V+GL + + +A++ L +K+RP LI + + +K++ Sbjct: 23 IAYPTEAVFGLGCNPDSESAVQALLALKQRPWQKGLILVAAHYAQLKEYIDDDALDDAAR 82 Query: 84 AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF--TKKLIETYGHPLAIPS 139 +++F WPGP+T V+ + TT T + RV F ++L +G PL S Sbjct: 83 SRIFASWPGPVTWVIPVCPTTP--SWLTGQHASLAVRV-SAFEPVRRLCLAFGKPLVSTS 139 Query: 140 ANRSGQ 145 AN +GQ Sbjct: 140 ANLTGQ 145 >gi|121997386|ref|YP_001002173.1| Sua5/YciO/YrdC/YwlC family protein [Halorhodospira halophila SL1] gi|121588791|gb|ABM61371.1| translation factor SUA5 [Halorhodospira halophila SL1] Length = 208 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 84/186 (45%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + L G IA PT++ Y L + A+ R+ EI++ + D+ + Sbjct: 17 INQAVQILADGGVIAYPTDSSYALGCRLGDKAALDRIREIRRLDNSHNFTMACKDLKDIG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A ++ + L K PGP T + L +T+++ L KT RVP ++ L+ Sbjct: 77 TYAKMENYAYRLLKSHTPGPYTFI--LRATSEVPRRLQHPKRKTIGIRVPDHPASRALLN 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 T G PL + G N + I K I ++ GG + G+ ST++++ E Sbjct: 135 TLGEPLMSVTLQMPGDDMPLNDPEAIQERIGKLIDAVVAGGPTGGGV-STVIDLTGE-AA 192 Query: 190 RILRPG 195 ++R G Sbjct: 193 EVIREG 198 >gi|312962721|ref|ZP_07777210.1| SUA5/YciO/YrdC/YwlC family protein [Pseudomonas fluorescens WH6] gi|311283096|gb|EFQ61688.1| SUA5/YciO/YrdC/YwlC family protein [Pseudomonas fluorescens WH6] Length = 222 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/176 (25%), Positives = 76/176 (43%), Gaps = 9/176 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E + AG + PT++ Y + + A+ R+ +++ + SD+S + Sbjct: 30 IKQAVEIIRAGGVVIYPTDSSYAIGCQIGDKGAVERVRRLRQLDDKHNFALICSDLSQLG 89 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVP-CGFTKKL 127 A VD + L K PGP T +L+ +HP +T RVP L Sbjct: 90 LFAKVDTGTFRLLKAHTPGPYTFILNATREVPRLLLHP----KKRTIGLRVPEHPIALAL 145 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + G PL S G + + + K++ LIIDGG G ST++N+ Sbjct: 146 LAELGEPLMSVSLIMPGDTEPLEDPYEMRQLLEKQVDLIIDGGFGG-GKASTVINL 200 >gi|291565855|dbj|BAI88127.1| putative translation factor (SUA5) [Arthrospira platensis NIES-39] Length = 203 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 52/185 (28%), Positives = 84/185 (45%), Gaps = 21/185 (11%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL--- 81 I PT+TV LA P +++ K+RP PLI + + + L Sbjct: 20 ITFPTDTVPALAA---RPDKAEAIFQTKQRPPDKPLILMGATAESLWQFVDSQTWELECW 76 Query: 82 -HLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVP-CGFTKKLIETYGHPLAIP 138 +A+ +WPG LTLVL +++ + P ++ + T RVP C ++++ G PLA Sbjct: 77 QQIARQYWPGALTLVLP--ASSAVPPAVNPTDPTTIGLRVPKCEIALEILKRTG-PLATT 133 Query: 139 SANRSGQISITNVKHILSSSICKEIPLII----DGGISKIGLESTIVNVQCEKKVRILRP 194 SAN SGQ + V + I ++ P ++ S + ST+V ILR Sbjct: 134 SANLSGQPPLLTV-----ADIDRQFPEVLSLKESPPESGSAIPSTVVRWTKNGDWEILRS 188 Query: 195 GGLEI 199 G +E+ Sbjct: 189 GAVEL 193 >gi|295086691|emb|CBK68214.1| translation factor SUA5 [Bacteroides xylanisolvens XB1A] Length = 204 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 51/190 (26%), Positives = 86/190 (45%), Gaps = 13/190 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSDISMV 70 L++ + L+ G I PT+T+Y + AI R+ IK+ P N L D+S + Sbjct: 15 LQRIIDILNDGGLIIYPTDTMYAIGCHGLKERAIERICRIKEIDPRKNNLSIICYDLSSI 74 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129 ++A VD L K PGP T + L+ T+ P N K R+P +++ Sbjct: 75 SEYAKVDNNVFKLMKHNLPGPFTFI---LNGTNRLPKIFRNRKEVGIRMPDNNIIREIAR 131 Query: 130 TYGHPL---AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC- 185 P+ +P +T+ ++ + L+IDGGI G+E + V V+C Sbjct: 132 LLDAPIMTTTLPYEEHEDLEYMTD-PELIDEKFGDIVDLVIDGGIG--GIEPSTV-VKCT 187 Query: 186 EKKVRILRPG 195 + ++ I+R G Sbjct: 188 DNELEIVRQG 197 >gi|33866507|ref|NP_898066.1| hypothetical protein SYNW1975 [Synechococcus sp. WH 8102] gi|33633285|emb|CAE08490.1| conserved hypothetical protein [Synechococcus sp. WH 8102] Length = 201 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 51/177 (28%), Positives = 83/177 (46%), Gaps = 16/177 (9%) Query: 27 IPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA--SVDPLSLHLA 84 IPT+TV GLA+ P ++ +K+RPA PLI + ++ +HA S + +A Sbjct: 26 IPTDTVPGLAI---APPHAGDIWRLKRRPADKPLILMGATAEVLLRHAQPSCRDDARWMA 82 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC--FRVP-CGFTKKLIETYGHPLAIPSAN 141 + WPG LTLV+ L N C R+P C +++L+ G PLA SAN Sbjct: 83 ERHWPGALTLVVPAHGAV----LEALNPGGTCLGLRIPNCRQSRELLHRTG-PLATSSAN 137 Query: 142 RSGQISITNVKHILSSSICKEIP-LIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197 SG+ + + ++ +P L + G ST+++ + +LR G + Sbjct: 138 PSGEPAAMTPEQ--AAVYFPNLPQLGPQPWLPPSGQASTVISWTSSGRWNVLRQGAV 192 >gi|115352187|ref|YP_774026.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia ambifaria AMMD] gi|115282175|gb|ABI87692.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia ambifaria AMMD] Length = 210 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 73/161 (45%), Gaps = 4/161 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A + + G IA+PT++ Y LA + A+ R+ I+ L V D+S + Sbjct: 17 IKQAADIVSKGGVIAMPTDSSYALACHLDDKGAVERVRRIRGLDDKQHLSLLVRDLSELA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129 A VD K PGP +L +T ++ LS + KT RVP T L+E Sbjct: 77 NFAMVDNRQYRQIKSVTPGPYVFILQ--ATKEVPRRLSHPSRKTIGLRVPDHAITLALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 + G PL + N + + + K++ L+IDGG Sbjct: 135 SLGQPLLGTTLILPPDDEPLNDPEDIRARLEKQVDLVIDGG 175 >gi|104782899|ref|YP_609397.1| hypothetical protein PSEEN3903 [Pseudomonas entomophila L48] gi|95111886|emb|CAK16610.1| conserved hypothetical protein; Sua5/YciO/YrdC/YwlC family protein [Pseudomonas entomophila L48] Length = 221 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/181 (25%), Positives = 79/181 (43%), Gaps = 11/181 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAI---RRLYEIKKRPAMNPLICHVSDIS 68 +++A E + G + PT++ Y + + AI RRL ++ K L C D+S Sbjct: 29 IKQAVEIIRKGGVVVYPTDSAYAMGCQIGDKNAIERVRRLRQLDKNHNFTLLCC---DLS 85 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKK 126 + A +D + L K PGP T +L+ +T ++ L +T RVP Sbjct: 86 QMGTFAKIDTATFRLLKAHIPGPYTFILN--ATREVPRLLMHEKRRTIGLRVPSNPIVLA 143 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+E G PL S G + + + + LIIDGG + ST++++ + Sbjct: 144 LLEELGEPLMSVSLILPGDEEPMTDPYEIRQRLEHHVDLIIDGGFGDLK-ASTVIDLSGD 202 Query: 187 K 187 + Sbjct: 203 E 203 >gi|86609790|ref|YP_478552.1| Sua5/YciO/YrdC/YwlC family protein [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558332|gb|ABD03289.1| Sua5/YciO/YrdC/YwlC family protein [Synechococcus sp. JA-2-3B'a(2-13)] Length = 237 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 6/139 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++R+ L G + PT+TVY + D+ + A+ R+ IK+ PL +S Sbjct: 14 ARSIRRIAAALREGAVMLYPTDTVYAIGCDATHKQAVERVRRIKQLSNDKPLTFLCPSLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVP-CGFTK 125 + +A V + L + PGP T LL T + P + KT RVP + Sbjct: 74 RIAHYAQVTDSAYRLMRRLIPGPFTF---LLPATKLVPKLVMEPKRKTTGIRVPDSAICQ 130 Query: 126 KLIETYGHPLAIPSANRSG 144 L+E G+P+ SA G Sbjct: 131 ALLEELGNPIVSTSAKLGG 149 >gi|332883355|gb|EGK03638.1| Sua5/YciO/YrdC/YwlC family protein [Dysgonomonas mossii DSM 22836] Length = 187 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 52/189 (27%), Positives = 92/189 (48%), Gaps = 14/189 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD-ISMV 70 ++KA E L +G I PT+T++G+ D+ N A+ R+YE+K+R LI + + I + Sbjct: 5 IKKAFEVLVSGGLILYPTDTIWGIGCDATNEEAVHRVYELKRRVDSKALITLLDNPIKLD 64 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIE 129 V ++ L +L PLT++ D ++ P A + R+ F+++L + Sbjct: 65 YYIDEVPSIAWDLIELS-EKPLTIIYD--GARNVAPNLMAEDGSLAIRITKEKFSQELCK 121 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII-----DGGISKIGLESTIVNVQ 184 + L SAN SG+ + N I S I + + I+ D SK S+I+ + Sbjct: 122 RFRKALVSTSANISGEPAPANFDDI-SEEIKQGVDYIVKYRQDDTNKSKA---SSIIKLG 177 Query: 185 CEKKVRILR 193 +V+I+R Sbjct: 178 KTGEVKIIR 186 >gi|289208889|ref|YP_003460955.1| Sua5/YciO/YrdC/YwlC family protein [Thioalkalivibrio sp. K90mix] gi|288944520|gb|ADC72219.1| Sua5/YciO/YrdC/YwlC family protein [Thioalkalivibrio sp. K90mix] Length = 204 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 77/174 (44%), Gaps = 10/174 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAV---DSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +R+ + L G IAIPT+ Y LA D IRR+ ++ + + L+C D+S Sbjct: 14 VRQVLDRLHEGTVIAIPTDACYALACLPGDKAGADRIRRIRQVDETHHLT-LLCR--DLS 70 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKK 126 + +A VD + L K PGP T +L +T ++ L +T RVP Sbjct: 71 ELGVYAKVDNTAFRLMKGLTPGPYTFILP--ATREVPRRLQHPKRRTIGLRVPDSRIVSA 128 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L+E G PL + G+ + ++ + K + ++DGG + S I Sbjct: 129 LLEELGSPLMTATLQLPGEDLPLSEPWVIDERLSKVVDEVVDGGAGTLEPTSVI 182 >gi|331017684|gb|EGH97740.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 185 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/166 (30%), Positives = 70/166 (42%), Gaps = 14/166 (8%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + S +++A + + AG IA PTE V+GL D + A+ RL IK RP LI + Sbjct: 1 MVSSWRVQQAAQNIRAGAVIAYPTEAVWGLGCDPWDEEAVYRLLAIKSRPVEKGLILIAN 60 Query: 66 DISMVKKHASVDP-LSLHLAKLFWPGPLTLVL---DLL--STTDIHPLSTANLKTA---C 116 +I P L L WPGP T ++ +LL T IH T L+ Sbjct: 61 NIRQFDFLFEDFPELWLDRMASTWPGPNTWLVPHQNLLPEWITGIH--ETVALRVTDHPT 118 Query: 117 FRVPCGFTKKLIETYGHPLAIPSAN---RSGQISITNVKHILSSSI 159 R C LI T +P P+A R Q + +L S+ Sbjct: 119 VRELCALVGPLISTSANPAGRPAARSRLRVEQYFRGQIDGVLGGSL 164 >gi|194289302|ref|YP_002005209.1| hypothetical protein RALTA_A1178 [Cupriavidus taiwanensis LMG 19424] gi|193223137|emb|CAQ69142.1| conserved hypothetical protein [Cupriavidus taiwanensis LMG 19424] Length = 207 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 73/164 (44%), Gaps = 4/164 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S L++A + L G +A+PT++ Y LA + A+ RL ++ + L D+S Sbjct: 14 SRLLKQAAQILQKGGLVALPTDSSYALACRLDDKAAVERLRRLRGIDDRHHLTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKK 126 + A VD K PGP +L+ +T ++ LS KT RVP Sbjct: 74 ELGNFARVDNRQYRWLKGATPGPYVFILE--ATKEVPRRLSHPARKTIGVRVPEHAIPLA 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 L+ G PL + G + N + + + K++ L++DGG Sbjct: 132 LLGETGEPLISATLQLPGDEAPLNDPAQIRARLEKQLDLVVDGG 175 >gi|94499321|ref|ZP_01305859.1| putative translation factor (SUA5) [Oceanobacter sp. RED65] gi|94428953|gb|EAT13925.1| putative translation factor (SUA5) [Oceanobacter sp. RED65] Length = 207 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 77/186 (41%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A + L G IPT+ Y LA ++ A+ R+ I+K + D++ + Sbjct: 17 VKQAADILKQGGLAVIPTDCAYALACHIQDKQALERVKRIRKLDDKHNFTLMCRDLTEIS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKKLIE 129 +A VD + L K PG T +LD T ++ L K RVP ++E Sbjct: 77 TYAKVDNTAYRLLKNHTPGAFTFILD--GTREVPRRLMHPKRKQIGIRVPDNAIACAIME 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL S G + + + + + L++DGG G E+T V + Sbjct: 135 ELGEPLMTTSLIMPGDTMPLSDPYDIRQMLEHAVDLVVDGGYC--GFEATTVVDMTGDEY 192 Query: 190 RILRPG 195 I R G Sbjct: 193 SITRQG 198 >gi|166363887|ref|YP_001656160.1| hypothetical protein MAE_11460 [Microcystis aeruginosa NIES-843] gi|166086260|dbj|BAG00968.1| hypothetical protein MAE_11460 [Microcystis aeruginosa NIES-843] Length = 213 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 52/192 (27%), Positives = 88/192 (45%), Gaps = 11/192 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 ++++ C L G + PT+TVY + D +A+ R+ +IK+ PL S +S + Sbjct: 16 SIQEICHALKNGAIMLYPTDTVYAIGCDLNVKSAVERVRQIKQLSNDKPLTFLCSSLSNI 75 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTAN--LKTACFRVPCG-FTKKL 127 ++A V + + + PGP T LL T + P N KT RVP + + Sbjct: 76 SEYAVVSDYAYKIMRRVIPGPYTF---LLPATKLVPKVVMNPKRKTTGIRVPDHVICRTI 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKE----IPLIIDGGISKIGLESTIVNV 183 +ET +P+ SA+ Q K + S+ + + LII+ G + STIV+ Sbjct: 133 LETLENPIISSSAHLPDQEGDFPTKGLESARLFDALDHIVDLIIEDGSAPGSEVSTIVDF 192 Query: 184 QCEKKVRILRPG 195 ++ I+R G Sbjct: 193 TGDQP-DIVRQG 203 >gi|325267209|ref|ZP_08133874.1| translation factor RimN [Kingella denitrificans ATCC 33394] gi|324981326|gb|EGC16973.1| translation factor RimN [Kingella denitrificans ATCC 33394] Length = 207 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 52/200 (26%), Positives = 80/200 (40%), Gaps = 31/200 (15%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---------- 55 I AL + +L G IA PTE+ YGL + AIRR+ +KKRP Sbjct: 24 IQSPRALWRLRAYLKRGGIIAYPTESCYGLGGLPTHAGAIRRIIRLKKRPQNKGLIVIGN 83 Query: 56 ---AMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTAN 111 + PL+C + D + + + WP P T VL T +HP L A Sbjct: 84 ELQQLQPLLCRLPDDTQQQ------------LQNIWPAPKTFVLS--CRTKVHPMLRGAR 129 Query: 112 LKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 + RVP +++ L S NR+ Q N K +++ I+ G Sbjct: 130 RRQLATRVPDHLLARQICREAKSALISTSCNRAKQKPCRNSKEA-RKRFGRQV-WILGGQ 187 Query: 171 ISKIGLESTIVNVQCEKKVR 190 + K S I++ + ++R Sbjct: 188 VGKRKNPSKIIDWSTKTQLR 207 >gi|313669306|ref|YP_004049590.1| hypothetical protein NLA_20420 [Neisseria lactamica ST-640] gi|313006768|emb|CBN88238.1| conserved hypothetical protein [Neisseria lactamica 020-06] Length = 200 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/187 (24%), Positives = 82/187 (43%), Gaps = 5/187 (2%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I ++A RK +L G +A PTE+ YGL A+ +L +KKRP +I + Sbjct: 17 IIAASAQRKLSVYLKKGGLVAYPTESCYGLGCLPTLAKALGKLAHLKKRPQHKGMIVIGN 76 Query: 66 DISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123 ++ + SL + + WP P T +L S + L R+P Sbjct: 77 QFEQLQPLLQMPSESLQAMLRKEWPAPKTFLLSAKSCV-LPELRGKQRSKLAVRIPDHAG 135 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 ++L + G PL S NR+G+ + + + +++ I+ G I + S I++ Sbjct: 136 ARRLCQALGMPLVSTSCNRAGKRACRTEREV-RRQFGRDV-WIVGGRIGRQKSPSQIIDG 193 Query: 184 QCEKKVR 190 + K++R Sbjct: 194 ETGKRLR 200 >gi|167752335|ref|ZP_02424462.1| hypothetical protein ALIPUT_00579 [Alistipes putredinis DSM 17216] gi|167660576|gb|EDS04706.1| hypothetical protein ALIPUT_00579 [Alistipes putredinis DSM 17216] Length = 192 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 67/153 (43%), Gaps = 11/153 (7%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 T A+ +A L G I PT+TV+G+ D+ N A+ R+Y +K+ ++ + Sbjct: 5 TMEQAVTEAVRILREGGVILYPTDTVWGIGCDATNAEAVERIYRLKRSENKKSMLVLCAT 64 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANL----KTACFRVPC- 121 MV ++ P + PLTL+L S ANL T R+P Sbjct: 65 PDMVVRYVHKAPGIAFEVQELATKPLTLILPGASGV------AANLIPEEGTLGVRIPDH 118 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154 F + ++ G P+ SAN SG+ + N+ I Sbjct: 119 AFCQAMLRKLGRPIVSTSANISGEDTPRNLAEI 151 >gi|332662189|ref|YP_004444977.1| Sua5/YciO/YrdC/YwlC family protein [Haliscomenobacter hydrossis DSM 1100] gi|332331003|gb|AEE48104.1| Sua5/YciO/YrdC/YwlC family protein [Haliscomenobacter hydrossis DSM 1100] Length = 205 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 54/199 (27%), Positives = 87/199 (43%), Gaps = 12/199 (6%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIR---RLYEIKKRPAMNPLICHV 64 + + + E L+ G I PT+TVYGL D N A+ RL + + AM +IC Sbjct: 11 EGRKINQVIEKLNEGGIIIYPTDTVYGLGCDINNQAAVEKICRLRRLDPKDAMLAIICK- 69 Query: 65 SDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-G 122 DIS V++ +D + L K PG T +L + + + KT R+P Sbjct: 70 -DISQVQEFTQQIDNPTFKLLKRNLPGAFTFILP--AAGSVPKMFRNRKKTIGIRIPDHN 126 Query: 123 FTKKLIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 +L+E G P+ S +I ++ K + ++ID G + ST+V Sbjct: 127 IPLQLVEGLGRPILTTSLKSDDEILEYFTDPELIYEDFQKLVDIVIDSG-NGGNTPSTVV 185 Query: 182 NVQCEKKVRILRPGGLEIE 200 + EK + +LR G +E Sbjct: 186 DCTQEKPI-VLRLGAGMLE 203 >gi|332307257|ref|YP_004435108.1| Sua5/YciO/YrdC/YwlC family protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174586|gb|AEE23840.1| Sua5/YciO/YrdC/YwlC family protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 206 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/186 (23%), Positives = 84/186 (45%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++ACE + +G + PT++ Y + + A+ ++ I++ + D+S + Sbjct: 17 IKQACELIHSGEVVVYPTDSGYSIGCHMDDKNALEQICRIRQIGKDHNFTLMCRDMSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKKLIE 129 ++A VD + + K PGP T +L +T ++ L +T RVP L+E Sbjct: 77 EYARVDNAAFRMIKNNTPGPYTFILK--ATKEVPKRLQNPKRRTIGIRVPDNAIALALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G P+ + +I + + + K++ LII GG +G + T V E + Sbjct: 135 ELGEPMMSTTLILPSEIVAESDPDEIRDKLEKQVGLIIHGGF--LGEQPTTVVDLSEGEP 192 Query: 190 RILRPG 195 I+R G Sbjct: 193 VIIRQG 198 >gi|159027852|emb|CAO87065.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 213 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 52/192 (27%), Positives = 88/192 (45%), Gaps = 11/192 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 ++++ C L G + PT+TVY + D +A+ R+ +IK+ PL S +S + Sbjct: 16 SIQEICHALKNGAIMLYPTDTVYAIGCDLNVKSAVERVRQIKQLSNDKPLTFLCSSLSNI 75 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTAN--LKTACFRVPCG-FTKKL 127 ++A V + + + PGP T LL T + P N KT RVP + + Sbjct: 76 SEYAVVSDYAYKIMRRVIPGPYTF---LLPATKLVPKVVMNPKRKTTGIRVPDHVICRTI 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHI----LSSSICKEIPLIIDGGISKIGLESTIVNV 183 +ET +P+ SA+ Q K + L ++ + LII+ G + STIV+ Sbjct: 133 LETLENPIISSSAHLPDQEGDFPTKGLETARLFDALDHVVDLIIEDGSAPGSEVSTIVDF 192 Query: 184 QCEKKVRILRPG 195 ++ I+R G Sbjct: 193 TSDQP-DIVRQG 203 >gi|304415190|ref|ZP_07395904.1| putative ribosome maturation factor [Candidatus Regiella insecticola LSR1] gi|304282960|gb|EFL91409.1| putative ribosome maturation factor [Candidatus Regiella insecticola LSR1] Length = 189 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 57/124 (45%), Gaps = 6/124 (4%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL-HL 83 IA PTE+V+GL D + A+ L +K+R LI ++ ++ + LS+ Sbjct: 22 IAYPTESVFGLGCDPNSEKAVNALLTLKQRSRQKGLILVAANYDQLQPYLDDSQLSMAQR 81 Query: 84 AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140 A +F WPG +T V+ + D T + RV ++L YG PL SA Sbjct: 82 ASVFSSWPGAITWVIP--AKRDTPDWLTGRFNSLAVRVSAHPLVRQLCTCYGKPLVSTSA 139 Query: 141 NRSG 144 N SG Sbjct: 140 NLSG 143 >gi|259908328|ref|YP_002648684.1| hypothetical protein EpC_16760 [Erwinia pyrifoliae Ep1/96] gi|224963950|emb|CAX55455.1| conserved uncharacterized protein [Erwinia pyrifoliae Ep1/96] gi|283478266|emb|CAY74182.1| Uncharacterized protein yciO [Erwinia pyrifoliae DSM 12163] Length = 206 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 48/194 (24%), Positives = 83/194 (42%), Gaps = 6/194 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E L+ G I PT++ Y L + +A+ R+ I++ + D+S + Sbjct: 17 IKQAVEMLNKGSVIVYPTDSGYALGCKLEDKSAMERICRIRQLDGNHNFTLMCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD + L K PG T +L +T ++ L + KT RVP L+E Sbjct: 77 TYAYVDNTAFRLIKNNTPGNYTFILK--ATKEVPRRLMSEKRKTIGLRVPSNPIALALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+ S G + + I K + LII GG +G + T V E Sbjct: 135 ALNEPMMSTSLMLPGNDFTESDPEAIQDEIGKLVDLIIHGGY--LGQQPTTVIDLTEVAP 192 Query: 190 RILRPGGLEIETLK 203 ++R G +++ + Sbjct: 193 EVVREGVGDVQPFR 206 >gi|160886924|ref|ZP_02067927.1| hypothetical protein BACOVA_04938 [Bacteroides ovatus ATCC 8483] gi|237721208|ref|ZP_04551689.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|293370410|ref|ZP_06616964.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides ovatus SD CMC 3f] gi|299148444|ref|ZP_07041506.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 3_1_23] gi|156107335|gb|EDO09080.1| hypothetical protein BACOVA_04938 [Bacteroides ovatus ATCC 8483] gi|229449004|gb|EEO54795.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|292634558|gb|EFF53093.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides ovatus SD CMC 3f] gi|298513205|gb|EFI37092.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 3_1_23] Length = 204 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 51/190 (26%), Positives = 86/190 (45%), Gaps = 13/190 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSDISMV 70 L++ + L+ G I PT+T+Y + AI R+ IK+ P N L D+S + Sbjct: 15 LQRIIDILNDGGLIIYPTDTMYAIGCHGLKERAIERICRIKEIDPRKNNLSIICYDLSSI 74 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129 ++A VD L K PGP T + L+ T+ P N K R+P +++ Sbjct: 75 SEYAKVDNNIFKLMKHNLPGPFTFI---LNGTNRLPKIFRNRKEVGIRMPDNNIIREIAR 131 Query: 130 TYGHPL---AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC- 185 P+ +P +T+ ++ + L+IDGGI G+E + V V+C Sbjct: 132 LLDAPIMTTTLPYEEHEDLEYMTD-PELIDEKFGDIVDLVIDGGIG--GIEPSTV-VKCT 187 Query: 186 EKKVRILRPG 195 + ++ I+R G Sbjct: 188 DDELEIIRQG 197 >gi|119487019|ref|ZP_01620891.1| Sua5/YciO/YrdC/YwlC-like protein [Lyngbya sp. PCC 8106] gi|119455948|gb|EAW37082.1| Sua5/YciO/YrdC/YwlC-like protein [Lyngbya sp. PCC 8106] Length = 248 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 53/197 (26%), Positives = 87/197 (44%), Gaps = 24/197 (12%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L +G + PT+TVY + D +A+ R+ +IK+ PL S +S + +A+V Sbjct: 52 LRSGAVMLYPTDTVYAIGCDLTVKSAVERVRQIKQLSNDKPLTFLCSSLSNISDYANVSN 111 Query: 79 LSLHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVPCG-FTKKLIETYGHPL 135 + + K PG T LL T + P + + KT RVP F LIET G+P+ Sbjct: 112 QAYRIIKRLIPGSYTF---LLPATKLVPRLVMSPKRKTTGIRVPDNHFCLALIETLGNPI 168 Query: 136 AIPSAN--------------RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 SA+ R+G + K L + K + +I+D G STI+ Sbjct: 169 ISTSAHITNEEEGQAPLAVPRTGNMG----KAELFDCLEKLVDIIVDDGSDPGYQVSTIL 224 Query: 182 NVQCEKKVRILRPGGLE 198 ++ ++ + + G E Sbjct: 225 DLTGDEPILVREGKGWE 241 >gi|158337414|ref|YP_001518589.1| hypothetical protein AM1_4293 [Acaryochloris marina MBIC11017] gi|158307655|gb|ABW29272.1| conserved hypothetical protein [Acaryochloris marina MBIC11017] Length = 194 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/136 (30%), Positives = 64/136 (47%), Gaps = 12/136 (8%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL--- 81 ++ PT+TV LA P +++ K+R PLI + M+ + D L Sbjct: 19 VSFPTDTVPALAA---RPDQASQIFAAKQRQPDKPLILMGASPEMLWPYVRKDGKELNQW 75 Query: 82 -HLAKLFWPGPLTLVLDLLSTTD--IHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIP 138 +A +WPG LTLVL ++PL+ ++ RVP ++I PLA Sbjct: 76 QQMAADYWPGALTLVLPACDRVPPAMNPLTPDSIG---IRVPNSQVAQMILQQTGPLATT 132 Query: 139 SANRSGQISITNVKHI 154 S NRSGQ ++T V+ I Sbjct: 133 SINRSGQPALTTVEAI 148 >gi|68249744|ref|YP_248856.1| hypothetical protein NTHI1369 [Haemophilus influenzae 86-028NP] gi|229844847|ref|ZP_04464985.1| putative translation factor, SUA5 [Haemophilus influenzae 6P18H1] gi|68057943|gb|AAX88196.1| putative translation factor, SUA5 [Haemophilus influenzae 86-028NP] gi|229812228|gb|EEP47919.1| putative translation factor, SUA5 [Haemophilus influenzae 6P18H1] gi|301169939|emb|CBW29543.1| conserved protein [Haemophilus influenzae 10810] Length = 207 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 54/191 (28%), Positives = 84/191 (43%), Gaps = 15/191 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E L G I PT++ Y L + A+ R+ I+K P + SD+S + Sbjct: 17 INQAVEILQKGGVIVYPTDSGYALGCMMGDKHAMDRIVAIRKLPEGHNFTLVCSDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A+V+ + L K PG T +L +T ++ L T+ KT RVP L+ Sbjct: 77 TYATVNNTAYRLIKNNTPGRYTFILT--ATKELPRRLMTSKRKTIGLRVPDNKIALDLLS 134 Query: 130 TYGHP-----LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 G P L +P+ + Q ++ L ++ LII GG +G E T V Sbjct: 135 ALGEPILSCSLMLPNEEHTTQSDPEEIRDRLE----HQVDLIIHGGY--LGQEPTTVVDL 188 Query: 185 CEKKVRILRPG 195 E+ ILR G Sbjct: 189 TEESPVILREG 199 >gi|330957382|gb|EGH57642.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 185 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/166 (30%), Positives = 69/166 (41%), Gaps = 14/166 (8%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + S +++A + + AG IA PTE V+GL D + A+ RL IK RP LI Sbjct: 1 MVSSWRVQQAAQDIRAGAVIAYPTEAVWGLGCDPWDEEAVYRLLAIKSRPVEKGLILIAD 60 Query: 66 DISMVKKHASVDP-LSLHLAKLFWPGPLTLVL---DLL--STTDIHPLSTANLKTA---C 116 +I P L L WPGP T ++ +LL T IH T L+ Sbjct: 61 NIRQFDFLFEDFPELWLDRMASTWPGPNTWLVPHQNLLPEWITGIH--ETVALRVTDHPT 118 Query: 117 FRVPCGFTKKLIETYGHPLAIPSAN---RSGQISITNVKHILSSSI 159 R C LI T +P P+A R Q + +L S+ Sbjct: 119 VRELCALVGPLISTSANPAGRPAARSRLRVEQYFRGQIDGVLGGSL 164 >gi|326335829|ref|ZP_08202008.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691973|gb|EGD33933.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 186 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 75/152 (49%), Gaps = 10/152 (6%) Query: 18 FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77 FL I PT+T++GL D+ + I R+ +IK+R I VS + M+K++ + Sbjct: 13 FLQENKVILYPTDTIWGLGCDAYSYQGIERIRQIKRRDINKNFILLVSSLGMLKQYVKI- 71 Query: 78 PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLIETYGHPLA 136 P + P +++ + + + PL+ N + FR V F ++LI+ +G P+ Sbjct: 72 PSEIVFFLKSQTRPTSVIYQEVCNSYL-PLAKDN--SLAFRIVQDEFCRELIKAFGKPII 128 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIID 168 SAN +G+ S + S I +EI ++D Sbjct: 129 STSANITGEPS-----PMTFSQISEEIKNLVD 155 >gi|261856673|ref|YP_003263956.1| SUA5/yciO/yrdC domain protein [Halothiobacillus neapolitanus c2] gi|261837142|gb|ACX96909.1| SUA5/yciO/yrdC domain protein [Halothiobacillus neapolitanus c2] Length = 185 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 42/85 (49%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 LR+ + L G IA PTE V+GL D + A+ R+ +K+R LI +++ + Sbjct: 8 LRQTGQILSQGGVIAYPTEAVFGLGCDPLDAIAVERILTLKQRDWRKGLILLAANLEQLH 67 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVL 96 S+ P L WPGP T V+ Sbjct: 68 PWISLSPEELAKISAHWPGPATWVV 92 >gi|317049802|ref|YP_004117450.1| SUA5/yciO/yrdC domain-containing protein [Pantoea sp. At-9b] gi|316951419|gb|ADU70894.1| SUA5/yciO/yrdC domain protein [Pantoea sp. At-9b] Length = 191 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 69/148 (46%), Gaps = 10/148 (6%) Query: 6 ITDSNALRKACEF----LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +T +AL + +F L IA PTE V+GL D + A+ L +K+RP LI Sbjct: 1 MTQEHALPGSLDFCIEQLQQQAVIAYPTEAVFGLGCDPDSEHAVMSLLALKQRPVEKGLI 60 Query: 62 CHVSDISMVKKHASVDPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 +D + ++ + + LS + ++F WPGP+T V+ ++ T + R Sbjct: 61 LIAADYAQLEPYVADQELSVVQRERMFASWPGPVTYVVP--ASPHTPRWLTGRFDSLAIR 118 Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQ 145 V + L +G PL SAN SG+ Sbjct: 119 VSDHPDVQALCRRFGKPLVSTSANLSGE 146 >gi|298484630|ref|ZP_07002734.1| tRNA (ANN) t(6)A37 threonylcarbamoyladenosine biosynthesis protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160854|gb|EFI01871.1| tRNA (ANN) t(6)A37 threonylcarbamoyladenosine biosynthesis protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 185 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/166 (30%), Positives = 69/166 (41%), Gaps = 14/166 (8%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + S +++A + + AG IA PTE V+GL D + A+ RL IK RP LI Sbjct: 1 MASSWRVQQAAQDIRAGAVIAYPTEAVWGLGCDPWDEEAVYRLLAIKSRPVEKGLILIAD 60 Query: 66 DISMVKKHASVDP-LSLHLAKLFWPGPLTLVL---DLL--STTDIHPLSTANLKTA---C 116 +I P L L WPGP T ++ +LL T IH T L+ Sbjct: 61 NIRQFDFLFEDFPQLWLDRMASTWPGPNTWLVPHQNLLPEWITGIH--ETVALRVTDHPT 118 Query: 117 FRVPCGFTKKLIETYGHPLAIPSAN---RSGQISITNVKHILSSSI 159 R C LI T +P P+A R Q + +L S+ Sbjct: 119 VRELCALVGPLISTSANPAGRPAARSRLRVEQYFRGQIDGVLGGSL 164 >gi|330983264|gb|EGH81367.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 189 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/165 (25%), Positives = 71/165 (43%), Gaps = 8/165 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E + AG + PT++ Y L + +AI R+ +++ + D+S + Sbjct: 28 IKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLSQLG 87 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127 A VD + K PGP T +L+ +HP +T RVP + L Sbjct: 88 LFAKVDTGAFRALKAHTPGPYTFILNATREVPRLVLHP----KRRTIGLRVPSHPIAQAL 143 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172 +E G PL S G + + + + ++ LIIDGGI Sbjct: 144 LEQLGEPLMSVSLIMPGDSVPLSDPYEMRQILEHQVDLIIDGGIG 188 >gi|213968422|ref|ZP_03396565.1| SUA5/yciO/yrdC family domain protein [Pseudomonas syringae pv. tomato T1] gi|301384290|ref|ZP_07232708.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv. tomato Max13] gi|302060148|ref|ZP_07251689.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv. tomato K40] gi|302130421|ref|ZP_07256411.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213926710|gb|EEB60262.1| SUA5/yciO/yrdC family domain protein [Pseudomonas syringae pv. tomato T1] gi|330876383|gb|EGH10532.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330965119|gb|EGH65379.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 185 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/166 (30%), Positives = 69/166 (41%), Gaps = 14/166 (8%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + S +++A + + AG IA PTE V+GL D + A+ RL IK RP LI Sbjct: 1 MVSSWRVQQAAQNIRAGAVIAYPTEAVWGLGCDPWDEEAVYRLLAIKSRPVEKGLILIAD 60 Query: 66 DISMVKKHASVDP-LSLHLAKLFWPGPLTLVL---DLL--STTDIHPLSTANLKTA---C 116 +I P L L WPGP T ++ +LL T IH T L+ Sbjct: 61 NIRQFDFLFEDFPELWLDRMASTWPGPNTWLVPHQNLLPEWITGIH--ETVALRVTDHPT 118 Query: 117 FRVPCGFTKKLIETYGHPLAIPSAN---RSGQISITNVKHILSSSI 159 R C LI T +P P+A R Q + +L S+ Sbjct: 119 VRELCALVGPLISTSANPAGRPAARSRLRVEQYFRGQIDGVLGGSL 164 >gi|66043293|ref|YP_233134.1| SUA5/yciO/yrdC, N-terminal [Pseudomonas syringae pv. syringae B728a] gi|302186431|ref|ZP_07263104.1| SUA5/yciO/yrdC, N-terminal [Pseudomonas syringae pv. syringae 642] gi|75504059|sp|Q500S6|RIMN_PSEU2 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|63254000|gb|AAY35096.1| SUA5/yciO/yrdC, N-terminal [Pseudomonas syringae pv. syringae B728a] gi|330937247|gb|EGH41263.1| SUA5/yciO/yrdC [Pseudomonas syringae pv. pisi str. 1704B] gi|330970346|gb|EGH70412.1| SUA5/yciO/yrdC [Pseudomonas syringae pv. aceris str. M302273PT] gi|330976425|gb|EGH76481.1| SUA5/yciO/yrdC [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 185 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 50/166 (30%), Positives = 69/166 (41%), Gaps = 14/166 (8%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + S +++A + + AG IA PTE V+GL D + A+ RL IK RP LI Sbjct: 1 MVSSWRVQQAAQDIRAGAVIAYPTEAVWGLGCDPWDEEAVYRLLAIKSRPVEKGLILIAD 60 Query: 66 DISMVKKHASVDP-LSLHLAKLFWPGPLTLVL---DLL--STTDIHPLSTANLKTA---C 116 +I P L L WPGP T ++ +LL T IH T L+ Sbjct: 61 NIRQFDFLFEDFPELWLDRMASTWPGPNTWLVPHQNLLPEWITGIH--ETVALRVTDHPT 118 Query: 117 FRVPCGFTKKLIETYGHPLAIPSAN---RSGQISITNVKHILSSSI 159 R C LI T +P P+A R Q + +L S+ Sbjct: 119 VRELCALVGPLISTSANPAGRPAARSRLRVEQYFRGQIDGVLGGSL 164 >gi|332993793|gb|AEF03848.1| Sua5/YciO/YrdC/YwlC family protein [Alteromonas sp. SN2] Length = 206 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 49/186 (26%), Positives = 79/186 (42%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +ACE + G + PT++ Y + + A+ +L I+ + D+S + Sbjct: 17 LNQACELIREGAVVVYPTDSGYAIGCQMEDKKALEQLCRIRDIGKDHNFTLMCRDMSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKKLIE 129 +A VD + K PG T VL +T ++ L KT RVP L+E Sbjct: 77 IYAKVDNTAFRQIKNNTPGSYTFVLK--ATREVPKRLQNPKRKTIGIRVPDNAIALALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 T G PL S G + ++ ++ K++ +II GG +G + T V E Sbjct: 135 TLGEPLMSTSLILPGNTMAESDPDVIRDNLEKQVGVIIHGGY--LGEQPTTVIDLSEDTP 192 Query: 190 RILRPG 195 I+R G Sbjct: 193 VIMRRG 198 >gi|218659203|ref|ZP_03515133.1| Sua5/YciO/YrdC family protein [Rhizobium etli IE4771] Length = 127 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 11/122 (9%) Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194 +A PSANRSG+++ T ++ + I I++ I GLESTI+++ ILR Sbjct: 1 MAAPSANRSGKVTSTRFVEVVRQ-LDGRISGIVEEDICDHGLESTILSLVGSPI--ILRH 57 Query: 195 GGLEIETLKRAISVELEYCVDETSTPQ---SPGMLKSHYAPRSQVRLRAIHVNPREALIR 251 G + E L+ + +DE + PQ +PG LKSHYAP + V++ + Sbjct: 58 GSVPREALEALLGP-----IDEDTGPQKVSAPGQLKSHYAPEAAVQMNVDRPAANMVWVG 112 Query: 252 FG 253 FG Sbjct: 113 FG 114 >gi|145635047|ref|ZP_01790753.1| putative translation factor, SUA5 [Haemophilus influenzae PittAA] gi|145267655|gb|EDK07653.1| putative translation factor, SUA5 [Haemophilus influenzae PittAA] Length = 207 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 54/191 (28%), Positives = 85/191 (44%), Gaps = 15/191 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E L G I PT++ Y L + A+ R+ I+K P + SD+S + Sbjct: 17 INQAVEILQKGGVIVYPTDSGYALGCMMGDKHAMDRIIAIRKLPEGHNFTLVCSDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A+V+ ++ L K PG T +L +T ++ L T+ KT RVP L+ Sbjct: 77 TYATVNNIAYRLIKNNTPGRYTFILT--ATKELPRRLMTSKRKTIGLRVPDNKIALDLLS 134 Query: 130 TYGHP-----LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 G P L +P+ + Q ++ L ++ LII GG +G E T V Sbjct: 135 ALGEPILSCSLMLPNEEHTTQSDPEEIRDRLE----HQVDLIIHGGY--LGQEPTTVVDL 188 Query: 185 CEKKVRILRPG 195 E+ ILR G Sbjct: 189 TEELPVILREG 199 >gi|237801643|ref|ZP_04590104.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024502|gb|EGI04558.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 185 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 50/166 (30%), Positives = 69/166 (41%), Gaps = 14/166 (8%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + S +++A + + AG IA PTE V+GL D + A+ RL IK RP LI Sbjct: 1 MVSSWRVQQAAQDIRAGAVIAYPTEAVWGLGCDPWDEEAVYRLLAIKSRPVEKGLILIAD 60 Query: 66 DISMVKKHASVDP-LSLHLAKLFWPGPLTLVL---DLL--STTDIHPLSTANLKTA---C 116 +I P L L WPGP T ++ +LL T IH T L+ Sbjct: 61 NIRQFDFLFEDFPELWLDRMASTWPGPNTWLVPHQNLLPEWITGIH--ETVALRVTDHPT 118 Query: 117 FRVPCGFTKKLIETYGHPLAIPSAN---RSGQISITNVKHILSSSI 159 R C LI T +P P+A R Q + +L S+ Sbjct: 119 VRELCALVGPLISTSANPAGRPAARSRLRVEQYFRGQIDGVLGGSL 164 >gi|71735048|ref|YP_272338.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|257485581|ref|ZP_05639622.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289647923|ref|ZP_06479266.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv. aesculi str. 2250] gi|123638999|sp|Q48QH8|RIMN_PSE14 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|71555601|gb|AAZ34812.1| SUA5/yciO/yrdC family domain protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|320326685|gb|EFW82730.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv. glycinea str. B076] gi|320331341|gb|EFW87284.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330867904|gb|EGH02613.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330890229|gb|EGH22890.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv. mori str. 301020] gi|330985720|gb|EGH83823.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011869|gb|EGH91925.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 185 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 50/166 (30%), Positives = 69/166 (41%), Gaps = 14/166 (8%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + S +++A + + AG IA PTE V+GL D + A+ RL IK RP LI Sbjct: 1 MVSSWRVQQAAQDIRAGAVIAYPTEAVWGLGCDPWDEEAVYRLLAIKSRPVEKGLILIAD 60 Query: 66 DISMVKKHASVDP-LSLHLAKLFWPGPLTLVL---DLL--STTDIHPLSTANLKTA---C 116 +I P L L WPGP T ++ +LL T IH T L+ Sbjct: 61 NIRQFDFLFEDFPQLWLDRMASTWPGPNTWLVPHQNLLPEWITGIH--ETVALRVTDHPT 118 Query: 117 FRVPCGFTKKLIETYGHPLAIPSAN---RSGQISITNVKHILSSSI 159 R C LI T +P P+A R Q + +L S+ Sbjct: 119 VRELCALVGPLISTSANPAGRPAARSRLRVEQYFRGQIDGVLGGSL 164 >gi|332705341|ref|ZP_08425419.1| putative translation factor SUA5 [Lyngbya majuscula 3L] gi|332355701|gb|EGJ35163.1| putative translation factor SUA5 [Lyngbya majuscula 3L] Length = 201 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 53/185 (28%), Positives = 84/185 (45%), Gaps = 16/185 (8%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD----ISMVKKHASVDPLS 80 ++ PT+TV LAV P ++E K+RP PLI + V+ ++ + Sbjct: 19 VSFPTDTVPALAV---LPHKSELVFEAKRRPQDKPLILMGASPKSLWPFVQGTSAQRSIW 75 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVPCGFTKKLIETYGHPLAIP 138 H+A +WPG LTLV L +D P ++ ++ T RVP I + PLA Sbjct: 76 EHMAVKYWPGALTLV---LPASDKVPTVMNPSDPTTIGVRVPASRIAIAILSKTGPLATT 132 Query: 139 SANRSGQISITNVK--HILSSSICKEIPLIIDG-GISKIGLESTIVNVQCEKKVRILRPG 195 SAN SG+ + + + + P ++ KIG+ ST+ ILR G Sbjct: 133 SANYSGEPPLQTMAAVEVQFPEVLTLQPAELEAIKPDKIGVPSTVAK-WTSSGWEILRAG 191 Query: 196 GLEIE 200 G+E++ Sbjct: 192 GIELD 196 >gi|297180818|gb|ADI17024.1| putative translation factor (sua5) [uncultured Vibrionales bacterium HF0010_22E23] Length = 197 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 13/165 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + E L G IA PTE V+G+ D + AI L +K+R LI S + + Sbjct: 16 VEQCVEALRRGEVIAYPTEGVFGVGCDPDDSRAIEALLAVKERRKAKGLILIASSLEQLN 75 Query: 72 KHASVDPLSLHL---AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + L + K WPGP+T V+ + + T RV + L Sbjct: 76 GYIDMSQLPDSVKEQVKASWPGPVTWVMP--KGEKVTSWVSGQFDTVAVRVSDHPDVQAL 133 Query: 128 IETYGHPLAIPSANRSGQ---ISITNVKHILSSSICKEIPLIIDG 169 + +G P+ SAN +G+ +S+ +V+ LS + + + DG Sbjct: 134 CQAFGKPITSTSANLAGEPPCMSVADVELHLS----ERVKTVFDG 174 >gi|292493439|ref|YP_003528878.1| SUA5/yciO/yrdC domain protein [Nitrosococcus halophilus Nc4] gi|291582034|gb|ADE16491.1| SUA5/yciO/yrdC domain protein [Nitrosococcus halophilus Nc4] Length = 186 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 49/191 (25%), Positives = 83/191 (43%), Gaps = 9/191 (4%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 M S +R A + G +A PTE V+GL D A+ R+ ++K R LI Sbjct: 1 MRSCPSWPVRLAARMIHGGGVVAYPTEGVFGLGCDPLQGAAVERILKLKGRSVDKGLILI 60 Query: 64 VSDISMVKKHASVDPLSLHL-AKL--FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 +D + ++ + + PL+ + A+L WPGP+T +L + D+ T RV Sbjct: 61 AADFAQLQSY--LLPLTAQIRARLEGTWPGPVTWLLP--ARADVPRWLRGRHDTLAVRVT 116 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 L + G + SANR+G+ + S+ I I+ G I + S Sbjct: 117 AHPLAACLCQRVGSAIVSTSANRAGRPPARTTLQV-RRSLGAGIDYILPGAIGRRAGPSE 175 Query: 180 IVNVQCEKKVR 190 I + + +++R Sbjct: 176 IRDGRTGQRIR 186 >gi|185178792|ref|ZP_02964588.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024454|ref|ZP_02997105.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518436|ref|ZP_03003925.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|225551267|ref|ZP_03772213.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|184209412|gb|EDU06455.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188018748|gb|EDU56788.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188998149|gb|EDU67246.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|225379082|gb|EEH01447.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 8 str. ATCC 27618] Length = 186 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 60/213 (28%), Positives = 95/213 (44%), Gaps = 35/213 (16%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+I IT+ NA+ A L A + IPT+T+ GL +++ +YEIK+R + Sbjct: 1 MKIYRITNLNAIYDA---LVANKCVLIPTDTIIGLLAKNQDV-----IYEIKRRDRNKKI 52 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 + V+D ++ + LFWPG +T++ + +S +R+P Sbjct: 53 VRFVADYKLL---GDLTVEQEQFLDLFWPGSVTVIKNGVS----------------YRMP 93 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 KLI+ G PL SAN SG+ + N + LI +IG+ ST Sbjct: 94 NSPHILKLIQKLG-PLYCSSANISGEEPVKNHNEAI-FKFGANSKLIYVEAQQQIGVPST 151 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEY 212 IV++ + VR G IE + I EL+Y Sbjct: 152 IVDIDKWEYVR----RGANIEMVDMFIK-ELKY 179 >gi|53803092|ref|YP_115232.1| Sua5/YciO/YrdC/YwlC family protein [Methylococcus capsulatus str. Bath] gi|81680872|sp|Q603G8|RIMN_METCA RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|53756853|gb|AAU91144.1| Sua5/YciO/YrdC/YwlC family protein [Methylococcus capsulatus str. Bath] Length = 186 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 3/95 (3%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 M LR A L G +A PTE VYGL D N A+R+L +K+R + LI Sbjct: 1 MGWISGFRLRLAANALRNGRIVAYPTEAVYGLGCDPFNEDAVRKLLALKRRSQIKGLILI 60 Query: 64 VSDISMVKKHASVD--PLSLHLAKLFWPGPLTLVL 96 +D+ V+ + PL + + WPGP T ++ Sbjct: 61 AADVEAVESLVDLARVPLGAEV-RAGWPGPTTWLI 94 >gi|326924468|ref|XP_003208449.1| PREDICTED: hypothetical protein LOC100546811 [Meleagris gallopavo] Length = 856 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 46/188 (24%), Positives = 86/188 (45%), Gaps = 15/188 (7%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++++++ + L G IPT+TVY L P A+ + + K++ P+ +S + Sbjct: 593 ASSVKRIADILKNGGTCGIPTDTVYVLVAACNRPDAVEKAHRSKQQAQERPMSLWISSLK 652 Query: 69 MVK--KHASVDPLSLHLAKLFWPGPLTLVL------DLLSTTDIHPLSTANLKTACFRVP 120 ++ KH PL WP P++LV+ D L D ++ R+P Sbjct: 653 QLEPAKHL-FSPLLWDFMDAAWPSPISLVIPRGKWVDFLGMKD-SAKYVGTPQSVAIRIP 710 Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 C T LI+ G P+ + SAN +G+ T+ + + + ++ ++ G S + ST Sbjct: 711 DCSVTTHLIDLVG-PIVVTSANPTGEADTTHHNQVY-AKLGDKVDAVLCDGPSPENIAST 768 Query: 180 IVNVQCEK 187 +V+ C K Sbjct: 769 VVD--CTK 774 >gi|238060788|ref|ZP_04605497.1| translation factor SUA5 [Micromonospora sp. ATCC 39149] gi|237882599|gb|EEP71427.1| translation factor SUA5 [Micromonospora sp. ATCC 39149] Length = 221 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 48/203 (23%), Positives = 92/203 (45%), Gaps = 5/203 (2%) Query: 5 SITDSN-ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 S+ D + + A E + G + +PT+TVYG+ D+ P A++ L + K P + Sbjct: 14 SLADRDRGIAAAIEAVKNGELVVLPTDTVYGIGADAFTPYAVKALSDAKGGTRQAPPVLI 73 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 S ++ ++ + L + FWPG LT+V++ + + + T R+P Sbjct: 74 GSRHTLDGLVFTLPRSARDLVEAFWPGALTIVVE--HSPSLSWDLGDDSGTVAVRMPLHP 131 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + P+A+ SAN+ GQ + + + + ++ G + STIV++ Sbjct: 132 VALEVLRETGPMAVASANKVGQPAAVTAEAA-REQLGYTVRAYLEAGPCPDPVPSTIVDL 190 Query: 184 QCEKKVRILRPGGLEIETLKRAI 206 E R+LR G + +E L+ + Sbjct: 191 TGEVP-RLLRAGAIPVEKLRDVV 212 >gi|300776648|ref|ZP_07086506.1| Sua5/YciO/YrdC/YwlC family protein [Chryseobacterium gleum ATCC 35910] gi|300502158|gb|EFK33298.1| Sua5/YciO/YrdC/YwlC family protein [Chryseobacterium gleum ATCC 35910] Length = 182 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 46/189 (24%), Positives = 85/189 (44%), Gaps = 25/189 (13%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 E L +G I PT+T++G+ D+ N A+ +++EIKKR +I V ++ V Sbjct: 6 EILKSGGTILYPTDTIWGIGCDATNIEAVNKIFEIKKREKNKSMIILVESEKRLQDLVDV 65 Query: 77 DPLSLHLAKLFWPGPLTLVLDLLSTTDIHP------LSTANLKTACFRVPCGFTKKLIET 130 ++ + L P+T+V + +P L + V F KKLI Sbjct: 66 PEMAWEIIDLS-EKPVTIVYE-------NPRGLPKELLAEDGSIGIRLVKNDFCKKLITK 117 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE------STIVNVQ 184 PL SAN SG+ S + S I +E+ ++D + + + S+++ + Sbjct: 118 LNRPLVSTSANFSGEKS-----PLKFSDISQEMIDLVDYAVEEDREKVSKYSGSSVIKIW 172 Query: 185 CEKKVRILR 193 + ++++LR Sbjct: 173 NDNRIKVLR 181 >gi|300728246|ref|ZP_07061614.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella bryantii B14] gi|299774481|gb|EFI71105.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella bryantii B14] Length = 192 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 72/153 (47%), Gaps = 6/153 (3%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV- 64 +T ++ A + G I PT+TV+G+ D+ N A+ ++Y+IKKR LIC V Sbjct: 1 MTQEEDIKNAVAVMRKGGVILYPTDTVWGIGCDATNAEAVAKVYKIKKRDDSKALICLVD 60 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPG--PLTLVLDLLSTTDIHPLSTANLKTACFRVPC- 121 SD + + + ++ L + P T++LD + + A + R+ Sbjct: 61 SDNRLQRYFRDIPNVAWDLFESISENTKPTTVILD--NANGVASNLVAEDGSLAVRITKE 118 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154 F+ +L + P+ SAN SGQ + +N + I Sbjct: 119 KFSHELCYRFQKPIVSTSANISGQPAASNYRDI 151 >gi|295133073|ref|YP_003583749.1| YrdC domain-containing protein [Zunongwangia profunda SM-A87] gi|294981088|gb|ADF51553.1| YrdC domain-containing protein [Zunongwangia profunda SM-A87] Length = 206 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 51/211 (24%), Positives = 93/211 (44%), Gaps = 17/211 (8%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK---R 54 +I+ I + N + K + L G + PT+TVYGL D N +A+ ++ +IK Sbjct: 3 EIIRIYNENPNPREITKVVKTLRNGGLVIYPTDTVYGLGCDITNNSALEKIAQIKGVKLE 62 Query: 55 PAMNPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK 113 A ICH D+S + + +D + + K PGP T + L + P K Sbjct: 63 KANFSFICH--DLSNLSDYVKQIDTSTFKILKRCLPGPYTFI---LPGNNNLPTVFKKKK 117 Query: 114 TACFRVP-CGFTKKLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGI 171 T RVP + ++ G+P+ S + I T ++ + ++IDGG Sbjct: 118 TVGIRVPDNNICRAIVAELGNPIVSTSIRDEDEVIEYTTDPELIQEKWDNLVDIVIDGGY 177 Query: 172 SKIGLESTIVNVQCEKKVRILRPGGLEIETL 202 + ST++++ ++ ++R G +E + Sbjct: 178 GD-NIPSTVIDLTTDQP-EVVREGKGSLEIM 206 >gi|285019625|ref|YP_003377336.1| translation factor (sua5) protein [Xanthomonas albilineans GPE PC73] gi|283474843|emb|CBA17342.1| putative translation factor (sua5) protein [Xanthomonas albilineans] Length = 186 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 59/139 (42%), Gaps = 6/139 (4%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 +L +A L G IA PTE V+GL D + A+ RL IK+RP LI +++ + Sbjct: 5 SLSQAVTALRQGGIIAYPTEAVWGLGCDPYDAAAVNRLLRIKQRPVEKGLIVVAAELDAL 64 Query: 71 K---KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 +++ P L WPGP T +L +T P T R+ Sbjct: 65 HPLLDLSALPPERLAAVLASWPGPHTWILP--ATAQAPPWITGTHNGIAVRISAHPLVTA 122 Query: 127 LIETYGHPLAIPSANRSGQ 145 L + L SANR G+ Sbjct: 123 LCRHWAGALVSTSANRGGE 141 >gi|302539279|ref|ZP_07291621.1| Sua5/YciO/YrdC family protein [Streptomyces sp. C] gi|302448174|gb|EFL19990.1| Sua5/YciO/YrdC family protein [Streptomyces sp. C] Length = 215 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/172 (25%), Positives = 67/172 (38%), Gaps = 12/172 (6%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 + +PT Y + D+ NP A + + E K+RP PL + D + + P + LA Sbjct: 22 VVVPTARWYMICADAANPDAYKAILEGKQRPKNKPLALVIPDQNRARDLLHFTPDAERLA 81 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSG 144 FWPG L L L D + P G L LA + N SG Sbjct: 82 AAFWPGDLALFLPWREPADAARYTVVGSPALTTHAP-GPLGDLARAVPGLLAATTVNVSG 140 Query: 145 Q---------ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I++ V+ L+ + L++DGG+ TIV+ ++ Sbjct: 141 DAGPDDRGPAITLAEVEEFLTEAGLDA--LVMDGGVCPAANHLTIVDCAGDQ 190 >gi|91070122|gb|ABE11046.1| conserved hypothetical protein [uncultured Prochlorococcus marinus clone ASNC729] Length = 193 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 57/194 (29%), Positives = 87/194 (44%), Gaps = 12/194 (6%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD----IS 68 + A + L +GLPI PT+T+ + + AI Y K+R PLI S+ I Sbjct: 7 KSALKTLKSGLPIIFPTDTLPAIGCLPKFSNAI---YTFKRRDRDKPLILMGSEPKQLID 63 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128 V + A D ++A +WPG LT+V+ ++ + T+N T RVP + + + Sbjct: 64 YVHESAKED--YENIASKYWPGALTMVIP--ASEKQTKILTSNDLTLGLRVPNLYMAQSL 119 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 PL SAN SG T V+ I +I I G + G STI+ + Sbjct: 120 MKETGPLLTSSANISGLKGSTTVEDIALDFPSLKILGPIPWG-KRSGKASTIIFWKKSGD 178 Query: 189 VRILRPGGLEIETL 202 R+LR G + + L Sbjct: 179 WRLLREGEVLVREL 192 >gi|13358171|ref|NP_078455.1| hypothetical protein UU005m [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170762116|ref|YP_001752085.1| hypothetical protein UPA3_0005 [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171920287|ref|ZP_02931643.1| conserved hypothetical protein [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|183508513|ref|ZP_02958040.1| conserved hypothetical protein [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701710|ref|ZP_02971402.1| conserved hypothetical protein [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|168827693|gb|ACA32955.1| conserved hypothetical protein [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171902700|gb|EDT48989.1| conserved hypothetical protein [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|182675949|gb|EDT87854.1| conserved hypothetical protein [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186700976|gb|EDU19258.1| conserved hypothetical protein [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 184 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 53/191 (27%), Positives = 86/191 (45%), Gaps = 30/191 (15%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+I IT+ N + A L A + IPT+T+ GL +++ +YEIK+R + Sbjct: 1 MKIYRITNLNVIYDA---LMANKCVLIPTDTIIGLLAKNQDV-----IYEIKQRDRNKKI 52 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 I V+D ++ + LFWPG +T++ + +S +R+P Sbjct: 53 IRFVADYKLL---GDLTVEQKQFLDLFWPGSVTIIKNGIS----------------YRMP 93 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + KLI+ G PL SAN SG+ I N + LI +IG+ ST Sbjct: 94 NSPYILKLIQKLG-PLYCSSANISGEEPIKNHNEAI-FKFGANSKLIYVEAQQQIGVPST 151 Query: 180 IVNVQCEKKVR 190 IV++ + +R Sbjct: 152 IVDIDKWEYIR 162 >gi|118089557|ref|XP_426272.2| PREDICTED: similar to putative transmembrane protein TA-2 [Gallus gallus] Length = 818 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 46/188 (24%), Positives = 86/188 (45%), Gaps = 15/188 (7%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++++++ + L G IPT+TVY L P A+ + + K++ P+ +S + Sbjct: 555 ASSVKRIADILKNGGTCGIPTDTVYVLVAACNRPDAVEKAHRSKRQAQERPMSLWISSLK 614 Query: 69 MVK--KHASVDPLSLHLAKLFWPGPLTLVL------DLLSTTDIHPLSTANLKTACFRVP 120 ++ KH PL WP P++LV+ D L D ++ R+P Sbjct: 615 QLEPAKHL-FSPLLWDFMDAAWPSPISLVIPRGEWVDFLGMKD-SAKYVGTPQSVAIRIP 672 Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 C T LI+ G P+ + SAN +G+ T+ + + + ++ ++ G S + ST Sbjct: 673 DCSVTTHLIDLVG-PIVVTSANPTGEADTTHHNQVY-AKLGDKVDAVLCDGPSPENIAST 730 Query: 180 IVNVQCEK 187 +V+ C K Sbjct: 731 VVD--CTK 736 >gi|254382317|ref|ZP_04997677.1| Sua5/YciO/YrdC/YwlC [Streptomyces sp. Mg1] gi|194341222|gb|EDX22188.1| Sua5/YciO/YrdC/YwlC [Streptomyces sp. Mg1] Length = 215 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 57/211 (27%), Positives = 88/211 (41%), Gaps = 31/211 (14%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 LR+A + G + +PT+T+YG+ D+ + A+ L K R P + + Sbjct: 15 TGLREAASAVRRGELVVLPTDTLYGIGADAFSAEAVGDLLAAKGRGRNMPTPVLIGSPNT 74 Query: 70 VKKHASVDPLS---LHLAKLFWPGPLTLV--------LDLLSTTDIHPLSTANLKTACFR 118 + H V S L FWPG LTLV DL T T R Sbjct: 75 L--HGLVTDFSEQAWELVDAFWPGALTLVAKHQPSLAWDLGETR----------GTVAVR 122 Query: 119 VPCGFTKKLIETYGHPLAIPSANRSGQISITN---VKHILSSSICKEIPLIIDGGISKIG 175 +P + T P+A+ SAN SG + + + +L S+ + +DGG + Sbjct: 123 MPLHPVAIELLTEVGPMAVSSANLSGHPAPEDCDAAREMLGDSVS----VYLDGGPTPGI 178 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAI 206 S+IV+V + V +LR G L E L+ + Sbjct: 179 QPSSIVDVTGKVPV-LLREGALTAEQLREVV 208 >gi|15602527|ref|NP_245599.1| hypothetical protein PM0662 [Pasteurella multocida subsp. multocida str. Pm70] gi|12720939|gb|AAK02746.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 207 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 92/188 (48%), Gaps = 9/188 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E L AG I PT++ Y L + A+ R+ +I++ P + SD+S + Sbjct: 17 INQAVEILRAGGVIVYPTDSGYALGCMIGDKHAMDRIVQIRQLPEGHNFTLVCSDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 ++ V+ ++ L K PG T +L +T ++ L T+ KT RVP L+ Sbjct: 77 TYSLVNNMAYRLIKNNTPGRYTFILT--ATKELPRRLMTSKRKTIGIRVPDNQIALALLS 134 Query: 130 TYGHPLAIPSANRSGQISITNVK-HILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEK 187 T G P+ S G+ ++T + + K++ LII GG +G E +T+V++ + Sbjct: 135 TLGEPILSCSLMLPGEENVTQSDPEEIRDRLEKQVDLIIHGGY--LGAEPTTVVDLTNDT 192 Query: 188 KVRILRPG 195 + I+R G Sbjct: 193 PI-IIREG 199 >gi|238783201|ref|ZP_04627227.1| Ribosomal modification protein RimN [Yersinia bercovieri ATCC 43970] gi|238715997|gb|EEQ07983.1| Ribosomal modification protein RimN [Yersinia bercovieri ATCC 43970] Length = 188 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 58/125 (46%), Gaps = 6/125 (4%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83 IA PTE V+GL D + A+ L +K+RP LI ++ +K + LS L Sbjct: 21 IAYPTEAVFGLGCDPDSEKAVNALLALKQRPWQKGLILIAANYEQLKPYIDDSTLSDLQR 80 Query: 84 AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140 +F WPG +T V+ + T T + + RV ++L YG PL SA Sbjct: 81 ETIFSCWPGAVTWVIPARAET--PRWLTGSFDSLAVRVSDHPLVQQLCLQYGKPLVSTSA 138 Query: 141 NRSGQ 145 N SG+ Sbjct: 139 NLSGR 143 >gi|295095682|emb|CBK84772.1| Sua5/YciO/YrdC/YwlC family protein [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 206 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 48/186 (25%), Positives = 79/186 (42%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E + G I PT++ Y L + ++ R+ I++ P + D+S + Sbjct: 17 INQAVEIVRKGGVIVYPTDSGYALGCKIEDKGSMERICRIRQLPDGHNFTLMCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD ++ L K PG T +L T ++ L KT RVP + L+E Sbjct: 77 TYAYVDNVAFRLIKNNTPGNYTFILK--GTKEVPRRLLQEKRKTIGMRVPSNPIAQALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 T G P+ S G + + + K + LII GG +G + T V E Sbjct: 135 TLGEPMLSTSLMLPGSEFTESDPEEIKDRLEKVVELIIHGGY--LGQQPTTVVDLTEDAP 192 Query: 190 RILRPG 195 ++R G Sbjct: 193 EVIREG 198 >gi|120612352|ref|YP_972030.1| Sua5/YciO/YrdC/YwlC family protein [Acidovorax citrulli AAC00-1] gi|120590816|gb|ABM34256.1| Sua5/YciO/YrdC/YwlC family protein [Acidovorax citrulli AAC00-1] Length = 211 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 72/162 (44%), Gaps = 6/162 (3%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81 G +A+PT++ Y L + A+ RL I++ + L D+S V +A VD Sbjct: 27 GAVLAVPTDSSYALVCQLDDKDAVDRLRRIRQVDEKHHLTLLCRDLSEVSNYARVDNRQY 86 Query: 82 HLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPS 139 L K PGP T +LD +T ++ +S KT RVP + L+E +G PL + Sbjct: 87 RLVKQATPGPYTFILD--ATKEVPRRVSHPQRKTIGLRVPDRKGLQLLLELHGAPLLATT 144 Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 G+ N + + +I ++D G LE T V Sbjct: 145 LIPPGETEPMNDPSEIRARFEHQIDAVVDAGACP--LEPTTV 184 >gi|330901111|gb|EGH32530.1| SUA5/yciO/yrdC [Pseudomonas syringae pv. japonica str. M301072PT] Length = 185 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 70/166 (42%), Gaps = 14/166 (8%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + +S +++A + + AG IA PTE V+GL D + A+ RL IK RP LI Sbjct: 1 MVNSWRVQQAAQDIRAGAVIAYPTEAVWGLGCDPWDEEAVYRLLAIKSRPVEKGLILIAD 60 Query: 66 DISMVKKHASVDP-LSLHLAKLFWPGPLTLVL---DLL--STTDIHPLSTANLKTA---C 116 ++ P L L WPGP T ++ +LL T IH T L+ Sbjct: 61 NMRQFDFLFEDFPELWLDRMASTWPGPNTWLVPHQNLLPEWITGIH--ETVALRVTDHPT 118 Query: 117 FRVPCGFTKKLIETYGHPLAIPSAN---RSGQISITNVKHILSSSI 159 R C LI T +P P+A R Q + +L S+ Sbjct: 119 VRELCALVGPLISTSANPAGRPAARSRLRVEQYFRGQIDGVLGGSL 164 >gi|313675808|ref|YP_004053804.1| translation factor sua5 [Marivirga tractuosa DSM 4126] gi|312942506|gb|ADR21696.1| translation factor SUA5 [Marivirga tractuosa DSM 4126] Length = 207 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 55/198 (27%), Positives = 91/198 (45%), Gaps = 12/198 (6%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSD 66 D +++ + L G I PT+T+YGL D N AI +L +K +P L D Sbjct: 14 DPRKIQQIVDLLKDGAVIIYPTDTIYGLGCDLTNRKAIDKLCWVKDIKPGKINLSFICED 73 Query: 67 ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFT 124 +S + + ++ + L K PGP T +L + +++ + AN KT R+P Sbjct: 74 MSHISDYVKNLSTPTFKLMKKNLPGPFTFILP--ANSNVPKIVNANKKTVGIRIPNNNIP 131 Query: 125 KKLIETYGHPLAIPSANRSGQI--SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 L++ G+PL S + I T+ + I S + ++IDGG ST+++ Sbjct: 132 IALVKALGNPLITTSIKDNDDIVEYPTDPEEIY-ESFKNLVDVVIDGGYGN-NNPSTVID 189 Query: 183 VQCEKK-VRILRPGGLEI 199 C K+ I+R G EI Sbjct: 190 --CTKEPAEIVREGLGEI 205 >gi|146300671|ref|YP_001195262.1| Sua5/YciO/YrdC/YwlC family protein [Flavobacterium johnsoniae UW101] gi|146155089|gb|ABQ05943.1| translation factor SUA5 [Flavobacterium johnsoniae UW101] Length = 206 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 87/198 (43%), Gaps = 13/198 (6%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK---RPAMNPLICHVSDI 67 A+ K + L G + PT+TVYGL D N A+ ++ +IK A ICH D+ Sbjct: 16 AIAKVVKVLQNGGLVIYPTDTVYGLGCDITNSRALEKIAKIKGVKLEKANFSFICH--DL 73 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125 S + + +D + + K PGP T + L + P T RVP Sbjct: 74 SNLSDYVRQIDTSTFKILKRALPGPYTFI---LPGNNNLPKEFKKKTTVGIRVPDNNIVL 130 Query: 126 KLIETYGHPLAIPSA-NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 +++ G+P+ S + I T ++ + ++IDGG + STI+++ Sbjct: 131 EIVRQLGNPIVSTSIRDEDDVIEYTTDPELIFEKWQNLVDMVIDGGYGD-NVGSTIIDL- 188 Query: 185 CEKKVRILRPGGLEIETL 202 E + ++R G +I+ L Sbjct: 189 SEHEPIVVREGKGDIDIL 206 >gi|148244943|ref|YP_001219637.1| Sua5 family translation factor [Candidatus Vesicomyosocius okutanii HA] gi|146326770|dbj|BAF61913.1| translation factor, Sua5/YciO/YrdC/YwlC family [Candidatus Vesicomyosocius okutanii HA] Length = 204 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 50/190 (26%), Positives = 83/190 (43%), Gaps = 8/190 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L + + L G I PT++ Y L N + R+ I+ + + D++ + Sbjct: 17 LEQVADELRRGAVIVYPTDSGYALGATLGNKNGLERIRCIRNLSKQHYFTLMMRDLAHIG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129 ++A +D +S L K PG T VL T D+ + L A KT FRV G + L++ Sbjct: 77 EYAKLDNISFRLLKRILPGSYTFVLQ--GTRDVPNRLLHAKKKTIGFRVSNHGLVQALLD 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+ I ++ ++ + S+ K + +IIDGG LE T V + Sbjct: 135 VLNEPI-INTSLIIKDCEFFDIDDVY-DSLEKRVDVIIDGGYCP--LEPTTVIDLSLSSI 190 Query: 190 RILRPGGLEI 199 I+R G +I Sbjct: 191 NIIRQGAGDI 200 >gi|126662056|ref|ZP_01733055.1| Sua5/YciO/YrdC/YwlC family protein [Flavobacteria bacterium BAL38] gi|126625435|gb|EAZ96124.1| Sua5/YciO/YrdC/YwlC family protein [Flavobacteria bacterium BAL38] Length = 188 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 85/181 (46%), Gaps = 5/181 (2%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK-H 73 A E + G I PT+TV+G+ D+ N AI+++Y +K+R +I ++ M+ Sbjct: 10 AFEIIKNGGIILYPTDTVWGIGCDATNEDAIKKIYALKQREESKSMIVLLNGERMMYNVF 69 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGH 133 + ++ + L P TL+LD + ++ N A V F KL+E Sbjct: 70 KDIPEVAWQILDLS-ERPTTLILDKPRNVAKNIIAEDN-TLAVRMVTEPFCFKLMERMKK 127 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKKVRIL 192 PL SAN SG + K I + I K + +++ K+ STI+ + + +V+++ Sbjct: 128 PLVSTSANVSGMFTPKTFKEI-TPEIIKGVDYVVNLHHDKVCKNPSTIIKLGLDSQVKVI 186 Query: 193 R 193 R Sbjct: 187 R 187 >gi|145633071|ref|ZP_01788803.1| hypothetical protein CGSHi3655_05899 [Haemophilus influenzae 3655] gi|144986297|gb|EDJ92876.1| hypothetical protein CGSHi3655_05899 [Haemophilus influenzae 3655] Length = 207 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 55/191 (28%), Positives = 82/191 (42%), Gaps = 15/191 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E L G I PT++ Y L + A+ R+ I+K P + SD+S + Sbjct: 17 INQAVEILQKGGVIVYPTDSGYALGCMMGDKHAMDRIVAIRKLPEGHNFTLVCSDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A V+ + L K PG T +L +T ++ L T+ KT RVP L+ Sbjct: 77 TYARVNNTAYRLIKNNTPGRYTFILT--ATKELPRRLMTSKRKTIGLRVPDNKIALDLLS 134 Query: 130 TYGHP-----LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 G P L +P + Q ++ L +I LII GG +G E T V Sbjct: 135 ALGEPILSCSLMLPGEEHTTQSDPEEIRDRLE----HQIDLIIHGGY--LGQEPTTVVDL 188 Query: 185 CEKKVRILRPG 195 E+ ILR G Sbjct: 189 TEESPVILREG 199 >gi|86133170|ref|ZP_01051752.1| YrdC protein [Polaribacter sp. MED152] gi|85820033|gb|EAQ41180.1| YrdC protein [Polaribacter sp. MED152] Length = 206 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 52/197 (26%), Positives = 86/197 (43%), Gaps = 13/197 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK---RPAMNPLICHVSDIS 68 ++KA + L G I PT+TVYGL D N A+ ++ IK A +C+ D+S Sbjct: 17 IQKAVKVLKNGGLIIYPTDTVYGLGCDITNTKALEKIALIKGIKLDKANFSFVCN--DLS 74 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126 + + +D + L K PGP T + L ++ P KT R+P + Sbjct: 75 HLSDYVKQLDSPTFKLLKRALPGPYTFI---LPGSNNLPKVFKKRKTVGIRIPDNNIART 131 Query: 127 LIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 L+E G+P+ S I T ++ + L+IDGG STI+++ Sbjct: 132 LVEALGNPIVSSSIRDDDDILEYTTDPELIYEKWNNLVDLVIDGGYGD-NQASTIIDL-T 189 Query: 186 EKKVRILRPGGLEIETL 202 + ++R G ++ L Sbjct: 190 DNVPEVIREGKGSLDVL 206 >gi|94310010|ref|YP_583220.1| Sua5/YciO/YrdC/YwlC [Cupriavidus metallidurans CH34] gi|93353862|gb|ABF07951.1| putative translation factor (SUA5) [Cupriavidus metallidurans CH34] Length = 215 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 53/194 (27%), Positives = 93/194 (47%), Gaps = 12/194 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAI---RRLYEIKKRPAMNPLICHVSDIS 68 +++A + + G IA+PT++ Y LA + A+ RRL EI ++ + L+C SD+S Sbjct: 17 VKQAAQIVRQGGLIALPTDSSYALACQIDDKAAVEQLRRLREIDEKHHLT-LMC--SDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKK 126 + A VD K PGP +L+ +T ++ LS KT RVP Sbjct: 74 ELGNFARVDNRQYRWIKGATPGPYVFILE--ATKEVPRRLSHPARKTIGVRVPEHPIPLA 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+ G PL + G + N + + + K + L+IDGG + +T++++ Sbjct: 132 LVAELGQPLISATLQLPGDDAPMNDPAEIRARLEKRLDLVIDGGPAP-AQPTTVIDLTSG 190 Query: 187 KKVRILRPGGLEIE 200 + V ++R G ++E Sbjct: 191 EPV-LVRAGRGDVE 203 >gi|148546653|ref|YP_001266755.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas putida F1] gi|148510711|gb|ABQ77571.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas putida F1] Length = 221 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 43/178 (24%), Positives = 79/178 (44%), Gaps = 5/178 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E + G + PT++ Y L + +AI R+ ++ + D+S + Sbjct: 29 IKQAVEIIRKGGVVVYPTDSAYALGCQIGDKSAIERVRRLRGLDKTHNFTLMCCDMSQLG 88 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTAN-LKTACFRVP-CGFTKKLIE 129 +A VD + L K PGP T +L+ T ++ L + +T RVP T L+ Sbjct: 89 LYAKVDTGTFRLLKAHVPGPYTFILN--GTREVPRLLLHDKRRTIGLRVPDHAITLALLA 146 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 G PL S G + + + ++ L+IDGG + STI+++ ++ Sbjct: 147 ELGEPLMSVSLILPGDSEPMTDPYEIRERLEHQVDLVIDGGFGDLK-ASTIIDLSGDE 203 >gi|282878540|ref|ZP_06287321.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella buccalis ATCC 35310] gi|281299331|gb|EFA91719.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella buccalis ATCC 35310] Length = 189 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 69/141 (48%), Gaps = 5/141 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 ++ A E + G I PT+TV+G+ D+ N A+ ++Y+IKKR LIC V + ++ Sbjct: 7 IKNAIEVMKQGGVILYPTDTVWGIGCDATNAEAVAKVYKIKKRDDSKALICLVDSDARLQ 66 Query: 72 KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 ++ P ++ L + P T++LD ++ P A + R+ F+ +L Sbjct: 67 RYVRQVPNVAWDLLDVA-VKPTTIILD--GAINLAPNLIAEDGSIALRITKEPFSHELCY 123 Query: 130 TYGHPLAIPSANRSGQISITN 150 + L SAN SG+ + N Sbjct: 124 RFQKALVSTSANVSGEPAAAN 144 >gi|289209438|ref|YP_003461504.1| SUA5/yciO/yrdC domain protein [Thioalkalivibrio sp. K90mix] gi|288945069|gb|ADC72768.1| SUA5/yciO/yrdC domain protein [Thioalkalivibrio sp. K90mix] Length = 197 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 48/136 (35%), Positives = 61/136 (44%), Gaps = 23/136 (16%) Query: 20 DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL 79 D G+ +A PTE V+GL +P I R+ EIK RPA LI V+D +D L Sbjct: 22 DGGV-VAYPTEAVFGLGCRPDDPRTIDRILEIKGRPATKGLIV-VTD--------RLDRL 71 Query: 80 SLHLAKL----------FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLI 128 + LA L WPGP T +L + T PL + RV T+ L Sbjct: 72 APWLAPLPAERRAEIDASWPGPTTWLLPV--TDACPPLLRGEHDSLAVRVTAHPETRALC 129 Query: 129 ETYGHPLAIPSANRSG 144 G PL SANR+G Sbjct: 130 AAAGSPLVSTSANRAG 145 >gi|258404937|ref|YP_003197679.1| SUA5/yciO/yrdC domain-containing protein [Desulfohalobium retbaense DSM 5692] gi|257797164|gb|ACV68101.1| SUA5/yciO/yrdC domain protein [Desulfohalobium retbaense DSM 5692] Length = 219 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 56/197 (28%), Positives = 83/197 (42%), Gaps = 26/197 (13%) Query: 28 PTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD---ISMVKKHASVDPLSLHLA 84 PTET++ + D+ NP ++ IK RP PL + ++MV S D L Sbjct: 36 PTETLFAVGGDALNPAVGEQVQAIKARPEGKPLPVLLGAPEMLAMVTAWQSRD--LQRLT 93 Query: 85 KLFWPGPLTLVL----DLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETY-----GHPL 135 FWPGPL+L++ L + H T C R +T ++ G PL Sbjct: 94 NAFWPGPLSLLVPARPGLPAAIQDHAGWT------CVR----WTSHRDASWLSRQCGQPL 143 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS-KIGLESTIVNVQCEKKVRILRP 194 SANRSG V L + + + + G S GL ST+V + + +LR Sbjct: 144 IATSANRSG-APPAAVAEQLDPEMIRSVNGVWLGHSSPDGGLPSTLVRILSGGVLEVLRQ 202 Query: 195 GGLEIETLKRAISVELE 211 G ++ L+ A V E Sbjct: 203 GAVDSRALEGAGWVVRE 219 >gi|123967880|ref|YP_001008738.1| putative translation factor (SUA5) [Prochlorococcus marinus str. AS9601] gi|123197990|gb|ABM69631.1| Putative translation factor (SUA5) [Prochlorococcus marinus str. AS9601] Length = 193 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 57/198 (28%), Positives = 85/198 (42%), Gaps = 20/198 (10%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC----HVSDIS 68 + A + L +GLPI PT+T+ + P +YE KKR PLI H I Sbjct: 7 KSALKTLKSGLPIIFPTDTLPAIGC---LPKFSNIIYEFKKRDRGKPLILMGSEHKQLID 63 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128 V + A D ++A +WPG LT+V+ ++ + T+N T R+P + K + Sbjct: 64 YVHESAKED--YENIASKYWPGALTMVVP--ASEKQTTILTSNDLTLGLRIPNSYMAKSL 119 Query: 129 ETYGHPLAIPSANRSGQISITNVKHIL----SSSICKEIPLIIDGGISKIGLESTIVNVQ 184 PL SAN SG V+ I S I IP + G STI+ + Sbjct: 120 MRETGPLLTSSANISGFKGSITVEGIALDFPSVKILGPIPW-----EKRSGKASTIIFWK 174 Query: 185 CEKKVRILRPGGLEIETL 202 R++R G + + L Sbjct: 175 KSGDWRLIREGEVLVREL 192 >gi|300723350|ref|YP_003712653.1| protein yciO [Xenorhabdus nematophila ATCC 19061] gi|297629870|emb|CBJ90488.1| Protein yciO [Xenorhabdus nematophila ATCC 19061] Length = 206 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 50/187 (26%), Positives = 84/187 (44%), Gaps = 8/187 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + ++ E L G + PT++ Y + N A+ R+ I++ + D+S + Sbjct: 17 IEQSAEVLKKGGVVIYPTDSGYAIGCCLENKDAMTRICRIRQLEGRHNFTLMCRDLSEIS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD + L K PG T +L +T ++ L KT RVP +L+E Sbjct: 77 TYAHVDNQAFRLIKNNTPGNYTFILQ--ATKEVPRRLMNEKRKTIGLRVPSNPIALELLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES-TIVNVQCEKK 188 G PL S G + + ++ K++ LII GG +G +S T+V++ + Sbjct: 135 KMGEPLMSCSLILPGNDFAESDPEEIKETLGKQVDLIIHGGY--LGQQSTTVVDLTGDSP 192 Query: 189 VRILRPG 195 V ILR G Sbjct: 193 V-ILREG 198 >gi|16273118|ref|NP_439354.1| hypothetical protein HI1198 [Haemophilus influenzae Rd KW20] gi|145639282|ref|ZP_01794888.1| hypothetical protein CGSHiII_00989 [Haemophilus influenzae PittII] gi|260581102|ref|ZP_05848923.1| conserved hypothetical protein [Haemophilus influenzae RdAW] gi|319776560|ref|YP_004139048.1| protein, putative translation factor SUA5 [Haemophilus influenzae F3047] gi|329124071|ref|ZP_08252618.1| Sua5/YciO/YrdC/YwlC family protein [Haemophilus aegyptius ATCC 11116] gi|1175684|sp|P45103|Y1198_HAEIN RecName: Full=Uncharacterized protein HI_1198 gi|1574127|gb|AAC22852.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20] gi|145271585|gb|EDK11496.1| hypothetical protein CGSHiII_00989 [Haemophilus influenzae PittII] gi|260092231|gb|EEW76173.1| conserved hypothetical protein [Haemophilus influenzae RdAW] gi|309751159|gb|ADO81143.1| Conserved hypothetical protein [Haemophilus influenzae R2866] gi|317451151|emb|CBY87384.1| conserved protein, putative translation factor SUA5 [Haemophilus influenzae F3047] gi|327467496|gb|EGF12994.1| Sua5/YciO/YrdC/YwlC family protein [Haemophilus aegyptius ATCC 11116] Length = 207 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 54/191 (28%), Positives = 83/191 (43%), Gaps = 15/191 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E L G I PT++ Y L + A+ R+ I+K P + SD+S + Sbjct: 17 INQAVEILQKGGVIVYPTDSGYALGCMMGDKHAMDRIVAIRKLPEGHNFTLVCSDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A V+ + L K PG T +L +T ++ L T+ KT RVP L+ Sbjct: 77 TYARVNNTAYRLIKNNTPGRYTFILT--ATKELPRRLMTSKRKTIGLRVPDNKIALDLLS 134 Query: 130 TYGHP-----LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 G P L +P+ + Q ++ L ++ LII GG +G E T V Sbjct: 135 ALGEPILSCSLMLPNEEHTTQSDPEEIRDRLE----HQVDLIIHGGY--LGQEPTTVVDL 188 Query: 185 CEKKVRILRPG 195 E+ ILR G Sbjct: 189 TEESPVILREG 199 >gi|319901221|ref|YP_004160949.1| translation factor SUA5 [Bacteroides helcogenes P 36-108] gi|319416252|gb|ADV43363.1| translation factor SUA5 [Bacteroides helcogenes P 36-108] Length = 204 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 50/189 (26%), Positives = 83/189 (43%), Gaps = 11/189 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSDISMV 70 L++ L+ G I PT+T+Y + + AI R+ ++K P N L D+S + Sbjct: 15 LQQIINLLNDGGIIIYPTDTMYAIGCHALKERAIERICQLKDIDPKKNNLSIICYDLSSI 74 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129 ++A VD + L K PG T +L+ TT + P N K R+P +++ Sbjct: 75 SEYAKVDNNTFKLMKRNLPGAFTFILN--GTTRL-PKIFRNRKEVGIRMPDSSIIREIAR 131 Query: 130 TYGHPLAIPS--ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 P+ + + S I +++ + LIIDGGI G E + + V C Sbjct: 132 LLDAPIMTTTLPYDDSEDIEYATDPELINEKFGNTVDLIIDGGIG--GTEGSTI-VDCTN 188 Query: 188 -KVRILRPG 195 + I+R G Sbjct: 189 GETEIVRQG 197 >gi|326318414|ref|YP_004236086.1| Sua5/YciO/YrdC/YwlC family protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375250|gb|ADX47519.1| Sua5/YciO/YrdC/YwlC family protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 211 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 72/162 (44%), Gaps = 6/162 (3%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81 G +A+PT++ Y L + A+ RL I++ + L D+S V +A VD Sbjct: 27 GAVLAVPTDSSYALVCQLDDKDAVDRLRRIRQVDEKHHLTLLCRDLSEVSNYARVDNRQY 86 Query: 82 HLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPS 139 L K PGP T +LD +T ++ +S KT RVP + L+E +G PL + Sbjct: 87 RLVKQATPGPYTFILD--ATKEVPRRVSHPQRKTIGLRVPDRKGLQLLLELHGAPLLATT 144 Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 G+ N + + +I ++D G LE T V Sbjct: 145 LIPPGETEPMNDPAEIRARFEHQIDAVVDAGACP--LEPTTV 184 >gi|226329519|ref|ZP_03805037.1| hypothetical protein PROPEN_03428 [Proteus penneri ATCC 35198] gi|225202705|gb|EEG85059.1| hypothetical protein PROPEN_03428 [Proteus penneri ATCC 35198] Length = 189 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 40/124 (32%), Positives = 56/124 (45%), Gaps = 6/124 (4%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83 IA PTE V+G+ D + A+ L +K+R LI + +K + L+ Sbjct: 22 IAYPTEAVFGVGCDPDSEQAVMALLMLKQRSIEKGLILIADNYGQLKPYIDDSALTQTQR 81 Query: 84 AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSA 140 ++F WPGP+T V+ STT T + RV K+L YG PL SA Sbjct: 82 DRMFASWPGPVTWVIPAKSTT--PKWLTGKFDSLAVRVTDHSVVKELCLAYGKPLVSTSA 139 Query: 141 NRSG 144 N SG Sbjct: 140 NLSG 143 >gi|78185423|ref|YP_377858.1| hypothetical protein Syncc9902_1857 [Synechococcus sp. CC9902] gi|78169717|gb|ABB26814.1| conserved hypothetical protein [Synechococcus sp. CC9902] Length = 202 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 48/144 (33%), Positives = 62/144 (43%), Gaps = 37/144 (25%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI----------------C 62 L A + IPT+T+ GLAV +N I + +K+RPA PLI C Sbjct: 19 LQASEAVIIPTDTLPGLAVLPQNANTI---WTLKQRPADKPLILMGATVEALLEGVDSCC 75 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 H +M KH WPG +TLVL + L+ C R+P C Sbjct: 76 HDDAKTMATKH--------------WPGAITLVLPARGIY-VDYLNPGGSNIGC-RIPAC 119 Query: 122 GFTKKLIETYGHPLAIPSANRSGQ 145 T+ L+ G PLA SAN SGQ Sbjct: 120 AITQNLLSISG-PLATSSANPSGQ 142 >gi|302869593|ref|YP_003838230.1| Sua5/YciO/YrdC/YwlC family protein [Micromonospora aurantiaca ATCC 27029] gi|315503945|ref|YP_004082832.1| sua5/ycio/yrdc/ywlc family protein [Micromonospora sp. L5] gi|302572452|gb|ADL48654.1| Sua5/YciO/YrdC/YwlC family protein [Micromonospora aurantiaca ATCC 27029] gi|315410564|gb|ADU08681.1| Sua5/YciO/YrdC/YwlC family protein [Micromonospora sp. L5] Length = 214 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 48/197 (24%), Positives = 88/197 (44%), Gaps = 14/197 (7%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A E + G + +PT+TVYG+ D+ P A++ L + K P + S ++ Sbjct: 18 AIEAVKNGELVVLPTDTVYGIGADAFTPYAVKALADTKGGARQAPPVLIGSRHTLDGLVF 77 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA-----NLKTACFRVPCGFTKKLIE 129 S+ + L + FWPG LT+V++ H S A + T R+P + Sbjct: 78 SLPGAARDLVEAFWPGALTIVVE-------HSPSLAWDLGDSSGTVAVRMPLHPVALEVL 130 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+A+ SAN+ GQ + + + + ++ G + + STIV++ + Sbjct: 131 RETGPMAVASANKIGQPAALTAEEA-RDQLGYGVRAYLEAGPAVDPVPSTIVDLTGDVP- 188 Query: 190 RILRPGGLEIETLKRAI 206 R+LR G + + L+ + Sbjct: 189 RVLREGAVTLAKLREVV 205 >gi|28867414|ref|NP_790033.1| SUA5/yciO/yrdC family domain-containing protein [Pseudomonas syringae pv. tomato str. DC3000] gi|81732976|sp|Q88B46|RIMN_PSESM RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|28850648|gb|AAO53728.1| SUA5/yciO/yrdC family domain protein [Pseudomonas syringae pv. tomato str. DC3000] Length = 185 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 50/166 (30%), Positives = 69/166 (41%), Gaps = 14/166 (8%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + S +++A + + AG IA PTE V+GL D + A+ RL IK RP LI Sbjct: 1 MVSSWRVQQAAQNIRAGAVIAYPTEAVWGLGCDPWDEEAVYRLLAIKLRPVEKGLILIAD 60 Query: 66 DISMVKKHASVDP-LSLHLAKLFWPGPLTLVL---DLL--STTDIHPLSTANLKTA---C 116 +I P L L WPGP T ++ +LL T IH T L+ Sbjct: 61 NIRQFDFLFEDFPELWLDRMASTWPGPNTWLVPHQNLLPEWITGIH--ETVALRVTDHPT 118 Query: 117 FRVPCGFTKKLIETYGHPLAIPSAN---RSGQISITNVKHILSSSI 159 R C LI T +P P+A R Q + +L S+ Sbjct: 119 VRELCALVGPLISTSANPAGRPAARSRLRVEQYFRGQINGVLGGSL 164 >gi|311746055|ref|ZP_07719840.1| Sua5/YciO/YrdC/YwlC family protein [Algoriphagus sp. PR1] gi|126576272|gb|EAZ80550.1| Sua5/YciO/YrdC/YwlC family protein [Algoriphagus sp. PR1] Length = 209 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 50/198 (25%), Positives = 88/198 (44%), Gaps = 20/198 (10%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP------LI 61 D +R+ L G + PT+TVYGL D N A+ R+ IK +NP + Sbjct: 14 DPKKIREIAALLRDGAVVIYPTDTVYGLGCDITNTRAVERICRIK---GINPRKHNFSFV 70 Query: 62 CHVSDISMVKKHASV--DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 C +D+S + + V P+ + K PGP T +L+ + T + + + KT RV Sbjct: 71 C--ADLSTISHYTRVITKPV-FKMMKKALPGPYTFILE--ANTQVPKILHSKKKTVGIRV 125 Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGGISKIGLE 177 P + L+E G PL S ++ + ++ + ++I GG + + Sbjct: 126 PDHKVPRMLVEELGQPLLSTSIRDEDEVLEYSTDPELIFEKYEHLVDVVIHGGFGQ-NIG 184 Query: 178 STIVNVQCEKKVRILRPG 195 ST+++ ++ I+R G Sbjct: 185 STVLDCTGH-EMEIIREG 201 >gi|145631248|ref|ZP_01787021.1| hypothetical protein CGSHi22421_04153 [Haemophilus influenzae R3021] gi|145637047|ref|ZP_01792710.1| hypothetical protein CGSHiHH_02268 [Haemophilus influenzae PittHH] gi|148828348|ref|YP_001293101.1| hypothetical protein CGSHiGG_09710 [Haemophilus influenzae PittGG] gi|144983175|gb|EDJ90670.1| hypothetical protein CGSHi22421_04153 [Haemophilus influenzae R3021] gi|145269701|gb|EDK09641.1| hypothetical protein CGSHiHH_02268 [Haemophilus influenzae PittHH] gi|148719590|gb|ABR00718.1| hypothetical protein CGSHiGG_09710 [Haemophilus influenzae PittGG] Length = 207 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 54/191 (28%), Positives = 83/191 (43%), Gaps = 15/191 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E L G I PT++ Y L + A+ R+ I+K P + SD+S + Sbjct: 17 INQAVEILQKGGVIVYPTDSGYALGCMMGDKHAMDRIVAIRKLPEGHNFTLVCSDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A V+ + L K PG T +L +T ++ L T+ KT RVP L+ Sbjct: 77 TYARVNNTAYRLIKNNTPGRYTFILT--ATKELPRRLMTSKRKTIGLRVPDNKIALDLLS 134 Query: 130 TYGHP-----LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 G P L +P+ + Q ++ L ++ LII GG +G E T V Sbjct: 135 ALGEPILSCSLMLPNEEHTTQSDPEEIRDRLE----HQVDLIIHGGY--LGQEPTTVVDL 188 Query: 185 CEKKVRILRPG 195 E+ ILR G Sbjct: 189 TEESPVILREG 199 >gi|70728990|ref|YP_258724.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas fluorescens Pf-5] gi|68343289|gb|AAY90895.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas fluorescens Pf-5] Length = 217 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 43/176 (24%), Positives = 75/176 (42%), Gaps = 9/176 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E + G + PT++ Y +A + AI R+ +++ + SD+S + Sbjct: 25 IKQAVEIIRGGGVVIYPTDSSYAVACQMGDKGAIERVRRLRQLDDKHNFALICSDLSQLG 84 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127 A +D + L K PGP T +L+ +HP +T RVP L Sbjct: 85 LFAKIDTGTFRLLKAHVPGPYTFILNATREVPRLLLHP----KRRTIGLRVPSNPIALAL 140 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + G PL S G + + + + ++ LIIDGG ST++N+ Sbjct: 141 LAELGEPLMSVSLIMPGDTEALSDPYEMRQLLEHQVDLIIDGGFGSTE-SSTVINL 195 >gi|54297353|ref|YP_123722.1| hypothetical protein lpp1398 [Legionella pneumophila str. Paris] gi|53751138|emb|CAH12549.1| hypothetical protein lpp1398 [Legionella pneumophila str. Paris] Length = 206 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 59/200 (29%), Positives = 89/200 (44%), Gaps = 18/200 (9%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTA---IRRLYEIKKRPAMNPLICHVSDIS 68 LRKA ++ G I PT++ Y L N +A IRRL ++ K M L+C D+S Sbjct: 17 LRKAVSIIEEGGLIVYPTDSGYALGCSLGNKSALERIRRLRQLDKHHNMT-LVCR--DLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FT 124 + +A V L K F PG T +L+ +HP +T RVP T Sbjct: 74 QLGTYAKVSNPIFRLLKAFTPGSYTFILNATHEVPRLMLHP----KRRTLGLRVPDNTIT 129 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNV 183 L+E PL + G + + + + +I LIIDGG G E +T+V++ Sbjct: 130 LSLLECLEAPLMSTTLILPGAQAPLSEPEAIKDLLGNQIDLIIDGG--NCGHEPTTVVDL 187 Query: 184 QCEKKVRILRPGGLEIETLK 203 + + I+R G + E K Sbjct: 188 TGDYPI-IIREGKGDPEPFK 206 >gi|260854965|ref|YP_003228856.1| hypothetical protein ECO26_1832 [Escherichia coli O26:H11 str. 11368] gi|257753614|dbj|BAI25116.1| conserved predicted protein [Escherichia coli O26:H11 str. 11368] gi|323153301|gb|EFZ39559.1| yrdC domain protein [Escherichia coli EPECa14] Length = 206 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 80/186 (43%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E + G I PT++ Y L + A+ R+ I++ P + D+S + Sbjct: 17 INQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 ++ VD ++ L K PG T +L T ++ L KT RVP + L+E Sbjct: 77 TYSFVDNVAFRLMKNNTPGNYTFILK--GTKEVPRRLLQEKRKTIGMRVPSNPIAQALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G P+ S G + + + K++ LII GG +G + T V + K Sbjct: 135 ALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGGY--LGQKPTTVIDLTDDKP 192 Query: 190 RILRPG 195 ++R G Sbjct: 193 VVVREG 198 >gi|167753477|ref|ZP_02425604.1| hypothetical protein ALIPUT_01751 [Alistipes putredinis DSM 17216] gi|167658102|gb|EDS02232.1| hypothetical protein ALIPUT_01751 [Alistipes putredinis DSM 17216] Length = 200 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 40/172 (23%), Positives = 75/172 (43%), Gaps = 6/172 (3%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 + PT++VY R+ A+ RL IK + + S + + + VD L Sbjct: 28 VIYPTDSVYAFGCSIRSAKAVERLRRIKGKDLTTFSVVFDS-LGQIADYCRVDNAQFRLL 86 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRS 143 K PGP T +LD +++ + + +T R+P + ++E G PL S Sbjct: 87 KQNLPGPFTFLLD--ASSRMPHKALERRRTIGIRIPDNSIPRAIVERLGAPLLTSSVLDD 144 Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 + ++ +++ L+IDGG+ + +T+V++ + ILR G Sbjct: 145 EETEYMTDPELIHERYGRDVELVIDGGVGD-AVPTTVVDLTGGEP-EILREG 194 >gi|320534366|ref|ZP_08034852.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320133408|gb|EFW25870.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 205 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 51/186 (27%), Positives = 83/186 (44%), Gaps = 9/186 (4%) Query: 20 DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL 79 D GL +A PT++ Y LA N + R+ I++ + +D V A V Sbjct: 26 DGGL-VAYPTDSGYALACAPGNKEGLDRIRTIRQLDGKHNFTFVCADFGQVGPLAIVGNN 84 Query: 80 SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK--TACFRVPC-GFTKKLIETYGHPLA 136 + L K PGP T +L T D+ P T N K T R+P T+ L+ +G P+ Sbjct: 85 AFRLIKRLTPGPWTFILK--GTKDV-PRMTLNPKKHTLGVRIPDHAITQSLVAEFGAPIL 141 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 + R GQ + S+ I ++I+G + + G +T+V++ + +LR G Sbjct: 142 SSTFIRPGQEEPETNGWEIQDSLGHLIDVVIEGPVGQ-GESTTVVDL-TDDVPEVLREGA 199 Query: 197 LEIETL 202 +I L Sbjct: 200 GDISLL 205 >gi|289627012|ref|ZP_06459966.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] Length = 162 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 46/144 (31%), Positives = 62/144 (43%), Gaps = 11/144 (7%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + S +++A + + AG IA PTE V+GL D + A+ RL IK RP LI Sbjct: 1 MVSSWRVQQAAQDIRAGAVIAYPTEAVWGLGCDPWDEEAVYRLLAIKSRPVEKGLILIAD 60 Query: 66 DISMVKKHASVDP-LSLHLAKLFWPGPLTLVL---DLL--STTDIHPLSTANLKTA---C 116 +I P L L WPGP T ++ +LL T IH T L+ Sbjct: 61 NIRQFDFLFEDFPQLWLDRMASTWPGPNTWLVPHQNLLPEWITGIH--ETVALRVTDHPT 118 Query: 117 FRVPCGFTKKLIETYGHPLAIPSA 140 R C LI T +P P+A Sbjct: 119 VRELCALVGPLISTSANPAGRPAA 142 >gi|239993815|ref|ZP_04714339.1| Sua5/YciO/YrdC/YwlC family protein [Alteromonas macleodii ATCC 27126] Length = 206 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 49/186 (26%), Positives = 79/186 (42%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +ACE + G + PT++ Y + + A+ +L I++ + D+S + Sbjct: 17 ISQACELIREGAVVVYPTDSGYAIGCQMEDKKALEQLCRIRQIDKDHNFTLMCRDMSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKKLIE 129 +A VD + K PG T VL +T ++ L KT RVP L+E Sbjct: 77 IYAKVDNTAFRQIKNNTPGRYTFVLK--ATREVPKRLQNPKRKTIGIRVPDNAIALALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL S G + ++ ++ K++ LII GG IG + T V E Sbjct: 135 ELGEPLMSTSLILPGNTMAESDPDVIRDNLEKQVGLIIHGGY--IGEQPTTVVDLSEDTP 192 Query: 190 RILRPG 195 I+R G Sbjct: 193 VIVRHG 198 >gi|192361717|ref|YP_001982272.1| Sua5/YciO/YrdC/YwlC family protein [Cellvibrio japonicus Ueda107] gi|190687882|gb|ACE85560.1| Sua5/YciO/YrdC/YwlC family protein [Cellvibrio japonicus Ueda107] Length = 205 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 43/172 (25%), Positives = 76/172 (44%), Gaps = 6/172 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A + + G + PT++ Y L + A+ R+ +++ + D+S + Sbjct: 17 IQQAVDIIRKGGLVVYPTDSAYALGCHIGDKDALERIRTLRQLDKYHNFTLMCRDLSELA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKKLIE 129 +A V+ + L K PG T +L+ +T D+ L KT RVP L+E Sbjct: 77 TYARVNNQAFRLLKNHTPGAYTFILE--ATADVPRRLMHPKRKTIGLRVPDNAIALALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 G PL S G+ + + ++ ++ L+IDGG GLE T V Sbjct: 135 ELGEPLMTSSLLLPGEEYPMTDPYDIRETLEHQVDLVIDGGYC--GLEPTTV 184 >gi|52841673|ref|YP_095472.1| translation factor [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628784|gb|AAU27525.1| translation factor [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 221 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 59/200 (29%), Positives = 89/200 (44%), Gaps = 18/200 (9%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTA---IRRLYEIKKRPAMNPLICHVSDIS 68 LRKA ++ G I PT++ Y L N +A IRRL ++ K M L+C D+S Sbjct: 32 LRKAVSIIEEGGLIVYPTDSGYALGCSLGNKSALERIRRLRQLDKHHNMT-LVCR--DLS 88 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FT 124 + +A V L K F PG T +L+ +HP +T RVP T Sbjct: 89 QLGTYAKVSNPIFRLLKAFTPGSYTFILNATHEVPRLMLHP----KRRTLGLRVPDNTIT 144 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNV 183 L+E PL + G + + + + +I LIIDGG G E +T+V++ Sbjct: 145 LSLLECLEAPLMSTTLILPGAEAPLSEPEAIKDLLGNQIDLIIDGG--NCGHEPTTVVDL 202 Query: 184 QCEKKVRILRPGGLEIETLK 203 + + I+R G + E K Sbjct: 203 TGDYPI-IIREGKGDPEPFK 221 >gi|109899136|ref|YP_662391.1| Sua5/YciO/YrdC/YwlC family protein [Pseudoalteromonas atlantica T6c] gi|109701417|gb|ABG41337.1| translation factor SUA5 [Pseudoalteromonas atlantica T6c] Length = 206 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 44/190 (23%), Positives = 85/190 (44%), Gaps = 6/190 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++ACE + G + PT++ Y + + +A+ ++ I++ + D+S + Sbjct: 17 IKQACELIHNGQVVVYPTDSGYSIGCHMDDKSALEQICRIRQIGKDHNFTLMCRDMSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKKLIE 129 ++A VD + + K PGP T +L +T ++ L +T RVP L+E Sbjct: 77 EYAQVDNAAFRMIKNNTPGPYTFILK--ATKEVPKRLQNPKRRTIGIRVPDNAIALALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL + I + + + K++ LII GG +G + T V + + Sbjct: 135 ELGEPLMSTTLILPNAIVAESDPDEIRDKLEKQVGLIIHGGF--LGEQPTTVIDLSDGEP 192 Query: 190 RILRPGGLEI 199 I+R G ++ Sbjct: 193 TIIREGSGDV 202 >gi|254496473|ref|ZP_05109350.1| translation factor [Legionella drancourtii LLAP12] gi|254354329|gb|EET12987.1| translation factor [Legionella drancourtii LLAP12] Length = 214 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 58/192 (30%), Positives = 86/192 (44%), Gaps = 18/192 (9%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTA---IRRLYEIKKRPAMNPLICHVSDIS 68 LRKA ++ G I PT++ Y L N A IRRL ++ K M L+C D+S Sbjct: 25 LRKAATIIEDGGVIVYPTDSGYALGCSLGNKAALERIRRLRQLDKNHNMT-LVCR--DLS 81 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCGF-T 124 + +A V L K+ PG T +L+ +HP KT RVP T Sbjct: 82 QLGTYARVPNPIFRLLKVLTPGSYTFILNATHEVPRLMLHPKK----KTLGLRVPDNLIT 137 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNV 183 L+ET PL + G + + + + ++ L+IDGG G E +T+V++ Sbjct: 138 LALLETLEAPLMSSTLILPGAKAPLSEPEAIRDILGNQVDLVIDGG--NCGQEPTTVVDL 195 Query: 184 QCEKKVRILRPG 195 + V ILR G Sbjct: 196 TGDYPV-ILREG 206 >gi|218195427|gb|EEC77854.1| hypothetical protein OsI_17110 [Oryza sativa Indica Group] Length = 408 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 50/181 (27%), Positives = 80/181 (44%), Gaps = 12/181 (6%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81 G +A+PT++ Y L + A+ RL I++ + L D+S V +A VD Sbjct: 224 GAVLAVPTDSSYALVCQLDDKDAVDRLRRIRQVDEKHHLTLLCRDLSEVSNYARVDNRQY 283 Query: 82 HLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC--GFTKKLIETYGHPLAIP 138 L K PGP T +LD +T ++ +S KT RVP G + L+E +G PL Sbjct: 284 RLVKQATPGPYTFILD--ATKEVPRRVSHPQRKTIGLRVPDRKGL-QLLLELHGAPLLAT 340 Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV----NVQCEKKVRILRP 194 + G+ N + + +I ++D G LE T V ++ R++R Sbjct: 341 TLIPPGETEPMNDPSEIRARFEHQIDAVVDAGACP--LEPTTVVDLTDMATGGDPRVVRE 398 Query: 195 G 195 G Sbjct: 399 G 399 >gi|183599267|ref|ZP_02960760.1| hypothetical protein PROSTU_02728 [Providencia stuartii ATCC 25827] gi|188021499|gb|EDU59539.1| hypothetical protein PROSTU_02728 [Providencia stuartii ATCC 25827] Length = 206 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 74/172 (43%), Gaps = 6/172 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + ++ E L+ G I PT++ Y + A++R+ I++ A + D+S + Sbjct: 17 INQSVEILNKGGVIVYPTDSGYAIGCRLEEKEALQRICRIRQLDANHNFTLMCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD + L K PG T + L T ++ L KT RVP + L+E Sbjct: 77 NYAHVDNTAFRLIKNNTPGNYTFI--LRGTKEVPRRLMNEKRKTIGLRVPSNPIARDLLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 G PL S G + + + K++ L+I GG IG + T V Sbjct: 135 AVGEPLMSTSLIMPGDDFTQSDPEEIRDLLGKQVDLVIHGGY--IGQKPTTV 184 >gi|238797207|ref|ZP_04640708.1| Ribosomal modification protein RimN [Yersinia mollaretii ATCC 43969] gi|238718844|gb|EEQ10659.1| Ribosomal modification protein RimN [Yersinia mollaretii ATCC 43969] Length = 188 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 41/126 (32%), Positives = 61/126 (48%), Gaps = 10/126 (7%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 IA PTE V+GL D + A+ L +K+RP LI ++ +K + VD SL + Sbjct: 21 IAYPTEAVFGLGCDPDSEKAVNALLTLKQRPWQKGLILIAANYEQLKPY--VDDSSLSDS 78 Query: 85 K---LF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIP 138 + +F WPG +T V+ + T+ T + + RV ++L YG PL Sbjct: 79 QRETIFSCWPGAVTWVIP--ARTETPRWLTGSFDSLAVRVSDHPLVQQLCLQYGKPLVST 136 Query: 139 SANRSG 144 SAN SG Sbjct: 137 SANLSG 142 >gi|260550969|ref|ZP_05825174.1| yrdC domain-containing protein [Acinetobacter sp. RUH2624] gi|260405917|gb|EEW99404.1| yrdC domain-containing protein [Acinetobacter sp. RUH2624] Length = 205 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 47/196 (23%), Positives = 83/196 (42%), Gaps = 10/196 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E + AG + PT+ Y + N A+ R+ +I+ + D+S + Sbjct: 16 IDQAVERIRAGDVVVYPTDAAYAIGCQIGNKNAMERIAQIRDLGPKHQYAIMCCDLSDIA 75 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127 +A VD + L K P T +L S +HP KT R+P + L Sbjct: 76 TYAKVDNATYRLLKANTPAITTFILPATSEVPRRLMHP----KKKTIGLRIPSNPICQAL 131 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ G PL + GQ + + + S + K I + IDGG + ++IV++ E Sbjct: 132 LKELGEPLLTSTLILPGQEDPLDDPYDIESQLSKRIDVFIDGGFGTL-TTTSIVDLSGEH 190 Query: 188 KVRILRPGGLEIETLK 203 I+R G ++ + Sbjct: 191 P-EIIRHGAGDVSAFE 205 >gi|332521840|ref|ZP_08398289.1| Sua5/YciO/YrdC/YwlC family protein [Lacinutrix algicola 5H-3-7-4] gi|332042512|gb|EGI78714.1| Sua5/YciO/YrdC/YwlC family protein [Lacinutrix algicola 5H-3-7-4] Length = 206 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 47/179 (26%), Positives = 75/179 (41%), Gaps = 15/179 (8%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK---R 54 Q + I + N ++K E L G + PT+TVYGL D N A+ R+ IK Sbjct: 3 QFIRIYEENPNPKEIKKVIEVLKNGGLVIYPTDTVYGLGCDINNTKALERIARIKGVKLE 62 Query: 55 PAMNPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK 113 A IC D+S + + +D + + K PGP T + L + P K Sbjct: 63 KANLSFICE--DLSNLSDYVKQIDTATFKILKRALPGPYTFI---LPGSKSLPSVFKKKK 117 Query: 114 TACFRVP-CGFTKKLIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGG 170 R+P T ++++ G+PL S ++ T ++ + L+IDGG Sbjct: 118 EVGIRIPNNNITLEIVKALGNPLVSTSIRDEDEVLEYTTDPELILEKWDNLVDLVIDGG 176 >gi|228471330|ref|ZP_04056131.1| Sua5/YciO/YrdC/YwlC family protein [Porphyromonas uenonis 60-3] gi|228306831|gb|EEK15944.1| Sua5/YciO/YrdC/YwlC family protein [Porphyromonas uenonis 60-3] Length = 230 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 52/195 (26%), Positives = 88/195 (45%), Gaps = 22/195 (11%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV-SDIS 68 +A R+A + L G I PT+T++GL D+ N A+ RL +K RP P++ V SD+ Sbjct: 47 SAAREAVDVLQRGGIILYPTDTIWGLGCDATNEEAVDRLSALKGRPTGKPMLMLVDSDMR 106 Query: 69 MVKKHASVDPLSLHLAK-------LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 + +V ++ L + +PG + LL+ + A+ T C + C Sbjct: 107 IPSYVRTVPSMAYQLIDVAVRPLTIIYPGGRNVAPQLLAEDGSIGIRIAS-DTLCQEI-C 164 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITN---VKHILSSSICKEIPLIIDGGISKIGLES 178 ++ PL SAN +G S N + H L + +PL + I G+ S Sbjct: 165 RLLRR-------PLVSTSANLAGTTSPHNYSEIDHELIKLVDYVVPLRQEEHID--GMPS 215 Query: 179 TIVNVQCEKKVRILR 193 I+ + +VR++R Sbjct: 216 DIIKLGLNNEVRVIR 230 >gi|145641202|ref|ZP_01796782.1| hypothetical protein CGSHiR3021_05354 [Haemophilus influenzae R3021] gi|145274039|gb|EDK13905.1| hypothetical protein CGSHiR3021_05354 [Haemophilus influenzae 22.4-21] gi|309973339|gb|ADO96540.1| Conserved hypothetical protein [Haemophilus influenzae R2846] Length = 207 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 54/191 (28%), Positives = 82/191 (42%), Gaps = 15/191 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E L G I PT++ Y L + A+ R+ I+K P + SD+S + Sbjct: 17 INQAVEILQKGGVIVYPTDSGYALGCMMGDKHAMDRIVAIRKLPEGHNFTLVCSDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A V+ + L K PG T +L +T ++ L T+ KT RVP L+ Sbjct: 77 TYARVNNTAYRLIKNNTPGRYTFILT--ATKELPRRLMTSKRKTIGLRVPDNKIALDLLS 134 Query: 130 TYGHP-----LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 G P L +P + Q ++ L ++ LII GG +G E T V Sbjct: 135 ALGEPILSCSLMLPGEEHTTQSDPEEIRDRLE----HQVDLIIHGGY--LGQEPTTVVDL 188 Query: 185 CEKKVRILRPG 195 E+ ILR G Sbjct: 189 TEESPVILREG 199 >gi|119627723|gb|EAX07318.1| yrdC domain containing (E. coli), isoform CRA_b [Homo sapiens] Length = 239 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 60/118 (50%), Gaps = 19/118 (16%) Query: 89 PGPLTLVLDLLS--TTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQ 145 PGP+TLV++ D++P + R+P F + L + + PLA+ SAN S Q Sbjct: 106 PGPVTLVMERSEELNKDLNPFTP----LVGIRIPDHAFMQDLAQMFEGPLALTSANLSSQ 161 Query: 146 ISITNVKHILSSSICKEIPLIIDGGISKIG--------LESTIVNVQCEKKVRILRPG 195 S NV+ + ++ L+IDGG +IG L ST+V++ K I+RPG Sbjct: 162 ASSLNVEEF--QDLWPQLSLVIDGG--QIGDGQSPECRLGSTVVDLSVPGKFGIIRPG 215 >gi|119486656|ref|ZP_01620706.1| hypothetical protein L8106_12935 [Lyngbya sp. PCC 8106] gi|119456273|gb|EAW37405.1| hypothetical protein L8106_12935 [Lyngbya sp. PCC 8106] Length = 201 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 52/186 (27%), Positives = 85/186 (45%), Gaps = 20/186 (10%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK--HASVDPLSL- 81 ++ PT+TV LAV P ++++K+R A PLI + + +V+ L + Sbjct: 20 VSFPTDTVPALAV---QPQQAELIFQLKQRSADKPLILMGATPESLWPFVQGTVEELQVW 76 Query: 82 -HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSA 140 +A+ +WPG LTLVL S ++ ++ T R+P + I PLA SA Sbjct: 77 SQMARQYWPGALTLVLP-ASEKVPRAMNPSDPTTIGLRIPNAEISRAILQRTGPLATTSA 135 Query: 141 NRSGQISITNVKHILSSSICKEIPLI--IDGGISKIGLE-----STIVNVQCEKKVRILR 193 N SGQ + + + I + P + +D G K+ E ST++ E ILR Sbjct: 136 NLSGQPPLLTM-----AEIEVQFPQVFTLDPGELKVVSEVSCVPSTVIKWNREGTWNILR 190 Query: 194 PGGLEI 199 G + + Sbjct: 191 QGAVTV 196 >gi|148826193|ref|YP_001290946.1| hypothetical protein CGSHiEE_06050 [Haemophilus influenzae PittEE] gi|229846228|ref|ZP_04466340.1| hypothetical protein CGSHi7P49H1_05268 [Haemophilus influenzae 7P49H1] gi|148716353|gb|ABQ98563.1| hypothetical protein CGSHiEE_06050 [Haemophilus influenzae PittEE] gi|229811232|gb|EEP46949.1| hypothetical protein CGSHi7P49H1_05268 [Haemophilus influenzae 7P49H1] Length = 207 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 54/191 (28%), Positives = 82/191 (42%), Gaps = 15/191 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E L G I PT++ Y L + A+ R+ I+K P + SD+S + Sbjct: 17 INQAVEILQKGGVIVYPTDSGYALGCMMGDKHAMDRIVAIRKLPEGHNFTLVCSDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A V+ + L K PG T +L +T ++ L T+ KT RVP L+ Sbjct: 77 TYARVNNTAYRLIKNNTPGRYTFILT--ATKELPRRLMTSKRKTIGLRVPDNKIALDLLS 134 Query: 130 TYGHP-----LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 G P L +P + Q ++ L ++ LII GG +G E T V Sbjct: 135 ALGEPILSCSLMLPGEEHTTQSDPEEIRDRLE----HQVDLIIHGGY--LGQEPTTVVDL 188 Query: 185 CEKKVRILRPG 195 E+ ILR G Sbjct: 189 TEESPVILREG 199 >gi|54294522|ref|YP_126937.1| hypothetical protein lpl1598 [Legionella pneumophila str. Lens] gi|53754354|emb|CAH15838.1| hypothetical protein lpl1598 [Legionella pneumophila str. Lens] gi|307610146|emb|CBW99692.1| hypothetical protein LPW_14601 [Legionella pneumophila 130b] Length = 206 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 59/200 (29%), Positives = 89/200 (44%), Gaps = 18/200 (9%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTA---IRRLYEIKKRPAMNPLICHVSDIS 68 LRKA ++ G I PT++ Y L N +A IRRL ++ K M L+C D+S Sbjct: 17 LRKAVSIIEEGGLIVYPTDSGYALGCSLGNKSALERIRRLRQLDKHHNMT-LVCR--DLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FT 124 + +A V L K F PG T +L+ +HP +T RVP T Sbjct: 74 QLGTYAKVSNPIFRLLKAFTPGSYTFILNATHEVPRLMLHP----KRRTLGLRVPDNTIT 129 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNV 183 L+E PL + G + + + + +I LIIDGG G E +T+V++ Sbjct: 130 LSLLECLEAPLMSTTLILPGAEAPLSEPEAIKDLLGNQIDLIIDGG--NCGHEPTTVVDL 187 Query: 184 QCEKKVRILRPGGLEIETLK 203 + + I+R G + E K Sbjct: 188 TGDYPI-IIREGKGDPEPFK 206 >gi|297183543|gb|ADI19672.1| putative translation factor (sua5) [uncultured Alteromonadales bacterium HF4000_16C08] Length = 191 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 47/178 (26%), Positives = 84/178 (47%), Gaps = 12/178 (6%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 + G+ + PTE V G+ D + +A+ L EIK+RP +I ++ S + + + + Sbjct: 19 FENGMLLVYPTEAVMGIGCDPDSESAVLALLEIKQRPIEKGVILVAANYSQLLPYVNDNA 78 Query: 79 LSLHL-AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPL 135 + + ++F WPGP T +L ST+ L+ + K A + + ET G P+ Sbjct: 79 IRPDMRTEIFSSWPGPNTWLLP-KSTSAPMWLTGKHDKIAVRVSNHPTVRAMCETLGKPV 137 Query: 136 AIPSANRSGQI---SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 SAN +GQ ++ K I + S+ L ++G + K STI + + +R Sbjct: 138 VSTSANLTGQPPARTLDEAKTIFADSV-----LYVEGSVGKSSKPSTIRDGETGDIIR 190 >gi|302791063|ref|XP_002977298.1| hypothetical protein SELMODRAFT_176163 [Selaginella moellendorffii] gi|300154668|gb|EFJ21302.1| hypothetical protein SELMODRAFT_176163 [Selaginella moellendorffii] Length = 297 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 49/190 (25%), Positives = 82/190 (43%), Gaps = 17/190 (8%) Query: 20 DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL 79 D G+ + +PT+T+Y + D N AI RLY IK A PL + K+ + P Sbjct: 95 DGGVGV-VPTDTIYAIVCDLHNRAAIERLYRIKDMDAKKPLSILCRSFQDIDKYTTGFPT 153 Query: 80 S-LHLAKLFWPGPLTLVLDLLSTTDIHPLST----------ANLKTACFRVP-CGFTKKL 127 S +A+ PGP T +L ++ D+ T A K+ R+P +++ Sbjct: 154 SFFRVARQCLPGPYTFILP--ASKDMPKQCTRFGGSVAASYAPRKSVGVRIPDDAVWREM 211 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 HPL S R I++ + + I+DGG +++ ST+V++ Sbjct: 212 AGQLEHPLLCTSVRRPADDEWMLDPAIIADTY-GSVDFIVDGG-TRVANPSTVVDMTGTM 269 Query: 188 KVRILRPGGL 197 V + R G+ Sbjct: 270 PVVLRRGKGV 279 >gi|149278884|ref|ZP_01885019.1| hypothetical protein PBAL39_06896 [Pedobacter sp. BAL39] gi|149230503|gb|EDM35887.1| hypothetical protein PBAL39_06896 [Pedobacter sp. BAL39] Length = 188 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 67/137 (48%), Gaps = 9/137 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV-SDISMV 70 + K + L G I PT+TV+GL D+ N A+ R+ +IK R + I + +D + Sbjct: 6 IDKTLQILKDGGVILYPTDTVWGLGCDATNEQAVERINDIKARSSDKSFIVLLDTDAKLQ 65 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 A V ++ L + + PLTLV L+ I+ + ++ V GF ++L Sbjct: 66 SYIAEVPDVAYDLIE-YAENPLTLVFPGAKNLAKNVINADGSVGIRI----VKHGFCQQL 120 Query: 128 IETYGHPLAIPSANRSG 144 ++ + P+ SAN+SG Sbjct: 121 LQRFRKPITSTSANKSG 137 >gi|301168423|emb|CBW28013.1| conserved hypothetical protein [Bacteriovorax marinus SJ] Length = 207 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 49/194 (25%), Positives = 84/194 (43%), Gaps = 8/194 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN--PLICHVS 65 D L+KA E L G + PT+T + + D N + +LY +K + LIC Sbjct: 11 DDRVLKKASETLKDGGLVCYPTDTNWIIVCDPFNKKGLEKLYRVKNEGPLKHYSLICDT- 69 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGFT 124 IS + A + + + + PG T + + + + K R P T Sbjct: 70 -ISHAGEVAYIHDSAFKMIRKKVPGHYTFIFEAKKKITRAVQANKSDKEVGVRFCPDSIT 128 Query: 125 KKLIETYGHPLAIP--SANRSG-QISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 + LIE +G L +A+ G ++ T + + + + +IID G + ESTIV Sbjct: 129 QNLIEIHGDVLLSTNITADLLGLELGETFYSYQIEETFRGPLDMIIDPGEYEFVGESTIV 188 Query: 182 NVQCEKKVRILRPG 195 ++ E +V ++R G Sbjct: 189 DLSVEGEVEVIREG 202 >gi|288941781|ref|YP_003444021.1| SUA5/yciO/yrdC domain-containing protein [Allochromatium vinosum DSM 180] gi|288897153|gb|ADC62989.1| SUA5/yciO/yrdC domain protein [Allochromatium vinosum DSM 180] Length = 204 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 44/138 (31%), Positives = 58/138 (42%), Gaps = 8/138 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 LR A L G +A PTE VYGL D N A+ RL IK+R LI +D ++ Sbjct: 26 LRLAVRCLRQGGVLAYPTEAVYGLGCDPWNGRAVARLLAIKRRSMTKGLILIAADPDQLR 85 Query: 72 KHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 V+PL + WPGP T +L T T T RV +L Sbjct: 86 PF--VEPLEPERQREIHATWPGPNTWLLPARVATPA--WLTGRFDTLAVRVSAHPLVAEL 141 Query: 128 IETYGHPLAIPSANRSGQ 145 YG + SAN++ + Sbjct: 142 CRAYGGAIVSTSANQAAR 159 >gi|16330823|ref|NP_441551.1| hypothetical protein sll1866 [Synechocystis sp. PCC 6803] gi|1653316|dbj|BAA18231.1| sll1866 [Synechocystis sp. PCC 6803] Length = 199 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 55/182 (30%), Positives = 81/182 (44%), Gaps = 18/182 (9%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 ++ PT+TV LAV N I YE+K+R A PLI + + + + + L Sbjct: 19 VSFPTDTVPALAVRPENSALI---YELKQREASKPLILMAATVEQILPYLAGSQREKQLW 75 Query: 85 KL----FWPGPLTLVLDLLST--TDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIP 138 + +WPG LTLVL +I+P +T R+P I PLA Sbjct: 76 QAVMAEYWPGALTLVLPCSEKLPPEINPRQD---QTIGVRIPRQAISLEILLQTGPLATT 132 Query: 139 SANRSGQI---SITNVKHILSSSICKE-IPLIIDGGISKIGLESTIVNVQCEKKV-RILR 193 SAN SGQ + ++ + C + + L G I K GL ST+ K++ +ILR Sbjct: 133 SANLSGQPPLEKLADIAETFPAVHCLDCLSLEQQGPIGK-GLPSTVAQWDGAKEIFQILR 191 Query: 194 PG 195 G Sbjct: 192 QG 193 >gi|88810631|ref|ZP_01125888.1| putative translation factor SUA5 [Nitrococcus mobilis Nb-231] gi|88792261|gb|EAR23371.1| putative translation factor SUA5 [Nitrococcus mobilis Nb-231] Length = 207 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 51/185 (27%), Positives = 77/185 (41%), Gaps = 7/185 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +R+ E L G IA PT+T Y L A+ R+ ++K + D+S + Sbjct: 17 IRRTAEILQRGGVIAYPTDTAYALGCCMGEREAVERIRRLRKLHERHNFTLACRDLSDIG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKKLIE 129 +A V + L K PGP T VL +T ++ L KT RVP + Sbjct: 77 TYAKVGNNAFRLLKAHTPGPYTFVLP--ATGEVPRRLQHPKRKTIGIRVPDSAVANAICA 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKK 188 G PL + + ++ I ++ LIIDGG GLE ST++++ E Sbjct: 135 ELGAPLMTTTLLLPHEDLPLTDPELIRERIGAQLDLIIDGGAG--GLELSTVIDLTGETP 192 Query: 189 VRILR 193 I R Sbjct: 193 AVIRR 197 >gi|332531465|ref|ZP_08407369.1| sua5/ycio/yrdc/ywlc family protein [Hylemonella gracilis ATCC 19624] gi|332039134|gb|EGI75556.1| sua5/ycio/yrdc/ywlc family protein [Hylemonella gracilis ATCC 19624] Length = 207 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 50/185 (27%), Positives = 79/185 (42%), Gaps = 4/185 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++A L +G +A+PT++ Y L + A RL I++ + L D+S + Sbjct: 17 LKQAVALLASGQVLAVPTDSCYALVCHLDDKAAAERLRAIRRIDDKHHLTLLCRDLSELA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130 +A VD L K PGP +L+ S LS KT RVP ++L+ Sbjct: 77 NYARVDNRQYRLLKAATPGPWAFILE-ASKEVPRRLSHPARKTIGLRVPDHKVLQELLAL 135 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 +G PL + +G+ N + S ++ +ID G LE T V + Sbjct: 136 HGAPLLATTLIPAGETEPLNDAEEIRSRYQHDLAAVIDAGACP--LEPTTVIDLTGDEPE 193 Query: 191 ILRPG 195 I+R G Sbjct: 194 IIRRG 198 >gi|303248116|ref|ZP_07334381.1| SUA5/yciO/yrdC domain protein [Desulfovibrio fructosovorans JJ] gi|302490515|gb|EFL50423.1| SUA5/yciO/yrdC domain protein [Desulfovibrio fructosovorans JJ] Length = 212 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 57/206 (27%), Positives = 86/206 (41%), Gaps = 24/206 (11%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A L AG + PTET + L + A+ R+ IK RPA PL V V + A Sbjct: 9 AARGLMAGGCLVYPTETFFALGALATEAAALARIVSIKARPATKPLPLLVGG---VGQFA 65 Query: 75 SVDPLSL----------HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 ++ P LA+ FWPGPL+LV + D P +K A RV FT Sbjct: 66 AILPEGFAAGLLAADFDDLARRFWPGPLSLV---VPCRDALP---GLVKDASGRVSVRFT 119 Query: 125 -----KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 L G + SAN SG + + + + + ++ +G G+ ST Sbjct: 120 PHPTAAALCRLAGGAVVATSANVSGNPPAASPEALDPAVVAAADGVVTEGPAPGGGVAST 179 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRA 205 + + +++RI R G + L+ A Sbjct: 180 VAGLLGGRRLRIFREGATPLGALRAA 205 >gi|91070575|gb|ABE11478.1| conserved hypothetical protein [uncultured Prochlorococcus marinus clone HOT0M-7C8] Length = 193 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 59/199 (29%), Positives = 89/199 (44%), Gaps = 22/199 (11%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD----IS 68 + A + L AGLPI PT+T+ + P + +YE KKR PLI S I Sbjct: 7 KSALKTLRAGLPIIFPTDTLPAIGC---LPKFSKIIYEFKKRDRNKPLILMGSKYKQLID 63 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 V + A D +A +WPG LT+V+ ++ + L T+ T R+P + L Sbjct: 64 FVHESAKED--FEKIASKYWPGALTMVIP--ASEHQNALLTSKDHTLGLRIPHSSIAQSL 119 Query: 128 IETYGHPLAIPSANRSGQISITNVKHIL----SSSICKEIPLIIDGGISKIGLESTIVNV 183 I+ G PL SAN SG + I S +I IP G + STI++ Sbjct: 120 IQETG-PLLTSSANISGFTGSITAEGIALDFPSVAILGPIPWEKSSGKA-----STIISW 173 Query: 184 QCEKKVRILRPGGLEIETL 202 + R++R G + ++ L Sbjct: 174 KKIGDWRLIREGEVLVQEL 192 >gi|260592176|ref|ZP_05857634.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella veroralis F0319] gi|260535810|gb|EEX18427.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella veroralis F0319] Length = 189 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 70/143 (48%), Gaps = 5/143 (3%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + ++KA E + G I PT+TV+G+ D+ N A+ ++Y +K+R LIC V + Sbjct: 5 DDIKKAIEVMKQGGIILYPTDTVWGIGCDATNAEAVAKVYSLKRRDDSKALICLVDSDNR 64 Query: 70 VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 ++++ ++ ++ L P TL+LD ++ P A + R+ F+ +L Sbjct: 65 LQRYVHNIPDVAWQLIDAV-EKPTTLILD--GAVNLAPNLIAEDGSIGIRITKEPFSHEL 121 Query: 128 IETYGHPLAIPSANRSGQISITN 150 + + SAN SG+ + N Sbjct: 122 CYRFQKAIVSTSANISGEPAAQN 144 >gi|269215063|ref|ZP_05987667.2| protein RimN [Neisseria lactamica ATCC 23970] gi|269208379|gb|EEZ74834.1| protein RimN [Neisseria lactamica ATCC 23970] Length = 189 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 45/187 (24%), Positives = 82/187 (43%), Gaps = 5/187 (2%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I ++A RK +L G +A PTE+ YGL A+ +L +KKRP +I + Sbjct: 6 IIAASAQRKLSVYLKKGGLVAYPTESCYGLGCLPTLAKALGKLAHLKKRPQHKGMIVIGN 65 Query: 66 DISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123 ++ + +L + + WP P T +L S + L R+P Sbjct: 66 QFEQLQPLLQMPSENLQDMLRKEWPAPKTFLLSAKSCV-LPELRGKQRSKLAVRIPDHAG 124 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 ++L + G PL S NR+G+ + + + +++ I+ G I + S I++ Sbjct: 125 ARRLCQALGMPLVSTSCNRAGKRACRAEREV-RRQFGRDV-WIVGGRIGRQKSPSQIIDG 182 Query: 184 QCEKKVR 190 + K++R Sbjct: 183 ETGKRLR 189 >gi|329946638|ref|ZP_08294050.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328526449|gb|EGF53462.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 205 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 51/186 (27%), Positives = 84/186 (45%), Gaps = 9/186 (4%) Query: 20 DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL 79 D GL +A PT++ Y LA N + R+ I++ + +D + V A V Sbjct: 26 DGGL-VAYPTDSGYALACAPGNKEGLDRIRAIRQLDGKHNFTFVCADFAQVGPLAIVGNN 84 Query: 80 SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK--TACFRVPC-GFTKKLIETYGHPLA 136 + L K PGP T +L T D+ P T N K T R+P T+ L+ +G P+ Sbjct: 85 AFRLIKRLTPGPWTFILK--GTKDV-PRMTLNPKKHTLGVRIPDHAITQSLVAEFGAPIL 141 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 + R GQ + S+ I ++I+G + + G +T+V++ + +LR G Sbjct: 142 SSTFIRPGQEEPETNGWEVEESLGHLIDVVIEGPVGQ-GEPTTVVDL-TDDVPEVLREGA 199 Query: 197 LEIETL 202 +I L Sbjct: 200 GDISLL 205 >gi|308188319|ref|YP_003932450.1| hypothetical protein Pvag_2851 [Pantoea vagans C9-1] gi|308058829|gb|ADO11001.1| Uncharacterized protein yrdC [Pantoea vagans C9-1] Length = 190 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 43/186 (23%), Positives = 82/186 (44%), Gaps = 35/186 (18%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++L E L+ IA PTE V+GL D + +A+ L +K+RP LI +D S Sbjct: 7 ADSLETCLEHLNRQAVIAYPTEAVFGLGCDPDSESAVMALLALKQRPVEKGLILIAADYS 66 Query: 69 MVKKHASVDPLS-LHLAKLF--W--------------PGPLTLVLDLLSTT-----DIHP 106 ++ + S LS + ++F W P LT D L+ D+ Sbjct: 67 QLEPYISARELSVVQRERMFACWPGPVTFVVPVPPQTPRWLTGQFDSLAIRVSDHPDVQA 126 Query: 107 L----------STANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILS 156 L ++ANL + PC +++ + +G P + S G+++ + ++ ++S Sbjct: 127 LCRAFGKPLVSTSANLSG---QPPCRTAEEVKQQFGEPFPVLSGKTGGRLNPSEIRDVIS 183 Query: 157 SSICKE 162 + ++ Sbjct: 184 GELIRQ 189 >gi|170077858|ref|YP_001734496.1| YrdC domain-containing protein [Synechococcus sp. PCC 7002] gi|169885527|gb|ACA99240.1| yrdC domain protein [Synechococcus sp. PCC 7002] Length = 197 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 83/190 (43%), Gaps = 22/190 (11%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH---ASVDP 78 G ++ PT+TV LA P A +Y++K+R PLI + + + + + + Sbjct: 16 GQVVSFPTDTVPALAA---QPDAAPLIYQLKRRSPDKPLILMTASLPEIWDYVVGSETEK 72 Query: 79 LSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLA 136 +A+ +WPG LTLVL ++ N T RVP + ++ G PLA Sbjct: 73 AQWQAIAQQYWPGALTLVLPASEKVSAA-MNPTNSGTIGVRVPDLALAQGILRETG-PLA 130 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLI------IDGGISKIGL-ESTIVNVQCEKKV 189 SANRSG + + ++I KE P I SKIG + + V Sbjct: 131 TTSANRSGSDPLEWM-----AAIAKEFPEIPVLDCTTQERTSKIGSGQPSTVAQWTGSGW 185 Query: 190 RILRPGGLEI 199 RILR G + + Sbjct: 186 RILRQGAVSL 195 >gi|291287679|ref|YP_003504495.1| SUA5/yciO/yrdC domain protein [Denitrovibrio acetiphilus DSM 12809] gi|290884839|gb|ADD68539.1| SUA5/yciO/yrdC domain protein [Denitrovibrio acetiphilus DSM 12809] Length = 201 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 78/170 (45%), Gaps = 6/170 (3%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I +NA+ L P+ T+T+YG+ + + ++++IK R P Sbjct: 1 MLIAKAEGNNAIEIFRRALTKSEPVIFSTDTIYGIGAPVSDVKSNEKIFDIKGRDRTKPF 60 Query: 61 ICHVSDISMVKKHASVD-PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 +S + + + A ++ L + WP P+T +L + ++PL T N T R+ Sbjct: 61 PILISSLKQLSEIAIIESEKQLKALEEVWPAPVTFILK--AKKGLNPLFTIN-GTVAVRM 117 Query: 120 PC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 P + LI+T G P++ SAN SG+ + K ++ + K I I D Sbjct: 118 PDKKWLLNLIDTVG-PVSATSANLSGENYSNSEKAVIETFKSKIIFFIFD 166 >gi|218129310|ref|ZP_03458114.1| hypothetical protein BACEGG_00887 [Bacteroides eggerthii DSM 20697] gi|317475279|ref|ZP_07934545.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides eggerthii 1_2_48FAA] gi|217988487|gb|EEC54808.1| hypothetical protein BACEGG_00887 [Bacteroides eggerthii DSM 20697] gi|316908533|gb|EFV30221.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides eggerthii 1_2_48FAA] Length = 204 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 11/189 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSDISMV 70 L++ + L+ G I PT+T+Y + AI R+ ++K P N L D+S + Sbjct: 15 LQQVIDILNNGGIIIYPTDTMYAIGCHGLKERAIERICQLKAIDPKKNNLSIICYDLSSI 74 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 ++A D + L K PGP T + L+ T P N K R+P ++L Sbjct: 75 SEYAKFDNNTFKLMKRNLPGPFTFI---LNGTVRLPKIFRNRKEVGIRMPDNPIIQELAR 131 Query: 130 TYGHPLAIPS--ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 P+ + + I ++ + L+IDGGI G+ES+ + V C Sbjct: 132 FLDAPIMTTTLPYEENEDIEYCTDPELIDEKFGNIVDLVIDGGIG--GIESSTI-VDCTN 188 Query: 188 -KVRILRPG 195 + I+R G Sbjct: 189 GEAEIVRQG 197 >gi|325068851|ref|ZP_08127524.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces oris K20] Length = 205 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 51/186 (27%), Positives = 83/186 (44%), Gaps = 9/186 (4%) Query: 20 DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL 79 D GL +A PT++ Y LA N + R+ I++ + +D V A V Sbjct: 26 DGGL-VAYPTDSGYALACAPGNKEGLDRIRTIRQLDGKHNFTFVCADFGQVGPLAIVGNN 84 Query: 80 SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK--TACFRVPC-GFTKKLIETYGHPLA 136 + L K PGP T +L T D+ P T N K T R+P T+ L+ +G P+ Sbjct: 85 AFRLIKRLTPGPWTFILK--GTKDV-PRMTLNPKKHTLGVRIPDHAITQSLVAEFGAPIL 141 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 + R GQ + S+ I ++I+G + + G +T+V++ + +LR G Sbjct: 142 SSTFIRPGQEEPETNGWEIQDSLGHLIDVVIEGPVGQ-GEPTTVVDL-TDDVPEVLREGA 199 Query: 197 LEIETL 202 +I L Sbjct: 200 GDISLL 205 >gi|158338241|ref|YP_001519418.1| Sua5/YciO/YrdC/YwlC family protein [Acaryochloris marina MBIC11017] gi|158308482|gb|ABW30099.1| Sua5/YciO/YrdC/YwlC family protein [Acaryochloris marina MBIC11017] Length = 220 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 53/192 (27%), Positives = 86/192 (44%), Gaps = 16/192 (8%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81 G + PT+TVY + D A++R+ +IK+ PL S +S + ++A V + Sbjct: 27 GAVMLYPTDTVYAIGCDINAKAAVQRVRQIKQMSNDKPLTFLCSSLSNIAQYARVSDSAY 86 Query: 82 HLAKLFWPGPLTLVLDLLSTTDIHPLSTAN--LKTACFRVPCG-FTKKLIETYGHPLAIP 138 + + PGP T LL T + P N KT RVP L+++ P+ Sbjct: 87 KIMRKLIPGPYTF---LLPATKLVPKLVQNPKRKTTGIRVPDHPVCLSLLDSLATPIIST 143 Query: 139 SANRSGQISITNVKHI--------LSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 SA+ S Q S+ L K++ LII+ G STI+++ C+ + Sbjct: 144 SAHFSDQESVHGWSKKQEPLTPVELFDHFDKQVDLIIENGQDLSTKVSTILDL-CQDQPA 202 Query: 191 ILRPGGLEIETL 202 ++R GL +TL Sbjct: 203 VVR-EGLGWDTL 213 >gi|311742467|ref|ZP_07716276.1| Sua5/YciO/YrdC/YwlC family protein [Aeromicrobium marinum DSM 15272] gi|311314095|gb|EFQ84003.1| Sua5/YciO/YrdC/YwlC family protein [Aeromicrobium marinum DSM 15272] Length = 207 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 45/192 (23%), Positives = 85/192 (44%), Gaps = 9/192 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN--PLICHVSDISM 69 + +A E + +G IA PT++ Y L + A+ R+ I+ + L+CH D + Sbjct: 17 VEQAVEIIRSGGLIAYPTDSGYALGAQIGSADALTRIRSIRDLDDKHHFTLVCH--DFAQ 74 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKL 127 + VD K PGP T +L +T ++ L A +T R+P T+ L Sbjct: 75 LGHVVQVDNAVFRAVKAATPGPYTFILP--ATREVPKRLLQAKKRTVGVRIPDHVVTQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + G+ ++ ++ I ++D G +G +T+V++ + Sbjct: 133 VTALGEPLLSSTLILPGETDPMTTAWEIAEALDGRIEAVVDAGDEVVGRPTTVVDL-SDG 191 Query: 188 KVRILRPGGLEI 199 ++LR G ++ Sbjct: 192 HAQVLREGAGDV 203 >gi|325274080|ref|ZP_08140224.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas sp. TJI-51] gi|324100791|gb|EGB98493.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas sp. TJI-51] Length = 201 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 44/178 (24%), Positives = 76/178 (42%), Gaps = 5/178 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +R+A E + G + PT++ Y L + AI R+ ++ + D+S + Sbjct: 9 IRQAVEIIRKGGVVVYPTDSAYALGCQIGDKAAIERVRRLRGLDKTHNFTLMCCDMSQLG 68 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKKLIE 129 +A VD + L K PGP T +L+ T ++ L +T RVP T L+ Sbjct: 69 LYAKVDTGTFRLLKAHVPGPYTFILN--GTREVPRLLLHEKRRTIGLRVPDHAITLALLA 126 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 G PL S G + + + + L+IDGG + STI+++ ++ Sbjct: 127 ELGEPLMSVSLILPGDNEPMTDPYEIRERLEHHVDLVIDGGYGDLK-ASTIIDLSGDE 183 >gi|89092294|ref|ZP_01165248.1| hypothetical protein MED92_05763 [Oceanospirillum sp. MED92] gi|89083382|gb|EAR62600.1| hypothetical protein MED92_05763 [Oceanospirillum sp. MED92] Length = 191 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 46/194 (23%), Positives = 82/194 (42%), Gaps = 8/194 (4%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M ++ D + ++ + G IA PTE V+GL D N A+ +L +IK+RP L Sbjct: 1 MSSINNADWWHIHQSVRAIRQGGVIAYPTEAVWGLGCDPYNEDAVLKLLDIKRRPMHKGL 60 Query: 61 I---CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 + ++S I + + S D A WPGP T +L I + Sbjct: 61 VLVAANLSQIDFLLEDLSQDEYDKVTAN--WPGPFTWILP-DKKNRIPAWIKGDYSAVAV 117 Query: 118 RVPCGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 RV + + L E YG + SAN + + + + ++I ++ G + Sbjct: 118 RVSAHSSVRNLTEAYGSFIVSTSANPAAHEPARDSLRV-KTYFGEKIDYLLHGELGDSAQ 176 Query: 177 ESTIVNVQCEKKVR 190 + I +++ ++ VR Sbjct: 177 PTQIRDLKSDRLVR 190 >gi|110637486|ref|YP_677693.1| translation factor SUA5 [Cytophaga hutchinsonii ATCC 33406] gi|110280167|gb|ABG58353.1| translation factor SUA5 [Cytophaga hutchinsonii ATCC 33406] Length = 208 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 48/197 (24%), Positives = 84/197 (42%), Gaps = 8/197 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSDIS 68 N + A E + G + PT+TVY + D N A+ R+ +K +P L D+S Sbjct: 16 NKILTAVEIIRKGGIVIYPTDTVYAIGCDIHNQKAVERVCRLKNIQPGKINLSFICQDLS 75 Query: 69 MVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + ++ P + K PGP T +L+ + ++ + KT RVP + Sbjct: 76 HISEYTKALPTQVFKVMKQVLPGPYTFILN--ANNNVPNILNTKKKTIGIRVPDNRIVQL 133 Query: 127 LIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 L++ G+P+ S +I T + + +IIDGG G E++ + Sbjct: 134 LLKELGNPILSTSIKNEDEILEYTTDPEEIYERYKNVVDVIIDGGFG--GNEASTILDCT 191 Query: 186 EKKVRILRPGGLEIETL 202 ++ ++R G IE L Sbjct: 192 GNEIEVIREGKGSIEEL 208 >gi|148358974|ref|YP_001250181.1| translation factor [Legionella pneumophila str. Corby] gi|296107023|ref|YP_003618723.1| putative translation factor [Legionella pneumophila 2300/99 Alcoy] gi|148280747|gb|ABQ54835.1| translation factor [Legionella pneumophila str. Corby] gi|295648924|gb|ADG24771.1| putative translation factor [Legionella pneumophila 2300/99 Alcoy] Length = 206 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 59/200 (29%), Positives = 89/200 (44%), Gaps = 18/200 (9%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTA---IRRLYEIKKRPAMNPLICHVSDIS 68 LRKA ++ G I PT++ Y L N +A IRRL ++ K M L+C D+S Sbjct: 17 LRKAVSIIEEGGLIVYPTDSGYALGCSLGNKSALERIRRLRQLDKHHNMT-LVCR--DLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FT 124 + +A V L K F PG T +L+ +HP +T RVP T Sbjct: 74 QLGTYAKVSNPIFRLLKAFTPGSYTFILNATHEVPRLMLHP----KRRTLGLRVPDNTIT 129 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNV 183 L+E PL + G + + + + +I LIIDGG G E +T+V++ Sbjct: 130 LSLLECLEAPLMSTTLILPGAEAPLSEPEAIKDLLGNQIDLIIDGG--NCGHEPTTVVDL 187 Query: 184 QCEKKVRILRPGGLEIETLK 203 + V I+R G + E + Sbjct: 188 TGDYPV-IIREGKGDPEPFR 206 >gi|26991184|ref|NP_746609.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas putida KT2440] gi|24986231|gb|AAN70073.1|AE016647_3 Sua5/YciO/YrdC/YwlC family protein [Pseudomonas putida KT2440] Length = 221 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 43/178 (24%), Positives = 78/178 (43%), Gaps = 5/178 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E + G + PT++ Y L + +AI R+ ++ + D+S + Sbjct: 29 IKQAVEIIRKGGVVVYPTDSAYALGCQIGDKSAIERVRRLRGLDKTHNFTLMCCDMSQLG 88 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTAN-LKTACFRVP-CGFTKKLIE 129 +A VD + L K PGP T +L+ T ++ L + +T RVP T L+ Sbjct: 89 LYAKVDTGTFRLLKAHVPGPYTFILN--GTREVPRLLLHDKRRTIGLRVPDHAITLALLA 146 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 G PL S G + + + + L+IDGG + STI+++ ++ Sbjct: 147 ELGEPLMSVSLILPGDSEPMTDPYEIRERLEHHVDLVIDGGFGDLK-ASTIIDLSGDE 203 >gi|297518505|ref|ZP_06936891.1| hypothetical protein EcolOP_12763 [Escherichia coli OP50] Length = 175 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 4/161 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E + G I PT++ Y L + A+ R+ I++ P + D+S + Sbjct: 17 INQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 ++ VD ++ L K PG T +L T ++ L KT RVP + L+E Sbjct: 77 TYSFVDNVAFRLMKNNTPGNYTFILK--GTKEVPRRLLQEKRKTIGMRVPSNPIAQALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 G P+ S G + + + K++ LII GG Sbjct: 135 ALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGG 175 >gi|302536945|ref|ZP_07289287.1| Sua5/YciO/YrdC/YwlC [Streptomyces sp. C] gi|302445840|gb|EFL17656.1| Sua5/YciO/YrdC/YwlC [Streptomyces sp. C] Length = 215 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 56/211 (26%), Positives = 87/211 (41%), Gaps = 31/211 (14%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 LR+A + G + +PT+T+YG+ D+ + A+ L K R P + + Sbjct: 15 TGLREAASAVRRGELVVLPTDTLYGIGADAFSAEAVGDLLAAKGRGRNMPTPVLIGSPNT 74 Query: 70 VKKHASVDPLS---LHLAKLFWPGPLTLV--------LDLLSTTDIHPLSTANLKTACFR 118 + H V S L FWPG LTLV DL T T R Sbjct: 75 L--HGLVTDFSEQAWELVDAFWPGGLTLVAKHQPSLAWDLGETR----------GTVAVR 122 Query: 119 VPCGFTKKLIETYGHPLAIPSANRSGQISITN---VKHILSSSICKEIPLIIDGGISKIG 175 +P + T P+A+ SAN SG + + + +L S+ + +DGG + Sbjct: 123 MPLHPVAIELLTEVGPMAVSSANLSGHPAPADCDAAREMLGDSVS----VYLDGGPTPST 178 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAI 206 S+IV+V + V +LR G L L+ + Sbjct: 179 EPSSIVDVTGKVPV-LLREGALSAAQLREVV 208 >gi|300718668|ref|YP_003743471.1| hypothetical protein [Erwinia billingiae Eb661] gi|299064504|emb|CAX61624.1| Conserved uncharacterized protein [Erwinia billingiae Eb661] Length = 200 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 40/126 (31%), Positives = 62/126 (49%), Gaps = 10/126 (7%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 IA PTE V+GL + + +A+ L +K+RP LI ++ + ++ + +D L L A Sbjct: 33 IAYPTEAVFGLGCNPDSESAVMALLALKQRPVEKGLILIAANYAQLQPY--IDDLGLTDA 90 Query: 85 ---KLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIP 138 K+F WPGP+T V+ S T T + RV ++L +G PL Sbjct: 91 QKEKMFASWPGPVTWVMP--SRTSTPRWLTGRFDSLAVRVTDHPDVQRLCLGFGKPLVST 148 Query: 139 SANRSG 144 SAN +G Sbjct: 149 SANLTG 154 >gi|152997398|ref|YP_001342233.1| Sua5/YciO/YrdC/YwlC family protein [Marinomonas sp. MWYL1] gi|150838322|gb|ABR72298.1| Sua5/YciO/YrdC/YwlC family protein [Marinomonas sp. MWYL1] Length = 210 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 47/188 (25%), Positives = 76/188 (40%), Gaps = 10/188 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E + G IA PT+ Y L + A+ R+ I++ + D+S + Sbjct: 21 VKQAAEVIRNGGVIAYPTDCGYSLGCHLGDKDALDRIRAIRRLDDKHNFTLVCRDLSEIS 80 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVP-CGFTKKL 127 +A D L K PGP T + S +HP KT RVP L Sbjct: 81 TYARFDNRLYRLLKNNTPGPYTFIFSATSEVPRRLLHP----KRKTIGIRVPNNNIVSAL 136 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G P+ S G+ + + ++ + L+IDGG GL+ T V Sbjct: 137 LEELGEPIMSSSLILPGETDPMTDPYDIRDTLEHALDLVIDGGFC--GLQPTTVVKMDAD 194 Query: 188 KVRILRPG 195 + ++R G Sbjct: 195 SIEVVRVG 202 >gi|270160110|ref|ZP_06188766.1| Sua5/YciO/YrdC/YwlC family protein [Legionella longbeachae D-4968] gi|289165112|ref|YP_003455250.1| translation factor [Legionella longbeachae NSW150] gi|269988449|gb|EEZ94704.1| Sua5/YciO/YrdC/YwlC family protein [Legionella longbeachae D-4968] gi|288858285|emb|CBJ12153.1| putative translation factor [Legionella longbeachae NSW150] Length = 206 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 60/200 (30%), Positives = 89/200 (44%), Gaps = 18/200 (9%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTA---IRRLYEIKKRPAMNPLICHVSDIS 68 LRKA ++ G I PT++ Y L N +A IRRL ++ K M L+C D+S Sbjct: 17 LRKAVNIIEDGGIIVYPTDSGYALGCGLGNKSALERIRRLRQLDKNHNMT-LVCR--DLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FT 124 + +A V L K F PG T +L+ +HP KT RVP T Sbjct: 74 QLGLYARVSNPIFRLLKAFTPGAYTFILNATHEVPRLMLHP----KRKTLGLRVPDNVIT 129 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNV 183 L+E PL + G + + + + +I L+IDGG G E +T+V++ Sbjct: 130 LALLECLEAPLMSTTLILPGAKAPLSEPEAIRDLLGNQIDLVIDGG--HCGQEPTTVVDL 187 Query: 184 QCEKKVRILRPGGLEIETLK 203 + V I+R G + E K Sbjct: 188 TGDYPV-IIREGKGDPEPFK 206 >gi|325269063|ref|ZP_08135684.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella multiformis DSM 16608] gi|324988684|gb|EGC20646.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella multiformis DSM 16608] Length = 189 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 2/90 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV-SDI 67 + +RKA E + G I PT+TV+G+ D+ N A+ ++Y +K+R LIC V SD Sbjct: 4 EDDIRKAIEVMRKGGIILYPTDTVWGIGCDATNAEAVAKVYALKRRDDSKALICLVDSDD 63 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLD 97 + + +V ++ L P TL+LD Sbjct: 64 RLQRYVRNVPDVAWQLIDAV-ERPTTLILD 92 >gi|313497709|gb|ADR59075.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas putida BIRD-1] Length = 209 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 43/178 (24%), Positives = 78/178 (43%), Gaps = 5/178 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E + G + PT++ Y L + +AI R+ ++ + D+S + Sbjct: 17 IKQAVEIIRKGGVVVYPTDSAYALGCQIGDKSAIERVRRLRGLDKTHNFTLMCCDMSQLG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTAN-LKTACFRVP-CGFTKKLIE 129 +A VD + L K PGP T +L+ T ++ L + +T RVP T L+ Sbjct: 77 LYAKVDTGTFRLLKAHVPGPYTFILN--GTREVPRLLLHDKRRTIGLRVPDHAITLALLA 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 G PL S G + + + + L+IDGG + STI+++ ++ Sbjct: 135 ELGEPLMSVSLILPGDSEPMTDPYEIRERLEHHVDLVIDGGFGDLK-ASTIIDLSGDE 191 >gi|120552989|ref|YP_957340.1| SUA5/yciO/yrdC domain-containing protein [Marinobacter aquaeolei VT8] gi|212288209|sp|A1TWN4|RIMN_MARAV RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|120322838|gb|ABM17153.1| translation factor SUA5 [Marinobacter aquaeolei VT8] Length = 190 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 68/155 (43%), Gaps = 8/155 (5%) Query: 21 AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80 AG IA PTE V+GL D N A+ + E+K+RP +I + + V+ +DPL Sbjct: 21 AGGVIAYPTEAVWGLGCDPWNREAVEYILELKQRPMEKGVILVAASVEQVR--FLLDPLP 78 Query: 81 LHL---AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAI 137 + A WPGP+T +L ++ + + A + L E G PL Sbjct: 79 DAVQSEALRHWPGPVTCLLPDVNQQVPEWVRGKHSSIAVRVSDHPVVRALCEATGMPLVS 138 Query: 138 PSANRSGQI---SITNVKHILSSSICKEIPLIIDG 169 S N +G+ +I V+ I + +P + G Sbjct: 139 TSCNPAGRQPARAIWQVRRYFGDRIDRIVPGALGG 173 >gi|53803488|ref|YP_114629.1| Sua5/YciO/YrdC/YwlC family protein [Methylococcus capsulatus str. Bath] gi|53757249|gb|AAU91540.1| Sua5/YciO/YrdC/YwlC family protein [Methylococcus capsulatus str. Bath] Length = 207 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 51/196 (26%), Positives = 86/196 (43%), Gaps = 10/196 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN--PLICHVSDISM 69 +R+A E + G I PT++ Y A+ R+ I++ + LICH D+S Sbjct: 17 IRQAAEIVRQGGVIVYPTDSSYAFGCQLDRKDALHRIRTIRQLDEEHNFTLICH--DLSQ 74 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKKL 127 V A ++ + L K PGP T +L+ +T ++ L KT R+P ++ L Sbjct: 75 VSAFARINNEAFRLIKTLTPGPYTFLLE--ATREVPRRLQHPKRKTIGIRLPDNAVSQML 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + G+ + + + LI+ G+ E+TIV++ E Sbjct: 133 VAELGEPLFSSTLILPGETEGLADPEDIRERVGTRVELILAAGVIPFA-ETTIVDLTGEF 191 Query: 188 KVRILRPGGLEIETLK 203 V I+R G I L+ Sbjct: 192 PV-IVRQGKGSIGFLR 206 >gi|333007604|gb|EGK27082.1| yrdC domain protein [Shigella flexneri K-272] gi|333019538|gb|EGK38818.1| yrdC domain protein [Shigella flexneri K-227] Length = 206 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 4/161 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E + G I PT++ Y L + A+ R+ I++ P + D+S + Sbjct: 17 INQAVEIVRKGGVIVYPTDSGYALGCKVEDKNAMERICRIRQLPDGHNFTLMCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 ++ VD ++ L K PG T +L T ++ L KT RVP + L+E Sbjct: 77 TYSFVDNVAFRLMKNNTPGSYTFILK--GTKEVPRRLLQEKRKTIGMRVPSNPIAQALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 G P+ S G + + + K++ LII GG Sbjct: 135 ALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGG 175 >gi|261342752|ref|ZP_05970610.1| Sua5/YciO/YrdC/YwlC family protein [Enterobacter cancerogenus ATCC 35316] gi|288314931|gb|EFC53869.1| Sua5/YciO/YrdC/YwlC family protein [Enterobacter cancerogenus ATCC 35316] Length = 190 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 58/137 (42%), Gaps = 6/137 (4%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH---ASVDPLSL 81 IA PTE V+G+ D + A+ RL +K+RP LI ++ +K + A + P Sbjct: 23 IAYPTEAVFGVGCDPDSEKAVSRLLALKQRPVEKGLILIAANYEQLKPYIDDAMLTPAQR 82 Query: 82 HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140 WPGP+T V TT T + RV +L +G PL SA Sbjct: 83 ETIFSAWPGPVTFVFPAQPTTPR--WLTGRFDSLAVRVTDHPLVVELCLAFGKPLVSTSA 140 Query: 141 NRSGQISITNVKHILSS 157 N +G + +L+ Sbjct: 141 NLTGLPPCRTTEEVLAQ 157 >gi|254483308|ref|ZP_05096539.1| putative yrdC domain protein [marine gamma proteobacterium HTCC2148] gi|214036403|gb|EEB77079.1| putative yrdC domain protein [marine gamma proteobacterium HTCC2148] Length = 188 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 55/131 (41%), Gaps = 22/131 (16%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 +A PTE V+GL+ D + A+ RL IK R D ++ ASV+ L LA Sbjct: 23 VACPTEAVWGLSCDPDSEQAVSRLLAIKGRSV---------DKGLILVAASVEQLGFLLA 73 Query: 85 KL----------FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133 L WPGP T ++ + P +T RV + L E +G Sbjct: 74 DLSQAQKQQLSASWPGPNTWLVP--HQQRVQPWVHGRFETVAVRVSQHPVVRSLCEAWGG 131 Query: 134 PLAIPSANRSG 144 PL SAN +G Sbjct: 132 PLVSTSANPAG 142 >gi|91069910|gb|ABE10839.1| conserved hypothetical protein [uncultured Prochlorococcus marinus clone ASNC2150] Length = 193 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 55/194 (28%), Positives = 85/194 (43%), Gaps = 12/194 (6%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC----HVSDIS 68 + A + L +GLPI PT+T+ + P +YE KKR PLI H I Sbjct: 7 KSALKTLKSGLPIIFPTDTLPAIGC---LPKFSNIIYEFKKRDRDKPLILMGSEHKQLID 63 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128 V + A D ++A +WPG LT+V+ ++ + T+N T R+P + + + Sbjct: 64 YVHESAKED--YENIASKYWPGALTMVIP--ASEKQTTILTSNDLTLGLRIPNSYMAQSL 119 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 PL SAN SG V+ I +I I G + G STI+ + Sbjct: 120 MRETGPLLTSSANISGFKGSITVEGIALDFPTLKILGPIPWG-KRSGKASTIIFWKKSGD 178 Query: 189 VRILRPGGLEIETL 202 R++R G + + L Sbjct: 179 WRLIRQGEVLVREL 192 >gi|260062809|ref|YP_003195889.1| putative Sua5/yciO/yrdC family protein [Robiginitalea biformata HTCC2501] gi|88784377|gb|EAR15547.1| putative Sua5/yciO/yrdC family protein [Robiginitalea biformata HTCC2501] Length = 207 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 50/180 (27%), Positives = 77/180 (42%), Gaps = 14/180 (7%) Query: 11 ALRKACE-FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK---RPAMNPLICHVSD 66 A+R+ E F D GL I PT+TVYGL D N A+ RL IK A IC D Sbjct: 16 AVRQVVEAFRDGGLVI-YPTDTVYGLGCDITNSRALERLARIKGVKLHKANWSFICE--D 72 Query: 67 ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 +S + + +D + + K PGP T + L + P KT RVP Sbjct: 73 LSNLSDYVRQIDTQTFKILKRALPGPYTFI---LPGNNNLPRDFKKKKTVGIRVPDNRIA 129 Query: 125 KKLIETYGHPLAIPS-ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 L+ G P+ S + + T ++ + +++DGG + ST++++ Sbjct: 130 HALVAGLGRPIVSTSIRDEDDVLEYTTDPELIYEKWENLVDVVVDGGYGG-NVASTVIDL 188 >gi|325335186|gb|ADZ11460.1| Sua5A [Riemerella anatipestifer RA-GD] Length = 466 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 54/197 (27%), Positives = 86/197 (43%), Gaps = 13/197 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK---RPAMNPLICHVS 65 N +++ + LD G I P++TVY L D N A+ +L +KK A +IC + Sbjct: 277 ENLIKEVIKTLDNGGLIIYPSDTVYALGCDINNIKAMEKLAALKKIKLEKAHFSIIC--N 334 Query: 66 DISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 D+S + +D L K PG T +L+ PL+ KT RVP Sbjct: 335 DLSHLSSFTKPIDNSVFRLLKSHIPGAFTFILEANKNL---PLAYKGHKTVGIRVPDHPI 391 Query: 125 KKLI-ETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 +LI E G P+A S + I + +++ + ++ID G + STIV+ Sbjct: 392 PQLIVEKLGRPIASTSIKDDDEIIEYSTDPELIAEKYDHLVDIVIDSGYGD-NVASTIVD 450 Query: 183 VQCEKKVRILRPGGLEI 199 + I+R G E+ Sbjct: 451 L-TSGVAEIIRQGKGEL 466 >gi|284921148|emb|CBG34214.1| conserved hypothetical protein [Escherichia coli 042] gi|323964604|gb|EGB60077.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli M863] gi|323977102|gb|EGB72189.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli TW10509] gi|327253957|gb|EGE65586.1| yrdC domain protein [Escherichia coli STEC_7v] Length = 206 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 79/186 (42%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E + G I PT++ Y L + A+ R+ I++ P + D+S + Sbjct: 17 INQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 ++ VD ++ L K PG T +L T ++ L KT RVP + L+E Sbjct: 77 TYSFVDNVAFRLMKNNTPGNYTFILK--GTKEVPRRLLQEKRKTIGMRVPSNPIAQALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G P+ S G + + + K++ LII GG +G + T V + Sbjct: 135 ALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGGY--LGQKPTTVIDLTDDTP 192 Query: 190 RILRPG 195 +LR G Sbjct: 193 VVLREG 198 >gi|309789073|ref|ZP_07683668.1| yrdC domain protein [Shigella dysenteriae 1617] gi|308923344|gb|EFP68856.1| yrdC domain protein [Shigella dysenteriae 1617] Length = 206 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 4/161 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E + G I PT++ Y L + A+ R+ I++ P + D+S + Sbjct: 17 INQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAVERICRIRQLPDGHNFTLMCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 ++ VD ++ L K PG T +L T ++ L KT RVP + L+E Sbjct: 77 TYSFVDNVAFRLMKNNTPGNYTFILK--GTKEVPRRLLQEKRKTIGMRVPSNPIAQALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 G P+ S G + + + K++ LII GG Sbjct: 135 ALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGG 175 >gi|77165846|ref|YP_344371.1| putative translation factor, Sua5/YciO/YrdC/YwlC [Nitrosococcus oceani ATCC 19707] gi|254433299|ref|ZP_05046807.1| Sua5/YciO/YrdC/YwlC family protein [Nitrosococcus oceani AFC27] gi|76884160|gb|ABA58841.1| translation factor SUA5 [Nitrosococcus oceani ATCC 19707] gi|207089632|gb|EDZ66903.1| Sua5/YciO/YrdC/YwlC family protein [Nitrosococcus oceani AFC27] Length = 209 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 51/187 (27%), Positives = 80/187 (42%), Gaps = 8/187 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +A FL I PT++ Y L N A R+ +++ + D+S + Sbjct: 17 LNQAVNFLQQEGLIVYPTDSGYALGCRVGNKAAADRIRQLRGLGNRHEFSLVSRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A V + L K PG T + +T ++ L +T RVP T+ L+ Sbjct: 77 LYAKVGNSAFRLLKALTPGAYTFIFK--ATREVPRRLQDPKRRTIGIRVPDNTVTQALLA 134 Query: 130 TYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 T G PL + G+ I +T+ + I I ++ LIIDGG G E T V E Sbjct: 135 TLGEPLISSTLLLPGEDIPLTDPEEI-RDRIGSQVDLIIDGGYC--GFEPTTVVDLVEDM 191 Query: 189 VRILRPG 195 +++R G Sbjct: 192 PKVIREG 198 >gi|82776624|ref|YP_402973.1| hypothetical protein SDY_1335 [Shigella dysenteriae Sd197] gi|81240772|gb|ABB61482.1| conserved hypothetical protein [Shigella dysenteriae Sd197] Length = 218 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 4/161 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E + G I PT++ Y L + A+ R+ I++ P + D+S + Sbjct: 29 INQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAVERICRIRQLPDGHNFTLMCRDLSELS 88 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 ++ VD ++ L K PG T +L T ++ L KT RVP + L+E Sbjct: 89 TYSFVDNVAFRLMKNNTPGNYTFILK--GTKEVPRRLLQEKRKTIGMRVPSNPIAQALLE 146 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 G P+ S G + + + K++ LII GG Sbjct: 147 ALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGG 187 >gi|302878814|ref|YP_003847378.1| Sua5/YciO/YrdC/YwlC family protein [Gallionella capsiferriformans ES-2] gi|302581603|gb|ADL55614.1| Sua5/YciO/YrdC/YwlC family protein [Gallionella capsiferriformans ES-2] Length = 209 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 44/186 (23%), Positives = 84/186 (45%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A L G + PT++ Y L + A+ R+ EI++ + L D+S + Sbjct: 17 IKQAVSILKDGGIVVYPTDSCYALGCLLDDKNAVSRIREIRQLDDEHYLTLMCRDLSEIS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD L K PG T +L+ +T ++ L T R+P L+E Sbjct: 77 NYARVDNAQFRLLKANTPGSYTFILE--ATREVPKRLQHPKRSTIGIRIPDHPVALALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G P++ + ++ N + + K++ +IDGG + + +T++++ E V Sbjct: 135 ELGEPMSSSTLILPDEVWPLNDAERIRELLEKKVDAVIDGGAAGVDF-TTVIDLTGEHPV 193 Query: 190 RILRPG 195 +LR G Sbjct: 194 -LLRQG 198 >gi|329904391|ref|ZP_08273785.1| hypothetical protein IMCC9480_2045 [Oxalobacteraceae bacterium IMCC9480] gi|327547995|gb|EGF32734.1| hypothetical protein IMCC9480_2045 [Oxalobacteraceae bacterium IMCC9480] Length = 207 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 48/184 (26%), Positives = 85/184 (46%), Gaps = 6/184 (3%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 +A E + G +A+PT++ Y L + A+ RL ++ + L D++ + + Sbjct: 19 QAAEIIHRGGIVAMPTDSSYALVCHLDDKDAVTRLRRLRGVDDKHLLTLLCRDLAEIALY 78 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIETY 131 A VD L K PG T++L+ +T ++ +S + KT RVP L+E Sbjct: 79 AKVDNKQYRLLKAATPGSYTMILE--ATKEVPRRISHPSRKTIGLRVPENKIALALLEQL 136 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 G PL + G + I K++ LIIDGG + +T+V++ ++ V + Sbjct: 137 GQPLLGTTLILPGDEHPLTDAESVRERIEKQVDLIIDGGACSLE-PTTVVDLSGDEPV-L 194 Query: 192 LRPG 195 +R G Sbjct: 195 IRAG 198 >gi|170768140|ref|ZP_02902593.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia albertii TW07627] gi|170122906|gb|EDS91837.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia albertii TW07627] Length = 218 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 4/161 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E + G I PT++ Y L + A+ R+ I++ P + D+S + Sbjct: 29 INQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELS 88 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 ++ VD ++ L K PG T +L T ++ L KT RVP + L+E Sbjct: 89 TYSFVDNVAFRLMKNNTPGNYTFILK--GTKEVPRRLLQEKRKTIGMRVPSNPIAQALLE 146 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 G P+ S G + + + K++ LII GG Sbjct: 147 ALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGG 187 >gi|33860877|ref|NP_892438.1| hypothetical protein PMM0319 [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33633819|emb|CAE18778.1| conserved hypothetical protein [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 194 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 60/206 (29%), Positives = 91/206 (44%), Gaps = 19/206 (9%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 M++ D + A E L++G PI T+T+ + P +Y+IKKR PLI Sbjct: 1 MNVIDQ---KLALEKLNSGSPIVFQTDTLPAIGCL---PKFSEMIYKIKKRDIKKPLILM 54 Query: 64 VSDISMVKK--HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 ++ H S ++A +WPGPLT+++ S ST+N T R+P Sbjct: 55 GAENFEFDDFVHESALGDFKYIASCYWPGPLTIIIP-CSEKRRSFSSTSNF-TLGLRIPN 112 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHIL----SSSICKEIPLIIDGGISKIGLE 177 KL+ PL SAN SG + T+ K I + +I IP G + Sbjct: 113 SKMAKLLLKESGPLLTSSANLSGLPTATSAKEISVNLPNVNILGPIPWEKCSGKA----- 167 Query: 178 STIVNVQCEKKVRILRPGGLEIETLK 203 STI+ K +I+R G + I +K Sbjct: 168 STIITWVNHGKWKIIREGEVSIPGIK 193 >gi|121606166|ref|YP_983495.1| Sua5/YciO/YrdC/YwlC family protein [Polaromonas naphthalenivorans CJ2] gi|120595135|gb|ABM38574.1| Sua5/YciO/YrdC/YwlC family protein [Polaromonas naphthalenivorans CJ2] Length = 211 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 69/160 (43%), Gaps = 2/160 (1%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +A E + G A+PT++ Y L + A L I+ + L D+S + Sbjct: 17 LAQAVELIQRGGIAAVPTDSSYALVCQLDDKAASDNLRRIRGVDGKHHLTLLCRDLSELA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIET 130 +A VD L K PGP T +L+ S LS + KT RVP T + L+E Sbjct: 77 NYARVDNKQFRLIKAATPGPYTFILE-ASKEVPRRLSHPSRKTIGLRVPDHKTLQALLEL 135 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 +G PL + G+ + ++ + E+ IID G Sbjct: 136 HGGPLLATTLIPRGETESISDPQDITGPLEHELAAIIDAG 175 >gi|313159480|gb|EFR58843.1| Sua5/YciO/YrdC/YwlC family protein [Alistipes sp. HGB5] Length = 193 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/157 (23%), Positives = 74/157 (47%), Gaps = 6/157 (3%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 +A + AG I PT+TV+GL D+ N A+ R+Y++K+ ++ + MV ++ Sbjct: 13 EAVRVMKAGGIILYPTDTVWGLGCDATNAEAVERIYKLKRSENKKSMLVLCASADMVVRY 72 Query: 74 ASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETY 131 + P ++ + +L PLT +L + +T R+P F ++++ Sbjct: 73 VNKAPGIAFEVMELA-TSPLTAILP--GAAGVAENLIPEERTLGVRIPDHEFCRRILRGL 129 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 G P+ SAN SG+ + + + S I + +++ Sbjct: 130 GRPVVSTSANISGEATPAGLAEV-SREIIDGVDFVVN 165 >gi|302780313|ref|XP_002971931.1| hypothetical protein SELMODRAFT_441705 [Selaginella moellendorffii] gi|300160230|gb|EFJ26848.1| hypothetical protein SELMODRAFT_441705 [Selaginella moellendorffii] Length = 303 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 51/195 (26%), Positives = 84/195 (43%), Gaps = 21/195 (10%) Query: 20 DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL 79 D G+ + +PT+T+Y + D N AI RLY IK A PL + K+ + P Sbjct: 95 DGGVGV-VPTDTIYAIVCDLHNRAAIERLYRIKDMDAKKPLSILCRSFQDIDKYTTGFPT 153 Query: 80 S-LHLAKLFWPGPLTLVLDLLSTTDIHPLST----------ANLKTACFRVP-CGFTKKL 127 S +A+ PGP T +L ++ D+ T A K+ R+P +++ Sbjct: 154 SFFRVARQCLPGPYTFILP--ASKDMPKQCTRFGGSVAASYAPRKSVGVRIPDDSVWREM 211 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILS-----SSICKEIPLIIDGGISKIGLESTIVN 182 HPL S R I++ SS + + I+DGG +++ ST+V+ Sbjct: 212 AGQLEHPLLCTSVRRPADDEWMLDPAIIADTYGVSSGRESVDFIVDGG-TRVANPSTVVD 270 Query: 183 VQCEKKVRILRPGGL 197 + V + R G+ Sbjct: 271 MTGTMPVVLRRGKGV 285 >gi|317050743|ref|YP_004111859.1| Sua5/YciO/YrdC/YwlC family protein [Desulfurispirillum indicum S5] gi|316945827|gb|ADU65303.1| Sua5/YciO/YrdC/YwlC family protein [Desulfurispirillum indicum S5] Length = 204 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 50/179 (27%), Positives = 82/179 (45%), Gaps = 23/179 (12%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-L 83 + PTET+YGL + + ++++K RP PL + V+++ + P L L Sbjct: 27 LCFPTETLYGLGGLATSQKVADEVFQVKGRPQGAPLPVLFAHRQQVERYLEI-PAELEVL 85 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-KLIET---YGHPLAIPS 139 + FWPGPLT+ L T P + L RV T +L++T Y P+ S Sbjct: 86 LEHFWPGPLTVAL-----TARVPFPSGVLDGKG-RVAARITSHRLLKTVIDYAGPMIATS 139 Query: 140 ANRSGQ---ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 ANRSG+ +S H+ +I + P S + ST++ + ++R+ R G Sbjct: 140 ANRSGEAPAMSAEACLHLQPDAIIMDDP-------STSSVPSTVIGWD-DGELRVYREG 190 >gi|319955258|ref|YP_004166525.1| translation factor sua5 [Cellulophaga algicola DSM 14237] gi|319423918|gb|ADV51027.1| translation factor SUA5 [Cellulophaga algicola DSM 14237] Length = 206 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 70/165 (42%), Gaps = 11/165 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTA---IRRLYEIKKRPAMNPLICHVSDIS 68 ++K L G I PT+TVYGL D N A I R+ IK A IC +D+S Sbjct: 17 IKKVINVLKKGGLIIYPTDTVYGLGCDITNTKALEKIARIKGIKLDKANWSFIC--ADLS 74 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126 + + +D + + K PGP T + L + P KT RVP K Sbjct: 75 NLSDYVRQIDTPTFKILKRALPGPYTFI---LPGNNNLPKEFKKKKTVGIRVPDNSIAKA 131 Query: 127 LIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGG 170 ++E G+P+ S ++ T ++ + ++IDGG Sbjct: 132 IVEALGNPIVSTSIRDEDEVLEYTTDPELIFEKWQNLVDIVIDGG 176 >gi|298208805|ref|YP_003716984.1| putative Sua5/yciO/yrdC family protein [Croceibacter atlanticus HTCC2559] gi|83848732|gb|EAP86601.1| putative Sua5/yciO/yrdC family protein [Croceibacter atlanticus HTCC2559] Length = 206 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 49/195 (25%), Positives = 84/195 (43%), Gaps = 13/195 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRR---LYEIKKRPAMNPLICHVSDIS 68 +++ L G + PT+TVYGL D N +A+ R L +K A IC D+S Sbjct: 17 IKQVVNALRDGALVIYPTDTVYGLGCDISNVSALERIAKLKNVKLEKANFSFICE--DLS 74 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126 + + +D + + K PGP T + L + P KT RVP Sbjct: 75 NLSDYVKQIDTRTFKILKRCLPGPYTFI---LPGNNNLPNVFKKKKTVGIRVPDNSICNA 131 Query: 127 LIETYGHPLAIPSA-NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 L+ G+P+ S + I T ++ K + ++IDGG + ST++++ Sbjct: 132 LVSGLGNPIISTSIRDEDDVIEYTTDPSLILEKWDKHVDIVIDGGYGD-NIASTVIDLTG 190 Query: 186 EKKVRILRPGGLEIE 200 + + ++R G +E Sbjct: 191 D-EAEVIREGKGSLE 204 >gi|220909107|ref|YP_002484418.1| Sua5/YciO/YrdC/YwlC family protein [Cyanothece sp. PCC 7425] gi|219865718|gb|ACL46057.1| Sua5/YciO/YrdC/YwlC family protein [Cyanothece sp. PCC 7425] Length = 221 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 57/195 (29%), Positives = 88/195 (45%), Gaps = 14/195 (7%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L AG + PT+TVY + D A++R+ +IK PL S +S + +A V Sbjct: 24 LRAGAVMLYPTDTVYAIGCDLNVKHAVQRVRQIKHLSNDKPLTFLCSSLSNIAHYAYVSD 83 Query: 79 LSLHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVPCG-FTKKLIETYGHPL 135 + L + PGP T LL T + P KT RVP + L+E+ G P+ Sbjct: 84 SAYRLMRSLVPGPYTF---LLPATKLVPRLAQEPKRKTTGIRVPDHPVCQSLLESLGSPV 140 Query: 136 AIPSANRSGQISITNVKHILSSS-----ICKEIPLIIDGGISKIGLE-STIVNVQCEKKV 189 I +A R + TN L S+ + + LI+D G K G + STI+++ V Sbjct: 141 -ISTAARLPEEEQTNESVELGSAELFDRFDRLVDLIVDNG-QKTGQQVSTILDLGATPPV 198 Query: 190 RILRPGGLEIETLKR 204 + + G E L++ Sbjct: 199 IVRKGLGWEALPLEK 213 >gi|167035000|ref|YP_001670231.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas putida GB-1] gi|166861488|gb|ABY99895.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas putida GB-1] Length = 221 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/178 (24%), Positives = 77/178 (43%), Gaps = 5/178 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E + G + PT++ Y L + AI R+ ++ + D+S + Sbjct: 29 IKQAVEIIRKGGVVVYPTDSAYALGCQMGDKNAIERVRRLRGLDKTHNFTLMCCDMSQLG 88 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTAN-LKTACFRVPCG-FTKKLIE 129 +A VD + L K PGP T +L+ T ++ L + +T RVP T L+ Sbjct: 89 LYAKVDTGTFRLLKAHVPGPYTFILN--GTREVPRLLLHDKRRTIGLRVPNHVITLALLA 146 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 G PL S G + + + + L+IDGG + STI+++ ++ Sbjct: 147 ELGEPLMSVSLILPGDSEPMTDPYEIRERLEHHVDLVIDGGFGDLK-ASTIIDLSGDE 203 >gi|300114807|ref|YP_003761382.1| Sua5/YciO/YrdC/YwlC family protein [Nitrosococcus watsonii C-113] gi|299540744|gb|ADJ29061.1| Sua5/YciO/YrdC/YwlC family protein [Nitrosococcus watsonii C-113] Length = 209 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 50/187 (26%), Positives = 80/187 (42%), Gaps = 8/187 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +A FL I PT++ Y L N A R+ +++ + D+S + Sbjct: 17 LNQAASFLRQEGLIVYPTDSGYALGCQVGNKAAADRIRQLRGLGNRHEFSLVSRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A V + L K PG T + +T ++ L +T RVP T+ L+ Sbjct: 77 LYAKVGNSAFRLLKALTPGAYTFIFK--ATREVPRRLQDPKRRTIGIRVPANTVTQALLT 134 Query: 130 TYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 T G PL + G+ I +T+ + I + ++ LIIDGG G E T V E Sbjct: 135 TLGEPLISSTLILPGEDIPLTDPEEI-RDRMGGQVDLIIDGGYC--GFEPTTVVDLVEDM 191 Query: 189 VRILRPG 195 +++R G Sbjct: 192 PKVIREG 198 >gi|239501228|ref|ZP_04660538.1| yrdC domain protein [Acinetobacter baumannii AB900] Length = 205 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/188 (24%), Positives = 80/188 (42%), Gaps = 10/188 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E + AG + PT+ Y + N A+ R+ +I+ + D+S + Sbjct: 16 IEQAVERIRAGDVVVYPTDAAYAIGCQIGNKNAMERIAQIRGLGPKHQYAIMCCDLSDIA 75 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127 +A VD + L K P T +L S +HP KT R+P + L Sbjct: 76 TYAKVDNATYRLLKANTPAITTFILSATSEVPRRLMHP----KKKTIGLRIPSNPICQAL 131 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ G PL + GQ + + + + + K I + IDGG + ++IV++ E Sbjct: 132 LKELGEPLLTSTLILPGQEDPLDDPYDIENQLAKRIDVFIDGGFGTL-TTTSIVDLSGEH 190 Query: 188 KVRILRPG 195 I+R G Sbjct: 191 P-EIIRRG 197 >gi|123965586|ref|YP_001010667.1| putative translation factor (SUA5) [Prochlorococcus marinus str. MIT 9515] gi|123199952|gb|ABM71560.1| Putative translation factor (SUA5) [Prochlorococcus marinus str. MIT 9515] Length = 193 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 53/199 (26%), Positives = 88/199 (44%), Gaps = 16/199 (8%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 A + A E L+ GLPI T+T+ + P +Y+IK+R PLI ++ + Sbjct: 5 ANKLAVEKLNIGLPIIFHTDTLPAIGCL---PKFSEIIYKIKQRDVKKPLILMGAESFQL 61 Query: 71 KK--HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128 + H + ++A +WPGPLT+++ + + PL + T R+P + Sbjct: 62 NEFVHKTAFEDYKYMASRYWPGPLTMIIPISEKS--KPLFSNKNLTLGLRIPNSIMANYL 119 Query: 129 ETYGHPLAIPSANRSGQISITNVKHIL----SSSICKEIPLIIDGGISKIGLESTIVNVQ 184 PL SAN SG TN K I + I +P G + STI++ Sbjct: 120 IKESGPLLTSSANISGLPPSTNAKDISFDLPNVDILGPVPWPKCSGKA-----STIISWV 174 Query: 185 CEKKVRILRPGGLEIETLK 203 +K +++R G + I +K Sbjct: 175 NNEKWKLIREGEVFIPGIK 193 >gi|29349536|ref|NP_813039.1| hypothetical protein BT_4128 [Bacteroides thetaiotaomicron VPI-5482] gi|253570092|ref|ZP_04847501.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|298385032|ref|ZP_06994591.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 1_1_14] gi|29341445|gb|AAO79233.1| putative Sua5/yciO/yrdC family protein [Bacteroides thetaiotaomicron VPI-5482] gi|251840473|gb|EES68555.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|298262176|gb|EFI05041.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 1_1_14] Length = 204 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 11/189 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSDISMV 70 L++ + L+ G I PT+T+Y + AI R+ IK P N L D+S + Sbjct: 15 LQRVTDILNDGGLIIYPTDTMYAIGCHGLKERAIERICRIKDIDPRKNNLSIICYDLSSI 74 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129 ++A V L K PGP T + L+ T+ P N K R+P +++ Sbjct: 75 SEYAKVGNNEFKLMKHNLPGPFTFI---LNGTNRLPKIFRNRKEVGIRMPDNNIIREIAR 131 Query: 130 TYGHPLAIPS--ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC-E 186 P+ + + + ++ + L+IDGGI G+E + V V+C E Sbjct: 132 LLDAPIMTTTLPYDEHEDLEYMTDPELIDEKFGDIVDLVIDGGIG--GIEPSTV-VKCTE 188 Query: 187 KKVRILRPG 195 + I+R G Sbjct: 189 DEPEIVRQG 197 >gi|90019673|ref|YP_525500.1| translation factor SUA5 [Saccharophagus degradans 2-40] gi|123396836|sp|Q21PU1|RIMN_SACD2 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|89949273|gb|ABD79288.1| translation factor SUA5 [Saccharophagus degradans 2-40] Length = 191 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 57/130 (43%), Gaps = 7/130 (5%) Query: 18 FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK--KHAS 75 L G+ IA PTE V+GL D N A+ ++ +KKRP LI + I + H Sbjct: 20 LLQGGV-IAYPTEAVWGLGCDPDNDHAVEKILRLKKRPVHKGLILVAASIEQLDFLLH-D 77 Query: 76 VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134 ++P + WPG T ++ + P+ T T RV K L E +G P Sbjct: 78 LEPEYYQKLEASWPGANTWLIP--HKGRVSPMVTGKHATVAVRVSNHPIVKALCEGFGGP 135 Query: 135 LAIPSANRSG 144 + SAN G Sbjct: 136 IVSTSANPMG 145 >gi|15801912|ref|NP_287932.1| hypothetical protein Z2543 [Escherichia coli O157:H7 EDL933] gi|24112666|ref|NP_707176.1| hypothetical protein SF1270 [Shigella flexneri 2a str. 301] gi|26247596|ref|NP_753636.1| hypothetical protein c1732 [Escherichia coli CFT073] gi|30062790|ref|NP_836961.1| hypothetical protein S1355 [Shigella flexneri 2a str. 2457T] gi|74312363|ref|YP_310782.1| hypothetical protein SSON_1876 [Shigella sonnei Ss046] gi|82544279|ref|YP_408226.1| hypothetical protein SBO_1799 [Shigella boydii Sb227] gi|91210558|ref|YP_540544.1| hypothetical protein UTI89_C1535 [Escherichia coli UTI89] gi|110805270|ref|YP_688790.1| hypothetical protein SFV_1280 [Shigella flexneri 5 str. 8401] gi|117623527|ref|YP_852440.1| hypothetical protein APECO1_427 [Escherichia coli APEC O1] gi|162139712|ref|NP_309866.3| hypothetical protein ECs1839 [Escherichia coli O157:H7 str. Sakai] gi|170681810|ref|YP_001743920.1| hypothetical protein EcSMS35_1866 [Escherichia coli SMS-3-5] gi|187776059|ref|ZP_02800082.2| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4196] gi|188025120|ref|ZP_02776177.2| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4113] gi|189010692|ref|ZP_02808776.2| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4076] gi|189403568|ref|ZP_02796272.2| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4486] gi|189404340|ref|ZP_02788593.2| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4501] gi|189405385|ref|ZP_02815073.2| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC869] gi|189406137|ref|ZP_02826620.2| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC508] gi|191171102|ref|ZP_03032653.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli F11] gi|193062588|ref|ZP_03043682.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli E22] gi|194425821|ref|ZP_03058377.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli B171] gi|194436951|ref|ZP_03069050.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli 101-1] gi|208810838|ref|ZP_03252671.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4206] gi|208815519|ref|ZP_03256698.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4045] gi|208819462|ref|ZP_03259782.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4042] gi|209400954|ref|YP_002270321.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4115] gi|217329124|ref|ZP_03445204.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. TW14588] gi|227886305|ref|ZP_04004110.1| RNA binding protein [Escherichia coli 83972] gi|237705290|ref|ZP_04535771.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|291282354|ref|YP_003499172.1| hypothetical protein G2583_1606 [Escherichia coli O55:H7 str. CB9615] gi|331641825|ref|ZP_08342960.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli H736] gi|331646588|ref|ZP_08347691.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli M605] gi|331652304|ref|ZP_08353323.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli M718] gi|331672792|ref|ZP_08373578.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli TA280] gi|331677045|ref|ZP_08377741.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli H591] gi|332279543|ref|ZP_08391956.1| yciO [Shigella sp. D9] gi|12515530|gb|AAG56548.1|AE005380_7 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] gi|26107998|gb|AAN80198.1|AE016760_57 Protein yciO [Escherichia coli CFT073] gi|13361304|dbj|BAB35262.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|24051580|gb|AAN42883.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] gi|30041038|gb|AAP16768.1| hypothetical protein S1355 [Shigella flexneri 2a str. 2457T] gi|73855840|gb|AAZ88547.1| conserved hypothetical protein [Shigella sonnei Ss046] gi|81245690|gb|ABB66398.1| conserved hypothetical protein [Shigella boydii Sb227] gi|91072132|gb|ABE07013.1| hypothetical protein UTI89_C1535 [Escherichia coli UTI89] gi|110614818|gb|ABF03485.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] gi|115512651|gb|ABJ00726.1| conserved hypothetical protein [Escherichia coli APEC O1] gi|170519528|gb|ACB17706.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli SMS-3-5] gi|187769320|gb|EDU33164.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4196] gi|188014770|gb|EDU52892.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4113] gi|188998955|gb|EDU67941.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4076] gi|189359972|gb|EDU78391.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4486] gi|189366283|gb|EDU84699.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4501] gi|189370440|gb|EDU88856.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC869] gi|189376257|gb|EDU94673.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC508] gi|190908834|gb|EDV68422.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli F11] gi|192931710|gb|EDV84310.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli E22] gi|194415876|gb|EDX32142.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli B171] gi|194423934|gb|EDX39922.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli 101-1] gi|208724344|gb|EDZ74052.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4206] gi|208732167|gb|EDZ80855.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4045] gi|208739585|gb|EDZ87267.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4042] gi|209162354|gb|ACI39787.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4115] gi|209772038|gb|ACI84331.1| hypothetical protein ECs1839 [Escherichia coli] gi|209772040|gb|ACI84332.1| hypothetical protein ECs1839 [Escherichia coli] gi|209772042|gb|ACI84333.1| hypothetical protein ECs1839 [Escherichia coli] gi|209772044|gb|ACI84334.1| hypothetical protein ECs1839 [Escherichia coli] gi|209772046|gb|ACI84335.1| hypothetical protein ECs1839 [Escherichia coli] gi|217317563|gb|EEC25991.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. TW14588] gi|226900047|gb|EEH86306.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|227836509|gb|EEJ46975.1| RNA binding protein [Escherichia coli 83972] gi|281600689|gb|ADA73673.1| hypothetical protein SFxv_1441 [Shigella flexneri 2002017] gi|290762227|gb|ADD56188.1| hypothetical protein G2583_1606 [Escherichia coli O55:H7 str. CB9615] gi|320176681|gb|EFW51719.1| YciO family [Shigella dysenteriae CDC 74-1112] gi|320187505|gb|EFW62191.1| YciO family [Shigella flexneri CDC 796-83] gi|320195720|gb|EFW70345.1| YciO family [Escherichia coli WV_060327] gi|320199302|gb|EFW73893.1| YciO family [Escherichia coli EC4100B] gi|326343314|gb|EGD67081.1| YciO family [Escherichia coli O157:H7 str. 1044] gi|330911130|gb|EGH39640.1| YciO family [Escherichia coli AA86] gi|331038623|gb|EGI10843.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli H736] gi|331045340|gb|EGI17467.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli M605] gi|331050582|gb|EGI22640.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli M718] gi|331070013|gb|EGI41382.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli TA280] gi|331075734|gb|EGI47032.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli H591] gi|332101895|gb|EGJ05241.1| yciO [Shigella sp. D9] Length = 218 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 4/161 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E + G I PT++ Y L + A+ R+ I++ P + D+S + Sbjct: 29 INQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELS 88 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 ++ VD ++ L K PG T +L T ++ L KT RVP + L+E Sbjct: 89 TYSFVDNVAFRLMKNNTPGNYTFILK--GTKEVPRRLLQEKRKTIGMRVPSNPIAQALLE 146 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 G P+ S G + + + K++ LII GG Sbjct: 147 ALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGG 187 >gi|172036646|ref|YP_001803147.1| putative Sua5/YciO/YrdC/YwlC [Cyanothece sp. ATCC 51142] gi|171698100|gb|ACB51081.1| putative Sua5/YciO/YrdC/YwlC [Cyanothece sp. ATCC 51142] Length = 221 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 53/206 (25%), Positives = 97/206 (47%), Gaps = 12/206 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + C+ L G + PT+TVY + D + +A++R+ ++K+ PL S +S + Sbjct: 21 IDEICDSLRKGAIMLYPTDTVYAIGCDLNSKSAVQRVRQLKQLSNDKPLTFLCSSLSNIS 80 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVPCG-FTKKLI 128 ++A V + + K PGP T LL T P + + KT RVP + ++ Sbjct: 81 EYAGVTDEAYRIMKRVIPGPYTF---LLPATKAVPKLVMSPKRKTTGIRVPDHPICQAIL 137 Query: 129 ETYGHPLAIPSA---NRSGQI-SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 +P+ SA + G+ +I K L + ++ +IID + STI+++ Sbjct: 138 TELNNPIISTSAHLPDEEGEFPTIGLEKARLFDILESQVDMIIDNSLEPGFDVSTILDMT 197 Query: 185 CEKKVRILRPGGLEIETLKRAISVEL 210 + I+R GL E L+ ++VE+ Sbjct: 198 SDPP-SIIR-QGLGWEALQNWVTVEV 221 >gi|220935185|ref|YP_002514084.1| SUA5/YciO/YrdC/YwlC family protein [Thioalkalivibrio sp. HL-EbGR7] gi|219996495|gb|ACL73097.1| SUA5/YciO/YrdC/YwlC family protein [Thioalkalivibrio sp. HL-EbGR7] Length = 205 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 47/173 (27%), Positives = 72/173 (41%), Gaps = 8/173 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +R+A + + G I PT++ Y L N T + R+ I++ + D+S + Sbjct: 17 IRQAVDVIRDGGVIVYPTDSCYALGCGIGNKTGMERIRRIRQLDDNHHFTLVCRDLSEIA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVP-CGFTKKLI 128 +A VD + L K PGP T LL T P L A KT RVP T+ L+ Sbjct: 77 TYAKVDNTAYRLLKNLTPGPYTF---LLKATHEVPRRLQHAKRKTIGLRVPDHAITQALL 133 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 G PL + G + + + + + LI+ G G+E T V Sbjct: 134 AELGEPLMSTTLQLPGDHLPLSDPYDIEERLSAHVDLILLAG--SCGVEPTTV 184 >gi|330500990|ref|YP_004377859.1| SUA5/YciO/YrdC domain-containing protein [Pseudomonas mendocina NK-01] gi|328915276|gb|AEB56107.1| SUA5/YciO/YrdC domain-containing protein [Pseudomonas mendocina NK-01] Length = 185 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 56/139 (40%), Gaps = 13/139 (9%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++ + G IA PTE V+GL D N A+ RL +K+RP LI DI Sbjct: 7 IQQTARVVREGGVIAYPTEAVWGLGCDPWNEEAVDRLLALKERPMHKGLIVVADDIEQFD 66 Query: 72 --KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP--------C 121 + D LA WPGP T ++ + T T RV C Sbjct: 67 FLLNDLPDVWQERLAG-SWPGPNTWLVP--HQNRLPEWVTGEHDTVALRVSDHPLVRALC 123 Query: 122 GFTKKLIETYGHPLAIPSA 140 +T LI T +P PSA Sbjct: 124 RYTGPLISTSANPAGRPSA 142 >gi|255318610|ref|ZP_05359841.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter radioresistens SK82] gi|262379163|ref|ZP_06072319.1| yrdC domain-containing protein [Acinetobacter radioresistens SH164] gi|255304292|gb|EET83478.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter radioresistens SK82] gi|262298620|gb|EEY86533.1| yrdC domain-containing protein [Acinetobacter radioresistens SH164] Length = 205 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 47/194 (24%), Positives = 81/194 (41%), Gaps = 10/194 (5%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 +A E + AG + PT+ Y + N A+ R+ +I+ + SD+S + + Sbjct: 18 QAVERIRAGDVVVYPTDAAYAIGCQIGNKNAMERIAQIRGLGPKHQYAIMCSDLSDIATY 77 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKLIE 129 A VD L K P T +L S +HP KT R+P + L++ Sbjct: 78 AKVDNAMYRLLKANTPAITTFILPATSEVPRRLMHP----KRKTIGLRIPSNPICQMLLQ 133 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL + GQ + + + + K I + IDGG + ++IV++ E Sbjct: 134 ELGEPLLTSTLILPGQEDPLDDPYEIEQQLGKRIDVFIDGGFGMLS-TTSIVDLSGENP- 191 Query: 190 RILRPGGLEIETLK 203 I+R G ++ + Sbjct: 192 EIIRYGEGDVSAFE 205 >gi|313207355|ref|YP_004046532.1| translation factor sua5 [Riemerella anatipestifer DSM 15868] gi|312446671|gb|ADQ83026.1| translation factor SUA5 [Riemerella anatipestifer DSM 15868] gi|315023250|gb|EFT36260.1| Sua5 YciO YrdC YwlC family protein [Riemerella anatipestifer RA-YM] Length = 203 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 54/196 (27%), Positives = 86/196 (43%), Gaps = 13/196 (6%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK---RPAMNPLICHVSD 66 N +++ + LD G I P++TVY L D N A+ +L +KK A +IC +D Sbjct: 15 NLIKEVIKTLDNGGLIIYPSDTVYALGCDINNIKAMEKLAALKKIKLEKAHFSIIC--ND 72 Query: 67 ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125 +S + +D L K PG T +L+ PL+ KT RVP Sbjct: 73 LSHLSSFTKPIDNSVFRLLKSHIPGAFTFILEANKNL---PLAYKGHKTVGIRVPDHPIP 129 Query: 126 KLI-ETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 +LI E G P+A S + I + +++ + ++ID G + STIV++ Sbjct: 130 QLIVEKLGRPIASTSIKDDDEIIEYSTDPELIAEKYDHLVDIVIDSGYGD-NVASTIVDL 188 Query: 184 QCEKKVRILRPGGLEI 199 I+R G E+ Sbjct: 189 -TSGVAEIIRQGKGEL 203 >gi|240119018|ref|ZP_04733080.1| hypothetical protein NgonPID_11272 [Neisseria gonorrhoeae PID1] Length = 189 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 48/194 (24%), Positives = 84/194 (43%), Gaps = 9/194 (4%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I ++A RK +L G +A PTE+ YGL A+ +L +KKRP + Sbjct: 1 MLFSRIIAASAQRKLSVYLKKGGLVAYPTESCYGLGCLPTLAKALGKLAHLKKRPQHKGM 60 Query: 61 ICHVSDISMVKKHASVDPLS--LHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACF 117 I + + + P + + WP P T + LL+ + + P L Sbjct: 61 IV-IGNQLEQLQPLLQMPFENIQTMLRNEWPAPKTFL--LLAKSGVLPALRGKRRSKLAV 117 Query: 118 RVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 RVP ++L + G PL S NR+G+ + + + +++ I+ G I + Sbjct: 118 RVPDHTGARRLCQALGMPLVSTSCNRAGKRACRTEREV-RRQFGRDV-WIVGGRIGRQKS 175 Query: 177 ESTIVNVQCEKKVR 190 S I++ + K++R Sbjct: 176 PSQIIDGETGKRLR 189 >gi|146305099|ref|YP_001185564.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas mendocina ymp] gi|212288213|sp|A4XNB6|RIMN_PSEMY RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|145573300|gb|ABP82832.1| translation factor SUA5 [Pseudomonas mendocina ymp] Length = 185 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 61/147 (41%), Gaps = 27/147 (18%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 A R CE G IA PTE V+GL D N A+ RL +K+RP LI DI Sbjct: 8 QQAARVVCE----GGVIAYPTEAVWGLGCDPWNEVAVDRLLALKERPVHKGLILVADDIE 63 Query: 69 MVKKHASVDPLSLHLAKLF-------WPGPLTLVL---DLLST--TDIHPLSTANLKTA- 115 D L L ++ WPGP T ++ D L T +H + L+ + Sbjct: 64 ------QFDFLLDDLPAIWQERLAASWPGPNTWLVPHQDRLPAWITGVH--DSVALRVSD 115 Query: 116 --CFRVPCGFTKKLIETYGHPLAIPSA 140 R C T LI T +P P+A Sbjct: 116 HPLVRALCRLTGPLISTSANPAGRPAA 142 >gi|67920201|ref|ZP_00513721.1| Sua5/YciO/YrdC/YwlC [Crocosphaera watsonii WH 8501] gi|67857685|gb|EAM52924.1| Sua5/YciO/YrdC/YwlC [Crocosphaera watsonii WH 8501] Length = 217 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 51/203 (25%), Positives = 97/203 (47%), Gaps = 14/203 (6%) Query: 16 CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75 C L G + PT+TVY + D + +A++R+ ++K+ PL S +S + K+A Sbjct: 21 CSALRQGAIMLYPTDTVYAIGCDLNSKSAVQRVRQLKQLSNDKPLTFLCSSLSNIAKYAG 80 Query: 76 VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVPCG-FTKKLIETYG 132 V+ + + K PGP T LL T P + + K+ RVP + +++ Sbjct: 81 VEDEAYRVMKRLIPGPYTF---LLPATKAVPKLVMSPKRKSTGIRVPDHPICQAILQGLE 137 Query: 133 HPLAIPSA---NRSGQISITNVKHI-LSSSICKEIPLIIDGGISKIGLE-STIVNVQCEK 187 +P+ SA + G+ ++ + L + ++ +IID + G E STI+++ + Sbjct: 138 NPIVSTSAHLPDEDGEFPTLGLEKVKLFDILENQVDIIIDNSLEP-GFEVSTILDMTSDP 196 Query: 188 KVRILRPGGLEIETLKRAISVEL 210 I+R GL E L+ + +++ Sbjct: 197 P-SIIR-QGLGWEELQNWVKLQV 217 >gi|116072664|ref|ZP_01469930.1| hypothetical protein BL107_09136 [Synechococcus sp. BL107] gi|116064551|gb|EAU70311.1| hypothetical protein BL107_09136 [Synechococcus sp. BL107] Length = 202 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/132 (34%), Positives = 66/132 (50%), Gaps = 13/132 (9%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L A + IPT+T+ GLAV +N I + +K+RPA PLI + + + + VD Sbjct: 19 LQASEAVIIPTDTLPGLAVLPQNAETI---WTLKQRPADKPLILMGATVDALLE--GVDS 73 Query: 79 LSLHLAKLF----WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGH 133 + AK WPG +TLVL + L+ C R+P C T+ L+ ++ Sbjct: 74 RCHNDAKTLAAKHWPGAITLVLPARGPY-VDYLNPGGSNIGC-RIPACAVTQNLL-SFSG 130 Query: 134 PLAIPSANRSGQ 145 PLA SAN SGQ Sbjct: 131 PLATSSANPSGQ 142 >gi|228472867|ref|ZP_04057624.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga gingivalis ATCC 33624] gi|228275449|gb|EEK14226.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga gingivalis ATCC 33624] Length = 207 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 45/178 (25%), Positives = 80/178 (44%), Gaps = 12/178 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYE---IKKRPAMNPLICHVSDIS 68 ++K + L G I PT+TVYGL D + A+ R+ + IK A IC +D+S Sbjct: 17 IQKVVDCLREGGVIIYPTDTVYGLGCDITHSKALERIAQLKGIKLDKANFSFIC--ADLS 74 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + + +D + L K PG T + L ++ P KT R+P + Sbjct: 75 NLSDYVKQIDTTTFKLLKRALPGAYTFI---LPGSNNLPKEFKKKKTVGIRIPDNTIART 131 Query: 127 LIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 L+E G+P+ S ++ T ++ ++ ++IDGG + ST++++ Sbjct: 132 LVEKLGNPIVSSSIYDEDEVLEYTTDPELIFEKWQDKVDIVIDGGYGD-NVASTVIDL 188 >gi|239999974|ref|ZP_04719898.1| hypothetical protein Ngon3_10911 [Neisseria gonorrhoeae 35/02] gi|240017646|ref|ZP_04724186.1| hypothetical protein NgonFA_10873 [Neisseria gonorrhoeae FA6140] gi|240114151|ref|ZP_04728641.1| hypothetical protein NgonM_11394 [Neisseria gonorrhoeae MS11] gi|240116791|ref|ZP_04730853.1| hypothetical protein NgonPID1_11236 [Neisseria gonorrhoeae PID18] gi|240122444|ref|ZP_04735400.1| hypothetical protein NgonP_00611 [Neisseria gonorrhoeae PID332] gi|240126706|ref|ZP_04739592.1| hypothetical protein NgonSK_10938 [Neisseria gonorrhoeae SK-92-679] gi|254493456|ref|ZP_05106627.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|260441583|ref|ZP_05795399.1| hypothetical protein NgonDG_10945 [Neisseria gonorrhoeae DGI2] gi|268595781|ref|ZP_06129948.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268600226|ref|ZP_06134393.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268602466|ref|ZP_06136633.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|268604733|ref|ZP_06138900.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268681032|ref|ZP_06147894.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268685287|ref|ZP_06152149.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|291044953|ref|ZP_06570662.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|226512496|gb|EEH61841.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|268549170|gb|EEZ44588.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268584357|gb|EEZ49033.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268586597|gb|EEZ51273.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|268588864|gb|EEZ53540.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268621316|gb|EEZ53716.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268625571|gb|EEZ57971.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|291011847|gb|EFE03843.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|317165270|gb|ADV08811.1| hypothetical protein NGTW08_1856 [Neisseria gonorrhoeae TCDC-NG08107] Length = 200 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 49/195 (25%), Positives = 85/195 (43%), Gaps = 11/195 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I ++A RK +L G +A PTE+ YGL A+ +L +KKRP + Sbjct: 12 MLFSRIIAASAQRKLSVYLKKGGLVAYPTESCYGLGCLPTLAKALGKLAHLKKRPQHKGM 71 Query: 61 ICHVSDISMVKKHASVDPLS--LHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACF 117 I + + + P + + WP P T + LL+ + + P L Sbjct: 72 IV-IGNQLEQLQPLLQMPFENIQTMLRNEWPAPKTFL--LLAKSGVLPALRGKRRSKLAV 128 Query: 118 RVP--CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 RVP G ++L + G PL S NR+G+ + + + +++ I+ G I + Sbjct: 129 RVPDHTG-ARRLCQALGMPLVSTSCNRAGKRACRTEREV-RRQFGRDV-WIVGGRIGRQK 185 Query: 176 LESTIVNVQCEKKVR 190 S I++ + K++R Sbjct: 186 SPSQIIDGETGKRLR 200 >gi|89108113|ref|AP_001893.1| hypothetical protein [Escherichia coli str. K-12 substr. W3110] gi|110641496|ref|YP_669226.1| hypothetical protein ECP_1314 [Escherichia coli 536] gi|157155810|ref|YP_001462564.1| hypothetical protein EcE24377A_1466 [Escherichia coli E24377A] gi|157160772|ref|YP_001458090.1| hypothetical protein EcHS_A1376 [Escherichia coli HS] gi|162135901|ref|NP_415783.6| predicted RNA binding protein [Escherichia coli str. K-12 substr. MG1655] gi|168758351|ref|ZP_02783358.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4401] gi|170020369|ref|YP_001725323.1| hypothetical protein EcolC_2361 [Escherichia coli ATCC 8739] gi|170080944|ref|YP_001730264.1| hypothetical protein ECDH10B_1382 [Escherichia coli str. K-12 substr. DH10B] gi|187733520|ref|YP_001880097.1| hypothetical protein SbBS512_E1491 [Shigella boydii CDC 3083-94] gi|188495376|ref|ZP_03002646.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli 53638] gi|191166644|ref|ZP_03028472.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli B7A] gi|193069999|ref|ZP_03050947.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli E110019] gi|194435054|ref|ZP_03067293.1| Sua5/YciO/YrdC/YwlC family protein [Shigella dysenteriae 1012] gi|195939200|ref|ZP_03084582.1| hypothetical protein EscherichcoliO157_22736 [Escherichia coli O157:H7 str. EC4024] gi|209918507|ref|YP_002292591.1| hypothetical protein ECSE_1316 [Escherichia coli SE11] gi|215486562|ref|YP_002328993.1| hypothetical protein E2348C_1457 [Escherichia coli O127:H6 str. E2348/69] gi|218549042|ref|YP_002382833.1| hypothetical protein EFER_1690 [Escherichia fergusonii ATCC 35469] gi|218553819|ref|YP_002386732.1| hypothetical protein ECIAI1_1286 [Escherichia coli IAI1] gi|218558252|ref|YP_002391165.1| hypothetical protein ECS88_1401 [Escherichia coli S88] gi|218689257|ref|YP_002397469.1| hypothetical protein ECED1_1473 [Escherichia coli ED1a] gi|218694838|ref|YP_002402505.1| hypothetical protein EC55989_1424 [Escherichia coli 55989] gi|218699974|ref|YP_002407603.1| hypothetical protein ECIAI39_1603 [Escherichia coli IAI39] gi|218704790|ref|YP_002412309.1| hypothetical protein ECUMN_1565 [Escherichia coli UMN026] gi|238900500|ref|YP_002926296.1| hypothetical protein BWG_1096 [Escherichia coli BW2952] gi|253773736|ref|YP_003036567.1| hypothetical protein ECBD_2356 [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161346|ref|YP_003044454.1| hypothetical protein ECB_01241 [Escherichia coli B str. REL606] gi|254792855|ref|YP_003077692.1| hypothetical protein ECSP_1785 [Escherichia coli O157:H7 str. TW14359] gi|256018487|ref|ZP_05432352.1| hypothetical protein ShiD9_06202 [Shigella sp. D9] gi|256023025|ref|ZP_05436890.1| hypothetical protein E4_06609 [Escherichia sp. 4_1_40B] gi|260843615|ref|YP_003221393.1| hypothetical protein ECO103_1429 [Escherichia coli O103:H2 str. 12009] gi|260867716|ref|YP_003234118.1| hypothetical protein ECO111_1647 [Escherichia coli O111:H- str. 11128] gi|261224249|ref|ZP_05938530.1| hypothetical protein EscherichiacoliO157_06545 [Escherichia coli O157:H7 str. FRIK2000] gi|261257495|ref|ZP_05950028.1| hypothetical protein EscherichiacoliO157EcO_16982 [Escherichia coli O157:H7 str. FRIK966] gi|293404808|ref|ZP_06648800.1| hypothetical protein ECGG_00131 [Escherichia coli FVEC1412] gi|293409651|ref|ZP_06653227.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli B354] gi|293414599|ref|ZP_06657248.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli B185] gi|293433628|ref|ZP_06662056.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli B088] gi|298380449|ref|ZP_06990048.1| hypothetical protein ECFG_00142 [Escherichia coli FVEC1302] gi|300820148|ref|ZP_07100317.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 107-1] gi|300822570|ref|ZP_07102709.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 119-7] gi|300896125|ref|ZP_07114679.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 198-1] gi|300904136|ref|ZP_07122009.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 84-1] gi|300919447|ref|ZP_07135948.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 115-1] gi|300926648|ref|ZP_07142425.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 182-1] gi|300927773|ref|ZP_07143337.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 187-1] gi|300940070|ref|ZP_07154680.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 21-1] gi|300951923|ref|ZP_07165727.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 116-1] gi|300955868|ref|ZP_07168207.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 175-1] gi|300971790|ref|ZP_07171624.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 200-1] gi|300982414|ref|ZP_07176111.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 45-1] gi|301019491|ref|ZP_07183660.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 69-1] gi|301046929|ref|ZP_07194043.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 185-1] gi|301304782|ref|ZP_07210888.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 124-1] gi|301327009|ref|ZP_07220296.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 78-1] gi|301647239|ref|ZP_07247058.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 146-1] gi|306813710|ref|ZP_07447891.1| hypothetical protein ECNC101_17397 [Escherichia coli NC101] gi|307137904|ref|ZP_07497260.1| hypothetical protein EcolH7_07197 [Escherichia coli H736] gi|307309979|ref|ZP_07589629.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli W] gi|309793260|ref|ZP_07687687.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 145-7] gi|312966805|ref|ZP_07781023.1| yrdC domain protein [Escherichia coli 2362-75] gi|331657314|ref|ZP_08358276.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli TA206] gi|331662678|ref|ZP_08363601.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli TA143] gi|331682752|ref|ZP_08383371.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli H299] gi|84027907|sp|P0AFR5|YCIO_ECOL6 RecName: Full=Uncharacterized protein yciO gi|84027908|sp|P0AFR4|YCIO_ECOLI RecName: Full=Uncharacterized protein yciO gi|84027909|sp|P0AFR6|YCIO_SHIFL RecName: Full=Uncharacterized protein yciO gi|85674890|dbj|BAA14801.2| conserved hypothetical protein [Escherichia coli str. K12 substr. W3110] gi|87081864|gb|AAC74349.2| predicted RNA binding protein [Escherichia coli str. K-12 substr. MG1655] gi|110343088|gb|ABG69325.1| probable translation factor YciO [Escherichia coli 536] gi|157066452|gb|ABV05707.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli HS] gi|157077840|gb|ABV17548.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli E24377A] gi|169755297|gb|ACA77996.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli ATCC 8739] gi|169888779|gb|ACB02486.1| conserved protein [Escherichia coli str. K-12 substr. DH10B] gi|187430512|gb|ACD09786.1| Sua5/YciO/YrdC/YwlC family protein [Shigella boydii CDC 3083-94] gi|188490575|gb|EDU65678.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli 53638] gi|189354813|gb|EDU73232.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4401] gi|190903293|gb|EDV63014.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli B7A] gi|192956752|gb|EDV87207.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli E110019] gi|194416711|gb|EDX32841.1| Sua5/YciO/YrdC/YwlC family protein [Shigella dysenteriae 1012] gi|209911766|dbj|BAG76840.1| conserved hypothetical protein [Escherichia coli SE11] gi|215264634|emb|CAS09005.1| predicted protein [Escherichia coli O127:H6 str. E2348/69] gi|218351570|emb|CAU97282.1| conserved hypothetical protein [Escherichia coli 55989] gi|218356583|emb|CAQ89206.1| conserved hypothetical protein [Escherichia fergusonii ATCC 35469] gi|218360587|emb|CAQ98145.1| conserved hypothetical protein [Escherichia coli IAI1] gi|218365021|emb|CAR02724.1| conserved hypothetical protein [Escherichia coli S88] gi|218369960|emb|CAR17734.1| conserved hypothetical protein [Escherichia coli IAI39] gi|218426821|emb|CAR07671.2| conserved hypothetical protein [Escherichia coli ED1a] gi|218431887|emb|CAR12772.1| conserved hypothetical protein [Escherichia coli UMN026] gi|222033071|emb|CAP75811.1| Uncharacterized protein yciO [Escherichia coli LF82] gi|238860471|gb|ACR62469.1| conserved protein [Escherichia coli BW2952] gi|242377044|emb|CAQ31768.1| conserved protein [Escherichia coli BL21(DE3)] gi|253324780|gb|ACT29382.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973247|gb|ACT38918.1| hypothetical protein ECB_01241 [Escherichia coli B str. REL606] gi|253977461|gb|ACT43131.1| hypothetical protein ECD_01241 [Escherichia coli BL21(DE3)] gi|254592255|gb|ACT71616.1| predicted RNA-binding protein [Escherichia coli O157:H7 str. TW14359] gi|257758762|dbj|BAI30259.1| conserved predicted protein [Escherichia coli O103:H2 str. 12009] gi|257764072|dbj|BAI35567.1| conserved predicted protein [Escherichia coli O111:H- str. 11128] gi|260449603|gb|ACX40025.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli DH1] gi|281178455|dbj|BAI54785.1| conserved hypothetical protein [Escherichia coli SE15] gi|291324447|gb|EFE63869.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli B088] gi|291427016|gb|EFF00043.1| hypothetical protein ECGG_00131 [Escherichia coli FVEC1412] gi|291434657|gb|EFF07630.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli B185] gi|291470119|gb|EFF12603.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli B354] gi|294493370|gb|ADE92126.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli IHE3034] gi|298277891|gb|EFI19405.1| hypothetical protein ECFG_00142 [Escherichia coli FVEC1302] gi|300301155|gb|EFJ57540.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 185-1] gi|300309296|gb|EFJ63816.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 200-1] gi|300317270|gb|EFJ67054.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 175-1] gi|300359989|gb|EFJ75859.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 198-1] gi|300399232|gb|EFJ82770.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 69-1] gi|300403901|gb|EFJ87439.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 84-1] gi|300408752|gb|EFJ92290.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 45-1] gi|300413469|gb|EFJ96779.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 115-1] gi|300417349|gb|EFK00660.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 182-1] gi|300448867|gb|EFK12487.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 116-1] gi|300455105|gb|EFK18598.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 21-1] gi|300464166|gb|EFK27659.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 187-1] gi|300524986|gb|EFK46055.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 119-7] gi|300527303|gb|EFK48365.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 107-1] gi|300839903|gb|EFK67663.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 124-1] gi|300846357|gb|EFK74117.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 78-1] gi|301074601|gb|EFK89407.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 146-1] gi|305852984|gb|EFM53429.1| hypothetical protein ECNC101_17397 [Escherichia coli NC101] gi|306909697|gb|EFN40191.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli W] gi|307553325|gb|ADN46100.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli ABU 83972] gi|307627159|gb|ADN71463.1| hypothetical protein UM146_10450 [Escherichia coli UM146] gi|308122847|gb|EFO60109.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 145-7] gi|309701565|emb|CBJ00872.1| conserved hypothetical protein [Escherichia coli ETEC H10407] gi|312288269|gb|EFR16171.1| yrdC domain protein [Escherichia coli 2362-75] gi|312945901|gb|ADR26728.1| hypothetical protein NRG857_06500 [Escherichia coli O83:H1 str. NRG 857C] gi|313649456|gb|EFS13887.1| yrdC domain protein [Shigella flexneri 2a str. 2457T] gi|315060518|gb|ADT74845.1| hypothetical protein ECW_m1359 [Escherichia coli W] gi|315135903|dbj|BAJ43062.1| hypothetical protein ECDH1ME8569_1206 [Escherichia coli DH1] gi|315254774|gb|EFU34742.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 85-1] gi|315289105|gb|EFU48503.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 110-3] gi|315294758|gb|EFU54101.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 153-1] gi|315297256|gb|EFU56536.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 16-3] gi|315619345|gb|EFU99889.1| yrdC domain protein [Escherichia coli 3431] gi|320181707|gb|EFW56618.1| YciO family [Shigella boydii ATCC 9905] gi|320189982|gb|EFW64634.1| YciO family [Escherichia coli O157:H7 str. EC1212] gi|320637161|gb|EFX06987.1| hypothetical protein ECO5101_20125 [Escherichia coli O157:H7 str. G5101] gi|320642527|gb|EFX11775.1| hypothetical protein ECO9389_21424 [Escherichia coli O157:H- str. 493-89] gi|320647880|gb|EFX16588.1| hypothetical protein ECO2687_09354 [Escherichia coli O157:H- str. H 2687] gi|320653482|gb|EFX21587.1| hypothetical protein ECO7815_06412 [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659182|gb|EFX26771.1| hypothetical protein ECO5905_15803 [Escherichia coli O55:H7 str. USDA 5905] gi|320663975|gb|EFX31162.1| hypothetical protein ECOSU61_13093 [Escherichia coli O157:H7 str. LSU-61] gi|323162372|gb|EFZ48227.1| yrdC domain protein [Escherichia coli E128010] gi|323168240|gb|EFZ53925.1| yrdC domain protein [Shigella sonnei 53G] gi|323172377|gb|EFZ58014.1| yrdC domain protein [Escherichia coli LT-68] gi|323179781|gb|EFZ65342.1| yrdC domain protein [Escherichia coli 1180] gi|323185574|gb|EFZ70935.1| yrdC domain protein [Escherichia coli 1357] gi|323378919|gb|ADX51187.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli KO11] gi|323937588|gb|EGB33856.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli E1520] gi|323942381|gb|EGB38551.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli E482] gi|323947452|gb|EGB43456.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli H120] gi|323949130|gb|EGB45022.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli H252] gi|323953862|gb|EGB49663.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli H263] gi|323962567|gb|EGB58147.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli H489] gi|323973493|gb|EGB68679.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli TA007] gi|324006123|gb|EGB75342.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 57-2] gi|324011322|gb|EGB80541.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 60-1] gi|324018953|gb|EGB88172.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 117-3] gi|324113139|gb|EGC07114.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia fergusonii B253] gi|324117540|gb|EGC11446.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli E1167] gi|325497459|gb|EGC95318.1| hypothetical protein ECD227_1556 [Escherichia fergusonii ECD227] gi|326341073|gb|EGD64866.1| YciO family [Escherichia coli O157:H7 str. 1125] gi|331055562|gb|EGI27571.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli TA206] gi|331061100|gb|EGI33064.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli TA143] gi|331080383|gb|EGI51562.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli H299] gi|332091657|gb|EGI96737.1| yrdC domain protein [Shigella boydii 5216-82] gi|332094838|gb|EGI99882.1| yrdC domain protein [Shigella boydii 3594-74] gi|332098121|gb|EGJ03094.1| yrdC domain protein [Shigella dysenteriae 155-74] gi|332342859|gb|AEE56193.1| conserved hypothetical protein [Escherichia coli UMNK88] gi|332757919|gb|EGJ88246.1| yrdC domain protein [Shigella flexneri 4343-70] gi|332759350|gb|EGJ89658.1| yrdC domain protein [Shigella flexneri 2747-71] gi|332760362|gb|EGJ90652.1| yrdC domain protein [Shigella flexneri K-671] gi|332767502|gb|EGJ97696.1| yrdC domain protein [Shigella flexneri 2930-71] gi|333004582|gb|EGK24106.1| yrdC domain protein [Shigella flexneri VA-6] gi|333005653|gb|EGK25171.1| yrdC domain protein [Shigella flexneri K-218] gi|333019096|gb|EGK38386.1| yrdC domain protein [Shigella flexneri K-304] Length = 206 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 4/161 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E + G I PT++ Y L + A+ R+ I++ P + D+S + Sbjct: 17 INQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 ++ VD ++ L K PG T +L T ++ L KT RVP + L+E Sbjct: 77 TYSFVDNVAFRLMKNNTPGNYTFILK--GTKEVPRRLLQEKRKTIGMRVPSNPIAQALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 G P+ S G + + + K++ LII GG Sbjct: 135 ALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGG 175 >gi|301022797|ref|ZP_07186639.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 196-1] gi|299881098|gb|EFI89309.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 196-1] Length = 206 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 4/161 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E + G I PT++ Y L + A+ R+ I++ P + D+S + Sbjct: 17 INQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 ++ VD ++ L K PG T +L T ++ L KT RVP + L+E Sbjct: 77 TYSFVDNVAFRLMKNNTPGNYTFILK--GTKEVPRRLLQEKRKTIGMRVPSNPIAQTLLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 G P+ S G + + + K++ LII GG Sbjct: 135 ALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGG 175 >gi|134095363|ref|YP_001100438.1| hypothetical protein HEAR2179 [Herminiimonas arsenicoxydans] gi|133739266|emb|CAL62315.1| Conserved hypothetical protein, putative translation factor [Herminiimonas arsenicoxydans] Length = 207 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 4/159 (2%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 +A E + G +A+PT++ Y L + A+ RL I+ + L D+S + ++ Sbjct: 19 QAVEVIKGGGIVALPTDSCYALVCQLDDKDAVARLRRIRNVDDKHHLTLLCRDLSEIAQY 78 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIETY 131 A +D L K PG T +L+ +T ++ LS + KT RVP ++E Sbjct: 79 AKIDNQQYRLLKAATPGAYTFILE--ATKEVPRRLSHPSRKTIGLRVPENRIVHAVLEEL 136 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 PL + G+ + + K + L+IDGG Sbjct: 137 AQPLLGTTLILPGEDEPLTDPDDVRDRLSKVVDLVIDGG 175 >gi|311279824|ref|YP_003942055.1| Sua5/YciO/YrdC/YwlC family protein [Enterobacter cloacae SCF1] gi|308749019|gb|ADO48771.1| Sua5/YciO/YrdC/YwlC family protein [Enterobacter cloacae SCF1] Length = 206 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 48/186 (25%), Positives = 78/186 (41%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E + G I PT++ Y L + A+ R+ I+ P + D+S + Sbjct: 17 INQAVEIVRKGGVIVYPTDSGYALGCKIEDKGAMERICRIRHLPDGHNFTLVCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD ++ L K PG T +L T ++ L KT RVP + L+E Sbjct: 77 TYAYVDNVAFRLIKNNTPGNYTFILK--GTKEVPRRLLQEKRKTIGMRVPSNPIAQALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G P+ S G + + + K++ LII GG +G + T V + Sbjct: 135 AIGEPMLSTSLMLPGSDFTESDPDEIKDRLEKQVDLIIHGGY--LGQQPTTVIDLTDDAP 192 Query: 190 RILRPG 195 +LR G Sbjct: 193 VVLREG 198 >gi|218247419|ref|YP_002372790.1| SUA5/yciO/yrdC domain-containing protein [Cyanothece sp. PCC 8801] gi|257061244|ref|YP_003139132.1| SUA5/yciO/yrdC domain protein [Cyanothece sp. PCC 8802] gi|218167897|gb|ACK66634.1| SUA5/yciO/yrdC domain protein [Cyanothece sp. PCC 8801] gi|256591410|gb|ACV02297.1| SUA5/yciO/yrdC domain protein [Cyanothece sp. PCC 8802] Length = 197 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/139 (33%), Positives = 64/139 (46%), Gaps = 12/139 (8%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81 G ++ PT+TV LA +N I + KKRP PLI + I + ++ P L Sbjct: 16 GQVVSFPTDTVPALAALPQNAALI---FATKKRPPDKPLILMGASIEALWQYIQGTPEEL 72 Query: 82 HL----AKLFWPGPLTLVLDL--LSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPL 135 L A+ +WPG LTLVL L ++PL + T R+P + I L Sbjct: 73 ALWQQIAESYWPGSLTLVLPASSLVPAAMNPL---DPTTIGVRIPNHPIAQAILAETGCL 129 Query: 136 AIPSANRSGQISITNVKHI 154 A SANRSGQ + + I Sbjct: 130 ATTSANRSGQPPLETMTAI 148 >gi|126660837|ref|ZP_01731931.1| hypothetical protein CY0110_27268 [Cyanothece sp. CCY0110] gi|126617888|gb|EAZ88663.1| hypothetical protein CY0110_27268 [Cyanothece sp. CCY0110] Length = 217 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 53/202 (26%), Positives = 94/202 (46%), Gaps = 12/202 (5%) Query: 16 CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75 C+ L G + PT+TVY + D + +A++R+ ++K+ PL S +S + +A Sbjct: 21 CDSLRKGAIMLYPTDTVYAIGCDLNSKSAVQRVRQLKQLSNDKPLTFLCSSLSNIADYAG 80 Query: 76 VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVPCG-FTKKLIETYG 132 V + + K PGP T LL T P + + KT RVP + ++ Sbjct: 81 VTDEAYRIMKRVIPGPYTF---LLPATKAVPKLVMSPKRKTTGIRVPDHPICQAILTELN 137 Query: 133 HPLAIPSA---NRSGQI-SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 +P+ SA + G+ +I K L + ++ +IID + STI+++ + Sbjct: 138 NPIISTSAHLPDEEGEFPTIGLEKARLFDILESQVDMIIDNSLEPGFDVSTILDMTSDPP 197 Query: 189 VRILRPGGLEIETLKRAISVEL 210 I+R GL E L+ ++VE+ Sbjct: 198 -SIIR-QGLGWEALQNWVTVEV 217 >gi|157145596|ref|YP_001452915.1| hypothetical protein CKO_01342 [Citrobacter koseri ATCC BAA-895] gi|157082801|gb|ABV12479.1| hypothetical protein CKO_01342 [Citrobacter koseri ATCC BAA-895] Length = 206 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 48/186 (25%), Positives = 77/186 (41%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E + G I PT++ Y L + A+ R+ I+ P + D+S + Sbjct: 17 INQAVEIVRKGGVIVYPTDSGYALGCKIEDKGAMERICRIRHLPDGHNFTLMCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 ++ VD ++ L K PG T +L T D+ L KT RVP L+E Sbjct: 77 TYSFVDNVAFRLIKNNTPGNYTFILK--GTKDVPRRLLQEKRKTIGLRVPSNPIALALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G P+ S G + + + K++ LII GG +G + T V + Sbjct: 135 ALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGGY--LGQQPTTVIDLTDDSP 192 Query: 190 RILRPG 195 +LR G Sbjct: 193 VVLREG 198 >gi|325860005|ref|ZP_08173132.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella denticola CRIS 18C-A] gi|327313739|ref|YP_004329176.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella denticola F0289] gi|325482531|gb|EGC85537.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella denticola CRIS 18C-A] gi|326944894|gb|AEA20779.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella denticola F0289] Length = 189 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 2/89 (2%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV-SDIS 68 + ++KA + + G I PT+TV+G+ D+ N A+ ++Y +K+R LIC V SD Sbjct: 5 DDIKKAIDVMKNGGIILYPTDTVWGIGCDATNAEAVAKVYALKRRDDSKALICLVDSDDR 64 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLD 97 + + SV ++ L P TL+LD Sbjct: 65 LQRYVRSVPDVAWQLIDAV-DKPTTLILD 92 >gi|305667010|ref|YP_003863297.1| putative Sua5/yciO/yrdC family protein [Maribacter sp. HTCC2170] gi|88709245|gb|EAR01479.1| putative Sua5/yciO/yrdC family protein [Maribacter sp. HTCC2170] Length = 206 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 48/191 (25%), Positives = 85/191 (44%), Gaps = 13/191 (6%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK---RPAMNPLICHVSDI 67 A+ + + L G I PT+TVY L D N A+ +L IK A +C +D+ Sbjct: 16 AISRVVQSLRKGGLIIYPTDTVYSLGCDITNTRALEKLARIKGIKLEKANWSFVC--ADL 73 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 S + + +D + K PGP T + L ++ P KT RVP K Sbjct: 74 SNLSDYVRQIDTSVFKILKRALPGPYTFI---LPGSNSLPKVFKKKKTIGIRVPNNSIPK 130 Query: 126 KLIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 L++ G+P+ S + ++ T ++ + ++IDGG + ST++++ Sbjct: 131 TLVQELGNPIVSTSIHDEDEVLEYTTDPELIHEKWGNIVDVVIDGGYGG-NIASTVIDL- 188 Query: 185 CEKKVRILRPG 195 + +V ++R G Sbjct: 189 SQDEVEVVREG 199 >gi|149372161|ref|ZP_01891431.1| translation factor [unidentified eubacterium SCB49] gi|149354928|gb|EDM43490.1| translation factor [unidentified eubacterium SCB49] Length = 205 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 52/216 (24%), Positives = 93/216 (43%), Gaps = 31/216 (14%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYE---IKKR 54 + + I D+N +++ + G + P++TVY L D N +A RL + +K Sbjct: 3 EFIKIYDNNPNEKDIKRVVSIIKKGGLVIYPSDTVYALGCDVTNKSAYERLAKLKGVKPE 62 Query: 55 PAMNPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANL- 112 A ++C D+S + + +D + L K +PGP T +L S NL Sbjct: 63 KANFSIVCE--DLSNLSDYVKQIDGTTFKLLKRAFPGPYTFILP----------SNNNLT 110 Query: 113 ------KTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIP 164 K RVP T+ +I+ G+P+ S ++ T ++ K + Sbjct: 111 GYFKKKKEVGIRVPDNTITQAIIKELGNPIVSTSIKDEDEVLEYTTDPELIFEKWEKLVD 170 Query: 165 LIIDGGISKIGLESTIVNVQCEKKVRILR-PGGLEI 199 +++DGG + STI+++ + V + G LEI Sbjct: 171 VVVDGGYGD-NVASTIIDITSGEPVLVREGKGSLEI 205 >gi|15677963|ref|NP_275135.1| hypothetical protein NMB2150 [Neisseria meningitidis MC58] gi|161871012|ref|YP_001600192.1| hypothetical protein NMCC_2108 [Neisseria meningitidis 053442] gi|81784069|sp|Q9JXA4|RIMN_NEIMB RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|212288211|sp|A9M4K6|RIMN_NEIM0 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|212288268|sp|A1KWL6|RIMN_NEIMF RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|212288269|sp|A1IP83|RIMN_NEIMA RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|7227408|gb|AAF42458.1| conserved hypothetical protein [Neisseria meningitidis MC58] gi|161596565|gb|ABX74225.1| putative translation factor [Neisseria meningitidis 053442] gi|261393462|emb|CAX51108.1| putative RNA-binding protein [Neisseria meningitidis 8013] Length = 189 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/187 (24%), Positives = 81/187 (43%), Gaps = 5/187 (2%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I ++A RK +L G +A PTE+ YGL A+ +L +KKRP +I + Sbjct: 6 IIAASAQRKLSVYLKKGGLVAYPTESCYGLGCLPTLAKALGKLAHLKKRPQHKGMIVIGN 65 Query: 66 DISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF- 123 ++ + +L + + WP P T +L S + L RVP Sbjct: 66 QFEQLQPLLQMPSENLQDMLRKEWPAPKTFLLSAKSCV-LPELRGKQRSKLAVRVPAHVG 124 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 ++L + PL S NR+G+ + + + +++ I+ G I + S I++ Sbjct: 125 ARRLCQALQTPLVSTSCNRAGKRACRTEREV-RRQFGRDV-WIVGGRIGRQKSPSQIIDG 182 Query: 184 QCEKKVR 190 + K++R Sbjct: 183 ETGKRLR 189 >gi|119775262|ref|YP_928002.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella amazonensis SB2B] gi|119767762|gb|ABM00333.1| translation factor SUA5 [Shewanella amazonensis SB2B] Length = 206 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 8/189 (4%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 +A L +G I PT++ Y L + A+ R+ I++ + D+S + + Sbjct: 19 QAVNILRSGGVIVYPTDSGYALGCLIGDKNAMERIVRIRQMEQDHHFSLMCRDLSEIATY 78 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCGFTK-KLIETY 131 A V+ + L K PGP T + +T ++ L KT RVP L+E Sbjct: 79 ARVENQAFRLVKHCTPGPYTFIFK--ATKEVPRRLQNDKKKTIGIRVPDNVIALALLEAL 136 Query: 132 GHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G PL S GQ + ++ +HI + ++ I++GG +G T V E Sbjct: 137 GEPLMSTSLVMPGQEFAESDPEHI-RDLLEHQVEAILNGGY--LGESPTTVVDMSEDTFE 193 Query: 191 ILRPGGLEI 199 +LR G +I Sbjct: 194 VLREGAGDI 202 >gi|255535332|ref|YP_003095703.1| Sua5 YciO YrdC YwlC family protein [Flavobacteriaceae bacterium 3519-10] gi|255341528|gb|ACU07641.1| Sua5 YciO YrdC YwlC family protein [Flavobacteriaceae bacterium 3519-10] Length = 205 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 52/197 (26%), Positives = 87/197 (44%), Gaps = 13/197 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK---RPAMNPLICHVS 65 N + + + L G I P++TVY L + + A+ +L +IKK A +IC+ Sbjct: 16 ENLIDEVVKTLQNGGIIIYPSDTVYALGCNIFDIRAMEKLAQIKKIKLEKAQFSIICN-- 73 Query: 66 DISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 D+ + +D K PGP T +L+ + PL+ KT RVP Sbjct: 74 DLGHLSGFTRPIDTPVFRFLKSKIPGPFTFILEAGKSL---PLAYKGNKTVGIRVPDHVI 130 Query: 125 KKLI-ETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 +LI E GHP+A S + I + +++ + ++ID G + STIV+ Sbjct: 131 PQLIVEKLGHPIASTSVKDDDEVIEYSTDPELIAEKYDNLVDIVIDSGYGD-NVASTIVD 189 Query: 183 VQCEKKVRILRPGGLEI 199 + + I+R G E+ Sbjct: 190 LTSGEP-EIVRQGKGEV 205 >gi|83647680|ref|YP_436115.1| putative translation factor (SUA5) [Hahella chejuensis KCTC 2396] gi|83635723|gb|ABC31690.1| putative translation factor (SUA5) [Hahella chejuensis KCTC 2396] Length = 205 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 49/195 (25%), Positives = 80/195 (41%), Gaps = 10/195 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +R+A E + +G I PT++ Y L + A R+ I++ + D+S + Sbjct: 17 VRQAVEIIHSGGVIVYPTDSGYALGCAIGDKNAADRIKSIRRLDDKHNFTLVCRDLSDIS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127 +A VD + L K PG T +L S +HP + RVP + L Sbjct: 77 TYAKVDNSTYRLLKNHTPGAYTFILTATSEVPRRLLHP----KRRQIGIRVPDNRIAQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL + G+ + + + + LIIDGG G+E T V + Sbjct: 133 LEELGAPLMSSTLIMPGEEMPMTDPYEIRQMLEHAVDLIIDGGFC--GMEPTSVVDLTDD 190 Query: 188 KVRILRPGGLEIETL 202 ILR G ++ + Sbjct: 191 APVILREGAGDVSSF 205 >gi|189468028|ref|ZP_03016813.1| hypothetical protein BACINT_04422 [Bacteroides intestinalis DSM 17393] gi|189436292|gb|EDV05277.1| hypothetical protein BACINT_04422 [Bacteroides intestinalis DSM 17393] Length = 204 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 51/190 (26%), Positives = 83/190 (43%), Gaps = 13/190 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSDISMV 70 L++ + L+ G I PT+T+Y + AI R+ IK+ P N L D+S + Sbjct: 15 LQQIVDILNDGGLIIYPTDTMYAIGCHGLKERAIERICRIKEIDPRKNNLSIICYDLSSI 74 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129 ++A VD + L K PG T +L+ TT + P N K R+P +++ Sbjct: 75 SEYAKVDNNTFKLMKRNLPGAFTFILN--GTTRL-PKIFRNRKEVGIRMPDNAIIQEIAR 131 Query: 130 TYGHPL---AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 P+ +P T+ ++ + L+IDGGI G ES+ + V C Sbjct: 132 VLDAPIMTTTLPHEEHEDMEYCTD-PELIDEKFGDLVDLVIDGGIG--GTESSTI-VDCT 187 Query: 187 K-KVRILRPG 195 + I+R G Sbjct: 188 NGETEIVRQG 197 >gi|325578257|ref|ZP_08148392.1| Sua5/YciO/YrdC/YwlC family protein [Haemophilus parainfluenzae ATCC 33392] gi|325159993|gb|EGC72122.1| Sua5/YciO/YrdC/YwlC family protein [Haemophilus parainfluenzae ATCC 33392] Length = 207 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 53/191 (27%), Positives = 83/191 (43%), Gaps = 15/191 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E L G I PT++ Y L + A+ R+ I+K P + SD+S + Sbjct: 17 INQAVEILRQGGVIVYPTDSGYALGCMIGDKHAMDRIVAIRKLPEGHNFTLVCSDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A+V ++ L K PG T +L +T ++ L T+ KT RVP L++ Sbjct: 77 TYATVSNVAYRLIKNNTPGRYTFILT--ATKELPRRLMTSKRKTIGLRVPDNQIALDLLK 134 Query: 130 TYGHP-----LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 G P L +P ++ L +++ LII GG +G E T V Sbjct: 135 ALGEPILSCSLMLPDNEHMTYSDPEEIRECLE----RQVDLIIHGGY--LGQEPTTVVDL 188 Query: 185 CEKKVRILRPG 195 E+ ILR G Sbjct: 189 TEESPVILREG 199 >gi|169796996|ref|YP_001714789.1| hypothetical protein ABAYE2997 [Acinetobacter baumannii AYE] gi|184157091|ref|YP_001845430.1| putative translation factor (SUA5) [Acinetobacter baumannii ACICU] gi|213156599|ref|YP_002318260.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter baumannii AB0057] gi|215484458|ref|YP_002326691.1| yrdC domain protein [Acinetobacter baumannii AB307-0294] gi|260555712|ref|ZP_05827932.1| yrdC domain-containing protein [Acinetobacter baumannii ATCC 19606] gi|301348043|ref|ZP_07228784.1| yrdC domain protein [Acinetobacter baumannii AB056] gi|301510847|ref|ZP_07236084.1| yrdC domain protein [Acinetobacter baumannii AB058] gi|301594335|ref|ZP_07239343.1| yrdC domain protein [Acinetobacter baumannii AB059] gi|332852084|ref|ZP_08433911.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter baumannii 6013150] gi|332867482|ref|ZP_08437635.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter baumannii 6013113] gi|332872667|ref|ZP_08440635.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter baumannii 6014059] gi|169149923|emb|CAM87817.1| conserved hypothetical protein [Acinetobacter baumannii AYE] gi|183208685|gb|ACC56083.1| putative translation factor (SUA5) [Acinetobacter baumannii ACICU] gi|193076588|gb|ABO11251.2| hypothetical protein A1S_0813 [Acinetobacter baumannii ATCC 17978] gi|213055759|gb|ACJ40661.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter baumannii AB0057] gi|213987507|gb|ACJ57806.1| yrdC domain protein [Acinetobacter baumannii AB307-0294] gi|260410623|gb|EEX03921.1| yrdC domain-containing protein [Acinetobacter baumannii ATCC 19606] gi|322506990|gb|ADX02444.1| putative translation factor (SUA5) [Acinetobacter baumannii 1656-2] gi|323516857|gb|ADX91238.1| putative translation factor (SUA5) [Acinetobacter baumannii TCDC-AB0715] gi|332729456|gb|EGJ60795.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter baumannii 6013150] gi|332733899|gb|EGJ65044.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter baumannii 6013113] gi|332739196|gb|EGJ70055.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter baumannii 6014059] Length = 205 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/188 (24%), Positives = 80/188 (42%), Gaps = 10/188 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E + AG + PT+ Y + N A+ R+ +I+ + D+S + Sbjct: 16 IEQAVERIRAGDVVVYPTDAAYAIGCQIGNKNAMERIAQIRGLGPKHQYAIMCCDLSDIA 75 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127 +A VD + L K P T +L S +HP KT R+P + L Sbjct: 76 TYAKVDNATYRLLKANTPAITTFILPATSEVPRRLMHP----KKKTIGLRIPSNPICQAL 131 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ G PL + GQ + + + + + K I + IDGG + ++IV++ E Sbjct: 132 LKELGEPLLTSTLILPGQEDPLDDPYDIENQLAKRIDVFIDGGFGTL-TTTSIVDLSGEH 190 Query: 188 KVRILRPG 195 I+R G Sbjct: 191 P-EIIRRG 197 >gi|87300985|ref|ZP_01083827.1| hypothetical protein WH5701_06035 [Synechococcus sp. WH 5701] gi|87284856|gb|EAQ76808.1| hypothetical protein WH5701_06035 [Synechococcus sp. WH 5701] Length = 213 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 47/133 (35%), Positives = 63/133 (47%), Gaps = 9/133 (6%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS--MVKKHA 74 E++ AG P PT+T+ LA A +++E+K RP+ PLI S+ Sbjct: 24 EWILAGGPAIFPTDTLPALAALP---AAAGQIWELKSRPSNKPLILMGSEPETLFAALEL 80 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLST--TDIHPLSTANLKTACFRVP-CGFTKKLIETY 131 S P L LA+ WPG LTLVL + P A R+P C ++L+ Sbjct: 81 SPRPQWLELAERCWPGALTLVLPARGAVVAALQPGVVAAEARLGLRIPACERARELLRRT 140 Query: 132 GHPLAIPSANRSG 144 G PLA SANRSG Sbjct: 141 G-PLATTSANRSG 152 >gi|300865647|ref|ZP_07110419.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506] gi|300336348|emb|CBN55569.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506] Length = 197 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 86/189 (45%), Gaps = 25/189 (13%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHL- 83 I+ PT+TV LAV P A ++ KKR PLI + + + + P L + Sbjct: 20 ISFPTDTVPALAV---RPEASELIFTTKKRDREKPLILMGATPEHLWPYITGTPEQLQIW 76 Query: 84 ---AKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVP-CGFTKKLIETYGHPLAIP 138 A WPG LTLVL ++ + P ++ + T RVP +K+++ G PLA Sbjct: 77 QQIAASHWPGALTLVLP--ASPKVPPAMNPTDPTTIGLRVPNLAIAQKILQQTG-PLATT 133 Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKI-------GLESTIVNVQCEKKVRI 191 SAN SGQ + ++ I + P ++ S++ GL ST+ I Sbjct: 134 SANLSGQPPLET-----AAEIQQNFPEVLTLEASELKTTTTASGLPSTVAK-WSGNSWEI 187 Query: 192 LRPGGLEIE 200 LR G +E++ Sbjct: 188 LRQGAVELK 196 >gi|329894846|ref|ZP_08270646.1| Sua5 YciO YrdC YwlC family protein [gamma proteobacterium IMCC3088] gi|328922740|gb|EGG30074.1| Sua5 YciO YrdC YwlC family protein [gamma proteobacterium IMCC3088] Length = 173 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 51/189 (26%), Positives = 77/189 (40%), Gaps = 20/189 (10%) Query: 18 FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77 L G IA PTE V+GL D N A+ RL +K+RP LI +++ + Sbjct: 1 MLARGGVIAYPTEGVWGLGCDPLNKRAVERLLALKERPWQKGLIVALANEGVADTLLRTL 60 Query: 78 PLSLHLA-KLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVPCGFTKKLIETYGHP 134 P A K WPGP T L+ D+ P ++ + AC + L G Sbjct: 61 PQDRKNAIKATWPGPNTW---LVPHDDLWPSWVTGESDFIACRLSAYAVVRDLARAAGGA 117 Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194 + SAN +GQ+ + + + + I+ G VQ +K ++R Sbjct: 118 IISTSANPAGQVPAMTAQAV-RQYFGRSVDFIMPG------------RVQGLQKPSVIRH 164 Query: 195 GGLEIETLK 203 GL ETL+ Sbjct: 165 -GLTGETLR 172 >gi|56478937|ref|YP_160526.1| putative translation factor YrdC/SUA5 [Aromatoleum aromaticum EbN1] gi|56314980|emb|CAI09625.1| putative translation factor YrdC/SUA5 [Aromatoleum aromaticum EbN1] Length = 209 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 83/178 (46%), Gaps = 18/178 (10%) Query: 12 LRKACEFLDAGLPIAIPTETVY---GLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +R+A E + +G + PT++ Y GLA D+ IRR+ + +R L+C D+S Sbjct: 17 IRQAAEIMRSGGLVTFPTDSAYALGGLAGDASVLLRIRRIRGVDERHHFT-LMCR--DLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLD---LLSTTDIHPLSTANLKTACFRVPCG-FT 124 + +A VD + L K PGP T +L+ L +HP KT RVP Sbjct: 74 EIATYARVDNMQYRLLKATTPGPYTFILEGTKELPRRVLHP----KRKTIGLRVPDHPVV 129 Query: 125 KKLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 L+ P+ + G+ + +T+ + I + K++ L+I+ G G E+T V Sbjct: 130 AALLAELDEPILTSTLLLPGEDLPLTDAEEI-RDRMEKQVELVIEAGFC--GPEATTV 184 >gi|126668173|ref|ZP_01739134.1| hypothetical protein MELB17_23665 [Marinobacter sp. ELB17] gi|126627322|gb|EAZ97958.1| hypothetical protein MELB17_23665 [Marinobacter sp. ELB17] Length = 190 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 47/193 (24%), Positives = 84/193 (43%), Gaps = 17/193 (8%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 +TD L A L G +A PTE V+GL D N A++R+ ++K+RP +I + Sbjct: 7 LTDWQ-LHCARRTLHQGGVLAYPTEAVWGLGCDPWNQVAVQRILDLKQRPVHKGMILVAA 65 Query: 66 DISMVKKHASVDPLSLHL---AKLFWPGPLTLVLDLLSTTDIHPLSTANLK----TACFR 118 + + ++PL L A+ WPGP+T +L D+H ++ + R Sbjct: 66 SVEQIV--FLLNPLPQDLQQRARQHWPGPVTCLL-----PDVHQQVPEWVRGEHSSIAVR 118 Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 V K L G PL S N +G+ + + ++ ++ G + Sbjct: 119 VSAHPVVKALCNAVGSPLVSTSCNPAGRAPARSPWQV-QGYFHGQLDWVVPGALGGNRQP 177 Query: 178 STIVNVQCEKKVR 190 S I+++ +++R Sbjct: 178 SRIIDIVTGQQLR 190 >gi|126657314|ref|ZP_01728473.1| hypothetical protein CY0110_00105 [Cyanothece sp. CCY0110] gi|126621301|gb|EAZ92013.1| hypothetical protein CY0110_00105 [Cyanothece sp. CCY0110] Length = 199 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 44/136 (32%), Positives = 60/136 (44%), Gaps = 12/136 (8%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 I+ PT+TV LA P + ++ KKRP PLI S + K+ P + Sbjct: 19 ISFPTDTVPALAAL---PESASLIFATKKRPPDKPLILMGSSSEAIWKYVKGTPEEFRIW 75 Query: 85 KL----FWPGPLTLVL--DLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIP 138 + +WPG LTLVL L I+PL + T R+P + I LA Sbjct: 76 EKIVNKYWPGQLTLVLPASELVPQGINPLDPS---TIGVRIPNSIIAQNILKQTGCLATT 132 Query: 139 SANRSGQISITNVKHI 154 SAN SG+ I N+ I Sbjct: 133 SANLSGEPPIENLSDI 148 >gi|296135809|ref|YP_003643051.1| Sua5/YciO/YrdC/YwlC family protein [Thiomonas intermedia K12] gi|294339974|emb|CAZ88337.1| putative RNA-binding protein, yciO [Thiomonas sp. 3As] gi|295795931|gb|ADG30721.1| Sua5/YciO/YrdC/YwlC family protein [Thiomonas intermedia K12] Length = 211 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 73/161 (45%), Gaps = 4/161 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A L +G AIPT++ Y L + A++RL +I++ + L SD+S + Sbjct: 17 IKQAAAVLHSGGVAAIPTDSSYALVCHLDDKAAVQRLRQIRQVDERHHLTLLCSDLSELG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129 +A VD L + PGP T +L+ +T ++ +S + KT RVP L+ Sbjct: 77 NYARVDNRQYRLIRACTPGPYTFILE--ATKEVPRRVSHPSRKTIGVRVPQNAVAHTLLV 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 PL + G N + + ++ L++D G Sbjct: 135 EMAQPLLATTLILPGDEHALNDAADIRDQLEHQVDLVLDAG 175 >gi|303257826|ref|ZP_07343836.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderiales bacterium 1_1_47] gi|302859429|gb|EFL82510.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderiales bacterium 1_1_47] Length = 207 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/186 (24%), Positives = 84/186 (45%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + L G A+ T+T + L + A+ ++ I++ +S + Sbjct: 17 IEQAAKLLTKGQVAAVSTDTGFSLVCRLDDKEALDKIRLIRQLSEKKHFTLFCDSLSQMS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCGFT-KKLIE 129 K A V+ +AK PGP T +L+ +T ++ LS + KT RVP L+E Sbjct: 77 KLARVNNTGYRMAKSVTPGPYTFILE--ATKEVPRRLSHPSKKTIGLRVPSNKALHALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL + G+ + + I ++ I+D G S IG ++T+V++ ++ Sbjct: 135 KIGEPLVGTTVIMPGEEEPLSSAWEIQDRIGDQLAFILDDGTSVIG-DTTVVDLSGDEP- 192 Query: 190 RILRPG 195 ++R G Sbjct: 193 EVIREG 198 >gi|254428427|ref|ZP_05042134.1| Sua5/YciO/YrdC/YwlC family protein [Alcanivorax sp. DG881] gi|196194596|gb|EDX89555.1| Sua5/YciO/YrdC/YwlC family protein [Alcanivorax sp. DG881] Length = 207 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 48/196 (24%), Positives = 92/196 (46%), Gaps = 11/196 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP--LICHVSDISM 69 +R+A + + +G IA PT+T Y L A+ RL +++ + L+CH D+S Sbjct: 17 IRQAVDVIRSGGLIAYPTDTTYALGCGIGEKAALDRLIRLRQLDKKHEFTLLCH--DLSA 74 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKKL 127 + +A VD L K PG T +L TT++ L +T RVP + L Sbjct: 75 LAIYAKVDNPDYRLLKAHTPGAYTFILQ--GTTEVPRRLMHPKKRTIGIRVPDHAICQAL 132 Query: 128 IETYGHPLAIPSANR-SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 + +G P+ + + + + +T+ + + + + L+IDGG E+T++++ Sbjct: 133 LAEHGEPIMTSTCHLPNDEFPLTDPQDV-RDFLENHVDLVIDGGFCGT-TETTVISLSEG 190 Query: 187 KKVRILRPGGLEIETL 202 + ++R G I+ + Sbjct: 191 EGPVVVREGAGPIDAI 206 >gi|308390230|gb|ADO32550.1| hypothetical protein NMBB_2449 [Neisseria meningitidis alpha710] gi|325129260|gb|EGC52099.1| protein RimN [Neisseria meningitidis OX99.30304] gi|325135372|gb|EGC57993.1| YrdC domain, putative [Neisseria meningitidis M0579] gi|325203123|gb|ADY98577.1| protein RimN [Neisseria meningitidis M01-240149] gi|325207044|gb|ADZ02497.1| protein RimN [Neisseria meningitidis M04-240196] gi|325208992|gb|ADZ04444.1| protein RimN [Neisseria meningitidis NZ-05/33] Length = 200 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/187 (24%), Positives = 81/187 (43%), Gaps = 5/187 (2%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I ++A RK +L G +A PTE+ YGL A+ +L +KKRP +I + Sbjct: 17 IIAASAQRKLSVYLKKGGLVAYPTESCYGLGCLPTLAKALGKLAHLKKRPQHKGMIVIGN 76 Query: 66 DISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF- 123 ++ + +L + + WP P T +L S + L RVP Sbjct: 77 QFEQLQPLLQMPSENLQDMLRKEWPAPKTFLLSAKSCV-LPELRGKQRSKLAVRVPAHVG 135 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 ++L + PL S NR+G+ + + + +++ I+ G I + S I++ Sbjct: 136 ARRLCQALQTPLVSTSCNRAGKRACRTEREV-RRQFGRDV-WIVGGRIGRQKSPSQIIDG 193 Query: 184 QCEKKVR 190 + K++R Sbjct: 194 ETGKRLR 200 >gi|240081874|ref|ZP_04726417.1| hypothetical protein NgonF_11291 [Neisseria gonorrhoeae FA19] gi|240127157|ref|ZP_04739818.1| hypothetical protein NgonS_00622 [Neisseria gonorrhoeae SK-93-1035] gi|212288270|sp|Q5F5I5|RIMN_NEIG1 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN Length = 189 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 47/193 (24%), Positives = 87/193 (45%), Gaps = 7/193 (3%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I ++A RK +L G +A PTE+ YGL A+ +L +KKRP + Sbjct: 1 MLFSRIIAASAQRKLSVYLKKGGLVAYPTESCYGLGCLPTLAKALGKLAHLKKRPQHKGM 60 Query: 61 ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFR 118 I + + ++ + ++ + + WP P T + LL+ + + P L R Sbjct: 61 IVIGNQLEQLQPLLQMPSENIQTMLRNEWPAPKTFL--LLAKSGVLPALRGKRRSKLAVR 118 Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 VP ++L + G PL S NR+G+ + + + +++ I+ G I + Sbjct: 119 VPDHTGARRLCQALGMPLVSTSCNRAGKRACRTEREV-RRQFGRDV-WIVGGRIGRQKSP 176 Query: 178 STIVNVQCEKKVR 190 S I++ + K++R Sbjct: 177 SQIIDGETGKRLR 189 >gi|333029883|ref|ZP_08457944.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides coprosuis DSM 18011] gi|332740480|gb|EGJ70962.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides coprosuis DSM 18011] Length = 203 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 58/209 (27%), Positives = 90/209 (43%), Gaps = 21/209 (10%) Query: 3 IMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAM 57 +M + DSN +++ + L+ G I PT+T+Y + AI ++ EIK P Sbjct: 2 LMKLYDSNNDPQKIQQVIDILNDGGIIIYPTDTMYAIGCHCMKERAIEQICEIKGIDPRK 61 Query: 58 N--PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115 N LIC+ D+S + ++A + + K PGP T + L+ T+ P N K Sbjct: 62 NNLSLICY--DLSTISEYAKMSNTVFKIMKANLPGPFTFI---LNGTNKLPKIFRNRKEV 116 Query: 116 CFRVP-----CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 R+P TK L E +P +TN ++ K + L+IDGG Sbjct: 117 GIRMPNNEIIMDITKAL-EFPIMTTTVPLGENEDTGFLTN-PELIYEKFGKIVDLVIDGG 174 Query: 171 ISKIGLESTIVNVQCEKKVRILRPGGLEI 199 STIV+ + V I R G E+ Sbjct: 175 TGDYS-ASTIVDCTGD-YVEIARQGKGEL 201 >gi|260582127|ref|ZP_05849921.1| SUA5 protein [Haemophilus influenzae NT127] gi|260094759|gb|EEW78653.1| SUA5 protein [Haemophilus influenzae NT127] Length = 207 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 53/191 (27%), Positives = 83/191 (43%), Gaps = 15/191 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E L G I PT++ Y L + A+ R+ I+K + SD+S + Sbjct: 17 INQAVEILQKGGVIVYPTDSGYALGCMMGDKHAMDRIVAIRKLTEGHNFTLVCSDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A+V+ + L K PG T +L +T ++ L T+ KT RVP L+ Sbjct: 77 TYATVNNTAYRLIKNNTPGRYTFILT--ATKELPRRLMTSKRKTIGLRVPDNKIALDLLS 134 Query: 130 TYGHP-----LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 G P L +P+ + Q ++ L ++ LII GG +G E T V Sbjct: 135 ALGEPILSCSLMLPNEEHTTQSDPEEIRDRLE----HQVDLIIHGGY--LGQEPTTVVDL 188 Query: 185 CEKKVRILRPG 195 E+ ILR G Sbjct: 189 TEESPVILREG 199 >gi|330811305|ref|YP_004355767.1| hypothetical protein PSEBR_a4356 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379413|gb|AEA70763.1| Conserved hypothetical protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 209 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/188 (22%), Positives = 82/188 (43%), Gaps = 10/188 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E + G + PT++ Y + + A+ R+ +++ + SD+S + Sbjct: 17 IKQAVEIIRGGGVVVYPTDSSYAIGCQIGDKNAVERVRRLRQLDDKHNFALICSDLSQLG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127 A +D + L K PGP T +L+ +HP +T RVP L Sbjct: 77 LFAKIDTGTFRLLKAHLPGPYTFILNATREVPRLLLHP----KKRTIGLRVPSHPIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + G+ + + + ++ LIIDGG + ST++N+ + Sbjct: 133 LAELGEPLMSVTLIMPGESEPLTDPYEMRQILEHQVDLIIDGGFGGMS-ASTVINL-ADG 190 Query: 188 KVRILRPG 195 + +++R G Sbjct: 191 EPQVVRVG 198 >gi|254804056|ref|YP_003082277.1| putative translation factor [Neisseria meningitidis alpha14] gi|254667598|emb|CBA03357.1| putative translation factor [Neisseria meningitidis alpha14] gi|316984513|gb|EFV63479.1| ribosome maturation factor [Neisseria meningitidis H44/76] gi|325127245|gb|EGC50183.1| protein RimN [Neisseria meningitidis N1568] gi|325139460|gb|EGC62000.1| protein RimN [Neisseria meningitidis CU385] gi|325201186|gb|ADY96641.1| protein RimN [Neisseria meningitidis H44/76] Length = 200 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/187 (24%), Positives = 81/187 (43%), Gaps = 5/187 (2%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I ++A RK +L G +A PTE+ YGL A+ +L +KKRP +I + Sbjct: 17 IIAASAQRKLSVYLKKGGLVAYPTESCYGLGCLPTLAKALGKLAHLKKRPQHKGMIVIGN 76 Query: 66 DISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF- 123 ++ + +L + + WP P T +L S + L RVP Sbjct: 77 QFEQLQPLLQMPSENLQDMLRKEWPAPKTFLLSAKSCV-LPELRGKQRSKLAVRVPAHVG 135 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 ++L + PL S NR+G+ + + + +++ I+ G I + S I++ Sbjct: 136 ARRLCQALQTPLVSTSCNRAGKRACRTEREV-RRQFGRDV-WIVGGRIGRQKSPSQIIDG 193 Query: 184 QCEKKVR 190 + K++R Sbjct: 194 ETGKRLR 200 >gi|224538268|ref|ZP_03678807.1| hypothetical protein BACCELL_03159 [Bacteroides cellulosilyticus DSM 14838] gi|224520128|gb|EEF89233.1| hypothetical protein BACCELL_03159 [Bacteroides cellulosilyticus DSM 14838] Length = 204 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 52/192 (27%), Positives = 82/192 (42%), Gaps = 17/192 (8%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSDISMV 70 L++ + L+ G I PT+T+Y + AI R+ IK+ P N L D+S + Sbjct: 15 LQQVVDILNDGGLIIYPTDTMYAIGCHGLKERAIERICRIKEIDPRKNNLSIICYDLSSI 74 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130 ++A VD + L K PG T +L+ TT + P N K R+P +I+ Sbjct: 75 SEYAKVDNNTFKLMKRNLPGAFTFILN--GTTRL-PKIFRNRKEVGIRMP---DNAIIQE 128 Query: 131 YGHPLAIPSANRS------GQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNV 183 L P + I ++ + L+IDGGI G E STIV+ Sbjct: 129 IARILDAPIMTTTLPHEAHEDIEYCTDPELIDEKFGDLVDLVIDGGIG--GTEFSTIVDC 186 Query: 184 QCEKKVRILRPG 195 ++ ++R G Sbjct: 187 T-SGEIEVIRQG 197 >gi|302879854|ref|YP_003848418.1| SUA5/yciO/yrdC domain [Gallionella capsiferriformans ES-2] gi|302582643|gb|ADL56654.1| SUA5/yciO/yrdC domain [Gallionella capsiferriformans ES-2] Length = 184 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 35/63 (55%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 + R +L +G IA PTE+ YGL D N +A+R+L +K+RP LI SD + Sbjct: 7 SFRSIAAYLKSGGLIAYPTESCYGLGCDPLNRSAVRKLLRLKQRPQAKGLILIASDYRQL 66 Query: 71 KKH 73 ++ Sbjct: 67 ARY 69 >gi|256424924|ref|YP_003125577.1| Sua5/YciO/YrdC/YwlC family protein [Chitinophaga pinensis DSM 2588] gi|256039832|gb|ACU63376.1| Sua5/YciO/YrdC/YwlC family protein [Chitinophaga pinensis DSM 2588] Length = 189 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/194 (23%), Positives = 92/194 (47%), Gaps = 16/194 (8%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 N + + + L +G I PT+T++G+ D+ + A+++++ +K RP L+ ++D+ Sbjct: 6 NDISASLQVLRSGGLILYPTDTIWGIGCDATDEAAVKKVFTLKDRPEAKSLVILLADVRD 65 Query: 70 VKKHASVDPLSLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKK 126 + K+ + P S +A + + P T++ + D+ P + T R V F + Sbjct: 66 LLKYVA-HP-SPEIADILAGFDRPTTVIYE--GALDLAPNVINSDGTVAIRIVKDTFCRH 121 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL-ESTIVNVQC 185 LI+ PL SAN SGQ S ++ + P II+G + + Q Sbjct: 122 LIKRLRKPLVSTSANLSGQPS--------PATFAEVSPEIINGVDYVVSYRQDDTTPAQA 173 Query: 186 EKKVRILRPGGLEI 199 + +++L+ G +++ Sbjct: 174 SRIIKLLKDGSVQV 187 >gi|291326241|ref|ZP_06123711.2| Sua5/YciO/YrdC/YwlC family protein [Providencia rettgeri DSM 1131] gi|291315158|gb|EFE55611.1| Sua5/YciO/YrdC/YwlC family protein [Providencia rettgeri DSM 1131] Length = 220 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 74/172 (43%), Gaps = 6/172 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + ++ E L+ G I PT++ Y + A++R+ I++ A + D+S + Sbjct: 31 ISQSVEILNKGGVIVYPTDSGYAIGCRLEEKDALQRICRIRQLDANHNFTLMCRDLSELS 90 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD L K PG T + L +T ++ L KT RVP + L+E Sbjct: 91 NYAHVDNTVFRLIKNNTPGNYTFI--LRATKEVPRRLMNEKRKTIGLRVPSNPIARDLLE 148 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 G PL S G + + + K++ L+I GG IG + T V Sbjct: 149 AVGEPLMSTSLIMPGDDFTQSDPEEIRDLLDKQVDLVIHGGY--IGQKPTTV 198 >gi|317048305|ref|YP_004115953.1| Sua5/YciO/YrdC/YwlC family protein [Pantoea sp. At-9b] gi|316949922|gb|ADU69397.1| Sua5/YciO/YrdC/YwlC family protein [Pantoea sp. At-9b] Length = 206 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 47/187 (25%), Positives = 83/187 (44%), Gaps = 8/187 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A ++L+ G I PT++ Y L A+ R+ I++ + D+S + Sbjct: 17 VNQAVDYLNKGGVIVYPTDSGYALGCRLEEKNAMERICRIRQLDGHHNFTLMCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 ++ VD + + K PG T +L +T ++ L KT RVP L+E Sbjct: 77 TYSQVDNSAFRIIKNNTPGSYTFILK--ATKEVPRRLMNDKRKTIGLRVPSNPVALALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKK 188 P+ S G + + SI K + LIIDGG +G + +T+V++ + Sbjct: 135 ALNEPMMSTSLMLPGNDFTESDPEEIQHSIGKLVDLIIDGG--TLGQQPTTVVDLTSDAP 192 Query: 189 VRILRPG 195 + I+R G Sbjct: 193 I-IVREG 198 >gi|198284016|ref|YP_002220337.1| SUA5/yciO/yrdC domain [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666682|ref|YP_002426660.1| Sua5/YciO/YrdC family protein [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248537|gb|ACH84130.1| SUA5/yciO/yrdC domain [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518895|gb|ACK79481.1| Sua5/YciO/YrdC family protein [Acidithiobacillus ferrooxidans ATCC 23270] Length = 186 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 1/85 (1%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +R+ + G IA PTE V+GL D R A+ R+ +K RP ++ + + Sbjct: 11 IRRGVAHIRRGGVIAYPTEGVWGLGCDPRRRRALHRILALKGRPRFKGVLLVAGRTAETR 70 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVL 96 ++ S L FWPG TLVL Sbjct: 71 RYWSAQGTDQALLARFWPG-TTLVL 94 >gi|121635793|ref|YP_976038.1| hypothetical protein NMC2128 [Neisseria meningitidis FAM18] gi|218767259|ref|YP_002341771.1| hypothetical protein NMA0237 [Neisseria meningitidis Z2491] gi|120867499|emb|CAM11276.1| hypothetical protein NMC2128 [Neisseria meningitidis FAM18] gi|121051267|emb|CAM07543.1| hypothetical protein NMA0237 [Neisseria meningitidis Z2491] gi|254671287|emb|CBA08623.1| conserved hypothetical protein [Neisseria meningitidis alpha153] gi|254672629|emb|CBA06396.1| conserved hypothetical protein [Neisseria meningitidis alpha275] gi|319411465|emb|CBY91881.1| putative RNA-binding protein [Neisseria meningitidis WUE 2594] gi|325131234|gb|EGC53946.1| protein RimN [Neisseria meningitidis M6190] gi|325133318|gb|EGC55984.1| protein RimN [Neisseria meningitidis M13399] gi|325137408|gb|EGC59996.1| protein RimN [Neisseria meningitidis ES14902] gi|325143385|gb|EGC65714.1| protein RimN [Neisseria meningitidis 961-5945] gi|325143552|gb|EGC65873.1| protein RimN [Neisseria meningitidis M01-240013] gi|325199224|gb|ADY94680.1| protein RimN [Neisseria meningitidis G2136] Length = 200 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/187 (24%), Positives = 81/187 (43%), Gaps = 5/187 (2%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I ++A RK +L G +A PTE+ YGL A+ +L +KKRP +I + Sbjct: 17 IIAASAQRKLSVYLKKGGLVAYPTESCYGLGCLPTLAKALGKLAHLKKRPQHKGMIVIGN 76 Query: 66 DISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF- 123 ++ + +L + + WP P T +L S + L RVP Sbjct: 77 QFEQLQPLLQMPSENLQDMLRKEWPAPKTFLLSAKSCV-LPELRGKQRSKLAVRVPAHVG 135 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 ++L + PL S NR+G+ + + + +++ I+ G I + S I++ Sbjct: 136 ARRLCQALQTPLVSTSCNRAGKRACRTEREV-RRQFGRDV-WIVGGRIGRQKSPSQIIDG 193 Query: 184 QCEKKVR 190 + K++R Sbjct: 194 ETGKRLR 200 >gi|59802252|ref|YP_208964.1| hypothetical protein NGO1940 [Neisseria gonorrhoeae FA 1090] gi|194099801|ref|YP_002002936.1| hypothetical protein NGK_2311 [Neisseria gonorrhoeae NCCP11945] gi|240013077|ref|ZP_04719990.1| hypothetical protein NgonD_00200 [Neisseria gonorrhoeae DGI18] gi|240122267|ref|ZP_04735229.1| hypothetical protein NgonPI_10985 [Neisseria gonorrhoeae PID24-1] gi|268597971|ref|ZP_06132138.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268685513|ref|ZP_06152375.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] gi|293398025|ref|ZP_06642231.1| translation factor [Neisseria gonorrhoeae F62] gi|59719147|gb|AAW90552.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090] gi|193935091|gb|ACF30915.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945] gi|268551759|gb|EEZ46778.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268625797|gb|EEZ58197.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] gi|291611971|gb|EFF41040.1| translation factor [Neisseria gonorrhoeae F62] Length = 200 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 48/194 (24%), Positives = 88/194 (45%), Gaps = 9/194 (4%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I ++A RK +L G +A PTE+ YGL A+ +L +KKRP + Sbjct: 12 MLFSRIIAASAQRKLSVYLKKGGLVAYPTESCYGLGCLPTLAKALGKLAHLKKRPQHKGM 71 Query: 61 ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFR 118 I + + ++ + ++ + + WP P T + LL+ + + P L R Sbjct: 72 IVIGNQLEQLQPLLQMPSENIQTMLRNEWPAPKTFL--LLAKSGVLPALRGKRRSKLAVR 129 Query: 119 VP--CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 VP G ++L + G PL S NR+G+ + + + +++ I+ G I + Sbjct: 130 VPDHTG-ARRLCQALGMPLVSTSCNRAGKRACRTEREV-RRQFGRDV-WIVGGRIGRQKS 186 Query: 177 ESTIVNVQCEKKVR 190 S I++ + K++R Sbjct: 187 PSQIIDGETGKRLR 200 >gi|296313775|ref|ZP_06863716.1| protein RimN [Neisseria polysaccharea ATCC 43768] gi|296839703|gb|EFH23641.1| protein RimN [Neisseria polysaccharea ATCC 43768] Length = 200 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/187 (24%), Positives = 81/187 (43%), Gaps = 5/187 (2%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I ++A RK +L G +A PTE+ YGL A+ +L +KKRP +I + Sbjct: 17 IIAASAQRKLSVYLKKGGLVAYPTESCYGLGCLPTLAKALGKLAHLKKRPQHKGMIVIGN 76 Query: 66 DISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF- 123 ++ + +L + + WP P T +L S + L RVP Sbjct: 77 QFEQLQPLLQMPSENLQAMLRKEWPAPKTFLLSAKSCV-LPELRGKQRSKLAVRVPAHVG 135 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 ++L + PL S NR+G+ + + + +++ I+ G I + S I++ Sbjct: 136 ARRLCQALQTPLVSTSCNRAGKRACRTEREV-RRQFGRDV-WIVGGRIGRQKSPSQIIDG 193 Query: 184 QCEKKVR 190 + K++R Sbjct: 194 ETGKRLR 200 >gi|260768729|ref|ZP_05877663.1| YrdC family protein [Vibrio furnissii CIP 102972] gi|260616759|gb|EEX41944.1| YrdC family protein [Vibrio furnissii CIP 102972] gi|315180432|gb|ADT87346.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio furnissii NCTC 11218] Length = 206 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 44/184 (23%), Positives = 79/184 (42%), Gaps = 6/184 (3%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 +A + G + PT++ Y L N A+ R+ +I++ + D+S + + Sbjct: 19 QAVAIIRNGGVVVYPTDSGYALGCQLENKHALERICQIRRLDDKHNFTLMCRDLSELSLY 78 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIETY 131 A VD + L K PGP T + T ++ L A KT RVP L+E Sbjct: 79 ARVDNTAFRLLKNNTPGPYTFIFK--GTKEVPRRLMNAKRKTIGIRVPNNQIALDLLEAM 136 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 G PL S G + + + + + +I++GG +G + T V + ++++ Sbjct: 137 GEPLMSTSLILPGNETTESDPEEIRDRLEHAVDVILNGGY--LGEQPTTVVDFSDDEMQV 194 Query: 192 LRPG 195 +R G Sbjct: 195 VRFG 198 >gi|330470257|ref|YP_004408000.1| hypothetical protein VAB18032_01580 [Verrucosispora maris AB-18-032] gi|328813228|gb|AEB47400.1| hypothetical protein VAB18032_01580 [Verrucosispora maris AB-18-032] Length = 238 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/198 (20%), Positives = 89/198 (44%), Gaps = 13/198 (6%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L+ G + +P++T Y +A+ N + + + + +RP P+ S + V+ + ++ Sbjct: 31 LNQGGFVLLPSDTCYSIALVPHNEDSWKFINSLLRRPVDRPVSVAFSGLDQVRGYLELNA 90 Query: 79 LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANL----KTACFRVPCGFTKKLIETYGH- 133 +LHL + F PGP+TLV + H + + +T FR+P ++ + ++ Sbjct: 91 TALHLVERFTPGPITLVCP--ANQRAHKFAAKSTGSPDRTLGFRIPDSKIERDVASHARW 148 Query: 134 PLAIPSANRSGQISITNVKHILS------SSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 P+ + + + L +++ ++G S ST+V V Sbjct: 149 PITTTAVRDKRDEPVQSFDEALKIVTAAAAAVGSARWHAVEGRDSFYSKHSTVVRVDQSG 208 Query: 188 KVRILRPGGLEIETLKRA 205 +V ++R G + ET++++ Sbjct: 209 EVGLIREGDIPFETIRQS 226 >gi|282899761|ref|ZP_06307724.1| Sua5/YciO/YrdC/YwlC [Cylindrospermopsis raciborskii CS-505] gi|281195376|gb|EFA70310.1| Sua5/YciO/YrdC/YwlC [Cylindrospermopsis raciborskii CS-505] Length = 217 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 81/191 (42%), Gaps = 14/191 (7%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L G + PT+TVY + D +A+ R+ +IK+ PL +S V +A V Sbjct: 24 LSGGAVMLYPTDTVYAIGCDLNAKSAVERVKKIKRLANDKPLTFLCPSLSRVATYAFVSD 83 Query: 79 LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTAN--LKTACFRVPC-GFTKKLIETYGHPL 135 ++ + K PGP T LL T + P N KT RVP L+E+ G+P+ Sbjct: 84 IAYRIMKSLIPGPYTF---LLPATKLVPRLVQNPKRKTTGIRVPNHHLCLALLESLGNPI 140 Query: 136 AIPSA--------NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 SA + + I I K L + + +IID G STI+++ + Sbjct: 141 ISTSAHLPLHDMDDLNVDIDIHPSKMDLFDRLDSLVDIIIDTGEEPKNQVSTILDLTDNQ 200 Query: 188 KVRILRPGGLE 198 + + G E Sbjct: 201 PIITRKGMGWE 211 >gi|227538481|ref|ZP_03968530.1| possible translation factor, Sua5 [Sphingobacterium spiritivorum ATCC 33300] gi|227241667|gb|EEI91682.1| possible translation factor, Sua5 [Sphingobacterium spiritivorum ATCC 33300] Length = 191 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 47/193 (24%), Positives = 84/193 (43%), Gaps = 6/193 (3%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 M+ D + KA E L G I PT+T++G+ D+ NP A+ R+ ++K R +I Sbjct: 1 MTPIDREDINKALETLKNGGLILYPTDTIWGIGCDATNPEAVDRVIQLKGRSKEKSMIVL 60 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCG 122 + + + + + + P + + PLT+V + ++ + A + R V Sbjct: 61 LHNENQLAGYVNDIPEVAYQLIEYTEHPLTIVYS--NAKNLAANAIAEDGSIGIRIVNHP 118 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL--ESTI 180 F +L++ + P+ SAN SG+ S I I + + G IG STI Sbjct: 119 FCTQLLQRFRKPIISTSANISGEPSAKTFGDI-DQKIKDGVDYTVQFGQKDIGAGKASTI 177 Query: 181 VNVQCEKKVRILR 193 + + K +R Sbjct: 178 MKLDPSGKFEFIR 190 >gi|330998752|ref|ZP_08322480.1| Sua5/YciO/YrdC/YwlC family protein [Parasutterella excrementihominis YIT 11859] gi|329576249|gb|EGG57765.1| Sua5/YciO/YrdC/YwlC family protein [Parasutterella excrementihominis YIT 11859] Length = 207 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/186 (24%), Positives = 84/186 (45%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + L G A+ T+T + L + A+ ++ I++ +S + Sbjct: 17 IEQAAKLLTKGQLAAVSTDTGFSLVCRLDDKEALDKIRLIRQLSEKKHFTLFCDSLSQMS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCGFT-KKLIE 129 K A V+ +AK PGP T +L+ +T ++ LS + KT RVP L+E Sbjct: 77 KLARVNNTGYRMAKSVTPGPYTFILE--ATKEVPRRLSHPSKKTIGLRVPSNKALHALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL + G+ + + I ++ I+D G S IG ++T+V++ ++ Sbjct: 135 KIGEPLVGTTVIMPGEEEPLSSAWEIQDRIGDQLAFILDDGTSVIG-DTTVVDLSGDEP- 192 Query: 190 RILRPG 195 ++R G Sbjct: 193 EVIREG 198 >gi|262089750|gb|ACY24844.1| Sua5/YciO/YrdC/YwlC family protein [uncultured organism] Length = 173 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 72/177 (40%), Gaps = 23/177 (12%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHL- 83 +A PTE V+GL + + A+ RL ++K+RP LI +DIS+ +P HL Sbjct: 7 VAYPTEAVWGLGCNPFSEDAVMRLLDMKQRPVNKGLILLAADISL------FEPFIYHLN 60 Query: 84 ------AKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRV---PCGFTKKLIETYGH 133 K WPGP+T L+ + P T + RV P L +G Sbjct: 61 DIQRQRIKKTWPGPVTW---LIPNNGLAPKWITGDYTGVALRVTDHPV--AAGLSRAFGA 115 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 P+ S N G+ + + E+ I G + K S I ++ + VR Sbjct: 116 PIVSTSCNLQGRAPARSGFDV-HRYFGDELDAITSGAVGKRANPSEIRDLMTGEVVR 171 >gi|18977588|ref|NP_578945.1| hypothetical protein PF1216 [Pyrococcus furiosus DSM 3638] gi|18893305|gb|AAL81340.1| hypothetical protein PF1216 [Pyrococcus furiosus DSM 3638] Length = 49 Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 20/47 (42%), Positives = 32/47 (68%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +A PTET+YGL D+ N A++R++E K RP N LI +++ S ++ Sbjct: 1 MAFPTETIYGLGDDALNGEAVKRIFEAKGRPTDNLLIVYMAKFSQLR 47 >gi|299771354|ref|YP_003733380.1| yrdC domain protein [Acinetobacter sp. DR1] gi|298701442|gb|ADI92007.1| yrdC domain protein [Acinetobacter sp. DR1] Length = 205 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/188 (24%), Positives = 80/188 (42%), Gaps = 10/188 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E + AG + PT+ Y + N A+ R+ +I+ + D+S + Sbjct: 16 ISQAVERIRAGDVVVYPTDAAYAIGCQIGNKNAMERIAQIRGLGPKHQYAIMCCDLSDIA 75 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127 +A VD + L K P T +L S +HP KT R+P + L Sbjct: 76 TYAKVDNATYRLLKANTPAITTFILPATSEVPRRLMHP----KKKTIGLRIPSNPICQAL 131 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ G PL + GQ + + + + + K I + IDGG + ++IV++ E Sbjct: 132 LQELGEPLLTSTLILPGQEDPLDDPYDIENQLDKRIDVFIDGGFGTL-TSTSIVDLSGEH 190 Query: 188 KVRILRPG 195 I+R G Sbjct: 191 P-EIIRRG 197 >gi|221068835|ref|ZP_03544940.1| Sua5/YciO/YrdC/YwlC family protein [Comamonas testosteroni KF-1] gi|220713858|gb|EED69226.1| Sua5/YciO/YrdC/YwlC family protein [Comamonas testosteroni KF-1] Length = 214 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 1/109 (0%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E L G +A+PT++ Y L + A+ R+ I++ + L D+S + Sbjct: 17 IKQAAEMLRKGAILAVPTDSSYALVCHLDDKNAVDRMRRIRQINDKHHLTLLCRDLSELA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 +A VD L KL PGP T +L+ S LS + KT RVP Sbjct: 77 NYARVDNRQYRLLKLATPGPYTFILE-ASKEVPKRLSHPSRKTIGLRVP 124 >gi|300868277|ref|ZP_07112906.1| translation factor SUA5 [Oscillatoria sp. PCC 6506] gi|300333712|emb|CBN58090.1| translation factor SUA5 [Oscillatoria sp. PCC 6506] Length = 222 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 55/195 (28%), Positives = 86/195 (44%), Gaps = 19/195 (9%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L AG + PT+TVY + D +A+ R+ +IK PL +S + ++A V Sbjct: 24 LQAGAIMLYPTDTVYAIGCDLNVKSAVERVRQIKHLSNDKPLTFLCPSLSNIAQYAVVSD 83 Query: 79 LSLHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVP-CGFTKKLIETYGHPL 135 + K PGP T LL T + P + KT RVP F L+E G+P+ Sbjct: 84 SGYRMIKRLIPGPYTF---LLPATKLVPRLVMEPKRKTTGIRVPDQKFCLALLEALGNPI 140 Query: 136 AIPSA----NRSGQISITNV-------KHILSSSICKEIPLIIDGGISKIGLE-STIVNV 183 SA + G+ + K L S+ K + +I+D S+ G + STI+++ Sbjct: 141 ISTSAHITNDDEGKAPAAALATEENFGKAELFDSLEKLVDIIVD-DTSETGYQVSTILDL 199 Query: 184 QCEKKVRILRPGGLE 198 +K + R G E Sbjct: 200 TQDKPSIVRRGLGWE 214 >gi|124023897|ref|YP_001018204.1| translation factor (SUA5) [Prochlorococcus marinus str. MIT 9303] gi|123964183|gb|ABM78939.1| Putative translation factor (SUA5) [Prochlorococcus marinus str. MIT 9303] Length = 196 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 61/201 (30%), Positives = 91/201 (45%), Gaps = 17/201 (8%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 ++ D++AL L AG +PT+T L + P +L+ +K+R A PLI Sbjct: 7 AVLDASAL---ASRLHAGSAALLPTDT---LPALAAAPVHAAQLWTMKQRSADKPLILMA 60 Query: 65 SDISMVKKHASVDPLSLH----LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 + + H V PL+L +A+ +WPG LTLV+ S + L+ T RVP Sbjct: 61 ATPEELLAH--VSPLALEDAWSMARRYWPGALTLVVP-ASGVLVEALNPGAF-TLGLRVP 116 Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 CG + L++ G PLA SAN SG + T + L + GL ST Sbjct: 117 DCGVIRCLLKQSG-PLATTSANLSGA-APTFSADAAHTCFPGLPLLGPLPWPTPSGLAST 174 Query: 180 IVNVQCEKKVRILRPGGLEIE 200 +V Q + LR G + +E Sbjct: 175 VVAWQGSGRWHELRRGAVVLE 195 >gi|104779340|ref|YP_605838.1| hypothetical protein PSEEN0027 [Pseudomonas entomophila L48] gi|122401163|sp|Q1I2G9|RIMN_PSEE4 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|95108327|emb|CAK13021.1| conserved hypothetical protein; Sua5/YciO/YrdC/YwlC family protein [Pseudomonas entomophila L48] Length = 185 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 59/150 (39%), Gaps = 23/150 (15%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + S +++A + AG IA PTE V+GL D N A+ RL +K RP LI Sbjct: 1 MVSSWRVQQAAREVKAGAVIAYPTEAVWGLGCDPWNEDAVYRLLALKSRPVDKGLILIAD 60 Query: 66 DISMVK------KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFR 118 +I +D +S WPGP T L+ D+ P T T R Sbjct: 61 NIRQFDFLFEDFPQDWIDRMSAT-----WPGPNTW---LVPHQDLLPEWVTGQHDTVALR 112 Query: 119 VP--------CGFTKKLIETYGHPLAIPSA 140 V C LI T +P P+A Sbjct: 113 VSDHPQVRELCALVGPLISTSCNPAGRPAA 142 >gi|71065086|ref|YP_263813.1| translation factor SUA5 [Psychrobacter arcticus 273-4] gi|71038071|gb|AAZ18379.1| translation factor SUA5 [Psychrobacter arcticus 273-4] Length = 207 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 48/208 (23%), Positives = 89/208 (42%), Gaps = 10/208 (4%) Query: 1 MQIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56 MQ+ I N + + L I PT+T Y A+ +L I++ Sbjct: 1 MQVFYIHPENPQPRLIEQVANLLRKDQLIIYPTDTSYAFGCRLGAKDALEKLKHIRELDD 60 Query: 57 MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTA 115 + D+S + +A+VD + K P P+T +L+ +T D+ L+ A KT Sbjct: 61 KHQFTLLCRDLSEIANYAAVDNVQFKQLKAHTPAPITFILN--ATKDVPKKLAHAKKKTI 118 Query: 116 CFRVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174 RVP + L+E P+ S + +I + + + +I +I+ GI Sbjct: 119 GIRVPSNAIAQALLEAMDEPILTSSLILPNRDNILDDPFEIEELLGNQIDGLINAGIKTT 178 Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETL 202 L +TIV++ + ++R G ++++L Sbjct: 179 KL-TTIVDMTSSQP-EVIRQGAADVDSL 204 >gi|85059382|ref|YP_455084.1| hypothetical protein SG1404 [Sodalis glossinidius str. 'morsitans'] gi|84779902|dbj|BAE74679.1| conserved hypothetical protein [Sodalis glossinidius str. 'morsitans'] Length = 206 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 45/184 (24%), Positives = 78/184 (42%), Gaps = 6/184 (3%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 +A + L G I PT++ Y L + TA+ R+ I++ + D+S + + Sbjct: 19 QAVDLLRKGAVIVYPTDSGYALGCQLEDKTAMERICRIRQLDGHHNFTLVCRDLSELSTY 78 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIETY 131 A VD + L K PG T +L +T ++ L + KT RVP L+E Sbjct: 79 AQVDNQAFRLMKNNTPGKYTFILK--ATKEVPRRLMSDKRKTIGLRVPSNPIALALLEVL 136 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 P+ + G + + + K++ L+I GG +G + T V + R+ Sbjct: 137 DKPMMSTTLMLPGNDFAESDPESICDHLGKQVDLVIHGGF--LGQQPTTVIDLTDPTPRV 194 Query: 192 LRPG 195 +R G Sbjct: 195 VRQG 198 >gi|86132278|ref|ZP_01050873.1| YrdC protein [Dokdonia donghaensis MED134] gi|85817197|gb|EAQ38380.1| YrdC protein [Dokdonia donghaensis MED134] Length = 205 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 46/190 (24%), Positives = 85/190 (44%), Gaps = 13/190 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK---RPAMNPLICHVSDIS 68 L++ + L AG I P++TVY L D N A+ ++ +IK A +C D+S Sbjct: 17 LKQIVKILKAGGLIIYPSDTVYALGCDITNAKALEKVAQIKGVKLAKANFSFVCE--DLS 74 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + + +D + + K PGP T + L + P S K RVP T+ Sbjct: 75 NLSDYVRQIDTKTFKILKRALPGPYTFI---LPGNNNLPSSFKKKKEVGIRVPDNEITRA 131 Query: 127 LIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 ++ G+P+ S + I T ++ + +I+DGG + ST++++ Sbjct: 132 IVRALGNPIVSTSIYDEDEVIEYTTDPELIFEKWQNRVDVIVDGGYGG-NIPSTVIDLTG 190 Query: 186 EKKVRILRPG 195 ++ + ++R G Sbjct: 191 DEPI-LIREG 199 >gi|332140784|ref|YP_004426522.1| Sua5/YciO/YrdC/YwlC family protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327550806|gb|AEA97524.1| Sua5/YciO/YrdC/YwlC family protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 206 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 48/186 (25%), Positives = 78/186 (41%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +ACE + G + PT++ Y + + A+ +L I++ + D+S + Sbjct: 17 ISQACELIRDGAVVVYPTDSGYAIGCQMEDKKALEQLCRIRQIDKDHNFTLMCRDMSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKKLIE 129 +A VD + K PG T VL +T ++ L KT RVP L+E Sbjct: 77 IYAKVDNTAFRQIKNNTPGHYTFVLK--ATREVPKRLQNPKRKTIGIRVPDNAIALALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL S G + ++ ++ K++ LII GG IG T V + Sbjct: 135 ELGEPLMSTSLILPGNTMAESDPDVIRDNLEKQVGLIIHGGY--IGEHPTTVIDLSDDTP 192 Query: 190 RILRPG 195 I+R G Sbjct: 193 VIMRHG 198 >gi|190576014|ref|YP_001973859.1| hypothetical protein Smlt4185 [Stenotrophomonas maltophilia K279a] gi|212288232|sp|B2FIS1|RIMN_STRMK RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|190013936|emb|CAQ47576.1| conserved hypothetical protein [Stenotrophomonas maltophilia K279a] Length = 186 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 6/138 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L A L AG IA PTE V+GL D + A+ + +K+RP +I +D++ ++ Sbjct: 6 LDSAVATLRAGGVIAYPTEAVWGLGCDPSHEAAVHMVLRLKQRPIEKGMILVAADLAQLE 65 Query: 72 KHASVD--PLSLHLAKLF-WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + P + A L WPG T +L + P T R+ +L Sbjct: 66 GWVRLQALPDARQRAVLASWPGANTWILP--AGPRAQPWVTGEHSGIAVRISAHPLVAEL 123 Query: 128 IETYGHPLAIPSANRSGQ 145 +G PL SAN +G+ Sbjct: 124 CRAWGGPLVSTSANLAGE 141 >gi|254421677|ref|ZP_05035395.1| hypothetical protein S7335_1827 [Synechococcus sp. PCC 7335] gi|196189166|gb|EDX84130.1| hypothetical protein S7335_1827 [Synechococcus sp. PCC 7335] Length = 241 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 51/188 (27%), Positives = 85/188 (45%), Gaps = 22/188 (11%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL--- 81 ++ PT+TV LA P+ ++ K+RP PLI + + + + S ++ Sbjct: 63 VSFPTDTVPALAA---APSQADLIFAAKQRPPEKPLILMGASLGDLLPYVSGQDSAMAAW 119 Query: 82 -HLAKLFWPGPLTLVLDL--LSTTDIHPLST-ANLKTACFRVPCGFTKKLIETYGHPLAI 137 +A+ +WPG LTLVL L+ +++P T T RVP + + PLA Sbjct: 120 QSIAEQYWPGQLTLVLPASDLAPKNLNPHPTDQTAGTLGIRVPDHPVALALLSQTGPLAT 179 Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI------GLESTIVNVQCEKKVRI 191 SAN SGQ ++T + S+I + P + G G+ ST+ +I Sbjct: 180 TSANLSGQPALTEI-----SAIAQMFPSALTLGPEDYQSKAASGMPSTVAK-WTSHGWQI 233 Query: 192 LRPGGLEI 199 LR G +++ Sbjct: 234 LRQGKIQL 241 >gi|293609079|ref|ZP_06691382.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292829652|gb|EFF88014.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 205 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 46/186 (24%), Positives = 79/186 (42%), Gaps = 10/186 (5%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 +A E + AG + PT+ Y + N A+ R+ +I+ + D+S + + Sbjct: 18 QAVERIRAGDVVVYPTDAAYAIGCQIGNKNAMERIAQIRGLGPKHQYAIMCCDLSDIATY 77 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKLIE 129 A VD + L K P T +L S +HP KT R+P + L++ Sbjct: 78 AKVDNATYRLLKANTPAITTFILPATSEVPRRLMHP----KKKTIGLRIPSNPICQALLQ 133 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL + GQ + + + + + K I + IDGG + ++IV++ E Sbjct: 134 ELGEPLLTSTLILPGQEDPLDDPYDIENQLDKRIDVFIDGGFGTL-TSTSIVDLSGEHP- 191 Query: 190 RILRPG 195 I+R G Sbjct: 192 EIIRRG 197 >gi|169634119|ref|YP_001707855.1| hypothetical protein ABSDF2646 [Acinetobacter baumannii SDF] gi|169152911|emb|CAP01952.1| conserved hypothetical protein [Acinetobacter baumannii] Length = 205 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 46/188 (24%), Positives = 80/188 (42%), Gaps = 10/188 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E + AG + PT+ Y + N A+ R+ +I+ + D+S + Sbjct: 16 IEQAVERIRAGDVVVYPTDAAYAIGCQIGNKNAMERIAQIRGLGPKHQYAIMCCDLSDIA 75 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127 +A VD + L K P T +L S +HP KT R+P + L Sbjct: 76 TYAKVDNATYRLLKANTPAITTFILPATSEVPRRLMHP----KKKTIGLRIPSNPICQAL 131 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ G PL + GQ + + + + + K I + IDGG + ++IV++ E Sbjct: 132 LKELGGPLLTSTLILPGQEDPLDDPYDIENQLAKRIDVFIDGGFGTL-TTTSIVDLSGEH 190 Query: 188 KVRILRPG 195 I+R G Sbjct: 191 P-EIIRHG 197 >gi|300777696|ref|ZP_07087554.1| Sua5/YciO/YrdC/YwlC family protein [Chryseobacterium gleum ATCC 35910] gi|300503206|gb|EFK34346.1| Sua5/YciO/YrdC/YwlC family protein [Chryseobacterium gleum ATCC 35910] Length = 203 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 51/196 (26%), Positives = 87/196 (44%), Gaps = 19/196 (9%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK---RPAMNPLIC--- 62 N + + + L+ G I P++TVY L + + A+ +L ++KK + +IC Sbjct: 14 ENLVNEVIKTLNNGGLIIYPSDTVYALGCNIFDIKAMEKLAQLKKMKLEKSKFSIICNDL 73 Query: 63 -HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 H+SD + +D K PGP T +L+ + PL+ KT RVP Sbjct: 74 SHLSDFT-----RPIDTSVFRFLKSHLPGPFTFILEANKSL---PLAYKGHKTIGIRVPD 125 Query: 122 GFTKKLI-ETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 +LI E GHP+A S + I + +++ + ++ID G + ST Sbjct: 126 HPIPQLIVEKLGHPIASTSIKDDDEIIEYSTDPELIAEKYDHLVDIVIDSGYGD-NVAST 184 Query: 180 IVNVQCEKKVRILRPG 195 IV++ + I+R G Sbjct: 185 IVDLTSGEP-EIIRQG 199 >gi|326335637|ref|ZP_08201824.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692403|gb|EGD34355.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 207 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 50/197 (25%), Positives = 89/197 (45%), Gaps = 13/197 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYE---IKKRPAMNPLICHVSDIS 68 ++K + L G I PT+TVYGL D + A+ R+ + IK A +C +D+S Sbjct: 17 VQKVVDCLREGGVIIYPTDTVYGLGCDITHSKALERIAQLKGIKLEKANFSFVC--ADLS 74 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126 + + +D + + K PG T +L T++ P KT RVP + Sbjct: 75 NLSDYVKQIDTATFKILKRALPGAYTFILP--GNTNL-PKEFKKKKTVGIRVPDNNIARI 131 Query: 127 LIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 L++ G+P+ S + I T ++ ++ ++IDGG + ST++++ Sbjct: 132 LVKKLGNPIVSSSIYDEDEVIEYTTDPELIFEKWQDKVDMVIDGGYGD-NVASTVIDLST 190 Query: 186 EKKVRILRPGGLEIETL 202 + ++R G IE L Sbjct: 191 -RVPELIREGKGSIEGL 206 >gi|118462898|ref|YP_880757.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium avium 104] gi|254774340|ref|ZP_05215856.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium avium subsp. avium ATCC 25291] gi|118164185|gb|ABK65082.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium avium 104] Length = 219 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 50/189 (26%), Positives = 84/189 (44%), Gaps = 7/189 (3%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-L 83 + +PT+TVYG+ D+ N A+ L K R P+ V ++ P L Sbjct: 30 VVMPTDTVYGIGADAFNSAAVSALLSAKGRGRDMPVGVLVGSWHTIEGLVYTMPDGARDL 89 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142 + FWPG L+LV+ + L A T R+P +L+ G P+A+ SAN Sbjct: 90 IRAFWPGALSLVVTQAPSLQWD-LGDAR-GTVMLRMPLHPVAIELLREVG-PMAVSSANI 146 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202 SG + + + + + + G ++ G STIV++ RILRPG + + + Sbjct: 147 SGHPAAVDADEA-RGQLGDLVDVYLAAGRAERGAASTIVDLTGATP-RILRPGPVSAQRI 204 Query: 203 KRAISVELE 211 + ++ E Sbjct: 205 AEVLGIDPE 213 >gi|254412598|ref|ZP_05026371.1| Sua5/YciO/YrdC/YwlC family protein [Microcoleus chthonoplastes PCC 7420] gi|196180333|gb|EDX75324.1| Sua5/YciO/YrdC/YwlC family protein [Microcoleus chthonoplastes PCC 7420] Length = 221 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 50/192 (26%), Positives = 93/192 (48%), Gaps = 13/192 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + K + L G + PT+TVY + D +A+ R+ +K+ PL S +S + Sbjct: 17 IEKIRDNLQDGAVMLYPTDTVYAIGCDLNVKSAVERVRRLKQLSNEKPLTFLCSSLSNIS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVPCG-FTKKLI 128 ++A V + + K PGP T LL T + P + + KT+ RVP + ++ Sbjct: 77 EYAWVSDPAYRIMKRLIPGPYTF---LLPATKLVPRLVMSPKRKTSGIRVPDHPVCQAIL 133 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKE----IPLIIDGGISKIGLE-STIVNV 183 E G+P+ SA+ ++ + ++ + + + +I+D G SK G++ STI+++ Sbjct: 134 EALGNPVISTSAHLPDEMGNFPTVGLETARLFDQFEGLVDIIVDDG-SKPGVQVSTILDM 192 Query: 184 QCEKKVRILRPG 195 ++ ILR G Sbjct: 193 TGDEPT-ILRKG 203 >gi|163755495|ref|ZP_02162614.1| translation factor [Kordia algicida OT-1] gi|161324408|gb|EDP95738.1| translation factor [Kordia algicida OT-1] Length = 207 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 48/197 (24%), Positives = 86/197 (43%), Gaps = 13/197 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK---RPAMNPLICHVSDIS 68 ++K + L G + PT+TVYGL D N A+ R+ IK A IC+ D+S Sbjct: 17 IKKVVDILRDGGLVIYPTDTVYGLGCDITNTKALERIARIKGIKLEKANFSFICN--DLS 74 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126 + + +D + + K PGP T + L + P KT RVP + Sbjct: 75 HISDYIRQIDTPTYKILKKALPGPYTFI---LPGNNNLPKVFKKKKTVGIRVPDNNIART 131 Query: 127 LIETYGHPLAIPS-ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +++ G+P+ S + I T ++ + ++DGG + STI+++ Sbjct: 132 IVQELGNPIVSTSIYDEDDIIEYTTDPELILEKWENLVDAVVDGGYGD-NVASTIIDLSG 190 Query: 186 EKKVRILRPGGLEIETL 202 + ++R G +I+ + Sbjct: 191 YEP-EVIREGKGDIDII 206 >gi|47222934|emb|CAF99090.1| unnamed protein product [Tetraodon nigroviridis] Length = 472 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 37/147 (25%), Positives = 70/147 (47%), Gaps = 8/147 (5%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++++++ E + +G +PT+TVY L P A+ + Y +KK+ P+ +S I Sbjct: 308 ASSVQQIAEIMKSGGICGMPTDTVYVLVAACNRPEAVVKAYNVKKQAQDRPMSMWISSIQ 367 Query: 69 MVK--KHASVDPLSLHLAKLFWPGPLTL--VLDLLSTTDIHPLSTANLKTACFRVP-CGF 123 ++ +H + PL L + WP +++ +D+ D ++ R P C Sbjct: 368 QLEPVRHL-LSPLLLDFMEAAWPSSISMGPWMDIFGLGDASR-HIGTPQSIAIRNPDCSV 425 Query: 124 TKKLIETYGHPLAIPSANRSGQISITN 150 LI G P+A+ SAN +G+ T+ Sbjct: 426 ATYLISKVG-PIAVTSANPTGEADTTH 451 >gi|270262116|ref|ZP_06190388.1| hypothetical protein SOD_b03230 [Serratia odorifera 4Rx13] gi|270043992|gb|EFA17084.1| hypothetical protein SOD_b03230 [Serratia odorifera 4Rx13] Length = 206 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 46/194 (23%), Positives = 80/194 (41%), Gaps = 6/194 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + L G I PT++ Y L +A+ R+ I++ + D+S + Sbjct: 17 INQAVDVLRKGGVIVYPTDSGYALGCKLEEKSAMERICRIRQLDGNHNFTLMCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD + L K PG T +L +T ++ L KT RVP L+E Sbjct: 77 TYAYVDNTAFRLIKNNTPGNYTFILK--ATKEVPRRLMNDKRKTIGLRVPSNPIALALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+ + G + +S + K++ L+I GG +G + T V E Sbjct: 135 VLNEPMMSTTLMLPGNDFAESDPEEISDHLGKQVDLVIHGGF--LGQQPTTVIDLTESAP 192 Query: 190 RILRPGGLEIETLK 203 ++R G +I + Sbjct: 193 EVVREGAGDITPFR 206 >gi|33863926|ref|NP_895486.1| hypothetical protein PMT1659 [Prochlorococcus marinus str. MIT 9313] gi|33635510|emb|CAE21834.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT 9313] Length = 196 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 62/201 (30%), Positives = 91/201 (45%), Gaps = 17/201 (8%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 ++ D++AL L AG +PT+T L + P +L+ IK+R A PLI Sbjct: 7 AVLDASAL---ASRLHAGSAALLPTDT---LPALAAAPVHAAQLWTIKQRSADKPLILMG 60 Query: 65 SDISMVKKHASVDPLSLH----LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 + + H V PL+L +A+ +WPG LTLV+ S + L+ T RVP Sbjct: 61 ATPEELLAH--VLPLALEDVWSMARRYWPGALTLVVP-ASGVLVEALNPGAF-TLGLRVP 116 Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 CG + L++ G PLA SAN SG + T + L + GL ST Sbjct: 117 DCGMLRTLLKQSG-PLATTSANLSGS-APTFSADAAHTCFPGLPLLGPLPWPTPSGLAST 174 Query: 180 IVNVQCEKKVRILRPGGLEIE 200 +V Q + LR G + +E Sbjct: 175 VVAWQGAGRWHELRRGAVVLE 195 >gi|332289472|ref|YP_004420324.1| putative ribosome maturation factor [Gallibacterium anatis UMN179] gi|330432368|gb|AEC17427.1| putative ribosome maturation factor [Gallibacterium anatis UMN179] Length = 187 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 58/132 (43%), Gaps = 8/132 (6%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L G IA PTE V+GL D N AI +L ++K+RP LI + K+ + Sbjct: 14 LKQGEVIAYPTEAVFGLGCDPFNDQAIEKLLKLKQRPQEKGLILIAPHLDFFKQIIDFNK 73 Query: 79 LS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF--TKKLIETYGH 133 LS L + + P T ++ + + PL T T R+ C + L + Sbjct: 74 LSAQDLQRLQQTYSRPTTWIVPV--QKQVSPLLTGRFDTIAVRL-CRHPAVEMLCQLAKM 130 Query: 134 PLAIPSANRSGQ 145 P+ SAN SGQ Sbjct: 131 PITSTSANFSGQ 142 >gi|120436667|ref|YP_862353.1| YrdC domain-containing protein [Gramella forsetii KT0803] gi|117578817|emb|CAL67286.1| protein containing YrdC domain [Gramella forsetii KT0803] Length = 206 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 50/215 (23%), Positives = 94/215 (43%), Gaps = 25/215 (11%) Query: 2 QIMSITDSNA----LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK---R 54 +++ I D N + K E L G I PT+T+YGL D N +A+ ++ +IK Sbjct: 3 ELLRIYDENPAPKHINKVVETLRKGGLIIYPTDTIYGLGCDITNVSALEKIAQIKNVKLE 62 Query: 55 PAMNPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK 113 A +C D+S + + +D + + K PGP T + L + P K Sbjct: 63 KANFSFVCE--DLSNLSDYVKQIDSSTFKILKRSLPGPYTFI---LPGGNSLPNVFKKKK 117 Query: 114 TACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKE-----IPLII 167 T RVP + ++ G+P+ S ++ +++ + KE + ++I Sbjct: 118 TVGIRVPDNNICRAIVNGLGNPIVSTSIRDEDEV----LEYSTDPELIKEKWDHLVDIVI 173 Query: 168 DGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202 DGG + ST++++ + ++R G I+ + Sbjct: 174 DGGFGD-NIASTVIDLTTGEP-EVIREGKGRIDIM 206 >gi|93005341|ref|YP_579778.1| Sua5/YciO/YrdC/YwlC [Psychrobacter cryohalolentis K5] gi|92393019|gb|ABE74294.1| translation factor SUA5 [Psychrobacter cryohalolentis K5] Length = 205 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 49/208 (23%), Positives = 88/208 (42%), Gaps = 10/208 (4%) Query: 1 MQIMSITDSNA----LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56 MQ+ I N + + + L I PT+T Y A+ +L +I+ Sbjct: 1 MQVFYIHPENPQPRLIEQVADLLRKDQLIIYPTDTSYAFGCRLGAKDALEKLKQIRALDD 60 Query: 57 MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTA 115 + D+S + +A+VD + K P P+T +L+ +T D+ L+ A KT Sbjct: 61 KHQFTLLCRDLSEIANYAAVDNVQFKQLKSHTPAPITFILN--ATKDVPKKLAHAKKKTI 118 Query: 116 CFRVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174 RVP + L+E P+ S + I + + + +I +I+ GI Sbjct: 119 GIRVPSNAIAQALLEAMDEPILTSSLILPNRDDILDDPFEIEELLGNQIDGLINAGIKTT 178 Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETL 202 L +TIV++ + I+R G ++ +L Sbjct: 179 KL-TTIVDMTSSQP-EIIRQGAADVSSL 204 >gi|294778304|ref|ZP_06743730.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides vulgatus PC510] gi|294447932|gb|EFG16506.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides vulgatus PC510] Length = 204 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 34/110 (30%), Positives = 50/110 (45%), Gaps = 4/110 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSDISMV 70 L + L+ G I PT+T+Y + AI R+ ++K P N L D+S + Sbjct: 15 LEEVIRVLEEGGLIIYPTDTMYAIGCHGLKERAIERICKLKNIDPRKNNLSIICYDLSNI 74 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 ++A VD + L K PGP T +L+ T + P N K RVP Sbjct: 75 SEYAKVDNSTFKLMKRNLPGPFTFILN---TGNRLPKIFKNRKEVGIRVP 121 >gi|226942190|ref|YP_002797263.1| RNA binding yrdC protein [Azotobacter vinelandii DJ] gi|226717117|gb|ACO76288.1| RNA binding yrdC protein [Azotobacter vinelandii DJ] Length = 185 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 59/148 (39%), Gaps = 29/148 (19%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +R+ + G IA PTE V+GL D N A+RRL +K+RP LI +DI Sbjct: 7 VRQVARAVRRGGVIAYPTEAVWGLGCDPWNADAVRRLLALKRRPQDKGLILVAADIGQFG 66 Query: 72 KHASVDPLSL--HLAKLFWPGPLTLVLD----------------LLSTTDIHPLSTANLK 113 P + LA WPGP T ++ L +D HPL Sbjct: 67 FLLDDLPSAWRERLAGT-WPGPNTWLVPHRGRLPAWITGRHASVALRVSD-HPL------ 118 Query: 114 TACFRVPCGFTKKLIETYGHPLAIPSAN 141 R C T L+ T +P P+A Sbjct: 119 ---VRALCRLTGPLVSTSANPAGRPAAR 143 >gi|149928539|ref|ZP_01916768.1| Sua5/YciO/YrdC/YwlC family protein [Limnobacter sp. MED105] gi|149822738|gb|EDM81996.1| Sua5/YciO/YrdC/YwlC family protein [Limnobacter sp. MED105] Length = 218 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 41/181 (22%), Positives = 79/181 (43%), Gaps = 4/181 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S ++A + +++G AIPT++ Y L + A+ RL +K L D+S Sbjct: 14 SRLCKQAADLINSGGIAAIPTDSCYALVCHLDDKNAVERLRRLKGISEKQHLALLCKDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKK 126 + +A V+ + L K +PGP T +L+ +T ++ +S + K+ RVP + Sbjct: 74 ELGSYAKVNNVQYRLLKSVFPGPYTFILE--ATKEVPKRVSHPSKKSIGLRVPAHAVVQG 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+E L + G ++ ++ LI+D G +T+++ E Sbjct: 132 LLEHIEGALIATTLQLPGMEEPARSGWEAQEAVGNDVDLIVDDGEYCGAFPTTVIDWTSE 191 Query: 187 K 187 + Sbjct: 192 E 192 >gi|67924899|ref|ZP_00518292.1| SUA5/yciO/yrdC, N-terminal [Crocosphaera watsonii WH 8501] gi|67853266|gb|EAM48632.1| SUA5/yciO/yrdC, N-terminal [Crocosphaera watsonii WH 8501] Length = 199 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 52/184 (28%), Positives = 82/184 (44%), Gaps = 16/184 (8%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP----LS 80 I+ PT+TV LA P ++ KKRP PLI S + K+ P + Sbjct: 19 ISFPTDTVPALAA---LPNYASLIFATKKRPPDKPLILMGSSPKAIWKYVQGTPEEFRIW 75 Query: 81 LHLAKLFWPGPLTLVLDL--LSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIP 138 + + +WPG LTLVL L D++PL + T R+P + I LA Sbjct: 76 QEVVQKYWPGQLTLVLPASELVPKDMNPLDNS---TIGVRIPDSVIARNILKETGCLATT 132 Query: 139 SANRSGQISITNVKHILSS---SICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 SAN SG+ ++ I+ S ++ + + +G GL ST+ + + ILR G Sbjct: 133 SANLSGEPPKEKLREIVVSFPNALVLDKEPLNNGKKYGSGLPSTVAKWTNQGWI-ILRQG 191 Query: 196 GLEI 199 +++ Sbjct: 192 SIQL 195 >gi|212710704|ref|ZP_03318832.1| hypothetical protein PROVALCAL_01771 [Providencia alcalifaciens DSM 30120] gi|212686401|gb|EEB45929.1| hypothetical protein PROVALCAL_01771 [Providencia alcalifaciens DSM 30120] Length = 206 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 73/172 (42%), Gaps = 6/172 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + ++ E L+ G + PT++ Y + A+ R+ I+K + + D+S + Sbjct: 17 ISQSVEILNKGGVVVYPTDSGYAIGCRLEEKNALERICRIRKLDSNHNFTLMCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD L K PG T +L +T ++ L KT RVP + L+E Sbjct: 77 NYAHVDNTVFRLIKNNTPGNYTFILK--ATKEVPRRLMNEKRKTIGLRVPSNPIARDLLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 G PL S G + + + K++ L+I GG IG + T V Sbjct: 135 AVGEPLMSTSLILPGDDFTQSDPEEIRDLLDKQVDLVIHGGY--IGQKPTTV 184 >gi|77457715|ref|YP_347220.1| translation factor SUA5 [Pseudomonas fluorescens Pf0-1] gi|77381718|gb|ABA73231.1| conserved hypothetical protein [Pseudomonas fluorescens Pf0-1] Length = 209 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 40/176 (22%), Positives = 76/176 (43%), Gaps = 9/176 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E + G + PT++ Y + + AI R+ +++ + SD+S + Sbjct: 17 IKQAVEIIRKGGVVVYPTDSSYAIGCQIGDKNAIERVRRLRQLDEKHNFALICSDLSQLG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127 +A +D + + K PGP T +L+ +HP +T RVP L Sbjct: 77 NYAKIDTATFRILKAHLPGPYTFILNATREVPRLLLHP----KKRTIGLRVPSHPIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + G PL + G + + + + ++ LIIDGG I ST++++ Sbjct: 133 LAELGEPLMSVTLIMPGDEDPLSDPYEMRQVLEHQVDLIIDGGSGGIK-ASTVIDL 187 >gi|260913990|ref|ZP_05920464.1| Sua5/YciO/YrdC/YwlC family protein [Pasteurella dagmatis ATCC 43325] gi|260632077|gb|EEX50254.1| Sua5/YciO/YrdC/YwlC family protein [Pasteurella dagmatis ATCC 43325] Length = 207 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 84/187 (44%), Gaps = 7/187 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E L G I PT++ Y L + A+ R+ +I++ P + SD+S + Sbjct: 17 INQAVEILRRGGVIIYPTDSGYALGCMIGDKHAMDRIVQIRQLPEGHNFTLVCSDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 ++ V+ + L K PG T + L +T ++ L T+ KT RVP L++ Sbjct: 77 TYSLVNNTAYRLIKNNTPGRYTFI--LAATKELPRRLMTSKRKTIGIRVPDNQIALDLLK 134 Query: 130 TYGHPLAIPSANRSGQISITNVK-HILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 G P+ S G+ IT + + +++ LII GG +G E T V E Sbjct: 135 ALGEPILSCSLMLPGEEYITQSDPEEIRDRLERQVDLIIHGGY--LGQEPTTVVDLTEDT 192 Query: 189 VRILRPG 195 ILR G Sbjct: 193 PVILREG 199 >gi|145298417|ref|YP_001141258.1| hypothetical protein ASA_1410 [Aeromonas salmonicida subsp. salmonicida A449] gi|142851189|gb|ABO89510.1| conserved hypothetical protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 206 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 45/186 (24%), Positives = 80/186 (43%), Gaps = 7/186 (3%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 +A + + G IA PT++ Y L + A+ R+ I++ + D+S + + Sbjct: 19 QAVQIIQNGGVIAYPTDSGYALGCQMGDKGALERICRIRRIDPTHDFTLVCRDLSEISTY 78 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIETY 131 A VD + L K PGP T + +T ++ L KT RVP L+E Sbjct: 79 AKVDNTAFRLVKGNTPGPYTFIFK--ATKEVPRRLMNEKKKTIGIRVPANNIALALLEAL 136 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKKVR 190 G PL + G + + K++ L+++GG +G + +T+V+ ++ V Sbjct: 137 GEPLLSTTLILPGSEMAEFDPEEIFDKLGKQLDLVVNGGY--LGEQPTTVVDFSDDETVL 194 Query: 191 ILRPGG 196 R G Sbjct: 195 RRRGAG 200 >gi|262280082|ref|ZP_06057867.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter calcoaceticus RUH2202] gi|262260433|gb|EEY79166.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter calcoaceticus RUH2202] Length = 205 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 46/188 (24%), Positives = 80/188 (42%), Gaps = 10/188 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E + AG + PT+ Y + N A+ R+ +I+ + D+S + Sbjct: 16 ISQAVERIRAGDVVVYPTDAAYAIGCQIGNKNAMERIAQIRGLGPKHQYAIMCCDLSDIA 75 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127 +A VD + L K P T +L S +HP KT R+P + L Sbjct: 76 TYAKVDNATYRLLKANTPAITTFILPATSEVPRRLMHP----KKKTIGLRIPSNPICQAL 131 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ G PL + GQ + + + + + K I + IDGG + ++IV++ E Sbjct: 132 LKELGEPLLTSTLILPGQEDPLDDPYDIENQLDKRIDVFIDGGFGTL-TSTSIVDLSGEH 190 Query: 188 KVRILRPG 195 I+R G Sbjct: 191 P-EIIRRG 197 >gi|168035903|ref|XP_001770448.1| predicted protein [Physcomitrella patens subsp. patens] gi|162678325|gb|EDQ64785.1| predicted protein [Physcomitrella patens subsp. patens] Length = 291 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 55/218 (25%), Positives = 88/218 (40%), Gaps = 24/218 (11%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 S +D L E + +G IPT+TVY + D +N AI RLY IK M PL Sbjct: 52 SGSDVWRLDPLVELIKSGAVGIIPTDTVYAIVCDLKNRQAIDRLYRIKNMDPMKPLSILC 111 Query: 65 SDISMVKKHASVDPLS--------LHLAKLFWPGPLTLVL--------DLLSTTDIHPLS 108 + K+ P A+ PGP T +L + +S Sbjct: 112 RSFQDIDKYTLGFPRGNSHGQTNVFRAARQSLPGPYTFILPASKEMPKQCTTFGGSSAVS 171 Query: 109 TANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQ----ISITNVKHILSSSICKE- 162 A K+ R+P +L++ PL S + + + + +S +E Sbjct: 172 CAPRKSVGVRMPDDVICAELLKRLDEPLLCTSVRQRSEDEWMLDPVIIADTYGASEGREG 231 Query: 163 IPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200 + +IDGG ++ ST++++ EK + ILR G +E Sbjct: 232 VDFVIDGG-ERLAYPSTVIDMTGEKPI-ILRRGKGPVE 267 >gi|326773289|ref|ZP_08232572.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces viscosus C505] gi|326636519|gb|EGE37422.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces viscosus C505] Length = 205 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 84/186 (45%), Gaps = 9/186 (4%) Query: 20 DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL 79 D GL +A PT++ Y LA N + R+ I++ + +D + V A V Sbjct: 26 DGGL-VAYPTDSGYALACAPGNKEGLDRIRTIRQLDGKHNFTFVCADFAQVGPLAIVGNN 84 Query: 80 SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK--TACFRVPC-GFTKKLIETYGHPLA 136 + L K PGP T +L T D+ P T N K T R+P T+ L+ +G P+ Sbjct: 85 AFRLIKRLTPGPWTFILK--GTKDV-PRMTLNPKKHTLGVRIPDHAITQSLVAEFGAPIL 141 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 + R GQ + S+ I ++++G + + G ++++++ + +LR G Sbjct: 142 SSTFIRPGQEEPETNGWEIQDSLGHLIDVVVEGPVGQ-GEPTSVIDL-TDDVPEVLREGA 199 Query: 197 LEIETL 202 ++ L Sbjct: 200 GDVSLL 205 >gi|319897336|ref|YP_004135532.1| translation factor sua5 [Haemophilus influenzae F3031] gi|317432841|emb|CBY81206.1| conserved protein, putative translation factor SUA5 [Haemophilus influenzae F3031] Length = 207 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 53/191 (27%), Positives = 82/191 (42%), Gaps = 15/191 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E L G I PT++ Y L + A+ R+ I+K + SD+S + Sbjct: 17 INQAVEILQKGGVIVYPTDSGYALGCMMGDKHAMDRIVAIRKLSEGHNFTLVCSDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A V+ + L K PG T +L +T ++ L T+ KT RVP L+ Sbjct: 77 TYARVNNTAYRLIKNNTPGRYTFILT--ATKELPRRLMTSKRKTIGLRVPDNKIALDLLS 134 Query: 130 TYGHP-----LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 G P L +P+ + Q ++ L ++ LII GG +G E T V Sbjct: 135 ALGEPILSCSLMLPNEEHTTQSDPEEIRDRLE----HQVDLIIHGGY--LGQELTTVVDL 188 Query: 185 CEKKVRILRPG 195 E+ ILR G Sbjct: 189 TEESPVILREG 199 >gi|89902007|ref|YP_524478.1| Sua5/YciO/YrdC/YwlC [Rhodoferax ferrireducens T118] gi|89346744|gb|ABD70947.1| Sua5/YciO/YrdC/YwlC [Rhodoferax ferrireducens T118] Length = 207 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 68/160 (42%), Gaps = 2/160 (1%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++A LD G +A+PT++ Y L + A +L I+ + L D+S + Sbjct: 17 LKQAITLLDQGDILAVPTDSSYALVCHLDDKAAADKLRRIRGVDDKHHLTLLCRDLSELA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130 +A VD K PGP T +L S LS + KT RVP + L++ Sbjct: 77 NYAQVDNQQFRRIKSATPGPYTFILQ-ASKEVPRRLSHPSRKTIGLRVPEHKVLQALLDL 135 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 + PL + G++ N + K+I +ID G Sbjct: 136 HNGPLLATTLIPPGEVEPINDALEIRERYKKQIAAVIDAG 175 >gi|261749259|ref|YP_003256944.1| Sua5/YciO/YrdC/YwlC family protein [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497351|gb|ACX83801.1| Sua5/YciO/YrdC/YwlC family protein [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 192 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 11/140 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + K+ + L G + PT+TV+GL D+ N A+ ++Y+IK R +I V SM + Sbjct: 7 IEKSVKILKKGKSLLYPTDTVWGLGCDAFNIKAVEKIYKIKNRSFSKTMILLVE--SMDR 64 Query: 72 KHASVDPLSLHLAKLFWPG----PLTLVLD--LLSTTDIHPLSTANLKTACFRVPCG-FT 124 + V+ + + K+ P+T+V D + ++P + N T R+ F Sbjct: 65 LYELVEEIPFFVKKILLENHRKKPITIVYDNPRKIVSKLNPQAKDN--TLAIRLTMDPFC 122 Query: 125 KKLIETYGHPLAIPSANRSG 144 LI+ P+ SAN SG Sbjct: 123 SLLIQNLDRPIISTSANLSG 142 >gi|86607002|ref|YP_475765.1| Sua5/YciO/YrdC/YwlC family protein [Synechococcus sp. JA-3-3Ab] gi|86555544|gb|ABD00502.1| Sua5/YciO/YrdC/YwlC family protein [Synechococcus sp. JA-3-3Ab] Length = 235 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 6/139 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++++ L G + PT+TVY + D + A+ R+ +K+ PL +S Sbjct: 14 ARSIQRIAAALREGAVMLYPTDTVYAIGCDVTHKQAVERVRRLKRLSNDKPLTFLCPSLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVP-CGFTK 125 + ++A V + L + PGP T LL T + P + KT RVP + Sbjct: 74 QIAQYAQVSDPAYRLMRRLIPGPFTF---LLPATKLVPKLVMDPKRKTTGIRVPDSAICQ 130 Query: 126 KLIETYGHPLAIPSANRSG 144 L+ G+P+ SA G Sbjct: 131 ALLAELGNPIVSTSAKLGG 149 >gi|261343645|ref|ZP_05971290.1| Sua5/YciO/YrdC/YwlC family protein [Providencia rustigianii DSM 4541] gi|282568028|gb|EFB73563.1| Sua5/YciO/YrdC/YwlC family protein [Providencia rustigianii DSM 4541] Length = 206 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 43/172 (25%), Positives = 74/172 (43%), Gaps = 6/172 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + ++ + L+ G + PT++ Y + + A++R+ I++ A + D+S + Sbjct: 17 ISQSVDILNKGGVVVYPTDSGYAIGCRLEDKDALQRICRIRQLDANHNFTLMCRDLSEIS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD L K PG T +L T ++ L KT RVP + L+E Sbjct: 77 NYAHVDNTVFRLIKNNTPGNYTFILK--GTKEVPRRLMNEKKKTIGLRVPSNPIARDLLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 G PL S G + + + K++ L+I GG IG + T V Sbjct: 135 AVGEPLMSTSLILPGDDFTQSDPEEIRDLLDKQVDLVIHGGY--IGQKPTTV 184 >gi|291612767|ref|YP_003522924.1| SUA5/yciO/yrdC domain protein [Sideroxydans lithotrophicus ES-1] gi|291582879|gb|ADE10537.1| SUA5/yciO/yrdC domain protein [Sideroxydans lithotrophicus ES-1] Length = 185 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 48/175 (27%), Positives = 79/175 (45%), Gaps = 16/175 (9%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 R+ +L G IA PTE+ YGL D N A+ RL ++K+RP LI S V + Sbjct: 9 RQLAAYLKRGGLIAYPTESCYGLGCDPANRAAVLRLLKLKRRPQRKGLILIASHYRQVAR 68 Query: 73 HASVDPLS-LHLAKLFWPG--PLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + + PL+ A+L G +T ++ + S+ T + T R+ F ++L Sbjct: 69 Y--LQPLAPADQARLQHEGAQAVTYLMPVRSSAPRWLRGTHD--TLAVRLTAHPFARQLC 124 Query: 129 ETYGHPLAIPSANRSGQ---ISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 + L SANRSGQ + + + + + + ++ G + K STI Sbjct: 125 RSADSALVSTSANRSGQRPAKTYADCRRLFGNKV-----WVLRGRVGKRKQPSTI 174 >gi|282895924|ref|ZP_06303964.1| Sua5/YciO/YrdC/YwlC [Raphidiopsis brookii D9] gi|281199169|gb|EFA74038.1| Sua5/YciO/YrdC/YwlC [Raphidiopsis brookii D9] Length = 219 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 58/126 (46%), Gaps = 6/126 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L G + PT+TVY + D +A+ R+ +IK+ PL +S V +A V Sbjct: 24 LSGGAVMLYPTDTVYAIGCDLNAKSAVERVKKIKRLANDKPLTFLCPSLSRVATYAFVSD 83 Query: 79 LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTAN--LKTACFRVPC-GFTKKLIETYGHPL 135 ++ + K PGP T LL T + P N KT RVP L+E+ G+P+ Sbjct: 84 MAYRIMKSLIPGPYTF---LLPATKLVPRLVQNPKRKTTGIRVPNHHLCLALLESLGNPI 140 Query: 136 AIPSAN 141 SA+ Sbjct: 141 ISTSAH 146 >gi|148981774|ref|ZP_01816522.1| putative translation factor [Vibrionales bacterium SWAT-3] gi|145960741|gb|EDK26080.1| putative translation factor [Vibrionales bacterium SWAT-3] Length = 206 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 46/187 (24%), Positives = 79/187 (42%), Gaps = 6/187 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + G + PT++ Y L N A+ R+ +I++ + D+S + Sbjct: 17 INQAVAIVRNGGVVVYPTDSGYALGCQLENKQALERICKIRRIDDKHNFTLLCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD ++ L K PG T + +T ++ L A KT RVP L+E Sbjct: 77 LYARVDNVAFRLLKAHTPGAYTFIFK--ATKEVPKRLMNAKRKTIGIRVPDNKIALDLLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL S G + + + S+ + +I++GG +G + T V + Sbjct: 135 AMGEPLMSTSLILPGNETTESDPEEIRDSLEHAVDVILNGGY--LGEQPTTVIDFSDDDA 192 Query: 190 RILRPGG 196 ILR G Sbjct: 193 VILRRGA 199 >gi|269467898|gb|EEZ79637.1| translation factor SUA5 [uncultured SUP05 cluster bacterium] Length = 178 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 44/140 (31%), Positives = 68/140 (48%), Gaps = 5/140 (3%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 R A E+L AG I+ PT+T+ GL+ R ++ RL +IK+R A LI SD+ ++ Sbjct: 6 RLASEYLKAGGVISHPTDTIQGLSCLPRFEHSMHRLLKIKQRSAAKGLILLASDVRYLED 65 Query: 73 HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETY 131 + V +S L + G T L L +++ I L T T R+ +L + Sbjct: 66 Y--VADVS-QLKSIKNTGAPTTYL-LKASSKISKLLTGEFSTVAIRLTDNALIAELCKAT 121 Query: 132 GHPLAIPSANRSGQISITNV 151 L SAN +G+ S T+V Sbjct: 122 NSALVSSSANTTGKHSATSV 141 >gi|188995759|ref|YP_001930011.1| hypothetical protein PGN_1895 [Porphyromonas gingivalis ATCC 33277] gi|188595439|dbj|BAG34414.1| conserved hypothetical protein [Porphyromonas gingivalis ATCC 33277] Length = 191 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 42/164 (25%), Positives = 70/164 (42%), Gaps = 23/164 (14%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 +KA E + G I PT+T++G+ D+ N A+RR+Y +K+R ++ ++ Sbjct: 11 KKAAEVMRKGGIILYPTDTIWGIGCDATNEEAVRRIYRLKERADSKSMLV------LIDS 64 Query: 73 HASVDPLSLHLAKLFWP------GPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125 A + L + +L W PLT++ + P A+ + R+ F+ Sbjct: 65 EAKLQGLMDEVPELAWDLIELTTKPLTIIYP--QAKGVVPALIASDGSLGIRLTRETFSA 122 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169 +L P+ SAN SGQ S I P I+DG Sbjct: 123 ELCRLMRVPIVSTSANISGQPSARTFGEIA--------PAILDG 158 >gi|41408558|ref|NP_961394.1| hypothetical protein MAP2460c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41396916|gb|AAS04777.1| hypothetical protein MAP_2460c [Mycobacterium avium subsp. paratuberculosis K-10] Length = 219 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 50/189 (26%), Positives = 84/189 (44%), Gaps = 7/189 (3%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-L 83 + +PT+TVYG+ D+ N A+ L K R P+ V ++ P L Sbjct: 30 VVMPTDTVYGIGADAFNSAAVSALLSAKGRGRDMPVGVLVGSWHTIEGLVYTMPDGARDL 89 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142 + FWPG L+LV+ + L A T R+P +L+ G P+A+ SAN Sbjct: 90 IRAFWPGALSLVVPQAPSLQWD-LGDAR-GTVMLRMPLHPVAIELLREVG-PMAVSSANI 146 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202 SG + + + + + + G ++ G STIV++ RILRPG + + + Sbjct: 147 SGHPAAVDADEA-RGQLGDLVDVYLAAGRAERGAASTIVDLTGATP-RILRPGPVSAQRI 204 Query: 203 KRAISVELE 211 + ++ E Sbjct: 205 AAVLGIDPE 213 >gi|301156160|emb|CBW15631.1| conserved protein [Haemophilus parainfluenzae T3T1] Length = 207 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 53/191 (27%), Positives = 82/191 (42%), Gaps = 15/191 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E L G I PT++ Y L + A+ R+ I+K P + SD+S + Sbjct: 17 INQAVEILRQGGVIVYPTDSGYALGCMIGDKHAMDRIVAIRKLPEGHNFTLVCSDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A+V + L K PG T +L +T ++ L T+ KT RVP L++ Sbjct: 77 TYATVSNSAYRLIKNNTPGRYTFILT--ATKELPRRLMTSKRKTIGLRVPDNQIALDLLK 134 Query: 130 TYGHP-----LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 G P L +P ++ L +++ LII GG +G E T V Sbjct: 135 ALGEPILSCSLMLPDNEHMTYSDPEEIRECLE----RQVDLIIHGGY--LGQEPTTVVDL 188 Query: 185 CEKKVRILRPG 195 E+ ILR G Sbjct: 189 TEESPVILREG 199 >gi|326673468|ref|XP_003199892.1| PREDICTED: hypothetical protein LOC335392 [Danio rerio] Length = 876 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 45/198 (22%), Positives = 87/198 (43%), Gaps = 15/198 (7%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S ++ + E + G +PT+TVY L P A+ + Y +KK+ P+ V+ I Sbjct: 607 STSVHQIAEIMKNGGICGMPTDTVYVLVAACNRPQAVEKAYSVKKQAKERPMSLWVASIK 666 Query: 69 MVK-KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANL-----KTACFRVP-C 121 ++ + P+ + WP ++LV+ + L ++ ++ R P C Sbjct: 667 QLEPVRKQISPILWDFMEAAWPSSISLVIARAPWMEFFGLGDSSKYIGTPQSIAIRNPDC 726 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 LI G P+A+ SAN +G+ T+ + + + ++ ++ G S + ST+V Sbjct: 727 TVATHLINAVG-PIAVTSANPTGEADTTHHNQVY-AKLGDKVDGVLCDGPSPENIASTVV 784 Query: 182 NVQCEK----KVRILRPG 195 + C K ++ R G Sbjct: 785 D--CTKIESGQIGFFRVG 800 >gi|87119434|ref|ZP_01075331.1| putative translation factor [Marinomonas sp. MED121] gi|86164910|gb|EAQ66178.1| putative translation factor [Marinomonas sp. MED121] Length = 206 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 45/188 (23%), Positives = 78/188 (41%), Gaps = 10/188 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +R+A + + G I PT+ Y L + +A+ R+ +I++ + D+S + Sbjct: 17 IRQATDIIRNGGVIVYPTDCGYSLGCHIGDKSALDRIRQIRRLDDKHNFTLVCKDLSEIS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127 +A D L K PGP T + S +HP KT R+P + L Sbjct: 77 TYARFDNRLYRLLKHHTPGPYTFIFGATSEVPRRLLHP----KRKTIGIRIPENKIVQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ G P+ S + + + ++ ++ L+IDGG G+E T V Sbjct: 133 LDELGEPIMSSSLILPNETLPMMDPYDIRDTLQHQLDLVIDGGYC--GMEPTTVIKMDLD 190 Query: 188 KVRILRPG 195 + ILR G Sbjct: 191 DMAILRQG 198 >gi|313229165|emb|CBY23750.1| unnamed protein product [Oikopleura dioica] Length = 243 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 54/224 (24%), Positives = 88/224 (39%), Gaps = 45/224 (20%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH----------- 73 IA PT+T++G+A + + RR+YEIK R P+ S I + ++ Sbjct: 21 IAFPTDTLFGIAAQISSESGYRRIYEIKGRSEAKPVAVCFSTIPQILQYLPALDRFRELL 80 Query: 74 ----ASVDPLSL-------------------HLAKLFWPGPLTLVLDLLSTTDIHPLSTA 110 + P+++ L PGP+TLV+ H Sbjct: 81 MHGRSEAKPVAVCFSTIPQILQYLPALDRFRELLSRLLPGPVTLVVPRGKFIPEH--VNP 138 Query: 111 NLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVK-----HILSSSICKEIPL 165 N +T R+P +L+ + PL + SAN+SG S H L +I E L Sbjct: 139 NCETIGIRIPDNTISRLL-SQAEPLCLTSANKSGAKSAITSNDFADLHPLLDAIV-ETEL 196 Query: 166 IIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVE 209 I +S+ G ST+V + + K +R G + + + E Sbjct: 197 GIPTSMSRAG--STVVELNLQAKTYFIRRKGCAFDATVASFTAE 238 >gi|237745676|ref|ZP_04576156.1| translation factor [Oxalobacter formigenes HOxBLS] gi|229377027|gb|EEO27118.1| translation factor [Oxalobacter formigenes HOxBLS] Length = 208 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 46/189 (24%), Positives = 87/189 (46%), Gaps = 6/189 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S ++KA + + G + +PT++ Y L + A+ R+ +I++ + L D+ Sbjct: 15 SRLIKKAADVVRGGGVVVMPTDSSYALVCRLDDKAAVDRIRQIRQMDERHLLTLLCRDLK 74 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKK 126 V +A VD + L K PG T +L +T ++ LS + KT R+P + Sbjct: 75 EVGSYARVDNSAYRLLKAATPGAFTFILQ--ATKEVPRRLSHPSRKTIGLRIPDNRIDQA 132 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+E G PL + G + + + K + +IDGG + L +T++++ Sbjct: 133 LLEELGEPLIGTTLILPGDEDPLTEGYAIQERLEKLVDAVIDGGACGL-LPTTVIDL-TG 190 Query: 187 KKVRILRPG 195 K+ ++R G Sbjct: 191 KEPELVRSG 199 >gi|221103657|ref|XP_002161835.1| PREDICTED: similar to predicted protein, partial [Hydra magnipapillata] Length = 139 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 13/114 (11%) Query: 89 PGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQIS 147 PGP+TLV S + + T+N + R+P C F + L + P+A+ SAN S +S Sbjct: 12 PGPVTLVFQRSSLLNSYLNPTSN--SIGVRIPKCAFIQTLAQKCQQPIALTSANISSAMS 69 Query: 148 ITNVKHILSSSICKEIPLIIDGGI------SKIGLESTIVNVQCEKKVRILRPG 195 ++K + ++ LI+DGG S++G ST+V++ E + I+R G Sbjct: 70 SLDIKEF--EELWPKLDLIVDGGTLGSSEQSRLG--STVVDLTKEGEFTIIREG 119 >gi|89094112|ref|ZP_01167055.1| hypothetical protein MED92_16255 [Oceanospirillum sp. MED92] gi|89081587|gb|EAR60816.1| hypothetical protein MED92_16255 [Oceanospirillum sp. MED92] Length = 205 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 45/192 (23%), Positives = 80/192 (41%), Gaps = 10/192 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E ++ G + PT+ Y L + +A+ ++ I++ + D+S + Sbjct: 17 INQAVEIINRGGVVIYPTDCAYALGCHLGDKSALEKIKRIRQLDDKHNFTLVCRDLSEIS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127 +A VD L K PG T +L S +HP +T R+P L Sbjct: 77 TYAKVDNSCYRLLKSHTPGAYTFILKATSEVPRRLLHP----KRRTIGIRIPDNPIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 E G P+ S G+ + + + ++ L+IDGG G+E+T V E+ Sbjct: 133 TEALGEPIMSTSLIMPGEEMPLMDPYEMRELLQHQVDLVIDGGYC--GMEATSVINLVEE 190 Query: 188 KVRILRPGGLEI 199 I+R G ++ Sbjct: 191 TPEIIREGAGDV 202 >gi|160891097|ref|ZP_02072100.1| hypothetical protein BACUNI_03544 [Bacteroides uniformis ATCC 8492] gi|156859318|gb|EDO52749.1| hypothetical protein BACUNI_03544 [Bacteroides uniformis ATCC 8492] Length = 204 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 51/192 (26%), Positives = 80/192 (41%), Gaps = 17/192 (8%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSDISMV 70 L++ + L+ G + PT+T+Y + AI R+ +K P N L D+S V Sbjct: 15 LQQVVDLLNDGGILIYPTDTMYAIGCHGLKERAIERICRLKNIDPKKNNLSIICYDLSKV 74 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130 ++A VD + L K PG T +L+ TT + P N K R+P +I+ Sbjct: 75 SEYAKVDNSTFKLMKRNLPGAFTFILN--GTTRL-PKIFRNRKEVGIRMP---DNSIIQE 128 Query: 131 YGHPLAIP------SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 L P + + I ++ + L+IDGGI G E + V V Sbjct: 129 IARLLDAPIMTTTLPHDDNEDIEYCTDPELIDEKFGDIVDLVIDGGIG--GTEGSTV-VD 185 Query: 185 CEK-KVRILRPG 195 C + I+R G Sbjct: 186 CTNGEPEIIRQG 197 >gi|283832908|ref|ZP_06352649.1| Sua5/YciO/YrdC/YwlC family protein [Citrobacter youngae ATCC 29220] gi|291071513|gb|EFE09622.1| Sua5/YciO/YrdC/YwlC family protein [Citrobacter youngae ATCC 29220] Length = 206 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 77/186 (41%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E + G I PT++ Y L + A+ R+ I+ P + D+S + Sbjct: 17 INQAVEIVRKGGVIVYPTDSGYALGCKIEDKGAMERICRIRHLPDGHNFTLMCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 ++ VD ++ L K PG T +L T ++ L KT RVP L+E Sbjct: 77 TYSFVDNVAFRLIKNNTPGNYTFILK--GTKEVPRRLLQEKRKTIGLRVPSNPIALALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G P+ S G + + + K++ LII GG +G + T V + Sbjct: 135 ALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGGY--LGQQPTTVIDLTDDSP 192 Query: 190 RILRPG 195 +LR G Sbjct: 193 VVLREG 198 >gi|113475329|ref|YP_721390.1| SUA5/yciO/yrdC-like [Trichodesmium erythraeum IMS101] gi|110166377|gb|ABG50917.1| SUA5/yciO/yrdC-like [Trichodesmium erythraeum IMS101] Length = 197 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 49/190 (25%), Positives = 88/190 (46%), Gaps = 26/190 (13%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHL- 83 ++ PT+TV LA P ++++K R P+I ++ + + + L L Sbjct: 19 VSFPTDTVPALAA---RPDRANLIFQVKGRSQDKPVILMGANAASLWPYICGSDQELQLW 75 Query: 84 ---AKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVP-CGFTKKLIETYGHPLAI 137 A +WPG LTLV L +++ P ++ T RVP C +K++ G PLA Sbjct: 76 QRVAGKYWPGQLTLV---LPASEMVPRVMNPVEGTTIGVRVPNCDIARKIMARTG-PLAT 131 Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISK-------IGLESTIVNVQCEKKVR 190 SAN SGQ ++ + + I ++ P ++ +S+ G+ ST+ + Sbjct: 132 TSANISGQPTLGKM-----AEISRQFPEVLVVSLSQSEEIMLTSGVPSTVAKWNGIARWE 186 Query: 191 ILRPGGLEIE 200 ILR G ++++ Sbjct: 187 ILRQGAVKLK 196 >gi|309379075|emb|CBX22377.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 206 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 11/114 (9%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +R+A E L+ G + PT++ Y L + A+ R+ I+K + L +D+S + Sbjct: 17 IRQAVEILNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLSELG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-----HPLSTANLKTACFRVP 120 +A +D + K PGP T +L +T D+ HP KT R+P Sbjct: 77 TYAEIDNVQFRQLKAATPGPYTFILQ--ATKDVPARALHP----KRKTIGLRIP 124 >gi|27573707|pdb|1KK9|A Chain A, Crystal Structure Of E. Coli Ycio Length = 221 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 67/161 (41%), Gaps = 4/161 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E + G I PT++ Y L + A R+ I++ P + D+S + Sbjct: 32 INQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAXERICRIRQLPDGHNFTLXCRDLSELS 91 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 ++ VD ++ L K PG T +L T ++ L KT RVP + L+E Sbjct: 92 TYSFVDNVAFRLXKNNTPGNYTFILK--GTKEVPRRLLQEKRKTIGXRVPSNPIAQALLE 149 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 G P S G + + + K++ LII GG Sbjct: 150 ALGEPXLSTSLXLPGSEFTESDPEEIKDRLEKQVDLIIHGG 190 >gi|300770029|ref|ZP_07079908.1| Sua5/YciO/YrdC/YwlC family protein [Sphingobacterium spiritivorum ATCC 33861] gi|300762505|gb|EFK59322.1| Sua5/YciO/YrdC/YwlC family protein [Sphingobacterium spiritivorum ATCC 33861] Length = 191 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 36/143 (25%), Positives = 68/143 (47%), Gaps = 3/143 (2%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 M+ D + KA E L G I PT+T++G+ D+ NP A+ R+ ++K R +I Sbjct: 1 MTPIDREDINKALETLKNGGLILYPTDTIWGIGCDATNPEAVDRIIQLKGRSKEKSMIVL 60 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCG 122 + + + + + + P + + PLT+V + ++ + A + R V Sbjct: 61 LHNENQLAGYVNDIPEVAYQLIEYTEHPLTIVYS--NAKNLAANAIAEDGSIGIRIVNHP 118 Query: 123 FTKKLIETYGHPLAIPSANRSGQ 145 F +L++ + P+ SAN SG+ Sbjct: 119 FCTQLLQRFRKPIISTSANISGE 141 >gi|325272507|ref|ZP_08138885.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas sp. TJI-51] gi|324102368|gb|EGB99836.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas sp. TJI-51] Length = 185 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 42/142 (29%), Positives = 58/142 (40%), Gaps = 7/142 (4%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + S +++A + AG IA PTE V+GL D N A+ RL +K RP LI Sbjct: 1 MVSSFRVQQAAREIRAGAVIAYPTEAVWGLGCDPWNEDAVYRLLALKSRPVDKGLILVAD 60 Query: 66 DISMVKKHASVDPLS-LHLAKLFWPGPLTLVL---DLLSTTDIHPLSTANLKTA---CFR 118 +I P + WPGP T ++ DLL T L+ + R Sbjct: 61 NIRQFDFLFEDFPEDWIDRMGSTWPGPNTWLVPHQDLLPEWVTGQHDTVALRVSDHPVVR 120 Query: 119 VPCGFTKKLIETYGHPLAIPSA 140 C LI T +P P+A Sbjct: 121 ELCALVGPLISTSCNPGGRPAA 142 >gi|293395933|ref|ZP_06640214.1| Sua5/YciO/YrdC/YwlC family protein [Serratia odorifera DSM 4582] gi|291421431|gb|EFE94679.1| Sua5/YciO/YrdC/YwlC family protein [Serratia odorifera DSM 4582] Length = 206 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 46/186 (24%), Positives = 76/186 (40%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E L G I PT++ Y L A+ R+ I++ + D+S + Sbjct: 17 INQAVEVLRKGGVIVYPTDSGYALGCKLEEKAAMERICRIRQLDGNHNFTLMCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD + L K PG T +L +T ++ L KT RVP L+E Sbjct: 77 TYAYVDNSAFRLIKNNTPGHYTFILK--ATKEVPRRLMNDKRKTIGLRVPSNPIALALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+ + G + +S + K++ L+I GG +G + T V E Sbjct: 135 ELNEPMMSTTLMLPGNDFAESDPEEISDHLGKQVELVIHGGF--LGQQPTTVIDLTESSP 192 Query: 190 RILRPG 195 ++R G Sbjct: 193 EVVREG 198 >gi|239993915|ref|ZP_04714439.1| putative double-stranded RNA-binding protein with unique protein fold, with YrdC/RibB domain [Alteromonas macleodii ATCC 27126] Length = 201 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 45/175 (25%), Positives = 75/175 (42%), Gaps = 6/175 (3%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 AG I PTE V G+ D N A+ L EIK+RP +I ++ S + + + + Sbjct: 29 FQAGSLIVYPTEAVMGIGCDPDNEAAVNALLEIKQRPVEKGVILIAANYSQLLPYVNDNA 88 Query: 79 LSL-HLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPL 135 + +F WPGP T +L S+ + L+ + K A +L G PL Sbjct: 89 IRPDRRTDIFSSWPGPNTWLLPKSSSAPVW-LTGKHSKIAVRVTNHPVVVELCNKLGKPL 147 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 SAN +GQ T + + ++ + ++G + STI + + +R Sbjct: 148 VSTSANLTGQPPATTTEE--AKAVFADSVFYVEGEVGGATKPSTIRDGDTAEVIR 200 >gi|320539230|ref|ZP_08038901.1| putative ribosome maturation factor [Serratia symbiotica str. Tucson] gi|320030868|gb|EFW12876.1| putative ribosome maturation factor [Serratia symbiotica str. Tucson] Length = 189 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 56/134 (41%), Gaps = 6/134 (4%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL-HL 83 IA PTE V+GL D + A+ L +K+R LI +D + + + LS Sbjct: 22 IAYPTEAVFGLGCDPDSEQAVNTLLSLKQRSWEKGLILIAADYQQLIPYINDSALSEPQR 81 Query: 84 AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140 A +F WPGP+T + T T + RV ++L YG PL SA Sbjct: 82 AAIFASWPGPVTWAIPARPETPR--FLTGRFNSLAVRVSAHPLVQQLCRQYGKPLVSTSA 139 Query: 141 NRSGQISITNVKHI 154 N S + N + Sbjct: 140 NFSEREPCRNTNEV 153 >gi|254425585|ref|ZP_05039302.1| (NiFe) hydrogenase maturation protein HypF [Synechococcus sp. PCC 7335] gi|196188008|gb|EDX82973.1| (NiFe) hydrogenase maturation protein HypF [Synechococcus sp. PCC 7335] Length = 751 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 55/206 (26%), Positives = 92/206 (44%), Gaps = 7/206 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L+KA L G +AI + L VD+RN AI RL ++K+RP PL + + + Sbjct: 190 LQKAIASLKQGKIVAIKGLGGFQLLVDARNNEAITRLRQLKQRP-HKPLALICATFAAAR 248 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 +HA + ++ L PGP+ L+ +++ L +P L+ Sbjct: 249 RHAQISEVAAALLTAA-PGPIVLLPRRQDVSELSRLIAPQSPFLGIMLPTTPLHYLLLGA 307 Query: 131 YGHPLAIPSANRSGQISITNVKHILSS-SICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 YGHP+ S N SG+ T+ + L S+ + L+ + I + +S + VQ + Sbjct: 308 YGHPVVATSGNVSGEPICTDNRAALEKLSVIADAFLVHNRPIQRPVDDSVVQIVQ--DRP 365 Query: 190 RILRPG-GLEIETLKRAISVELEYCV 214 +ILR G +T+ A + CV Sbjct: 366 QILRHARGYAPQTIHVANQLPASTCV 391 >gi|149375615|ref|ZP_01893384.1| putative translation factor [Marinobacter algicola DG893] gi|149360017|gb|EDM48472.1| putative translation factor [Marinobacter algicola DG893] Length = 191 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 41/169 (24%), Positives = 70/169 (41%), Gaps = 6/169 (3%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL---SL 81 IA PTE V+GL D + A+ R+ +K+RP LI + + ++ +DPL Sbjct: 26 IAYPTEAVWGLGCDPWDQEAVERVLSLKQRPMEKGLILVAASVDQIR--FLLDPLPKEQQ 83 Query: 82 HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSAN 141 A WPGP+T +L + + + A + L E G PL S N Sbjct: 84 RQAMSHWPGPVTCLLPDVRQQIPQQVRGRHSSIAVRVSDHPVVRALCEAAGFPLVSTSCN 143 Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 +G+ + E+ ++ G + S I+++ K++R Sbjct: 144 PAGRQPARTSWQV-RRYFEGELDWLVPGELGGNRQPSRIIDIVSGKQLR 191 >gi|50084077|ref|YP_045587.1| hypothetical protein ACIAD0865 [Acinetobacter sp. ADP1] gi|49530053|emb|CAG67765.1| conserved hypothetical protein [Acinetobacter sp. ADP1] Length = 211 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 44/196 (22%), Positives = 82/196 (41%), Gaps = 10/196 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E + AG + PT+ Y + N +A+ R+ +I+ + D+S + Sbjct: 22 INQAVERIRAGDVVVYPTDAAYSIGCQIGNKSAMERIAQIRGLGPKHQYAIMCCDLSDIA 81 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127 +A VD L K P T +L S +HP KT R+P + L Sbjct: 82 TYAKVDNAMYRLLKANTPSITTFILPATSEVPKRLMHP----KKKTIGLRIPTNPICQAL 137 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ G P+ + GQ + + + + + K + + IDGG + S IV++ E Sbjct: 138 LQELGEPILTSTLILPGQSDPLDDPYDIENQLGKRVDVFIDGGFGTLSTTS-IVDLSGEN 196 Query: 188 KVRILRPGGLEIETLK 203 ++R G ++ + Sbjct: 197 P-EVVRHGAGDVSAFE 211 >gi|23200231|pdb|1K7J|A Chain A, Structural Genomics, Protein Tf1 Length = 206 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 67/161 (41%), Gaps = 4/161 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E + G I PT++ Y L + A R+ I++ P + D+S + Sbjct: 17 INQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAXERICRIRQLPDGHNFTLXCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 ++ VD ++ L K PG T +L T ++ L KT RVP + L+E Sbjct: 77 TYSFVDNVAFRLXKNNTPGNYTFILK--GTKEVPRRLLQEKRKTIGXRVPSNPIAQALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 G P S G + + + K++ LII GG Sbjct: 135 ALGEPXLSTSLXLPGSEFTESDPEEIKDRLEKQVDLIIHGG 175 >gi|332976018|gb|EGK12889.1| Sua5/YciO/YrdC/YwlC family protein [Psychrobacter sp. 1501(2011)] Length = 228 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 36/63 (57%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A ++L G +A PTE+V+G+ D+ N A+ ++ IK RPA +I +I Sbjct: 9 TTEIEQAAQWLQQGKLLAYPTESVWGIGCDAYNEEAVNQILTIKNRPAEKGMIVVTDNID 68 Query: 69 MVK 71 V+ Sbjct: 69 RVR 71 >gi|290770141|gb|ADD61901.1| putative protein [uncultured organism] Length = 204 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 51/192 (26%), Positives = 80/192 (41%), Gaps = 17/192 (8%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSDISMV 70 L++ + L+ G + PT+T+Y + AI R+ +K P N L D+S V Sbjct: 15 LQQVIDLLNDGGILIYPTDTMYAIGCHGLKERAIERICRLKDIDPKKNNLSIICYDLSKV 74 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130 ++A VD + L K PG T +L+ TT + P N K R+P +I+ Sbjct: 75 SEYAKVDNSTFKLMKRNLPGAFTFILN--GTTRL-PKIFRNRKEVGIRMP---DNSIIQE 128 Query: 131 YGHPLAIP------SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 L P + + I ++ + L+IDGGI G E + V V Sbjct: 129 IARLLDAPIMTTTLPHDDNEDIEYCTDPELIDEKFGDIVDLVIDGGIG--GTEGSTV-VD 185 Query: 185 CEK-KVRILRPG 195 C + I+R G Sbjct: 186 CTNGEPEIIRQG 197 >gi|170719276|ref|YP_001746964.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas putida W619] gi|212288216|sp|B1J499|RIMN_PSEPW RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|169757279|gb|ACA70595.1| SUA5/yciO/yrdC domain [Pseudomonas putida W619] Length = 185 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 52/200 (26%), Positives = 78/200 (39%), Gaps = 25/200 (12%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + S +++A + AG IA PTE V+GL D N A+ RL +K RP LI Sbjct: 1 MVSSWRVQQAAREIRAGAVIAYPTEAVWGLGCDPWNEDAVYRLLALKSRPVDKGLILVAD 60 Query: 66 DISMVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVP--- 120 +I P + WPGP T L+ D+ P T T RV Sbjct: 61 NIRQFDFLFEDFPEDWIDRMGSTWPGPNTW---LVPHQDLLPEWVTGQHDTVALRVSDHP 117 Query: 121 -----CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 C LI T +P P+A ++ + H ++ +++ G + Sbjct: 118 QVRELCALVGPLISTSCNPGGRPAAK--SRLRVEQYFH-------GDLDMVLGGALGGRK 168 Query: 176 LESTIVNVQCEKKVRILRPG 195 S I N+ + I+RPG Sbjct: 169 NPSVIRNLATGE---IVRPG 185 >gi|317481004|ref|ZP_07940084.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 4_1_36] gi|316902897|gb|EFV24771.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 4_1_36] Length = 204 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 51/192 (26%), Positives = 79/192 (41%), Gaps = 17/192 (8%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSDISMV 70 L++ + L+ G + PT+T+Y + AI R+ +K P N L D+S V Sbjct: 15 LQQVVDLLNDGGILIYPTDTMYAIGCHGLKERAIERICRLKNIDPKKNNLSIICYDLSKV 74 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130 ++A VD + L K PG T +L+ TT + P N K R+P +I+ Sbjct: 75 SEYAKVDNATFKLMKRNLPGAFTFILN--GTTRL-PKIFRNRKEVGIRMP---DNSIIQE 128 Query: 131 YGHPLAIPSANRS------GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 L P + I ++ + L+IDGGI G E + V V Sbjct: 129 IARLLDAPIMTTTLPHEDNEDIEYCTDPELIDEKFGDIVDLVIDGGIG--GTEGSTV-VD 185 Query: 185 CEK-KVRILRPG 195 C + I+R G Sbjct: 186 CTNGEPEIIRQG 197 >gi|194477096|ref|YP_002049275.1| Putative translation factor (SUA5) [Paulinella chromatophora] gi|171192103|gb|ACB43065.1| Putative translation factor (SUA5) [Paulinella chromatophora] Length = 203 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 55/182 (30%), Positives = 86/182 (47%), Gaps = 17/182 (9%) Query: 21 AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80 AG P PT+T+ +A P ++++E+K R PLI + ++ K + LS Sbjct: 16 AGSPGIFPTDTLPAIATI---PGKAKQIWELKHRIKSKPLILMGHEAELLFKFIAQPILS 72 Query: 81 --LHLAKLFWPGPLTLVLDL--LSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPL 135 + + +WPG LT+++ L +++PL + RVP C T L+ G PL Sbjct: 73 DCYKVGERYWPGALTIIVPASGLIVKELNPLGN----SIGLRVPACRSTLDLLSRTG-PL 127 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLI--IDGGISKIGLESTIVNVQCEKKVRILR 193 A SAN SG+ H +S+ K IPL+ + + I STIV + K +I R Sbjct: 128 ATSSANISGKYPYL-FPHQVSADF-KNIPLLGPLPWPKNTITTGSTIVELYGSGKWKIHR 185 Query: 194 PG 195 G Sbjct: 186 QG 187 >gi|84394230|ref|ZP_00992958.1| Putative translation factor [Vibrio splendidus 12B01] gi|84375144|gb|EAP92063.1| Putative translation factor [Vibrio splendidus 12B01] Length = 206 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 45/185 (24%), Positives = 78/185 (42%), Gaps = 6/185 (3%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 +A + G + PT++ Y L N A+ R+ +I++ + D+S + + Sbjct: 19 QAVAIIRNGGVVVYPTDSGYALGCQLENKQALERICKIRRIDDKHNFTLLCRDLSELSLY 78 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIETY 131 A VD ++ L K PG T + +T ++ L A KT RVP L+E Sbjct: 79 ARVDNVAFRLLKAHTPGAYTFIFK--ATKEVPKRLMNAKRKTIGIRVPDNKIALDLLEAM 136 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 G PL S G + + + S+ + +I++GG +G + T V + + Sbjct: 137 GEPLMSTSLILPGNETTESDPEEIRDSLEHAVDVILNGGY--LGEQPTTVIDFSDDDAVV 194 Query: 192 LRPGG 196 LR G Sbjct: 195 LRRGA 199 >gi|270294398|ref|ZP_06200600.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. D20] gi|270275865|gb|EFA21725.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. D20] Length = 204 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 51/192 (26%), Positives = 80/192 (41%), Gaps = 17/192 (8%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSDISMV 70 L++ + L+ G + PT+T+Y + AI R+ +K P N L D+S V Sbjct: 15 LQQVIDLLNDGGILIYPTDTMYAIGCHGLKERAIERICRLKDIDPKKNNLSIICYDLSKV 74 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130 ++A VD + L K PG T +L+ TT + P N K R+P +I+ Sbjct: 75 SEYAKVDNSTFKLMKRNLPGAFTFILN--GTTRL-PKIFRNRKEVGIRMP---DNSIIQE 128 Query: 131 YGHPLAIP------SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 L P + + I ++ + L+IDGGI G E + V V Sbjct: 129 IARLLDAPIMTTTLPHDDNEDIEYCTDPELIDEKFGDIVDLVIDGGIG--GTEGSTV-VD 185 Query: 185 CEK-KVRILRPG 195 C + I+R G Sbjct: 186 CTNGEPEIIRQG 197 >gi|264676972|ref|YP_003276878.1| Sua5/YciO/YrdC/YwlC family protein [Comamonas testosteroni CNB-2] gi|262207484|gb|ACY31582.1| Sua5/YciO/YrdC/YwlC family protein [Comamonas testosteroni CNB-2] Length = 214 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 1/109 (0%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A + L G +A+PT++ Y L + A+ R+ I++ + L D+S + Sbjct: 17 IKQAADMLRKGAILAVPTDSSYALVCHLDDKNAVDRMRRIRQINDKHHLTLLCRDLSELA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 +A VD L KL PGP T +L+ S LS + KT RVP Sbjct: 77 NYARVDNRQYRLLKLATPGPYTFILE-ASKEVPKRLSHPSRKTIGLRVP 124 >gi|148545343|ref|YP_001265445.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas putida F1] gi|212288214|sp|A5VWK1|RIMN_PSEP1 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|148509401|gb|ABQ76261.1| SUA5/yciO/yrdC, N-terminal domain [Pseudomonas putida F1] Length = 185 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 51/197 (25%), Positives = 79/197 (40%), Gaps = 19/197 (9%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + S +++A + AG IA PTE V+GL D N A+ RL +K RP LI Sbjct: 1 MVSSFRVQQAAREIRAGAVIAYPTEAVWGLGCDPWNEDAVYRLLALKSRPVDKGLILIAD 60 Query: 66 DISMVKKHASVDPLS-LHLAKLFWPGPLTLVL---DLLSTTDIHPLSTANLKTA---CFR 118 +I P + WPGP T ++ DLL T L+ + R Sbjct: 61 NIRQFDFLFEDFPEDWIDRMGSTWPGPNTWLVPHQDLLPEWVTGQHDTVALRVSDHPVVR 120 Query: 119 VPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 C LI T +P P+A ++ + H ++ L++ G + S Sbjct: 121 ELCALVGPLISTSCNPGGRPAAKT--RLRVEQYFH-------GQLDLVLGGALGGRKNPS 171 Query: 179 TIVNVQCEKKVRILRPG 195 I N+ + ++RPG Sbjct: 172 VIRNLATGE---VVRPG 185 >gi|322515423|ref|ZP_08068414.1| Sua5/YciO/YrdC/YwlC family protein [Actinobacillus ureae ATCC 25976] gi|322118546|gb|EFX90779.1| Sua5/YciO/YrdC/YwlC family protein [Actinobacillus ureae ATCC 25976] Length = 205 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 56/194 (28%), Positives = 80/194 (41%), Gaps = 15/194 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E + G I PT++ Y L AI R+ I+K P + SD+S + Sbjct: 17 INQAVEIIKNGGVIIYPTDSGYALGCAIGEKHAIDRIVAIRKLPENHNFTLVCSDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130 +A V S L K P P T +L +T D+ KT RVP LI Sbjct: 77 TYALVTNQSYRLIKNNTPNPYTFILP--ATKDVPRRLMTKRKTIGIRVPDNAIALALIAE 134 Query: 131 YGHP-----LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 G P L +P +I+ ++ I + + LII GG +G E T V Sbjct: 135 LGEPILSCSLMLPDT----EITESDPDEI-REHLEHRVDLIIHGGY--LGQEPTTVIDLT 187 Query: 186 EKKVRILRPGGLEI 199 E RI+R G +I Sbjct: 188 EDSPRIIREGSGDI 201 >gi|157370905|ref|YP_001478894.1| hypothetical protein Spro_2665 [Serratia proteamaculans 568] gi|157322669|gb|ABV41766.1| Sua5/YciO/YrdC/YwlC family protein [Serratia proteamaculans 568] Length = 206 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 45/186 (24%), Positives = 77/186 (41%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + L G I PT++ Y L +A+ R+ I++ + D+S + Sbjct: 17 INQAVDVLRKGGVIVYPTDSGYALGCKLEEKSAMERICRIRQLDGNHNFTLMCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD + L K PG T +L +T ++ L KT RVP L+E Sbjct: 77 TYAYVDNTAFRLIKNNTPGNYTFILK--ATKEVPRRLMNDKRKTIGLRVPSNPIALALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+ + G + +S + K++ L+I GG +G + T V E Sbjct: 135 VLNEPMMSTTLMLPGNDFAESDPEEISDHLGKQVDLVIHGGF--LGQQPTTVIDLTESAP 192 Query: 190 RILRPG 195 ++R G Sbjct: 193 EVVREG 198 >gi|227497322|ref|ZP_03927554.1| SUA5/YciO/YrdC/YwlC [Actinomyces urogenitalis DSM 15434] gi|226833193|gb|EEH65576.1| SUA5/YciO/YrdC/YwlC [Actinomyces urogenitalis DSM 15434] Length = 242 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 61/221 (27%), Positives = 96/221 (43%), Gaps = 28/221 (12%) Query: 6 ITDSNALRKACEFL----DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP-AMNPL 60 +TD N R + D GL + IPT+TVYG+ + + A+ RL K R M P Sbjct: 1 MTDVNEDRTLSTVVAHVRDGGL-VIIPTDTVYGIGTLASDAAAVARLLAAKGRGRQMPPP 59 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 + + ++ P + L + FWPG LT++LD + D+ T R+P Sbjct: 60 VLVAGPDQLDGVVGALPPAAQALMEAFWPGALTIILD--AAPDLGWDLGETGGTIAVRMP 117 Query: 121 C-GFTKKLIETYGHPLAIPSANRSGQISITNVKHIL---------SSSICKEIP------ 164 +L+ G P+A+ SAN +GQ T+ + S P Sbjct: 118 DHPLALELLRATG-PMAVTSANHTGQPPATDAASARVAFPGRVREAGSPGAGSPDRSEGD 176 Query: 165 -LIIDGGISKIGLESTIVNVQCEKKV--RILRPGGLEIETL 202 L++DGG + + STIV++ + RI+R G L + L Sbjct: 177 ILLLDGGATPGPVPSTIVSLAGDHAYSPRIIRDGVLSLSQL 217 >gi|260220460|emb|CBA28020.1| Uncharacterized protein HI1198 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 207 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 48/186 (25%), Positives = 78/186 (41%), Gaps = 4/186 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++A L+ G +A+PT++ Y L + A +L I+ + L D+S + Sbjct: 17 LKQAIALLEKGGILAVPTDSSYALVCHLDDKAAADKLRSIRGVDDKHHLTLLCRDLSELA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130 +A VD L K PG T +L+ S +S + KT RVP ++L+ Sbjct: 77 NYARVDNRQYRLLKAATPGAYTFILE-ASKEVPRRVSHPSRKTIGLRVPEHQVLQELLAH 135 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 YG L + G+ N + +I +ID G LE T V ++ Sbjct: 136 YGSALLATTLIAKGESEPLNDAQDIRERYEHQIAAVIDAG--ACALEPTTVIDLTGEEPE 193 Query: 191 ILRPGG 196 ++R GG Sbjct: 194 LIRQGG 199 >gi|313496442|gb|ADR57808.1| RimN [Pseudomonas putida BIRD-1] Length = 185 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 42/142 (29%), Positives = 58/142 (40%), Gaps = 7/142 (4%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + S +++A + AG IA PTE V+GL D N A+ RL +K RP LI Sbjct: 1 MVSSFRVQQAAREIRAGAVIAYPTEAVWGLGCDPWNEDAVYRLLALKSRPVDKGLILVAD 60 Query: 66 DISMVKKHASVDPLS-LHLAKLFWPGPLTLVL---DLLSTTDIHPLSTANLKTA---CFR 118 +I P + WPGP T ++ DLL T L+ + R Sbjct: 61 NIRQFDFLFEDFPEDWIDRMGSTWPGPNTWLVPHQDLLPEWVTGQHDTVALRVSDHPVVR 120 Query: 119 VPCGFTKKLIETYGHPLAIPSA 140 C LI T +P P+A Sbjct: 121 ELCALVGPLISTSCNPGGRPAA 142 >gi|330881838|gb|EGH15987.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 254 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 59/147 (40%), Gaps = 14/147 (9%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP-LSLHL 83 IA PTE V+GL D + A+ RL IK RP LI +I P L L Sbjct: 2 IAYPTEAVWGLGCDPWDEEAVYRLLAIKSRPVEKGLILIADNIRQFDFLFEDFPQLWLDR 61 Query: 84 AKLFWPGPLTLVL---DLL--STTDIHPLSTANLKTA---CFRVPCGFTKKLIETYGHPL 135 WPGP T ++ +LL T IH T L+ R C LI T +P Sbjct: 62 MASTWPGPNTWLVPHQNLLPEWITGIH--ETVALRVTDHPTVRELCALVGPLISTSANPA 119 Query: 136 AIPSAN---RSGQISITNVKHILSSSI 159 P+A R Q + +L S+ Sbjct: 120 GRPAARSRLRVEQYFRGQIDGVLGGSL 146 >gi|329894513|ref|ZP_08270327.1| Sua5/YciO/YrdC/YwlC family protein [gamma proteobacterium IMCC3088] gi|328923038|gb|EGG30363.1| Sua5/YciO/YrdC/YwlC family protein [gamma proteobacterium IMCC3088] Length = 207 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 52/197 (26%), Positives = 87/197 (44%), Gaps = 20/197 (10%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAV---DSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A + + AG + PT++ Y L D R IRR+ ++ + L+C D+S Sbjct: 17 IKQAADIIRAGGIVVYPTDSAYALGCHIGDKRALDTIRRIRKLDDKHNFT-LVCR--DLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKK 126 + A VD + L K PGP T +L +T ++ L A KT RVP + Sbjct: 74 ELANFARVDNAAYRLLKAATPGPYTFILK--ATPEVPRRLLHAKRKTIGLRVPENNIAQA 131 Query: 127 LIETYGHPLA----IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 L+ P+ I + I ++ +L ++ L+IDGG GLE T V Sbjct: 132 LLAELNEPMMSVTLIMPDDEDPLIDPYEIRDLLEH----DVDLVIDGGYC--GLEMTTVI 185 Query: 183 VQCEKKVRILRPGGLEI 199 + + ++R G +I Sbjct: 186 DLADDEPVLVRQGKGDI 202 >gi|86141363|ref|ZP_01059909.1| putative Sua5/yciO/yrdC family protein [Leeuwenhoekiella blandensis MED217] gi|85831922|gb|EAQ50377.1| putative Sua5/yciO/yrdC family protein [Leeuwenhoekiella blandensis MED217] Length = 205 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 52/208 (25%), Positives = 90/208 (43%), Gaps = 17/208 (8%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYE---IKKR 54 + + + D N +++ E L I PT+TVYGL D + A+ R+ + +K Sbjct: 3 EFIKLYDENPSEREIKRIVEVLKNDGVIIYPTDTVYGLGCDITSNRALERVAQLRGVKLA 62 Query: 55 PAMNPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK 113 A IC D+S + + +D + L K PGP T + L + P K Sbjct: 63 KANFSFICE--DLSNLSDYVRQIDTPTFKLLKRALPGPYTFI---LPGNNNLPTVFKKKK 117 Query: 114 TACFRVP-CGFTKKLIETYGHPLAIPS-ANRSGQISITNVKHILSSSICKEIPLIIDGGI 171 T RVP + ++ G+P+ S + I T ++ K + ++IDGG Sbjct: 118 TVGIRVPDNNIARAIVSHLGNPIISTSIYDEDDVIEYTTDPELILEKWDKLVDVVIDGGY 177 Query: 172 SKIGLESTIVNVQCEKKVRILRPGGLEI 199 + ST++++ + V +LR G E+ Sbjct: 178 GG-NIPSTVIDLTSGEAV-VLREGKGEL 203 >gi|299531543|ref|ZP_07044949.1| Sua5/YciO/YrdC/YwlC family protein [Comamonas testosteroni S44] gi|298720506|gb|EFI61457.1| Sua5/YciO/YrdC/YwlC family protein [Comamonas testosteroni S44] Length = 214 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 1/109 (0%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A + L G +A+PT++ Y L + A+ R+ I++ + L D+S + Sbjct: 17 IKQAADMLRKGAILAVPTDSSYALVCHLDDKNAVDRMRRIRQINDKHHLTLLCRDLSELA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 +A VD L KL PGP T +L+ S LS + KT RVP Sbjct: 77 NYARVDNRQYRLLKLATPGPYTFILE-ASKEVPKRLSHPSRKTIGLRVP 124 >gi|26986815|ref|NP_742240.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas putida KT2440] gi|81442499|sp|Q88RQ9|RIMN_PSEPK RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|24981412|gb|AAN65704.1|AE016197_2 Sua5/YciO/YrdC/YwlC family protein [Pseudomonas putida KT2440] Length = 185 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 60/147 (40%), Gaps = 17/147 (11%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + S +++A + AG IA PTE V+GL D N A+ RL +K RP LI Sbjct: 1 MVSSFRVQQAAREIRAGAVIAYPTEAVWGLGCDPWNEDAVYRLLALKSRPVDKGLILIAD 60 Query: 66 DISMVK------KHASVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPLSTANLKTA- 115 +I +D +S WPGP T ++ DLL T L+ + Sbjct: 61 NIRQFDFLFEDFPEDWIDRMSST-----WPGPNTWLVPHQDLLPEWVTGQHDTVALRVSD 115 Query: 116 --CFRVPCGFTKKLIETYGHPLAIPSA 140 R C LI T +P P+A Sbjct: 116 HPVVRELCALVGPLISTSCNPGGRPAA 142 >gi|113474502|ref|YP_720563.1| translation factor SUA5 [Trichodesmium erythraeum IMS101] gi|110165550|gb|ABG50090.1| translation factor SUA5 [Trichodesmium erythraeum IMS101] Length = 218 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 49/198 (24%), Positives = 86/198 (43%), Gaps = 14/198 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + K L G + PT+TVY + D +A+ ++ +IK+ PL S +S + Sbjct: 17 VEKIINDLKDGAVMLYPTDTVYAIGCDLYVKSAVEKVRQIKQLSNDKPLTFLCSSLSNIA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVPCG-FTKKLI 128 +A V+ + + K PGP T V L T + P + + KT RVP L+ Sbjct: 77 NYAVVNDSAYRIIKRLIPGPYTFV---LPATKLVPRLVMSPKRKTTGIRVPNNQVCLTLL 133 Query: 129 ETYGHPLAIPSANRSG--------QISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 + +P+ SAN + ++ + K L + + +I+D G I STI Sbjct: 134 KALDNPIISTSANITSDAEGIAPIKVEVVTGKAELFDCLENLVDIIVDDGSDSIYQVSTI 193 Query: 181 VNVQCEKKVRILRPGGLE 198 +++ + I + G+E Sbjct: 194 LDLTGHQPNLIRQGLGVE 211 >gi|113867221|ref|YP_725710.1| putative translation factor (SUA5) [Ralstonia eutropha H16] gi|113525997|emb|CAJ92342.1| putative translation factor (SUA5) [Ralstonia eutropha H16] Length = 207 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 71/164 (43%), Gaps = 4/164 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S +++A + L G IA+PT++ Y LA + A+ RL ++ + L D+S Sbjct: 14 SRLVKQAAQILQKGGLIALPTDSSYALACRLDDKAAVERLRRLRGIDDRHHLTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKK 126 + A VD K PGP +L+ +T ++ LS KT RVP Sbjct: 74 ELGNFARVDNRQYRWLKGATPGPYVFILE--ATKEVPRRLSHPARKTIGVRVPEHAIPLA 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 L+ G PL + G N + + + K++ L++ GG Sbjct: 132 LLGETGEPLISATLQMPGDEEPLNDPAEIRARLEKQLDLVVCGG 175 >gi|86147036|ref|ZP_01065353.1| Putative translation factor [Vibrio sp. MED222] gi|218709945|ref|YP_002417566.1| translation factor [Vibrio splendidus LGP32] gi|85835101|gb|EAQ53242.1| Putative translation factor [Vibrio sp. MED222] gi|218322964|emb|CAV19141.1| hypothetical translation factor [Vibrio splendidus LGP32] Length = 206 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 45/185 (24%), Positives = 78/185 (42%), Gaps = 6/185 (3%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 +A + G + PT++ Y L N A+ R+ +I++ + D+S + + Sbjct: 19 QAVAIIRNGGVVVYPTDSGYALGCQLENKQALERICKIRRIDDKHNFTLLCRDLSELSLY 78 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIETY 131 A VD ++ L K PG T + +T ++ L A KT RVP L+E Sbjct: 79 ARVDNVAFRLLKAHTPGAYTFIFK--ATKEVPKRLMNAKRKTIGIRVPDNKIALDLLEAM 136 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 G PL S G + + + S+ + +I++GG +G + T V + + Sbjct: 137 GEPLMSTSLILPGNETTESDPEEIRDSLEHAVDVILNGGY--LGEQPTTVIDFSDDDAVV 194 Query: 192 LRPGG 196 LR G Sbjct: 195 LRRGA 199 >gi|186681197|ref|YP_001864393.1| Sua5/YciO/YrdC/YwlC family protein [Nostoc punctiforme PCC 73102] gi|186463649|gb|ACC79450.1| Sua5/YciO/YrdC/YwlC family protein [Nostoc punctiforme PCC 73102] Length = 219 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 51/193 (26%), Positives = 84/193 (43%), Gaps = 16/193 (8%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L +G + PT+TVY + D +A+ R+ +IK+ PL +S V +A V Sbjct: 24 LSSGAVMLYPTDTVYAIGCDLNAKSAVERVRQIKQLANDKPLTFLCPSLSNVATYAFVSD 83 Query: 79 LSLHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVPC-GFTKKLIETYGHPL 135 + + K PGP T LL T + P + + K+ RVP +L+ G+P+ Sbjct: 84 TAYRIMKRLIPGPYTF---LLPATKLVPRLVQSPKRKSTGIRVPNHTVCLELLAALGNPI 140 Query: 136 AIPSAN------RSGQISI----TNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 SA+ +G I I + L + K + +I+D G STI+++ Sbjct: 141 ISTSAHLPADEADNGMIRIDPETVQSRVELFDRLDKLVDIIVDTGEEPTYEVSTILDMTG 200 Query: 186 EKKVRILRPGGLE 198 ++ I R G E Sbjct: 201 DEAAIIRRGLGWE 213 >gi|312883596|ref|ZP_07743321.1| YrdC family protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309368819|gb|EFP96346.1| YrdC family protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 206 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 46/186 (24%), Positives = 77/186 (41%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + G + PT++ Y L N A+ R+ +I++ + D+S + Sbjct: 17 INQAVAIIRNGGVVVYPTDSGYALGCQLENKQALERICQIRRLDDKHNFTLLCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD + L K PGP T + T ++ L + KT RVP L+E Sbjct: 77 LYARVDNTAFRLLKNNTPGPYTFIFK--GTKEVPRRLMNSKRKTIGIRVPDNRIALDLLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL S GQ + + + + I++GG +G + T V E + Sbjct: 135 ALGEPLMSTSLILPGQDVTESDPEDIRDKLEHAVDCILNGGY--LGEQPTTVVDFSEDEP 192 Query: 190 RILRPG 195 I+R G Sbjct: 193 VIVRMG 198 >gi|302850327|ref|XP_002956691.1| hypothetical protein VOLCADRAFT_107339 [Volvox carteri f. nagariensis] gi|300258052|gb|EFJ42293.1| hypothetical protein VOLCADRAFT_107339 [Volvox carteri f. nagariensis] Length = 233 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 10/109 (9%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 +D+ L + + L G IPT+T+ + D N A++RLY +K+ A PL C V + Sbjct: 61 SDAWRLEQIVDLLKNGAVGVIPTDTLPAIVCDLHNKDAVQRLYTVKEMDAKKPLSCLVPN 120 Query: 67 ISMVKKHASVDPLS--------LHLAKLFWPGPLTL--VLDLLSTTDIH 105 +S V ++ + P S ++ + PGP L V +L T +H Sbjct: 121 LSAVTQYTTGFPASNTPGSPNWFNVVRRLVPGPTILEGVGGVLLCTSVH 169 >gi|217970101|ref|YP_002355335.1| Sua5/YciO/YrdC/YwlC family protein [Thauera sp. MZ1T] gi|217507428|gb|ACK54439.1| Sua5/YciO/YrdC/YwlC family protein [Thauera sp. MZ1T] Length = 207 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 7/112 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +R+A E L G +A+PT++ Y LA + + R+ I+ + D+S + Sbjct: 17 IRQAAEILRGGGLVALPTDSAYALACQVGDAALLDRIRRIRGVDERHHFTLMCRDLSEIG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLD---LLSTTDIHPLSTANLKTACFRVP 120 +A VD L K PGP T +L+ L +HP KT RVP Sbjct: 77 TYARVDNSQYRLLKAVTPGPYTFILEGTKELPRRVLHP----KRKTIGLRVP 124 >gi|159039551|ref|YP_001538804.1| Sua5/YciO/YrdC/YwlC family protein [Salinispora arenicola CNS-205] gi|157918386|gb|ABV99813.1| Sua5/YciO/YrdC/YwlC family protein [Salinispora arenicola CNS-205] Length = 214 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 46/200 (23%), Positives = 89/200 (44%), Gaps = 20/200 (10%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIK-KRPAMNPLICHVSDISMVKKH 73 A E + G + +PT+TVYG+ D+ P A++ L + K RP P+ ++ Sbjct: 18 AIEAVRGGELVVLPTDTVYGVGADAFTPHAVKALLDAKGGRPVPPPV--------LIGSR 69 Query: 74 ASVDPLSLHLAK-------LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126 ++D L L + FWPG LT+V++ + T+ T R+P Sbjct: 70 RTLDGLVFRLPRAARDLVEAFWPGALTIVVEHSPSLRWDLGETSG--TVAVRMPLHPVAL 127 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 + P+A+ SAN +G + T + + + ++ G + + STIV++ Sbjct: 128 EVLRETGPMAVASANTAGLPAATTAEAA-RGQLAYSVRTYLEAGPAVDPVPSTIVDLTGA 186 Query: 187 KKVRILRPGGLEIETLKRAI 206 +++R G + ++ L+ + Sbjct: 187 VP-QLVRAGAIGLDRLRDVV 205 >gi|167031107|ref|YP_001666338.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas putida GB-1] gi|212288215|sp|B0KF32|RIMN_PSEPG RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|166857595|gb|ABY96002.1| SUA5/yciO/yrdC domain [Pseudomonas putida GB-1] Length = 185 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 52/200 (26%), Positives = 78/200 (39%), Gaps = 25/200 (12%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + S +++A + AG IA PTE V+GL D N A+ RL +K RP LI Sbjct: 1 MVSSFRVQQAAREIRAGAVIAYPTEAVWGLGCDPWNEDAVYRLLALKSRPVDKGLILIAD 60 Query: 66 DISMVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVP--- 120 +I P + WPGP T L+ D+ P T T RV Sbjct: 61 NIRQFDFLFEDFPEDWIERMGSTWPGPNTW---LVPHQDLLPEWVTGKHDTVALRVTDHP 117 Query: 121 -----CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 C LI T +P P+A ++ + H ++ L++ G + Sbjct: 118 QVRELCALVGPLISTSCNPGGRPAAKT--RLRVEQYFH-------GQLDLVLGGALGGRK 168 Query: 176 LESTIVNVQCEKKVRILRPG 195 S I N+ + ++RPG Sbjct: 169 NPSVIRNLATGE---VVRPG 185 >gi|319760358|ref|YP_004124296.1| putative ribosome maturation factor [Candidatus Blochmannia vafer str. BVAF] gi|318039072|gb|ADV33622.1| putative ribosome maturation factor [Candidatus Blochmannia vafer str. BVAF] Length = 191 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 67/149 (44%), Gaps = 9/149 (6%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I SIT+ +++ L I PTE+V+GL + + +AIR L +IK+R L Sbjct: 1 MIINSITEY-SIKNLSMQLKKNRVIIYPTESVFGLGCNPDSESAIRTLLKIKRRSWKKGL 59 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 I ++ S + K+ LS + L WPGP+T V T T + Sbjct: 60 ILVAANYSQLLKYVDDRLLSDNQRLLVFSTWPGPVTWVFPARVGTPY--WLTGQFSSIAV 117 Query: 118 RVPCGFT--KKLIETYGHPLAIPSANRSG 144 RV F + L +G PL SAN SG Sbjct: 118 RV-SDFKPIRYLCLDFGKPLVSTSANLSG 145 >gi|126695682|ref|YP_001090568.1| putative translation factor (SUA5) [Prochlorococcus marinus str. MIT 9301] gi|126542725|gb|ABO16967.1| Putative translation factor (SUA5) [Prochlorococcus marinus str. MIT 9301] Length = 193 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 58/199 (29%), Positives = 90/199 (45%), Gaps = 22/199 (11%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD----IS 68 + A + L++GLPI PT+T+ + P +Y+ KKR PLI S+ I Sbjct: 7 KSALKTLNSGLPIIFPTDTLPAIGCL---PKFSNIIYKFKKRDRNKPLILMGSEYKHLID 63 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128 V + A D ++A +WPG LT+V+ ++ T+N T R+P K + Sbjct: 64 YVHESAKKD--YENIASKYWPGALTIVVPASEKQTVN--LTSNDLTIGLRIPNSCIAKSL 119 Query: 129 ETYGHPLAIPSANRSG-QISITNVKHILSSSICKEIPLI-IDGGI---SKIGLESTIVNV 183 PL SAN SG + SIT + I + P + I G I G STI+ Sbjct: 120 LRETGPLLTSSANISGFKGSIT------AEGIALDFPSVKIYGPIPWEKSSGKASTIIFW 173 Query: 184 QCEKKVRILRPGGLEIETL 202 + R++R G + ++ L Sbjct: 174 KKSGNWRLIREGEVLVKEL 192 >gi|33241612|ref|NP_876553.1| SUA5 protein [Chlamydophila pneumoniae TW-183] gi|33236120|gb|AAP98210.1| SUA5 protein [Chlamydophila pneumoniae TW-183] Length = 286 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 73/162 (45%), Gaps = 12/162 (7%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS--VDPL 79 G +A+PT+TVYG + P A RLY +K R +V+ I ++ + + P Sbjct: 22 GKIVALPTDTVYGFVLSLYAPEAEERLYALKDREPSKAFALYVNSIEDIENISGYPLSPT 81 Query: 80 SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPS 139 + LA+LF PG +TLV+ H +T FR+ + I + L S Sbjct: 82 AKKLAQLF-PGAITLVVK-------HRNPRFPKETLAFRIVDHSVVREIVDHCGTLIGTS 133 Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 AN S S + I + ++ I DG S GLEST+V Sbjct: 134 ANLSEFPSALTAQEIFADFADHDL-CIFDGPCSH-GLESTVV 173 >gi|257455999|ref|ZP_05621208.1| SUA5/YciO/yrdC domain protein [Enhydrobacter aerosaccus SK60] gi|257446588|gb|EEV21622.1| SUA5/YciO/yrdC domain protein [Enhydrobacter aerosaccus SK60] Length = 201 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 1/68 (1%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 M D+ L +FL AG +A PTE V+G+ D N A++++ IK+RP +I Sbjct: 1 MQFNDTQ-LDAVQQFLQAGNLLAYPTEAVWGIGCDPFNEIAVKQILAIKQRPIEKGMIVI 59 Query: 64 VSDISMVK 71 DI+ ++ Sbjct: 60 TGDIAHIQ 67 >gi|62180287|ref|YP_216704.1| hypothetical protein SC1717 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62127920|gb|AAX65623.1| putative translation factor [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322714761|gb|EFZ06332.1| Uncharacterized protein yciO [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 206 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 46/187 (24%), Positives = 83/187 (44%), Gaps = 8/187 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + + G I PT++ Y L + A+ R+ I+ P + D+S + Sbjct: 17 INQAVDIVRKGGVIVYPTDSGYALGCKIEDKGAMERICRIRHLPDGHNFTLMCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 ++ VD ++ L K PG T +L T ++ L KT RVP L++ Sbjct: 77 TYSYVDNVAFRLMKNNTPGNYTFILK--GTKEVPRRLLQEKRKTIGLRVPSNPIALALLD 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKK 188 T G P+ S G + + + K++ LII GG +G + +T++++ + Sbjct: 135 TLGEPMLSTSLMLPGSDFTESDPEEIKDRLEKQVDLIIHGGY--LGQQPTTVIDLTNDSP 192 Query: 189 VRILRPG 195 V +LR G Sbjct: 193 V-VLREG 198 >gi|16760160|ref|NP_455777.1| hypothetical protein STY1330 [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16765064|ref|NP_460679.1| hypothetical protein STM1720 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29142069|ref|NP_805411.1| hypothetical protein t1633 [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56413354|ref|YP_150429.1| hypothetical protein SPA1156 [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161613790|ref|YP_001587755.1| hypothetical protein SPAB_01524 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167549771|ref|ZP_02343529.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168230159|ref|ZP_02655217.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168237773|ref|ZP_02662831.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168241299|ref|ZP_02666231.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168260058|ref|ZP_02682031.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168462805|ref|ZP_02696736.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168819543|ref|ZP_02831543.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194443555|ref|YP_002040974.1| hypothetical protein SNSL254_A1847 [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194451404|ref|YP_002045767.1| hypothetical protein SeHA_C1910 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194470175|ref|ZP_03076159.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194734510|ref|YP_002114752.1| hypothetical protein SeSA_A1852 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197250623|ref|YP_002146306.1| hypothetical protein SeAg_B1426 [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197262994|ref|ZP_03163068.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197362278|ref|YP_002141915.1| hypothetical protein SSPA1075 [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|200390159|ref|ZP_03216770.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204927841|ref|ZP_03219042.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|207856767|ref|YP_002243418.1| hypothetical protein SEN1313 [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213023265|ref|ZP_03337712.1| hypothetical protein Salmonelentericaenterica_12025 [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213163148|ref|ZP_03348858.1| hypothetical protein Salmoneentericaenterica_25228 [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213421198|ref|ZP_03354264.1| hypothetical protein Salmonentericaenterica_27079 [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213424437|ref|ZP_03357250.1| hypothetical protein SentesTyphi_01480 [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213582659|ref|ZP_03364485.1| hypothetical protein SentesTyph_16218 [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213619078|ref|ZP_03372904.1| hypothetical protein SentesTyp_22475 [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213649102|ref|ZP_03379155.1| hypothetical protein SentesTy_18553 [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213855224|ref|ZP_03383464.1| hypothetical protein SentesT_14592 [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224583788|ref|YP_002637586.1| hypothetical protein SPC_2009 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238911888|ref|ZP_04655725.1| hypothetical protein SentesTe_12251 [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289829088|ref|ZP_06546768.1| hypothetical protein Salmonellentericaenterica_21274 [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25319041|pir||AH0653 conserved hypothetical protein STY1330 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16420250|gb|AAL20638.1| putative translation factor [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16502454|emb|CAD08411.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29137698|gb|AAO69260.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56127611|gb|AAV77117.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161363154|gb|ABX66922.1| hypothetical protein SPAB_01524 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194402218|gb|ACF62440.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194409708|gb|ACF69927.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194456539|gb|EDX45378.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194710012|gb|ACF89233.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195634421|gb|EDX52773.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197093755|emb|CAR59229.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197214326|gb|ACH51723.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197241249|gb|EDY23869.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197289249|gb|EDY28616.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|199602604|gb|EDZ01150.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204323183|gb|EDZ08379.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205325048|gb|EDZ12887.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205335546|gb|EDZ22310.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205339648|gb|EDZ26412.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205343598|gb|EDZ30362.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205350954|gb|EDZ37585.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206708570|emb|CAR32891.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224468315|gb|ACN46145.1| hypothetical protein SPC_2009 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261246910|emb|CBG24727.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|301158248|emb|CBW17747.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912713|dbj|BAJ36687.1| hypothetical protein STMDT12_C17440 [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320085781|emb|CBY95557.1| putative ribosome maturation factor rimN [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321224351|gb|EFX49414.1| YciO family [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323129992|gb|ADX17422.1| Uncharacterized protein yciO [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326623168|gb|EGE29513.1| Uncharacterized protein yciO [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|332988609|gb|AEF07592.1| hypothetical protein STMUK_1692 [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 206 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 46/187 (24%), Positives = 83/187 (44%), Gaps = 8/187 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + + G I PT++ Y L + A+ R+ I+ P + D+S + Sbjct: 17 INQAVDIVRKGGVIVYPTDSGYALGCKIEDKGAMERICRIRHLPDGHNFTLMCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 ++ VD ++ L K PG T +L T ++ L KT RVP L++ Sbjct: 77 TYSYVDNVAFRLMKNNTPGNYTFILK--GTKEVPRRLLQEKRKTIGLRVPSNPIALALLD 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKK 188 T G P+ S G + + + K++ LII GG +G + +T++++ + Sbjct: 135 TLGEPMLSTSLMLPGSDFTESDPEEIKDRLEKQVDLIIHGGY--LGQQPTTVIDLTNDSP 192 Query: 189 VRILRPG 195 V +LR G Sbjct: 193 V-VLREG 198 >gi|315634118|ref|ZP_07889407.1| Sua5/YciO/YrdC/YwlC family protein [Aggregatibacter segnis ATCC 33393] gi|315477368|gb|EFU68111.1| Sua5/YciO/YrdC/YwlC family protein [Aggregatibacter segnis ATCC 33393] Length = 207 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 54/194 (27%), Positives = 89/194 (45%), Gaps = 21/194 (10%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E L G I PT++ Y L + A+ R+ +I++ P + SD+S + Sbjct: 17 INQAVEILRNGGVIVYPTDSGYALGCMIGDKHAMDRIVQIRQLPEGHNFTLVCSDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 ++ V + L K PG T +L +T ++ L T+ KT RVP L++ Sbjct: 77 NYSLVTNSAYRLIKNNTPGRYTFILT--ATKELPRRLMTSKRKTIGIRVPDNQIALDLLK 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSS-------ICKEIPLIIDGGISKIGLE-STIV 181 G P+ S + + N +HI S + ++ LII GG +G E +T+V Sbjct: 135 ALGEPIL------SCSLMLPNEEHITQSDPEEIRDRLEHQVDLIIHGGY--LGQEPTTVV 186 Query: 182 NVQCEKKVRILRPG 195 ++ E V ILR G Sbjct: 187 DLTTETPV-ILREG 199 >gi|34541562|ref|NP_906041.1| Sua5/YciO/YrdC/YwlC family protein [Porphyromonas gingivalis W83] gi|34397879|gb|AAQ66940.1| Sua5/YciO/YrdC/YwlC family protein [Porphyromonas gingivalis W83] Length = 191 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 23/164 (14%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 +KA E + G I PT+T++G+ D+ N A++R+Y +K+R ++ ++ Sbjct: 11 KKAAEVMRKGGIILYPTDTIWGIGCDATNEEAVQRIYRLKERADSKSMLV------LIDS 64 Query: 73 HASVDPLSLHLAKLFWP------GPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125 A + L + +L W PLT++ + P A+ + R+ F+ Sbjct: 65 EAKLQGLMDEVPELAWDLIELTTKPLTIIYP--QAKGVAPALIASDGSLGIRLTRETFSA 122 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169 +L P+ SAN SGQ S I P I+DG Sbjct: 123 ELCRLMRVPIVSTSANISGQPSARTFGEIA--------PAILDG 158 >gi|298493014|ref|YP_003723191.1| Sua5/YciO/YrdC/YwlC family protein ['Nostoc azollae' 0708] gi|298234932|gb|ADI66068.1| Sua5/YciO/YrdC/YwlC family protein ['Nostoc azollae' 0708] Length = 219 Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust. Identities = 53/193 (27%), Positives = 81/193 (41%), Gaps = 16/193 (8%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L +G + PT+TVY + D +A+ R+ +IK+ PL +S V +A V Sbjct: 24 LSSGAIMLYPTDTVYAIGCDLNAKSAVERVRQIKQLGNDKPLTFLCPSLSNVATYAFVSD 83 Query: 79 LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTAN--LKTACFRVPC-GFTKKLIETYGHPL 135 ++ + K PG T LL T + P N KT RVP L+E G+P+ Sbjct: 84 IAYRIMKRLIPGSYTF---LLPATKLVPRLVQNPKRKTTGIRVPDHTVCLALLEALGNPI 140 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPL----------IIDGGISKIGLESTIVNVQC 185 SA+ + + + S +I + L IID G STI+++ Sbjct: 141 ISTSAHLPPKDIDYEIAELDSENIMSRVELFDRWDNLVDIIIDTGEEPTYHVSTILDLTD 200 Query: 186 EKKVRILRPGGLE 198 E+ V R G E Sbjct: 201 EEPVITRRGLGWE 213 >gi|307152837|ref|YP_003888221.1| SUA5/yciO/yrdC domain-containing protein [Cyanothece sp. PCC 7822] gi|306983065|gb|ADN14946.1| SUA5/yciO/yrdC domain protein [Cyanothece sp. PCC 7822] Length = 213 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 49/193 (25%), Positives = 87/193 (45%), Gaps = 7/193 (3%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L++G + +PTE Y + + P AIR++ ++K+ A PL+ ++ V++ V Sbjct: 21 LESGELVIVPTEVSYIIVAHAFKPRAIRKIAQLKRWNAPQPLVL-LTRREKVEEFGVVSA 79 Query: 79 LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIP 138 S L F P P+TL++ +T I TA P F L+ P+ Sbjct: 80 ASQKLINHF-PYPITLIIPKKNT--IPDTITAQHSALFISCPDEFIYNLVAQIPFPMVCT 136 Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLE 198 +A S + + + ++PLI+DGG K + T+++ IL G + Sbjct: 137 TAGFSDEYKARKYRTAI-ELFDGQVPLIVDGGDCKYDSKGTLIDCTLPTPT-ILNFGTVS 194 Query: 199 IETLKRAISVELE 211 ++ L R+I E+E Sbjct: 195 VDDL-RSILPEIE 206 >gi|317494303|ref|ZP_07952717.1| yrdC domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917553|gb|EFV38898.1| yrdC domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 189 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 54/124 (43%), Gaps = 6/124 (4%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 +A PTE V+GL D + A+ L ++K+R LI ++ ++ + LS Sbjct: 22 VAYPTEAVFGLGCDPDSELAVHALLDLKQRQWEKGLILIAANYEQLQPYVDDAKLSGERR 81 Query: 85 KL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140 + +WPGP+T V+ TT T RV + L +G PL SA Sbjct: 82 EEVFSYWPGPVTWVMPAKPTTP--QWLRGRFSTIAVRVSDHPLVQTLCLQFGKPLVSTSA 139 Query: 141 NRSG 144 N SG Sbjct: 140 NLSG 143 >gi|28898727|ref|NP_798332.1| putative translation factor [Vibrio parahaemolyticus RIMD 2210633] gi|153839753|ref|ZP_01992420.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio parahaemolyticus AQ3810] gi|260363729|ref|ZP_05776505.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio parahaemolyticus K5030] gi|260877277|ref|ZP_05889632.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio parahaemolyticus AN-5034] gi|260897776|ref|ZP_05906272.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio parahaemolyticus Peru-466] gi|260903496|ref|ZP_05911891.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio parahaemolyticus AQ4037] gi|28806945|dbj|BAC60216.1| putative translation factor [Vibrio parahaemolyticus RIMD 2210633] gi|149746720|gb|EDM57708.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio parahaemolyticus AQ3810] gi|308087594|gb|EFO37289.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio parahaemolyticus Peru-466] gi|308090289|gb|EFO39984.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio parahaemolyticus AN-5034] gi|308106751|gb|EFO44291.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio parahaemolyticus AQ4037] gi|308114914|gb|EFO52454.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio parahaemolyticus K5030] gi|328474709|gb|EGF45514.1| putative translation factor [Vibrio parahaemolyticus 10329] Length = 206 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 45/186 (24%), Positives = 77/186 (41%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + G + PT++ Y L N A+ R+ +I++ + D+S + Sbjct: 17 INQAVAIIRNGGVVVYPTDSGYALGCQLENKQALERICQIRRLDDKHNFTLLCRDLSEIS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD + L K PGP T + T ++ L A KT RVP L+E Sbjct: 77 LYARVDNGAFRLLKNNTPGPYTFIFK--GTKEVPRRLMNAKRKTIGIRVPNNQIALDLLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL S G + + + + +I++GG +G + T V E + Sbjct: 135 ALGEPLMSTSLILPGSDVTESDPEDIRDKLEHAVDVILNGGY--LGEQPTTVIDFSEGEP 192 Query: 190 RILRPG 195 ++R G Sbjct: 193 EVVRIG 198 >gi|205352606|ref|YP_002226407.1| hypothetical protein SG1394 [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205272387|emb|CAR37267.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326627670|gb|EGE34013.1| hypothetical protein SG9_1422 [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 206 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 46/187 (24%), Positives = 83/187 (44%), Gaps = 8/187 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + + G I PT++ Y L + A+ R+ I+ P + D+S + Sbjct: 17 INQAVDIVRKGGVIVYPTDSGYALGCKIEDKGAMERICRIRHLPDGHNFTLMCRDLSGLS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 ++ VD ++ L K PG T +L T ++ L KT RVP L++ Sbjct: 77 TYSYVDNVAFRLMKNNTPGNYTFILK--GTKEVPRRLLQEKRKTIGLRVPSNPIALALLD 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKK 188 T G P+ S G + + + K++ LII GG +G + +T++++ + Sbjct: 135 TLGEPMLSTSLMLPGSDFTESDPEEIKDRLEKQVDLIIHGGY--LGQQPTTVIDLTNDSP 192 Query: 189 VRILRPG 195 V +LR G Sbjct: 193 V-VLREG 198 >gi|309379826|emb|CBX21602.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 166 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 40/168 (23%), Positives = 73/168 (43%), Gaps = 5/168 (2%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-L 83 +A PTE+ YGL A+ +L +KKRP +I + ++ + SL + Sbjct: 2 VAYPTESCYGLGCLPTLAKALGKLAHLKKRPQHKGMIVIGNQFEQLQPLLQMPSESLQAM 61 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANR 142 + WP P T +L S + L R+P ++L + G PL S NR Sbjct: 62 LRKEWPAPKTFLLSAKSCV-LPELRGKQRSKLAVRIPDHAGARRLCQALGMPLVSTSCNR 120 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 +G+ + + + +++ I+ G I + S I++ + K++R Sbjct: 121 AGKRACRTEREV-RRQFGRDV-WIVGGRIGRQKSPSQIIDGETGKRLR 166 >gi|304388786|ref|ZP_07370842.1| translation factor RimN [Neisseria meningitidis ATCC 13091] gi|304337238|gb|EFM03416.1| translation factor RimN [Neisseria meningitidis ATCC 13091] gi|325205095|gb|ADZ00549.1| protein RimN [Neisseria meningitidis M01-240355] Length = 200 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 45/187 (24%), Positives = 80/187 (42%), Gaps = 5/187 (2%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I ++A RK +L G +A PTE+ YGL A+ +L +KKRP +I + Sbjct: 17 IIAASAQRKLSVYLKKGGLVAYPTESCYGLGCLPTLAKALGKLAHLKKRPQHKGMIVIGN 76 Query: 66 DISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF- 123 ++ + +L + + WP P T +L S + L RVP Sbjct: 77 QFEQLQPLLQMPSENLQAMLRKEWPAPKTFLLSAKSCV-LPELRGKQRSKLAVRVPAHVG 135 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 ++L PL S NR+G+ + + + +++ I+ G I + S I++ Sbjct: 136 ARRLCLALQTPLVSTSCNRAGKRACRTEREV-RRQFGRDV-WIVGGRIGRQKSPSQIIDG 193 Query: 184 QCEKKVR 190 + K++R Sbjct: 194 ETGKRLR 200 >gi|283768245|ref|ZP_06341158.1| Sua5/YciO/YrdC/YwlC family protein [Bulleidia extructa W1219] gi|283105122|gb|EFC06493.1| Sua5/YciO/YrdC/YwlC family protein [Bulleidia extructa W1219] Length = 200 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 7/133 (5%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN--PLICHVSDISMVKKHASVDPLSLH 82 +A+PT+TV+G+ + A L ++KKRP P++C +D+ V + + Sbjct: 22 VAVPTDTVFGVCARYDHIQAQENLRDLKKRPETKAFPIMC--ADMEQVLQICEMCEEEKR 79 Query: 83 LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSAN 141 + F PGPLT++L + T R+ ++I G P+ + SAN Sbjct: 80 VMNQFMPGPLTMILK--KKKGVPSFVNGGKDTIAIRLATSPILAEMIGKLGVPVYMTSAN 137 Query: 142 RSGQISITNVKHI 154 SG+ + V+ + Sbjct: 138 VSGEPAALTVEDV 150 >gi|296122837|ref|YP_003630615.1| protein-tyrosine phosphatase, low molecular weight [Planctomyces limnophilus DSM 3776] gi|296015177|gb|ADG68416.1| Protein-tyrosine phosphatase, low molecular weight [Planctomyces limnophilus DSM 3776] Length = 383 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 55/225 (24%), Positives = 89/225 (39%), Gaps = 21/225 (9%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN------PLICH 63 + + + C+ L G + +PTET Y +A + + ++RL + A+N L+ Sbjct: 15 DVIHRVCQSLAQGELVGLPTETTYTVAASALSEVGVQRLKALATELAVNHQPPQFELLLK 74 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTL---------VLDLLSTTDIHPLSTANLKT 114 +D ++ L + WPGP+TL + L T H L TA T Sbjct: 75 AADEAL-DYLVEQSRYGRKLIRRCWPGPVTLRFPKSHCGWFFEQLPETSRH-LLTAPENT 132 Query: 115 ACFRVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173 FRVP ++ PL S + G+ + + + + LI+D G S+ Sbjct: 133 VSFRVPAHTLPADILNLLPGPLIALSEAQPGRPPLRHARDA-DQRFGNNLALIVDDGPSR 191 Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIETLKR-AISVELEYCVDET 217 G T+V + I PG + T+ R A V L C T Sbjct: 192 YGEPGTVVQIG-NNDWNIAFPGVVSDRTMGRLASEVILFACTGNT 235 >gi|227111427|ref|ZP_03825083.1| hypothetical protein PcarbP_00610 [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 206 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 76/186 (40%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + ++ EFL G I PT++ Y L A+ R+ I+ + + D+S + Sbjct: 17 INQSVEFLHKGGVIVYPTDSGYALGCMLGEKNALERICRIRDLGSDHNFTLMCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD + L K PG T +L +T ++ L KT RVP +L+ Sbjct: 77 TYAHVDNSAFRLIKNNTPGNYTFILK--ATKEVPRRLMNEKRKTIGLRVPSNPIALELLA 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 PL + G + + + K++ LII GG +G + T V E Sbjct: 135 ALNEPLMSTTLMLPGNDFAESDPEEIQDRLGKQVDLIIHGG--SLGQQPTTVIDLTESAP 192 Query: 190 RILRPG 195 R+ R G Sbjct: 193 RVAREG 198 >gi|229496359|ref|ZP_04390079.1| Sua5/YciO/YrdC/YwlC family protein [Porphyromonas endodontalis ATCC 35406] gi|229316937|gb|EEN82850.1| Sua5/YciO/YrdC/YwlC family protein [Porphyromonas endodontalis ATCC 35406] Length = 198 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 66/148 (44%), Gaps = 27/148 (18%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA-------------M 57 A+++A + + AG I PT+T++GL D+ N A++R++ +K R + Sbjct: 15 AVQEASKVVKAGGIILYPTDTIWGLGCDATNEEAVQRIFTLKGRAESKAMLLLIDSDAKL 74 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 L+ V DI+ A+V PL+ L +PG + L I P T ++ Sbjct: 75 PGLVREVPDIAYQLIDAAVSPLT-----LIYPGGRNVAPSL-----IAPEGTLGIRITHE 124 Query: 118 RVPCGFTKKLIETYGHPLAIPSANRSGQ 145 F++ L PL SAN SGQ Sbjct: 125 ----AFSRALCAAVRVPLVSTSANLSGQ 148 >gi|90021364|ref|YP_527191.1| hypothetical protein Sde_1719 [Saccharophagus degradans 2-40] gi|89950964|gb|ABD80979.1| Sua5/YciO/YrdC/YwlC [Saccharophagus degradans 2-40] Length = 207 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 50/197 (25%), Positives = 83/197 (42%), Gaps = 15/197 (7%) Query: 2 QIMSITDSNA----LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 Q SI N + ++ + + G IA PT++ Y L + A+ R+ I++ Sbjct: 3 QFFSIHPENPQARLISQSVDIVRRGGLIAYPTDSAYALGCHIGDKLALDRIRAIRQLDKD 62 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKT 114 + D+S + +A VD L K PG T +L S +HP KT Sbjct: 63 HNFTLMCRDLSELANYAKVDNAVFRLIKSHTPGAYTFILPATSEVPRRLMHP----KRKT 118 Query: 115 ACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173 RVP L++ G PL S G + + S+ ++ L+IDGG Sbjct: 119 LGLRVPNNPIALALMDALGEPLMSSSLILPGDTVPLTDPYDIRESLEHQLELVIDGGYC- 177 Query: 174 IGLE-STIVNVQCEKKV 189 G+E +T+V++ ++ V Sbjct: 178 -GMEPTTVVDLTGDEPV 193 >gi|332139435|ref|YP_004425173.1| putative double-stranded RNA-binding protein with unique protein fold, with YrdC/RibB domain [Alteromonas macleodii str. 'Deep ecotype'] gi|327549457|gb|AEA96175.1| putative double-stranded RNA-binding protein with unique protein fold, with YrdC/RibB domain [Alteromonas macleodii str. 'Deep ecotype'] Length = 201 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 48/180 (26%), Positives = 78/180 (43%), Gaps = 16/180 (8%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 +AG I PTE V G+ D N A+ L +IK+RP +I ++ S + + VD Sbjct: 29 FEAGRLIVYPTEAVMGIGCDPDNEAAVNALLDIKQRPVEKGVILIAANYSQLLPY--VDD 86 Query: 79 LSLHLAK---LF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGH 133 ++ + +F WPGP T +L S+ + L+ + K A L G Sbjct: 87 NAIRPDRRTDIFSSWPGPNTWLLPKSSSAPVW-LTGKHSKIAVRVTNHPVVVALCNKLGK 145 Query: 134 PLAIPSANRSGQISITNV---KHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 PL SAN +GQ T+ K + + S+ ++G + STI + + +R Sbjct: 146 PLVSTSANLTGQPPATDTDEAKAVFADSV-----FYVEGKVGGATKPSTIRDGDTAEVIR 200 >gi|311696638|gb|ADP99511.1| Sua5/YciO/YrdC/YwlC family protein [marine bacterium HP15] Length = 190 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 41/171 (23%), Positives = 72/171 (42%), Gaps = 2/171 (1%) Query: 21 AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80 G IA PTE V+GL D + A+ ++ E+K+RP +I S + V+ P Sbjct: 21 GGGVIAYPTEAVWGLGCDPWDQEAVEKVLELKQRPVEKGVILVASSLDQVRFLLDPLPPL 80 Query: 81 LHL-AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPS 139 L A+ WPGP+T +L + + A + L E G PL S Sbjct: 81 LRAEAERHWPGPVTCLLPDPERQVPEWVRGKHSSIAVRVSEHPVVRALCEATGMPLVSTS 140 Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 N +G+ ++ + ++ I+ G + S I+++ +++R Sbjct: 141 CNPAGRQPARHIWQV-RGYFGDQLDWIVPGALGGNRKPSRIIDIVSGQQLR 190 >gi|283785438|ref|YP_003365303.1| hypothetical protein ROD_17371 [Citrobacter rodentium ICC168] gi|282948892|emb|CBG88494.1| conserved hypothetical protein [Citrobacter rodentium ICC168] Length = 206 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 46/186 (24%), Positives = 78/186 (41%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E + G I PT++ Y L + A+ R+ I++ P + D+S + Sbjct: 17 INQAVEIVRKGGVIVYPTDSGYALGCKIEDKGAMERICRIRQLPDGHNFTLMCRDLSDLS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 ++ VD ++ L K PG T +L T ++ L KT RVP +L+ Sbjct: 77 TYSFVDNVAFRLIKNNTPGNYTFILK--GTKEVPRRLLQEKRKTIGLRVPSNPIALELLA 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G P+ S G + + + K++ LII GG +G + T V + Sbjct: 135 ALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGGY--LGQQPTTVIDLTDDSP 192 Query: 190 RILRPG 195 +LR G Sbjct: 193 VVLREG 198 >gi|257068424|ref|YP_003154679.1| translation factor SUA5 [Brachybacterium faecium DSM 4810] gi|256559242|gb|ACU85089.1| translation factor SUA5 [Brachybacterium faecium DSM 4810] Length = 211 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 42/170 (24%), Positives = 73/170 (42%), Gaps = 6/170 (3%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 +A L+AG IA PT++ Y L N + R+ I++ + +D + + + Sbjct: 25 QAAAVLEAGGLIAYPTDSCYALGCALGNAEGLERIRRIRQVGKDHHFTLVCADFAQLGQF 84 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIETY 131 V + L K PGP T +L +T ++ +S T R+P L+E Sbjct: 85 VLVSNPTFRLVKNATPGPYTFILR--ATREVPRKMSHPKKHTVGVRIPDHRVAHALVEAL 142 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 G P+A + GQ ++ + +++ IID G ++G E T V Sbjct: 143 GEPIASSTLLLPGQEEPPTEGWVVQDLLGEQVDAIIDSG--EVGTEPTTV 190 >gi|198245890|ref|YP_002215421.1| hypothetical protein SeD_A1608 [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197940406|gb|ACH77739.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] Length = 206 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 46/187 (24%), Positives = 83/187 (44%), Gaps = 8/187 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + + G I PT++ Y L + A+ R+ I+ P + D+S + Sbjct: 17 INQAVDIVRKGGVIVYPTDSGYALGCKIEDKGAMERICRIRHLPDGHNFTLMCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 ++ VD ++ L K PG T +L T ++ L KT RVP L++ Sbjct: 77 TYSYVDNVAFRLMKNNTPGNYTFILK--GTKEVPRRLLQEKRKTIGLRVPSNPIALALLD 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKK 188 T G P+ S G + + + K++ LII GG +G + +T++++ + Sbjct: 135 TLGEPMLSTSLMLLGSDFTESDPEEIKDRLEKQVDLIIHGGY--LGQQPTTVIDLTNDSP 192 Query: 189 VRILRPG 195 V +LR G Sbjct: 193 V-VLREG 198 >gi|152981334|ref|YP_001352969.1| translation factor (SUA5) [Janthinobacterium sp. Marseille] gi|151281411|gb|ABR89821.1| translation factor (SUA5) [Janthinobacterium sp. Marseille] Length = 207 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 69/159 (43%), Gaps = 4/159 (2%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 +A + + G +A+PT++ Y L + A+ RL I+ + L D+S + + Sbjct: 19 QAVQIVRDGGIVALPTDSCYALVCHLDDKDAVARLRRIRNVDDKHHLTLLCRDLSEIALY 78 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIETY 131 A VD + K PG T +L+ +T ++ LS + KT RVP L+E Sbjct: 79 AKVDNQQYRMLKAATPGAYTFILE--ATKEVPRRLSHPSRKTIGLRVPENRIVHALLEEL 136 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 PL + G+ + + K + L+IDGG Sbjct: 137 AQPLLGTTLILPGEDEPLTDPEDVRDRLNKVVDLVIDGG 175 >gi|298372929|ref|ZP_06982919.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroidetes oral taxon 274 str. F0058] gi|298275833|gb|EFI17384.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroidetes oral taxon 274 str. F0058] Length = 212 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 47/191 (24%), Positives = 80/191 (41%), Gaps = 8/191 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSD 66 + + + K E L G I PT+TVY D +P AI ++ +K P + + D Sbjct: 22 NEHQIAKVIEVLKNGGVIIYPTDTVYAFGCDIFHPKAIEKICRLKHLNPQKSRMAIVCQD 81 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125 +S + +A + + L K PG T LL+ + P + KT R+P Sbjct: 82 LSNISNYAKISTDTFKLLKKNLPGAFTF---LLNGSRQLPSILKDRKTIGIRMPKNNIAL 138 Query: 126 KLIETYGHPLAIPSANRSGQISITNVK-HILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 ++ G+P+ S I+ +L+ + ++IDGG STIV+ Sbjct: 139 DIVRQLGNPIFTTSVIAIDDITEYETDPELLTEKYEDVVDMVIDGGFGD-NTPSTIVDC- 196 Query: 185 CEKKVRILRPG 195 + + I+R G Sbjct: 197 TQNEPEIIRQG 207 >gi|22125943|ref|NP_669366.1| hypothetical protein y2053 [Yersinia pestis KIM 10] gi|45441809|ref|NP_993348.1| hypothetical protein YP_2009 [Yersinia pestis biovar Microtus str. 91001] gi|51596460|ref|YP_070651.1| hypothetical protein YPTB2134 [Yersinia pseudotuberculosis IP 32953] gi|108807565|ref|YP_651481.1| hypothetical protein YPA_1570 [Yersinia pestis Antiqua] gi|108811841|ref|YP_647608.1| hypothetical protein YPN_1679 [Yersinia pestis Nepal516] gi|145598220|ref|YP_001162296.1| hypothetical protein YPDSF_0923 [Yersinia pestis Pestoides F] gi|149365869|ref|ZP_01887904.1| hypothetical protein YPE_1047 [Yersinia pestis CA88-4125] gi|153949288|ref|YP_001400904.1| hypothetical protein YpsIP31758_1929 [Yersinia pseudotuberculosis IP 31758] gi|165927411|ref|ZP_02223243.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165938161|ref|ZP_02226720.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis biovar Orientalis str. IP275] gi|166010763|ref|ZP_02231661.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166210525|ref|ZP_02236560.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167400845|ref|ZP_02306351.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420278|ref|ZP_02312031.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425046|ref|ZP_02316799.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167470516|ref|ZP_02335220.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis FV-1] gi|170024275|ref|YP_001720780.1| hypothetical protein YPK_2040 [Yersinia pseudotuberculosis YPIII] gi|186895509|ref|YP_001872621.1| hypothetical protein YPTS_2203 [Yersinia pseudotuberculosis PB1/+] gi|218929308|ref|YP_002347183.1| hypothetical protein YPO2212 [Yersinia pestis CO92] gi|229894896|ref|ZP_04510074.1| predicted RNA-binding protein [Yersinia pestis Pestoides A] gi|229897639|ref|ZP_04512795.1| predicted RNA-binding protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229898284|ref|ZP_04513431.1| predicted RNA-binding protein [Yersinia pestis biovar Orientalis str. India 195] gi|229902143|ref|ZP_04517264.1| predicted RNA-binding protein [Yersinia pestis Nepal516] gi|270490617|ref|ZP_06207691.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis KIM D27] gi|294503750|ref|YP_003567812.1| hypothetical protein YPZ3_1640 [Yersinia pestis Z176003] gi|21958883|gb|AAM85617.1|AE013807_11 hypothetical protein y2053 [Yersinia pestis KIM 10] gi|45436671|gb|AAS62225.1| Putative translation factor (SUA5) [Yersinia pestis biovar Microtus str. 91001] gi|51589742|emb|CAH21372.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP 32953] gi|108775489|gb|ABG18008.1| translation factor SUA5 [Yersinia pestis Nepal516] gi|108779478|gb|ABG13536.1| translation factor SUA5 [Yersinia pestis Antiqua] gi|115347919|emb|CAL20841.1| conserved hypothetical protein [Yersinia pestis CO92] gi|145209916|gb|ABP39323.1| translation factor SUA5 [Yersinia pestis Pestoides F] gi|149292282|gb|EDM42356.1| hypothetical protein YPE_1047 [Yersinia pestis CA88-4125] gi|152960783|gb|ABS48244.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pseudotuberculosis IP 31758] gi|165913822|gb|EDR32440.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis biovar Orientalis str. IP275] gi|165920677|gb|EDR37925.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165990465|gb|EDR42766.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166207705|gb|EDR52185.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis biovar Antiqua str. B42003004] gi|166961973|gb|EDR57994.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049698|gb|EDR61106.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056233|gb|EDR66011.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169750809|gb|ACA68327.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pseudotuberculosis YPIII] gi|186698535|gb|ACC89164.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pseudotuberculosis PB1/+] gi|229681039|gb|EEO77134.1| predicted RNA-binding protein [Yersinia pestis Nepal516] gi|229688574|gb|EEO80643.1| predicted RNA-binding protein [Yersinia pestis biovar Orientalis str. India 195] gi|229693976|gb|EEO84025.1| predicted RNA-binding protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701991|gb|EEO90012.1| predicted RNA-binding protein [Yersinia pestis Pestoides A] gi|262362130|gb|ACY58851.1| hypothetical protein YPD4_1944 [Yersinia pestis D106004] gi|262365459|gb|ACY62016.1| hypothetical protein YPD8_1331 [Yersinia pestis D182038] gi|270339121|gb|EFA49898.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis KIM D27] gi|294354209|gb|ADE64550.1| hypothetical protein YPZ3_1640 [Yersinia pestis Z176003] gi|320014877|gb|ADV98448.1| putative RNA-binding protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 206 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 44/194 (22%), Positives = 81/194 (41%), Gaps = 6/194 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + L G + PT++ Y L + TA+ R+ I++ + D+S + Sbjct: 17 INQCVDVLRKGGVVVYPTDSGYALGCRLEDKTAMERICRIRQLDGNHNFTLVCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD + L K PG T +L +T ++ L KT RVP L++ Sbjct: 77 TYAYVDNSAFRLIKNNTPGNYTFILK--ATKEVPRRLMNDKRKTIGLRVPSNPIALALLD 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL + G + + ++ K++ LII GG +G + T V + Sbjct: 135 ALGEPLMSTTLMLPGNDFAESDPEEIKENLGKQVDLIIHGG--SLGQQPTTVIDLTDSAP 192 Query: 190 RILRPGGLEIETLK 203 ++R G ++ + Sbjct: 193 EVIREGAGDVTPFR 206 >gi|307824289|ref|ZP_07654515.1| Sua5/YciO/YrdC/YwlC family protein [Methylobacter tundripaludum SV96] gi|307734669|gb|EFO05520.1| Sua5/YciO/YrdC/YwlC family protein [Methylobacter tundripaludum SV96] Length = 207 Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust. Identities = 47/189 (24%), Positives = 81/189 (42%), Gaps = 12/189 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAV---DSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A + + G I PT++ Y +A D + IRR+ ++ + L+C D++ Sbjct: 17 IHRAVDIIRKGGVIVYPTDSSYAIACQIGDKQALDKIRRIRQLDDKHNFT-LVC--KDLT 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKK 126 V + + L K PG T +L+ +T ++ L KT RVP + Sbjct: 74 QVSMFTKISNDAYRLIKALTPGAFTFILE--ATREVPRRLQHPKKKTVGIRVPDHPVAQL 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L++ G PL + G+ + + + + E+ LIID GI I E T + Sbjct: 132 LVQELGEPLFSSTLMLPGEDEALTDPYEIRNKLEHELDLIIDAGI--IEFEQTTIIEFSS 189 Query: 187 KKVRILRPG 195 V I+R G Sbjct: 190 SGVEIIRQG 198 >gi|269215181|ref|ZP_05987872.2| Sua5/YciO/YrdC/YwlC family protein [Neisseria lactamica ATCC 23970] gi|269208121|gb|EEZ74576.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria lactamica ATCC 23970] Length = 250 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 11/114 (9%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +R+ E L+ G + PT++ Y L + A+ R+ I+K + L +D+S + Sbjct: 61 IRQVVEILNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLSELG 120 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-----HPLSTANLKTACFRVP 120 +A +D + K PGP T +L +T D+ HP KT R+P Sbjct: 121 TYAEIDNVQFRQLKAATPGPYTFILQ--ATKDVPARTLHP----KRKTIGLRIP 168 >gi|91786903|ref|YP_547855.1| Sua5/YciO/YrdC/YwlC [Polaromonas sp. JS666] gi|91696128|gb|ABE42957.1| Sua5/YciO/YrdC/YwlC [Polaromonas sp. JS666] Length = 215 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 14/168 (8%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAV---DSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 L++A L G A+PT++ Y L D ++RR+ + + + L+C D+S Sbjct: 17 LKQAVNLLARGGVAAVPTDSSYALVCHLDDKAAADSLRRIRGVDDKHHLT-LLC--RDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKL 127 + +A VD L K PGP T +L+ S LS + KT RVP T + L Sbjct: 74 ELANYARVDNKQFRLLKAATPGPYTFILE-ASKEVPRRLSHPSRKTIGLRVPGHKTLQAL 132 Query: 128 IETYGHPLA-----IPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 +E +G PL +P + + + + I + E+ +ID G Sbjct: 133 LELHGAPLLATTLILPGPDNPPHEPLNDARDI-RDQLEHELAAVIDAG 179 >gi|299771934|ref|YP_003733960.1| Protein yrdC [Acinetobacter sp. DR1] gi|298702022|gb|ADI92587.1| Protein yrdC [Acinetobacter sp. DR1] Length = 189 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 35/63 (55%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ +A E L G +A PTE V+GL D N A +++ E+K+RP +I IS Sbjct: 3 TTSVTEAAECLQQGQVLAYPTEAVWGLGCDPFNEQAFQKILELKQRPIEKGVILLAGHIS 62 Query: 69 MVK 71 V+ Sbjct: 63 QVE 65 >gi|159031016|emb|CAO88719.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 195 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 54/184 (29%), Positives = 81/184 (44%), Gaps = 12/184 (6%) Query: 21 AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS----MVKKHASV 76 +G ++ PT+TV LAV +P ++ KKR PLI + + VK + Sbjct: 15 SGQVVSFPTDTVPALAV---SPPYAALVFAAKKRTFDKPLILMAASAADLWDYVKGNQEE 71 Query: 77 DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLA 136 + + + +WPG LTLVL S L+ + T RVP + I LA Sbjct: 72 REIWRQMTEKYWPGSLTLVLP-ASEKVPKVLNPKDSSTIGIRVPAHAIAREILGRTGVLA 130 Query: 137 IPSANRSGQISITNVKHILSS--SICKEIPLIIDG-GISKIGLESTIVNVQCEKKVRILR 193 SAN SGQ + + I+++ S+ P GI G ST+ QC++ ILR Sbjct: 131 TTSANLSGQEPLLTPEAIMTTFPSVTVLAPTERQAWGIINSGQPSTVARWQCQRW-DILR 189 Query: 194 PGGL 197 G + Sbjct: 190 QGAV 193 >gi|52425092|ref|YP_088229.1| SUA5 protein [Mannheimia succiniciproducens MBEL55E] gi|52307144|gb|AAU37644.1| SUA5 protein [Mannheimia succiniciproducens MBEL55E] Length = 207 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 53/193 (27%), Positives = 84/193 (43%), Gaps = 19/193 (9%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + L G I PT++ Y L + A+ R+ +I+ P + SD+S + Sbjct: 17 INQAVDILRNGGVIVYPTDSGYALGCMIGDKRAMDRIVQIRHLPEGHNFTLVCSDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 ++ V + L K PG T +L +T ++ L T+ KT RVP L+ Sbjct: 77 TYSLVTNTAYRLIKNNTPGRYTFILT--ATKELPRRLMTSKRKTIGIRVPDNQIALDLLR 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSS-------ICKEIPLIIDGGISKIGLESTIVN 182 T G P+ S + + N +HI S + ++ LII GG +G E T V Sbjct: 135 TLGEPIL------SCSLMLPNEEHITQSDPEEIRDRLEHQVDLIIHGGY--LGQEPTTVV 186 Query: 183 VQCEKKVRILRPG 195 E+ ILR G Sbjct: 187 DLTEETPVILREG 199 >gi|149638532|ref|XP_001511974.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus] Length = 148 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 14/99 (14%) Query: 106 PLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP 164 PLS+ + + R+P F ++L++ + PLA+ SAN S Q S VK + ++ Sbjct: 31 PLSSGS-QLVGIRIPRHAFMRQLVQKFSGPLALTSANVSSQASSLTVKEF--RDLWPQLS 87 Query: 165 LIIDGGISKIG--------LESTIVNVQCEKKVRILRPG 195 LI+DGG IG L ST+V++ K ++RPG Sbjct: 88 LIVDGG--PIGDVQSPECRLGSTVVDLSVPGKFSVIRPG 124 >gi|145596153|ref|YP_001160450.1| Sua5/YciO/YrdC/YwlC family protein [Salinispora tropica CNB-440] gi|145305490|gb|ABP56072.1| translation factor SUA5 [Salinispora tropica CNB-440] Length = 236 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 42/182 (23%), Positives = 87/182 (47%), Gaps = 4/182 (2%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 + +PT+TVYG+ D+ P A++ L + K + P + S ++ S+ + L Sbjct: 50 VVLPTDTVYGIGADAFTPHAVKALLDAKGGQPVPPPVLIGSRHTLDGLVFSLPSAARDLV 109 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSG 144 + FWPG LT+V++ S + L + + A R+P + P+A+ SAN +G Sbjct: 110 EAFWPGALTIVVE-HSPSLRWDLGETSGRVAV-RMPLHPVALEVLRETGPMAVASANTAG 167 Query: 145 QISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKR 204 + T + + + ++ G + + STIV++ +++R G ++++ L+ Sbjct: 168 LPAATTAEAA-RGQLAYSVRTYLEAGPAVDPVPSTIVDLTGAVP-QLIRAGAIDLDRLRD 225 Query: 205 AI 206 + Sbjct: 226 VV 227 >gi|294790664|ref|ZP_06755822.1| Sua5/YciO/YrdC/YwlC family protein [Scardovia inopinata F0304] gi|294458561|gb|EFG26914.1| Sua5/YciO/YrdC/YwlC family protein [Scardovia inopinata F0304] Length = 322 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 5/105 (4%) Query: 2 QIMSITDSNALRKA----CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 +I+ + D ++L K E + +G IPT+TVYGL D + +A++ ++ K RP Sbjct: 4 KILPLYDGDSLEKTVQTVTEAIRSGKTAVIPTDTVYGLVADPLSVSAVQGIFRAKHRPPE 63 Query: 58 NPLICHVSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLST 101 + S+ +K + P + L +F PG L LV ++ST Sbjct: 64 KTVQILCSNPDQARKLGLIIPHIYEQLLDIFPPGSLCLVCSVIST 108 >gi|149190890|ref|ZP_01869153.1| hypothetical protein VSAK1_01032 [Vibrio shilonii AK1] gi|148835245|gb|EDL52219.1| hypothetical protein VSAK1_01032 [Vibrio shilonii AK1] Length = 206 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 45/186 (24%), Positives = 76/186 (40%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + G I PT++ Y L N A+ R+ +I++ + D+S + Sbjct: 17 INQAVAIVRNGGVIIYPTDSGYALGCQLENKQALERICQIRRLDDKHNFTLLCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD + L K PGP T + T ++ L KT RVP L+E Sbjct: 77 LYARVDNTAFRLLKNNTPGPYTFIFK--GTKEVPRRLMNPKRKTIGIRVPDNQIALDLLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL S G + + + + I++GG +G + T V + + Sbjct: 135 ALGEPLMSTSLILPGNEVTESDPEEIRDQLEHAVDCILNGGY--LGEQPTTVIDFSDDEA 192 Query: 190 RILRPG 195 ++LR G Sbjct: 193 KVLRTG 198 >gi|308187010|ref|YP_003931141.1| hypothetical protein Pvag_1502 [Pantoea vagans C9-1] gi|308057520|gb|ADO09692.1| Uncharacterized protein yciO [Pantoea vagans C9-1] Length = 206 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 76/186 (40%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A ++L+ G I PT++ Y L A+ R+ I++ + D+S + Sbjct: 17 INQAVDYLNKGSVIVYPTDSGYALGCRLEEKGAMERICRIRQLDGHHNFTLMCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 ++ V + L K PG T +L +T ++ L KT RVP L+E Sbjct: 77 VYSQVGNSAFRLLKNNTPGNYTFILK--ATKEVPRRLMNEKRKTIGLRVPSNPVALALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+ S G + + SI K + LIIDGG +G + T V Sbjct: 135 ALNQPMMSTSLILPGNDFTESDPEEIQHSIGKLVDLIIDGGT--LGQQPTTVVDLTTDSP 192 Query: 190 RILRPG 195 I+R G Sbjct: 193 EIVREG 198 >gi|325124149|gb|ADY83672.1| putative SUA5/YciO/YrdC/YwlC family protein [Acinetobacter calcoaceticus PHEA-2] Length = 189 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 35/63 (55%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ +A E L G +A PTE V+GL D N A +++ E+K+RP +I IS Sbjct: 3 TTSVTEAAECLQQGQVLAYPTEAVWGLGCDPFNEQAFQKILELKQRPIEKGVILLAGHIS 62 Query: 69 MVK 71 V+ Sbjct: 63 QVE 65 >gi|291617617|ref|YP_003520359.1| YciO [Pantoea ananatis LMG 20103] gi|291152647|gb|ADD77231.1| YciO [Pantoea ananatis LMG 20103] gi|327394045|dbj|BAK11467.1| protein YciO [Pantoea ananatis AJ13355] Length = 206 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 72/172 (41%), Gaps = 6/172 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E+L+ G I PT++ Y L A+ R+ I++ + D+S + Sbjct: 17 INQAVEYLNKGGVIVYPTDSGYALGCRLEEKGAMERICRIRQLDGHHNFTLMCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 ++ V + L K PG T +L +T ++ L KT RVP L+E Sbjct: 77 VYSQVGNSAFRLLKNNTPGNYTFILK--ATKEVPRRLMNDKRKTIGLRVPSNPVALALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 P+ S G + + SI K + LIIDGG +G + T V Sbjct: 135 ALNEPMMSTSLILPGNDFTESDPEDIQHSIGKLVDLIIDGG--TLGQQPTTV 184 >gi|169632175|ref|YP_001705911.1| putative ribosome maturation factor (dsRNA-binding protein) (RimN) [Acinetobacter baumannii SDF] gi|169797636|ref|YP_001715429.1| putative ribosome maturation factor (dsRNA-binding protein) (RimN) [Acinetobacter baumannii AYE] gi|184156507|ref|YP_001844846.1| putative translation factor (SUA5) [Acinetobacter baumannii ACICU] gi|213155570|ref|YP_002317615.1| protein YrdC [Acinetobacter baumannii AB0057] gi|215484990|ref|YP_002327231.1| Protein yrdC [Acinetobacter baumannii AB307-0294] gi|260557579|ref|ZP_05829793.1| yrdC [Acinetobacter baumannii ATCC 19606] gi|301346865|ref|ZP_07227606.1| Protein yrdC [Acinetobacter baumannii AB056] gi|301512293|ref|ZP_07237530.1| Protein yrdC [Acinetobacter baumannii AB058] gi|301594507|ref|ZP_07239515.1| Protein yrdC [Acinetobacter baumannii AB059] gi|332852662|ref|ZP_08434316.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter baumannii 6013150] gi|332869378|ref|ZP_08438756.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter baumannii 6013113] gi|332875641|ref|ZP_08443453.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter baumannii 6014059] gi|212277661|sp|B2I111|RIMN_ACIBC RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|212277662|sp|B0VNL3|RIMN_ACIBS RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|212277670|sp|B0VCB7|RIMN_ACIBY RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|212277730|sp|A3M154|RIMN_ACIBT RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|169150563|emb|CAM88472.1| putative ribosome maturation factor (dsRNA-binding protein) (RimN) [Acinetobacter baumannii AYE] gi|169150967|emb|CAO99583.1| putative ribosome maturation factor (dsRNA-binding protein) (RimN) [Acinetobacter baumannii] gi|183208101|gb|ACC55499.1| putative translation factor (SUA5) [Acinetobacter baumannii ACICU] gi|193076053|gb|ABO10648.2| putative Sua5/YciO/YrdC/YwlC family protein [Acinetobacter baumannii ATCC 17978] gi|213054730|gb|ACJ39632.1| protein YrdC [Acinetobacter baumannii AB0057] gi|213988323|gb|ACJ58622.1| Protein yrdC [Acinetobacter baumannii AB307-0294] gi|260408752|gb|EEX02056.1| yrdC [Acinetobacter baumannii ATCC 19606] gi|322506375|gb|ADX01829.1| Putative ribosome maturation factor [Acinetobacter baumannii 1656-2] gi|323516243|gb|ADX90624.1| putative translation factor (SUA5) [Acinetobacter baumannii TCDC-AB0715] gi|332729130|gb|EGJ60477.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter baumannii 6013150] gi|332732796|gb|EGJ64012.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter baumannii 6013113] gi|332736214|gb|EGJ67229.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter baumannii 6014059] Length = 189 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 35/63 (55%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ +A E L G +A PTE V+GL D N A +++ E+K+RP +I IS Sbjct: 3 TTSVTEAAECLQQGQVLAYPTEAVWGLGCDPFNEQAFQKILELKQRPIEKGVILLAGHIS 62 Query: 69 MVK 71 V+ Sbjct: 63 QVE 65 >gi|330881429|gb|EGH15578.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 209 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 8/128 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E + AG + PT++ Y L + +AI R+ +++ + D+S + Sbjct: 17 IKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLSQLG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127 A VD + K PGP T +L+ +HP +T RVP + L Sbjct: 77 LFAKVDTGAFRALKAHTPGPYTFILNATREVPRLVLHP----KRRTISLRVPSHPIAQAL 132 Query: 128 IETYGHPL 135 +E G PL Sbjct: 133 LEQLGEPL 140 >gi|312971455|ref|ZP_07785630.1| yrdC domain protein [Escherichia coli 1827-70] gi|310336052|gb|EFQ01252.1| yrdC domain protein [Escherichia coli 1827-70] gi|323187498|gb|EFZ72807.1| yrdC domain protein [Escherichia coli RN587/1] Length = 183 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 38/148 (25%), Positives = 63/148 (42%), Gaps = 4/148 (2%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 I PT++ Y L + A+ R+ I++ P + D+S + ++ VD ++ L Sbjct: 7 IVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELSTYSFVDNVAFRLM 66 Query: 85 KLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142 K PG T +L T ++ L KT RVP + L+E G P+ S Sbjct: 67 KNNTPGNYTFILK--GTKEVPRRLLQEKRKTIGMRVPSNPIAQALLEALGEPMLSTSLML 124 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGG 170 G + + + K++ LII GG Sbjct: 125 PGSEFTESDPEEIKDRLEKQVDLIIHGG 152 >gi|239503034|ref|ZP_04662344.1| Protein yrdC [Acinetobacter baumannii AB900] Length = 189 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 35/63 (55%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ +A E L G +A PTE V+GL D N A +++ E+K+RP +I IS Sbjct: 3 TTSVTEAAECLQQGQVLAYPTEAVWGLGCDPFNEQAFQKILELKQRPIEKGVILLAGHIS 62 Query: 69 MVK 71 V+ Sbjct: 63 QVE 65 >gi|602960|gb|AAB59987.1| ORF1 [Escherichia coli str. K-12 substr. W3110] Length = 183 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 38/148 (25%), Positives = 63/148 (42%), Gaps = 4/148 (2%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 I PT++ Y L + A+ R+ I++ P + D+S + ++ VD ++ L Sbjct: 7 IVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELSTYSFVDNVAFRLM 66 Query: 85 KLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142 K PG T +L T ++ L KT RVP + L+E G P+ S Sbjct: 67 KNNTPGNYTFILK--GTKEVPRRLLQEKRKTIGMRVPSNPIAQALLEALGEPMLSTSLML 124 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGG 170 G + + + K++ LII GG Sbjct: 125 PGSEFTESDPEEIKDRLEKQVDLIIHGG 152 >gi|269959634|ref|ZP_06174014.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269835557|gb|EEZ89636.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 206 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 44/186 (23%), Positives = 77/186 (41%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + +G + PT++ Y L N A+ R+ +I++ + D+S + Sbjct: 17 INQAVAIIRSGGVVVYPTDSGYALGCQLENKQALERICQIRRLDDKHNFTLLCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD + L K PGP T + T ++ L A KT RVP L+E Sbjct: 77 LYARVDNAAFRLLKNNTPGPYTFIFK--GTKEVPRRLMNAKRKTIGIRVPDNRIALDLLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G P+ S G + + + + +I++GG +G + T V E + Sbjct: 135 ALGEPMMSTSLILPGSDVTESDPEDIRDKLEHAVDVILNGGY--LGEQPTTVIDFSEGEA 192 Query: 190 RILRPG 195 + R G Sbjct: 193 VVARVG 198 >gi|308050243|ref|YP_003913809.1| translation factor SUA5 [Ferrimonas balearica DSM 9799] gi|307632433|gb|ADN76735.1| translation factor SUA5 [Ferrimonas balearica DSM 9799] Length = 206 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 47/189 (24%), Positives = 78/189 (41%), Gaps = 6/189 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S + +A + G I PT++ Y L + +A+ R+ I++ + D+S Sbjct: 14 SRLINQAVATIHKGGVIVYPTDSGYALGCHIGDKSALERICRIRRLNEHHNFTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKK 126 + +A VD + L K PGP T + T ++ L A KT RVP Sbjct: 74 ELSLYARVDNAAFRLLKNNTPGPYTFIFK--GTKEVPRRLLNAKRKTIGIRVPDNNIALA 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+E G P+ S G+ + + + ++ LI+ GG +G T V E Sbjct: 132 LLEALGEPMMSTSLILPGETLAESDPDDIRDKLEHQVDLILHGGF--LGESPTTVVDFSE 189 Query: 187 KKVRILRPG 195 + I+R G Sbjct: 190 GEGEIVRVG 198 >gi|148652264|ref|YP_001279357.1| Sua5/YciO/YrdC/YwlC family protein [Psychrobacter sp. PRwf-1] gi|148571348|gb|ABQ93407.1| translation factor SUA5 [Psychrobacter sp. PRwf-1] Length = 206 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 4/113 (3%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 I PT+T Y + AI +L I++ + D+S + +A+VD L Sbjct: 29 IVYPTDTSYAFGCKIGSKEAIEKLRLIRQLDDKHQFTLLCRDLSEIATYATVDNQQFKLL 88 Query: 85 KLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIETYGHPL 135 K P P+T +LD +T D+ LS KT RVP + L+E G P+ Sbjct: 89 KASTPAPITFILD--ATKDVPKKLSHPKKKTIGIRVPSNPIAQMLLEAMGEPI 139 >gi|304396084|ref|ZP_07377966.1| Sua5/YciO/YrdC/YwlC family protein [Pantoea sp. aB] gi|304356453|gb|EFM20818.1| Sua5/YciO/YrdC/YwlC family protein [Pantoea sp. aB] Length = 206 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 76/186 (40%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A ++L+ G I PT++ Y L A+ R+ I++ + D+S + Sbjct: 17 INQAVDYLNKGSVIVYPTDSGYALGCRLEEKGAMERICRIRQLDGHHNFTLMCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 ++ V + L K PG T +L +T ++ L KT RVP L+E Sbjct: 77 VYSQVGNSAFRLLKNNTPGNYTFILK--ATKEVPRRLMNEKRKTIGLRVPSNPVALALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+ S G + + SI K + LIIDGG +G + T V Sbjct: 135 ALNQPMMSTSLILPGNDFTESDPEEIQHSIGKLVDLIIDGGT--LGQQPTTVVDLTTDAP 192 Query: 190 RILRPG 195 I+R G Sbjct: 193 EIVREG 198 >gi|261365262|ref|ZP_05978145.1| protein RimN [Neisseria mucosa ATCC 25996] gi|288566351|gb|EFC87911.1| protein RimN [Neisseria mucosa ATCC 25996] Length = 189 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 64/145 (44%), Gaps = 9/145 (6%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC--- 62 I ++ L K L G +A PTE+ YG+ P A+ RL +KKRP +I Sbjct: 6 ILSASTLCKLQSHLKKGGLVAYPTESCYGIGCIPTLPKALNRLIHLKKRPQHKGMIVIGN 65 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPC 121 + + + K +S + + + + WP P T +L + D+ P L RVP Sbjct: 66 QLEQLQPLLKRSSENIQT--MLRNEWPAPKTFLLP--AAADVLPALRGKGRSKLAVRVPA 121 Query: 122 -GFTKKLIETYGHPLAIPSANRSGQ 145 ++L + PL S NR+G+ Sbjct: 122 HAGARRLCQALKTPLVSTSCNRAGK 146 >gi|291515259|emb|CBK64469.1| Sua5/YciO/YrdC/YwlC family protein [Alistipes shahii WAL 8301] Length = 193 Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust. Identities = 33/143 (23%), Positives = 68/143 (47%), Gaps = 5/143 (3%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 +A + AG I PT+TV+GL D+ + A+ R+Y +K+ ++ + M+ ++ Sbjct: 13 EAVRTMRAGGIILYPTDTVWGLGCDATSAAAVERIYRLKRSGNKKSMLVLCASADMIVRY 72 Query: 74 ASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETY 131 + P ++ + +L PLT +L + + T R+P F ++++ Sbjct: 73 VNKAPGIAFEVMELA-TSPLTAILP--GAAGLAENLIPDEGTLGVRIPDHEFCRRMLRAL 129 Query: 132 GHPLAIPSANRSGQISITNVKHI 154 G P+ SAN SG+ + ++ + Sbjct: 130 GRPIVSTSANISGEATPVGLQDV 152 >gi|320323237|gb|EFW79325.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. glycinea str. B076] gi|320329732|gb|EFW85721.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. glycinea str. race 4] Length = 222 Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust. Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 8/128 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E + AG + PT++ Y L + +AI R+ +++ + D+S + Sbjct: 30 IKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLSQLG 89 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127 A VD + K PGP T +L+ +HP +T RVP + L Sbjct: 90 LFAKVDTGAFRALKAHTPGPYTFILNATREVPRLVLHP----KRRTISLRVPSHPIAQAL 145 Query: 128 IETYGHPL 135 +E G PL Sbjct: 146 LEQLGEPL 153 >gi|297626391|ref|YP_003688154.1| Sua5_yciO_yrdC [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922156|emb|CBL56724.1| Sua5_yciO_yrdC [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 205 Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust. Identities = 43/190 (22%), Positives = 82/190 (43%), Gaps = 6/190 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ + + L G IA PT++ + L N I + I+ + L VS+ + Sbjct: 14 ARSIHQVADLLREGAVIAYPTDSGFALGTLFGNKEGIDTMRRIRDLDERHHLSVVVSEFA 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-KL 127 + ++ +D K PGP T + L +T ++ KT RVP T L Sbjct: 74 QLGRYVDMDNREFRAIKASTPGPFTFI--LRATREVPRSMQHPNKTVGVRVPDHVTALAL 131 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIVNVQCE 186 ++ PL + GQ + + ++ +I ++D G +G + +T+V++ E Sbjct: 132 LDELDEPLVSSTLILPGQEEPMSEGWQIKEALDNDIAAVLDSG--DVGHVPTTVVDLTGE 189 Query: 187 KKVRILRPGG 196 + V + R GG Sbjct: 190 EPVVVRRGGG 199 >gi|260789486|ref|XP_002589777.1| hypothetical protein BRAFLDRAFT_90450 [Branchiostoma floridae] gi|229274960|gb|EEN45788.1| hypothetical protein BRAFLDRAFT_90450 [Branchiostoma floridae] Length = 145 Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 13/122 (10%) Query: 81 LHLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAI 137 + L + PGP+T+V+ + T+++P + RVP F ++L ET P+A+ Sbjct: 1 MELLQDLLPGPVTVVMQRTAALNTNLNP----STDLVGIRVPQHKFMRQLAETCMEPIAL 56 Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGG----ISKIGLESTIVNVQCEKKVRILR 193 SAN S + +++ ++ ++ L++DGG + ST+V++ E + R+LR Sbjct: 57 TSANTSAAGNTIDIQEF--ENLWPQLDLVLDGGRLESTQAVREGSTVVDLSVEGQFRVLR 114 Query: 194 PG 195 G Sbjct: 115 VG 116 >gi|253688396|ref|YP_003017586.1| Sua5/YciO/YrdC/YwlC family protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251754974|gb|ACT13050.1| Sua5/YciO/YrdC/YwlC family protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 206 Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 76/186 (40%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + ++ EFL G I PT++ Y L A+ R+ I+ + + D+S + Sbjct: 17 INQSVEFLHKGGVIVYPTDSGYALGCMLGEKNALERICRIRDLGSDHNFTLMCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD + L K PG T +L +T ++ L KT RVP +L+ Sbjct: 77 TYAHVDNAAFRLIKNNTPGNYTFILK--ATKEVPRRLMNEKRKTIGLRVPSNPIALELLA 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 PL + G + + + K++ LII GG +G + T V E Sbjct: 135 ALNEPLMSTTLMLPGNDFAESDPEEIQEILGKQVDLIIHGG--SLGQQPTTVIDLTESAP 192 Query: 190 RILRPG 195 R+ R G Sbjct: 193 RVAREG 198 >gi|304310659|ref|YP_003810257.1| Putative translation factor (SUA5) [gamma proteobacterium HdN1] gi|301796392|emb|CBL44600.1| Putative translation factor (SUA5) [gamma proteobacterium HdN1] Length = 211 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 43/177 (24%), Positives = 77/177 (43%), Gaps = 11/177 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A L G I PT+ Y N +A+ R+ +I++ + + ++S + Sbjct: 17 IQQAVNILRDGGVIVYPTDAAYAFGCTVGNKSALERIVQIRQLGSKHNFTIACHNLSELA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127 +A VD L K PGP T +L + +HP KT R+P L Sbjct: 77 TYARVDNQVFRLLKNNTPGPYTFILAATAEVPRRLMHP----KRKTVGLRIPDNKIALAL 132 Query: 128 IETYGHPLAIPSANRSGQIS-ITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 +E G PL + + + + + IL + + I L+IDGG + +T+V++ Sbjct: 133 LEALGEPLMTTTLIMPNESEPLVDPEEIL-ELLSRRIELVIDGGWGETS-TTTVVDL 187 >gi|74317545|ref|YP_315285.1| putative translation factor Sua5 [Thiobacillus denitrificans ATCC 25259] gi|74057040|gb|AAZ97480.1| putative translation factor Sua5 [Thiobacillus denitrificans ATCC 25259] Length = 207 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 42/177 (23%), Positives = 74/177 (41%), Gaps = 5/177 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++ + L G I PT++ Y L + A RL ++ + L D+S + Sbjct: 17 IQQTVDILKRGGVIVYPTDSCYALGCHIGDKEAAMRLLSVRGLDTGHDLTLVCRDLSELG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 ++A VD L K PGP T +L T ++ L T RVP + L+E Sbjct: 77 RYAQVDNAQFRLLKAHTPGPYTFILR--GTREVPRRLLHKRHDTIGLRVPAHPLVQALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 G P+ + G+ + + ++ L+IDGG + +T+V++ E Sbjct: 135 GLGEPILSSTLLLYGEDVPLTEPWEIRERLEHQVDLVIDGGACGL-TPTTVVDLTAE 190 >gi|109896360|ref|YP_659615.1| SUA5/yciO/yrdC-like [Pseudoalteromonas atlantica T6c] gi|123065188|sp|Q15ZX7|RIMN_PSEA6 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|109698641|gb|ABG38561.1| translation factor SUA5 [Pseudoalteromonas atlantica T6c] Length = 187 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 70/161 (43%), Gaps = 20/161 (12%) Query: 21 AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80 AG A PTE V+GL D N A+ +L +K+R LI + S + + VD + Sbjct: 16 AGKVFAYPTEAVFGLGCDPDNEQAVNKLLALKQRDVSKGLILVGDNYSQLLPY--VDDSA 73 Query: 81 LHLAK---LF--WPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCG-FTKKLIETYGH 133 + + K +F WPGP+T LL + P T + RV K L + Sbjct: 74 IKMTKRTEIFSSWPGPITW---LLPKSKTAPSWVTGESEFIAVRVSAHPLIKDLCQRANK 130 Query: 134 PLAIPSANRSGQ---ISITNVKHILSSSICKEIPLIIDGGI 171 PL SAN +G +S V S+ + ++IDG + Sbjct: 131 PLVSTSANTAGHPPALSADEVTSYFSNQV-----ILIDGSL 166 >gi|262281298|ref|ZP_06059079.1| DsRNA-binding protein [Acinetobacter calcoaceticus RUH2202] gi|262257124|gb|EEY75861.1| DsRNA-binding protein [Acinetobacter calcoaceticus RUH2202] Length = 189 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 35/63 (55%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ +A E L G +A PTE V+GL D N A +++ E+K+RP +I IS Sbjct: 3 TTSVTEAAESLHQGQVLAYPTEAVWGLGCDPFNEQAFQKILELKQRPIEKGVILLAGHIS 62 Query: 69 MVK 71 V+ Sbjct: 63 QVE 65 >gi|121608594|ref|YP_996401.1| Sua5/YciO/YrdC/YwlC family protein [Verminephrobacter eiseniae EF01-2] gi|121553234|gb|ABM57383.1| Sua5/YciO/YrdC/YwlC family protein [Verminephrobacter eiseniae EF01-2] Length = 211 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 3/110 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 LR+A L G +A+PT++ Y LA + A RL I++ + L D+S + Sbjct: 17 LRQAAALLRQGGIVAVPTDSSYALACHLDDKDAAERLRRIRQVDDKHHLTLLCRDLSELA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP 120 A VD L +L PGP T +L+ +T ++ +S KT RVP Sbjct: 77 SCARVDNRQYRLLRLGTPGPYTFILE--ATREVPRRVSHPARKTLGLRVP 124 >gi|332304414|ref|YP_004432265.1| SUA5/yciO/yrdC domain protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332171743|gb|AEE20997.1| SUA5/yciO/yrdC domain protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 187 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 4/83 (4%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 +FL AG A PTE V+GL D N A+ +L +K+R LI + S + + + Sbjct: 13 DFL-AGKVFAYPTEAVFGLGCDPDNEQAVSKLLLLKERDVSKGLILVADNYSQLLPYVND 71 Query: 77 DPLSL-HLAKLF--WPGPLTLVL 96 D + + ++F WPGP+T +L Sbjct: 72 DAIKMTKRTEIFSSWPGPVTWLL 94 >gi|238786121|ref|ZP_04630076.1| hypothetical protein yberc0001_36560 [Yersinia bercovieri ATCC 43970] gi|238712973|gb|EEQ05030.1| hypothetical protein yberc0001_36560 [Yersinia bercovieri ATCC 43970] Length = 178 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 6/173 (3%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 + PT++ Y L + TA+ R+ I++ + D+S + +A VD + L Sbjct: 2 VVYPTDSGYALGCRLEDKTAMERICRIRQLDGNHNFTLVCRDLSELSTYAYVDNSAFRLI 61 Query: 85 KLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142 K PG T +L +T ++ L KT RVP L++ G PL + Sbjct: 62 KNNTPGNYTFILK--ATKEVPRRLMNDKRKTIGLRVPSNPIALALLDVLGEPLMSTTLML 119 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 G + + + K++ LII GG +G + T V + V ++R G Sbjct: 120 PGNDFAESDPEEIKEHLGKQVDLIIHGG--SLGQQPTTVIDLTDSSVAVIREG 170 >gi|281207352|gb|EFA81535.1| brix domain-containing protein [Polysphondylium pallidum PN500] Length = 592 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 2/101 (1%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 I+ D + +A + +G ++ PTETVYGL ++ + A+ ++ K RP +P+I Sbjct: 88 IVDSLDDQVMLEAANKIKSGGLVSFPTETVYGLGANAFDTDAVLSIFTAKGRPLTDPVIV 147 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD 103 H+ + VK+H L + P +L + T D Sbjct: 148 HLQN--SVKQHQQGQEAPGQLLTHYAPDIQAYILKDIITDD 186 >gi|77456248|ref|YP_345753.1| SUA5/yciO/yrdC-like [Pseudomonas fluorescens Pf0-1] gi|123606494|sp|Q3KKE2|RIMN_PSEPF RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|77380251|gb|ABA71764.1| translation factor SUA5 [Pseudomonas fluorescens Pf0-1] Length = 185 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 62/145 (42%), Gaps = 13/145 (8%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + +S +++A + AG IA PTE V+GL D N A+ RL IK R LI Sbjct: 1 MVNSWRVQQAAREIRAGAVIAYPTEAVWGLGCDPWNEEAVDRLLAIKNRSVDKGLILVAD 60 Query: 66 DISMVKKHASVDPLSL--HLAKLFWPGPLTLVL---DLL--STTDIHPLSTANLKTA--- 115 +I P +A WPGP T ++ +LL T +H T L+ + Sbjct: 61 NIRQFDFLFEDFPQDWIDRMAST-WPGPNTWLVPHQNLLPEWVTGVH--DTVALRVSDHP 117 Query: 116 CFRVPCGFTKKLIETYGHPLAIPSA 140 R C LI T +P P+A Sbjct: 118 QVRDLCSLVGPLISTSANPQGRPAA 142 >gi|331012312|gb|EGH92368.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 209 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 8/128 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E + AG + PT++ Y L + +AI R+ +++ + D+S + Sbjct: 17 IKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLSQLG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127 A VD + K PGP T +L+ +HP +T RVP + L Sbjct: 77 LFAKVDTGAFRALKAHTPGPYTFILNATREVPRLVLHP----KRRTIGLRVPSHPIAQAL 132 Query: 128 IETYGHPL 135 +E G PL Sbjct: 133 LEQLGEPL 140 >gi|330866210|gb|EGH00919.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 209 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 8/128 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E + AG + PT++ Y L + +AI R+ +++ + D+S + Sbjct: 17 IKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLSQLG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127 A VD + K PGP T +L+ +HP +T RVP + L Sbjct: 77 LFAKVDTGAFRALKAHTPGPYTFILNATREVPRLVLHP----KRRTIGLRVPSHPIAQAL 132 Query: 128 IETYGHPL 135 +E G PL Sbjct: 133 LEQLGEPL 140 >gi|116075870|ref|ZP_01473129.1| hypothetical protein RS9916_40431 [Synechococcus sp. RS9916] gi|116067185|gb|EAU72940.1| hypothetical protein RS9916_40431 [Synechococcus sp. RS9916] Length = 217 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 56/202 (27%), Positives = 93/202 (46%), Gaps = 26/202 (12%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + ++A+ + AGL +PT+T+ L P R+++ +K+RP+ PLI + Sbjct: 15 VCSTDAMARCLLAGGAGL---MPTDTLPALIA---LPGHARQIWTLKQRPSEKPLILMAA 68 Query: 66 DISMV------KKHASVDPLSLHLAKLFWPGPLTLVL----DLLSTTDIHPLSTANLKTA 115 + + + A+ PL A+L WPG LT+VL D L+ + + L+ T Sbjct: 69 NAEALLALVRPEAQAAARPL----AQLHWPGALTMVLPIAGDALAQSWLRALNP-GATTL 123 Query: 116 CFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI-SK 173 RVP C ++L+ G PLA SAN SG + + ++PL+ + Sbjct: 124 GLRVPACAQARQLLARTG-PLATTSANPSGDAAALTAAQ--AHCYFPDLPLLGPTPWPAP 180 Query: 174 IGLESTIVNVQCEKKVRILRPG 195 GL ST++ Q + LR G Sbjct: 181 QGLASTVLAWQDSGSWQTLRAG 202 >gi|330972285|gb|EGH72351.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. aceris str. M302273PT] Length = 209 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 8/128 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E + AG + PT++ Y L + +AI R+ +++ + D+S + Sbjct: 17 IKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLSQLG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127 A VD + K PGP T +L+ +HP +T RVP + L Sbjct: 77 LFAKVDTGAFRALKAHTPGPYTFILNATREVPRLVLHP----KRRTIGLRVPSHPIAQAL 132 Query: 128 IETYGHPL 135 +E G PL Sbjct: 133 LEQLGEPL 140 >gi|71738162|ref|YP_275690.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558715|gb|AAZ37926.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas syringae pv. phaseolicola 1448A] Length = 209 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 8/128 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E + AG + PT++ Y L + +AI R+ +++ + D+S + Sbjct: 17 IKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLSQLG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127 A VD + K PGP T +L+ +HP +T RVP + L Sbjct: 77 LFAKVDTGAFRALKAHTPGPYTFILNATREVPRLVLHP----KRRTIGLRVPSHPIAQAL 132 Query: 128 IETYGHPL 135 +E G PL Sbjct: 133 LEQLGEPL 140 >gi|289677279|ref|ZP_06498169.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. syringae FF5] Length = 222 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 8/128 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E + AG + PT++ Y L + +AI R+ +++ + D+S + Sbjct: 30 IKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLSQLG 89 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127 A VD + K PGP T +L+ +HP +T RVP + L Sbjct: 90 LFAKVDTGAFRALKAHTPGPYTFILNATREVPRLVLHP----KRRTIGLRVPSHPIAQAL 145 Query: 128 IETYGHPL 135 +E G PL Sbjct: 146 LEQLGEPL 153 >gi|298488128|ref|ZP_07006165.1| predicted RNA-binding protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157407|gb|EFH98490.1| predicted RNA-binding protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330989191|gb|EGH87294.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas syringae pv. lachrymans str. M301315] Length = 209 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 8/128 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E + AG + PT++ Y L + +AI R+ +++ + D+S + Sbjct: 17 IKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLSQLG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127 A VD + K PGP T +L+ +HP +T RVP + L Sbjct: 77 LFAKVDTGAFRALKAHTPGPYTFILNATREVPRLVLHP----KRRTIGLRVPSHPIAQAL 132 Query: 128 IETYGHPL 135 +E G PL Sbjct: 133 LEQLGEPL 140 >gi|260598146|ref|YP_003210717.1| hypothetical protein CTU_23540 [Cronobacter turicensis z3032] gi|260217323|emb|CBA31309.1| Uncharacterized protein yciO [Cronobacter turicensis z3032] Length = 206 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 46/186 (24%), Positives = 77/186 (41%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E + G I PT++ Y L + A+ R+ I+ P + D+S + Sbjct: 17 IKQAVEIVRKGGVIVYPTDSGYALGCKLEDKGAMERICRIRDLPDGHNFTLMCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 ++ VD ++ L K PG T +L T ++ L KT RVP L+E Sbjct: 77 TYSYVDNVAFRLIKNNTPGNYTFILK--GTKEVPRRLLQEKRKTIGLRVPSNPIALALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+ S G + + + K++ LII GG +G + T V + Sbjct: 135 ALDEPMLSTSLMLPGSDFTESDPDEIKDRLEKQVDLIIHGGY--LGQQPTTVVDLTDDAP 192 Query: 190 RILRPG 195 +LR G Sbjct: 193 VVLREG 198 >gi|260554284|ref|ZP_05826534.1| yrdC [Acinetobacter sp. RUH2624] gi|260404593|gb|EEW98113.1| yrdC [Acinetobacter sp. RUH2624] Length = 189 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 36/63 (57%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ +A E L G +A PTE V+GL D N A +++ ++K+RP +I S IS Sbjct: 3 TTSVTEAAECLQQGQVLAYPTEAVWGLGCDPFNEQAFQKILKLKQRPIEKGVILLASHIS 62 Query: 69 MVK 71 V+ Sbjct: 63 QVE 65 >gi|255065428|ref|ZP_05317283.1| protein RimN [Neisseria sicca ATCC 29256] gi|255050253|gb|EET45717.1| protein RimN [Neisseria sicca ATCC 29256] Length = 199 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 46/190 (24%), Positives = 82/190 (43%), Gaps = 11/190 (5%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC--- 62 I ++ LRK L G +A PTE+ YG+ P A+ RL +KKRP +I Sbjct: 16 ILSASTLRKLQSHLKKGGLVAYPTESCYGIGCIPTLPKALNRLIHLKKRPQHKGMIVIGN 75 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPC 121 + + + K +S + + + + WP P T +L + D+ P L RVP Sbjct: 76 QLEQLQPLLKRSSENIQT--MLRNEWPAPKTFLLP--AAADVLPALRGKGRSKLAVRVPA 131 Query: 122 -GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 ++L L S NR+G+ + + + +++ ++ G I K S I Sbjct: 132 HAGARRLCRALKTSLVSTSCNRAGKRACKTEREV-RRQFGRDV-WVVGGLIGKQKSPSQI 189 Query: 181 VNVQCEKKVR 190 ++ + ++R Sbjct: 190 IDGETGVRLR 199 >gi|78778710|ref|YP_396822.1| hypothetical protein PMT9312_0325 [Prochlorococcus marinus str. MIT 9312] gi|78712209|gb|ABB49386.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT 9312] Length = 193 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 57/206 (27%), Positives = 89/206 (43%), Gaps = 21/206 (10%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 M++ DS + A + L +GLPI PT+T+ + P +Y+ KKR PLI Sbjct: 1 MNLVDS---KSALKTLTSGLPIIFPTDTLPAIGC---LPKFSNIIYDYKKRDRNKPLILM 54 Query: 64 VSDISMVKK--HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120 S+ + H S ++A +WPG LT+V+ S+ + T+ T R+P Sbjct: 55 GSEYKQLIDYVHESAKEDYENIASKYWPGALTMVIP--SSEKQTGILTSKDLTLGLRIPN 112 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHIL----SSSICKEIPLIIDGGISKIGL 176 + L++ G PL SAN SG I S I + IP G + Sbjct: 113 FHMAQSLLKETG-PLLTSSANISGLTGSITADGIALDFPSVEILEPIPWEKSSGKA---- 167 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETL 202 STI+ + R++R G + + L Sbjct: 168 -STIIFWKKSGDWRLIREGEVLVREL 192 >gi|66046814|ref|YP_236655.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. syringae B728a] gi|63257521|gb|AAY38617.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. syringae B728a] Length = 222 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 8/128 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E + AG + PT++ Y L + +AI R+ +++ + D+S + Sbjct: 30 IKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLSQLG 89 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127 A VD + K PGP T +L+ +HP +T RVP + L Sbjct: 90 LFAKVDTGAFRALKAHTPGPYTFILNATREVPRLVLHP----KRRTIGLRVPSHPIAQAL 145 Query: 128 IETYGHPL 135 +E G PL Sbjct: 146 LEQLGEPL 153 >gi|302188867|ref|ZP_07265540.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. syringae 642] Length = 222 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 8/128 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E + AG + PT++ Y L + +AI R+ +++ + D+S + Sbjct: 30 IKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLSQLG 89 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127 A VD + K PGP T +L+ +HP +T RVP + L Sbjct: 90 LFAKVDTGAFRALKAHTPGPYTFILNATREVPRLVLHP----KRRTIGLRVPSHPIAQAL 145 Query: 128 IETYGHPL 135 +E G PL Sbjct: 146 LEQLGEPL 153 >gi|257465550|ref|ZP_05629921.1| hypothetical protein AM202_03495 [Actinobacillus minor 202] gi|257451210|gb|EEV25253.1| hypothetical protein AM202_03495 [Actinobacillus minor 202] Length = 205 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 48/185 (25%), Positives = 77/185 (41%), Gaps = 5/185 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E + I PT++ Y L N +A+ R+ +I+K P + SD+S + Sbjct: 17 INQAVEIIKNDGVIVYPTDSGYALGCAIGNKSAMERIVKIRKLPENHNFTLVCSDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 +A V + L K P P T +L +T D+ KT RVP LI Sbjct: 77 NYAMVSNQAYRLIKNNVPNPYTFILP--ATKDVPRRLLTKRKTIGIRVPQNEIALALISA 134 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G P+ S + + + + +++ LII GG +G E T V + Sbjct: 135 LGEPILSCSLMLPDEEITQSDPEAIRDLLERQVDLIIHGGY--LGAEPTTVIDLTDDSPV 192 Query: 191 ILRPG 195 I+R G Sbjct: 193 IIREG 197 >gi|322614979|gb|EFY11904.1| hypothetical protein SEEM315_01811 [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621427|gb|EFY18281.1| hypothetical protein SEEM971_11630 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623231|gb|EFY20073.1| hypothetical protein SEEM973_05841 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628521|gb|EFY25309.1| hypothetical protein SEEM974_16300 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633685|gb|EFY30425.1| hypothetical protein SEEM201_01494 [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638507|gb|EFY35202.1| hypothetical protein SEEM202_14835 [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640823|gb|EFY37472.1| hypothetical protein SEEM954_09139 [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645313|gb|EFY41841.1| hypothetical protein SEEM054_03164 [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651804|gb|EFY48176.1| hypothetical protein SEEM675_03227 [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654299|gb|EFY50621.1| hypothetical protein SEEM965_10369 [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659264|gb|EFY55512.1| hypothetical protein SEEM19N_12191 [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662734|gb|EFY58941.1| hypothetical protein SEEM801_18172 [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667655|gb|EFY63815.1| hypothetical protein SEEM507_07019 [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671931|gb|EFY68052.1| hypothetical protein SEEM877_04046 [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677023|gb|EFY73087.1| hypothetical protein SEEM867_17434 [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322680315|gb|EFY76354.1| hypothetical protein SEEM180_05885 [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685256|gb|EFY81252.1| hypothetical protein SEEM600_09039 [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195434|gb|EFZ80613.1| hypothetical protein SEEM581_00405 [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199315|gb|EFZ84409.1| hypothetical protein SEEM501_04659 [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204773|gb|EFZ89769.1| hypothetical protein SEEM460_05081 [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205931|gb|EFZ90894.1| hypothetical protein SEEM020_06034 [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323209959|gb|EFZ94868.1| hypothetical protein SEEM6152_14301 [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217256|gb|EGA01977.1| hypothetical protein SEEM0077_19770 [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220711|gb|EGA05156.1| hypothetical protein SEEM0047_22885 [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227965|gb|EGA12117.1| hypothetical protein SEEM0055_13137 [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323232120|gb|EGA16227.1| hypothetical protein SEEM0052_17269 [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234647|gb|EGA18734.1| hypothetical protein SEEM3312_15960 [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238099|gb|EGA22158.1| hypothetical protein SEEM5258_03733 [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243297|gb|EGA27316.1| hypothetical protein SEEM1156_03139 [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248446|gb|EGA32381.1| hypothetical protein SEEM9199_22439 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252552|gb|EGA36395.1| hypothetical protein SEEM8282_02206 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255423|gb|EGA39189.1| hypothetical protein SEEM8283_12880 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260825|gb|EGA44427.1| hypothetical protein SEEM8284_12339 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267588|gb|EGA51071.1| hypothetical protein SEEM8285_08414 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270946|gb|EGA54382.1| hypothetical protein SEEM8287_13334 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 206 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 46/187 (24%), Positives = 83/187 (44%), Gaps = 8/187 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + + G I PT++ Y L + A+ R+ I+ P + D+S + Sbjct: 17 INQAVDIVLKGGVIVYPTDSGYALGCKIEDKGAMERICRIRHLPDGHNFTLMCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 ++ VD ++ L K PG T +L T ++ L KT RVP L++ Sbjct: 77 TYSYVDNVAFRLMKNNTPGNYTFILK--GTKEVPRRLLQEKRKTIGLRVPSNPIALALLD 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKK 188 T G P+ S G + + + K++ LII GG +G + +T++++ + Sbjct: 135 TLGEPMLSTSLMLPGSDFTESDPEEIKDRLEKQVDLIIHGGY--LGQQPTTVIDLTNDSP 192 Query: 189 VRILRPG 195 V +LR G Sbjct: 193 V-VLREG 198 >gi|257482786|ref|ZP_05636827.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 222 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 8/128 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E + AG + PT++ Y L + +AI R+ +++ + D+S + Sbjct: 30 IKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLSQLG 89 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127 A VD + K PGP T +L+ +HP +T RVP + L Sbjct: 90 LFAKVDTGAFRALKAHTPGPYTFILNATREVPRLVLHP----KRRTIGLRVPSHPIAQAL 145 Query: 128 IETYGHPL 135 +E G PL Sbjct: 146 LEQLGEPL 153 >gi|262341230|ref|YP_003284085.1| Sua5/YciO/YrdC/YwlC family protein [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272567|gb|ACY40475.1| Sua5/YciO/YrdC/YwlC family protein [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 192 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 11/140 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + K+ + L G + PT+TV+GL D+ N AI ++ +IK R +I V SM + Sbjct: 7 IEKSVDILKKGKSLLYPTDTVWGLGCDAFNVEAINKICKIKNRSFSKSMILLVE--SMDR 64 Query: 72 KHASVDPLSLHLAKLFWPG------PLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 H V ++ ++ P+T+V D ++ + LS N T R+ F Sbjct: 65 LHQLVGKITDFTRQIIVDNIAKKNKPITIVYDHVNQIASNLLSEDN--TLAIRLTYDPFC 122 Query: 125 KKLIETYGHPLAIPSANRSG 144 LI+ P+ SAN SG Sbjct: 123 VCLIQNLDRPIISTSANLSG 142 >gi|15676348|ref|NP_273484.1| hypothetical protein NMB0436 [Neisseria meningitidis MC58] gi|7225661|gb|AAF40874.1| conserved hypothetical protein [Neisseria meningitidis MC58] Length = 213 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 11/114 (9%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E ++ G + PT++ Y L + A+ R+ I+K + L +D+S + Sbjct: 24 IKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLSELG 83 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-----HPLSTANLKTACFRVP 120 +A VD + K PGP T +L +T D+ HP KT R+P Sbjct: 84 TYAKVDNVQFRQLKAATPGPYTFILQ--ATKDVPARTLHP----KRKTIGLRIP 131 >gi|332969027|gb|EGK08067.1| Sua5/YciO/YrdC/YwlC family protein [Kingella kingae ATCC 23330] Length = 206 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 44/174 (25%), Positives = 72/174 (41%), Gaps = 10/174 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++ACE + G +PT++ Y L + TA+ R+ I+K + L +D+S + Sbjct: 17 IKQACEIVRQGGVAVLPTDSCYALVCQLGDKTAMERILSIRKIDLKHHLTLLCADLSELG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 +A VD K+ PG T +L + +HP KT RVP L Sbjct: 77 TYAKVDNSQFRQLKMTTPGAYTFILPASKEVPNRTLHP----KRKTIGLRVPDNAIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 + G PL + + + + + + L+IDGG G E T V Sbjct: 133 LRELGEPLLSCTLMLPEDDEPLSDPYEIRERLEHSVDLVIDGGWC--GTEPTTV 184 >gi|331092924|ref|ZP_04587538.2| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021931|gb|EGI01988.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 209 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 8/128 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E + AG + PT++ Y L + +AI R+ +++ + D+S + Sbjct: 17 IKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLSQLG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127 A VD + K PGP T +L+ +HP +T RVP + L Sbjct: 77 LFAKVDTGAFRALKAHTPGPYTFILNATREVPRLVLHP----KRRTIGLRVPSHPIAQAL 132 Query: 128 IETYGHPL 135 +E G PL Sbjct: 133 LEQLGEPL 140 >gi|289624034|ref|ZP_06456988.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289650385|ref|ZP_06481728.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. aesculi str. 2250] Length = 222 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 8/128 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E + AG + PT++ Y L + +AI R+ +++ + D+S + Sbjct: 30 IKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLSQLG 89 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127 A VD + K PGP T +L+ +HP +T RVP + L Sbjct: 90 LFAKVDTGAFRALKAHTPGPYTFILNATREVPRLVLHP----KRRTIGLRVPSHPIAQAL 145 Query: 128 IETYGHPL 135 +E G PL Sbjct: 146 LEQLGEPL 153 >gi|113954257|ref|YP_729767.1| YrdC domain-containing protein [Synechococcus sp. CC9311] gi|113881608|gb|ABI46566.1| yrdC domain, putative [Synechococcus sp. CC9311] Length = 205 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 46/140 (32%), Positives = 61/140 (43%), Gaps = 29/140 (20%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI----------CHVSDIS 68 L AG +PT+T+ LA P +++ +KKRP PLI CHVS ++ Sbjct: 18 LRAGGAALLPTDTLPALA---SMPEQAAQIWRLKKRPQDKPLILMGADVDALLCHVSPVA 74 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVP-CGFTK 125 A LA+ WPG LTLVL ++P T R+P C Sbjct: 75 RADASA--------LAQRHWPGALTLVLPAFGPCAETLNP----GCATLGLRIPACKPML 122 Query: 126 KLIETYGHPLAIPSANRSGQ 145 L+ G PLA SAN SG+ Sbjct: 123 DLLRCSG-PLATTSANLSGE 141 >gi|260789488|ref|XP_002589778.1| hypothetical protein BRAFLDRAFT_90451 [Branchiostoma floridae] gi|229274961|gb|EEN45789.1| hypothetical protein BRAFLDRAFT_90451 [Branchiostoma floridae] Length = 160 Score = 44.3 bits (103), Expect = 0.023, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 37/57 (64%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 L A + L AG IA+PT+T+YGLA +++ A+ ++Y IK R + P+ V+++S Sbjct: 100 LSMAAKSLQAGNIIAVPTDTIYGLAGLAQSTEAVEQIYAIKGRNSSKPVAISVAEVS 156 >gi|10440179|dbj|BAB15668.1| unnamed protein product [Homo sapiens] Length = 127 Score = 44.3 bits (103), Expect = 0.023, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 13/87 (14%) Query: 118 RVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG- 175 R+P F + L + + PLA+ SAN S Q S NV+ + ++ L+IDGG +IG Sbjct: 21 RIPDHAFMQDLAQMFEGPLALTSANLSSQASSLNVEEF--QDLWPQLSLVIDGG--QIGD 76 Query: 176 -------LESTIVNVQCEKKVRILRPG 195 L ST+V++ K I+RPG Sbjct: 77 GQSPECRLGSTVVDLSVPGKFGIIRPG 103 >gi|90416537|ref|ZP_01224468.1| hypothetical protein GB2207_05027 [marine gamma proteobacterium HTCC2207] gi|90331736|gb|EAS46964.1| hypothetical protein GB2207_05027 [marine gamma proteobacterium HTCC2207] Length = 204 Score = 44.3 bits (103), Expect = 0.024, Method: Compositional matrix adjust. Identities = 43/172 (25%), Positives = 73/172 (42%), Gaps = 10/172 (5%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 KA + G I PT++VY + + A+ R+ I++ + D+S + + Sbjct: 19 KAAAIVRKGGVIVYPTDSVYAIGCHIGDKQAMDRIRSIRQLDKNHNFTLMCRDLSELASY 78 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVP-CGFTKKLIE 129 A VD + K PGP T +L S +HP KT RVP + L++ Sbjct: 79 ARVDNSAFRSLKAQTPGPFTFILPATSEVPRRLMHP----KRKTIGLRVPDSPIAQALLD 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 G P+ + G + + + +++ + ++IDGG GLE T V Sbjct: 135 ELGEPMMSVTLILPGDEYPLSDPYDIRAALEAHVDVLIDGG--HCGLEPTTV 184 >gi|330960478|gb|EGH60738.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 209 Score = 44.3 bits (103), Expect = 0.024, Method: Compositional matrix adjust. Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 8/128 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E + AG + PT++ Y L + +AI R+ +++ + D+S + Sbjct: 17 IKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLSQLG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127 A VD + K PGP T +L+ +HP +T RVP + L Sbjct: 77 LFAKVDTGAFRALKAHTPGPYTFILNATREVPRLVLHP----KRRTIGLRVPSHPIAQAL 132 Query: 128 IETYGHPL 135 +E G PL Sbjct: 133 LEQLGEPL 140 >gi|316984949|gb|EFV63905.1| yrdC domain protein [Neisseria meningitidis H44/76] gi|325134902|gb|EGC57535.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis M13399] gi|325140950|gb|EGC63457.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis CU385] gi|325144974|gb|EGC67257.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis M01-240013] gi|325199623|gb|ADY95078.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis H44/76] Length = 206 Score = 44.3 bits (103), Expect = 0.024, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 11/114 (9%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E ++ G + PT++ Y L + A+ R+ I+K + L +D+S + Sbjct: 17 IKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLSELG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-----HPLSTANLKTACFRVP 120 +A VD + K PGP T +L +T D+ HP KT R+P Sbjct: 77 TYAKVDNVQFRQLKAATPGPYTFILQ--ATKDVPARTLHP----KRKTIGLRIP 124 >gi|197285200|ref|YP_002151072.1| dsRNA-binding protein [Proteus mirabilis HI4320] gi|227355625|ref|ZP_03840019.1| RNA binding protein [Proteus mirabilis ATCC 29906] gi|194682687|emb|CAR42839.1| putative dsRNA-binding protein [Proteus mirabilis HI4320] gi|227164232|gb|EEI49125.1| RNA binding protein [Proteus mirabilis ATCC 29906] Length = 206 Score = 44.3 bits (103), Expect = 0.024, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 78/186 (41%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + ++ + L G + PT++ Y + N A+ R+ I++ + D+S + Sbjct: 17 IEQSADVLRKGGVVIYPTDSGYAIGCCLDNKDAMTRICRIRQLDKHHNFTLMCRDLSEIA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD + L K PG T +L +T D+ L KT RVP L+E Sbjct: 77 TYAYVDNVVFRLIKNNTPGNYTFILK--ATKDVPKRLMNDKRKTIGLRVPSNPIALALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL S G + ++ + K++ L+I GG +G + T V E Sbjct: 135 NIGEPLMSTSLILPGNDFAESDPEEINDLLGKQVDLVIHGGY--LGQKPTTVIDLTEDSP 192 Query: 190 RILRPG 195 I+R G Sbjct: 193 VIVREG 198 >gi|28869017|ref|NP_791636.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28852257|gb|AAO55331.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas syringae pv. tomato str. DC3000] gi|330876948|gb|EGH11097.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330966749|gb|EGH67009.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 209 Score = 44.3 bits (103), Expect = 0.024, Method: Compositional matrix adjust. Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 8/128 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E + AG + PT++ Y L + +AI R+ +++ + D+S + Sbjct: 17 IKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLSQLG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127 A VD + K PGP T +L+ +HP +T RVP + L Sbjct: 77 LFAKVDTGAFRALKAHTPGPYTFILNATREVPRLILHP----KRRTIGLRVPSHPIAQAL 132 Query: 128 IETYGHPL 135 +E G PL Sbjct: 133 LEQLGEPL 140 >gi|75908905|ref|YP_323201.1| translation factor SUA5 [Anabaena variabilis ATCC 29413] gi|75702630|gb|ABA22306.1| translation factor SUA5 [Anabaena variabilis ATCC 29413] Length = 219 Score = 44.3 bits (103), Expect = 0.024, Method: Compositional matrix adjust. Identities = 53/199 (26%), Positives = 90/199 (45%), Gaps = 20/199 (10%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L +G + PT+TVY + D +A+ R+ +IK+ PL +S V +A V Sbjct: 24 LSSGAVMLYPTDTVYAIGCDLNVKSAVERVRQIKQLANDKPLTFLCPSLSNVATYAFVSD 83 Query: 79 LSLHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVPC-GFTKKLIETYGHPL 135 + + K PG T LL T + P + + KT RVP L+E G+P+ Sbjct: 84 TAYRIMKRLIPGTYTF---LLPATKLVPKLVQSPKRKTTGIRVPNHTVCLALLEALGNPI 140 Query: 136 AIPSAN------RSGQI-----SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 SA+ +G++ SIT++ + + K + +I+D G STIV++ Sbjct: 141 ISTSAHIPPDEAGNGKVGIVSESITSMAELF-DRVDKLVDVIVDTGQEPTYDVSTIVDLT 199 Query: 185 CEKKVRILRPGGLEIETLK 203 ++ ++ GL E +K Sbjct: 200 GDEP--MITRQGLGWEAVK 216 >gi|56708352|ref|YP_170248.1| Sua5_yciO_yrdC family protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110670822|ref|YP_667379.1| Sua5_yciO_yrdC family protein [Francisella tularensis subsp. tularensis FSC198] gi|224457478|ref|ZP_03665951.1| Sua5_yciO_yrdC family protein [Francisella tularensis subsp. tularensis MA00-2987] gi|254370974|ref|ZP_04986977.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254875175|ref|ZP_05247885.1| sua5/yciO/yrdC family protein [Francisella tularensis subsp. tularensis MA00-2987] gi|56604844|emb|CAG45926.1| Sua5_yciO_yrdC family protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110321155|emb|CAL09309.1| Sua5_yciO_yrdC family protein [Francisella tularensis subsp. tularensis FSC198] gi|151569215|gb|EDN34869.1| hypothetical protein FTBG_01595 [Francisella tularensis subsp. tularensis FSC033] gi|254841174|gb|EET19610.1| sua5/yciO/yrdC family protein [Francisella tularensis subsp. tularensis MA00-2987] gi|282159967|gb|ADA79358.1| Sua5_yciO_yrdC family protein [Francisella tularensis subsp. tularensis NE061598] Length = 204 Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust. Identities = 52/192 (27%), Positives = 87/192 (45%), Gaps = 8/192 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++ LD IAIPT++ Y LA ++ I ++ +I+ + + D+S + Sbjct: 17 LKELANILDNDGVIAIPTDSGYALACRMKSKKGIDKIIKIRNLDSSHNFTLCCKDLSEIS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCGFTKKLIET 130 ++A VD + L K + PGP T +L+ +T + L T + T RV + + I Sbjct: 77 EYAKVDNNAYRLLKRYTPGPYTFILN--ATKKVSSLLVTKSKNTVGIRVSEHYVPRAISA 134 Query: 131 -YGHPLAIPSANRSG-QISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 G PL I S G Q +T+ + S I + +++ G + T V E Sbjct: 135 EIGEPLVISSFIVPGHQYVVTDCDEV-DSQIMNYLDAVVES--DYCGYDPTTVVELLELP 191 Query: 189 VRILRPGGLEIE 200 +ILR G EI+ Sbjct: 192 YQILRQGAGEID 203 >gi|254672732|emb|CBA06707.1| conserved hypothetical protein [Neisseria meningitidis alpha275] Length = 206 Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 11/114 (9%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E ++ G + PT++ Y L + A+ R+ I+K + L +D+S + Sbjct: 17 IKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLSELG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-----HPLSTANLKTACFRVP 120 +A VD + K PGP T +L +T D+ HP KT R+P Sbjct: 77 TYAKVDNVQFRQLKAATPGPYTFILQ--ATKDVPARTLHP----KRKTIGLRIP 124 >gi|73540803|ref|YP_295323.1| Sua5/YciO/YrdC/YwlC [Ralstonia eutropha JMP134] gi|72118216|gb|AAZ60479.1| Sua5/YciO/YrdC/YwlC [Ralstonia eutropha JMP134] Length = 207 Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 4/161 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A + + G IA+PT++ Y L + A+ RL ++ + L SD+S + Sbjct: 17 IKQAVQIIRQGGLIALPTDSSYALGCQLDDKAAVERLRRLRGIDDKHHLTLMCSDLSELG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKKLIE 129 A VD K PGP +L+ +T ++ LS + KT RVP L+ Sbjct: 77 SFARVDNRQYRWIKGATPGPYVFILE--ATKEVPRRLSHPSRKTIGVRVPEHAIPLALLA 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 G PL + G N + + + K + L+I GG Sbjct: 135 DAGEPLLTATLQLPGDEEPMNDPAEIRARLEKLLDLVICGG 175 >gi|308388638|gb|ADO30958.1| hypothetical protein NMBB_0480 [Neisseria meningitidis alpha710] gi|325130804|gb|EGC53538.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis OX99.30304] gi|325137003|gb|EGC59600.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis M0579] gi|325202753|gb|ADY98207.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis M01-240149] gi|325208749|gb|ADZ04201.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis NZ-05/33] Length = 206 Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 11/114 (9%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E ++ G + PT++ Y L + A+ R+ I+K + L +D+S + Sbjct: 17 IKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLSELG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-----HPLSTANLKTACFRVP 120 +A VD + K PGP T +L +T D+ HP KT R+P Sbjct: 77 TYAKVDNVQFRQLKAATPGPYTFILQ--ATKDVPARTLHP----KRKTIGLRIP 124 >gi|325205504|gb|ADZ00957.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis M04-240196] Length = 206 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 11/114 (9%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E ++ G + PT++ Y L + A+ R+ I+K + L +D+S + Sbjct: 17 IKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLSELG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-----HPLSTANLKTACFRVP 120 +A VD + K PGP T +L +T D+ HP KT R+P Sbjct: 77 TYAKVDNVQFRQLKAATPGPYTFILQ--ATKDVPARTLHP----KRKTIGLRIP 124 >gi|237731719|ref|ZP_04562200.1| conserved hypothetical protein [Citrobacter sp. 30_2] gi|226907258|gb|EEH93176.1| conserved hypothetical protein [Citrobacter sp. 30_2] Length = 206 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 76/186 (40%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E + G I PT++ Y L + A+ R+ I+ P + D+S + Sbjct: 17 INQAVEIVRKGGVIVYPTDSGYALGCKIEDKGAMERICRIRHLPDGHNFTLMCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 ++ VD ++ L K PG T +L T ++ L KT RVP L+E Sbjct: 77 TYSFVDNVAFRLIKNNTPGNYTFILK--GTKEVPRRLLQEKRKTIGLRVPSNPIALALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G P+ S G + + + K + LII GG +G + T V + Sbjct: 135 ALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKLVDLIIHGGY--LGQQPTTVIDLTDDSP 192 Query: 190 RILRPG 195 +LR G Sbjct: 193 VVLREG 198 >gi|254448704|ref|ZP_05062162.1| Sua5/YciO/YrdC/YwlC family protein [gamma proteobacterium HTCC5015] gi|198261712|gb|EDY85999.1| Sua5/YciO/YrdC/YwlC family protein [gamma proteobacterium HTCC5015] Length = 206 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 41/176 (23%), Positives = 74/176 (42%), Gaps = 13/176 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++ E + G + PT++ Y + + A+ R+ I++ + D+S + Sbjct: 17 VQQVAEIIRGGGIVVYPTDSSYAIGCHLDDKRALERIQRIRQVDKHHNFTLMCRDLSELG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130 +A V + L K PGP T + S L+ KT RVP C T ++E Sbjct: 77 NYAKVGNQAFRLLKSHTPGPYTFIFSATSQVP-RRLAHPKKKTIGLRVPDCNITLAILEA 135 Query: 131 YGHP-----LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 G P L +P+ + + ++ L ++ + II+GG +I E T V Sbjct: 136 LGEPMLSTTLILPNVEWPELVDVNFLRDQLENA----VDAIIEGG--QIPAEPTTV 185 >gi|47459206|ref|YP_016068.1| putative translation factor [Mycoplasma mobile 163K] gi|47458535|gb|AAT27857.1| putative translation factor [Mycoplasma mobile 163K] Length = 162 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 42/169 (24%), Positives = 71/169 (42%), Gaps = 29/169 (17%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 ++ T T G+++ NP LYE+K RP + V I +K + + A Sbjct: 20 VSTDTVTGIGISIHHENPNL---LYELKNRPKNKKIAIVVGSIEQARKMPFWNEKAEAFA 76 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRS 143 + WPG +TL+++ R+P C + I G P + SAN+S Sbjct: 77 NILWPGAVTLIVN----------------DQAIRMPNCKKLQDFIIDEG-PFFLTSANKS 119 Query: 144 GQ--ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G+ I I N + I +I G G S I++++ +K++R Sbjct: 120 GEDPIEINNAQKIFPE--VTKIYNFCKGN----GKSSIIIDIETKKRLR 162 >gi|77360238|ref|YP_339813.1| RNA binding protein [Pseudoalteromonas haloplanktis TAC125] gi|76875149|emb|CAI86370.1| putative RNA binding protein with YrdC/RibB domain [Pseudoalteromonas haloplanktis TAC125] Length = 206 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 45/191 (23%), Positives = 78/191 (40%), Gaps = 10/191 (5%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S +++A + + G + PT++ Y + + N A R+ I+ + D+S Sbjct: 14 SRLIQQAADIIKQGGVVVYPTDSGYAIGCNIGNKQAKERIERIRGIEKHHNFTLVCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS----TANLKTACFRVPCGFT 124 + +A VD + L K PGP T + L+ T ++ + C Sbjct: 74 ELSTYARVDNQTFRLIKNNTPGPYTFIFKGTKEVPKRLLNDKKKTIGIRVIAHPIACA-- 131 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 L+E G PL S G+ + + + K + LII GG + ++T V Sbjct: 132 --LLEELGEPLMSCSLILPGEEYTESDPDEIIERLDKHVDLIIHGGY--LAEQATTVVDL 187 Query: 185 CEKKVRILRPG 195 E +V+ILR G Sbjct: 188 SEDEVQILRVG 198 >gi|213968655|ref|ZP_03396797.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. tomato T1] gi|301384615|ref|ZP_07233033.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. tomato Max13] gi|302062060|ref|ZP_07253601.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. tomato K40] gi|302130738|ref|ZP_07256728.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213926588|gb|EEB60141.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. tomato T1] gi|331017429|gb|EGH97485.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 222 Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust. Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 8/128 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E + AG + PT++ Y L + +AI R+ +++ + D+S + Sbjct: 30 IKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLSQLG 89 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127 A VD + K PGP T +L+ +HP +T RVP + L Sbjct: 90 LFAKVDTGAFRALKAHTPGPYTFILNATREVPRLILHP----KRRTIGLRVPSHPIAQAL 145 Query: 128 IETYGHPL 135 +E G PL Sbjct: 146 LEQLGEPL 153 >gi|284929281|ref|YP_003421803.1| putative translation factor [cyanobacterium UCYN-A] gi|284809725|gb|ADB95422.1| putative translation factor (SUA5) [cyanobacterium UCYN-A] Length = 134 Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 7/87 (8%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 K + L G ++ PT+T+ LA +N ++I + +KKR PLI S V K+ Sbjct: 8 KLVQGLFEGKVVSFPTDTIPALATLPQNASSI---FALKKRSFQKPLILMCSSSENVWKY 64 Query: 74 ASVDPLSL----HLAKLFWPGPLTLVL 96 + L ++A +WPGPLTLVL Sbjct: 65 TQGNSEELRNWKNIAYRYWPGPLTLVL 91 >gi|119476916|ref|ZP_01617197.1| putative translation factor (SUA5) [marine gamma proteobacterium HTCC2143] gi|119449723|gb|EAW30960.1| putative translation factor (SUA5) [marine gamma proteobacterium HTCC2143] Length = 207 Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust. Identities = 46/191 (24%), Positives = 78/191 (40%), Gaps = 10/191 (5%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S + +A + L G I PT++ Y + N A+ + ++K + + D+S Sbjct: 14 SRLINQAVDILKGGGVIVYPTDSGYAIGCQLGNKKALDTIRRVRKLDSSHNFTLVCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVP-CGFT 124 + +A VD + L K PGP T +L S +HP +T RVP Sbjct: 74 ELGSYAKVDNTAYRLLKNHTPGPYTFILKATSEVPKRLMHP----KRRTIGLRVPENNIA 129 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 +L+ P+ + G + + ++ E+ L+IDGG G+E T V Sbjct: 130 LQLLAGLNEPMMSVTMILPGDDLPMTDPYDIRQTLEHELDLVIDGGYC--GMEPTSVIDL 187 Query: 185 CEKKVRILRPG 195 + I+R G Sbjct: 188 VDDMPVIIRRG 198 >gi|34497149|ref|NP_901364.1| hypothetical protein CV_1694 [Chromobacterium violaceum ATCC 12472] gi|34103006|gb|AAQ59369.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 207 Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust. Identities = 52/190 (27%), Positives = 84/190 (44%), Gaps = 14/190 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK---RPAMNPLICHVSDIS 68 +R+A + L G IA PT++ Y L + A+ R+ EI+ + + L+CH D+S Sbjct: 17 IREAVKILREGGVIAYPTDSCYALGCALGDKEAMERILEIRGVDLKQRLMTLVCH--DLS 74 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC--FRVP-CGFTK 125 + +A VD L K PG T +L +T ++ P T + K A RVP Sbjct: 75 ELANYAKVDNRQYRLLKSTTPGSYTFILQ--ATREV-PRRTLHPKRATIGLRVPDHKVAL 131 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 L+E G P+ + G + + + + + ++DGG G E T V V Sbjct: 132 ALLEELGEPILSCTLMLPGDDVPMSDPYEIRERLEHLVDAVLDGGWC--GTEPTTV-VDM 188 Query: 186 EKKVRILRPG 195 V ++R G Sbjct: 189 TDGVELVREG 198 >gi|88802782|ref|ZP_01118309.1| putative Sua5/yciO/yrdC family protein [Polaribacter irgensii 23-P] gi|88781640|gb|EAR12818.1| putative Sua5/yciO/yrdC family protein [Polaribacter irgensii 23-P] Length = 205 Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust. Identities = 48/194 (24%), Positives = 85/194 (43%), Gaps = 12/194 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK---RPAMNPLICHVSDIS 68 + K + L AG + PT+TVYGL D A+ ++ ++K A IC+ D+S Sbjct: 17 ITKIVKVLQAGGLVIYPTDTVYGLGCDITKVKALEKIAQLKGVKLDKANFSFICN--DLS 74 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126 + + +D + + K PGP T +L +T++ P KT R+P + Sbjct: 75 HLSDYVKQIDSTTFKILKRALPGPYTFILP--GSTNL-PKVFKKKKTVGIRIPDNNIIRM 131 Query: 127 LIETYGHPLAIPSA-NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 L+ G+P+ S + + T ++ + ++IDGG ST++++ Sbjct: 132 LVAELGNPIVSTSIRDEDDVLEYTTDPELIFEKWQNSVDVVIDGGYGD-NEPSTVIDLTE 190 Query: 186 EKKVRILRPGGLEI 199 KV G L+I Sbjct: 191 APKVIREGKGSLDI 204 >gi|313667824|ref|YP_004048108.1| hypothetical protein NLA_4790 [Neisseria lactamica ST-640] gi|313005286|emb|CBN86719.1| conserved hypothetical protein [Neisseria lactamica 020-06] Length = 234 Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 11/114 (9%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +R+ E ++ G + PT++ Y L + A+ R+ I+K + L +D+S + Sbjct: 45 IRQVVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLSELG 104 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-----HPLSTANLKTACFRVP 120 +A++D + K PGP T +L +T D+ HP KT R+P Sbjct: 105 TYAAIDNVQFRQLKAATPGPYTFILQ--ATKDVPARTLHP----KRKTIGLRIP 152 >gi|212277729|sp|B3PGZ1|RIMN_CELJU RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN Length = 189 Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust. Identities = 36/143 (25%), Positives = 60/143 (41%), Gaps = 6/143 (4%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A + G IA PTE V+GL + + A+ L +K+RP +I +++ ++ Sbjct: 13 AANMMRQGGVIAYPTEAVWGLGCNPFDEDAVADLLALKQRPVEKGVILIAANLQQIEPFI 72 Query: 75 S-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCG-FTKKLIETY 131 +D L K WPGP+T L+ + P T + RV L + Sbjct: 73 DHLDDLQRQRLKNTWPGPVTW---LVPNNGLAPHWITGAFPSVALRVTDHPVAAGLCRAF 129 Query: 132 GHPLAIPSANRSGQISITNVKHI 154 G P+ S N +G+ N+ + Sbjct: 130 GGPVVSTSCNPAGKPPARNIHEV 152 >gi|220905671|ref|YP_002480982.1| SUA5/yciO/yrdC domain-containing protein [Cyanothece sp. PCC 7425] gi|219862282|gb|ACL42621.1| SUA5/yciO/yrdC domain protein [Cyanothece sp. PCC 7425] Length = 200 Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 63/137 (45%), Gaps = 14/137 (10%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD----ISMVKKHASVDPLS 80 I+ PT+TV LA P ++ K+R PLI + V+ + + Sbjct: 20 ISFPTDTVPALAT---RPDRAELIFAAKQRQPDKPLILMAATPEALWPYVQGSTAEWQIW 76 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVP-CGFTKKLIETYGHPLAI 137 +A+ +WPG LTLV L +D P ++ KT R+P G +++ G PLA Sbjct: 77 QSVAERYWPGALTLV---LPASDRLPAVMNPIEGKTIGVRIPNWGLALTILQQTG-PLAT 132 Query: 138 PSANRSGQISITNVKHI 154 S NRSGQ +T + I Sbjct: 133 TSVNRSGQPPLTALNEI 149 >gi|227326053|ref|ZP_03830077.1| hypothetical protein PcarcW_01496 [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 206 Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust. Identities = 46/186 (24%), Positives = 76/186 (40%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + ++ EFL G I PT++ Y L A+ R+ I+ + + D+S + Sbjct: 17 INQSVEFLHKGGVIVYPTDSGYALGCMLGEKNALERICRIRDLGSDHNFTLMCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD + L K PG T +L +T ++ L KT RVP +L+ Sbjct: 77 TYAHVDNSAFRLIKNNTPGNYTFILK--ATKEVPRRLMNEKRKTIGLRVPSNPIALELLA 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 PL + G + + + K++ L+I GG +G + T V E Sbjct: 135 ALNEPLMSTTLMLPGNDFAESDPEEIQERLGKQVDLVIHGG--SLGQQPTTVIDLTESVP 192 Query: 190 RILRPG 195 R+ R G Sbjct: 193 RVAREG 198 >gi|123442466|ref|YP_001006445.1| hypothetical protein YE2207 [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122089427|emb|CAL12275.1| conserved hypothetical protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 206 Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust. Identities = 44/186 (23%), Positives = 78/186 (41%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + ++ + L G + PT++ Y L + TA+ R+ I++ + D+S + Sbjct: 17 INQSVDVLRKGGVVVYPTDSGYALGCRLEDKTAMERICRIRQLDGNHNFTLVCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD + L K PG T +L +T ++ L KT RVP L++ Sbjct: 77 TYAYVDNPAFRLIKNNTPGNYTFILK--ATKEVPRRLMNDKRKTIGLRVPSNPIALALLD 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL + G + + + K++ LII GG +G + T V + Sbjct: 135 VLGEPLMSTTLMLPGNDFAESDPEEIKEYLGKQVDLIIHGG--SLGQQPTTVIDLTDSSP 192 Query: 190 RILRPG 195 ++R G Sbjct: 193 EVIREG 198 >gi|221103449|ref|XP_002169716.1| PREDICTED: similar to predicted protein, partial [Hydra magnipapillata] Length = 143 Score = 43.9 bits (102), Expect = 0.030, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 60/114 (52%), Gaps = 13/114 (11%) Query: 89 PGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQIS 147 PGP+TLV S + + T+N + R+P C F + L + P+A+ SAN S +S Sbjct: 16 PGPVTLVFQRSSLLNSYLNPTSN--SIGVRIPKCAFIQTLAQKCQQPIALTSANISSAMS 73 Query: 148 ITNVKHILSSSICKEIPLIIDGGI------SKIGLESTIVNVQCEKKVRILRPG 195 ++ + ++ LI+DGG S++G ST+V++ +++ I+R G Sbjct: 74 SLDINEF--EELWPKLDLIVDGGTLGSSEQSRLG--STVVDLTKKREFTIIREG 123 >gi|89891475|ref|ZP_01202980.1| translation factor, Sua5/YciO/YrdC/YwlC family [Flavobacteria bacterium BBFL7] gi|89516249|gb|EAS18911.1| translation factor, Sua5/YciO/YrdC/YwlC family [Flavobacteria bacterium BBFL7] Length = 205 Score = 43.9 bits (102), Expect = 0.030, Method: Compositional matrix adjust. Identities = 51/209 (24%), Positives = 92/209 (44%), Gaps = 17/209 (8%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEI---KKR 54 Q++ I + N L++ + + G + PT+TVYGL D + A+ ++ +I K Sbjct: 3 QLVRIYEDNPSPKELQRIAKAMRDGALVIYPTDTVYGLGCDINHKGALEKVAKIRGVKLE 62 Query: 55 PAMNPLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK 113 A IC +S + ++ S +D + L K PGP T + L + P K Sbjct: 63 KANFSFICE--SLSNLSEYVSQIDTATFKLLKRNLPGPYTFI---LPGNNNLPSVFKKKK 117 Query: 114 TACFRVP-CGFTKKLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGI 171 T RVP L++ G+P+ S + I T ++ + +IDGG Sbjct: 118 TVGIRVPDNSIAIGLVQALGNPIISTSIKDEDEVIEYTTDPSLIVEKWDNLVDYVIDGGY 177 Query: 172 SKIGLESTIVNVQCEKKVRILRPGGLEIE 200 + ST++++ ++ V ++R G +E Sbjct: 178 GD-NIASTVIDLTGDEPV-LVREGKGSVE 204 >gi|170078316|ref|YP_001734954.1| Sua5/YciO/YrdC/YwlC family protein [Synechococcus sp. PCC 7002] gi|169885985|gb|ACA99698.1| Sua5/YciO/YrdC/YwlC family protein [Synechococcus sp. PCC 7002] Length = 223 Score = 43.9 bits (102), Expect = 0.031, Method: Compositional matrix adjust. Identities = 47/191 (24%), Positives = 88/191 (46%), Gaps = 11/191 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L + L AG + PT+TVY + D A++++ ++K+ PL S +S + Sbjct: 17 LEAIAQQLRAGAVMLYPTDTVYAIGCDLTAKQAVQKVRQLKRLANDKPLTFLCSSLSNIS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVPC-GFTKKLI 128 ++A V + + K PGP T LL T P + + ++ RVP + L+ Sbjct: 77 EYALVSDEAYRIMKRAIPGPYTF---LLPATKQVPKLVMSPKRRSTGIRVPDHAICQGLL 133 Query: 129 ETYGHPLAIPSA---NRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + G+P+ SA + G+ ++ K L ++ + +IID STI++ Sbjct: 134 QALGNPIISTSAHLPDEDGEPFTLGLEKARLFDALEPLVDIIIDSDSEPGTKTSTILDF- 192 Query: 185 CEKKVRILRPG 195 C+++ ++R G Sbjct: 193 CDRQPTLIRKG 203 >gi|118497072|ref|YP_898122.1| Sua5/YciO/YrdC family protein [Francisella tularensis subsp. novicida U112] gi|134301787|ref|YP_001121755.1| Sua5/YciO/YrdC/YwlC family protein [Francisella tularensis subsp. tularensis WY96-3418] gi|187931331|ref|YP_001891315.1| Sua5/YciO/YrdC family protein [Francisella tularensis subsp. mediasiatica FSC147] gi|194324308|ref|ZP_03058082.1| Sua5/YciO/YrdC/YwlC family protein [Francisella tularensis subsp. novicida FTE] gi|118422978|gb|ABK89368.1| Sua5/YciO/YrdC family protein [Francisella novicida U112] gi|134049564|gb|ABO46635.1| Sua5/YciO/YrdC/YwlC family protein [Francisella tularensis subsp. tularensis WY96-3418] gi|187712240|gb|ACD30537.1| Sua5/YciO/YrdC family protein [Francisella tularensis subsp. mediasiatica FSC147] gi|194321755|gb|EDX19239.1| Sua5/YciO/YrdC/YwlC family protein [Francisella tularensis subsp. novicida FTE] Length = 204 Score = 43.9 bits (102), Expect = 0.031, Method: Compositional matrix adjust. Identities = 50/191 (26%), Positives = 84/191 (43%), Gaps = 6/191 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++ LD IAIPT++ Y LA ++ I ++ +I+ + + D+S + Sbjct: 17 LKELANILDNDGVIAIPTDSGYALACRMKSKKGIDKIIKIRNLDSSHNFTLCCKDLSEIS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCGFTKKLIET 130 ++A VD + L K + PGP T +L+ +T + L T + T RV + + I Sbjct: 77 EYAKVDNNAYRLLKRYTPGPYTFILN--ATKKVSSLLVTKSKNTVGIRVSEHYVPRAISA 134 Query: 131 -YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL I S G + + S I + +++ G + T V E Sbjct: 135 EIGEPLVISSFIVPGHQHVVTDCDEVDSQIMNYLDAVVES--DYCGYDPTTVVELLELPY 192 Query: 190 RILRPGGLEIE 200 +ILR G EI+ Sbjct: 193 QILRQGAGEID 203 >gi|254468103|ref|ZP_05081509.1| putative yrdC domain protein [beta proteobacterium KB13] gi|207086913|gb|EDZ64196.1| putative yrdC domain protein [beta proteobacterium KB13] Length = 179 Score = 43.9 bits (102), Expect = 0.031, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 78/170 (45%), Gaps = 17/170 (10%) Query: 28 PTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL-HLAKL 86 PTE+ +GL +N A++++ IKKR + + ++ S+ +L H++ Sbjct: 19 PTESCFGLGCHPKNINALKKILIIKKRSKNKSFLLISDKVQKFFRYVSLSEKNLQHISD- 77 Query: 87 FWPGPLTLVL--DLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRS 143 WP + + +L S + P K C R+P K+ +E P+ SAN S Sbjct: 78 -WPKHTSYLFKKNLRSPMLLSP---KKEKIGC-RIPDHKKIKRTLENLNFPITSTSANFS 132 Query: 144 GQISITNVKHI---LSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 GQIS+ +H SS C +I++ + STI++ + +K +R Sbjct: 133 GQISLKFWRHCCRKFSSKSC----IIMNERVGNYKRPSTIIDFETKKIIR 178 >gi|260773018|ref|ZP_05881934.1| YrdC family protein [Vibrio metschnikovii CIP 69.14] gi|260612157|gb|EEX37360.1| YrdC family protein [Vibrio metschnikovii CIP 69.14] Length = 206 Score = 43.9 bits (102), Expect = 0.032, Method: Compositional matrix adjust. Identities = 44/186 (23%), Positives = 78/186 (41%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + G + PT++ Y L N A+ R+ +I++ + D+S + Sbjct: 17 INQAVAIIRNGGVVVYPTDSGYALGCQLENKQALERICQIRRLDDKHNFTLLCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD + L K PGP T + T ++ L KT RVP L+E Sbjct: 77 LYARVDNTAFRLLKNNTPGPYTFIFK--GTKEVPRRLMNVKRKTIGIRVPDNKIALDLLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL S G+ + + + + + +I++GG +G + T V E ++ Sbjct: 135 ALGEPLMSTSLILPGKETTESDPEEIRDRLEHLVDVILNGGY--LGEQPTTVIDFSEDEM 192 Query: 190 RILRPG 195 + R G Sbjct: 193 VVARLG 198 >gi|312958123|ref|ZP_07772646.1| SUA5/YciO/YrdC-like probable translation factor [Pseudomonas fluorescens WH6] gi|311287554|gb|EFQ66112.1| SUA5/YciO/YrdC-like probable translation factor [Pseudomonas fluorescens WH6] Length = 185 Score = 43.9 bits (102), Expect = 0.033, Method: Compositional matrix adjust. Identities = 43/130 (33%), Positives = 53/130 (40%), Gaps = 13/130 (10%) Query: 21 AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80 AG IA PTE V+GL D N A+ RL IK R LI +I P Sbjct: 16 AGAVIAYPTEAVWGLGCDPWNEEAVDRLLAIKNRSVDKGLILVADNIRQFDFLFEDFPQD 75 Query: 81 L--HLAKLFWPGPLTLVL---DLL--STTDIHPLSTANLKTA---CFRVPCGFTKKLIET 130 +A WPGP T ++ DLL T +H T L+ R C LI T Sbjct: 76 WIDRMAST-WPGPNTWLVPHQDLLPEWVTGVH--DTVALRVTDHPLVRDLCSLVGPLIST 132 Query: 131 YGHPLAIPSA 140 +P P+A Sbjct: 133 SANPQGRPAA 142 >gi|240948953|ref|ZP_04753309.1| hypothetical protein AM305_08629 [Actinobacillus minor NM305] gi|240296768|gb|EER47379.1| hypothetical protein AM305_08629 [Actinobacillus minor NM305] Length = 205 Score = 43.9 bits (102), Expect = 0.033, Method: Compositional matrix adjust. Identities = 48/185 (25%), Positives = 77/185 (41%), Gaps = 5/185 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E + I PT++ Y L N +A+ R+ +I+K P + SD+S + Sbjct: 17 INQAVEIIKNDGVIIYPTDSGYALGCAIGNKSAMERIVKIRKLPENHNFTLVCSDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 +A V + L K P P T +L +T D+ KT RVP LI Sbjct: 77 NYAMVSNQAYRLIKNNVPNPYTFILP--ATKDVPRRLLTKRKTIGIRVPQNEIALALISA 134 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G P+ S + + + + +++ LII GG +G E T V + Sbjct: 135 LGEPILSCSLMLPDEEITQSDPEAIRDLLERQVDLIIHGGY--LGAEPTTVIDLTDDSPV 192 Query: 191 ILRPG 195 I+R G Sbjct: 193 IIREG 197 >gi|70733538|ref|YP_257177.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas fluorescens Pf-5] gi|123658961|sp|Q4KKQ6|RIMN_PSEF5 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|68347837|gb|AAY95443.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas fluorescens Pf-5] Length = 185 Score = 43.9 bits (102), Expect = 0.033, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 62/149 (41%), Gaps = 21/149 (14%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + S +++A + AG IA PTE V+GL D N A+ RL IK R LI Sbjct: 1 MVSSWRVQQAAREIRAGAVIAYPTEAVWGLGCDPWNEEAVDRLLAIKSRSVDKGLILIAD 60 Query: 66 DISMVK------KHASVDPLSLHLAKLFWPGPLTLVL---DLL--STTDIHPLSTANLKT 114 +I +D +S WPGP T ++ +LL T +H T L+ Sbjct: 61 NIHQFDFLFEDFPDTWIDRMSST-----WPGPNTWLVPHQNLLPEWVTGVH--DTVALRV 113 Query: 115 A---CFRVPCGFTKKLIETYGHPLAIPSA 140 + R C LI T +P P+A Sbjct: 114 SDHPLVRELCSLVGPLISTSANPQGRPAA 142 >gi|323492457|ref|ZP_08097605.1| hypothetical protein VIBR0546_15511 [Vibrio brasiliensis LMG 20546] gi|323313244|gb|EGA66360.1| hypothetical protein VIBR0546_15511 [Vibrio brasiliensis LMG 20546] Length = 206 Score = 43.9 bits (102), Expect = 0.034, Method: Compositional matrix adjust. Identities = 46/186 (24%), Positives = 75/186 (40%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + G + PT++ Y L N A+ R+ +I++ + D+S + Sbjct: 17 INQAVAIIRNGGVVVYPTDSGYALGCQLENKQALERICQIRRLNDKHNFTLLCRDLSEIS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD + L K PGP T + T ++ L A KT RVP L+E Sbjct: 77 LYARVDNTAFRLLKNNTPGPYTFIFK--GTKEVPRRLMNAKRKTIGIRVPDNRIALDLLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL S G + + + + I++GG +G + T V E + Sbjct: 135 ALGEPLMSTSLILPGSDVTESDPEDIRDKLEHAVDCILNGGY--LGEQPTTVVDFSEDEP 192 Query: 190 RILRPG 195 I R G Sbjct: 193 VIARVG 198 >gi|284799516|ref|ZP_05984195.2| protein RimN [Neisseria subflava NJ9703] gi|284798106|gb|EFC53453.1| protein RimN [Neisseria subflava NJ9703] Length = 191 Score = 43.9 bits (102), Expect = 0.036, Method: Compositional matrix adjust. Identities = 47/196 (23%), Positives = 82/196 (41%), Gaps = 13/196 (6%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I + A R+ L G +A PTE+ YGL P A+ +L +KKRP + Sbjct: 3 MMFPRILSAAAQRRLQAHLKKGGLVAYPTESCYGLGCVPTLPKALNQLIHLKKRPQHKGM 62 Query: 61 ICHVSDIS----MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTA 115 I + ++++ + LH A WP P T +L + + P L Sbjct: 63 IVIGHSLEQLQPLLQRPSENIQTMLHEA---WPAPKTFLLP--AGKKVLPSLRGKRRSKL 117 Query: 116 CFRVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174 RVP ++L + PL S NR+G+ + + + +++ ++ G I K Sbjct: 118 AVRVPAHAGARRLCQVLEMPLVSTSCNRAGKRACKTEREV-RRQFGRKV-WVVGGLIGKQ 175 Query: 175 GLESTIVNVQCEKKVR 190 S I++ + ++R Sbjct: 176 KTPSQIIDGETGARLR 191 >gi|161870640|ref|YP_001599813.1| hypothetical protein NMCC_1710 [Neisseria meningitidis 053442] gi|161596193|gb|ABX73853.1| putative translation factor [Neisseria meningitidis 053442] Length = 206 Score = 43.9 bits (102), Expect = 0.036, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 11/114 (9%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E ++ G + PT++ Y L + A+ R+ I+K + L +D+S + Sbjct: 17 IKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLSELG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-----HPLSTANLKTACFRVP 120 +A +D + K PGP T +L +T D+ HP KT R+P Sbjct: 77 TYAKIDNVQFRQLKAATPGPYTFILQ--ATKDVPARTLHP----KRKTIGLRIP 124 >gi|163803031|ref|ZP_02196917.1| putative translation factor [Vibrio sp. AND4] gi|159173205|gb|EDP58034.1| putative translation factor [Vibrio sp. AND4] Length = 206 Score = 43.9 bits (102), Expect = 0.036, Method: Compositional matrix adjust. Identities = 44/186 (23%), Positives = 76/186 (40%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + G + PT++ Y L N A+ R+ +I++ + D+S + Sbjct: 17 INQAVAIIRNGGVVVYPTDSGYALGCQLENKQALERICQIRRLDDKHNFTLLCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD + L K PGP T + T ++ L A KT RVP L+E Sbjct: 77 LYARVDNSAFRLLKNNTPGPYTFIFK--GTKEVPRRLMNAKRKTIGIRVPDNRIALDLLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G P+ S G + + + + +I++GG +G + T V E + Sbjct: 135 ALGEPMMSTSLILPGSDVTESDPEDIRDKLEHAVDVILNGGY--LGEQPTTVIDFSEGEA 192 Query: 190 RILRPG 195 + R G Sbjct: 193 VVARVG 198 >gi|332290311|ref|YP_004421163.1| conserved hypothetical protein, yrdC domain protein [Gallibacterium anatis UMN179] gi|330433207|gb|AEC18266.1| conserved hypothetical protein, yrdC domain protein [Gallibacterium anatis UMN179] Length = 207 Score = 43.9 bits (102), Expect = 0.037, Method: Compositional matrix adjust. Identities = 55/197 (27%), Positives = 91/197 (46%), Gaps = 17/197 (8%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + L G I PT++ Y L + A+ R+ I+K P + SD+S + Sbjct: 17 INQAVDILRDGGVIVYPTDSGYALGCMLGDKHAMDRIIRIRKLPEGHNFTLVCSDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKKLIE 129 ++ V L K PG T +L +T ++ L T+ KT RVP L++ Sbjct: 77 NYSLVTNTIYRLIKNNTPGRYTFILT--ATKELPRRLMTSKRKTIGIRVPDNNIALALLK 134 Query: 130 TYGHPLAIPSANRSGQISIT-----NVKHILSSSICKEIPLIIDGGISKIGLE-STIVNV 183 T G P+ S G+ T ++++L + ++ LII GG +G + +T+V++ Sbjct: 135 TLGEPILSCSLMLPGEEYFTLSDPEEIRNLLEN----QVDLIIHGGY--LGQDPTTVVDL 188 Query: 184 QCEKKVRILRPGGLEIE 200 E V ILR G IE Sbjct: 189 TVEPPV-ILREGSGSIE 204 >gi|17227697|ref|NP_484245.1| hypothetical protein alr0201 [Nostoc sp. PCC 7120] gi|17135179|dbj|BAB77725.1| alr0201 [Nostoc sp. PCC 7120] Length = 219 Score = 43.9 bits (102), Expect = 0.038, Method: Compositional matrix adjust. Identities = 55/198 (27%), Positives = 90/198 (45%), Gaps = 20/198 (10%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L +G + PT+TVY + D +A+ R+ +IK+ PL +S V +A V Sbjct: 24 LSSGAVMLYPTDTVYAIGCDLNVKSAVERVRQIKQLANDKPLTFLCPSLSNVATYAFVSD 83 Query: 79 LSLHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVPC-GFTKKLIETYGHPL 135 + + K PG T LL T + P + + KT RVP L+E G+P+ Sbjct: 84 TAYRIMKRLIPGTYTF---LLPATKLVPRLVQSPKRKTTGIRVPNHTVCLALLEALGNPI 140 Query: 136 AIPSAN------RSGQI-----SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 SA+ +G++ SIT++ + + K + +I+D G STIV++ Sbjct: 141 ISTSAHIPPDEAGNGKVGIISESITSMVELF-DRVDKLVDVIVDTGQEPTYDVSTIVDLT 199 Query: 185 CEKKVRILRPG-GLEIET 201 ++ + I R G G E T Sbjct: 200 GDEPM-ITRQGLGWEAVT 216 >gi|325203543|gb|ADY98996.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis M01-240355] Length = 206 Score = 43.9 bits (102), Expect = 0.038, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 11/114 (9%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E ++ G + PT++ Y L + A+ R+ I+K + L +D+S + Sbjct: 17 IKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLSELG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-----HPLSTANLKTACFRVP 120 +A +D + K PGP T +L +T D+ HP KT R+P Sbjct: 77 TYAKIDNVQFRQLKAATPGPYTFILQ--ATKDVPARTLHP----KRKTIGLRIP 124 >gi|325128851|gb|EGC51710.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis N1568] gi|325142951|gb|EGC65309.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis 961-5945] Length = 206 Score = 43.9 bits (102), Expect = 0.038, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 11/114 (9%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E ++ G + PT++ Y L + A+ R+ I+K + L +D+S + Sbjct: 17 IKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLSELG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-----HPLSTANLKTACFRVP 120 +A +D + K PGP T +L +T D+ HP KT R+P Sbjct: 77 TYAKIDNVQFRQLKAATPGPYTFILQ--ATKDVPARTLHP----KRKTIGLRIP 124 >gi|238763131|ref|ZP_04624097.1| hypothetical protein ykris0001_40700 [Yersinia kristensenii ATCC 33638] gi|238698630|gb|EEP91381.1| hypothetical protein ykris0001_40700 [Yersinia kristensenii ATCC 33638] Length = 206 Score = 43.5 bits (101), Expect = 0.039, Method: Compositional matrix adjust. Identities = 43/186 (23%), Positives = 78/186 (41%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + ++ + L G + PT++ Y L + A+ R+ I++ + D+S + Sbjct: 17 INQSVDVLRKGGVVVYPTDSGYALGCRLEDKAAMERICRIRQLDGNHNFTLVCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD + L K PG T +L +T ++ L KT RVP L++ Sbjct: 77 TYAYVDNSAFRLIKNNTPGNYTFILK--ATKEVPRRLMNDKRKTIGLRVPSNPIALALLD 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL + G + + ++ K++ LII GG +G + T V + Sbjct: 135 VLGEPLMSTTLMLPGNDFAESDPEEIKENLGKQVDLIIHGG--SLGQQPTTVIDLTDSSP 192 Query: 190 RILRPG 195 ++R G Sbjct: 193 EVIREG 198 >gi|221135276|ref|ZP_03561579.1| Sua5/YciO/YrdC family protein [Glaciecola sp. HTCC2999] Length = 188 Score = 43.5 bits (101), Expect = 0.039, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 72/186 (38%), Gaps = 14/186 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L + + G I PTE V+GL D A+ + IK RP LI + + Sbjct: 9 LEQFISAFEQGEVIGYPTEAVFGLGCDPDIADAVNNVLAIKTRPQDKGLILIAATFEQLL 68 Query: 72 KH---ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-KL 127 + + ++P ++ WPGP T ++ TT + T T RV T L Sbjct: 69 PYIDISELEPEIINKVHATWPGPYTWIMPKAKTTPDY--LTGGRNTIAVRVSAHPTVIAL 126 Query: 128 IETYGHPLAIPSANRSGQI---SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 PL SAN SG+ ++ +K + +I IDG + S I + Sbjct: 127 CNAVNKPLVSTSANPSGETPARTLEQIKTYFADTI-----FAIDGEVDHNAQPSKIQDAV 181 Query: 185 CEKKVR 190 K +R Sbjct: 182 TGKVLR 187 >gi|113460885|ref|YP_718952.1| translation factor SUA5 [Haemophilus somnus 129PT] gi|170717433|ref|YP_001784533.1| Sua5/YciO/YrdC/YwlC family protein [Haemophilus somnus 2336] gi|112822928|gb|ABI25017.1| translation factor SUA5 [Haemophilus somnus 129PT] gi|168825562|gb|ACA30933.1| Sua5/YciO/YrdC/YwlC family protein [Haemophilus somnus 2336] Length = 207 Score = 43.5 bits (101), Expect = 0.039, Method: Compositional matrix adjust. Identities = 54/199 (27%), Positives = 84/199 (42%), Gaps = 17/199 (8%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S + +A E L G I PT++ Y L + A+ R+ +I++ P + SD+S Sbjct: 14 SRLINQAVEILRQGGVIVYPTDSGYALGCMIGDKHAMDRIVKIRQLPEGHNFTLVCSDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVPCG-FTK 125 + ++ V+ L K PG T + LS T P L T+ KT RVP Sbjct: 74 ELSTYSVVNNSVYRLIKNNTPGRYTFI---LSATKELPRRLMTSKRKTIGIRVPDNQIAL 130 Query: 126 KLIETYGHP-----LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L+++ G P L +P + Q ++ L ++ LII GG + + T Sbjct: 131 DLLKSLGEPILSCSLMLPGEEYTTQSDPEEIRDRLE----HQVDLIIHGGY--LSQQPTT 184 Query: 181 VNVQCEKKVRILRPGGLEI 199 V E ILR G +I Sbjct: 185 VVDLTEDNPVILREGSGDI 203 >gi|59801858|ref|YP_208570.1| hypothetical protein NGO1520 [Neisseria gonorrhoeae FA 1090] gi|194099331|ref|YP_002002431.1| hypothetical protein NGK_1806 [Neisseria gonorrhoeae NCCP11945] gi|254494302|ref|ZP_05107473.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|268595399|ref|ZP_06129566.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268599438|ref|ZP_06133605.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268601955|ref|ZP_06136122.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|268604284|ref|ZP_06138451.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268682743|ref|ZP_06149605.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268684847|ref|ZP_06151709.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|268687170|ref|ZP_06154032.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] gi|291043170|ref|ZP_06568893.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|293398503|ref|ZP_06642681.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria gonorrhoeae F62] gi|59718753|gb|AAW90158.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090] gi|193934621|gb|ACF30445.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945] gi|226513342|gb|EEH62687.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|268548788|gb|EEZ44206.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268583569|gb|EEZ48245.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268586086|gb|EEZ50762.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|268588415|gb|EEZ53091.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268623027|gb|EEZ55427.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268625131|gb|EEZ57531.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|268627454|gb|EEZ59854.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] gi|291012776|gb|EFE04759.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|291610974|gb|EFF40071.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria gonorrhoeae F62] gi|317164837|gb|ADV08378.1| hypothetical protein NGTW08_1416 [Neisseria gonorrhoeae TCDC-NG08107] Length = 234 Score = 43.5 bits (101), Expect = 0.039, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 11/114 (9%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E ++ G + PT++ Y L + A+ R+ I+K + L +D+S + Sbjct: 45 IKQAVEIINQGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLSELG 104 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD-----IHPLSTANLKTACFRVP 120 +A +D + K PGP T +L +T D +HP KT R+P Sbjct: 105 TYAKIDNVQFRQLKAATPGPYTFILQ--ATKDAPARALHP----KRKTIGLRIP 152 >gi|332290736|ref|YP_004429345.1| Sua5/YciO/YrdC/YwlC family protein [Krokinobacter diaphorus 4H-3-7-5] gi|332168822|gb|AEE18077.1| Sua5/YciO/YrdC/YwlC family protein [Krokinobacter diaphorus 4H-3-7-5] Length = 205 Score = 43.5 bits (101), Expect = 0.040, Method: Compositional matrix adjust. Identities = 45/190 (23%), Positives = 83/190 (43%), Gaps = 13/190 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK---RPAMNPLICHVSDIS 68 L++ + L G I P++TVY L D N A+ R+ +IK A +C D+S Sbjct: 17 LQEIVKILKNGGLIIYPSDTVYALGCDITNTKALERVAQIKGVKLAKANFSFVCE--DLS 74 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + + +D + + K PGP T + L + P K RVP T+ Sbjct: 75 NLSDYVKQIDTQTFKILKRALPGPYTFI---LPGNNNLPSVFKKKKEVGIRVPDNEITRA 131 Query: 127 LIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 ++ G+P+ S + I T ++ + +I+DGG + ST++++ Sbjct: 132 IVRALGNPIISTSIYDEDEVIEYTTDPELIFEKWQNRVDVIVDGGYGG-NIPSTVIDLTG 190 Query: 186 EKKVRILRPG 195 ++ + ++R G Sbjct: 191 DEPI-LIREG 199 >gi|254805532|ref|YP_003083753.1| putative translation factor [Neisseria meningitidis alpha14] gi|254669074|emb|CBA07599.1| putative translation factor [Neisseria meningitidis alpha14] Length = 206 Score = 43.5 bits (101), Expect = 0.040, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 11/114 (9%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E ++ G + PT++ Y L + A+ R+ I+K + L +D+S + Sbjct: 17 IKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLSELG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-----HPLSTANLKTACFRVP 120 +A +D + K PGP T +L +T D+ HP KT R+P Sbjct: 77 TYAKIDNVQFRQLKAATPGPYTFILQ--ATKDVPARTLHP----KRKTIGLRIP 124 >gi|268597262|ref|ZP_06131429.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268551050|gb|EEZ46069.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] Length = 234 Score = 43.5 bits (101), Expect = 0.040, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 11/114 (9%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E ++ G + PT++ Y L + A+ R+ I+K + L +D+S + Sbjct: 45 IKQAVEIINQGGVVVYPTDSCYALGCKLGDKVAMERILSIRKIDLKHHLTLMCADLSELG 104 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD-----IHPLSTANLKTACFRVP 120 +A +D + K PGP T +L +T D +HP KT R+P Sbjct: 105 TYAKIDNVQFRQLKAATPGPYTFILQ--ATKDAPARALHP----KRKTIGLRIP 152 >gi|262199867|ref|YP_003271076.1| Sua5/YciO/YrdC/YwlC family protein [Haliangium ochraceum DSM 14365] gi|262083214|gb|ACY19183.1| Sua5/YciO/YrdC/YwlC family protein [Haliangium ochraceum DSM 14365] Length = 208 Score = 43.5 bits (101), Expect = 0.040, Method: Compositional matrix adjust. Identities = 50/194 (25%), Positives = 77/194 (39%), Gaps = 22/194 (11%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A + L G A PT++ Y L A R+Y+ K + + DI+ Sbjct: 17 IQQAVDILHRGGVAAYPTDSCYALGCAIEAKQAALRIYQAKSMSQNHRMALICPDIASAS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKKLIE 129 ++ L+ LAK +PGP TLVL +T ++ L +TA R+ + L+ Sbjct: 77 EYVHFSQLAYKLAKRIFPGPYTLVLP--ATREVPKLVIDKKQRTAGIRITSNPVAQALVN 134 Query: 130 TYGHPLAIPSA---NRSGQI-----SITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 G PL +A + G +I HIL + E P G E T V Sbjct: 135 ALGRPLLTSTAILPDEDGACIDADETIDAFGHILDVVVDSESP----------GDEPTTV 184 Query: 182 NVQCEKKVRILRPG 195 V +LR G Sbjct: 185 VEVAGNDVNVLREG 198 >gi|37523508|ref|NP_926885.1| hypothetical protein gll3939 [Gloeobacter violaceus PCC 7421] gi|35214512|dbj|BAC91880.1| gll3939 [Gloeobacter violaceus PCC 7421] Length = 223 Score = 43.5 bits (101), Expect = 0.041, Method: Compositional matrix adjust. Identities = 54/199 (27%), Positives = 87/199 (43%), Gaps = 20/199 (10%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L + + L AG + PT+T Y + D + AI R+ IK+ PL +S V Sbjct: 17 LGRIVQALRAGAVLLYPTDTTYAIGCDLLHKGAIERVQRIKRLSNDKPLTFLCPSLSNVA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK--TACFRVPCG-FTKKLI 128 +A V + L + PGP T LL T P + K T RVP + L+ Sbjct: 77 TYARVGDDAYRLMRHLLPGPYTF---LLPATRALPKLVLDPKRRTTGIRVPDHPLCQALL 133 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI-----SKIGL----EST 179 G+PL I ++ RS S ++ L ++ ++DG + ++ GL ST Sbjct: 134 AGLGNPL-ISTSARSADGSEIRYEYELFEALAP----VVDGIVELDPPAQDGLLLTQVST 188 Query: 180 IVNVQCEKKVRILRPGGLE 198 ++++ E+ V + R G E Sbjct: 189 VIDLSGEQPVVVRRGLGWE 207 >gi|192360293|ref|YP_001984039.1| Sua5/YciO/YrdC/YwlC family protein [Cellvibrio japonicus Ueda107] gi|190686458|gb|ACE84136.1| Sua5/YciO/YrdC/YwlC family protein [Cellvibrio japonicus Ueda107] Length = 233 Score = 43.5 bits (101), Expect = 0.042, Method: Compositional matrix adjust. Identities = 37/145 (25%), Positives = 61/145 (42%), Gaps = 10/145 (6%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A + G IA PTE V+GL + + A+ L +K+RP +I +++ ++ Sbjct: 57 AANMMRQGGVIAYPTEAVWGLGCNPFDEDAVADLLALKQRPVEKGVILIAANLQQIEPFI 116 Query: 75 S-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRV---PCGFTKKLIE 129 +D L K WPGP+T L+ + P T + RV P L Sbjct: 117 DHLDDLQRQRLKNTWPGPVTW---LVPNNGLAPHWITGAFPSVALRVTDHPV--AAGLCR 171 Query: 130 TYGHPLAIPSANRSGQISITNVKHI 154 +G P+ S N +G+ N+ + Sbjct: 172 AFGGPVVSTSCNPAGKPPARNIHEV 196 >gi|240081150|ref|ZP_04725693.1| hypothetical protein NgonF_07548 [Neisseria gonorrhoeae FA19] Length = 206 Score = 43.5 bits (101), Expect = 0.042, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 11/114 (9%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E ++ G + PT++ Y L + A+ R+ I+K + L +D+S + Sbjct: 17 IKQAVEIINQGGVVVYPTDSCYALGCKLGDKVAMERILSIRKIDLKHHLTLMCADLSELG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD-----IHPLSTANLKTACFRVP 120 +A +D + K PGP T +L +T D +HP KT R+P Sbjct: 77 TYAKIDNVQFRQLKAATPGPYTFILQ--ATKDAPARALHP----KRKTIGLRIP 124 >gi|197119503|ref|YP_002139930.1| hydrogenase maturation protein HypF [Geobacter bemidjiensis Bem] gi|197088863|gb|ACH40134.1| hydrogenase maturation protein HypF [Geobacter bemidjiensis Bem] Length = 758 Score = 43.5 bits (101), Expect = 0.042, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 4/138 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +AL+ A E L G +A+ Y LAVD+ N A+ RL + K+R P +D+ Sbjct: 201 GDALKLALEALSQGKIVAVKGVGGYHLAVDAGNQAAVERLRQRKRRDE-KPFAMLAADLE 259 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128 MV++HA L L L P+ L+ L ++ I L F +P + L+ Sbjct: 260 MVRRHAHCSELEGRLL-LGVERPIVLMRKLAGSS-ISDLVAPGNGWFGFMLPGNPLQHLL 317 Query: 129 -ETYGHPLAIPSANRSGQ 145 +G PL + S N S + Sbjct: 318 ARGHGAPLVMTSGNLSDE 335 >gi|208780526|ref|ZP_03247866.1| Sua5/YciO/YrdC/YwlC family protein [Francisella novicida FTG] gi|254372431|ref|ZP_04987921.1| hypothetical protein FTCG_01656 [Francisella tularensis subsp. novicida GA99-3549] gi|151570159|gb|EDN35813.1| hypothetical protein FTCG_01656 [Francisella novicida GA99-3549] gi|208743672|gb|EDZ89976.1| Sua5/YciO/YrdC/YwlC family protein [Francisella novicida FTG] Length = 204 Score = 43.5 bits (101), Expect = 0.043, Method: Compositional matrix adjust. Identities = 50/191 (26%), Positives = 84/191 (43%), Gaps = 6/191 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++ LD IAIPT++ Y LA ++ I ++ +I+ + + D+S + Sbjct: 17 LKELANILDNDGVIAIPTDSGYALACRMKSKKGIDKIIKIRNLDSSHNFTLCCKDLSEIS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCGFTKKLIET 130 ++A VD + L K + PGP T +L+ +T + L T + T RV + + I Sbjct: 77 EYAKVDNNAYRLLKRYTPGPYTFILN--ATKKVSSLLVTKSKNTVGIRVSEHYVPRAISA 134 Query: 131 -YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL I S G + + S I + +++ G + T V E Sbjct: 135 EIGEPLVISSFIVPGHQHVVTDCAEVDSQIMNYLDAVVES--DYCGYDPTTVVELLELPY 192 Query: 190 RILRPGGLEIE 200 +ILR G EI+ Sbjct: 193 QILRQGAGEID 203 >gi|87120381|ref|ZP_01076276.1| hypothetical protein MED121_09318 [Marinomonas sp. MED121] gi|86164484|gb|EAQ65754.1| hypothetical protein MED121_09318 [Marinomonas sp. MED121] Length = 185 Score = 43.5 bits (101), Expect = 0.043, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 28/50 (56%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 + L G IA PTE V+GL D +N TA+ +L EIK RP +I D Sbjct: 12 DLLKRGGIIAYPTEAVWGLGCDPQNQTAVIKLLEIKSRPMNKGMILAAGD 61 >gi|218768797|ref|YP_002343309.1| hypothetical protein NMA2049 [Neisseria meningitidis Z2491] gi|121052805|emb|CAM09152.1| conserved hypothetical protein [Neisseria meningitidis Z2491] gi|319411036|emb|CBY91436.1| conserved hypothetical protein [Neisseria meningitidis WUE 2594] Length = 206 Score = 43.5 bits (101), Expect = 0.043, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 11/114 (9%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E ++ G + PT++ Y L + A+ R+ I+K + L +D+S + Sbjct: 17 IKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLSELG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-----HPLSTANLKTACFRVP 120 +A +D + K PGP T +L +T D+ HP KT R+P Sbjct: 77 TYAKIDNVQFRQLKAATPGPYTFILQ--ATKDVPARTLHP----KRKTIGLRIP 124 >gi|15806862|ref|NP_295585.1| SUA5-like protein [Deinococcus radiodurans R1] gi|6459642|gb|AAF11415.1|AE002026_3 SUA5-related protein [Deinococcus radiodurans R1] Length = 230 Score = 43.5 bits (101), Expect = 0.043, Method: Compositional matrix adjust. Identities = 60/194 (30%), Positives = 79/194 (40%), Gaps = 12/194 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 LR A + LD G +A PTETV+GLA A LY K R A PL + Sbjct: 23 LRAAADVLDRGGVVAYPTETVWGLAARP---AAAAELYRRKGREANKPLQLSCPGAAAAL 79 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVL----DLLSTTDIHPLSTANLKTACFRVPC-GFTKK 126 A P L L+ WPGPLT+V + L + A RVP Sbjct: 80 ALAVPSPALLALSAC-WPGPLTVVTPGRPERLEDWGAGAEAVAPDGWLGLRVPAHPVALA 138 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICK-EIPLIIDGGISKIGLESTIVNV-- 183 L+ G PLA S N SGQ + T + ++ +P ST++ + Sbjct: 139 LLSAAGGPLATTSLNPSGQAAATTQAEAEAYALADLTLPEPAGTADRPPAAPSTVLRLPA 198 Query: 184 QCEKKVRILRPGGL 197 + E R+LR GGL Sbjct: 199 EGEDTARMLRLGGL 212 >gi|172039116|ref|YP_001805617.1| putative YrdC-like RNA-binding protein [Cyanothece sp. ATCC 51142] gi|171700570|gb|ACB53551.1| putative YrdC-like RNA-binding protein [Cyanothece sp. ATCC 51142] Length = 199 Score = 43.5 bits (101), Expect = 0.044, Method: Compositional matrix adjust. Identities = 53/189 (28%), Positives = 81/189 (42%), Gaps = 26/189 (13%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHL- 83 I+ PT+TV LA P + ++ K+RP PLI S + K+ P + Sbjct: 19 ISFPTDTVPALAA---LPESASLIFATKQRPPDKPLILMGSSSDAIWKYVKGTPQEFEIW 75 Query: 84 ---AKLFWPGPLTLVLDLLSTTDIHPLSTANLK--TACFRVPCGFTKKLIETYGHPLAIP 138 K +WPG LTLV L ++ P + L+ T R+P + I LA Sbjct: 76 EKVVKQYWPGQLTLV---LPASEWVPKAMNPLEPTTIGVRIPNSIIAQNILKQTGCLATT 132 Query: 139 SANRSGQISITNVKHILSSSICKEIP--LIIDGGISK------IGLESTIVNVQCEKKVR 190 SAN SG+ I + S I P L+++ + K GL ST+ + + Sbjct: 133 SANLSGEPPIETL-----SEIAANFPDVLVLNEEVLKNQKKYGSGLPSTVAK-WTDTDWK 186 Query: 191 ILRPGGLEI 199 ILR G +++ Sbjct: 187 ILRQGSIKL 195 >gi|163788700|ref|ZP_02183145.1| translation factor [Flavobacteriales bacterium ALC-1] gi|159875937|gb|EDP69996.1| translation factor [Flavobacteriales bacterium ALC-1] Length = 206 Score = 43.5 bits (101), Expect = 0.044, Method: Compositional matrix adjust. Identities = 55/199 (27%), Positives = 85/199 (42%), Gaps = 15/199 (7%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIK--KRPAMN-PLICHVSDI 67 A++ L G I PT+TVYGL D N A+ R+ IK K N +C D+ Sbjct: 16 AIQNVVNVLKRGGLIIYPTDTVYGLGCDITNIKALERIAIIKGVKLEKSNFSFVCE--DL 73 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125 S + + +D + + K PG T + L + P KT RVP Sbjct: 74 SNLSDYVKQIDTRTFKILKRALPGAYTFI---LPGSKNLPNPFKKRKTVGIRVPDNSIAL 130 Query: 126 KLIETYGHPLAIPSA-NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNV 183 L+E G+P+ S + I T ++ + L+IDGG G E STI+++ Sbjct: 131 ALVEALGNPIVSTSIRDEDDVIEYTTDPELILEKWDDLVDLVIDGGYG--GNEASTIIDL 188 Query: 184 QCEKKVRILRPGGLEIETL 202 + + I+R G ++E Sbjct: 189 SEDDPI-IVREGKGDLEIF 206 >gi|239999590|ref|ZP_04719514.1| hypothetical protein Ngon3_08918 [Neisseria gonorrhoeae 35/02] gi|240014764|ref|ZP_04721677.1| hypothetical protein NgonD_08995 [Neisseria gonorrhoeae DGI18] gi|240017213|ref|ZP_04723753.1| hypothetical protein NgonFA_08608 [Neisseria gonorrhoeae FA6140] gi|240113362|ref|ZP_04727852.1| hypothetical protein NgonM_07292 [Neisseria gonorrhoeae MS11] gi|240116290|ref|ZP_04730352.1| hypothetical protein NgonPID1_08647 [Neisseria gonorrhoeae PID18] gi|240118578|ref|ZP_04732640.1| hypothetical protein NgonPID_08974 [Neisseria gonorrhoeae PID1] gi|240121287|ref|ZP_04734249.1| hypothetical protein NgonPI_05870 [Neisseria gonorrhoeae PID24-1] gi|240124121|ref|ZP_04737077.1| hypothetical protein NgonP_09310 [Neisseria gonorrhoeae PID332] gi|240126263|ref|ZP_04739149.1| hypothetical protein NgonSK_08652 [Neisseria gonorrhoeae SK-92-679] gi|240128790|ref|ZP_04741451.1| hypothetical protein NgonS_09224 [Neisseria gonorrhoeae SK-93-1035] gi|260439893|ref|ZP_05793709.1| hypothetical protein NgonDG_02184 [Neisseria gonorrhoeae DGI2] Length = 206 Score = 43.5 bits (101), Expect = 0.045, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 11/114 (9%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E ++ G + PT++ Y L + A+ R+ I+K + L +D+S + Sbjct: 17 IKQAVEIINQGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLSELG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD-----IHPLSTANLKTACFRVP 120 +A +D + K PGP T +L +T D +HP KT R+P Sbjct: 77 TYAKIDNVQFRQLKAATPGPYTFILQ--ATKDAPARALHP----KRKTIGLRIP 124 >gi|319639149|ref|ZP_07993903.1| hypothetical protein HMPREF0604_01527 [Neisseria mucosa C102] gi|317399588|gb|EFV80255.1| hypothetical protein HMPREF0604_01527 [Neisseria mucosa C102] Length = 206 Score = 43.5 bits (101), Expect = 0.046, Method: Compositional matrix adjust. Identities = 50/197 (25%), Positives = 82/197 (41%), Gaps = 21/197 (10%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A + + +G I PT++ Y L + TA+ R+ I+K + L +D+S + Sbjct: 17 IKQAADIVRSGGVIVYPTDSCYALGCKLGDKTAMERILTIRKIDQKHHLTLMCADLSELG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDL---LSTTDIHPLSTANLKTACFRVPCGFTK-KL 127 +A VD K PG T +L + +HP KT RVP T L Sbjct: 77 TYAKVDNAQFRQLKAATPGSYTFILQATKEVPNRTLHP----KRKTIGLRVPDNATALAL 132 Query: 128 IETYGHP-----LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 ++ G P L +P +T+ I + + L+IDGG G E T V Sbjct: 133 LQELGEPILSCTLMLPEDEE----PLTDPYEI-RDRLEHAVDLVIDGGWC--GTEPTTV- 184 Query: 183 VQCEKKVRILRPGGLEI 199 + ++R G +I Sbjct: 185 IDMTDGTELIRQGKGDI 201 >gi|238788419|ref|ZP_04632212.1| hypothetical protein yfred0001_830 [Yersinia frederiksenii ATCC 33641] gi|238723332|gb|EEQ14979.1| hypothetical protein yfred0001_830 [Yersinia frederiksenii ATCC 33641] Length = 206 Score = 43.5 bits (101), Expect = 0.046, Method: Compositional matrix adjust. Identities = 43/186 (23%), Positives = 78/186 (41%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + ++ + L G + PT++ Y L + +A+ R+ I++ + D+S + Sbjct: 17 INQSVDVLRKGGVVVYPTDSGYALGCRLEDKSAMERICRIRQLDGNHNFTLVCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD + L K PG T +L +T ++ L KT RVP L++ Sbjct: 77 TYAYVDNSAFRLIKNNTPGNYTFILK--ATKEVPRRLMNDKRKTIGLRVPSNPIALALLD 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL + G + + + K++ LII GG +G + T V + Sbjct: 135 VLGEPLMSTTLMLPGNDFAESDPEEIKEHLGKQVDLIIHGG--SLGQQPTTVIDLTDSSP 192 Query: 190 RILRPG 195 ++R G Sbjct: 193 EVIREG 198 >gi|325282693|ref|YP_004255234.1| SUA5/yciO/yrdC domain-containing protein [Deinococcus proteolyticus MRP] gi|324314502|gb|ADY25617.1| SUA5/yciO/yrdC domain protein [Deinococcus proteolyticus MRP] Length = 228 Score = 43.5 bits (101), Expect = 0.048, Method: Compositional matrix adjust. Identities = 48/180 (26%), Positives = 70/180 (38%), Gaps = 9/180 (5%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 +A PTETV+GL L K R + + A P L Sbjct: 38 VAFPTETVWGLGAPPTQ-EGWEALIRAKGRDPKQAFQVSCASPQLALAWAQ-HPDLLRPL 95 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANRS 143 FWPGPLTLV+ + P A RVP + L+ G L S N S Sbjct: 96 TAFWPGPLTLVVQARAGL---PEYLAPGGWVGLRVPAHPAAQALLHGSGGRLLTSSLNLS 152 Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203 GQ + + + +++ + DGG G ST++ V E + +LR G L + ++ Sbjct: 153 GQPVARSEAEARALGLAEQV--LGDGGQPPSGEASTVLRV-SETGLDVLRAGALRLADIR 209 >gi|83642946|ref|YP_431381.1| putative translation factor (SUA5) [Hahella chejuensis KCTC 2396] gi|123535430|sp|Q2SQW8|RIMN_HAHCH RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|83630989|gb|ABC26956.1| putative translation factor (SUA5) [Hahella chejuensis KCTC 2396] Length = 184 Score = 43.5 bits (101), Expect = 0.048, Method: Compositional matrix adjust. Identities = 42/163 (25%), Positives = 65/163 (39%), Gaps = 7/163 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 ++KA L G +A PTE V+GL D A+ R+ ++K+RP LI I Sbjct: 6 IQKAVSVLSRGGVLAYPTEAVWGLGCDPSCEDAVNRILQLKRRPWRKGLILVSGQIEHFS 65 Query: 72 KHASVDPLSLHLAKL-FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P L WPGP+T V+ PL RV +L + Sbjct: 66 QLLDRLPQQQKDQILATWPGPVTWVVP--DPGVYAPLVRGAHDAIAIRVTAHPLVVELTK 123 Query: 130 TYGHPLAIPSAN---RSGQISITNVKHILSSSICKEIPLIIDG 169 +G P+ SAN R ++ + + S + +P + G Sbjct: 124 AFGGPIVSTSANPATREPARTLFDCRRYFKSGVDHYLPGKLSG 166 >gi|224826312|ref|ZP_03699414.1| Sua5/YciO/YrdC/YwlC family protein [Lutiella nitroferrum 2002] gi|224601413|gb|EEG07594.1| Sua5/YciO/YrdC/YwlC family protein [Lutiella nitroferrum 2002] Length = 206 Score = 43.5 bits (101), Expect = 0.048, Method: Compositional matrix adjust. Identities = 46/188 (24%), Positives = 79/188 (42%), Gaps = 11/188 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +R+A + L AG I PT++ Y L + A+ R+ +I++ + L +D+S + Sbjct: 17 IREAVKILRAGGVIVYPTDSCYALGCLLGDKAAMERILDIRQLDLKHHLTLVCADLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDL---LSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 +A VD K PG T +L + +HP T RVP L Sbjct: 77 NYARVDNSQFRQLKAATPGSYTFILQASKEVPRRTLHP----KRATIGLRVPEHPVALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G P+ + + G + + + +++ L+IDGG G E T V + Sbjct: 133 LAELGEPILSCTLSLPGDSEALTDPYEIRERMERQVDLVIDGGWC--GTEPTTV-IDLTD 189 Query: 188 KVRILRPG 195 V ++R G Sbjct: 190 GVELVRRG 197 >gi|332161875|ref|YP_004298452.1| hypothetical protein YE105_C2253 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325666105|gb|ADZ42749.1| hypothetical protein YE105_C2253 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330860991|emb|CBX71264.1| uncharacterized protein yciO [Yersinia enterocolitica W22703] Length = 206 Score = 43.5 bits (101), Expect = 0.049, Method: Compositional matrix adjust. Identities = 44/186 (23%), Positives = 78/186 (41%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + ++ + L G + PT++ Y L + TA+ R+ I++ + D+S + Sbjct: 17 INQSVDVLRKGGVVVYPTDSGYALGCRLEDKTAMERICRIRQLDGNHNFTLVCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD + L K PG T +L +T ++ L KT RVP L++ Sbjct: 77 TYAYVDNPAFRLIKNNTPGNYTFILK--ATKEVPRRLMNDKRKTIGLRVPSNPIALALLD 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL + G + + + K++ LII GG +G + T V + Sbjct: 135 VLGEPLMSTTLMLPGNDFAESDPEEIKEHLGKQVDLIIHGG--SLGQQPTTVIDLTDSSP 192 Query: 190 RILRPG 195 ++R G Sbjct: 193 EVIRVG 198 >gi|319638767|ref|ZP_07993526.1| hypothetical protein HMPREF0604_01150 [Neisseria mucosa C102] gi|317400008|gb|EFV80670.1| hypothetical protein HMPREF0604_01150 [Neisseria mucosa C102] Length = 212 Score = 43.5 bits (101), Expect = 0.049, Method: Compositional matrix adjust. Identities = 44/193 (22%), Positives = 80/193 (41%), Gaps = 7/193 (3%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I + A R+ L G +A PTE+ YGL P A+ +L +KKRP + Sbjct: 24 MMFPRILSAAAQRRLQAHLKKGGLVAYPTESCYGLGCIPTLPKALNQLIHLKKRPQHKGM 83 Query: 61 ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFR 118 I + ++ ++ + + WP P T +L + + P L R Sbjct: 84 IVIGHSLEQLQPLLQRPSENIQTMLREAWPAPKTFLLP--AGKKVLPSLRGKRRSKLAVR 141 Query: 119 VPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 VP ++L + PL S NR+G+ + + + +++ ++ G I K Sbjct: 142 VPAHAGARRLCQVLEMPLVSTSCNRAGKRACKTEREV-RRQFGRKV-WVVGGLIGKQKTP 199 Query: 178 STIVNVQCEKKVR 190 S I++ + ++R Sbjct: 200 SQIIDGETGARLR 212 >gi|124267942|ref|YP_001021946.1| hypothetical protein Mpe_A2757 [Methylibium petroleiphilum PM1] gi|124260717|gb|ABM95711.1| conserved hypothetical protein [Methylibium petroleiphilum PM1] Length = 209 Score = 43.5 bits (101), Expect = 0.050, Method: Compositional matrix adjust. Identities = 49/187 (26%), Positives = 85/187 (45%), Gaps = 5/187 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++A + L G AIPT++ Y L + A L I+ + L D+S + Sbjct: 17 LKQAVQILHGGGIAAIPTDSSYALVCHLDDKAAAESLRRIRGVDDKHHLTLLCRDLSELA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKKLIE 129 +A VD L KL PGP T +L+ +T ++ +S + +T RVP T+ L+E Sbjct: 77 NYARVDNRQYRLLKLGTPGPYTFILE--ATKEVPRRVSHPSRRTIGLRVPEHAVTQALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL + + N H + K++ I+D G + +T++++ ++ V Sbjct: 135 LLGQPLLATTLIPPNEAEALNDPHEIRQRFEKQLQAIVDAGACPMQ-PTTVIDLSGDETV 193 Query: 190 RILRPGG 196 + R G Sbjct: 194 LVRRGSG 200 >gi|312111086|ref|YP_003989402.1| (NiFe) hydrogenase maturation protein HypF [Geobacillus sp. Y4.1MC1] gi|311216187|gb|ADP74791.1| (NiFe) hydrogenase maturation protein HypF [Geobacillus sp. Y4.1MC1] Length = 758 Score = 43.5 bits (101), Expect = 0.050, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 81/178 (45%), Gaps = 14/178 (7%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D +A+ KA + L +G +AI Y LA D+ N A+++L K+RP PL + + Sbjct: 198 DGDAIDKAKQLLLSGAIVAIKGLGGYHLACDATNEQAVQQLRTRKQRPT-RPLAVMAASL 256 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 S+VK+ V+ + L P +VL +T + P LKT +P L Sbjct: 257 SVVKQMCEVNDEEKRV--LTSPEAPIVVLKRKTTYPLAPSLAPGLKTVGVMLPYTPLHHL 314 Query: 128 IETYGH--PLAIPSANRSG-------QISITNVKHILSSSICKEIPLI--IDGGISKI 174 + H L + SANRSG + ++ ++K I + P++ ID + +I Sbjct: 315 LLDEEHIPVLVMTSANRSGVPILYKDEQALQDLKSIADYFLVHNRPIVHPIDDSVVQI 372 >gi|295400387|ref|ZP_06810366.1| SUA5/yciO/yrdC domain protein [Geobacillus thermoglucosidasius C56-YS93] gi|294977662|gb|EFG53261.1| SUA5/yciO/yrdC domain protein [Geobacillus thermoglucosidasius C56-YS93] Length = 497 Score = 43.1 bits (100), Expect = 0.050, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 81/178 (45%), Gaps = 14/178 (7%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D +A+ KA + L +G +AI Y LA D+ N A+++L K+RP PL + + Sbjct: 198 DGDAIDKAKQLLLSGAIVAIKGLGGYHLACDATNEQAVQQLRTRKQRPT-RPLAVMAASL 256 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 S+VK+ V+ + L P +VL +T + P LKT +P L Sbjct: 257 SVVKQMCEVNDEEKRV--LTSPEAPIVVLKRKTTYPLAPSLAPGLKTVGVMLPYTPLHHL 314 Query: 128 IETYGH--PLAIPSANRSG-------QISITNVKHILSSSICKEIPLI--IDGGISKI 174 + H L + SANRSG + ++ ++K I + P++ ID + +I Sbjct: 315 LLDEEHIPVLVMTSANRSGVPILYKDEQALQDLKSIADYFLVHNRPIVHPIDDSVVQI 372 >gi|291279580|ref|YP_003496415.1| hypothetical protein DEFDS_1190 [Deferribacter desulfuricans SSM1] gi|290754282|dbj|BAI80659.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1] Length = 203 Score = 43.1 bits (100), Expect = 0.051, Method: Compositional matrix adjust. Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 3/76 (3%) Query: 24 PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHL 83 P PT+T+YG+ N A ++YEIKKR I + + + + Sbjct: 24 PFIYPTDTIYGIGASYLNEEANNKIYEIKKRDKGKTFITLIGSVKQLYDLIDRSFFTNTH 83 Query: 84 AKL---FWPGPLTLVL 96 K+ FWPG T + Sbjct: 84 EKIINRFWPGSFTFIF 99 >gi|261416990|ref|YP_003250673.1| Sua5/YciO/YrdC/YwlC family protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373446|gb|ACX76191.1| Sua5/YciO/YrdC/YwlC family protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326738|gb|ADL25939.1| Sua5/YciO/YrdC/YwlC family protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 195 Score = 43.1 bits (100), Expect = 0.051, Method: Compositional matrix adjust. Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 7/137 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E L+ + PTE+ Y + ++ + AI +LY +KK + V DI Sbjct: 15 VKQAAEILEDDGLVLYPTESGYAIGCNAESSKAIHKLYALKKPMKKFFMALIVPDIRFAT 74 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK--TACFRVPCG-FTKKLI 128 +A V + ++ K PGP T +L D H ++K R+P F K+L Sbjct: 75 GYAHVSNFAFNIIKQRVPGPYTFIL----PADPHIARKLDVKRPEIGIRIPTHPFFKELF 130 Query: 129 ETYGHPLAIPSANRSGQ 145 + + P+ +A S + Sbjct: 131 QHFDKPILSTAAKLSEE 147 >gi|297832740|ref|XP_002884252.1| yrdC family protein [Arabidopsis lyrata subsp. lyrata] gi|297330092|gb|EFH60511.1| yrdC family protein [Arabidopsis lyrata subsp. lyrata] Length = 305 Score = 43.1 bits (100), Expect = 0.052, Method: Compositional matrix adjust. Identities = 35/101 (34%), Positives = 45/101 (44%), Gaps = 16/101 (15%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL--ICH-V 64 DS L+ E L G IPT+TVY L D +N +A+ RL IKK + PL +C + Sbjct: 77 DSWKLQPVIELLKQGAVGVIPTDTVYALVCDCKNHSAVERLRRIKKIESSKPLSILCRSL 136 Query: 65 SDISM---------VKKHASVDPLSLHLAKLFWPGPLTLVL 96 DI HA+V K PGP T +L Sbjct: 137 RDIDTFTMGFPRGDAHGHANV----FRAVKQCLPGPYTFIL 173 >gi|269213846|ref|ZP_05982985.2| Sua5/YciO/YrdC/YwlC family protein [Neisseria cinerea ATCC 14685] gi|269145185|gb|EEZ71603.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria cinerea ATCC 14685] Length = 213 Score = 43.1 bits (100), Expect = 0.052, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 11/114 (9%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E ++ G + PT++ Y L + A+ R+ I+K + L +D+S + Sbjct: 24 IKQAVEIINQGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDQKHHLTLVCADLSELG 83 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-----HPLSTANLKTACFRVP 120 +A +D + K PGP T +L +T D+ HP KT R+P Sbjct: 84 SYAKIDNVQFRQLKAATPGPYTCILQ--ATKDVPARTLHP----KRKTIGLRIP 131 >gi|148654173|ref|YP_001281266.1| SUA5/yciO/yrdC domain-containing protein [Psychrobacter sp. PRwf-1] gi|148573257|gb|ABQ95316.1| SUA5/yciO/yrdC, N-terminal domain [Psychrobacter sp. PRwf-1] Length = 262 Score = 43.1 bits (100), Expect = 0.052, Method: Compositional matrix adjust. Identities = 18/59 (30%), Positives = 33/59 (55%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +A ++L G +A PTE+V+G+ D+ N A+ ++ IK RP+ +I I ++ Sbjct: 30 EQAAQWLQQGKLLAYPTESVWGIGCDAYNQQAVEQILAIKNRPSEKGMIVVTDSIERIR 88 >gi|22330801|ref|NP_566156.2| yrdC family protein [Arabidopsis thaliana] gi|6091731|gb|AAF03443.1|AC010797_19 hypothetical protein [Arabidopsis thaliana] gi|19310491|gb|AAL84979.1| At3g1920/F28J7.25 [Arabidopsis thaliana] gi|23505865|gb|AAN28792.1| At3g1920/F28J7.25 [Arabidopsis thaliana] gi|332640214|gb|AEE73735.1| putative translation factor [Arabidopsis thaliana] Length = 307 Score = 43.1 bits (100), Expect = 0.052, Method: Compositional matrix adjust. Identities = 34/101 (33%), Positives = 46/101 (45%), Gaps = 16/101 (15%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL--ICH-V 64 DS L+ + L G IPT+TVY +A D +N +A+ RL IKK + PL +C + Sbjct: 79 DSWKLQPVIDLLKQGAVGVIPTDTVYAIACDCKNHSAVERLRRIKKIESSKPLSILCRSL 138 Query: 65 SDISMVK---------KHASVDPLSLHLAKLFWPGPLTLVL 96 DI HA+V K PGP T +L Sbjct: 139 RDIDTFTMGFPRGDGHGHANV----FRAVKQCLPGPYTFIL 175 >gi|330806735|ref|YP_004351197.1| hypothetical protein PSEBR_a71 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327374843|gb|AEA66193.1| Conserved hypothetical protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 185 Score = 43.1 bits (100), Expect = 0.052, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 62/144 (43%), Gaps = 11/144 (7%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + +S +++A + AG IA PTE V+GL D N A+ RL IK R LI Sbjct: 1 MVNSWRVQQAAREIRAGAVIAYPTEAVWGLGCDPWNEEAVERLLAIKSRLPDKGLILVAD 60 Query: 66 DISMVKKHASVDPLS-LHLAKLFWPGPLTLVL---DLLST--TDIHPLSTANLKTA---C 116 +I P + + WPGP T ++ +LL T +H T L+ + Sbjct: 61 NIHQFDFLFEDFPDTWMDRMASTWPGPNTWLVPHQNLLPEWITGVH--DTVALRVSDHPT 118 Query: 117 FRVPCGFTKKLIETYGHPLAIPSA 140 R C L+ T +P P+A Sbjct: 119 VRDLCSLVGPLVSTSANPQGRPAA 142 >gi|284006128|emb|CBA71369.1| RNA-binding protein [Arsenophonus nasoniae] Length = 189 Score = 43.1 bits (100), Expect = 0.052, Method: Compositional matrix adjust. Identities = 36/136 (26%), Positives = 56/136 (41%), Gaps = 2/136 (1%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 + R L+ G IA PTE V+GL D N +R+L +K+R LI D + Sbjct: 8 SFRNIIAALNEGKIIAYPTEAVFGLGCDPDNEKTVRQLLLLKQRSWKKGLILIAGDYEQL 67 Query: 71 KKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLI 128 + + L+ L + G ++ + + + T + R+ KKL Sbjct: 68 IPYIDDNKLTNLQKEMMLSTGSKSITWVVPARKNTPKWLTGKFDSIAVRITNFELIKKLC 127 Query: 129 ETYGHPLAIPSANRSG 144 YG PL SAN +G Sbjct: 128 FLYGKPLISTSANLNG 143 >gi|37526349|ref|NP_929693.1| hypothetical protein plu2456 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36785780|emb|CAE14830.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 206 Score = 43.1 bits (100), Expect = 0.052, Method: Compositional matrix adjust. Identities = 45/188 (23%), Positives = 79/188 (42%), Gaps = 6/188 (3%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 ++ + L G + PT++ Y + + ++ R+ I++ + + D+S + + Sbjct: 19 QSVDMLKKGGVVIYPTDSGYAIGCHLEDKDSMTRICRIRQLDSHHNFTLMCRDLSEISTY 78 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIETY 131 A VD + L K PG T + L +T ++ L KT RVP L+E Sbjct: 79 AYVDNSAFRLIKNNTPGNYTFI--LRATKEVPRRLMNDKRKTIGLRVPSNPIALALLEQV 136 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 G PL S G + + ++ K++ LII GG +G + T V E + Sbjct: 137 GEPLMSTSLILPGNDFAESDPEEIKDNLGKQVDLIIHGGY--LGQQPTTVIDLTEDTPVV 194 Query: 192 LRPGGLEI 199 +R G I Sbjct: 195 IREGAGNI 202 >gi|93007286|ref|YP_581723.1| SUA5/yciO/yrdC-like [Psychrobacter cryohalolentis K5] gi|122414663|sp|Q1Q7W4|RIMN_PSYCK RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|92394964|gb|ABE76239.1| SUA5/yciO/yrdC-like [Psychrobacter cryohalolentis K5] Length = 214 Score = 43.1 bits (100), Expect = 0.053, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 2/50 (4%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP 55 ITDS +A +L G +A PTE+V+G+ D N A+ RL +IK+RP Sbjct: 8 ITDSTI--QAATWLKNGQLLAYPTESVWGIGCDPFNKQAVMRLLDIKQRP 55 >gi|187250803|ref|YP_001875285.1| (NiFe) hydrogenase maturation protein [Elusimicrobium minutum Pei191] gi|186970963|gb|ACC97948.1| (NiFe) hydrogenase maturation protein [Elusimicrobium minutum Pei191] Length = 736 Score = 43.1 bits (100), Expect = 0.055, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 AL+ A FLD G A+ + Y LA D++NP A+ L KKRP PL D+ Sbjct: 200 ALKTAAVFLDKGKITAVKSIGGYHLACDAKNPKAVTSLRLSKKRP-YKPLAIMFKDLKTA 258 Query: 71 KKHASVDPL 79 KK+ ++ + Sbjct: 259 KKYCFINKI 267 >gi|238798392|ref|ZP_04641874.1| hypothetical protein ymoll0001_19710 [Yersinia mollaretii ATCC 43969] gi|238717777|gb|EEQ09611.1| hypothetical protein ymoll0001_19710 [Yersinia mollaretii ATCC 43969] Length = 184 Score = 43.1 bits (100), Expect = 0.056, Method: Compositional matrix adjust. Identities = 44/180 (24%), Positives = 74/180 (41%), Gaps = 6/180 (3%) Query: 18 FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77 L G + PT++ Y L + TA+ R+ I++ + D+S + +A VD Sbjct: 1 MLRKGGVVVYPTDSGYALGCRLEDKTAMERICRIRQLDGNHNFTLVCRDLSELSTYAYVD 60 Query: 78 PLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIETYGHPL 135 + L K PG T +L +T ++ L KT RVP L++ G PL Sbjct: 61 NSAFRLIKNNTPGNYTFILK--ATKEVPRRLMNDKRKTIGLRVPSNPIALALLDVLGEPL 118 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 + G + + + K++ LII GG +G + T V + ++R G Sbjct: 119 MSTTLMLPGNDFAESDPEEIKDHLGKQVDLIIHGG--SLGQQPTTVIDLTDSSPEVIREG 176 >gi|330830520|ref|YP_004393472.1| translation factor YciO [Aeromonas veronii B565] gi|328805656|gb|AEB50855.1| translation factor YciO [Aeromonas veronii B565] Length = 206 Score = 43.1 bits (100), Expect = 0.058, Method: Compositional matrix adjust. Identities = 43/175 (24%), Positives = 78/175 (44%), Gaps = 16/175 (9%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 +A + + G I PT++ Y L + A+ R+ I++ A + D+S + + Sbjct: 19 QAVQIIQNGGVIVYPTDSGYALGCQMGDKGALERICRIRRLDANHDFTLVCRDLSEISTY 78 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIETY 131 A VD + L K PG T + +T ++ L K+ RVP + L+E Sbjct: 79 AKVDNSAFRLIKNNTPGAYTFIFK--ATKEVPRRLMNEKKKSIGIRVPDNKIAQALLEAL 136 Query: 132 GHPLA-----IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 G PL +P + +I+ + + I + K+I L+++GG +G + T V Sbjct: 137 GEPLLSTTLILPDS----EIAEFDPEEIF-DKLGKQIDLVVNGGY--LGEQPTTV 184 >gi|251792412|ref|YP_003007138.1| Sua5/YciO/YrdC/YwlC family protein [Aggregatibacter aphrophilus NJ8700] gi|247533805|gb|ACS97051.1| Sua5/YciO/YrdC/YwlC family protein [Aggregatibacter aphrophilus NJ8700] Length = 207 Score = 43.1 bits (100), Expect = 0.059, Method: Compositional matrix adjust. Identities = 52/193 (26%), Positives = 84/193 (43%), Gaps = 19/193 (9%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E L G I PT++ Y L + A+ R+ +I++ P + SD+S + Sbjct: 17 INQAVEILRKGGVIVYPTDSGYALGCMIGDKHAMDRIVQIRQLPEGHNFTLVCSDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 ++ V L K PG T +L +T ++ L T+ KT RVP L++ Sbjct: 77 NYSLVPNSVYRLIKNNTPGRYTFILT--ATKELPRRLMTSKRKTIGIRVPDNQIALDLLK 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSS-------ICKEIPLIIDGGISKIGLESTIVN 182 G P+ S + + N +HI S + +++ LII GG +G E T V Sbjct: 135 ALGEPIL------SCSLMLPNEEHITQSDPEEIRDRLERQVDLIIHGGY--LGQEPTTVV 186 Query: 183 VQCEKKVRILRPG 195 + ILR G Sbjct: 187 DLTDSTPIILREG 199 >gi|149923373|ref|ZP_01911780.1| Sua5/YciO/YrdC/YwlC family protein [Plesiocystis pacifica SIR-1] gi|149815787|gb|EDM75311.1| Sua5/YciO/YrdC/YwlC family protein [Plesiocystis pacifica SIR-1] Length = 212 Score = 43.1 bits (100), Expect = 0.059, Method: Compositional matrix adjust. Identities = 54/200 (27%), Positives = 84/200 (42%), Gaps = 16/200 (8%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVY--GLAVDS-RNPTAIRRLYEIKKRPAMNPLICHV 64 D L A E L G I PT+T Y G A+ S + + +R+L I + A PL V Sbjct: 18 DPRKLSPAVEALQRGAVIIYPTDTGYAFGCALSSNKGISTLRKLKGIHAKHA-KPLTMLV 76 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP---- 120 ++ + ++ + + + + PGP T+VL +T+D+ R+P Sbjct: 77 ETLNDMGRYGVMPNTAFRVVRRLLPGPYTMVLR--ATSDVPRAMKNRTGEVGMRLPDHKV 134 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-ST 179 C L+E G PL S L + ++I L+IDGG I E ST Sbjct: 135 CNL---LVEHLGEPLLTGSLTPGEDSPELEDPAELEARYNRDIGLMIDGG--HIWPEPST 189 Query: 180 IVNVQCEKKVRILRPGGLEI 199 ++ + +LR G EI Sbjct: 190 VLRFDERGDIEVLREGQGEI 209 >gi|50121220|ref|YP_050387.1| hypothetical protein ECA2292 [Pectobacterium atrosepticum SCRI1043] gi|49611746|emb|CAG75195.1| conserved hypothetical protein [Pectobacterium atrosepticum SCRI1043] Length = 206 Score = 43.1 bits (100), Expect = 0.061, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 74/186 (39%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + ++ EFL G I PT++ Y L A+ R+ I+ + + D+S + Sbjct: 17 INQSVEFLHKGGVIVYPTDSGYALGCMLGEKNALERICRIRDLGSDHNFTLMCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD + L K PG T +L +T ++ L KT RVP L+ Sbjct: 77 TYAHVDNAAFRLIKNNTPGNYTFILK--ATKEVPRRLMNDKRKTIGLRVPSNPIALDLLA 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 PL + G + + + K + LII GG +G + T V E Sbjct: 135 ALNEPLMSTTLMLQGNDFAESDPEEIQERLGKLVDLIIHGG--SLGQQPTTVIDLTESVP 192 Query: 190 RILRPG 195 R+ R G Sbjct: 193 RVAREG 198 >gi|262373289|ref|ZP_06066568.1| conserved hypothetical protein [Acinetobacter junii SH205] gi|262313314|gb|EEY94399.1| conserved hypothetical protein [Acinetobacter junii SH205] Length = 205 Score = 43.1 bits (100), Expect = 0.061, Method: Compositional matrix adjust. Identities = 45/188 (23%), Positives = 77/188 (40%), Gaps = 10/188 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + + AG + PT+ Y + N A+ R+ +I+ + D+S + Sbjct: 16 ITQAVDRIRAGDVVVYPTDAAYAIGCQIGNKNAMERIAQIRGLGPKHQYAIMCCDLSDIA 75 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127 +A VD L K P T +L S +HP KT R+P + L Sbjct: 76 TYAKVDNAMYRLLKNNTPAVTTFILPATSEVPKRLMHPKK----KTIGLRIPSNPIAQAL 131 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ G PL + Q + + + + + K I + IDGG + S IV++ E Sbjct: 132 LKELGEPLLTSTLILPDQTEPLDDPYDIENQLGKRIDVFIDGGFGTLSTTS-IVDLSGEN 190 Query: 188 KVRILRPG 195 I+R G Sbjct: 191 P-EIVRRG 197 >gi|162418116|ref|YP_001606745.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis Angola] gi|162350931|gb|ABX84879.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis Angola] Length = 176 Score = 43.1 bits (100), Expect = 0.063, Method: Compositional matrix adjust. Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 6/174 (3%) Query: 28 PTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLF 87 PT++ Y L + TA+ R+ I++ + D+S + +A VD + L K Sbjct: 3 PTDSGYALGCRLEDKTAMERICRIRQLDGNHNFTLVCRDLSELSTYAYVDNSAFRLIKNN 62 Query: 88 WPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQ 145 PG T +L +T ++ L KT RVP L++ G PL + G Sbjct: 63 TPGNYTFILK--ATKEVPRRLMNDKRKTIGLRVPSNPIALALLDALGEPLMSTTLMLPGN 120 Query: 146 ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEI 199 + + ++ K++ LII GG +G + T V + ++R G ++ Sbjct: 121 DFAESDPEEIKENLGKQVDLIIHGG--SLGQQPTTVIDLTDSAPEVIREGAGDV 172 >gi|149608588|ref|XP_001515227.1| PREDICTED: similar to YRDC protein, partial [Ornithorhynchus anatinus] Length = 65 Score = 42.7 bits (99), Expect = 0.067, Method: Composition-based stats. Identities = 23/50 (46%), Positives = 30/50 (60%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 AL A L AG IA+PT+T+YGLA + + A+R +Y IK R PL Sbjct: 5 ALGLAVSALRAGGVIAVPTDTLYGLACSALSSAALRDVYRIKGRSGDKPL 54 >gi|238794708|ref|ZP_04638312.1| hypothetical protein yinte0001_18120 [Yersinia intermedia ATCC 29909] gi|238725939|gb|EEQ17489.1| hypothetical protein yinte0001_18120 [Yersinia intermedia ATCC 29909] Length = 206 Score = 42.7 bits (99), Expect = 0.068, Method: Compositional matrix adjust. Identities = 43/186 (23%), Positives = 77/186 (41%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + ++ + L G + PT++ Y L + A+ R+ I++ + D+S + Sbjct: 17 INQSVDVLRKGGVVVYPTDSGYALGCRLEDKAAMERICRIRQLDGNHNFTLVCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD + L K PG T +L +T ++ L KT RVP L++ Sbjct: 77 TYAYVDNSAFRLIKNNTPGNYTFILK--ATKEVPRRLMNDKRKTIGLRVPSNPIALALLD 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL + G + + + K++ LII GG +G + T V + Sbjct: 135 VLGEPLMSTTLMLPGNDFAESDPEEIKDHLGKQVDLIIHGG--SLGQQPTTVIDLTDSSP 192 Query: 190 RILRPG 195 ++R G Sbjct: 193 EVIREG 198 >gi|91228667|ref|ZP_01262582.1| putative translation factor [Vibrio alginolyticus 12G01] gi|254230518|ref|ZP_04923890.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio sp. Ex25] gi|262393862|ref|YP_003285716.1| YrdC family protein [Vibrio sp. Ex25] gi|269967048|ref|ZP_06181116.1| conserved hypothetical protein [Vibrio alginolyticus 40B] gi|91187788|gb|EAS74105.1| putative translation factor [Vibrio alginolyticus 12G01] gi|151936966|gb|EDN55852.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio sp. Ex25] gi|262337456|gb|ACY51251.1| YrdC family protein [Vibrio sp. Ex25] gi|269828307|gb|EEZ82573.1| conserved hypothetical protein [Vibrio alginolyticus 40B] Length = 206 Score = 42.7 bits (99), Expect = 0.068, Method: Compositional matrix adjust. Identities = 44/186 (23%), Positives = 77/186 (41%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + G + PT++ Y L N A+ R+ +I++ + D+S + Sbjct: 17 INQAVAIIRNGGVVVYPTDSGYALGCQLENKQALERICQIRRLDDKHNFTLLCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD + L K PGP T + T ++ L A KT RVP L+E Sbjct: 77 LYARVDNSAFRLLKNNTPGPYTFIFK--GTKEVPRRLMNAKRKTIGIRVPDNQIALDLLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G P+ S G + + + + +I++GG +G + T V E + Sbjct: 135 ALGEPMMSTSLILPGSDVTESDPEDIRDKLEHAVDVILNGGY--LGEQPTTVIDFSEGEP 192 Query: 190 RILRPG 195 ++R G Sbjct: 193 VVVRLG 198 >gi|304386703|ref|ZP_07368976.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis ATCC 13091] gi|304339218|gb|EFM05299.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis ATCC 13091] Length = 224 Score = 42.7 bits (99), Expect = 0.069, Method: Compositional matrix adjust. Identities = 22/85 (25%), Positives = 42/85 (49%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E ++ G + PT++ Y L + A+ R+ I+K + L +D+S + Sbjct: 35 IKQAVEIVNQGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLSELG 94 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVL 96 +A +D + K PGP T +L Sbjct: 95 TYAKIDNVQFRQLKAATPGPYTFIL 119 >gi|325132982|gb|EGC55659.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis M6190] gi|325138970|gb|EGC61520.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis ES14902] Length = 206 Score = 42.7 bits (99), Expect = 0.070, Method: Compositional matrix adjust. Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 7/112 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E ++ G + PT++ Y L + A+ R+ I+K + L +D+S + Sbjct: 17 IKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLSELG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDL---LSTTDIHPLSTANLKTACFRVP 120 +A +D + K PGP T +L + +HP KT R+P Sbjct: 77 TYAKIDNVQFRQLKAATPGPYTFILQATKEVPARTLHP----KRKTIGLRIP 124 >gi|225024541|ref|ZP_03713733.1| hypothetical protein EIKCOROL_01416 [Eikenella corrodens ATCC 23834] gi|224942692|gb|EEG23901.1| hypothetical protein EIKCOROL_01416 [Eikenella corrodens ATCC 23834] Length = 206 Score = 42.7 bits (99), Expect = 0.070, Method: Compositional matrix adjust. Identities = 47/179 (26%), Positives = 73/179 (40%), Gaps = 20/179 (11%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E + G I PT++ Y L N A+ R+ I++ + L +D+S + Sbjct: 17 VKQAAEIVRQGGVIVYPTDSCYALGCQMGNKEAMERILAIRQIDLKHHLTLMCADLSELG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 +A VD K PG T +L + +HP KT RVP L Sbjct: 77 TYAKVDNSQFRQLKAATPGAYTFILPATKEVPNRTLHP----KRKTIGLRVPDNKIALAL 132 Query: 128 IETYGHP-----LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 + G P L +P Q ++++L + + LIIDGG G E T V Sbjct: 133 LAELGEPMLSCTLMLPEETEP-QTDPYEIRNLLEHA----VDLIIDGGWC--GTEPTTV 184 >gi|261391950|emb|CAX49412.1| conserved hypothetical protein [Neisseria meningitidis 8013] Length = 206 Score = 42.7 bits (99), Expect = 0.070, Method: Compositional matrix adjust. Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 7/112 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E ++ G + PT++ Y L + A+ R+ I+K + L +D+S + Sbjct: 17 IKQAVEIVNQGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLSELG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDL---LSTTDIHPLSTANLKTACFRVP 120 +A +D + K PGP T +L + +HP KT R+P Sbjct: 77 TYAKIDNVQFRQLKAATPGPYTFILQATKEVPARTLHP----KRKTIGLRIP 124 >gi|153835312|ref|ZP_01987979.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio harveyi HY01] gi|156975029|ref|YP_001445936.1| hypothetical protein VIBHAR_02755 [Vibrio harveyi ATCC BAA-1116] gi|148868177|gb|EDL67330.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio harveyi HY01] gi|156526623|gb|ABU71709.1| hypothetical protein VIBHAR_02755 [Vibrio harveyi ATCC BAA-1116] Length = 206 Score = 42.7 bits (99), Expect = 0.070, Method: Compositional matrix adjust. Identities = 41/172 (23%), Positives = 71/172 (41%), Gaps = 6/172 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + G + PT++ Y L N A+ R+ +I++ + D+S + Sbjct: 17 INQAVAIIRNGGVVVYPTDSGYALGCQLENKQALERICQIRRLDDKHNFTLLCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD + L K PGP T + T ++ L A KT RVP L+E Sbjct: 77 LYARVDNSAFRLLKNNTPGPYTFIFK--GTKEVPRRLMNAKRKTIGIRVPDNRIALDLLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 G P+ S G + + + + +I++GG +G + T V Sbjct: 135 ALGEPMMSTSLILPGSDVTESDPEDIRDKLEHAVDVILNGGY--LGEQPTTV 184 >gi|297250433|ref|ZP_06864286.2| Sua5/YciO/YrdC/YwlC family protein [Neisseria polysaccharea ATCC 43768] gi|296838895|gb|EFH22833.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria polysaccharea ATCC 43768] Length = 239 Score = 42.7 bits (99), Expect = 0.072, Method: Compositional matrix adjust. Identities = 22/85 (25%), Positives = 42/85 (49%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E ++ G + PT++ Y L + A+ R+ I+K + L +D+S + Sbjct: 50 IKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDQKHHLTLVCADLSELG 109 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVL 96 +A +D + K PGP T +L Sbjct: 110 TYAKIDNVQFRQLKAATPGPYTFIL 134 >gi|121635430|ref|YP_975675.1| hypothetical protein NMC1726 [Neisseria meningitidis FAM18] gi|120867136|emb|CAM10903.1| conserved hypothetical protein [Neisseria meningitidis FAM18] Length = 254 Score = 42.7 bits (99), Expect = 0.073, Method: Compositional matrix adjust. Identities = 22/85 (25%), Positives = 42/85 (49%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E ++ G + PT++ Y L + A+ R+ I+K + L +D+S + Sbjct: 65 IKQAVEIVNQGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLSELG 124 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVL 96 +A +D + K PGP T +L Sbjct: 125 TYAKIDNVQFRQLKAATPGPYTFIL 149 >gi|254671067|emb|CBA07959.1| conserved hypothetical protein [Neisseria meningitidis alpha153] Length = 206 Score = 42.7 bits (99), Expect = 0.075, Method: Compositional matrix adjust. Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 7/112 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E ++ G + PT++ Y L + A+ R+ I+K + L +D+S + Sbjct: 17 IKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLSELG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDL---LSTTDIHPLSTANLKTACFRVP 120 +A +D + K PGP T +L + +HP KT R+P Sbjct: 77 TYAKIDNVQFRQLKAATPGPYTFILQATKEVPARTLHP----KRKTIGLRIP 124 >gi|290475292|ref|YP_003468180.1| protein yciO [Xenorhabdus bovienii SS-2004] gi|289174613|emb|CBJ81407.1| Protein yciO [Xenorhabdus bovienii SS-2004] Length = 206 Score = 42.7 bits (99), Expect = 0.076, Method: Compositional matrix adjust. Identities = 49/193 (25%), Positives = 78/193 (40%), Gaps = 14/193 (7%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S + ++ + L G + PT++ Y + N A+ R+ I++ + D+S Sbjct: 14 SRLIGQSVDMLKKGGVVIYPTDSGYAIGCCLENKDAMTRICRIRQLDGRHNFTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKK 126 + +A VD + L K PG T +L +T D+ L KT RVP Sbjct: 74 EIATYAHVDNQAFRLIKNNTPGNYTFILQ--ATKDVPRRLMNEKRKTIGLRVPSNPIALA 131 Query: 127 LIETYGHPLA----IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 L+E PL I N + +K +L K++ LII GG +G + T V Sbjct: 132 LLEGMREPLMSCSLILPGNDFAESDPEEIKDVLG----KQVDLIIHGGY--LGQQPTTVI 185 Query: 183 VQCEKKVRILRPG 195 +LR G Sbjct: 186 DLTGDSPAVLREG 198 >gi|261210663|ref|ZP_05924955.1| YrdC family protein [Vibrio sp. RC341] gi|262402465|ref|ZP_06079026.1| YrdC family protein [Vibrio sp. RC586] gi|260840148|gb|EEX66728.1| YrdC family protein [Vibrio sp. RC341] gi|262351247|gb|EEZ00380.1| YrdC family protein [Vibrio sp. RC586] Length = 206 Score = 42.7 bits (99), Expect = 0.076, Method: Compositional matrix adjust. Identities = 42/186 (22%), Positives = 76/186 (40%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + G + PT++ Y + N + R+ +I++ + D+S + Sbjct: 17 INQAVAIIRNGGVVVYPTDSGYAVGCQLENKHGMERICQIRRLDDKHNFTLLCRDLSEIS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD + L K PGP T + T ++ L KT RVP L+E Sbjct: 77 LYARVDNTAFRLLKNNTPGPYTFIFK--GTKEVPRRLMNEKRKTIGIRVPDNKIALDLLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL S G + + S+ + +I++GG +G + T V + ++ Sbjct: 135 ALGEPLMSTSLILPGNDFTESDPEAIRDSLEHAVDVILNGGY--LGQQPTTVIDFSDDEI 192 Query: 190 RILRPG 195 + R G Sbjct: 193 VVARVG 198 >gi|237807720|ref|YP_002892160.1| Sua5/YciO/YrdC/YwlC family protein [Tolumonas auensis DSM 9187] gi|237499981|gb|ACQ92574.1| Sua5/YciO/YrdC/YwlC family protein [Tolumonas auensis DSM 9187] Length = 206 Score = 42.7 bits (99), Expect = 0.076, Method: Compositional matrix adjust. Identities = 45/186 (24%), Positives = 78/186 (41%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A L G I PT++ Y L + +A+ ++ I++ + +D+S + Sbjct: 17 ISQAVGILRQGGVIIYPTDSGYALGCMMGDKSALEKICRIRQLEDEHNFTLLCNDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129 +A +D + L K PG T +L +T ++ L KT RVP + L+ Sbjct: 77 VYAKIDNTAFRLIKNNTPGAYTFILK--ATKEVPRRLMNEKKKTIGIRVPTNNIAQALLT 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL + GQ + K + LIIDGG G + T V + + Sbjct: 135 ELGEPLMSSTLILPGQALAEADPEEFRGQLEKVVDLIIDGGTQ--GAQPTTVIDFSDDEP 192 Query: 190 RILRPG 195 +++R G Sbjct: 193 KVVRFG 198 >gi|161503166|ref|YP_001570278.1| hypothetical protein SARI_01234 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864513|gb|ABX21136.1| hypothetical protein SARI_01234 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 206 Score = 42.7 bits (99), Expect = 0.077, Method: Compositional matrix adjust. Identities = 45/186 (24%), Positives = 78/186 (41%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + + G I PT++ Y L + A+ R+ I++ P + D+S + Sbjct: 17 INQAVDIVRKGGVIVYPTDSGYALGCKIEDKGAMERICRIRQLPDGHNFTLMCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 ++ VD ++ L K PG T +L T ++ L KT RVP L++ Sbjct: 77 TYSFVDNVAFRLIKNNTPGNYTFILK--GTKELPRRLLQEKRKTIGLRVPSNPIALALLD 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 T P+ S G + + + K++ LII GG +G + T V + Sbjct: 135 TLSEPMLSTSLMLPGSDFTESDPEEIKERLEKQVDLIIHGGY--LGQQPTTVIDLTDDSP 192 Query: 190 RILRPG 195 +LR G Sbjct: 193 VVLRVG 198 >gi|26553519|ref|NP_757453.1| translation factor [Mycoplasma penetrans HF-2] gi|26453525|dbj|BAC43857.1| predicted translation factor [Mycoplasma penetrans HF-2] Length = 213 Score = 42.7 bits (99), Expect = 0.078, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 63/149 (42%), Gaps = 25/149 (16%) Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 LI VS++ + V+ LA FWPG LTL+ K +R+ Sbjct: 85 LIRFVSNLDQI---PEVNETFKKLASKFWPGKLTLI----------------YKKESYRM 125 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSS-SICKEIPLIIDGGISKIGLE 177 P F LI+ G PL SAN SG ITN+ S + K + I+G + Sbjct: 126 PDDKFILNLIDKTG-PLYSSSANLSGNPPITNIIDAFESFNKYKSDIIFIEGDYYQNNQP 184 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAI 206 STI ++ + R G ++ E +K+ I Sbjct: 185 STIYDIDTN---TLKREGEIKYEWIKKTI 210 >gi|255530767|ref|YP_003091139.1| Sua5/YciO/YrdC/YwlC family protein [Pedobacter heparinus DSM 2366] gi|255343751|gb|ACU03077.1| Sua5/YciO/YrdC/YwlC family protein [Pedobacter heparinus DSM 2366] Length = 188 Score = 42.7 bits (99), Expect = 0.079, Method: Compositional matrix adjust. Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 7/136 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + KA L G I PT+TV+GL D+ N A ++ IK R I + + ++ Sbjct: 6 IEKALAVLKDGGVILYPTDTVWGLGCDATNEQAAAKINAIKGRAEDKSFIVLLDTDAKIQ 65 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128 + + P + + PLTLV L+ I+ + ++ A F ++LI Sbjct: 66 SYVTEVPDVAYDLIEYAENPLTLVFPGAKNLAKNVINADGSVGIRIARHE----FCQQLI 121 Query: 129 ETYGHPLAIPSANRSG 144 + + P+ SAN SG Sbjct: 122 QRFRKPITSTSANVSG 137 >gi|325198880|gb|ADY94336.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis G2136] Length = 206 Score = 42.7 bits (99), Expect = 0.079, Method: Compositional matrix adjust. Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 7/112 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E ++ G + PT++ Y L + A+ R+ I+K + L +D+S + Sbjct: 17 IKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLSELG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDL---LSTTDIHPLSTANLKTACFRVP 120 +A +D + K PGP T +L + +HP KT R+P Sbjct: 77 TYAKIDNVQFRQLKAATPGPYTFILQATKEVPARTLHP----KRKTIGLRIP 124 >gi|262369302|ref|ZP_06062630.1| yrdC domain-containing protein [Acinetobacter johnsonii SH046] gi|262315370|gb|EEY96409.1| yrdC domain-containing protein [Acinetobacter johnsonii SH046] Length = 205 Score = 42.7 bits (99), Expect = 0.079, Method: Compositional matrix adjust. Identities = 40/176 (22%), Positives = 72/176 (40%), Gaps = 8/176 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ +A E + AG + PT+ Y + N A+ R+ +I+ A + +D+S Sbjct: 13 ARSISQAVERIRAGDVVVYPTDAAYAIGCQIGNKNAMERIAQIRGLGAKHQYAIICADLS 72 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FT 124 + +A VD L K P T +L S +HP KT R+P Sbjct: 73 DIATYAKVDNAMYRLLKNNTPAVTTFILPATSEVPKRLMHP----KKKTIGLRIPSNPVC 128 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 + L++ G PL + Q + + + + K I + ID G+ + S + Sbjct: 129 QMLLKELGEPLLTSTLILPNQEEPLDDPYDIEMQLSKRIDVFIDSGLGTLSTTSIV 184 >gi|119509584|ref|ZP_01628731.1| SUA5/yciO/yrdC-like protein [Nodularia spumigena CCY9414] gi|119465773|gb|EAW46663.1| SUA5/yciO/yrdC-like protein [Nodularia spumigena CCY9414] Length = 200 Score = 42.7 bits (99), Expect = 0.083, Method: Compositional matrix adjust. Identities = 53/185 (28%), Positives = 79/185 (42%), Gaps = 11/185 (5%) Query: 21 AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH--ASVDP 78 AGL ++ PT+TV LA P ++ K+R PLI + + + S + Sbjct: 19 AGLLVSFPTDTVPALAA---LPEKAGLIFAAKQRSQDKPLILMGASAEDLWPYVQGSENE 75 Query: 79 LSLH--LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLA 136 L + +A WPG LTLVL S ++ + T RVP + I LA Sbjct: 76 LKIWQDVANRHWPGALTLVLP-ASQKVPKQMNPTDPSTIGIRVPQSAIAQTILAQTGALA 134 Query: 137 IPSANRSGQISITNVKHILSS--SICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194 SAN SGQ + + I + P +G S IG+ ST V+ + ILR Sbjct: 135 TTSANFSGQQPLLKLAEIAEQFPEVLTLEPTQFNGEFSGIGVPST-VSKWTGRNWEILRQ 193 Query: 195 GGLEI 199 G +++ Sbjct: 194 GTVKL 198 >gi|15618190|ref|NP_224475.1| SuA5 superfamily-related protein [Chlamydophila pneumoniae CWL029] gi|15835805|ref|NP_300329.1| SuA5 superfamily-related protein [Chlamydophila pneumoniae J138] gi|16752768|ref|NP_445036.1| Sua5/YciO/YrdC family protein [Chlamydophila pneumoniae AR39] gi|4376543|gb|AAD18419.1| SuA5 Superfamily-related Protein [Chlamydophila pneumoniae CWL029] gi|7189407|gb|AAF38319.1| Sua5/YciO/YrdC family protein [Chlamydophila pneumoniae AR39] gi|8978644|dbj|BAA98480.1| SuA5 superfamily-related protein [Chlamydophila pneumoniae J138] Length = 286 Score = 42.7 bits (99), Expect = 0.084, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 72/162 (44%), Gaps = 12/162 (7%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS--VDPL 79 G +A+PT+TVYG + A RLY +K R +V+ I ++ + + P Sbjct: 22 GKIVALPTDTVYGFVLSLYASEAEERLYALKDREPSKAFALYVNSIEDIENISGYPLSPT 81 Query: 80 SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPS 139 + LA+LF PG +TLV+ H +T FR+ + I + L S Sbjct: 82 AKKLAQLF-PGAITLVVK-------HRNPRFPKETLAFRIVDHSVVREIVDHCGTLIGTS 133 Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 AN S S + I + ++ I DG S GLEST+V Sbjct: 134 ANLSEFPSALTAQEIFADFADHDL-CIFDGPCSH-GLESTVV 173 >gi|117619033|ref|YP_857424.1| Sua5/YciO/YrdC/YwlC family protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560440|gb|ABK37388.1| Sua5/YciO/YrdC/YwlC family protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 229 Score = 42.7 bits (99), Expect = 0.085, Method: Compositional matrix adjust. Identities = 42/177 (23%), Positives = 79/177 (44%), Gaps = 16/177 (9%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + + G I PT++ Y L + A+ R+ I++ + D+S + Sbjct: 40 ISQAVQIIQNGGVIVYPTDSGYALGCQMGDKGALERICRIRRIDPNHDFTLVCRDLSEIS 99 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD + L K PGP T + +T ++ L KT RVP + L+E Sbjct: 100 TYAKVDNTAFRLIKNNTPGPYTFIFK--ATKEVPRRLMNEKKKTIGIRVPDNKIAQALLE 157 Query: 130 TYGHPLA-----IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 G PL +P ++ ++ + + I + K++ L+++GG +G + T V Sbjct: 158 ALGEPLLSTTLILPESD----MAEFDPEEIF-DKLGKQLDLVVNGGY--LGEQPTTV 207 >gi|332977635|gb|EGK14403.1| Sua5/YciO/YrdC/YwlC family protein [Psychrobacter sp. 1501(2011)] Length = 207 Score = 42.4 bits (98), Expect = 0.092, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 4/113 (3%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 I PT+T Y + AI +L I++ + D+S + +A+VD L Sbjct: 29 IIYPTDTSYAFGCKIGSKEAIEKLRLIRQLDDRHQFTLLCRDLSEIATYATVDNQQFKLL 88 Query: 85 KLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIETYGHPL 135 K P P+T +LD +T D+ LS KT RVP ++ +++ G P+ Sbjct: 89 KASTPSPITFILD--ATKDVPKKLSHPKKKTIGIRVPSNPISQMILDAMGEPI 139 >gi|260597698|ref|YP_003210269.1| carbamoyltransferase hypF [Cronobacter turicensis z3032] gi|260216875|emb|CBA30419.1| Carbamoyltransferase hypF [Cronobacter turicensis z3032] Length = 764 Score = 42.4 bits (98), Expect = 0.093, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 68/148 (45%), Gaps = 19/148 (12%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 AL A + L+ GL +AI + LA D++NP A+ RL K RPA PL ++D + + Sbjct: 215 ALEAAIDALNEGLIVAIKGIGGFHLACDAQNPDAVARLRARKHRPA-KPLAVMLTDAAGL 273 Query: 71 KKHASVDPLSLHLAKLFWP-GPLTLVLDLLSTTDIHPLSTA---NLKTACFRVPCG-FTK 125 A A+L P P+ LV + PL A L +P Sbjct: 274 PDDAR--------AQLTTPAAPIVLV----DNAHLPPLCEAIAPGLNETGVMLPANPLQH 321 Query: 126 KLIETYGHPLAIPSANRSGQ-ISITNVK 152 L++ G PL + S NRSG+ ++TN + Sbjct: 322 LLMQGVGRPLVMTSGNRSGEPPALTNAQ 349 >gi|226941023|ref|YP_002796097.1| SUA5/YciO/YrdC/YwlC family protein [Laribacter hongkongensis HLHK9] gi|226715950|gb|ACO75088.1| SUA5/YciO/YrdC/YwlC family protein [Laribacter hongkongensis HLHK9] Length = 210 Score = 42.4 bits (98), Expect = 0.094, Method: Compositional matrix adjust. Identities = 44/176 (25%), Positives = 77/176 (43%), Gaps = 14/176 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN--PLICHVSDISM 69 +R+A + + G I PT++ Y L + A+ R+ I++ + L+CH ++S Sbjct: 17 IREAVKIVREGGVIVYPTDSCYALGCRLSDKKAMDRIITIRQLDLRHHFTLVCH--NLSE 74 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTT---DIHPLSTANLKTACFRVP-CGFTK 125 + +A VD L K PG T +L +HP +T RVP Sbjct: 75 LGTYARVDNTVYRLLKSVTPGAYTFILQATKEVPRRTLHP----KRQTIGLRVPDNAIAL 130 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 L+E G P+ + G+ + + + +I ++ L+IDGG G++ T V Sbjct: 131 ALLEELGEPMLSCTLMLPGENEPPSDPYDIRDTIGPQVDLVIDGGYC--GVDPTTV 184 >gi|293611139|ref|ZP_06693437.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292826390|gb|EFF84757.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 189 Score = 42.4 bits (98), Expect = 0.095, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 35/63 (55%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ +A + L G +A PTE V+GL D N A +++ E+K+RP +I I+ Sbjct: 3 TTSVTEAAQCLQQGQVLAYPTEAVWGLGCDPFNEQAFQKILELKQRPIEKGVILLAGHIN 62 Query: 69 MVK 71 V+ Sbjct: 63 QVE 65 >gi|261821581|ref|YP_003259687.1| hypothetical protein Pecwa_2310 [Pectobacterium wasabiae WPP163] gi|261605594|gb|ACX88080.1| Sua5/YciO/YrdC/YwlC family protein [Pectobacterium wasabiae WPP163] Length = 206 Score = 42.4 bits (98), Expect = 0.095, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 74/186 (39%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + ++ EFL G I PT++ Y L A+ R+ I+ + + D+S + Sbjct: 17 INQSVEFLHKGGVIVYPTDSGYALGCMLGEKNALERICRIRDLGSDHNFTLMCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD + L K PG T +L +T ++ L KT RVP L+ Sbjct: 77 TYAHVDNSAFRLIKNNTPGNYTFILK--ATKEVPRRLMNEKRKTIGLRVPSNPIALDLLA 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 PL + G + + + K + LII GG +G + T V E Sbjct: 135 ALNEPLMSTTLMLPGNDFAESDPEEIQEELGKLVDLIIHGG--SLGQQPTTVIDLTESVP 192 Query: 190 RILRPG 195 R+ R G Sbjct: 193 RVAREG 198 >gi|254784309|ref|YP_003071737.1| protein YrdC [Teredinibacter turnerae T7901] gi|237687380|gb|ACR14644.1| protein YrdC [Teredinibacter turnerae T7901] Length = 186 Score = 42.4 bits (98), Expect = 0.095, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 64/165 (38%), Gaps = 15/165 (9%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR-PAMNPLIC 62 M A+ + + L+ G IA PTE V+GL D N A+ ++ +K+R P +I Sbjct: 1 MDYRAHPAIHRCVDALNKGDVIAYPTEAVWGLGCDPFNQHAVDKVLWLKRRKPEKGLIIV 60 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANL----KTACFR 118 S + + P WPGP T ++ H AN+ T R Sbjct: 61 AASAAQIQWLLQGITPAQEQQLSASWPGPNTWLIPH------HGRIPANVCGQHATIAVR 114 Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSG---QISITNVKHILSSSI 159 V + L + YG P+ SAN T V+H S+ Sbjct: 115 VSSHPVVRALCQAYGGPIVSTSANPQALRPARDATQVRHYFRDSV 159 >gi|85712441|ref|ZP_01043490.1| Possible translation factor, Sua5/YciO/YrdC/YwlC family protein [Idiomarina baltica OS145] gi|85693719|gb|EAQ31668.1| Possible translation factor, Sua5/YciO/YrdC/YwlC family protein [Idiomarina baltica OS145] Length = 207 Score = 42.4 bits (98), Expect = 0.095, Method: Compositional matrix adjust. Identities = 38/161 (23%), Positives = 66/161 (40%), Gaps = 4/161 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A + + G + PT++ Y + + A+ R+ +I+ + D+S + Sbjct: 17 IQQAVDIIRQGGIVVYPTDSGYAIGCQIGDKKAVDRICQIRDIDKEHNFTLMCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD + L K PGP T +L T ++ L KT RVP L+E Sbjct: 77 TYARVDNDAFRLLKNNTPGPYTFILK--GTKEVPKRLLNPKRKTIGIRVPTNRIALALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 PL S + + + K + LI+DGG Sbjct: 135 ELNEPLMSTSLILGNNELAESDPETIREQLEKRVDLIVDGG 175 >gi|241760643|ref|ZP_04758735.1| translation factor SUA5 [Neisseria flavescens SK114] gi|241318824|gb|EER55350.1| translation factor SUA5 [Neisseria flavescens SK114] Length = 212 Score = 42.4 bits (98), Expect = 0.097, Method: Compositional matrix adjust. Identities = 47/195 (24%), Positives = 80/195 (41%), Gaps = 11/195 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I + A R+ L G IA PTE+ YGL A+ +L +KKRP + Sbjct: 24 MMFPRILSAAAQRRLQAHLKKGGLIAYPTESCYGLGCVPTLSKALNQLIHLKKRPQHKGM 83 Query: 61 ICHVSDIS----MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 I + ++++ + LH A WP P T +L S + L Sbjct: 84 IVIGHSLEQLQPLLQRPSENIQTMLHEA---WPAPKTFLLP-ASKKVLPSLRGKGRSKLA 139 Query: 117 FRVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 RVP ++L + PL S NR+G+ + + + +++ ++ G I K Sbjct: 140 VRVPAHAGARRLCQVLETPLVSTSCNRAGKRACKTEREV-RRQFGRKV-WVVGGLIGKQK 197 Query: 176 LESTIVNVQCEKKVR 190 S I++ + ++R Sbjct: 198 TPSQIIDGETGARLR 212 >gi|238754969|ref|ZP_04616318.1| hypothetical protein yruck0001_15210 [Yersinia ruckeri ATCC 29473] gi|238706828|gb|EEP99196.1| hypothetical protein yruck0001_15210 [Yersinia ruckeri ATCC 29473] Length = 186 Score = 42.4 bits (98), Expect = 0.098, Method: Compositional matrix adjust. Identities = 44/181 (24%), Positives = 73/181 (40%), Gaps = 6/181 (3%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 + L G I PT++ Y L A+ R+ I++ + D+S + +A V Sbjct: 2 DVLRKGGVIVYPTDSGYALGCRLEEKAAMERICRIRQLDGNHNFTLVCRDLSELSTYAHV 61 Query: 77 DPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIETYGHP 134 D + L K PG T +L +T ++ L KT RVP L++ G P Sbjct: 62 DNSAFRLIKNNTPGNYTFILK--ATKEVPRRLMNDKRKTIGLRVPSNPIALALLDVLGEP 119 Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194 L + G + + + K++ L+I GG +G + T V E ++R Sbjct: 120 LMSTTLMLPGNDFAESDPEEIRDHLGKQVDLVIHGG--SLGQQPTTVIDLTESSPEVIRE 177 Query: 195 G 195 G Sbjct: 178 G 178 >gi|225075954|ref|ZP_03719153.1| hypothetical protein NEIFLAOT_00979 [Neisseria flavescens NRL30031/H210] gi|224952669|gb|EEG33878.1| hypothetical protein NEIFLAOT_00979 [Neisseria flavescens NRL30031/H210] Length = 206 Score = 42.4 bits (98), Expect = 0.098, Method: Compositional matrix adjust. Identities = 49/197 (24%), Positives = 82/197 (41%), Gaps = 21/197 (10%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A + + +G I PT++ Y L + A+ R+ I+K + L +D+S + Sbjct: 17 IKQAADIVRSGGVIVYPTDSCYALGCKLGDKNAMERILTIRKIDQKHHLTLMCADLSELG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDL---LSTTDIHPLSTANLKTACFRVPCGFTK-KL 127 +A VD K PG T +L + +HP KT RVP T L Sbjct: 77 TYAKVDNAQFRQLKAATPGSYTFILQATKEVPNRTLHP----KRKTIGLRVPDNATALAL 132 Query: 128 IETYGHP-----LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 ++ G P L +P + +T+ I + + L+IDGG G E T V Sbjct: 133 LQELGEPILSCTLMLPEDDE----PLTDPYEI-RDRLEHAVDLVIDGGWC--GTEPTTV- 184 Query: 183 VQCEKKVRILRPGGLEI 199 + ++R G +I Sbjct: 185 IDMTDGTELIRQGKGDI 201 >gi|229525789|ref|ZP_04415194.1| hypothetical protein VCA_003425 [Vibrio cholerae bv. albensis VL426] gi|229339370|gb|EEO04387.1| hypothetical protein VCA_003425 [Vibrio cholerae bv. albensis VL426] Length = 206 Score = 42.4 bits (98), Expect = 0.098, Method: Compositional matrix adjust. Identities = 43/186 (23%), Positives = 75/186 (40%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + G + PT++ Y L N + R+ +I++ + D+S + Sbjct: 17 INQAVAIIRNGGVVVYPTDSGYALGCQLENKHGMERICQIRRLDDKHNFTLLCRDLSEIA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD + L K PGP T + T ++ L KT RVP L+E Sbjct: 77 LYARVDNTAFRLLKNNTPGPYTFIFK--GTKEVPRRLMNEKRKTIGIRVPNNKIALDLLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL S G + + + + +I++GG +G + T V + +V Sbjct: 135 ALGEPLMSTSLILPGNDFTESDPEEIRDRLEHAVDVILNGGY--LGQQPTTVIDFSDDEV 192 Query: 190 RILRPG 195 + R G Sbjct: 193 VVARVG 198 >gi|269303145|gb|ACZ33245.1| Sua5/YciO/YrdC/YwlC family protein [Chlamydophila pneumoniae LPCoLN] Length = 286 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 72/162 (44%), Gaps = 12/162 (7%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS--VDPL 79 G +A+PT+TVYG + A RLY +K R +V+ I ++ + + P Sbjct: 22 GKIVALPTDTVYGFVLSLYASEAEERLYALKDREPSKAFALYVNSIEDIENISGYPLSPT 81 Query: 80 SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPS 139 + LA+LF PG +TLV+ H +T FR+ + I + L S Sbjct: 82 AKKLAQLF-PGAITLVVK-------HRNPRFPKETLAFRIVDHSVVREIVDHCGTLIGTS 133 Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 AN S S + + + ++ I DG S GLEST+V Sbjct: 134 ANLSEFPSALTAQEVFADFADHDL-CIFDGPCSH-GLESTVV 173 >gi|152988004|ref|YP_001345419.1| hypothetical protein PSPA7_0023 [Pseudomonas aeruginosa PA7] gi|212288212|sp|A6UX84|RIMN_PSEA7 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|150963162|gb|ABR85187.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7] Length = 185 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 43/140 (30%), Positives = 57/140 (40%), Gaps = 21/140 (15%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI---CHVSDISMVK 71 A + G IA PTE V+GL D N A+ RL +K RP LI H+ + + Sbjct: 10 AARVVREGGVIAYPTEAVWGLGCDPWNEDAVYRLLALKARPVEKGLIVVAAHIHQLDFLL 69 Query: 72 KHASVDPLSLHLAKL--FWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVP-------- 120 + D + L +L WPGP T L+ D P T + RV Sbjct: 70 E----DLPDVWLERLAGTWPGPNTW---LVPHQDRLPEWVTGVHDSVAVRVTDHPLVQEL 122 Query: 121 CGFTKKLIETYGHPLAIPSA 140 C T LI T +P P+A Sbjct: 123 CYLTGPLISTSANPAGRPAA 142 >gi|71908079|ref|YP_285666.1| Sua5/YciO/YrdC/YwlC [Dechloromonas aromatica RCB] gi|71847700|gb|AAZ47196.1| Sua5/YciO/YrdC/YwlC [Dechloromonas aromatica RCB] Length = 208 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 7/112 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +A EF+ G +A+PT++ Y L + A+ ++ I++ + L V D+S + Sbjct: 17 LAQAAEFIRNGAIVALPTDSCYALGCHLGDKEALDKIRLIRQMDDRHHLTLMVRDLSEIA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLD---LLSTTDIHPLSTANLKTACFRVP 120 A VD L K PG T +L+ L +HP KT RVP Sbjct: 77 HFARVDNAQYRLLKAATPGSYTFILEGSKELPRRVMHP----KRKTIGLRVP 124 >gi|241758536|ref|ZP_04756654.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria flavescens SK114] gi|241321309|gb|EER57463.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria flavescens SK114] Length = 206 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 49/197 (24%), Positives = 81/197 (41%), Gaps = 21/197 (10%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A + + G I PT++ Y L + A+ R+ I+K + L +D+S + Sbjct: 17 IKQAADIVRGGGVIVYPTDSCYALGCKLGDKNAMERILTIRKIDQKHHLTLMCADLSELG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDL---LSTTDIHPLSTANLKTACFRVPCGFTK-KL 127 +A VD K PG T +L + +HP KT RVP T L Sbjct: 77 TYAKVDNAQFRQLKAATPGSYTFILQATKEVPNRTLHP----KRKTIGLRVPDNATALAL 132 Query: 128 IETYGHP-----LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 ++ G P L +P + +T+ I + + L+IDGG G E T V Sbjct: 133 LQELGEPILSCTLMLPEDDE----PLTDPYEI-RDRLEHAVDLVIDGGWC--GTEPTTV- 184 Query: 183 VQCEKKVRILRPGGLEI 199 + ++R G +I Sbjct: 185 IDMTDGTELIRQGKGDI 201 >gi|254492266|ref|ZP_05105440.1| Sua5/YciO/YrdC/YwlC family protein [Methylophaga thiooxidans DMS010] gi|224462591|gb|EEF78866.1| Sua5/YciO/YrdC/YwlC family protein [Methylophaga thiooxydans DMS010] Length = 207 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 72/162 (44%), Gaps = 6/162 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++AC+ + G + PT++ Y L + + R+ I++ A + D+S + Sbjct: 17 IKQACDIIRRGGLVVYPTDSGYALGCQIGDKNTMDRIRRIRQLDADHNFTLVCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKKLIE 129 +A + L K PG T VL +T ++ L KT R+P L+E Sbjct: 77 TYAKFNNAVFRLLKAHTPGSYTFVLP--ATKEVPKRLQHPKRKTIGLRIPEHTIALALLE 134 Query: 130 TYGHPLAIPSANRSG-QISITNVKHILSSSICKEIPLIIDGG 170 PL + G + +T+ + I+ +I K + LIIDGG Sbjct: 135 ELDEPLMSSTLILPGDDLPMTDAEDIV-DAIGKHVDLIIDGG 175 >gi|229520393|ref|ZP_04409818.1| hypothetical protein VIF_000914 [Vibrio cholerae TM 11079-80] gi|229342491|gb|EEO07484.1| hypothetical protein VIF_000914 [Vibrio cholerae TM 11079-80] Length = 206 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 43/186 (23%), Positives = 75/186 (40%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + G + PT++ Y L N + R+ +I++ + D+S + Sbjct: 17 INQAVAIIRNGGVVVYPTDSGYALGCQLENKYGMERICQIRRLDDKHNFTLLCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD + L K PGP T + T ++ L KT RVP L+E Sbjct: 77 LYARVDNTAFRLLKNNTPGPYTFIFK--GTKEVPRRLMNEKRKTIGIRVPNNKIALDLLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL S G + + + + +I++GG +G + T V + +V Sbjct: 135 ALGEPLMSTSLILPGNDFTESDPEEIRDRLEHAVDVILNGGY--LGQQPTTVIDFSDDEV 192 Query: 190 RILRPG 195 + R G Sbjct: 193 VVARVG 198 >gi|323497600|ref|ZP_08102617.1| hypothetical protein VISI1226_22275 [Vibrio sinaloensis DSM 21326] gi|323317349|gb|EGA70343.1| hypothetical protein VISI1226_22275 [Vibrio sinaloensis DSM 21326] Length = 206 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 44/186 (23%), Positives = 75/186 (40%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + G + PT++ Y L N A+ R+ +I++ + D+S + Sbjct: 17 INQAVAIIRNGGVVVYPTDSGYALGCQLENKQALERICQIRRLNEKHNFTLLCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD + L K PGP T + T ++ L + KT RVP L+E Sbjct: 77 LYARVDNTAFRLLKNNTPGPYTFIFK--GTKEVPRRLMNSKRKTIGIRVPDNRIALDLLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G P+ S G + + + + I++GG +G + T V E + Sbjct: 135 ALGEPMMSTSLILPGNDYTESDPEDIRDKLEHAVDCILNGGY--LGEQPTTVVDFSEDEP 192 Query: 190 RILRPG 195 I R G Sbjct: 193 VIARVG 198 >gi|217966526|ref|YP_002352032.1| (NiFe) hydrogenase maturation protein HypF [Dictyoglomus turgidum DSM 6724] gi|217335625|gb|ACK41418.1| (NiFe) hydrogenase maturation protein HypF [Dictyoglomus turgidum DSM 6724] Length = 741 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 36/139 (25%), Positives = 60/139 (43%), Gaps = 4/139 (2%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + K ++L+ G +AI + LA D+ ++RL E KKRP+ P + DI Sbjct: 192 DKDIFEKIAKYLEEGKILAIKGMGGFHLACDATKEDIVKRLRERKKRPS-KPFALMMKDI 250 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 M+K++ V + K P+ L L DI PL K +P + Sbjct: 251 EMIKEYCFVSKEEEKILKS-KEAPIVL-LRTRELKDISPLVAPGNKYLGVMLPYTPYHHL 308 Query: 127 LIETYGHPLAIPSANRSGQ 145 + + + P+ + S N S + Sbjct: 309 IFDYFKKPIIMTSGNLSDE 327 >gi|318605611|emb|CBY27109.1| ycio family [Yersinia enterocolitica subsp. palearctica Y11] Length = 206 Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust. Identities = 43/186 (23%), Positives = 77/186 (41%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + ++ + L G + PT++ Y L + TA+ R+ I++ + D+S + Sbjct: 17 INQSVDVLRKGGVVVYPTDSGYALGCRLEDKTAMERICRIRQLDGNHNFTLVCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD + L K PG T + +T ++ L KT RVP L++ Sbjct: 77 TYAYVDNPAFRLIKNNTPGNYTFIFK--ATKEVPRRLMNDKRKTIGLRVPSNPIALALLD 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL + G + + + K++ LII GG +G + T V + Sbjct: 135 VLGEPLMSTTLMLPGNDFAESDPEEIKEHLGKQVDLIIHGG--SLGQQPTTVIDLTDSSP 192 Query: 190 RILRPG 195 ++R G Sbjct: 193 EVIRVG 198 >gi|262376934|ref|ZP_06070161.1| YrdC [Acinetobacter lwoffii SH145] gi|262308279|gb|EEY89415.1| YrdC [Acinetobacter lwoffii SH145] Length = 189 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 35/63 (55%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ +A +L G +A PTE V+GL D N A ++ E+K+RP +I + +S Sbjct: 3 TTSVAEAAAWLKDGQVLAYPTEAVWGLGCDPYNEQAFHQILELKQRPIEKGVILLAAHLS 62 Query: 69 MVK 71 V+ Sbjct: 63 QVE 65 >gi|224082001|ref|XP_002195111.1| PREDICTED: yrdC domain containing (E. coli) [Taeniopygia guttata] Length = 162 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 58/123 (47%), Gaps = 15/123 (12%) Query: 82 HLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIP 138 L + PGP+TLVL+ D++P ++ R+P F + L PLA+ Sbjct: 25 QLLRDLLPGPVTLVLERSEELNKDLNPFTS----LVGVRIPDHPFMRDLARACSGPLALT 80 Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGG-ISKIG-----LESTIVNVQCEKKVRIL 192 SAN S Q S V + ++ L++DGG I I L ST+V++ K I+ Sbjct: 81 SANISSQGSTLTVLEF--QDLWPQLSLVVDGGPIGDIQSPECRLGSTVVDLSVSGKFSII 138 Query: 193 RPG 195 RPG Sbjct: 139 RPG 141 >gi|167624539|ref|YP_001674833.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella halifaxensis HAW-EB4] gi|167354561|gb|ABZ77174.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella halifaxensis HAW-EB4] Length = 206 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 47/190 (24%), Positives = 82/190 (43%), Gaps = 6/190 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + +G I PT++ Y L + A+ ++ I++ + D S + Sbjct: 17 ISQAVNVIKSGGVIVYPTDSGYALGCLIGDKNAMSKIARIRQIDNDHNFSLMCRDQSELA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-KLIET 130 +A VD + L K PGP T + + S L KT RVP L+E Sbjct: 77 TYARVDNQAYRLLKQNTPGPYTFIF-MASKEVPKRLQNPKKKTIGIRVPDNVIALALLEA 135 Query: 131 YGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL S GQ + ++ +HI + ++ LII GG +G + T V + ++ Sbjct: 136 LGEPLMSTSLILPGQEFTESDPEHI-RDILEHQVDLIIHGGY--LGEKPTTVIDLSDGEI 192 Query: 190 RILRPGGLEI 199 ++R G ++ Sbjct: 193 EVIREGAGDV 202 >gi|209522642|ref|ZP_03271200.1| Sua5/YciO/YrdC/YwlC family protein [Arthrospira maxima CS-328] gi|209496691|gb|EDZ96988.1| Sua5/YciO/YrdC/YwlC family protein [Arthrospira maxima CS-328] Length = 222 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 50/205 (24%), Positives = 81/205 (39%), Gaps = 37/205 (18%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 + L G + PT+TVY + D +A++++ +IK+ PL S +S + +A V Sbjct: 22 DALKRGAVMLYPTDTVYAIGCDLTVKSAVQKVRQIKQISNDKPLTFLCSSLSNIADYAIV 81 Query: 77 DPLSLHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVPCGFTKKLIETYGHP 134 + K PG T V L T + P + + KT RVP HP Sbjct: 82 TDAAYRTIKRLIPGSYTFV---LPATKLVPKLVMSPKRKTTGIRVP-----------DHP 127 Query: 135 LAIPSANRSGQISITNVKHILS----SSICKEIP-----------------LIIDGGISK 173 + + G I+ HI S++ K+IP +I+D G Sbjct: 128 VCLAILESLGNPVISTSAHIKEEDEPSALIKKIPQEYDKVQLFDALENLVDIIVDDGADW 187 Query: 174 IGLESTIVNVQCEKKVRILRPGGLE 198 STI+++ + V + R G E Sbjct: 188 DYQVSTIIDLSADDPVLVRRGKGWE 212 >gi|219557202|ref|ZP_03536278.1| hypothetical protein MtubT1_07815 [Mycobacterium tuberculosis T17] Length = 193 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 51/190 (26%), Positives = 89/190 (46%), Gaps = 14/190 (7%) Query: 25 IAIPTETVYGLAV---DSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLS 80 + +PT+TVYG+A SR P R+ + A+ P+ V ++ S+ + Sbjct: 7 VVMPTDTVYGIARRFDSSRWPRCCRQRGGV----AICPVGVLVGSWHTIEGLVYSMPDGA 62 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPS 139 L + FWPG L+LV+ + + + L A+ T R+P +L+ G P+A+ S Sbjct: 63 RELIRAFWPGALSLVV-VQAPSLQWDLGDAH-GTVMLRMPLHPVAIELLREVG-PMAVSS 119 Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEI 199 AN SG + + S + + + +D G S+ STIV++ R+LR G + Sbjct: 120 ANISGHPPPVDAEQA-RSQLGDHVAVYLDAGPSEQQAGSTIVDLTGATP-RVLRQGPVST 177 Query: 200 ETLKRAISVE 209 E + + V+ Sbjct: 178 ERIAEVLGVD 187 >gi|15641191|ref|NP_230823.1| hypothetical protein VC1178 [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587790|ref|ZP_01677549.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|121728251|ref|ZP_01681284.1| conserved hypothetical protein [Vibrio cholerae V52] gi|153215328|ref|ZP_01949941.1| conserved hypothetical protein [Vibrio cholerae 1587] gi|153819097|ref|ZP_01971764.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|153823502|ref|ZP_01976169.1| conserved hypothetical protein [Vibrio cholerae B33] gi|153826680|ref|ZP_01979347.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|153829624|ref|ZP_01982291.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|183179583|ref|ZP_02957794.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|227081350|ref|YP_002809901.1| hypothetical protein VCM66_1133 [Vibrio cholerae M66-2] gi|229505228|ref|ZP_04394738.1| hypothetical protein VCF_000436 [Vibrio cholerae BX 330286] gi|229511102|ref|ZP_04400581.1| hypothetical protein VCE_002509 [Vibrio cholerae B33] gi|229515559|ref|ZP_04405018.1| hypothetical protein VCB_003217 [Vibrio cholerae TMA 21] gi|229518221|ref|ZP_04407665.1| hypothetical protein VCC_002245 [Vibrio cholerae RC9] gi|229529734|ref|ZP_04419124.1| hypothetical protein VCG_002831 [Vibrio cholerae 12129(1)] gi|229608247|ref|YP_002878895.1| hypothetical protein VCD_003165 [Vibrio cholerae MJ-1236] gi|254226704|ref|ZP_04920281.1| conserved hypothetical protein [Vibrio cholerae V51] gi|254291997|ref|ZP_04962776.1| conserved hypothetical protein [Vibrio cholerae AM-19226] gi|254848304|ref|ZP_05237654.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|255745588|ref|ZP_05419536.1| YrdC family protein [Vibrio cholera CIRS 101] gi|262158339|ref|ZP_06029455.1| YrdC family protein [Vibrio cholerae INDRE 91/1] gi|262169497|ref|ZP_06037189.1| YrdC family protein [Vibrio cholerae RC27] gi|262191634|ref|ZP_06049812.1| YrdC family protein [Vibrio cholerae CT 5369-93] gi|297578778|ref|ZP_06940706.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|298498720|ref|ZP_07008527.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio cholerae MAK 757] gi|9655654|gb|AAF94337.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547954|gb|EAX58035.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|121629502|gb|EAX61928.1| conserved hypothetical protein [Vibrio cholerae V52] gi|124114771|gb|EAY33591.1| conserved hypothetical protein [Vibrio cholerae 1587] gi|125620765|gb|EAZ49122.1| conserved hypothetical protein [Vibrio cholerae V51] gi|126510380|gb|EAZ72974.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|126518970|gb|EAZ76193.1| conserved hypothetical protein [Vibrio cholerae B33] gi|148874900|gb|EDL73035.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|149739542|gb|EDM53770.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|150422074|gb|EDN14042.1| conserved hypothetical protein [Vibrio cholerae AM-19226] gi|183012994|gb|EDT88294.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|227009238|gb|ACP05450.1| conserved hypothetical protein [Vibrio cholerae M66-2] gi|229333508|gb|EEN98994.1| hypothetical protein VCG_002831 [Vibrio cholerae 12129(1)] gi|229344936|gb|EEO09910.1| hypothetical protein VCC_002245 [Vibrio cholerae RC9] gi|229347328|gb|EEO12288.1| hypothetical protein VCB_003217 [Vibrio cholerae TMA 21] gi|229351067|gb|EEO16008.1| hypothetical protein VCE_002509 [Vibrio cholerae B33] gi|229357451|gb|EEO22368.1| hypothetical protein VCF_000436 [Vibrio cholerae BX 330286] gi|229370902|gb|ACQ61325.1| hypothetical protein VCD_003165 [Vibrio cholerae MJ-1236] gi|254844009|gb|EET22423.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|255736663|gb|EET92060.1| YrdC family protein [Vibrio cholera CIRS 101] gi|262022310|gb|EEY41019.1| YrdC family protein [Vibrio cholerae RC27] gi|262029780|gb|EEY48428.1| YrdC family protein [Vibrio cholerae INDRE 91/1] gi|262032476|gb|EEY51036.1| YrdC family protein [Vibrio cholerae CT 5369-93] gi|297536372|gb|EFH75205.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|297543053|gb|EFH79103.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio cholerae MAK 757] gi|327483879|gb|AEA78286.1| YciO family [Vibrio cholerae LMA3894-4] Length = 206 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 43/186 (23%), Positives = 75/186 (40%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + G + PT++ Y L N + R+ +I++ + D+S + Sbjct: 17 INQAVAIIRNGGVVVYPTDSGYALGCQLENKHGMERICQIRRLDDKHNFTLLCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD + L K PGP T + T ++ L KT RVP L+E Sbjct: 77 LYARVDNTAFRLLKNNTPGPYTFIFK--GTKEVPRRLMNEKRKTIGIRVPNNKIALDLLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL S G + + + + +I++GG +G + T V + +V Sbjct: 135 ALGEPLMSTSLILPGNDFTESDPEEIRDRLEHAVDVILNGGY--LGQQPTTVIDFSDDEV 192 Query: 190 RILRPG 195 + R G Sbjct: 193 VVARVG 198 >gi|258621658|ref|ZP_05716689.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|258626397|ref|ZP_05721244.1| conserved hypothetical protein [Vibrio mimicus VM603] gi|262171790|ref|ZP_06039468.1| YrdC family protein [Vibrio mimicus MB-451] gi|258581449|gb|EEW06351.1| conserved hypothetical protein [Vibrio mimicus VM603] gi|258585889|gb|EEW10607.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|261892866|gb|EEY38852.1| YrdC family protein [Vibrio mimicus MB-451] Length = 206 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 42/186 (22%), Positives = 76/186 (40%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + G + PT++ Y + N + R+ +I++ + D+S + Sbjct: 17 INQAVAIIRNGGVVVYPTDSGYAVGCQLENKHGMERICQIRRLDDKHNFTLLCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD + L K PGP T + T ++ L KT RVP L+E Sbjct: 77 LYARVDNTAFRLLKNNTPGPYTFIFK--GTKEVPRRLMNEKRKTIGIRVPDNKIALDLLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL S G + + S+ + +I++GG +G + T V + ++ Sbjct: 135 ALGEPLMSTSLILPGNDFTESDPEAIRDSLEHAVDVILNGGY--LGQQPTTVIDFSDDEI 192 Query: 190 RILRPG 195 + R G Sbjct: 193 VVARVG 198 >gi|90581221|ref|ZP_01237019.1| putative translation factor [Vibrio angustum S14] gi|90437592|gb|EAS62785.1| putative translation factor [Vibrio angustum S14] Length = 206 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 45/190 (23%), Positives = 80/190 (42%), Gaps = 6/190 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E + G + PT++ Y L N A+ R+ +I++ + D+S + Sbjct: 17 IKQAVEIIKNGGVVVYPTDSGYALGCQLENKQALERICQIRRLNEKHNFTLLCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 + VD ++ L + PG T + T ++ L A KT RVP L+E Sbjct: 77 LYTRVDNIAFRLLRNNTPGAYTFIFK--GTKEVPRRLMNAKRKTIGIRVPDNAIALALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL S G + + + + LI+ GG +G + T V E ++ Sbjct: 135 ALGEPLMSTSLILPGNETTEADPDEIRDKLEHAVDLIMHGGY--LGEQPTTVIDFSEGEI 192 Query: 190 RILRPGGLEI 199 I+R G ++ Sbjct: 193 NIVRVGAGDV 202 >gi|329957163|ref|ZP_08297730.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides clarus YIT 12056] gi|328523431|gb|EGF50530.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides clarus YIT 12056] Length = 204 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 1/87 (1%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSDISMV 70 L++ + L+ G I PT+T+Y + AI R+ ++K P N L D+S + Sbjct: 15 LQQVIDILNDGGIIIYPTDTMYAIGCHGLKERAIERICQLKNIDPKKNNLSIICYDLSSI 74 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLD 97 ++A D + L K PG T +L+ Sbjct: 75 SEYAKFDNNTFKLMKRNLPGAFTFILN 101 >gi|253998631|ref|YP_003050694.1| Sua5/YciO/YrdC/YwlC family protein [Methylovorus sp. SIP3-4] gi|253985310|gb|ACT50167.1| Sua5/YciO/YrdC/YwlC family protein [Methylovorus sp. SIP3-4] Length = 209 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 68/161 (42%), Gaps = 8/161 (4%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIK--KRPAMNPLICHVSDISMVK 71 +A E L G +A PT++ Y L N A R+ I+ + L+C ++S + Sbjct: 19 QAVEILRNGGVVAYPTDSSYALGCVVGNKDAQDRIRAIRGVDDDHLFTLVCR--NLSELA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129 +A VD L K PG T +L +T ++ L T RVP T+ L+E Sbjct: 77 VYAQVDNSQFRLLKANTPGQYTFILK--ATREVPRRLQHPKRSTLGLRVPDHAVTQALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 PL S G+ + N + + ++ L+ID G Sbjct: 135 ALDEPLLSMSLQLPGEEDVLNEAWEIRDRLEHQLDLVIDAG 175 >gi|53729058|ref|ZP_00134151.2| COG0009: Putative translation factor (SUA5) [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208629|ref|YP_001053854.1| hypothetical protein APL_1161 [Actinobacillus pleuropneumoniae L20] gi|165976587|ref|YP_001652180.1| putative translation factor [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190150488|ref|YP_001969013.1| hypothetical protein APP7_1219 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303250090|ref|ZP_07336292.1| putative translation factor [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303253263|ref|ZP_07339412.1| putative translation factor [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307246076|ref|ZP_07528158.1| hypothetical protein appser1_12790 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307248184|ref|ZP_07530212.1| hypothetical protein appser2_11650 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307252800|ref|ZP_07534690.1| hypothetical protein appser6_13130 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307255058|ref|ZP_07536876.1| hypothetical protein appser9_12920 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307257216|ref|ZP_07538987.1| hypothetical protein appser10_12150 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307259494|ref|ZP_07541219.1| hypothetical protein appser11_12910 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307261644|ref|ZP_07543311.1| hypothetical protein appser12_12040 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307263832|ref|ZP_07545437.1| hypothetical protein appser13_12420 [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|126097421|gb|ABN74249.1| hypothetical protein APL_1161 [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165876688|gb|ABY69736.1| putative translation factor [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189915619|gb|ACE61871.1| hypothetical protein APP7_1219 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302647945|gb|EFL78152.1| putative translation factor [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302651153|gb|EFL81307.1| putative translation factor [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306853011|gb|EFM85234.1| hypothetical protein appser1_12790 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306855361|gb|EFM87536.1| hypothetical protein appser2_11650 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306859699|gb|EFM91722.1| hypothetical protein appser6_13130 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306861931|gb|EFM93907.1| hypothetical protein appser9_12920 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306864258|gb|EFM96170.1| hypothetical protein appser10_12150 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306866430|gb|EFM98293.1| hypothetical protein appser11_12910 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306868636|gb|EFN00446.1| hypothetical protein appser12_12040 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306870821|gb|EFN02560.1| hypothetical protein appser13_12420 [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 205 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 55/194 (28%), Positives = 81/194 (41%), Gaps = 15/194 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E + G I PT++ Y L A+ R+ I+K P + SD+S + Sbjct: 17 INQAVEIIKNGGVIIYPTDSGYALGCAIGEKHAMDRIVAIRKLPENHNFTLVCSDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 +A V S L K P P T +L +T D+ KT RVP LI Sbjct: 77 TYALVTNQSYRLIKNNTPNPYTFILP--ATKDVPRRLMTKRKTIGIRVPDNAIALALIAA 134 Query: 131 YGHP-----LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 G P L +P +I+ ++ I + + LII GG +G E T V Sbjct: 135 LGEPILSCSLMLPDT----EITESDPDEI-REHLEHRVDLIIHGGY--LGQEPTTVIDLT 187 Query: 186 EKKVRILRPGGLEI 199 E+ RI+R G +I Sbjct: 188 EESPRIIREGSGDI 201 >gi|295396779|ref|ZP_06806914.1| Sua5/YciO/YrdC/YwlC family protein [Brevibacterium mcbrellneri ATCC 49030] gi|294970363|gb|EFG46303.1| Sua5/YciO/YrdC/YwlC family protein [Brevibacterium mcbrellneri ATCC 49030] Length = 211 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 8/123 (6%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN--PLICHVSDISMVKKHA 74 + ++ G IA PT++ Y L N I R+ I++ A + L+CH D + + + Sbjct: 22 DVINNGGLIAYPTDSCYALGCSLDNKDGIERITRIRQLSAKHHFTLMCH--DFAQLGQFV 79 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIETYG 132 VD + K PGP T +L +T ++ + A KT R+P + LIE G Sbjct: 80 IVDNSAFRTIKALTPGPYTFILK--ATKEVPRRMLHAKKKTVGARIPQNRLSLDLIEQVG 137 Query: 133 HPL 135 P+ Sbjct: 138 EPI 140 >gi|328676531|gb|AEB27401.1| Sua5 YciO YrdC YwlC family protein [Francisella cf. novicida Fx1] Length = 204 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 51/192 (26%), Positives = 86/192 (44%), Gaps = 8/192 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++ LD IAIPT++ Y LA ++ I ++ +I+ + + D+S + Sbjct: 17 LKELANILDNDGVIAIPTDSGYALACRMKSKKGIDKIIKIRNLDSSHNFTLCCKDLSEIS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCGFTKKLIET 130 ++A VD + L K + PG T +L+ +T + L T + T RV + + I Sbjct: 77 EYAKVDNNAYRLLKRYTPGSYTFILN--ATKKVSSLLVTKSKNTVGIRVSEHYVPRAISA 134 Query: 131 -YGHPLAIPSANRSG-QISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 G PL I S G Q +T+ + S I + +++ G + T V E Sbjct: 135 EIGEPLVISSFIVPGHQYVVTDCAEV-DSQIMNYLDAVVES--DYCGYDQTTVVELLELP 191 Query: 189 VRILRPGGLEIE 200 +ILR G EI+ Sbjct: 192 YQILRQGAGEID 203 >gi|321309523|ref|YP_004191852.1| putative translation factor/ribosome maturation factor [Mycoplasma haemofelis str. Langford 1] gi|319801367|emb|CBY92013.1| putative translation factor / ribosome maturation factor [Mycoplasma haemofelis str. Langford 1] Length = 156 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 47/176 (26%), Positives = 76/176 (43%), Gaps = 33/176 (18%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 + +G I T++V+G+ ++ +Y +KKRP LI +S S + P Sbjct: 9 IKSGKAAIIATDSVFGIISKDKD-----LIYSLKKRPKEKQLILFISSASELP-----SP 58 Query: 79 LSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHP 134 + L +L WPG T++ K +RVP K+++ G P Sbjct: 59 IPKDLEELVTSRWPGTFTII----------------YKGQGYRVPESNLLIKILKKTG-P 101 Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 L SAN SG+ + +++ + SI E L I G + G STI + +K VR Sbjct: 102 LWSSSANLSGEPVVKDLEE--AKSIFGEGILYIKGDVVPTGTPSTIYDYDNKKLVR 155 >gi|298493040|ref|YP_003723217.1| SUA5/yciO/yrdC domain-containing protein ['Nostoc azollae' 0708] gi|298234958|gb|ADI66094.1| SUA5/yciO/yrdC domain protein ['Nostoc azollae' 0708] Length = 192 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 58/138 (42%), Gaps = 8/138 (5%) Query: 21 AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80 AG I+ PT TV LA P +Y K+R PLI + + + + Sbjct: 14 AGKLISFPTGTVPALATI---PEQAELIYAAKQRSLDKPLILMAAKTEDLWDYVQGSDIE 70 Query: 81 LHLAK----LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLA 136 H+ + +WPG LTLVL S ++ + T RVP + I + P+A Sbjct: 71 YHIWQEVVNRYWPGALTLVLP-ASNKISQVMNPTDPTTIGIRVPNHTVAQTILAHTGPMA 129 Query: 137 IPSANRSGQISITNVKHI 154 S N SGQ ++ + I Sbjct: 130 TTSVNLSGQPALQTLAEI 147 >gi|254430370|ref|ZP_05044073.1| hypothetical protein CPCC7001_260 [Cyanobium sp. PCC 7001] gi|197624823|gb|EDY37382.1| hypothetical protein CPCC7001_260 [Cyanobium sp. PCC 7001] Length = 202 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 59/132 (44%), Gaps = 9/132 (6%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK--HA 74 E L G +PT+T+ LA P +++ +K RPA PLI +D+ + Sbjct: 19 ERLRGGEAALLPTDTLPALAA---CPDHADQIWTLKSRPAEKPLILMGADLEQLLPLLGG 75 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGH 133 LHL WPG LTLVL ++ + + R+P C + L+ G Sbjct: 76 PWRQEWLHLGHQGWPGALTLVLP--ASGPVAAALNPGRGSLGLRIPACEQARALLRLSG- 132 Query: 134 PLAIPSANRSGQ 145 PLA SAN SG+ Sbjct: 133 PLATTSANPSGR 144 >gi|325121146|gb|ADY80669.1| hypothetical protein BDGL_000083 [Acinetobacter calcoaceticus PHEA-2] Length = 195 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 42/172 (24%), Positives = 72/172 (41%), Gaps = 10/172 (5%) Query: 28 PTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLF 87 PT+ Y + N A+ R+ +I+ + D+S + +A VD + L K Sbjct: 22 PTDAAYAIGCQIGNKNAMERIAQIRGLGPKHQYAIMCCDLSDIATYAKVDNATYRLLKAN 81 Query: 88 WPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRS 143 P T +L S +HP KT R+P + L++ G PL + Sbjct: 82 TPAITTFILPATSEVPRRLMHP----KKKTIGLRIPSNPICQALLKELGEPLLTSTLILP 137 Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 GQ + + + + + K I + IDGG + ++IV++ E I+R G Sbjct: 138 GQEDPLDDPYDIENQLDKRIEVFIDGGFGTL-TSTSIVDLSGEHP-EIIRRG 187 >gi|160872342|ref|ZP_02062474.1| Sua5/YciO/YrdC/YwlC family protein [Rickettsiella grylli] gi|159121141|gb|EDP46479.1| Sua5/YciO/YrdC/YwlC family protein [Rickettsiella grylli] Length = 208 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 51/185 (27%), Positives = 77/185 (41%), Gaps = 14/185 (7%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 I PT++ Y L N I+R+ +I++ + L DIS + A ++ L Sbjct: 30 IVYPTDSAYALGCQLTNKKGIQRIKQIRQLKDQHSLTLLCRDISEMAHFAQLETPIFRLI 89 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP-----LAIP 138 K PGP T +L S + L A KT R+P L+E P L +P Sbjct: 90 KANTPGPYTFLLPATSHVPRY-LIHAKRKTIGIRIPDNKIVHALLEMNDQPLINTTLILP 148 Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLE 198 ++ + ++ IL K + L+IDGG GLE T V I+R G E Sbjct: 149 DSDLP-LLEPEAIRDILG----KRVDLVIDGGFC--GLELTTVIDLSGHIPHIIRCGKGE 201 Query: 199 IETLK 203 I+ + Sbjct: 202 IKPFQ 206 >gi|304399252|ref|ZP_07381118.1| SUA5/yciO/yrdC domain protein [Pantoea sp. aB] gi|304353178|gb|EFM17559.1| SUA5/yciO/yrdC domain protein [Pantoea sp. aB] Length = 190 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 38/170 (22%), Positives = 73/170 (42%), Gaps = 35/170 (20%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83 IA PTE V+GL D + +A+ L +K+RP LI +D + ++ + S LS + Sbjct: 23 IAYPTEAVFGLGCDPDSESAVMALLALKQRPVEKGLILIAADYTQLEPYISARELSVMQR 82 Query: 84 AKLF--W--------------PGPLTLVLDLLSTT-----DIHPL----------STANL 112 ++F W P LT D L+ D+ L ++ANL Sbjct: 83 ERMFACWPGPVTFVVPVPPQTPRWLTGQFDSLAIRVSDHPDVQALCRAFGKPLVSTSANL 142 Query: 113 KTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKE 162 PC +++ + +G + S G+++ + ++ ++S + ++ Sbjct: 143 SGL---PPCRTAEEVKQQFGEHFPVLSGKTGGRLNPSEIRDVISGELIRQ 189 >gi|307543967|ref|YP_003896446.1| translation factor [Halomonas elongata DSM 2581] gi|307215991|emb|CBV41261.1| K07566 putative translation factor [Halomonas elongata DSM 2581] Length = 195 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 45/188 (23%), Positives = 75/188 (39%), Gaps = 3/188 (1%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 +++ +++L A L G IA PTE V+GL D + +A+ RL IK+R +I Sbjct: 9 ITMLQASSLDTAVAALREGGVIAYPTEAVWGLGCDPDDTSALTRLLRIKRRDPAKGVILV 68 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 +D+ P A L P + L RV Sbjct: 69 AADLDQFSPWLEGLP-DERRAVLAEPQAQPTTWLVPDNGRAAELVRGEHDKVALRVSDHP 127 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 +L +G PL SANR+G+ S + + + E+ ++DG + STI + Sbjct: 128 LVGELCRAFGGPLVSTSANRAGEPSAMSAEEV-RRVFGDELDALLDGPLGGHTRPSTIRD 186 Query: 183 VQCEKKVR 190 + + +R Sbjct: 187 LATGRVLR 194 >gi|261253232|ref|ZP_05945805.1| YrdC family protein [Vibrio orientalis CIP 102891] gi|260936623|gb|EEX92612.1| YrdC family protein [Vibrio orientalis CIP 102891] Length = 206 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 43/186 (23%), Positives = 76/186 (40%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + G + PT++ Y L N A+ R+ +I++ + D+S + Sbjct: 17 INQAVAIIRNGGVVVYPTDSGYALGCQLENKQALERICQIRRLDDKHNFTLLCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD + L K PGP T + T ++ L + KT RVP L+E Sbjct: 77 LYARVDNGAFRLLKNNTPGPFTFIFK--GTKEVPRRLMNSKRKTIGIRVPDNRIALDLLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL S G + + + + I++GG +G + T V + + Sbjct: 135 ALGEPLMSTSLILPGNDITESDPEDIRDKLEHAVDCILNGGY--LGEQPTTVIDFSDDEP 192 Query: 190 RILRPG 195 ++ R G Sbjct: 193 KVARLG 198 >gi|92112840|ref|YP_572768.1| Sua5/YciO/YrdC/YwlC [Chromohalobacter salexigens DSM 3043] gi|91795930|gb|ABE58069.1| Sua5/YciO/YrdC/YwlC [Chromohalobacter salexigens DSM 3043] Length = 206 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 42/170 (24%), Positives = 71/170 (41%), Gaps = 9/170 (5%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L G IA PT++ Y L + AI ++ ++ + SD+S + +A VD Sbjct: 24 LRGGGVIAYPTDSGYALGCCLGDKKAIEKIKWLRSLDDKHNFTLMCSDLSEIGTYAKVDN 83 Query: 79 LSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134 L K PGP T +L+ S +HP ++ RVP T L++ G P Sbjct: 84 AVFRLLKAHTPGPYTFILNATSEVPRLLLHP----KRRSIGVRVPDHRITHALLDALGEP 139 Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 L + G+ ++ + +IDGG + +T+V+V+ Sbjct: 140 LMSVTLIPVGEDLPMTDPEVIRDRFGAHLDAVIDGGACHLD-PTTVVDVR 188 >gi|78485574|ref|YP_391499.1| Sua5/YciO/YrdC/YwlC [Thiomicrospira crunogena XCL-2] gi|78363860|gb|ABB41825.1| Sua5/YciO/YrdC/YwlC family protein [Thiomicrospira crunogena XCL-2] Length = 207 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 48/190 (25%), Positives = 73/190 (38%), Gaps = 4/190 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L + E L+ G IA PTE+ Y L N R+ I++ + D+S + Sbjct: 20 LLQVVEVLNKGGVIAYPTESGYALGCLLDNKEGADRIRAIRRLDEKHHFTLVCPDLSHLS 79 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGFTKKLIET 130 +A V + K PGP T +L S L T KT RV P T L+ Sbjct: 80 AYAKVGNVQFRYLKSHLPGPYTFILP-ASREVPRRLQTPKRKTIGLRVTPNVVTNALLSY 138 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 + PL S G+ + ++ + ++DGG G E T V + Sbjct: 139 FDKPLISVSLILPGEDLPMTDGWSIQETLGHALDAVLDGGFC--GFEPTTVIDFTDDVPE 196 Query: 191 ILRPGGLEIE 200 ++R G E + Sbjct: 197 LIRQGQGEFK 206 >gi|147674311|ref|YP_001216749.1| hypothetical protein VC0395_A0799 [Vibrio cholerae O395] gi|146316194|gb|ABQ20733.1| conserved hypothetical protein [Vibrio cholerae O395] gi|227013095|gb|ACP09305.1| conserved hypothetical protein [Vibrio cholerae O395] Length = 206 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 43/186 (23%), Positives = 75/186 (40%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + G + PT++ Y L N + R+ +I++ + D+S + Sbjct: 17 INQAVAIIRNGGVVVYPTDSGYALGCQLENKHGMERICQIRRLDDKHNFTLLCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD + L K PGP T + T ++ L KT RVP L+E Sbjct: 77 LYARVDNTAFRLLKNNTPGPYTFIFK--GTKEVPRRLMNEKRKTIGIRVPNNKIALDLLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL S G + + + + +I++GG +G + T V + +V Sbjct: 135 VLGEPLMSTSLILPGNDFTESDPEEIRDRLEHAVDVILNGGY--LGQQPTTVIDFSDDEV 192 Query: 190 RILRPG 195 + R G Sbjct: 193 VVARVG 198 >gi|27366331|ref|NP_761859.1| YciO family [Vibrio vulnificus CMCP6] gi|37679408|ref|NP_934017.1| putative translation factor [Vibrio vulnificus YJ016] gi|320156839|ref|YP_004189218.1| YciO family [Vibrio vulnificus MO6-24/O] gi|27362532|gb|AAO11386.1| YciO family [Vibrio vulnificus CMCP6] gi|37198151|dbj|BAC93988.1| putative translation factor [Vibrio vulnificus YJ016] gi|319932151|gb|ADV87015.1| YciO family [Vibrio vulnificus MO6-24/O] Length = 206 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 41/172 (23%), Positives = 71/172 (41%), Gaps = 6/172 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + G + PT++ Y L N A+ R+ +I++ + D+S + Sbjct: 17 INQAVAIIRNGGVVVYPTDSGYALGCQLENKQALDRICQIRRLDEKHNFTLLCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD + L K PGP T + T ++ L A KT RVP L++ Sbjct: 77 IYARVDNTAFRLLKNNTPGPYTFIFK--GTKEVPRRLMNAKRKTIGIRVPDNRIALDLLD 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 G PL S G+ + + + +I++GG +G + T V Sbjct: 135 ALGEPLMSTSLILPGKEVTEADPEEIRDKLEHAVDVILNGGY--LGEQPTTV 184 >gi|289810569|ref|ZP_06541198.1| hypothetical protein Salmonellaentericaenterica_41842 [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 174 Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust. Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 8/171 (4%) Query: 28 PTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLF 87 PT++ Y L + A+ R+ I+ P + D+S + ++ VD ++ L K Sbjct: 1 PTDSGYALGCKIEDKGAMERICRIRHLPDGHNFTLMCRDLSELSTYSYVDNVAFRLMKNN 60 Query: 88 WPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQ 145 PG T +L T ++ L KT RVP L++T G P+ S G Sbjct: 61 TPGNYTFILK--GTKEVPRRLLQEKRKTIGLRVPSNPIALALLDTLGEPMLSTSLMLPGS 118 Query: 146 ISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKKVRILRPG 195 + + + K++ LII GG +G + +T++++ + V +LR G Sbjct: 119 DFTESDPEEIKDRLEKQVDLIIHGGY--LGQQPTTVIDLTNDSPV-VLREG 166 >gi|282899092|ref|ZP_06307073.1| SUA5/yciO/yrdC-like protein [Cylindrospermopsis raciborskii CS-505] gi|281196008|gb|EFA70924.1| SUA5/yciO/yrdC-like protein [Cylindrospermopsis raciborskii CS-505] Length = 190 Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust. Identities = 55/203 (27%), Positives = 85/203 (41%), Gaps = 25/203 (12%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 M+I+ +R A E G I+ PT+TV G+A PT +Y K+R PLI Sbjct: 1 MNISLDRLIRGAKE----GKIISFPTDTVPGMAT---IPTKAELIYIAKQRSLDKPLILM 53 Query: 64 VSD----ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACF 117 ++ VK + + +WPG LTLV L +D P ++ + T Sbjct: 54 GAEPESLWEYVKGSDQEYEIWQEVVNRYWPGALTLV---LPASDKVPRVMNPQDPTTIGI 110 Query: 118 RVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI---SKI 174 RVP + I P+A S N SG+ + + I E P ++ + + Sbjct: 111 RVPNHPIARAILAQTGPMATTSVNLSGKPPLET-----QAEIAGEFPDVLTEELIEYKGL 165 Query: 175 GLESTIVNVQCEKKVRILRPGGL 197 G+ ST+ E +ILR G + Sbjct: 166 GVPSTVAK-WTENHWQILRQGSI 187 >gi|254506994|ref|ZP_05119132.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio parahaemolyticus 16] gi|219549989|gb|EED26976.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio parahaemolyticus 16] Length = 206 Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust. Identities = 41/172 (23%), Positives = 70/172 (40%), Gaps = 6/172 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + G + PT++ Y L N A+ R+ +I++ + D+S + Sbjct: 17 INQAVAIIRNGGVVVYPTDSGYALGCQLENKQALERICQIRRLDEKHNFTLLCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD + L K PGP T + T ++ L + KT RVP L+E Sbjct: 77 LYARVDNSAFRLLKNNTPGPYTFIFK--GTKEVPRRLMNSKRKTIGIRVPDNQIALDLLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 G PL S G + + + + I++GG +G + T V Sbjct: 135 ALGEPLMSTSLILPGNDYTESDPEDIRDKLEHAVDCILNGGY--LGEQPTTV 184 >gi|262374665|ref|ZP_06067938.1| conserved hypothetical protein [Acinetobacter junii SH205] gi|262310455|gb|EEY91546.1| conserved hypothetical protein [Acinetobacter junii SH205] Length = 189 Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 33/63 (52%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +N++ +A + L G +A PTE V+GL D N A + + E+K RP +I + Sbjct: 3 TNSIAEAADCLKQGQVLAYPTEAVWGLGCDPFNQQAFQDILELKHRPVEKGVILLAGHLE 62 Query: 69 MVK 71 V+ Sbjct: 63 QVE 65 >gi|332968321|gb|EGK07392.1| translation factor RimN [Kingella kingae ATCC 23330] Length = 209 Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 57/138 (41%), Gaps = 3/138 (2%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L G +A PTE+ YGL N +R L +KKRP +I ++ S ++ H P Sbjct: 39 LKRGGVVAYPTESCYGLGALPDNVRGLRTLLRLKKRPQHKGMIVIGANWSQLQPHLCRLP 98 Query: 79 L-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLA 136 + + WP P T++L T + K A R+P + L + L Sbjct: 99 CDDVAALQAIWPAPKTVLLPAKPTVLPNLRGRGRNKLA-VRIPAHDIARGLCQQVQAALV 157 Query: 137 IPSANRSGQISITNVKHI 154 S NR+ Q N + + Sbjct: 158 STSCNRAKQRPCRNEREV 175 >gi|332749609|gb|EGJ80026.1| ribosome maturation factor [Shigella flexneri K-671] Length = 106 Score = 41.6 bits (96), Expect = 0.15, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 36/64 (56%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +A+ A + L+ IA PTE V+G+ D + TA+ RL E+K+RP LI ++ Sbjct: 8 DAIAAAIDVLNEKRVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQ 67 Query: 70 VKKH 73 +K + Sbjct: 68 LKPY 71 >gi|323144451|ref|ZP_08079054.1| Sua5/YciO/YrdC/YwlC family protein [Succinatimonas hippei YIT 12066] gi|322415766|gb|EFY06497.1| Sua5/YciO/YrdC/YwlC family protein [Succinatimonas hippei YIT 12066] Length = 207 Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust. Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 4/162 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 ++KAC +++G IPT++ Y L + + A+ R+ I+K + D+S + Sbjct: 18 IKKACSIIESGGVGVIPTDSAYALCCNIGDKNAMERIAAIRKISKKHNFTLICRDLSELS 77 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A V L K PG T +L +T ++ L +T RVP G + L+ Sbjct: 78 TYAKVSNNVFRLLKNNTPGAYTFILP--ATKEVPRRLMNEKKRTIGIRVPAGAIIEALLN 135 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171 PL S N ++ I + +I+DGG+ Sbjct: 136 ECSEPLLSCSLILPDHEEPENDPITINDEIGSIVDVIVDGGV 177 >gi|56460847|ref|YP_156128.1| Sua5 family translation factor [Idiomarina loihiensis L2TR] gi|56179857|gb|AAV82579.1| Possible translation factor, Sua5/YciO/YrdC/YwlC family [Idiomarina loihiensis L2TR] Length = 207 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 47/178 (26%), Positives = 71/178 (39%), Gaps = 6/178 (3%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 + PT++ Y + N A R+ +I++ + D+S + +A VD + L Sbjct: 30 VVYPTDSGYAIGCQIGNKAAADRICQIREIDKEHNFTLMCRDLSELATYARVDNDAFRLL 89 Query: 85 KLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142 K PGP T +L T ++ L KT RVP L+E PL S Sbjct: 90 KNNTPGPYTFILK--GTKEVPKRLLNPKRKTIGIRVPTNRIAMALLEELNEPLMSTSLIL 147 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200 + + + + K + LIIDGG G E T V E I R G ++E Sbjct: 148 GQGMLAESDPEEIRDKLEKLVDLIIDGGHK--GEEPTTVVDLSEGAPTIRREGSGDVE 203 >gi|166363633|ref|YP_001655906.1| putative translation factor [Microcystis aeruginosa NIES-843] gi|166086006|dbj|BAG00714.1| putative translation factor [Microcystis aeruginosa NIES-843] Length = 195 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 53/184 (28%), Positives = 78/184 (42%), Gaps = 12/184 (6%) Query: 21 AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS----MVKKHASV 76 +G ++ PT+TV LAV +P ++ KKR PLI + + V+ + Sbjct: 15 SGQVVSFPTDTVPALAV---SPPYAALIFAAKKRTFDKPLILMAASAADLWDYVEGNQEE 71 Query: 77 DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLA 136 + + + WPG LTLVL L+ N T RVP + I LA Sbjct: 72 REIWRQMTEKHWPGSLTLVLPAAEKVP-KVLNPKNPSTIGIRVPAHAIAREILGRTGVLA 130 Query: 137 IPSANRSGQISITNVKHILSS--SICKEIPLIIDG-GISKIGLESTIVNVQCEKKVRILR 193 SAN SGQ + + I+++ S+ P GI G ST+ QC+ ILR Sbjct: 131 TTSANLSGQEPLLTPEAIMTTFPSVTVLAPTERQAWGIINSGQPSTVARWQCQGW-DILR 189 Query: 194 PGGL 197 G + Sbjct: 190 QGAV 193 >gi|238921140|ref|YP_002934655.1| [NiFe] hydrogenase maturation protein HypF, [Edwardsiella ictaluri 93-146] gi|238870709|gb|ACR70420.1| [NiFe] hydrogenase maturation protein HypF, putative [Edwardsiella ictaluri 93-146] Length = 774 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 59/130 (45%), Gaps = 8/130 (6%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 LDAG +A+ + LA D+ N AI RL E K+RP PL + D+S + ++ P Sbjct: 210 LDAGHIVAVKGLGGFHLACDAENDAAIARLRERKRRPG-KPLALMLPDLSWLARYCRAAP 268 Query: 79 LSLHLAKLFWP-GPLTLVLDLLSTTDIHPLSTA-NLKTACFRVPCGFTKKLIETY-GHPL 135 + A L P P+ LV +D P A L +P L+ + G PL Sbjct: 269 DAGLQALLSSPAAPIVLV----PASDAVPAQVAPGLDEVGVMLPGTPLHHLLMAHIGRPL 324 Query: 136 AIPSANRSGQ 145 + S N SGQ Sbjct: 325 VMTSGNASGQ 334 >gi|261381413|ref|ZP_05985986.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria subflava NJ9703] gi|284795602|gb|EFC50949.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria subflava NJ9703] Length = 206 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 49/197 (24%), Positives = 81/197 (41%), Gaps = 21/197 (10%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A + + +G I PT++ Y L + A+ R+ I+K + L +D+S + Sbjct: 17 IKQAADIVRSGGVIVYPTDSCYALGCKLGDKNAMERILTIRKIDQKHHLTLMCADLSELG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDL---LSTTDIHPLSTANLKTACFRVPCGFTK-KL 127 +A VD K PG T +L + +HP KT RVP T L Sbjct: 77 TYAKVDNAQFRQLKAATPGSYTFILQATKEVPNRTLHP----KRKTIGLRVPDNATALAL 132 Query: 128 IETYGHP-----LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 ++ G P L +P +T+ I + + L+IDGG G E T V Sbjct: 133 LQELGEPILSCTLMLPEDEE----PLTDPYEI-RDRLEHAVDLVIDGGWC--GTEPTTV- 184 Query: 183 VQCEKKVRILRPGGLEI 199 + ++R G +I Sbjct: 185 IDMTDGTELIRQGKGDI 201 >gi|15829084|ref|NP_326444.1| hypothetical protein MYPU_6130 [Mycoplasma pulmonis UAB CTIP] gi|14090028|emb|CAC13786.1| conserved hypothetical protein [Mycoplasma pulmonis] Length = 154 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 64/151 (42%), Gaps = 29/151 (19%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 + T+T+ GL + + ++YEIKKRP +I V ++ + + + + A Sbjct: 9 LVFTTDTLIGLG-GKVSDVILEKIYEIKKRPIDKKMIILVGSLAQAQSFSQWNLKANKQA 67 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-----CGFTKKLIETYGHPLAIPS 139 + +WPG TL+++ FR+P C F LIE PL S Sbjct: 68 QKYWPGATTLIVN----------------DQGFRMPKNKALCKF---LIEQ--GPLYTTS 106 Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGG 170 AN SG +I + + I +I ID G Sbjct: 107 ANLSGFENIKTLDE--AKKIFPQIKHFIDFG 135 >gi|313200705|ref|YP_004039363.1| sua5/ycio/yrdc/ywlc family protein [Methylovorus sp. MP688] gi|312440021|gb|ADQ84127.1| Sua5/YciO/YrdC/YwlC family protein [Methylovorus sp. MP688] Length = 209 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 68/161 (42%), Gaps = 8/161 (4%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIK--KRPAMNPLICHVSDISMVK 71 +A E L G +A PT++ Y L N A R+ I+ + L+C ++S + Sbjct: 19 QAVEILRNGGVVAYPTDSSYALGCVVGNKDAQDRIRAIRGVDDDHLFTLVCR--NLSELA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129 +A VD L K PG T +L +T ++ L T RVP T+ L+E Sbjct: 77 VYAQVDNSQFRLLKANTPGQYTFILK--ATREVPRRLQHPKRSTLGLRVPDHAVTQALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 PL S G+ + N + + ++ L+ID G Sbjct: 135 ALDEPLLSMSLQLPGEEDVLNEAWEIRDRLEHQLGLVIDAG 175 >gi|320540532|ref|ZP_08040182.1| conserved protein [Serratia symbiotica str. Tucson] gi|320029463|gb|EFW11492.1| conserved protein [Serratia symbiotica str. Tucson] Length = 207 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 42/172 (24%), Positives = 74/172 (43%), Gaps = 6/172 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + L G I PT++ Y L + TA+ R+ I++ + + D+S + Sbjct: 17 INQTMDVLRKGGVIVYPTDSGYALGCMLEDKTAMARICHIRQLGSNHNFTLMCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD ++ HL K PG T +L +T ++ L KT RVP L+ Sbjct: 77 SYAYVDNIAYHLIKNNTPGNYTFILK--ATKEVPRRLMNDKRKTIGLRVPSNPIALALLA 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 P+ + G + +S + K++ L+I GG +G + T V Sbjct: 135 ALNEPMMSTTLMLPGNDFAESDPQEISDHLGKQVDLVIHGGF--LGQQPTTV 184 >gi|254415268|ref|ZP_05029030.1| hypothetical protein MC7420_2694 [Microcoleus chthonoplastes PCC 7420] gi|196178074|gb|EDX73076.1| hypothetical protein MC7420_2694 [Microcoleus chthonoplastes PCC 7420] Length = 205 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 62/132 (46%), Gaps = 12/132 (9%) Query: 20 DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH----VSDISMVKKHAS 75 ++G ++ PT+T+ LAV P ++ +K+R PLI S S VK + Sbjct: 14 NSGQIVSFPTDTIPALAV---RPDYAELIFTLKQRSNNKPLILMGSFPSSLWSYVKGTDA 70 Query: 76 VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVPCGFTKKLIETYGH 133 + +AK +WPG LTLV L +D P ++ + T RVP I + Sbjct: 71 ELEIWQQVAKHYWPGALTLV---LPASDKVPAAMNPTDPTTIGLRVPDSRVAIAILSQTG 127 Query: 134 PLAIPSANRSGQ 145 PLA SAN SG+ Sbjct: 128 PLATTSANVSGK 139 >gi|119475272|ref|ZP_01615625.1| Sua5/YciO/YrdC family protein [marine gamma proteobacterium HTCC2143] gi|119451475|gb|EAW32708.1| Sua5/YciO/YrdC family protein [marine gamma proteobacterium HTCC2143] Length = 184 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 10/138 (7%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 ++A L G IA PTE+V+G D N A+ +L +K+RP LI + + Sbjct: 6 QRAARQLLVGNIIAYPTESVWGFGCDPDNQEAVAKLLSLKQRPVSKGLILVAASAEQFSR 65 Query: 73 HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS--TANLKTACFRVPCGFTKKLIE- 129 + ++ LS L + F P + L + H +S T + + RV K +++ Sbjct: 66 Y--LEGLSPSLQEKF-RRPTAVPTTWLVPANKHAMSWITGDYDSIALRVST--YKPVVDL 120 Query: 130 --TYGHPLAIPSANRSGQ 145 +G PL SAN +G+ Sbjct: 121 CVAFGTPLVSTSANTAGK 138 >gi|22299666|ref|NP_682913.1| hypothetical protein tll2123 [Thermosynechococcus elongatus BP-1] gi|22295850|dbj|BAC09675.1| tll2123 [Thermosynechococcus elongatus BP-1] Length = 197 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 53/185 (28%), Positives = 77/185 (41%), Gaps = 21/185 (11%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD----ISMVKKHASVDPLS 80 I+ PT+TV LA I Y K+R PLI ++ V+ A+ Sbjct: 23 ISFPTDTVPALASRCDRGELI---YTAKERQPDKPLILMGANPEQLWPFVRGSAAEWEQW 79 Query: 81 LHLAKLFWPGPLTLVLDLLS-TTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPS 139 +A +WPG +TLVL ++PL T T RVP + + PLA S Sbjct: 80 SAMAARYWPGAVTLVLPAAELPPGLNPLGTG---TIGLRVPDWPPAQALLQQTGPLATTS 136 Query: 140 ANRSGQISITNVKHILSSSICKEIPLIID----GGISKIGLESTIVNVQCEKKVRILRPG 195 NRSGQ + + +I +E P ++ ST+V Q + ILR G Sbjct: 137 INRSGQPPLIEL-----GAIAREFPQVLTLHPWQLPPSPPQPSTVVQWQS-GQWHILRQG 190 Query: 196 GLEIE 200 ++IE Sbjct: 191 RVQIE 195 >gi|15595220|ref|NP_248712.1| hypothetical protein PA0022 [Pseudomonas aeruginosa PAO1] gi|107099015|ref|ZP_01362933.1| hypothetical protein PaerPA_01000023 [Pseudomonas aeruginosa PACS2] gi|116053742|ref|YP_788177.1| hypothetical protein PA14_00240 [Pseudomonas aeruginosa UCBPP-PA14] gi|218888768|ref|YP_002437632.1| putative translation factor [Pseudomonas aeruginosa LESB58] gi|254237736|ref|ZP_04931059.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|254243134|ref|ZP_04936456.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|296386495|ref|ZP_06875994.1| putative translation factor [Pseudomonas aeruginosa PAb1] gi|313111455|ref|ZP_07797257.1| putative translation factor [Pseudomonas aeruginosa 39016] gi|81542151|sp|Q9I7A5|RIMN_PSEAE RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|122262123|sp|Q02V59|RIMN_PSEAB RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|9945841|gb|AAG03412.1|AE004441_13 conserved hypothetical protein [Pseudomonas aeruginosa PAO1] gi|115588963|gb|ABJ14978.1| putative translation factor [Pseudomonas aeruginosa UCBPP-PA14] gi|126169667|gb|EAZ55178.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|126196512|gb|EAZ60575.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|218768991|emb|CAW24749.1| putative translation factor [Pseudomonas aeruginosa LESB58] gi|310883759|gb|EFQ42353.1| putative translation factor [Pseudomonas aeruginosa 39016] Length = 185 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 40/136 (29%), Positives = 55/136 (40%), Gaps = 13/136 (9%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A + G IA PTE V+GL D N A+ RL +K RP LI ++I + Sbjct: 10 AARVVREGGVIAYPTEAVWGLGCDPWNEDAVYRLLALKARPVEKGLIVVAANIHQLDFLL 69 Query: 75 SVDPLSLHLAKL--FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP--------CGFT 124 P + L +L WPGP T ++ + T + RV C T Sbjct: 70 EDLP-DVWLDRLAGTWPGPNTWLVP--HQERLPEWVTGVHDSVAVRVTDHPLVQELCHLT 126 Query: 125 KKLIETYGHPLAIPSA 140 LI T +P P+A Sbjct: 127 GPLISTSANPAGRPAA 142 >gi|198283581|ref|YP_002219902.1| Sua5/YciO/YrdC/YwlC family protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665262|ref|YP_002426205.1| Sua5/YciO/YrdC/YwlC family protein [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248102|gb|ACH83695.1| Sua5/YciO/YrdC/YwlC family protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517475|gb|ACK78061.1| Sua5/YciO/YrdC/YwlC family protein [Acidithiobacillus ferrooxidans ATCC 23270] Length = 211 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 44/186 (23%), Positives = 80/186 (43%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +A E L G + PT+T Y L + RL I++ + L S IS + Sbjct: 17 LAQAAEVLRGGGLLVYPTDTCYALGCTVAARESQERLRRIRQLDLQHDLSLLFSSISQLT 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A +D + L + PGP T +L +T D+ L+ ++ R+P + LI Sbjct: 77 DYAQLDDRAYALLRRILPGPYTFILP--ATRDVPRRLADPKKRSIGVRIPASPLCEGLIA 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL + G + + ++ ++ +++ G + ST+V++ + Sbjct: 135 ELGEPLMSSTLQLPGATAPLTDPDEICKTMGNQVDMVLLSGPGGVRC-STVVDL-LQWPP 192 Query: 190 RILRPG 195 R+LR G Sbjct: 193 RLLREG 198 >gi|317054482|ref|YP_004118507.1| (NiFe) hydrogenase maturation protein HypF [Pantoea sp. At-9b] gi|316952477|gb|ADU71951.1| (NiFe) hydrogenase maturation protein HypF [Pantoea sp. At-9b] Length = 757 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 32/52 (61%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56 S+T AL++A L G +A+ + LAVD+RNP A+ RL + K+RP+ Sbjct: 203 SVTGEAALQQAVAVLKNGGIVAVKGLGGFHLAVDARNPAAVERLRQRKRRPS 254 >gi|71066688|ref|YP_265415.1| hypothetical protein Psyc_2134 [Psychrobacter arcticus 273-4] gi|123647618|sp|Q4FPS7|RIMN_PSYA2 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|71039673|gb|AAZ19981.1| conserved hypothetical protein [Psychrobacter arcticus 273-4] Length = 214 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 2/56 (3%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 ITDS + +A +L G +A PTE+V+G+ D N A+ +L IK+RP +I Sbjct: 8 ITDS--VIQAAHWLKKGQLLAYPTESVWGIGCDPFNQQAVMQLLTIKQRPIEKGMI 61 >gi|167765241|ref|ZP_02437354.1| hypothetical protein BACSTE_03629 [Bacteroides stercoris ATCC 43183] gi|167696869|gb|EDS13448.1| hypothetical protein BACSTE_03629 [Bacteroides stercoris ATCC 43183] Length = 204 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 1/87 (1%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSDISMV 70 L++ + L+ G I PT+T+Y + AI R+ ++K P N L D+S + Sbjct: 15 LQQVIDILNDGGIIIYPTDTMYAIGCHGLKERAIERICQLKNTDPKKNNLSIICYDLSSI 74 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLD 97 ++A D + L K PG T +L+ Sbjct: 75 SEYAKFDNNTFKLMKRNLPGAFTFILN 101 >gi|301155130|emb|CBW14594.1| predicted ribosome maturation factor [Haemophilus parainfluenzae T3T1] Length = 183 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 8/125 (6%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83 +A PTE V+GL + + +A+R+L ++K+RP LI + ++ LS L Sbjct: 16 VAYPTEAVFGLGCNPLSESAVRKLLDLKQRPIEKGLILVAPSLHFLQPFVDFSRLSNEQL 75 Query: 84 AKL--FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF--TKKLIETYGHPLAIPS 139 A+L + P+T V+ + ++ T + R+ C K L ET G L S Sbjct: 76 ARLQAQYEHPITWVVP--AKAEVPHFLTGQFDSIAVRL-CTHPAVKALCETTGFALTSTS 132 Query: 140 ANRSG 144 AN +G Sbjct: 133 ANLTG 137 >gi|261867922|ref|YP_003255844.1| SUA5 protein [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413254|gb|ACX82625.1| SUA5 protein [Aggregatibacter actinomycetemcomitans D11S-1] Length = 207 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 52/194 (26%), Positives = 88/194 (45%), Gaps = 21/194 (10%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E L G I PT++ Y L + A+ R+ I++ P + SD+S + Sbjct: 17 INQAVEILRNGGVIVYPTDSGYALGCMIGDKHAMDRIVHIRQLPEGHNFTLVCSDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 ++ V + L K PG T +L +T ++ L T+ KT RVP L++ Sbjct: 77 TYSLVTNSAYRLIKNNTPGRYTFILT--ATKELPRRLMTSKRKTIGIRVPDNQIALDLLK 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSS-------ICKEIPLIIDGGISKIGLE-STIV 181 G P+ S + + N +H+ S + ++ LII GG +G E +T+V Sbjct: 135 ALGEPIL------SCSLMLPNEEHLTQSDPEEIRDRLEHQVDLIIHGGY--LGQEPTTVV 186 Query: 182 NVQCEKKVRILRPG 195 ++ + V ILR G Sbjct: 187 DLTGDTPV-ILREG 199 >gi|282897709|ref|ZP_06305708.1| SUA5/yciO/yrdC-like protein [Raphidiopsis brookii D9] gi|281197388|gb|EFA72285.1| SUA5/yciO/yrdC-like protein [Raphidiopsis brookii D9] Length = 190 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 55/203 (27%), Positives = 85/203 (41%), Gaps = 25/203 (12%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 M+I+ +R A E G I+ PT+TV G+A PT +Y K+R PLI Sbjct: 1 MNISLDRLVRGAKE----GKIISFPTDTVPGMAT---IPTKAELIYVAKQRSLDKPLILM 53 Query: 64 VSD----ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACF 117 ++ VK + + +WPG LTLV L +D P ++ + T Sbjct: 54 GAEPESLWEYVKGSDQEYEIWQEVVNRYWPGALTLV---LPASDKVPRVMNPQDPTTIGI 110 Query: 118 RVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI---SKI 174 RVP + I P+A S N SG+ + + I E P ++ + + Sbjct: 111 RVPNHPIARAILAQTGPMATTSVNLSGKPPLET-----QAEIAVEFPDVLTEELIEYKGL 165 Query: 175 GLESTIVNVQCEKKVRILRPGGL 197 G+ ST+ E +ILR G + Sbjct: 166 GVPSTVAK-WTENHWQILRQGSI 187 >gi|254282932|ref|ZP_04957900.1| Sua5/YciO/YrdC/YwlC family protein [gamma proteobacterium NOR51-B] gi|219679135|gb|EED35484.1| Sua5/YciO/YrdC/YwlC family protein [gamma proteobacterium NOR51-B] Length = 208 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 44/180 (24%), Positives = 78/180 (43%), Gaps = 15/180 (8%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 +A ++ G I PT++ Y L N +A+ R+ I++ + D+S + + Sbjct: 19 QAVTIVNKGGVIVYPTDSAYALGCLLGNKSALERIRRIRQLDDSHNFTLVCRDLSELGNY 78 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKKLIETY 131 A VD + L + PGP T +L+ +T ++ L KT RVP + L+ Sbjct: 79 ARVDNTAYRLIRAHTPGPFTFILE--ATREVPKRLQHPKRKTIGLRVPDNAIAQALLAEL 136 Query: 132 GHPLA----IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST-IVNVQCE 186 P+ I + +++ IL + +IDGG GLE T +V++ C+ Sbjct: 137 DAPMMSVTLIMPDDEYPLTDPYDIRDILE----HHVDAVIDGGYC--GLEPTSVVDMTCD 190 >gi|171059265|ref|YP_001791614.1| Sua5/YciO/YrdC/YwlC family protein [Leptothrix cholodnii SP-6] gi|170776710|gb|ACB34849.1| Sua5/YciO/YrdC/YwlC family protein [Leptothrix cholodnii SP-6] Length = 208 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 10/148 (6%) Query: 28 PTETVYGLAV---DSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 PT++ Y L D A+RR+ + + + L+C D+S + +A VD L Sbjct: 33 PTDSSYALVCQLDDKAAADALRRIRGVDDKHHLT-LLCR--DLSELSSYARVDNRQYRLL 89 Query: 85 KLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142 K PGP T +L+ +T ++ LS + +T RVP T+ L++ +G PL + Sbjct: 90 KSATPGPYTFILE--ATKEVPRRLSHPSRRTIGLRVPDHRVTQDLLDLFGQPLLGTTLIP 147 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGG 170 G+I N + + + +I+D G Sbjct: 148 PGEIHPLNDCAEIRERFERLVQVIVDAG 175 >gi|317492214|ref|ZP_07950643.1| Sua5/YciO/YrdC/YwlC family protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919553|gb|EFV40883.1| Sua5/YciO/YrdC/YwlC family protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 206 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 46/189 (24%), Positives = 76/189 (40%), Gaps = 6/189 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S + + E L G I PT++ Y L A+ R+ I+ + + D+S Sbjct: 14 SRLISQCVEVLRKGGVIVYPTDSGYALGCMLGEKNAMERICRIRNLDSNHNFTLVCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKK 126 + +A VD + L K PG T +L +T ++ L + KT RVP Sbjct: 74 EISTYAFVDNTAFRLIKNNTPGHYTFILK--ATKEVPRRLMSEKRKTIGLRVPSNPIALD 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+ G PL + G + + ++ K + L+I GG +G + T V E Sbjct: 132 LLAALGEPLMSTTLMLPGNDFAESDPEEIQDALGKVVDLVIHGGF--LGQQPTTVIDLTE 189 Query: 187 KKVRILRPG 195 ++R G Sbjct: 190 DSPEVVRVG 198 >gi|260776102|ref|ZP_05884997.1| YrdC family protein [Vibrio coralliilyticus ATCC BAA-450] gi|260607325|gb|EEX33590.1| YrdC family protein [Vibrio coralliilyticus ATCC BAA-450] Length = 206 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 4/126 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + G + PT++ Y L N A+ R+ +I++ + D+S + Sbjct: 17 INQAVAIIRNGGVVIYPTDSGYALGCQLENKQALERICKIRRLDEKHNFTLLCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD + L K PGP T + T ++ L + KT RVP L+E Sbjct: 77 LYARVDNTAFRLLKNNTPGPYTFIFK--GTKEVPRRLMNSKRKTIGIRVPDNQIALDLLE 134 Query: 130 TYGHPL 135 G PL Sbjct: 135 ALGEPL 140 >gi|238020912|ref|ZP_04601338.1| hypothetical protein GCWU000324_00809 [Kingella oralis ATCC 51147] gi|237867892|gb|EEP68898.1| hypothetical protein GCWU000324_00809 [Kingella oralis ATCC 51147] Length = 206 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 49/193 (25%), Positives = 80/193 (41%), Gaps = 21/193 (10%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E + G I PT++ Y + + TA+ R+ I+K + L +D+S + Sbjct: 17 IKQAVEIVRKGGVIVYPTDSCYAIGCALGDKTAMERILAIRKIDLKHHLTLMCADLSDLG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDL---LSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 +A VD K PG T +L + +HP KT RVP L Sbjct: 77 TYAKVDNSQFRQLKAATPGSYTFILQATKEVPNRTLHP----KRKTIGLRVPDNAIALAL 132 Query: 128 IETYGHP-----LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 ++ G P L +P + +T+ I + + L+IDGG G E T V Sbjct: 133 LKELGEPMLSSTLMLPEDDE----PLTDPYEI-RDRLEHAVDLVIDGGWC--GTEPTTV- 184 Query: 183 VQCEKKVRILRPG 195 + V ++R G Sbjct: 185 IDMTDGVELVRQG 197 >gi|330956061|gb|EGH56321.1| SUA5/yciO/yrdC [Pseudomonas syringae Cit 7] Length = 82 Score = 41.2 bits (95), Expect = 0.22, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 31/56 (55%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 +++A + + AG IA PTE V+GL D + A+ RL IK RP LI +I Sbjct: 7 VQQAAQDIRAGAVIAYPTEAVWGLGCDPWDEEAVYRLLAIKSRPVEKGLILIADNI 62 >gi|330955918|gb|EGH56178.1| SUA5/yciO/yrdC [Pseudomonas syringae Cit 7] Length = 77 Score = 41.2 bits (95), Expect = 0.22, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 31/56 (55%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 +++A + + AG IA PTE V+GL D + A+ RL IK RP LI +I Sbjct: 7 VQQAAQDIRAGAVIAYPTEAVWGLGCDPWDEEAVYRLLAIKSRPVEKGLILIADNI 62 >gi|325576777|ref|ZP_08147392.1| Sua5/YciO/YrdC/YwlC family protein [Haemophilus parainfluenzae ATCC 33392] gi|325160983|gb|EGC73101.1| Sua5/YciO/YrdC/YwlC family protein [Haemophilus parainfluenzae ATCC 33392] Length = 183 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 65/140 (46%), Gaps = 12/140 (8%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK-----HASVDPL 79 +A PTE V+GL + + +A+R+L ++K+RP LI ++ +++ H S + L Sbjct: 16 VAYPTEAVFGLGCNPLSESAVRKLLDLKQRPIEKGLILVAPNLHFLQQFIDFSHLSDEQL 75 Query: 80 SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF--TKKLIETYGHPLAI 137 S A+ + P+T V+ + ++ T + R+ C K L E G L Sbjct: 76 SRLQAQ--YDHPITWVVP--AKAEVPHFLTGQFNSIAVRL-CTHPAVKALCEKTGFALTS 130 Query: 138 PSANRSGQISITNVKHILSS 157 SAN +G+ N + S Sbjct: 131 TSANLTGKSPCRNADAVRSQ 150 >gi|254373899|ref|ZP_04989381.1| hypothetical protein FTDG_00053 [Francisella novicida GA99-3548] gi|151571619|gb|EDN37273.1| hypothetical protein FTDG_00053 [Francisella novicida GA99-3548] Length = 204 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 51/192 (26%), Positives = 86/192 (44%), Gaps = 8/192 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++ LD IAIPT++ Y LA ++ I ++ +I+ + + D+S + Sbjct: 17 LKELANILDNDGVIAIPTDSGYALACRMKSKKGIDKIIKIRNLDSSHNFTLCCKDLSEIS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCGFTKKLIET 130 ++A VD + L K + PG T +L+ +T + L T + T RV + + I Sbjct: 77 EYAKVDNNAYRLLKRYTPGSYTFILN--ATKKVSSLLVTKSKNTVGIRVSEHYVPRAISA 134 Query: 131 -YGHPLAIPSANRSG-QISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 G PL I S G Q +T+ + S I + +++ G + T V E Sbjct: 135 EIGEPLVISSFIVPGHQYVVTDCAEV-DSQIMNYLDAVVES--DYCGYDPTTVVELLELP 191 Query: 189 VRILRPGGLEIE 200 +ILR G EI+ Sbjct: 192 YQILRQGAGEID 203 >gi|330445591|ref|ZP_08309243.1| yrdC domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489782|dbj|GAA03740.1| yrdC domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 206 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 43/190 (22%), Positives = 81/190 (42%), Gaps = 6/190 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E + G + PT++ Y L N A+ R+ +I++ + D+S + Sbjct: 17 IKQAVEIIKNGGVVVYPTDSGYALGCQLENKAALERICQIRRLNEKHNFTLLCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 + VD ++ L + PG T + T ++ L A KT RVP L+E Sbjct: 77 LYTRVDNVAFRLLRNNTPGAYTFIFK--GTKEVPRRLMNAKRKTIGIRVPDNAIALALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL S G + + + + + LI+ GG +G + T V + ++ Sbjct: 135 ALGEPLMSTSLILPGNDTTESDPDEIRDKLEHAVDLIMHGGY--LGEQPTTVIDFSDGEI 192 Query: 190 RILRPGGLEI 199 ++R G ++ Sbjct: 193 EVVRVGAGDV 202 >gi|260905265|ref|ZP_05913587.1| translation factor SUA5 [Brevibacterium linens BL2] Length = 206 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 39/167 (23%), Positives = 70/167 (41%), Gaps = 14/167 (8%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + KA + L G IA PT++ Y L N I R+ I++ + + D + + Sbjct: 17 IEKAVQTLRDGGLIAYPTDSGYALGCALDNKAGIERITRIRQLDSKHHFTLMCRDFAQLG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCGFTK-KLIE 129 + VD + K PGP T ++ +T ++ + A + R+P T L+E Sbjct: 77 QFVIVDNSDFRVIKSMTPGPYTFIMK--ATKEVPRRMMHAKKHSVGARIPQNVTALALVE 134 Query: 130 TYGHP-----LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171 G P L +P A + +T ++ I E+ +I+ G+ Sbjct: 135 AMGEPILSSTLLLPGA----EDPLTQADEVV-EQIGHELDAVIESGV 176 >gi|146312826|ref|YP_001177900.1| (NiFe) hydrogenase maturation protein HypF [Enterobacter sp. 638] gi|145319702|gb|ABP61849.1| (NiFe) hydrogenase maturation protein HypF [Enterobacter sp. 638] Length = 751 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 1/63 (1%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + NAL+ A + L AG +AI + + L D+RN AI RL E K RPA PL V+ Sbjct: 194 FSHENALQVAVKLLKAGGVVAIKSLGGFHLVCDARNIQAISRLRERKHRPA-KPLAVMVA 252 Query: 66 DIS 68 D++ Sbjct: 253 DVA 255 >gi|294649549|ref|ZP_06726969.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter haemolyticus ATCC 19194] gi|292824536|gb|EFF83319.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter haemolyticus ATCC 19194] Length = 205 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 45/188 (23%), Positives = 77/188 (40%), Gaps = 10/188 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + + AG + PT+ Y + N +A+ R+ +I+ + D+S + Sbjct: 16 ITQAVDRIRAGDVVVYPTDAAYAIGCQIGNKSAMERIAQIRGLGPKHQYAIMCCDLSDIA 75 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127 +A VD L K P T +L S +HP KT R+P + L Sbjct: 76 TYAKVDNAMYRLLKNNTPAVTTFILPATSEVPKRLMHP----KKKTIGLRIPSNPVAQAL 131 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ G PL + Q + + + S + K I + ID G + S IV++ E Sbjct: 132 LKELGEPLLTSTLILPDQKDPLDDPYDIESQLGKRIDVFIDSGFGTLSTTS-IVDLSGEN 190 Query: 188 KVRILRPG 195 I+R G Sbjct: 191 P-EIIRRG 197 >gi|145349506|ref|XP_001419173.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144579404|gb|ABO97466.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 244 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 31/93 (33%), Positives = 42/93 (45%), Gaps = 8/93 (8%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL--ICH-VSDIS 68 L + E + G AIPT+T Y D N A+++LY+IK PL +C +DI Sbjct: 19 LDQVAEAIRRGEVGAIPTDTKYAFVADLTNADAVQKLYDIKDAGLNKPLSILCRGFADID 78 Query: 69 MVKKHASVDP-----LSLHLAKLFWPGPLTLVL 96 +P L LAK PGP T +L Sbjct: 79 AYTTGFPNNPKPGATLPFKLAKQCLPGPYTFIL 111 >gi|119944820|ref|YP_942500.1| Sua5/YciO/YrdC/YwlC family protein [Psychromonas ingrahamii 37] gi|119863424|gb|ABM02901.1| translation factor SUA5 [Psychromonas ingrahamii 37] Length = 206 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 49/194 (25%), Positives = 79/194 (40%), Gaps = 14/194 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E L G I PT++ Y L N + ++ +I+ + D+S + Sbjct: 17 IKQAVEILKKGGVIIYPTDSGYALGCTMDNKHGLDKICQIRDLNKKHNFTLVCRDLSEIA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCGFTK-KLIE 129 +A VD + K PG T + ST D+ L +T R+P L+ Sbjct: 77 TYARVDNHAFRALKNNTPGAYTFIFK--STKDLPKRLMNPTKRTIGIRIPNNVIALALLA 134 Query: 130 TYGHPLAIPS----ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 G PL S N S + ++K LS+ ++ LI+ GG +G T V Sbjct: 135 ELGEPLMTTSLILPGNTSTEFDPEDIKDKLSN----QVDLIMTGGY--LGESPTTVIDFS 188 Query: 186 EKKVRILRPGGLEI 199 + V I R G +I Sbjct: 189 DDDVVITRIGAGDI 202 >gi|194367364|ref|YP_002029974.1| SUA5/yciO/yrdC domain [Stenotrophomonas maltophilia R551-3] gi|194350168|gb|ACF53291.1| SUA5/yciO/yrdC domain [Stenotrophomonas maltophilia R551-3] Length = 196 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 58/138 (42%), Gaps = 6/138 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L A L AG IA PTE V+GL D + A+ + +K+RP +I ++++ ++ Sbjct: 16 LDSAVASLRAGGVIAYPTEAVWGLGCDPSHEAAVHMVLRLKQRPIEKGMILVAAELAQLE 75 Query: 72 KHASVD--PLSLHLAKLF-WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + P + A L WPG T +L + T R+ L Sbjct: 76 GWVRLQALPDARQRAVLASWPGANTWILPAGPRAQL--WITGEHSGIAVRISAHPLVAAL 133 Query: 128 IETYGHPLAIPSANRSGQ 145 +G PL SAN +G+ Sbjct: 134 CRAWGGPLVSTSANLAGE 151 >gi|194337081|ref|YP_002018875.1| (NiFe) hydrogenase maturation protein HypF [Pelodictyon phaeoclathratiforme BU-1] gi|194309558|gb|ACF44258.1| (NiFe) hydrogenase maturation protein HypF [Pelodictyon phaeoclathratiforme BU-1] Length = 849 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A FL G+ +A+ + LAVD+RN A+RRL E K R A P + D S Sbjct: 247 GDVVAEAVAFLRRGMIVALKGLGGFHLAVDARNEAAVRRLRERKGREA-KPFAVMIRDRS 305 Query: 69 MVKKHASV 76 +V + V Sbjct: 306 LVHGYCEV 313 >gi|149907888|ref|ZP_01896556.1| Sua5/YciO/YrdC/YwlC family protein [Moritella sp. PE36] gi|149808894|gb|EDM68825.1| Sua5/YciO/YrdC/YwlC family protein [Moritella sp. PE36] Length = 206 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 45/186 (24%), Positives = 74/186 (39%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A L G I PT++ Y L + A+ R+ +I+K + D+S + Sbjct: 17 ISQAVAILRDGGVIIYPTDSGYALGCHLGDKNALERICKIRKLDKDHNFTLLCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A V+ + K PGP T + T ++ L KT RVP ++E Sbjct: 77 LYARVENQAYRALKNNTPGPFTFIFK--GTKEVPRRLMNPKRKTIGIRVPDNTIALAILE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G P+ S G + + ++ LII+GG +G + T V E Sbjct: 135 ALGEPMMSTSLILPGNEGAEFDPEAIRDQLENQVELIINGGY--LGEQVTTVVDYSEGDA 192 Query: 190 RILRPG 195 I+R G Sbjct: 193 VIVRQG 198 >gi|50083490|ref|YP_045000.1| putative Sua5/YciO/YrdC/YwlC family protein [Acinetobacter sp. ADP1] gi|81393947|sp|Q6FFH9|RIMN_ACIAD RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|49529466|emb|CAG67178.1| putative ribosome maturation factor (dsRNA-binding protein) (RimN) [Acinetobacter sp. ADP1] Length = 192 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 33/63 (52%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ +A L G +A PTE V+GL D N A R++ +K+RP +I D+ Sbjct: 5 TTSVAEAAHCLKQGQVLAYPTEAVWGLGCDPFNELAFRQILALKQRPIEKGVILLAGDVG 64 Query: 69 MVK 71 ++ Sbjct: 65 QIE 67 >gi|262375678|ref|ZP_06068910.1| yrdC domain-containing protein [Acinetobacter lwoffii SH145] gi|262309281|gb|EEY90412.1| yrdC domain-containing protein [Acinetobacter lwoffii SH145] Length = 205 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 43/179 (24%), Positives = 74/179 (41%), Gaps = 20/179 (11%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP------LICHVS 65 + +A E + AG + PT+ Y + N +A+ R+ +I+ + P L C +S Sbjct: 16 ISQAVERIRAGDVVVYPTDAAYAIGCQIGNKSAMERIAQIR---GLGPKHQYAILCCDLS 72 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG 122 DI+ +A VD L K P T +L S +HP KT R+P Sbjct: 73 DIA---TYAKVDNAMYRLLKNNTPAITTFILPATSEVPRRLMHP----KKKTIGLRIPNN 125 Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 + L++ G PL + GQ + + + + K I + +D G+ + S + Sbjct: 126 PVCQMLLKELGEPLLTSTLILPGQTDPLDDPYDIEMQLGKRIDVFVDSGLGTLSTTSIV 184 >gi|284053293|ref|ZP_06383503.1| Sua5/YciO/YrdC/YwlC family protein [Arthrospira platensis str. Paraca] Length = 275 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 48/191 (25%), Positives = 82/191 (42%), Gaps = 13/191 (6%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L G + PT+TVY + D +A++++ +IK+ PL S +S + +A V Sbjct: 77 LKRGAVMLYPTDTVYAIGCDLTVKSAVQKVRQIKQISNDKPLTFLCSSLSNIADYAIVTD 136 Query: 79 LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA-NLKTACFRVPCG-FTKKLIETYGHPLA 136 + K PG T VL +T + L + KT RVP ++E+ G+P+ Sbjct: 137 EAYRTIKKLIPGSYTFVLP--ATKQVPKLVMSPKRKTTGIRVPDHPVCLAILESLGNPVI 194 Query: 137 IPSANRSGQ---------ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 SA+ + I K L ++ + +I+D G STI+++ + Sbjct: 195 STSAHIKEEDEPSALIRKIPQNYDKFQLFDALENLVDIIVDDGADLDYQVSTIIDLSADD 254 Query: 188 KVRILRPGGLE 198 V + R G E Sbjct: 255 PVLVRRGKGWE 265 >gi|308807076|ref|XP_003080849.1| translation factor-like (ISS) [Ostreococcus tauri] gi|116059310|emb|CAL55017.1| translation factor-like (ISS) [Ostreococcus tauri] Length = 308 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 8/79 (10%) Query: 26 AIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL--ICH-VSDISMV-----KKHASVD 77 AIPT+T Y D N +A+++LY+IK PL +C +DI K + Sbjct: 98 AIPTDTKYAFVADMSNASAVQKLYDIKGCGYNKPLSILCRGFADIDAYTTGFPKNVKPGE 157 Query: 78 PLSLHLAKLFWPGPLTLVL 96 L LAK PGP T +L Sbjct: 158 TLPFKLAKKCLPGPYTFIL 176 >gi|269102963|ref|ZP_06155660.1| YrdC family protein [Photobacterium damselae subsp. damselae CIP 102761] gi|268162861|gb|EEZ41357.1| YrdC family protein [Photobacterium damselae subsp. damselae CIP 102761] Length = 221 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 44/186 (23%), Positives = 73/186 (39%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E + G I PT++ Y L N +A+ R+ +I++ + D+S + Sbjct: 31 INQAVEIIRNGGVIVYPTDSGYALGCQLENKSALERICQIRRLNDKHNFTLLCRDLSEIS 90 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD + L + PG T + T D+ L KT RVP L+ Sbjct: 91 LYARVDNAAFRLLRNNTPGAYTFIFK--GTKDVPRRLMNPKRKTIGIRVPDNQIALDLLA 148 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G P+ S + + + + LII GG +G + T V + Sbjct: 149 ALGEPMMSTSLILPNHEMTESDPDEIRDKLEHAVDLIIHGGY--LGEQPTTVIDFSNDDI 206 Query: 190 RILRPG 195 I+R G Sbjct: 207 EIVRVG 212 >gi|33151637|ref|NP_872990.1| hypothetical protein HD0414 [Haemophilus ducreyi 35000HP] gi|81423817|sp|Q7VNS3|RIMN_HAEDU RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|33147858|gb|AAP95379.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP] Length = 184 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 28/52 (53%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 N L E L +A PTE+V+GL + N AIR+L ++K RP LI Sbjct: 2 NNLLAVIELLKQNQVVAYPTESVFGLGCNPNNEEAIRQLLQLKNRPIEKGLI 53 >gi|89074055|ref|ZP_01160556.1| putative translation factor [Photobacterium sp. SKA34] gi|89050193|gb|EAR55704.1| putative translation factor [Photobacterium sp. SKA34] Length = 206 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 44/190 (23%), Positives = 80/190 (42%), Gaps = 6/190 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E + G + PT++ Y L N A+ R+ +I++ + D+S + Sbjct: 17 IKQAVEIIKNGGVVVYPTDSGYALGCQLENKQALERICQIRRLNEKHNFTLLCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 + VD ++ L + PG T + T ++ L A KT RVP L+E Sbjct: 77 LYTRVDNIAFRLLRNNTPGAYTFIFK--GTKEVPRRLMNAKRKTIGIRVPDNAIALALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL S G + + + + LI+ GG +G + T V + ++ Sbjct: 135 ALGEPLMSTSLILPGNETTEADPDDIRDKLEHAVDLIMHGGY--LGEQPTTVIDFSDGEI 192 Query: 190 RILRPGGLEI 199 I+R G ++ Sbjct: 193 NIVRVGAGDV 202 >gi|186683986|ref|YP_001867182.1| SUA5/yciO/yrdC domain-containing protein [Nostoc punctiforme PCC 73102] gi|186466438|gb|ACC82239.1| SUA5/yciO/yrdC, N-terminal domain protein [Nostoc punctiforme PCC 73102] Length = 225 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 53/195 (27%), Positives = 84/195 (43%), Gaps = 29/195 (14%) Query: 21 AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI---CHVSDISM-VKKHASV 76 AGL ++ PT+TV LA P ++ K+R PLI D+ + VK + Sbjct: 38 AGLLVSFPTDTVPALAAI---PEKAGLIFAAKQRSQDKPLILMAASAEDLWLYVKGSENE 94 Query: 77 DPLSLHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVPCGFTKKLIETYGHP 134 + L WPG LTLVL ++ P ++ + T RVP + I P Sbjct: 95 YKVWQELVGKHWPGGLTLVL---PASERLPKVMNPIDPTTIGIRVPNSAIARTILAQTGP 151 Query: 135 LAIPSANRSGQISITNVKHI---------LSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LA SAN SGQ + + I L+++ C+ G + +G+ ST+ Sbjct: 152 LATTSANFSGQPPLQTMAEIETQFPQVLTLATTECQ-------GETAAMGIPSTVAK-WT 203 Query: 186 EKKVRILRPGGLEIE 200 +ILR G ++++ Sbjct: 204 GINWQILRQGAIKLD 218 >gi|262371339|ref|ZP_06064657.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] gi|262313676|gb|EEY94725.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] Length = 189 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 6/75 (8%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ +A + L G +A PTE V+GL D N A + +IK+RP +I I Sbjct: 3 TTSVTEAAQCLKQGQVLAYPTEAVWGLGCDPYNEQAFLDILQIKQRPIEKGVILLAGQI- 61 Query: 69 MVKKHASVDPLSLHL 83 A V+PL HL Sbjct: 62 -----AQVEPLLEHL 71 >gi|16331389|ref|NP_442117.1| hypothetical protein slr0006 [Synechocystis sp. PCC 6803] gi|1001560|dbj|BAA10187.1| slr0006 [Synechocystis sp. PCC 6803] Length = 217 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 67/153 (43%), Gaps = 8/153 (5%) Query: 31 TVYGLAVDSRNPTAIRRLYEIKKRPAMNPL-ICHVSDISMVKKHASVDPLSLHLAKLFWP 89 T Y L V+ +P A+ +L K+ PL I D +M A + P + L LF P Sbjct: 38 TTYVLVVNGASPRAVAQLRAFKQFDKDQPLGILTRGDRAM--DVAKIPPAAKKLMGLF-P 94 Query: 90 GPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISIT 149 P+TL+++ L D P T + P F L+ PL +A G+ +T Sbjct: 95 LPITLIVEALPKLD--PGITQGFRNIFIACPDAFVFDLVGAMPFPLVCATAKVGGE-PVT 151 Query: 150 NVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 + + S ++PLI DGG + T+++ Sbjct: 152 SFEAA-SRYFEGQVPLIGDGGRCRYARRGTLID 183 >gi|190150467|ref|YP_001968992.1| hypothetical protein APP7_1198 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|189915598|gb|ACE61850.1| hypothetical protein APP7_1198 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] Length = 204 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 37/145 (25%), Positives = 58/145 (40%), Gaps = 2/145 (1%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 I + N L E L +A PTE V+GL + N +A+R L ++KKRP LI Sbjct: 15 IYLVKKMNNLENIVEQLKRNRVVAYPTEAVFGLGCNPNNESAVRALLKLKKRPEEKGLIL 74 Query: 63 HVSDISMVKKHASVDPLSLHLAKLF-WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 ++ + + L+ ++F P + + + + T T R+ C Sbjct: 75 IAPTKELLLPYIDENKLTAAHWQIFETPSERAITWVMPAKKAVPQYLTGQFDTIAVRLCC 134 Query: 122 -GFTKKLIETYGHPLAIPSANRSGQ 145 L E G L S N +GQ Sbjct: 135 IPAVIDLCERTGFALTSTSCNLTGQ 159 >gi|332991534|gb|AEF01589.1| putative double-stranded RNA-binding protein [Alteromonas sp. SN2] Length = 191 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 72/172 (41%), Gaps = 12/172 (6%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 + PTE V G+ D N A+ L +K+RP +I ++ S + + + + + H Sbjct: 25 LVYPTEAVMGIGCDPDNEEAVLALLALKQRPIEKGVILIAANYSQLLPYINDEAILQHRR 84 Query: 85 KLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSAN 141 WPGP T +L ++T L+ + K A K L E PL SAN Sbjct: 85 TEIVSSWPGPNTWLLPKSASTP-QWLTGKHEKIAVRVSNHPVVKALCEKLEKPLVSTSAN 143 Query: 142 RSGQ---ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 +GQ I+ + +I S+ IDG + STI + + +R Sbjct: 144 LTGQQPAITQQDAINIFGDSV-----FYIDGEVGGHAKPSTIRDGDTGEIIR 190 >gi|71279925|ref|YP_266809.1| putative RNA-binding protein [Colwellia psychrerythraea 34H] gi|123634304|sp|Q48AU1|RIMN_COLP3 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|71145665|gb|AAZ26138.1| putative RNA-binding protein [Colwellia psychrerythraea 34H] Length = 183 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 65/161 (40%), Gaps = 7/161 (4%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 + E G IA PTE V+GL D N A++RL ++K+R LI S + Sbjct: 4 KNVVEAFKNGGIIAYPTEAVFGLGCDPDNKEALKRLLKLKQRSPEKGLILLAGSYSQLLP 63 Query: 73 H--ASVDPLSLHLAKLF-WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + S P L L WP +T ++ +I L + + T R+ L Sbjct: 64 YIDDSKIPQDKRLTLLSRWPDGITQLVP--KNNNISSLLSGSFDTIAVRITSQPDVVALC 121 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169 + P+ SAN SGQ L + K++ I+ G Sbjct: 122 QQTNKPIVSTSANLSGQ-EPAKTWQSLDLVLSKQVDFILKG 161 >gi|167855223|ref|ZP_02477993.1| hypothetical protein HPS_06619 [Haemophilus parasuis 29755] gi|167853676|gb|EDS24920.1| hypothetical protein HPS_06619 [Haemophilus parasuis 29755] Length = 206 Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust. Identities = 47/185 (25%), Positives = 74/185 (40%), Gaps = 5/185 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E + G I PT++ Y L + A+ R+ I++ P + SD+S + Sbjct: 17 INQAVEIIKNGGVIVYPTDSGYALGCAIGDKHAMDRIVAIRRLPENHNFTLVCSDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-KLIET 130 +A V S L K P P T +L +T D+ KT RVP LI Sbjct: 77 TYALVTNQSYRLIKNNVPNPYTFILP--ATKDVPRRLMTKRKTIGIRVPNNVIALALISA 134 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G P+ S + + + + ++ LII GG +G T V + Sbjct: 135 LGEPILSCSLMLPNEAITQSDPDEIREHLEHQVDLIIHGGY--LGQSPTTVIDLTQDSPE 192 Query: 191 ILRPG 195 I+R G Sbjct: 193 IIRVG 197 >gi|56751762|ref|YP_172463.1| hypothetical protein syc1753_d [Synechococcus elongatus PCC 6301] gi|81301159|ref|YP_401367.1| translation factor SUA5 [Synechococcus elongatus PCC 7942] gi|56686721|dbj|BAD79943.1| hypothetical protein [Synechococcus elongatus PCC 6301] gi|81170040|gb|ABB58380.1| translation factor SUA5 [Synechococcus elongatus PCC 7942] Length = 233 Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 5/106 (4%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 E L G I PT++VY + D ++ A++R+ IK+ PL +S+ ++ + Sbjct: 22 EALRQGAVILYPTDSVYAIGCDVKDRAAVQRVRRIKEIDNDKPLTFICPSLSVAAQYGCI 81 Query: 77 DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK--TACFRVP 120 + L + PGP T LL T P N K TA R+P Sbjct: 82 SDRAFRLMRELVPGPYTF---LLPATPEVPRVVMNPKRRTAGIRIP 124 >gi|325955575|ref|YP_004239235.1| Sua5/YciO/YrdC/YwlC family protein [Weeksella virosa DSM 16922] gi|323438193|gb|ADX68657.1| Sua5/YciO/YrdC/YwlC family protein [Weeksella virosa DSM 16922] Length = 184 Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 7/186 (3%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 +++ E L G + PT+T+ GL ++ + AI ++Y IK RP LI V + + Sbjct: 2 TIQEIAERLLNGETMIYPTDTILGLGCNALDDKAIAKIYSIKNRPESKSLILLVDSPARL 61 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + V L+ L L PLT++ D +S N T R+ F ++I+ Sbjct: 62 QSIVDVPELTWDLIDLN-EKPLTIIYDDPRGLPKSLVSKDN--TIGIRLTKDPFCCQIIQ 118 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--GLESTIVNVQCEK 187 PL S N S Q + + I S +I +++ ++D + + STI+ + + Sbjct: 119 RIKAPLVSTSVNISSQKAAQSYADI-SPAILEKVDFVVDEAKTFLPKSEPSTIIQLTKDL 177 Query: 188 KVRILR 193 +V+++R Sbjct: 178 QVKVIR 183 >gi|291568165|dbj|BAI90437.1| hypothetical protein [Arthrospira platensis NIES-39] Length = 222 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 48/191 (25%), Positives = 82/191 (42%), Gaps = 13/191 (6%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L G + PT+TVY + D +A++++ +IK+ PL S +S + +A V Sbjct: 24 LKRGAVMLYPTDTVYAIGCDLTVKSAVQKVRQIKQISNDKPLTFLCSSLSNIADYAIVTD 83 Query: 79 LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA-NLKTACFRVPCG-FTKKLIETYGHPLA 136 + K PG T VL +T + L + KT RVP ++E+ G+P+ Sbjct: 84 EAYRTIKKLIPGSYTFVLP--ATKQVPKLVMSPKRKTTGIRVPDHPVCLAILESLGNPVI 141 Query: 137 IPSANRSGQ---------ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 SA+ + I K L ++ + +I+D G STI+++ + Sbjct: 142 STSAHIKEEDEPSALIRKIPQNYDKFQLFDALENLVDIIVDDGADLDYQVSTIIDLSADD 201 Query: 188 KVRILRPGGLE 198 V + R G E Sbjct: 202 PVLVRRGKGWE 212 >gi|30249687|ref|NP_841757.1| Sua5/YciO/YrdC/YwlC family protein [Nitrosomonas europaea ATCC 19718] gi|30180724|emb|CAD85636.1| SUA5/yciO/yrdC family:Sua5/YciO/YrdC/YwlC protein family [Nitrosomonas europaea ATCC 19718] Length = 210 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 24/85 (28%), Positives = 39/85 (45%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +R+A + + G IA PT++ Y L N A+ R+ I+K + D++ + Sbjct: 17 IRQAVDIVRKGGVIAYPTDSCYALGCQIGNKEAMDRIRTIRKVDQNHNFTLVCRDLAEIA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVL 96 +A VD L K PG T +L Sbjct: 77 TYAKVDNAQYRLLKAATPGSYTFIL 101 >gi|255319592|ref|ZP_05360804.1| Sua5/YciO/YrdC family protein [Acinetobacter radioresistens SK82] gi|262380778|ref|ZP_06073931.1| yrdC [Acinetobacter radioresistens SH164] gi|255303347|gb|EET82552.1| Sua5/YciO/YrdC family protein [Acinetobacter radioresistens SK82] gi|262297726|gb|EEY85642.1| yrdC [Acinetobacter radioresistens SH164] Length = 189 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 32/63 (50%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ +A E L G +A PTE V+GL D N A + +K+RP +I +S Sbjct: 3 TTSVTEAAECLSQGKVLAYPTEAVWGLGCDPYNEAAFHEILRLKQRPIEKGVILLAGQLS 62 Query: 69 MVK 71 V+ Sbjct: 63 QVE 65 >gi|238899277|ref|YP_002924960.1| putative translation factor, yrdC domain protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229467038|gb|ACQ68812.1| putative translation factor, yrdC domain protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 206 Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust. Identities = 41/165 (24%), Positives = 70/165 (42%), Gaps = 12/165 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + ++ + L G + PT++ Y L +A R+ +I++R + + D+S + Sbjct: 17 INQSIDLLKKGSVMVYPTDSGYALGCLLEKKSAQERICQIRERTSDHHFTLVCRDLSEIA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A +D + L K PG T +L +T ++ L KT RVP L++ Sbjct: 77 LYAYLDNSAFRLIKNNTPGRYTFILK--ATKEVPRRLMNEKRKTIGLRVPSNDIALALLD 134 Query: 130 TYGHPLA----IPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 PL I + Q +K L K++ LIIDGG Sbjct: 135 ALNEPLMSTTLILPGDDFAQFDPEQIKQKLG----KKVDLIIDGG 175 >gi|329119555|ref|ZP_08248239.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria bacilliformis ATCC BAA-1200] gi|327464342|gb|EGF10643.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria bacilliformis ATCC BAA-1200] Length = 206 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 45/188 (23%), Positives = 75/188 (39%), Gaps = 11/188 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +R+ + + G A PT++ Y L + A+ R+ I+K + L +D++ + Sbjct: 17 IRQVAQIVRGGGVAAYPTDSCYALGCRLGDKEAMERILRIRKIDLKHHLTLMCADLAELG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDL---LSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 +A VD + K PG T +L + +HP KT RVP L Sbjct: 77 TYAKVDNAQFRMLKAATPGSYTFILQATKEVPNRTLHP----KRKTIGLRVPDNAVALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + + + + + + L+IDGG G E T V V Sbjct: 133 LRELGEPLLSCTLMLPEDSEPLSDPYEIRDRLEHAVDLVIDGGWC--GTEPTTV-VDMTD 189 Query: 188 KVRILRPG 195 V ++R G Sbjct: 190 GVTLVREG 197 >gi|225077323|ref|ZP_03720522.1| hypothetical protein NEIFLAOT_02382 [Neisseria flavescens NRL30031/H210] gi|224951315|gb|EEG32524.1| hypothetical protein NEIFLAOT_02382 [Neisseria flavescens NRL30031/H210] Length = 190 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 46/196 (23%), Positives = 81/196 (41%), Gaps = 13/196 (6%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I + A R+ L G +A PTE+ YGL A+ +L +KKRP + Sbjct: 2 MMFPRILSAAAQRRLQAHLKKGGLVAYPTESCYGLGCVPTLSKALNQLIHLKKRPQHKGM 61 Query: 61 ICHVSDIS----MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTA 115 I + ++++ + LH A WP P T +L + + P L Sbjct: 62 IVIGHSLEQLQPLLQRPSENIQTMLHEA---WPAPKTFLLS--AGKKVLPSLRGKGRSKL 116 Query: 116 CFRVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174 RVP ++L + PL S NR+G+ + + + +++ ++ G I K Sbjct: 117 AVRVPAHAGARRLCQVLEMPLVSTSCNRAGKRACKTEREV-RRQFGRKV-WVVGGLIGKQ 174 Query: 175 GLESTIVNVQCEKKVR 190 S I++ + ++R Sbjct: 175 KTPSQIIDGETGVRLR 190 >gi|254523713|ref|ZP_05135768.1| Sua5/YciO/YrdC family protein [Stenotrophomonas sp. SKA14] gi|219721304|gb|EED39829.1| Sua5/YciO/YrdC family protein [Stenotrophomonas sp. SKA14] Length = 169 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 6/125 (4%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD--PLSLH 82 IA PTE V+GL D + A+ + +K+RP +I +++ ++ + P + Sbjct: 2 IAYPTEAVWGLGCDPSHEAAVHMVLRLKQRPIEKGMILVAAELPQLEGWVRLQALPDARQ 61 Query: 83 LAKLF-WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140 A L WPG T +L + P T R+ L +G PL SA Sbjct: 62 RAVLASWPGANTWILP--AGPRAQPWVTGEHSGIAVRISAHPLVAALCRAWGGPLVSTSA 119 Query: 141 NRSGQ 145 N +G+ Sbjct: 120 NLAGE 124 >gi|301169373|emb|CBW28973.1| predicted ribosome maturation factor [Haemophilus influenzae 10810] Length = 183 Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust. Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 8/126 (6%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83 +A PTE V+GL + ++ +A+++L ++K+RP LI + + + ++ L Sbjct: 16 VAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRPFVDFELINDEQL 75 Query: 84 AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT--KKLIETYGHPLAIPS 139 ++L + P T ++ STT T + R+ C + K L E G L S Sbjct: 76 SRLQGKYERPTTWIVPAKSTTSY--FLTGKFDSIAVRL-CDHSSVKALCELVGFALTSTS 132 Query: 140 ANRSGQ 145 AN +G+ Sbjct: 133 ANLTGE 138 >gi|152994766|ref|YP_001339601.1| SUA5/yciO/yrdC domain-containing protein [Marinomonas sp. MWYL1] gi|212288210|sp|A6VT87|RIMN_MARMS RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|150835690|gb|ABR69666.1| SUA5/yciO/yrdC domain [Marinomonas sp. MWYL1] Length = 185 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 29/52 (55%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 ++ + + + G IA PTE V+GL D N +A+RR+ +K RP LI Sbjct: 5 TSVEELADIIRQGGVIAYPTEAVWGLGCDPFNESAVRRILTLKSRPESKGLI 56 >gi|145642211|ref|ZP_01797778.1| predicted translation factor SUA5 [Haemophilus influenzae R3021] gi|145273071|gb|EDK12950.1| predicted translation factor SUA5 [Haemophilus influenzae 22.4-21] Length = 183 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 8/126 (6%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83 +A PTE V+GL + ++ +A+++L ++K+RP LI + + + ++ L Sbjct: 16 VAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRPFVDFEQINDEQL 75 Query: 84 AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF--TKKLIETYGHPLAIPS 139 ++L + P T ++ STT H L T + R+ C K L E G L S Sbjct: 76 SRLQGKYERPTTWIVPAKSTTS-HFL-TGKFDSIAVRL-CDHPSVKALCELTGFALTSTS 132 Query: 140 ANRSGQ 145 AN +G+ Sbjct: 133 ANLTGE 138 >gi|229587599|ref|YP_002869718.1| hypothetical protein PFLU0021 [Pseudomonas fluorescens SBW25] gi|229359465|emb|CAY46306.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25] Length = 185 Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 50/128 (39%), Gaps = 9/128 (7%) Query: 21 AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80 AG IA PTE V+GL D N A+ RL IK R LI +I P Sbjct: 16 AGAVIAYPTEAVWGLGCDPWNEEAVDRLLAIKNRSVDKGLILVADNIRQFDFLFEDFPQD 75 Query: 81 L--HLAKLFWPGPLTLVL---DLL--STTDIHPLSTANLKT-ACFRVPCGFTKKLIETYG 132 +A WPGP T ++ LL T +H + R C LI T Sbjct: 76 WIDRMAST-WPGPNTWLVPHQGLLPEWVTGVHDTVAVRVTDHPLVRDLCSLVGPLISTSA 134 Query: 133 HPLAIPSA 140 +P P+A Sbjct: 135 NPQGRPAA 142 >gi|113460156|ref|YP_718212.1| Sua5 family translation factor [Haemophilus somnus 129PT] gi|112822199|gb|ABI24288.1| possible translation factor, Sua5 family [Haemophilus somnus 129PT] Length = 192 Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 10/126 (7%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL-SLHL 83 +A PTE V+GL + + +A+ +L +K+RP LI + + + S H Sbjct: 25 VAYPTEAVFGLGCNPFSQSAVEKLLILKQRPREKGLILVAPKLDYFFSFIDKEQINSQHW 84 Query: 84 AKL--FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV---PCGFTKKLIETYGHPLAIP 138 KL +P P+T ++ + DI N + RV P K L E G L Sbjct: 85 QKLQQTYPRPITWIVP--AKKDIAKFLCGNFNSIAIRVSQHPA--IKILCEQTGFALTST 140 Query: 139 SANRSG 144 SAN SG Sbjct: 141 SANLSG 146 >gi|213865416|ref|ZP_03387535.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 58 Score = 40.4 bits (93), Expect = 0.42, Method: Composition-based stats. Identities = 21/51 (41%), Positives = 30/51 (58%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 A+ A + L+ IA PTE V+G+ D + TA+ RL E+K+RP LI Sbjct: 1 AIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLI 51 >gi|206900558|ref|YP_002251596.1| [NiFe] hydrogenase maturation protein HypF [Dictyoglomus thermophilum H-6-12] gi|206739661|gb|ACI18719.1| [NiFe] hydrogenase maturation protein HypF [Dictyoglomus thermophilum H-6-12] Length = 742 Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 59/138 (42%), Gaps = 4/138 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ E+LD G +AI + LA D+ +R+L E KKRP+ P + DI Sbjct: 193 KDLFKRISEYLDEGKILAIKGIGGFHLACDATQDDTVRKLRERKKRPS-KPFALMMKDIE 251 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128 +K++ V + K P+ L L + DI PL +P LI Sbjct: 252 TIKEYCFVSEEEEKILKS-KQSPIVL-LRIKDLKDISPLVAPGNNYLGVMLPYAPYHHLI 309 Query: 129 -ETYGHPLAIPSANRSGQ 145 + + PL + S N S + Sbjct: 310 FDHFKKPLIMTSGNLSDE 327 >gi|260583205|ref|ZP_05850984.1| fructose 1,6-bisphosphatase II [Haemophilus influenzae NT127] gi|260093762|gb|EEW77671.1| fructose 1,6-bisphosphatase II [Haemophilus influenzae NT127] Length = 183 Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust. Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 8/126 (6%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83 +A PTE V+GL + ++ +A+++L ++K+RP LI + + + ++ L Sbjct: 16 VAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRPFVDFELINDEQL 75 Query: 84 AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT--KKLIETYGHPLAIPS 139 ++L + P T ++ STT T + R+ C + K L E G L S Sbjct: 76 SRLQGKYERPTTWIVPAKSTTSY--FLTGKFDSIAVRL-CDHSSVKALCELVGFALTSTS 132 Query: 140 ANRSGQ 145 AN +G+ Sbjct: 133 ANLTGE 138 >gi|17227612|ref|NP_484160.1| hypothetical protein alr0116 [Nostoc sp. PCC 7120] gi|17135094|dbj|BAB77640.1| alr0116 [Nostoc sp. PCC 7120] Length = 194 Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust. Identities = 52/189 (27%), Positives = 80/189 (42%), Gaps = 15/189 (7%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI---CHVSDIS-MVKKHA 74 + AG ++ PT+TV LA P ++ K+R PLI D+ V+ Sbjct: 13 VGAGGLVSFPTDTVPALAT---LPEQAELIFAAKQRSQDKPLILMGASAEDLWPYVEGRE 69 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHP 134 + + +WPG LTLV+ S ++ + T RVP + I + P Sbjct: 70 QDKQIWEQVVSQYWPGALTLVVPA-SKRVPEVMNPIDPTTIGIRVPKSAIAQKILSQTGP 128 Query: 135 LAIPSANRSGQISITNVKHI---LSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 LA SAN SGQ ++ + I + + E + G IGL ST+ E +I Sbjct: 129 LATTSANFSGQPALLTMAEIDAQFPTVLTLESTAVEAEG---IGLPSTVAKWTGENW-QI 184 Query: 192 LRPGGLEIE 200 LR G + +E Sbjct: 185 LRQGAVSLE 193 >gi|212288271|sp|Q0I1B6|RIMN_HAES1 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN Length = 183 Score = 40.0 bits (92), Expect = 0.43, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 10/126 (7%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL-SLHL 83 +A PTE V+GL + + +A+ +L +K+RP LI + + + S H Sbjct: 16 VAYPTEAVFGLGCNPFSQSAVEKLLILKQRPREKGLILVAPKLDYFFSFIDKEQINSQHW 75 Query: 84 AKL--FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV---PCGFTKKLIETYGHPLAIP 138 KL +P P+T ++ + DI N + RV P K L E G L Sbjct: 76 QKLQQTYPRPITWIVP--AKKDIAKFLCGNFNSIAIRVSQHPA--IKILCEQTGFALTST 131 Query: 139 SANRSG 144 SAN SG Sbjct: 132 SANLSG 137 >gi|303327758|ref|ZP_07358198.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio sp. 3_1_syn3] gi|302862119|gb|EFL85053.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio sp. 3_1_syn3] Length = 82 Score = 40.0 bits (92), Expect = 0.43, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 27/49 (55%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 L A L G + PTET YGL + + A+ R+Y++K+RP PL Sbjct: 11 LEAAARCLRRGGVVIFPTETFYGLGCLAADAAAVGRIYQLKRRPVQRPL 59 >gi|326796760|ref|YP_004314580.1| ribosome maturation factor rimN [Marinomonas mediterranea MMB-1] gi|326547524|gb|ADZ92744.1| ribosome maturation factor rimN [Marinomonas mediterranea MMB-1] Length = 185 Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 31/58 (53%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 ++++ + + + G +A PTE V+GL D N A+RR+ +K RP LI D Sbjct: 4 TSSIAEITDIIRQGGVVAYPTEAVWGLGCDPYNELAVRRILALKSRPEEKGLILITGD 61 >gi|330889220|gb|EGH21881.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. mori str. 301020] Length = 141 Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 41/86 (47%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E + AG + PT++ Y L + +AI R+ +++ + D+S + Sbjct: 30 IKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLSQLG 89 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLD 97 A VD + K PGP T +L+ Sbjct: 90 LFAKVDTGAFRALKAHTPGPYTFILN 115 >gi|229847438|ref|ZP_04467538.1| hypothetical protein CGSHi7P49H1_08654 [Haemophilus influenzae 7P49H1] gi|229809676|gb|EEP45402.1| hypothetical protein CGSHi7P49H1_08654 [Haemophilus influenzae 7P49H1] Length = 183 Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 8/126 (6%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83 +A PTE V+GL + ++ +A+++L ++K+RP LI + + + ++ L Sbjct: 16 VAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRPFVDFEQINDEQL 75 Query: 84 AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF--TKKLIETYGHPLAIPS 139 ++L + P T ++ STT H L T + R+ C K L E G L S Sbjct: 76 SRLQGKYERPTTWIVPAKSTTP-HFL-TGKFDSIAIRL-CDHPSVKALCEITGFALTSTS 132 Query: 140 ANRSGQ 145 AN +G+ Sbjct: 133 ANLTGE 138 >gi|206602460|gb|EDZ38941.1| Putative translation factor (SUA5) [Leptospirillum sp. Group II '5-way CG'] Length = 204 Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 80/162 (49%), Gaps = 21/162 (12%) Query: 46 RRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL----HLAKLFWPGPLTLVLDLLST 101 RRL+ IK R P++ +S+V + A + P ++ H+++ WP TLVL Sbjct: 54 RRLFSIKARSPGKPILYLAGSLSIVARFARL-PATVRCRRHVSR--WPNFRTLVLP-ARP 109 Query: 102 TDIHPLSTANLKTACFRVPCGFTKKLIETY-GHPLAIPSANRSGQISITNVKHILSSSIC 160 +H L ++ FR+P + +L + G PL+ S N SG + + + IC Sbjct: 110 LAVH-LGMSHNGGVAFRIPEERSLRLFLNFLGTPLSGTSLNLSGCPPLRSPEE-----IC 163 Query: 161 KEIPL---IIDGGISKIGLESTIVNV-QCEKKVRILRPGGLE 198 + P +++ G+ G S +++V +C + R++RPG L+ Sbjct: 164 RAFPFLDGVVEAGVLPGGPPSPVIDVTKCPE--RVVRPGVLK 203 >gi|119898405|ref|YP_933618.1| hypothetical protein azo2114 [Azoarcus sp. BH72] gi|119670818|emb|CAL94731.1| conserved hypothetical protein [Azoarcus sp. BH72] Length = 210 Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust. Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 7/112 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +R+A E + G +A PT++ Y L + + + R+ I+ + D+S + Sbjct: 17 IRQAAEIIRGGGLVAFPTDSAYALGGHTGDAPLLERIRRIRGVDERHQFTLLCRDLSEIA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLD---LLSTTDIHPLSTANLKTACFRVP 120 +A VD L K PG T +L+ L +HP KT R+P Sbjct: 77 TYARVDNSQYRLLKAVTPGAYTFILEGTRELPRRVLHP----KRKTIGLRIP 124 >gi|170718186|ref|YP_001785212.1| SUA5/yciO/yrdC domain-containing protein [Haemophilus somnus 2336] gi|212288206|sp|B0UWV9|RIMN_HAES2 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|168826315|gb|ACA31686.1| SUA5/yciO/yrdC domain [Haemophilus somnus 2336] Length = 183 Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 10/126 (7%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL-SLHL 83 +A PTE V+GL + + +A+ +L +K+RP LI + + + S H Sbjct: 16 VAYPTEAVFGLGCNPFSQSAVEKLLILKQRPREKGLILVAPKLDYFFSFIDKEQINSQHW 75 Query: 84 AKL--FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV---PCGFTKKLIETYGHPLAIP 138 KL +P P+T ++ + DI N + RV P K L E G L Sbjct: 76 QKLQQTYPRPITWIVP--AKKDIAKFLCGNFNSIAIRVSQHPA--IKILCEQTGFALTST 131 Query: 139 SANRSG 144 SAN SG Sbjct: 132 SANLSG 137 >gi|307257194|ref|ZP_07538966.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864356|gb|EFM96267.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 184 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 54/138 (39%), Gaps = 2/138 (1%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 N L E L +A PTE V+GL + N +A+R L ++KKRP LI + Sbjct: 2 NNLENIVEQLKRNRVVAYPTEAVFGLGCNPNNESAVRALLKLKKRPEEKGLILIAPTKEL 61 Query: 70 VKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 + + + L S H P + + + + T T R+ C L Sbjct: 62 LLPYIDENKLTSAHWQIFETPSERAITWVMPAKKAVPQYLTGQFDTIAVRLCCIPAVIDL 121 Query: 128 IETYGHPLAIPSANRSGQ 145 E G L S N +GQ Sbjct: 122 CERTGFALTSTSCNLTGQ 139 >gi|209694705|ref|YP_002262633.1| hypothetical protein VSAL_I1156 [Aliivibrio salmonicida LFI1238] gi|208008656|emb|CAQ78841.1| conserved hypothetical protein [Aliivibrio salmonicida LFI1238] Length = 206 Score = 40.0 bits (92), Expect = 0.48, Method: Compositional matrix adjust. Identities = 44/178 (24%), Positives = 71/178 (39%), Gaps = 7/178 (3%) Query: 20 DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL 79 D G+ I PT++ Y L N A+ R+ +I++ + D+S + +A VD Sbjct: 26 DGGV-IIYPTDSGYALGCQIENKQALERICQIRRLDDKHNFTLVCRDLSELSIYARVDNT 84 Query: 80 SLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIETYGHPLAI 137 L K PG T + T ++ L KT RVP L+E G PL Sbjct: 85 MFRLLKNNTPGAYTFIFK--GTKEVPRRLMNPKRKTIGMRVPDNKIALDLLEALGEPLMS 142 Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 + G + + + LI++GG +G + T V + ++I R G Sbjct: 143 TTLILPGNEMAEADPEAIRDQLEHAVDLIMNGGY--LGEQPTTVIDFSDDDIKIARVG 198 >gi|312111044|ref|YP_003989360.1| (NiFe) hydrogenase maturation protein HypF [Geobacillus sp. Y4.1MC1] gi|311216145|gb|ADP74749.1| (NiFe) hydrogenase maturation protein HypF [Geobacillus sp. Y4.1MC1] Length = 753 Score = 40.0 bits (92), Expect = 0.48, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D A+ K E L G +AI Y LA D+ N A+R L + K+R A P V DI Sbjct: 199 DEKAIEKTAELLRTGRIVAIKGLGGYHLACDAENEEAVRELRKRKRRSA-KPFALMVKDI 257 Query: 68 SMVKK 72 KK Sbjct: 258 ETAKK 262 >gi|307130977|ref|YP_003882993.1| putative RNA-binding protein [Dickeya dadantii 3937] gi|306528506|gb|ADM98436.1| predicted RNA-binding protein [Dickeya dadantii 3937] Length = 206 Score = 40.0 bits (92), Expect = 0.48, Method: Compositional matrix adjust. Identities = 44/186 (23%), Positives = 73/186 (39%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + E L G I PT++ Y L + A+ R+ I+ + D+S + Sbjct: 17 INQTVEILHKGGVIVYPTDSGYALGCMLEDKAAMERICRIRDLDQNHNFTLMCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD + L K PG T +L +T ++ L KT RVP +L+ Sbjct: 77 SYAYVDNAAFRLMKNNTPGNYTFILK--ATKEVPRRLMNEKRKTIGMRVPSNPIALELLA 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 PL + G + + + K + L+I GG +G + T V E Sbjct: 135 ALNEPLMSTTLMLPGNDFAESDPEEIQEQLGKRVDLVIHGGF--LGQQPTTVIDLTESVP 192 Query: 190 RILRPG 195 ++R G Sbjct: 193 VVVREG 198 >gi|156933738|ref|YP_001437654.1| hypothetical protein ESA_01564 [Cronobacter sakazakii ATCC BAA-894] gi|156531992|gb|ABU76818.1| hypothetical protein ESA_01564 [Cronobacter sakazakii ATCC BAA-894] Length = 183 Score = 40.0 bits (92), Expect = 0.48, Method: Compositional matrix adjust. Identities = 43/173 (24%), Positives = 70/173 (40%), Gaps = 6/173 (3%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 I PT++ Y L + A+ R+ I+ P + D+S + ++ VD ++ L Sbjct: 7 IVYPTDSGYALGCKLEDKGAMERICRIRDLPDGHNFTLMCRDLSELSTYSYVDNVAFRLI 66 Query: 85 KLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142 K PG T +L T ++ L KT RVP L+E P+ S Sbjct: 67 KNNTPGNYTFILK--GTKEVPRRLLQEKRKTIGLRVPSNPIALALLEALDEPMLSTSLML 124 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 G + + + K++ LII GG +G + T V + +LR G Sbjct: 125 PGSEFTESDPDEIKDRLEKQVDLIIHGGY--LGQQPTTVIDLTDDAPVVLREG 175 >gi|295400430|ref|ZP_06810409.1| (NiFe) hydrogenase maturation protein HypF [Geobacillus thermoglucosidasius C56-YS93] gi|294977705|gb|EFG53304.1| (NiFe) hydrogenase maturation protein HypF [Geobacillus thermoglucosidasius C56-YS93] Length = 753 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D A+ K E L G +AI Y LA D+ N A+R L + K+R A P V DI Sbjct: 199 DEKAIEKTAELLRTGRIVAIKGLGGYHLACDAENEEAVRELRKRKRRSA-KPFALMVKDI 257 Query: 68 SMVKK 72 KK Sbjct: 258 ETAKK 262 >gi|255067572|ref|ZP_05319427.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria sicca ATCC 29256] gi|255048193|gb|EET43657.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria sicca ATCC 29256] Length = 206 Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust. Identities = 44/188 (23%), Positives = 75/188 (39%), Gaps = 11/188 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A + + +G I PT++ Y L + A+ R+ I+K + L +D+S + Sbjct: 17 IKQAADIVRSGGVIVYPTDSCYALGCKLGDKAAMERILAIRKIDLKHHLTLMCADLSELG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDL---LSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 +A VD K PG T +L + +HP KT RVP L Sbjct: 77 TYAKVDNAQFRQLKAATPGSYTFILQATKEVPNRTLHP----KRKTIGLRVPDNTIALSL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ G PL + + + + + L+IDGG G E T V + Sbjct: 133 LQELGEPLLSCTLMLPEDDEPLTDPYEIRDRLEHSVDLVIDGGWC--GTEPTTV-IDMTD 189 Query: 188 KVRILRPG 195 ++R G Sbjct: 190 GTELIRQG 197 >gi|328675606|gb|AEB28281.1| Sua5 YciO YrdC YwlC family protein [Francisella cf. novicida 3523] Length = 204 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 49/191 (25%), Positives = 82/191 (42%), Gaps = 6/191 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++ LD IAIPT++ Y LA ++ I ++ +I+ + + D+S + Sbjct: 17 LKELANILDNDGVIAIPTDSGYALACSMKSKKGIDKIIKIRNLDSSHNFTLCCKDLSEIS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCGFTKKLIET 130 ++A VD + L K + PG T +L +T + L T + T RV + K I Sbjct: 77 EYAKVDNNAYRLLKRYTPGSYTFILK--ATKKVSSLLVTKSKNTVGIRVSEHYVPKAISA 134 Query: 131 -YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL + S G + + + I I +++ G + T V E Sbjct: 135 EIGEPLVVSSFIIPGHQHVVTDCADVDNQIMNYIDAVVESDYC--GYDPTTVVELLELPY 192 Query: 190 RILRPGGLEIE 200 +ILR G EI+ Sbjct: 193 QILRQGAGEID 203 >gi|307246055|ref|ZP_07528137.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307250396|ref|ZP_07532343.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307252778|ref|ZP_07534669.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307255037|ref|ZP_07536855.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259473|ref|ZP_07541198.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307263811|ref|ZP_07545417.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|306852990|gb|EFM85213.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306857525|gb|EFM89634.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306859810|gb|EFM91832.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306861910|gb|EFM93886.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866409|gb|EFM98272.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306870932|gb|EFN02670.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 187 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 56/138 (40%), Gaps = 2/138 (1%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 N L E L +A PTE V+GL + N +A+R L ++KKRP LI + Sbjct: 5 NNLENIVEQLKRNRVVAYPTEAVFGLGCNPNNESAVRALLKLKKRPEEKGLILIAPTKEL 64 Query: 70 VKKHASVDPLSLHLAKLF-WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 + + + L+ ++F P + + + + T T R+ C L Sbjct: 65 LLPYIDENKLTAAHWQIFETPSERAITWVMPAKKAVPQYLTGQFDTIAVRLCCIPAVIDL 124 Query: 128 IETYGHPLAIPSANRSGQ 145 E G L S N +GQ Sbjct: 125 CERTGFALTSTSCNLTGQ 142 >gi|167561725|ref|ZP_02354641.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia oklahomensis EO147] Length = 144 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 50/120 (41%), Gaps = 20/120 (16%) Query: 216 ETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKL 275 + + P++ G LK+HYAPR+ + L P E L R + E + S+ G Sbjct: 24 DATAPRASGTLKAHYAPRTPLAL-----APFERLERLLSAARDAGERIALVARASRAGAW 78 Query: 276 KEA---------------AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 A L+ ++ D + + I +P+ IA+N+RL RAAA Sbjct: 79 AHTDGVHFVAAPEDPLVYARELYGLLRALDRAQVARILVEKLPDTAEWIAVNDRLGRAAA 138 >gi|226953462|ref|ZP_03823926.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter sp. ATCC 27244] gi|226835804|gb|EEH68187.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter sp. ATCC 27244] Length = 205 Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust. Identities = 44/188 (23%), Positives = 77/188 (40%), Gaps = 10/188 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + + AG + PT+ Y + N +A+ R+ +I+ + D+S + Sbjct: 16 ITQAVDRIRAGDVVVYPTDAAYAIGCQIGNKSAMERIAQIRGLGPKHQYAIMCCDLSDIA 75 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127 +A VD L K P T +L S +HP KT R+P + L Sbjct: 76 TYAKVDNAMYRLLKNNTPAVTTFILPATSEVPKRLMHP----KKKTIGLRIPSNPVAQAL 131 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ G PL + Q + + + + + K I + ID G + S IV++ E Sbjct: 132 LKELGEPLLTSTLILPDQKDPLDDPYDIENQLGKRIDVFIDSGFGTLSTTS-IVDLSGEN 190 Query: 188 KVRILRPG 195 I+R G Sbjct: 191 P-EIIRRG 197 >gi|165976566|ref|YP_001652159.1| hypothetical protein APJL_1159 [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|303250111|ref|ZP_07336313.1| hypothetical protein APP6_1523 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303253285|ref|ZP_07339434.1| hypothetical protein APP2_0592 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307248163|ref|ZP_07530191.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|212277663|sp|B0BQ80|RIMN_ACTPJ RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|212277727|sp|B3GY27|RIMN_ACTP7 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|165876667|gb|ABY69715.1| hypothetical protein APJL_1159 [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|302647967|gb|EFL78174.1| hypothetical protein APP2_0592 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302651174|gb|EFL81328.1| hypothetical protein APP6_1523 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306855340|gb|EFM87515.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 184 Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 56/138 (40%), Gaps = 2/138 (1%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 N L E L +A PTE V+GL + N +A+R L ++KKRP LI + Sbjct: 2 NNLENIVEQLKRNRVVAYPTEAVFGLGCNPNNESAVRALLKLKKRPEEKGLILIAPTKEL 61 Query: 70 VKKHASVDPLSLHLAKLF-WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 + + + L+ ++F P + + + + T T R+ C L Sbjct: 62 LLPYIDENKLTAAHWQIFETPSERAITWVMPAKKAVPQYLTGQFDTIAVRLCCIPAVIDL 121 Query: 128 IETYGHPLAIPSANRSGQ 145 E G L S N +GQ Sbjct: 122 CERTGFALTSTSCNLTGQ 139 >gi|253998091|ref|YP_003050154.1| SUA5/yciO/yrdC domain-containing protein [Methylovorus sp. SIP3-4] gi|313200156|ref|YP_004038814.1| sua5/ycio/yrdc domain-containing protein [Methylovorus sp. MP688] gi|253984770|gb|ACT49627.1| SUA5/yciO/yrdC domain protein [Methylovorus sp. SIP3-4] gi|312439472|gb|ADQ83578.1| SUA5/yciO/yrdC domain protein [Methylovorus sp. MP688] Length = 181 Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 1/85 (1%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 R+ +L G IA PTE+ +GL D + ++R+ +K RP LI + K+ Sbjct: 5 RELRHYLRHGGVIAYPTESCFGLGCDPHSRLGVQRILRLKGRPQRKGLILIGDQQTRFKR 64 Query: 73 H-ASVDPLSLHLAKLFWPGPLTLVL 96 A + P WPGP T ++ Sbjct: 65 LIAPLSPEQQARVATTWPGPHTWLV 89 >gi|219872045|ref|YP_002476420.1| putative translation factor (SUA5) [Haemophilus parasuis SH0165] gi|219692249|gb|ACL33472.1| putative translation factor (SUA5) [Haemophilus parasuis SH0165] Length = 206 Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 53/125 (42%), Gaps = 3/125 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E + G I PT++ Y L + A+ R+ I++ P + SD+S + Sbjct: 17 INQAVEIIKNGGVIVYPTDSGYALGCAIGDKHAMDRIVAIRRLPENHNFTLVCSDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-KLIET 130 +A V S L K P P T +L +T D+ KT RVP LI Sbjct: 77 TYALVTNQSYRLIKNNVPNPYTFILP--ATKDVPRRLMTKRKTIGIRVPNNVIALALISA 134 Query: 131 YGHPL 135 G P+ Sbjct: 135 LGEPI 139 >gi|157961471|ref|YP_001501505.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella pealeana ATCC 700345] gi|157846471|gb|ABV86970.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella pealeana ATCC 700345] Length = 206 Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust. Identities = 46/190 (24%), Positives = 81/190 (42%), Gaps = 6/190 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + G I PT++ Y L + A+ ++ I++ + D S + Sbjct: 17 ISQAVNVIKTGGVIVYPTDSGYALGCLIGDKDAMSKIARIRQIDNDHNFSLMCRDQSELA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-KLIET 130 +A VD + L K PGP T + + S L KT RVP L+E Sbjct: 77 TYARVDNQAYRLLKQNTPGPYTFIF-MASKEVPKRLQNPKKKTIGIRVPDNVIALALLEA 135 Query: 131 YGHPLAIPSANRSG-QISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL S G + + ++ +HI + ++ LII GG +G + T V + ++ Sbjct: 136 LGEPLMSTSLILPGKEFTESDPEHI-RDILEHQVDLIIHGGY--LGEKPTTVIDLSDGEI 192 Query: 190 RILRPGGLEI 199 ++R G ++ Sbjct: 193 EVIREGAGDV 202 >gi|145631687|ref|ZP_01787450.1| hypothetical protein CGSHi22421_05142 [Haemophilus influenzae R3021] gi|144982710|gb|EDJ90246.1| hypothetical protein CGSHi22421_05142 [Haemophilus influenzae R3021] Length = 183 Score = 39.7 bits (91), Expect = 0.56, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 8/126 (6%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83 +A PTE V+GL + ++ +A+++L ++K+RP LI + + + ++ L Sbjct: 16 VAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRPFVDFEQINDEQL 75 Query: 84 AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF--TKKLIETYGHPLAIPS 139 ++L + P T ++ STT H L T + R+ C K L E G L S Sbjct: 76 SRLQGKYERPTTWIVPAKSTTP-HFL-TGKFDSIAIRL-CDHPSVKALCEITGFALTSTS 132 Query: 140 ANRSGQ 145 AN +G+ Sbjct: 133 ANLTGE 138 >gi|59711642|ref|YP_204418.1| hypothetical protein VF_1035 [Vibrio fischeri ES114] gi|59479743|gb|AAW85530.1| conserved protein [Vibrio fischeri ES114] Length = 206 Score = 39.7 bits (91), Expect = 0.58, Method: Compositional matrix adjust. Identities = 43/186 (23%), Positives = 74/186 (39%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + G + PT++ Y L N A+ R+ +I++ + D+S + Sbjct: 17 INQAVAIIRDGGVVIYPTDSGYALGCQLENKQALERICQIRRLDDKHNFTLLCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD L K PG T + T ++ L KT RVP L+E Sbjct: 77 IYARVDNSIFRLLKNNTPGAYTFIFK--GTKEVPRRLMNPKRKTIGMRVPDNKIALDLLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL + G + + + + LI++GG +G + T V + + Sbjct: 135 ALGEPLMSTTLILPGNEMAESDPEAIRDQLEHAVDLIMNGGY--LGEQPTTVIDFSDDDI 192 Query: 190 RILRPG 195 +I R G Sbjct: 193 KIARVG 198 >gi|332534849|ref|ZP_08410672.1| YciO family protein [Pseudoalteromonas haloplanktis ANT/505] gi|332035709|gb|EGI72197.1| YciO family protein [Pseudoalteromonas haloplanktis ANT/505] Length = 206 Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust. Identities = 48/190 (25%), Positives = 76/190 (40%), Gaps = 14/190 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + + G + PT++ Y + + N A R+ I+ + D+S + Sbjct: 17 ISQAVDIIKQGGVVVYPTDSGYAIGCNIGNKQAKERIERIRGIEKNDNFTLVCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRV-----PCGFTK 125 +A VD L K PGP T + T ++ L KT RV C Sbjct: 77 TYARVDNQLFRLIKNNTPGPYTFIFK--GTKEVPKRLLNDKKKTIGMRVIEHPIACALLA 134 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +L G PL S GQ + + + K + LII GG + ++T V Sbjct: 135 EL----GEPLMSCSLILPGQQFTESDPDEILERLDKHVDLIIHGG--HLAEQATTVIDLS 188 Query: 186 EKKVRILRPG 195 E +V+ILR G Sbjct: 189 EDEVKILRVG 198 >gi|145633852|ref|ZP_01789574.1| trigger factor [Haemophilus influenzae 3655] gi|144985294|gb|EDJ92133.1| trigger factor [Haemophilus influenzae 3655] Length = 183 Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 62/126 (49%), Gaps = 8/126 (6%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83 +A PTE V+GL + ++ +A+++L ++K+RP LI + + + + ++ L Sbjct: 16 VAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRPFVNFEQINDEQL 75 Query: 84 AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF--TKKLIETYGHPLAIPS 139 ++L + P T ++ STT H L T + R+ C K L E G L S Sbjct: 76 SRLQGKYERPTTWIVPAKSTTP-HFL-TGKFDSIAIRL-CDHPSVKALCELTGFALTSTS 132 Query: 140 ANRSGQ 145 AN +G+ Sbjct: 133 ANLTGE 138 >gi|145635688|ref|ZP_01791384.1| hypothetical protein CGSHiAA_01574 [Haemophilus influenzae PittAA] gi|145267083|gb|EDK07091.1| hypothetical protein CGSHiAA_01574 [Haemophilus influenzae PittAA] Length = 183 Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 8/126 (6%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83 +A PTE V+GL + ++ +A+++L ++K+RP LI + + + ++ L Sbjct: 16 VAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRPFVDFEQINDEQL 75 Query: 84 AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF--TKKLIETYGHPLAIPS 139 ++L + P T ++ STT H L T + R+ C K L E G L S Sbjct: 76 SRLQGKYERPTTWIVPAKSTTP-HFL-TGKFDSIAIRL-CDHPSVKALCEITGFALTSTS 132 Query: 140 ANRSGQ 145 AN +G+ Sbjct: 133 ANLTGE 138 >gi|307250416|ref|ZP_07532363.1| hypothetical protein appser4_11970 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306857545|gb|EFM89654.1| hypothetical protein appser4_11970 [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 205 Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust. Identities = 54/194 (27%), Positives = 80/194 (41%), Gaps = 15/194 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E + G I PT++ Y L A+ R+ I+K P + SD+S + Sbjct: 17 INQAVEIIKNGGVIIYPTDSGYALGCAIGEKHAMDRIVAIRKLPENHNFTLVCSDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 +A V S L K P P T +L +T D+ KT RVP LI Sbjct: 77 TYALVTNQSYRLIKNNTPNPYTFILP--ATKDVPRRLMTKRKTIGIRVPDNAIALALIAA 134 Query: 131 YGHP-----LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 G P L +P +I+ ++ I + + LII GG +G E T V Sbjct: 135 LGEPILSCSLMLPDT----EITESDPDEI-REHLEHRVDLIIHGGY--LGQEPTTVIDLT 187 Query: 186 EKKVRILRPGGLEI 199 E +I+R G +I Sbjct: 188 EDAPKIIREGSGDI 201 >gi|261866941|ref|YP_003254863.1| protein YrdC [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412273|gb|ACX81644.1| protein YrdC [Aggregatibacter actinomycetemcomitans D11S-1] Length = 183 Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 6/125 (4%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83 +A PTE V+GL + + +A+ L +K+RP LI + + + PL+ LH Sbjct: 16 VAYPTEAVFGLGCNPNSQSAVENLLVLKQRPVSKGLILIATALDFLLPFIDERPLAELHW 75 Query: 84 AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI-ETYGHPLAIPSA 140 +L + P T V+ TT T + + R+ KL+ E G L SA Sbjct: 76 QRLTAQYARPTTWVVPAKKTTP--KFLTGDFDSIAVRISQHPAVKLLCEQAGFALTSTSA 133 Query: 141 NRSGQ 145 N SGQ Sbjct: 134 NLSGQ 138 >gi|289677573|ref|ZP_06498463.1| SUA5/yciO/yrdC, N-terminal [Pseudomonas syringae pv. syringae FF5] Length = 55 Score = 39.7 bits (91), Expect = 0.62, Method: Composition-based stats. Identities = 19/44 (43%), Positives = 27/44 (61%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP 55 +++A + + AG IA PTE V+GL D + A+ RL IK RP Sbjct: 7 VQQAAQDIRAGAVIAYPTEAVWGLGCDPWDEEAVYRLLAIKSRP 50 >gi|222874698|gb|EEF11829.1| predicted protein [Populus trichocarpa] Length = 302 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 6/130 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S + +A E L G I PT++ Y L + A+ R+ +I++ P + SD+S Sbjct: 148 SRLINQAVEILRQGGVIVYPTDSGYALGCMIGDKHAMDRIVKIRQLPEGHNFTLVCSDLS 207 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVPCG-FTK 125 + ++ V+ L K PG T + LS T P L T+ KT RVP Sbjct: 208 ELSTYSVVNNSVYRLIKNNTPGRYTFI---LSATKELPRRLMTSKRKTIGIRVPDNQIAL 264 Query: 126 KLIETYGHPL 135 L+++ G P+ Sbjct: 265 DLLKSLGEPI 274 >gi|197335779|ref|YP_002155838.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio fischeri MJ11] gi|121308593|dbj|BAF43688.1| hypothetical protein [Vibrio fischeri] gi|197317269|gb|ACH66716.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio fischeri MJ11] Length = 206 Score = 39.7 bits (91), Expect = 0.63, Method: Compositional matrix adjust. Identities = 43/178 (24%), Positives = 72/178 (40%), Gaps = 7/178 (3%) Query: 20 DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL 79 D G+ + PT++ Y L N A+ R+ +I++ + D+S + +A VD Sbjct: 26 DGGV-VIYPTDSGYALGCQLENKQALERICQIRRLDDKHNFTLLCRDLSELSIYARVDNS 84 Query: 80 SLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIETYGHPLAI 137 L K PG T + T ++ L KT RVP L+E G PL Sbjct: 85 IFRLLKNNTPGAYTFIFK--GTKEVPRRLMNPKRKTIGMRVPDNKIALDLLEALGEPLMS 142 Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 + G + + + + LI++GG +G + T V + ++I R G Sbjct: 143 TTLILPGNEMAESDPEAIRDQLEHAVDLIMNGGY--LGEQPTTVIDFSDDDIKIARVG 198 >gi|54309647|ref|YP_130667.1| putative translation factor [Photobacterium profundum SS9] gi|46914085|emb|CAG20865.1| putative translation factor [Photobacterium profundum SS9] Length = 206 Score = 39.7 bits (91), Expect = 0.63, Method: Compositional matrix adjust. Identities = 41/187 (21%), Positives = 75/187 (40%), Gaps = 6/187 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + G + PT++ Y L N A+ R+ +I++ + D+S + Sbjct: 17 MTQAVAIIRNGGVVVYPTDSGYALGCQLENKQALERICQIRRLNDKHNFTLLCRDLSEIA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKKLIE 129 +A VD + L + PG T + T ++ L + KT R+P L+E Sbjct: 77 NYARVDNAAFRLLRSNTPGAYTFIFK--GTKEVPRRLMSPKRKTIGIRIPNNAIALALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL S + + + + LI++GG +G + T V ++ Sbjct: 135 ELGEPLMSTSLILPNSDVAESDPEDIRDKLEHAVDLIMNGGY--LGEQPTTVIDFSNDEM 192 Query: 190 RILRPGG 196 +LR G Sbjct: 193 EVLRVGA 199 >gi|331007630|ref|ZP_08330772.1| Sua5 YciO YrdC YwlC family protein [gamma proteobacterium IMCC1989] gi|330418570|gb|EGG93094.1| Sua5 YciO YrdC YwlC family protein [gamma proteobacterium IMCC1989] Length = 189 Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust. Identities = 44/176 (25%), Positives = 72/176 (40%), Gaps = 13/176 (7%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK--- 71 A + G IA PTE V+GL N A+ R+ +K+R LI S I+ + Sbjct: 13 AARIMRQGGVIAYPTEAVWGLGCLPDNKDAVHRILSLKQRHVSKGLILVASSIAQFEPYL 72 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 +H +V+ + WPGP T ++ +T + + + RV + L Sbjct: 73 RHITVE--QRKTLENSWPGPFTWLVPHHNT--VPSWVSGKHSSIALRVSNHPHVRYLCNA 128 Query: 131 YGHPLAIPSANRSGQIS---ITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 G P+ SAN G+ + VK E+ I+ G + + STI ++ Sbjct: 129 VGGPIVSTSANPQGKPAPKQTWQVKRYFKHQ--PELDWIVSGCVGQRAEPSTITDL 182 >gi|297571292|ref|YP_003697066.1| Sua5/YciO/YrdC/YwlC family protein [Arcanobacterium haemolyticum DSM 20595] gi|296931639|gb|ADH92447.1| Sua5/YciO/YrdC/YwlC family protein [Arcanobacterium haemolyticum DSM 20595] Length = 208 Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 10/127 (7%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN--PLICHVSDISMVK 71 K + L G IA+PT++ Y + N + R+ I++ + L+CH D + + Sbjct: 19 KVVDRLRRGEVIAMPTDSGYAICCMMANKDGLERIRRIRQVGDKHHFTLLCH--DFAQLG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK--TACFRVPC-GFTKKLI 128 + VD L K PGP T +L T ++ P T N K T R+P T+ ++ Sbjct: 77 QLVIVDNAVFRLVKSLTPGPYTFILK--GTKEV-PRMTLNPKKATVGVRIPDHKITQAIV 133 Query: 129 ETYGHPL 135 T G PL Sbjct: 134 NTLGEPL 140 >gi|291059589|gb|ADD72324.1| putative YrdC domain protein [Treponema pallidum subsp. pallidum str. Chicago] Length = 212 Score = 39.7 bits (91), Expect = 0.66, Method: Compositional matrix adjust. Identities = 51/201 (25%), Positives = 81/201 (40%), Gaps = 32/201 (15%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN---------PLICHVSDISMVKKHAS 75 +A+PT+TVYG + P A+ L +K R P I ++D V + Sbjct: 24 VALPTDTVYGFS--GLVPHAVPDLICLKARGCTETEGNRREGYPFIALLADPQDVVVYTG 81 Query: 76 VD-PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133 P + WPGP T VL + + T FR P + + +I G Sbjct: 82 TRLPAEF---RALWPGPYTFVLRM-----------QDGATQAFRCPADLWLRSVIRAVGG 127 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 + SANR G+ + + + I K + L +D G G S ++++ R+LR Sbjct: 128 AIFSTSANRHGEPPLQDAQDI-DHIFGKHLALTVDAG-PLTGSPSAVIDLT-HPVPRVLR 184 Query: 194 PGG--LEIETLKRAISVELEY 212 G L + L+R S L + Sbjct: 185 AGAAPLPLAGLERRDSPSLPH 205 >gi|224417916|ref|ZP_03655922.1| Hydrogenase maturation protein HypF [Helicobacter canadensis MIT 98-5491] gi|313141457|ref|ZP_07803650.1| hydrogenase maturation protein HypF [Helicobacter canadensis MIT 98-5491] gi|313130488|gb|EFR48105.1| hydrogenase maturation protein HypF [Helicobacter canadensis MIT 98-5491] Length = 770 Score = 39.7 bits (91), Expect = 0.66, Method: Compositional matrix adjust. Identities = 56/207 (27%), Positives = 85/207 (41%), Gaps = 38/207 (18%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 ++ A + L G +A+ Y L D+ N +I+ L E K RP P +I M K Sbjct: 216 IKSALKALKEGKILALKGIGGYALICDATNANSIKALRERKNRPK-KPFALMCKNIQMAK 274 Query: 72 KHA------------SVDPLSLHLAKLFWPGPLTLVLDLLSTTD-IHPLSTANLKTACFR 118 +A S+ P+ L +K PL+L+ LST I P S Sbjct: 275 NYAYLNSQAIAMLNSSISPIVLSYSKTKANLPLSLIAPNLSTLGIILPYS---------- 324 Query: 119 VPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 G L + PL SAN SG+ I + S+ +++ + DG +S Sbjct: 325 ---GLHHLLFHSIDFPLVFTSANISGEPIIKDC-----YSVIQKLQNVCDGILS---YNR 373 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRA 205 I+N + VRIL G + + L+RA Sbjct: 374 DILNPIDDSLVRIL---GKKTQVLRRA 397 >gi|126208610|ref|YP_001053835.1| hypothetical protein APL_1140 [Actinobacillus pleuropneumoniae L20] gi|212277671|sp|A3N1E4|RIMN_ACTP2 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|126097402|gb|ABN74230.1| hypothetical protein APL_1140 [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 184 Score = 39.7 bits (91), Expect = 0.66, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 56/138 (40%), Gaps = 2/138 (1%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 N L E L +A PTE V+GL + N +A+R L ++KKRP LI + Sbjct: 2 NNLENIVEQLKRNRVVAYPTEAVFGLGCNPNNESAVRALLKLKKRPEEKGLILIAPTKEL 61 Query: 70 VKKHASVDPLSLHLAKLF-WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 + + + L+ ++F P + + + + T T R+ C L Sbjct: 62 LLPYIDENKLTAAHWQIFETPSERAITWVMPAKKAVPQYLTGQFDTIAVRLCCIPAVIDL 121 Query: 128 IETYGHPLAIPSANRSGQ 145 E G L S N +GQ Sbjct: 122 CERTGFALTSTSCNLTGQ 139 >gi|294670991|ref|ZP_06735847.1| hypothetical protein NEIELOOT_02697 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307478|gb|EFE48721.1| hypothetical protein NEIELOOT_02697 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 206 Score = 39.7 bits (91), Expect = 0.67, Method: Compositional matrix adjust. Identities = 42/174 (24%), Positives = 70/174 (40%), Gaps = 10/174 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E + G IA PT++ Y L + A+ R+ I++ + L +D+ + Sbjct: 17 IKQAAEIVRNGGVIAYPTDSCYALGCRLGDKEAMERILRIRQIDLKHHLTLMCADLGELG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDL---LSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 +A VD K PG T +L + +HP KT RVP L Sbjct: 77 TYAKVDNSQFRQLKAATPGSYTFILQATKEVPNRTLHP----KRKTIGLRVPDNKIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 + G PL + + + + + + L+IDGG G+E T V Sbjct: 133 LNELGEPLLSCTLMLPEDGEPLSDPYEIRDRLEHSVDLVIDGGWC--GMEPTTV 184 >gi|269138888|ref|YP_003295589.1| hypothetical protein ETAE_1537 [Edwardsiella tarda EIB202] gi|267984549|gb|ACY84378.1| hypothetical protein ETAE_1537 [Edwardsiella tarda EIB202] gi|304558874|gb|ADM41538.1| hypothetical protein ETAF_1426 [Edwardsiella tarda FL6-60] Length = 206 Score = 39.7 bits (91), Expect = 0.67, Method: Compositional matrix adjust. Identities = 41/171 (23%), Positives = 69/171 (40%), Gaps = 4/171 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++ E L G I PT++ Y L A+ R+ I++ + + D+S + Sbjct: 17 IKQVVEVLHKGGVIVYPTDSGYALGCMLEEKNAMERICRIRRIDSNHNFTLVCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 +A VD + L K PG T +L S L + KT RVP + L+ Sbjct: 77 SYAFVDNAAFRLLKNNTPGGYTFILK-ASKEVPRRLMSEKRKTIGLRVPSNPIAQDLLAE 135 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 G PL + + + + K++ L+I GG +G + T V Sbjct: 136 LGEPLMSTTLMLPDSEFAESDPEEIQERLGKQVDLVIHGGY--LGQQPTTV 184 >gi|253574246|ref|ZP_04851588.1| Sua5/YciO/YrdC/YwlC family protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251846723|gb|EES74729.1| Sua5/YciO/YrdC/YwlC family protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 80 Score = 39.7 bits (91), Expect = 0.67, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 33/57 (57%) Query: 266 SLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 +L+L + +L+ AA L+ ++ D+ G + I + P GLG A+ NRL +AA R Sbjct: 11 ALSLGREDELETAAHRLYAALRRFDECGVTYILAEACPEEGLGSAVMNRLLKAAGHR 67 >gi|153000435|ref|YP_001366116.1| (NiFe) hydrogenase maturation protein HypF [Shewanella baltica OS185] gi|151365053|gb|ABS08053.1| (NiFe) hydrogenase maturation protein HypF [Shewanella baltica OS185] Length = 838 Score = 39.7 bits (91), Expect = 0.67, Method: Compositional matrix adjust. Identities = 52/195 (26%), Positives = 85/195 (43%), Gaps = 13/195 (6%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 TD L+ A L G +AI + L D+RN A+ L K+R A PL ++D Sbjct: 263 TDLAVLKAAANRLHQGQILAIKGLGGFHLICDARNDKAVNTLRLRKQRQA-KPLAVMMAD 321 Query: 67 ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANL-KTACFRVPCGFT 124 I M + + + D L L+ P +++ + D+ P NL K F Sbjct: 322 IQMAQHYVTGTDAEWLVLSSQERP---IVLMSSRAEHDLSPAVAPNLNKLGVFLPYTPLH 378 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI-GLESTIV-- 181 L++ + PL SAN SG+ ITN ++ + + I+D I G + ++V Sbjct: 379 HLLLDLFKGPLVATSANVSGEPIITNCDELI-HHLSHVVDAIVDHNRPIINGCDDSVVQV 437 Query: 182 ---NVQCEKKVRILR 193 N+ +V++LR Sbjct: 438 IQPNMDSPAEVQVLR 452 >gi|294787792|ref|ZP_06753036.1| Sua5/YciO/YrdC/YwlC family protein [Simonsiella muelleri ATCC 29453] gi|294484085|gb|EFG31768.1| Sua5/YciO/YrdC/YwlC family protein [Simonsiella muelleri ATCC 29453] Length = 206 Score = 39.7 bits (91), Expect = 0.68, Method: Compositional matrix adjust. Identities = 48/193 (24%), Positives = 79/193 (40%), Gaps = 21/193 (10%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E ++ G + PT++ Y L + A+ R+ I++ + +D+S + Sbjct: 17 IKQAVETINKGGVVIYPTDSCYALGCRLGDKAAMERILAIRQMNLKHHFTLMCADLSELG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDL---LSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 +A VD K PG T +L + +HP KT RVP L Sbjct: 77 TYAKVDNSQFRQLKAATPGSYTFILQATKEVPNRTLHP----KRKTIGLRVPDNQIALAL 132 Query: 128 IETYGHP-----LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 ++ G P L +P N +T+ I + + LIIDGG G E T V Sbjct: 133 LKELGEPMLSCTLILPEDNE----PLTDPYEI-RDRLDYAVDLIIDGGWC--GTEPTTV- 184 Query: 183 VQCEKKVRILRPG 195 + V ++R G Sbjct: 185 IDMTDGVELVRQG 197 >gi|329122573|ref|ZP_08251154.1| SUA5/YciO/yrdC family domain protein [Haemophilus aegyptius ATCC 11116] gi|327473124|gb|EGF18550.1| SUA5/YciO/yrdC family domain protein [Haemophilus aegyptius ATCC 11116] Length = 183 Score = 39.7 bits (91), Expect = 0.68, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 8/126 (6%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83 +A PTE V+GL + ++ +A+++L ++K+RP LI + + + ++ L Sbjct: 16 VAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRPFVDFEQINDEQL 75 Query: 84 AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF--TKKLIETYGHPLAIPS 139 ++L + P T ++ STT H L T + R+ C K L E G L S Sbjct: 76 SRLQGKYERPTTWIVPAKSTTP-HFL-TGKFDSIAIRL-CDHPSVKALCEITGFALTSTS 132 Query: 140 ANRSGQ 145 AN +G+ Sbjct: 133 ANLTGE 138 >gi|186474345|ref|YP_001863316.1| (NiFe) hydrogenase maturation protein HypF [Burkholderia phymatum STM815] gi|184198304|gb|ACC76266.1| (NiFe) hydrogenase maturation protein HypF [Burkholderia phymatum STM815] Length = 791 Score = 39.7 bits (91), Expect = 0.68, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 1/53 (1%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR 54 +++S D +ALR A + L GL +A+ + + L VD+RNP A+ RL + K+R Sbjct: 212 RMLSAGD-DALRAAIDALRTGLTVAVKSVGGFHLVVDARNPDAVARLRDRKRR 263 >gi|29654232|ref|NP_819924.1| sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii RSA 493] gi|154706053|ref|YP_001424357.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii Dugway 5J108-111] gi|161829815|ref|YP_001596797.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii RSA 331] gi|29541498|gb|AAO90438.1| sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii RSA 493] gi|154355339|gb|ABS76801.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii Dugway 5J108-111] gi|161761682|gb|ABX77324.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii RSA 331] Length = 204 Score = 39.7 bits (91), Expect = 0.68, Method: Compositional matrix adjust. Identities = 45/191 (23%), Positives = 78/191 (40%), Gaps = 8/191 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E + G +A T++ Y L N + R+ +++ +P D+S + Sbjct: 16 IKQAVETVKTGGILAYSTDSGYALGCGLGNKSGAERIRRLRQLNKAHPFTLLCRDLSEIA 75 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVPCG-FTKKLI 128 +A + K PGP T + LS T P L KT RVP + ++ Sbjct: 76 VYARIANPVFRFLKAHTPGPYTFI---LSATRAVPRQLQHPKRKTIGIRVPDHRVIQAIL 132 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E PL + G+ + + ++ LI+D G+ G+E T V + + Sbjct: 133 EQLQEPLMNVTLIFPGEQWAPSEISEREDELAAQVDLIVDSGVC--GVEPTTVIDLVDGE 190 Query: 189 VRILRPGGLEI 199 ILR G +I Sbjct: 191 PTILREGKGDI 201 >gi|308447376|ref|XP_003087416.1| hypothetical protein CRE_14455 [Caenorhabditis remanei] gi|308256659|gb|EFP00612.1| hypothetical protein CRE_14455 [Caenorhabditis remanei] Length = 561 Score = 39.7 bits (91), Expect = 0.69, Method: Compositional matrix adjust. Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 1/72 (1%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ +A + L G +A PTE V+GL D N A + +K+RP +I +S Sbjct: 375 TTSVAEAAQILQQGKVLAYPTEAVWGLGCDPFNEQAFLEILRLKQRPIEKGVILLAGQLS 434 Query: 69 MVKK-HASVDPL 79 V+ +DP+ Sbjct: 435 QVEHLLTEIDPI 446 >gi|253827255|ref|ZP_04870140.1| transcriptional regulatory protein HypF [Helicobacter canadensis MIT 98-5491] gi|253510661|gb|EES89320.1| transcriptional regulatory protein HypF [Helicobacter canadensis MIT 98-5491] Length = 775 Score = 39.7 bits (91), Expect = 0.69, Method: Compositional matrix adjust. Identities = 56/207 (27%), Positives = 85/207 (41%), Gaps = 38/207 (18%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 ++ A + L G +A+ Y L D+ N +I+ L E K RP P +I M K Sbjct: 221 IKSALKALKEGKILALKGIGGYALICDATNANSIKALRERKNRPK-KPFALMCKNIQMAK 279 Query: 72 KHA------------SVDPLSLHLAKLFWPGPLTLVLDLLSTTD-IHPLSTANLKTACFR 118 +A S+ P+ L +K PL+L+ LST I P S Sbjct: 280 NYAYLNSQAIAMLNSSISPIVLSYSKTKANLPLSLIAPNLSTLGIILPYS---------- 329 Query: 119 VPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 G L + PL SAN SG+ I + S+ +++ + DG +S Sbjct: 330 ---GLHHLLFHSIDFPLVFTSANISGEPIIKDC-----YSVIQKLQNVCDGILS---YNR 378 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRA 205 I+N + VRIL G + + L+RA Sbjct: 379 DILNPIDDSLVRIL---GKKTQVLRRA 402 >gi|16272599|ref|NP_438816.1| hypothetical protein HI0656 [Haemophilus influenzae Rd KW20] gi|260581367|ref|ZP_05849182.1| trigger factor [Haemophilus influenzae RdAW] gi|1176855|sp|P44807|RIMN_HAEIN RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|1573655|gb|AAC22315.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20] gi|260091962|gb|EEW75910.1| trigger factor [Haemophilus influenzae RdAW] Length = 183 Score = 39.7 bits (91), Expect = 0.69, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 8/126 (6%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83 +A PTE V+GL + ++ +A+++L ++K+RP LI + + + ++ L Sbjct: 16 VAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRPFVDFEQINDEQL 75 Query: 84 AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF--TKKLIETYGHPLAIPS 139 ++L + P T ++ STT H L T + R+ C K L E G L S Sbjct: 76 SRLQGKYERPTTWIVPAKSTTP-HFL-TGKFDSIAIRL-CDHPSVKALCELTGFALTSTS 132 Query: 140 ANRSGQ 145 AN +G+ Sbjct: 133 ANLTGE 138 >gi|238919595|ref|YP_002933110.1| hypothetical protein NT01EI_1694 [Edwardsiella ictaluri 93-146] gi|238869164|gb|ACR68875.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 206 Score = 39.7 bits (91), Expect = 0.71, Method: Compositional matrix adjust. Identities = 44/185 (23%), Positives = 75/185 (40%), Gaps = 4/185 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++ E L G I PT++ Y L +A+ R+ I++ + + D+S + Sbjct: 17 IKQVVEVLHKGGVIVYPTDSGYALGCMLEEKSAMERICRIRRIDSNHNFTLVCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 +A V+ + L K PG T +L S L + KT RVP + L+ Sbjct: 77 SYAFVNNAAFRLLKNNTPGGYTFILK-ASKGVPRRLMSEKRKTIGLRVPSNPIARDLLAE 135 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G PL S + + + K++ L+I GG +G + T V E Sbjct: 136 LGEPLMSTSLMLPESEFTESDPEEIQERLGKQVDLVIHGGY--LGQQPTTVIDLTEDTPL 193 Query: 191 ILRPG 195 ++R G Sbjct: 194 VVRVG 198 >gi|148827835|ref|YP_001292588.1| hypothetical protein CGSHiGG_06565 [Haemophilus influenzae PittGG] gi|212277677|sp|A5UHE9|RIMN_HAEIG RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|148719077|gb|ABR00205.1| hypothetical protein CGSHiGG_06565 [Haemophilus influenzae PittGG] Length = 183 Score = 39.7 bits (91), Expect = 0.71, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 8/126 (6%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83 +A PTE V+GL + ++ +A+++L ++K+RP LI + + + ++ L Sbjct: 16 VAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRPFVDFEQINDEQL 75 Query: 84 AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF--TKKLIETYGHPLAIPS 139 ++L + P T ++ STT H L T + R+ C K L E G L S Sbjct: 76 SRLQGKYERPTTWIVPAKSTTP-HFL-TGKFDSIAVRL-CDHPSVKALCEITGFALTSTS 132 Query: 140 ANRSGQ 145 AN +G+ Sbjct: 133 ANLTGE 138 >gi|293390210|ref|ZP_06634544.1| SUA5 protein [Aggregatibacter actinomycetemcomitans D7S-1] gi|290950744|gb|EFE00863.1| SUA5 protein [Aggregatibacter actinomycetemcomitans D7S-1] Length = 207 Score = 39.7 bits (91), Expect = 0.72, Method: Compositional matrix adjust. Identities = 51/194 (26%), Positives = 87/194 (44%), Gaps = 21/194 (10%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E L G I PT++ Y L + A+ R+ I++ P + SD+S + Sbjct: 17 INQAVEILRNGGVIVYPTDSGYALGCMIGDKHAMDRIVHIRQLPEGHNFTLVCSDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 ++ V + L K PG T +L +T ++ L + KT RVP L++ Sbjct: 77 TYSLVTNSAYRLIKNNTPGRYTFILT--ATKELPRRLMASKRKTIGIRVPDNQIALDLLK 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSS-------ICKEIPLIIDGGISKIGLE-STIV 181 G P+ S + + N +H+ S + ++ LII GG +G E +T+V Sbjct: 135 ALGEPIL------SCSLMLPNEEHLTQSDPEEIRDRLEHQVDLIIHGGY--LGQEPTTVV 186 Query: 182 NVQCEKKVRILRPG 195 ++ + V ILR G Sbjct: 187 DLTGDTPV-ILREG 199 >gi|319775401|ref|YP_004137889.1| ribosome maturation factor SUA5/yciO/yrdC [Haemophilus influenzae F3047] gi|317449992|emb|CBY86204.1| predicted ribosome maturation factor SUA5/yciO/yrdC [Haemophilus influenzae F3047] Length = 183 Score = 39.3 bits (90), Expect = 0.73, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 8/126 (6%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83 +A PTE V+GL + ++ +A+++L ++K+RP LI + + + ++ L Sbjct: 16 VAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRPFVDFEQINDEQL 75 Query: 84 AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF--TKKLIETYGHPLAIPS 139 ++L + P T ++ STT H L T + R+ C K L E G L S Sbjct: 76 SRLQGKYERPTTWIVPAKSTTP-HFL-TGKFDSIAIRL-CDHPSVKALCELTGFALTSTS 132 Query: 140 ANRSGQ 145 AN +G+ Sbjct: 133 ANLTGE 138 >gi|288575494|ref|ZP_05977046.2| Sua5/YciO/YrdC/YwlC family protein [Neisseria mucosa ATCC 25996] gi|288567761|gb|EFC89321.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria mucosa ATCC 25996] Length = 227 Score = 39.3 bits (90), Expect = 0.74, Method: Compositional matrix adjust. Identities = 47/197 (23%), Positives = 80/197 (40%), Gaps = 21/197 (10%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A + + +G + PT++ Y L + A+ R+ I+K + L +D+S + Sbjct: 38 IKQATDIVRSGGVVVYPTDSCYALGCKLGDKAAMERILAIRKIDLKHHLTLMCADLSELG 97 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTT---DIHPLSTANLKTACFRVPCG-FTKKL 127 +A VD K PG T +L +HP KT RVP L Sbjct: 98 TYAKVDNAQFRQLKAATPGSYTFILQATKEVPNRTLHP----KRKTIGLRVPDNTIALSL 153 Query: 128 IETYGHP-----LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 ++ G P L +P + +T+ I + + L+IDGG G E T V Sbjct: 154 LQELGEPLLSCTLMLPEDDE----PLTDPYEI-RDRLEHAVDLVIDGGWC--GTEPTTV- 205 Query: 183 VQCEKKVRILRPGGLEI 199 + ++R G +I Sbjct: 206 IDMTDGTELIRQGKGDI 222 >gi|309751744|gb|ADO81728.1| tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein [Haemophilus influenzae R2866] Length = 183 Score = 39.3 bits (90), Expect = 0.74, Method: Compositional matrix adjust. Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 8/126 (6%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83 +A PTE V+GL + ++ +A+++L ++K+RP LI + + + ++ L Sbjct: 16 VAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRPFVDFELINDEQL 75 Query: 84 AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT--KKLIETYGHPLAIPS 139 ++L + P T ++ STT T + R+ C + K L E G L S Sbjct: 76 SRLQGKYERPTTWIVPAKSTTPY--FLTGKFDSIAVRL-CDHSSVKALCELVGFALTSTS 132 Query: 140 ANRSGQ 145 AN +G+ Sbjct: 133 ANLTGE 138 >gi|261856053|ref|YP_003263336.1| Sua5/YciO/YrdC/YwlC family protein [Halothiobacillus neapolitanus c2] gi|261836522|gb|ACX96289.1| Sua5/YciO/YrdC/YwlC family protein [Halothiobacillus neapolitanus c2] Length = 208 Score = 39.3 bits (90), Expect = 0.75, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 4/89 (4%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK--RPAMNPLICHVSDISMVK 71 + E L G I +PT++ Y LA + TA+ ++ +I++ P L+C D+S + Sbjct: 19 QIAEALSDGSVIVLPTDSGYTLACRLEDKTALAKIAQIRRDNEPHHMTLLCR--DLSEIS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLS 100 +A +D K PGP T +L+ S Sbjct: 77 TYAKLDNQHYRFLKTHTPGPYTFILEATS 105 >gi|68249235|ref|YP_248347.1| translation factor SUA5 [Haemophilus influenzae 86-028NP] gi|81336361|sp|Q4QMR0|RIMN_HAEI8 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|68057434|gb|AAX87687.1| predicted translation factor SUA5 [Haemophilus influenzae 86-028NP] Length = 183 Score = 39.3 bits (90), Expect = 0.77, Method: Compositional matrix adjust. Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 8/126 (6%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS---L 81 +A PTE V+GL + ++ +A+++L ++K+RP LI + + + ++ L Sbjct: 16 VAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRPFVDFEQINDEQL 75 Query: 82 HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF--TKKLIETYGHPLAIPS 139 + + P T ++ STT H L T + R+ C K L E G L S Sbjct: 76 SHLQGKYERPTTWIVPAKSTTS-HFL-TGKFDSIAIRL-CDHPSVKALCELTGFALTSTS 132 Query: 140 ANRSGQ 145 AN +G+ Sbjct: 133 ANLTGE 138 >gi|304389436|ref|ZP_07371399.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315656683|ref|ZP_07909570.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|304327246|gb|EFL94481.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315492638|gb|EFU82242.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 207 Score = 39.3 bits (90), Expect = 0.78, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 9/117 (7%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN--PLICHVSD 66 + +LR+ E + G +A PT++ Y L N + R+ +I++ + L+CH D Sbjct: 15 ARSLRQIVEIIQDGGIMAYPTDSGYALGCALANGAGLERIRKIRQLDDKHHFTLVCH--D 72 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK--TACFRVPC 121 S + + V L K PGP T +L T ++ P +T N K T R+P Sbjct: 73 FSQLGQLVMVSNSQYRLIKSLTPGPYTFILK--GTKEV-PRATLNKKKHTVGVRIPA 126 >gi|153206741|ref|ZP_01945582.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii 'MSU Goat Q177'] gi|165918501|ref|ZP_02218587.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii RSA 334] gi|212218383|ref|YP_002305170.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii CbuK_Q154] gi|120577104|gb|EAX33728.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii 'MSU Goat Q177'] gi|165917747|gb|EDR36351.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii RSA 334] gi|212012645|gb|ACJ20025.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii CbuK_Q154] Length = 204 Score = 39.3 bits (90), Expect = 0.78, Method: Compositional matrix adjust. Identities = 45/191 (23%), Positives = 78/191 (40%), Gaps = 8/191 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E + G +A T++ Y L N + R+ +++ +P D+S + Sbjct: 16 IKQAVETVKTGGILAYSTDSGYALGCRLGNKSGAERIRRLRQLNKAHPFTLLCRDLSEIA 75 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVPCG-FTKKLI 128 +A + K PGP T + LS T P L KT RVP + ++ Sbjct: 76 VYARIANPVFRFLKAHTPGPYTFI---LSATRAVPRQLQHPKRKTIGIRVPDHRVIQAIL 132 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E PL + G+ + + ++ LI+D G+ G+E T V + + Sbjct: 133 EQLQEPLMNVTLIFPGEQWAPSEISEREDELAAQVDLIVDSGVC--GVEPTTVIDLVDGE 190 Query: 189 VRILRPGGLEI 199 ILR G +I Sbjct: 191 PTILREGKGDI 201 >gi|118489827|gb|ABK96713.1| unknown [Populus trichocarpa x Populus deltoides] Length = 313 Score = 39.3 bits (90), Expect = 0.79, Method: Compositional matrix adjust. Identities = 32/102 (31%), Positives = 44/102 (43%), Gaps = 16/102 (15%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL--ICH- 63 +D+ L E L G IPT+TVY + D ++ +AI RL IK PL +CH Sbjct: 82 SDTWKLEPVIELLKQGAVGVIPTDTVYAIVCDLKSNSAIERLRRIKNIEPSKPLSILCHS 141 Query: 64 VSDISMV---------KKHASVDPLSLHLAKLFWPGPLTLVL 96 + DI + HA + K PGP T +L Sbjct: 142 LRDIDTYTTGFPRGDGQGHADI----FRAVKHCLPGPYTFIL 179 >gi|218961320|ref|YP_001741095.1| putative Protein-tyrosine-phosphatase [Candidatus Cloacamonas acidaminovorans] gi|167729977|emb|CAO80889.1| putative Protein-tyrosine-phosphatase [Candidatus Cloacamonas acidaminovorans] Length = 394 Score = 39.3 bits (90), Expect = 0.81, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 67/160 (41%), Gaps = 11/160 (6%) Query: 2 QIMSITDSNALRKACEFLDAGLP-----IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56 +IM + LRK +F+ A P I T +++G+ + I R+ +K+R Sbjct: 27 EIMLVLKDPGLRKLEKFI-ANNPLIHSTILHWTGSMWGIGCRLSSSETIARIETLKQRAD 85 Query: 57 MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 I + D+S++++ P+ L +WPG LTL+ + D Sbjct: 86 KQGFIALIPDMSVLEQDKIPAPIR-PLMNQYWPGNLTLIFNY---DDPQFAGIKRGNKVA 141 Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHIL 155 RVP + LI G PL S N SG + N + I+ Sbjct: 142 LRVPSDPALRALISLLGEPLISTSVNVSGLMPEENYERIV 181 >gi|319897809|ref|YP_004136006.1| ribosome maturation factor sua5/ycio/yrdc [Haemophilus influenzae F3031] gi|317433315|emb|CBY81691.1| predicted ribosome maturation factor SUA5/yciO/yrdC [Haemophilus influenzae F3031] Length = 183 Score = 39.3 bits (90), Expect = 0.83, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 8/126 (6%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83 +A PTE V+GL + ++ +A+++L ++K+RP LI + + + ++ L Sbjct: 16 VAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRPFVDFEQINDEQL 75 Query: 84 AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF--TKKLIETYGHPLAIPS 139 ++L + P T ++ STT H L T + R+ C K L E G L S Sbjct: 76 SRLQGKYERPTTWIVPAKSTTP-HFL-TGKFDSIAIRL-CDHPSVKALCELSGFALTSTS 132 Query: 140 ANRSGQ 145 AN +G+ Sbjct: 133 ANLTGE 138 >gi|307261622|ref|ZP_07543290.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306868745|gb|EFN00554.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 187 Score = 39.3 bits (90), Expect = 0.84, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 28/52 (53%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 N L E L +A PTE V+GL + N +A+R L ++KKRP LI Sbjct: 5 NNLENIVEQLKRNRVVAYPTEAVFGLGCNPNNESAVRALLKLKKRPEEKGLI 56 >gi|229845648|ref|ZP_04465773.1| predicted translation factor SUA5 [Haemophilus influenzae 6P18H1] gi|229811448|gb|EEP47152.1| predicted translation factor SUA5 [Haemophilus influenzae 6P18H1] Length = 183 Score = 39.3 bits (90), Expect = 0.84, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 8/126 (6%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83 +A PTE V+GL + ++ +A+++L ++K+RP LI + + + ++ L Sbjct: 16 VAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRPFVDFELINDEQL 75 Query: 84 AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF--TKKLIETYGHPLAIPS 139 ++L + P T ++ STT H L T + R+ C K L E G L S Sbjct: 76 SRLQGKYERPTTWIVPAKSTTS-HFL-TGKFDSIAVRL-CDHPSVKALCELTGFTLTSTS 132 Query: 140 ANRSGQ 145 AN +G+ Sbjct: 133 ANLTGE 138 >gi|298346859|ref|YP_003719546.1| RNA binding protein [Mobiluncus curtisii ATCC 43063] gi|315655404|ref|ZP_07908304.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus curtisii ATCC 51333] gi|298236920|gb|ADI68052.1| RNA binding protein [Mobiluncus curtisii ATCC 43063] gi|315490344|gb|EFU79969.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus curtisii ATCC 51333] Length = 207 Score = 39.3 bits (90), Expect = 0.85, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 9/117 (7%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN--PLICHVSD 66 + +LR+ E + G +A PT++ Y L N + R+ +I++ + L+CH D Sbjct: 15 ARSLRQIVEIIQDGGIMAYPTDSGYALGCALANGAGLERIRKIRQLDDKHHFTLVCH--D 72 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK--TACFRVPC 121 S + + V L K PGP T +L T ++ P +T N K T R+P Sbjct: 73 FSQLGQLVMVSNSQYRLIKSLTPGPYTFILK--GTKEV-PRATLNKKKHTVGVRIPA 126 >gi|226938986|ref|YP_002794057.1| SUA5/YciO/YrdC family protein [Laribacter hongkongensis HLHK9] gi|322967314|sp|C1D9T5|RIMN_LARHH RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|226713910|gb|ACO73048.1| probable SUA5/YciO/YrdC family protein [Laribacter hongkongensis HLHK9] Length = 185 Score = 39.3 bits (90), Expect = 0.85, Method: Compositional matrix adjust. Identities = 37/167 (22%), Positives = 69/167 (41%), Gaps = 5/167 (2%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-VDPLSLHL 83 +A TE+ +GL N +R + +K RP +I + +++ VD Sbjct: 23 LAYATESCFGLGCLPGNARGLRTILRLKGRPNHKGMIVVGRRFADLRRLVRPVDAAGQAR 82 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRS 143 WPGP T +L + + PL +T RV ++ PL SAN + Sbjct: 83 LMSRWPGPTTFLLP--ADRRVLPLLRGRHRTLAVRVSAHHGVAMLTRDLGPLVSTSANFA 140 Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G++S+ N + +E+ +++ G + S I++ + +R Sbjct: 141 GKVSLKNAAAC-RRTFGQEV-MVLPGRTGRARRPSAIIDFASGRVLR 185 >gi|145629659|ref|ZP_01785456.1| fructose 1,6-bisphosphatase II [Haemophilus influenzae 22.1-21] gi|144978170|gb|EDJ87943.1| fructose 1,6-bisphosphatase II [Haemophilus influenzae 22.1-21] Length = 183 Score = 39.3 bits (90), Expect = 0.85, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 8/126 (6%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83 +A PTE V+GL + ++ +A+++L ++K+RP LI + + + ++ L Sbjct: 16 VAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRPFVDFELINDEQL 75 Query: 84 AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF--TKKLIETYGHPLAIPS 139 ++L + P T ++ STT H L T + R+ C K L E G L S Sbjct: 76 SRLQGKYERPTTWIVPAKSTTS-HFL-TGKFDSIAVRL-CDHPSVKALCELTGFTLTSTS 132 Query: 140 ANRSGQ 145 AN +G+ Sbjct: 133 ANLTGE 138 >gi|225012824|ref|ZP_03703258.1| Sua5/YciO/YrdC/YwlC family protein [Flavobacteria bacterium MS024-2A] gi|225003098|gb|EEG41074.1| Sua5/YciO/YrdC/YwlC family protein [Flavobacteria bacterium MS024-2A] Length = 205 Score = 39.3 bits (90), Expect = 0.86, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 2/88 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSDISMV 70 + +A L+ G I PT+TVYGL S N + R +I+ + + PL DI + Sbjct: 17 IEEAARILNQGGLIIFPTDTVYGLGCLSNNKKGLSRFAKIRDVKIELAPLSFLFQDIREL 76 Query: 71 KKHAS-VDPLSLHLAKLFWPGPLTLVLD 97 + ++ + L K PGP L+++ Sbjct: 77 TNYVQHMNSTTFKLVKKLLPGPYALIMN 104 >gi|159572301|emb|CAP19076.1| yrdC domain containing (E.coli) [Mus musculus] Length = 103 Score = 39.3 bits (90), Expect = 0.86, Method: Composition-based stats. Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 17/102 (16%) Query: 103 DIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICK 161 D++P + + R+P F L + +G PLA+ SAN S Q S +V+ + Sbjct: 10 DLNPFT----RLVGIRIPDHAFMLDLAQMFGGPLALTSANLSSQASSLSVEEF--QDLWP 63 Query: 162 EIPLIIDGGISKIG--------LESTIVNVQCEKKVRILRPG 195 + L+IDGG IG L ST+V++ K I+RPG Sbjct: 64 HLSLVIDGG--PIGDSQSPECRLGSTVVDLSVPGKFGIIRPG 103 >gi|146329578|ref|YP_001209160.1| SUA5/yciO/yrdC domain-containing protein [Dichelobacter nodosus VCS1703A] gi|146233048|gb|ABQ14026.1| Sua5-YciO-YrdC-YwlC domain protein [Dichelobacter nodosus VCS1703A] Length = 208 Score = 39.3 bits (90), Expect = 0.86, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 6/81 (7%) Query: 19 LDAGLPIAIPTETVYGLA--VDSRNPTA-IRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75 LD G I P++T Y L +D++N + IRRL ++ L+C SD++ + +A Sbjct: 24 LDKGGVIVAPSDTGYALLCRLDAKNASVRIRRLRQLDDDHFFT-LLC--SDLTHLSHYAR 80 Query: 76 VDPLSLHLAKLFWPGPLTLVL 96 VD + L K +PG T +L Sbjct: 81 VDNVQFRLLKTLFPGAFTCIL 101 >gi|315637441|ref|ZP_07892652.1| hydrogenase maturation protein HypF [Arcobacter butzleri JV22] gi|315478231|gb|EFU68953.1| hydrogenase maturation protein HypF [Arcobacter butzleri JV22] Length = 748 Score = 39.3 bits (90), Expect = 0.87, Method: Compositional matrix adjust. Identities = 30/131 (22%), Positives = 55/131 (41%), Gaps = 2/131 (1%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 A+ + + G IA+ + + D+ N + +L EIK RP P S I+ + Sbjct: 203 AIEQTANLIKDGYIIAVKGMGGFHIVCDATNDKVVNKLREIKNRPN-KPFAVMFSSINSI 261 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130 K++ +++ + P+ LV ++T ++ K CF CG L + Sbjct: 262 KQYTNINYQEEEILTS-KEKPIVLVKKRINTNLSSYIAPNISKLGCFIANCGIHHLLFKY 320 Query: 131 YGHPLAIPSAN 141 +P+ SAN Sbjct: 321 LQNPIVATSAN 331 >gi|146280421|ref|YP_001170574.1| hypothetical protein PST_0024 [Pseudomonas stutzeri A1501] gi|212288217|sp|A4VFI1|RIMN_PSEU5 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|145568626|gb|ABP77732.1| conserved hypothetical protein [Pseudomonas stutzeri A1501] gi|327478637|gb|AEA81947.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166] Length = 185 Score = 39.3 bits (90), Expect = 0.87, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 13/140 (9%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++ + AG IA PTE V+G+ D + A+ RL +K+RP LI ++D Sbjct: 7 VQQVARVVRAGGVIAYPTEAVWGVGCDPWDEDAVLRLLALKERPVEKGLIL-IADTVEQF 65 Query: 72 KHASVDPLSLHLAKL--FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP--------C 121 D L +L WPGP T ++ + T + RV C Sbjct: 66 DFLLDDLPERWLDRLSGTWPGPNTWLVP--HRGRLPEWITGRHDSVALRVTDHPLVKRLC 123 Query: 122 GFTKKLIETYGHPLAIPSAN 141 T L+ T +P P+A Sbjct: 124 ALTGPLVSTSANPAGRPAAR 143 >gi|89892405|gb|ABD78986.1| HI0656-like protein [Haemophilus influenzae] Length = 183 Score = 39.3 bits (90), Expect = 0.91, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 8/126 (6%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83 +A PTE V+GL + ++ +A+++L ++K+RP LI + + + ++ L Sbjct: 16 VAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRPFVDFEQINDEQL 75 Query: 84 AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF--TKKLIETYGHPLAIPS 139 ++L + P T ++ STT H L T + R+ C K L E G L S Sbjct: 76 SRLQGKYERPTTWIVPSKSTTP-HFL-TGKFDSIAIRL-CDHPSVKALCELTGFTLTSTS 132 Query: 140 ANRSGQ 145 AN +G+ Sbjct: 133 ANLTGE 138 >gi|172035978|ref|YP_001802479.1| putative YrdC-like RNA-binding protein [Cyanothece sp. ATCC 51142] gi|171697432|gb|ACB50413.1| putative YrdC-like RNA-binding protein [Cyanothece sp. ATCC 51142] Length = 215 Score = 39.3 bits (90), Expect = 0.92, Method: Compositional matrix adjust. Identities = 48/192 (25%), Positives = 85/192 (44%), Gaps = 15/192 (7%) Query: 16 CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75 ++L+ G + +PT+TVY L V+ P AI +L +IKK PL ++ K Sbjct: 21 IDYLEQGEVVLLPTDTVYTLVVNGLKPKAIAKLRKIKKFGQDQPL----GILTRGNKAEE 76 Query: 76 VDPLSLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGH 133 V L+ ++ +P P+T+++ + ++ T P F L+E Sbjct: 77 VAILNTSAKRMISHFPYPITMIVQ--AHPQLNREITQGFSKIFLSCPDPFIYDLVEQIPF 134 Query: 134 PLAIPSANRSGQ--ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 PL +A G+ +S + IPLI+DGG S+ G T+++ E I Sbjct: 135 PLVSATAKVGGEPIVSFDAAQRYFRDI----IPLIVDGGRSRYGRRGTLIDFTVEYPT-I 189 Query: 192 LRPGGLEIETLK 203 + G + ++ L+ Sbjct: 190 MNFGPISVDDLR 201 >gi|90412190|ref|ZP_01220196.1| putative translation factor [Photobacterium profundum 3TCK] gi|90326914|gb|EAS43299.1| putative translation factor [Photobacterium profundum 3TCK] Length = 206 Score = 39.3 bits (90), Expect = 0.92, Method: Compositional matrix adjust. Identities = 41/187 (21%), Positives = 74/187 (39%), Gaps = 6/187 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + G + PT++ Y L N A+ R+ +I++ + D+S + Sbjct: 17 MTQAVAIIRNGGVVVYPTDSGYALGCQLENKQALERICQIRRLNDKHNFTLLCRDLSEIA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKKLIE 129 +A VD + L + PG T + T ++ L KT R+P L+E Sbjct: 77 NYARVDNAAFRLLRSNTPGAYTFIFK--GTKEVPRRLMNPKRKTIGIRIPDNAIALALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL S + + + + LI++GG +G + T V ++ Sbjct: 135 ELGEPLMSTSLILPNSDVAESDPEDIRDKLEHAVDLIMNGGY--LGEQPTTVIDFSNDEM 192 Query: 190 RILRPGG 196 +LR G Sbjct: 193 EVLRVGA 199 >gi|269140246|ref|YP_003296947.1| hydrogenase maturation protein [Edwardsiella tarda EIB202] gi|267985907|gb|ACY85736.1| hydrogenase maturation protein [Edwardsiella tarda EIB202] gi|304560076|gb|ADM42740.1| (NiFe) hydrogenase metallocenter assembly protein HypF [Edwardsiella tarda FL6-60] Length = 774 Score = 39.3 bits (90), Expect = 0.94, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 6/129 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 LDAG +A+ + LA D+ N AI RL E K+RP PL + D+S + ++ P Sbjct: 210 LDAGHIVAVKGLGGFHLACDAENDAAIARLRERKRRPG-KPLALMLPDLSWLARYCRTAP 268 Query: 79 LSLHLAKLFWP-GPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136 A L P P+ L+ +++ + P L +P L+ G PL Sbjct: 269 DDGLQALLSSPAAPIVLI---PASSAVPPRVAPGLDEVGVMLPSTPLHHLLMARIGRPLV 325 Query: 137 IPSANRSGQ 145 + S N +GQ Sbjct: 326 MTSGNANGQ 334 >gi|291614092|ref|YP_003524249.1| Sua5/YciO/YrdC/YwlC family protein [Sideroxydans lithotrophicus ES-1] gi|291584204|gb|ADE11862.1| Sua5/YciO/YrdC/YwlC family protein [Sideroxydans lithotrophicus ES-1] Length = 209 Score = 39.3 bits (90), Expect = 0.94, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 40/86 (46%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E L G I PT++ Y L + A+ R+ +I+ + L D+S + Sbjct: 17 IKQAAEMLRNGAVIVYPTDSGYALGCHLDDKDAVTRIRQIRGLDDKHFLTLMCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLD 97 +A VD L K PG T +L+ Sbjct: 77 HYARVDNAQFRLLKNNTPGSYTFILE 102 >gi|145639411|ref|ZP_01795016.1| predicted translation factor SUA5 [Haemophilus influenzae PittII] gi|145271458|gb|EDK11370.1| predicted translation factor SUA5 [Haemophilus influenzae PittII] Length = 183 Score = 38.9 bits (89), Expect = 0.98, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 8/126 (6%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83 +A PTE V+GL + ++ +A+++L ++K+RP LI + + + ++ L Sbjct: 16 VAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRPFVDFEKINDEQL 75 Query: 84 AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF--TKKLIETYGHPLAIPS 139 ++L + P T ++ STT H L T + R+ C K L E G L S Sbjct: 76 SRLQGKYERPTTWIVPSKSTTP-HFL-TGKFDSIAVRL-CDHPSVKALCELTGFALTSTS 132 Query: 140 ANRSGQ 145 AN +G+ Sbjct: 133 ANLTGE 138 >gi|304413778|ref|ZP_07395222.1| dsRNA-binding putative translation factor [Candidatus Regiella insecticola LSR1] gi|304283869|gb|EFL92263.1| dsRNA-binding putative translation factor [Candidatus Regiella insecticola LSR1] Length = 196 Score = 38.9 bits (89), Expect = 0.99, Method: Compositional matrix adjust. Identities = 39/162 (24%), Positives = 66/162 (40%), Gaps = 4/162 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 ++ + + L G I PT++ Y L A+ R+ I++ N D+S + Sbjct: 17 IKLSVDVLSKGGVIIYPTDSGYALGCRLEEKIAMDRICRIRQHNTTNHFTLVCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD + L K PG T +L +T ++ L KT RV L+ Sbjct: 77 TYAHVDNYAFKLIKNNIPGSYTFILR--ATKEVPRRLMNDKRKTIGLRVLTNPIALALMA 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171 PL + G + ++ ++ K++ LII GGI Sbjct: 135 LLKEPLMSTTLILQGNDRAESDPEVIKKNLSKQVDLIIHGGI 176 >gi|148826708|ref|YP_001291461.1| fructose 1,6-bisphosphatase II [Haemophilus influenzae PittEE] gi|212277676|sp|A5UE77|RIMN_HAEIE RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|148716868|gb|ABQ99078.1| fructose 1,6-bisphosphatase II [Haemophilus influenzae PittEE] Length = 183 Score = 38.9 bits (89), Expect = 0.99, Method: Compositional matrix adjust. Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 8/126 (6%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83 +A PTE V+GL + ++ +A+++L ++K+RP LI + + + ++ L Sbjct: 16 VAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRPFVDFEQINDEQL 75 Query: 84 AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF--TKKLIETYGHPLAIPS 139 ++L + P T ++ STT T + R+ C K L E G L S Sbjct: 76 SRLQGKYERPTTWIVPSKSTTPY--FLTGKFDSIAVRL-CDHPSVKALCELTGFALTSTS 132 Query: 140 ANRSGQ 145 AN +G+ Sbjct: 133 ANLTGE 138 >gi|295697076|ref|YP_003590314.1| (NiFe) hydrogenase maturation protein HypF [Bacillus tusciae DSM 2912] gi|295412678|gb|ADG07170.1| (NiFe) hydrogenase maturation protein HypF [Bacillus tusciae DSM 2912] Length = 756 Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D ALR+A L G +A+ Y LA D++N A+R L E K+R A P D+ Sbjct: 200 DEAALREAVHLLGRGAIVAVKGLGGYHLACDAKNAGAVRALRERKRRGA-KPFAVMAKDL 258 Query: 68 SMVKKHASVDP 78 ++ ++ + P Sbjct: 259 NVARELVDLSP 269 >gi|212212644|ref|YP_002303580.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii CbuG_Q212] gi|212011054|gb|ACJ18435.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii CbuG_Q212] Length = 204 Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust. Identities = 44/191 (23%), Positives = 78/191 (40%), Gaps = 8/191 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E + G +A T++ Y L N + R+ +++ +P D+S + Sbjct: 16 IKQAVETVKTGGILAYSTDSGYALGCGLGNKSGAERIRRLRQLNKAHPFTLLCRDLSEIA 75 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVPCG-FTKKLI 128 +A + K PGP T + LS T P L KT RVP + ++ Sbjct: 76 VYARIANPVFRFLKAHTPGPYTFI---LSATQAVPRQLQHPKRKTIGIRVPDHRVIQAIL 132 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E PL + G+ + + ++ LI+D G+ G+E T + + + Sbjct: 133 EQLQEPLMNVTLIFPGEQWAPSEISEREDELAAQVDLIVDSGVC--GVEPTTLIDLVDGE 190 Query: 189 VRILRPGGLEI 199 ILR G +I Sbjct: 191 PTILREGKGDI 201 >gi|126640266|ref|YP_001083250.1| putative Sua5/YciO/YrdC/YwlC family protein [Acinetobacter baumannii ATCC 17978] Length = 171 Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 27/47 (57%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +A PTE V+GL D N A +++ E+K+RP +I IS V+ Sbjct: 1 MAYPTEAVWGLGCDPFNEQAFQKILELKQRPIEKGVILLAGHISQVE 47 >gi|170078339|ref|YP_001734977.1| YrdC domain-containing protein [Synechococcus sp. PCC 7002] gi|169886008|gb|ACA99721.1| yrdC domain protein [Synechococcus sp. PCC 7002] Length = 211 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 40/173 (23%), Positives = 77/173 (44%), Gaps = 5/173 (2%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 A+ E LD G + I T+ VY L ++ NP A +++E+K PL ++ Sbjct: 10 QAIAPIIEQLDRGQVVVIHTDVVYLLIANALNPQATNQIHELKGWEPRKPLTLLLTP-PK 68 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129 V ++ + + L F P P++++L ++ TA P F L Sbjct: 69 VPEYGILSAEAQTLVNQF-PYPISVILP--HRNNLAEGVTAGHSEVFVSCPDQFIYDLAA 125 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 P+A +A+ ++ + K + +++ LIIDGG +K + +T+++ Sbjct: 126 QAPFPIAAGTASLGSEMRANDAK-TAEAFFGQQVSLIIDGGKAKERIRTTLID 177 >gi|240948328|ref|ZP_04752714.1| SUA5 protein, possible translation factor [Actinobacillus minor NM305] gi|240297367|gb|EER47908.1| SUA5 protein, possible translation factor [Actinobacillus minor NM305] Length = 184 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 31/56 (55%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80 +A PTE V+GL + + A++ L ++KKRP LI D+ +++ + LS Sbjct: 17 VAYPTEAVFGLGCNPNSEQAVKLLLDLKKRPEEKGLILIAHDVELLRPYIDESQLS 72 >gi|254362317|ref|ZP_04978429.1| possible translation factor [Mannheimia haemolytica PHL213] gi|261493259|ref|ZP_05989786.1| putative translation factor [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496498|ref|ZP_05992878.1| putative translation factor [Mannheimia haemolytica serotype A2 str. OVINE] gi|153093897|gb|EDN74825.1| possible translation factor [Mannheimia haemolytica PHL213] gi|261307701|gb|EEY09024.1| putative translation factor [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311109|gb|EEY12285.1| putative translation factor [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 184 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 40/172 (23%), Positives = 73/172 (42%), Gaps = 39/172 (22%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL--- 81 +A PTE V+GL + ++ A+R+L +K+RP LI SD+ + + +D + Sbjct: 17 VAYPTEAVFGLGCNPQSEKAVRKLLVLKQRPEEKGLILLASDLKYLLPY--IDEARMTEQ 74 Query: 82 ------HLAK--LFW--------PGPLT--------------LVLDLLSTTDIHPLST-A 110 H+ + + W P LT V+ L + + ST A Sbjct: 75 AWQRLSHIGEQAITWIVPVKNTVPSYLTGKFDSIAVRLCNVPAVVQLCEASGVALTSTSA 134 Query: 111 NLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKE 162 NL PC K++I+ +G + A+ G+ + + ++ I S I ++ Sbjct: 135 NLSG---EPPCRNAKEVIDQFGQDFPVLHADTLGRENPSEIRDIFSQQIFRQ 183 >gi|159462480|ref|XP_001689470.1| translation factor [Chlamydomonas reinhardtii] gi|158283458|gb|EDP09208.1| translation factor [Chlamydomonas reinhardtii] Length = 278 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 18/115 (15%) Query: 9 SNALR--KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 SNA R + + + AG IPT+T+ + D N A+ RLY +K+ A PL Sbjct: 69 SNAWRLDEVVQLIKAGGVGVIPTDTLPAIVCDLHNRDAVLRLYSVKEMDARKPLSILCPS 128 Query: 67 ISMVKKHASVDPLS-----LHLAKLFWPGPLTLVL-----------DLLSTTDIH 105 +S + + + P + ++A+ PGP T VL D +S +IH Sbjct: 129 LSTITTYTTGFPTTASANWFNVARRLLPGPYTFVLPATKNLPPQCIDFMSGKNIH 183 >gi|75907707|ref|YP_322003.1| SUA5/yciO/yrdC-like protein [Anabaena variabilis ATCC 29413] gi|75701432|gb|ABA21108.1| SUA5/yciO/yrdC-like protein [Anabaena variabilis ATCC 29413] Length = 194 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 51/185 (27%), Positives = 78/185 (42%), Gaps = 21/185 (11%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS----MVKKHASVDPLS 80 ++ PT+TV LA P ++ K+R PLI + V+ + Sbjct: 19 VSFPTDTVPALAT---LPEQAGLIFAAKQRSQDKPLILMAASAEDLWPYVEGSEQDQQIW 75 Query: 81 LHLAKLFWPGPLTLVLDLLSTTD--IHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIP 138 + +WPG LTLVL ++P+ + T RVP + I + PLA Sbjct: 76 EQVVSQYWPGALTLVLPASKRVPKVMNPI---DPTTIGIRVPKNAIAQKILSQTGPLATT 132 Query: 139 SANRSGQISITNVKHI---LSSSICKE-IPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194 SAN SGQ ++ + I S + E L ++G IGL ST+ E +ILR Sbjct: 133 SANFSGQPALLTMAEIDAQFPSVLTLESTALEMEG----IGLPSTVAKWTGENW-QILRQ 187 Query: 195 GGLEI 199 G + + Sbjct: 188 GAVSL 192 >gi|309973849|gb|ADO97050.1| tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein [Haemophilus influenzae R2846] Length = 183 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 8/126 (6%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83 +A PTE V+GL + ++ +A+++L ++K+RP LI + + + ++ L Sbjct: 16 VAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRPFVDFELINDEQL 75 Query: 84 AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF--TKKLIETYGHPLAIPS 139 ++L + P T ++ STT H L T + R+ C K L E G L S Sbjct: 76 SRLQGKYERPTTWIVPAKSTTP-HFL-TGKFDSIAIRL-CDHPSVKALCEITGFALTSTS 132 Query: 140 ANRSGQ 145 AN +G+ Sbjct: 133 ANLTGE 138 >gi|254500948|ref|ZP_05113099.1| (NiFe) hydrogenase maturation protein HypF [Labrenzia alexandrii DFL-11] gi|222437019|gb|EEE43698.1| (NiFe) hydrogenase maturation protein HypF [Labrenzia alexandrii DFL-11] Length = 773 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 29/73 (39%), Positives = 36/73 (49%), Gaps = 13/73 (17%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL----- 60 I ++ +R A L AG IA+ + LAVD+ N A+ RL E KKRP PL Sbjct: 199 IETADPIRWAASRLAAGEIIALKGLGGFHLAVDATNDAAVARLREKKKRP-HKPLAVMVR 257 Query: 61 -------ICHVSD 66 ICHVSD Sbjct: 258 DLEQARTICHVSD 270 >gi|119509689|ref|ZP_01628835.1| hypothetical protein N9414_21841 [Nodularia spumigena CCY9414] gi|119465708|gb|EAW46599.1| hypothetical protein N9414_21841 [Nodularia spumigena CCY9414] Length = 216 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 5/104 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L +G + PT+TVY + D +A+ R+ +IK+ PL +S V +A V Sbjct: 24 LSSGAVMLYPTDTVYAIGCDLNAKSAVERVRQIKQLANDKPLTFLCPSLSNVATYAFVSD 83 Query: 79 LSLHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVP 120 + + K PG T LL T + P + + KT RVP Sbjct: 84 TAYRIMKRLIPGSYTF---LLPATKLVPRLVQSPKRKTTGIRVP 124 >gi|47177028|ref|YP_015639.1| [Ni/Fe] hydrogenase maturation protein [Oligotropha carboxidovorans OM5] gi|47115419|emb|CAG28472.1| [NiFe] hydrogenase maturation protein HypF [Oligotropha carboxidovorans OM5] Length = 787 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77 +AI Y LA D+ +P A+ RL +K+R A P D+ MV+++ SVD Sbjct: 213 VAIKALGGYQLACDATDPDAVARLRGLKRREA-KPFALMARDLDMVRRYCSVD 264 >gi|253989544|ref|YP_003040900.1| hypothetical protein PAU_02064 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780994|emb|CAQ84156.1| conserved hypothetical protein [Photorhabdus asymbiotica] Length = 206 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 43/184 (23%), Positives = 75/184 (40%), Gaps = 6/184 (3%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 ++ + G + PT++ Y + + A+ R+ I++ + D+S + + Sbjct: 19 QSVDVFKNGGVVVYPTDSGYAIGCHLEDKDAMTRICRIRQLDNHHNFTLMCRDLSEISTY 78 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIETY 131 A VD + L K PG T + L +T ++ L KT RVP L+E Sbjct: 79 AYVDNSAFRLIKNNTPGNYTFI--LRATKEVPRRLMNDKRKTIGLRVPSNPIALALLEQV 136 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 G PL S G + + ++ K + LII GG +G + T V + + Sbjct: 137 GEPLMSTSLILPGNDFAESDPEEIKDNLGKLVDLIIHGGY--LGQQPTTVIDLTDDTPVV 194 Query: 192 LRPG 195 +R G Sbjct: 195 IRKG 198 >gi|229828577|ref|ZP_04454646.1| hypothetical protein GCWU000342_00641 [Shuttleworthia satelles DSM 14600] gi|229793171|gb|EEP29285.1| hypothetical protein GCWU000342_00641 [Shuttleworthia satelles DSM 14600] Length = 444 Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 3/94 (3%) Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 T G AI + + +I V+H L S + + L + G+ +G E +V E Sbjct: 71 TVGAERAIVCVKKEYKAAIQAVEHGLESGLYPHVSLHLLQGVYPMGDEVVLVY---EATG 127 Query: 190 RILRPGGLEIETLKRAISVELEYCVDETSTPQSP 223 R++RPGGL IE +VE Y V T ++P Sbjct: 128 RVIRPGGLPIEEGVIVFNVETMYNVSRALTQEAP 161 >gi|15639175|ref|NP_218621.1| hypothetical protein TP0182 [Treponema pallidum subsp. pallidum str. Nichols] gi|189025415|ref|YP_001933187.1| hypothetical protein TPASS_0182 [Treponema pallidum subsp. pallidum SS14] gi|3322447|gb|AAC65168.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum str. Nichols] gi|189017990|gb|ACD70608.1| hypothetical protein TPASS_0182 [Treponema pallidum subsp. pallidum SS14] Length = 259 Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust. Identities = 52/204 (25%), Positives = 82/204 (40%), Gaps = 38/204 (18%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN---------PLICHVSDISMVKKHAS 75 +A+PT+TVYG + P A+ L +K R P I ++D V + Sbjct: 71 VALPTDTVYGFS--GLVPHAVPDLICLKARGCTETEGNRREGYPFIALLADPQDVVVYTG 128 Query: 76 VD-PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133 P + WPGP T VL + + T FR P + + +I G Sbjct: 129 TRLPAEF---RALWPGPYTFVLRM-----------QDGATQAFRCPADLWLRSVIRAVGG 174 Query: 134 PLAIPSANRSGQISI---TNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 + SANR G+ + ++ HI K + L +D G G S ++++ R Sbjct: 175 AIFSTSANRHGEPPLQDAQDIDHIFG----KHLALTVDAG-PLTGSPSAVIDLT-HPVPR 228 Query: 191 ILRPGG--LEIETLKRAISVELEY 212 +LR G L + L+R S L + Sbjct: 229 VLRAGAAPLPLAGLERRDSPSLPH 252 >gi|284007497|emb|CBA72979.1| dsRNA-binding protein [Arsenophonus nasoniae] Length = 206 Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust. Identities = 50/189 (26%), Positives = 84/189 (44%), Gaps = 12/189 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVY--GLAVDSRNP-TAIRRLYEIKKRPAMNPLICHVSDIS 68 + + L+ G I PT++ Y G +D++N T I RL ++ R L+C ++S Sbjct: 17 ISQCVNILNKGGIIVYPTDSGYAIGCKLDNKNALTQICRLRQLDSRHNFT-LMCR--NLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKK 126 + ++A +D + K PG T +L +T ++ + KT R+P K Sbjct: 74 EIAEYAYLDNPVFRMIKNSTPGHYTFILR--ATKEVPRRIMNKKRKTIGIRLPSNPIAKD 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+ G PL S G + + S I +++ LII+GG + +ST V E Sbjct: 132 LLNGIGEPLLSTSLILPGDDFAQSSAEEIESLIGEQVDLIINGGY--LSEKSTTVVDLTE 189 Query: 187 KKVRILRPG 195 I+R G Sbjct: 190 STPNIIRVG 198 >gi|49081744|gb|AAT50272.1| PA0022 [synthetic construct] Length = 186 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 54/136 (39%), Gaps = 13/136 (9%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A + G IA PTE V+GL D N A+ RL +K RP I ++I + Sbjct: 10 AARVVREGGVIAYPTEAVWGLGCDPWNEDAVYRLLALKARPVEKGPIVVAANIHQLDFLL 69 Query: 75 SVDPLSLHLAKL--FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP--------CGFT 124 P + L +L WPGP T ++ + T + RV C T Sbjct: 70 EDLP-DVWLDRLAGTWPGPNTWLVP--HQERLPEWVTGVHDSVAVRVTDHPLVQELCHLT 126 Query: 125 KKLIETYGHPLAIPSA 140 LI T +P P+A Sbjct: 127 GPLISTSANPAGRPAA 142 >gi|256822097|ref|YP_003146060.1| Sua5/YciO/YrdC/YwlC family protein [Kangiella koreensis DSM 16069] gi|256795636|gb|ACV26292.1| Sua5/YciO/YrdC/YwlC family protein [Kangiella koreensis DSM 16069] Length = 207 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 40/165 (24%), Positives = 73/165 (44%), Gaps = 6/165 (3%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81 G + PT++ Y L + A+ R+ +I+ + D+S + +A VD + Sbjct: 27 GGVVVYPTDSGYALGCHIGDKKALDRIRQIRDLEKDHNFTLVCRDLSELAFYARVDNTAF 86 Query: 82 HLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPS 139 L K PGP T + L +T ++ + L KT RVP ++ ++E G P+ S Sbjct: 87 RLIKNNTPGPYTFI--LRATAEVPNRLKHPKKKTIGIRVPDNAISQAILEALGEPMMNTS 144 Query: 140 ANRSGQISITNVK-HILSSSICKEIPLIIDGGISKIGLESTIVNV 183 GQ + + + + + +IDGG E+T+V++ Sbjct: 145 LILPGQDEGEVLAPYEIFDELNGRVDAVIDGGYCG-HQETTVVDM 188 >gi|329118384|ref|ZP_08247090.1| translation factor RimN [Neisseria bacilliformis ATCC BAA-1200] gi|327465430|gb|EGF11709.1| translation factor RimN [Neisseria bacilliformis ATCC BAA-1200] Length = 187 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 40/157 (25%), Positives = 65/157 (41%), Gaps = 10/157 (6%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +I+S ++ L+ L G IA PTE+ YG+ R+ A++ L +K+RP +I Sbjct: 3 RILSAAETGRLK---NRLRRGGLIAYPTESCYGIGCLPRHAGALKSLVRLKRRPQHKGMI 59 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 V S+ + + PL A WP T +L + K A R Sbjct: 60 --VVGDSLSRLRPLLRPLFAADAAALDGIWPARQTFLLPAARNVPVLLRGRGRGKLA-VR 116 Query: 119 VPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154 VP + + G PL S NR+G+ + + + Sbjct: 117 VPAHAAARDVCYLLGTPLVSTSCNRAGKRPCRSAREV 153 >gi|325525441|gb|EGD03262.1| putative translation factor [Burkholderia sp. TJI49] Length = 116 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 20/115 (17%) Query: 221 QSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEA-- 278 ++ G LK+HYAPR+ + L P +AL V + E + S+ G+ +A Sbjct: 1 RASGTLKAHYAPRTPLAL-----LPFDALESLLAVAQADGERVALVARASRAGRWAQADG 55 Query: 279 -------------AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 A +L+ ++ D + + I +P IA+N+RL RAAA Sbjct: 56 VHFVAAPEDPQAYARDLYGILRTLDRAQVARILVEKLPETVEWIAVNDRLGRAAA 110 >gi|307546301|ref|YP_003898780.1| translation factor [Halomonas elongata DSM 2581] gi|307218325|emb|CBV43595.1| K07566 putative translation factor [Halomonas elongata DSM 2581] Length = 207 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 72/186 (38%), Gaps = 10/186 (5%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 +A + G IA PT++ Y L + AI R+ ++ + SD+S + + Sbjct: 19 QAVRIIRDGGVIAYPTDSGYALGCHLGDKKAIERIKWLRSLDDKHNFTLVCSDLSEIGTY 78 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKLIE 129 A VD L K PG T +L S +HP ++ RVP + L+ Sbjct: 79 AKVDNAVFRLLKAHTPGAYTFILQATSEVPRLLLHP----KRRSIGVRVPDHPIPRALLA 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL + G+ + + L+IDGG LE T V E Sbjct: 135 ELGEPLMSVTLIPVGEEQPMTEAEEIRERFGAHLDLVIDGGACH--LEPTSVIDLRELPP 192 Query: 190 RILRPG 195 +I+R G Sbjct: 193 QIVREG 198 >gi|149920237|ref|ZP_01908709.1| Sua5/YciO/YrdC/YwlC [Plesiocystis pacifica SIR-1] gi|149819003|gb|EDM78442.1| Sua5/YciO/YrdC/YwlC [Plesiocystis pacifica SIR-1] Length = 217 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 51/208 (24%), Positives = 90/208 (43%), Gaps = 17/208 (8%) Query: 1 MQIMSITDSNAL--RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58 +++ TD++AL R A + GL + +P Y + D N +A+ L K+R Sbjct: 4 IKLDDTTDTSALAQRLAATLEEGGL-VCLPCNGSYRIVADLTNTSAVLDLMVSKQRTRKA 62 Query: 59 PLICHVSDISMVKK-HASVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPLSTANLKT 114 P + + + +++ A++ + LA WP PLT+ + D L L K Sbjct: 63 PALVFIDSHARLEEIDAALPEPARVLADALWPKPLTIRVQLGDALPRKVKKELGGKKAKV 122 Query: 115 ACFRVP-CGFTKKLIETYGHPLAIPSANR---SGQISITNVKHILSSSICKEIPLIIDGG 170 RVP + G PL + SANR +G+ S V+ S + + +D G Sbjct: 123 G-VRVPADALARATAAALGRPLLVSSANRQKKAGESSPAQVRR----SFGARVDIFVDAG 177 Query: 171 ISKIGLESTIVNVQCEKKVRILRPGGLE 198 + ST++++ + + I R G +E Sbjct: 178 DIQKKSASTVIDI-VDGALSIERQGTVE 204 >gi|146328766|ref|YP_001209262.1| hypothetical protein DNO_0343 [Dichelobacter nodosus VCS1703A] gi|322967307|sp|A5EW39|RIMN_DICNV RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|146232236|gb|ABQ13214.1| conserved hypothetical protein [Dichelobacter nodosus VCS1703A] Length = 190 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 43/172 (25%), Positives = 70/172 (40%), Gaps = 6/172 (3%) Query: 21 AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80 AG A PTE VYGL + + A+ + +K R A LI + + S Sbjct: 22 AGGVFAYPTEAVYGLGGNPADERAVCEILRLKGRTAAKGLIMVAGNWAQCCGWVSGVSKR 81 Query: 81 LHLAKLFWPG--PLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIP 138 + W G P T ++ H ++TA+ KTA ++L G PL Sbjct: 82 DQAEMMDWAGDYPTTFIVYAGEKLCAH-VATADGKTAIRISQHPLIQELCALIGQPLLST 140 Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 SAN SGQ +V + ++P+++ G + S I++ + +R Sbjct: 141 SANLSGQEPARSVAAV--RQYFPDLPMVL-GALGAAERPSRIIDWHSRQVIR 189 >gi|317010330|gb|ADU84077.1| transcriptional regulatory protein HypF [Helicobacter pylori SouthAfrica7] Length = 757 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 1/76 (1%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 + D +AL + + + G IA+ + L D+RN I RL +K RP + P Sbjct: 195 QLNDGDALLECAKDIQKGKIIALKGLGGFALVCDARNFQTIERLRLLKNRP-LKPFALMF 253 Query: 65 SDISMVKKHASVDPLS 80 D++ K+HA ++ L Sbjct: 254 KDLNTAKQHAFLNELE 269 >gi|33152183|ref|NP_873536.1| hypothetical protein HD1051 [Haemophilus ducreyi 35000HP] gi|33148405|gb|AAP95925.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP] Length = 205 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 52/125 (41%), Gaps = 3/125 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E + G I PT++ Y L A+ R+ I+K P + SD++ + Sbjct: 17 INQAVEIIKNGGVIIYPTDSGYALGCAIGEKHAMDRIVAIRKLPENHNFTLVCSDLAELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 +A V S L K P P T +L +T D+ KT RVP LI Sbjct: 77 TYALVTNQSYRLIKNNTPNPYTFILP--ATKDVPRRLMTKRKTIGIRVPNNTIALALISA 134 Query: 131 YGHPL 135 G P+ Sbjct: 135 LGEPI 139 >gi|294648882|ref|ZP_06726338.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter haemolyticus ATCC 19194] gi|292825273|gb|EFF84020.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter haemolyticus ATCC 19194] Length = 189 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 26/47 (55%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP 55 ++++ A + L G +A PTE V+GL D N A + + E K RP Sbjct: 3 TSSVADAAQLLKQGQVLAYPTEAVWGLGCDPFNEQAFQNVLECKHRP 49 >gi|226952179|ref|ZP_03822643.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter sp. ATCC 27244] gi|226837017|gb|EEH69400.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter sp. ATCC 27244] Length = 189 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 26/47 (55%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP 55 ++++ A + L G +A PTE V+GL D N A + + E K RP Sbjct: 3 TSSVADAAQLLKQGQVLAYPTEAVWGLGCDPFNEQAFQNVLECKHRP 49 >gi|114332006|ref|YP_748228.1| Sua5/YciO/YrdC/YwlC family protein [Nitrosomonas eutropha C91] gi|114309020|gb|ABI60263.1| Sua5/YciO/YrdC/YwlC family protein [Nitrosomonas eutropha C91] Length = 210 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 23/85 (27%), Positives = 38/85 (44%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +R+A + + G I PT++ Y L N A+ R+ I+K + D++ + Sbjct: 17 IRQAADIVREGGIIVYPTDSCYALGCQIGNKEAMDRIRTIRKVGQDHNFTLVCRDLAEIA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVL 96 +A VD L K PG T +L Sbjct: 77 TYAKVDNAQYRLLKATTPGSYTFIL 101 >gi|254361757|ref|ZP_04977892.1| possible RNA-binding protein [Mannheimia haemolytica PHL213] gi|153093292|gb|EDN74288.1| possible RNA-binding protein [Mannheimia haemolytica PHL213] Length = 205 Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 3/125 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E + G I PT++ Y L + A+ R+ I+K P + SD+S + Sbjct: 17 INQAVEIIRNGGVIVYPTDSGYALGCAMGDKHAMDRIVAIRKLPENHNFTLVCSDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130 +A V+ + L K P P T +L +T ++ KT RVP LI Sbjct: 77 IYALVNNQAYRLIKNNTPNPYTFILP--ATKELPRRLMTKRKTVGIRVPDNAIALALISA 134 Query: 131 YGHPL 135 G P+ Sbjct: 135 LGEPI 139 >gi|307151374|ref|YP_003886758.1| SUA5/yciO/yrdC domain-containing protein [Cyanothece sp. PCC 7822] gi|306981602|gb|ADN13483.1| SUA5/yciO/yrdC domain protein [Cyanothece sp. PCC 7822] Length = 193 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 8/138 (5%) Query: 21 AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80 AG ++ PT+TV LA P+ ++ K+RP PLI + + + + S Sbjct: 15 AGKVVSFPTDTVPALAA---LPSYSGLIFVAKQRPQDKPLILMGASLEDLWPYVSGTAKE 71 Query: 81 L----HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLA 136 L L + + PG LTLVL + ++ + T RVP ++I + PLA Sbjct: 72 LDIWQELGQKYLPGALTLVLPASEKIPVA-MNPTDPTTIGIRVPKHQVAQMILSKTGPLA 130 Query: 137 IPSANRSGQISITNVKHI 154 SAN SG+ ++ ++ I Sbjct: 131 TTSANLSGEPALLSMNKI 148 >gi|294635973|ref|ZP_06714415.1| Sua5/YciO/YrdC/YwlC family protein [Edwardsiella tarda ATCC 23685] gi|291090702|gb|EFE23263.1| Sua5/YciO/YrdC/YwlC family protein [Edwardsiella tarda ATCC 23685] Length = 206 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 42/185 (22%), Positives = 74/185 (40%), Gaps = 4/185 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++ + L G I PT++ Y L A+ R+ I++ + + D+S + Sbjct: 17 IKQVVDILRKGGVIVYPTDSGYALGCMLEEKNAMERICRIRRIDSNHNFTLVCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 +A VD + L K PG T +L S L + KT RVP + L+ Sbjct: 77 SYAFVDNAAFRLLKNNTPGGYTFILK-ASKEVPRRLMSEKRKTIGLRVPSNPIAQDLLAE 135 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G PL + + + + K + L+I GG +G + T V + + Sbjct: 136 LGEPLMSTTLMLPDSEFAESDPEEIQERLGKLVDLVIHGGY--LGQQPTTVIDMTDDNPQ 193 Query: 191 ILRPG 195 ++R G Sbjct: 194 VVRVG 198 >gi|34541326|ref|NP_905805.1| Sua5/YciO/YrdC/YwlC family protein [Porphyromonas gingivalis W83] gi|34397642|gb|AAQ66704.1| Sua5/YciO/YrdC/YwlC family protein [Porphyromonas gingivalis W83] Length = 200 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 51/189 (26%), Positives = 74/189 (39%), Gaps = 10/189 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSDISMV 70 L +A L G I PTE Y D+ ++ R+ E+K P L SD+SM Sbjct: 15 LERAVSALRDGKVIIYPTEVGYAYGCDALQNRSVERICELKGVDPRRKSLSIMCSDMSMA 74 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 ++ +D + K T VL S+ P N K R+ T+ L E Sbjct: 75 AEYCRIDNEAFRYMKDNHMQKYTFVLPAGSSL---PKVFKNRKQVGIRLALHPLTRLLAE 131 Query: 130 TYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE-K 187 + G PL S + + ++ + +++DGGI I E T V V C Sbjct: 132 SLGSPLLTGSLPLDPETPEYASDPELIEERYGLTVEMVLDGGI--IPFEQTTV-VDCTVS 188 Query: 188 KVRILRPGG 196 ILR GG Sbjct: 189 PYTILREGG 197 >gi|226326234|ref|ZP_03801752.1| hypothetical protein PROPEN_00076 [Proteus penneri ATCC 35198] gi|225205312|gb|EEG87666.1| hypothetical protein PROPEN_00076 [Proteus penneri ATCC 35198] Length = 449 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 1/65 (1%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 T +AL +ACE L AG IA+ + L D+RN ++ L E K RPA PL ++ Sbjct: 189 TKEHALTQACEALLAGKIIAVKGIGGFHLVCDARNNESVALLRERKYRPA-KPLAVMITG 247 Query: 67 ISMVK 71 I +K Sbjct: 248 IDQIK 252 >gi|261494041|ref|ZP_05990544.1| putative RNA-binding protein [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496198|ref|ZP_05992604.1| putative RNA-binding protein [Mannheimia haemolytica serotype A2 str. OVINE] gi|261308150|gb|EEY09447.1| putative RNA-binding protein [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310207|gb|EEY11407.1| putative RNA-binding protein [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 205 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 3/125 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E + G I PT++ Y L + A+ R+ I+K P + SD+S + Sbjct: 17 INQAVEIIRNGGVIVYPTDSGYALGCAMGDKHAMDRIVAIRKLPENHNFTLVCSDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130 +A V+ + L K P P T +L +T ++ KT RVP LI Sbjct: 77 IYALVNNQAYRLIKNNTPNPYTFILP--ATKELPRRLMTKRKTVGIRVPDNAIALALISA 134 Query: 131 YGHPL 135 G P+ Sbjct: 135 LGEPI 139 >gi|289808082|ref|ZP_06538711.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 77 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 27/49 (55%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 IA PTE V+G+ D + TA+ RL +K+RP LI + +K + Sbjct: 23 IAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIAASFEQLKPY 71 >gi|294634811|ref|ZP_06713335.1| [NiFe] hydrogenase maturation protein HypF [Edwardsiella tarda ATCC 23685] gi|291091779|gb|EFE24340.1| [NiFe] hydrogenase maturation protein HypF [Edwardsiella tarda ATCC 23685] Length = 774 Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 61/140 (43%), Gaps = 8/140 (5%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 A + C+ L++G +AI + LA D+ + AI RL K+RPA PL + I Sbjct: 200 EEAWQAVCQVLESGGIVAIKGLGGFHLACDASDAAAIARLRTRKQRPA-KPLALMLPGID 258 Query: 69 MVKKHASVDPLSLHLAKLFWP-GPLTLVLDLLSTTDIHPLSTA-NLKTACFRVPCG-FTK 125 + ++ P + +A L P P+ L+ +D P A L +P Sbjct: 259 WLARYCRTTPEAGLVALLNSPAAPIVLI----PASDAVPTGVAPGLDEVGVMLPSTPLHH 314 Query: 126 KLIETYGHPLAIPSANRSGQ 145 L+ G PL + S N SGQ Sbjct: 315 LLLARLGRPLVMTSGNASGQ 334 >gi|293390830|ref|ZP_06635164.1| protein YrdC [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951364|gb|EFE01483.1| protein YrdC [Aggregatibacter actinomycetemcomitans D7S-1] Length = 183 Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 55/125 (44%), Gaps = 6/125 (4%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83 +A PTE V+GL + + +A+ L +K+RP LI + + PL+ LH Sbjct: 16 VAYPTEAVFGLGCNPNSQSAMENLLVLKQRPVSKGLILIAPALDFLLPFIDERPLAELHW 75 Query: 84 AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI-ETYGHPLAIPSA 140 +L + P T V+ TT T + + R+ KL+ E G L SA Sbjct: 76 QRLTAQYARPTTWVVPAKKTTP--KFLTGDFDSIAVRISQHPAVKLLCEQAGFALTSTSA 133 Query: 141 NRSGQ 145 N SGQ Sbjct: 134 NLSGQ 138 >gi|225451447|ref|XP_002273946.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|296082345|emb|CBI21350.3| unnamed protein product [Vitis vinifera] Length = 306 Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust. Identities = 30/100 (30%), Positives = 41/100 (41%), Gaps = 8/100 (8%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 S TDS L + L G IPT+TVY + R+ +AI RL IK A PL Sbjct: 72 SGTDSWKLEPVADLLKEGAVGVIPTDTVYAIVCHLRSHSAIERLRRIKDIEASKPLSILC 131 Query: 65 SDISMVKKHASVDPLSL--------HLAKLFWPGPLTLVL 96 + + + + P + K PGP T +L Sbjct: 132 RSLRDIDTYTTGFPCGIGQGQTNIFRAVKHCLPGPYTFIL 171 >gi|269219483|ref|ZP_06163337.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 848 str. F0332] gi|269211062|gb|EEZ77402.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 848 str. F0332] Length = 205 Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 9/111 (8%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN--PLICHVSDISMVK 71 K E + +G IA PT++ Y L N + R+ I++ + L+CH D + + Sbjct: 19 KVVEHIRSGEVIAFPTDSGYALGCSLGNKEGLERIRSIRQVGDKHHFTLLCH--DFAQLG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK--TACFRVP 120 + A V L K PGP T +L T D+ P + N K T R+P Sbjct: 77 QLAIVGNSEFRLIKSLTPGPYTFILK--GTKDV-PRISVNPKKHTVGARIP 124 >gi|253699760|ref|YP_003020949.1| (NiFe) hydrogenase maturation protein HypF [Geobacter sp. M21] gi|251774610|gb|ACT17191.1| (NiFe) hydrogenase maturation protein HypF [Geobacter sp. M21] Length = 758 Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust. Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 1/75 (1%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +AL+ E L G +A+ Y LAVD+ N A+ RL + KKR P +D+ Sbjct: 201 GDALQLTLEALAQGKIVAVKGVGGYHLAVDAANQAALERLRQRKKRDE-KPFAMLAADLD 259 Query: 69 MVKKHASVDPLSLHL 83 V++HA L L Sbjct: 260 AVRRHAHCSELEGRL 274 >gi|293192668|ref|ZP_06609622.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces odontolyticus F0309] gi|292820175|gb|EFF79172.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces odontolyticus F0309] Length = 205 Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust. Identities = 38/159 (23%), Positives = 68/159 (42%), Gaps = 10/159 (6%) Query: 16 CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN--PLICHVSDISMVKKH 73 + L+ G IA+PT++ Y +A + N + + I+K + L+CH + + + Sbjct: 20 VDLLERGGTIALPTDSGYAIATKAGNKAGMDTIRAIRKLDDKHNFSLLCH--SFAQLGEL 77 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK--TACFRVPCG-FTKKLIET 130 +D K PGP T + L T ++ P N K T R+P T+ ++E Sbjct: 78 VIIDNHEFRTMKALTPGPYTFI--LRGTKEV-PRIMLNKKKHTVGVRIPDHVITQAIVEA 134 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169 G PLA + G+ + I ++ L++ G Sbjct: 135 LGEPLACSTLIMPGEEEPLTDGFDVDDRIGHQVDLVVVG 173 >gi|188994286|ref|YP_001928538.1| hypothetical protein PGN_0422 [Porphyromonas gingivalis ATCC 33277] gi|188593966|dbj|BAG32941.1| conserved hypothetical protein [Porphyromonas gingivalis ATCC 33277] Length = 200 Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust. Identities = 51/189 (26%), Positives = 74/189 (39%), Gaps = 10/189 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSDISMV 70 L +A L G I PTE Y D+ ++ R+ E+K P L SD+SM Sbjct: 15 LERAVSALRDGKVIIYPTEVGYAYGCDALQNRSVERICELKGVDPRRKNLSIMCSDMSMA 74 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 ++ +D + K T VL S+ P N K R+ T+ L E Sbjct: 75 AEYCRIDNEAFRYMKDNHMQKYTFVLPAGSSL---PKVFKNRKQVGIRLALHPLTRLLAE 131 Query: 130 TYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE-K 187 + G PL S + + ++ + +++DGGI I E T V V C Sbjct: 132 SLGSPLLTGSLPLDPETPEYASDPELIEERYGLTVEMVLDGGI--IPFEQTTV-VDCTVS 188 Query: 188 KVRILRPGG 196 ILR GG Sbjct: 189 PYTILREGG 197 >gi|320161188|ref|YP_004174412.1| hydrogenase maturation protein HypF [Anaerolinea thermophila UNI-1] gi|319995041|dbj|BAJ63812.1| hydrogenase maturation protein HypF [Anaerolinea thermophila UNI-1] Length = 765 Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 AL+KA + L G +AI + LA D+ N TA++ L KKR + P V D+S Sbjct: 204 EEALQKARQLLKEGAILAIKGLGGFHLACDAANETAVKTLRNRKKR-SDKPFAVMVFDLS 262 Query: 69 MVKKHASVD 77 V+K A D Sbjct: 263 KVEKIAEFD 271 >gi|24373654|ref|NP_717697.1| hydrogenase maturation protein HypF [Shewanella oneidensis MR-1] gi|24347998|gb|AAN55141.1|AE015650_11 hydrogenase maturation protein HypF [Shewanella oneidensis MR-1] Length = 808 Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 62/146 (42%), Gaps = 4/146 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L A L G +AI + L D+RN A+ +L + K+R A PL + I M K Sbjct: 222 LSAAANMLAQGHILAIKGLGGFHLMCDARNSHAVSQLRQRKQRKA-KPLAVMMPSIEMAK 280 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANL-KTACFRVPCGFTKKLIET 130 ++ V L P +++ L D++P N+ K F L+ Sbjct: 281 QY--VTGTEAEWQTLSSPERPIVLMQALDEHDLNPEIAPNIPKLGVFLPYTPLHHLLLSQ 338 Query: 131 YGHPLAIPSANRSGQISITNVKHILS 156 + PL SAN SG+ IT+ ++S Sbjct: 339 FNGPLVATSANVSGEPIITDCDALIS 364 >gi|119469322|ref|ZP_01612261.1| putative RNA binding protein with YrdC/RibB domain [Alteromonadales bacterium TW-7] gi|119447186|gb|EAW28455.1| putative RNA binding protein with YrdC/RibB domain [Alteromonadales bacterium TW-7] Length = 206 Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust. Identities = 48/190 (25%), Positives = 75/190 (39%), Gaps = 14/190 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + + G + PT++ Y + + N A R+ I+ + D+S + Sbjct: 17 ITQAVDIIKQGGVVVYPTDSGYAIGCNIGNKQAKERIERIRGIDKNDNFTLVCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRV-----PCGFTK 125 +A VD L K PGP T + T ++ L KT RV C Sbjct: 77 TYARVDNQLFRLIKNNTPGPYTFIFK--GTKEVPKRLLNDKKKTIGIRVIEHPIACALLA 134 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +L G PL S GQ + + + K + LII GG + ++T V Sbjct: 135 EL----GEPLMSCSLILPGQEFTESDPDEILDRLDKHVDLIIHGGY--LPEQATTVIDLS 188 Query: 186 EKKVRILRPG 195 E V+ILR G Sbjct: 189 EDDVKILRVG 198 >gi|84496393|ref|ZP_00995247.1| hypothetical protein JNB_02700 [Janibacter sp. HTCC2649] gi|84383161|gb|EAP99042.1| hypothetical protein JNB_02700 [Janibacter sp. HTCC2649] Length = 207 Score = 37.4 bits (85), Expect = 2.8, Method: Compositional matrix adjust. Identities = 43/189 (22%), Positives = 73/189 (38%), Gaps = 10/189 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 ++++A + L G IA PT++ Y L N +A R+ +I+K + +D + + Sbjct: 16 SIKQAVDTLREGGLIAYPTDSGYALGAALGNQSAKDRIRDIRKLDDKHHYTLVCADFAQL 75 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKK 126 VD K PGP T +L +HP KT R+P + Sbjct: 76 GHFVHVDNAVFRAVKASTPGPYTFILPATGEVPRRVLHP----KKKTVGVRIPEHPVVQA 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+ G P+ + G+ + + + ++ID G + G E T V Sbjct: 132 LLAELGEPMLTSTLILPGETEPMTDGWQVKEELDHVVDVVIDSG--ECGTEPTTVIDLSG 189 Query: 187 KKVRILRPG 195 +LR G Sbjct: 190 DVAEVLRVG 198 >gi|114777136|ref|ZP_01452156.1| Sua5/YciO/YrdC/YwlC [Mariprofundus ferrooxydans PV-1] gi|114552657|gb|EAU55117.1| Sua5/YciO/YrdC/YwlC [Mariprofundus ferrooxydans PV-1] Length = 205 Score = 37.4 bits (85), Expect = 2.8, Method: Compositional matrix adjust. Identities = 22/85 (25%), Positives = 41/85 (48%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +R+A + L GL +A+PT+T Y L A+ + ++++ + +D+SM Sbjct: 19 VRRAADLLRQGLFVAVPTDTTYALMCRPDATDAVAAIRQLRRLDDSHLWAVACADLSMAS 78 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVL 96 +D + + K PGP T +L Sbjct: 79 ACVRMDNHAHRILKRCLPGPYTFIL 103 >gi|242239361|ref|YP_002987542.1| Sua5/YciO/YrdC/YwlC family protein [Dickeya dadantii Ech703] gi|242131418|gb|ACS85720.1| Sua5/YciO/YrdC/YwlC family protein [Dickeya dadantii Ech703] Length = 206 Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust. Identities = 43/188 (22%), Positives = 78/188 (41%), Gaps = 6/188 (3%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 ++ + L G I PT++ Y L + TA+ R+ I+ + D+S + + Sbjct: 19 QSVDILRKGGVIVYPTDSGYALGCMLEDKTAMERICRIRNLDQHHNFTLMCRDLSELSSY 78 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIETY 131 A VD + L K PG T +L +T ++ L KT RVP +L+ Sbjct: 79 AYVDNAAFRLIKNNTPGNYTFILK--ATKEVPRRLMNDKRKTIGMRVPSNPIALELLAAL 136 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 P+ + G + + + K++ L+I GG +G + T V E ++ Sbjct: 137 NAPMMSTTLMLPGNDFAESDPEEIQEHLGKQVDLVIHGGF--LGQQPTTVIDLTEPAPQV 194 Query: 192 LRPGGLEI 199 +R G ++ Sbjct: 195 VRDGSGDV 202 >gi|251789771|ref|YP_003004492.1| Sua5/YciO/YrdC/YwlC family protein [Dickeya zeae Ech1591] gi|247538392|gb|ACT07013.1| Sua5/YciO/YrdC/YwlC family protein [Dickeya zeae Ech1591] Length = 206 Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust. Identities = 41/172 (23%), Positives = 68/172 (39%), Gaps = 6/172 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + E L G I PT++ Y L + A+ R+ I+ + D+S + Sbjct: 17 INQTVEILRKGGVIVYPTDSGYALGCMLEDKAAMERICRIRSLDQNHNFTLMCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD + L K PG T +L +T ++ L KT RVP +L+ Sbjct: 77 SYAYVDNAAFRLIKNNTPGNYTFILK--ATKEVPRRLMNEKRKTIGMRVPSNPIALELLA 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 PL + G + + + K + L+I GG +G + T V Sbjct: 135 VLNEPLMSTTLMLPGNDFAESDPEEIQERLGKLVDLVIHGGF--LGQQPTTV 184 >gi|160875032|ref|YP_001554348.1| (NiFe) hydrogenase maturation protein HypF [Shewanella baltica OS195] gi|160860554|gb|ABX49088.1| (NiFe) hydrogenase maturation protein HypF [Shewanella baltica OS195] Length = 840 Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 68/154 (44%), Gaps = 12/154 (7%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 TD L+ A + L G +AI + L D+RN A+ +L K+R A PL ++D Sbjct: 265 TDLAVLKAAADRLHQGQILAIKGLGGFHLICDARNDKAVNKLRLRKQRQA-KPLAVMMAD 323 Query: 67 ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA---NL-KTACFRVPC 121 I M + + + D L+ P + L+S+ H LS A NL K F Sbjct: 324 IQMAQHYVTGTDAEWQVLSSQERP------IVLMSSRAEHDLSLAVAPNLNKLGVFLPYT 377 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHIL 155 L+ + PL SAN SG+ ITN ++ Sbjct: 378 PLHHLLLGLFKGPLVATSANVSGEPIITNCDELI 411 >gi|271500650|ref|YP_003333675.1| Sua5/YciO/YrdC/YwlC family protein [Dickeya dadantii Ech586] gi|270344205|gb|ACZ76970.1| Sua5/YciO/YrdC/YwlC family protein [Dickeya dadantii Ech586] Length = 206 Score = 37.4 bits (85), Expect = 3.1, Method: Compositional matrix adjust. Identities = 44/186 (23%), Positives = 72/186 (38%), Gaps = 6/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + E L I PT++ Y L + A+ R+ I++ + D+S + Sbjct: 17 INQTVEILRKSGVIVYPTDSGYALGCMLEDKAAMERICRIRELDQNHNFTLMCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129 +A VD + L K PG T +L +T ++ L KT RVP L+ Sbjct: 77 SYAYVDNAAFRLIKNNTPGNYTFILK--ATKEVPRRLMNDKRKTIGMRVPSNPIALDLLS 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 PL + G + + + K + LII GG +G + T V E Sbjct: 135 VLNEPLMSTTLMLPGNDFAESDPEEIQEQLGKRVDLIIHGGF--LGQQPTTVIDLTEDVP 192 Query: 190 RILRPG 195 ++R G Sbjct: 193 VVVREG 198 >gi|288941674|ref|YP_003443914.1| (NiFe) hydrogenase maturation protein HypF [Allochromatium vinosum DSM 180] gi|288897046|gb|ADC62882.1| (NiFe) hydrogenase maturation protein HypF [Allochromatium vinosum DSM 180] Length = 789 Score = 37.4 bits (85), Expect = 3.1, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 4/137 (2%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +A+ A L G +AI + LA D+ + TA+ L + K+R A P D + Sbjct: 211 DAIAAASRLLTEGRILAIKGIGGFHLACDATHDTAVETLRQRKRRFA-KPFALMARDPDV 269 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 +++HA + L L P L+L+ L +D+ P T F +P L+ Sbjct: 270 IRRHARLSELEAEW--LASPAAPILLLERLRESDLAPGIAPGQSTLGFMLPYSPLHHLLL 327 Query: 129 ETYGHPLAIPSANRSGQ 145 + PL + S N S + Sbjct: 328 ADWDRPLVMTSGNLSDE 344 >gi|315267264|gb|ADT94117.1| (NiFe) hydrogenase maturation protein HypF [Shewanella baltica OS678] Length = 838 Score = 37.4 bits (85), Expect = 3.1, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 68/154 (44%), Gaps = 12/154 (7%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 TD L+ A + L G +AI + L D+RN A+ +L K+R A PL ++D Sbjct: 263 TDLAVLKAAADRLHQGQILAIKGLGGFHLICDARNDKAVNKLRLRKQRQA-KPLAVMMAD 321 Query: 67 ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA---NL-KTACFRVPC 121 I M + + + D L+ P + L+S+ H LS A NL K F Sbjct: 322 IQMAQHYVTGTDAEWQVLSSQERP------IVLMSSRAEHDLSLAVAPNLNKLGVFLPYT 375 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHIL 155 L+ + PL SAN SG+ ITN ++ Sbjct: 376 PLHHLLLGLFKGPLVATSANVSGEPIITNCDELI 409 >gi|114563279|ref|YP_750792.1| (NiFe) hydrogenase maturation protein HypF [Shewanella frigidimarina NCIMB 400] gi|114334572|gb|ABI71954.1| (NiFe) hydrogenase maturation protein HypF [Shewanella frigidimarina NCIMB 400] Length = 803 Score = 37.4 bits (85), Expect = 3.1, Method: Compositional matrix adjust. Identities = 53/215 (24%), Positives = 91/215 (42%), Gaps = 30/215 (13%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 AL +A E ++ G +AI + L D+ N A+ L + K+R A PL V++++ Sbjct: 212 ALEQAVEMINRGGIVAIKGLGGFHLVCDATNNDAVAALRQRKQRLA-KPLAIMVTNLAQA 270 Query: 71 KKHASVDPLSLHLAKLFWP-GPLTLVLDLLSTTD-----------IHPLSTANL------ 112 K V L P P+TL+ +++ D IHP++ + L Sbjct: 271 K--LCVSGTETEWQVLTSPEKPITLMTKRVASVDGKDNGRDNCGNIHPIALSPLLAPGID 328 Query: 113 KTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172 + F L++ P+ SANRSG+ I N + I + + ++DG Sbjct: 329 RLGVFLPYTPLHHLLMQRLHKPIVATSANRSGEPIIAN-----QAEIEQHLSHVVDG--- 380 Query: 173 KIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS 207 +G I+N C+ V + G L++ L R + Sbjct: 381 ILGHNRPIINA-CDDSVVQVIDGQLQVIRLARGYA 414 >gi|227496187|ref|ZP_03926493.1| RNA binding protein [Actinomyces urogenitalis DSM 15434] gi|226834270|gb|EEH66653.1| RNA binding protein [Actinomyces urogenitalis DSM 15434] Length = 205 Score = 37.4 bits (85), Expect = 3.2, Method: Compositional matrix adjust. Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 7/156 (4%) Query: 20 DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL 79 D GL +A PT++ Y LA N + R+ I++ + +D + A V Sbjct: 26 DGGL-VAYPTDSGYALACAPGNKEGLDRIRAIRQLDDKHNFTFVCADFAQAGPLAIVGNN 84 Query: 80 SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK--TACFRVP-CGFTKKLIETYGHPLA 136 + L K PGP T +L T ++ P T N K T R+P T+ L+ +G P+ Sbjct: 85 AFRLIKRLTPGPWTFILK--GTKEV-PRMTLNPKKHTLGVRIPDHAITQALVAGFGAPIL 141 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172 + R G + ++ I ++I+G ++ Sbjct: 142 SSTFIRPGNEEPETSGWEIEDALGHLIDVVIEGPVT 177 >gi|256081558|ref|XP_002577036.1| SUMO ligase [Schistosoma mansoni] gi|238662329|emb|CAZ33273.1| SUMO ligase, putative [Schistosoma mansoni] Length = 1258 Score = 37.4 bits (85), Expect = 3.3, Method: Compositional matrix adjust. Identities = 26/116 (22%), Positives = 52/116 (44%), Gaps = 7/116 (6%) Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 N L H+ + + ++ +VDP + A WP L + S + + ++ ++ + Sbjct: 945 NDLNSHLDEFTTIRNELTVDPKQISRADSNWPPGLVQTMLRTSNSSFNNINQFDINDS-- 1002 Query: 118 RVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173 F ++L+E H + R+ IS+ + + +L + K + L DGG SK Sbjct: 1003 --KSAFYQRLLEVTAHRVNQTMLKRNSHISLKDNEKLLYN---KALSLAFDGGGSK 1053 >gi|291300925|ref|YP_003512203.1| (NiFe) hydrogenase maturation protein HypF [Stackebrandtia nassauensis DSM 44728] gi|290570145|gb|ADD43110.1| (NiFe) hydrogenase maturation protein HypF [Stackebrandtia nassauensis DSM 44728] Length = 764 Score = 37.4 bits (85), Expect = 3.3, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 1/67 (1%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 AL +A L+ G IA+ Y L D+ + TA+RRL +K RP PL V + Sbjct: 209 ALSQAIAVLETGGLIAMKGVGGYQLVTDAGDDTAVRRLRHVKNRPG-KPLAVMVGTLDRA 267 Query: 71 KKHASVD 77 ++ A +D Sbjct: 268 RRLADLD 274 >gi|288553290|ref|YP_003425225.1| [NiFe] hydrogenase maturation protein HypF [Bacillus pseudofirmus OF4] gi|288544450|gb|ADC48333.1| [NiFe] hydrogenase maturation protein HypF [Bacillus pseudofirmus OF4] Length = 779 Score = 37.4 bits (85), Expect = 3.4, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 1/68 (1%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +A+R + L G I+I Y LA D + P AI L EIK RP PL + + Sbjct: 209 ESAIRGTIDALTEGRIISIKGLGGYHLACDMKQPYAITHLREIKSRPT-RPLAVMMRSLE 267 Query: 69 MVKKHASV 76 +VK++ V Sbjct: 268 IVKQYCHV 275 >gi|154508878|ref|ZP_02044520.1| hypothetical protein ACTODO_01389 [Actinomyces odontolyticus ATCC 17982] gi|153798512|gb|EDN80932.1| hypothetical protein ACTODO_01389 [Actinomyces odontolyticus ATCC 17982] Length = 205 Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust. Identities = 38/159 (23%), Positives = 68/159 (42%), Gaps = 10/159 (6%) Query: 16 CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN--PLICHVSDISMVKKH 73 + L+ G IA+PT++ Y +A + N + + I+K + L+CH + + + Sbjct: 20 VDLLERGGTIALPTDSGYAVATRAGNKAGMDTIRAIRKLDDKHNFSLLCH--SFAQLGEL 77 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK--TACFRVPCG-FTKKLIET 130 +D K PGP T + L T ++ P N K T R+P T+ ++E Sbjct: 78 VIIDNHEFRTMKALTPGPYTFI--LRGTKEV-PRIMLNKKKHTVGVRIPDHVITQAIVEA 134 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169 G PLA + G+ + I ++ L++ G Sbjct: 135 LGEPLACSTLIMPGEEEPLTDGFDVDDRIGHQVDLVVVG 173 >gi|322515024|ref|ZP_08068033.1| translation factor [Actinobacillus ureae ATCC 25976] gi|322118975|gb|EFX91148.1| translation factor [Actinobacillus ureae ATCC 25976] Length = 184 Score = 37.0 bits (84), Expect = 3.6, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 27/52 (51%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 N L E L +A PTE V+GL + + A+R L ++KKRP LI Sbjct: 2 NNLENIVEQLKQNNVVAYPTEAVFGLGCNPNSEAAVRALLKLKKRPEEKGLI 53 >gi|290953955|ref|ZP_06558576.1| Sua5_yciO_yrdC family protein [Francisella tularensis subsp. holarctica URFT1] gi|295312676|ref|ZP_06803422.1| Sua5_yciO_yrdC family protein [Francisella tularensis subsp. holarctica URFT1] Length = 106 Score = 37.0 bits (84), Expect = 4.0, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 45/86 (52%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++ LD IAIPT++ Y LA ++ I ++ +I+ + + D+S + Sbjct: 17 LKELANILDNDGIIAIPTDSGYALACRMKSKKGIDKIIKIRNFDSSHNFTLCCKDLSEIF 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLD 97 ++A VD + L K + PGP T +L+ Sbjct: 77 EYAKVDNNAYRLLKRYTPGPYTFILN 102 >gi|116180920|ref|XP_001220309.1| hypothetical protein CHGG_01088 [Chaetomium globosum CBS 148.51] gi|88185385|gb|EAQ92853.1| hypothetical protein CHGG_01088 [Chaetomium globosum CBS 148.51] Length = 1139 Score = 37.0 bits (84), Expect = 4.5, Method: Composition-based stats. Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 1/35 (2%) Query: 23 LPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 +P+A PTETVYGL D+ A+R +Y K PA+ Sbjct: 1102 VPVAFPTETVYGLGADATRSAAVRGIYSAKG-PAL 1135 >gi|325294647|ref|YP_004281161.1| Acylphosphatase [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065095|gb|ADY73102.1| Acylphosphatase [Desulfurobacterium thermolithotrophum DSM 11699] Length = 756 Score = 37.0 bits (84), Expect = 4.5, Method: Compositional matrix adjust. Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 4/137 (2%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +A+R E+L+ G IA+ + L D+ N A++ L + K+R P D Sbjct: 204 DAIRLTIEYLEKGKIIALKGLGGFHLICDATNEKAVKELRKRKQREE-KPFAVMFPDFET 262 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCGFTKKLI 128 KK+A + L K P+ ++L+ TD+ + +S N F ++ Sbjct: 263 TKKYAYISSLEKRALKSV-ESPI-VILEKKENTDLAYSISPENKTIGAFLPYTPLHHIIL 320 Query: 129 ETYGHPLAIPSANRSGQ 145 + +G P+ SAN + + Sbjct: 321 KDFGKPIVATSANLTDE 337 >gi|317124934|ref|YP_004099046.1| translation factor SUA5 [Intrasporangium calvum DSM 43043] gi|315589022|gb|ADU48319.1| translation factor SUA5 [Intrasporangium calvum DSM 43043] Length = 207 Score = 37.0 bits (84), Expect = 4.7, Method: Compositional matrix adjust. Identities = 39/186 (20%), Positives = 71/186 (38%), Gaps = 10/186 (5%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 +A + L G IA PT++ + L NP R+ I+ + +D + + + Sbjct: 19 QAVQILRDGGLIAYPTDSGFALGCSLDNPDGRSRILRIRGLDDRHHFTLVCADFAQLGQF 78 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKLIE 129 A +D K PGP T ++ +HP +T R+P + L++ Sbjct: 79 AQLDNTVFRAVKSHTPGPYTFIVPATKQVPRRLLHP----KKRTVGVRIPDHPVVRALLQ 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 +G P+ + G + + + +ID G + GLE T V + Sbjct: 135 AHGEPILSSTLLMPGDEEPMTDGWAIKERLDHVVDAVIDSG--ECGLEPTTVVDFSDGYA 192 Query: 190 RILRPG 195 ++R G Sbjct: 193 ELIRVG 198 >gi|325971179|ref|YP_004247370.1| SUA5/yciO/yrdC domain [Spirochaeta sp. Buddy] gi|324026417|gb|ADY13176.1| SUA5/yciO/yrdC domain [Spirochaeta sp. Buddy] Length = 189 Score = 36.6 bits (83), Expect = 4.8, Method: Compositional matrix adjust. Identities = 37/174 (21%), Positives = 77/174 (44%), Gaps = 31/174 (17%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 Q++ T + + L + +P +T+YGL+ + T++ +L +K++ + I Sbjct: 6 QLLYKTVDTTVDQVVRLLQENKILVLPCDTIYGLS--GQYNTSLEKLCSLKQKKGQHQFI 63 Query: 62 CHVSDISMVKKHASVDPLSLHLAKL------FWPGPLTLVLDLLSTTDIHPLSTANLKTA 115 ++++ H HL K+ WP LT++L+ + + Sbjct: 64 VLA---TLMQAH--------HLCKIPPVLEKHWPCALTVILE----------NQNGEGST 102 Query: 116 CFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 RVP FT++++ G P+ S N +G +IT++ I+ + K ++ID Sbjct: 103 AIRVPDDPFTQQILNKLGKPIYSTSVNDAG-FAITSITDIIFTYKQKVQAIVID 155 >gi|158431283|pdb|2YV4|A Chain A, Crystal Structure Of C-Terminal Sua5 Domain From Pyrococcus Horikoshii Hypothetical Sua5 Protein Ph0435 Length = 105 Score = 36.6 bits (83), Expect = 4.8, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 26/46 (56%) Query: 275 LKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++E A NLF ++ D +G + + GLG+A+ NRL +A+ Sbjct: 54 VEEVAKNLFKALRYXDKAGVDVVIAEGVEERGLGLAVXNRLRKASG 99 >gi|37522843|ref|NP_926220.1| hypothetical protein glr3274 [Gloeobacter violaceus PCC 7421] gi|35213845|dbj|BAC91215.1| glr3274 [Gloeobacter violaceus PCC 7421] Length = 197 Score = 36.6 bits (83), Expect = 4.8, Method: Compositional matrix adjust. Identities = 51/185 (27%), Positives = 78/185 (42%), Gaps = 14/185 (7%) Query: 18 FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASV 76 +L AG A+PT+TV GL P ++Y +K R PLI + + + + A Sbjct: 24 YLRAGGVGAMPTDTVPGLVC---LPEYAEQIYALKGRDEHKPLILLGAAAADLAFYTAQW 80 Query: 77 DPLSLHLAKLFWPGPLTLVLDLLST--TDIHPLSTANLKTACFRVPCGFTKKLIETYGHP 134 LA+ WPG LTLVL + +H T R+P + P Sbjct: 81 RSEWTELAERGWPGALTLVLPVGGRVPAAVH----RGGGTVGVRIPNHPDAHALLAKTGP 136 Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194 LA SANRSGQ + + I + ++ G G ST+V + + ++LR Sbjct: 137 LASTSANRSGQPVLIEPQAIRRTFAGVA---LLAGTYRGSGTASTVVRWE-DDGWQVLRQ 192 Query: 195 GGLEI 199 G ++ Sbjct: 193 GDFKL 197 >gi|89255812|ref|YP_513174.1| Sua5_yciO_yrdC family protein [Francisella tularensis subsp. holarctica LVS] gi|167009603|ref|ZP_02274534.1| Sua5_yciO_yrdC family protein [Francisella tularensis subsp. holarctica FSC200] gi|254367173|ref|ZP_04983204.1| sua5/yciO/yrdC family protein [Francisella tularensis subsp. holarctica 257] gi|89143643|emb|CAJ78841.1| Sua5_yciO_yrdC family protein [Francisella tularensis subsp. holarctica LVS] gi|134252994|gb|EBA52088.1| sua5/yciO/yrdC family protein [Francisella tularensis subsp. holarctica 257] Length = 121 Score = 36.6 bits (83), Expect = 5.0, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 45/86 (52%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++ LD IAIPT++ Y LA ++ I ++ +I+ + + D+S + Sbjct: 17 LKELANILDNDGIIAIPTDSGYALACRMKSKKGIDKIIKIRNFDSSHNFTLCCKDLSEIF 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLD 97 ++A VD + L K + PGP T +L+ Sbjct: 77 EYAKVDNNAYRLLKRYTPGPYTFILN 102 >gi|223042141|ref|ZP_03612312.1| hypothetical protein AM202_0726 [Actinobacillus minor 202] gi|223017080|gb|EEF15521.1| hypothetical protein AM202_0726 [Actinobacillus minor 202] Length = 184 Score = 36.6 bits (83), Expect = 5.3, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 31/56 (55%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80 +A PTE V+GL + + A++ L ++KKRP LI ++ +++ + LS Sbjct: 17 VAYPTEAVFGLGCNPNSEQAVKLLLDLKKRPEEKGLILIAHNLELLRPYIDESQLS 72 >gi|315444891|ref|YP_004077770.1| (NiFe) hydrogenase maturation protein HypF [Mycobacterium sp. Spyr1] gi|315263194|gb|ADT99935.1| (NiFe) hydrogenase maturation protein HypF [Mycobacterium sp. Spyr1] Length = 756 Score = 36.6 bits (83), Expect = 5.4, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + + LR A L AG +A+ Y LA D+ P A+ L +KR P V Sbjct: 199 LAGESGLRAARRMLRAGKIVAVKGIGGYHLACDATGPRAVTTL-RARKRRGDKPFAVMVP 257 Query: 66 DISMVKKHASVDPLSLHL 83 D+ ++ A VDP S L Sbjct: 258 DLDAARRVAEVDPASAAL 275 >gi|145224560|ref|YP_001135238.1| (NiFe) hydrogenase maturation protein HypF [Mycobacterium gilvum PYR-GCK] gi|145217046|gb|ABP46450.1| (NiFe) hydrogenase maturation protein HypF [Mycobacterium gilvum PYR-GCK] Length = 756 Score = 36.6 bits (83), Expect = 5.5, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + + LR A L AG +A+ Y LA D+ P A+ L +KR P V Sbjct: 199 LAGESGLRAARRMLRAGKIVAVKGIGGYHLACDATGPRAVTTL-RARKRRGDKPFAVMVP 257 Query: 66 DISMVKKHASVDPLSLHL 83 D+ ++ A VDP S L Sbjct: 258 DLDAARRVAEVDPASAAL 275 >gi|206895108|ref|YP_002247264.1| [NiFe] hydrogenase maturation protein HypF [Coprothermobacter proteolyticus DSM 5265] gi|206737725|gb|ACI16803.1| [NiFe] hydrogenase maturation protein HypF [Coprothermobacter proteolyticus DSM 5265] Length = 764 Score = 36.6 bits (83), Expect = 5.7, Method: Compositional matrix adjust. Identities = 19/44 (43%), Positives = 27/44 (61%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP 55 LRK + L G +AI + Y LA D+ N TA+ RL ++K+RP Sbjct: 202 LRKTVDILKDGKVVAIKSLGGYLLACDALNETAVNRLRKLKRRP 245 >gi|82697921|gb|ABB88998.1| hypothetical protein [uncultured crenarchaeote] Length = 167 Score = 36.6 bits (83), Expect = 5.9, Method: Compositional matrix adjust. Identities = 34/151 (22%), Positives = 64/151 (42%), Gaps = 22/151 (14%) Query: 191 ILRPGGLEIETLKRAIS-VELEYCV--------DETSTPQSPGMLKSHYAPRSQVRL-RA 240 +LRPGGL +E ++ I + + + + +SPGM HY+P++ + L + Sbjct: 11 LLRPGGLPLERIREVIDKISIHSSILNPKKDHLKSGNGYKSPGMKYRHYSPKADLILVKG 70 Query: 241 IHVNPREALIRFGN-----------VPIKNIENAIISLNLSKTGK-LKEAAFNLFNYMKI 288 + R ++ + K+I N I+ + G + + LF + Sbjct: 71 TKIKVRNKIVELARRMRNEQSKSVCIMTKSINNNYIADIVWFVGNDFETISRGLFEIFRY 130 Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 D+ I + LG+A+ +RL+RAA Sbjct: 131 VDNHNIDVIIAEEMDCVDLGLAVMDRLKRAA 161 >gi|256379000|ref|YP_003102660.1| Sua5/YciO/YrdC/YwlC family protein [Actinosynnema mirum DSM 43827] gi|255923303|gb|ACU38814.1| Sua5/YciO/YrdC/YwlC family protein [Actinosynnema mirum DSM 43827] Length = 206 Score = 36.6 bits (83), Expect = 6.1, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 38/86 (44%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 A+ +A E + AG IA PT++ Y L N + R+ +I+ + D + + Sbjct: 16 AIDQAVEVVRAGGLIAYPTDSCYALGCQLGNKEGLDRIRQIRNLDDKHHFTLVCRDFAQL 75 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVL 96 + A V+ + K PG T +L Sbjct: 76 GQFAYVENAAFRAIKAATPGSYTFIL 101 >gi|308050856|ref|YP_003914422.1| (NiFe) hydrogenase maturation protein HypF [Ferrimonas balearica DSM 9799] gi|307633046|gb|ADN77348.1| (NiFe) hydrogenase maturation protein HypF [Ferrimonas balearica DSM 9799] Length = 771 Score = 36.2 bits (82), Expect = 6.3, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 AL +A + L AG +AI Y LAVD+ N A+ L + K RP+ P V+D++ Sbjct: 202 EQALTEAVDALRAGQIVAIKALGGYHLAVDASNDQAVSTLRQRKHRPS-KPFALMVADLA 260 Query: 69 MV 70 M Sbjct: 261 MA 262 >gi|145637788|ref|ZP_01793438.1| hypothetical protein CGSHiHH_02760 [Haemophilus influenzae PittHH] gi|145269033|gb|EDK08986.1| hypothetical protein CGSHiHH_02760 [Haemophilus influenzae PittHH] Length = 67 Score = 36.2 bits (82), Expect = 6.3, Method: Composition-based stats. Identities = 14/37 (37%), Positives = 26/37 (70%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +A PTE V+GL + ++ +A+++L ++K+RP LI Sbjct: 16 VAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLI 52 >gi|298370013|ref|ZP_06981329.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria sp. oral taxon 014 str. F0314] gi|298281473|gb|EFI22962.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria sp. oral taxon 014 str. F0314] Length = 242 Score = 36.2 bits (82), Expect = 6.7, Method: Compositional matrix adjust. Identities = 40/174 (22%), Positives = 68/174 (39%), Gaps = 10/174 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A + + G + PT++ Y L + A+ R+ I+K + L +D+ + Sbjct: 53 VKQAADIIRNGGVVVYPTDSCYALGCKLGDKAAMERILAIRKIDLKHHLTLMCADLRELG 112 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDL---LSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 +A VD K PG T +L + +HP KT RVP L Sbjct: 113 TYAKVDNAQFRQLKAATPGSYTFILQATKEVPNRTLHP----KRKTIGLRVPDNTIALSL 168 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 ++ G PL + + + + + L+IDGG G E T V Sbjct: 169 LQELGEPLLSCTLMLPEDDEPLTDPYEIRDRLEHAVDLVIDGGWC--GTEPTTV 220 >gi|196232005|ref|ZP_03130861.1| hypothetical protein CfE428DRAFT_4027 [Chthoniobacter flavus Ellin428] gi|196224127|gb|EDY18641.1| hypothetical protein CfE428DRAFT_4027 [Chthoniobacter flavus Ellin428] Length = 35 Score = 36.2 bits (82), Expect = 6.8, Method: Composition-based stats. Identities = 16/35 (45%), Positives = 23/35 (65%) Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 M+ D++G I +P HGLGIAI +RL +A+A Sbjct: 1 MRRLDEAGLDMILAEEVPEHGLGIAIMDRLRKASA 35 >gi|118474454|ref|YP_892105.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter fetus subsp. fetus 82-40] gi|118413680|gb|ABK82100.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter fetus subsp. fetus 82-40] Length = 741 Score = 36.2 bits (82), Expect = 7.1, Method: Compositional matrix adjust. Identities = 51/175 (29%), Positives = 70/175 (40%), Gaps = 19/175 (10%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 I+ D A+R L +G IAI + L D+ N AI L E K RP P Sbjct: 192 IVLANDEEAIRLCANELKSGKIIAIKGIGGFHLVCDATNQKAISSLRERKNRPD-KPFAI 250 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLD---LLSTTDIHPLSTA-NLKT-ACF 117 DI M A ++ F LT + LL + +I P + A NLK F Sbjct: 251 MCKDIQMASLVAYINE--------FEEDALTSNIKPIILLKSKEILPANLALNLKKIGIF 302 Query: 118 RVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172 P L E P+ SAN SG+ I + + SI K++ + DG + Sbjct: 303 LPPTSLHLLLFEYIDFPIIATSANISGEPIIIDFE-----SISKKLIKVCDGALD 352 >gi|170727252|ref|YP_001761278.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella woodyi ATCC 51908] gi|169812599|gb|ACA87183.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella woodyi ATCC 51908] Length = 213 Score = 35.8 bits (81), Expect = 8.4, Method: Compositional matrix adjust. Identities = 47/193 (24%), Positives = 78/193 (40%), Gaps = 6/193 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + G I PT++ Y L A+ R+ I++ + D S + Sbjct: 24 INQAVNAIKNGGVIVYPTDSGYALGCLLGEKDAMSRIARIRQIDNDHNFSLMCRDQSELS 83 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-KLIET 130 +A VD + + K PGP T + S L KT RVP L+E Sbjct: 84 TYAKVDNQAYRVLKHNTPGPYTFIFK-ASKEVPKRLQNPKKKTIGIRVPDNVIALALLEA 142 Query: 131 YGHPLAIPSANRSG-QISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 PL S G + + ++ +HI + ++ +II GG +G + T V E + Sbjct: 143 LDEPLMSTSLILPGEEFTESDPEHI-RDILEHQVDVIIHGGY--LGEKPTTVIDLSEGDI 199 Query: 190 RILRPGGLEIETL 202 I+R G +I + Sbjct: 200 EIIREGAGDISSF 212 >gi|119356556|ref|YP_911200.1| (NiFe) hydrogenase maturation protein HypF [Chlorobium phaeobacteroides DSM 266] gi|119353905|gb|ABL64776.1| (NiFe) hydrogenase maturation protein HypF [Chlorobium phaeobacteroides DSM 266] Length = 773 Score = 35.8 bits (81), Expect = 9.2, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Query: 33 YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 + LAVD+RN A+R L E K R P +SD+ +V++ V+P Sbjct: 240 FHLAVDARNDAAVRLLRERKGREE-KPFAVMMSDMELVRQFCDVEP 284 Searching..................................................done Results from round 2 >gi|254780760|ref|YP_003065173.1| hypothetical protein CLIBASIA_03235 [Candidatus Liberibacter asiaticus str. psy62] gi|254040437|gb|ACT57233.1| hypothetical protein CLIBASIA_03235 [Candidatus Liberibacter asiaticus str. psy62] Length = 330 Score = 476 bits (1226), Expect = e-132, Method: Composition-based stats. Identities = 330/330 (100%), Positives = 330/330 (100%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL Sbjct: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP Sbjct: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI Sbjct: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA Sbjct: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS Sbjct: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300 Query: 301 SIPNHGLGIAINNRLERAAAPRNQSQRIVP 330 SIPNHGLGIAINNRLERAAAPRNQSQRIVP Sbjct: 301 SIPNHGLGIAINNRLERAAAPRNQSQRIVP 330 >gi|315121975|ref|YP_004062464.1| hypothetical protein CKC_01125 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495377|gb|ADR51976.1| hypothetical protein CKC_01125 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 320 Score = 410 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 251/319 (78%), Positives = 285/319 (89%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 MSITDS+ L++ACEFLDAGLPI IPTETVYGLAV++R+P+AIRRLYEIK+RP NPLICH Sbjct: 1 MSITDSDVLQQACEFLDAGLPIVIPTETVYGLAVNARDPSAIRRLYEIKQRPPTNPLICH 60 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 VS+ISMVKK+A +D LSLHL+KLFWPGPLTLVLDLLS DIHPL+ +NL TACFRVP GF Sbjct: 61 VSNISMVKKYAHIDDLSLHLSKLFWPGPLTLVLDLLSENDIHPLAISNLNTACFRVPRGF 120 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 KKLI+TYG+PLAIPSAN SGQIS TN++HILSS ICK+IPL IDGGISKIGLESTIVNV Sbjct: 121 AKKLIDTYGYPLAIPSANISGQISTTNIQHILSSPICKQIPLAIDGGISKIGLESTIVNV 180 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 + ++ + ILRPGGLEI+ +++AI ++EY ET+TP SPG L+SHYAPRSQVRLRA H+ Sbjct: 181 KHDQTIHILRPGGLEIDKIEKAIGGKIEYSTSETATPLSPGRLQSHYAPRSQVRLRATHI 240 Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303 NP EALIRF N PIKN +NAIISLNLSK+GKLKEAAFNLFNYMKIADDSGA SIAFS IP Sbjct: 241 NPGEALIRFANFPIKNSKNAIISLNLSKSGKLKEAAFNLFNYMKIADDSGAISIAFSPIP 300 Query: 304 NHGLGIAINNRLERAAAPR 322 NHGLGIAINNRLERAAAPR Sbjct: 301 NHGLGIAINNRLERAAAPR 319 >gi|325292109|ref|YP_004277973.1| hypothetical protein AGROH133_04322 [Agrobacterium sp. H13-3] gi|325059962|gb|ADY63653.1| hypothetical protein AGROH133_04322 [Agrobacterium sp. H13-3] Length = 325 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 165/320 (51%), Positives = 217/320 (67%), Gaps = 1/320 (0%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 + AL+ A E L G PIA+PTETVYGLA D+ +P AI R+YE K RP NPLICH Sbjct: 7 IENERETALQAAVEELSRGQPIALPTETVYGLAADATDPAAITRIYETKGRPQFNPLICH 66 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 ++DI+M +++A DP+S LA+ FWPGPLTLVL L + IH L+TA L T RVP GF Sbjct: 67 MADIAMAERYAVFDPVSRRLAEAFWPGPLTLVLPLKPASGIHSLATAGLDTVGIRVPQGF 126 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 LI + PLA PSAN SG+IS T+ H+ + + I LI+DGG + +G+ESTIV V Sbjct: 127 AGDLIRRFDKPLAAPSANSSGKISPTSAAHV-EADLGNRINLILDGGAASVGVESTIVKV 185 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 + + +VR+LRPGG+ E ++R +LE ++ ++PGML SHYAP + VRL A V Sbjct: 186 EDDGRVRLLRPGGIVTEEIERITGTQLERPEKASAAIEAPGMLASHYAPGAAVRLDATSV 245 Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303 + EALIRFG + ++ E A L+LS +G L EAA NLF+Y+K AD SGA++IA ++IP Sbjct: 246 SANEALIRFGGIAVEGQETARTVLDLSPSGDLAEAAANLFDYLKAADASGAATIAVTTIP 305 Query: 304 NHGLGIAINNRLERAAAPRN 323 HGLG AIN+RL RAAAPR Sbjct: 306 AHGLGEAINDRLSRAAAPRG 325 >gi|159184438|ref|NP_353749.2| hypothetical protein Atu0724 [Agrobacterium tumefaciens str. C58] gi|159139751|gb|AAK86534.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 325 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 168/320 (52%), Positives = 218/320 (68%), Gaps = 1/320 (0%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 + AL+ + L G PIA+PTETVYGLA D+ NP AI R+YE K RP NPLICH Sbjct: 7 IETERETALQASVAELADGRPIALPTETVYGLAADATNPAAITRIYETKGRPQFNPLICH 66 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 ++DI+M +++A DP+S LA+ FWPGPLTLVL L +DIH L+TA L T RVP GF Sbjct: 67 MADIAMAERYAVFDPISRKLAEAFWPGPLTLVLPLKPESDIHSLATAGLDTVGIRVPQGF 126 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 LI +G PLA PSAN SG+IS T+ H+ + + ++I L++DGG + +G+ESTIV V Sbjct: 127 ASDLIRRFGKPLAAPSANSSGKISPTSAAHV-EADLGQKINLVLDGGAAAVGVESTIVKV 185 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 + + +VR+LRPGG+ E ++R V LE ++ ++PGML SHYAP + VRL A V Sbjct: 186 EQDGRVRLLRPGGIVTEEIERLAGVRLERPKKASAAIEAPGMLASHYAPGATVRLGATSV 245 Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303 P EALIRFG + I E A L+LS +G L EAA NLF+Y+K AD SGA +IA ++IP Sbjct: 246 LPDEALIRFGGIAISGEETARTILDLSPSGDLAEAAANLFDYLKAADASGADTIAITAIP 305 Query: 304 NHGLGIAINNRLERAAAPRN 323 HGLG AIN+RL RAAAPR Sbjct: 306 THGLGEAINDRLSRAAAPRG 325 >gi|121602316|ref|YP_988708.1| Sua5/YciO/YrdC family protein [Bartonella bacilliformis KC583] gi|120614493|gb|ABM45094.1| Sua5/YciO/YrdC family protein [Bartonella bacilliformis KC583] Length = 320 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 155/324 (47%), Positives = 213/324 (65%), Gaps = 4/324 (1%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I+ + +S+++++A E L G + +PTETVYGLA D+ N A+ ++ IK RP NPL Sbjct: 1 MTILPL-NSHSIKEAVEILKKGQLVVLPTETVYGLAGDATNGKAVASIFAIKGRPQFNPL 59 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 I HVS I M + + +D LS L + FWPGPLTLVL L +IHPL+TA L T R P Sbjct: 60 IAHVSSIKMAECYVEIDCLSRRLMEAFWPGPLTLVLPLKPHHNIHPLTTAGLNTLAVRFP 119 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 G ++++ +G PLA PSAN+SG +S T+ + S+ +++ LIID G +KIGLESTI Sbjct: 120 DGGFAEIVQCFGRPLAAPSANQSGYLSPTSAASVF-DSLGEKVSLIIDNGPAKIGLESTI 178 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 V V C+ + +LRPGG+ E +++ + L+ +D+ + ++PGMLKSHYAP S VRL A Sbjct: 179 VKV-CDGNIYLLRPGGIIAEDIEKVVEKSLKR-MDQCAAIEAPGMLKSHYAPNSLVRLNA 236 Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300 V EAL+ FG I +ENAI LNLS++G+L+EAAFN F YMK D A IA Sbjct: 237 QTVENGEALLAFGTQRIAGVENAIYVLNLSESGQLEEAAFNFFQYMKQLDLFKARCIAVE 296 Query: 301 SIPNHGLGIAINNRLERAAAPRNQ 324 IP +GLG AIN+RL RAAAP+ + Sbjct: 297 PIPFYGLGEAINDRLIRAAAPKGE 320 >gi|138896951|ref|YP_001127404.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus thermodenitrificans NG80-2] gi|134268464|gb|ABO68659.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus thermodenitrificans NG80-2] Length = 345 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 119/329 (36%), Positives = 176/329 (53%), Gaps = 16/329 (4%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 +++A E+L G IA PTETVYGL D+ N TA+ +++ K RP+ NPLI HV+ ++ V Sbjct: 20 QIQEAAEWLRTGEVIAFPTETVYGLGADAANTTAVEKIFAAKGRPSDNPLIVHVASLAQV 79 Query: 71 KKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + AS+ P++ L + FWPGPLTLVL + TA L T R+P LI Sbjct: 80 ESIAASIPPVAKTLMERFWPGPLTLVLPKRDGA-VSERVTAGLSTVAVRMPDHPLALALI 138 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E G LA PSANRSG+ S T H+L + + I +IDGG + +G+EST+++ E Sbjct: 139 EASGLALAAPSANRSGRPSPTTAAHVL-ADLNGRIAGVIDGGPTGVGVESTVLDCSGEVP 197 Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVR--------LRA 240 ILRPGG+ E L I E DE + P++PGM +HYAP++ + L+ Sbjct: 198 -TILRPGGVTKEALSEVIGRVEEAAGDEQTAPKAPGMKYTHYAPKAPLWIAAGPPSFLQR 256 Query: 241 IHVNPREALIRFGNVPIKNIEN---AIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297 + R G + + +N A + L L+ A L++ ++ D++G + I Sbjct: 257 LVDESRAEGKTVGVLTTEENKNRYVADVVLACGARRDLETVAQRLYDVLRQFDETGVNLI 316 Query: 298 AFSSIPNHGLGIAINNRLERAAAPRNQSQ 326 + P G+G AI NRL +AA R S+ Sbjct: 317 YSEAFPEEGIGAAIMNRLRKAAGGRVISE 345 >gi|319408205|emb|CBI81858.1| conserved hypothetical protein [Bartonella schoenbuchensis R1] Length = 320 Score = 372 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 157/324 (48%), Positives = 215/324 (66%), Gaps = 4/324 (1%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I+ + +S ++++A E L G +A+PTETVYGLA D+ N A+ ++ KKRP NPL Sbjct: 1 MTILPL-NSASIKEAVEVLKQGQLVALPTETVYGLAGDATNGKAVASIFTTKKRPQFNPL 59 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 I HVS I M + + +D LS + FWPGPLTLVL L +IHPL+T+ L T R P Sbjct: 60 IVHVSSIVMAEHYVEIDLLSRRFMEAFWPGPLTLVLPLKVNHNIHPLTTSGLDTLAVRFP 119 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 G ++++ +G PLA PSAN+SG +S T+ + +S+ +PLIIDGG+SKIGLESTI Sbjct: 120 VGGFAEVVQHFGRPLAAPSANQSGGLSPTSAASVF-ASLGASVPLIIDGGVSKIGLESTI 178 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 + V C+K + +LRPGG+ E ++ L+ +D+ + ++PGMLKSHYAP + VRL A Sbjct: 179 IKV-CDKNIYLLRPGGVTAEEIEEVAGQPLK-QLDQRAAIEAPGMLKSHYAPNALVRLNA 236 Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300 V EAL+ FG I ENAI LNLS++G+L+EAAF+LF+YMK D IA Sbjct: 237 QKVESDEALLAFGPKRIVGAENAISILNLSESGQLEEAAFHLFDYMKQLDSLKVRCIAVE 296 Query: 301 SIPNHGLGIAINNRLERAAAPRNQ 324 SIP +GLG+AIN+RL RAAAPR + Sbjct: 297 SIPFYGLGVAINDRLMRAAAPRGK 320 >gi|163761038|ref|ZP_02168116.1| hypothetical protein HPDFL43_03344 [Hoeflea phototrophica DFL-43] gi|162281819|gb|EDQ32112.1| hypothetical protein HPDFL43_03344 [Hoeflea phototrophica DFL-43] Length = 323 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 159/323 (49%), Positives = 220/323 (68%), Gaps = 3/323 (0%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 QI++++D N LR A E L G +A+PTETVYGLA D+ NP+AI +YE K RP NPLI Sbjct: 3 QILTVSDPNTLRAAVEALRRGEAVAVPTETVYGLAADATNPSAITAIYEAKGRPRFNPLI 62 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 HVSD+ M + H PL+ LA FWPGPLTLVL L IH L+TA L+TA R+P Sbjct: 63 SHVSDMDMARAHVLFTPLAEKLAAAFWPGPLTLVLPLNPDGGIHELATAGLETAAVRIPE 122 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 GF + LI+++G PLA PSANRSG+IS T+ +H+ + + I L++DGG ++G+ESTI+ Sbjct: 123 GFARTLIKSFGGPLAAPSANRSGRISPTSARHV-ADDLDGRINLVLDGGPCRVGVESTIL 181 Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 V +K + +LRPGG+ ++ ++ A V ++ D ++ +PGMLKSHYAP + +RL A Sbjct: 182 AVNGDK-LTLLRPGGIPVDAIETAAGVAVDRPGPDAQTSVIAPGMLKSHYAPDAALRLNA 240 Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300 V P EA+++FG P+ + A + L+LS G L+EAA NLF+ +K AD S A+ IA + Sbjct: 241 TSVLPGEAILQFGGKPLDGQDKASLVLDLSPLGDLREAAANLFSMLKRADASQATGIAVA 300 Query: 301 SIPNHGLGIAINNRLERAAAPRN 323 +P HGLG AIN+RL RAAAPR+ Sbjct: 301 PVPQHGLGEAINDRLNRAAAPRD 323 >gi|295400676|ref|ZP_06810653.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus thermoglucosidasius C56-YS93] gi|312112634|ref|YP_003990950.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus sp. Y4.1MC1] gi|294977257|gb|EFG52858.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus thermoglucosidasius C56-YS93] gi|311217735|gb|ADP76339.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus sp. Y4.1MC1] Length = 351 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 110/326 (33%), Positives = 169/326 (51%), Gaps = 18/326 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 +++A ++L AG +A PTETVYGL ++++ A+ +++ K RP+ NPLI H++ + + Sbjct: 23 QIKEAAQWLKAGEVVAFPTETVYGLGANAKDTKAVEKIFAAKGRPSDNPLIVHIAHVKQL 82 Query: 71 KKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + S P ++ L + FWPGPLTL+L I TA L T R+P LI Sbjct: 83 DEIVSDVPRIAGMLIERFWPGPLTLILPKKEGV-ISDKVTAGLSTVAVRMPDHPVALALI 141 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E G PLA PSAN SG+ S T H+ + + I I+DGG + IG+EST+++ + Sbjct: 142 EESGLPLAAPSANISGRPSPTTAAHVFTD-LNGRIVGIVDGGETGIGVESTVLDCTSDVP 200 Query: 189 VRILRPGGLEIETLKRAIS--VELEYCVDETSTPQSPGMLKSHYAPRSQV--------RL 238 ILRPGG+ E L++ I DE TP+SPGM +HYAP+S + L Sbjct: 201 -TILRPGGVTKEALEQVIGNVAVDSALTDERQTPKSPGMKYTHYAPKSPMAIVQGSPAFL 259 Query: 239 RAIHVNPREALIRFGNVPIKN---IENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 + + R + G + + +A + L L+ A L++ ++ D++ Sbjct: 260 QTLVNQQRALGKKVGVMTTEENCLFYDADVVLTCGSRHDLRTVASRLYDTLRQFDETDVD 319 Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321 I S P G+G AI NRL +AA Sbjct: 320 FIYSESFPAEGIGAAIMNRLRKAAGH 345 >gi|196249769|ref|ZP_03148465.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus sp. G11MC16] gi|196210645|gb|EDY05408.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus sp. G11MC16] Length = 345 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 119/329 (36%), Positives = 176/329 (53%), Gaps = 16/329 (4%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 +++A E+L G IA PTETVYGL D+ N TA+ +++ K RP+ NPLI HV+ + V Sbjct: 20 QIQEAAEWLRTGEVIAFPTETVYGLGADAANTTAVEKIFAAKGRPSDNPLIVHVASRAQV 79 Query: 71 KKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + AS+ P++ L + FWPGPLTLVL + TA L T R+P LI Sbjct: 80 ESIAASIPPVAKTLMERFWPGPLTLVLPKRDGA-VSERVTAGLSTVAVRMPDHPLALALI 138 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E G LA PSANRSG+ S T H+L + + I +IDGG + +G+EST+++ E Sbjct: 139 EASGLALAAPSANRSGRPSPTTAAHVL-ADLNGRIAGVIDGGPTGVGVESTVLDCSGEVP 197 Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVR--------LRA 240 ILRPGG+ E L I E DE + P++PGM +HYAP++ + L+ Sbjct: 198 -TILRPGGVTKEALSEVIGRVEEAAGDEQTAPKAPGMKYTHYAPKAPLWIAAGPPSFLQR 256 Query: 241 IHVNPREALIRFGNVPIKNIEN---AIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297 + R G + + +N A + L +L+ A L++ ++ D++G + I Sbjct: 257 LVDESRAEGKTVGVLTTEENKNRYVADVVLACGARRELETVAQRLYDVLRQFDETGVNLI 316 Query: 298 AFSSIPNHGLGIAINNRLERAAAPRNQSQ 326 + P G+G AI NRL +AA R S+ Sbjct: 317 YSEAFPEEGIGAAIMNRLRKAAGGRVISE 345 >gi|316932620|ref|YP_004107602.1| Sua5/YciO/YrdC/YwlC family protein [Rhodopseudomonas palustris DX-1] gi|315600334|gb|ADU42869.1| Sua5/YciO/YrdC/YwlC family protein [Rhodopseudomonas palustris DX-1] Length = 332 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 141/326 (43%), Positives = 191/326 (58%), Gaps = 11/326 (3%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 + ++ TD++ +A L G +A PTETVYGL D+ N A+ RLY K RP+ NPLI Sbjct: 12 KTLTATDAD---EAVRALRGGGLVAFPTETVYGLGADASNAEAVARLYAAKGRPSFNPLI 68 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 HV+D+ + A D +L LA+ FWPGPLTLVL + + L+TA L + RVP Sbjct: 69 AHVADLDAARLIARFDTAALRLAETFWPGPLTLVLPKATNCSVCDLATAGLDSVALRVPS 128 Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 + L+ +G P+ PSANRSG +S T H+ ++ + I +I+DGG +G+ESTI Sbjct: 129 HPVAQALLRAFGGPVVAPSANRSGHVSPTTAAHV-AADLGGRIDVIVDGGPVMVGVESTI 187 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVEL----EYCVDETSTPQSPGMLKSHYAPRSQV 236 V + LRPGG+ E ++R + +L + + P +PGML SHYAPR+ V Sbjct: 188 VGCLGAPVL--LRPGGVPREAIERVLGHKLGAPAATNITDDHAPLAPGMLASHYAPRATV 245 Query: 237 RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296 RL A V P EAL+ FG+ E A+ NLS G L EAA LF ++ D+ GA Sbjct: 246 RLNAAEVKPGEALLAFGSELPPGAETAVAVHNLSPRGDLAEAAAQLFGALRALDERGARG 305 Query: 297 IAFSSIPNHGLGIAINNRLERAAAPR 322 IA SIP+HGLG AIN+RL RAAAPR Sbjct: 306 IAVMSIPHHGLGEAINDRLRRAAAPR 331 >gi|239828601|ref|YP_002951225.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus sp. WCH70] gi|239808894|gb|ACS25959.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus sp. WCH70] Length = 348 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 113/344 (32%), Positives = 178/344 (51%), Gaps = 22/344 (6%) Query: 3 IMSITDSNAL----RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58 + +I D ++ ++A + L +G +A PTETVYGL ++++ A+ +++ K RP+ N Sbjct: 8 VDNIVDKQSIYPQVKEAAQLLKSGEVVAFPTETVYGLGANAKDAKAVEKIFAAKGRPSDN 67 Query: 59 PLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 PLI H++ + +++ S + ++ L K FWPGPLTLVL I TA L T Sbjct: 68 PLIVHIAHLKQLEEMVSAIPDVAHTLIKRFWPGPLTLVLPKKEGV-ISDPVTAGLPTVAV 126 Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P LIE G PLA PSAN SG+ S T H+ + + I I+DGG + IG+ Sbjct: 127 RMPAHPVALALIEASGLPLAAPSANISGRPSPTTAAHVF-ADLNGRIAGIVDGGETGIGV 185 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAIS--VELEYCVDETSTPQSPGMLKSHYAPRS 234 EST+++ K ILRPGG+ E L++ I DE TP+SPGM +HYAP+S Sbjct: 186 ESTVLDCTT-KVPTILRPGGVTKEALEKVIGNVFVDSALTDERQTPKSPGMKYTHYAPKS 244 Query: 235 QV--------RLRAIHVNPREALIRFGNVPIKN---IENAIISLNLSKTGKLKEAAFNLF 283 + L+ + R + G + + +A + L L A +L+ Sbjct: 245 PMAIVQGSPAFLQTLVNKQRTLGKKVGVLTTEENRSFYDADVVLACGSRHDLHTVASHLY 304 Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQSQR 327 + ++ D++ I S P G+G AI NRL++AA + ++ Sbjct: 305 DTLRKFDETDVDFIYSESFPTEGIGEAIMNRLKKAAGHQVIDEK 348 >gi|319898590|ref|YP_004158683.1| hypothetical protein BARCL_0418 [Bartonella clarridgeiae 73] gi|319402554|emb|CBI76099.1| conserved protein of unknown function [Bartonella clarridgeiae 73] Length = 320 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 155/324 (47%), Positives = 212/324 (65%), Gaps = 4/324 (1%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I+ + +S A+++A L G +A+PTETVYGLA D+ + A+ ++ K RP NPL Sbjct: 1 MMILPL-NSEAIKQAVTILQQGKLVALPTETVYGLAGDATDGKAVASIFSTKGRPPFNPL 59 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 I HVSDI M + + +D LS L + FWPGPLT+VL L +IHPL+TA L T R P Sbjct: 60 IVHVSDIVMAECYVEIDLLSRRLMEAFWPGPLTVVLPLKVHHNIHPLTTAGLNTLAVRFP 119 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 G +++ +G PLA PSAN+SG++S T+ + +S + +PLIIDGG SKIGLESTI Sbjct: 120 RGGFAEIVRHFGRPLAAPSANQSGKLSPTSATSVFTS-LGTSVPLIIDGGDSKIGLESTI 178 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 + + C++ V ILRPGGL IE ++R ++ +D+ ++PGML+SHYAP + VRL Sbjct: 179 IKI-CDENVYILRPGGLAIEEIERVAKKSVKR-LDQQVAIEAPGMLRSHYAPDTSVRLNV 236 Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300 V EAL+ FG I+ ENAI LNLS+TG+L+EAAF+LF YM+ D IA Sbjct: 237 KRVESGEALLAFGPKRIEGFENAIAVLNLSETGRLEEAAFHLFQYMQELDSLKVKCIAVE 296 Query: 301 SIPNHGLGIAINNRLERAAAPRNQ 324 IP +GLG AIN+RL RAAAP+ + Sbjct: 297 PIPFYGLGEAINDRLTRAAAPKGK 320 >gi|49475221|ref|YP_033262.1| hypothetical protein BH04240 [Bartonella henselae str. Houston-1] gi|49238026|emb|CAF27233.1| hypothetical protein BH04240 [Bartonella henselae str. Houston-1] Length = 320 Score = 369 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 150/324 (46%), Positives = 217/324 (66%), Gaps = 4/324 (1%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I+ +S ++++A L+ G +A+PTETVYGLA D+ N AI ++ K+RP NPL Sbjct: 1 MTILPF-NSASVKEAVALLEQGRLVALPTETVYGLAGDATNGNAIASIFLTKRRPKFNPL 59 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 I HVS I M +++ +D LS HL ++FWPGPLT VL L + +IHPL+T+ L T R P Sbjct: 60 IAHVSSIFMAERYVEIDFLSRHLMEVFWPGPLTFVLPLKAQHNIHPLTTSGLNTLAVRFP 119 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 F ++++ +G PLA PSAN+SG +S T+ + + +S+ + +PLI+DGG SKIGLESTI Sbjct: 120 DSFFAEVVKCFGRPLAAPSANQSGHLSPTSAEAVW-ASLGESVPLILDGGFSKIGLESTI 178 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 + V ++ + +LRPGG+ E ++ L+ +D+ + ++PGMLKSHYAP + VRL Sbjct: 179 IKV-SDENIYLLRPGGIAAEDIEEVAGKSLKR-IDQRAAIEAPGMLKSHYAPNAAVRLNV 236 Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300 V EAL+ FG I +ENA+ LNLS++G+L+EAAF+LF YM+ D SIA Sbjct: 237 QKVEHGEALLAFGIKRIMGVENAVSVLNLSESGQLEEAAFHLFQYMRQLDSLKVRSIAVE 296 Query: 301 SIPNHGLGIAINNRLERAAAPRNQ 324 IP++GLG AIN+RL RAAAP+ + Sbjct: 297 PIPSYGLGEAINDRLIRAAAPKGK 320 >gi|212640537|ref|YP_002317057.1| putative translation factor (SUA5) [Anoxybacillus flavithermus WK1] gi|212562017|gb|ACJ35072.1| Putative translation factor (SUA5) [Anoxybacillus flavithermus WK1] Length = 355 Score = 369 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 106/332 (31%), Positives = 171/332 (51%), Gaps = 19/332 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 + +A +L G +A PTETVYGL ++ + A+ ++ K RP+ NPLI H++ + Sbjct: 28 QVTQAAAYLQRGELVAFPTETVYGLGANAMSTAAVENIFVAKGRPSDNPLIVHIATTEQL 87 Query: 71 KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 A + P++ L + FWPGPLTLVL + P TA L T R+P LI Sbjct: 88 HDIACDIPPVAYTLIEHFWPGPLTLVLP--KKEVVSPRVTAGLNTVAVRMPNHPIALALI 145 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 + G P+A PSANRSG+ S T KH+L + I I+DGG + +G+EST+++ Sbjct: 146 KASGLPIAAPSANRSGRPSPTTAKHVL-DDLNGRIAAIVDGGPTGVGVESTVIDCTTTIP 204 Query: 189 VRILRPGGLEIETLKRAIS-VELEYCVDETST-PQSPGMLKSHYAPRSQV--------RL 238 ILRPGG+ E +++ I V+++ + E P+SPGM +HYAP++ + L Sbjct: 205 -TILRPGGVTKEDIEQVIGVVDIDRALVEKEAVPKSPGMKYTHYAPKAPLVVVHGSSTFL 263 Query: 239 RAIHVNPREALIRFGNVPIKN---IENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 + + R + G + + A + + + L+ A L++ ++ D + Sbjct: 264 QQLVTEKRANGFKVGVLTTEEGRHTYEADVVIPCGRRDDLRTVAQQLYDALRTFDQTNVD 323 Query: 296 SIAFSSIPNHGLGIAINNRLERAAAPRNQSQR 327 I + PN G+G+AI NRL +AA ++ Sbjct: 324 MIYSEAFPNEGIGVAIMNRLLKAAGHEQMMEK 355 >gi|289435803|ref|YP_003465675.1| Sua5/YciO/YrdC/YwlC family protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289172047|emb|CBH28593.1| Sua5/YciO/YrdC/YwlC family protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 345 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 112/330 (33%), Positives = 171/330 (51%), Gaps = 19/330 (5%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 ++A E L G +A PTETVYGL D+ N AI+++YE K RP+ NPLI H++ + Sbjct: 19 QQAAELLRNGECVAFPTETVYGLGADATNQAAIQKIYEAKGRPSDNPLIVHIASRDQMDA 78 Query: 73 H-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIET 130 AS ++ L + FWPGPLT++L L + + +A L T R+P LI+ Sbjct: 79 FVASYPQKAIKLMEKFWPGPLTVILPLKKDS-LASNVSAGLSTVGVRMPEHPVSLALIKE 137 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G P+A PSANRSG+ S T+ H++ + ++ IIDGG + +GLEST+++ E V Sbjct: 138 AGIPVAAPSANRSGKPSPTSASHVI-EDLDDKVAGIIDGGATGVGLESTVIDCSTEIPV- 195 Query: 191 ILRPGGLEIETLKRAIS-VELEYC-VDETSTPQSPGMLKSHYAPRSQVRL---------- 238 ILRPGG+ E +++ I VEL ET P++PGM +HYAP++ V L Sbjct: 196 ILRPGGITKEQIEQVIGSVELANNDTKETEKPKAPGMKYTHYAPKAPVYLVEGSKAFWQK 255 Query: 239 --RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296 + ++ I + + ++ ++E A L+ ++ D + Sbjct: 256 EINKVEAAHKKLGILATKELLDGLTTNAVTQTTGSIESMEEIANQLYKGLRAFDHAEVDI 315 Query: 297 IAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326 I P LG A+ NRLE+AA R S+ Sbjct: 316 IFAEVYPETELGAAVMNRLEKAAGNRRISE 345 >gi|319406928|emb|CBI80565.1| conserved hypothetical protein [Bartonella sp. 1-1C] Length = 320 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 151/324 (46%), Positives = 212/324 (65%), Gaps = 4/324 (1%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I+ ++ A+ +A L G +A+PTETVYGLA D+ N A+ ++ K RP NPL Sbjct: 1 MAILPFNNA-AINQAVAILQQGQLVALPTETVYGLAGDATNGKAVASIFSTKARPLFNPL 59 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 I HVSDI M + + +D LS L + FWPGPLT+VL L + +IHPL+TA L T R P Sbjct: 60 IVHVSDIVMAECYVKIDFLSRRLMEAFWPGPLTVVLPLKAHHNIHPLTTAGLNTLAIRSP 119 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 G ++I +G PLA PSAN+SG++S T+ + +S + +PLIIDGG SKIGLESTI Sbjct: 120 KGGFVEVIRHFGRPLAAPSANQSGKLSPTSALSVFTS-LGTSVPLIIDGGDSKIGLESTI 178 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 + + C++ + +LRPGGL IE +++ ++ +D+ + ++PGMLKSHYAP + +RL Sbjct: 179 IKI-CDENIYLLRPGGLAIEEIEKVAKKSVKR-LDQKTAIEAPGMLKSHYAPNTSMRLNV 236 Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300 V EAL+ FG I+ +ENA+ LNLS +G+L+EAAF+LF YM+ D IA Sbjct: 237 KKVKSGEALLAFGPKRIEGVENAVAVLNLSTSGRLEEAAFHLFQYMQQLDSLKVKCIAVE 296 Query: 301 SIPNHGLGIAINNRLERAAAPRNQ 324 IP +GLG AIN+RL RAAAP+ + Sbjct: 297 PIPFYGLGEAINDRLIRAAAPKGK 320 >gi|49473987|ref|YP_032029.1| hypothetical protein BQ03430 [Bartonella quintana str. Toulouse] gi|49239490|emb|CAF25843.1| hypothetical protein BQ03430 [Bartonella quintana str. Toulouse] Length = 320 Score = 367 bits (943), Expect = 1e-99, Method: Composition-based stats. Identities = 150/324 (46%), Positives = 211/324 (65%), Gaps = 4/324 (1%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I+ + +++ ++KA L+ G +A+PTETVYGLA D+ N A+ ++ K+RP NPL Sbjct: 1 MTILPLNNAS-IKKAVALLEQGKLVALPTETVYGLAGDATNGRAVASIFFTKRRPKFNPL 59 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 I HVS I M + + +D LS L ++FWPGPLTLVL L + +IHPL+T+ L T R P Sbjct: 60 IAHVSGIVMAEHYVEIDFLSRRLMEVFWPGPLTLVLPLKAHHNIHPLTTSGLNTLAIRFP 119 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 +++E +G PLA PSAN+SG IS T+ + + + + +PLI+DGG KIGLESTI Sbjct: 120 DSRFAEVVERFGRPLAAPSANQSGCISPTSAGAVF-AFLGESVPLILDGGACKIGLESTI 178 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 V V C + + +LRPGGL E ++ L+ +D+ + ++PGMLKSHYAP + VRL Sbjct: 179 VKV-CGESIYLLRPGGLAAEEIEAVAGKSLKR-LDQQAAIEAPGMLKSHYAPNAMVRLNV 236 Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300 V EAL+ FG I +ENA+ LNLS++G+L+EAA +LF YMK D IA Sbjct: 237 QKVKHGEALLAFGRKRIMGVENAVSVLNLSESGQLEEAASHLFEYMKQLDSLKVKYIAVE 296 Query: 301 SIPNHGLGIAINNRLERAAAPRNQ 324 IP++GLG AIN+RL RAAAP+ + Sbjct: 297 PIPSYGLGEAINDRLIRAAAPKEK 320 >gi|313622340|gb|EFR92826.1| protein Sua5 [Listeria innocua FSL J1-023] Length = 345 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 121/342 (35%), Positives = 181/342 (52%), Gaps = 20/342 (5%) Query: 2 QIMSITDSNAL-RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 +I SN + +KA E L G +A PTETVYGL D+ N AI+++Y K RP+ NPL Sbjct: 7 KINKQQSSNLIYQKAAELLQNGECVAFPTETVYGLGADATNQAAIQKIYAAKGRPSDNPL 66 Query: 61 ICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I H++ + + AS P +L L + FWPGPLT++L L + + +A L T R+ Sbjct: 67 IVHIAKREQMDQFIASYPPKALQLMEAFWPGPLTVILPLKKDS-LAANVSAGLSTVGVRM 125 Query: 120 PCGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P +LI T P+A PSANRSG+ S T +H++ + E+ IIDGG + +GLES Sbjct: 126 PEHPVSLELIATANIPIAAPSANRSGKPSPTTAEHVI-EDLDGEVAGIIDGGPTGVGLES 184 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQV 236 T+++ + + ILRPGG+ E +++ I V ET P++PGM +HYAP++ V Sbjct: 185 TVIDCSLDVPI-ILRPGGITKEQIEQVIGTVDLSTNSVTETEKPKAPGMKYTHYAPKAPV 243 Query: 237 RLRAIHVNPRE--------ALIRFGNVPIKNIENAII-SLNLSKTGKLK---EAAFNLFN 284 L + A + G + K + + + S + TG +K E A +L+ Sbjct: 244 YLVEGSSQFWQSEINKVETAGKKLGILATKELTSKLATSAVIQPTGSIKAMDEIATSLYK 303 Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326 ++ D + I P LG AI NRLE+AA R S+ Sbjct: 304 GLRAFDHADVDIIFAEVYPETELGAAIMNRLEKAAGNRRISE 345 >gi|222147737|ref|YP_002548694.1| hypothetical protein Avi_0976 [Agrobacterium vitis S4] gi|221734725|gb|ACM35688.1| conserved hypothetical protein [Agrobacterium vitis S4] Length = 323 Score = 366 bits (941), Expect = 2e-99, Method: Composition-based stats. Identities = 159/316 (50%), Positives = 213/316 (67%), Gaps = 2/316 (0%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 + A+R A L+AG IA+PTETVYGLA D+ NP AI R+YE K RP NPLICHV+D Sbjct: 10 SPEPAIRAALPLLEAGEVIAMPTETVYGLAADATNPQAITRIYETKGRPQFNPLICHVAD 69 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126 ++M + + DPLS LA+ FWPGPLTL++ L IHPL+TA L T R+P GF + Sbjct: 70 LAMAEHYGVFDPLSRQLAERFWPGPLTLIVPLAPDCAIHPLATAGLDTVGLRMPLGFAAE 129 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LI +G PLA PSAN SG+IS T H+ + +IPLI+D + +G+ESTI+ V+ + Sbjct: 130 LIAAFGKPLAAPSANTSGKISPTTAAHV-EEDLGAKIPLILDAEAAGVGVESTILKVE-D 187 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246 ++++LRPGGL +E ++ A + + + ++PGML SHYAP + VRL V Sbjct: 188 GQIQLLRPGGLSVEAVEEATGLRVIRPQKAGAIIEAPGMLASHYAPEAAVRLNVTSVYAD 247 Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306 EA+I FG+ + +E A + LNLS +G L EAA NLF++MK AD SGA+ IAF++IP HG Sbjct: 248 EAVITFGSAVPQGLEKAALVLNLSASGDLTEAAANLFSFMKRADASGAARIAFTAIPTHG 307 Query: 307 LGIAINNRLERAAAPR 322 LG AIN+RLERAAAPR Sbjct: 308 LGDAINDRLERAAAPR 323 >gi|16801746|ref|NP_472014.1| hypothetical protein lin2685 [Listeria innocua Clip11262] gi|16415221|emb|CAC97911.1| lin2685 [Listeria innocua Clip11262] Length = 345 Score = 366 bits (941), Expect = 2e-99, Method: Composition-based stats. Identities = 119/330 (36%), Positives = 176/330 (53%), Gaps = 19/330 (5%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 +KA E L G +A PTETVYGL D+ N AI+++Y K RP+ NPLI H++ + + Sbjct: 19 QKAAELLQNGECVAFPTETVYGLGADATNQAAIQKIYAAKGRPSDNPLIVHIAKREQMDQ 78 Query: 73 H-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIET 130 AS P +L L + FWPGPLT++L L + + +A L T R+P +LI T Sbjct: 79 FIASYPPKALQLMEAFWPGPLTVILPLKKDS-LAANVSAGLSTVGVRMPEHPVSLELIAT 137 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 P+A PSANRSG+ S T +H++ + EI IIDGG + +GLEST+++ + + Sbjct: 138 ANIPIAAPSANRSGKPSPTTAEHVI-EDLDGEIAGIIDGGPTGVGLESTVIDCSLDVPI- 195 Query: 191 ILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE- 247 ILRPGG+ IE +++ I ET P++PGM +HYAP++ V L + Sbjct: 196 ILRPGGITIEQIEQVIGTVDLSTNSTTETEKPKAPGMKYTHYAPKAPVYLVEGSSQFWQS 255 Query: 248 -------ALIRFGNVPIKNIENAII-SLNLSKTGKLK---EAAFNLFNYMKIADDSGASS 296 A + G + K + + + S + TG +K E A +L+ ++ D + Sbjct: 256 EINKVGIAGKKLGILATKELTSKLATSAVIQSTGSIKAMDEIATSLYKGLRAFDHADVDI 315 Query: 297 IAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326 I P LG AI NRLE+AA R S+ Sbjct: 316 IFAEVYPETELGAAIMNRLEKAAGNRRISE 345 >gi|229176001|ref|ZP_04303497.1| hypothetical protein bcere0006_50710 [Bacillus cereus MM3] gi|228607494|gb|EEK64820.1| hypothetical protein bcere0006_50710 [Bacillus cereus MM3] Length = 347 Score = 365 bits (939), Expect = 4e-99, Method: Composition-based stats. Identities = 113/332 (34%), Positives = 173/332 (52%), Gaps = 19/332 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 L++A + L IA PTETVYGL ++ N AI +++E K RP+ NPLI H+ S + Sbjct: 20 QLQEAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQL 79 Query: 71 KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + P++ L + FWPGPLT++L I TA L T R+P LI Sbjct: 80 DGIVKEIPPVAEKLMEHFWPGPLTIILPRKEG--ISEKVTAGLNTVGVRMPDHPVALALI 137 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E P+A PSANRSG+ S T H+ + ++I I+DGG + +G+EST+++ E Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVY-EDLNEKIAGIVDGGATGVGVESTVIDCTSEVP 196 Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV--------RL 238 ILRPGG+ E L+ I V L+ + DE P+SPGM +HYAP++ + + Sbjct: 197 -TILRPGGITKEQLEAVIGNVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255 Query: 239 RAIHVNPREALIRFGNV---PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 + I +E + G + +++ +A + L+ L A L++ ++ D S Sbjct: 256 QLIVDKKKEEGFKVGVLTTEEYQHVYSADVVLSCGVRSDLASVATKLYDVLRTFDASEVD 315 Query: 296 SIAFSSIPNHGLGIAINNRLERAAAPRNQSQR 327 I S PN G+G AI NRL +AA + ++ Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAGHQVITES 347 >gi|319405355|emb|CBI78972.1| conserved hypothetical protein [Bartonella sp. AR 15-3] Length = 320 Score = 365 bits (938), Expect = 5e-99, Method: Composition-based stats. Identities = 151/324 (46%), Positives = 210/324 (64%), Gaps = 4/324 (1%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I+ +S A+ +A L G +A+PTETVYGLA D+ N A+ ++ K RP NPL Sbjct: 1 MAILPF-NSAAINQAVTILQQGQLVALPTETVYGLAGDATNGKAVASIFSTKGRPFFNPL 59 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 I HVSDI M + + +D LS L + FWPGPLT+VL L + +IHPL+TA L T R P Sbjct: 60 IVHVSDIVMAECYVKIDFLSRRLMEAFWPGPLTVVLPLKAHHNIHPLTTAGLNTLAVRFP 119 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 G ++I +G PLA PSAN+SG++S T+ + S + +PLIIDGG SKIGLESTI Sbjct: 120 KGGFAEVIRHFGRPLAAPSANQSGKLSPTSAISVFKS-LGTLVPLIIDGGASKIGLESTI 178 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 + + C++ V +LRPGGL IE + + ++ +D+ + ++PGMLKSHYAP + +RL Sbjct: 179 IKI-CDENVYLLRPGGLAIEEIAKVAKKPVKR-LDQQAAIEAPGMLKSHYAPNTSMRLNV 236 Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300 V EAL+ FG ++ +ENA+ LNLS++G+L+EAAF+LF YM+ D IA Sbjct: 237 KKVESGEALLAFGPKRVEGVENAVAVLNLSESGRLEEAAFHLFQYMQQLDLPKVKCIAVE 296 Query: 301 SIPNHGLGIAINNRLERAAAPRNQ 324 IP +GLG AIN+RL RAAA + + Sbjct: 297 PIPFYGLGEAINDRLIRAAAAKGK 320 >gi|89095606|ref|ZP_01168500.1| sua5/yciO/yrdC/ywlC family protein [Bacillus sp. NRRL B-14911] gi|89089352|gb|EAR68459.1| sua5/yciO/yrdC/ywlC family protein [Bacillus sp. NRRL B-14911] Length = 346 Score = 365 bits (937), Expect = 7e-99, Method: Composition-based stats. Identities = 106/335 (31%), Positives = 168/335 (50%), Gaps = 18/335 (5%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 + S+ D +++A L +A PTETVYGL ++RN A+++++E K RP+ NPLI Sbjct: 12 VDSLNDYPQIKQAAALLAQNETVAFPTETVYGLGGNARNDEAVKKIFEAKGRPSDNPLII 71 Query: 63 HVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 H++D ++ V + L + FWPGPLT++ + + +TA L T R+P Sbjct: 72 HIADREQLEGIVESVPASADKLMEAFWPGPLTIIFNKKDG-QLSETATAGLNTVGIRMPD 130 Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 ++ G P+A PSANRSG+ S T H+ + I I+DGG + +G+EST+ Sbjct: 131 HPVALAILRESGVPVAAPSANRSGRPSPTTAGHV-KEDLNGRIAGIVDGGPTGVGVESTV 189 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAIS--VELEYCVDETSTPQSPGMLKSHYAPRSQV-- 236 ++ E V ILRPGG+ E L+R + DE P+SPGM HYAP + + Sbjct: 190 LDCTGEIPV-ILRPGGVTKEQLERVVGEVAADPALADEKEAPRSPGMKYRHYAPDAPLYI 248 Query: 237 ------RLRAIHVNPREALIRFGNVPIKN---IENAIISLNLSKTGKLKEAAFNLFNYMK 287 R++ + ++ G + ++ + K L+ A +L+ ++ Sbjct: 249 VEGTRERIQELVNEQHTEGLKAGVLTTAENEKFYDSDFTFICGKRANLETVAASLYEALR 308 Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 + SG I S P G+G AI NRL +AA R Sbjct: 309 SFNSSGVDVIFSESFPAEGVGEAIMNRLLKAAGHR 343 >gi|239831281|ref|ZP_04679610.1| Sua5/YciO/YrdC/YwlC family protein [Ochrobactrum intermedium LMG 3301] gi|239823548|gb|EEQ95116.1| Sua5/YciO/YrdC/YwlC family protein [Ochrobactrum intermedium LMG 3301] Length = 355 Score = 365 bits (937), Expect = 7e-99, Method: Composition-based stats. Identities = 147/319 (46%), Positives = 196/319 (61%), Gaps = 7/319 (2%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D A+ +A E L G +AIPTETVYGLA D+ N + ++ K RP NPLI HVS I Sbjct: 40 DDEAVLRAVEVLRRGGLVAIPTETVYGLAADASNGEGVAGIFAAKGRPQFNPLIAHVSGI 99 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLL----STTDIHPLSTANLKTACFRVPCGF 123 +M +++ + D LS LA++FWPGPLT+VL L + IHPL TA L+T R+P G Sbjct: 100 AMAERYVTFDALSRKLAEMFWPGPLTIVLPLKDRQDADRPIHPLVTAGLQTLAIRMPLGR 159 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + +IE P+A PSAN SG+IS T+ + + + LI+D G +G+ESTIV V Sbjct: 160 VRDIIEGLDSPVAAPSANTSGRISPTSASAVAGD-LGNRLDLILDAGPCGVGVESTIVKV 218 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 K V +LRPGGL E ++ I +L D TS Q+PGM+ SHYAP + +RL V Sbjct: 219 DGNK-VHLLRPGGLAAEEIEAVIGEKL-VRADHTSAIQAPGMMASHYAPDAAMRLDVGSV 276 Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303 P E L+ FG + E A +NLS G L+EAA NLF++M+ D +GA++IA IP Sbjct: 277 QPGEVLLAFGPQRVAGAEGAATVMNLSANGNLREAAANLFDFMRRLDATGAATIAVEPIP 336 Query: 304 NHGLGIAINNRLERAAAPR 322 GLG AIN+RL+RAAAPR Sbjct: 337 FDGLGEAINDRLKRAAAPR 355 >gi|228994044|ref|ZP_04153945.1| hypothetical protein bpmyx0001_47670 [Bacillus pseudomycoides DSM 12442] gi|228765692|gb|EEM14345.1| hypothetical protein bpmyx0001_47670 [Bacillus pseudomycoides DSM 12442] Length = 347 Score = 364 bits (936), Expect = 8e-99, Method: Composition-based stats. Identities = 114/329 (34%), Positives = 165/329 (50%), Gaps = 19/329 (5%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L+KA + L IA PTETVYGL ++ N AI +++E K RP+ NPLI H+ Sbjct: 17 DYPQLQKAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGSK 76 Query: 68 SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 S +K + ++ L K FWPGPLT++L I TA L T R+P Sbjct: 77 SQLKGIVRGIPEVAEVLMKHFWPGPLTIILP--KKEGISEKVTAGLDTVGVRMPDHPVAL 134 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LIE P+A PSANRSG+ S T H+ + +I I+DGG + +G+EST+++ Sbjct: 135 ALIEEANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVIDCTS 193 Query: 186 EKKVRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 E ILRPGG+ E L+ I V L+ + DE P++PGM +HYAP++ + + Sbjct: 194 EVP-TILRPGGITKEQLEEVIGTVSLDPALKDEKEKPKAPGMKYTHYAPKAPLSIVEGSR 252 Query: 244 NPREALIR-----------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDS 292 + + LI ++ A + L+ L A L++ ++ D S Sbjct: 253 DFIQQLIDQKKDEGYTVGVLTTEEYQHEYKADVVLSCGVRSDLASVATKLYDVLRTFDAS 312 Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAAP 321 I S PN G+G AI NRL +AA Sbjct: 313 KVDVIFSESFPNEGIGNAIMNRLTKAAGH 341 >gi|42784497|ref|NP_981744.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus ATCC 10987] gi|42740429|gb|AAS44352.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus ATCC 10987] Length = 346 Score = 364 bits (936), Expect = 9e-99, Method: Composition-based stats. Identities = 112/331 (33%), Positives = 172/331 (51%), Gaps = 19/331 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 L++A + L IA PTETVYGL ++ N AI +++E K RP+ NPLI H+ S + Sbjct: 20 QLQEAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQL 79 Query: 71 KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + P++ L + FWPGPLT++L I TA L T R+P LI Sbjct: 80 DGIVKEIPPVAEKLMEHFWPGPLTIILPRKEG--ISEKVTAGLNTVGVRMPDHPVALALI 137 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E P+A PSANRSG+ S T H+ + ++I I+DGG + +G+EST+++ Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVY-EDLNEKIAGIVDGGATGVGVESTVIDCTSAVP 196 Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV--------RL 238 ILRPGG+ E L+ I V L+ + DE P+SPGM +HYAP++ + + Sbjct: 197 -TILRPGGITKEQLESVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255 Query: 239 RAIHVNPREALIRFGNV---PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 + + +E + G + +++ NA + L+ L A L++ ++ D S Sbjct: 256 QRLADEKKEEGFKVGVLTTEEYQHVYNADVVLSCGVRSDLASVATKLYDVLRTFDASEVD 315 Query: 296 SIAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326 I S PN G+G AI NRL +AA + ++ Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAGHQIITE 346 >gi|324329274|gb|ADY24534.1| sua5/yciO/yrdC/ywlC family protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 346 Score = 364 bits (936), Expect = 9e-99, Method: Composition-based stats. Identities = 113/331 (34%), Positives = 172/331 (51%), Gaps = 19/331 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 L++A + L IA PTETVYGL ++ N AI +++E K RP+ NPLI H+ S + Sbjct: 20 QLQEAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQL 79 Query: 71 KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + P++ L + FWPGPLT++L I TA L T R+P LI Sbjct: 80 DGIVKEIPPVAEQLMEHFWPGPLTIILPRKEG--ISEKVTAGLNTVGVRMPDHPVALALI 137 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E P+A PSANRSG+ S T H+ + ++I I+DGG + +G+EST+++ Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVY-EDLNEKIAGIVDGGATGVGVESTVIDCTSAVP 196 Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV--------RL 238 ILRPGG+ E L+ I V L+ + DE P+SPGM +HYAP++ + + Sbjct: 197 -TILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255 Query: 239 RAIHVNPREALIRFGNV---PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 + I +E + G + +++ NA + L+ L A L++ ++ D S Sbjct: 256 QLIVDKKKEEGFKVGVLTTEEYQHVYNADVVLSCGVRSDLASVATKLYDVLRTFDASEVD 315 Query: 296 SIAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326 I S PN G+G AI NRL +AA + ++ Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAGHQIITE 346 >gi|229118821|ref|ZP_04248170.1| hypothetical protein bcere0017_50860 [Bacillus cereus Rock1-3] gi|228664622|gb|EEL20115.1| hypothetical protein bcere0017_50860 [Bacillus cereus Rock1-3] Length = 342 Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats. Identities = 111/326 (34%), Positives = 164/326 (50%), Gaps = 19/326 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 L++A L +A PTETVYGL ++ N AI +++E K RP+ NPLI H+ S + Sbjct: 16 QLQEAARLLRENEAVAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQL 75 Query: 71 KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + P++ L + FWPGPLT++L I TA L T R+P LI Sbjct: 76 DGIVNEIPPVAEKLMEHFWPGPLTIILPRKEG--ISEKVTAGLNTVGVRMPDHPVALALI 133 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E P+A PSANRSG+ S T H+ + +I I+DGG + +G+EST+++ E Sbjct: 134 EEANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVIDCTSEIP 192 Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV---------- 236 ILRPGG+ E L+ I V L+ + DE P+SPGM +HYAP++ + Sbjct: 193 -TILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 251 Query: 237 -RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 RL + + +++ +A + L+ L A L++ ++ D S Sbjct: 252 QRLVDKKKDEGFKVGVLTTEEYQHVYSADVVLSCGMRSDLASVATKLYDVLRTFDASEVD 311 Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321 I S PN G+G AI NRL +AA Sbjct: 312 VIFSESFPNDGIGNAIMNRLTKAAGH 337 >gi|229105918|ref|ZP_04236542.1| hypothetical protein bcere0019_50420 [Bacillus cereus Rock3-28] gi|228677492|gb|EEL31745.1| hypothetical protein bcere0019_50420 [Bacillus cereus Rock3-28] Length = 342 Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats. Identities = 111/326 (34%), Positives = 163/326 (50%), Gaps = 19/326 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 L++A L +A PTETVYGL ++ N AI +++E K RP+ NPLI H+ S + Sbjct: 16 QLQEAARLLRENEAVAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQL 75 Query: 71 KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + P++ L + FWPGPLT++L I TA L T R+P LI Sbjct: 76 DGIVNEIPPVAEKLMEHFWPGPLTIILPRKEG--ISEKVTAGLNTVGVRMPDHPVALALI 133 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E P+A PSANRSG+ S T H+ + +I I+DGG + +G+EST+++ E Sbjct: 134 EEANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVIDCTSEIP 192 Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV---------- 236 ILRPGG+ E L+ I V L+ + DE P+SPGM +HYAP++ + Sbjct: 193 -TILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSRKFI 251 Query: 237 -RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 RL + +++ +A + L+ L A L++ ++ D S Sbjct: 252 QRLVDKKKEEGFKVGVLTTEEYQHVYSADVVLSCGMRSDLASVATKLYDVLRTFDASEVD 311 Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321 I S PN G+G AI NRL +AA Sbjct: 312 VIFSESFPNDGIGNAIMNRLTKAAGH 337 >gi|229076540|ref|ZP_04209500.1| hypothetical protein bcere0024_49790 [Bacillus cereus Rock4-18] gi|229099758|ref|ZP_04230683.1| hypothetical protein bcere0020_49760 [Bacillus cereus Rock3-29] gi|228683647|gb|EEL37600.1| hypothetical protein bcere0020_49760 [Bacillus cereus Rock3-29] gi|228706573|gb|EEL58786.1| hypothetical protein bcere0024_49790 [Bacillus cereus Rock4-18] Length = 342 Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats. Identities = 111/326 (34%), Positives = 164/326 (50%), Gaps = 19/326 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 L++A L +A PTETVYGL ++ N AI +++E K RP+ NPLI H+ S + Sbjct: 16 QLQEAARLLRENEAVAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQL 75 Query: 71 KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + P++ L + FWPGPLT++L I TA L T R+P LI Sbjct: 76 DGIVNEIPPVAEKLMEHFWPGPLTIILPRKEG--ISEKVTAGLNTVGVRMPDHPVALALI 133 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E P+A PSANRSG+ S T H+ + +I I+DGG + +G+EST+++ E Sbjct: 134 EEANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVIDCTSEIP 192 Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV---------- 236 ILRPGG+ E L+ I V L+ + DE P+SPGM +HYAP++ + Sbjct: 193 -TILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 251 Query: 237 -RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 RL + + +++ +A + L+ L A L++ ++ D S Sbjct: 252 QRLVDKKKDEGFKVGVLTTEEYQHVYSADVVLSCGMRSDLASVATKLYDVLRTFDASEVD 311 Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321 I S PN G+G AI NRL +AA Sbjct: 312 VIFSESFPNDGIGNAIMNRLTKAAGH 337 >gi|229014495|ref|ZP_04171613.1| hypothetical protein bmyco0001_48980 [Bacillus mycoides DSM 2048] gi|229064976|ref|ZP_04200274.1| hypothetical protein bcere0026_50330 [Bacillus cereus AH603] gi|229136144|ref|ZP_04264897.1| hypothetical protein bcere0014_50170 [Bacillus cereus BDRD-ST196] gi|229170033|ref|ZP_04297725.1| hypothetical protein bcere0007_49700 [Bacillus cereus AH621] gi|228613458|gb|EEK70591.1| hypothetical protein bcere0007_49700 [Bacillus cereus AH621] gi|228647303|gb|EEL03385.1| hypothetical protein bcere0014_50170 [Bacillus cereus BDRD-ST196] gi|228716277|gb|EEL67989.1| hypothetical protein bcere0026_50330 [Bacillus cereus AH603] gi|228746845|gb|EEL96730.1| hypothetical protein bmyco0001_48980 [Bacillus mycoides DSM 2048] Length = 346 Score = 363 bits (934), Expect = 1e-98, Method: Composition-based stats. Identities = 110/326 (33%), Positives = 168/326 (51%), Gaps = 19/326 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 L++A L +A PTETVYGL ++ + AI +++E K RP+ NPLI H+ S + Sbjct: 20 QLKEAARLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQL 79 Query: 71 KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + P++ L + FWPGPLT++L I TA L T R+P LI Sbjct: 80 DGIVREIPPVAEKLMEHFWPGPLTIILPRKKG--ISERVTAGLNTVGVRMPDHPVALALI 137 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E P+A PSANRSG+ S T H+ + +I I+DGG + +G+EST+++ E Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVIDCTSEVP 196 Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV--------RL 238 ILRPGG+ E L+ I V L+ + DE P+SPGM +HYAP++ + + Sbjct: 197 -TILRPGGITKEQLEAVIGNVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255 Query: 239 RAIHVNPREALIRFGNV---PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 + I ++ + G + +++ +A + L+ L A L++ ++ D S Sbjct: 256 QRIVDEKKKEGFKVGVLTTEEYQHVYSADVVLSCGVRSDLASVATKLYDVLRTFDASEVD 315 Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321 I S PN G+G AI NRL +AA Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAGH 341 >gi|229000111|ref|ZP_04159681.1| hypothetical protein bmyco0003_46640 [Bacillus mycoides Rock3-17] gi|228759648|gb|EEM08624.1| hypothetical protein bmyco0003_46640 [Bacillus mycoides Rock3-17] Length = 343 Score = 363 bits (934), Expect = 1e-98, Method: Composition-based stats. Identities = 113/329 (34%), Positives = 166/329 (50%), Gaps = 19/329 (5%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L+KA + L IA PTETVYGL ++ N AI +++E K RP+ NPLI H+ Sbjct: 13 DYPQLQKAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGSK 72 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 S +K + ++ L K FWPGPLT++L I TA L T R+P Sbjct: 73 SQLKGIVREIPEVAEVLMKHFWPGPLTIILP--KKEGISEKVTAGLDTVGVRMPDHPVAL 130 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LIE P+A PSANRSG+ S T H+ + +I I+DGG + +G+EST+++ Sbjct: 131 ALIEEANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVIDCTS 189 Query: 186 EKKVRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV------- 236 E ILRPGG+ E L+ I V L+ + DE P++PGM +HYAP++ + Sbjct: 190 EVP-TILRPGGITKEQLEEVIGTVSLDPALKDEKEKPKAPGMKYTHYAPKAPLSIVEGSR 248 Query: 237 -RLRAIHVNPREALIRFGNVPIKNI---ENAIISLNLSKTGKLKEAAFNLFNYMKIADDS 292 ++ + ++ G + + A + L+ L A L++ ++ D S Sbjct: 249 DFIQQLVDQKKDEGYTVGVLTTEEYQHEYKADVVLSCGVRSDLASVATKLYDVLRTFDAS 308 Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAAP 321 I S PN G+G AI NRL +AA Sbjct: 309 KVDVIFSESFPNEGIGNAIMNRLTKAAGH 337 >gi|229020544|ref|ZP_04177289.1| hypothetical protein bcere0030_50250 [Bacillus cereus AH1273] gi|229026765|ref|ZP_04183097.1| hypothetical protein bcere0029_50320 [Bacillus cereus AH1272] gi|228734488|gb|EEL85150.1| hypothetical protein bcere0029_50320 [Bacillus cereus AH1272] gi|228740764|gb|EEL91017.1| hypothetical protein bcere0030_50250 [Bacillus cereus AH1273] Length = 346 Score = 363 bits (934), Expect = 2e-98, Method: Composition-based stats. Identities = 109/326 (33%), Positives = 167/326 (51%), Gaps = 19/326 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 L++A L +A PTETVYGL ++ + AI +++ K RP+ NPLI H+ S + Sbjct: 20 QLKEAARLLRENEAVAFPTETVYGLGANAMDDEAIAKIFAAKGRPSDNPLIVHIGTKSQL 79 Query: 71 KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + P++ L + FWPGPLT++L I TA L T R+P LI Sbjct: 80 DGIVREIPPVAEKLMEHFWPGPLTIILPRKEG--ISERVTAGLNTVGVRMPDHPVALALI 137 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E P+A PSANRSG+ S T H+ + +I I+DGG + +G+EST+++ E Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVIDCTSEVP 196 Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV--------RL 238 ILRPGG+ E L+ I V L+ + DE P+SPGM +HYAP++ + + Sbjct: 197 -TILRPGGITKEQLEAVIGNVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255 Query: 239 RAIHVNPREALIRFGNV---PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 + I ++ + G + +++ +A + L+ L A L++ ++ D S Sbjct: 256 QRIVDEKKKEGFKVGVLTTEEYQHVYSADVVLSCGMRNDLASVATKLYDVLRTFDASEVD 315 Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321 I S PN G+G AI NRL +AA Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAGH 341 >gi|163943013|ref|YP_001647897.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus weihenstephanensis KBAB4] gi|163865210|gb|ABY46269.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus weihenstephanensis KBAB4] Length = 346 Score = 363 bits (934), Expect = 2e-98, Method: Composition-based stats. Identities = 110/326 (33%), Positives = 167/326 (51%), Gaps = 19/326 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 L++A L +A PTETVYGL ++ + AI +++E K RP+ NPLI H+ S + Sbjct: 20 QLKEAARLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQL 79 Query: 71 KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + P++ L + FWPGPLT++L I TA L T R+P LI Sbjct: 80 DGIVREIPPVAEKLMEHFWPGPLTIILPRKKG--ISERVTAGLNTVGVRMPDHPVALALI 137 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E P+A PSANRSG+ S T H+ + +I I+DGG + +G+EST+++ E Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVIDCTSEVP 196 Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV--------RL 238 ILRPGG+ E L+ I V L+ + DE P+SPGM +HYAP++ + + Sbjct: 197 -TILRPGGITKEQLEAVIGNVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255 Query: 239 RAIHVNPREALIRFGNVPIKN---IENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 + I ++ + G + + + +A + L+ L A L++ ++ D S Sbjct: 256 QRIVDEKKKEGFKVGVLTTEEYQRVYSADVVLSCGVRSDLASVATKLYDVLRTFDASEVD 315 Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321 I S PN G+G AI NRL +AA Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAGH 341 >gi|39934152|ref|NP_946428.1| SUA5/yciO/yrdC domain-containing protein [Rhodopseudomonas palustris CGA009] gi|39648000|emb|CAE26520.1| Sua5/YciO/YrdC/YwlC protein family:SUA5 domain [Rhodopseudomonas palustris CGA009] Length = 348 Score = 363 bits (933), Expect = 2e-98, Method: Composition-based stats. Identities = 139/308 (45%), Positives = 177/308 (57%), Gaps = 7/308 (2%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L G +A PTETVYGL D+ N A+ RLY K RP+ NPLI HV+D+ + A D Sbjct: 43 LRGGGLVAFPTETVYGLGADASNAEAVARLYAAKGRPSFNPLIAHVADLDAARTIARFDA 102 Query: 79 LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAI 137 +L LA+ FWPGPLTLVL + + L+TA L + R+P + L+ + P+ Sbjct: 103 AALRLAEAFWPGPLTLVLPKQADCSVCDLATAGLDSVAIRIPSHPVAQALLRAFDGPVVA 162 Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197 PSANRSG +S T H+ +S + I +I+DGG +G+ESTIV+ + LRPGGL Sbjct: 163 PSANRSGHVSPTTAAHV-ASDLDGRIDVIVDGGPVMVGVESTIVSCLGAPVL--LRPGGL 219 Query: 198 EIETLKRAISVELEYCVDETS---TPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGN 254 E ++R + L S P +PGML SHYAPR+ VRL A V P EAL+ FG Sbjct: 220 PREAIERVLDQALGTPTTNNSDDHAPVAPGMLASHYAPRALVRLNATEVKPGEALLAFGP 279 Query: 255 VPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNR 314 E A NLS G L EAA +LF ++ DD GA IA IP HGLG AIN+R Sbjct: 280 ELPPGAETAAAVHNLSPRGDLTEAAAHLFGALRALDDRGARGIAVMPIPFHGLGEAINDR 339 Query: 315 LERAAAPR 322 L RAAAPR Sbjct: 340 LRRAAAPR 347 >gi|152977511|ref|YP_001377028.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152026263|gb|ABS24033.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cytotoxicus NVH 391-98] Length = 347 Score = 363 bits (933), Expect = 2e-98, Method: Composition-based stats. Identities = 110/329 (33%), Positives = 162/329 (49%), Gaps = 19/329 (5%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L++A + L +A PTETVYGL ++ N AI +++E K RP+ NPLI H+ Sbjct: 17 DYPQLQEAAKLLRENEAVAFPTETVYGLGANAMNDEAIVKIFEAKGRPSDNPLIVHIGSK 76 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 S + V P++ L K FWPGPLT++L I TA L T R+P Sbjct: 77 SQLTDIVREVPPVAEVLMKHFWPGPLTIILP--KKDGISEKVTAGLDTVGVRMPDHEVAL 134 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LIE P+A PSANRSG+ S T H+ + +I I+DGG + +G+EST+++ Sbjct: 135 ALIEAANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVIDCTS 193 Query: 186 EKKVRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 K ILRPGG+ E L+ I DE P++PGM +HYAP++ + + Sbjct: 194 -KVPTILRPGGITKEQLEEVIGPVSFDPALKDEKEKPKAPGMKYTHYAPKAPLSIVEGSR 252 Query: 244 NPREALIR-----------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDS 292 + + L+ +++ A + L+ L A L++ ++ D S Sbjct: 253 DFIQQLVEKKKREGYTVGVLTTEEYQHVYQADVVLSCGLRRDLASVATKLYDVLRTFDTS 312 Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAAP 321 I S PN G+G AI NRL +AA Sbjct: 313 KVDCIFSESFPNEGIGNAIMNRLIKAAGH 341 >gi|229164273|ref|ZP_04292206.1| hypothetical protein bcere0009_50340 [Bacillus cereus R309803] gi|228619213|gb|EEK76106.1| hypothetical protein bcere0009_50340 [Bacillus cereus R309803] Length = 347 Score = 363 bits (933), Expect = 2e-98, Method: Composition-based stats. Identities = 111/326 (34%), Positives = 169/326 (51%), Gaps = 19/326 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 +++A + L IA PTETVYGL ++ N AI +++E K RP+ NPLI H+ S + Sbjct: 20 QIQEAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQL 79 Query: 71 KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + P++ L + FWPGPLT++L I TA L T R+P LI Sbjct: 80 DGIVKEIPPVAEKLMEHFWPGPLTIILPRKEG--ISEKVTAGLNTVGIRMPDHPVALALI 137 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E P+A PSANRSG+ S T H+ + ++I I+DGG + +G+EST+++ Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVY-EDLNEKIAGIVDGGATGVGVESTVIDCTSTVP 196 Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV--------RL 238 ILRPGG+ E L+ I V L+ + DE P+SPGM +HYAP++ + + Sbjct: 197 -TILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255 Query: 239 RAIHVNPREALIRFGNV---PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 + I +E + G + +++ +A + L+ L A L++ ++ D S Sbjct: 256 QLIVDKKKEEGFKVGVLTTEEYQHVYSADVVLSCGVRSDLASVATKLYDVLRTFDASEVD 315 Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321 I S PN G+G AI NRL +AA Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAGH 341 >gi|240850071|ref|YP_002971464.1| translation factor, Sua5/YciO/YrdC family [Bartonella grahamii as4aup] gi|240267194|gb|ACS50782.1| translation factor, Sua5/YciO/YrdC family [Bartonella grahamii as4aup] Length = 320 Score = 363 bits (933), Expect = 2e-98, Method: Composition-based stats. Identities = 148/324 (45%), Positives = 216/324 (66%), Gaps = 4/324 (1%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I+ + +S ++R+A L+ G +A+PTETVYGLA D+ N AI ++ K RP +NPL Sbjct: 1 MTILPL-NSASIREAIALLEQGKLVALPTETVYGLAGDATNGRAISSIFSTKGRPQINPL 59 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 I HVS I M +++ +D LS L + FWPGPLTLVL L +IHPL+T+ L T R P Sbjct: 60 IAHVSGIEMAERYVKIDFLSRQLMEEFWPGPLTLVLPLKEQHNIHPLTTSGLNTLAVRFP 119 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 ++++ +G PLA PSAN+SG++S T+ + + +S+ + +PLI+DGG +KIGLESTI Sbjct: 120 DSLFAEVVQHFGRPLAAPSANQSGRLSPTSAEAVF-ASLGESVPLILDGGPAKIGLESTI 178 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 + + C++ + +LRPGGL + ++ + L+ +D+ + ++PGMLKSHYAP + +RL Sbjct: 179 IKI-CDENIYLLRPGGLAADKIEEVVGKSLKR-IDQRAAIEAPGMLKSHYAPNATIRLNV 236 Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300 V EAL+ FG+ + ENA+ LNLS+ GKL+EAAF+LF YMK D IA Sbjct: 237 EKVENGEALLAFGSKRVMGAENAVSILNLSEDGKLEEAAFHLFQYMKELDSFKVRCIAVE 296 Query: 301 SIPNHGLGIAINNRLERAAAPRNQ 324 IP++GLG AIN+RL RAAAP+ + Sbjct: 297 PIPSYGLGEAINDRLIRAAAPKEK 320 >gi|319403916|emb|CBI77504.1| conserved hypothetical protein [Bartonella rochalimae ATCC BAA-1498] Length = 320 Score = 363 bits (932), Expect = 2e-98, Method: Composition-based stats. Identities = 148/324 (45%), Positives = 211/324 (65%), Gaps = 4/324 (1%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I+ ++ A+ +A G +A+PTETVYGLA D+ N A+ ++ K RP NPL Sbjct: 1 MTILPFNNA-AINQAVAIFQQGQLVALPTETVYGLAGDATNGKAVASIFSTKARPLFNPL 59 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 I HVSDI M + + +D LS L + FWPGPLT+VL L + +IHPL+TA L T R P Sbjct: 60 IVHVSDIVMAECYVKIDLLSRRLMEAFWPGPLTVVLPLKAHHNIHPLTTAGLNTLAIRSP 119 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 G ++I +G PLA PSAN+SG++S T+ + +S + +PLIIDGG SKIG+ESTI Sbjct: 120 KGGFAEVIRHFGRPLAAPSANQSGKLSPTSALSVFTS-LGTSVPLIIDGGASKIGIESTI 178 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 + + C++ + +LRPGGL IE +++ ++ +++ + ++PGMLKSHYAP + +RL Sbjct: 179 IKI-CDENIYLLRPGGLAIEEIEKVAKKSVKR-LEQQTAIEAPGMLKSHYAPNTSMRLNV 236 Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300 V EAL+ FG I+ +ENA+ LNLS +G+L+EAAF+LF YM+ D IA Sbjct: 237 KKVKSGEALLAFGPKRIEGVENAVAVLNLSTSGRLEEAAFHLFQYMQQLDSLEVKCIAVE 296 Query: 301 SIPNHGLGIAINNRLERAAAPRNQ 324 IP +GLG AIN+RL RAAAP+ + Sbjct: 297 PIPFYGLGEAINDRLIRAAAPKGK 320 >gi|167636681|ref|ZP_02394969.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0442] gi|254744456|ref|ZP_05202136.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. Kruger B] gi|167527881|gb|EDR90703.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0442] Length = 346 Score = 363 bits (932), Expect = 2e-98, Method: Composition-based stats. Identities = 113/326 (34%), Positives = 168/326 (51%), Gaps = 19/326 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 L++A + L IA PTETVYGL ++ N AI +++E K RP+ NPLI H+ S + Sbjct: 20 QLQEAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQL 79 Query: 71 KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + P++ L + FWPGPLT++L I TA L T R+P LI Sbjct: 80 DGIVKEIPPVAEKLMEHFWPGPLTIILPRKEG--ISEKVTAGLHTVGVRMPDHPVALALI 137 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E P+A PSANRSG+ S T H+ + ++I I+DGG + +G+EST+++ Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVY-EDLNEKIAGIVDGGATGVGVESTVIDCTSTVP 196 Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV--------RL 238 ILRPGG+ E L+ I V L+ + DE P+SPGM +HYAP++ + + Sbjct: 197 -TILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255 Query: 239 RAIHVNPREALIRFGNVPIKN---IENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 + + +E + G + + I NA + L+ L A L++ ++ D S Sbjct: 256 QRLVDEKKEEGFKVGVLTTEEYHHIYNADVVLSCGVRSDLASVATKLYDVLRTFDASEVD 315 Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321 I S PN G+G AI NRL +AA Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAGH 341 >gi|229007631|ref|ZP_04165225.1| hypothetical protein bmyco0002_45100 [Bacillus mycoides Rock1-4] gi|228753642|gb|EEM03086.1| hypothetical protein bmyco0002_45100 [Bacillus mycoides Rock1-4] Length = 340 Score = 363 bits (932), Expect = 2e-98, Method: Composition-based stats. Identities = 113/329 (34%), Positives = 166/329 (50%), Gaps = 19/329 (5%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L+KA + L IA PTETVYGL ++ N AI +++E K RP+ NPLI H+ Sbjct: 10 DYPQLQKAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGSK 69 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 S +K + ++ L K FWPGPLT++L I TA L T R+P Sbjct: 70 SQLKGIVREIPEVAEVLMKHFWPGPLTIILP--KKEGISEKVTAGLDTVGVRMPDHPVAL 127 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LIE P+A PSANRSG+ S T H+ + +I I+DGG + +G+EST+++ Sbjct: 128 ALIEEANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVIDCTS 186 Query: 186 EKKVRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV------- 236 E ILRPGG+ E L+ I V L+ + DE P++PGM +HYAP++ + Sbjct: 187 EVP-TILRPGGITKEQLEEVIGTVSLDPALKDEKEKPKAPGMKYTHYAPKAPLSIVEGSR 245 Query: 237 -RLRAIHVNPREALIRFGNVPIKNI---ENAIISLNLSKTGKLKEAAFNLFNYMKIADDS 292 ++ + ++ G + + A + L+ L A L++ ++ D S Sbjct: 246 DFIQQLVDQKKDEGYTVGVLTTEEYQHEYKADVVLSCGVRSDLASVATKLYDVLRTFDAS 305 Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAAP 321 I S PN G+G AI NRL +AA Sbjct: 306 KVDVIFSESFPNEGIGNAIMNRLTKAAGH 334 >gi|192289677|ref|YP_001990282.1| Sua5/YciO/YrdC/YwlC family protein [Rhodopseudomonas palustris TIE-1] gi|192283426|gb|ACE99806.1| Sua5/YciO/YrdC/YwlC family protein [Rhodopseudomonas palustris TIE-1] Length = 326 Score = 363 bits (932), Expect = 2e-98, Method: Composition-based stats. Identities = 139/308 (45%), Positives = 178/308 (57%), Gaps = 7/308 (2%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L G +A PTETVYGL D+ N A+ RLY K RP+ NPLI HV+D+ + A D Sbjct: 21 LRGGGLVAFPTETVYGLGADASNAEAVARLYAAKGRPSFNPLIAHVADLDAARTIARFDA 80 Query: 79 LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAI 137 +L LA+ FWPGPLTLVL + + L+TA L + R+P + L+ +G P+ Sbjct: 81 AALRLAEAFWPGPLTLVLPKQADCSVCDLATAGLDSVAIRIPSHPVAQALLRAFGGPVVA 140 Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197 PSANRSG +S T H+ +S + I +I+DGG +G+ESTIV+ + LRPGGL Sbjct: 141 PSANRSGHVSPTTAAHV-ASDLDGRIDVIVDGGPVMVGVESTIVSCLGAPVL--LRPGGL 197 Query: 198 EIETLKRAISVELEYCVDETS---TPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGN 254 E ++R + L + P +PGML SHYAPR+ VRL A V P EAL+ FG Sbjct: 198 PREAIERVLGQALGTPTTNNADDHAPLAPGMLASHYAPRALVRLNATEVKPGEALLAFGP 257 Query: 255 VPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNR 314 E A NLS G L EAA +LF ++ DD GA IA IP HGLG AIN+R Sbjct: 258 ELPPGAETAAAVHNLSPRGDLPEAAAHLFGALRALDDRGARGIAVMPIPFHGLGEAINDR 317 Query: 315 LERAAAPR 322 L RAAAPR Sbjct: 318 LRRAAAPR 325 >gi|153007869|ref|YP_001369084.1| Sua5/YciO/YrdC/YwlC family protein [Ochrobactrum anthropi ATCC 49188] gi|151559757|gb|ABS13255.1| Sua5/YciO/YrdC/YwlC family protein [Ochrobactrum anthropi ATCC 49188] Length = 332 Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats. Identities = 147/319 (46%), Positives = 200/319 (62%), Gaps = 7/319 (2%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D A+++A E L G +AIPTETVYGLA D+ N + ++ K RP NPLI HVS I Sbjct: 17 DDEAVQRAVEVLRRGGLVAIPTETVYGLAADAANGEGVAGIFAAKGRPQFNPLIAHVSGI 76 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS----TTDIHPLSTANLKTACFRVPCGF 123 +M +++ + D LS LA++FWPGPLT+VL L IHPL TA L T R+P G Sbjct: 77 AMAERYVTFDALSRKLAEMFWPGPLTIVLPLKDRQDTDRPIHPLVTAGLSTLAIRMPLGR 136 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + +IE P+A PSAN SG+IS T+ + + + + ++ LI+D G +G+ESTIV V Sbjct: 137 VRDIIEGLDSPVAAPSANTSGRISPTSARAV-ADDLGNKLDLILDAGPCGVGVESTIVKV 195 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 K V +LRPGGL E ++ I +L D TS Q+PGM+ SHYAP + +RL V Sbjct: 196 DGNK-VHLLRPGGLAAEEIEAVIGEKL-VRADHTSAIQAPGMMASHYAPDAAMRLGVGSV 253 Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303 P EAL+ FG + + A + +NLS G L+EAA NLF++M+ D +GA++IA IP Sbjct: 254 QPGEALLAFGPQRVAGADTAKVIMNLSADGNLREAAANLFDFMRRLDATGATTIAVEPIP 313 Query: 304 NHGLGIAINNRLERAAAPR 322 GLG AIN+RL+RAAAPR Sbjct: 314 FEGLGEAINDRLKRAAAPR 332 >gi|300117839|ref|ZP_07055606.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus SJ1] gi|298724703|gb|EFI65378.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus SJ1] Length = 346 Score = 362 bits (931), Expect = 3e-98, Method: Composition-based stats. Identities = 113/331 (34%), Positives = 171/331 (51%), Gaps = 19/331 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 L++A + L IA PTETVYGL ++ N AI +++E K RP+ NPLI H+ S + Sbjct: 20 QLQEAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQL 79 Query: 71 KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + P++ L + FWPGPLT++L I TA L T R+P LI Sbjct: 80 DGIVKEIPPVAEKLMEHFWPGPLTIILPRKEG--ISEKVTAGLHTVGVRMPDHPVALALI 137 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E P+A PSANRSG+ S T H+ + ++I I+DGG + +G+EST+++ Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVY-EDLNEKIAGIVDGGATGVGVESTVIDCTSAVP 196 Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV--------RL 238 ILRPGG+ E L+ I V L+ + DE P+SPGM +HYAP++ + + Sbjct: 197 -TILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255 Query: 239 RAIHVNPREALIRFGNVPIKN---IENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 + + +E + G + + I NA + L+ L A L++ ++ D S Sbjct: 256 QRLVDEKKEEGFKVGVLTTEEYHHIYNADVVLSCGVRSDLASVATKLYDVLRTFDASEVD 315 Query: 296 SIAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326 I S PN G+G AI NRL +AA + ++ Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAGHQIITE 346 >gi|228988550|ref|ZP_04148637.1| hypothetical protein bthur0001_52050 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771167|gb|EEM19646.1| hypothetical protein bthur0001_52050 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 347 Score = 362 bits (931), Expect = 3e-98, Method: Composition-based stats. Identities = 112/332 (33%), Positives = 172/332 (51%), Gaps = 19/332 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 L++A + L IA PTETVYGL ++ N AI +++E K RP+ NPLI H+ S + Sbjct: 20 QLQEAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQL 79 Query: 71 KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + P++ L + FWPGPLT++L I TA L T R+P LI Sbjct: 80 DGIVKEIPPVAEKLMEHFWPGPLTIILPRKEG--ISERVTAGLNTVGVRMPDHPVALALI 137 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E P+A PSANRSG+ S T H+ + ++I I+DGG + +G+EST+++ Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVY-EDLNEKIAGIVDGGATGVGVESTVIDCTSAVP 196 Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV--------RL 238 ILRPGG+ E L+ I V L+ + DE P+SPGM +HYAP++ + + Sbjct: 197 -TILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255 Query: 239 RAIHVNPREALIRFGNV---PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 + I +E + G + +++ +A + L+ L A L++ ++ D S Sbjct: 256 QLIVDKKKEEGFKVGVLTTEEYQHVYSADVVLSCGVRSDLASVATKLYDVLRTFDASEVD 315 Query: 296 SIAFSSIPNHGLGIAINNRLERAAAPRNQSQR 327 I S PN G+G AI NRL +AA + ++ Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAGHQIITES 347 >gi|30265348|ref|NP_847725.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. Ames] gi|47778411|ref|YP_022236.2| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49188160|ref|YP_031413.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. Sterne] gi|49480413|ref|YP_039318.1| sua5/yciO/yrdC/ywlC family protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52140237|ref|YP_086594.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus E33L] gi|65317301|ref|ZP_00390260.1| COG0009: Putative translation factor (SUA5) [Bacillus anthracis str. A2012] gi|165871252|ref|ZP_02215901.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0488] gi|170688185|ref|ZP_02879396.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0465] gi|170709376|ref|ZP_02899789.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0389] gi|177651870|ref|ZP_02934453.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0174] gi|206978500|ref|ZP_03239359.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus H3081.97] gi|217962814|ref|YP_002341392.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus AH187] gi|218906503|ref|YP_002454337.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus AH820] gi|227818088|ref|YP_002818097.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. CDC 684] gi|228917934|ref|ZP_04081470.1| hypothetical protein bthur0012_51350 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228930333|ref|ZP_04093337.1| hypothetical protein bthur0010_50120 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228949046|ref|ZP_04111318.1| hypothetical protein bthur0007_51670 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229094437|ref|ZP_04225509.1| hypothetical protein bcere0021_51420 [Bacillus cereus Rock3-42] gi|229124829|ref|ZP_04254007.1| hypothetical protein bcere0016_51090 [Bacillus cereus 95/8201] gi|229142067|ref|ZP_04270592.1| hypothetical protein bcere0013_51530 [Bacillus cereus BDRD-ST26] gi|229199451|ref|ZP_04326114.1| hypothetical protein bcere0001_49500 [Bacillus cereus m1293] gi|229600982|ref|YP_002869540.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0248] gi|254686252|ref|ZP_05150111.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. CNEVA-9066] gi|254724247|ref|ZP_05186031.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A1055] gi|254735253|ref|ZP_05192962.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. Western North America USA6153] gi|254755794|ref|ZP_05207826.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. Vollum] gi|254762134|ref|ZP_05213980.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. Australia 94] gi|30260026|gb|AAP29211.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. Ames] gi|47552116|gb|AAT34711.2| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49182087|gb|AAT57463.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. Sterne] gi|49331969|gb|AAT62615.1| sua5/yciO/yrdC/ywlC family protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51973706|gb|AAU15256.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus E33L] gi|164712919|gb|EDR18447.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0488] gi|170125724|gb|EDS94638.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0389] gi|170667878|gb|EDT18630.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0465] gi|172082574|gb|EDT67638.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0174] gi|206743290|gb|EDZ54738.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus H3081.97] gi|217063465|gb|ACJ77715.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus AH187] gi|218539161|gb|ACK91559.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus AH820] gi|227004860|gb|ACP14603.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. CDC 684] gi|228584027|gb|EEK42182.1| hypothetical protein bcere0001_49500 [Bacillus cereus m1293] gi|228641356|gb|EEK97662.1| hypothetical protein bcere0013_51530 [Bacillus cereus BDRD-ST26] gi|228658620|gb|EEL14282.1| hypothetical protein bcere0016_51090 [Bacillus cereus 95/8201] gi|228688974|gb|EEL42801.1| hypothetical protein bcere0021_51420 [Bacillus cereus Rock3-42] gi|228810619|gb|EEM56968.1| hypothetical protein bthur0007_51670 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228829319|gb|EEM74952.1| hypothetical protein bthur0010_50120 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228841731|gb|EEM86842.1| hypothetical protein bthur0012_51350 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229265390|gb|ACQ47027.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0248] Length = 346 Score = 362 bits (931), Expect = 3e-98, Method: Composition-based stats. Identities = 113/326 (34%), Positives = 168/326 (51%), Gaps = 19/326 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 L++A + L IA PTETVYGL ++ N AI +++E K RP+ NPLI H+ S + Sbjct: 20 QLQEAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQL 79 Query: 71 KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + P++ L + FWPGPLT++L I TA L T R+P LI Sbjct: 80 DGIVKEIPPVAEKLMEHFWPGPLTIILPRKEG--ISEKVTAGLHTVGVRMPDHPVALALI 137 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E P+A PSANRSG+ S T H+ + ++I I+DGG + +G+EST+++ Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVY-EDLNEKIAGIVDGGATGVGVESTVIDCTSAVP 196 Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV--------RL 238 ILRPGG+ E L+ I V L+ + DE P+SPGM +HYAP++ + + Sbjct: 197 -TILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255 Query: 239 RAIHVNPREALIRFGNVPIKN---IENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 + + +E + G + + I NA + L+ L A L++ ++ D S Sbjct: 256 QRLVDEKKEEGFKVGVLTTEEYHHIYNADVVLSCGVRSDLASVATKLYDVLRTFDASEVD 315 Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321 I S PN G+G AI NRL +AA Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAGH 341 >gi|315230833|ref|YP_004071269.1| YrdC/Sua5 protein [Thermococcus barophilus MP] gi|315183861|gb|ADT84046.1| putative YrdC/Sua5 protein [Thermococcus barophilus MP] Length = 341 Score = 362 bits (931), Expect = 4e-98, Method: Composition-based stats. Identities = 116/332 (34%), Positives = 174/332 (52%), Gaps = 23/332 (6%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D+ ++ A +F+ G +A PTETVYGL D+ N A+RR++E K RPA NPLI H++ Sbjct: 12 DNRKIKIAAKFIREGKLVAFPTETVYGLGADALNEKAVRRIFEAKGRPADNPLIVHIARF 71 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + + A +V + LA+ FWPGPLT+VL ++ +T L T R+P Sbjct: 72 EQLYELARNVPREAEILAEHFWPGPLTIVLP--KKDNVPKTTTGGLDTVAIRMPAHEIAL 129 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LI+ G P+A PSAN SG+ S T +H++ I IIDGG KIG+EST++++ Sbjct: 130 NLIKASGRPIAAPSANISGKPSPTLAEHVV-DDFYGRIECIIDGGEVKIGVESTVLDLTT 188 Query: 186 EKKVRILRPGGLEIETLKRAIS-VELEYCVDET--STPQSPGMLKSHYAPRSQVRLRAIH 242 K +LRPGGL +E ++R I +++ V ++PGM HYAP +QV + + Sbjct: 189 -KPPTLLRPGGLPLEEIERIIGRIKIHPAVKGKTVDIAKAPGMKYKHYAPNAQVIVIEGN 247 Query: 243 VNP------------REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD 290 ++ I+ G + + A +NL +E A NLF ++ D Sbjct: 248 REKVKEKIKELLKEYKKRGIKVGIMATGDFYEADAYVNLG--NSEEEVAKNLFRALRELD 305 Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 SG I I GLG+A+ NRL +AA + Sbjct: 306 KSGVDVILAEGIEEKGLGLAVMNRLRKAAGYK 337 >gi|301056793|ref|YP_003795004.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis CI] gi|300378962|gb|ADK07866.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus biovar anthracis str. CI] Length = 346 Score = 362 bits (931), Expect = 4e-98, Method: Composition-based stats. Identities = 113/326 (34%), Positives = 168/326 (51%), Gaps = 19/326 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 L++A + L IA PTETVYGL ++ N AI +++E K RP+ NPLI H+ S + Sbjct: 20 QLQEAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQL 79 Query: 71 KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + P++ L + FWPGPLT++L I TA L T R+P LI Sbjct: 80 DGIVKEIPPVAEKLMEHFWPGPLTIILPRKEG--ISEKVTAGLHTVGVRMPDHPVALALI 137 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E P+A PSANRSG+ S T H+ + ++I I+DGG + +G+EST+++ Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVY-EDLNEKIAGIVDGGATGVGVESTVIDCTSAVP 196 Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV--------RL 238 ILRPGG+ E L+ I V L+ + DE P+SPGM +HYAP++ + + Sbjct: 197 -TILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255 Query: 239 RAIHVNPREALIRFGNVPIKN---IENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 + + +E + G + + I NA + L+ L A L++ ++ D S Sbjct: 256 QRLVDEKKEEGFKVGVLTTEEYHHIHNADVVLSCGVRSDLASVATKLYDVLRTFDASEVD 315 Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321 I S PN G+G AI NRL +AA Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAGH 341 >gi|229087815|ref|ZP_04219931.1| hypothetical protein bcere0022_43720 [Bacillus cereus Rock3-44] gi|228695490|gb|EEL48359.1| hypothetical protein bcere0022_43720 [Bacillus cereus Rock3-44] Length = 347 Score = 362 bits (931), Expect = 4e-98, Method: Composition-based stats. Identities = 111/329 (33%), Positives = 164/329 (49%), Gaps = 19/329 (5%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L++A L IA PTETVYGL ++ N AI +++E K RP+ NPLI H+ Sbjct: 17 DYPQLQEAARLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGAR 76 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 S + + + P++ L K FWPGPLT++L I TA L T R+P Sbjct: 77 SQLGEIVREITPVAEELMKHFWPGPLTIILP--KKDGISEKVTAGLDTVGVRMPDHPVAL 134 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LIE P+A PSANRSG+ S T H+ + ++I I+DGG + +G+EST+V+ Sbjct: 135 ALIEAANVPVAAPSANRSGRPSPTLAHHVY-EDLNEKIAGIVDGGATGVGVESTVVDCTS 193 Query: 186 EKKVRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 E ILRPGG+ E L+ I + DE P++PGM +HYAP++ + + Sbjct: 194 EVP-TILRPGGITKEQLEEVIGIVSLDPALKDEKEKPKAPGMKYTHYAPKAPLSIVEGSR 252 Query: 244 NPREALIR-----------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDS 292 + + L+ +++ A + L+ L A L++ ++ D S Sbjct: 253 DFIQQLVDKKKEEGYTVGVLTTEEYQHVYKADVVLSCGVRSDLASVATKLYDVLRTFDAS 312 Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAAP 321 I S PN G+G AI NRL +AA Sbjct: 313 EVDVIFSESFPNEGIGNAIMNRLTKAAGH 341 >gi|229158887|ref|ZP_04286944.1| hypothetical protein bcere0010_50590 [Bacillus cereus ATCC 4342] gi|228624498|gb|EEK81268.1| hypothetical protein bcere0010_50590 [Bacillus cereus ATCC 4342] Length = 347 Score = 362 bits (931), Expect = 4e-98, Method: Composition-based stats. Identities = 112/332 (33%), Positives = 172/332 (51%), Gaps = 19/332 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 L++A + L IA PTETVYGL ++ N AI +++E K RP+ NPLI H+ S + Sbjct: 20 QLQEAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQL 79 Query: 71 KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + P++ L + FWPGPLT++L I TA L T R+P LI Sbjct: 80 DGIVKEIPPVAEKLMEHFWPGPLTIILPRKEG--ISERVTAGLNTVGVRMPDHPVALALI 137 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E P+A PSANRSG+ S T H+ + ++I I+DGG + +G+EST+++ Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVY-EDLNEKIAGIVDGGATGVGVESTVIDCTSAVP 196 Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV--------RL 238 ILRPGG+ E L+ I V L+ + DE P+SPGM +HYAP++ + + Sbjct: 197 -TILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255 Query: 239 RAIHVNPREALIRFGNV---PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 + I +E + G + +++ +A + L+ L A L++ ++ D S Sbjct: 256 QLIVDKKKEEGFKVGVLTTEEYQHVYSADVVLSCGVRSDLASVATKLYDVLRTFDASEVD 315 Query: 296 SIAFSSIPNHGLGIAINNRLERAAAPRNQSQR 327 I S PN G+G AI NRL +AA + ++ Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAGHQIITES 347 >gi|229033958|ref|ZP_04188912.1| hypothetical protein bcere0028_49880 [Bacillus cereus AH1271] gi|228728384|gb|EEL79406.1| hypothetical protein bcere0028_49880 [Bacillus cereus AH1271] Length = 346 Score = 362 bits (930), Expect = 4e-98, Method: Composition-based stats. Identities = 111/331 (33%), Positives = 172/331 (51%), Gaps = 19/331 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 L++A + L IA PTETVYGL ++ N AI +++E K RP+ NPLI H+ S + Sbjct: 20 QLQEAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQL 79 Query: 71 KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + P++ L + FWPGPLT++L I TA L T R+P LI Sbjct: 80 DVIVKEIPPVAEKLMEHFWPGPLTIILPRKEG--ISEKVTAGLNTVGVRMPDHPVALALI 137 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E P+A PSANRSG+ S T H+ + ++I I+DGG + +G+EST+++ Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVY-EDLNEKIAGIVDGGATGVGVESTVIDCTSAVP 196 Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV--------RL 238 ILRPGG+ E L+ I V L+ + DE P+SPGM +HYAP++ + + Sbjct: 197 -TILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255 Query: 239 RAIHVNPREALIRFGNV---PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 + + +E + G + +++ +A + L+ L A L++ ++ D S Sbjct: 256 QRLVDEKKEEGFKVGVLTTEEYQHVYSADVVLSCGVRSDLASVATKLYDVLRTFDASEVD 315 Query: 296 SIAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326 I S PN G+G AI NRL +AA + ++ Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAGHQIITE 346 >gi|118480360|ref|YP_897511.1| translation factor SUA5 [Bacillus thuringiensis str. Al Hakam] gi|196042389|ref|ZP_03109654.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus NVH0597-99] gi|118419585|gb|ABK88004.1| translation factor SUA5 [Bacillus thuringiensis str. Al Hakam] gi|196026781|gb|EDX65423.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus NVH0597-99] Length = 346 Score = 362 bits (930), Expect = 4e-98, Method: Composition-based stats. Identities = 113/326 (34%), Positives = 168/326 (51%), Gaps = 19/326 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 L++A + L IA PTETVYGL ++ N AI +++E K RP+ NPLI H+ S + Sbjct: 20 QLQEAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQL 79 Query: 71 KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + P++ L + FWPGPLT++L I TA L T R+P LI Sbjct: 80 DGIVKEIPPVAEKLMEHFWPGPLTIILPRKEG--ISEKVTAGLHTVGVRMPDHPVALALI 137 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E P+A PSANRSG+ S T H+ + ++I I+DGG + +G+EST+++ Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVY-EDLNEKIAGIVDGGATGVGVESTVIDCTSAVP 196 Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV--------RL 238 ILRPGG+ E L+ I V L+ + DE P+SPGM +HYAP++ + + Sbjct: 197 -TILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVKGSREFI 255 Query: 239 RAIHVNPREALIRFGNVPIKN---IENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 + + +E + G + + I NA + L+ L A L++ ++ D S Sbjct: 256 QRLVDEKKEEGFKVGVLTTEEYHHIYNADVVLSCGVRSDLASIATKLYDVLRTFDASEVD 315 Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321 I S PN G+G AI NRL +AA Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAGH 341 >gi|288554403|ref|YP_003426338.1| sua5/yciO/yrdC/ywlC family protein [Bacillus pseudofirmus OF4] gi|288545563|gb|ADC49446.1| sua5/yciO/yrdC/ywlC family protein [Bacillus pseudofirmus OF4] Length = 346 Score = 362 bits (930), Expect = 4e-98, Method: Composition-based stats. Identities = 107/340 (31%), Positives = 166/340 (48%), Gaps = 22/340 (6%) Query: 1 MQIMSITDSNA----LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56 + I D + + A ++ G +A PTETVYGL ++ + AI +++E K RP+ Sbjct: 9 FNVDKINDEDKKREYISDAALWISEGEVVAFPTETVYGLGANALDEKAIAKIFEAKGRPS 68 Query: 57 MNPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115 NPLI H+++ + + + P + L + FWPGPLT++ I P TA L T Sbjct: 69 DNPLIVHIANRDQLSELVTEITPAAEKLMEAFWPGPLTIIF--KKKGPIAPNVTAGLDTV 126 Query: 116 CFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174 R+P KLI+ P+A PSAN SG+ S T H+ + I ++DGG + + Sbjct: 127 AIRMPSHPLALKLIKAANVPVAAPSANLSGKPSPTTAAHVY-HDLQGRIAGVVDGGSTGV 185 Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCVDETS-TPQSPGMLKSHYAP 232 GLEST+++ + RPGG+ IE LK + V ++ + T P+SPGM +HYAP Sbjct: 186 GLESTVLDCSV-HPPMLYRPGGVTIEELKEVVGEVAVDPSLKNTEDAPRSPGMKYTHYAP 244 Query: 233 RSQV-------RLRAIHVNPREALIRFGNVPIKN---IENAIISLNLSKTGKLKEAAFNL 282 + + R++A+ RE + G + + A + L A L Sbjct: 245 KGSLTLVHDVSRIQALLDEAREQGKKVGVLTTEERAAEYKADTVIACGAREDLSTVAAKL 304 Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 + ++ D I + PN G+G AI NRLE+AA R Sbjct: 305 YEALRQFDQENVDVIYSETFPNEGVGAAIMNRLEKAAGGR 344 >gi|222085082|ref|YP_002543612.1| translation factor sua5 protein [Agrobacterium radiobacter K84] gi|221722530|gb|ACM25686.1| translation factor sua5 protein [Agrobacterium radiobacter K84] Length = 324 Score = 362 bits (930), Expect = 4e-98, Method: Composition-based stats. Identities = 165/303 (54%), Positives = 213/303 (70%), Gaps = 2/303 (0%) Query: 21 AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80 GLPI +PTETVYGLA D+ NP AI R+YE K RP NPLICH+SD++M +++A DP+S Sbjct: 24 EGLPIGLPTETVYGLAADATNPAAITRIYETKGRPRFNPLICHMSDLAMAERYAIFDPVS 83 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSA 140 LA+ FWPGPLTLVL L +DIHPL+TA L T R+P GF +LI +G PLA PSA Sbjct: 84 RKLAEAFWPGPLTLVLPLRPESDIHPLATAGLDTVGIRIPQGFAGELIRAFGRPLAAPSA 143 Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200 N SG+IS T+ H+ + + I LI+D G S +G+ESTIV V+ ++R+LRPGGL + Sbjct: 144 NTSGKISATSADHV-HDDLGERISLILDAGASVVGVESTIVKVE-HGEMRLLRPGGLAAD 201 Query: 201 TLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNI 260 ++R L+ ++ ++PGML SHYAP + VRL A V+ EALIRFG I I Sbjct: 202 EIERVAGQSLKRKNGASAAIEAPGMLASHYAPGAAVRLDATAVSSGEALIRFGKPDIAGI 261 Query: 261 ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 E A + L+LS +G L EAA NLF++MK AD SGA++IAFSSIP+ GLG AIN+RL+RAAA Sbjct: 262 ETAAVVLDLSPSGDLAEAAANLFDFMKRADASGAATIAFSSIPDEGLGEAINDRLQRAAA 321 Query: 321 PRN 323 PR Sbjct: 322 PRE 324 >gi|228936610|ref|ZP_04099404.1| hypothetical protein bthur0009_50450 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228823045|gb|EEM68883.1| hypothetical protein bthur0009_50450 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 346 Score = 362 bits (930), Expect = 4e-98, Method: Composition-based stats. Identities = 113/326 (34%), Positives = 168/326 (51%), Gaps = 19/326 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 L++A + L IA PTETVYGL ++ N AI +++E K RP+ NPLI H+ S + Sbjct: 20 QLQEAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQL 79 Query: 71 KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + P++ L + FWPGPLT++L I TA L T R+P LI Sbjct: 80 DGIVKEIPPVAEKLMEHFWPGPLTIILPRKEG--ISEKVTAGLHTVGVRMPDHPVALALI 137 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E P+A PSANRSG+ S T H+ + ++I I+DGG + +G+EST+++ Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVY-EDLNEKIAGIVDGGATGVGVESTVIDCTSAVP 196 Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV--------RL 238 ILRPGG+ E L+ I V L+ + DE P+SPGM +HYAP++ + + Sbjct: 197 -TILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255 Query: 239 RAIHVNPREALIRFGNVPIKN---IENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 + + +E + G + + I NA + L+ L A L++ ++ D S Sbjct: 256 QRLVDEKKEEGFKVGVLTTEEYHHIYNADVVLSCGVRSDLASIATKLYDVLRTFDASEVD 315 Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321 I S PN G+G AI NRL +AA Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAGH 341 >gi|116873906|ref|YP_850687.1| Sua5/YciO/YrdC/YwlC family protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742784|emb|CAK21908.1| Sua5/YciO/YrdC/YwlC family protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 345 Score = 362 bits (929), Expect = 5e-98, Method: Composition-based stats. Identities = 118/339 (34%), Positives = 181/339 (53%), Gaps = 23/339 (6%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 +++ + ++A + L G +A PTETVYGL D+ N AI+++Y K RP+ NPLI H++ Sbjct: 12 LSNQSIYQEAAKLLQKGECVAFPTETVYGLGADATNQAAIQKIYTAKGRPSDNPLIVHIA 71 Query: 66 DISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 + + P ++ L + FWPGPLTL+L L+ + + +A L T R+P Sbjct: 72 RREQMDQFVESYPPKAIQLMEKFWPGPLTLILPLIKDS-LAANVSAGLSTVGVRMPEHPV 130 Query: 125 -KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 LI+T P+A PSANRSG+ S T H++ + +I IIDGG + +GLEST+++ Sbjct: 131 SLDLIKTANIPVAAPSANRSGKPSPTTAAHVI-EDLDGKIAGIIDGGPTGVGLESTVIDC 189 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVD---ETSTPQSPGMLKSHYAPRSQVRLRA 240 E V ILRPGG+ E ++R I ++ + ET P++PGM +HYAP++ V L Sbjct: 190 SQETPV-ILRPGGITKEQIERVIG-PVKVATNSTTETEQPKAPGMKYTHYAPKAPVYLIE 247 Query: 241 IHVNPREALI--------RFGNVPIKNI-----ENAIISLNLSKTGKLKEAAFNLFNYMK 287 ++ I + G + K + NA+I T L+E A +L+N ++ Sbjct: 248 GSAKFWQSEIDKVEAAHKKLGILATKELTSSLSTNAVIQTT-GSTRALEEVATSLYNGLR 306 Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326 D + I P LG AI NRLE+AA R S+ Sbjct: 307 AFDHADVDVIFAEVYPETELGAAIMNRLEKAAGNRRISE 345 >gi|15616333|ref|NP_244638.1| hypothetical protein BH3771 [Bacillus halodurans C-125] gi|10176395|dbj|BAB07490.1| BH3771 [Bacillus halodurans C-125] Length = 348 Score = 362 bits (929), Expect = 6e-98, Method: Composition-based stats. Identities = 105/333 (31%), Positives = 177/333 (53%), Gaps = 18/333 (5%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 +SN +++A ++ G +A+PTETVYGL ++ + A+++++ K RP+ NPLI H+S Sbjct: 20 NSNEIKEAALWIKKGELVALPTETVYGLGANALSDEAVQKIFIAKGRPSDNPLIVHISRK 79 Query: 68 SMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + + S P S + L FWPGPLT++ ++ + TA L T R+P + Sbjct: 80 EQLLRLVSHIPDSANLLINAFWPGPLTIIFP--KGEEVSTVVTAGLDTVAVRMPSHPVAQ 137 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LIE P+A PSANRSG+ S T+ H+L + + +I ++DGG + G+EST+++ Sbjct: 138 ALIEAANVPIAAPSANRSGKPSPTSATHVL-ADLRGKIAGVVDGGPTAEGVESTVIDCTT 196 Query: 186 EKKVRILRPGGLEIETLKRAIS-VELEYC-VDETSTPQSPGMLKSHYAPRSQVRLRAIH- 242 + + RPGG+ E L+ + + ++ + + P+SPGM +HYAP ++ L Sbjct: 197 TPPI-LYRPGGVTREQLEAVLGPIRIDPALLGKDEQPKSPGMKYTHYAPEGELTLVENQA 255 Query: 243 ------VNPREALIRFGNVPI---KNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293 RE + G + K +A + L++ L E A NL++ ++ D+ Sbjct: 256 AIQTFVDKWREKQFKVGIMATDEHKQDYDADVILSVGSRNDLAEVAHNLYHVLRQFDEQK 315 Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326 I + P G+G+AI NRLE+AA R + Sbjct: 316 VDVIIGETFPREGIGVAIMNRLEKAAGGRIIQR 348 >gi|86356545|ref|YP_468437.1| translation factor sua5 protein [Rhizobium etli CFN 42] gi|86280647|gb|ABC89710.1| probable translation factor sua5 protein [Rhizobium etli CFN 42] Length = 336 Score = 362 bits (929), Expect = 6e-98, Method: Composition-based stats. Identities = 168/319 (52%), Positives = 211/319 (66%), Gaps = 2/319 (0%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 + AL AC L G IA+PTETVYGLA D+ NP AI R+YE K RP NPLICH Sbjct: 17 IRADRQTALEAACAALSDGFAIAMPTETVYGLAADATNPAAITRIYETKGRPRFNPLICH 76 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 ++D+ M ++HA DP+S LA+ FWPGPLTLVL L + + IH L+TA L + RVP GF Sbjct: 77 MADLEMAEQHAEFDPVSRALAEAFWPGPLTLVLPLKAESPIHALATAGLDSVGVRVPKGF 136 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 LI +G PLA PSAN SG IS T+ H+ + + +IPLI+D G S +G+ESTIV V Sbjct: 137 AGTLIGAFGRPLAAPSANTSGAISATSAAHV-EADLGAKIPLILDAGPSTVGVESTIVKV 195 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 + + +VR+LRPGGL ++R L ++ ++PGML SHYAP + VRL A V Sbjct: 196 EGD-RVRLLRPGGLAAREIERIAGRPLLRAKKASAAIEAPGMLASHYAPGASVRLNASAV 254 Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303 P EALI FG ++ +A I L+LS G L EAA NLF+YMK AD SG SSIAFS IP Sbjct: 255 EPGEALIAFGGAVVEGARDARIVLDLSPRGDLAEAAANLFDYMKRADASGVSSIAFSPIP 314 Query: 304 NHGLGIAINNRLERAAAPR 322 + GLG AIN+RL+RAAAPR Sbjct: 315 DDGLGEAINDRLQRAAAPR 333 >gi|225867306|ref|YP_002752684.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus 03BB102] gi|229187551|ref|ZP_04314691.1| hypothetical protein bcere0004_50840 [Bacillus cereus BGSC 6E1] gi|225785999|gb|ACO26216.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus 03BB102] gi|228595918|gb|EEK53598.1| hypothetical protein bcere0004_50840 [Bacillus cereus BGSC 6E1] Length = 346 Score = 361 bits (928), Expect = 7e-98, Method: Composition-based stats. Identities = 112/326 (34%), Positives = 168/326 (51%), Gaps = 19/326 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 L++A + L IA PTETVYGL ++ N AI +++E K RP+ NPLI H+ S + Sbjct: 20 QLQEAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQL 79 Query: 71 KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + P++ L + FWPGPLT++L I TA L T R+P LI Sbjct: 80 DGIVKEIPPVAEKLMEHFWPGPLTIILPRKEG--ISEKVTAGLHTVGVRMPDHPVALALI 137 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E P+A PSANRSG+ S T H+ + ++I I+DGG + +G+EST+++ Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVY-EDLNEKIAGIVDGGATGVGVESTVIDCTSAVP 196 Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV--------RL 238 ILRPGG+ E L+ I V L+ + DE P+SPGM +HYAP++ + + Sbjct: 197 -TILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVKGSREFI 255 Query: 239 RAIHVNPREALIRFGNVPIKN---IENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 + + +E + G + + I NA + L+ L A L++ ++ D S Sbjct: 256 QRLVDEKKEEGFKVGVLTTEEYHHIYNADVVLSCGVRSDLASVATKLYDVLRTFDASEVD 315 Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321 I S P+ G+G AI NRL +AA Sbjct: 316 VIFSESFPSEGIGNAIMNRLTKAAGH 341 >gi|218900451|ref|YP_002448862.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus G9842] gi|228968453|ref|ZP_04129442.1| hypothetical protein bthur0004_52280 [Bacillus thuringiensis serovar sotto str. T04001] gi|218543168|gb|ACK95562.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus G9842] gi|228791233|gb|EEM38846.1| hypothetical protein bthur0004_52280 [Bacillus thuringiensis serovar sotto str. T04001] Length = 346 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 110/326 (33%), Positives = 167/326 (51%), Gaps = 19/326 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 L++A + L +A PTETVYGL ++ + AI +++E K RP+ NPLI H+ S + Sbjct: 20 QLQEAAKLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQL 79 Query: 71 KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + P++ L FWPGPLT++L I TA L T R+P LI Sbjct: 80 DGIVKEIPPVAEKLMAHFWPGPLTIILPRKEG--ISERVTAGLNTVGVRMPDHPVALALI 137 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E P+A PSANRSG+ S T H+ + +I I+DGG + +G+EST+++ Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVIDCTSTVP 196 Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV--------RL 238 ILRPGG+ E L+ I V L+ + DE P+SPGM +HYAP++ + + Sbjct: 197 -TILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255 Query: 239 RAIHVNPREALIRFGNV---PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 + + +E + G + +++ NA + L+ L A L++ ++ D S Sbjct: 256 QQLVDEKKEEGFKVGVLTTEEYQHVYNADVILSCGVRSDLASVATKLYDVLRTFDASEVD 315 Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321 I S PN G+G AI NRL +AA Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAGH 341 >gi|297531575|ref|YP_003672850.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus sp. C56-T3] gi|297254827|gb|ADI28273.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus sp. C56-T3] Length = 355 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 118/331 (35%), Positives = 176/331 (53%), Gaps = 17/331 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 +R+A E+L AG IA PTETVYGL D+ N A+ +++ K RP+ NPLI HV+ ++ Sbjct: 26 QIREAVEWLRAGEVIAFPTETVYGLGADAANTAAVEKIFAAKGRPSDNPLIVHVASMAQA 85 Query: 71 KKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + AS+ P++ L + FWPGPLTLVL + + TA L T R+P LI Sbjct: 86 EAVAASIPPMAKTLMERFWPGPLTLVLPKRAKA-VSERVTAGLPTVAVRMPDHPLALALI 144 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E G LA PSANRSG+ S T H+L + + I +IDGG + +G+EST+++ Sbjct: 145 EASGLALAAPSANRSGRPSPTTAAHVL-ADLDGRIAGVIDGGPTGVGVESTVLDCSGGVP 203 Query: 189 VRILRPGGLEIETLKRAIS-VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA------- 240 ILRPGG+ E L AI VE VD+ + P++PGM +HYAP++ + + A Sbjct: 204 -TILRPGGVTKEALIEAIGRVEEAAAVDDEAAPKAPGMKYTHYAPKAPLWIVAGPPAFLQ 262 Query: 241 -IHVNPREALIRFGNVPIKNIEN---AIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296 + R G + + + A + L L+ A L++ ++ D++ Sbjct: 263 RLVDESRAEGKTVGVLTTEENRDQYAADVVLPCGTRQALETVASRLYDTLRRFDETNVDL 322 Query: 297 IAFSSIPNHGLGIAINNRLERAAAPRNQSQR 327 I + P G+G AI NRL +AA R S++ Sbjct: 323 IYSEAFPEEGIGAAIMNRLRKAAGGRAISEQ 353 >gi|75762684|ref|ZP_00742523.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228903800|ref|ZP_04067916.1| hypothetical protein bthur0014_49550 [Bacillus thuringiensis IBL 4222] gi|74489830|gb|EAO53207.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228855827|gb|EEN00371.1| hypothetical protein bthur0014_49550 [Bacillus thuringiensis IBL 4222] Length = 346 Score = 360 bits (926), Expect = 1e-97, Method: Composition-based stats. Identities = 110/326 (33%), Positives = 167/326 (51%), Gaps = 19/326 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 L++A + L +A PTETVYGL ++ + AI +++E K RP+ NPLI H+ S + Sbjct: 20 QLQEAAKLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQL 79 Query: 71 KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + P++ L FWPGPLT++L I TA L T R+P LI Sbjct: 80 DGIVKEIPPVAEKLMAHFWPGPLTIILPRKEG--ISERVTAGLNTVGVRMPDHPVALALI 137 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E P+A PSANRSG+ S T H+ + +I I+DGG + +G+EST+++ Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVIDCTSTVP 196 Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV--------RL 238 ILRPGG+ E L+ I V L+ + DE P+SPGM +HYAP++ + + Sbjct: 197 -TILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255 Query: 239 RAIHVNPREALIRFGNV---PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 + + +E + G + +++ NA + L+ L A L++ ++ D S Sbjct: 256 QQLVDEKKEEGFKVGVLTTEEYQHVYNADVILSCGVRSDLASVATKLYDVLRTFDASEVD 315 Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321 I S PN G+G AI NRL +AA Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAGH 341 >gi|154505651|ref|ZP_02042389.1| hypothetical protein RUMGNA_03190 [Ruminococcus gnavus ATCC 29149] gi|153794090|gb|EDN76510.1| hypothetical protein RUMGNA_03190 [Ruminococcus gnavus ATCC 29149] Length = 523 Score = 360 bits (926), Expect = 1e-97, Method: Composition-based stats. Identities = 110/336 (32%), Positives = 168/336 (50%), Gaps = 25/336 (7%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 D +A+R+A E L G +A PTETVYGL ++ + A ++ YE K RP+ NPLI H++D Sbjct: 26 IDEDAIREAGEILREGGLVAFPTETVYGLGANALDEEAAKKTYEAKGRPSDNPLIVHIAD 85 Query: 67 ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 + + + V P + LAK FWPGPLT++ + ++ + +T L T R+P Sbjct: 86 LEDLSEITENVPPETELLAKHFWPGPLTMIFE--KSSLVPYGTTGGLDTVAVRMPSDLIA 143 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 +KLI G ++ PSAN SG+ S T +H+ + +I +IIDGG IGLESTI+++ Sbjct: 144 RKLILAAGGYVSAPSANTSGRPSPTTAEHVW-EDLNGKIEMIIDGGSVDIGLESTILDMT 202 Query: 185 CEKKVRILRPGGLEIETLKRAISV----ELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 + ILRPG + + L+ I V E + + P++PGM HYAP++++ + Sbjct: 203 VSPPM-ILRPGAITADMLEEVIGVVSVDETILGSESSQAPKAPGMKYRHYAPKAKLTIVE 261 Query: 241 IHVNPREALIR---------------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNY 285 + IR G + N+ K A NL+ Sbjct: 262 GSLKEEVFAIRQLAYEKSRQGVQVGIIGTNETVEFYTHGLVKNIGSRENEKTIARNLYRI 321 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 ++ D+ S I S G+G AI NRLE+AA Sbjct: 322 LREFDEEDVSEIYSESFAIQGIGNAIMNRLEKAAGH 357 >gi|56421910|ref|YP_149228.1| hypothetical protein GK3375 [Geobacillus kaustophilus HTA426] gi|56381752|dbj|BAD77660.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] Length = 349 Score = 360 bits (926), Expect = 1e-97, Method: Composition-based stats. Identities = 118/331 (35%), Positives = 176/331 (53%), Gaps = 17/331 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 +R+A E+L AG IA PTETVYGL D+ N A+ +++ K RP+ NPLI HV+ ++ Sbjct: 20 QIREAVEWLRAGEVIAFPTETVYGLGADAANTAAVEKIFAAKGRPSDNPLIVHVASMAQA 79 Query: 71 KKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + AS+ P++ L + FWPGPLTLVL + + TA L T R+P LI Sbjct: 80 EAVAASIPPMAKTLMERFWPGPLTLVLPKRAKA-VSERVTAGLPTVAVRMPDHPLALALI 138 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E G LA PSANRSG+ S T H+L + + I +IDGG + +G+EST+++ Sbjct: 139 EASGLALAAPSANRSGRPSPTTAAHVL-ADLDGRIAGVIDGGPTGVGVESTVLDCSGGVP 197 Query: 189 VRILRPGGLEIETLKRAIS-VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA------- 240 ILRPGG+ E L AI VE VD+ + P++PGM +HYAP++ + + A Sbjct: 198 -TILRPGGVTKEALIEAIGRVEEAAAVDDEAAPKAPGMKYTHYAPKAPLWIVAGPPAFLQ 256 Query: 241 -IHVNPREALIRFGNVPIKNIEN---AIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296 + R G + + + A + L L+ A L++ ++ D++ Sbjct: 257 RLVDESRAEGKTVGVLTTEENRDQYAADVVLPCGTRQALETVASRLYDTLRRFDETNVDL 316 Query: 297 IAFSSIPNHGLGIAINNRLERAAAPRNQSQR 327 I + P G+G AI NRL +AA R S++ Sbjct: 317 IYSEAFPEEGIGAAIMNRLRKAAGGRAISEQ 347 >gi|291486279|dbj|BAI87354.1| hypothetical protein BSNT_05644 [Bacillus subtilis subsp. natto BEST195] Length = 346 Score = 360 bits (926), Expect = 1e-97, Method: Composition-based stats. Identities = 107/331 (32%), Positives = 172/331 (51%), Gaps = 18/331 (5%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 T+ + +A L +A PTETVYGL +++N A++++YE K RP+ NPLI H++D Sbjct: 16 TNDPQIAQAAALLRENEVVAFPTETVYGLGANAKNTDAVKKIYEAKGRPSDNPLIVHIAD 75 Query: 67 ISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 IS ++ + L K FWPG LTL+L + P TA L T R+P Sbjct: 76 ISQLEDLTGPAPEKAKTLMKRFWPGALTLILPCKPGA-LSPRVTAGLDTVAIRMPDHPLA 134 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 LI G P+A PSAN SG+ S T +H+ + + I I+DGG + IG+EST+++ Sbjct: 135 LALIRESGLPIAAPSANLSGKPSPTKAEHV-AHDLDGRIAGIMDGGPTGIGVESTVLSCA 193 Query: 185 CEKKVRILRPGGLEIETLKRAISV--ELEYCVDETSTPQSPGMLKSHYAPRSQV------ 236 + V +LRPGG+ E ++ I + D+ P SPGM +HYAP + + Sbjct: 194 DDIPV-LLRPGGITKEQIEAVIGPIHVDKGLSDQNEKPISPGMKYTHYAPTAPLAICEGS 252 Query: 237 --RLRAIHVNPREALIRFGNVPIKN---IENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291 R++ + ++ R G + + + +A + + +L+ A L++ ++ D+ Sbjct: 253 PERIQHLIQEYQQGGRRVGVLTTEENAGVYSADYVKSCGRRAQLETVAAGLYDALRSFDE 312 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 + I S P+ G+G+AI NRL +AA R Sbjct: 313 NKVDLIISESFPDTGVGLAIMNRLMKAAGGR 343 >gi|218233574|ref|YP_002370102.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus B4264] gi|218161531|gb|ACK61523.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus B4264] Length = 346 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 108/326 (33%), Positives = 166/326 (50%), Gaps = 19/326 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 L++A + L +A PTETVYGL ++ + AI +++E K RP+ NPLI H+ S + Sbjct: 20 QLQEAAKLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQL 79 Query: 71 KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + P++ L FWPGPLT++L I TA L T R+P LI Sbjct: 80 DGIVTEIPPVAEKLMAHFWPGPLTIILPRKEG--ISEKVTAGLNTVGVRMPDHPIALALI 137 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E P+A PSANRSG+ S T H+ + +I I+DGG + +G+EST+++ Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVIDCTSTVP 196 Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV--------RL 238 ILRPGG+ E L+ I V L+ + DE P+SPGM +HYAP++ + + Sbjct: 197 -TILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255 Query: 239 RAIHVNPREALIRFGNVPIKN---IENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 + + ++ + G + + + +A + L+ L A L++ ++ D S Sbjct: 256 QHLVDEKKKEGFKVGVLTTEEYQYVYSADVILSCGVRSDLASVATKLYDVLRTFDASEVD 315 Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321 I S PN G+G AI NRL +AA Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAGH 341 >gi|228942472|ref|ZP_04105009.1| hypothetical protein bthur0008_51020 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975404|ref|ZP_04135960.1| hypothetical protein bthur0003_51490 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228982041|ref|ZP_04142334.1| hypothetical protein bthur0002_51990 [Bacillus thuringiensis Bt407] gi|228777705|gb|EEM25979.1| hypothetical protein bthur0002_51990 [Bacillus thuringiensis Bt407] gi|228784386|gb|EEM32409.1| hypothetical protein bthur0003_51490 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817214|gb|EEM63302.1| hypothetical protein bthur0008_51020 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326943123|gb|AEA19019.1| SUA5 protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 346 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 110/326 (33%), Positives = 167/326 (51%), Gaps = 19/326 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 L++A + L +A PTETVYGL ++ + AI +++E K RP+ NPLI H+ S + Sbjct: 20 QLQEAAKLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQL 79 Query: 71 KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + P++ L FWPGPLT++L I TA L T R+P LI Sbjct: 80 DGIVKEIPPVAEKLMAHFWPGPLTIILPRKEG--ISERVTAGLNTVGVRMPDHPVALALI 137 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E P+A PSANRSG+ S T H+ + +I I+DGG + +G+EST+++ Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVIDCTSTVP 196 Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV--------RL 238 ILRPGG+ E L+ I V L+ + DE P+SPGM +HYAP++ + + Sbjct: 197 -TILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255 Query: 239 RAIHVNPREALIRFGNV---PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 + + +E + G + +++ NA + L+ L A L++ ++ D S Sbjct: 256 QHLVDEKKEEGFKVGVLTTEEYQHVYNADVILSCGVRSDLASVATKLYDVLRTFDASEVD 315 Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321 I S PN G+G AI NRL +AA Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAGH 341 >gi|229153489|ref|ZP_04281667.1| hypothetical protein bcere0011_50190 [Bacillus cereus m1550] gi|228630093|gb|EEK86744.1| hypothetical protein bcere0011_50190 [Bacillus cereus m1550] Length = 346 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 108/326 (33%), Positives = 166/326 (50%), Gaps = 19/326 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 L++A + L +A PTETVYGL ++ + AI +++E K RP+ NPLI H+ S + Sbjct: 20 QLQEAAKLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQL 79 Query: 71 KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + P++ L FWPGPLT++L I TA L T R+P LI Sbjct: 80 DGIVKEIPPVAEKLMAHFWPGPLTIILPRKEG--ISEKVTAGLNTVGVRMPDHPIALALI 137 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E P+A PSANRSG+ S T H+ + +I I+DGG + +G+EST+++ Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVIDCTSTVP 196 Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV--------RL 238 ILRPGG+ E L+ I V L+ + DE P+SPGM +HYAP++ + + Sbjct: 197 -TILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255 Query: 239 RAIHVNPREALIRFGNVPIKN---IENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 + + ++ + G + + + +A + L+ L A L++ ++ D S Sbjct: 256 QHLVDEKKKEGFKVGVLTTEEYQYVYSADVILSCGVRSDLASVATKLYDVLRTFDASEVD 315 Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321 I S PN G+G AI NRL +AA Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAGH 341 >gi|217963355|ref|YP_002349033.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes HCC23] gi|290892704|ref|ZP_06555696.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes FSL J2-071] gi|217332625|gb|ACK38419.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes HCC23] gi|290557764|gb|EFD91286.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes FSL J2-071] gi|307572068|emb|CAR85247.1| translation factor, SUA5 type [Listeria monocytogenes L99] Length = 345 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 110/336 (32%), Positives = 167/336 (49%), Gaps = 19/336 (5%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 ++ ++A E L G +A PTETVYGL D+ N AI+++Y K RP+ NPLI H++ Sbjct: 13 SNQAIYQEAAELLQNGECVAFPTETVYGLGADATNQAAIQKIYAAKGRPSDNPLIVHIAR 72 Query: 67 ISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT- 124 + + AS P ++ L + FWPGPLT++L L + + +A L T R+P Sbjct: 73 LDQMNSFVASYPPKAIQLMEKFWPGPLTVILPLKKDS-LAANVSAGLSTVGVRMPEHPVS 131 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 LI P+A PSANRSG+ S T H++ + +I IIDGG + +GLEST+++ Sbjct: 132 LALINAANVPVAAPSANRSGKPSPTTADHVI-EDLDGKIAGIIDGGATGVGLESTVIDCS 190 Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYC--VDETSTPQSPGMLKSHYAPRSQVRL---- 238 E + ILRPGG+ E +++ I ET P++PGM +HYAP++ V L Sbjct: 191 LEMPI-ILRPGGITKEQIEQVIGPVDISTNNTKETEKPKAPGMKYTHYAPKAPVYLIEGS 249 Query: 239 --------RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD 290 + ++ I I + + L E A +L+ ++ D Sbjct: 250 TPFWQKEINKVEAANKKLGILATKELIDQLTTSAAVETTGSIKALDEIATSLYKGLRAFD 309 Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326 + I P LG AI NRLE+AA R ++ Sbjct: 310 HADVDIIFAEVYPETELGAAIMNRLEKAAGNRRITE 345 >gi|30023356|ref|NP_834987.1| SUA5 protein [Bacillus cereus ATCC 14579] gi|229112739|ref|ZP_04242272.1| hypothetical protein bcere0018_49780 [Bacillus cereus Rock1-15] gi|229130575|ref|ZP_04259531.1| hypothetical protein bcere0015_50080 [Bacillus cereus BDRD-Cer4] gi|229147866|ref|ZP_04276207.1| hypothetical protein bcere0012_49890 [Bacillus cereus BDRD-ST24] gi|296505750|ref|YP_003667450.1| integral membrane protein [Bacillus thuringiensis BMB171] gi|29898917|gb|AAP12188.1| SUA5 protein [Bacillus cereus ATCC 14579] gi|228635516|gb|EEK92005.1| hypothetical protein bcere0012_49890 [Bacillus cereus BDRD-ST24] gi|228652914|gb|EEL08796.1| hypothetical protein bcere0015_50080 [Bacillus cereus BDRD-Cer4] gi|228670720|gb|EEL26031.1| hypothetical protein bcere0018_49780 [Bacillus cereus Rock1-15] gi|296326802|gb|ADH09730.1| integral membrane protein [Bacillus thuringiensis BMB171] Length = 346 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 108/326 (33%), Positives = 167/326 (51%), Gaps = 19/326 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 L++A + L +A PTETVYGL ++ + AI +++E K RP+ NPLI H+ S + Sbjct: 20 QLQEAAKLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQL 79 Query: 71 KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + P++ L FWPGPLT++L I TA L T R+P LI Sbjct: 80 DGIVKEIPPVAEKLMAHFWPGPLTIILPRKEG--ISEKVTAGLNTVGVRMPDHPIALALI 137 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E P+A PSANRSG+ S T H+ + +I I+DGG + +G+EST+++ Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVIDCTSTVP 196 Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV--------RL 238 ILRPGG+ E L+ I V L+ + DE P+SPGM +HYAP++ + + Sbjct: 197 -TILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255 Query: 239 RAIHVNPREALIRFGNV---PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 + + ++ + G + +++ +A + L+ L A L++ ++ D S Sbjct: 256 QHLVDEKKKEGFKVGVLTTEEYQHVYSADVILSCGVRSDLASVATKLYDVLRTFDASEVD 315 Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321 I S PN G+G AI NRL +AA Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAGH 341 >gi|319768450|ref|YP_004133951.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus sp. Y412MC52] gi|317113316|gb|ADU95808.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus sp. Y412MC52] Length = 355 Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats. Identities = 118/331 (35%), Positives = 176/331 (53%), Gaps = 17/331 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 +R+A E+L AG IA PTETVYGL D+ N A+ +++ K RP+ NPLI HV+ ++ Sbjct: 26 QIREAVEWLRAGEVIAFPTETVYGLGADAANTAAVEKIFAAKGRPSDNPLIVHVASMAQA 85 Query: 71 KKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + AS+ P++ L + FWPGPLTLVL + + TA L T R+P LI Sbjct: 86 EAVAASIPPMAKTLMERFWPGPLTLVLPKRAKA-VSERVTAGLPTVAVRMPDHPLALALI 144 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E G LA PSANRSG+ S T H+L + + I +IDGG + +G+EST+++ Sbjct: 145 EASGLALAAPSANRSGRPSPTTAAHVL-ADLDGRIAGVIDGGPTGVGVESTVLDCSGSVP 203 Query: 189 VRILRPGGLEIETLKRAIS-VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA------- 240 ILRPGG+ E L AI VE VD+ + P++PGM +HYAP++ + + A Sbjct: 204 -TILRPGGVTKEALIEAIGRVEEAAAVDDEAAPKAPGMKYTHYAPKAPLWIVAGPPAFLQ 262 Query: 241 -IHVNPREALIRFGNVPIKNIEN---AIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296 + R G + + + A + L L+ A L++ ++ D++ Sbjct: 263 RLVDESRAEGKTVGVLTTEENRDQYAADVVLPCGTRQALETVASRLYDTLRRFDETNVDL 322 Query: 297 IAFSSIPNHGLGIAINNRLERAAAPRNQSQR 327 I + P G+G AI NRL +AA R S++ Sbjct: 323 IYSEAFPEEGIGAAIMNRLRKAAGGRAISEQ 353 >gi|190890611|ref|YP_001977153.1| translation factor protein [Rhizobium etli CIAT 652] gi|190695890|gb|ACE89975.1| probable translation factor protein [Rhizobium etli CIAT 652] Length = 334 Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats. Identities = 168/320 (52%), Positives = 211/320 (65%), Gaps = 2/320 (0%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 + AL A L G IA+PTETVYGLA D+ NP AI R+YE K RP NPLICH Sbjct: 17 IEADRQAALEAASTALADGFAIAMPTETVYGLAADATNPAAITRIYETKGRPRFNPLICH 76 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 ++D++M + HA+ DPLS LA+ FWPGPLTLVL L + IH L+TA L + RVP GF Sbjct: 77 MADLAMAEHHAAFDPLSRALAEAFWPGPLTLVLPLKPESPIHSLATAGLDSVGVRVPKGF 136 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 LI +G PLA PSAN SG IS T+ H+ + + +IPLI+D G S +G+ESTIV V Sbjct: 137 AGALIGAFGRPLAAPSANTSGAISATSAAHV-EADLGAKIPLILDAGPSAVGVESTIVKV 195 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 + + +VR+LRPGGL ++R L ++ ++PGML SHYAP + VRL A V Sbjct: 196 EGD-RVRLLRPGGLAAREVERVAGRPLLRAKKASAAIEAPGMLASHYAPGASVRLNASAV 254 Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303 P EALI FG ++ +A I L+LS G L EAA NLF+YMK AD SG SSIAFS IP Sbjct: 255 EPGEALIAFGGAAVEGARDARIVLDLSPRGDLAEAAANLFDYMKRADASGVSSIAFSPIP 314 Query: 304 NHGLGIAINNRLERAAAPRN 323 + GLG AIN+RL+RAAAPR+ Sbjct: 315 DDGLGEAINDRLQRAAAPRD 334 >gi|229050996|ref|ZP_04194545.1| hypothetical protein bcere0027_49490 [Bacillus cereus AH676] gi|228722373|gb|EEL73769.1| hypothetical protein bcere0027_49490 [Bacillus cereus AH676] Length = 346 Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats. Identities = 108/326 (33%), Positives = 167/326 (51%), Gaps = 19/326 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 L++A + L +A PTETVYGL ++ + AI +++E K RP+ NPLI H+ S + Sbjct: 20 QLQEAAKLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQL 79 Query: 71 KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + P++ L FWPGPLT++L I TA L T R+P LI Sbjct: 80 DGIVKEIPPVAEKLMAHFWPGPLTIILPRKEG--ISEKVTAGLNTVGVRMPDHPIALALI 137 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E P+A PSANRSG+ S T H+ + +I I+DGG + +G+EST+++ Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVIDCTSTVP 196 Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV--------RL 238 ILRPGG+ E L+ I V L+ + DE P+SPGM +HYAP++ + + Sbjct: 197 -TILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255 Query: 239 RAIHVNPREALIRFGNV---PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 + + ++ + G + +++ +A + L+ L A L++ ++ D S Sbjct: 256 QHLVDEKKKEGFKVGVLTTEEYQHVYSADVILSCGVRSDLASVATKLYDVLRTFDASEVD 315 Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321 I S PN G+G AI NRL +AA Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAGH 341 >gi|261420780|ref|YP_003254462.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus sp. Y412MC61] gi|261377237|gb|ACX79980.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus sp. Y412MC61] Length = 349 Score = 359 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 118/331 (35%), Positives = 176/331 (53%), Gaps = 17/331 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 +R+A E+L AG IA PTETVYGL D+ N A+ +++ K RP+ NPLI HV+ ++ Sbjct: 20 QIREAVEWLRAGEVIAFPTETVYGLGADAANTAAVEKIFAAKGRPSDNPLIVHVASMAQA 79 Query: 71 KKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + AS+ P++ L + FWPGPLTLVL + + TA L T R+P LI Sbjct: 80 EAVAASIPPMAKTLMERFWPGPLTLVLPKRAKA-VSERVTAGLPTVAVRMPDHPLALALI 138 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E G LA PSANRSG+ S T H+L + + I +IDGG + +G+EST+++ Sbjct: 139 EASGLALAAPSANRSGRPSPTTAAHVL-ADLDGRIAGVIDGGPTGVGVESTVLDCSGSVP 197 Query: 189 VRILRPGGLEIETLKRAIS-VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA------- 240 ILRPGG+ E L AI VE VD+ + P++PGM +HYAP++ + + A Sbjct: 198 -TILRPGGVTKEALIEAIGRVEEAAAVDDEAAPKAPGMKYTHYAPKAPLWIVAGPPAFLQ 256 Query: 241 -IHVNPREALIRFGNVPIKNIEN---AIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296 + R G + + + A + L L+ A L++ ++ D++ Sbjct: 257 RLVDESRAEGKTVGVLTTEENRDQYAADVVLPCGTRQALETVASRLYDTLRRFDETNVDL 316 Query: 297 IAFSSIPNHGLGIAINNRLERAAAPRNQSQR 327 I + P G+G AI NRL +AA R S++ Sbjct: 317 IYSEAFPEEGIGAAIMNRLRKAAGGRAISEQ 347 >gi|52787618|ref|YP_093447.1| YwlC [Bacillus licheniformis ATCC 14580] gi|52350120|gb|AAU42754.1| YwlC [Bacillus licheniformis ATCC 14580] Length = 349 Score = 359 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 114/331 (34%), Positives = 171/331 (51%), Gaps = 18/331 (5%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 T+ + +A L +A PTETVYGL ++++ A+ ++YE K RP+ NPLI H+++ Sbjct: 18 TNCPQIAQAARLLQQNETVAFPTETVYGLGANAKHSEAVAKIYEAKGRPSDNPLIVHIAE 77 Query: 67 ISMVKKHASVD-PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 I + + A VD P + L K FWPGPLTLVL + TA L T R+P Sbjct: 78 IEQLAEFAEVDSPQAEMLMKRFWPGPLTLVLPCKPGV-LSTRVTAGLDTVAVRMPDHPVA 136 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 +LI G P+A PSAN SG+ S T +H+++ + I ++DGG + +G+EST+V+ Sbjct: 137 LELIRQAGVPVAAPSANLSGKPSPTKAEHVVND-LNGRIAGVVDGGPTGVGVESTVVSCT 195 Query: 185 CEKKVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242 E V ILRPGG+ E L+ A L + DE P SPGM +HYAP + + + Sbjct: 196 GEIPV-ILRPGGVTKEQLEEAAGPVLIDQGLTDEKKAPMSPGMKYTHYAPEAPLAIVNGG 254 Query: 243 VNPREALI--------RFGNVPIKN---IENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291 V + LI + G + + + A + +L+ A L++ ++ D+ Sbjct: 255 VEDIQRLIDQYQKDGMKVGVLTTEERADVYQADAVRICGRRDRLETVAAGLYDVLRSFDE 314 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 I S P G+G AI NRL +AA R Sbjct: 315 ERLDFIFAESFPEEGVGRAIMNRLLKAAGHR 345 >gi|228961589|ref|ZP_04123198.1| hypothetical protein bthur0005_50310 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228798071|gb|EEM45075.1| hypothetical protein bthur0005_50310 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 346 Score = 359 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 108/326 (33%), Positives = 167/326 (51%), Gaps = 19/326 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 L++A + L +A PTETVYGL ++ + AI +++E K RP+ NPLI H+ S + Sbjct: 20 QLQEAAKLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQL 79 Query: 71 KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + P++ L FWPGPLT++L I TA L T R+P LI Sbjct: 80 DGIVKEIPPVAEKLMAHFWPGPLTIILPRKEG--ISENVTAGLNTVGVRMPDHPIAIALI 137 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E P+A PSANRSG+ S T H+ + +I I+DGG + +G+EST+++ Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVIDCTSAVP 196 Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV--------RL 238 ILRPGG+ E L+ I V L+ + DE P+SPGM +HYAP++ + + Sbjct: 197 -TILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255 Query: 239 RAIHVNPREALIRFGNV---PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 + + ++ + G + +++ +A + L+ L A L++ ++ D S Sbjct: 256 QHLVDEKKKEGFKVGVLTTEEYQHVYSADVILSCGVRSDLASVATKLYDVLRTFDASKVD 315 Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321 I S PN G+G AI NRL +AA Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAGH 341 >gi|206970259|ref|ZP_03231212.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus AH1134] gi|228924061|ref|ZP_04087337.1| hypothetical protein bthur0011_50340 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|229072792|ref|ZP_04205991.1| hypothetical protein bcere0025_49520 [Bacillus cereus F65185] gi|229082540|ref|ZP_04215003.1| hypothetical protein bcere0023_51570 [Bacillus cereus Rock4-2] gi|229181573|ref|ZP_04308899.1| hypothetical protein bcere0005_49130 [Bacillus cereus 172560W] gi|229193577|ref|ZP_04320521.1| hypothetical protein bcere0002_52210 [Bacillus cereus ATCC 10876] gi|206734836|gb|EDZ52005.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus AH1134] gi|228589882|gb|EEK47757.1| hypothetical protein bcere0002_52210 [Bacillus cereus ATCC 10876] gi|228601941|gb|EEK59436.1| hypothetical protein bcere0005_49130 [Bacillus cereus 172560W] gi|228700972|gb|EEL53495.1| hypothetical protein bcere0023_51570 [Bacillus cereus Rock4-2] gi|228710283|gb|EEL62258.1| hypothetical protein bcere0025_49520 [Bacillus cereus F65185] gi|228835551|gb|EEM80916.1| hypothetical protein bthur0011_50340 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 346 Score = 359 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 109/326 (33%), Positives = 167/326 (51%), Gaps = 19/326 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 L++A + L +A PTETVYGL ++ + AI +++E K RP+ NPLI H+ S + Sbjct: 20 QLQEAAKLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQL 79 Query: 71 KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + P++ L FWPGPLT++L I TA L T R+P LI Sbjct: 80 DGIVKEIPPVAEKLMAHFWPGPLTIILPRKEG--ISEKVTAGLNTVGVRMPDHPIALALI 137 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E P+A PSANRSG+ S T H+ + +I I+DGG + +G+EST+++ Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVIDCTSAVP 196 Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV--------RL 238 ILRPGG+ E L+ I V L+ + DE P+SPGM +HYAP++ + + Sbjct: 197 -TILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255 Query: 239 RAIHVNPREALIRFGNV---PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 + + +E + G + +++ +A + L+ L A L++ ++ D S Sbjct: 256 QHLVDEKKEEGFKVGVLTTEEYQHVYSADVILSCGVRSDLASVATKLYDVLRTFDASEVD 315 Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321 I S PN G+G AI NRL +AA Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAGH 341 >gi|52082226|ref|YP_081017.1| hypothetical protein BL03986 [Bacillus licheniformis ATCC 14580] gi|319648100|ref|ZP_08002317.1| YwlC protein [Bacillus sp. BT1B_CT2] gi|52005437|gb|AAU25379.1| conserved protein YwlC [Bacillus licheniformis ATCC 14580] gi|317389735|gb|EFV70545.1| YwlC protein [Bacillus sp. BT1B_CT2] Length = 347 Score = 359 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 114/331 (34%), Positives = 171/331 (51%), Gaps = 18/331 (5%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 T+ + +A L +A PTETVYGL ++++ A+ ++YE K RP+ NPLI H+++ Sbjct: 16 TNCPQIAQAARLLQQNETVAFPTETVYGLGANAKHSEAVAKIYEAKGRPSDNPLIVHIAE 75 Query: 67 ISMVKKHASVD-PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 I + + A VD P + L K FWPGPLTLVL + TA L T R+P Sbjct: 76 IEQLAEFAEVDSPQAEMLMKRFWPGPLTLVLPCKPGV-LSTRVTAGLDTVAVRMPDHPVA 134 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 +LI G P+A PSAN SG+ S T +H+++ + I ++DGG + +G+EST+V+ Sbjct: 135 LELIRQAGVPVAAPSANLSGKPSPTKAEHVVND-LNGRIAGVVDGGPTGVGVESTVVSCT 193 Query: 185 CEKKVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242 E V ILRPGG+ E L+ A L + DE P SPGM +HYAP + + + Sbjct: 194 GEIPV-ILRPGGVTKEQLEEAAGPVLIDQGLTDEKKAPMSPGMKYTHYAPEAPLAIVNGG 252 Query: 243 VNPREALI--------RFGNVPIKN---IENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291 V + LI + G + + + A + +L+ A L++ ++ D+ Sbjct: 253 VEDIQRLIDQYQKDGMKVGVLTTEERADVYQADAVRICGRRDRLETVAAGLYDVLRSFDE 312 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 I S P G+G AI NRL +AA R Sbjct: 313 ERLDFIFAESFPEEGVGRAIMNRLLKAAGHR 343 >gi|315304791|ref|ZP_07874955.1| protein Sua5 [Listeria ivanovii FSL F6-596] gi|313626839|gb|EFR95808.1| protein Sua5 [Listeria ivanovii FSL F6-596] Length = 345 Score = 359 bits (922), Expect = 3e-97, Method: Composition-based stats. Identities = 115/336 (34%), Positives = 169/336 (50%), Gaps = 19/336 (5%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 ++ + KA + L G +A PTETVYGL D+ N AI+++Y K RP+ NPLI H++ Sbjct: 13 SNKSVYEKAAKLLQNGECVAFPTETVYGLGADATNQAAIKKIYMAKGRPSDNPLIVHIAS 72 Query: 67 ISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT- 124 + AS ++ L + FWPGPLT++L L T + +A L T R+P Sbjct: 73 REQMDIFVASYPQKAMQLMENFWPGPLTVILPLKKDT-LASNVSAGLSTVGVRMPEHPVS 131 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 LI+ G P+A PSANRSG+ S T H++ + EI IIDGG + +G+EST+++ Sbjct: 132 LALIKEAGLPVAAPSANRSGKPSPTTASHVI-EDLDGEIAGIIDGGETGVGVESTVIDCS 190 Query: 185 CEKKVRILRPGGLEIETLKRAIS-VELEYC-VDETSTPQSPGMLKSHYAPRSQVRL---- 238 E V ILRPGG+ E +++ I VEL ET P++PGM +HYAP++ V L Sbjct: 191 AEIPV-ILRPGGITKEQIEQIIGPVELATNDTKETEKPKAPGMKYTHYAPKAPVYLIEGS 249 Query: 239 --------RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD 290 ++ I I+ + I + + E A L+ ++ D Sbjct: 250 KEFWQKEINKAEAAHKKIGILATEELIEGLTTNAIIQSTGSISSMAEIANQLYKGLRAFD 309 Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326 I P LG A+ NRLE+AA R S+ Sbjct: 310 HVEVDMIFAEVYPETELGAAVMNRLEKAAGNRRISE 345 >gi|256368861|ref|YP_003106367.1| Sua5/YciO/YrdC family protein [Brucella microti CCM 4915] gi|255999019|gb|ACU47418.1| Sua5/YciO/YrdC family protein [Brucella microti CCM 4915] Length = 323 Score = 359 bits (922), Expect = 4e-97, Method: Composition-based stats. Identities = 143/319 (44%), Positives = 193/319 (60%), Gaps = 7/319 (2%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D A+ +A E L G +AIPTETVYGLA D+ N + ++ K RP NPLI HV I Sbjct: 8 DDGAVLRAVEVLRRGGLVAIPTETVYGLAADAANGEGVAGIFAAKGRPQFNPLIVHVDGI 67 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS----TTDIHPLSTANLKTACFRVPCGF 123 +M ++ + DP+S LA+ FWPGPLT+VL L IHPL TA L T R+P G Sbjct: 68 AMAGRYVAFDPVSRRLAEAFWPGPLTIVLPLKERQDTERPIHPLVTAGLSTLAVRMPHGR 127 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + +I P+A PSAN SG+IS T+ + + I LI+D G +G+ESTIV V Sbjct: 128 VRDVITALDSPVAAPSANTSGRISPTSAAAVAGD-LGGRIDLILDAGPCGVGVESTIVKV 186 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 ++ V +LRPGGL E ++ + +L + + Q+PGM++SHYAP + +RL V Sbjct: 187 DGDQ-VHLLRPGGLAAEEIEAFLGQKLRRA-EHAAAIQAPGMMESHYAPDASMRLAVSDV 244 Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303 P EAL+ FG + A LNLS TG L+EAA NLF++M+ D +GA++IA IP Sbjct: 245 KPGEALLAFGPHRVAESNRAAAVLNLSATGDLREAAANLFDFMRRLDATGAATIAVEPIP 304 Query: 304 NHGLGIAINNRLERAAAPR 322 GLG AIN+RL+RAAAPR Sbjct: 305 LDGLGEAINDRLKRAAAPR 323 >gi|228955573|ref|ZP_04117575.1| hypothetical protein bthur0006_49270 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228804101|gb|EEM50718.1| hypothetical protein bthur0006_49270 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 342 Score = 358 bits (920), Expect = 6e-97, Method: Composition-based stats. Identities = 109/326 (33%), Positives = 167/326 (51%), Gaps = 19/326 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 L++A + L +A PTETVYGL ++ + AI +++E K RP+ NPLI H+ S + Sbjct: 16 QLQEAAKLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQL 75 Query: 71 KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + P++ L FWPGPLT++L I TA L T R+P LI Sbjct: 76 DGIVKEIPPVAEKLMAHFWPGPLTIILPRKE--GISEKVTAGLNTVGVRMPDHPIALALI 133 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E P+A PSANRSG+ S T H+ + +I I+DGG + +G+EST+++ Sbjct: 134 EEANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVIDCTSAVP 192 Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV--------RL 238 ILRPGG+ E L+ I V L+ + DE P+SPGM +HYAP++ + + Sbjct: 193 -TILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 251 Query: 239 RAIHVNPREALIRFGNV---PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 + + +E + G + +++ +A + L+ L A L++ ++ D S Sbjct: 252 QHLVDEKKEEGFKVGVLTTEEYQHVYSADVILSCGVRSDLASVATKLYDVLRTFDASEVD 311 Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321 I S PN G+G AI NRL +AA Sbjct: 312 VIFSESFPNEGIGNAIMNRLTKAAGH 337 >gi|16080748|ref|NP_391576.1| ribosome maturation factor; RNA binding protein [Bacillus subtilis subsp. subtilis str. 168] gi|221311656|ref|ZP_03593503.1| hypothetical protein Bsubs1_19976 [Bacillus subtilis subsp. subtilis str. 168] gi|221315984|ref|ZP_03597789.1| hypothetical protein BsubsN3_19897 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320895|ref|ZP_03602189.1| hypothetical protein BsubsJ_19840 [Bacillus subtilis subsp. subtilis str. JH642] gi|221325179|ref|ZP_03606473.1| hypothetical protein BsubsS_20001 [Bacillus subtilis subsp. subtilis str. SMY] gi|732384|sp|P39153|YWLC_BACSU RecName: Full=Probable tRNA threonylcarbamoyladenosine biosynthesis protein YwlC; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein YwlC gi|556881|emb|CAA86105.1| Similar to Saccharomyces cerevisiae SUA5 protein [Bacillus subtilis subsp. subtilis str. 168] gi|2636220|emb|CAB15712.1| putative ribosome maturation factor; RNA binding protein [Bacillus subtilis subsp. subtilis str. 168] gi|1095419|prf||2108403D ipc-29d gene Length = 346 Score = 358 bits (920), Expect = 7e-97, Method: Composition-based stats. Identities = 107/331 (32%), Positives = 173/331 (52%), Gaps = 18/331 (5%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 T+ + +A L +A PTETVYGL +++N A++++YE K RP+ NPLI H++D Sbjct: 16 TNDPQIAQAAALLRENEVVAFPTETVYGLGANAKNTDAVKKIYEAKGRPSDNPLIVHIAD 75 Query: 67 ISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 IS ++ + L K FWPG LTL+L + P TA L+T R+P Sbjct: 76 ISQLEDLTGPAPEKAKTLMKRFWPGALTLILPCKPDA-LSPRVTAGLETVAIRMPDHPLA 134 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 LI G P+A PSAN SG+ S T +H+ + + I I+DGG + IG+EST+++ Sbjct: 135 LALIRESGLPIAAPSANLSGKPSPTKAEHV-AHDLDGRIAGIVDGGPTGIGVESTVLSCA 193 Query: 185 CEKKVRILRPGGLEIETLKRAISV--ELEYCVDETSTPQSPGMLKSHYAPRSQV------ 236 + V +LRPGG+ E ++ I + D+ P SPGM +HYAP + + Sbjct: 194 DDIPV-LLRPGGITKEQIEAVIGPIHVDKGLSDQNEKPISPGMKYTHYAPTAPLAICEGS 252 Query: 237 --RLRAIHVNPREALIRFGNVPIKN---IENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291 R++ + ++ R G + + + +A + + +L+ A L++ ++ D+ Sbjct: 253 PERIQHLIQEYQQGGRRVGVLTTEEKAGVYSADYVKSCGRRAQLETVAAGLYDALRSFDE 312 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 + I S P+ G+G+AI NRL +AA R Sbjct: 313 NKVDFIIAESFPDTGVGLAIMNRLMKAAGGR 343 >gi|17987811|ref|NP_540445.1| SUA5 protein [Brucella melitensis bv. 1 str. 16M] gi|225851941|ref|YP_002732174.1| Sua5/YciO/YrdC/YwlC family protein [Brucella melitensis ATCC 23457] gi|256044125|ref|ZP_05447032.1| Sua5/YciO/YrdC/YwlC family protein [Brucella melitensis bv. 1 str. Rev.1] gi|256264548|ref|ZP_05467080.1| Sua5/YciO/YrdC/YwlC protein [Brucella melitensis bv. 2 str. 63/9] gi|260563482|ref|ZP_05833968.1| Sua5/YciO/YrdC/YwlC protein family [Brucella melitensis bv. 1 str. 16M] gi|265990535|ref|ZP_06103092.1| Sua5/YciO/YrdC/YwlC family protein [Brucella melitensis bv. 1 str. Rev.1] gi|17983537|gb|AAL52709.1| sua5 protein [Brucella melitensis bv. 1 str. 16M] gi|225640306|gb|ACO00220.1| Sua5/YciO/YrdC/YwlC family protein [Brucella melitensis ATCC 23457] gi|260153498|gb|EEW88590.1| Sua5/YciO/YrdC/YwlC protein family [Brucella melitensis bv. 1 str. 16M] gi|263001319|gb|EEZ13894.1| Sua5/YciO/YrdC/YwlC family protein [Brucella melitensis bv. 1 str. Rev.1] gi|263094882|gb|EEZ18620.1| Sua5/YciO/YrdC/YwlC protein [Brucella melitensis bv. 2 str. 63/9] gi|326408439|gb|ADZ65504.1| Sua5/YciO/YrdC/YwlC family protein [Brucella melitensis M28] gi|326538155|gb|ADZ86370.1| Sua5/YciO/YrdC/YwlC family protein [Brucella melitensis M5-90] Length = 323 Score = 358 bits (919), Expect = 9e-97, Method: Composition-based stats. Identities = 143/319 (44%), Positives = 195/319 (61%), Gaps = 7/319 (2%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D A+ +A E L G +AIPTETVYGLA D+ N + ++ K RP NPLI HV I Sbjct: 8 DDGAVLRAVEVLRRGGLVAIPTETVYGLAADAANGEGVAGIFAAKGRPQFNPLIAHVDGI 67 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS----TTDIHPLSTANLKTACFRVPCGF 123 +M ++ + DP+S LA+ FWPGPLT+VL L IHPL TA L T R+P G Sbjct: 68 AMAGRYVAFDPVSRRLAEAFWPGPLTIVLPLKERQDTERPIHPLVTAGLSTLAVRMPHGR 127 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + +I P+A PSAN SG+IS T+ + + +I LI+D G +G+ESTIV V Sbjct: 128 VRDVITALDSPVAAPSANTSGRISPTSAAAVAGD-LGGQIDLILDAGPCGVGVESTIVKV 186 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 ++ V +LRPGGL E ++ + +L + ++ Q+PGM++SHYAP + +RL V Sbjct: 187 DGDQ-VHLLRPGGLAAEEIEAFLGQKLRRA-EHSAAIQAPGMMESHYAPDASMRLAVSDV 244 Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303 P EAL+ FG + A LNLS TG L+EAA NLF++M+ D +GA++IA IP Sbjct: 245 KPGEALLAFGPHRVAESNRAAAVLNLSATGDLREAAANLFDFMRRLDATGAATIAVEPIP 304 Query: 304 NHGLGIAINNRLERAAAPR 322 GLG AIN+RL+RAAAPR Sbjct: 305 LDGLGEAINDRLKRAAAPR 323 >gi|228911164|ref|ZP_04074970.1| hypothetical protein bthur0013_53040 [Bacillus thuringiensis IBL 200] gi|228848527|gb|EEM93375.1| hypothetical protein bthur0013_53040 [Bacillus thuringiensis IBL 200] Length = 346 Score = 358 bits (919), Expect = 9e-97, Method: Composition-based stats. Identities = 109/326 (33%), Positives = 166/326 (50%), Gaps = 19/326 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 L++A + L +A PTETVYGL ++ + AI +++E K RP+ NPLI H+ S + Sbjct: 20 QLQEAAKLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQL 79 Query: 71 KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + P++ L FWPGPLT++L I TA L T R+P LI Sbjct: 80 DGIVKEIPPVAEKLMAHFWPGPLTIILPRKEG--ISERVTAGLNTVGVRMPDHPVALALI 137 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E P+A PSANRSG+ S T H+ + +I I+DGG + +G+EST+++ Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVIDCTSPVP 196 Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV--------RL 238 ILRPGG+ E L+ I V L+ + DE P+SPGM +HYAP++ + + Sbjct: 197 -TILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255 Query: 239 RAIHVNPREALIRFGNV---PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 + + +E + G + +++ NA + L+ L A L++ ++ D S Sbjct: 256 QQLVDGKKEEGFKVGVLTTEEYQHVYNADVILSCGVRSDLASVATKLYDVLRTFDASEVD 315 Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321 I S N G+G AI NRL +AA Sbjct: 316 VIFSESFSNEGIGNAIMNRLTKAAGH 341 >gi|226315059|ref|YP_002774955.1| hypothetical protein BBR47_54740 [Brevibacillus brevis NBRC 100599] gi|226098009|dbj|BAH46451.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 359 Score = 357 bits (918), Expect = 9e-97, Method: Composition-based stats. Identities = 107/339 (31%), Positives = 168/339 (49%), Gaps = 28/339 (8%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 + A FL G +A PTETVYGL ++ + A+ +++ K RP+ NPLI H+ + Sbjct: 24 QIVDAARFLREGAVVAFPTETVYGLGANALSNEAVEKIFTAKGRPSDNPLIVHIGAWDQL 83 Query: 71 KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 A V L + FWPGPLT++L T + L TA L + R+P LI Sbjct: 84 STVASEVPEKGKKLMEAFWPGPLTVILP--KTDQVASLVTAGLDSVGVRMPDHPIALALI 141 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 + G P+A PSANRSG+ S T H+L + + + ++DGG + +G+EST+++V + Sbjct: 142 KEAGVPIAAPSANRSGRPSPTTAAHVL-ADLDGRVAGVVDGGATGVGVESTVIDVTQDPP 200 Query: 189 VRILRPGGLEIETLKRAIS-VELEYC--VDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245 + ILRPGG+ E ++ I VEL+ V P+SPGM +HYAP ++ L + Sbjct: 201 M-ILRPGGITREQMEPVIGYVELDPSFQVGAAEAPRSPGMKYTHYAPEGEMWLVSGECEK 259 Query: 246 ------------REALIRFGNVPIKNI-------ENAIISLNLSKTGKLKEAAFNLFNYM 286 ++ + G + + + + L + L+ A L+ + Sbjct: 260 VRGKMEDMLQQAKQHGQKTGVLATEETAPFWQSHASVDVVLVVGSQSDLEGVAQQLYAVL 319 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325 + DD I + P +GLG+A+ NRLE+AA R S Sbjct: 320 REFDDQEVQYIVGETFPRNGLGMAVMNRLEKAAGGRVLS 358 >gi|256159112|ref|ZP_05456933.1| Sua5/YciO/YrdC/YwlC protein family [Brucella ceti M490/95/1] gi|256254451|ref|ZP_05459987.1| Sua5/YciO/YrdC/YwlC protein family [Brucella ceti B1/94] gi|261221622|ref|ZP_05935903.1| Sua5/YciO/YrdC/YwlC family protein [Brucella ceti B1/94] gi|265997584|ref|ZP_06110141.1| Sua5/YciO/YrdC/YwlC family protein [Brucella ceti M490/95/1] gi|260920206|gb|EEX86859.1| Sua5/YciO/YrdC/YwlC family protein [Brucella ceti B1/94] gi|262552052|gb|EEZ08042.1| Sua5/YciO/YrdC/YwlC family protein [Brucella ceti M490/95/1] Length = 323 Score = 357 bits (918), Expect = 9e-97, Method: Composition-based stats. Identities = 143/319 (44%), Positives = 194/319 (60%), Gaps = 7/319 (2%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D A+ +A E L G +AIPTETVYGLA D+ N + ++ K RP NPLI HV I Sbjct: 8 DDGAVLRAVEVLRRGGLVAIPTETVYGLAADAANGEGVAGIFAAKGRPQFNPLIAHVDGI 67 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS----TTDIHPLSTANLKTACFRVPCGF 123 +M ++ + DP+S LA+ FWPGPLT+VL L IHPL TA L T R+P G Sbjct: 68 AMAGRYVAFDPVSRRLAEAFWPGPLTIVLPLKERQDTERPIHPLVTAGLSTLAVRMPHGR 127 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + +I P+A PSAN SG+IS T+ + + I LI+D G +G+ESTIV V Sbjct: 128 VRDVITALDSPVAAPSANTSGRISPTSAAAVAGD-LGGRIDLILDAGPCGVGVESTIVKV 186 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 ++ V +LRPGGL E ++ + +L + + Q+PGM++SHYAP + +RL V Sbjct: 187 DGDQ-VHLLRPGGLAAEEIEAFLGQKLRRA-EHAAAIQAPGMMESHYAPDASMRLAVSDV 244 Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303 P EAL+ FG + A + LNLS TG L+EAA NLF++M+ D +GA++IA IP Sbjct: 245 KPGEALLAFGPHRVAESNRAAVVLNLSATGDLREAAANLFDFMRRLDATGAATIAVEPIP 304 Query: 304 NHGLGIAINNRLERAAAPR 322 GLG AIN+RL+RAAAPR Sbjct: 305 LDGLGEAINDRLKRAAAPR 323 >gi|242399386|ref|YP_002994810.1| Sua5 superfamily-related protein [Thermococcus sibiricus MM 739] gi|242265779|gb|ACS90461.1| Sua5 superfamily-related protein [Thermococcus sibiricus MM 739] Length = 341 Score = 357 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 115/332 (34%), Positives = 176/332 (53%), Gaps = 23/332 (6%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D ++ A F+ +A PTETVYGL D+ N A+R++++ K RP NPLI H+++ Sbjct: 12 DWKKIKVAARFIKESKLVAFPTETVYGLGADALNEDAVRKIFQAKGRPPDNPLIIHIANF 71 Query: 68 SMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + + A P + LA+ FWPGPLTLVL ++ ++T L+T R+P Sbjct: 72 EQIYELAREVPETAKILAQRFWPGPLTLVLP--KKDEVPYVTTGGLETVAIRMPDHEIAL 129 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LI++ P+A PSAN SG+ S T +H++ K I IIDGG +KIG+EST+V++ Sbjct: 130 ALIQSSDRPIAAPSANISGKPSPTLAEHVVDDFYGK-IECIIDGGETKIGVESTVVDLTT 188 Query: 186 EKKVRILRPGGLEIETLKRAIS-VELEYCVDETST--PQSPGMLKSHYAPRSQV------ 236 +LRPGGL +E +K+ I V + V ++PGM HYAP +QV Sbjct: 189 -HPPMLLRPGGLPLEEIKKVIGKVNVHPAVKGKPIKLAKAPGMKYKHYAPEAQVIVIEGE 247 Query: 237 ------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD 290 +++ + ++ IR G + + A N+ + +E A NLF ++ D Sbjct: 248 REQVTKKIKELIKEYKKQKIRVGVMATGDFYEADAYFNIGE--NEEEIARNLFKALRELD 305 Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 SG + I I GLG+A+ NRL++AA R Sbjct: 306 KSGVNVILAEGIEERGLGLAVMNRLKKAAGYR 337 >gi|321313245|ref|YP_004205532.1| putative ribosome maturation factor; RNA binding protein [Bacillus subtilis BSn5] gi|320019519|gb|ADV94505.1| putative ribosome maturation factor; RNA binding protein [Bacillus subtilis BSn5] Length = 346 Score = 357 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 108/331 (32%), Positives = 171/331 (51%), Gaps = 18/331 (5%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 T+ + +A L +A PTETVYGL +++N A++++YE K RP+ NPLI H++D Sbjct: 16 TNDPQIAQAAALLRENEVVAFPTETVYGLGANAKNTDAVKKIYEAKGRPSDNPLIVHIAD 75 Query: 67 ISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 IS ++ + L K FWPG LTL+L + P TA L+T R+P Sbjct: 76 ISQLEDLTGPAPEKAKTLMKRFWPGALTLILPCKPDA-LSPRVTAGLETVAIRMPDHPLA 134 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 LI G P+A PSAN SG+ S T +H+ + + I I+DGG + IG+EST+++ Sbjct: 135 LALIRESGLPIAAPSANLSGKPSPTKAEHV-AHDLDGRIAGIMDGGPTGIGVESTVLSCA 193 Query: 185 CEKKVRILRPGGLEIETLKRAISV--ELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242 + V +LRPGG+ E ++ I + D+ P SPGM +HYAP + + + Sbjct: 194 DDIPV-LLRPGGITKEQIEAVIGPIHVDKGLSDQNEKPISPGMKYTHYAPTAPLAICEGS 252 Query: 243 VNPREALI--------RFGNVPIKN---IENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291 + LI R G + + + +A + + +L+ A L++ ++ D+ Sbjct: 253 PEHIQHLIQEYQQGGRRVGVLTTEENAGVYSADYVKSCGRRAQLETVAAGLYDALRSFDE 312 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 + I S P+ G+G+AI NRL +AA R Sbjct: 313 NKVDFIIAESFPDTGVGLAIMNRLMKAAGGR 343 >gi|311070214|ref|YP_003975137.1| putative ribosome maturation factor; RNA binding protein [Bacillus atrophaeus 1942] gi|310870731|gb|ADP34206.1| putative ribosome maturation factor; RNA binding protein [Bacillus atrophaeus 1942] Length = 346 Score = 357 bits (917), Expect = 1e-96, Method: Composition-based stats. Identities = 110/331 (33%), Positives = 174/331 (52%), Gaps = 18/331 (5%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 T + +A + L +A PTETVYGL ++ + A+ ++YE K RP+ NPLI H++D Sbjct: 16 TKDPQIAQAADLLRQNEVVAFPTETVYGLGANAESTEAVMKIYEAKGRPSDNPLIVHIAD 75 Query: 67 ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 IS + + A + L K FWPG LTLVL + P TA L+T R+P Sbjct: 76 ISQLDRIAGPASEKAKKLMKQFWPGALTLVLPCKPGV-LSPRVTAGLETVAVRMPDHPLA 134 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 LI + G P+A PSAN SG+ S T +H+ + I IIDGG + +G+EST+++ Sbjct: 135 LALIRSSGLPIAAPSANLSGKPSPTRAEHV-EHDLNGRIAGIIDGGATGLGVESTVISCS 193 Query: 185 CEKKVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQV------ 236 + V +LRPGG+ E ++ I L + ++ TP SPGM +HYAP + + Sbjct: 194 EDMPV-LLRPGGITKEQIEEEIGEVLVDKGLTEKNETPISPGMKYTHYAPSAPLAVTEGS 252 Query: 237 --RLRAIHVNPREALIRFGNVPIKN---IENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291 R++A+ +++ R G + + I A + + +L+ A +L++ ++ D+ Sbjct: 253 AERIQALVREYQQSGKRVGVLTTEERADIYEADFVKSCGRRDQLETVAASLYDALRSFDE 312 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 I + PN G+G AI NRL +AA + Sbjct: 313 VKVDFIIAEAFPNTGVGHAIMNRLMKAAGGK 343 >gi|194016307|ref|ZP_03054921.1| YwlC [Bacillus pumilus ATCC 7061] gi|194011780|gb|EDW21348.1| YwlC [Bacillus pumilus ATCC 7061] Length = 350 Score = 357 bits (917), Expect = 1e-96, Method: Composition-based stats. Identities = 108/330 (32%), Positives = 165/330 (50%), Gaps = 18/330 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 + +A L +A PTETVYGL +++ A+ ++YE K RP+ NPLI H+++I + Sbjct: 21 QIEQAALLLQQNEVVAFPTETVYGLGANAKETEAVMKIYEAKGRPSDNPLIVHIAEIEQL 80 Query: 71 KKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + A + + L FWPG LT+VL T + TA L T R+P +LI Sbjct: 81 HEFAQIESEKAKALMDAFWPGALTIVLPCKPGT-LSKQVTAGLSTVGVRMPDHPIALELI 139 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 T G P+A PSANRSG+ S T H+ +S + I I+DGG + IG+EST+V+ E Sbjct: 140 RTAGLPIAAPSANRSGKPSPTQADHV-ASDLDGRIAGIVDGGSTGIGVESTVVSCVDEIP 198 Query: 189 VRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246 V ILRPGG+ E L+ + + P SPGM +HYAP +++ L Sbjct: 199 V-ILRPGGITKEALEEVVGTVSIDPGLTKKDEAPVSPGMKYTHYAPEAKMYLFFGSDEEM 257 Query: 247 EALI--------RFGNVPIKNIEN---AIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 + I + G + + ++ A + + K + A NL+ ++ D++ Sbjct: 258 QRHIQTYQAEGFKVGVLTTEEKKSLFAADVVFSCGWREKPETIAANLYRVLRQFDETDVD 317 Query: 296 SIAFSSIPNHGLGIAINNRLERAAAPRNQS 325 I + G+G AI NRL++AA R S Sbjct: 318 VIISEAFSEQGVGSAIMNRLQKAAGGRTLS 347 >gi|256751355|ref|ZP_05492234.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter ethanolicus CCSD1] gi|256749737|gb|EEU62762.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter ethanolicus CCSD1] Length = 354 Score = 357 bits (917), Expect = 1e-96, Method: Composition-based stats. Identities = 100/338 (29%), Positives = 164/338 (48%), Gaps = 26/338 (7%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + A + + G +A PTETVYG+ +S N A+++++ K RP NPLI H++++ Sbjct: 15 ELIDFAAKVIKEGGLVAFPTETVYGIGANSFNEEAVKKIFIAKGRPQDNPLIVHIAELEQ 74 Query: 70 VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + V + L K FWPGPLTL+ + + ++TA + T R+P L Sbjct: 75 IYDLVKEVPQKAKTLMKKFWPGPLTLIF--KKSQKVPYVNTAGMDTVAIRMPSNTIAHLL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I+ P++ PSAN SG+ S T+ H++ + ++ +IIDGG +G+EST++++ EK Sbjct: 133 IKRAEVPISAPSANVSGKPSPTDASHVI-EDLYGKVDVIIDGGKCDVGVESTVLDLT-EK 190 Query: 188 KVRILRPGGLEIETLKRAIS-VELEYCV----DETSTPQSPGMLKSHYAPRSQVRLRAIH 242 ILRPG + +E L+ I VE++ + E P+SPGM HY+P ++V + Sbjct: 191 VPVILRPGAVTLEMLREVIGNVEVDPSLLKKPQEDLKPKSPGMKYKHYSPNAEVYIVTGD 250 Query: 243 VNPREALIR---------------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMK 287 + I+ V + + + + A NLF ++ Sbjct: 251 LEKVVKKIQELTEEQLKYGKKVGIMATVQTSTQYEKGEIIVVGDRNRPETIAKNLFEVLR 310 Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325 D G I S +G+AI NRLE+AA + S Sbjct: 311 QFDKKGVDVIFAESFEYDNIGLAIMNRLEKAAGYKEIS 348 >gi|323694150|ref|ZP_08108329.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium symbiosum WAL-14673] gi|323501867|gb|EGB17750.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium symbiosum WAL-14673] Length = 354 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 115/353 (32%), Positives = 172/353 (48%), Gaps = 34/353 (9%) Query: 2 QIMSITDS--------NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK 53 +++ ++D L +A E L G +A PTETVYGL ++ + A R++YE K Sbjct: 4 KVLKVSDEGNFTAKEKQYLEEAAEILKNGGLVAFPTETVYGLGANALDEKAARKIYEAKG 63 Query: 54 RPAMNPLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANL 112 RP+ NPLI HV+D ++ S + + LAK FWPGP+TL+ + + +T L Sbjct: 64 RPSDNPLIAHVADFEGLRPLVSRIPENGIKLAKAFWPGPMTLIFP--KSDLVPLGTTGGL 121 Query: 113 KTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171 T R+P ++LI G P+A PSAN SG+ S T +H+ + I +I+DGG Sbjct: 122 DTVAVRMPSDPVARELIRLAGVPVAAPSANTSGRPSPTRAEHVF-QDMNGRIEMILDGGP 180 Query: 172 SKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYC----VDETSTPQSPGML 226 IG+ESTIV+V E V +LRPG + +E L A+ V ++ V P++PGM Sbjct: 181 VGIGVESTIVDVTEEIPV-MLRPGAVTMEMLHEAVGEVRIDPAILGPVSPGLKPKAPGMK 239 Query: 227 KSHYAPRSQV---------------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSK 271 HYAP + + RL A + + + + ++ + Sbjct: 240 YRHYAPNADLTLVEGEEEKVVCEINRLAAEKLKEGYKVGIICTDETRECYGGGLVRSIGE 299 Query: 272 TGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQ 324 K + A NL+ ++ DD GA I P LG AI NRL +AA R Q Sbjct: 300 RAKEETVAHNLYALLREFDDLGAQYIYSEGFPEDHLGQAIMNRLSKAAGYRIQ 352 >gi|254718586|ref|ZP_05180397.1| Sua5/YciO/YrdC/YwlC protein family [Brucella sp. 83/13] gi|265983561|ref|ZP_06096296.1| Sua5/YciO/YrdC/YwlC family protein [Brucella sp. 83/13] gi|306839897|ref|ZP_07472695.1| Sua5/YciO/YrdC/YwlC family protein [Brucella sp. NF 2653] gi|264662153|gb|EEZ32414.1| Sua5/YciO/YrdC/YwlC family protein [Brucella sp. 83/13] gi|306405083|gb|EFM61364.1| Sua5/YciO/YrdC/YwlC family protein [Brucella sp. NF 2653] Length = 323 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 143/319 (44%), Positives = 193/319 (60%), Gaps = 7/319 (2%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D A+ +A E L G +AIPTETVYGLA D+ N + ++ K RP NPLI HV I Sbjct: 8 DDGAVLRAVEVLRRGGLVAIPTETVYGLAADAANGEGVAGIFAAKGRPQFNPLIAHVDGI 67 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS----TTDIHPLSTANLKTACFRVPCGF 123 +M ++ + DP+S LA+ FWPGPLT+VL L IHPL TA L T R+P G Sbjct: 68 AMAGRYVAFDPVSRRLAEAFWPGPLTIVLPLKERQDTERPIHPLVTAGLSTLAVRMPHGR 127 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + +I P+A PSAN SG+IS T+ + + I LI+D G +G+ESTIV V Sbjct: 128 VRDVITALDSPVAAPSANTSGRISPTSAASVAGD-LGGRIDLILDAGPCGVGVESTIVKV 186 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 ++ V +LRPGGL E ++ + +L + + Q+PGM++SHYAP + +RL V Sbjct: 187 DGDQ-VHLLRPGGLAAEEIEAFLGQKLRRA-EHAAAIQAPGMMESHYAPDASMRLAVSDV 244 Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303 P EAL+ FG + A LNLS TG L+EAA NLF++M+ D +GA++IA IP Sbjct: 245 KPGEALLAFGPHRVAESNRAAAVLNLSATGDLREAAANLFDFMRRLDATGAATIAVEPIP 304 Query: 304 NHGLGIAINNRLERAAAPR 322 GLG AIN+RL+RAAAPR Sbjct: 305 LDGLGEAINDRLKRAAAPR 323 >gi|323485388|ref|ZP_08090736.1| hypothetical protein HMPREF9474_02487 [Clostridium symbiosum WAL-14163] gi|323401251|gb|EGA93601.1| hypothetical protein HMPREF9474_02487 [Clostridium symbiosum WAL-14163] Length = 354 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 114/353 (32%), Positives = 170/353 (48%), Gaps = 34/353 (9%) Query: 2 QIMSITDS--------NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK 53 +++ ++D L +A E L G +A PTETVYGL ++ + A R++YE K Sbjct: 4 KVLKVSDEGNFTAKEKKYLEEAAEILKNGGLVAFPTETVYGLGANALDEKAARKIYEAKG 63 Query: 54 RPAMNPLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANL 112 RP+ NPLI HV+D ++ S + + LAK FWPGP+TL+ + + +T L Sbjct: 64 RPSDNPLIAHVADFEGLRPLVSRIPENGIKLAKAFWPGPMTLIFP--KSDLVPLGTTGGL 121 Query: 113 KTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171 T R+P ++LI G P+A PSAN SG+ S T +H+ + I +I+DGG Sbjct: 122 DTVAVRMPSDPVARELIRLAGVPVAAPSANTSGRPSPTRAEHVF-QDMNGRIEMILDGGP 180 Query: 172 SKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYC----VDETSTPQSPGML 226 IG+ESTIV+V E V +LRPG + +E L A+ V ++ V P++PGM Sbjct: 181 VGIGVESTIVDVTEEIPV-MLRPGAVTMEMLHEAVGEVRIDPAILGPVSPGLKPKAPGMK 239 Query: 227 KSHYAPRSQVRLRAIHVNPREALIR---------------FGNVPIKNIENAIISLNLSK 271 HYAP + + L I+ + + ++ + Sbjct: 240 YRHYAPNADLTLVEGEEEKVVCEIKRLAAEKLKEGYKVGIICTDETRECYGGGLVRSIGE 299 Query: 272 TGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQ 324 K + A NL+ ++ DD GA I P LG AI NRL +AA R Q Sbjct: 300 RAKEETVAHNLYALLREFDDLGAQYIYSEGFPEDHLGQAIMNRLSKAAGYRIQ 352 >gi|296331334|ref|ZP_06873806.1| putative ribosome maturation factor; RNA binding protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305676320|ref|YP_003867992.1| putative ribosome maturation factor; RNA binding protein [Bacillus subtilis subsp. spizizenii str. W23] gi|296151449|gb|EFG92326.1| putative ribosome maturation factor; RNA binding protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414564|gb|ADM39683.1| putative ribosome maturation factor; RNA binding protein [Bacillus subtilis subsp. spizizenii str. W23] Length = 346 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 107/331 (32%), Positives = 173/331 (52%), Gaps = 18/331 (5%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 T+ + +A L +A PTETVYGL +++N A++++Y+ K RP+ NPLI H++D Sbjct: 16 TNDPQIAQAAALLRENEVVAFPTETVYGLGANAKNTDAVKKIYKAKGRPSDNPLIVHIAD 75 Query: 67 ISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 IS + + L K FWPG LTL+L + P TA L+T R+P Sbjct: 76 ISQLDGLTGPAPEKAKTLMKRFWPGALTLILPCKPGA-LSPRVTAGLETVAIRMPDHPLA 134 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 LI G P+A PSAN SG+ S T +H+ + + I I+DGG + IG+EST+++ Sbjct: 135 LALIRESGLPIAAPSANLSGKPSPTKAEHV-AHDLDGRIAGIMDGGPTGIGVESTVLSCA 193 Query: 185 CEKKVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQV------ 236 + V +LRPGG+ E ++ I L + D+ P SPGM +HYAP + + Sbjct: 194 GDIPV-LLRPGGITKEQIEAEIGPILVDKGLSDQNEKPISPGMKYTHYAPTAPLAICEGG 252 Query: 237 --RLRAIHVNPREALIRFGNVPIKN---IENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291 R++ + ++ R G + + + +A + + +L+ A L++ ++ D+ Sbjct: 253 PERIQHLIQEYQQGGRRVGVLTTEENAGVYSADYVKSCGRRAQLETVAAALYDALRSFDE 312 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 + I S P+ G+G+AI NRL +AA R Sbjct: 313 NKVDFIIAESFPDTGVGLAIMNRLMKAAGGR 343 >gi|306845031|ref|ZP_07477612.1| Sua5/YciO/YrdC/YwlC family protein [Brucella sp. BO1] gi|306274663|gb|EFM56452.1| Sua5/YciO/YrdC/YwlC family protein [Brucella sp. BO1] Length = 323 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 143/319 (44%), Positives = 194/319 (60%), Gaps = 7/319 (2%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D A+ +A E L G +AIPTETVYGLA D+ N + ++ K RP NPLI HV I Sbjct: 8 DDGAVLRAVEVLRRGGLVAIPTETVYGLAADAANGEGVAGIFAAKGRPQFNPLIAHVDGI 67 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS----TTDIHPLSTANLKTACFRVPCGF 123 +M ++ + DP+S LA+ FWPGPLT+VL L IHPL TA L T R+P G Sbjct: 68 AMAGRYVAFDPVSRRLAEAFWPGPLTIVLPLKERQDTDRPIHPLVTAGLSTLAVRMPHGR 127 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + +I P+A PSAN SG+IS T+ + + I LI+D G +G+ESTIV V Sbjct: 128 VRDVITALDSPVAAPSANTSGRISPTSAAAVAGD-LGGRIDLILDAGPCDVGVESTIVKV 186 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 ++ V +LRPGGL E ++ + +L + + Q+PGM++SHYAP + +RL +V Sbjct: 187 DGDQ-VHLLRPGGLAAEEIEAFLGQKLRRA-EHAAAIQAPGMMESHYAPDASMRLAVSNV 244 Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303 P EAL+ FG + A LNLS TG L+EAA NLF++M+ D +GA++IA IP Sbjct: 245 KPGEALLAFGPHRVAESNRAAAVLNLSATGDLREAAANLFDFMRRLDATGAATIAVEPIP 304 Query: 304 NHGLGIAINNRLERAAAPR 322 GLG AIN+RL+RAAAPR Sbjct: 305 LDGLGEAINDRLKRAAAPR 323 >gi|182678988|ref|YP_001833134.1| Sua5/YciO/YrdC/YwlC family protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182634871|gb|ACB95645.1| Sua5/YciO/YrdC/YwlC family protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 326 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 130/320 (40%), Positives = 190/320 (59%), Gaps = 9/320 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++ + KA L G +A PTETVYGL D+ A+ ++Y K+RP+ NPLI HV+ ++ Sbjct: 12 TSEITKAASILRQGGLVAFPTETVYGLGADATRDEAVAKIYAAKERPSFNPLIAHVASLA 71 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + H ++L LA FWPGPLTLV+ + + I L+ A L + RVP + L Sbjct: 72 EAQCHGIFSDMALRLAACFWPGPLTLVVPVSPESKICALARAGLDSVALRVPAHPIARAL 131 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 IE G PLA PSANRSG++S + +H+ + + LI+DGG +G+ESTI++ + Sbjct: 132 IEATGLPLAAPSANRSGRVSPVSAEHV-REDLGDRVDLILDGGRCPVGVESTIIDCLEAQ 190 Query: 188 KVRILRPGGLEIETLKRAIS--VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245 R+LRPGG+ E ++ + +E + TS + PG+L SHYAPR++VRL A + Sbjct: 191 P-RLLRPGGIPREAIETCLGRILEAPPRLTATSPLRGPGLLASHYAPRAKVRLDATDLQK 249 Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305 EA + FG + A +L+LS +G L EAA +LF Y++ D G +IA + IP Sbjct: 250 GEAGLDFGG----HFAKAAHTLDLSPSGDLTEAAAHLFTYLRHLDALGLETIAVAPIPET 305 Query: 306 GLGIAINNRLERAAAPRNQS 325 GLG AIN+RL RAAAPR+ + Sbjct: 306 GLGEAINDRLRRAAAPRHPA 325 >gi|23501309|ref|NP_697436.1| Sua5/YciO/YrdC family protein [Brucella suis 1330] gi|62289392|ref|YP_221185.1| Sua5/YciO/YrdC family protein [Brucella abortus bv. 1 str. 9-941] gi|82699320|ref|YP_413894.1| Sua5/YciO/YrdC/YwlC family protein:SUA5 [Brucella melitensis biovar Abortus 2308] gi|161618380|ref|YP_001592267.1| Sua5/YciO/YrdC/YwlC family protein [Brucella canis ATCC 23365] gi|163842687|ref|YP_001627091.1| Sua5/YciO/YrdC/YwlC family protein [Brucella suis ATCC 23445] gi|189023644|ref|YP_001934412.1| Sua5/YciO/YrdC/YwlC protein family [Brucella abortus S19] gi|225626914|ref|ZP_03784953.1| Sua5/YciO/YrdC/YwlC family protein [Brucella ceti str. Cudo] gi|237814879|ref|ZP_04593877.1| Sua5/YciO/YrdC/YwlC family protein [Brucella abortus str. 2308 A] gi|254688706|ref|ZP_05151960.1| Sua5/YciO/YrdC/YwlC protein family [Brucella abortus bv. 6 str. 870] gi|254696834|ref|ZP_05158662.1| Sua5/YciO/YrdC/YwlC protein family [Brucella abortus bv. 2 str. 86/8/59] gi|254701213|ref|ZP_05163041.1| Sua5/YciO/YrdC/YwlC protein family [Brucella suis bv. 5 str. 513] gi|254703759|ref|ZP_05165587.1| Sua5/YciO/YrdC/YwlC protein family [Brucella suis bv. 3 str. 686] gi|254707862|ref|ZP_05169690.1| Sua5/YciO/YrdC/YwlC protein family [Brucella pinnipedialis M163/99/10] gi|254713027|ref|ZP_05174838.1| Sua5/YciO/YrdC/YwlC protein family [Brucella ceti M644/93/1] gi|254716618|ref|ZP_05178429.1| Sua5/YciO/YrdC/YwlC protein family [Brucella ceti M13/05/1] gi|254729739|ref|ZP_05188317.1| Sua5/YciO/YrdC/YwlC protein family [Brucella abortus bv. 4 str. 292] gi|256031048|ref|ZP_05444662.1| Sua5/YciO/YrdC/YwlC protein family [Brucella pinnipedialis M292/94/1] gi|256256953|ref|ZP_05462489.1| Sua5/YciO/YrdC/YwlC protein family [Brucella abortus bv. 9 str. C68] gi|260168179|ref|ZP_05754990.1| Sua5/YciO/YrdC/YwlC protein family [Brucella sp. F5/99] gi|260545856|ref|ZP_05821597.1| Sua5/YciO/YrdC/YwlC protein family [Brucella abortus NCTC 8038] gi|260566987|ref|ZP_05837457.1| Sua5/YciO/YrdC/YwlC protein family [Brucella suis bv. 4 str. 40] gi|260754183|ref|ZP_05866531.1| Sua5/YciO/YrdC/YwlC family protein [Brucella abortus bv. 6 str. 870] gi|260757403|ref|ZP_05869751.1| Sua5/YciO/YrdC/YwlC family protein [Brucella abortus bv. 4 str. 292] gi|260761228|ref|ZP_05873571.1| Sua5/YciO/YrdC/YwlC family protein [Brucella abortus bv. 2 str. 86/8/59] gi|260883208|ref|ZP_05894822.1| Sua5/YciO/YrdC/YwlC family protein [Brucella abortus bv. 9 str. C68] gi|261218418|ref|ZP_05932699.1| Sua5/YciO/YrdC/YwlC family protein [Brucella ceti M13/05/1] gi|261315352|ref|ZP_05954549.1| Sua5/YciO/YrdC/YwlC family protein [Brucella pinnipedialis M163/99/10] gi|261320733|ref|ZP_05959930.1| Sua5/YciO/YrdC/YwlC family protein [Brucella ceti M644/93/1] gi|261751751|ref|ZP_05995460.1| Sua5/YciO/YrdC/YwlC family protein [Brucella suis bv. 5 str. 513] gi|261754405|ref|ZP_05998114.1| Sua5/YciO/YrdC/YwlC family protein [Brucella suis bv. 3 str. 686] gi|261757638|ref|ZP_06001347.1| Sua5/YciO/YrdC/YwlC protein family [Brucella sp. F5/99] gi|265988119|ref|ZP_06100676.1| Sua5/YciO/YrdC/YwlC family protein [Brucella pinnipedialis M292/94/1] gi|294851786|ref|ZP_06792459.1| translation factor [Brucella sp. NVSL 07-0026] gi|297247805|ref|ZP_06931523.1| translation factor [Brucella abortus bv. 5 str. B3196] gi|23347198|gb|AAN29351.1| Sua5/YciO/YrdC family protein [Brucella suis 1330] gi|62195524|gb|AAX73824.1| Sua5/YciO/YrdC family protein [Brucella abortus bv. 1 str. 9-941] gi|82615421|emb|CAJ10390.1| Sua5/YciO/YrdC/YwlC protein family:SUA5:SUA5/yciO/yrdC, N-terminal [Brucella melitensis biovar Abortus 2308] gi|161335191|gb|ABX61496.1| Sua5/YciO/YrdC/YwlC family protein [Brucella canis ATCC 23365] gi|163673410|gb|ABY37521.1| Sua5/YciO/YrdC/YwlC family protein [Brucella suis ATCC 23445] gi|189019216|gb|ACD71938.1| Sua5/YciO/YrdC/YwlC protein family [Brucella abortus S19] gi|225618571|gb|EEH15614.1| Sua5/YciO/YrdC/YwlC family protein [Brucella ceti str. Cudo] gi|237789716|gb|EEP63926.1| Sua5/YciO/YrdC/YwlC family protein [Brucella abortus str. 2308 A] gi|260097263|gb|EEW81138.1| Sua5/YciO/YrdC/YwlC protein family [Brucella abortus NCTC 8038] gi|260156505|gb|EEW91585.1| Sua5/YciO/YrdC/YwlC protein family [Brucella suis bv. 4 str. 40] gi|260667721|gb|EEX54661.1| Sua5/YciO/YrdC/YwlC family protein [Brucella abortus bv. 4 str. 292] gi|260671660|gb|EEX58481.1| Sua5/YciO/YrdC/YwlC family protein [Brucella abortus bv. 2 str. 86/8/59] gi|260674291|gb|EEX61112.1| Sua5/YciO/YrdC/YwlC family protein [Brucella abortus bv. 6 str. 870] gi|260872736|gb|EEX79805.1| Sua5/YciO/YrdC/YwlC family protein [Brucella abortus bv. 9 str. C68] gi|260923507|gb|EEX90075.1| Sua5/YciO/YrdC/YwlC family protein [Brucella ceti M13/05/1] gi|261293423|gb|EEX96919.1| Sua5/YciO/YrdC/YwlC family protein [Brucella ceti M644/93/1] gi|261304378|gb|EEY07875.1| Sua5/YciO/YrdC/YwlC family protein [Brucella pinnipedialis M163/99/10] gi|261737622|gb|EEY25618.1| Sua5/YciO/YrdC/YwlC protein family [Brucella sp. F5/99] gi|261741504|gb|EEY29430.1| Sua5/YciO/YrdC/YwlC family protein [Brucella suis bv. 5 str. 513] gi|261744158|gb|EEY32084.1| Sua5/YciO/YrdC/YwlC family protein [Brucella suis bv. 3 str. 686] gi|264660316|gb|EEZ30577.1| Sua5/YciO/YrdC/YwlC family protein [Brucella pinnipedialis M292/94/1] gi|294820375|gb|EFG37374.1| translation factor [Brucella sp. NVSL 07-0026] gi|297174974|gb|EFH34321.1| translation factor [Brucella abortus bv. 5 str. B3196] Length = 323 Score = 356 bits (915), Expect = 2e-96, Method: Composition-based stats. Identities = 143/319 (44%), Positives = 193/319 (60%), Gaps = 7/319 (2%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D A+ +A E L G +AIPTETVYGLA D+ N + ++ K RP NPLI HV I Sbjct: 8 DDGAVLRAVEVLRRGGLVAIPTETVYGLAADAANGEGVAGIFAAKGRPQFNPLIAHVDGI 67 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS----TTDIHPLSTANLKTACFRVPCGF 123 +M ++ + DP+S LA+ FWPGPLT+VL L IHPL TA L T R+P G Sbjct: 68 AMAGRYVAFDPVSRRLAEAFWPGPLTIVLPLKERQDTERPIHPLVTAGLSTLAVRMPHGR 127 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + +I P+A PSAN SG+IS T+ + + I LI+D G +G+ESTIV V Sbjct: 128 VRDVITALDSPVAAPSANTSGRISPTSAAAVAGD-LGGRIDLILDAGPCGVGVESTIVKV 186 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 ++ V +LRPGGL E ++ + +L + + Q+PGM++SHYAP + +RL V Sbjct: 187 DGDQ-VHLLRPGGLAAEEIEAFLGQKLRRA-EHAAAIQAPGMMESHYAPDASMRLAVSDV 244 Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303 P EAL+ FG + A LNLS TG L+EAA NLF++M+ D +GA++IA IP Sbjct: 245 KPGEALLAFGPHRVAESNRAAAVLNLSATGDLREAAANLFDFMRRLDATGAATIAVEPIP 304 Query: 304 NHGLGIAINNRLERAAAPR 322 GLG AIN+RL+RAAAPR Sbjct: 305 LDGLGEAINDRLKRAAAPR 323 >gi|167038488|ref|YP_001666066.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116883|ref|YP_004187042.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166857322|gb|ABY95730.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929974|gb|ADV80659.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 354 Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats. Identities = 101/338 (29%), Positives = 164/338 (48%), Gaps = 26/338 (7%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + A + + G +A PTETVYG+ +S N AI++++ K RP NPLI H++++ Sbjct: 15 ELIDFAAKVIKEGGLVAFPTETVYGIGANSFNEEAIKKIFIAKGRPQDNPLIVHIAELEQ 74 Query: 70 VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + V + L K FWPGPLTL+ + + ++TA + T R+P L Sbjct: 75 IYDLVKEVPQKAKTLMKKFWPGPLTLIF--KKSQKVPYVNTAGMDTVAIRMPSNTIAHLL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I+ P++ PSAN SG+ S T+ H++ + ++ +IIDGG +G+EST++++ EK Sbjct: 133 IKRAEVPISAPSANVSGKPSPTDASHVI-EDLYGKVDVIIDGGKCDVGVESTVLDLT-EK 190 Query: 188 KVRILRPGGLEIETLKRAIS-VELEYCV----DETSTPQSPGMLKSHYAPRSQVRLRAIH 242 ILRPG + +E L+ I VE++ + E P+SPGM HY+P ++V + Sbjct: 191 VPVILRPGAVTLEMLREVIGNVEVDPSLLKKPQEDLKPKSPGMKYKHYSPNAEVYIVTGD 250 Query: 243 VNPREALIR---------------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMK 287 + I+ V + + + + A NLF ++ Sbjct: 251 LEKVVKKIQELTEEQLKYGKKVGIMATVQTSTQYEKGEIIVVGDRNRPETIAKNLFEVLR 310 Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325 D G I S +G+AI NRLE+AA + S Sbjct: 311 QFDKKGVDVIFAESFEYDNIGLAIMNRLEKAAGYKEIS 348 >gi|46908713|ref|YP_015102.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes serotype 4b str. F2365] gi|47094309|ref|ZP_00232012.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes str. 4b H7858] gi|226225089|ref|YP_002759196.1| yeast translation initiation protein [Listeria monocytogenes Clip81459] gi|254825336|ref|ZP_05230337.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes FSL J1-194] gi|254853930|ref|ZP_05243278.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes FSL R2-503] gi|254932217|ref|ZP_05265576.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes HPB2262] gi|254993431|ref|ZP_05275621.1| yeast translation initiation protein [Listeria monocytogenes FSL J2-064] gi|255519763|ref|ZP_05387000.1| yeast translation initiation protein [Listeria monocytogenes FSL J1-175] gi|300764959|ref|ZP_07074947.1| hypothetical protein LMHG_11591 [Listeria monocytogenes FSL N1-017] gi|46881985|gb|AAT05279.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes serotype 4b str. F2365] gi|47017319|gb|EAL08149.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes str. 4b H7858] gi|225877551|emb|CAS06265.1| Putative yeast translation initiation protein [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258607318|gb|EEW19926.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes FSL R2-503] gi|293583772|gb|EFF95804.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes HPB2262] gi|293594579|gb|EFG02340.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes FSL J1-194] gi|300514259|gb|EFK41318.1| hypothetical protein LMHG_11591 [Listeria monocytogenes FSL N1-017] gi|328465145|gb|EGF36413.1| translation initiation protein [Listeria monocytogenes 1816] gi|328471149|gb|EGF42053.1| translation initiation protein [Listeria monocytogenes 220] gi|332312971|gb|EGJ26066.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes str. Scott A] Length = 345 Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats. Identities = 109/330 (33%), Positives = 171/330 (51%), Gaps = 19/330 (5%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 ++A + L +G +A PTETVYGL D+ N A++++YE K RP+ NPLI H++ + Sbjct: 19 QEAAKLLRSGECVAFPTETVYGLGADATNQAAVQKIYEAKGRPSDNPLIVHIARREQMDP 78 Query: 73 HASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIET 130 + P+ ++ L + FWPGPLT++L L + + +A L T R+P LI+ Sbjct: 79 FVASYPVKAIQLMEKFWPGPLTVILPLKKDS-LATNVSAGLSTVGVRMPEHPVSLALIDA 137 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 P+A PSANRSG+ S T H++ + +I IIDGG + +GLEST+++ + V Sbjct: 138 ANIPVAAPSANRSGKPSPTTASHVI-EDLDGKIAGIIDGGATGVGLESTVIDCSLDIPV- 195 Query: 191 ILRPGGLEIETLKRAISVELEYC--VDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248 ILRPGG+ E +++ I ET P++PGM +HYAP++ V L + ++ Sbjct: 196 ILRPGGVTKEQIEQIIGPVDIATNNTKETEKPKAPGMKYTHYAPKAPVYLIEGSIQFWQS 255 Query: 249 LI--------RFGNVPIKNIENAIISLN----LSKTGKLKEAAFNLFNYMKIADDSGASS 296 I + G + K + N + + L E A +L+ ++ D + Sbjct: 256 EINKAEAANKKLGILATKELINQLNTSGTIEITGSINALDEIATSLYKGLRAFDHADVDV 315 Query: 297 IAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326 I P LG AI NRLE+AA R + Sbjct: 316 IFAEVYPETELGAAIMNRLEKAAGNRRIRE 345 >gi|306842310|ref|ZP_07474970.1| Sua5/YciO/YrdC/YwlC family protein [Brucella sp. BO2] gi|306287567|gb|EFM59023.1| Sua5/YciO/YrdC/YwlC family protein [Brucella sp. BO2] Length = 323 Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats. Identities = 144/319 (45%), Positives = 193/319 (60%), Gaps = 7/319 (2%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D A+ +A E L G +AIPTETVYGLA D+ N + ++ K RP NPLI HV I Sbjct: 8 DDGAVLRAVEVLRRGGLVAIPTETVYGLAADAANGEGVAGIFAAKGRPQFNPLIAHVDGI 67 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS----TTDIHPLSTANLKTACFRVPCGF 123 +M ++ + DP+S LA+ FWPGPLT+VL L IHPL TA L T R+P G Sbjct: 68 AMAGRYVAFDPVSRRLAEAFWPGPLTIVLPLKERQDTDRPIHPLVTAGLSTLAVRMPHGR 127 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + +I P+A PSAN SG+IS T+ + + I LI+D G IG+ESTIV V Sbjct: 128 VRDVITALDSPVAAPSANTSGRISPTSAAAVAGD-LGGRIDLILDAGPCGIGVESTIVKV 186 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 ++ V +LRPGGL E ++ + +L + + Q+PGM++SHYAP + +RL V Sbjct: 187 DGDQ-VHLLRPGGLAAEEIEAFLGQKLRRA-EHAAAIQAPGMMESHYAPDASMRLAVSDV 244 Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303 P EAL+ FG + A LNLS TG L+EAA NLF++M+ D +GA++IA IP Sbjct: 245 KPGEALLAFGPHRVAESNRAAAVLNLSATGDLREAAANLFDFMRRLDATGAATIAVEPIP 304 Query: 304 NHGLGIAINNRLERAAAPR 322 GLG AIN+RL+RAAAPR Sbjct: 305 LDGLGEAINDRLKRAAAPR 323 >gi|307265643|ref|ZP_07547196.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter wiegelii Rt8.B1] gi|326389253|ref|ZP_08210821.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter ethanolicus JW 200] gi|306919287|gb|EFN49508.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter wiegelii Rt8.B1] gi|325994616|gb|EGD53040.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter ethanolicus JW 200] Length = 354 Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats. Identities = 101/338 (29%), Positives = 162/338 (47%), Gaps = 26/338 (7%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + A + G +A PTETVYG+ +S N A+++++ K RP NPLI H++++ Sbjct: 15 ELIDFAANVIREGGLVAFPTETVYGIGANSFNEEAVKKIFIAKGRPQDNPLIVHIAELKQ 74 Query: 70 VKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + P L K FWPGPLTL+ + + ++TA + T R+P L Sbjct: 75 IYDLVEDVPQKAKTLMKKFWPGPLTLIF--KKSEKVPYVNTAGMDTVAIRMPSNPIAHLL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I+ P++ PSAN SG+ S T+ H++ + ++ +IIDGG +G+EST++++ EK Sbjct: 133 IKRAEVPISAPSANVSGKPSPTDASHVI-EDLYGKVDVIIDGGKCDVGVESTVLDLT-EK 190 Query: 188 KVRILRPGGLEIETLKRAIS-VELEYCV----DETSTPQSPGMLKSHYAPRSQVRLRAIH 242 ILRPG + +E LK I VE++ + E P+SPGM HY+P ++V + Sbjct: 191 VPVILRPGAVTLEMLKEVIGNVEVDPSLLKKPKEDLKPKSPGMKYKHYSPNAEVYIVTGD 250 Query: 243 VNPREALIR---------------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMK 287 + I+ V + + + + A NLF ++ Sbjct: 251 LEKVVKKIQELTEEQLKYGKKVGIMATVQTSTQYEKGEIIVVGDRNRPETIAKNLFAVLR 310 Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325 D G I S +G+AI NRLE+AA + S Sbjct: 311 QFDKKGVDVIFAESFEYDNIGLAIMNRLEKAAGYKEIS 348 >gi|254693189|ref|ZP_05155017.1| Sua5/YciO/YrdC/YwlC protein family [Brucella abortus bv. 3 str. Tulya] gi|261213430|ref|ZP_05927711.1| Sua5/YciO/YrdC/YwlC family protein [Brucella abortus bv. 3 str. Tulya] gi|260915037|gb|EEX81898.1| Sua5/YciO/YrdC/YwlC family protein [Brucella abortus bv. 3 str. Tulya] Length = 323 Score = 355 bits (913), Expect = 4e-96, Method: Composition-based stats. Identities = 143/319 (44%), Positives = 192/319 (60%), Gaps = 7/319 (2%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D A+ +A E L G +AIPTETVYGLA D+ N + ++ K RP NPLI HV I Sbjct: 8 DDGAVLRAVEVLRRGGLVAIPTETVYGLAADAANGEGVAGIFAAKGRPQFNPLIAHVDGI 67 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS----TTDIHPLSTANLKTACFRVPCGF 123 +M ++ + DP+S LA+ FWPGPLT+VL L IHPL TA L T R+P G Sbjct: 68 AMAGRYVAFDPVSRRLAEAFWPGPLTIVLPLKERQDTERPIHPLVTAGLSTLAVRMPHGR 127 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + +I P A PSAN SG+IS T+ + + I LI+D G +G+ESTIV V Sbjct: 128 VRDVITALDSPAAAPSANTSGRISPTSAAAVAGD-LGGRIDLILDAGPCGVGVESTIVKV 186 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 ++ V +LRPGGL E ++ + +L + + Q+PGM++SHYAP + +RL V Sbjct: 187 DGDQ-VHLLRPGGLAAEEIEAFLGQKLRRA-EHAAAIQAPGMMESHYAPDASMRLAVSDV 244 Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303 P EAL+ FG + A LNLS TG L+EAA NLF++M+ D +GA++IA IP Sbjct: 245 KPGEALLAFGPHRVAESNRAAAVLNLSATGDLREAAANLFDFMRRLDATGAATIAVEPIP 304 Query: 304 NHGLGIAINNRLERAAAPR 322 GLG AIN+RL+RAAAPR Sbjct: 305 LDGLGEAINDRLKRAAAPR 323 >gi|254437009|ref|ZP_05050503.1| Sua5/YciO/YrdC/YwlC family protein, putative [Octadecabacter antarcticus 307] gi|198252455|gb|EDY76769.1| Sua5/YciO/YrdC/YwlC family protein, putative [Octadecabacter antarcticus 307] Length = 315 Score = 355 bits (913), Expect = 4e-96, Method: Composition-based stats. Identities = 143/318 (44%), Positives = 182/318 (57%), Gaps = 13/318 (4%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 +TD L KA L G +A PTETVYGL VD+ N A+ RLY K RP+ NPLI H+ Sbjct: 10 VTDRTELDKAACVLAGGGLVAFPTETVYGLGVDACNSDAVARLYLAKGRPSFNPLIVHIG 69 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 I ++ D +L LA+ FWPG LTLVL L + I PL TA L T RVP Sbjct: 70 SIEAAQQFVDFDDTALALAQAFWPGALTLVLPLRHDSTISPLVTAGLGTLAIRVPDHGVA 129 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 +L+ +G P+A PSAN SGQ+S T H+ + I +IDGG +GLESTI+ ++ Sbjct: 130 NRLLAAFGGPIAAPSANPSGQVSPTKFAHV-RDLMSGRIDGVIDGGDCGVGLESTIIAMK 188 Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244 +LR GGL +E ++ A+ L ETS P SPG L SHYAP+ VRL A V Sbjct: 189 --PVPTLLRAGGLPVEAIEAALGYNLA-LTGETSAPSSPGQLASHYAPKGTVRLNARSVE 245 Query: 245 PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPN 304 E L+ FG V +NLS +G L +AA LF+ + + GA+ IA S IP+ Sbjct: 246 TGETLLGFGPVEA--------VINLSSSGDLVQAAAGLFDALHQLNAMGAARIAVSPIPD 297 Query: 305 HGLGIAINNRLERAAAPR 322 HGLG AIN+RL RAAAPR Sbjct: 298 HGLGRAINDRLRRAAAPR 315 >gi|16804579|ref|NP_466064.1| hypothetical protein lmo2541 [Listeria monocytogenes EGD-e] gi|224503219|ref|ZP_03671526.1| hypothetical protein LmonFR_11993 [Listeria monocytogenes FSL R2-561] gi|255026494|ref|ZP_05298480.1| hypothetical protein LmonocytFSL_09443 [Listeria monocytogenes FSL J2-003] gi|255028536|ref|ZP_05300487.1| hypothetical protein LmonL_03806 [Listeria monocytogenes LO28] gi|284802979|ref|YP_003414844.1| hypothetical protein LM5578_2736 [Listeria monocytogenes 08-5578] gi|284996120|ref|YP_003417888.1| hypothetical protein LM5923_2685 [Listeria monocytogenes 08-5923] gi|16412029|emb|CAD00619.1| lmo2541 [Listeria monocytogenes EGD-e] gi|284058541|gb|ADB69482.1| hypothetical protein LM5578_2736 [Listeria monocytogenes 08-5578] gi|284061587|gb|ADB72526.1| hypothetical protein LM5923_2685 [Listeria monocytogenes 08-5923] Length = 345 Score = 355 bits (913), Expect = 4e-96, Method: Composition-based stats. Identities = 114/336 (33%), Positives = 175/336 (52%), Gaps = 19/336 (5%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 ++ ++A + L G +A PTETVYGL D+ N A++++YE K RP+ NPLI H++ Sbjct: 13 SNQAIFQEAAKLLQGGECVAFPTETVYGLGADATNQAAVQKIYEAKGRPSDNPLIVHIAR 72 Query: 67 ISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT- 124 + + AS ++ L + FWPGPLT++L L + + +A L T R+P Sbjct: 73 REQMDQFVASYPAKAIQLMEKFWPGPLTVILPLKKDS-LATNVSAGLSTVGVRMPEHPVS 131 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 LI T P+A PSANRSG+ S T H++ + +I IIDGG + +GLEST+++ Sbjct: 132 LALIGTANIPIAAPSANRSGKPSPTTASHVI-EDLDGKIAGIIDGGATGVGLESTVIDCS 190 Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYC--VDETSTPQSPGMLKSHYAPRSQVRLRAIH 242 E + ILRPGG+ E +++ I ET P++PGM +HYAP++ V L Sbjct: 191 LEIPI-ILRPGGVTKEQIEQIIGPVDISTNNTKETEKPKAPGMKYTHYAPKAPVYLIEGS 249 Query: 243 VNPREALI--------RFGNVPIKNIENAI-ISLNLSKTGK---LKEAAFNLFNYMKIAD 290 ++ I + G + K + N + S + TG L E A +L+ ++ D Sbjct: 250 TQFWQSEINKAEAANKKLGILATKELINQLNTSGTIETTGSIKALDEIATSLYKGLRAFD 309 Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326 + I P LG AI NRLE+AA R ++ Sbjct: 310 HADVDIIFAEVYPETELGAAIMNRLEKAAGNRRITE 345 >gi|255016728|ref|ZP_05288854.1| hypothetical protein LmonF_00646 [Listeria monocytogenes FSL F2-515] Length = 344 Score = 355 bits (913), Expect = 4e-96, Method: Composition-based stats. Identities = 114/336 (33%), Positives = 175/336 (52%), Gaps = 19/336 (5%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 ++ ++A + L G +A PTETVYGL D+ N A++++YE K RP+ NPLI H++ Sbjct: 12 SNQAIFQEAAKLLQGGECVAFPTETVYGLGADATNQAAVQKIYEAKGRPSDNPLIVHIAR 71 Query: 67 ISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT- 124 + + AS ++ L + FWPGPLT++L L + + +A L T R+P Sbjct: 72 REQMDQFVASYPAKAIQLMEKFWPGPLTVILPLKKDS-LATNVSAGLSTVGVRMPEHPVS 130 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 LI T P+A PSANRSG+ S T H++ + +I IIDGG + +GLEST+++ Sbjct: 131 LALIGTANIPIAAPSANRSGKPSPTTASHVI-EDLDGKIAGIIDGGATGVGLESTVIDCS 189 Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYC--VDETSTPQSPGMLKSHYAPRSQVRLRAIH 242 E + ILRPGG+ E +++ I ET P++PGM +HYAP++ V L Sbjct: 190 LEIPI-ILRPGGVTKEQIEQIIGPVDISTNNTKETEKPKAPGMKYTHYAPKAPVYLIEGS 248 Query: 243 VNPREALI--------RFGNVPIKNIENAI-ISLNLSKTGK---LKEAAFNLFNYMKIAD 290 ++ I + G + K + N + S + TG L E A +L+ ++ D Sbjct: 249 TQFWQSEINKAEAANKKLGILATKELINQLNTSGTIETTGSIKALDEIATSLYKGLRAFD 308 Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326 + I P LG AI NRLE+AA R ++ Sbjct: 309 HADVDIIFAEVYPETELGAAIMNRLEKAAGNRRITE 344 >gi|256060542|ref|ZP_05450710.1| Sua5/YciO/YrdC/YwlC protein family [Brucella neotomae 5K33] gi|261324536|ref|ZP_05963733.1| Sua5/YciO/YrdC/YwlC family protein [Brucella neotomae 5K33] gi|261300516|gb|EEY04013.1| Sua5/YciO/YrdC/YwlC family protein [Brucella neotomae 5K33] Length = 323 Score = 355 bits (913), Expect = 5e-96, Method: Composition-based stats. Identities = 143/319 (44%), Positives = 193/319 (60%), Gaps = 7/319 (2%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D A+ +A E L G +AIPTETVYGLA D+ N + ++ K RP NPLI HV I Sbjct: 8 DDGAVLRAVEVLRRGGLVAIPTETVYGLAADAANGEGVAGIFAAKGRPQFNPLIAHVDGI 67 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS----TTDIHPLSTANLKTACFRVPCGF 123 +M ++ + DP+S LA+ FWPGPLT+VL L IHPL TA L T R+P G Sbjct: 68 AMAGRYVAFDPVSRRLAEAFWPGPLTIVLPLKERQDTERPIHPLVTAGLSTLAVRMPHGR 127 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + +I P+A PSAN SG+IS T+ + + I LI+D G +G+ESTIV V Sbjct: 128 VRDVITALDSPVAAPSANTSGRISPTSAAAVAGD-LGGRIDLILDAGPCGVGVESTIVKV 186 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 ++ V +LRPGGL E ++ + +L + + Q+PGM++SHYAP + +RL V Sbjct: 187 DGDQ-VYLLRPGGLAAEEIEAFLGQKLRRA-EHAAAIQAPGMMESHYAPEASMRLAVSDV 244 Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303 P EAL+ FG + A LNLS TG L+EAA NLF++M+ D +GA++IA IP Sbjct: 245 KPGEALLAFGPHRVAESNRAAAVLNLSATGDLREAAANLFDFMRRLDATGAATIAVEPIP 304 Query: 304 NHGLGIAINNRLERAAAPR 322 GLG AIN+RL+RAAAPR Sbjct: 305 LDGLGEAINDRLKRAAAPR 323 >gi|15964621|ref|NP_384974.1| hypothetical protein SMc00984 [Sinorhizobium meliloti 1021] gi|307309367|ref|ZP_07589030.1| Sua5/YciO/YrdC/YwlC family protein [Sinorhizobium meliloti BL225C] gi|307320103|ref|ZP_07599524.1| Sua5/YciO/YrdC/YwlC family protein [Sinorhizobium meliloti AK83] gi|15073799|emb|CAC45440.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021] gi|306894318|gb|EFN25083.1| Sua5/YciO/YrdC/YwlC family protein [Sinorhizobium meliloti AK83] gi|306900236|gb|EFN30854.1| Sua5/YciO/YrdC/YwlC family protein [Sinorhizobium meliloti BL225C] Length = 324 Score = 355 bits (912), Expect = 5e-96, Method: Composition-based stats. Identities = 158/319 (49%), Positives = 211/319 (66%), Gaps = 2/319 (0%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 I A+ KAC L G P+AIPTETVYGLA D+ P AI R+YE+K RP NPLICHV Sbjct: 8 RIEPERAIEKACAVLSDGEPVAIPTETVYGLAADATTPDAISRIYEMKGRPRFNPLICHV 67 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 D++M + H + DP+S LA+ FWPGPLTL+L + +H L++A L T R+P GF+ Sbjct: 68 CDLAMAEAHVTFDPVSRRLAEAFWPGPLTLILPQRRESTVHTLASAGLDTLGIRMPDGFS 127 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 +++I +G PLA PSAN SG+IS T+ H+ + + + LI+D G + IGLESTIV V+ Sbjct: 128 RRVIARFGRPLAAPSANTSGKISPTSAAHV-QADLGSRLKLILDAGPAAIGLESTIVKVE 186 Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244 ++R+LRPGGL+ ++ + +E + ++PGML SHYAP + VRL A V Sbjct: 187 -NGRLRLLRPGGLDAAEIEALTGLAIERPEAAGAVIEAPGMLASHYAPGAAVRLDADEVR 245 Query: 245 PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPN 304 EALIRFG + +A I L+LS G L+EAA NLF+YMK AD SGA++IAF IP+ Sbjct: 246 KGEALIRFGGEALPGEADAAIVLDLSPGGSLREAAANLFDYMKKADASGAATIAFGPIPS 305 Query: 305 HGLGIAINNRLERAAAPRN 323 GLG AI +RL+RAAAPR Sbjct: 306 EGLGEAIIDRLQRAAAPRG 324 >gi|319650889|ref|ZP_08005026.1| Sua5/yciO/yrdC/ywlC family protein [Bacillus sp. 2_A_57_CT2] gi|317397487|gb|EFV78188.1| Sua5/yciO/yrdC/ywlC family protein [Bacillus sp. 2_A_57_CT2] Length = 347 Score = 355 bits (912), Expect = 6e-96, Method: Composition-based stats. Identities = 105/324 (32%), Positives = 161/324 (49%), Gaps = 18/324 (5%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 +A + L +A PTETVYGL ++ N A+R+++E K RP+ NPLI H++D + Sbjct: 23 QAADLLKKNEVVAFPTETVYGLGGNAENDEAVRKIFEAKGRPSDNPLIIHIADKGKLDAF 82 Query: 74 A-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY 131 + + L FWPGPLTL+ +L H +TA+L T R+P L+ Sbjct: 83 VTEIPQNAQALMDRFWPGPLTLIFNLKEGVLSH-YATADLSTVAVRMPDHPVALALLNKT 141 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 G P+A PSANRSG+ S T H+ + I ++DGG + +G+EST+V+ + V I Sbjct: 142 GLPIAAPSANRSGRPSPTTADHVW-EDLNGRIAGLVDGGPTGVGVESTVVDCTGDVPV-I 199 Query: 192 LRPGGLEIETLKRAIS--VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI-------- 241 LRPGG+ E L+ A+ + DE+ P+SPGM HYAP + + L Sbjct: 200 LRPGGITREQLEEAVGEIIVDPALADESQAPKSPGMKYRHYAPDAPLYLVEGTKEDIQYF 259 Query: 242 HVNPREALIRFGNVPIK---NIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIA 298 + ++ + G + A + KL+ A +L+ ++ + + A I Sbjct: 260 VEDKKKEGLSVGVLTTSENLEFYRADFIYACGQRDKLETVASSLYEALRYFNTTNADIIF 319 Query: 299 FSSIPNHGLGIAINNRLERAAAPR 322 P G+G AI NRL +AA R Sbjct: 320 CEMFPGEGVGHAIMNRLMKAAGHR 343 >gi|46200975|ref|ZP_00207919.1| COG0009: Putative translation factor (SUA5) [Magnetospirillum magnetotacticum MS-1] Length = 328 Score = 355 bits (911), Expect = 6e-96, Method: Composition-based stats. Identities = 123/306 (40%), Positives = 175/306 (57%), Gaps = 10/306 (3%) Query: 21 AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80 G +A PTETVYGL D+ + A+ +++ K RP+ NPLI HVS + + + Sbjct: 32 EGGLVAFPTETVYGLGGDATSDLAVAAIFKAKGRPSFNPLIAHVSSLDQAAALVEIGADA 91 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPS 139 LA+ FWPGPLTLVL + + + L++A L + R+P LI+ G PLA PS Sbjct: 92 HRLAERFWPGPLTLVLKRRAASPVSLLASAGLDSVAVRMPDHPTALALIKAAGRPLAAPS 151 Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEI 199 AN SG++S T H+ + + I +++DGG ++G+EST++++ E+ +LRPGG+ Sbjct: 152 ANLSGRVSPTRADHV-AQCLDGRIAMVLDGGPCRVGVESTVLDLT-EEPPTLLRPGGVTA 209 Query: 200 ETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKN 259 E L+ + L ++ P+SPG L SHYAP VRL A+ P EAL+ FG P Sbjct: 210 EELEAVLGRPLRRALETPDAPRSPGQLASHYAPSLPVRLDALAAEPGEALLGFGIAP--- 266 Query: 260 IENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 LNLS G L EAA +LF ++ D IA IP GLG+AIN+RL+RAA Sbjct: 267 ----ECVLNLSPKGDLDEAAAHLFAMLRALDRPDYLGIAVMPIPERGLGLAINDRLKRAA 322 Query: 320 APRNQS 325 APR+ S Sbjct: 323 APRSPS 328 >gi|167038769|ref|YP_001661754.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter sp. X514] gi|300913646|ref|ZP_07130963.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter sp. X561] gi|307723339|ref|YP_003903090.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter sp. X513] gi|166853009|gb|ABY91418.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter sp. X514] gi|300890331|gb|EFK85476.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter sp. X561] gi|307580400|gb|ADN53799.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter sp. X513] Length = 354 Score = 355 bits (911), Expect = 6e-96, Method: Composition-based stats. Identities = 102/338 (30%), Positives = 164/338 (48%), Gaps = 26/338 (7%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + A + + G +A PTETVYG+ +S N AI++++ K RP NPLI H++++ Sbjct: 15 ELIDFAAKVIKEGGLVAFPTETVYGIGANSFNEEAIKKIFIAKGRPQDNPLIVHIAELEQ 74 Query: 70 VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + V + L K FWPGPLTL+ + + ++TA + T R+P L Sbjct: 75 IYDLVKEVPQKAKTLMKKFWPGPLTLIF--KKSQKVPYVNTAGMDTVAIRMPSNTIAHLL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I+ P++ PSAN SG+ S T+ H++ + ++ +IIDGG +G+EST++++ EK Sbjct: 133 IKRAEVPISAPSANVSGKPSPTDASHVI-EDLYGKVDVIIDGGKCDVGVESTVLDLT-EK 190 Query: 188 KVRILRPGGLEIETLKRAIS-VELEYCV----DETSTPQSPGMLKSHYAPRSQVRLRAIH 242 ILRPG + +E LK I VE++ + E P+SPGM HY+P ++V + Sbjct: 191 VPVILRPGAVTLEMLKEVIGNVEVDPSLLKKPKEDLKPKSPGMKYKHYSPNAEVYIVTGD 250 Query: 243 VNPREALIR---------------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMK 287 + I+ V + + + + A NLF ++ Sbjct: 251 LEKVVKKIQELTEEQLKYGKKVGIMATVQTSTQYEKGEIIVVGDRNRPETIAKNLFAVLR 310 Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325 D G I S +G+AI NRLE+AA + S Sbjct: 311 QFDKKGVDVIFAESFGYDNIGLAIMNRLEKAAGYKEIS 348 >gi|168185917|ref|ZP_02620552.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum C str. Eklund] gi|169296125|gb|EDS78258.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum C str. Eklund] Length = 350 Score = 355 bits (911), Expect = 7e-96, Method: Composition-based stats. Identities = 102/338 (30%), Positives = 165/338 (48%), Gaps = 25/338 (7%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 + D + ++ E + G + PTETVYGL ++ + A+++++ K RP NPLI H Sbjct: 10 LDNLDEKVMEESGEIIRNGGLVVFPTETVYGLGANALDSEAVKKIFVAKGRPQDNPLIVH 69 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 ++D +M S+ P++ + FWPGPLT+++ + +++A L + R+P Sbjct: 70 IADFNMNDLVNSIPPIAEKIINKFWPGPLTVIMKKSPK--VPDVTSAGLDSIGIRMPSNL 127 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 ++LI+ G P+A PSAN SG+ S TN++ + + ++ II G +GLESTIV+ Sbjct: 128 VARELIKKAGVPIAAPSANISGKPSPTNIERCI-EDLDGKVESIIGGEKCDVGLESTIVD 186 Query: 183 VQCEKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVR 237 E ILRPGG+ +E LK I + D+ P++PGM HYAP++ V+ Sbjct: 187 CTVE-PPCILRPGGITLEMLKEVHPDIYIDPAIMKKADKDFKPKAPGMKYRHYAPKAPVK 245 Query: 238 LRAIHVNPREALIR------------FGNVPIKNIENA---IISLNLSKTGKLKEAAFNL 282 + A ++ A I G + N+ +L L A NL Sbjct: 246 IIAGNLEKSIAKINEMVQNYIDDDKIVGIMSTDEHVNSYSHATVKSLGSRKDLHSIAHNL 305 Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 F + D I + +GIAI NRL++AA Sbjct: 306 FKVLSEFDSEKVDIILSEAFEEEEIGIAIMNRLKKAAG 343 >gi|157694091|ref|YP_001488553.1| hypothetical protein BPUM_3340 [Bacillus pumilus SAFR-032] gi|157682849|gb|ABV63993.1| hypothetical protein BPUM_3340 [Bacillus pumilus SAFR-032] Length = 351 Score = 354 bits (910), Expect = 1e-95, Method: Composition-based stats. Identities = 106/330 (32%), Positives = 165/330 (50%), Gaps = 18/330 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 + +A L +A PTETVYGL +++ A+ ++YE K RP+ NPLI H++++ + Sbjct: 22 QIEQAALLLKQNEVVAFPTETVYGLGANAKETEAVMKIYEAKGRPSDNPLIVHIAEVEQL 81 Query: 71 KKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + A + + L K FWPG LT+VL + TA L T R+P +LI Sbjct: 82 HEFAQIESERAKALMKAFWPGALTIVLP-CKLGTLSKQVTAGLSTVGVRMPDHPIALELI 140 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 T G P+A PSANRSG+ S T H+ +S + I I+DGG + IG+EST+V+ E Sbjct: 141 RTAGLPIAAPSANRSGKPSPTQADHV-ASDLDGRIAGIVDGGSTGIGVESTVVSCVDEIP 199 Query: 189 VRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP- 245 V ILRPGG+ E L+ + + P SPGM +HYAP +++ L Sbjct: 200 V-ILRPGGITKEALEEVVGTVSIDPGLTKKDEAPVSPGMKYTHYAPEAKMYLFHGSDEEL 258 Query: 246 -------REALIRFGNVPIKNIEN---AIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 + ++ G + + ++ A + + K + A NL+ ++ D++ Sbjct: 259 QRHIQTYQTEGLKVGVLTTEEKKSLFAADVVFSCGWREKPETIAANLYRVLRQFDETDVD 318 Query: 296 SIAFSSIPNHGLGIAINNRLERAAAPRNQS 325 I + G+G AI NRL++AA R S Sbjct: 319 VIISETFSKQGVGSAIMNRLQKAAGGRTLS 348 >gi|256112929|ref|ZP_05453837.1| Sua5/YciO/YrdC/YwlC family protein [Brucella melitensis bv. 3 str. Ether] gi|265994364|ref|ZP_06106921.1| Sua5/YciO/YrdC/YwlC family protein [Brucella melitensis bv. 3 str. Ether] gi|262765477|gb|EEZ11266.1| Sua5/YciO/YrdC/YwlC family protein [Brucella melitensis bv. 3 str. Ether] Length = 323 Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats. Identities = 142/319 (44%), Positives = 194/319 (60%), Gaps = 7/319 (2%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D A+ +A E L G +AIPTETVYGLA D+ N + ++ K RP NPLI HV I Sbjct: 8 DDGAVLRAVEVLRRGGLVAIPTETVYGLAADAANGEGVAGIFAAKGRPQFNPLIAHVDGI 67 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS----TTDIHPLSTANLKTACFRVPCGF 123 +M ++ + DP+S LA+ FWPGPLT+VL L IHPL TA L T R+P G Sbjct: 68 AMAGRYVAFDPVSRRLAEAFWPGPLTIVLPLKERQDTERPIHPLVTAGLSTLAVRMPHGR 127 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + +I +A PSAN SG+IS T+ + + +I LI+D G +G+ESTIV V Sbjct: 128 VRDVITALDSSVAAPSANTSGRISPTSAAAVAGD-LGGQIDLILDAGPCGVGVESTIVKV 186 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 ++ V +LRPGGL E ++ + +L + ++ Q+PGM++SHYAP + +RL V Sbjct: 187 DGDQ-VHLLRPGGLAAEEIEAFLGQKLRRA-EHSAAIQAPGMMESHYAPDASMRLAVSDV 244 Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303 P EAL+ FG + A LNLS TG L+EAA NLF++M+ D +GA++IA IP Sbjct: 245 KPGEALLAFGPHRVAESNRAAAVLNLSATGDLREAAANLFDFMRRLDATGAATIAVEPIP 304 Query: 304 NHGLGIAINNRLERAAAPR 322 GLG AIN+RL+RAAAPR Sbjct: 305 LDGLGEAINDRLKRAAAPR 323 >gi|260437528|ref|ZP_05791344.1| Sua5/YciO/YrdC/YwlC family protein [Butyrivibrio crossotus DSM 2876] gi|292810161|gb|EFF69366.1| Sua5/YciO/YrdC/YwlC family protein [Butyrivibrio crossotus DSM 2876] Length = 351 Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats. Identities = 113/340 (33%), Positives = 167/340 (49%), Gaps = 26/340 (7%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 I + ++ A E + G +A PTETVYGL DS +P A ++Y K RP+ NPLI H+ Sbjct: 12 EIENDKIIKTAAEIISRGGLVAFPTETVYGLGGDSFDPAAAEKIYAAKGRPSDNPLIVHI 71 Query: 65 SDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 S+ + K + V ++ LA FWPGPLT+++ + + T L T R+P Sbjct: 72 SEFDDIYKLSDEVPEIAKVLADKFWPGPLTMIVKKNKSVPV--TVTGGLDTVAVRLPSHK 129 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 +KLI+ G +A PSAN SG+ S T KH++ + I +IID G +IGLESTIV+ Sbjct: 130 VARKLIKESGTFIAAPSANISGRPSPTTAKHVI-DDLNGRIDMIIDDGSIEIGLESTIVD 188 Query: 183 VQCEKKVRILRPGGLEIETLKRAIS-----VELEYCVDETSTPQSPGMLKSHYAPRSQV- 236 + + V ILRPG + E L+ + L V E P++PGM HYAP++++ Sbjct: 189 LTEDVPV-ILRPGYVTFEMLEETVGKVRLDKALMTGVKENVKPKAPGMKYRHYAPKAELT 247 Query: 237 -----------RLRAIHVNPREALIRFGNVPIKNIENAIIS---LNLSKTGKLKEAAFNL 282 R+ + + G + + + I S L L + E A NL Sbjct: 248 IIEGSPEKTVARIEELVKEAERKGQKAGIMLSEENFDKICSDYKLCLGSSSDENEIARNL 307 Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 F ++ DD I G+G AI NRL +AA + Sbjct: 308 FACLRKFDDMDIDVIFSEGFSEEGIGQAIMNRLLKAAGHK 347 >gi|148559471|ref|YP_001258429.1| Sua5/YciO/YrdC family protein [Brucella ovis ATCC 25840] gi|148370728|gb|ABQ60707.1| Sua5/YciO/YrdC family protein [Brucella ovis ATCC 25840] Length = 323 Score = 353 bits (908), Expect = 1e-95, Method: Composition-based stats. Identities = 142/319 (44%), Positives = 193/319 (60%), Gaps = 7/319 (2%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D A+ +A E L G +AIPTETVYGLA D+ N + ++ K RP NPLI HV I Sbjct: 8 DDGAVLRAVEVLRRGGLVAIPTETVYGLAADAANGEGVAGIFAAKGRPQFNPLIAHVDGI 67 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS----TTDIHPLSTANLKTACFRVPCGF 123 +M ++ + DP+S LA+ FWPGPLT+VL L IHPL TA L T R+P G Sbjct: 68 AMAGRYVAFDPVSRRLAEAFWPGPLTIVLPLKERQDTERPIHPLVTAGLSTLAVRMPHGR 127 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + +I P+A PSAN SG+IS T+ + + I LI+D G +G+ESTIV V Sbjct: 128 VRDVITALDSPVAAPSANTSGRISPTSAAAVAGD-LGGRIDLILDAGPCSVGVESTIVKV 186 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 ++ V +LRPGGL E ++ + +L + + Q+PGM++SHYAP + +RL V Sbjct: 187 DGDQ-VHLLRPGGLAAEEIEAFLGQKLRRA-EHAAAIQAPGMMESHYAPDASMRLAVSDV 244 Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303 P EAL+ FG + A LNLS TG L+EAA NLF++M+ + +GA++IA IP Sbjct: 245 KPGEALLAFGPHRVAESNRAAAVLNLSATGDLREAAANLFDFMRRLNATGAATIAVEPIP 304 Query: 304 NHGLGIAINNRLERAAAPR 322 GLG AIN+RL+RAAAPR Sbjct: 305 LDGLGEAINDRLKRAAAPR 323 >gi|253681142|ref|ZP_04861945.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum D str. 1873] gi|253562991|gb|EES92437.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum D str. 1873] Length = 349 Score = 353 bits (908), Expect = 1e-95, Method: Composition-based stats. Identities = 100/338 (29%), Positives = 169/338 (50%), Gaps = 25/338 (7%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 + D + +A + L G +A PTETVYGL ++ + A+++++ K RP NPLI H Sbjct: 10 LKNLDVKVIEEAGKALREGGLVAFPTETVYGLGANALDSEAVKKIFIAKGRPQDNPLIVH 69 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 ++D ++ + ++ + K FWPGPLT+++ + I +++A L++ R+P Sbjct: 70 IADFNLDNLVEEIPVIAKKIMKKFWPGPLTIIM--KKSNKIPYVTSAGLESVGIRMPSNV 127 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 ++LI+ G P+A PSAN SG+ S TN++ + + + II G +GLESTIV+ Sbjct: 128 VARELIKKSGVPIAAPSANISGKPSPTNIERCI-EDLNGRVEYIIGGEKCDVGLESTIVD 186 Query: 183 VQCEKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVR 237 +LRPGG+ +E L+ I + D+ P++PGM HYAP++ V+ Sbjct: 187 CTVN-PPCVLRPGGITLEMLREIEPEIYIDPAIMKKADKDFKPKAPGMKYRHYAPKAPVK 245 Query: 238 LRAIHVNPREALI------------RFGNVPIKNI---ENAIISLNLSKTGKLKEAAFNL 282 + A +++ A I + G + + + I +L L A NL Sbjct: 246 IIAGNLSKSIAKINEMVQNYIDDGKKVGIMATEETRFKYSNAIIKSLGSRNDLYSIAHNL 305 Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 F + D+ I + +GIAI NRL++AA Sbjct: 306 FKILSEFDNENVDIILSEAFQEEEIGIAIMNRLKKAAG 343 >gi|90961568|ref|YP_535484.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus salivarius UCC118] gi|227890654|ref|ZP_04008459.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus salivarius ATCC 11741] gi|90820762|gb|ABD99401.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus salivarius UCC118] gi|227867592|gb|EEJ75013.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus salivarius ATCC 11741] gi|300214393|gb|ADJ78809.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus salivarius CECT 5713] Length = 336 Score = 353 bits (908), Expect = 1e-95, Method: Composition-based stats. Identities = 116/338 (34%), Positives = 173/338 (51%), Gaps = 24/338 (7%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I I + +A + L G +A PTETVYGL D+ N A++R+Y K RP+ NPL Sbjct: 1 MLITKIYKPSEFNEAAKELRLGELVAFPTETVYGLGADATNEQAVKRVYLAKGRPSDNPL 60 Query: 61 ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I VS + MVK+ S+ + + FWPG LT+VL + + + T LKTA FR+ Sbjct: 61 IVTVSSLEMVKRFVPSLSKEVEKIIEKFWPGSLTIVLKIKDGS-LSKTVTGGLKTAAFRM 119 Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T LI G+P+ PSAN SG+ S T +H+ + I I+D G + +G+ES Sbjct: 120 PKNETTLNLITALGNPIVGPSANSSGKPSPTTAQHVY-HDLEGRIAGILDDGPTDVGVES 178 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQ 235 TI+++ E ILRPG + E +++ I E+ ++ V E P++PGM HYAP +Q Sbjct: 179 TIIDMSTEIP-TILRPGAVTAEEIEKVIGKEVYSDKHKVKENEIPKAPGMKYKHYAPSAQ 237 Query: 236 VRLR-----------AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFN 284 V + A + ++ V K +EN SL ++ AA NLF Sbjct: 238 VLIVNKDNWNSALQWANENKNQVGILADDEVLSKALENKTYSLG----ENVESAAKNLFA 293 Query: 285 YMKIADDSG-ASSIAFSSIPNHGLGIAINNRLERAAAP 321 ++ DD I + P G+G+A NRL+++A Sbjct: 294 GLRYFDDDNQIKYILAEAFPEEGVGLAYMNRLKKSAGN 331 >gi|331270448|ref|YP_004396940.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum BKT015925] gi|329126998|gb|AEB76943.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum BKT015925] Length = 349 Score = 353 bits (908), Expect = 2e-95, Method: Composition-based stats. Identities = 102/338 (30%), Positives = 170/338 (50%), Gaps = 25/338 (7%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 + D + +A E L G +A PTETVYGL ++ + A+++++ K RP NPLI H Sbjct: 10 LKNLDVKVIEEAGEVLREGGLVAFPTETVYGLGANALDSEAVKKIFIAKGRPQDNPLIVH 69 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 ++D ++ V ++ + + FWPGPLTL++ + +I +++A L++ R+P Sbjct: 70 IADFNLDGLVEEVPSIAKKIMEKFWPGPLTLIM--KKSREIPYVTSAGLESVGIRMPSNI 127 Query: 124 -TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 ++LI+ G P+A PSAN SG+ S TN++ + + + + II G ++GLESTIV+ Sbjct: 128 VARELIKKSGVPIAAPSANISGKPSPTNIERCI-EDLNERVEYIIGGEKCEVGLESTIVD 186 Query: 183 VQCEKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVR 237 +LRPGG+ +E L+ I + D+ P++PGM HYAP++ V+ Sbjct: 187 CTIN-PPCVLRPGGITLEMLREIEPEIYIDPAIMKKADKDFKPKAPGMKYRHYAPKAPVK 245 Query: 238 LRAIHVNPREALI------------RFGNVPIKNIENA---IISLNLSKTGKLKEAAFNL 282 + A ++ A I + G + + + I +L L A NL Sbjct: 246 IIAGNLVKSIAKINEMVQNYIDDGKKVGIMATEETKGKYSNAIIKSLGSREDLHTIAHNL 305 Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 F + D I + +GIAI NRL++AA Sbjct: 306 FKTLSEFDSENVDIILSEAFKEEEIGIAIMNRLKKAAG 343 >gi|323704817|ref|ZP_08116394.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323535743|gb|EGB25517.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 349 Score = 353 bits (908), Expect = 2e-95, Method: Composition-based stats. Identities = 106/339 (31%), Positives = 171/339 (50%), Gaps = 26/339 (7%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D N + +A L G +A PTETVYG+ +S NP A+ +++ K RP NPLI H+S+ Sbjct: 13 DINLIDEAASILLNGGLVAFPTETVYGIGANSLNPDAVAKIFIAKGRPQDNPLILHISEF 72 Query: 68 SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + K+A V +L LA+ FWPGPLT++ + + + ++TA + T R+P Sbjct: 73 QDLFKYAKNVPNDALKLARQFWPGPLTMIFE--KSDIVPSINTAGMNTVAIRMPSNKIAH 130 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LI+ G P++ PSAN SG+ S T+ H++S + + +IIDGG +G+EST+V++ Sbjct: 131 TLIKRAGIPVSAPSANLSGKPSPTDASHVISD-LYGRVDMIIDGGSCDVGVESTVVDMTG 189 Query: 186 EKKVRILRPGGLEIETLKRAIS-VELEYCVDET----STPQSPGMLKSHYAPRSQVRLRA 240 E ILRPGG+ E + + VE++ V + P+SPGM HY+P ++V + Sbjct: 190 EIP-TILRPGGITKEMIMGVVGSVEVDPIVYKKPSLDVKPKSPGMKYKHYSPDAEVYIVK 248 Query: 241 IHVNPREALI------------RFGNVPIKNI---ENAIISLNLSKTGKLKEAAFNLFNY 285 ++ I + G + + L + + + A NLF Sbjct: 249 GNIGDVIKKIQELTEFQLNNGKKVGIMATEQTCEKYRNGEVLVVGNRERPETIAKNLFRC 308 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQ 324 ++ D G + +G+AI NRLE+AA + Sbjct: 309 LREFDKKGVDVVYAEGFDYDEIGLAIMNRLEKAAGYKEI 347 >gi|14590350|ref|NP_142416.1| hypothetical protein PH0435 [Pyrococcus horikoshii OT3] gi|3256838|dbj|BAA29521.1| 340aa long hypothetical protein [Pyrococcus horikoshii OT3] Length = 340 Score = 353 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 120/343 (34%), Positives = 182/343 (53%), Gaps = 28/343 (8%) Query: 1 MQIM----SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56 M I+ S D LR A + + G +A PTETVYGL D+ N A+RR++E K RPA Sbjct: 1 MTIIINMRSGVDEVKLRIAAKLIREGKLVAFPTETVYGLGADALNERAVRRIFEAKGRPA 60 Query: 57 MNPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115 NPLI H++ S V + A V + L + FWPGPLT+VL + ++T L T Sbjct: 61 DNPLILHIAKFSQVYELAREVPEEAKVLVERFWPGPLTIVLPR--KDVVPDVTTGGLDTV 118 Query: 116 CFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174 R+P KLIE G P+A PSAN SG+ S T+ +H+ + +I IIDGG ++I Sbjct: 119 AIRMPANEIALKLIELSGKPIAAPSANISGKPSPTSAEHV-ADDFYGKIECIIDGGETRI 177 Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCV--DETSTPQSPGMLKSHYA 231 G+EST++++ E +LRPGGL +E +++ I V + V + TP+SPGM HYA Sbjct: 178 GVESTVIDLT-EHPPVLLRPGGLPLEEIEKVIGKVRIHPAVFGKKVDTPKSPGMKYKHYA 236 Query: 232 PRSQV------------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAA 279 P ++V ++ + +E + G + ++ NA L ++E A Sbjct: 237 PNAEVIVVEGPREKVKGKITELVKELKERGKKVGVIGSESY-NADEFFFLGS--SVEEVA 293 Query: 280 FNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 NLF ++ D +G + + GLG+A+ NRL +A+ + Sbjct: 294 KNLFKALRYMDKAGVDVVIAEGVEERGLGLAVMNRLRKASGYK 336 >gi|51891213|ref|YP_073904.1| putative translation factor [Symbiobacterium thermophilum IAM 14863] gi|51854902|dbj|BAD39060.1| putative translation factor [Symbiobacterium thermophilum IAM 14863] Length = 349 Score = 353 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 113/335 (33%), Positives = 166/335 (49%), Gaps = 24/335 (7%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 + + +A L AG +A PTETVYGL ++ + A+ R++ K RP+ NPLI H++D Sbjct: 15 EPEVVAQAAAILRAGDVVAFPTETVYGLGANALSSEAVARIFAAKGRPSDNPLIVHIADT 74 Query: 68 SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + ++ V P + L + WPGPLTLV+ + P TA L T R+P Sbjct: 75 AQLEGLVESVPPTAERLMERCWPGPLTLVMRKGPA--VPPEVTAGLDTVGIRMPDHPVAL 132 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LI G P+A PSAN SG+ S T +H+L + IP ++DGG + +G+EST++++ Sbjct: 133 ALIRAAGVPIAAPSANASGRPSPTTAEHVL-EDLAGSIPAVLDGGETGVGVESTVLDMTT 191 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDET---STPQSPGMLKSHYAPRSQVRLRAIH 242 + + ILRPGGL E L+ AI + E P+SPGM HYAP++ + L Sbjct: 192 DPPM-ILRPGGLPREELEAAIGPVVLAPGVEGGTVERPRSPGMKYRHYAPQAPLILVEGP 250 Query: 243 VNPREALIR---------------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMK 287 V + IR + + + A + L G L A +LF ++ Sbjct: 251 VLEMQEKIRDLAMEYAEEGKRVGILCSAESRGVYVAPVILEYGARGDLAGIASDLFGTLR 310 Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 D I +P GLG+AI NRL RAA R Sbjct: 311 AFDRHQVDVILAEGVPEEGLGLAIMNRLRRAAGGR 345 >gi|327441446|dbj|BAK17811.1| putative translation factor [Solibacillus silvestris StLB046] Length = 343 Score = 353 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 113/335 (33%), Positives = 183/335 (54%), Gaps = 17/335 (5%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + +S +A + L+ G +A PTETVYGL + N A+++++ K RP+ NPLI H+ Sbjct: 12 VDNSENYTQAVDLLNNGEIVAFPTETVYGLGAVATNEQAVKKIFAAKGRPSDNPLIVHIG 71 Query: 66 DISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 + V + ++ ++ + + FWPGPLTLV+D+ + P TA L T R+P Sbjct: 72 TVEEVSLYTTNISEVAQNCMEAFWPGPLTLVMDVKPNV-LAPSVTAGLDTVGIRMPDHPV 130 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 +L++T PLA PSANRSG+ S T +H+ + IP I+DGG++ IGLEST+++V Sbjct: 131 ALELLQTLKKPLAAPSANRSGKPSPTKAEHVF-EDLQNIIPCILDGGVTGIGLESTVLDV 189 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDE---TSTPQSPGMLKSHYAPRSQVRLRA 240 + V ILRPGG+ E L+ I +E +++ STP++PGM +HYAP + V L Sbjct: 190 TLDTPV-ILRPGGVTKEMLEAVIGPVVEPSLEQQKIDSTPKAPGMKYTHYAPDAPVYLIE 248 Query: 241 IHVNPREALI-------RFGNVPIKNIE--NAIISLNLSKTGKLKEAAFNLFNYMKIADD 291 + E I + + +N E A + L++ + +L++ ++ D Sbjct: 249 ANKKAIETAIAELKPVHKVALLAPQNFEEIEADYYFSFGSAHDLEQMSASLYDALRSCDK 308 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326 + A+ I ++ G+G AI NRLE+AA + S Sbjct: 309 TDATIILATATSKTGVGTAIMNRLEKAAGGKWYSL 343 >gi|118444234|ref|YP_879011.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium novyi NT] gi|118134690|gb|ABK61734.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium novyi NT] Length = 350 Score = 353 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 102/334 (30%), Positives = 166/334 (49%), Gaps = 25/334 (7%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D +++ E + +G +A PTETVYGL ++ + A+++++ K RP NPLI H++D Sbjct: 14 DEKVMKETGEIIRSGGLVAFPTETVYGLGANALDSEAVKKIFIAKGRPQDNPLIVHIADF 73 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKK 126 +M + ++ + FWPGPLTL++ + I +++A L + R+P ++ Sbjct: 74 NMDDLVKDIPAIAKKIMDKFWPGPLTLIM--KKSDKIPDVTSAGLDSIGIRMPSSIVARE 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LI+ G P+A PSAN SG+ S TN++ + + ++ II G +GLESTIV+ E Sbjct: 132 LIKKAGVPIAAPSANISGKPSPTNIERCI-EDLDGKVEAIIGGEKCDVGLESTIVDCTVE 190 Query: 187 KKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241 ILRPGG+ +E L+ I + D+ P++PGM HYAP++ V++ A Sbjct: 191 -PPCILRPGGITLEMLREIEPNIYIDPAIMKKADKNLKPKAPGMKYRHYAPKAPVKIVAG 249 Query: 242 HVNPREALIR------------FGNVPIKNIEN---AIISLNLSKTGKLKEAAFNLFNYM 286 ++ A I G + ++ I +L L A NLF + Sbjct: 250 NLEKSIAKINEMVQNYIDDGKVVGIMSTDEHKDNYSNAIVKSLGSRKDLNSVAHNLFKTL 309 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 D I + +GIAI NRL++AA Sbjct: 310 SEFDSEKVDIIISEAFEEEEIGIAIMNRLKKAAG 343 >gi|154687810|ref|YP_001422971.1| YwlC [Bacillus amyloliquefaciens FZB42] gi|154353661|gb|ABS75740.1| YwlC [Bacillus amyloliquefaciens FZB42] Length = 346 Score = 353 bits (906), Expect = 2e-95, Method: Composition-based stats. Identities = 113/333 (33%), Positives = 174/333 (52%), Gaps = 19/333 (5%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 +S TD + +A E L +A PTETVYGL ++ N A+ ++YE K RP+ NPLI H Sbjct: 14 LSTTDP-QITQAAELLRQNEVVAFPTETVYGLGANAENTEAVTKIYEAKGRPSDNPLIVH 72 Query: 64 VSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 +S IS + + S + + L KLFWPG LTLVL + P TA L+T R+P Sbjct: 73 ISHISQLDRFISHIPETAKKLMKLFWPGALTLVLPCKPGV-LSPRVTAGLETVAVRMPDH 131 Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 LI + G P+A PSAN SG+ S T +H+ + + I I+DGG + IG+EST++ Sbjct: 132 PVALALISSAGLPIAAPSANLSGKPSPTKAEHV-AHDLNGRIAGIVDGGATGIGVESTVL 190 Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQV--- 236 + ++ V +LRPGG+ E ++ A L + +E P SPGM +HYAP + + Sbjct: 191 SCTGKQPV-LLRPGGVTKEQIESAAGPILVDKGLTEEDEVPISPGMKYTHYAPSAPMAIA 249 Query: 237 -----RLRAIHVNPREALIRFGNVPIKN---IENAIISLNLSKTGKLKEAAFNLFNYMKI 288 R++ + + R G + + A + + L+ A L++ ++ Sbjct: 250 VGGARRIQELADAYKSRGKRIGILTTEENADSYQADYTKVCGRRADLETVASALYDALRS 309 Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 D++ I S P+ G+G+AI NRL +AA Sbjct: 310 FDEAEVDMIISESFPDTGVGLAIMNRLMKAAGG 342 >gi|110633072|ref|YP_673280.1| translation factor SUA5 [Mesorhizobium sp. BNC1] gi|110284056|gb|ABG62115.1| translation factor SUA5 [Chelativorans sp. BNC1] Length = 318 Score = 353 bits (906), Expect = 3e-95, Method: Composition-based stats. Identities = 152/314 (48%), Positives = 203/314 (64%), Gaps = 5/314 (1%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 AL AC L AG P+AIPTETVYGLA D+RN A+ R++E K RP NPLI H++D+ M Sbjct: 10 ALDAACRLLAAGEPVAIPTETVYGLAADARNGEAVARIFEAKGRPRFNPLIAHMADLEMA 69 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130 + A PL+L LA+ FWPGPLTLVL IHPL TA L T R P GF +I Sbjct: 70 GRFAVFSPLALRLAQAFWPGPLTLVLPHRPDLGIHPLVTAGLDTLALRCPQGFAANVIAR 129 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 +G PLA PSAN SG+++ T + + ++++ I L++DGG +++GLESTIV V ++ + Sbjct: 130 FGRPLAAPSANISGRVTGTTAEAV-NAALGDRIRLVVDGGPARVGLESTIVKV-ADETLI 187 Query: 191 ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALI 250 +LRPGGL E ++R + L+ + Q+PGML SHYAP + +RL A V EAL+ Sbjct: 188 LLRPGGLAAEEIERVAGMSLKRGANG---VQAPGMLASHYAPHAAIRLDASEVLAGEALL 244 Query: 251 RFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIA 310 FG K + A + LNLS +G L+EAA NLF+++ D GA +IA +P HGLG A Sbjct: 245 GFGPDRAKGADQAAMVLNLSPSGDLREAAANLFSHLATLDAGGAKTIAVEPVPRHGLGEA 304 Query: 311 INNRLERAAAPRNQ 324 IN+RL RAAAPR+Q Sbjct: 305 INDRLARAAAPRDQ 318 >gi|289577391|ref|YP_003476018.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter italicus Ab9] gi|289527104|gb|ADD01456.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter italicus Ab9] Length = 354 Score = 352 bits (905), Expect = 3e-95, Method: Composition-based stats. Identities = 98/338 (28%), Positives = 164/338 (48%), Gaps = 26/338 (7%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + A + + G +A PTETVYG+ +S + A+++++ +K RP NPLI H++++ Sbjct: 15 ELIDFAAKVIREGGLVAFPTETVYGIGANSFDEEAVKKIFMVKGRPQDNPLIVHIAELEQ 74 Query: 70 VKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + P L + FWPGPLTL+ + + ++TA + T R+P L Sbjct: 75 IYDLVEEIPQKAKILMEKFWPGPLTLIF--KKSQKVPYVNTAGMDTVAIRMPSDTIAHLL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I+ P++ PSAN SG+ S T+ H++ + ++ +IIDGG G+EST++++ EK Sbjct: 133 IKRAKVPISAPSANVSGKPSPTDASHVV-EDLDGKVDIIIDGGKCDFGVESTVLDLT-EK 190 Query: 188 KVRILRPGGLEIETLKRAIS-VELEYCV----DETSTPQSPGMLKSHYAPRSQVRLRAIH 242 +LRPG + +E LK I VE++ + P+SPGM HY+P ++V + H Sbjct: 191 MPVVLRPGAVTLEMLKEVIGNVEVDPSLLKKPKGNLKPKSPGMKYKHYSPNAEVYIVKGH 250 Query: 243 VNPREALIR---------------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMK 287 + I+ V + + + + A NLF ++ Sbjct: 251 LKKVVKKIQELTEEQLKYGKKVGIMATVQTSTQYKKGEIIVVGDRNRPETIAKNLFAVLR 310 Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325 D G I S + +G+AI NRLE+AA + S Sbjct: 311 QFDKKGVDVIFAESFEYNNIGLAIMNRLEKAAGYKEIS 348 >gi|297543678|ref|YP_003675980.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841453|gb|ADH59969.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 354 Score = 352 bits (905), Expect = 4e-95, Method: Composition-based stats. Identities = 97/338 (28%), Positives = 163/338 (48%), Gaps = 26/338 (7%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + A + + G +A PTETVYG+ +S + A+++++ +K RP NPLI H++++ Sbjct: 15 ELIDLAAKVIREGGLVAFPTETVYGIGANSFDEEAVKKIFMVKGRPQDNPLIVHIAELEQ 74 Query: 70 VKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + P L + FWPGPLTL+ + + ++TA + T R+P L Sbjct: 75 IYDLVEDIPQKAKILMEKFWPGPLTLIF--KKSQKVPYVNTAGMDTVAIRMPSDTIAHLL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I+ P++ PSAN SG+ S T+ H++ + ++ +IIDGG G+EST++++ EK Sbjct: 133 IKRAKVPISAPSANVSGKPSPTDASHVV-EDLDGKVDIIIDGGKCDFGVESTVLDLT-EK 190 Query: 188 KVRILRPGGLEIETLKRAIS-VELEYCV----DETSTPQSPGMLKSHYAPRSQVRLRAIH 242 +LRPG + +E LK I VE++ + P+SPGM HY+P ++V + Sbjct: 191 MPVVLRPGAVTLEMLKEVIGNVEVDPSLLKKPKGNLKPKSPGMKYKHYSPNAEVYIVKGD 250 Query: 243 VNPREALIR---------------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMK 287 + I+ V + + + + A NLF ++ Sbjct: 251 LEKVVKKIQELTEEQLKYGKKVGIMATVQTSTQYKKGEIIVVGDRKRPETIAKNLFAVLR 310 Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325 D G I S + +G+AI NRLE+AA + S Sbjct: 311 QFDKKGVDVIFAESFEYNNIGLAIMNRLEKAAGYKEIS 348 >gi|254520295|ref|ZP_05132351.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium sp. 7_2_43FAA] gi|226914044|gb|EEH99245.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium sp. 7_2_43FAA] Length = 349 Score = 352 bits (904), Expect = 4e-95, Method: Composition-based stats. Identities = 109/336 (32%), Positives = 168/336 (50%), Gaps = 29/336 (8%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L++A + + G +A PTETVYGL ++ N A+ +++ K RP NPLI HVS Sbjct: 14 DIEYLKEAADIIYNGGVVAFPTETVYGLGANALNDEAVEKIFNAKGRPQDNPLIVHVSSK 73 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 ++ V ++ L FWPGPLT++L+ I ++ANL T R+P K Sbjct: 74 NINNLVKDVPEIAQKLINRFWPGPLTIILNKKEI--IPNRTSANLDTIGIRMPNDKIALK 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LIE G P+A PSAN SG+ S T V+ + + I I+ G S +G+ESTIV+ + Sbjct: 132 LIELSGCPIAAPSANISGRPSPTEVERCV-EDLSGRIDYILGGERSNVGVESTIVDCTVD 190 Query: 187 KKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241 + +LRPGG+ +E L+ I ++ D+ P++PGM HYAP++ +L+ I Sbjct: 191 PPM-VLRPGGVTLEMLQEVCEDIKIDKAIQGKPDKNLKPKAPGMKYRHYAPKA--KLKII 247 Query: 242 HVNPREALIRFGNVPIKNIENA-----------------IISLNLSKTGKLKEAAFNLFN 284 N ++ + + + IEN ++L L + A NLF Sbjct: 248 KGNKQKTIEKINEIVQNYIENQKEVAILSTDELCSYFNKGKVISLGSEKNLYDVARNLFE 307 Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ DD I + G+G+AI NRL +AA Sbjct: 308 SLRECDDLNVDIILCQAFDEKGVGLAIMNRLNKAAG 343 >gi|212224235|ref|YP_002307471.1| Hypothetical translation factor [Thermococcus onnurineus NA1] gi|212009192|gb|ACJ16574.1| Hypothetical translation factor [Thermococcus onnurineus NA1] Length = 339 Score = 352 bits (904), Expect = 4e-95, Method: Composition-based stats. Identities = 118/331 (35%), Positives = 173/331 (52%), Gaps = 23/331 (6%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D ++ A +F+ G +A PTETVYGL D+ N A RR++E K RPA NPLI H++D Sbjct: 12 DGRKIKIAAKFILEGKLVAFPTETVYGLGADALNEEAARRIFEAKGRPADNPLIVHIADF 71 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126 +KK A + + LA+ FWPGPLT+VL ++ ++T L T R+P Sbjct: 72 DDLKKLAREIPDEARLLAEKFWPGPLTVVLP--KKEEVPTVTTGGLDTVAVRMPAHPIAL 129 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 + P+A PSAN SG+ S T +H++ K I IIDGG +KIG+EST+V++ E Sbjct: 130 ALIRASTPIAAPSANISGKPSPTLAEHVIDDFYGK-IECIIDGGETKIGVESTVVDLSGE 188 Query: 187 KKVRILRPGGLEIETLKRAIS-VELEYCVDET--STPQSPGMLKSHYAPRSQV------- 236 K +LRPGGL +E +++ I VE+ V +SPGM HY+P +QV Sbjct: 189 KP-TLLRPGGLPLEEIEKVIGEVEIHPAVRGKLVDVARSPGMKYKHYSPNAQVIVVEGPR 247 Query: 237 -----RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291 ++ + R+ +R G + + +A +L + +E A NLF ++ D Sbjct: 248 ENVRKKIEELVKEYRKKGLRVGVMATEQY-DADEFFHLGTSE--EEVARNLFKALRELDK 304 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 I I GLG A+ NRL +AA R Sbjct: 305 RRVDIIIAEGIEERGLGFAVMNRLRKAAGYR 335 >gi|328555401|gb|AEB25893.1| ribosome maturation factor; RNA binding protein [Bacillus amyloliquefaciens TA208] gi|328913773|gb|AEB65369.1| putative ribosome maturation factor; RNA binding protein [Bacillus amyloliquefaciens LL3] Length = 346 Score = 352 bits (904), Expect = 4e-95, Method: Composition-based stats. Identities = 113/333 (33%), Positives = 173/333 (51%), Gaps = 19/333 (5%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 +S TD + +A E L +A PTETVYGL ++ N A+ ++YE K RP+ NPLI H Sbjct: 14 LSTTDP-QITQAAELLRQNEVVAFPTETVYGLGANAENTEAVTKIYEAKGRPSDNPLIVH 72 Query: 64 VSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 +SDI + + S V + L KLFWPG LTLVL + P TA L+T R+P Sbjct: 73 ISDIGQLDRFISHVPETAKKLMKLFWPGALTLVLPCKPGV-LSPRVTAGLETVAVRMPDH 131 Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 LI + G P+A PSAN SG+ S T +H+ + + I I+DGG + IG+EST++ Sbjct: 132 PVALALISSAGLPIAAPSANLSGKPSPTKAEHV-AHDLNGRIAGIVDGGATGIGVESTVL 190 Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQV--- 236 + ++ V +LRPGG+ E ++ A L + +E P SPGM +HYAP + + Sbjct: 191 SCAGKQPV-LLRPGGVTKEQIESAAGPVLVDKGLTEEDEVPISPGMKYTHYAPSAPLAVA 249 Query: 237 -----RLRAIHVNPREALIRFGNVPIKN---IENAIISLNLSKTGKLKEAAFNLFNYMKI 288 R++ + + R G + + A + L+ A L++ ++ Sbjct: 250 DGGARRIQELADEYKRRGKRIGILTTEENADSYQADFIKVCGRRADLETVASALYDALRS 309 Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 D++ I S P+ G+G+A+ NRL +AA Sbjct: 310 FDEAEVDMIISESFPDTGVGLAVMNRLMKAAGG 342 >gi|308175423|ref|YP_003922128.1| ribosome maturation factor [Bacillus amyloliquefaciens DSM 7] gi|307608287|emb|CBI44658.1| putative ribosome maturation factor; RNA binding protein [Bacillus amyloliquefaciens DSM 7] Length = 346 Score = 352 bits (904), Expect = 4e-95, Method: Composition-based stats. Identities = 112/333 (33%), Positives = 173/333 (51%), Gaps = 19/333 (5%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 +S TD + +A E L +A PTETVYGL ++ N A+ ++YE K RP+ NPLI H Sbjct: 14 LSTTDP-QITQAAELLRQNEVVAFPTETVYGLGANAENTEAVTKIYEAKGRPSDNPLIVH 72 Query: 64 VSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 +SDI + + S + + L KLFWPG LTLVL + P TA L+T R+P Sbjct: 73 ISDIGQLDRFISHIPETAKKLMKLFWPGALTLVLPCKPGV-LSPRVTAGLETVAVRMPDH 131 Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 LI + G P+A PSAN SG+ S T +H+ + + I I+DGG + IG+EST++ Sbjct: 132 PVALALISSAGLPIAAPSANLSGKPSPTKAEHV-AHDLNGRIAGIVDGGATGIGVESTVL 190 Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQV--- 236 + ++ V +LRPGG+ E ++ A L + +E P SPGM +HYAP + + Sbjct: 191 SCAGKQPV-LLRPGGVTKEQIESAAGPVLVDKGLTEEDEVPISPGMKYTHYAPSAPLAVA 249 Query: 237 -----RLRAIHVNPREALIRFGNVPIK---NIENAIISLNLSKTGKLKEAAFNLFNYMKI 288 R++ + + R G + + A + L+ A L++ ++ Sbjct: 250 DGGARRIQELADEYKSRGKRIGILTTEENAESYQADFIKVCGRRADLETVASALYDALRS 309 Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 D++ I S P+ G+G+A+ NRL +AA Sbjct: 310 FDEAEVDMIISESFPDTGVGLAVMNRLMKAAGG 342 >gi|332158705|ref|YP_004423984.1| sua5 superfamily-related protein [Pyrococcus sp. NA2] gi|331034168|gb|AEC51980.1| sua5 superfamily-related protein [Pyrococcus sp. NA2] Length = 340 Score = 352 bits (904), Expect = 4e-95, Method: Composition-based stats. Identities = 118/343 (34%), Positives = 180/343 (52%), Gaps = 28/343 (8%) Query: 1 MQIM----SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56 M I+ D LR A + G +A PTETVYGL D+ N +A+RR++E K RPA Sbjct: 1 MTIIINMRDGIDERKLRIAARLIREGKLVAFPTETVYGLGADALNESAVRRIFEAKGRPA 60 Query: 57 MNPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115 NPLI H+S S V + A V + LA+ FWPGPL +VL + + ++T L T Sbjct: 61 DNPLIVHISSFSQVHELAREVPEEAKMLAREFWPGPLAIVLP--KSEIVPKVTTGGLDTV 118 Query: 116 CFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174 R+P KLIE G P+A PSAN SG+ S T+ +H+ + +I I+DGG +KI Sbjct: 119 AIRMPANKIALKLIELSGRPIAAPSANISGKPSPTSAEHV-AEDFYGKIECIVDGGETKI 177 Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCV--DETSTPQSPGMLKSHYA 231 G+EST++++ V +LRPGGL +E ++R I V + V + ++PGM HYA Sbjct: 178 GVESTVIDLTEWPPV-LLRPGGLPLEEIERVIGEVRVHPAVYGKKVDVAKAPGMKYRHYA 236 Query: 232 PRSQV------------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAA 279 P ++V ++R + + ++ G + + A L + ++E A Sbjct: 237 PNAEVIVVEGSREKVGAKIRELVEEFKSKGLKVGVIGSADY-GADEFFFLGR--SVEEVA 293 Query: 280 FNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 NLF ++ D +G + + GLG+A+ NRL +A+ R Sbjct: 294 RNLFKALRYMDRAGVDIVIAEGVEEKGLGLAVMNRLRKASGYR 336 >gi|163867863|ref|YP_001609067.1| hypothetical protein Btr_0635 [Bartonella tribocorum CIP 105476] gi|161017514|emb|CAK01072.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476] Length = 320 Score = 352 bits (904), Expect = 5e-95, Method: Composition-based stats. Identities = 143/322 (44%), Positives = 208/322 (64%), Gaps = 3/322 (0%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 + +S ++++A L+ G +A+PTETVYGLA D+ N A+ ++ KKRP NPLI Sbjct: 2 TIRPLNSVSIKEAITLLEQGRLVALPTETVYGLAGDATNGRALSSIFSTKKRPQFNPLIA 61 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 HV+ I M +++ +D LS L ++FWPGPLTLVL L +IHPL+TA L T R P Sbjct: 62 HVNGIEMAERYVEIDFLSRRLMEVFWPGPLTLVLPLKKQHNIHPLTTAGLDTLAIRFPDS 121 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 ++++ G PLA PSAN+SG++S T+ + + +S + + +PLI+DGG +KIGLESTI+ Sbjct: 122 RFAEIVQCLGRPLAAPSANQSGRLSPTSAEAVFTS-LGESVPLILDGGPAKIGLESTIIK 180 Query: 183 VQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242 + C +++ +LRPGGL + ++ + L+ +D+ + ++PGMLK+HYAP + +RL Sbjct: 181 I-CGERIYLLRPGGLAADKIEEVVGRSLKR-IDQRAAIEAPGMLKTHYAPNAAIRLNVEK 238 Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302 V EAL+ FG + ENA LNLS+ G L+EAA +LF YMK D IA I Sbjct: 239 VENGEALLAFGPKRVMGAENAAFILNLSEGGTLEEAASHLFQYMKELDSFKVRCIAVEPI 298 Query: 303 PNHGLGIAINNRLERAAAPRNQ 324 P+ GLG AIN+RL RAAAPR + Sbjct: 299 PSWGLGEAINDRLIRAAAPREK 320 >gi|291548626|emb|CBL24888.1| Sua5/YciO/YrdC/YwlC family protein [Ruminococcus torques L2-14] Length = 508 Score = 352 bits (903), Expect = 5e-95, Method: Composition-based stats. Identities = 104/336 (30%), Positives = 161/336 (47%), Gaps = 25/336 (7%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 + + + +A L G +A PTETVYGL D+ A ++ Y K RP+ NPLI H++D Sbjct: 13 INQDVIEEAGNVLKQGGLVAFPTETVYGLGADALKEEAAKKTYAAKGRPSDNPLIVHIAD 72 Query: 67 ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFT 124 +KK A ++ P + LA FWPGPLT++ + + + +T L T R+P Sbjct: 73 YEDLKKVAVNIPPETDALAAHFWPGPLTMIFE--KSESVPYGTTGGLDTVAVRMPSDPIA 130 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 LI G ++ PSAN SG+ S T +H+ + +I +I+DGG IGLESTI+++ Sbjct: 131 AALIRAAGGFVSAPSANTSGRPSPTTAEHV-RVDLEGKIDMILDGGAVDIGLESTILDMT 189 Query: 185 CEKKVRILRPGGLEIETLKRAISV----ELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 E + ILRPG + + + I E + P++PGM HYAP++++ + Sbjct: 190 VEPPM-ILRPGAITADMFEEVIGPVGVDETLVNSESKQAPKAPGMKYRHYAPKAKMMIVE 248 Query: 241 IHVNPREALIR------------FGNVPIKN---IENAIISLNLSKTGKLKEAAFNLFNY 285 ++ IR G + N I N+ A NL+ Sbjct: 249 GNIREEILAIRQLAYAAHREGKEVGIIATGETVQFYNYGIVKNIGTRENENTIARNLYRV 308 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 ++ D+ I S +G+G AI NRLE+AA Sbjct: 309 LREFDEEDVDLIYSESFAMNGIGKAIMNRLEKAAGH 344 >gi|218682976|ref|ZP_03530577.1| probable translation factor protein [Rhizobium etli CIAT 894] Length = 334 Score = 352 bits (903), Expect = 6e-95, Method: Composition-based stats. Identities = 164/303 (54%), Positives = 205/303 (67%), Gaps = 2/303 (0%) Query: 21 AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80 G IAIPTETVYGLA D+ NP AI R+YE K RP NPLICH++D++M ++HA DP+S Sbjct: 34 DGFAIAIPTETVYGLAADATNPAAITRIYETKGRPRFNPLICHMADLAMAEEHAEFDPVS 93 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSA 140 LA FWPGPLTLVL L + IH L+TA L + RVP GF LI +G PLA PSA Sbjct: 94 RALAAAFWPGPLTLVLPLKPESPIHSLATAGLDSVGIRVPKGFAGALIGAFGRPLAAPSA 153 Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200 N SG IS T+ H+ + + ++PLI+D G S +G+ESTIV V+ + ++R+LRPGGL Sbjct: 154 NTSGAISATSAAHV-EADLGAKVPLILDAGPSAVGVESTIVKVEGD-RLRLLRPGGLAAR 211 Query: 201 TLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNI 260 ++R L ++ ++PGML SHYAP + VRL A V P EALI FG+ + Sbjct: 212 EIERVAGRPLLRAKTASAAIEAPGMLASHYAPGAAVRLNARTVEPGEALIGFGSAAVSGA 271 Query: 261 ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 E A I L+LS G L EAA NLF+YMK AD SGASSIAFS IP GLG AIN+RL+RAAA Sbjct: 272 EAARIVLDLSPRGDLAEAAANLFDYMKRADASGASSIAFSPIPEEGLGEAINDRLQRAAA 331 Query: 321 PRN 323 PR+ Sbjct: 332 PRD 334 >gi|260460343|ref|ZP_05808595.1| Sua5/YciO/YrdC/YwlC family protein [Mesorhizobium opportunistum WSM2075] gi|259033988|gb|EEW35247.1| Sua5/YciO/YrdC/YwlC family protein [Mesorhizobium opportunistum WSM2075] Length = 324 Score = 352 bits (903), Expect = 6e-95, Method: Composition-based stats. Identities = 155/317 (48%), Positives = 198/317 (62%), Gaps = 4/317 (1%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 AL +A L G +AIPTETVYGLA D+ N + R++E K RP NPLI HV+D++M Sbjct: 9 EALERALALLQGGDVVAIPTETVYGLAGDATNGIGVARIFEAKGRPRFNPLIAHVADMAM 68 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129 ++ A DPLS LA FWPGPLTLVL IHPL TA L T R+P GF LI Sbjct: 69 AERIALFDPLSKKLAIAFWPGPLTLVLPQRPGNGIHPLVTAGLDTIALRMPRGFGGDLIA 128 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PLA PSAN SG+IS T + + ++ + I L++DGG + +GLESTIV + ++ Sbjct: 129 RLGRPLAAPSANSSGKISATTAQAV-AADLGARIRLVVDGGATPVGLESTIVKAE-AGRL 186 Query: 190 RILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREAL 249 R+LRPGG+ E ++ A+ +EL + ++PGML SHYAP + VRL A V EAL Sbjct: 187 RLLRPGGIAAEDIEAAVGMEL--LRGGGAGVEAPGMLASHYAPGAAVRLNAGTVGDGEAL 244 Query: 250 IRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGI 309 + FGN + A NLS TG L+EAA NLF YM+ D SGA +IA IP GLG Sbjct: 245 LAFGNRRAAGWQRAAAFRNLSDTGDLREAATNLFAYMQDLDRSGARTIAVEPIPFDGLGE 304 Query: 310 AINNRLERAAAPRNQSQ 326 AIN+RL RAAAPR+ +Q Sbjct: 305 AINDRLSRAAAPRDNTQ 321 >gi|254452824|ref|ZP_05066261.1| Sua5/YciO/YrdC/YwlC protein family:SUA5 domain [Octadecabacter antarcticus 238] gi|198267230|gb|EDY91500.1| Sua5/YciO/YrdC/YwlC protein family:SUA5 domain [Octadecabacter antarcticus 238] Length = 315 Score = 351 bits (902), Expect = 8e-95, Method: Composition-based stats. Identities = 147/318 (46%), Positives = 181/318 (56%), Gaps = 13/318 (4%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 TD L A L G +A PTETVYGL VD+RN A+ RLY+ K RP+ NPLI HV Sbjct: 10 ATDQAELDAAARVLAGGGLVAFPTETVYGLGVDARNSDAVARLYQAKGRPSFNPLIVHVG 69 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 I K+ D +L LA+ FWPG LTLVL L + I PL TA L+T RVP Sbjct: 70 SIEAAKQFVEFDHTALVLAQAFWPGALTLVLPLRRDSAISPLVTAGLETLAIRVPDHSVA 129 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 L+ +G P+A PSAN SGQ+S T H+ + I I+DGG +GLESTIV Sbjct: 130 NGLLAAFGGPVAAPSANPSGQVSPTKFAHV-RDLMTGRIDGIVDGGDCGVGLESTIV--A 186 Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244 + +LR GGL +E ++ A+ +L D TS P SPG L SHYAP VRL A V Sbjct: 187 TKPTPTLLRAGGLPVEAIEAALGYDLALAGD-TSAPSSPGQLASHYAPAGTVRLNAQTVE 245 Query: 245 PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPN 304 E L+ FG V +LNLS +G L AA LF+ + + GA+ IA S IP+ Sbjct: 246 AGETLLGFGPV--------DAALNLSPSGDLIHAAARLFDALHQLNAMGAARIAVSPIPD 297 Query: 305 HGLGIAINNRLERAAAPR 322 HGLG AIN+RL RAAAPR Sbjct: 298 HGLGRAINDRLRRAAAPR 315 >gi|304317927|ref|YP_003853072.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302779429|gb|ADL69988.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 349 Score = 351 bits (902), Expect = 8e-95, Method: Composition-based stats. Identities = 106/339 (31%), Positives = 177/339 (52%), Gaps = 26/339 (7%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + +A L +G +A PTETVYG+ +S NP A+ +++ K RP NPLI H+++ Sbjct: 13 DIGLIDEAANILISGGLVAFPTETVYGIGANSLNPDAVAKIFIAKGRPQDNPLILHIAEF 72 Query: 68 SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + K+A V +L + +LFWPGPLT++ + + + P++TA + T R+P Sbjct: 73 QDLFKYAKNVPDNALKMMELFWPGPLTMIFE--KSDIVPPINTAGMDTVAIRMPSNTIAH 130 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LI+ G P++ PSAN SG+ S T+ H+++ + + +IIDGG +G+EST+V++ Sbjct: 131 TLIKRAGIPVSAPSANLSGKPSPTDASHVIND-LYGSVDMIIDGGSCDVGVESTVVDMTG 189 Query: 186 EKKVRILRPGGLEIETLKRAIS-VELEYCVDETST----PQSPGMLKSHYAPRSQVRLRA 240 E + ILRPGG+ E + AI VE++ V + P++PGM HY+P ++V + Sbjct: 190 EIPI-ILRPGGITKEMIMNAIGSVEVDPIVYKKPAKDLRPKAPGMKYKHYSPDAEVFIVK 248 Query: 241 IHVNPREALI------------RFGNVPIKNI---ENAIISLNLSKTGKLKEAAFNLFNY 285 ++ I + G + + + L + + + A NLFN Sbjct: 249 GNLGDVIKKIQELTEFQLNNGKKVGIMATEQTCEKYRNGVVLVVGDRERPETIAKNLFNC 308 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQ 324 ++ D G + G+G+AI NRLE+AA + Sbjct: 309 LREFDKKGVDIVYAEGFDYSGIGLAIMNRLEKAAGYKEI 347 >gi|205375324|ref|ZP_03228114.1| SUA5 protein [Bacillus coahuilensis m4-4] Length = 339 Score = 351 bits (902), Expect = 8e-95, Method: Composition-based stats. Identities = 103/326 (31%), Positives = 164/326 (50%), Gaps = 18/326 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 +R+A E L +A PTETVYGL ++ + A+R++YE K RP+ NPLI H+ D + Sbjct: 14 QIRQAAELLQRNEVVAFPTETVYGLGANATSSEAVRKIYEAKGRPSDNPLIVHIDDKRQL 73 Query: 71 KKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 A + + L FWPGPLT++ + TA L T RVP + ++ Sbjct: 74 GDLVAEIPASAYLLMDEFWPGPLTIIFAKKPGV-FSDIVTAGLDTVAIRVPDHPVARAIL 132 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 P+A PSANRSG+ S T H+ ++ + I I+DGG + +G+EST+++ Sbjct: 133 HETNLPIAAPSANRSGRPSPTTAHHV-ATDLTGRIAGIVDGGPTGVGVESTVIDCTVTPP 191 Query: 189 VRILRPGGLEIETLKRAIS-VELEYCVDETS-TPQSPGMLKSHYAPRSQVRLRAIHVNPR 246 + ILRPGG+ E ++ I V ++ + E P+SPGM +HYAP + V L +V Sbjct: 192 M-ILRPGGVTAEQIREVIGDVSIDPSLKEGEGAPKSPGMKYTHYAPEAPVYLVEGNVQRL 250 Query: 247 EALI--------RFGNVPIKNIEN---AIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 + LI + G + + + A + + L A +L+ ++ +++ Sbjct: 251 QQLIDRKQAEGMKVGVMSTREAASDLKADVVVTCGSRENLSTVARDLYEALRHFNETDVD 310 Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321 I + G+G AI NRLE+AA Sbjct: 311 IILSETFSKEGIGSAIMNRLEKAAGY 336 >gi|301299954|ref|ZP_07206181.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852436|gb|EFK80093.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus salivarius ACS-116-V-Col5a] Length = 336 Score = 351 bits (902), Expect = 8e-95, Method: Composition-based stats. Identities = 116/338 (34%), Positives = 173/338 (51%), Gaps = 24/338 (7%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I I + +A + L G +A PTETVYGL D+ N A++R+Y K RP+ NPL Sbjct: 1 MLITKIYKPSEFNEAAKELSLGELVAFPTETVYGLGADATNEQAVKRVYLAKGRPSDNPL 60 Query: 61 ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I VS + MVK+ S+ + + FWPG LT+VL + + + T LKTA FR+ Sbjct: 61 IVTVSSLEMVKRFVPSLSKDVEKIIEKFWPGSLTIVLKIKDGS-LSKTVTGGLKTAAFRM 119 Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T LI G+P+ PSAN SG+ S T +H+ + I I+D G + +G+ES Sbjct: 120 PKNETTLNLITALGNPIVGPSANSSGKPSPTTAQHVY-HDLEGRIAGILDDGPTDVGVES 178 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQ 235 TI+++ E ILRPG + E +++ I E+ ++ V E P++PGM HYAP +Q Sbjct: 179 TIIDMSTEIP-TILRPGAVTAEEIEKVIGKEVYSDKHKVKENEIPKAPGMKYKHYAPSAQ 237 Query: 236 VRLR-----------AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFN 284 V + A + ++ V K +EN SL ++ AA NLF Sbjct: 238 VLIVNKDNWNSALQWANENKNQVGILADDEVLSKALENKTYSLG----ENVESAAKNLFA 293 Query: 285 YMKIADDSG-ASSIAFSSIPNHGLGIAINNRLERAAAP 321 ++ DD I + P G+G+A NRL+++A Sbjct: 294 GLRYFDDDNQIKYILAEAFPEEGVGLAYMNRLKKSAGN 331 >gi|302390585|ref|YP_003826406.1| translation factor SUA5 [Thermosediminibacter oceani DSM 16646] gi|302201213|gb|ADL08783.1| translation factor SUA5 [Thermosediminibacter oceani DSM 16646] Length = 343 Score = 351 bits (902), Expect = 8e-95, Method: Composition-based stats. Identities = 103/332 (31%), Positives = 162/332 (48%), Gaps = 22/332 (6%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 + ++ A + G +A PTETVYGL ++ + A ++Y+ KKRP NPLI H+ Sbjct: 10 EPESINLAARVIKNGGLVAFPTETVYGLGANALDEKAAFKIYQAKKRPQDNPLIVHIHSP 69 Query: 68 SMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125 + K AS P + L + FWPGPLT+VL+ + + +T L T R+P Sbjct: 70 GELDKLASNVPRTARILMEKFWPGPLTIVLE--KSGAVPYGTTGGLDTVAVRMPRHPVAL 127 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LI G P+A PSAN SG+ S T + + + +I+DGG ++G+EST++++ Sbjct: 128 ALIRESGVPIAAPSANISGRPSPTTAGDVY-EDLAGRVDIILDGGPCEVGVESTVLDLTG 186 Query: 186 EKKVRILRPGGLEIETLKRAIS-VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244 E V ILRPGG+ E L+ + VEL+ + E P+SPG HY+P+++V + + Sbjct: 187 EVPV-ILRPGGVTREELEAVLGRVELDPGLAEGQKPKSPGQKYKHYSPKARVLVVEGPIE 245 Query: 245 PREALIR---------------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIA 289 + I V + L++ + NLF+ ++ Sbjct: 246 AQVRKITELAKKLTAEGKKVGIMATVQTRGYYETGCVLSVGDREAPLTISSNLFSVLRKF 305 Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 D G + IP GLG+A+ NRL +AA Sbjct: 306 DKLGVEEVLAEGIPETGLGLAVMNRLRKAAGY 337 >gi|326792742|ref|YP_004310563.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium lentocellum DSM 5427] gi|326543506|gb|ADZ85365.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium lentocellum DSM 5427] Length = 344 Score = 350 bits (900), Expect = 1e-94, Method: Composition-based stats. Identities = 109/343 (31%), Positives = 174/343 (50%), Gaps = 26/343 (7%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ ITD+ AL +A L G +A PTETVYGL ++ N A++ +Y+ K RP+ NPL Sbjct: 1 MKTSIITDTTALLEAANILQQGGLVASPTETVYGLCANALNENAVKNIYKAKGRPSDNPL 60 Query: 61 ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I H++D+ M+ V P++ L + FWPGPLTL+ +++ + + T L T R Sbjct: 61 IVHIADLEMLSPLVEEVPPMARTLMEHFWPGPLTLIF--KASSLVPKVVTGGLDTVAIRF 118 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P ++LI+ G PLA PSAN SG+ S TN ++ + +I II G SK G+ES Sbjct: 119 PSHPIIQQLIKASGLPLAAPSANTSGKPSPTNASRVI-EDLEGKIDAIIVGDSSKYGVES 177 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAIS-----VELEYCVDETSTPQSPGMLKSHYAPR 233 T+V+ + ILRPGG+ E ++ + + + + E P++PGM HY+P Sbjct: 178 TVVD-TTGEVATILRPGGITAEMIEAVLGSVTIDPAISHALKEGELPKAPGMKYIHYSPN 236 Query: 234 SQVRLRAIH------------VNPREALIRFGNVPIKNIEN---AIISLNLSKTGKLKEA 278 ++V + V+ + G + + A + ++ T L Sbjct: 237 AEVIIVDGEESLVISKMNELIVSAHSQGKKVGVLATDETKEHFKADLVISAGTTKNLTTI 296 Query: 279 AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 A +LF ++ DD+ + + P G+G AI NRLE++A Sbjct: 297 AAHLFEALRTFDDADIDIVYSLAFPKKGIGNAIMNRLEKSAGY 339 >gi|302875885|ref|YP_003844518.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium cellulovorans 743B] gi|307689318|ref|ZP_07631764.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium cellulovorans 743B] gi|302578742|gb|ADL52754.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium cellulovorans 743B] Length = 350 Score = 350 bits (900), Expect = 1e-94, Method: Composition-based stats. Identities = 104/337 (30%), Positives = 162/337 (48%), Gaps = 26/337 (7%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 + + LR+ E + G +A PTETVYGL ++ + A+ +++ K RP NPLI H+S Sbjct: 13 IEKDKLREVAEVIRNGGLVAFPTETVYGLGANAFDENAVEKIFIAKGRPQDNPLIVHISQ 72 Query: 67 ISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFT 124 + + P S L FWPGP+T +L+ T I ++A L+T R+P Sbjct: 73 LDDIFPLVKEIPSSAKMLMDNFWPGPITFILN--KETCIPYKTSAGLETIGIRMPSDPLA 130 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + LI+ G P+A PSAN SG+ S T++ + + ++ II G S++GLESTIV+ Sbjct: 131 RALIKEVGVPIAAPSANLSGKPSPTDINRCI-EDLEGKVDCIIGGSNSEVGLESTIVDCT 189 Query: 185 CEKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQV--- 236 E +LRPG + IE +++ I L D+ P++PGM HYAP++ V Sbjct: 190 VE-PPCVLRPGAITIEMIRKIQPEAYIDPALLNKADQNFKPKAPGMKYKHYAPKASVIII 248 Query: 237 ---------RLRAIHVNPREALIRFGNVPIKNIENAII---SLNLSKTGKLKEAAFNLFN 284 ++ I N + I+ G + + ++L L NLF Sbjct: 249 KGEINKTVEKINEIVQNYIDDGIKVGIMATDETKTYYKKGEVISLGSRSDLTSIGRNLFG 308 Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 ++ DD G I + G+AI NRL +AA Sbjct: 309 VLRTFDDLGVEYIISEAFEEKEYGLAIMNRLNKAAGY 345 >gi|83312811|ref|YP_423075.1| putative translation factor [Magnetospirillum magneticum AMB-1] gi|82947652|dbj|BAE52516.1| Putative translation factor [Magnetospirillum magneticum AMB-1] Length = 368 Score = 350 bits (900), Expect = 1e-94, Method: Composition-based stats. Identities = 123/311 (39%), Positives = 179/311 (57%), Gaps = 10/311 (3%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 L G +A PTETVYGL D+ + A+ +++ K RP+ NPLI HVS + + Sbjct: 67 RVLAEGGLVAFPTETVYGLGGDATSDAAVAAIFKAKGRPSFNPLIAHVSSLEQAAALVEL 126 Query: 77 DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPL 135 + LA+ FWPGPLTLVL + + + L++A L + R+P LI+ G PL Sbjct: 127 GADAHLLAERFWPGPLTLVLRRRADSPVSLLASAGLDSVAVRMPDHPVALALIKAAGRPL 186 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 A PSANRSG++S T +H+ + + I +++DGG ++G+EST++++ E+ +LRPG Sbjct: 187 AAPSANRSGRVSPTRAEHV-AQCLEGRIAMVLDGGPCRVGVESTVLDL-SEEPPTLLRPG 244 Query: 196 GLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNV 255 G+ + L+ A+ + ++ P+SPG L+SHYAP VRL A P EAL+ FG Sbjct: 245 GITADELEAALGRPIRRALETPDAPRSPGQLESHYAPALPVRLNATGAEPGEALLGFGPA 304 Query: 256 PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRL 315 P LNLS G L EAA +LF ++ D IA IP GLG+AIN+RL Sbjct: 305 P-------DCVLNLSPKGDLSEAAAHLFAMLRALDRPDYRGIAVMPIPGRGLGLAINDRL 357 Query: 316 ERAAAPRNQSQ 326 +RAAAPR+ + Sbjct: 358 KRAAAPRDTQK 368 >gi|325264267|ref|ZP_08130998.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium sp. D5] gi|324030338|gb|EGB91622.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium sp. D5] Length = 511 Score = 350 bits (900), Expect = 1e-94, Method: Composition-based stats. Identities = 102/336 (30%), Positives = 163/336 (48%), Gaps = 25/336 (7%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 D + +A E L G +A PTETVYGL ++ + A ++ Y K RP+ NPLI H++D Sbjct: 16 IDKEVILEAGEVLKNGGLVAFPTETVYGLGANALDEEAAKKTYAAKGRPSDNPLIVHIAD 75 Query: 67 ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 + + + V P + LA FWPGPLT++ + + + +T L T R+P Sbjct: 76 LQALDEITENVPPETEELAFHFWPGPLTMIFE--KSDIVPLGTTGGLGTVAVRMPSDLIA 133 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 ++LI G ++ PSAN SG+ S T +H+ + + +I +I+DGG IGLESTI+++ Sbjct: 134 RELILAAGGYVSAPSANTSGRPSPTTAQHV-AEDLDGKIDMILDGGSVDIGLESTILDMT 192 Query: 185 CEKKVRILRPGGLEIETLKRAISV----ELEYCVDETSTPQSPGMLKSHYAPRSQVR--- 237 + ILRPG + + L+ I E + T P++PGM HYAP++++ Sbjct: 193 VTPPM-ILRPGAITADMLEEVIGTVSVDETILGSESTQAPKAPGMKYRHYAPKARLMIVE 251 Query: 238 ---------LRAIHVNPREALIRFGNVPIKN---IENAIISLNLSKTGKLKEAAFNLFNY 285 +R + + G + + N+ K A NL+ Sbjct: 252 GTLREEVFAIRQLAYEAHRQGRKAGIIATNETMPFYTYGLIKNIGSRDNEKTIARNLYAV 311 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 ++ D+ + I S G+G AI NRLE+AA Sbjct: 312 LREFDEEDVAEIFSESFAAQGIGKAIMNRLEKAAGH 347 >gi|241203341|ref|YP_002974437.1| Sua5/YciO/YrdC/YwlC family protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857231|gb|ACS54898.1| Sua5/YciO/YrdC/YwlC family protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 324 Score = 350 bits (900), Expect = 1e-94, Method: Composition-based stats. Identities = 161/303 (53%), Positives = 202/303 (66%), Gaps = 2/303 (0%) Query: 21 AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80 G IAIPTETVYGLA D+ NP AI R+YE K RP NPLICH++D++M ++HA DP+S Sbjct: 24 DGFAIAIPTETVYGLAADATNPAAITRIYETKGRPRFNPLICHMADLAMAEEHAEFDPVS 83 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSA 140 LA+ FWPGPLTLVL L + IH L+ A L + RVP GF LI +G PLA PSA Sbjct: 84 RALARAFWPGPLTLVLPLKPQSSIHSLAIAGLDSVGIRVPKGFAGALIGAFGRPLAAPSA 143 Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200 N SG +S T+ H+ + + IPLI+D G S +G+ESTIV + ++R+LRPGGL Sbjct: 144 NTSGGVSATSAAHV-EADLGARIPLILDAGPSAVGVESTIVKAEG-GRLRLLRPGGLAAR 201 Query: 201 TLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNI 260 ++R L ++ ++PGML SHYAP + VRL A V P EALI FG+ + Sbjct: 202 EIERVAGQPLLRARTASAAIEAPGMLASHYAPGASVRLNATAVEPGEALIAFGSAAVSGA 261 Query: 261 ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 E+A I L+LS G L EAA NLF+YMK AD SGA SIAFS IP GLG AIN+RL+RAAA Sbjct: 262 ESARIVLDLSPRGDLAEAAANLFDYMKRADASGAQSIAFSPIPEEGLGEAINDRLQRAAA 321 Query: 321 PRN 323 PR+ Sbjct: 322 PRD 324 >gi|149183887|ref|ZP_01862278.1| SUA5 protein [Bacillus sp. SG-1] gi|148848406|gb|EDL62665.1| SUA5 protein [Bacillus sp. SG-1] Length = 348 Score = 350 bits (900), Expect = 1e-94, Method: Composition-based stats. Identities = 99/326 (30%), Positives = 163/326 (50%), Gaps = 18/326 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 + +A +FL +A PTETVYGL ++++ A+ +++ K RP+ NPLI H+S+ + Sbjct: 20 QIVEASQFLKDNEVVAFPTETVYGLGANAKSDEAVDKIFAAKGRPSDNPLIVHISNSEQL 79 Query: 71 KKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + P + + + FWPGPLT++ + TA L + R+P LI Sbjct: 80 NELVEEIPEAAQIMMEHFWPGPLTIIFKKKEGV-LSEKVTAGLDSVGIRMPDHPVALALI 138 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E P+A PSAN SG+ S T H+ + + I +I+GG + +G+EST+V+ E Sbjct: 139 EAANLPIAAPSANVSGRPSPTTAHHV-TQDLDGRISGVINGGETGVGVESTVVDCTSEIP 197 Query: 189 VRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQV--------RL 238 V ILRPGG+ E L+ A L P+SPGM +HYAP + + + Sbjct: 198 V-ILRPGGVTKEQLEEAAGPVLVDPSLAKGEGAPKSPGMKYTHYAPDAPLILLDGKREWI 256 Query: 239 RAIHVNPREALIRFGNVPIKN---IENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 +++ R+A ++ G + + A L L A +L++ ++ ++S Sbjct: 257 QSLVEEKRQAGMKVGILTTEENARFYQADKILVSGSRLDLSTVAHSLYDVLRSFNESDVD 316 Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321 I + P G+G+AI NRL++AA Sbjct: 317 IIFSETFPQEGVGMAIMNRLQKAAGY 342 >gi|209548153|ref|YP_002280070.1| Sua5/YciO/YrdC/YwlC family protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533909|gb|ACI53844.1| Sua5/YciO/YrdC/YwlC family protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 324 Score = 350 bits (899), Expect = 2e-94, Method: Composition-based stats. Identities = 164/303 (54%), Positives = 204/303 (67%), Gaps = 2/303 (0%) Query: 21 AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80 G IAIPTETVYGLA D+ NP AI R+YE K RP NPLICH++D++M ++HA DP+S Sbjct: 24 DGFAIAIPTETVYGLAADATNPAAITRIYETKGRPRFNPLICHMADLAMAEEHAEFDPVS 83 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSA 140 LA FWPGPLTLVL L + IH L+TA L + RVP GF LI +G PLA PSA Sbjct: 84 RALAAAFWPGPLTLVLPLKPQSPIHSLATAGLDSVGVRVPKGFAGALIGAFGRPLAAPSA 143 Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200 N SG IS T+ H+ + + ++PLI+D G S +G+ESTIV V+ + +VR+LRPGGL Sbjct: 144 NTSGAISATSAAHV-EADLGAKVPLILDAGPSTVGVESTIVKVEGD-RVRLLRPGGLAAR 201 Query: 201 TLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNI 260 ++R L ++ ++PGML SHYAP + VRL A V P EALI FG + Sbjct: 202 EIERVAGRPLLRAKTASAAIEAPGMLASHYAPGAAVRLNATAVEPGEALIAFGGAAVSGT 261 Query: 261 ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 A I L+LS G L EAA NLF+YMK AD SGASSIAFS+IP GLG AIN+RL+RAAA Sbjct: 262 NGARIVLDLSPRGDLAEAAANLFDYMKRADASGASSIAFSAIPEEGLGEAINDRLQRAAA 321 Query: 321 PRN 323 PR+ Sbjct: 322 PRD 324 >gi|182420265|ref|ZP_02951494.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium butyricum 5521] gi|237666937|ref|ZP_04526922.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182375860|gb|EDT73452.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium butyricum 5521] gi|237658136|gb|EEP55691.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 349 Score = 350 bits (899), Expect = 2e-94, Method: Composition-based stats. Identities = 106/341 (31%), Positives = 167/341 (48%), Gaps = 29/341 (8%) Query: 4 MSITDSNA--LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 + D + +A + + G +A PTETVYGL D+ N A+++++ K RP NPLI Sbjct: 8 IKNIDEEEYKIEEAAKIIKEGGIVAFPTETVYGLGADALNEDAVKKIFVAKGRPQDNPLI 67 Query: 62 CHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 HV+ ++ + + ++ L FWPGPLT++L I +++A+L + R+P Sbjct: 68 IHVAS-KNIEHYVDEIPEIAKELMDKFWPGPLTIIL--KKNDIIPNITSASLDSIGVRMP 124 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 +KLIE G +A PSAN SG+ S T+++ + + + II G SKIG+EST Sbjct: 125 DNEIARKLIELSGTTIAAPSANISGRPSPTDIERCV-EDLDGRVDYIIGGCHSKIGVEST 183 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRS 234 IV+ + + +LRPGG+ +E LK I + E P++PGM HYAP++ Sbjct: 184 IVDCTVDPPL-VLRPGGITLEMLKEIDSRIEIDKAIMQKPSENLKPKAPGMKYRHYAPKA 242 Query: 235 QVRLRAIHVNPREALIR---------------FGNVPIKNIENAIISLNLSKTGKLKEAA 279 +V + + + A I+ + I + L L A Sbjct: 243 KVTIISGNRKKTVAKIKEMVNYNIEKQKKVCILTVEENEKEYQQGIKITLGSLSDLTTVA 302 Query: 280 FNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 NLF ++ DD GA I + G+G+AI NRL +AA Sbjct: 303 KNLFEALRKCDDLGADLILAEAYEEKGVGVAIMNRLNKAAG 343 >gi|311032025|ref|ZP_07710115.1| sua5/yciO/yrdC/ywlC family protein [Bacillus sp. m3-13] gi|311033339|ref|ZP_07711429.1| sua5/yciO/yrdC/ywlC family protein [Bacillus sp. m3-13] Length = 350 Score = 350 bits (898), Expect = 2e-94, Method: Composition-based stats. Identities = 109/331 (32%), Positives = 168/331 (50%), Gaps = 23/331 (6%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 + +A L +A PTETVYGL ++ + A+ +++E K RP+ NPLI H+S + + Sbjct: 20 QIMEAAGLLKENEVVAFPTETVYGLGANALSDQAVLKIFEAKGRPSDNPLIVHISKLEQL 79 Query: 71 KKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + V + L + FWPGPLTLVL + TA L+T R+P + LI Sbjct: 80 AELVDNVPESAHKLMEAFWPGPLTLVLT--KKEGVSQYVTAGLETLAVRMPDHSVARALI 137 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E G PLA PSAN SG+ S T KH+ + I I+DGG + +GLEST+V+ E Sbjct: 138 EISGLPLAAPSANLSGKPSPTTAKHV-EEDLIHRIAGIVDGGATGVGLESTVVDCTAETP 196 Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV---DETSTPQSPGMLKSHYAPRSQVRLRAI--- 241 + ILRPGG+ E L++ + V+++ + +E P+SPGM +HYAP + V L Sbjct: 197 M-ILRPGGVTKEELEKVVGKVDVDPALFSQEELHKPKSPGMKYTHYAPIAPVYLVEGSAS 255 Query: 242 --HVNPREALIRFGNVPIKNIENAII--------SLNLSKTGKLKEAAFNLFNYMKIADD 291 + A ++ V + E I +++ L A L++ ++ + Sbjct: 256 FMEQTIKGAQLKGHKVGLLATEETIAQIQATEITAISCGTKNDLATVASQLYDGLRAFNA 315 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 + I + P G+G AI NRLE+AA + Sbjct: 316 TDVDVIFSETFPRTGVGAAIMNRLEKAAGHK 346 >gi|187777267|ref|ZP_02993740.1| hypothetical protein CLOSPO_00819 [Clostridium sporogenes ATCC 15579] gi|187774195|gb|EDU37997.1| hypothetical protein CLOSPO_00819 [Clostridium sporogenes ATCC 15579] Length = 355 Score = 350 bits (898), Expect = 2e-94, Method: Composition-based stats. Identities = 95/337 (28%), Positives = 163/337 (48%), Gaps = 26/337 (7%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 D + + KA L G + PTETVYGL ++ + A+++++E K RP NPLI H+S Sbjct: 17 IDEHIISKAGNILRQGGLVVFPTETVYGLGANALDKDAVKKIFEAKGRPQDNPLIVHISK 76 Query: 67 ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 + ++K + P++ L FWPGP+T++L I ++A L + R+P Sbjct: 77 VKDIEKLVEKIPPIAQKLMDKFWPGPMTIIL--KKKDIIPNETSAGLDSIGIRMPSNKIA 134 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 +LI G P+A PSAN SG+ S T+++ + + + I+ G S++G+EST+++ Sbjct: 135 MELISMAGVPIAAPSANLSGKPSPTDLETCV-EDLDGRVNAILGGDNSEVGVESTVIDCT 193 Query: 185 CEKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 + ILRPGG+ +E LK I + D+ P++PGM HYAP++ +++ Sbjct: 194 ID-PPCILRPGGITLEMLKEVDSNIYIDPAIMKKPDKELRPKAPGMKYRHYAPKAPLKII 252 Query: 240 AIHVNPREALI------------RFGNVPIKNI---ENAIISLNLSKTGKLKEAAFNLFN 284 +N I + G + +++ L A NLF Sbjct: 253 KGDLNKTIEKINEMVQNYIDAEKKVGIIATDETIDNYKKGEVVSIGSRKDLNTIAHNLFY 312 Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 ++ D+ I + +G+AI NRL+++A Sbjct: 313 VLRTFDEKNVDLILSEAFEEKDMGVAIMNRLKKSAGY 349 >gi|227821062|ref|YP_002825032.1| Sua5 family protein [Sinorhizobium fredii NGR234] gi|227340061|gb|ACP24279.1| Sua5 family protein [Sinorhizobium fredii NGR234] Length = 324 Score = 349 bits (897), Expect = 3e-94, Method: Composition-based stats. Identities = 160/318 (50%), Positives = 213/318 (66%), Gaps = 2/318 (0%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 I A+ KAC L G P+AIPTETVYGLA D+ N AI R+YE+K RP NPLICHV Sbjct: 8 RIEPDRAIEKACAALSEGEPVAIPTETVYGLAADATNADAISRIYEMKGRPRFNPLICHV 67 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 SD++M + H DPLS LA+ FWPGPLTL+L + +H L++A L+T R+P GF+ Sbjct: 68 SDMAMAEAHVVFDPLSRRLAEAFWPGPLTLILPERRESTVHALASAGLETLGIRMPEGFS 127 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 +++I +G PLA PSAN SG+IS T+ H+ + + ++ LI+D G ++IGLESTI+ V+ Sbjct: 128 RRVISHFGRPLAAPSANTSGKISPTSAAHV-EADLGAKLGLILDAGPAEIGLESTIIKVE 186 Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244 ++R+LRPGGL+ ++ + + +T ++PGML SHYAP + VRL A V Sbjct: 187 -AGRLRLLRPGGLDAAEIEALTGLTVGRPEAAGATIEAPGMLASHYAPGAAVRLNAKDVR 245 Query: 245 PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPN 304 EALIRFG + A I L+LS +G L+EAA NLF+YMK AD SG SSIAF +P+ Sbjct: 246 KGEALIRFGGKALPGESAAAIVLDLSPSGNLREAAANLFDYMKRADASGVSSIAFGPVPS 305 Query: 305 HGLGIAINNRLERAAAPR 322 GLG AI +RLERAAAPR Sbjct: 306 EGLGEAIVDRLERAAAPR 323 >gi|85703463|ref|ZP_01034567.1| Sua5/YciO/YrdC family protein [Roseovarius sp. 217] gi|85672391|gb|EAQ27248.1| Sua5/YciO/YrdC family protein [Roseovarius sp. 217] Length = 313 Score = 349 bits (897), Expect = 3e-94, Method: Composition-based stats. Identities = 138/324 (42%), Positives = 181/324 (55%), Gaps = 14/324 (4%) Query: 1 MQIMSIT-DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 MQ S++ D A E AG +A PTETVYGL D+RN A+ R++E K RP NP Sbjct: 1 MQTRSLSPDPAGFASAAEIWRAGGLVAFPTETVYGLGADARNDLAVARIFEAKGRPRFNP 60 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 LI HV +M + + + LA FWPGPLTLVL +L + L TA+L T RV Sbjct: 61 LIVHVESAAMAQTYVEWSDAAEILASAFWPGPLTLVLPILPGCGLSRLVTADLPTLAIRV 120 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P L+ +G P+A PSAN SG+IS T+ +H+L + + I ++DG +G+ES Sbjct: 121 PAHPIAHALLAEFGGPVAAPSANPSGRISPTSAEHVL-AGLSGRIEAVLDGEACPVGVES 179 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238 TIV + E + LRPGG+ E L+ A+ V LE P +PG + SHYAP +VRL Sbjct: 180 TIVGLAGEPTL--LRPGGIPGEVLEAALGVHLE-LYQTGDAPVAPGQMHSHYAPGVRVRL 236 Query: 239 RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIA 298 A E L+ FG + LNLS +G L EAA NLF ++ D + IA Sbjct: 237 NATDRQEGEVLLGFGPI--------DADLNLSPSGDLVEAAANLFGHLHALDALDVAGIA 288 Query: 299 FSSIPNHGLGIAINNRLERAAAPR 322 S IP+ GLG AIN+RL RAAAPR Sbjct: 289 VSPIPDIGLGRAINDRLRRAAAPR 312 >gi|300853437|ref|YP_003778421.1| putative translation factor [Clostridium ljungdahlii DSM 13528] gi|300433552|gb|ADK13319.1| putative translation factor [Clostridium ljungdahlii DSM 13528] Length = 350 Score = 349 bits (897), Expect = 3e-94, Method: Composition-based stats. Identities = 98/335 (29%), Positives = 169/335 (50%), Gaps = 26/335 (7%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + +A + + G +A PTETVYGL ++ NP A+++++E K RP NPLI H+SDI Sbjct: 14 DMGIVEEAGKVIKEGGLVAFPTETVYGLGANALNPDAVKKIFEAKGRPQDNPLIVHISDI 73 Query: 68 SMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 +K+ V ++ L K FWPGP+T++L + I +++A+L + R+P + Sbjct: 74 EDIKELVVDVPKIAKKLMKKFWPGPMTIILP--KSQVIPDITSASLPSIGIRMPSNIIAR 131 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +LI T P+A PSAN SG+ S T+V+ + + ++ I+ G + ++G+ESTI++ Sbjct: 132 ELIRTSKVPIAAPSANISGRPSPTDVERCI-EDLNGKVDFILGGDMCEVGVESTIIDCTV 190 Query: 186 EKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 +LRPGG+ +E LK I + D+ P++PGM HYAP++ +++ Sbjct: 191 N-PACVLRPGGITLEALKEIDDSIYIDPAVMKKPDKNLRPKAPGMKYRHYAPKAPLKIVK 249 Query: 241 IHVNPREALIR---------------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNY 285 + I K+ + ++L + + NLF Sbjct: 250 GDLKKTIEKINEMVQNYIGENKVVGILATDETKDFYKNGLVISLGSRNNMISISKNLFET 309 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ DD I + +G+G A+ NRL ++A Sbjct: 310 LRSFDDKNVDIIIAEAFDENGIGTAVMNRLNKSAG 344 >gi|331092053|ref|ZP_08340884.1| hypothetical protein HMPREF9477_01527 [Lachnospiraceae bacterium 2_1_46FAA] gi|330402254|gb|EGG81825.1| hypothetical protein HMPREF9477_01527 [Lachnospiraceae bacterium 2_1_46FAA] Length = 534 Score = 349 bits (897), Expect = 3e-94, Method: Composition-based stats. Identities = 102/336 (30%), Positives = 168/336 (50%), Gaps = 25/336 (7%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 + + +A + + G +A PTETVYGL ++ + A ++ YE K RP+ NPLI H++D Sbjct: 41 IEKEVIEQAGKIIQEGGLVAFPTETVYGLGANALDEEAAKKTYEAKGRPSDNPLIIHIAD 100 Query: 67 ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 IS + K ++ ++ LA++FWPGPLT++ + + + +T L T R+P Sbjct: 101 ISHLNKIVQNISKKAMDLAEVFWPGPLTMIFE--KSDIVPYGTTGGLDTVAVRMPDDIIA 158 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 ++LI G ++ PSAN SG+ S T KH+ + I +I+DGG IG+ESTIV++ Sbjct: 159 RELILEGGGYISAPSANTSGRPSPTTAKHV-EEDMSGRIDMILDGGSVDIGVESTIVDMT 217 Query: 185 CEKKVRILRPGGLEIETLKRAIS-VELEYCV---DETSTPQSPGMLKSHYAPRSQVRLRA 240 E + ILRPG + L+ I V+++ + + + P++PGM HYAP++Q+++ Sbjct: 218 AEPPM-ILRPGAVTQRMLEEVIGEVQVDKTLLGEETSEAPKAPGMKYRHYAPKAQLKIVQ 276 Query: 241 IHVNPREALIR---------------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNY 285 + I+ + A + + A NL+ Sbjct: 277 GTLKDEVHAIKQLAYEKTKKGKKVGIIASTETAPQYTAGLIKPIGTRENQSSIAKNLYKV 336 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 ++ DD I S G+G AI NRLE+AA Sbjct: 337 LREFDDENVDCIYSESFSVDGIGSAIMNRLEKAAGH 372 >gi|168182249|ref|ZP_02616913.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum Bf] gi|182674619|gb|EDT86580.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum Bf] Length = 351 Score = 349 bits (896), Expect = 3e-94, Method: Composition-based stats. Identities = 94/337 (27%), Positives = 163/337 (48%), Gaps = 26/337 (7%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 D + + KA + L G + PTETVYGL ++ + A++++++ K RP NPLI H+S Sbjct: 13 IDEHVISKAGDILRQGGLVVFPTETVYGLGANALDKNAVKKIFKAKGRPQDNPLIVHISK 72 Query: 67 ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 + +++ + ++ L FWPGP+T++L I ++A L + R+P Sbjct: 73 MKDIERLVEKIPSVAEKLMDKFWPGPMTIIL--KKKDIIPNETSAGLDSIGIRMPSNKIA 130 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 KLI G P+A PSAN SG+ S T+V+ + + ++ +I+ G S++G+EST+++ Sbjct: 131 MKLISMAGVPIAAPSANLSGKPSPTDVETCI-EDLDGKVNIILGGDNSEVGVESTVIDCT 189 Query: 185 CEKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 ILRPGG+ +E LK I + D+ P++PGM HYAP + +++ Sbjct: 190 IN-PPCILRPGGITLEMLKEVDSNIYIDSAIMKKPDKELKPKAPGMKYRHYAPNAPLKII 248 Query: 240 AIHVNPREALI------------RFGNVPIKNI---ENAIISLNLSKTGKLKEAAFNLFN 284 +N I + G + +++ L A NLF Sbjct: 249 KGDLNKTIEKINEMVQNYIDAEKKVGIIATDETIDNYKKGDVVSIGSRKDLDTIAHNLFY 308 Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 ++ D+ I + +G+AI NRL+++A Sbjct: 309 VLRSFDEKNVDLILSEAFEEKDMGVAIMNRLKKSAGY 345 >gi|149913215|ref|ZP_01901749.1| Sua5/YciO/YrdC family protein [Roseobacter sp. AzwK-3b] gi|149813621|gb|EDM73447.1| Sua5/YciO/YrdC family protein [Roseobacter sp. AzwK-3b] Length = 320 Score = 349 bits (896), Expect = 3e-94, Method: Composition-based stats. Identities = 138/321 (42%), Positives = 183/321 (57%), Gaps = 13/321 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D+ +A E L G +A PTETVYGL D+RN A+ ++E K RP NPLI HV Sbjct: 11 DAQGYARAAEILHEGGRVAFPTETVYGLGGDARNDMAVAGIFEAKGRPRFNPLIVHVESA 70 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + + + L+ LA+ FWPGPLT+VL L T + PL TA L T RVP + Sbjct: 71 QAAQAYVAWSDLAERLARAFWPGPLTMVLPLKPDTGLSPLVTAELPTLAIRVPAHPVAQA 130 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+ T+G P+A PSAN SG+IS T H+L + + I ++DGG +G+ESTI+ + + Sbjct: 131 LLRTFGGPVAAPSANPSGRISPTLAAHVL-AGLDGRIEAVLDGGACDVGVESTILGL-AD 188 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246 V +LRPGG+ E ++ I + + E S +PG L SHYAP + VRL A Sbjct: 189 GPV-LLRPGGIAAEEIEAVIGAPVGHHA-EGSAISAPGQLASHYAPGASVRLNAETRQDG 246 Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306 E L+ FG V LNLS G L+EAA NLF ++ D GA +IA S IP+ G Sbjct: 247 ELLLGFGPVACD--------LNLSPKGDLREAAANLFGHLHALDGQGADAIAVSPIPDTG 298 Query: 307 LGIAINNRLERAAAPRNQSQR 327 LG AIN+RL RAAAPR + R Sbjct: 299 LGRAINDRLRRAAAPRPGTDR 319 >gi|47096963|ref|ZP_00234539.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes str. 1/2a F6854] gi|224500715|ref|ZP_03669064.1| hypothetical protein LmonF1_14001 [Listeria monocytogenes Finland 1988] gi|254828117|ref|ZP_05232804.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes FSL N3-165] gi|254831036|ref|ZP_05235691.1| hypothetical protein Lmon1_06738 [Listeria monocytogenes 10403S] gi|254900320|ref|ZP_05260244.1| hypothetical protein LmonJ_10917 [Listeria monocytogenes J0161] gi|254913441|ref|ZP_05263453.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254937822|ref|ZP_05269519.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes F6900] gi|47014673|gb|EAL05630.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes str. 1/2a F6854] gi|258600502|gb|EEW13827.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes FSL N3-165] gi|258610426|gb|EEW23034.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes F6900] gi|293591448|gb|EFF99782.1| conserved hypothetical protein [Listeria monocytogenes J2818] Length = 345 Score = 349 bits (896), Expect = 3e-94, Method: Composition-based stats. Identities = 114/336 (33%), Positives = 175/336 (52%), Gaps = 19/336 (5%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 ++ ++A + L G +A PTETVYGL D+ N A++++YE K RP+ NPLI H++ Sbjct: 13 SNQAIFQEAAKLLQGGECVAFPTETVYGLGADATNQAAVQKIYEAKGRPSDNPLIVHIAR 72 Query: 67 ISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT- 124 + + AS ++ L + FWPGPLT++L L + + +A L T R+P Sbjct: 73 REQMDQFVASYPAKAIQLMEKFWPGPLTVILPLKKDS-LATNVSAGLSTVGVRMPEHPVS 131 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 LI T P+A PSANRSG+ S T H++ + +I IIDGG + +GLEST+++ Sbjct: 132 LALIGTANIPIAAPSANRSGKPSPTTASHVI-EDLDGKIAGIIDGGATGVGLESTVIDCS 190 Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYC--VDETSTPQSPGMLKSHYAPRSQVRLRAIH 242 E + ILRPGG+ E +++ I ET P++PGM +HYAP++ V L Sbjct: 191 LEIPI-ILRPGGVTKEQIEQIIGPVDISTNNTKETEKPKAPGMKYTHYAPKAPVYLIEGS 249 Query: 243 VNPREALI--------RFGNVPIKNIENAI-ISLNLSKTGK---LKEAAFNLFNYMKIAD 290 ++ I + G + K + N + S + TG L E A +L+ ++ D Sbjct: 250 TQFWQSEINKAEAANKKLGILATKELINQLNTSGTIETTGSIKALDEIATSLYKGLRAFD 309 Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326 + I P LG AI NRLE+AA R ++ Sbjct: 310 HADVDMIFAEVYPEMELGAAIMNRLEKAAGDRRITE 345 >gi|18976678|ref|NP_578035.1| sua5 superfamily-related protein [Pyrococcus furiosus DSM 3638] gi|18892255|gb|AAL80430.1| sua5 superfamily-related protein [Pyrococcus furiosus DSM 3638] Length = 341 Score = 349 bits (896), Expect = 3e-94, Method: Composition-based stats. Identities = 119/333 (35%), Positives = 176/333 (52%), Gaps = 24/333 (7%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 D LR A + G +A PTETVYGL D+ N A RR++E K RPA NPLI H+++ Sbjct: 11 IDERKLRVAARLIREGKLVAFPTETVYGLGADALNEKAARRIFEAKGRPADNPLIVHIAE 70 Query: 67 ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 S V + A V + LAK FWPGPLT+VL + ++T L T R+P Sbjct: 71 FSQVYELAREVPEEAKMLAKKFWPGPLTIVLPRREI--VPDVTTGGLDTVAIRMPANEIA 128 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 KLI+ G P+A PSAN SG+ S T +H+ + +I IIDGG +KIG+EST++++ Sbjct: 129 LKLIKLSGRPIAAPSANISGKPSPTTAEHV-ADDFYGKIECIIDGGETKIGVESTVIDLT 187 Query: 185 CEKKVRILRPGGLEIETLKRAIS-VELEYCV--DETSTPQSPGMLKSHYAPRSQV----- 236 V +LRPGGL +E +++ I V + V + +SPGM HYAP ++V Sbjct: 188 EWPPV-LLRPGGLPLEEIEKVIGEVRIHPAVFGKKVDVAKSPGMKYKHYAPDAEVIVVEG 246 Query: 237 -------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIA 289 ++ + +E R G + ++ NA L +T ++E A NLF ++ Sbjct: 247 PKEKVKRKIAELVKEFKEKGKRVGVIGSESY-NADEFFYLGET--VEEVARNLFKALRYM 303 Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 D + + + GLG+A+ NRL +AA + Sbjct: 304 DKAKVDIVLAEGVEEKGLGLAVMNRLRKAAGYK 336 >gi|254172885|ref|ZP_04879559.1| Sua5/YciO/YrdC/YwlC [Thermococcus sp. AM4] gi|214033041|gb|EEB73869.1| Sua5/YciO/YrdC/YwlC [Thermococcus sp. AM4] Length = 343 Score = 348 bits (895), Expect = 5e-94, Method: Composition-based stats. Identities = 112/336 (33%), Positives = 173/336 (51%), Gaps = 24/336 (7%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 M LR A + G +A PTETVYGL D+ N A+RR++E K RPA NPLI H Sbjct: 7 MKAGPDERLRVAARLIREGKLVAFPTETVYGLGADALNEKAVRRIFEAKGRPADNPLIIH 66 Query: 64 VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 +++ + + A + +L LA+ FWPGPLTLVL + ++T L T R+P Sbjct: 67 IAEREWLFELARDIPEKALELAERFWPGPLTLVLP--KGERVPSVTTGGLDTVAVRMPAH 124 Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 +LI G P+A PSAN SG+ S T+ H++ I I+DGG + IG+EST++ Sbjct: 125 PIALELIRLSGRPVAAPSANISGKPSPTDADHVV-DDFYGRIECIVDGGPTWIGVESTVL 183 Query: 182 NVQCEKKVRILRPGGLEIETLKRAIS-VELEYCVDETST--PQSPGMLKSHYAPRSQV-- 236 ++ + V +LRPGGL +E ++ + VE+ V ++PGM HY+P +QV Sbjct: 184 DLTGDVPV-LLRPGGLPLEEIEMVVGRVEIHPAVKGVEVDLARAPGMKYKHYSPNAQVIV 242 Query: 237 ----------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYM 286 ++ + R +R G + + A +L ++ ++ A N+F + Sbjct: 243 VEGSRNAVREKIDELVREFRGKGLRVGVMATEE-HGADAFFHLGEST--EDVARNVFRAL 299 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 + D +G I + GLG+A+ NRL +AA R Sbjct: 300 RELDKAGVDVIIAEGVEERGLGLAVMNRLRKAAGYR 335 >gi|170761511|ref|YP_001785471.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum A3 str. Loch Maree] gi|169408500|gb|ACA56911.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum A3 str. Loch Maree] Length = 351 Score = 348 bits (895), Expect = 5e-94, Method: Composition-based stats. Identities = 96/337 (28%), Positives = 164/337 (48%), Gaps = 26/337 (7%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 D + + KA + L G + PTETVYGL ++ + A++++++ K RP NPLI H+S Sbjct: 13 IDEDVISKAGDTLRRGGLVVFPTETVYGLGANALDKNAVKKIFKAKGRPQDNPLIVHISK 72 Query: 67 ISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 + ++K P ++ L FWPGP+T++L I ++A L + R+P Sbjct: 73 MKDIEKLVEEIPSVAEKLMDKFWPGPMTIIL--KKKDIIPNETSAGLDSIGIRMPSNKIA 130 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 KLI G P+A PSAN SG+ S T+V+ + + ++ +I+ G S++G+EST+++ Sbjct: 131 MKLISMAGVPIAAPSANLSGKPSPTDVETCI-EDLDGKVNIILGGDNSEVGVESTVIDCT 189 Query: 185 CEKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 ILRPGG+ +E LK I + D+ P++PGM HYAP++ +++ Sbjct: 190 IN-PPCILRPGGITLEMLKEVDSNIYIDPAIMEKPDKELKPKAPGMKYRHYAPKAPLKII 248 Query: 240 AIHVNPREALI------------RFGNVPIKNI---ENAIISLNLSKTGKLKEAAFNLFN 284 +N I + G + +++ L A NLF Sbjct: 249 KGDLNKTIEKINEMVQNYIDAEKKVGIIATDETIDNYKKGDVVSIGSRKDLNTIAHNLFY 308 Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 ++ D+ I + +G+AI NRL+++A Sbjct: 309 VLRSFDEKNVDLILSEAFEEKDMGVAIMNRLKKSAGY 345 >gi|170755509|ref|YP_001779769.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum B1 str. Okra] gi|169120721|gb|ACA44557.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum B1 str. Okra] Length = 351 Score = 348 bits (895), Expect = 5e-94, Method: Composition-based stats. Identities = 92/337 (27%), Positives = 161/337 (47%), Gaps = 26/337 (7%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 D + + +A + L G + PTETVYGL ++ + A++ ++E K RP NPLI H+S Sbjct: 13 IDEHVISEAGDILRQGGLVVFPTETVYGLGANALDKNAVKGIFEAKGRPQDNPLIVHISK 72 Query: 67 ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 I + + + P++ L FWPGP+T++L I ++A L + R+P Sbjct: 73 IKDIDELVKKIPPIAEKLMDKFWPGPMTIIL--KKKDIIPNETSAGLDSIGIRMPSNKIA 130 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 +LI G P+A PSAN SG+ S T+++ + + + +I+ G S++G+EST+++ Sbjct: 131 MELISMAGVPIAAPSANLSGKPSPTDIETCI-EDLDGRVNMILGGDNSEVGVESTVIDCT 189 Query: 185 CEKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 ILRPGG+ +E +K I + + P++PGM HYAP++ +++ Sbjct: 190 IN-PPCILRPGGITLEMVKEVDSNIYIDPAIMKKPGKDLKPKAPGMKYRHYAPKAPLKII 248 Query: 240 AIHVNPREALI------------RFGNVPIKNI---ENAIISLNLSKTGKLKEAAFNLFN 284 +N I + G + +++ L A NLF Sbjct: 249 KGDLNKTIEKINEMVQNYIDAEKKVGIIATDETIDNYKKGDVVSIGSRKDLNTIAHNLFY 308 Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 ++ D+ I + +G+AI NRL+++A Sbjct: 309 VLRSFDEKNVDLILSEAFEEKDMGVAIMNRLKKSAGY 345 >gi|57640883|ref|YP_183361.1| putative translation factor Sua5p-like protein [Thermococcus kodakarensis KOD1] gi|57159207|dbj|BAD85137.1| putative translation factor Sua5p homolog [Thermococcus kodakarensis KOD1] Length = 339 Score = 348 bits (894), Expect = 6e-94, Method: Composition-based stats. Identities = 116/330 (35%), Positives = 172/330 (52%), Gaps = 23/330 (6%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D ++ A + G +A PTETVYGL D+ N A+RR++E K RPA NPLI H++ I Sbjct: 12 DEKKIKVAARLILEGKLVAFPTETVYGLGADALNEGAVRRIFEAKGRPADNPLIIHIASI 71 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126 ++K A V + LA+ FWPGPLTLVL ++ ++T L T R+P Sbjct: 72 DDLEKVAREVPEKAKLLAERFWPGPLTLVLPKRE--EVPLVTTGGLDTVAVRMPAHPIAL 129 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 + PLA PSAN SG+ S T+ +H++ K I IIDGG + +G+EST+V++ E Sbjct: 130 ALIRASTPLAAPSANISGKPSPTSAEHVIDDFYGK-IEGIIDGGETWVGVESTVVDLTEE 188 Query: 187 KKVRILRPGGLEIETLKRAIS-VELEYCVDETST--PQSPGMLKSHYAPRSQV------- 236 V +LRPGG+ +E L++ I + + V ++PGM HYAP + V Sbjct: 189 PPV-LLRPGGIPLEELEKVIGPIRIHPAVKGKKIDLAKAPGMKYKHYAPNAMVIVVEGTP 247 Query: 237 -----RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291 +++ + R+ R G + +E A L KT L+E A NLF ++ D Sbjct: 248 ENRRRKIQELVDEYRKKGHRVGVMATFEVE-ADEFYFLGKT--LEEVARNLFKALRELDK 304 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAAP 321 G I + G+G+A+ NRL +AA Sbjct: 305 RGVDVIIAEGVEEVGVGLAVMNRLRKAAGY 334 >gi|229542479|ref|ZP_04431539.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus coagulans 36D1] gi|229326899|gb|EEN92574.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus coagulans 36D1] Length = 353 Score = 348 bits (894), Expect = 6e-94, Method: Composition-based stats. Identities = 109/334 (32%), Positives = 167/334 (50%), Gaps = 20/334 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 L +A + L +A PTETVYGL D+ + A+ ++++ K RP+ NPLI H+++ + Sbjct: 20 QLAEAAQLLKEKQTVAFPTETVYGLGADATSDEAVDKIFKAKGRPSDNPLIVHIAEEKQL 79 Query: 71 KKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLI 128 ++ A P + L K FWPGPLTLV+ + + TA L T R+P LI Sbjct: 80 EELAEEIPETAKVLMKAFWPGPLTLVVKVKKGA-LSEKVTAGLDTVGIRMPRHPVALALI 138 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 G P+A PSANRSG+ S T +H+ + +I I+DGG + +G+EST+++V E Sbjct: 139 RMSGLPIAAPSANRSGKPSPTLARHV-REDLAGKIAGIVDGGETGVGVESTVLDVTAEVP 197 Query: 189 VRILRPGGLEIETLKRAIS-VELEYCVDETST---PQSPGMLKSHYAPRSQVRLRAIHVN 244 V ILRPGG+ E L+ I V L+ + T P++PGM +HYAP + V L + Sbjct: 198 V-ILRPGGVTKEQLEERIGKVRLDPGLKGTGAGARPKAPGMKYTHYAPDAPVYLVDGSIA 256 Query: 245 PREALIRFGN-----------VPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293 + +I I A + + L+ A +L++ ++ + Sbjct: 257 FMQQMIDAHRKKGEVTGAIVTEETSGIVRADVVAVCGRRASLETVAQHLYDTLRSFNAQK 316 Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAAPRNQSQR 327 I P G+G AI NRLE+AA R + Sbjct: 317 VDVIFSEIFPREGIGRAIMNRLEKAAGHRYVKEE 350 >gi|153956296|ref|YP_001397061.1| hypothetical protein CKL_3705 [Clostridium kluyveri DSM 555] gi|219856613|ref|YP_002473735.1| hypothetical protein CKR_3270 [Clostridium kluyveri NBRC 12016] gi|146349154|gb|EDK35690.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555] gi|219570337|dbj|BAH08321.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 350 Score = 348 bits (894), Expect = 6e-94, Method: Composition-based stats. Identities = 96/335 (28%), Positives = 172/335 (51%), Gaps = 26/335 (7%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D +++A E + G +A PTETVYGL ++ +P A+ ++++ K RP NPLI H+++I Sbjct: 14 DIEIIKEAGEIIRNGGLVAFPTETVYGLGANALDPEAVEKIFKAKGRPQDNPLIVHIAEI 73 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 +K A + P++L + FWPGP+T++L ++ + +++A+L + R+P + Sbjct: 74 EDMKPLAIDISPVALKFIQNFWPGPMTVILP--KSSIVPDITSASLDSVGIRMPSNVIAR 131 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +LI+ P+A PSAN SG+ S T+V + + ++ LI+ G + +G+EST+++ Sbjct: 132 ELIKAAKVPIAAPSANVSGKPSPTDVDRCI-EDLNGKVDLILGGSMCDVGVESTVIDCTV 190 Query: 186 EKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 ILRPGG+ +E L+ I + + + P+SPGM HYAP + V++ Sbjct: 191 SPSC-ILRPGGITLEMLREIEKEVYIDPAIMKKAEGNNRPKSPGMKYRHYAPNAPVKIVK 249 Query: 241 IHVNPREALIR---------------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNY 285 ++N A I + + +++ + + NLF Sbjct: 250 GNLNKTIAKINEMVENYISENKAVGIIATDETREFYKNALVISVGSRHNMLSVSKNLFET 309 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ DDS I + G+G+AI NRL ++A Sbjct: 310 LRSFDDSKVDIIISEAFEEKGIGLAIMNRLNKSAG 344 >gi|299821849|ref|ZP_07053737.1| Sua5/YciO/YrdC/YwlC family protein [Listeria grayi DSM 20601] gi|299817514|gb|EFI84750.1| Sua5/YciO/YrdC/YwlC family protein [Listeria grayi DSM 20601] Length = 343 Score = 348 bits (894), Expect = 6e-94, Method: Composition-based stats. Identities = 107/340 (31%), Positives = 171/340 (50%), Gaps = 18/340 (5%) Query: 2 QIMSITDSNALRKAC-EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 ++ + + + +A + L AG IA PTETVYGL D+ N A+ ++Y K RP+ NPL Sbjct: 7 KLTDTSSNEEIYQAATDLLKAGECIAFPTETVYGLGADATNEAAVDKIYTAKGRPSDNPL 66 Query: 61 ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I H++ + ++ V + L K FWPGPLT++L L + + + TA L++ R+ Sbjct: 67 IVHIAHLEQLESLVTDVPDKAKELIKHFWPGPLTIILPLKAGS-LAKNVTAGLQSVGIRM 125 Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P + G PLA PSAN SG+ S T +H+ + +I IIDGG + +GLES Sbjct: 126 PENEVAHDFLAYSGLPLAAPSANSSGRPSPTTAQHV-QEDLTGKIAGIIDGGDTGVGLES 184 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAIS--VELEYCVDETSTPQSPGMLKSHYAPRSQV 236 T+++ ILRPGG+ E ++ I E P++PGM +HYAP++ V Sbjct: 185 TVIDCTVPIPA-ILRPGGVTQEEIEAVIGQLAYTAVTSKEAEAPKAPGMKYTHYAPQAPV 243 Query: 237 RLRAIHVNPREALIRFGNVP-------IKNIENAIISLNL---SKTGKLKEAAFNLFNYM 286 L I I + A++ ++ S L EAA +L++ + Sbjct: 244 YLIEGSSAYWIKQIEAAKARGEKPGLLISEKQKAVLQQDIPVYSTGNSLAEAATHLYDGL 303 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326 + D + I + P G+G+A+ NRLE+AA + ++ Sbjct: 304 RSFDHLDVTCIFAETYPQAGIGVALMNRLEKAAGGKYLTE 343 >gi|210614126|ref|ZP_03290062.1| hypothetical protein CLONEX_02275 [Clostridium nexile DSM 1787] gi|210150827|gb|EEA81835.1| hypothetical protein CLONEX_02275 [Clostridium nexile DSM 1787] Length = 521 Score = 348 bits (894), Expect = 7e-94, Method: Composition-based stats. Identities = 106/335 (31%), Positives = 165/335 (49%), Gaps = 25/335 (7%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D+ + +A E L+ G +A PTETVYGL ++ N A R+ YE K RP+ NPLI H++DI Sbjct: 28 DTEIIAEAGEILEKGGLVAFPTETVYGLGANALNEEAARKTYEAKGRPSDNPLIVHIADI 87 Query: 68 SMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125 + + P + + FWPGPLTL+ + + + +T L+T R+P + Sbjct: 88 QALDEIVEFIPEKAKSIVEKFWPGPLTLIFE--KSGVVPLGTTGGLQTVAVRMPEDEIAR 145 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LI G ++ PSAN SG+ S T+ +H+ + + +I +IIDGG +IG+ESTIV++ Sbjct: 146 ALIRAGGGYVSAPSANTSGRPSPTSAEHV-AEDLDGKIDMIIDGGNVEIGVESTIVDMTV 204 Query: 186 EKKVRILRPGGLEIETLKRAIS-VELEYCV---DETSTPQSPGMLKSHYAPRSQVRLRAI 241 E + ILRPG + E L+ I V ++ + P++PGM HYAP++Q+ + Sbjct: 205 EPPM-ILRPGAITKEMLEEVIGEVAVDRTTLSETSDAAPKAPGMKYRHYAPKAQLVIVNG 263 Query: 242 HVNPREALIR---------------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYM 286 IR N+ I ++ A NL+ + Sbjct: 264 APLEAVKAIRQLAYEQMRRGNQVGIIATSETANLYTNGIVKSIGTRANENSIAKNLYKVL 323 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 + DD + I + G+G AI NRL +AA Sbjct: 324 REFDDEEVAYIFSEAFAVEGIGNAIMNRLIKAAGH 358 >gi|23100449|ref|NP_693916.1| hypothetical protein OB2994 [Oceanobacillus iheyensis HTE831] gi|22778682|dbj|BAC14950.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 339 Score = 348 bits (893), Expect = 8e-94, Method: Composition-based stats. Identities = 106/325 (32%), Positives = 161/325 (49%), Gaps = 17/325 (5%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 + + +++A L AG +A PTETVYGL D+ NP A+ ++++ K RP NPLI HV+ Sbjct: 14 NQSYIKEAAGILQAGQTVAFPTETVYGLGADATNPQAVSKIFQAKGRPEDNPLIAHVATK 73 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 +++ S+ L F PGPLT +L S TA L T R+P Sbjct: 74 EQLQRLVTSIPGYVDKLIAAFSPGPLTFILP--SNGICASNVTAGLDTIGVRIPNHPVAL 131 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +L++ P+A PSAN SG+ S T H+ + + I ++DGG + +GLEST+++ Sbjct: 132 QLLKEVDIPIAAPSANISGKPSPTTADHVFND-LEGRIAGLVDGGPTGVGLESTVIDCTQ 190 Query: 186 EKKVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 E V ILRPGG+ E L+ I L +D P+SPGM HYAP + + Sbjct: 191 EIPV-ILRPGGVTKENLESVIGHVLVDPGIIDGEGKPKSPGMKYKHYAPEVPLWIFEGDS 249 Query: 244 NPREALI--------RFGNVPIKNIENAIISLNLSKTGK-LKEAAFNLFNYMKIADDSGA 294 N + LI R G + + N+ + G ++E A +L++ ++ Sbjct: 250 NGFQELIEKEQQSNHRVGVLCSNQFAVQLSHDNIYQLGDSMEEIASSLYDGLRYFKQQAV 309 Query: 295 SSIAFSSIPNHGLGIAINNRLERAA 319 I S P G+G AI NRL +A+ Sbjct: 310 DVIICESFPESGIGQAIMNRLRKAS 334 >gi|315652210|ref|ZP_07905205.1| Sua5/YciO/YrdC/YwlC family protein [Eubacterium saburreum DSM 3986] gi|315485516|gb|EFU75903.1| Sua5/YciO/YrdC/YwlC family protein [Eubacterium saburreum DSM 3986] Length = 366 Score = 348 bits (893), Expect = 9e-94, Method: Composition-based stats. Identities = 105/344 (30%), Positives = 175/344 (50%), Gaps = 30/344 (8%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 I + +R A + + +G +A PTETVYGL D+ A +++Y K RP+ NPLI Sbjct: 21 IDKLYQDEDIRLAADIIKSGGLVAFPTETVYGLGADAFMEEAAKKIYVAKGRPSDNPLIV 80 Query: 63 HVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 H+S+I V A + + LAK +WPGP+T+VL + + ++ L T R+P Sbjct: 81 HISEIREVDDIAECIPDIFYSLAKKYWPGPMTVVLKKRNI--VPDATSGGLDTVAVRLPD 138 Query: 122 -GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 + +I+ G P+A PSAN SG+ S T +H+L + +I +IIDGG IG+ESTI Sbjct: 139 NNIARAIIKESGVPIAAPSANTSGRPSPTKARHVL-EDMNGKIDMIIDGGTVGIGVESTI 197 Query: 181 VNVQCEKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQ 235 +++ + +LRPG + +E L+ I +E+ + P++PGM HYAP++ Sbjct: 198 IDLTSDIP-TLLRPGAVTLEMLENTCKRVDIDPAIEHLLTGNEAPKAPGMKYKHYAPKAD 256 Query: 236 VRLRAIHVNPREALIRF---------GNVPIKNIENA----------IISLNLSKTGKLK 276 ++L + + ++ + + ++ I L+L + + Sbjct: 257 MKLVRGNESDVSKYLKGQIQNSDRLTAVLTVDEHKDMFDTVSSEKSNIKVLSLGSSKNPE 316 Query: 277 EAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 A+NLF+ ++ D+ G I S G+G AI NRL++AA Sbjct: 317 SIAYNLFDILRKCDELGVEYIFSESFDERGIGKAIMNRLKKAAG 360 >gi|227529625|ref|ZP_03959674.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus vaginalis ATCC 49540] gi|227350415|gb|EEJ40706.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus vaginalis ATCC 49540] Length = 351 Score = 347 bits (892), Expect = 1e-93, Method: Composition-based stats. Identities = 107/332 (32%), Positives = 174/332 (52%), Gaps = 19/332 (5%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + + +A + + G +A PTETVYGL D+ N A++ +Y K RP+ NPLI HV+ + M Sbjct: 21 DEINQAAKAIQDGKLVAFPTETVYGLGADATNEAAVKNVYLAKGRPSDNPLIVHVASVEM 80 Query: 70 VKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 V+++ASV P + L K FWPG LT++L++ + T L T FR P C T L Sbjct: 81 VERYASVIPDNARKLMKKFWPGSLTIILNIKKGV-LSKTVTGGLSTVAFRFPDCQPTLDL 139 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I+ G P+ PSAN SG+ S T +H+ + +I IID G +++G+EST++++ + Sbjct: 140 IKKAGVPIVGPSANTSGKPSPTTAQHVY-HDLHGKIAGIIDNGPTRVGVESTVLDMSTDH 198 Query: 188 KVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245 V ILRPG + ++ I + V + TP++PGM HYAP +QV + + Sbjct: 199 PV-ILRPGAVTKHQIEEVIGSIDLNHHHVGKNETPKAPGMKYKHYAPNAQVYIVDEGTDW 257 Query: 246 REALIRFGNVPI--------KNIENAIISLN---LSKTGKLKEAAFNLFNYMKIADDS-G 293 ++ + P K ++ A + +N S + +A+ LF+ ++ DD Sbjct: 258 KQVVDWIKQQPFDVGMMAEEKILQQATLPMNAIQFSLGKNVADASARLFDGLRQFDDQPN 317 Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325 +I + P LG A NRL ++A + + Sbjct: 318 VKAIVTQAFPAKDLGRAYMNRLNKSAGGEHFA 349 >gi|240103997|ref|YP_002960306.1| Translation factor, putative, Sua5/YciO/YrdC/YwlC family [Thermococcus gammatolerans EJ3] gi|239911551|gb|ACS34442.1| Translation factor, putative, Sua5/YciO/YrdC/YwlC family [Thermococcus gammatolerans EJ3] Length = 343 Score = 347 bits (892), Expect = 1e-93, Method: Composition-based stats. Identities = 117/336 (34%), Positives = 174/336 (51%), Gaps = 24/336 (7%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 M L+ A + G +A PTETVYGL D+ N A+RR++E K RPA NPLI H Sbjct: 7 MRAGPDERLKVAARLIVEGKLVAFPTETVYGLGADALNERAVRRIFEAKGRPADNPLIIH 66 Query: 64 VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 +++ + + A V ++L LA+ FWPGPLTLVL + ++T L T R+P Sbjct: 67 IAESEWLFELAREVPEVALRLAERFWPGPLTLVLP--KGEKVPSVTTGGLDTVAVRMPAH 124 Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 +LI G P+A PSAN SG+ S T H++ I IIDGG + IG+EST++ Sbjct: 125 PIALELIRLSGRPIAAPSANISGKPSPTEADHVV-DDFYGRIECIIDGGPTPIGVESTVL 183 Query: 182 NVQCEKKVRILRPGGLEIETLKRAIS-VELEYCVDETST--PQSPGMLKSHYAPRSQVRL 238 ++ E V +LRPGGL +E ++R I V++ V ++PGM HY+P +QV L Sbjct: 184 DLTGEVPV-LLRPGGLPLEDIERVIGRVDVHPAVKGIEVNLAKAPGMKYKHYSPNAQVIL 242 Query: 239 ------------RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYM 286 I R ++ G + + +A +L + ++E A N+F + Sbjct: 243 VEGPREAVRRKMEEIVEEFRSRGLKVGVMATEKY-DADAFFHLGE--SMEEVARNVFRAL 299 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 + D +G I I GLG+A+ NRL +AA + Sbjct: 300 RELDKAGVDVILAEGIEERGLGLAVMNRLRKAAGYK 335 >gi|209886040|ref|YP_002289897.1| Sua5/YciO/YrdC/YwlC family protein [Oligotropha carboxidovorans OM5] gi|209874236|gb|ACI94032.1| Sua5/YciO/YrdC/YwlC family protein [Oligotropha carboxidovorans OM5] Length = 322 Score = 347 bits (891), Expect = 1e-93, Method: Composition-based stats. Identities = 137/324 (42%), Positives = 183/324 (56%), Gaps = 7/324 (2%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M + + A R A E L AG +A PTETVYGL D N +AI RLYE K RP+ NPL Sbjct: 1 MTTKILPAAEATRPAAECLAAGGLVAFPTETVYGLGADGTNGSAIARLYEAKGRPSFNPL 60 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 I HV + ++ A + + LA+ FWPGPLTLVL + + L+TA L+T R+P Sbjct: 61 IAHVPTLEAAQRIARFNDTAFKLARAFWPGPLTLVLPKTADCPVSDLATAGLETVAVRIP 120 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + +++ G P+ PSANRSG +S T H+ + I LI+DGG ++G+EST Sbjct: 121 AHPVAQAILQALGRPIVAPSANRSGHVSPTTAAHV-RDDLDGRIDLIVDGGPVQVGVEST 179 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEY-CVDETSTPQSPGMLKSHYAPRSQVRL 238 IV +LRPGG ++ + L + P +PGML SHYAP + VRL Sbjct: 180 IVGCT--GTPILLRPGGTPRAAIEAVLGTPLARQPAPVQNGPLAPGMLASHYAPSANVRL 237 Query: 239 RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIA 298 A + EAL+ FG P A +LNLS G L EAA NLF++++ D++GA +IA Sbjct: 238 NATELRNGEALLAFG--PPLPGAPAGRTLNLSPRGDLIEAAANLFSHLRALDETGARTIA 295 Query: 299 FSSIPNHGLGIAINNRLERAAAPR 322 IP GLG AIN+RL RAAA R Sbjct: 296 VMPIPTAGLGEAINDRLRRAAAER 319 >gi|294501877|ref|YP_003565577.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus megaterium QM B1551] gi|294351814|gb|ADE72143.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus megaterium QM B1551] Length = 346 Score = 347 bits (891), Expect = 1e-93, Method: Composition-based stats. Identities = 92/326 (28%), Positives = 160/326 (49%), Gaps = 19/326 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 + +A + L +A PTETVYGL D+ + A+ +++ K RP+ NPLI H+ D + Sbjct: 20 QIEEAADLLRNHEVVAFPTETVYGLGGDATSDKAVDKIFAAKGRPSDNPLIVHIGDKEQL 79 Query: 71 KKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + + + FWPGPLT++L + TA L + R+P L+ Sbjct: 80 HTFVESIPSKAEKVIDAFWPGPLTVILP--KKDRVSDKVTAGLNSIAVRMPSHPVALALL 137 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 + P+A PSAN SG+ S T H+++ + I ++DGG + +G+EST+++ E Sbjct: 138 KKVALPIAAPSANLSGKPSPTLAHHVMND-LEGRISGVVDGGATGVGVESTVLDCTEEIP 196 Query: 189 VRILRPGGLEIETLKRAIS-VELEYC-VDETSTPQSPGMLKSHYAPRSQVRL-------- 238 + ILRPGG+ + L+ I V+++ + + P+SPGM +HYAP + + + Sbjct: 197 I-ILRPGGITQKELENVIGPVKVDRALLSDKEAPKSPGMKYTHYAPDAPLVIVDGSSDFF 255 Query: 239 RAIHVNPREALIRFGNVPIKNIEN---AIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 ++I ++ R G + E+ A + L+ A +L+ ++ ++ Sbjct: 256 QSIIDGYKDQGKRVGVLTTSEHEDAYKADAVITCGSRSNLETVASHLYESLRSFNECDVD 315 Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321 I S G+G A+ NRL +AA Sbjct: 316 IIVSESFSEEGVGHAVMNRLMKAAGH 341 >gi|126734644|ref|ZP_01750390.1| Sua5/YciO/YrdC family protein [Roseobacter sp. CCS2] gi|126715199|gb|EBA12064.1| Sua5/YciO/YrdC family protein [Roseobacter sp. CCS2] Length = 348 Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats. Identities = 132/316 (41%), Positives = 177/316 (56%), Gaps = 13/316 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L KA E L AG ++ PTETVYGL D+ N A+ R+YE K RP+ NPLI HV D+ Sbjct: 45 DVAGLEKAAEILRAGGLVSFPTETVYGLGADACNDRAVARIYEAKGRPSFNPLIVHVPDM 104 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-K 126 + +++ + + LA+ FWPG LTLVL + + I L TA L T RVP Sbjct: 105 AAAERYCDFNETARQLAQAFWPGALTLVLPVKAEAGISKLVTAGLDTLAIRVPDHPVAGA 164 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+ + P+A PSAN SG +S T H+ ++ + I +IDGG +G+ESTIV+ Sbjct: 165 LLSAFAGPVAAPSANPSGYVSPTMAAHV-AAGLGDRIDAVIDGGACLVGVESTIVSCV-- 221 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246 +LR GG +E L+ + L + T +PG L SHYAP+ +VRL A + Sbjct: 222 GTPSLLRAGGTPVEVLEACLGRPL-VASQDPDTLTAPGQLASHYAPQGKVRLNAPYAQEG 280 Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306 E L+ FG V + LNLS G L +AA LF + D GA +IA S IP+HG Sbjct: 281 EVLLGFGPVEAE--------LNLSAAGDLTQAAARLFACLHELDAMGAKAIAVSPIPDHG 332 Query: 307 LGIAINNRLERAAAPR 322 LG AIN+RL+RA APR Sbjct: 333 LGRAINDRLKRAGAPR 348 >gi|163732340|ref|ZP_02139786.1| Sua5/YciO/YrdC family protein [Roseobacter litoralis Och 149] gi|161394638|gb|EDQ18961.1| Sua5/YciO/YrdC family protein [Roseobacter litoralis Och 149] Length = 331 Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats. Identities = 126/315 (40%), Positives = 176/315 (55%), Gaps = 15/315 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A + L G +A PTETVYGL D+RN A+ ++E K RP+ NPLI HV D + Sbjct: 30 PDGIAQAADLLRTGALVAFPTETVYGLGADARNGRAVAAIFEAKGRPSFNPLIVHVLDAT 89 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127 ++ + LA FWPGPL+LVL L + L +A L T RVP + L Sbjct: 90 HARRFCHWSDTAEKLASAFWPGPLSLVLPLTEGHGLSSLVSAGLSTVALRVPAHPTARAL 149 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + + P+A PSAN SG+IS T +H+ S + + I+D G ++GLESTIV + + Sbjct: 150 LRAFDGPVAAPSANPSGKISPTTAQHV-SDGLGMRVGAILDDGPCRVGLESTIVGL--DG 206 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 +LRPGGL E ++R + +L + +PG L SHYAP +VRL A + E Sbjct: 207 PASLLRPGGLPAEEIERVLGQKLSRETEG--KISAPGQLMSHYAPNGRVRLNAQRAHDGE 264 Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307 + FG + LNLS +G L EAA LF+ + D +G S+IA + IP GL Sbjct: 265 VFLGFGEMTCD--------LNLSPSGDLTEAASVLFDCLHQLDATG-SAIAVAPIPRQGL 315 Query: 308 GIAINNRLERAAAPR 322 G AIN+RL+RAAAPR Sbjct: 316 GAAINDRLQRAAAPR 330 >gi|296109437|ref|YP_003616386.1| Sua5/YciO/YrdC/YwlC family protein [Methanocaldococcus infernus ME] gi|295434251|gb|ADG13422.1| Sua5/YciO/YrdC/YwlC family protein [Methanocaldococcus infernus ME] Length = 313 Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats. Identities = 113/320 (35%), Positives = 175/320 (54%), Gaps = 15/320 (4%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 I+ T+ N ++KA E + G +A PTETVYGL D+ N A+ +++E+K+RP ++P+I Sbjct: 2 ILKATEEN-IKKAAEVIRKGGLVAFPTETVYGLGADALNKEAVAKIFEVKQRPLIDPVIV 60 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 H+S ++K A L+ LAK FWPGPLT+VL + + TA L R+P Sbjct: 61 HISKFEDLEKLAYPTELAYKLAKAFWPGPLTMVLP--KKEVVPSIVTAGLDFVAIRMPAH 118 Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 KLIE +A PSAN ++S T +H+ + ++ +I+DGG +G+ESTI+ Sbjct: 119 PVALKLIEESKTFIAAPSANLFSKLSPTRAEHVY-EQLGDKVDIILDGGKCDVGVESTII 177 Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241 ++ E ILR GGL++E +++ I E ++PGMLK HY+P + +++ Sbjct: 178 DLTTE-PPTILRLGGLDVEAIEKVIGEV--KITKENKKIKAPGMLKKHYSPTTPLKIMKE 234 Query: 242 ---HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIA 298 N R L+ F P + E I LS+ G L+EAA NL++ + D I Sbjct: 235 PKPIPNLRCGLLAF-KEPREGFEVVEI---LSRKGDLREAAANLYDSLHRLDKQNLDIII 290 Query: 299 FSSIPNHGLGIAINNRLERA 318 ++P GLG AI +RL +A Sbjct: 291 AEAVPEVGLGRAIMDRLRKA 310 >gi|28210066|ref|NP_781010.1| SUA5 protein [Clostridium tetani E88] gi|28202501|gb|AAO34947.1| SUA5 protein [Clostridium tetani E88] Length = 350 Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats. Identities = 93/335 (27%), Positives = 165/335 (49%), Gaps = 26/335 (7%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 ++ L++ E L G + PTETVYGL ++ A+++++E K RP NPLI H+S++ Sbjct: 14 ENKILKECGEALRNGKLVVFPTETVYGLGANALKEDAVKKIFEAKGRPQDNPLIVHISEL 73 Query: 68 SMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + P ++ L + FWPGP+T++L ++ I ++ L + R+P + Sbjct: 74 EEIAPLVEEVPKIAYKLMEKFWPGPMTIILP--KSSLIPSRTSGGLNSVGIRMPSNEIAR 131 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 KLI+ P+A PSAN SG+ S TN++ + + ++ II G +G+EST+++ Sbjct: 132 KLIKEAKVPIAAPSANISGRPSPTNIETCI-EDLKGKVDYIIGGEKCDVGVESTVIDCTI 190 Query: 186 EKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 +LRPGG+ +E LK I + ++ P++PGM HYAP++++++ Sbjct: 191 -YPPCVLRPGGITLEMLKNIDNKIYIDPAIMAGDNKDLKPKAPGMKYRHYAPKAELKIIR 249 Query: 241 IHVNPREALIR------------FGNVPIKNIENAII---SLNLSKTGKLKEAAFNLFNY 285 + I+ G + + ++L L+ A NLF+ Sbjct: 250 GDLKNSVDKIKKLTDEYESQGKNVGIMATDETREFYVNGQVISLGGRENLETIARNLFSV 309 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ D I + G+GIAI NRL+++A Sbjct: 310 LRSFDSKNVDIILSETFEEKGIGIAIMNRLKKSAG 344 >gi|239624950|ref|ZP_04667981.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239521336|gb|EEQ61202.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 380 Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats. Identities = 100/338 (29%), Positives = 153/338 (45%), Gaps = 28/338 (8%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 L +A L G +A PTETVYGL ++ + A R++Y K RP+ NPLI H+S + Sbjct: 43 DEELAEAAAVLKGGGLVAFPTETVYGLGGNALDEDAARKIYAAKGRPSDNPLIAHISCAA 102 Query: 69 MVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-K 126 + P + L + FWPGPLT++ ++ + +T L T R+P + Sbjct: 103 ELAPLVREIPEAGRKLMEAFWPGPLTMIFP--KSSKVPYGTTGGLDTVAVRMPDDPVASR 160 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LI G P+A PSAN SG+ S T H+ + I +IIDGG IG+ESTIV+V Sbjct: 161 LIALAGVPVAAPSANTSGRPSPTTADHVW-QDMNGRIDMIIDGGPVGIGVESTIVDVSSP 219 Query: 187 KKVRILRPGGLEIETLKRAIS-----VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241 +LRPG + +E L+ + + V E P++PGM HYAP++++ L Sbjct: 220 VP-SVLRPGAITMEMLREVLGEVAVDPAILGPVKEDVKPKAPGMKYRHYAPKAELTLVET 278 Query: 242 HVNPREALIRFGNVPIKNI-----------------ENAIISLNLSKTGKLKEAAFNLFN 284 + + + + + ++ + A NL+ Sbjct: 279 TGPVGRMVEKVKELAHEKLVQGCQVGIICTDESRSCYAEGTVRSIGARESQESVAHNLYA 338 Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 ++ DD I S LG AI NRL +AA + Sbjct: 339 VLREFDDLKVEYIFSESFSEDHLGQAIMNRLSKAAGYK 376 >gi|150395706|ref|YP_001326173.1| Sua5/YciO/YrdC/YwlC family protein [Sinorhizobium medicae WSM419] gi|150027221|gb|ABR59338.1| Sua5/YciO/YrdC/YwlC family protein [Sinorhizobium medicae WSM419] Length = 324 Score = 346 bits (889), Expect = 2e-93, Method: Composition-based stats. Identities = 158/319 (49%), Positives = 210/319 (65%), Gaps = 2/319 (0%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 I A+ AC L P+AIPTETVYGLA D+ AI R+YE+K RP NPLICHV Sbjct: 8 RIEPERAIETACAVLSDAEPVAIPTETVYGLAADATTSDAISRIYEMKGRPRFNPLICHV 67 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 SD++M + H + DPLS LA+ FWPGPLTL+L + +H L++A L T R+P GF+ Sbjct: 68 SDLAMAEAHVTFDPLSRRLAEAFWPGPLTLILPQRHESTVHTLASAGLDTLGIRMPDGFS 127 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 +++I +G PLA PSAN SG+IS T+ H+ + + LI+D G + IGLESTIV V Sbjct: 128 RRVIARFGRPLAAPSANTSGKISPTSAAHVQGD-LGPRLKLILDAGPAAIGLESTIVKV- 185 Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244 +R+LRPGGL+ ++ + +E +T ++PGML SHYAPR+ VR+ A V Sbjct: 186 DNGALRLLRPGGLDAAEIEALTGLAIERPETAGATIEAPGMLASHYAPRAAVRINADDVR 245 Query: 245 PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPN 304 EALIRFG + +A I ++LS TG L+EAA NLF+YMK AD SGA++IAF IP+ Sbjct: 246 RGEALIRFGGKALPGEGDAAIVMDLSPTGSLREAAANLFDYMKKADVSGAATIAFGPIPS 305 Query: 305 HGLGIAINNRLERAAAPRN 323 GLG AI +RL+RAAAPR+ Sbjct: 306 EGLGEAIIDRLQRAAAPRS 324 >gi|77464318|ref|YP_353822.1| translation factor SUA5 [Rhodobacter sphaeroides 2.4.1] gi|77388736|gb|ABA79921.1| translation factor SUA5 [Rhodobacter sphaeroides 2.4.1] Length = 312 Score = 346 bits (889), Expect = 2e-93, Method: Composition-based stats. Identities = 135/315 (42%), Positives = 184/315 (58%), Gaps = 15/315 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A L AG +A+PTETVYGLA D+R+ A+ R++E K RP NPLI H+ D+ Sbjct: 11 AEGIAEAARLLAAGGLVALPTETVYGLAGDARDDRAVARIFEAKGRPQFNPLIVHLPDLE 70 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 +++A D +L LA+ FWPGPLTLVL L T + PL +A L T RVP ++L Sbjct: 71 AARRYARFDDEALRLAEAFWPGPLTLVLPLGDT-PVSPLVSAGLSTVAIRVPAHPLAQQL 129 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + +G PLA PSAN SG++S T +H+L + I ++DGG +G+ESTI + + Sbjct: 130 LRAFGGPLAAPSANPSGRVSPTRPEHVL-DGLSGRIEAVLDGGTCGVGVESTI--LAPGE 186 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 +LRPGGL E L+ + L P +PG L SHYAP + VRL A P E Sbjct: 187 PPLLLRPGGLPAEALEECLGRPL-VAGGSADRPSAPGQLASHYAPEAPVRLGATEARPGE 245 Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307 + I FG + NLS +G L EAA NLF++++ AD G IA + +P GL Sbjct: 246 SWIGFGKLGGPQ--------NLSPSGDLVEAAANLFHFLREADREG-RPIAVAPVPERGL 296 Query: 308 GIAINNRLERAAAPR 322 G AIN+RL RAAAPR Sbjct: 297 GRAINDRLRRAAAPR 311 >gi|331002522|ref|ZP_08326040.1| hypothetical protein HMPREF0491_00902 [Lachnospiraceae oral taxon 107 str. F0167] gi|330410338|gb|EGG89772.1| hypothetical protein HMPREF0491_00902 [Lachnospiraceae oral taxon 107 str. F0167] Length = 366 Score = 346 bits (888), Expect = 3e-93, Method: Composition-based stats. Identities = 106/346 (30%), Positives = 172/346 (49%), Gaps = 34/346 (9%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 + ++ +++A + + +G +A PTETVYGL ++ A +++Y K RP+ NPLI H Sbjct: 17 CKLYENADIKEAADIIRSGGLVAFPTETVYGLGANALMSEAAKKIYAAKGRPSDNPLIVH 76 Query: 64 VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC- 121 +S V A + + LA+ FWPGP+T+VL S I ++ L T R+P Sbjct: 77 ISKTEDVNNIAREIPEIFYKLAECFWPGPMTVVLKKRSI--IPDDTSGGLDTVAVRLPDN 134 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 + LIE P+A PSAN SG+ S T H+ + I +IIDGG IG+ESTIV Sbjct: 135 NIARALIEVSKVPIAAPSANTSGRPSPTRASHVF-DDMDGRIDMIIDGGTVGIGVESTIV 193 Query: 182 NVQCEKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQV 236 ++ + +LRPG + E L+ I +E+ + P++PGM HYAP++ + Sbjct: 194 DLTGDIP-TLLRPGAVTFEMLREVCTEVDIDPAIEHLLASGEAPKAPGMKYKHYAPKADM 252 Query: 237 RLRAIHVNPREALIRFGNVPIKNIENAIIS----------------------LNLSKTGK 274 ++ + ++ + I+ AI++ L+L Sbjct: 253 KMLKGNEAAVLDYLK-KEISKSEIKTAILTVDEHRAVLEKIIEDNKKENIKLLSLGSLKD 311 Query: 275 LKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 +K A NLF+ ++ D+ G S+I S G+G AI NRL++A+ Sbjct: 312 MKTVAHNLFDVLRKCDELGVSTILSESFDESGIGRAIMNRLKKASG 357 >gi|90425777|ref|YP_534147.1| Sua5/YciO/YrdC/YwlC [Rhodopseudomonas palustris BisB18] gi|90107791|gb|ABD89828.1| translation factor SUA5 [Rhodopseudomonas palustris BisB18] Length = 327 Score = 346 bits (888), Expect = 3e-93, Method: Composition-based stats. Identities = 138/317 (43%), Positives = 185/317 (58%), Gaps = 5/317 (1%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + KA + L G +A PTETVYGL D+ N AI RLY+ K RP+ NPLI HV+D++ Sbjct: 14 EDGVAKAVKCLRDGGLVAFPTETVYGLGCDAGNAAAIARLYQAKGRPSFNPLIAHVADLA 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 ++ D + LA FWPGPLTLV+ + L+TA L T RVP + + Sbjct: 74 AAERIGRFDGDARRLAASFWPGPLTLVVPKAEHCPVADLATAGLDTVAIRVPLHPVAQAI 133 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + +G + PSANRSG +S T H+ + I LI++GG +G+ESTIV Sbjct: 134 LRGFGGAVVAPSANRSGHVSPTTAAHV-HVDLDGRIQLIVNGGPVSVGVESTIVACF--D 190 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETST-PQSPGMLKSHYAPRSQVRLRAIHVNPR 246 + +LRPGGL E ++ + L V T P +PGML SHYAPR++VRL A HV P Sbjct: 191 QPVLLRPGGLPREKIEAVLGRALAQPVAADPTRPLAPGMLASHYAPRTKVRLEATHVEPG 250 Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306 EAL+ FG + ++ + +NLS+ G L EAA NLF Y++ D GAS IA +P HG Sbjct: 251 EALLAFGAAALPGVDATTVVMNLSEQGDLAEAAANLFGYLRALDAKGASGIAVMPVPRHG 310 Query: 307 LGIAINNRLERAAAPRN 323 LG AIN+RL RAA PR Sbjct: 311 LGEAINDRLRRAALPRE 327 >gi|332559208|ref|ZP_08413530.1| translation factor SUA5 [Rhodobacter sphaeroides WS8N] gi|332276920|gb|EGJ22235.1| translation factor SUA5 [Rhodobacter sphaeroides WS8N] Length = 312 Score = 346 bits (888), Expect = 4e-93, Method: Composition-based stats. Identities = 134/315 (42%), Positives = 184/315 (58%), Gaps = 15/315 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A L AG +A+PTETVYGLA D+R+ A+ R++E K RP NPLI H+ D+ Sbjct: 11 AEGIAEAARLLAAGGLVALPTETVYGLAGDARDDRAVARIFEAKGRPQFNPLIVHLPDLE 70 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 +++A D +L LA+ FWPGPLTLVL L T + PL +A L T R+P ++L Sbjct: 71 AARRYARFDDEALRLAEAFWPGPLTLVLPLGDT-PVSPLVSAGLSTVAIRMPAHPLAQQL 129 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + +G PLA PSAN SG++S T +H+L + I ++DGG +G+ESTI + + Sbjct: 130 LRAFGGPLAAPSANPSGRVSPTRPEHVL-DGLSGRIEAVLDGGTCGVGVESTI--LAPGE 186 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 +LRPGGL E L+ + L P +PG L SHYAP + VRL A P E Sbjct: 187 PPLLLRPGGLPAEALEECLGRPL-VAGGSADRPSAPGQLASHYAPEAPVRLGATEARPGE 245 Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307 + I FG + NLS +G L EAA NLF++++ AD G IA + +P GL Sbjct: 246 SWIGFGKLGGP--------RNLSPSGDLVEAAANLFHFLREADREG-RPIAVAPVPERGL 296 Query: 308 GIAINNRLERAAAPR 322 G AIN+RL RAAAPR Sbjct: 297 GRAINDRLRRAAAPR 311 >gi|295707225|ref|YP_003600300.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus megaterium DSM 319] gi|294804884|gb|ADF41950.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus megaterium DSM 319] Length = 346 Score = 345 bits (887), Expect = 4e-93, Method: Composition-based stats. Identities = 92/326 (28%), Positives = 160/326 (49%), Gaps = 19/326 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 + +A + L +A PTETVYGL D+ + A+ +++ K RP+ NPLI H+ D + Sbjct: 20 QIEEAADLLRNHEVVAFPTETVYGLGGDATSDKAVDKIFAAKGRPSDNPLIVHIGDKEQL 79 Query: 71 KKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + + + FWPGPLT++L + TA L + R+P L+ Sbjct: 80 HTFVESIPSKAEKVIDAFWPGPLTVILP--KKDRVSDKVTAGLNSIAVRMPSHPVALALL 137 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 + P+A PSAN SG+ S T H+++ + I ++DGG + +G+EST+++ E Sbjct: 138 KKVALPIAAPSANLSGKPSPTLAHHVMND-LEGRISGVVDGGATGVGVESTVLDCTEEIP 196 Query: 189 VRILRPGGLEIETLKRAIS-VELEYC-VDETSTPQSPGMLKSHYAPRSQVRL-------- 238 + ILRPGG+ + L+ I V+++ + + P+SPGM +HYAP + + + Sbjct: 197 I-ILRPGGITQKELENVIGPVKVDRALLSDKEAPKSPGMKYTHYAPDAPLVIVDGSSDFF 255 Query: 239 RAIHVNPREALIRFGNVPIKNIEN---AIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 ++I ++ R G + E+ A + L+ A +L+ ++ ++ Sbjct: 256 QSIIDRYKDQGKRVGVLTTSEHEDAYKADAVITCGSRSNLETVASHLYESLRSFNEGDVD 315 Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321 I S G+G A+ NRL +AA Sbjct: 316 VIVSESFSEEGVGHAVMNRLMKAAGH 341 >gi|254459968|ref|ZP_05073384.1| Sua5/YciO/YrdC family protein [Rhodobacterales bacterium HTCC2083] gi|206676557|gb|EDZ41044.1| Sua5/YciO/YrdC family protein [Rhodobacteraceae bacterium HTCC2083] Length = 310 Score = 345 bits (887), Expect = 4e-93, Method: Composition-based stats. Identities = 122/314 (38%), Positives = 172/314 (54%), Gaps = 14/314 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + + +A L G +A PTETVYGL D+R+ A+ ++Y K RP+ NPLI HV+D Sbjct: 10 SDIARAAGLLSDGKLVAFPTETVYGLGADARDGEAVAKIYAAKGRPSFNPLIVHVADADA 69 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLI 128 + + LA FWPGP++LVL L + L TA L++ RVP + L+ Sbjct: 70 ARTFGVWSDTAQRLADAFWPGPVSLVLPLRKHAGLSDLVTAGLESVALRVPAGHLAQDLL 129 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 +G P+A PSAN SG+IS T +H+ + + +I ++DGG +G+ESTIV + Sbjct: 130 NAFGGPIAAPSANPSGRISPTTPEHVF-AGLDGKIAAVLDGGACAVGVESTIVGLTDHPT 188 Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248 + LR GG ET++ + EL V +PG L SHYAP + VRL E Sbjct: 189 L--LRAGGASRETIEERLCFELATPVSGE--ISAPGQLASHYAPNASVRLNVEDWQSGEK 244 Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLG 308 + FG + LNLS++G L EAA NLF ++ + D + IA ++IP GLG Sbjct: 245 TLGFGKMACD--------LNLSESGNLIEAAANLFGHLHLLDAMEGTRIAVATIPETGLG 296 Query: 309 IAINNRLERAAAPR 322 AIN+RL RAAAPR Sbjct: 297 AAINDRLRRAAAPR 310 >gi|14521794|ref|NP_127270.1| sua5 related protein [Pyrococcus abyssi GE5] gi|5459014|emb|CAB50500.1| Putative translation factor, SUA5 related protein [Pyrococcus abyssi GE5] Length = 340 Score = 345 bits (887), Expect = 4e-93, Method: Composition-based stats. Identities = 111/333 (33%), Positives = 173/333 (51%), Gaps = 24/333 (7%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 + +R A F+ G +A PTETVYGL ++ + A++R++E K RPA NPLI H++ Sbjct: 11 IEEWKIRIAAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIAS 70 Query: 67 ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 ++ A + + LAK FWPGPLTLVL + + + T L T R+P Sbjct: 71 FEQLEVLAKEIPEEAEMLAKRFWPGPLTLVLP--KSEVVPRVITGGLDTVAVRMPAHEIA 128 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 KLIE P+A PSAN SG+ S T+ H+ + +I IIDGG ++IG+EST++++ Sbjct: 129 LKLIELSERPIAAPSANISGKPSPTSAHHV-AEDFYGKIECIIDGGETRIGVESTVIDLT 187 Query: 185 CEKKVRILRPGGLEIETLKRAIS-VELEYCV--DETSTPQSPGMLKSHYAPRSQV----- 236 V +LRPGGL +E +++ I + + V T ++PGM HYAP ++V Sbjct: 188 EWPPV-LLRPGGLPLEEIEKVIGEIRIHPAVYGKSVDTAKAPGMKYRHYAPSAEVIVVEG 246 Query: 237 -------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIA 289 ++ + +E + G + +A L T ++E A NLF ++ Sbjct: 247 PRDKVRRKIEELIAKFKEEGKKVGVIG-SGSYDADEVFYLGDT--VEEIARNLFKALRHM 303 Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 D +G I + GLG+A+ NRL +A+ R Sbjct: 304 DRTGVDVILAEGVEEKGLGLAVMNRLRKASGYR 336 >gi|260431590|ref|ZP_05785561.1| Sua5/YciO/YrdC family protein [Silicibacter lacuscaerulensis ITI-1157] gi|260415418|gb|EEX08677.1| Sua5/YciO/YrdC family protein [Silicibacter lacuscaerulensis ITI-1157] Length = 316 Score = 345 bits (887), Expect = 4e-93, Method: Composition-based stats. Identities = 133/309 (43%), Positives = 168/309 (54%), Gaps = 14/309 (4%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 E L GL +A PTETVYGL D+RN A+ +Y K RP+ NPLI HV+ + ++H Sbjct: 21 ELLRQGLLVAFPTETVYGLGADARNGEAVAAIYAAKGRPSFNPLIAHVASVEAAQRHVEW 80 Query: 77 DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPL 135 + LA FWPGPLTLVL L + + L TA L T RVP + L+ P+ Sbjct: 81 SDQAQQLADAFWPGPLTLVLPLRAGHGVSSLVTAGLDTLAVRVPAHPTAQALLRAVDGPV 140 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 A PSAN SG+IS T H+ + I I+D G +GLESTIV + +LRPG Sbjct: 141 AAPSANPSGRISPTTAAHV-REGLDGRIAAILDDGPCAVGLESTIVGL--AGTPALLRPG 197 Query: 196 GLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNV 255 G+ E ++ + +L + +PG L+SHYAP + VRL A E L+ FG V Sbjct: 198 GVAAEQIEAVLGTKLSHH-KPGDLLTAPGQLQSHYAPDAPVRLNAEQRRGDEVLLGFGPV 256 Query: 256 PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRL 315 LNLS+ G L EAA NLF + D SG IA S IP HGLG AIN+RL Sbjct: 257 ACD--------LNLSERGDLLEAAANLFASLHELDKSG-RPIAVSPIPGHGLGAAINDRL 307 Query: 316 ERAAAPRNQ 324 RAAAPRN Sbjct: 308 RRAAAPRNS 316 >gi|20806674|ref|NP_621845.1| putative translation factor (Sua5) [Thermoanaerobacter tengcongensis MB4] gi|20515125|gb|AAM23449.1| putative translation factor (Sua5) [Thermoanaerobacter tengcongensis MB4] Length = 355 Score = 345 bits (887), Expect = 5e-93, Method: Composition-based stats. Identities = 106/337 (31%), Positives = 168/337 (49%), Gaps = 26/337 (7%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + A E + G +A PTETVYG+ +S + A++R++ K RP NPLI H++ + Sbjct: 16 ELIDYAAEVIKKGGLVAFPTETVYGIGANSFDEEAVKRIFIAKGRPQDNPLILHIALMDQ 75 Query: 70 VKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 V + A + LA FWPGPLT+VL + + ++TA + T R+P L Sbjct: 76 VYELAAEFPEKAKKLAHRFWPGPLTVVL--KKSDKVPYVNTAGMNTVAIRMPSNPIAHLL 133 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I+ G P++ PSAN SG+ S T+ H++ + ++ +IIDGG +GLEST+V++ E Sbjct: 134 IKRAGVPISAPSANVSGKPSPTDASHVI-EDLYGKVDVIIDGGKCDVGLESTVVDLTEEV 192 Query: 188 KVRILRPGGLEIETLKRAIS-VELEYCV----DETSTPQSPGMLKSHYAPRSQVRLRAIH 242 V ILRPG + +E LK + V+L+ + DE P+SPGM HY+P+++V + Sbjct: 193 PV-ILRPGAVTLEMLKEVLGEVKLDPSLLTRPDENIKPKSPGMKYKHYSPKAEVYIVKGP 251 Query: 243 VNPREALIR---------------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMK 287 ++ I+ V + + K + A NLF ++ Sbjct: 252 LDKVVKKIQQLAKNQLKNGKKVGIMATVQTSTQYKEGEIIVVGDRDKPETIAKNLFETLR 311 Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQ 324 D G + S +G+AI NRLE+AA + Sbjct: 312 EFDRRGVEVVFAESFNYDDIGLAIMNRLEKAAGYKEI 348 >gi|328544911|ref|YP_004305020.1| translation factor sua5 protein [polymorphum gilvum SL003B-26A1] gi|326414653|gb|ADZ71716.1| Probable translation factor sua5 protein [Polymorphum gilvum SL003B-26A1] Length = 332 Score = 345 bits (886), Expect = 5e-93, Method: Composition-based stats. Identities = 137/313 (43%), Positives = 183/313 (58%), Gaps = 4/313 (1%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 CE L AG + +PTETVYGLA D+ N A +Y K RP NPLI H+ + ++ Sbjct: 20 AAVCEALLAGNLVGVPTETVYGLAADATNGRACAAIYAAKGRPRFNPLISHLESLDAARR 79 Query: 73 HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI-ETY 131 H D + LA+ FWPGPLTLV+ + + I L TA L T RVP + + E Sbjct: 80 HGVFDARAHALAQAFWPGPLTLVVPKAAGSPICDLVTAGLDTVALRVPAAPVMRFLAERT 139 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 G PLA PSAN SG+IS T ++ + + +ID G IG+ESTIV + + V + Sbjct: 140 GRPLAAPSANLSGRISATTADDVIRD-LGDAVAFVIDAGPCPIGIESTIVGLAGAEPV-L 197 Query: 192 LRPGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALI 250 LRPGG+ E ++R + L ++ PQ+PGML SHYAP + VRL A V EAL+ Sbjct: 198 LRPGGIAREAIERVLGRPLAAAQTEQADAPQAPGMLTSHYAPNATVRLAATEVASGEALL 257 Query: 251 RFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIA 310 FG P +E A+ ++NLS TG L EAA LF+ ++ D SGA++I IP+ GLG A Sbjct: 258 AFGPTPPAGVERAVATVNLSPTGDLAEAAATLFSALRRLDASGAATICVQPIPDGGLGEA 317 Query: 311 INNRLERAAAPRN 323 IN+RL RAAAPR+ Sbjct: 318 INDRLRRAAAPRH 330 >gi|114767661|ref|ZP_01446371.1| Sua5/YciO/YrdC family protein [Pelagibaca bermudensis HTCC2601] gi|114540329|gb|EAU43423.1| Sua5/YciO/YrdC family protein [Roseovarius sp. HTCC2601] Length = 318 Score = 345 bits (886), Expect = 5e-93, Method: Composition-based stats. Identities = 132/317 (41%), Positives = 180/317 (56%), Gaps = 11/317 (3%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L + L +G +A PTETVYGL D+ N A+ R+YE K RP+ NPLI H++D+ Sbjct: 12 DPEGLARGAGILRSGGLLAFPTETVYGLGGDACNDRAVARIYEAKGRPSFNPLIVHLADL 71 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126 VK L+ A FWPGPLT+VL L + + L TA L + R+P + Sbjct: 72 DAVKALVVWSDLAEAAAAAFWPGPLTMVLPLRESAKVSKLVTAGLDSLAVRMPANPVARA 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+ +G P+A PSANRSG+IS T +H+L ++ I ++DGG +GLESTI+ + Sbjct: 132 LLAEFGGPVAAPSANRSGRISPTRAEHVL-DTLDGRIEGVLDGGRCDVGLESTILGL--A 188 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246 K +LRPG + I+ L + + + + +PG L SHYAPR++VRL A Sbjct: 189 GKPTLLRPGRIGIDALSQVLGRPVME-RKDREQISAPGQLSSHYAPRARVRLNAAEWQEG 247 Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306 EA + FG LNLS +G L EAA NLF Y+ D GA +IA +P+ G Sbjct: 248 EARLGFGQT------EGDCDLNLSPSGDLVEAAANLFEYLHRLDADGAETIAVMPVPHVG 301 Query: 307 LGIAINNRLERAAAPRN 323 LGIAIN+RL RAAAPR+ Sbjct: 302 LGIAINDRLSRAAAPRD 318 >gi|317130767|ref|YP_004097049.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cellulosilyticus DSM 2522] gi|315475715|gb|ADU32318.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cellulosilyticus DSM 2522] Length = 350 Score = 345 bits (886), Expect = 5e-93, Method: Composition-based stats. Identities = 111/325 (34%), Positives = 165/325 (50%), Gaps = 19/325 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 ++ A L + +A PTETVYGL ++ + AI R+++ K RP+ NPLI H+S+ ++ Sbjct: 24 IQCAATQLASNEVVAFPTETVYGLGGNALSDQAIERIFKAKGRPSDNPLIVHISNKKQLQ 83 Query: 72 KHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + + + L FWPGPLT+VL+ + TA L T R+P LIE Sbjct: 84 HYVKHIPNSARKLIDAFWPGPLTIVLEHNKK--LSTRVTAQLSTVAVRMPDHPVALALIE 141 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 PLA PSAN SG+ S T H+ + +I IIDGG + +G+EST+V+ E V Sbjct: 142 AANVPLAAPSANTSGKPSPTTADHV-RKDLAGKISTIIDGGTTGVGVESTVVDCTSE-TV 199 Query: 190 RILRPGGLEIETLKRAIS-VELEYC-VDETSTPQSPGMLKSHYAPRSQVRL--------R 239 +LRPGG+ E L+ + VE++ V TP+SPGM +HYAP + ++L R Sbjct: 200 MLLRPGGISKEALEEIVGVVEVDPALVAADHTPKSPGMKYTHYAPDAPLQLIDGSTDFFR 259 Query: 240 AIHVNPREALIRFGNVPI---KNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296 I + + G + K + A + L K L A L++ ++ D + Sbjct: 260 KIVEDAINNGKKVGVLVTEENKGLTRANQEVILGKRSDLSTVAQTLYSSLRSFDKNVVDI 319 Query: 297 IAFSSIPNHGLGIAINNRLERAAAP 321 I P GLG AI NRL++AA Sbjct: 320 IFTEVFPETGLGSAIMNRLKKAAGG 344 >gi|78044541|ref|YP_361354.1| Sua5/YciO/YrdC/YwlC family protein [Carboxydothermus hydrogenoformans Z-2901] gi|77996656|gb|ABB15555.1| Sua5/YciO/YrdC/YwlC family protein [Carboxydothermus hydrogenoformans Z-2901] Length = 342 Score = 345 bits (886), Expect = 5e-93, Method: Composition-based stats. Identities = 111/343 (32%), Positives = 167/343 (48%), Gaps = 23/343 (6%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 +I + N + +A E++ G +A PTETVYGL D+ NP A+ +++ K RP Sbjct: 4 RIFKVNPENPEQTIINEAAEYIKKGELVAFPTETVYGLGADAFNPAAVLKIFAAKGRPQD 63 Query: 58 NPLICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 NPLI H++ + + A VD + L + FWPGPLT+VL D+ + +A L T Sbjct: 64 NPLIVHIARHEDIYRVAARVDVRAQKLMEKFWPGPLTIVLPRRE--DLPAVVSAGLPTVA 121 Query: 117 FRVPCGFTK-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R+P LIE P+A PSANRSG+ S T+ +H+L + IP+++ GG ++G Sbjct: 122 VRLPDHPVAVMLIEAAQTPIAAPSANRSGRPSPTSYEHVL-DDLSGIIPVVLAGGNCRVG 180 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQ 235 +EST++++ V +LRPGG+ E L+ I + + P++PGM HYAPR+ Sbjct: 181 VESTVLDLTVTPPV-VLRPGGITPEMLEEVIGEVRYFNAKDLDAPKAPGMKYPHYAPRAP 239 Query: 236 VRLRAI-------HVNPREALIRFGNVPIKNIENAIIS------LNLSKTGKLKEAAFNL 282 V L A G + K + L L E NL Sbjct: 240 VYLVKTPEEILKRARELGAAGKNVGLLISKETKEQFFPNYSQNLLVLGSRNNPSELLHNL 299 Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325 + ++ D I P GL +A+ NRL++AAA R S Sbjct: 300 YEKLREFDRRDVELILAEVYPEEGLYLALMNRLKKAAAGRYLS 342 >gi|160881865|ref|YP_001560833.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium phytofermentans ISDg] gi|160430531|gb|ABX44094.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium phytofermentans ISDg] Length = 352 Score = 345 bits (886), Expect = 6e-93, Method: Composition-based stats. Identities = 117/337 (34%), Positives = 171/337 (50%), Gaps = 27/337 (8%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 +S ++A E L G +A PTETVYGL D+ + TA RR+YE K RP+ NPLI H+++I Sbjct: 14 NSEDFKEAVELLKEGQLVAFPTETVYGLGGDALDKTAARRIYEAKGRPSDNPLIVHIANI 73 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125 +K+ A V + LA FWPGPLT++L + + +T L T R+P + Sbjct: 74 EALKELAVEVPEEAYRLADDFWPGPLTMIL--KKSDLVPLETTGGLDTVAIRMPSDEIAR 131 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +LI+ G LA PSAN+SG+ S T +H++ + + +IIDGG S IGLESTIV++ Sbjct: 132 RLIKESGLYLAAPSANKSGRPSTTKAEHVI-EDLDGCVSMIIDGGSSTIGLESTIVDLTG 190 Query: 186 EKKVRILRPGGLEIETLKRAIS---VELEYCVDETSTP---QSPGMLKSHYAPRSQVRLR 239 + V ILRPG + E L + I + E S P ++PGM HYAP+ Q+ + Sbjct: 191 DNPV-ILRPGFITREMLNQCIGGTEYDKAVLKKEKSDPVVAKAPGMKYRHYAPKGQLTIY 249 Query: 240 AIHVNPREALIR---------------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFN 284 N I KN+ + ++ + A +LF Sbjct: 250 EGDTNQVIKAINEAAKQKTEEGFHVGILATEETKNLYSYGDVKSIGTRKNEETIAAHLFE 309 Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 ++ D S A+ I S ++ LG AI NRL +AA Sbjct: 310 CLREFDTSNAAYIFSESFEDNYLGQAIMNRLLKAAGY 346 >gi|288959229|ref|YP_003449570.1| translation factor [Azospirillum sp. B510] gi|288911537|dbj|BAI73026.1| translation factor [Azospirillum sp. B510] Length = 331 Score = 345 bits (885), Expect = 7e-93, Method: Composition-based stats. Identities = 128/318 (40%), Positives = 185/318 (58%), Gaps = 6/318 (1%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 T + L++A E L AG +A PTETVYGL D+ + A+ ++ K RP NPLI H+ D Sbjct: 19 TTAAGLKRAGELLRAGRLVAFPTETVYGLGADATDDRAVAAIFAAKGRPQFNPLIAHLPD 78 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125 ++ + D +L LA FWPGPLT+V+ + + + L +A L + RVP + Sbjct: 79 LASAQSWGLFDERALDLAAQFWPGPLTMVVPRPANSALSLLVSAGLDSIAIRVPGHPVAQ 138 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 ++ G P+A PSANRSG +S T H+L S+ + + I+ GG +GLEST++++ Sbjct: 139 AILRAAGKPIAAPSANRSGAVSPTTPHHVL-ESLGERVDAIVTGGKCMVGLESTVIDLTG 197 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245 + V +LRPG + + ++R I + + + P+SPG L+SHYAP + VRL A Sbjct: 198 PEAV-LLRPGAVLPDEMERLIG-PVRLSAGDPTAPKSPGQLESHYAPDAAVRLNASSAAE 255 Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305 EA + FG P + + LNLS G L EAA NLF++++ D SGA IA IP Sbjct: 256 DEAFLTFG--PDRFVFGGATRLNLSLEGDLNEAAANLFSHLRSLDQSGAKRIAVMPIPEL 313 Query: 306 GLGIAINNRLERAAAPRN 323 GLG+AIN+RL RAAAPR Sbjct: 314 GLGLAINDRLRRAAAPRG 331 >gi|291526379|emb|CBK91966.1| Sua5/YciO/YrdC/YwlC family protein [Eubacterium rectale DSM 17629] Length = 502 Score = 345 bits (885), Expect = 7e-93, Method: Composition-based stats. Identities = 103/346 (29%), Positives = 170/346 (49%), Gaps = 30/346 (8%) Query: 2 QIMSIT----DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 +I+ I D +++A + + AG +A PTETVYGL D+ +P A +++Y K RP+ Sbjct: 4 KIIKIDQDNLDHKLMQEAGDLIAAGELVAFPTETVYGLGGDALDPEASKKIYSAKGRPSD 63 Query: 58 NPLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 NPLI H+SD S +++ A V + L+ FWPGPLT++++ + +T + T Sbjct: 64 NPLIVHISDFSDLERIAKTVPEDARKLSDAFWPGPLTMIVE--KGDAVPYATTGGMDTVA 121 Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R+P LI G +A PSAN SG+ S T H+ + + +I +IIDGG IG Sbjct: 122 VRMPNHPIALDLIRRSGCLIAAPSANTSGRPSPTEAAHV-AEDLSGKIAMIIDGGPVGIG 180 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL-----EYCVDETSTPQSPGMLKSHY 230 +ESTI+++ + + +LRPG + + L + + E+ D+T P++PGM HY Sbjct: 181 IESTIIDLTEDTPM-VLRPGYITPQMLSKVLGKEVVIDPGIIAADDTRKPKAPGMKYKHY 239 Query: 231 APRSQV---------------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKL 275 AP++ + L A H + + + K +A + L++ Sbjct: 240 APKADMVIVDGTRKHVIAKINELVASHRDDGKKIAVIATEETKQFYDADVVLSMGSRADE 299 Query: 276 KEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 A L+ ++ D+ I S +G AI NR+ +AA Sbjct: 300 DSIAHELYRILRDCDELDVDVIFSESFSTPRIGQAIMNRMLKAAGH 345 >gi|238922539|ref|YP_002936052.1| putative translation factor (SUA5) [Eubacterium rectale ATCC 33656] gi|238874211|gb|ACR73918.1| putative translation factor (SUA5) [Eubacterium rectale ATCC 33656] Length = 502 Score = 345 bits (885), Expect = 7e-93, Method: Composition-based stats. Identities = 103/346 (29%), Positives = 170/346 (49%), Gaps = 30/346 (8%) Query: 2 QIMSIT----DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 +I+ I D +++A + + AG +A PTETVYGL D+ +P A +++Y K RP+ Sbjct: 4 KIIKIDQDNLDHKLMQEAGDLIAAGELVAFPTETVYGLGGDALDPEASKKIYSAKGRPSD 63 Query: 58 NPLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 NPLI H+SD S +++ A V + L+ FWPGPLT++++ + +T + T Sbjct: 64 NPLIVHISDFSDLERIAKTVPEDARKLSDAFWPGPLTMIVE--KGDAVPYATTGGMDTVA 121 Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R+P LI G +A PSAN SG+ S T H+ + + +I +IIDGG IG Sbjct: 122 VRMPNHPIALDLIRRSGCLIAAPSANTSGRPSPTEAAHV-AEDLSGKIAMIIDGGPVGIG 180 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL-----EYCVDETSTPQSPGMLKSHY 230 +ESTI+++ + + +LRPG + + L + + E+ D+T P++PGM HY Sbjct: 181 IESTIIDLTEDTPM-VLRPGYITPQMLSKVLGKEVIIDPGIIAADDTRKPKAPGMKYKHY 239 Query: 231 APRSQV---------------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKL 275 AP++ + L A H + + + K +A + L++ Sbjct: 240 APKADMVIVDGTRKHVIAKINELVASHRDDGKKIAVIATEETKQFYDADVVLSMGSRADE 299 Query: 276 KEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 A L+ ++ D+ I S +G AI NR+ +AA Sbjct: 300 DSIAHELYRILRDCDELDVDVIFSESFSTPRIGQAIMNRMLKAAGH 345 >gi|115526373|ref|YP_783284.1| Sua5/YciO/YrdC/YwlC [Rhodopseudomonas palustris BisA53] gi|115520320|gb|ABJ08304.1| translation factor SUA5 [Rhodopseudomonas palustris BisA53] Length = 327 Score = 345 bits (885), Expect = 7e-93, Method: Composition-based stats. Identities = 139/324 (42%), Positives = 190/324 (58%), Gaps = 6/324 (1%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +++S +DS A+ +A L G +A PTETVYGL D+ TA+ RLY+ K RPA NPLI Sbjct: 8 RLLSASDS-AVDRAVACLIDGGLVAFPTETVYGLGADATQATAVARLYQAKGRPAFNPLI 66 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 HV+D++ +K D +L LA+ FWPGPLTLV+ + + L+TA L T R+P Sbjct: 67 AHVADLAAAQKIGRFDQNALRLAQAFWPGPLTLVVQKAAGCPVAELATAGLDTIAIRIPA 126 Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 + ++ G P+ PSANRSG +S T H+ + I LI+DGG +G+ESTI Sbjct: 127 HAVARAILRGLGRPVVAPSANRSGHVSPTTAAHV-RGDLDGRIDLIVDGGPVTVGVESTI 185 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDET-STPQSPGMLKSHYAPRSQVRLR 239 V K +LRPGGL + ++ + L + + P +PGML SHYAPRS+VRL Sbjct: 186 VGCFA--KPVLLRPGGLPRQAIEAVLGEPLASPGEAAGAKPLAPGMLASHYAPRSRVRLD 243 Query: 240 AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF 299 A V P EAL+ FG+ + + A LNLS G L EAA NLF +++ D + IA Sbjct: 244 ATRVEPGEALLAFGSPLPQGADLAATVLNLSARGDLTEAAANLFGHLRALDGASPRGIAV 303 Query: 300 SSIPNHGLGIAINNRLERAAAPRN 323 +P+ GLG AIN+RL RAA PR Sbjct: 304 MPVPHEGLGEAINDRLARAAVPRE 327 >gi|291526824|emb|CBK92410.1| Sua5/YciO/YrdC/YwlC family protein [Eubacterium rectale M104/1] Length = 502 Score = 345 bits (885), Expect = 8e-93, Method: Composition-based stats. Identities = 103/346 (29%), Positives = 170/346 (49%), Gaps = 30/346 (8%) Query: 2 QIMSIT----DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 +I+ I D +++A + + AG +A PTETVYGL D+ +P A +++Y K RP+ Sbjct: 4 KIIKIDQDNLDHKLMQEAGDLIAAGELVAFPTETVYGLGGDALDPEASKKIYSAKGRPSD 63 Query: 58 NPLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 NPLI H+SD S +++ A V + L+ FWPGPLT++++ + +T + T Sbjct: 64 NPLIVHISDFSDLERIAKTVPEDARKLSDAFWPGPLTMIVE--KGDAVPYATTGGMDTVA 121 Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R+P LI G +A PSAN SG+ S T H+ + + +I +IIDGG IG Sbjct: 122 VRMPNHPIALDLIRRSGCLIAAPSANTSGRPSPTEAAHV-AEDLSGKIAMIIDGGPVGIG 180 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL-----EYCVDETSTPQSPGMLKSHY 230 +ESTI+++ + + +LRPG + + L + + E+ D+T P++PGM HY Sbjct: 181 IESTIIDLTEDTPM-VLRPGYITPQMLSKVLGKEVIIDPGIIAADDTRKPKAPGMKYKHY 239 Query: 231 APRSQV---------------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKL 275 AP++ + L A H + + + K +A + L++ Sbjct: 240 APKADMVIVDGTRKHVIAKINELVASHRDDGKKIAVIATEETKQFYDADVVLSMGSRADE 299 Query: 276 KEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 A L+ ++ D+ I S +G AI NR+ +AA Sbjct: 300 DSIAHELYRILRDCDELDVDVIFSESFSTPRIGQAIMNRMLKAAGH 345 >gi|260429406|ref|ZP_05783383.1| Sua5/YciO/YrdC family protein [Citreicella sp. SE45] gi|260420029|gb|EEX13282.1| Sua5/YciO/YrdC family protein [Citreicella sp. SE45] Length = 315 Score = 345 bits (885), Expect = 8e-93, Method: Composition-based stats. Identities = 128/325 (39%), Positives = 180/325 (55%), Gaps = 12/325 (3%) Query: 1 MQIMSIT-DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 M +T D + +A L G +A PTETVYGL ++ + A+ ++E K RP+ NP Sbjct: 1 MATQRLTADPEGIARAATLLRDGQLVAFPTETVYGLGGNALDDRAVAGIFEAKGRPSFNP 60 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 LI H++D+ VK+ L+ A++FWPGPLT+VL + + + L +A L + R+ Sbjct: 61 LIVHLADLDAVKELVQWSDLADVAAQVFWPGPLTMVLPIRAGAKVSKLVSAGLDSLAVRM 120 Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P + L+ G P+A PSANRSG+IS T +H+L ++ I ++DGG +GLES Sbjct: 121 PASPVARTLLRECGCPVAAPSANRSGRISPTRAEHVL-ETLDGRIAAVLDGGPCDVGLES 179 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238 TI+ + K +LRPG + L A+ + D +PG L SHYAP ++VRL Sbjct: 180 TILGLT--GKPTLLRPGRVTAALLSEALGRPVMERRD-RDQISAPGQLASHYAPNARVRL 236 Query: 239 RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIA 298 A + EA + FG LNLS G L EAA NLF Y+ D SGA IA Sbjct: 237 NASEWHEGEARLGFGRT------EGDCDLNLSPAGDLVEAAANLFEYLHRLDSSGAEVIA 290 Query: 299 FSSIPNHGLGIAINNRLERAAAPRN 323 +P+ GLG+AIN+RL RAAAPR Sbjct: 291 VMPVPHVGLGVAINDRLSRAAAPRG 315 >gi|56695212|ref|YP_165560.1| Sua5/YciO/YrdC family protein [Ruegeria pomeroyi DSS-3] gi|56676949|gb|AAV93615.1| Sua5/YciO/YrdC family protein [Ruegeria pomeroyi DSS-3] Length = 316 Score = 344 bits (884), Expect = 9e-93, Method: Composition-based stats. Identities = 130/317 (41%), Positives = 172/317 (54%), Gaps = 14/317 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + + +A E L G +A PTETVYGL D+ N A+ +Y K RP+ NPLI HV+ Sbjct: 12 DPDGIARAAELLRDGRLVAFPTETVYGLGGDATNGQAVAGIYAAKGRPSFNPLIAHVASA 71 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK- 126 ++H + LA FWPGPLTLVL L + I L TA L T RVP T + Sbjct: 72 EAARRHVHWSETAERLATAFWPGPLTLVLPLRANHGISELVTAGLDTLAVRVPAHPTART 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+ T P+A PSAN SG+IS T H+L + + I ++D G +G+ESTIV + Sbjct: 132 LLATLDRPVAAPSANPSGRISPTTADHVL-AGLDGRIAAVLDAGPCGVGVESTIVGLS-- 188 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246 +LRPGGL E ++ + L + +PG L SHYAP+S VRL A + Sbjct: 189 GTPILLRPGGLPTEEIEALLGQPLARH-QQGDNISAPGQLLSHYAPQSTVRLNARAPSDG 247 Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306 E + FG + NLS +G L EAA NLF + D +G IA + IP G Sbjct: 248 EVFLGFGPMDCDE--------NLSPSGNLTEAAANLFAALHRLDTTG-KPIAIAPIPERG 298 Query: 307 LGIAINNRLERAAAPRN 323 LG+AIN+RL RAAAPR+ Sbjct: 299 LGLAINDRLRRAAAPRD 315 >gi|219670827|ref|YP_002461262.1| Sua5/YciO/YrdC/YwlC family protein [Desulfitobacterium hafniense DCB-2] gi|219541087|gb|ACL22826.1| Sua5/YciO/YrdC/YwlC family protein [Desulfitobacterium hafniense DCB-2] Length = 348 Score = 344 bits (884), Expect = 1e-92, Method: Composition-based stats. Identities = 113/348 (32%), Positives = 175/348 (50%), Gaps = 30/348 (8%) Query: 1 MQIMSIT------DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR 54 MQ +T + +++A + + G +A+PTETVYGL ++ + A + ++++K R Sbjct: 1 MQTKRVTIDAQHPQTEWIKEAAQLIREGQLVALPTETVYGLGANAMDAHACQEIFKVKGR 60 Query: 55 PAMNPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK 113 P NPLI H+SD++MVK+ P + A FWPGPLTLVL+ T + + + L Sbjct: 61 PQDNPLIVHISDLAMVKRLVEEWTPQAALCADKFWPGPLTLVLE--KTAFVPDVVSGGLG 118 Query: 114 TACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172 T R+P +LI+ G P+A PSAN SG+ S T H+ + +IPLI+DGG Sbjct: 119 TVAIRMPQHPVALELIKEAGVPIAAPSANLSGKPSPTRGIHVWKD-LKGKIPLILDGGPC 177 Query: 173 KIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAP 232 +G+EST++++ E ILRPGG+ E L+ + P++PGM HYAP Sbjct: 178 AVGVESTVLDLTGEVP-TILRPGGITKEQLEEVLGEVAVDRPAPDQAPKAPGMKYRHYAP 236 Query: 233 RSQVRL---------RAIHVNPREALIRFGNVPIKNIENAIISLN---------LSKTGK 274 + ++ L R I R+ R V I + L+ L Sbjct: 237 KGELTLLIGERKNVIRKIKDELRKGHSRLKKVGILCTLESAPELHSQLPDLLFVLGSEHH 296 Query: 275 LKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 +E A NL+ +++ D+ G I + GLG AI NRL++A+ R Sbjct: 297 PEEVAGNLYQGLRLCDEQGMDMILAEGVSEKGLGFAIMNRLQKASGQR 344 >gi|240143383|ref|ZP_04741984.1| Sua5/YciO/YrdC/YwlC family protein [Roseburia intestinalis L1-82] gi|257204651|gb|EEV02936.1| Sua5/YciO/YrdC/YwlC family protein [Roseburia intestinalis L1-82] gi|291537128|emb|CBL10240.1| Sua5/YciO/YrdC/YwlC family protein [Roseburia intestinalis M50/1] gi|291540366|emb|CBL13477.1| Sua5/YciO/YrdC/YwlC family protein [Roseburia intestinalis XB6B4] Length = 350 Score = 344 bits (884), Expect = 1e-92, Method: Composition-based stats. Identities = 107/336 (31%), Positives = 164/336 (48%), Gaps = 26/336 (7%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 + +R+A E + +G +A PTETVYGL ++ +P A +R+Y K RP+ NPLI H+ Sbjct: 14 NKEDMREAAEIIRSGGLVAFPTETVYGLGANALDPEASKRIYAAKGRPSDNPLIVHICRF 73 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + A V P + LA FWPGPLT+++ + +T + T R+P Sbjct: 74 EELLSIAKEVPPQAEKLADAFWPGPLTMIV--WKNEKVPYETTGGMDTVAIRMPNHPVAL 131 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LI+ G +A PSAN SG+ S T H+ + +IP+I+DGG IG+ESTI+++ Sbjct: 132 ALIDESGCMIAAPSANTSGKPSPTEAGHVALD-LDGKIPMILDGGPVGIGIESTIIDLT- 189 Query: 186 EKKVRILRPGGLEIETLKRAISVELE-----YCVDETSTPQSPGMLKSHYAPRSQVRL-- 238 EK ILRPG + E L+ + E+ D T P++PGM HYAP++ + L Sbjct: 190 EKVPMILRPGYITKEMLEEVLGEEVRIDPGIIASDSTKKPKAPGMKYKHYAPKADLVLVE 249 Query: 239 ----------RAIHVNPREALIRFGNVPIKNIEN---AIISLNLSKTGKLKEAAFNLFNY 285 A+ + A ++ G V E+ A + + A +L+ Sbjct: 250 GEQEAVVAEINALVREKQAAGLKVGVVATDETESLYQADYVVTIGARSDEDAIARHLYKI 309 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 ++ DD +I S +G AI NRL +AA Sbjct: 310 LREFDDWNVDAIYSESFSTPRIGQAIMNRLMKAAGH 345 >gi|315641823|ref|ZP_07896827.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus italicus DSM 15952] gi|315482498|gb|EFU73037.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus italicus DSM 15952] Length = 346 Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats. Identities = 109/337 (32%), Positives = 179/337 (53%), Gaps = 21/337 (6%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+I I+ ++ +++A ++ G +A PTETVYGL + NP A++++Y++K RP+ NPL Sbjct: 1 MEIQKIS-TDEVKQAAHYIQQGELVAFPTETVYGLGASALNPQAVKKVYQVKGRPSDNPL 59 Query: 61 ICHVSDISMVKKHASVD-PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I HV+ VK++ PL+ L + FWPGPLT++L + T + T L T FR+ Sbjct: 60 IVHVTSFEQVKEYIQESHPLAEVLVQTFWPGPLTIILPIKPNT-FDTVVTGGLATVAFRM 118 Query: 120 PC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T +LI G PL PSAN SG S T +H++ I ++DGG +KIG+ES Sbjct: 119 PDQALTLELIRQAGVPLVGPSANLSGHPSPTTAEHVI-HDFEHSIKGVLDGGPTKIGVES 177 Query: 179 TIVNVQC-EKKVRILRPGGLEIETLKRAISVELE---YCVDETSTPQSPGMLKSHYAPRS 234 T++++ K ILRPG + E L++A + + + P++PGM HYAP Sbjct: 178 TVLDLSDPNKPPMILRPGAVTKEMLEQACHTPVAVDSHLLRADEAPKAPGMKYKHYAPVV 237 Query: 235 QVRLRA----------IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFN 284 V++ + +P A I G + + ++ + ++ A LF+ Sbjct: 238 PVQMVHEQEWEQVASYLAHHPIRAGILAGPTAAEVVRGEAAAVYMYADDSVQAATQGLFS 297 Query: 285 YMKIADD--SGASSIAFSSIPNHGLGIAINNRLERAA 319 ++ D+ +G + ++ P GLG+A NRL++AA Sbjct: 298 GLRALDETKAGLDCLYVATYPEDGLGVAYMNRLKKAA 334 >gi|221640201|ref|YP_002526463.1| translation factor SUA5 [Rhodobacter sphaeroides KD131] gi|221160982|gb|ACM01962.1| Translation factor SUA5 [Rhodobacter sphaeroides KD131] Length = 312 Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats. Identities = 135/315 (42%), Positives = 184/315 (58%), Gaps = 15/315 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A L AG +A+PTETVYGLA D+R+ A+ R++E K RP NPLI H+ D+ Sbjct: 11 AEGIAEAARLLAAGGLVALPTETVYGLAGDARDDRAVARIFEAKGRPQFNPLIVHLPDLG 70 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 +++A D +L LA+ FWPGPLTLVL L T + PL +A L T RVP ++L Sbjct: 71 AARRYARFDDEALRLAEAFWPGPLTLVLPLGDT-PVSPLVSAGLSTVAIRVPAHPLAQQL 129 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + +G PLA PSAN SG++S T +H+L + I ++DGG +G+ESTI + + Sbjct: 130 LRAFGGPLAAPSANPSGRVSPTRPEHVL-DGLSGRIEAVLDGGTCGVGVESTI--LAPGE 186 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 +LRPGGL E L+ + L P +PG L SHYAP + VRL A P E Sbjct: 187 PPLLLRPGGLPAEALEECLGRPL-VAGGSADRPSAPGQLASHYAPEAPVRLGATEARPGE 245 Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307 + I FG + NLS +G L EAA NLF++++ AD G IA + +P GL Sbjct: 246 SWIGFGKLGGP--------RNLSPSGDLVEAAANLFHFLREADREG-RPIAVAPVPERGL 296 Query: 308 GIAINNRLERAAAPR 322 G AIN+RL RAAAPR Sbjct: 297 GRAINDRLRRAAAPR 311 >gi|229826322|ref|ZP_04452391.1| hypothetical protein GCWU000182_01694 [Abiotrophia defectiva ATCC 49176] gi|229789192|gb|EEP25306.1| hypothetical protein GCWU000182_01694 [Abiotrophia defectiva ATCC 49176] Length = 349 Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats. Identities = 113/334 (33%), Positives = 166/334 (49%), Gaps = 25/334 (7%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 L KA E + G +A PTETVYGL + + A+ ++YE K RP+ NPLI H+S+ Sbjct: 15 KEGLYKAAEIIKNGGLVAFPTETVYGLGANGLDENAVPKIYEAKGRPSDNPLILHISEFD 74 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 +K + ++ LA FWPGPLT+V + + +T L++ R+P ++ Sbjct: 75 EIKNIVKEIPDVAFVLADEFWPGPLTMVF--KKSDIVPYRTTGGLESVAVRMPSNKIARE 132 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LI+ G P+A PSAN SG+ S T H+L + +I ++IDGG IGLESTIV+V E Sbjct: 133 LIKIAGVPVAAPSANSSGRPSPTKADHVLCD-LDGKIDMVIDGGTVDIGLESTIVDVTGE 191 Query: 187 KKVRILRPGGLEIETLKRAIS-VELEYCV-----DETSTPQSPGMLKSHYAPRSQVRLRA 240 V ILRPG + E L AI V+++ V D+ P++PGM HYAP+ ++ + Sbjct: 192 VPV-ILRPGFITEEMLSEAIGRVDIDEAVKSLTLDKNLKPKAPGMKYRHYAPQGKMTIYK 250 Query: 241 IHVNPREALIR-------------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMK 287 +I K A I +++ + A NLF+ ++ Sbjct: 251 GKPEKVVKIINEETAKSEGKKTAVLATDETKRYYKADIVISVGSREDCESIAHNLFDTLR 310 Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 DD GA I LG AI NRL ++A Sbjct: 311 SFDDMGAEIIFSEGFDESRLGFAIMNRLHKSAGY 344 >gi|304393470|ref|ZP_07375398.1| Sua5/YciO/YrdC family protein [Ahrensia sp. R2A130] gi|303294477|gb|EFL88849.1| Sua5/YciO/YrdC family protein [Ahrensia sp. R2A130] Length = 337 Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats. Identities = 129/314 (41%), Positives = 179/314 (57%), Gaps = 8/314 (2%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 +T + +A L G + +PTETVYGLA D+ N TA+ ++Y K RP NPLI HV Sbjct: 17 MTTGDGFEQAARILREGGLLGVPTETVYGLAADACNATAVAKIYAAKGRPDFNPLIVHVD 76 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125 + M ++ A DPLS LA+ FWPGPLTLVL L + P TA L T R P G Sbjct: 77 SLKMAEELAVFDPLSRRLAEEFWPGPLTLVLPLRGDAALAPSVTAGLGTVALRQPIGVLA 136 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +L + G +A PSAN SG+IS T +H+ + + + L++DGG +G+ESTIV Sbjct: 137 ELASSLGTGIAAPSANSSGRISPTTAQHV-ADDLEDRVDLVLDGGTCAVGVESTIVKCT- 194 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245 K+ ILR GG+ + L + +++ ++PG L +HYAP +R+ A V+ Sbjct: 195 NGKINILRTGGITADQLTEIAPLAEP---EKSGKIEAPGQLLAHYAPDVPLRMNAHEVDE 251 Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305 E + FG P + +A SLNLS TG + EAA NLF MK D +G + IA +P + Sbjct: 252 GEGQLAFGPAP---LHSAGPSLNLSPTGDVAEAARNLFAMMKTLDSAGVAGIAVQPVPEN 308 Query: 306 GLGIAINNRLERAA 319 G+G AIN+RL RAA Sbjct: 309 GIGAAINDRLRRAA 322 >gi|323142098|ref|ZP_08076946.1| Sua5/YciO/YrdC/YwlC family protein [Phascolarctobacterium sp. YIT 12067] gi|322413485|gb|EFY04356.1| Sua5/YciO/YrdC/YwlC family protein [Phascolarctobacterium sp. YIT 12067] Length = 368 Score = 343 bits (882), Expect = 2e-92, Method: Composition-based stats. Identities = 106/335 (31%), Positives = 166/335 (49%), Gaps = 25/335 (7%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 + +++A + AG ++ PTETVYGL D NP A+ +++ K RP NPLI H++ Sbjct: 14 NQEIMQEAAALIRAGEVVSFPTETVYGLGADGLNPEAVAKIFAAKGRPNDNPLILHIAKK 73 Query: 68 SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + + + ++ + L + FWPGPLTL+++ + + +A L+T R P F + Sbjct: 74 EDIAQLTTCLNANAKKLMEHFWPGPLTLIVN--KSAIVPDAVSAGLETVAVRFPSNKFAQ 131 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 I G P+A PSAN SG+ S TN + +L + +I ++DGG IGLEST+V+ Sbjct: 132 DFIRACGCPIAAPSANISGRPSPTNAQDVL-EDMQGKIAGMLDGGNCGIGLESTVVDTTS 190 Query: 186 EKKVRILRPGGLEIETLKRAIS-VELEYCV--DETSTPQSPGMLKSHYAPRSQVRLRAIH 242 ILRPGG+ E L + VE++ + D+ P++PGM HYAP++ V L Sbjct: 191 AVP-TILRPGGITYEMLTEVMGAVEIDPALQGDKNFKPKAPGMKYRHYAPKAPVYLFEGE 249 Query: 243 VNPR---------EALIRFGNVPIKNIENAII------SLNLSKTGKLKEA-AFNLFNYM 286 G + +E+ + L LS G +E A +LF + Sbjct: 250 ACKCLPQVIAKALAEGKTVGVLCGHELESELAELVEKQQLQLSCWGDSREQLAADLFYLL 309 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 + D + I + GLG+AI NRL +AA Sbjct: 310 RDFDRTCPDVILAEGVEEDGLGLAIMNRLRKAAGY 344 >gi|206901525|ref|YP_002250522.1| Sua5/YciO/YrdC/YwlC family protein [Dictyoglomus thermophilum H-6-12] gi|206740628|gb|ACI19686.1| Sua5/YciO/YrdC/YwlC family protein [Dictyoglomus thermophilum H-6-12] Length = 337 Score = 343 bits (882), Expect = 2e-92, Method: Composition-based stats. Identities = 113/328 (34%), Positives = 165/328 (50%), Gaps = 20/328 (6%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D AL KA + LDAG +A PTETVYGL D+ NP A+R+++ K RP NP+I HV Sbjct: 13 DLEALEKAAQVLDAGGLVAFPTETVYGLGADALNPEAVRKIFVAKGRPQDNPIIVHVGKK 72 Query: 68 SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125 V A V P++ L + FWPGPLTL+ + ++ + TA R P Sbjct: 73 EQVYSLAENVSPIAERLMERFWPGPLTLIF--YKSNLVNDIVTAGSPKVGIRQPMNKVAL 130 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 KL+E +G P+A PSAN SG+ S T +H++ + I +IIDGG G+EST+++V Sbjct: 131 KLLEIFGRPIAAPSANASGRPSPTRAEHVI-EDLGDRIDMIIDGGEVSFGVESTVLDVTT 189 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244 + + I RPG E ++R I ++ +T SPG+ HYAP+ + + Sbjct: 190 DPPI-IYRPGACPKEEIERVIGRKVLLWRGKKTEDIPSPGLKYRHYAPKVPLYIIEEFNE 248 Query: 245 PREALI--------RFGNVPIKNIE----NAIISLNLSKTGKLKEAAFNLFNYMKIADDS 292 + I + G + K E + + + LKE A NLF Y++ + Sbjct: 249 IWQNKIDIWLKEGKKVGILVSKENEGLYPDIVKKYVVGSRNNLKEVALNLFFYLRKLEKE 308 Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAA 320 I S P G+G+AI +RL RAA Sbjct: 309 -VDIIISESFPEEGIGLAIMDRLRRAAG 335 >gi|89897678|ref|YP_521165.1| hypothetical protein DSY4932 [Desulfitobacterium hafniense Y51] gi|89337126|dbj|BAE86721.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 348 Score = 343 bits (882), Expect = 2e-92, Method: Composition-based stats. Identities = 112/348 (32%), Positives = 176/348 (50%), Gaps = 30/348 (8%) Query: 1 MQIMSIT------DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR 54 MQ +T + +++A + + G +A+PTETVYGL ++ + A + ++++K R Sbjct: 1 MQTKRVTIDAQHPQTEWIKEAAQLIREGQLVALPTETVYGLGANAMDAHACQEIFKVKGR 60 Query: 55 PAMNPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK 113 P NPLI H+SD++MVK+ P + A FWPGPLTLVL+ T + + + L Sbjct: 61 PQDNPLIVHISDLAMVKRLVEEWTPQAALCADKFWPGPLTLVLE--KTAFVPDVVSGGLG 118 Query: 114 TACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172 T R+P +LI+ G P+A PSAN SG+ S T H+ + +IPLI+DGG Sbjct: 119 TVAIRMPKHPVALELIKEAGVPIAAPSANLSGKPSPTQGIHVWKD-LKGKIPLILDGGPC 177 Query: 173 KIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAP 232 +G+EST++++ ++ ILRPGG+ E L+ + P++PGM HYAP Sbjct: 178 AVGVESTVLDLT-DEVPTILRPGGITKEQLEEVLGEVAVDRPAPDQAPKAPGMKYRHYAP 236 Query: 233 RSQVRL---------RAIHVNPREALIRFGNVPIKNIENAIISLN---------LSKTGK 274 + ++ L R I R+ R V I + L+ L Sbjct: 237 KGELTLLIGERKNVIRKIKDELRKGHSRLKKVGILCTLESAPELHSQLPDLLFVLGSEHH 296 Query: 275 LKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 +E A NL+ +++ D+ G I + GLG AI NRL++A+ R Sbjct: 297 PEEVAGNLYQGLRLCDEQGMDMILAEGVSEKGLGFAIMNRLQKASGQR 344 >gi|126463159|ref|YP_001044273.1| Sua5/YciO/YrdC/YwlC family protein [Rhodobacter sphaeroides ATCC 17029] gi|126104823|gb|ABN77501.1| translation factor SUA5 [Rhodobacter sphaeroides ATCC 17029] Length = 312 Score = 343 bits (882), Expect = 2e-92, Method: Composition-based stats. Identities = 135/315 (42%), Positives = 183/315 (58%), Gaps = 15/315 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A L AG +A+PTETVYGLA D+R+ A+ R++E K RP NPLI H+ D+ Sbjct: 11 AEGIAEAARLLAAGGLVALPTETVYGLAGDARDDRAVARIFEAKGRPQFNPLIVHLPDLG 70 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 +++A D +L LA+ FWPGPLTLVL L T + PL +A L T RVP ++L Sbjct: 71 AARRYARFDDEALRLAEAFWPGPLTLVLPLGDT-PVSPLVSAGLSTVAIRVPAHPLAQQL 129 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + +G PLA PSAN SG++S T H+L + I ++DGG +G+ESTI + + Sbjct: 130 LRAFGGPLAAPSANPSGRVSPTRPDHVL-DGLSGRIEAVLDGGTCGVGVESTI--LAPGE 186 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 +LRPGGL E L+ + L P +PG L SHYAP + VRL A P E Sbjct: 187 PPLLLRPGGLPAEALEECLGRPL-VAGGSADRPSAPGQLASHYAPEAPVRLGATEARPGE 245 Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307 + I FG + NLS +G L EAA NLF++++ AD G IA + +P GL Sbjct: 246 SWIGFGKLGGP--------RNLSPSGDLVEAAANLFHFLREADREG-RPIAVAPVPERGL 296 Query: 308 GIAINNRLERAAAPR 322 G AIN+RL RAAAPR Sbjct: 297 GRAINDRLRRAAAPR 311 >gi|225028193|ref|ZP_03717385.1| hypothetical protein EUBHAL_02465 [Eubacterium hallii DSM 3353] gi|224954505|gb|EEG35714.1| hypothetical protein EUBHAL_02465 [Eubacterium hallii DSM 3353] Length = 353 Score = 343 bits (882), Expect = 2e-92, Method: Composition-based stats. Identities = 108/343 (31%), Positives = 166/343 (48%), Gaps = 27/343 (7%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 ++ + AL+KA E + G +A PTETVYGL D+ N A ++Y K RP+ NPLI Sbjct: 10 KVSPEEKAAALKKAGEIIREGGLVAFPTETVYGLGADALNAEASAKIYAAKGRPSDNPLI 69 Query: 62 CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 H+ D+ V + A V + + + FWPGPLT++L+ + + +T LKT R+P Sbjct: 70 VHIHDVDQVYEIASEVPEAAKKVMEKFWPGPLTVILN--KKSCVPDGTTGGLKTVAIRMP 127 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + I G +A PSAN SG+ S T H+ + IPLI+DGG IG+EST Sbjct: 128 SHPLARDFIRESGRMIAAPSANTSGRPSPTLASHVY-EDMQGRIPLILDGGAVGIGIEST 186 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAI-SVELEYCV-----DETSTPQSPGMLKSHYAPR 233 I+++ + ILRPG + + L+ + V ++ V + ++PGM HYAP+ Sbjct: 187 IIDMSTDTP-TILRPGYITKDMLEEVLPKVNIDPAVTGRTMKKNVVAKAPGMKYRHYAPK 245 Query: 234 SQVRLRAIHVNPREALI------------RFGNVPIKNI---ENAIISLNLSKTGKLKEA 278 Q+ L + A I + G + +A I ++ K + Sbjct: 246 GQLTLVEGDRDKVIARINELVKEKEEEGHKVGVIGTDETLDSYHADILRSIGSRQKPETV 305 Query: 279 AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 A NL+ ++ DD + S GLG AI NR+ +AA Sbjct: 306 AANLYRILREFDDLECDYMYSESFFEQGLGNAIMNRMLKAAGY 348 >gi|84515815|ref|ZP_01003176.1| Sua5/YciO/YrdC family protein [Loktanella vestfoldensis SKA53] gi|84510257|gb|EAQ06713.1| Sua5/YciO/YrdC family protein [Loktanella vestfoldensis SKA53] Length = 315 Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats. Identities = 131/316 (41%), Positives = 171/316 (54%), Gaps = 13/316 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D+ L +A E L G ++ PTETVYGL D+RN A+ ++ K RP+ NPLI H+ DI Sbjct: 12 DAAGLARAAEILTQGGLVSFPTETVYGLGADARNDRAVAAIFAAKGRPSFNPLIVHLGDI 71 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + + + + LA FWPG LTLVL L I L TA L + RVP + Sbjct: 72 TAANEICDFNDDARCLAAAFWPGALTLVLPLRPQAGISRLVTAGLDSIAVRVPDHKVAQG 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+ +G P+A PSAN SG+IS T H+ S+ I ++DGG +GLESTIV Sbjct: 132 LLAAFGGPVAAPSANASGRISPTTAAHV-RDSLGDRIDALVDGGPCFVGLESTIVACL-- 188 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246 +LR GG+ E + + L + P SPG L SHYAP QVRL A Sbjct: 189 GTPTLLRAGGIPSEAIAACLGRPLAIS-ENPDAPVSPGQLLSHYAPIGQVRLNATARQDG 247 Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306 E ++ FG + LNLS G L EAA LF+ + D GA+ IA + IP+HG Sbjct: 248 EVMLGFGLM--------DADLNLSPAGDLTEAAARLFDCLHQLDAMGAARIAVAPIPDHG 299 Query: 307 LGIAINNRLERAAAPR 322 LG AIN+RL+RAAAPR Sbjct: 300 LGRAINDRLKRAAAPR 315 >gi|332800045|ref|YP_004461544.1| Sua5/YciO/YrdC/YwlC family protein [Tepidanaerobacter sp. Re1] gi|332697780|gb|AEE92237.1| Sua5/YciO/YrdC/YwlC family protein [Tepidanaerobacter sp. Re1] Length = 347 Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats. Identities = 96/329 (29%), Positives = 162/329 (49%), Gaps = 22/329 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 ++KA E + G +A PTETVYGL ++ + +++Y K RP NPLI H+ +S + Sbjct: 19 IKKAAEIIKTGGLVAFPTETVYGLGGNALDEHVAKKIYAAKGRPQDNPLIVHIHSLSQLD 78 Query: 72 KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P + L FWPGPLT++ I +T L T R+P +LI+ Sbjct: 79 ELVKEIPTRAAVLMDKFWPGPLTIIF--HKKDIIPYSTTGGLDTVAIRMPAHSVALELIK 136 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G P+A PSAN SG+ S + + + + +I +I+DGG + +G+EST++++ EK Sbjct: 137 ESGVPIAAPSANISGRPSPACAEDV-AEDLFGKIEMILDGGPTSVGVESTVLDL-SEKVP 194 Query: 190 RILRPGGLEIETLKRAIS-VELEYCVDETSTPQSPGMLKSHYAPRSQV------------ 236 ILRPGG+ E L+ + V L+ + P+SPG HYAP++Q+ Sbjct: 195 IILRPGGVTKEDLEDVLGCVNLDPGLAPGEKPRSPGQKYRHYAPKAQMTVIEGCMENQVK 254 Query: 237 RLRAIHVNPREALIRFGNVP---IKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293 ++ + ++ G + +++ +++ + NLF ++ D G Sbjct: 255 TIQELTKQLESGGLKVGIMATAQTRHLYTRGYVISVGDRTAPLTISSNLFTILRKFDRLG 314 Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAAPR 322 I I G+G+A+ NRL +AA + Sbjct: 315 VDRIFAEGISKDGIGLAVMNRLYKAAGYK 343 >gi|255525830|ref|ZP_05392759.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium carboxidivorans P7] gi|255510473|gb|EET86784.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium carboxidivorans P7] Length = 350 Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats. Identities = 103/335 (30%), Positives = 169/335 (50%), Gaps = 26/335 (7%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + + +A + G +A PTETVYGL ++ NP+A+++++E K RP NP+I H++D Sbjct: 14 DRDIIIEAANVIKEGGLVAFPTETVYGLGGNALNPSAVKKIFEAKGRPQDNPVIAHIADF 73 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + + ++ L + FWPGP+TL+L + + ++TA LK R+P + Sbjct: 74 KEINALVKEIPEVAKKLMEKFWPGPMTLILQ--KSEIVPDVTTAGLKCVGIRMPSNIIAR 131 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 + I G P+A PSAN SG+ S T+V+ + + +I II G + IG+EST+++ Sbjct: 132 EFIRACGVPIAAPSANISGRPSPTDVERCI-EDMDGKIDYIIGGEMCDIGVESTVIDCTV 190 Query: 186 EKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 + V ILRPGG+ +E LK I + D+ P++PGM HYAP++ V++ A Sbjct: 191 -QPVCILRPGGITLEMLKEVDKDAYIDPAIMKKPDKDFKPKAPGMKYKHYAPKAHVKIVA 249 Query: 241 IHVNPREALIR---------------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNY 285 + A I K I ++L + + NLF Sbjct: 250 GDLQKTIAKINEIVQNYIGENKSVGIMATDETKKYYKNGIVVSLGSREDMISISKNLFET 309 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ DD G I + G+G+AI NRL+++A Sbjct: 310 LRSFDDKGVDVIVSEAFEEIGVGVAIMNRLQKSAG 344 >gi|329114409|ref|ZP_08243171.1| Putative protein YwlC [Acetobacter pomorum DM001] gi|326696485|gb|EGE48164.1| Putative protein YwlC [Acetobacter pomorum DM001] Length = 386 Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats. Identities = 126/319 (39%), Positives = 179/319 (56%), Gaps = 9/319 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S+ L+ A L G +A TETVYGL D+ P + R++E K RP NPLI H +D Sbjct: 62 SSGLQTAARILREGGLVAFGTETVYGLGGDATQPQTVARIFEAKNRPRFNPLISHFADAQ 121 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127 + +PL+ LA +FWPGPLTL+L + + L+ L T RVP G + L Sbjct: 122 AAFTQVTANPLAHKLAHMFWPGPLTLILPRAPHSTVSDLAADGLPTLAVRVPKGQTVQAL 181 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ P+A PSANRSG+IS ++ H+L + I ++D G ++G+EST++++ + Sbjct: 182 LKLVQRPIAAPSANRSGRISPSDAAHVL-EELDGRIDAVLDSGPCQVGVESTVLDISNPE 240 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 + +LRPGG+ +E L+ + + P SPG + SHYAP VRL A+ V P E Sbjct: 241 RPTLLRPGGITLEALQAVCGTIFMPETEVDAAPASPGRMLSHYAPHLPVRLNAVDVAPDE 300 Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG----ASSIAFSSIP 303 AL+ FGN +S NLS++G L+EAA LF ++ D G IA IP Sbjct: 301 ALLAFGNTQPSGTP---LSWNLSESGNLEEAAARLFTGLRTLDKQGQNLHLRGIAVQPIP 357 Query: 304 NHGLGIAINNRLERAAAPR 322 HGLG+AI +RL RAAAPR Sbjct: 358 PHGLGLAIQDRLNRAAAPR 376 >gi|15896136|ref|NP_349485.1| translation factor (SUA5) [Clostridium acetobutylicum ATCC 824] gi|15025929|gb|AAK80825.1|AE007785_10 Predicted translation factor (SUA5) [Clostridium acetobutylicum ATCC 824] gi|325510290|gb|ADZ21926.1| translation factor (SUA5) [Clostridium acetobutylicum EA 2018] Length = 350 Score = 343 bits (880), Expect = 2e-92, Method: Composition-based stats. Identities = 100/335 (29%), Positives = 167/335 (49%), Gaps = 26/335 (7%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L++A EF+ G + PTETVYGL ++ + A ++++E K RP NPLI H+SD Sbjct: 14 DEQILKEAGEFIKNGKLVVFPTETVYGLGANAEDGEATKKIFEAKGRPQDNPLIIHISDF 73 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 V K ++ + L + FWPGP+TL+++ + I +++A L + R+P + Sbjct: 74 EDVDKVVRNISDSARKLMREFWPGPMTLIME--KKSIISDVTSAGLTSVGVRMPSDKIAR 131 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 KLI+ G +A PSAN SG+ S T+V+ + + ++ II G + GLEST+++ Sbjct: 132 KLIKFSGVSIAAPSANLSGKPSPTDVERCI-EDLNGKVDYIIGGNKCEYGLESTVIDCTV 190 Query: 186 EKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 V ILRPG + +E +++ I + + + P++PGM HYAP++ V++ Sbjct: 191 N-PVCILRPGAITLEMVRKVDEKAYIDPAIMAKPEPSLKPKAPGMKYKHYAPKAPVKIID 249 Query: 241 IHVNPREALI------------RFGNVPIKNIEN---AIISLNLSKTGKLKEAAFNLFNY 285 + I + G + +N I ++L + NLF Sbjct: 250 GDLKKTIEKINEMVQNYIDDNKKVGIMATDETKNNYRNAIVISLGSRKDIYSIGRNLFET 309 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ DD G I + G G+AI NRL ++A Sbjct: 310 LRDFDDCGVDVILSEAFDEEGFGVAIMNRLNKSAG 344 >gi|319784740|ref|YP_004144216.1| Sua5/YciO/YrdC/YwlC family protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170628|gb|ADV14166.1| Sua5/YciO/YrdC/YwlC family protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 355 Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats. Identities = 153/317 (48%), Positives = 200/317 (63%), Gaps = 4/317 (1%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 AL +A L G +AIPTETVYGLA D+ N + R++E K RP NPLI HV+D++M Sbjct: 40 EALERALALLREGDVVAIPTETVYGLAGDATNGIGVARIFEAKGRPRFNPLIAHVADMAM 99 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129 ++ A DPLS LA+ FWPGPLTLVL IHPL TA L T R+P GF LI Sbjct: 100 AERLALFDPLSKKLARAFWPGPLTLVLPQRPGNGIHPLVTAGLDTIALRMPRGFGGDLIA 159 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PLA PSAN SG+IS T + + ++ + I L++DGG + +GLESTI+ + E ++ Sbjct: 160 RLGRPLAAPSANSSGRISATTAQAV-AADLGARIKLVVDGGATPVGLESTILKAEGE-RM 217 Query: 190 RILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREAL 249 R+LRPGG+ E ++ +E T++ ++PGML SHYAP + +RL A V EAL Sbjct: 218 RLLRPGGIAAEE--IEAAIGMELLRGGTASIEAPGMLASHYAPGAAMRLNAGTVGEGEAL 275 Query: 250 IRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGI 309 + FG+ A LNLS+TG L+EAA NLF YM+ D SGA +IA IP GLG Sbjct: 276 LGFGSQRADGWRRAEAFLNLSETGDLREAASNLFAYMQALDRSGARTIAVEPIPCDGLGE 335 Query: 310 AINNRLERAAAPRNQSQ 326 AIN+RL RAAAPR+ +Q Sbjct: 336 AINDRLSRAAAPRDITQ 352 >gi|297717892|gb|ADI50089.1| hypothetical protein [Candidatus Odyssella thessalonicensis L13] Length = 310 Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats. Identities = 127/320 (39%), Positives = 181/320 (56%), Gaps = 14/320 (4%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M ++ L +ACE L +G +AIPTETVYGLA D+ N A+ ++Y IK+RP NPL Sbjct: 1 MVTIASFSPEVLSQACELLSSGDVVAIPTETVYGLAADATNDKAVAKIYAIKQRPEFNPL 60 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 I H K + D + LA FWPGP+T VL + I L+++ L+T R+P Sbjct: 61 IIHCHSAQQAKSYVQFDKRAEKLADAFWPGPITFVLKRYPDSAISFLASSGLETLAVRIP 120 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + LI+ Y PLA PSAN S IS T+ + +S+ +PLIIDGG +++G+EST Sbjct: 121 AHPVAQALIKAYSKPLAAPSANLSQTISPTSAIDV-QASLGNRVPLIIDGGQTRVGVEST 179 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 I+++ E ILRPGG+ +E ++ I + + ++PGM+ HYAP +RL Sbjct: 180 IIDLT-EAIPHILRPGGISVEQIQAVIGTVD---LSRRAGIKAPGMMARHYAPSVPMRLN 235 Query: 240 AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF 299 A E + FG++ NLS +G L+EAA NLF M++ D + IA Sbjct: 236 AAAPLKGELFLGFGSM--------DCDYNLSPSGNLEEAAANLFRMMRLMDRQNIAGIAV 287 Query: 300 SSIPNHGLGIAINNRLERAA 319 + IP HGLG+AIN+RL RAA Sbjct: 288 APIPKHGLGLAINDRLMRAA 307 >gi|197302164|ref|ZP_03167223.1| hypothetical protein RUMLAC_00890 [Ruminococcus lactaris ATCC 29176] gi|197298595|gb|EDY33136.1| hypothetical protein RUMLAC_00890 [Ruminococcus lactaris ATCC 29176] Length = 508 Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats. Identities = 105/343 (30%), Positives = 158/343 (46%), Gaps = 25/343 (7%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + +A L G +A PTETVYGL D+ A ++ Y K RP+ NPLI H++D Sbjct: 14 DPEVIEEAGNILKNGGLVAFPTETVYGLGADALKEEAAKKTYAAKGRPSDNPLIVHIADY 73 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125 +K A ++ + LA FWPGPLT++ + + + +T L T R+P Sbjct: 74 EDLKAVAVNIPAKTDALAAHFWPGPLTMIFE--KSEIVPYGTTGGLDTVAVRMPSDPVAA 131 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +I G ++ PSAN SG+ S T +H+ S + +I +I+D G IGLESTI+++ Sbjct: 132 AVIRAAGGFVSAPSANTSGRPSPTTAQHV-SEDLDGKIDMILDSGSVDIGLESTILDMTV 190 Query: 186 EKKVRILRPGGLEIETLKRAISV----ELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241 E + ILRPG + + + I E + P++PGM HYAP++++ + Sbjct: 191 EPPM-ILRPGAITADMFEEVIGPVSVDETILGSESNKAPKAPGMKYRHYAPKAKLIIAEG 249 Query: 242 HVNPREALI------------RFGNVPIKN---IENAIISLNLSKTGKLKEAAFNLFNYM 286 + I R G + I N+ K A NL+ + Sbjct: 250 DIREEVLAIRQLAYAAHRQGERVGIIATGETLPFYKYGIVKNIGTRENEKTIARNLYRVL 309 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQSQRIV 329 + DD I S G+G AI NRLE+AA S V Sbjct: 310 REFDDEKVDIIYSESFAMQGIGSAIMNRLEKAAGHLRISASAV 352 >gi|251799799|ref|YP_003014530.1| Sua5/YciO/YrdC/YwlC family protein [Paenibacillus sp. JDR-2] gi|247547425|gb|ACT04444.1| Sua5/YciO/YrdC/YwlC family protein [Paenibacillus sp. JDR-2] Length = 356 Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats. Identities = 114/333 (34%), Positives = 165/333 (49%), Gaps = 24/333 (7%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 L +A L G +A PTETVYGL D+RN TA+ +++ K RP+ NPLI H++D + + Sbjct: 21 QLEEAASLLRDGELVAFPTETVYGLGADARNTTAVEGIFKAKGRPSDNPLIVHIADENQL 80 Query: 71 KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-KLI 128 + L+ L K WPGPLT+VL + T + PL TA L T R+P LI Sbjct: 81 AELVLPYPELAGRLMKELWPGPLTIVLPVR-TGAVSPLVTAGLTTVGIRMPDHPAALALI 139 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 G P+A PSANRSG+ S T H+L + +I I+DGG + +GLEST++ + Sbjct: 140 RQSGCPVAAPSANRSGRPSPTLAAHVL-EDLAGKISGIVDGGATGVGLESTVIELPDSNT 198 Query: 189 VRILRPGGLEIETL-----KRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 +RILRPGG+ E L + I D T P+SPGM +HYAP +R+ Sbjct: 199 IRILRPGGITAEQLRSAAPEAVIDAPAAANPDVTEAPRSPGMKYAHYAPEGDLRIVLGEP 258 Query: 244 NPREALI------------RFGNVPIKN---IENAIISLNLSKTGKLKEAAFNLFNYMKI 288 + I + G + +A + L+ ++AA NL+ ++ Sbjct: 259 AKAVSYIQEQLSLSTTTSMKTGVLTFDERAAAYDADLILSYGSELHPEQAAHNLYAALRR 318 Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 D G I G+G+A+ NRL +AA Sbjct: 319 FDSEGIQLIWAEGCSEEGIGLALMNRLAKAAGH 351 >gi|225378684|ref|ZP_03755905.1| hypothetical protein ROSEINA2194_04354 [Roseburia inulinivorans DSM 16841] gi|225209521|gb|EEG91875.1| hypothetical protein ROSEINA2194_04354 [Roseburia inulinivorans DSM 16841] Length = 357 Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats. Identities = 103/337 (30%), Positives = 167/337 (49%), Gaps = 26/337 (7%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 D N +++A E + G +A PTETVYGL D+ +P A +++Y K RP+ NPLI H+ Sbjct: 20 IDENEMKEAAELIRKGELVAFPTETVYGLGADALHPEASKKIYAAKGRPSDNPLIVHICK 79 Query: 67 ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFT 124 + A V + LA FWPGPLT+++ + +T ++T R+P Sbjct: 80 FEELVSIAKEVPAQAEKLADAFWPGPLTMIV--WKNEKVPYETTGGMETVAIRMPKHPVA 137 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 KLIE G +A PSAN SG+ S T H+ + +IP+I+DGG IG+ESTI+++ Sbjct: 138 LKLIEESGCLIAAPSANTSGKPSPTEASHVKLD-LDGKIPMILDGGPVGIGIESTIIDLT 196 Query: 185 CEKKVRILRPGGLEIETLKRAISVELE-----YCVDETSTPQSPGMLKSHYAPRSQVRL- 238 + + ILRPG + E L+ + E++ D + P++PGM HYAP++ + L Sbjct: 197 EDTPM-ILRPGYITKEMLEEVLGEEVKIDPGIIASDSLTKPKAPGMKYKHYAPKADLVLV 255 Query: 239 -----------RAIHVNPREALIRFGNVPIKNIEN---AIISLNLSKTGKLKEAAFNLFN 284 + ++ ++ G + ++ A I +++ A +L+ Sbjct: 256 DGEAENVVKKINELVAEKQKNGLKVGVIATDETKDQYQADIVVSIGARADEDAIAQHLYK 315 Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 ++ DD +I S +G AI NRL +AA Sbjct: 316 ILREFDDWNVDAIYSESFATPRIGQAIMNRLLKAAGH 352 >gi|254471762|ref|ZP_05085163.1| Sua5/YciO/YrdC/YwlC family protein [Pseudovibrio sp. JE062] gi|211958964|gb|EEA94163.1| Sua5/YciO/YrdC/YwlC family protein [Pseudovibrio sp. JE062] Length = 329 Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats. Identities = 138/319 (43%), Positives = 188/319 (58%), Gaps = 3/319 (0%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + D+ + C+ L G +AIPTETVYGLA D+ N A +YE K RP+ NPLI H+ Sbjct: 13 LEDTQIFQDICDALSDGKLVAIPTETVYGLAADATNGKACAGIYEAKGRPSFNPLISHID 72 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFT 124 + + HA D +L LA+ FWPGPLTLVL L T+ + L+ A L+T RVP Sbjct: 73 SLEAAQTHAFFDDRALKLAEAFWPGPLTLVLPKLPTSPVSDLAVAGLETIALRVPRSAVM 132 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + L + G PLA PSAN SG+IS T + +++ + + IID G + +G+ESTIV++ Sbjct: 133 RALCKRTGLPLAAPSANLSGRISGTTAEDVIND-LKDHLSYIIDSGATPVGVESTIVSLV 191 Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244 ++ +LRPGGL E ++ + +L + S P +PGML SHYAP S +RL A V Sbjct: 192 GDRP-TLLRPGGLARENVEAVLGEKLVRAGTDDSAPMAPGMLTSHYAPNSHIRLNAEEVT 250 Query: 245 PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPN 304 EALI FG+V + A + LS + L EAA LF ++ AD IA IP+ Sbjct: 251 AGEALITFGSVLPDGSDKAAKLVPLSDSEDLTEAAARLFTALRQADLGENGKIAVMPIPH 310 Query: 305 HGLGIAINNRLERAAAPRN 323 HGLG AIN+RL RAAAPR+ Sbjct: 311 HGLGEAINDRLARAAAPRD 329 >gi|293553330|ref|ZP_06673966.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1039] gi|291602554|gb|EFF32770.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1039] Length = 341 Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats. Identities = 111/338 (32%), Positives = 172/338 (50%), Gaps = 21/338 (6%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ D L++A E L G +A PTETVYGL ++ P A+++++ +K RP NPL Sbjct: 1 METKR-YDETELQEAAEALKEGELVAFPTETVYGLGANALLPNAVKKVFSVKGRPQDNPL 59 Query: 61 ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I HV+ VK++ P + + K FWPGPLTL+ + T + + T L TA FR+ Sbjct: 60 IVHVASFEQVKEYVDNFHPAAEKIVKNFWPGPLTLIFKIKKDT-LPSVVTGGLSTAAFRM 118 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T ++IE G PL PSAN SG+ S T H+ + +I IID G ++IG+ES Sbjct: 119 PDNKKTLEVIELSGVPLVGPSANTSGKPSPTTADHVY-HDLQGKITGIIDDGATRIGVES 177 Query: 179 TIVNVQCEKK-VRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRS 234 T++++ ILRPG + E ++ I + ++ V E TP++PGM HY+P + Sbjct: 178 TVLDLSDPTAMPMILRPGAVTKEQIEAVIESPVAIDQHLVKENETPKAPGMKYKHYSPDT 237 Query: 235 QVRLRAI------HVNPREALIRFGNVPIKNIENAI----ISLNLSKTGKLKEAAFNLFN 284 +V + + IR G + I + + ++ + ++ AA LF Sbjct: 238 RVLMVRDGDWSTAVQWAKNKKIRAGVIASPEIADQVRTDTAAVYMYNDNSVEAAAKGLFA 297 Query: 285 YMKIADD--SGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ D+ G I P GLG A NRL++AA Sbjct: 298 GLRGLDEPTLGLDLIFVQVYPETGLGNAYMNRLKKAAG 335 >gi|254504637|ref|ZP_05116788.1| Sua5/YciO/YrdC/YwlC family protein, putative [Labrenzia alexandrii DFL-11] gi|222440708|gb|EEE47387.1| Sua5/YciO/YrdC/YwlC family protein, putative [Labrenzia alexandrii DFL-11] Length = 331 Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats. Identities = 136/314 (43%), Positives = 190/314 (60%), Gaps = 5/314 (1%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 C L G +A+PTETVYGLA D+ + TA R+++ K RP+ NPLI H+ ++ + Sbjct: 20 DAVCRSLIDGGLVAVPTETVYGLAADATSGTACARIFQAKGRPSFNPLISHLPNLEAARH 79 Query: 73 HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETY 131 H D +L LA+ FWPGPLTLV+ ++I L+TA L T RVP + L E Sbjct: 80 HGVFDDRALKLAEAFWPGPLTLVVPKTKASEISDLATAGLSTVALRVPSGPIMRYLSEIT 139 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 G PLA PSANRSG+IS T + ++ + + + +ID G ++G+ESTI+ + +++V + Sbjct: 140 GRPLAAPSANRSGKISPTRAEDVI-ADLGDALDFVIDAGPCEVGIESTIIGLT-DERVTL 197 Query: 192 LRPGGLEIETLKRAISVELEYCVDET--STPQSPGMLKSHYAPRSQVRLRAIHVNPREAL 249 LRPGGL E ++ + +++ + P +PGML SHYAP +Q+RL A V EAL Sbjct: 198 LRPGGLAREAIESVLQTKVQTAASNSQPEAPAAPGMLTSHYAPNAQMRLHARAVARDEAL 257 Query: 250 IRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGI 309 + FG PI+ + A NLS +G L EAA LF M+ D SGA +I IPN GLG Sbjct: 258 LSFGADPIEGRDEAFAETNLSPSGDLVEAAARLFQAMRTLDSSGAKTIQVQDIPNTGLGE 317 Query: 310 AINNRLERAAAPRN 323 AIN+RL RAAAPR+ Sbjct: 318 AINDRLRRAAAPRD 331 >gi|83945388|ref|ZP_00957736.1| Sua5/YciO/YrdC family protein [Oceanicaulis alexandrii HTCC2633] gi|83851222|gb|EAP89079.1| Sua5/YciO/YrdC family protein [Oceanicaulis alexandrii HTCC2633] Length = 327 Score = 342 bits (879), Expect = 3e-92, Method: Composition-based stats. Identities = 133/321 (41%), Positives = 176/321 (54%), Gaps = 6/321 (1%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 I+S TD AL +A L AG +A+PTETVYGLA D+ N A+ +YE K RP+ NPLIC Sbjct: 12 ILSATDPAALEEAARLLKAGGCVALPTETVYGLACDATNADAVAGVYEAKGRPSFNPLIC 71 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 HV + + +D LA FWPGPLTLV + + + L+ A L + R+P Sbjct: 72 HVDTVERARALIDLDETGEQLADAFWPGPLTLVASKRAPSPVSDLAAAGLDSLAVRLPRS 131 Query: 123 FT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 + L+ PLA PSAN SG IS T +H+ S+ I LI+DGG +G+ESTIV Sbjct: 132 EALRALVSRLDAPLAAPSANASGTISPTTAQHV-KDSLNGRIHLILDGGACPVGVESTIV 190 Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241 ++ + +LRPGG+ E L+ + P +PG L SHYAP + VRL A Sbjct: 191 SLLEPGRPTLLRPGGVAREQLETVCGALGRAGAANQAAPTAPGQLTSHYAPNASVRLNAT 250 Query: 242 HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSS 301 E+ + FG P + I+ NLS G L EAA NLF ++ D + IA + Sbjct: 251 APLAGESYLGFGAQPES---DDIVFFNLSPKGDLVEAATNLFTALRWLDSAS-DRIAVAP 306 Query: 302 IPNHGLGIAINNRLERAAAPR 322 IP GLG AIN+RL RAAA R Sbjct: 307 IPETGLGEAINDRLRRAAAER 327 >gi|217967196|ref|YP_002352702.1| Sua5/YciO/YrdC/YwlC family protein [Dictyoglomus turgidum DSM 6724] gi|217336295|gb|ACK42088.1| Sua5/YciO/YrdC/YwlC family protein [Dictyoglomus turgidum DSM 6724] Length = 338 Score = 342 bits (879), Expect = 4e-92, Method: Composition-based stats. Identities = 108/331 (32%), Positives = 162/331 (48%), Gaps = 21/331 (6%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L+KA + L+ G +A PTETVYGL D+ NP A+++++ K RP NP+I HV Sbjct: 13 DIEVLKKAAQVLEKGGLVAFPTETVYGLGADALNPEAVKKIFIAKGRPPDNPIIVHVGKK 72 Query: 68 SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125 V V ++ L + FWPGPLTL+ + + + TA R P Sbjct: 73 EQVYSLTENVPSIAEKLMEEFWPGPLTLIF--YKSNLVDDVVTAGSPKVGIRQPMNKVAL 130 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 KL+E +G P+A PSAN SG+ S T +H++ + +I +IIDGG G+EST++++ Sbjct: 131 KLLEVFGKPIAAPSANVSGRPSPTKAEHVI-EDLEDKIDIIIDGGDVNFGVESTVLDITT 189 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETST--PQSPGMLKSHYAPRSQVRLRAIHV 243 + + I RPG E ++R I ++ E S SPG+ HYAP+ + + Sbjct: 190 DTPI-IYRPGACPKEEIERVIGKKVMVWNKEKSKEDVPSPGLKYRHYAPKVPLYIVEEFN 248 Query: 244 NPREALI--------RFGNVPIKNIEN----AIISLNLSKTGKLKEAAFNLFNYMKIADD 291 + I + G + K EN I + L E A NLF Y++ + Sbjct: 249 EIWQNKINDWLKEGKKVGVLVSKENENLYSDKIKKYVIGSRKNLTEIALNLFFYLRKLEK 308 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 I S P GLG+A+ +RL RAA + Sbjct: 309 E-VDIIISESFPEEGLGLAVMDRLRRAAGEK 338 >gi|227821231|ref|YP_002825201.1| hypothetical protein NGR_c06550 [Sinorhizobium fredii NGR234] gi|227340230|gb|ACP24448.1| hypothetical protein NGR_c06550 [Sinorhizobium fredii NGR234] Length = 337 Score = 342 bits (879), Expect = 4e-92, Method: Composition-based stats. Identities = 153/323 (47%), Positives = 206/323 (63%), Gaps = 5/323 (1%) Query: 1 MQIMSITDSNA-LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 M I D A + A E L G IA+PTETVYGLA D+ N A+ ++++IK+RP NP Sbjct: 1 MIIDVAADPAAGITSAVEALGRGDVIAVPTETVYGLAADATNEAAVSQIFDIKRRPGFNP 60 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 LICH SD+ MV + A++DP+SL LA+ FWPGP+TLVL+ + ++TA L T R+ Sbjct: 61 LICHCSDLEMVSEFATLDPVSLRLAERFWPGPMTLVLNSNPGR-LPSVTTAGLTTVAIRI 119 Query: 120 PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 P GF+ LI +YG PLA PSAN SG++S T H+ S +PLI+DGG +KIG+EST Sbjct: 120 PMGFSNGLIRSYGGPLAAPSANISGRVSATTAAHV-ESEFGDGVPLILDGGPTKIGVEST 178 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 I+ V+ + +LRPGGL IE ++ A +++ + +PGML SHYAPR+ VRL Sbjct: 179 ILRVRENG-IELLRPGGLPIELVEHAAGLQVS-APNLFRKVLAPGMLTSHYAPRAMVRLN 236 Query: 240 AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF 299 A V P E L++FG+ + NLS G L+E A L+ +K ADD+GA SIA Sbjct: 237 ATGVGPGETLLKFGDAIVPGEGACARVFNLSPEGSLEEFAAKLYATLKEADDAGAESIAI 296 Query: 300 SSIPNHGLGIAINNRLERAAAPR 322 IP+ GLG+AIN+RL RAAAPR Sbjct: 297 VPIPDEGLGLAINDRLRRAAAPR 319 >gi|254512404|ref|ZP_05124471.1| Sua5/YciO/YrdC family protein [Rhodobacteraceae bacterium KLH11] gi|221536115|gb|EEE39103.1| Sua5/YciO/YrdC family protein [Rhodobacteraceae bacterium KLH11] Length = 315 Score = 342 bits (878), Expect = 5e-92, Method: Composition-based stats. Identities = 129/317 (40%), Positives = 174/317 (54%), Gaps = 14/317 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + +A + L GL +A PTETVYGL D+RN A+ +Y+ K RP+ NPLI HV Sbjct: 12 DPAGIARAADLLRQGLLVAFPTETVYGLGGDARNGNAVAAIYQAKGRPSFNPLIAHVDSA 71 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKK 126 ++ + LA FWPGPLTLVL L + L TA L T RVP + Sbjct: 72 QTAQRFVEWSDQAEQLATAFWPGPLTLVLPLREGHGMSSLVTAGLDTLAVRVPAHPTARA 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+ + P+A PSAN SGQIS T H+ + + I ++D G +GLESTIV + + Sbjct: 132 LLAAFDGPVAAPSANPSGQISPTTAAHV-RAGLGGRIAAVLDDGPCGVGLESTIVGLTGD 190 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246 + LRPGG+ +E ++ + +L + +PG ++SHYAP + VRL A Sbjct: 191 PAL--LRPGGVALEQIEDTLQTKLHHH-QSGDLLTAPGQMQSHYAPDAPVRLNARSRRGD 247 Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306 E L+ FG V LNLS++G L EAA NLF + + +G IA S IP+HG Sbjct: 248 EVLLGFGPVACD--------LNLSESGDLPEAASNLFAALHDLNSTG-RPIAVSPIPDHG 298 Query: 307 LGIAINNRLERAAAPRN 323 LG AIN+RL RAAAPR Sbjct: 299 LGAAINDRLRRAAAPRG 315 >gi|323339963|ref|ZP_08080230.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus ruminis ATCC 25644] gi|323092605|gb|EFZ35210.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus ruminis ATCC 25644] Length = 339 Score = 342 bits (878), Expect = 5e-92, Method: Composition-based stats. Identities = 113/336 (33%), Positives = 175/336 (52%), Gaps = 18/336 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I I ++ + KA L G IA PTETVYGL D+ N A++R+Y K RP+ NPL Sbjct: 1 MLITKIYTTDEIEKAANELRLGELIAFPTETVYGLGADATNEQAVKRVYLAKGRPSDNPL 60 Query: 61 ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I VS MV+++ + ++ L FWPGPLT++L + + T L+TA FR+ Sbjct: 61 IVTVSSRKMVEEYVESLPERAVKLMDAFWPGPLTMILKIKEGA-LSKAVTGGLETAAFRM 119 Query: 120 PCGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P KLIE+ G P+ PSAN SG+ S T +H+ + I I+D G +++G+ES Sbjct: 120 PQNKATLKLIESAGVPIVGPSANSSGKPSPTTAQHVY-HDLEGRIAGILDDGPTQVGVES 178 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQ 235 TI+++ E V ILRPG + +E L+ + + ++ V P++PGM HYAP +Q Sbjct: 179 TIIDLSSEHPV-ILRPGAVTVEQLEEVLKETVLSDKHKVGMKEVPKAPGMKYKHYAPDAQ 237 Query: 236 VRLRAIHVNPREALI------RFGNVPIKN-IENAII--SLNLSKTGKLKEAAFNLFNYM 286 V + + L R G + ++NA + L+ S + +A+ LF + Sbjct: 238 VLIVKAGDWDKALLWRKNKQERVGVMAFNEVLKNADLPKKLSYSLGDTVFDASRRLFAGL 297 Query: 287 KIAD-DSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 + D + I + + GLG A NRL+++A Sbjct: 298 RYFDSEEKVDFILCAGVKEAGLGEAYMNRLKKSAGN 333 >gi|116250734|ref|YP_766572.1| Sua5 family protein [Rhizobium leguminosarum bv. viciae 3841] gi|115255382|emb|CAK06457.1| putative Sua5 family protein [Rhizobium leguminosarum bv. viciae 3841] Length = 324 Score = 342 bits (878), Expect = 5e-92, Method: Composition-based stats. Identities = 163/303 (53%), Positives = 204/303 (67%), Gaps = 2/303 (0%) Query: 21 AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80 G IAIPTETVYGLA D+ NP AI R+YE K RP NPLICH++D++M ++HA DPLS Sbjct: 24 NGFAIAIPTETVYGLAADATNPLAIARIYETKGRPRFNPLICHMADLAMAEEHAEFDPLS 83 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSA 140 LAK FWPGPLTLVL L + IH L+TA L + RVP GF LI +G PLA PSA Sbjct: 84 RALAKAFWPGPLTLVLPLKRESPIHSLATAGLDSVGIRVPKGFAGALIGAFGRPLAAPSA 143 Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200 N SG +S T+ H+ + + +IPLI+D G S +G+ESTIV + ++R+LRPGGL Sbjct: 144 NTSGGVSATSAAHV-EADLGAKIPLILDAGPSAVGVESTIVKAEG-GRLRLLRPGGLAAR 201 Query: 201 TLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNI 260 ++R L ++ ++PGML SHYAP + VRL A V P EALI FG+ + Sbjct: 202 EIERIAGQPLLRAKAASAAIEAPGMLASHYAPGASVRLNATAVEPGEALIAFGSAAVSGA 261 Query: 261 ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++A I L+LS G L EAA NLF+YMK AD SGA SIAFS IP GLG AIN+RL+RAAA Sbjct: 262 DSARIVLDLSPHGDLAEAAANLFDYMKRADASGARSIAFSPIPEEGLGEAINDRLQRAAA 321 Query: 321 PRN 323 PR+ Sbjct: 322 PRD 324 >gi|257882294|ref|ZP_05661947.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 1,231,502] gi|293563063|ref|ZP_06677529.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1162] gi|293567647|ref|ZP_06678990.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1071] gi|294623633|ref|ZP_06702471.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium U0317] gi|314937736|ref|ZP_07845058.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX0133a04] gi|314942366|ref|ZP_07849213.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX0133C] gi|314947684|ref|ZP_07851093.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX0082] gi|314952115|ref|ZP_07855134.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX0133A] gi|314992374|ref|ZP_07857806.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX0133B] gi|314997439|ref|ZP_07862386.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX0133a01] gi|257817952|gb|EEV45280.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 1,231,502] gi|291589582|gb|EFF21387.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1071] gi|291596959|gb|EFF28172.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium U0317] gi|291604977|gb|EFF34445.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1162] gi|313588448|gb|EFR67293.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX0133a01] gi|313593099|gb|EFR71944.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX0133B] gi|313595734|gb|EFR74579.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX0133A] gi|313598879|gb|EFR77724.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX0133C] gi|313642874|gb|EFS07454.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX0133a04] gi|313645925|gb|EFS10505.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX0082] Length = 341 Score = 342 bits (877), Expect = 5e-92, Method: Composition-based stats. Identities = 111/338 (32%), Positives = 172/338 (50%), Gaps = 21/338 (6%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ D L++A E L G +A PTETVYGL ++ P A+++++ +K RP NPL Sbjct: 1 METKR-YDETELQEAAEALKEGELVAFPTETVYGLGANALLPNAVKKVFSVKGRPQDNPL 59 Query: 61 ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I HV+ VK++ P + + K FWPGPLTL+ + T + + T L TA FR+ Sbjct: 60 IVHVASFEQVKEYVDNFHPAAEKIVKNFWPGPLTLIFKIKKDT-LPSVVTGGLSTAAFRI 118 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T ++IE G PL PSAN SG+ S T H+ + +I IID G ++IG+ES Sbjct: 119 PDNKKTLEVIELSGVPLVGPSANTSGKPSPTTADHVY-HDLQGKITGIIDDGATRIGVES 177 Query: 179 TIVNVQCEKK-VRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRS 234 T++++ ILRPG + E ++ I + ++ V E TP++PGM HY+P + Sbjct: 178 TVLDLSDPTAMPMILRPGAVTKEQIEAVIESPVAIDQHLVKENETPKAPGMKYKHYSPDT 237 Query: 235 QVRLRAI------HVNPREALIRFGNVPIKNIENAI----ISLNLSKTGKLKEAAFNLFN 284 +V + + IR G + I + + ++ + ++ AA LF Sbjct: 238 RVLMVRDGDWSTAVQWAKNKKIRAGVIASPEIADQVRTDTAAVYMYNDNSVEAAAKGLFA 297 Query: 285 YMKIADD--SGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ D+ G I P GLG A NRL++AA Sbjct: 298 GLRGLDEPTLGLDLIFVQVYPETGLGNAYMNRLKKAAG 335 >gi|293378552|ref|ZP_06624715.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium PC4.1] gi|292642881|gb|EFF61028.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium PC4.1] Length = 341 Score = 342 bits (877), Expect = 5e-92, Method: Composition-based stats. Identities = 110/338 (32%), Positives = 172/338 (50%), Gaps = 21/338 (6%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ D L++A + L AG +A PTETVYGL ++ P +++++ +K RP NPL Sbjct: 1 METKR-YDETELKEAAKALKAGELVAFPTETVYGLGANALLPNTVKKVFSVKGRPQDNPL 59 Query: 61 ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I HV+ VK++ P + + K FWPGPLTL+ + T + + T L TA FR+ Sbjct: 60 IVHVASFEQVKEYVDNFHPETEKIVKNFWPGPLTLIFKIKKDT-LPSVVTGGLSTAAFRM 118 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T ++IE G PL PSAN SG+ S T H+ + +I IID G ++IG+ES Sbjct: 119 PDNKKTLEVIELSGVPLVGPSANTSGKPSPTTADHVF-HDLQGKITGIIDDGATRIGVES 177 Query: 179 TIVNVQCEKK-VRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRS 234 T++++ ILRPG + E ++ I + ++ V E TP++PGM HY+P + Sbjct: 178 TVLDLSDPTAMPMILRPGAVTKEQIEAVIESPVAIDQHLVKENETPKAPGMKYKHYSPDT 237 Query: 235 QVRLR------AIHVNPREALIRFGNVPIKNIENAI----ISLNLSKTGKLKEAAFNLFN 284 +V + + IR G + I + + ++ + ++ AA LF Sbjct: 238 RVLMVREGDWSTAVQWAKNKKIRVGVIASPEISDQVRTDTAAVYMYNDNSVEAAAKGLFA 297 Query: 285 YMKIADD--SGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ D+ G I P GLG A NRL++AA Sbjct: 298 GLRGLDEPTLGLDLIFVQVYPETGLGNAYMNRLKKAAG 335 >gi|125975078|ref|YP_001038988.1| translation factor SUA5 [Clostridium thermocellum ATCC 27405] gi|281418504|ref|ZP_06249523.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium thermocellum JW20] gi|125715303|gb|ABN53795.1| translation factor SUA5 [Clostridium thermocellum ATCC 27405] gi|281407588|gb|EFB37847.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium thermocellum JW20] Length = 351 Score = 342 bits (877), Expect = 5e-92, Method: Composition-based stats. Identities = 115/346 (33%), Positives = 171/346 (49%), Gaps = 30/346 (8%) Query: 2 QIMSI----TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 +I+ I D+ ++ A E L G +A PTETVYGL D+ + A+++++E K RP+ Sbjct: 4 EILKIQSDNIDNEKIKYAAEVLRGGGLVAFPTETVYGLGADALDENAVKKIFEAKGRPSD 63 Query: 58 NPLICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 NPLI H++ V A+V P + L FWPGPLTLVL+ + I + TA L T Sbjct: 64 NPLIVHIAGKEDVYGLAANVPPKAQILMDRFWPGPLTLVLE--KSDKIPSVITAGLSTVG 121 Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R P LI G P+A PSAN SG+ S T KH++ + + +IIDGG + IG Sbjct: 122 LRAPSHPIALALIREAGIPIAAPSANLSGRPSPTVPKHVI-DDLYGRVDVIIDGGNANIG 180 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAI-----SVELEYCVDETSTPQSPGMLKSHY 230 +EST+++V + V ILRPGG+ E LK + L P++PGM +HY Sbjct: 181 VESTVLDVTADVPV-ILRPGGVSFEQLKDVLKNVTMDPSLMKKPAGDFVPKAPGMKYTHY 239 Query: 231 APRSQVRLRAIHVNPREALIR---------------FGNVPIKNIENAIISLNLSKTGKL 275 +P++ V + I K ++ S+ L + Sbjct: 240 SPKADVIVVEGEPEKVAEKINSLIAEYQSKNIPVGVLATEQTKEFYKSVPSITLGDRLEP 299 Query: 276 KEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 + A NLF + DD G I +I N G+G+A+ NR+++AA Sbjct: 300 ETIAANLFKAFRDFDDIGIKVIFAEAIDNQGIGLAVMNRMKKAAGY 345 >gi|328957993|ref|YP_004375379.1| putative ribosome maturation factor; RNA binding protein [Carnobacterium sp. 17-4] gi|328674317|gb|AEB30363.1| putative ribosome maturation factor; RNA binding protein [Carnobacterium sp. 17-4] Length = 329 Score = 342 bits (877), Expect = 6e-92, Method: Composition-based stats. Identities = 101/325 (31%), Positives = 163/325 (50%), Gaps = 19/325 (5%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 KA + + G I+ PTETVYGL D+ N A++++Y K RP+ NPLI HVS I V+++ Sbjct: 3 KAAQKIQQGELISFPTETVYGLGADATNEAAVKKVYSAKGRPSDNPLIVHVSTIEEVEQY 62 Query: 74 A-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY 131 V ++ L + FWPGPLTL+ + P TA L + R+P T +LI Sbjct: 63 VQEVPEVAKKLMQTFWPGPLTLIFKVKDHV-FAPTVTAGLASVAMRMPDNEVTLQLIRKS 121 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 G PL PSAN SG+ S T H+ + +I ++D G + +GLEST++++ K I Sbjct: 122 GKPLVGPSANTSGKPSPTTADHVY-HDLKGKIAGVLDDGDTGLGLESTVLDITDPKLPTI 180 Query: 192 LRPGGLEIETLKRAISV--ELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREAL 249 LRPG E L++ I + + P++PGM HY+P V + + Sbjct: 181 LRPGATTKEALEKVIGTVFVDRHLISNDEVPKAPGMKYKHYSPNEPVVIVVGESEIWQKA 240 Query: 250 I--------RFGNVPIKNIENAI-----ISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296 I + G + +++ N + +L + + +A+ L++ ++ + + A+ Sbjct: 241 IKTYQKQGEKIGLLANQDLLNQFQDTVTATYSLGENKNIHDASRRLYSGLRYFETTDATL 300 Query: 297 IAFSSIPNHGLGIAINNRLERAAAP 321 I + GLG A NRL++AA Sbjct: 301 ILAEAHEQKGLGEAYMNRLQKAAGN 325 >gi|325291370|ref|YP_004267551.1| translation factor SUA5 [Syntrophobotulus glycolicus DSM 8271] gi|324966771|gb|ADY57550.1| translation factor SUA5 [Syntrophobotulus glycolicus DSM 8271] Length = 368 Score = 342 bits (877), Expect = 6e-92, Method: Composition-based stats. Identities = 116/341 (34%), Positives = 168/341 (49%), Gaps = 31/341 (9%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 N L++A + + AG +A PTETVYGL D+ NP A ++++K RPA NPLI HV+D+ Sbjct: 26 ENELKEAAQLIKAGNLVAFPTETVYGLGADALNPRACAEIFKVKGRPADNPLILHVADLE 85 Query: 69 MVKKHASVDPLSLHL-AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 ++ S + A FWPGPLT+VL I + + LKT FR+P Sbjct: 86 EARRLTSFWNDKAEICAGAFWPGPLTMVLP--KAEFIPDVISGGLKTVAFRMPDHPVALS 143 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LI G PLA PSAN SG+ S T+ +H+ + IPL+ID G IGLEST++++ E Sbjct: 144 LIRLSGCPLAAPSANLSGKPSPTDGEHVW-QDLQGRIPLMIDAGKCAIGLESTVLDLSEE 202 Query: 187 KKVRILRPGGLEIETLKRAIS-VELEYCVDETST----PQSPGMLKSHYAPRSQVRLRAI 241 V ILRPGG+ E L+ + VE++ + E +T P++PGM HYAP +V L + Sbjct: 203 IPV-ILRPGGITREQLEEVLGKVEVDPFLTEMNTENIVPKAPGMKYRHYAPEGEVHLLSG 261 Query: 242 HVNPREALIRFGNVPIKNIENAI--------------------ISLNLSKTGKLKEAAFN 281 + IR G + + +AA Sbjct: 262 DGSEVLQEIREGLAEYAATPKKALLCLRETEEMLQDEEKKKLELIFVMGARTNPGKAARR 321 Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 L+ +++ D I +P G+G+A NRL +AA R Sbjct: 322 LYEGLRLCDRQNMEMIFVEGMPAEGIGLAFMNRLRKAAGKR 362 >gi|307941534|ref|ZP_07656889.1| protein SUA5 [Roseibium sp. TrichSKD4] gi|307775142|gb|EFO34348.1| protein SUA5 [Roseibium sp. TrichSKD4] Length = 329 Score = 341 bits (876), Expect = 7e-92, Method: Composition-based stats. Identities = 134/317 (42%), Positives = 180/317 (56%), Gaps = 4/317 (1%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D+ L L AG + +PTETVYGLA D+ NP A R++E K RP NPLI H + Sbjct: 15 DTAMLSTVSTALKAGDLVGVPTETVYGLAADASNPEACARIFEAKGRPQFNPLISHADTL 74 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKK 126 ++H + + LA FWPGPLTLVL T+ I L+TA L + RVP + Sbjct: 75 ETARQHGVFNAKADRLAAAFWPGPLTLVLPKRETSSISDLATAGLDSVALRVPAGAVMRA 134 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L G PLA PSAN SG+IS T ++ + + + +ID G +G+ESTI+ + Sbjct: 135 LAAETGCPLAAPSANLSGKISATTADDVI-ADLGSSVAHVIDAGPCPVGVESTIIACI-D 192 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETST-PQSPGMLKSHYAPRSQVRLRAIHVNP 245 +VR+LRPGG+ E ++ + L+ T PQ+PGML SHYAP ++VRL A HV Sbjct: 193 DQVRLLRPGGVPAEDIECVLGHPLDVVRAANDTNPQAPGMLTSHYAPGARVRLEADHVEA 252 Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305 EAL+ FG + + A NLS+ G L+EAA LF ++ D S A ++ IP Sbjct: 253 GEALLAFGPASLPGADTANAVFNLSENGDLREAATRLFAGLRALDASKAQTVCVQHIPQE 312 Query: 306 GLGIAINNRLERAAAPR 322 GLG AIN+RL RAAAPR Sbjct: 313 GLGAAINDRLRRAAAPR 329 >gi|315283702|ref|ZP_07871810.1| protein Sua5 [Listeria marthii FSL S4-120] gi|313612655|gb|EFR86689.1| protein Sua5 [Listeria marthii FSL S4-120] Length = 315 Score = 341 bits (876), Expect = 7e-92, Method: Composition-based stats. Identities = 112/317 (35%), Positives = 164/317 (51%), Gaps = 19/317 (5%) Query: 26 AIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLSLHLA 84 A PTETVYGL D+ N AI+++Y K RP+ NPLI H+ + AS P +L L Sbjct: 2 AFPTETVYGLGADATNQAAIQKIYAAKGRPSDNPLIVHIGRREQMDSFVASYPPKALQLM 61 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPLAIPSANRS 143 + FWPGPLT++L L + + +A L T R+P +LI+ P+A PSANRS Sbjct: 62 EKFWPGPLTVILPLKKDS-LAANVSAGLSTVGVRMPEHPVSLELIKAANIPVAAPSANRS 120 Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203 G+ S T H++ + +I IIDGG + +GLEST+++ E + ILRPGG+ E ++ Sbjct: 121 GKPSPTTANHVI-EDLDGKIAGIIDGGPTGVGLESTVIDCSLEMPI-ILRPGGITKEQIE 178 Query: 204 RAISVELEY--CVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALI--------RFG 253 R I ET P++PGM +HYAP++ V L ++ I + G Sbjct: 179 RVIGPVDSSSNSTTETEKPKAPGMKYTHYAPKAPVYLIEGSTEFWQSEINKAEAAHKKIG 238 Query: 254 NVPIKNIENAIISLNL----SKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGI 309 + K + + + + + L E A NL+N ++ D + I P LG Sbjct: 239 ILATKELTDKLTTSAVIQTTGSIDALDEVATNLYNGLRAFDHADVELIFAEVYPETELGA 298 Query: 310 AINNRLERAAAPRNQSQ 326 AI NRLE+AA R S+ Sbjct: 299 AIMNRLEKAAGNRRISE 315 >gi|110680589|ref|YP_683596.1| Sua5/YciO/YrdC family protein [Roseobacter denitrificans OCh 114] gi|109456705|gb|ABG32910.1| Sua5/YciO/YrdC family protein [Roseobacter denitrificans OCh 114] Length = 314 Score = 341 bits (876), Expect = 7e-92, Method: Composition-based stats. Identities = 126/315 (40%), Positives = 173/315 (54%), Gaps = 15/315 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A + L G +A PTETVYGL D+RN A+ ++E K RP+ NPLI HV D + Sbjct: 13 PDGIAQAADLLRTGALVAFPTETVYGLGADARNGRAVATVFEAKGRPSFNPLIVHVHDAT 72 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127 ++ + LA FWPGP++LVL L + L TA L T RVP + L Sbjct: 73 QARRFCHWSDSAEKLATAFWPGPVSLVLPLREEHGLSSLVTAGLPTVALRVPAHPAARAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + + P+A PSAN SG+IS T +H+ + + ++ I+D G +GLESTIV + + Sbjct: 133 LRAFDGPVAAPSANPSGKISPTTARHV-AEGLGTKVAAILDDGPCSVGLESTIVGL--DA 189 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 +LRPGGL E ++R + L + +PG L SHYAP VRL A E Sbjct: 190 APCLLRPGGLPAEEIERVLGQTLSRATEG--KISAPGQLVSHYAPDGHVRLNATSAQAGE 247 Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307 L+ FG++ LNLS+ G L EAA LF + D +G +IA + IP HGL Sbjct: 248 VLLGFGHM--------DCDLNLSRDGDLTEAASALFESLHQLDATG-KAIAVAPIPQHGL 298 Query: 308 GIAINNRLERAAAPR 322 G AIN+RL RAAAPR Sbjct: 299 GAAINDRLRRAAAPR 313 >gi|295092488|emb|CBK78595.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium cf. saccharolyticum K10] Length = 377 Score = 341 bits (876), Expect = 8e-92, Method: Composition-based stats. Identities = 111/336 (33%), Positives = 166/336 (49%), Gaps = 26/336 (7%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L +A L G +A PTETVYGL ++ + TA RR+YE K RP+ NPLI H++D Sbjct: 41 DRAVLAEAAAILREGGLVAFPTETVYGLGANALDETAARRIYEAKGRPSDNPLIAHIADF 100 Query: 68 SMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125 + A + LA+ FWPGPLT+V + + +T L+T R+P + Sbjct: 101 EALAPLTAEIPEAGRKLAEAFWPGPLTMVF--KKSGVVPHGTTGGLETVAVRMPSDPVAR 158 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +LI G P+A PSAN SG+ S T +H+L + +I +I+DGG IG+ESTIV+V Sbjct: 159 ELIRLAGVPIAAPSANTSGRPSPTRAEHVL-QDMDGKIEMIVDGGPVGIGVESTIVDVT- 216 Query: 186 EKKVRILRPGGLEIETLKRAIS-----VELEYCVDETSTPQSPGMLKSHYAPRSQV---- 236 E+ +LRPG + +E L+ + + + P++PGM HYAP++ + Sbjct: 217 EEIPTLLRPGAVTMEMLRSVLGETAVDPAITGPMRADIKPKAPGMKYRHYAPKADLTLVE 276 Query: 237 --------RLRAIHVNPREALIRFGNVPIKNIEN---AIISLNLSKTGKLKEAAFNLFNY 285 R+ A+ A R G + + ++ A I ++ A NL+ Sbjct: 277 GETDAVVSRINALAAEKLGAGQRVGIICTEETKDRYPAGILKSIGMRANEATVAHNLYAV 336 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 ++ DD I S LG AI NRL +AA Sbjct: 337 LREFDDLEVDCIFSESFQTDDLGQAIMNRLNKAAGY 372 >gi|260752549|ref|YP_003225442.1| Sua5/YciO/YrdC/YwlC family protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258551912|gb|ACV74858.1| Sua5/YciO/YrdC/YwlC family protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 329 Score = 341 bits (876), Expect = 8e-92, Method: Composition-based stats. Identities = 128/324 (39%), Positives = 186/324 (57%), Gaps = 11/324 (3%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 I+ DS + KA + + G P+ +PTETVYGLA D+ + A+ R+Y+ K RP+ NPLI Sbjct: 11 IILPCDSKGIEKAVQLIRGGYPVGLPTETVYGLAADAFSGEAVARIYQAKGRPSFNPLIV 70 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 H++ I + + +L LA+ FWPG LT+VL L I + TA L T R+P Sbjct: 71 HIAHIEQAAEIVEFNDEALSLAQKFWPGALTMVLPLKKDAKIASIVTAGLDTVAIRMPSH 130 Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 +++I+ +GHPLA PSAN+SG IS T H+ S+ +I ++DGGI+ GLESTI+ Sbjct: 131 PVMRQVIKAFGHPLAAPSANKSGSISPTTALHV-KESLNGKIAAVLDGGIADKGLESTII 189 Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241 V ++++LRPG + E L ++ + + + P +PG L SHYAP VRL Sbjct: 190 YV-GADEIKLLRPGPITSEELAQSSHLPITEYKADGQNPVAPGQLVSHYAPSQPVRLNIS 248 Query: 242 HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSS 301 E LI FG++ + NLS +G L EAA +LF+ + + S IA + Sbjct: 249 QKEADEWLIGFGDIAGDD--------NLSPSGDLTEAAAHLFSALHRGEKSAYPRIAIAP 300 Query: 302 IPNHGLGIAINNRLERAAAPRNQS 325 IP G+G AIN+RL RAAAPR++ Sbjct: 301 IPLEGIGKAINDRLGRAAAPRDEQ 324 >gi|322804412|emb|CBZ01962.1| sua5 YciO YrdC YwlC family protein [Clostridium botulinum H04402 065] Length = 351 Score = 341 bits (876), Expect = 8e-92, Method: Composition-based stats. Identities = 93/337 (27%), Positives = 162/337 (48%), Gaps = 26/337 (7%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 D + + +A + L G + PTETVYGL ++ + A++ ++E K RP NPLI H+S Sbjct: 13 IDEHVISEAGDILRQGGLVVFPTETVYGLGANALDKNAVKGIFEAKGRPQDNPLIVHISK 72 Query: 67 ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 I + + + P++ L FWPGP+T++L I ++A L + R+P Sbjct: 73 IKDIDELVKKIPPIAEKLMDKFWPGPMTIIL--KKKDIIPNETSAGLDSIGIRMPSNKIA 130 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 +LI G P+A PSAN SG+ S T+++ + + + +I+ G S++G+EST+++ Sbjct: 131 MELISMAGVPIAAPSANLSGKPSPTDIETCI-EDLDGRVNMILGGDNSEVGVESTVIDCT 189 Query: 185 CEKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 ILRPGG+ +E +K I + D+ P++PGM HYAP++ +++ Sbjct: 190 IN-PPCILRPGGITLEMVKEVDSNIYIDPAIMKKPDKDLKPKAPGMKYRHYAPKAPLKII 248 Query: 240 AIHVNPREALI------------RFGNVPIKNI---ENAIISLNLSKTGKLKEAAFNLFN 284 +N I + G + +++ L A NLF Sbjct: 249 KGDLNKTIEKINEMVQNYIDAEKKVGIIATDETIDNYKKGDVVSIGSRKDLNTIAHNLFY 308 Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 ++ D+ I + +G+AI NRL+++A Sbjct: 309 VLRSFDEKNVDLILSEAFEEKDIGVAIMNRLKKSAGY 345 >gi|220922794|ref|YP_002498096.1| Sua5/YciO/YrdC/YwlC family protein [Methylobacterium nodulans ORS 2060] gi|219947401|gb|ACL57793.1| Sua5/YciO/YrdC/YwlC family protein [Methylobacterium nodulans ORS 2060] Length = 335 Score = 341 bits (876), Expect = 8e-92, Method: Composition-based stats. Identities = 132/316 (41%), Positives = 181/316 (57%), Gaps = 3/316 (0%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D+ L +A L G +A PTETVYGL D+ N A+ +Y K+RP NPLI H+ D+ Sbjct: 22 DAAGLAEAARLLREGRLVAFPTETVYGLGGDATNGAAVAGIYAAKERPRFNPLIAHLPDL 81 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + ++ + P +L LA+ FWPGPLTLV+ + L+ A L + RVP + Sbjct: 82 AAARREGAFGPEALRLAETFWPGPLTLVVPRAEDACVCDLALAGLDSVALRVPAARLARD 141 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+ G P+A PSANRSG++S TN H+L + I ++DGG +G+ESTIV Sbjct: 142 LLRAVGRPVAAPSANRSGRVSPTNADHVLGD-LDGRIAAVLDGGACPVGVESTIVACLDG 200 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246 ++LRPGG+ E ++ + L P +PG+L SHYAPR+ VRL A + Sbjct: 201 DP-QLLRPGGVPREAIEAVLGRPLRAPGAAGEAPVAPGLLASHYAPRAAVRLDAAAIGED 259 Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306 EA + FG + A LNLS +G L EAA NLF+ ++ D SGA++IA IP HG Sbjct: 260 EAALLFGEARPAGLARARFILNLSPSGDLAEAAANLFSMLRRLDASGAATIAVMPIPRHG 319 Query: 307 LGIAINNRLERAAAPR 322 LG AI +RL RAAAPR Sbjct: 320 LGEAIADRLARAAAPR 335 >gi|188583774|ref|YP_001927219.1| Sua5/YciO/YrdC/YwlC family protein [Methylobacterium populi BJ001] gi|179347272|gb|ACB82684.1| Sua5/YciO/YrdC/YwlC family protein [Methylobacterium populi BJ001] Length = 329 Score = 341 bits (875), Expect = 9e-92, Method: Composition-based stats. Identities = 130/316 (41%), Positives = 180/316 (56%), Gaps = 3/316 (0%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D++ L +A + AG +A+PTETVYGL D+ +P A+ +Y K RP NPLI HV+ + Sbjct: 16 DADGLARAAALIGAGRLVALPTETVYGLGADATDPEAVAAIYAAKGRPRFNPLIAHVATV 75 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKK 126 + D +L LA+ FWPGPLTLV+ ST + L+ A L + RVP + Sbjct: 76 EAALGEGTFDEAALRLAEHFWPGPLTLVVPAASTGSVCDLARAGLDSVALRVPAHATARA 135 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+E G P+A PSANRSG++S T+ H+L+ + I ++DGG +G+ES++V Sbjct: 136 LLERVGRPVAAPSANRSGRVSPTSADHVLTD-LDGRIAAVLDGGACPVGVESSVVACLG- 193 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246 R+LRPGG+ + + E D S P PG+L SHYAPR+ VRL A + P Sbjct: 194 GPPRLLRPGGVTRAAIAAVLGFAPEAGGDPGSRPVGPGLLASHYAPRAGVRLDATGLEPG 253 Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306 EA++ FG ++ A LS G EAA LF ++ D SGA +IA +P G Sbjct: 254 EAVLLFGAFRPAGLDRAAAVETLSARGDPAEAAARLFGALRRLDASGAPTIAVVPVPEEG 313 Query: 307 LGIAINNRLERAAAPR 322 LG AIN+RL RAAAPR Sbjct: 314 LGEAINDRLRRAAAPR 329 >gi|56551895|ref|YP_162734.1| Sua5/YciO/YrdC/YwlC family protein [Zymomonas mobilis subsp. mobilis ZM4] gi|56543469|gb|AAV89623.1| Sua5/YciO/YrdC/YwlC family protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 329 Score = 341 bits (875), Expect = 9e-92, Method: Composition-based stats. Identities = 128/324 (39%), Positives = 186/324 (57%), Gaps = 11/324 (3%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 I+ DS + KA + + G P+ +PTETVYGLA D+ + A+ R+Y+ K RP+ NPLI Sbjct: 11 IILPCDSKGIEKAVQLIRGGYPVGLPTETVYGLAADAFSGEAVARIYQAKGRPSFNPLIV 70 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 H++ I + + +L LA+ FWPG LT+VL L I + TA L T R+P Sbjct: 71 HIAHIEQAAEIVEFNDEALSLAQKFWPGALTMVLPLKKDAKIASIVTAGLDTVAIRMPSH 130 Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 +++I+ +GHPLA PSAN+SG IS T H+ S+ +I ++DGGI+ GLESTI+ Sbjct: 131 PVMRQVIKAFGHPLAAPSANKSGSISPTTALHV-KESLNGKIAAVLDGGIADKGLESTII 189 Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241 V ++++LRPG + E L ++ + + + P +PG L SHYAP VRL Sbjct: 190 YV-GADEIKLLRPGPITSEELAQSSPLPITEYKADGQNPVAPGQLVSHYAPSQPVRLNIS 248 Query: 242 HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSS 301 E LI FG++ + NLS +G L EAA +LF+ + + S IA + Sbjct: 249 QKEADEWLIGFGDIAGDD--------NLSPSGDLTEAAAHLFSALHRGEKSAYPRIAIAP 300 Query: 302 IPNHGLGIAINNRLERAAAPRNQS 325 IP G+G AIN+RL RAAAPR++ Sbjct: 301 IPLEGIGKAINDRLGRAAAPRDEQ 324 >gi|241761788|ref|ZP_04759874.1| Sua5/YciO/YrdC/YwlC family protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373702|gb|EER63262.1| Sua5/YciO/YrdC/YwlC family protein [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 329 Score = 341 bits (875), Expect = 1e-91, Method: Composition-based stats. Identities = 127/324 (39%), Positives = 186/324 (57%), Gaps = 11/324 (3%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 I+ DS + KA + + G P+ +PTETVYGLA D+ + A+ R+Y+ K RP+ NPLI Sbjct: 11 IILPCDSKGIEKAVQLIRGGYPVGLPTETVYGLAADAFSGEAVARIYQAKGRPSFNPLIV 70 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 H++ I + + +L LA+ FWPG LT+VL L I + TA L T R+P Sbjct: 71 HIAHIEQAAEIVEFNDEALSLAQKFWPGALTMVLPLKKDAKIASIVTAGLDTVAIRMPSH 130 Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 +++I+ +GHPLA PSAN+SG IS T H+ S+ +I ++DGGI+ GLESTI+ Sbjct: 131 PVMRQVIKAFGHPLAAPSANKSGSISPTTALHV-KESLNGKIAAVLDGGIADKGLESTII 189 Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241 + ++++LRPG + E L ++ + + + P +PG L SHYAP VRL Sbjct: 190 YI-GADEIKLLRPGPITSEELAQSSHLPITEYKADGQNPVAPGQLVSHYAPSQPVRLNIS 248 Query: 242 HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSS 301 E LI FG++ + NLS +G L EAA +LF+ + + S IA + Sbjct: 249 QKEADEWLIGFGDIAGDD--------NLSPSGDLTEAAAHLFSALHRGEKSAYPRIAIAP 300 Query: 302 IPNHGLGIAINNRLERAAAPRNQS 325 IP G+G AIN+RL RAAAPR++ Sbjct: 301 IPLEGIGKAINDRLGRAAAPRDEQ 324 >gi|227552471|ref|ZP_03982520.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX1330] gi|227178383|gb|EEI59355.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX1330] Length = 341 Score = 341 bits (875), Expect = 1e-91, Method: Composition-based stats. Identities = 110/338 (32%), Positives = 171/338 (50%), Gaps = 21/338 (6%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ D L++A + L AG +A PTETVYGL ++ P +++++ +K RP NPL Sbjct: 1 METKR-YDETELKEAAKALKAGELVAFPTETVYGLGANALLPNTVKKVFSVKGRPQDNPL 59 Query: 61 ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I HV+ VK++ P + + K FWPGPLTL+ + T + + T L TA FR+ Sbjct: 60 IVHVASFEQVKEYVDNFHPETEKIVKNFWPGPLTLIFKIKKDT-LPSVVTGGLSTAAFRM 118 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T ++IE G PL PSAN SG+ S T H+ + +I IID G ++IG+ES Sbjct: 119 PDNKKTLEVIELSGVPLVGPSANTSGKPSPTTADHVF-HDLQGKITGIIDDGATRIGVES 177 Query: 179 TIVNVQCEKK-VRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRS 234 T++++ ILRPG + E ++ I + ++ V E TP++PGM HY+P + Sbjct: 178 TVLDLSDPTAMPMILRPGAVTKEQIEAVIESPVAIDQHLVKENETPKAPGMKYKHYSPDT 237 Query: 235 QVRLR------AIHVNPREALIRFGNVPIKNIENAI----ISLNLSKTGKLKEAAFNLFN 284 V + + IR G + I + + ++ + ++ AA LF Sbjct: 238 CVLMVREGDWSTAVQWAKNKKIRVGVIASPEISDQVRTDTAAVYMYNDNSVEAAAKGLFA 297 Query: 285 YMKIADD--SGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ D+ G I P GLG A NRL++AA Sbjct: 298 GLRGLDEPTLGLDLIFVQVYPETGLGNAYMNRLKKAAG 335 >gi|153938602|ref|YP_001389505.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum F str. Langeland] gi|152934498|gb|ABS39996.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum F str. Langeland] gi|295317606|gb|ADF97983.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum F str. 230613] Length = 351 Score = 340 bits (874), Expect = 1e-91, Method: Composition-based stats. Identities = 93/337 (27%), Positives = 162/337 (48%), Gaps = 26/337 (7%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 D + + +A + L G + PTETVYGL ++ + A++ ++E K RP NPLI H+S Sbjct: 13 IDEHVISEAGDILRQGGLVVFPTETVYGLGANALDKNAVKGIFEAKGRPQDNPLIVHISK 72 Query: 67 ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 I + + + P++ L FWPGP+T++L I ++A L + R+P Sbjct: 73 IKDIDELVKKIPPIAEKLMDKFWPGPMTIIL--KKKDIIPNETSAGLDSIGIRMPSNKIA 130 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 +LI G P+A PSAN SG+ S T+++ + + + +I+ G S++G+EST+++ Sbjct: 131 MELISMAGVPIAAPSANLSGKPSPTDIETCI-EDLDGRVNMILGGDNSEVGVESTVIDCT 189 Query: 185 CEKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 ILRPGG+ +E +K I + D+ P++PGM HYAP++ +++ Sbjct: 190 IN-PPCILRPGGITLEMVKEVDSNIYIDPAIMKKPDKDLKPKAPGMKYRHYAPKAPLKII 248 Query: 240 AIHVNPREALI------------RFGNVPIKNI---ENAIISLNLSKTGKLKEAAFNLFN 284 +N I + G + +++ L A NLF Sbjct: 249 KGDLNKTIEKINEMVQNYIDAEKKVGIIATDETIDNYKKGDVVSIGSRKDLNTIAHNLFY 308 Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 ++ D+ I + +G+AI NRL+++A Sbjct: 309 VLRSFDEKNVDLILSEAFEEKDMGVAIMNRLKKSAGY 345 >gi|293571482|ref|ZP_06682509.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E980] gi|291608487|gb|EFF37782.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E980] Length = 341 Score = 340 bits (874), Expect = 1e-91, Method: Composition-based stats. Identities = 109/338 (32%), Positives = 172/338 (50%), Gaps = 21/338 (6%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ D L++A + L AG +A PTETVYGL ++ P +++++ +K RP NPL Sbjct: 1 METKR-YDETELKEAAKALKAGELVAFPTETVYGLGANALLPNTVKKVFSVKGRPQDNPL 59 Query: 61 ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I HV+ VK++ P + + K FWPGPLTL+ + T + + T L TA FR+ Sbjct: 60 IVHVASFEQVKEYVDNFHPETEKIVKNFWPGPLTLIFKIKKDT-LPSVVTGGLSTAAFRM 118 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T ++IE G PL PSAN SG+ S T H+ + +I II+ G ++IG+ES Sbjct: 119 PDNKKTLEVIELSGVPLVGPSANTSGKPSPTTADHVF-HDLQGKITGIIEDGATRIGVES 177 Query: 179 TIVNVQCEKK-VRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRS 234 T++++ ILRPG + E ++ I + ++ V E TP++PGM HY+P + Sbjct: 178 TVLDLSNPTAMPMILRPGAVTKEQIEAVIGSPVAVDQHLVKENETPKAPGMKYKHYSPDT 237 Query: 235 QVRLRAI------HVNPREALIRFGNVPIKNIENAI----ISLNLSKTGKLKEAAFNLFN 284 +V + + IR G + I + + ++ + ++ AA LF Sbjct: 238 RVLMVRDSDWSIAVQWAKNKKIRAGVIASPEIADQVRTDTAAVYMYNDNSVEAAAKGLFA 297 Query: 285 YMKIADD--SGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ D+ G I P GLG A NRL++AA Sbjct: 298 GLRGLDEPTLGLDLIFVQVYPETGLGNAYMNRLKKAAG 335 >gi|256003268|ref|ZP_05428260.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium thermocellum DSM 2360] gi|255992959|gb|EEU03049.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium thermocellum DSM 2360] gi|316939243|gb|ADU73277.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium thermocellum DSM 1313] Length = 351 Score = 340 bits (874), Expect = 1e-91, Method: Composition-based stats. Identities = 115/346 (33%), Positives = 171/346 (49%), Gaps = 30/346 (8%) Query: 2 QIMSI----TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 +I+ I D+ ++ A E L G +A PTETVYGL D+ + A+++++E K RP+ Sbjct: 4 EILKIQSDNIDNEKIKYAAEVLRGGGLVAFPTETVYGLGADALDENAVKKIFEAKGRPSD 63 Query: 58 NPLICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 NPLI H++ V A+V P + L FWPGPLTLVL+ + I + TA L T Sbjct: 64 NPLIVHIAGKEDVYGLAANVPPKAQILMDRFWPGPLTLVLE--KSDKIPSVITAGLSTVG 121 Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R P LI G P+A PSAN SG+ S T KH++ + + +IIDGG + IG Sbjct: 122 LRAPSHPIALALIREAGIPIAAPSANLSGRPSPTVPKHVI-DDLYDRVDVIIDGGNANIG 180 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAI-----SVELEYCVDETSTPQSPGMLKSHY 230 +EST+++V + V ILRPGG+ E LK + L P++PGM +HY Sbjct: 181 VESTVLDVTADVPV-ILRPGGVSFEQLKDVLKNVAMDPSLMKKPAGDFVPKAPGMKYTHY 239 Query: 231 APRSQVRLRAIHVNPREALIR---------------FGNVPIKNIENAIISLNLSKTGKL 275 +P++ V + I K ++ S+ L + Sbjct: 240 SPKADVIVVEGEPEKVAEKINSLIAEYQSKNIPVGVLATEQTKEFYKSVPSITLGDRLEP 299 Query: 276 KEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 + A NLF + DD G I +I N G+G+A+ NR+++AA Sbjct: 300 ETIAANLFKAFRDFDDIGIKVIFAEAIDNQGIGLAVMNRMKKAAGY 345 >gi|150015296|ref|YP_001307550.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium beijerinckii NCIMB 8052] gi|149901761|gb|ABR32594.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium beijerinckii NCIMB 8052] Length = 343 Score = 340 bits (874), Expect = 1e-91, Method: Composition-based stats. Identities = 108/335 (32%), Positives = 163/335 (48%), Gaps = 27/335 (8%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D +R+A E + G + PTETVYGL D+ N A+ ++++ K RP NPLI HVS Sbjct: 8 DEEKIREAAECIKNGGTVVFPTETVYGLGADALNEEAVEKIFKAKGRPQDNPLIIHVSS- 66 Query: 68 SMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + +A P ++ L FWPGPLT++L I +++ANL + R+P + Sbjct: 67 KKLDLYAKEIPKVADELINRFWPGPLTIILS--KKDIIPNVTSANLNSIGIRMPDNEVAR 124 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 KLIE +A PSAN SG+ S T+ + + + ++ I+ G S IG+ESTIV+ Sbjct: 125 KLIELSQTTIAAPSANISGRPSPTDFQRCI-EDLDGKVDYILGGEQSDIGVESTIVDCTV 183 Query: 186 EKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 + +LRPGG+ +E L+ I + E P++PGM HYAP ++V + + Sbjct: 184 VPPI-VLRPGGITLEMLREVDPRIEIDKAIMEKPSENLKPKAPGMKYKHYAPNAKVTIIS 242 Query: 241 IHVNPREALIR---------FGNVPIKNIENAI------ISLNLSKTGKLKEAAFNLFNY 285 IR V I +E + S+ L L A +LF Sbjct: 243 GERKKTIEKIREMVHYNIEKGKKVCILTVEENVDEYTEGTSIVLGSLSDLSTVARSLFEA 302 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ DD GA + G+G+AI NRL +AA Sbjct: 303 LRKCDDLGADLVFAEGYEEKGVGVAIMNRLNKAAG 337 >gi|302392964|ref|YP_003828784.1| translation factor SUA5 [Acetohalobium arabaticum DSM 5501] gi|302205041|gb|ADL13719.1| translation factor SUA5 [Acetohalobium arabaticum DSM 5501] Length = 351 Score = 340 bits (874), Expect = 1e-91, Method: Composition-based stats. Identities = 107/350 (30%), Positives = 165/350 (47%), Gaps = 33/350 (9%) Query: 1 MQIMSIT------DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR 54 M+++ T D NA+ + L G +A PTETVYGL ++ + A+ +++ K R Sbjct: 1 MEVIKGTRLFNLDDRNAISECSSILTDGGLVAFPTETVYGLGANALDAEAVNKIFTAKGR 60 Query: 55 PAMNPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK 113 PA NPLI H++ +S + K V L+ FWPGPLTLVL + ++T L Sbjct: 61 PADNPLIVHIASLSQLDKLVLKVPNQVKLLSDRFWPGPLTLVLKKKEI--VPDITTGGLD 118 Query: 114 TACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172 T R+P L+ P+A PSAN SG+ S T +H+++ + I IIDGG + Sbjct: 119 TIAVRLPDHKVALDLLNRCQLPVAAPSANLSGRPSPTLAQHVVTD-LGGRIEAIIDGGQT 177 Query: 173 KIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCVD-----ETSTPQSPGML 226 +G+EST++++ ++ +LRPGG+ + L + V+++ V E + +PGM Sbjct: 178 GVGVESTVISLVEDRP-TLLRPGGITYQELTEVLGEVDIDSAVKAELESENKSALAPGMK 236 Query: 227 KSHYAPRSQVRLRAIHVN---------------PREALIRFGNVPIKNIENAIISLNLSK 271 HY+P + V L + N A + Sbjct: 237 YKHYSPEADVILVEGEAERIAHKITKLADEYLAEGYQVGIMATEENSNFYTAGQVQVMGS 296 Query: 272 TGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 KL + NLF ++ DDSG I + N GLG+AI NRL +AA Sbjct: 297 RDKLSVISANLFRLLRSFDDSGVDIILIEGVSNQGLGLAIMNRLRKAAGY 346 >gi|254488117|ref|ZP_05101322.1| Sua5/YciO/YrdC family protein [Roseobacter sp. GAI101] gi|214044986|gb|EEB85624.1| Sua5/YciO/YrdC family protein [Roseobacter sp. GAI101] Length = 357 Score = 340 bits (874), Expect = 2e-91, Method: Composition-based stats. Identities = 132/323 (40%), Positives = 186/323 (57%), Gaps = 14/323 (4%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M + D + +A L +G +AIPTETVYGLA D+ N A+ R+Y K RP+ NPL Sbjct: 48 MTEILRPDLAGIDRAATLLRSGGLVAIPTETVYGLAADACNGAAVARIYAAKGRPSFNPL 107 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 I H+++ +++ L+ LA FWPGPLTLVL L + L TA L + RVP Sbjct: 108 IVHLAETQQARRYGLWSDLAEVLATAFWPGPLTLVLPLAPDHGLSSLVTAGLNSVAIRVP 167 Query: 121 C-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 +++ +G P+A PSAN SG+IS T +H+L + +I ++D G +GLEST Sbjct: 168 ALDAAHQVLTAFGGPVAAPSANPSGRISATTARHVL-DGLGGKIDAVLDAGPCPVGLEST 226 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 I+ + + +LR GGL +E ++ A+ LE + +PG L SHYAP ++VRL Sbjct: 227 IIGLHTPRP-TLLRAGGLPVEAIEAALGEPLEIA--NGAEIIAPGQLASHYAPNARVRLN 283 Query: 240 AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF 299 A+ NP E ++ FG V LNLS TG L EAA +LF+++ D IA Sbjct: 284 ALSANPGEVMLGFGPV--------DGDLNLSPTGDLIEAAAHLFDHLHALDAMD-KPIAV 334 Query: 300 SSIPNHGLGIAINNRLERAAAPR 322 + +P+HGLG AIN+RLERAAAPR Sbjct: 335 APVPDHGLGRAINDRLERAAAPR 357 >gi|254464111|ref|ZP_05077522.1| Sua5/YciO/YrdC family protein [Rhodobacterales bacterium Y4I] gi|206685019|gb|EDZ45501.1| Sua5/YciO/YrdC family protein [Rhodobacterales bacterium Y4I] Length = 316 Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats. Identities = 131/323 (40%), Positives = 177/323 (54%), Gaps = 14/323 (4%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +I++ T++ + +A + L G ++ PTETVYGL D+R A+ +YE K RP+ NPLI Sbjct: 7 EILAATEA-GIARAAQLLREGKLVSFPTETVYGLGADARQGKAVAAIYEAKGRPSFNPLI 65 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 HV +++ + + LA FWPGPLTLVL L I PL TA L T RVP Sbjct: 66 AHVHSAEAAQRYVEWNGTAETLAHAFWPGPLTLVLPLRGGHGISPLVTAGLDTLGVRVPA 125 Query: 122 GF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 + L+ P+A PSAN SG+IS T H+ + + I I+D G +GLESTI Sbjct: 126 HPAAQALLRALDGPVAAPSANPSGKISPTTAAHV-KAGLDGRIAAILDDGACGVGLESTI 184 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 + + + V +LRPGGL E ++ + +L D +PG L SHYAP + VRL A Sbjct: 185 IGLAGPEPV-LLRPGGLAAEEIEAVLGRKLGV-RDAHDPLTAPGQLLSHYAPGAPVRLNA 242 Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300 E + FG + LNLS+ G L EAA NLF ++ D G IA + Sbjct: 243 AAPVKGELYLGFG--------HGACDLNLSERGDLAEAAANLFGHLHQLDALG-KPIAVA 293 Query: 301 SIPNHGLGIAINNRLERAAAPRN 323 IP HGLG AIN+RL RAAAPR+ Sbjct: 294 PIPEHGLGEAINDRLRRAAAPRD 316 >gi|126653458|ref|ZP_01725554.1| hypothetical protein BB14905_19345 [Bacillus sp. B14905] gi|126589814|gb|EAZ83947.1| hypothetical protein BB14905_19345 [Bacillus sp. B14905] Length = 344 Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats. Identities = 116/347 (33%), Positives = 177/347 (51%), Gaps = 24/347 (6%) Query: 1 MQ-IMSITDSNA-----LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR 54 M+ + + DSN +A + L+AG +A PTETVYGL + N A+++++E K R Sbjct: 1 METVCKVVDSNVNSQINYTQAVDILNAGEVVAFPTETVYGLGAVATNDVAVKKIFEAKGR 60 Query: 55 PAMNPLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK 113 P+ NPLI HV V + + ++ LFWPGPLTLV+ + TA L Sbjct: 61 PSDNPLIVHVGTKEEVTNYIEHISEIAKQCMDLFWPGPLTLVMPAKPNV-LAQSVTAGLS 119 Query: 114 TACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172 T R+P L++ PLA PSANRSG+ S T H+L + IP I+DGG + Sbjct: 120 TVGIRMPDHPVALALLQQLQKPLAAPSANRSGKPSPTEAIHVL-DDLGGYIPYILDGGST 178 Query: 173 KIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDE---TSTPQSPGMLKSH 229 IGLEST+++V E V ILRPGG+ E L+ I ++ E TP++PGM +H Sbjct: 179 GIGLESTVLDVTHEPPV-ILRPGGITKEMLEAKIGPVIQPTKIEQKLEETPKAPGMKYTH 237 Query: 230 YAPRSQVRLRAIHVNP--------REALIRFGNVPIKNIEN--AIISLNLSKTGKLKEAA 279 YAP + V L H ++ + +N ++ A ++ G +E Sbjct: 238 YAPNAPVYLINCHDGEVSEAVQQLQQQGHAVALLAPENFQHSKADFYFSVGAEGSKEEMG 297 Query: 280 FNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326 +L++ ++ D + A+ I ++ G+G AI NRLE+A+ + S Sbjct: 298 ASLYHALRACDKTTATVILATTTSAEGVGAAIMNRLEKASGGKWYSL 344 >gi|303239759|ref|ZP_07326283.1| Sua5/YciO/YrdC/YwlC family protein [Acetivibrio cellulolyticus CD2] gi|302592696|gb|EFL62420.1| Sua5/YciO/YrdC/YwlC family protein [Acetivibrio cellulolyticus CD2] Length = 351 Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats. Identities = 112/338 (33%), Positives = 176/338 (52%), Gaps = 27/338 (7%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 D + +R A + L G +A PTETVYGL ++ N A+ R++ K RP+ NPLI HV+D Sbjct: 13 IDISKIRYASQVLKDGGLVAFPTETVYGLGANALNKEAVERIFIAKGRPSDNPLIVHVAD 72 Query: 67 ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 V+K S + + L FWPGPLTLV+D L I + TA L T RVP Sbjct: 73 KRSVEKLVSHIPNKASILMDKFWPGPLTLVMDKLPI--IPEVITAGLDTVAIRVPSHPIA 130 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 LI P+A PSAN SG+ S T+ +H+++ + ++ +IIDGG S IG+EST+V++ Sbjct: 131 LALIREAELPVAAPSANVSGKPSPTDSRHVIND-LNGKVDVIIDGGFSDIGVESTVVDMV 189 Query: 185 CEKKVRILRPGGLEIETLKRAIS------VELEYCVDETSTPQSPGMLKSHYAPRSQ--- 235 + + +LRPGG+ +E L+ + ++ +D+ P+SPGM HYAP++ Sbjct: 190 LDPPM-LLRPGGITVEQLEDVLGQIQIDPTLVKKNLDDIIIPRSPGMKYKHYAPKADVII 248 Query: 236 ---------VRLRAIHVNPREALIRFGNVPIKN---IENAIISLNLSKTGKLKEAAFNLF 283 VR+ + I+ G + + ++++L A NLF Sbjct: 249 VEGDPEKIAVRINEMVKEYEGKDIKVGILATDETVHLYPESLAVSLGSRLSPGTIAANLF 308 Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 ++ D + I S+ + G+G+AI NR+++AA Sbjct: 309 KALRDFDKTDVQMIFAESVDSSGIGLAIMNRMKKAAGY 346 >gi|148253877|ref|YP_001238462.1| translation factor SUA5 [Bradyrhizobium sp. BTAi1] gi|146406050|gb|ABQ34556.1| translation factor SUA5 [Bradyrhizobium sp. BTAi1] Length = 333 Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats. Identities = 137/307 (44%), Positives = 180/307 (58%), Gaps = 8/307 (2%) Query: 21 AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80 G +A PTETVYGL D+ N AI RLY+ K RPA NPLI HV+D++ ++ D ++ Sbjct: 30 RGGLVAFPTETVYGLGADASNAAAITRLYQAKGRPAFNPLIAHVADVAAARRIGRFDAVA 89 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPS 139 LA+ FWPGPLTLVL + L+TA L T RVP + L+ +G + PS Sbjct: 90 ERLAQAFWPGPLTLVLPQAEGCPVADLATAGLDTVAIRVPAHPVARALLAAFGGAVVAPS 149 Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEI 199 AN SG +S T H+ ++ + I LI+DGG ++G+ESTI+ E + LRPGG+ Sbjct: 150 ANISGHVSPTMAAHV-AADLDGRIDLILDGGAVEVGVESTIIGCFDEPTL--LRPGGVPR 206 Query: 200 ETLKRAISVEL----EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNV 255 E ++ + L + P +PGML SHYAPR+ VRL A V P EAL+ FG V Sbjct: 207 EAIEAVLGRPLARAAAAEAQASEQPLAPGMLASHYAPRAAVRLAATEVAPDEALLAFGPV 266 Query: 256 PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRL 315 I +A LNLS +G EAA +LF Y++ D GA SIA IP+ GLG AIN+RL Sbjct: 267 AIPGAADAAAMLNLSPSGDPAEAATHLFGYLRSLDAKGARSIAVMPIPDDGLGEAINDRL 326 Query: 316 ERAAAPR 322 RAAAPR Sbjct: 327 RRAAAPR 333 >gi|146278497|ref|YP_001168656.1| Sua5/YciO/YrdC/YwlC family protein [Rhodobacter sphaeroides ATCC 17025] gi|145556738|gb|ABP71351.1| translation factor SUA5 [Rhodobacter sphaeroides ATCC 17025] Length = 312 Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats. Identities = 137/315 (43%), Positives = 179/315 (56%), Gaps = 15/315 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + A L G +A+PTETVYGLA D+RN A+ R++E K RP NPLI HV D+ Sbjct: 11 PEGVADAARILAGGGLVALPTETVYGLAGDARNDRAVARIFEAKGRPQFNPLIVHVPDLE 70 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 +++A D +L LA+ FWPGPLTLVL L + PL +A L T RVP ++L Sbjct: 71 AARRYARFDAEALRLAETFWPGPLTLVLP-LEGEPVSPLVSAGLPTVAIRVPAHPLAQRL 129 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + +G PLA PSAN SG++S T +H+L + I ++DGG ++G+ESTIV Sbjct: 130 MRAFGGPLAAPSANPSGRVSPTRPEHVL-EGLAGRIEAVLDGGACEVGVESTIV--APGD 186 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 +LRPGGL +E L+ I L + P +PG L SHYAP + VRL A P E Sbjct: 187 PPLLLRPGGLPVEALEDCIGEPL-ITGGSSERPSAPGQLSSHYAPDAPVRLGATEAAPDE 245 Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307 I FG LNLS G L EAA NLF+ ++ AD G IA + +P GL Sbjct: 246 TWIGFGRTGGP--------LNLSPGGDLVEAAANLFHLLRQADRLG-RPIAVAPVPERGL 296 Query: 308 GIAINNRLERAAAPR 322 G AIN+RL RAA+PR Sbjct: 297 GRAINDRLRRAASPR 311 >gi|84684410|ref|ZP_01012311.1| Putative translation factor [Maritimibacter alkaliphilus HTCC2654] gi|84667389|gb|EAQ13858.1| Putative translation factor [Rhodobacterales bacterium HTCC2654] Length = 317 Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats. Identities = 132/319 (41%), Positives = 183/319 (57%), Gaps = 13/319 (4%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + D + +A E L AG ++ PTETVYGL + + A+ R++E K RP NPLI HV Sbjct: 11 VPDDTGIARAAEVLLAGGLVSFPTETVYGLGGVATDDIAVARIFEAKGRPHFNPLIAHVP 70 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 D+ V K A + + LA+ FWPGPLTLVL + + + PL +A L T RVP Sbjct: 71 DLEAVSKIAELSERAHDLAQAFWPGPLTLVLPMRADAGLSPLVSAGLTTVAVRVPDHPLA 130 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 +KL+ G P+ PSAN SG+IS T H+L + + I ++DGG +G+ESTIV Sbjct: 131 QKLLRAVGRPVVAPSANPSGRISPTEAAHVL-AGLGGRIEAVLDGGPCSVGVESTIVGF- 188 Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244 + +LRPGGL E ++ A+ L E + +PG L SHYAP ++VRL A Sbjct: 189 -NPEPVLLRPGGLPAEAIEDALGAPLARRA-EGAGINAPGQLASHYAPDARVRLDAEAAR 246 Query: 245 PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPN 304 P E ++ FG +A +NLS +G L EAA NLF + D +G + IA + +P+ Sbjct: 247 PGERMLGFG--------DADGEMNLSPSGDLVEAAANLFRMLHALDAAGDAPIAVAPVPD 298 Query: 305 HGLGIAINNRLERAAAPRN 323 GLG AIN+RL RAAAPR+ Sbjct: 299 TGLGRAINDRLRRAAAPRD 317 >gi|312114717|ref|YP_004012313.1| Sua5/YciO/YrdC/YwlC family protein [Rhodomicrobium vannielii ATCC 17100] gi|311219846|gb|ADP71214.1| Sua5/YciO/YrdC/YwlC family protein [Rhodomicrobium vannielii ATCC 17100] Length = 320 Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats. Identities = 134/321 (41%), Positives = 177/321 (55%), Gaps = 13/321 (4%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 ++ D A+ +A L +G +A PTETVYGL D+ N A+ R++E K RP NPLI Sbjct: 1 MIENADGTAIERAAHILRSGGLVAFPTETVYGLGADATNGVAVARIFEAKGRPRFNPLIV 60 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTT--DIHPLSTANLKTACFRVP 120 HV D ++ A D + LA FWPGPLTLVL L + L TA L T RVP Sbjct: 61 HVPDADAARRFAVFDAEADALAARFWPGPLTLVLPLRRDVEQPLSDLVTAGLDTVAIRVP 120 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + L+E G P+A PSAN SG+IS T H+ + I + +I+DGG + GLEST Sbjct: 121 HHPVARALLEAAGVPVAAPSANISGRISPTRAAHV-AEDIGARVNMILDGGAADAGLEST 179 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 IV ++ + +LRPG + E ++ A+ L E +PG L SHYAP + VRL Sbjct: 180 IVALK--PRPTMLRPGAVAREDVEAALGAPLAD-RGEGDGVTAPGQLASHYAPNASVRLH 236 Query: 240 AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF 299 A P E L+ FG KN ++NLS+ G L+EAA NLF ++ D IA Sbjct: 237 ASEARPGETLLGFGPAAPKN------AMNLSRAGDLREAAANLFACLRALDAEKPGRIAV 290 Query: 300 SSIPNHGLGIAINNRLERAAA 320 IP+ GLG AIN+RL RAAA Sbjct: 291 MPIPDKGLGEAINDRLRRAAA 311 >gi|225419868|ref|ZP_03762171.1| hypothetical protein CLOSTASPAR_06209 [Clostridium asparagiforme DSM 15981] gi|225041492|gb|EEG51738.1| hypothetical protein CLOSTASPAR_06209 [Clostridium asparagiforme DSM 15981] Length = 360 Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats. Identities = 111/348 (31%), Positives = 163/348 (46%), Gaps = 36/348 (10%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 I D L +A E L G +A PTETVYGL ++ + A R++YE K RP+ NPLI HV Sbjct: 13 RIHDRELL-EAAEILREGGLVAFPTETVYGLGANALDEAAARKIYEAKGRPSDNPLIAHV 71 Query: 65 SDISMVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CG 122 +D V+ P + L + FWPGPLT++ + +T L T R+P Sbjct: 72 ADPEDVEALVEYIPENGRKLMEAFWPGPLTMIFPKSPA--VPYGTTGGLDTVAIRMPSDP 129 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 +LI G P+A PSAN SG+ S T H+ + I +IIDGG IG+ESTIV+ Sbjct: 130 VANRLIALAGVPVAAPSANTSGRPSPTTADHVW-QDMNGRIDMIIDGGPVGIGVESTIVD 188 Query: 183 VQCEKKVRILRPGGLEIETLKRAIS-VELEYCV----DETSTPQSPGMLKSHYAPRSQV- 236 V C + +LRPG + +E L+ + V+++ + P++PGM HYAPR+++ Sbjct: 189 VSC-RIPTVLRPGAITMEMLREVLDEVKIDPAILGPMGADMRPRAPGMKYKHYAPRAELT 247 Query: 237 --------------------RLRAIHVNPREALIRFGNVPIKNIEN---AIISLNLSKTG 273 R+ + A R G + + + ++ Sbjct: 248 LVEPTEGQGEDAAAVERMIQRVNQLAQEKLAAGSRVGIICTDESRDRYEGGLVRSIGARA 307 Query: 274 KLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 K + A NL+ ++ DD I S LG AI NRL +AA Sbjct: 308 KKETVAHNLYAVLREFDDLKVDYIYSESFSEDHLGQAIMNRLSKAAGY 355 >gi|126728298|ref|ZP_01744114.1| Sua5/YciO/YrdC family protein [Sagittula stellata E-37] gi|126711263|gb|EBA10313.1| Sua5/YciO/YrdC family protein [Sagittula stellata E-37] Length = 328 Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats. Identities = 133/316 (42%), Positives = 177/316 (56%), Gaps = 13/316 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L +A L G +A PTETVYGL D+R+ A+ +Y K RP+ NPLI H +D+ Sbjct: 25 DPTGLARAASLLRDGRLVAFPTETVYGLGADARDDHAVAAIYAAKGRPSFNPLIVHFADL 84 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126 +K + + +A+ FWPGPLTLVL L + L TA L T R+P + Sbjct: 85 DALKPMVTWSDEAEAIAESFWPGPLTLVLPLREGARVSKLVTAGLDTIAVRMPAAPVARD 144 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+ G P+A PSAN SGQIS T +H+ ++S+ + I+DGG K+GLESTI+ + Sbjct: 145 LLRAAGVPVAAPSANVSGQISPTRAEHV-AASLGDRVDAILDGGPCKVGLESTILGL--A 201 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246 + +LRPGG+ E L + + + T +PG +SHYAPR+ VRL AI P Sbjct: 202 GRPTLLRPGGITREALGHVLGRRIAE-RHGSDTISAPGQTRSHYAPRAAVRLNAIEFEPG 260 Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306 EA + FG V LNLS +G L EAA NLF Y+ D IA S IP+ G Sbjct: 261 EASLGFGEVEAD--------LNLSPSGDLTEAAANLFEYLHRLDAKAPKVIAISPIPHLG 312 Query: 307 LGIAINNRLERAAAPR 322 LG+AIN+RL RAAA R Sbjct: 313 LGVAINDRLSRAAADR 328 >gi|148269220|ref|YP_001243680.1| Sua5/YciO/YrdC/YwlC family protein [Thermotoga petrophila RKU-1] gi|147734764|gb|ABQ46104.1| translation factor SUA5 [Thermotoga petrophila RKU-1] Length = 335 Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats. Identities = 112/321 (34%), Positives = 164/321 (51%), Gaps = 12/321 (3%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L++A E L G I PTETVYG+ D+ N A R+++E+K RP NPLI H+ Sbjct: 13 DEEVLKEAVELLRNGEVIIFPTETVYGIGADAYNEEACRKIFELKGRPTDNPLIVHIHSF 72 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 +++ A L K FWPGPLT++L + I + TA L T R+P K Sbjct: 73 DQLEEIAEGYEAHLDFLKKFWPGPLTVIL-RKKSEKIPLVVTAGLSTVAVRMPAHPVALK 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LIE +G+P+A PSAN SG+ S TNV+H++ + K + LIID G + GLESTIV++ E Sbjct: 132 LIELFGNPIAAPSANLSGRPSATNVQHVIEDFMGK-VKLIIDAGNTPFGLESTIVDLTKE 190 Query: 187 KKVRILRPGGLEIETLK----RAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242 K V +LRPG +E+E L+ + + + P +PGM HYAP + L Sbjct: 191 KPV-LLRPGPVEVERLRELFPELVVPDFVRKGNFKGRPLAPGMKYRHYAPSKPLILVEDL 249 Query: 243 VNPREALIRFGNVPI----KNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIA 298 E L ++ N + + E + + A N+F+ ++ A+ G I Sbjct: 250 TKMEEVLKKYPNHVVICVDERKELYDDIIVVGSLKNPYSIAQNIFSVLREAEKRGKEYII 309 Query: 299 FSSIPNHGLGIAINNRLERAA 319 G+ A+ NRL +AA Sbjct: 310 VEGFEERGILFAVMNRLRKAA 330 >gi|300023494|ref|YP_003756105.1| Sua5/YciO/YrdC/YwlC family protein [Hyphomicrobium denitrificans ATCC 51888] gi|299525315|gb|ADJ23784.1| Sua5/YciO/YrdC/YwlC family protein [Hyphomicrobium denitrificans ATCC 51888] Length = 315 Score = 340 bits (872), Expect = 2e-91, Method: Composition-based stats. Identities = 124/317 (39%), Positives = 186/317 (58%), Gaps = 6/317 (1%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 ++ + +A L +G +A PTETVYGL D+ N A+ R++ K RP+ NPLI HV + Sbjct: 4 NAEWIEEAGGLLRSGALVAFPTETVYGLGADATNGEAVARVFAAKGRPSFNPLIVHVLGL 63 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 S + L + FWPGPLTLV+ + TTD+ L +A L T R P ++ Sbjct: 64 EQAVIIGSFSATARRLTEAFWPGPLTLVVPRIETTDVSELVSAGLPTVALRSPDHPVARQ 123 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L++ P+A PSANRSG +S T +H+ ++ + +I+D G + GLEST+V++ Sbjct: 124 LLKAAQRPIAAPSANRSGHVSATRAEHV-AADLGDRAAVILDAGQTPRGLESTVVSLAGA 182 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246 V +LRPG + + +++ + ++ + SPG L+SHYAP S++RL A P Sbjct: 183 APV-LLRPGAISADAIEKVLGEKIARASESGEHLTSPGQLRSHYAPNSRIRLNATAWEPH 241 Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306 EA++ FG V + ++N+S +G L EAA NLF ++ D SGA++IA + IP HG Sbjct: 242 EAVLAFGAV---EEHPSKATINISPSGDLIEAAANLFAALRKLDGSGAATIAVTPIPAHG 298 Query: 307 LGIAINNRLERAAAPRN 323 LG AIN+RL RAAAPR+ Sbjct: 299 LGEAINDRLARAAAPRD 315 >gi|256848017|ref|ZP_05553461.1| translation factor SUA5 [Lactobacillus coleohominis 101-4-CHN] gi|256715077|gb|EEU30054.1| translation factor SUA5 [Lactobacillus coleohominis 101-4-CHN] Length = 342 Score = 340 bits (872), Expect = 2e-91, Method: Composition-based stats. Identities = 109/339 (32%), Positives = 180/339 (53%), Gaps = 20/339 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ + I + + + +A + L +G +A PTETVYGL D+ N A++++Y+ K RP+ NPL Sbjct: 1 METI-IYNLDQIGEAAQALRSGQLVAFPTETVYGLGADATNEEAVKKVYQAKGRPSDNPL 59 Query: 61 ICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I HV+ ++MV+K+ A + + L FWPG LT++L + + + T L T FR Sbjct: 60 IVHVASVAMVEKYAAEIPEKARQLMTAFWPGSLTIILKIKPGS-LSKTVTGGLSTVAFRF 118 Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P C T LIE G P+ PSAN SG+ S T +H+ + +I I+D G +K+G+ES Sbjct: 119 PKCQPTLDLIEQAGVPMVGPSANTSGKPSPTTAQHVY-HDLHGKIYGILDDGPTKVGVES 177 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQV 236 T++++ + V ILRPG + ++ I + V + P++PGM HYAP +QV Sbjct: 178 TVLDMSTDHPV-ILRPGAVTKADIEGVIGSIDLNHHHVGKGEIPKAPGMKYKHYAPNAQV 236 Query: 237 RLRAIHVNPREALIRFGNVPIK---NIENAII-SLNLSKTGK-------LKEAAFNLFNY 285 + + + P E+ I+ L L K + + +A+ LF+ Sbjct: 237 YIVDPEEDWANVMKWVEQQPFAVGVMAEDVILKQLTLPKNAQAFSLGNGVTDASARLFDG 296 Query: 286 MKIADDSG-ASSIAFSSIPNHGLGIAINNRLERAAAPRN 323 +++ DD +I + P H LG+A NRL ++A ++ Sbjct: 297 LRMYDDEKQVQAIVTQAFPAHDLGLAYMNRLNKSAGGQH 335 >gi|299134711|ref|ZP_07027903.1| Sua5/YciO/YrdC/YwlC family protein [Afipia sp. 1NLS2] gi|298590521|gb|EFI50724.1| Sua5/YciO/YrdC/YwlC family protein [Afipia sp. 1NLS2] Length = 326 Score = 340 bits (872), Expect = 2e-91, Method: Composition-based stats. Identities = 134/309 (43%), Positives = 177/309 (57%), Gaps = 8/309 (2%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 + L AG +A PTETVYGL D N AI RLYE K RP+ NPLI H+ + ++ A Sbjct: 21 DCLAAGGLVAFPTETVYGLGADGTNGKAIARLYEAKGRPSFNPLIAHLPTLEAAQRVAIF 80 Query: 77 DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPL 135 + +L LA+ FWPGPLTLVL + L+TA L T R+P + +++ G P+ Sbjct: 81 NETALKLARAFWPGPLTLVLPKAPGCPVSELATAGLDTVAVRIPAHPVAQAILQALGRPI 140 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 PSANRSG +S T H+L + I LI+DGG +G+ESTIV + LRPG Sbjct: 141 VAPSANRSGHVSPTTAAHVL-HDLDGRIDLIVDGGPVSVGVESTIVGCSGAPVL--LRPG 197 Query: 196 GLEIETLKRAISVELEYC--VDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFG 253 G ++ + V L + +P +PGML+SHYAP + VRL A +N EAL+ FG Sbjct: 198 GTPRADIEAVLGVPLGRLETIPGHDSPLAPGMLESHYAPAAAVRLGATALNADEALLAFG 257 Query: 254 NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINN 313 +LNLS G L EAA NLF +++ D++GA +IA IP HGLG AIN+ Sbjct: 258 EALPGARPQR--TLNLSPRGDLIEAAANLFGHLRALDETGAQAIAVMPIPTHGLGEAIND 315 Query: 314 RLERAAAPR 322 RL RAAA R Sbjct: 316 RLRRAAADR 324 >gi|254476620|ref|ZP_05090006.1| Sua5/YciO/YrdC family protein [Ruegeria sp. R11] gi|214030863|gb|EEB71698.1| Sua5/YciO/YrdC family protein [Ruegeria sp. R11] Length = 315 Score = 340 bits (872), Expect = 2e-91, Method: Composition-based stats. Identities = 132/315 (41%), Positives = 173/315 (54%), Gaps = 13/315 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +R+A L G +A PTETVYGL D+R A+ LY K RP+ NPLI HV I Sbjct: 13 PQDIRQAAALLQDGQLVAFPTETVYGLGADARQGEAVAALYAAKGRPSFNPLIAHVHSIE 72 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127 K+H + LA+ FWPGPLTLVL L DI L TA L+T R+P + L Sbjct: 73 AAKRHVIWTETANKLAEAFWPGPLTLVLPLRDGHDISHLVTAGLETLGVRIPAHPAARAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + P+A PSAN SG+IS T H++ + + I I+D G +G+ESTIV + E Sbjct: 133 LSALDGPVAAPSANPSGRISPTTAAHVV-AGLDGRIAAIVDDGPCGVGVESTIVGLSGET 191 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 + +LRPGGL E ++ + L+ D + +PG L SHYAPR++VRL +P E Sbjct: 192 PI-LLRPGGLAQEDIETVLGHPLQ-LRDASDPLTAPGQLLSHYAPRAKVRLNVTTPDPAE 249 Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307 + FG + LNLS + L EAA NLF ++ D IA + IP HGL Sbjct: 250 LYLGFGTMSCD--------LNLSDSADLVEAAANLFGHLHQLDAMD-KPIAVAPIPEHGL 300 Query: 308 GIAINNRLERAAAPR 322 G AIN+RL RAAAPR Sbjct: 301 GAAINDRLRRAAAPR 315 >gi|227544506|ref|ZP_03974555.1| translation factor SUA5 [Lactobacillus reuteri CF48-3A] gi|300909306|ref|ZP_07126767.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus reuteri SD2112] gi|227185529|gb|EEI65600.1| translation factor SUA5 [Lactobacillus reuteri CF48-3A] gi|300893171|gb|EFK86530.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus reuteri SD2112] Length = 354 Score = 340 bits (872), Expect = 3e-91, Method: Composition-based stats. Identities = 108/327 (33%), Positives = 172/327 (52%), Gaps = 19/327 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 + +A + G +A PTETVYGL D+ N A++ +Y K RP+ NPLI HV+ I+MV Sbjct: 22 EIAQAAAAIKRGELVAFPTETVYGLGADATNEKAVKNVYLAKGRPSDNPLIVHVNSIAMV 81 Query: 71 KKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLI 128 KK+ A + + L FWPG LT++L + + T LKT FR P C T LI Sbjct: 82 KKYAAEIPDNARKLMDAFWPGSLTIILKIKKGA-LSKTVTGGLKTVAFRYPDCQPTLDLI 140 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E G P+ PSAN SG+ S T +H+ + +I I+D G +++G+EST++++ + Sbjct: 141 EEAGVPMVGPSANTSGKPSPTTAQHVY-HDLHGKISGIVDNGPTRVGVESTVLDMSTDHP 199 Query: 189 VRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246 V ILRPG + + +++ I + V + TP++PGM HYAP++QV + N Sbjct: 200 V-ILRPGAVTKKDIEKVIGSIDLNHHKVGKNETPKAPGMKYKHYAPKAQVYIVDEDTNWD 258 Query: 247 EALIRFGNVPI--------KNIENAIISLN---LSKTGKLKEAAFNLFNYMKIADDS-GA 294 + + P K ++ ++ +N S +++A+ LF+ ++ DD Sbjct: 259 KVVEWIRQQPFDVGMMAEEKVLQQEVLPMNAIQFSLGKNVQDASARLFDGLRQFDDQPNV 318 Query: 295 SSIAFSSIPNHGLGIAINNRLERAAAP 321 +I + P H LG A NRL ++A Sbjct: 319 KAIVTQAFPAHDLGGAYMNRLNKSAGG 345 >gi|172058702|ref|YP_001815162.1| Sua5/YciO/YrdC/YwlC family protein [Exiguobacterium sibiricum 255-15] gi|171991223|gb|ACB62145.1| Sua5/YciO/YrdC/YwlC family protein [Exiguobacterium sibiricum 255-15] Length = 332 Score = 339 bits (871), Expect = 3e-91, Method: Composition-based stats. Identities = 111/333 (33%), Positives = 175/333 (52%), Gaps = 16/333 (4%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ + L++A L G +AIPTETVYGLA D+ + TA+RR++ K RP+ NPL Sbjct: 1 MKT-EMIQQETLKEAVRLLQEGEVVAIPTETVYGLAGDATSETAVRRIFAAKGRPSDNPL 59 Query: 61 ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I HV+ + K+ + ++ L FWPG LT++L+ S L TA L T R+ Sbjct: 60 IVHVASVEQAKQFVTHIPDVAAQLMDTFWPGALTIILE--SNGRASSLVTAGLDTIGLRM 117 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P +LIE G LA PSANRSG+ S T+ H+ + + I I+DGG + IG+ES Sbjct: 118 PDHPLALQLIEATGLGLAAPSANRSGKPSPTSSAHV-AHDLSGRIAAIVDGGETGIGVES 176 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCVD-ETSTPQSPGMLKSHYAPRSQV 236 T+++ V ILRPGG+ E ++ I L+ + + TP++PGM +HYAP + + Sbjct: 177 TVIDCTTNPPV-ILRPGGVTREQIESVIGNTALDPALSMKDQTPKAPGMKYTHYAPEATL 235 Query: 237 RLRAIHVNPREALIRFGN-------VPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIA 289 + A ++ + LI V + + E+ + ++ AA L++ ++ Sbjct: 236 SVVAGDLSFLQQLIDEARQNGQKTGVILFDGEDIEADVRCFLGTTMETAAQRLYDCLRRF 295 Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 D + I + G+G+A+ NRL +AA R Sbjct: 296 DQTTVDQIFVRDLSEEGVGLAVRNRLHKAAGGR 328 >gi|148543689|ref|YP_001271059.1| translation factor SUA5 [Lactobacillus reuteri DSM 20016] gi|184153099|ref|YP_001841440.1| putative translation factor [Lactobacillus reuteri JCM 1112] gi|227363332|ref|ZP_03847461.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus reuteri MM2-3] gi|325682060|ref|ZP_08161578.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus reuteri MM4-1A] gi|148530723|gb|ABQ82722.1| translation factor SUA5 [Lactobacillus reuteri DSM 20016] gi|183224443|dbj|BAG24960.1| putative translation factor [Lactobacillus reuteri JCM 1112] gi|227071639|gb|EEI09933.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus reuteri MM2-3] gi|324978704|gb|EGC15653.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus reuteri MM4-1A] Length = 342 Score = 339 bits (871), Expect = 3e-91, Method: Composition-based stats. Identities = 106/327 (32%), Positives = 172/327 (52%), Gaps = 19/327 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 + +A + G +A PTETVYGL D+ N A++ +Y K RP+ NPLI HV+ I+MV Sbjct: 10 EIAQAAAAIKRGELVAFPTETVYGLGADATNEKAVKNVYLAKGRPSDNPLIVHVNSIAMV 69 Query: 71 KKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLI 128 +K+ A + + L FWPG LT++L + + T LKT FR P C T LI Sbjct: 70 EKYAAEIPDNARKLMDAFWPGSLTIILKIKKGA-LSKTVTGGLKTVAFRYPDCQPTLDLI 128 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E G P+ PSAN SG+ S T +H+ + +I I+D G +++G+EST++++ + Sbjct: 129 EEAGVPMVGPSANTSGKPSPTTAQHVY-HDLHGKISGIVDNGPTRVGVESTVLDMSTDHP 187 Query: 189 VRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246 V ILRPG + + +++ I + V + TP++PGM HYAP++QV + + Sbjct: 188 V-ILRPGAVTKKDIEKVIGSIDLNHHKVGKNETPKAPGMKYKHYAPKAQVYIVDEDTDWD 246 Query: 247 EALIRFGNVPI--------KNIENAIISLN---LSKTGKLKEAAFNLFNYMKIADDS-GA 294 + + P K ++ ++ +N S +++A+ LF+ ++ DD Sbjct: 247 KVVEWIRQQPFDVGMMAEEKVLQQEVLPMNAIQFSLGKNVQDASARLFDGLRQFDDQPNV 306 Query: 295 SSIAFSSIPNHGLGIAINNRLERAAAP 321 +I + P H LG A NRL ++A Sbjct: 307 KAIVTQAFPAHDLGGAYMNRLNKSAGG 333 >gi|294617197|ref|ZP_06696849.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1679] gi|291596542|gb|EFF27783.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1679] Length = 341 Score = 339 bits (871), Expect = 3e-91, Method: Composition-based stats. Identities = 111/338 (32%), Positives = 173/338 (51%), Gaps = 21/338 (6%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ D L++A E L AG +A PTETVYGL ++ P ++++++ +K RP NPL Sbjct: 1 METKR-YDETELQEAAEALKAGELVAFPTETVYGLGANALLPNSVKKVFSVKGRPQDNPL 59 Query: 61 ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I HV+ VK++ P + + K FWPGPLTL+ + T + + T L TA FR+ Sbjct: 60 IVHVASFEQVKEYVDNFHPAAEKIVKNFWPGPLTLIFKIKKDT-LPSVVTGGLSTAAFRM 118 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T ++IE G PL PSAN SG+ S T H+ + +I IID G ++IG+ES Sbjct: 119 PDNKKTLEVIELSGVPLVGPSANTSGKPSPTTADHVY-HDLQGKITGIIDDGATRIGVES 177 Query: 179 TIVNVQCEK-KVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRS 234 T++++ ILRPG + E ++ I + ++ V E TP++PGM HY+P + Sbjct: 178 TVLDLSDPAVAPMILRPGAVTKEQIEAVIESPVAIDQHLVKENETPKAPGMKYKHYSPDT 237 Query: 235 QVRLRAIHVNP------REALIRFGNVPIKNIENAI----ISLNLSKTGKLKEAAFNLFN 284 +V + + IR G + I + + ++ + ++ AA LF Sbjct: 238 RVLMVRDGDWSTAVQWTKNKKIRAGVIASPEIADQVRTDTAAVYMYNDNSVEAAAKGLFA 297 Query: 285 YMKIADD--SGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ D+ G I P GLG A NRL++AA Sbjct: 298 GLRGLDEPTLGLDLIFVQVYPETGLGNAYMNRLKKAAG 335 >gi|13476186|ref|NP_107756.1| hypothetical protein mlr7439 [Mesorhizobium loti MAFF303099] gi|14026946|dbj|BAB53542.1| mlr7439 [Mesorhizobium loti MAFF303099] Length = 327 Score = 339 bits (871), Expect = 3e-91, Method: Composition-based stats. Identities = 153/317 (48%), Positives = 197/317 (62%), Gaps = 4/317 (1%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 AL +A L G +AIPTETVYGLA D+ N + R++E K RP NPLI HV+D++M Sbjct: 12 EALERALALLGDGDVVAIPTETVYGLAGDATNGIGVARIFEAKGRPRFNPLIAHVADMAM 71 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129 ++ A DPLS LA+ FWPGPLTLVL IHPL TA L T R+P GF LI Sbjct: 72 AERIAVFDPLSKKLAQAFWPGPLTLVLPQRPGNGIHPLVTAGLDTIALRMPRGFGGDLIA 131 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PLA PSAN SG+IS T + + ++ + I L++DGG + +GLESTIV + V Sbjct: 132 KLGRPLAAPSANSSGRISATTAQAV-AADLGARIKLVVDGGATPVGLESTIVKAEGAG-V 189 Query: 190 RILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREAL 249 R+LRPGG+ E ++ +E + ++PGML SHYAP + +RL A V EAL Sbjct: 190 RLLRPGGIAAEE--IEAAIGMELLRGGGAGIEAPGMLASHYAPGAAMRLNAGMVGEGEAL 247 Query: 250 IRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGI 309 + FG + NA LNLS +G L+EAA NLF YM+ D SGA +IA +IP GLG Sbjct: 248 LGFGGNRAEGWRNATAFLNLSASGDLREAASNLFAYMQELDRSGARTIAVETIPFDGLGE 307 Query: 310 AINNRLERAAAPRNQSQ 326 AIN+RL RAAAPR+ +Q Sbjct: 308 AINDRLARAAAPRDNAQ 324 >gi|297183981|gb|ADI20101.1| putative translation factor (sua5) [uncultured alpha proteobacterium EB080_L06A09] Length = 318 Score = 339 bits (871), Expect = 3e-91, Method: Composition-based stats. Identities = 130/327 (39%), Positives = 192/327 (58%), Gaps = 17/327 (5%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +I+ T+S+ A + L +G +A PTETVYGL D+ N A+ ++Y KKRP NPLI Sbjct: 4 KILK-TNSDGYDTASKILQSGGLVAFPTETVYGLGADALNNNAVSKIYAAKKRPTFNPLI 62 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 HV ++ +K A D SL LA FWPGPLT+V + + ++ L TA L+T FRVP Sbjct: 63 VHVLNLETAQKFAIFDEDSLLLANKFWPGPLTIVAPIKADANLSKLITAGLETVAFRVPS 122 Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 +KL++ + P+A PSAN SG IS TN H+ + + I I++GG +GLESTI Sbjct: 123 HPVARKLLKEFDGPVAAPSANPSGSISSTNAIHV-KNGLNGRIQAILNGGKCNVGLESTI 181 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 + + + ILR GG+ +++ + +L +P +PG L SHYAP +++R+ A Sbjct: 182 I-LSKSGECSILRSGGIPESEIEKVLGYKLS-SSKNPDSPIAPGQLSSHYAPNAKLRMNA 239 Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD----SGASS 296 E +I FG+V + LNLS G L EAA NLF+++ +AD+ G + Sbjct: 240 EKAYDDEYMIGFGDV--------VGQLNLSSQGDLTEAATNLFSFLHMADEDAITLGKTK 291 Query: 297 IAFSSIPNHGLGIAINNRLERAAAPRN 323 IA + IP + LGIAIN+RL+RA+ P++ Sbjct: 292 IAVAPIPMNDLGIAINDRLKRASTPKD 318 >gi|261208265|ref|ZP_05922938.1| sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TC 6] gi|289565645|ref|ZP_06446091.1| translation factor SUA5 [Enterococcus faecium D344SRF] gi|294615327|ref|ZP_06695202.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1636] gi|260077522|gb|EEW65240.1| sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TC 6] gi|289162613|gb|EFD10467.1| translation factor SUA5 [Enterococcus faecium D344SRF] gi|291591830|gb|EFF23464.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1636] Length = 341 Score = 339 bits (870), Expect = 4e-91, Method: Composition-based stats. Identities = 111/338 (32%), Positives = 173/338 (51%), Gaps = 21/338 (6%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ D L++A E L AG +A PTETVYGL ++ P ++++++ +K RP NPL Sbjct: 1 METKR-YDETELQEAAEALKAGELVAFPTETVYGLGANALLPNSVKKVFSVKGRPQDNPL 59 Query: 61 ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I HV+ VK++ P + + K FWPGPLTL+ + T + + T L TA FR+ Sbjct: 60 IVHVASFEQVKEYVDNFHPAAEKIVKNFWPGPLTLIFKIKKDT-LPSVVTGGLSTAAFRM 118 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T ++IE G PL PSAN SG+ S T H+ + +I IID G ++IG+ES Sbjct: 119 PDNKKTLEVIELSGVPLVGPSANTSGKPSPTTADHVY-HDLQGKITGIIDDGATRIGVES 177 Query: 179 TIVNVQCEK-KVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRS 234 T++++ ILRPG + E ++ I + ++ V E TP++PGM HY+P + Sbjct: 178 TVLDLSDPAVAPMILRPGAVTKEQIEAVIESPVAIDQHLVKENETPKAPGMKYKHYSPDT 237 Query: 235 QVRLRAI------HVNPREALIRFGNVPIKNIENAI----ISLNLSKTGKLKEAAFNLFN 284 +V + + IR G + I + + ++ + ++ AA LF Sbjct: 238 RVLMVRDGDWSTAVQWAKNKKIRAGVIASPEIADQVRTDTAAVYMYNDNSVEAAAKGLFA 297 Query: 285 YMKIADD--SGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ D+ G I P GLG A NRL++AA Sbjct: 298 GLRGLDEPTLGLDLIFVQVYPETGLGNAYMNRLKKAAG 335 >gi|126726057|ref|ZP_01741899.1| Putative translation factor [Rhodobacterales bacterium HTCC2150] gi|126705261|gb|EBA04352.1| Putative translation factor [Rhodobacterales bacterium HTCC2150] Length = 320 Score = 339 bits (870), Expect = 4e-91, Method: Composition-based stats. Identities = 131/327 (40%), Positives = 183/327 (55%), Gaps = 13/327 (3%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 QI+S D+ L + L G +A PTETVYGL D+RN A+ ++ K RP+ NPLI Sbjct: 4 QILSANDA-GLSLSSLILQRGGLVAFPTETVYGLGADARNDKAVAAIFAAKGRPSFNPLI 62 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 HV + + A PL+ LA+ FWPGPL+LVL LL + L +A + + R+P Sbjct: 63 VHVQSLPAATEFADFSPLAFKLAQAFWPGPLSLVLPLLKGGQLSHLVSAGMPSVAIRIPA 122 Query: 122 GFTKK-LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 + L++ +G P+A PSAN SGQIS T H+ ++ + I I+DGG+ +G+ESTI Sbjct: 123 HPVAQGLLQVFGGPIAAPSANPSGQISPTTPGHV-TAGLKDRIDAILDGGLCSVGVESTI 181 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 + V + V +LRPGG+ +E + + I +ET+ SPG L SHYAP++ + L Sbjct: 182 LGVSDDD-VTLLRPGGISVEQIAKVIGFTPTLTTNETTP-NSPGQLLSHYAPKADIVLNV 239 Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGA--SSIA 298 P + FGN A +LNLS G L EAA NLF ++ D IA Sbjct: 240 TDPEPEMMSLGFGNAI------AHPTLNLSPKGDLTEAAANLFAHLHALDAMANAGQCIA 293 Query: 299 FSSIPNHGLGIAINNRLERAAAPRNQS 325 + IP GLG+AIN+RL RAAAPR+ Sbjct: 294 VAPIPMTGLGLAINDRLTRAAAPRDGQ 320 >gi|302384783|ref|YP_003820605.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium saccharolyticum WM1] gi|302195411|gb|ADL02982.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium saccharolyticum WM1] Length = 353 Score = 339 bits (870), Expect = 4e-91, Method: Composition-based stats. Identities = 105/338 (31%), Positives = 160/338 (47%), Gaps = 28/338 (8%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 ++ L K + + G +A PTETVYGL ++ N A ++Y K RP+ NPLI H+ D Sbjct: 15 EAELLIKPADIIRKGGLVAFPTETVYGLGGNALNEEAAGKIYAAKGRPSDNPLIAHIGDF 74 Query: 68 SMVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125 + S P + L K FWPGPLTL+ + + +T L T R+P + Sbjct: 75 DDLPPLVSAIPEAGKKLMKAFWPGPLTLIFP--KSGLVPYGTTGGLDTVAVRMPVDPVAR 132 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LI G P+A PSAN SG+ S T H+ + +I +I+DGG IG+ESTI++V Sbjct: 133 ALIRLAGVPVAAPSANTSGRPSPTTADHVW-QDMNGKIDMIVDGGAVGIGVESTIIDVSG 191 Query: 186 EKKVRILRPGGLEIETLKRAISVELEY-------CVDETSTPQSPGMLKSHYAPRSQVRL 238 + V ILRPG + E + +E+ + P++PGM HYAP++++ L Sbjct: 192 DGPV-ILRPGAITQEMASAVLGIEVPLDPAIVSGPLKADVRPKAPGMKYKHYAPKAELTL 250 Query: 239 ------------RAIHVNPREALIRFGNV---PIKNIENAIISLNLSKTGKLKEAAFNLF 283 + +R G + K +A + ++ + + A NL+ Sbjct: 251 VEGDAEAVIETINRLAEEKLTQGLRVGIICTEETKEAYHAGVVRSMGIRTREETIAHNLY 310 Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 ++ DD A I S + LG AI NRL +AA Sbjct: 311 GVLREFDDLEADVIFSESFSRNHLGQAIMNRLTKAAGY 348 >gi|310644396|ref|YP_003949155.1| translation factor (sua5) [Paenibacillus polymyxa SC2] gi|309249347|gb|ADO58914.1| Putative translation factor (SUA5) [Paenibacillus polymyxa SC2] Length = 427 Score = 339 bits (870), Expect = 4e-91, Method: Composition-based stats. Identities = 121/343 (35%), Positives = 174/343 (50%), Gaps = 28/343 (8%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 IT +R+A L AG +A PTETVYGL D+R+ A+ ++ K RP+ NPLI H+S Sbjct: 83 ITAEKGIREAAVLLQAGETVAFPTETVYGLGADARSTKAVEAVFAAKGRPSDNPLIVHIS 142 Query: 66 DISMVK-KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 D + +K A ++ + L FWPGPLTLVL ++S + TA L T R+P Sbjct: 143 DAAQLKGMVAEINDTARALMNTFWPGPLTLVLPVVSQA-LSSRVTAGLDTVGVRMPDHPI 201 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 +LI G PLA PSANRSG+ S T +H+L + I I+DGG + +GLEST+V V Sbjct: 202 ALRLIAEAGCPLAAPSANRSGRPSPTLAQHVL-EDLKGRIGGILDGGPTGVGLESTVVQV 260 Query: 184 QCEKKVRILRPGGLEIETLKR-----AISVELEYCVDETS---TPQSPGMLKSHYAPRSQ 235 E V ILRPGG+ E L + L + + + P+SPGM +HYAPR + Sbjct: 261 GDEGTVTILRPGGVTAEQLATVARSVVLDPALAHTPGQDADSLAPRSPGMKYTHYAPRGR 320 Query: 236 VRLR---AIHVNPREALIRFGNVPIKNIENAIISLN-------------LSKTGKLKEAA 279 + + + + A+++ + L K L EAA Sbjct: 321 LSVVQGPSSVEVTGWIRAALAEATARGERTAVLAFDDHAAGYAGERVYTLGKLDALHEAA 380 Query: 280 FNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 L++ ++ D+ G + I + P GLG A+ NRL +AA R Sbjct: 381 QRLYSVLRRCDEDGVTYILAEACPPKGLGDAVMNRLLKAAGHR 423 >gi|168177474|ref|ZP_02612138.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum NCTC 2916] gi|226947365|ref|YP_002802456.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum A2 str. Kyoto] gi|182670936|gb|EDT82910.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum NCTC 2916] gi|226842540|gb|ACO85206.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum A2 str. Kyoto] Length = 351 Score = 339 bits (870), Expect = 4e-91, Method: Composition-based stats. Identities = 95/337 (28%), Positives = 163/337 (48%), Gaps = 26/337 (7%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 D + + +A + L G + PTETVYGL ++ + A++ ++E K RP NPLI H+S Sbjct: 13 IDEHVISEAGDILRQGGLVVFPTETVYGLGANALDKNAVKGIFEAKGRPQDNPLIVHISK 72 Query: 67 ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 + ++K + ++ L FWPGP+T++L I ++A L + R+P Sbjct: 73 MKDIEKLVQKIPSVAEKLMDKFWPGPMTIIL--KKKDIIPNETSAGLDSIGIRMPSNKIA 130 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 KLI G P+A PSAN SG+ S T+V+ + + ++ +I+ G S++G+EST+++ Sbjct: 131 MKLISMAGVPIAAPSANLSGKPSPTDVETCI-EDLDGKVNIILGGDNSEVGVESTVIDCT 189 Query: 185 CEKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 ILRPGG+ +E LK I + D+ P++PGM HYAP++ +++ Sbjct: 190 IN-PPCILRPGGITLEMLKEVDSNIYIDPAIMKKPDKDLKPKAPGMKYRHYAPKAPLKII 248 Query: 240 AIHVNPREALI------------RFGNVPIKNI---ENAIISLNLSKTGKLKEAAFNLFN 284 +N I + G + +++ L A NLF Sbjct: 249 KGDLNKTIEKINEMVQNYIDAEKKVGIIATDETIDNYRKGDVVSIGSRKDLNTIAHNLFY 308 Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 ++ D+ I + +G+AI NRL+++A Sbjct: 309 VLRSFDEKNVDLILSEAFEEKDMGVAIMNRLKKSAGY 345 >gi|222100697|ref|YP_002535265.1| Translation factor SUA5 [Thermotoga neapolitana DSM 4359] gi|221573087|gb|ACM23899.1| Translation factor SUA5 [Thermotoga neapolitana DSM 4359] Length = 335 Score = 339 bits (870), Expect = 4e-91, Method: Composition-based stats. Identities = 109/322 (33%), Positives = 165/322 (51%), Gaps = 12/322 (3%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D +LR+A + L G + PTETVYG+ D+ N A R+++EIK RPA NPLI H+ Sbjct: 13 DERSLREAADLLKKGEVVVFPTETVYGIGADAYNEEACRKIFEIKGRPADNPLIVHICSF 72 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 S +++ A + FWPGPLT++L + I + TA L T R+P K Sbjct: 73 SQLEEVADGYESFRDFLERFWPGPLTVILP-KKSQRISDVVTAGLPTVAVRMPAHPVALK 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LIE G P+A PSAN SG+ S T+V+H++ + + LI+D G + GLESTI+++ E Sbjct: 132 LIEMLGDPIAAPSANLSGRPSATSVEHVVEDFMG-RVSLILDAGNTPFGLESTIIDLSRE 190 Query: 187 KKVRILRPGGLEIETLKRAI-SVELEYCVDETS---TPQSPGMLKSHYAPRSQVRLRAIH 242 K V +LRPG +E+E LK + + V ++ P +PGM HYAP + L Sbjct: 191 KPV-LLRPGPVEVEKLKEFFPDLVVPDFVKKSEFRGKPLAPGMKYRHYAPSKPLILVENL 249 Query: 243 VNPREALIRFGNVPIKNIEN----AIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIA 298 ++ L F + + +E + + A NLF ++ A+ I Sbjct: 250 EKMKDVLREFPDHVVICVEERKELYRDRIVIGSLKNPYSIAQNLFAALREAEKREKEYII 309 Query: 299 FSSIPNHGLGIAINNRLERAAA 320 + G+ A+ NRL +AA+ Sbjct: 310 VEGLEERGILFAVMNRLRKAAS 331 >gi|260587375|ref|ZP_05853288.1| Sua5/YciO/YrdC/YwlC family protein [Blautia hansenii DSM 20583] gi|331083675|ref|ZP_08332786.1| hypothetical protein HMPREF0992_01710 [Lachnospiraceae bacterium 6_1_63FAA] gi|260542242|gb|EEX22811.1| Sua5/YciO/YrdC/YwlC family protein [Blautia hansenii DSM 20583] gi|330403886|gb|EGG83438.1| hypothetical protein HMPREF0992_01710 [Lachnospiraceae bacterium 6_1_63FAA] Length = 349 Score = 338 bits (869), Expect = 5e-91, Method: Composition-based stats. Identities = 104/335 (31%), Positives = 167/335 (49%), Gaps = 25/335 (7%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D +++A E L G +A PTETVYGL D N + ++Y K RP+ NPLI H++D+ Sbjct: 14 DLQIMKEAGEILKNGGLVAFPTETVYGLGGDGLNARSSEKIYTAKGRPSDNPLIIHIADM 73 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + K + + LA+ FWPGPLT++ ++++ +T L++ R+P Sbjct: 74 ESLNKIVRQIPEKAKLLAEKFWPGPLTMIFQ--KSSEVPYETTGGLESVAVRMPNHPVAL 131 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LI+ G +A PSAN SG+ S T +H+ + + I +I+DGG IGLESTIV+ Sbjct: 132 ALIQAGGGYIAAPSANTSGRPSPTKAEHV-AEDLSGRIDMIVDGGDVGIGLESTIVDFTE 190 Query: 186 EKKVRILRPGGLEIETLKRAIS-VELEYCV---DETSTPQSPGMLKSHYAPRSQVRLRAI 241 V ILRPG + ++ I V ++ + DE P++PGM HYAP++Q+ + Sbjct: 191 NIPV-ILRPGYINQAMIEAVIGSVRMDKGLLISDEKVKPKAPGMKYRHYAPKAQLVIVQG 249 Query: 242 HVNPREALI------------RFGNVP---IKNIENAIISLNLSKTGKLKEAAFNLFNYM 286 + N A I + G + K++ A + ++ + A +LF + Sbjct: 250 NTNKVTAHINQICEALQQEGKKVGVIATDETKDLYQANVVKSIGTREDEEGIARHLFGIL 309 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 + D+ I + +G AI NRL +AA Sbjct: 310 REFDEEDVDCIYSEAFDTPKIGQAIMNRLLKAAGH 344 >gi|251779596|ref|ZP_04822516.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083911|gb|EES49801.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 349 Score = 338 bits (869), Expect = 5e-91, Method: Composition-based stats. Identities = 104/334 (31%), Positives = 164/334 (49%), Gaps = 25/334 (7%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D +++A + + G +A PTETVYGL D+ N A+++++ K RP NPLI HV+ Sbjct: 14 DEEKIKEAAKVIKDGGIVAFPTETVYGLGSDALNEDAVKKIFIAKGRPQDNPLIVHVASK 73 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 ++ + ++ L +WPGPLTL+L + I +++A+L T R+P K Sbjct: 74 NIQSLVEDIPDIAQKLIDKYWPGPLTLIL--KKKSIIPNITSADLDTIGIRMPNNEIALK 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LIE +A PSAN SG+ S T+V+ + + ++ I+ G S IGLESTI++ Sbjct: 132 LIEMSNTVIAAPSANISGRPSPTDVERCI-EDLSGKVDCIVGGDKSNIGLESTILDCTVN 190 Query: 187 KKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241 + +LRPGG+ +E LK I + + P++PGM HYAP+++V++ + Sbjct: 191 PPL-VLRPGGITLEMLKEIDNRIEIDGAIMKKSTDDLKPKAPGMKYRHYAPKAKVKIISG 249 Query: 242 HVNPREALIR---------------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYM 286 ++ + N I + L L A NLF + Sbjct: 250 ERKKTIEKMKEMVDYYIDNNKKVCILTIEENEKEYNKGIKVVLGSRKNLLMVAQNLFESL 309 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + DD GA I + G+GIAI NRL +AA Sbjct: 310 RKCDDLGADIILAEAYEEKGVGIAIMNRLNKAAG 343 >gi|237793460|ref|YP_002861012.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum Ba4 str. 657] gi|229261243|gb|ACQ52276.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum Ba4 str. 657] Length = 351 Score = 338 bits (869), Expect = 5e-91, Method: Composition-based stats. Identities = 96/337 (28%), Positives = 163/337 (48%), Gaps = 26/337 (7%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 D + + +A + L G + PTETVYGL ++ + A++ ++E K RP NPLI H+S Sbjct: 13 IDEHVISEAGDILRQGGLVVFPTETVYGLGANALDKNAVKGIFEAKGRPQDNPLIVHISK 72 Query: 67 ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 + ++K + ++ L FWPGPLT++L I ++A L + R+P Sbjct: 73 MKDIEKLVQKIPSVAEKLMDKFWPGPLTIIL--KKKDIIPNETSAGLDSIGIRMPSNKIA 130 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 KLI G P+A PSAN SG+ S T+V+ + + ++ +I+ G S++G+EST+++ Sbjct: 131 MKLISMAGVPIAAPSANLSGKPSPTDVETCI-EDLDGKVNIILGGDNSEVGVESTVIDCT 189 Query: 185 CEKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 ILRPGG+ +E LK I + D+ P++PGM HYAP++ +++ Sbjct: 190 IN-PPCILRPGGITLEMLKEVDSNIYIDPAIMKKPDKDLKPKAPGMKYRHYAPKAPLKII 248 Query: 240 AIHVNPREALI------------RFGNVPIKNI---ENAIISLNLSKTGKLKEAAFNLFN 284 +N I + G + +++ L A NLF Sbjct: 249 KGDLNKTIEKINEMVQNYIDAQKKVGIIATDETIDNYKKGDVVSIGSRKHLNTIAHNLFY 308 Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 ++ D+ I + +G+AI NRL+++A Sbjct: 309 VLRSFDEKNVDLILSEAFEEKDMGVAIMNRLKKSAGY 345 >gi|220932631|ref|YP_002509539.1| Sua5/YciO/YrdC/YwlC family protein [Halothermothrix orenii H 168] gi|219993941|gb|ACL70544.1| Sua5/YciO/YrdC/YwlC family protein [Halothermothrix orenii H 168] Length = 364 Score = 338 bits (869), Expect = 5e-91, Method: Composition-based stats. Identities = 108/343 (31%), Positives = 167/343 (48%), Gaps = 27/343 (7%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 I+ + +++A+R+ L G +A PTETVYGL D+ + +A++++++ K RP NPLI Sbjct: 22 ILKLKENDAIREGASLLQKGEVVAFPTETVYGLGADATSESAVKKIFKAKGRPRDNPLIV 81 Query: 63 HVSDISMVKKHAS--VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 H+ ++ + + + L K FWPGPLTL+ + T I ++TA L++ R P Sbjct: 82 HIGEMDQLYDIIKNPLSDTTRRLIKHFWPGPLTLIFEKKET--IPGVTTAGLESVAVRFP 139 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + LI P+A PSAN SG S T +H+ + IP IIDGG S +G+EST Sbjct: 140 DNPVARALIGLSSVPVAAPSANLSGSPSPTRAEHVFKD-LKGRIPFIIDGGPSSVGVEST 198 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDET-STPQSPGMLKSHYAPRSQVRL 238 +++++ V ILRPGG+ E + E +E P SPGM HY+PR+ + L Sbjct: 199 VIDIRSGNPV-ILRPGGVTREEIAEVTGFSPENPDNEDRKKPLSPGMKYRHYSPRTPLYL 257 Query: 239 RAI-------HVNPREALIRFGNVPIKNIE------------NAIISLNLSKTGKLKEAA 279 I V + V + I + + K+ A Sbjct: 258 IEIRDFDKIRDVGEKYKGYNLALVITSETDMVLKESLKSFSTTGIKKVVIGSRNDFKKIA 317 Query: 280 FNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 +F+ ++ D I F +IP GLG AI NRL +AA + Sbjct: 318 ACMFDILRNLDTDNIDLIFFETIPEKGLGEAIMNRLAKAATGK 360 >gi|81428744|ref|YP_395744.1| Sua5 family translation factor [Lactobacillus sakei subsp. sakei 23K] gi|78610386|emb|CAI55436.1| Putative translation factor, SUA5 family [Lactobacillus sakei subsp. sakei 23K] Length = 342 Score = 338 bits (869), Expect = 5e-91, Method: Composition-based stats. Identities = 114/343 (33%), Positives = 175/343 (51%), Gaps = 20/343 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ T N + +A L+AG ++ PTETVYGL D+ NP A++++Y K RP+ NPL Sbjct: 1 METKRYT-VNQIEQAAAALNAGELVSFPTETVYGLGADATNPAAVKKVYAAKGRPSDNPL 59 Query: 61 ICHVSDISMVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I HV+ + V+ +A + L K FWPG LT++L L + T LKTA FR+ Sbjct: 60 IVHVASVETVEHYAVTSNPAFGQLVKAFWPGSLTIILPLKHGA-FDAVVTGGLKTAAFRM 118 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T LI+ G P+ PSAN SG+ S T H+L + +I +ID G + +GLES Sbjct: 119 PDNQVTLSLIKAAGVPIVGPSANTSGKPSPTLADHVL-HDLTGKIAGVIDDGPTGVGLES 177 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQV 236 T++++ V ILRPG + E ++R I + ++ V TP++PGM HYAP +QV Sbjct: 178 TVIDLSVATPV-ILRPGVVTQEAIERVIGPIMTNKHKVGAAETPKAPGMKYKHYAPNAQV 236 Query: 237 RL-------RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKE----AAFNLFNY 285 + A + + FG + + I + L E A+ +LF Sbjct: 237 YIVANPDDFDAAIDWASQQAVPFGVMAVDTILEKQAKVRFKDQFSLGESVVTASQHLFEG 296 Query: 286 MKIAD-DSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQSQR 327 ++ D + I G+G+A NRLE++A + S++ Sbjct: 297 LRYFDLNPEVKLILVQGFAKEGVGLAYMNRLEKSAGQKYFSKQ 339 >gi|194468252|ref|ZP_03074238.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus reuteri 100-23] gi|194453105|gb|EDX42003.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus reuteri 100-23] Length = 342 Score = 338 bits (868), Expect = 6e-91, Method: Composition-based stats. Identities = 106/327 (32%), Positives = 171/327 (52%), Gaps = 19/327 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 + +A + G +A PTETVYGL D+ N A++ +Y K RP+ NPLI HV+ I+MV Sbjct: 10 EIAQAAAAIKRGELVAFPTETVYGLGADATNEKAVKNVYLAKGRPSDNPLIVHVNSIAMV 69 Query: 71 KKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLI 128 +K+ A + + L FWPG LT++L + + T LKT FR P C T LI Sbjct: 70 EKYAAEIPDNARKLMDAFWPGSLTIILKIKKGA-LSKTVTGGLKTVAFRYPDCQPTLDLI 128 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E G P+ PSAN SG+ S T +H+ + +I I+D G +++G+EST++++ + Sbjct: 129 EEAGVPMVGPSANTSGKPSPTTAQHVY-HDLHGKIAGIVDNGPTRVGVESTVLDMSTDHP 187 Query: 189 VRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246 V ILRPG + + +++ I + V + TP++PGM HYAP++QV + + Sbjct: 188 V-ILRPGAVTKKDIEKVIGSIDLNHHKVGKNETPKAPGMKYKHYAPKAQVYIVDEDTDWD 246 Query: 247 EALIRFGNVPI--------KNIENAIISLN---LSKTGKLKEAAFNLFNYMKIADDS-GA 294 + + P K ++ ++ +N S +++A+ LF+ ++ DD Sbjct: 247 KVVEWIRQQPFDVGMMAEEKVLQQEVLPMNAIQFSLGKNVQDASARLFDGLRQFDDQPNI 306 Query: 295 SSIAFSSIPNHGLGIAINNRLERAAAP 321 I + P H LG A NRL ++A Sbjct: 307 KVIVTQAFPAHDLGGAYMNRLNKSAGG 333 >gi|302669642|ref|YP_003829602.1| Sua5/YciO/YrdC/YwlC family protein [Butyrivibrio proteoclasticus B316] gi|302394115|gb|ADL33020.1| Sua5/YciO/YrdC/YwlC family protein [Butyrivibrio proteoclasticus B316] Length = 340 Score = 338 bits (868), Expect = 6e-91, Method: Composition-based stats. Identities = 101/333 (30%), Positives = 162/333 (48%), Gaps = 25/333 (7%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 L++A + + G +A PTETVYGL D+ NP + +++Y K RP+ NPLI HV+++ Sbjct: 7 EGLKRAGQIIRDGGLVAFPTETVYGLGGDALNPMSSKKIYAAKGRPSDNPLIVHVANMDD 66 Query: 70 VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + V + LA FWPGPLT++++ + +T L T R+P +L Sbjct: 67 LAGIVKEVPEAARKLADAFWPGPLTMIMN--KNDKVPYETTGGLDTVAIRMPNNKIALEL 124 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I G +A PSAN SG+ S T ++ + + +I +IIDGG IGLESTIV++ Sbjct: 125 IRQSGGYIAAPSANTSGRPSPTVARYCV-EDLSGKIEMIIDGGQVGIGLESTIVDLTSPV 183 Query: 188 KVRILRPGGLEIETLKRAIS-VELEYCV---DETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 + ILRPG + + LK + + ++ + T P++PGM HYAP+ + + Sbjct: 184 PM-ILRPGYITAQMLKDVLGEISIDKTIIDSKSTERPKAPGMKYKHYAPKGDLMIVQGAQ 242 Query: 244 NPREALI------------RFGNVP---IKNIENAIISLNLSKTGKLKEAAFNLFNYMKI 288 + I R G + + + A + ++ + A LF ++ Sbjct: 243 EQVVSYINEQSALAASEGKRVGIIATDTTRELYKADVVKSVGNRQDERTIAHELFKVLRE 302 Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 DD + S + G+G AI NRL +AA Sbjct: 303 FDDENIDVMFSESFDDSGIGQAIMNRLLKAAGH 335 >gi|148378148|ref|YP_001252689.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum A str. ATCC 3502] gi|153934330|ref|YP_001382549.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum A str. ATCC 19397] gi|153936453|ref|YP_001386101.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum A str. Hall] gi|148287632|emb|CAL81697.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC 3502] gi|152930374|gb|ABS35874.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum A str. ATCC 19397] gi|152932367|gb|ABS37866.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum A str. Hall] Length = 351 Score = 338 bits (868), Expect = 6e-91, Method: Composition-based stats. Identities = 93/337 (27%), Positives = 163/337 (48%), Gaps = 26/337 (7%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 D + + +A + L G + PTETVYGL ++ + A++ +++ K RP NPLI H+S Sbjct: 13 IDEHVISEAGDILRQGGLVVFPTETVYGLGANALDKNAVKGIFQAKGRPQDNPLIVHISK 72 Query: 67 ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 + ++K + ++ L FWPGP+T++L I ++A L + R+P Sbjct: 73 MKDIEKLVQKIPSVAEKLMDKFWPGPMTIIL--KKKDIIPNETSAGLDSIGIRMPSNKIA 130 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 KLI G P+A PSAN SG+ S T+V+ + + ++ +I+ G S++G+EST+++ Sbjct: 131 MKLISMAGVPIAAPSANLSGKPSPTDVETCI-EDLDGKVNIILGGDNSEVGVESTVIDCT 189 Query: 185 CEKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 ILRPGG+ +E +K I + D+ P++PGM HYAP++ +++ Sbjct: 190 IN-PPCILRPGGITLEMVKEVDSNIYIDPAIMKKPDKDLKPKAPGMKYRHYAPKAPLKII 248 Query: 240 AIHVNPREALI------------RFGNVPIKNI---ENAIISLNLSKTGKLKEAAFNLFN 284 +N I + G + +++ L A NLF Sbjct: 249 KGDLNKTIEKINEMVQNYIDAEKKVGIIATDETIDNYRKGDVVSIGSRKDLNTIAHNLFY 308 Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 ++ D+ I + +G+AI NRL+++A Sbjct: 309 VLRSFDEKNVDLILSEAFEEKDMGVAIMNRLKKSAGY 345 >gi|291561899|emb|CBL40702.1| Sua5/YciO/YrdC/YwlC family protein [butyrate-producing bacterium SS3/4] Length = 356 Score = 338 bits (868), Expect = 6e-91, Method: Composition-based stats. Identities = 108/333 (32%), Positives = 160/333 (48%), Gaps = 26/333 (7%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 L +A E L G +A PTETVYGL ++ N A +++Y K RP+ NPLI H+S + + Sbjct: 23 GLLEAAEILKNGGLVAFPTETVYGLGANALNEEAAKKIYAAKGRPSDNPLIAHISCMEEL 82 Query: 71 KKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLI 128 P + LA+ +WPGPLT++ + +T L T R+P LI Sbjct: 83 PAIVKEIPEAGRKLAEKYWPGPLTMIFP--KKDIVPYGTTGGLDTVAVRMPVDPVANCLI 140 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 G P+A PSAN SG+ S T +H++ + +I +IIDGG IG+ESTIV+V E Sbjct: 141 HLAGVPIAAPSANTSGRPSPTKAEHVI-EDMDGKIEMIIDGGAVGIGVESTIVDVSGEIP 199 Query: 189 VRILRPGGLEIETLKRAIS-VELEY----CVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 +LRPG + IE L+ + V+++ V P++PGM HYAP++ + L + Sbjct: 200 -TLLRPGAITIEMLRETLGQVDIDPVILGPVSGDIKPKAPGMKYRHYAPKADMTLVEGDM 258 Query: 244 NPREALI------------RFGNVPIKNIENAIISLNL---SKTGKLKEAAFNLFNYMKI 288 + A I + G + + ++ NL + A NLF ++ Sbjct: 259 DKVVAYINEQTKKAEAEGKKVGIICTEESQDMYQGGNLEVIGSREHEETVAHNLFAVLRD 318 Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 D I S LG AI NRL +AA Sbjct: 319 FDARKVDCIFSESFSKDQLGQAIMNRLCKAAGY 351 >gi|147679163|ref|YP_001213378.1| putative translation factor [Pelotomaculum thermopropionicum SI] gi|146275260|dbj|BAF61009.1| putative translation factor [Pelotomaculum thermopropionicum SI] Length = 385 Score = 338 bits (868), Expect = 6e-91, Method: Composition-based stats. Identities = 109/338 (32%), Positives = 166/338 (49%), Gaps = 27/338 (7%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 ++ A+R+A L G +A PTETVYGL ++ + A+ R++E K RP+ NPLI HV+ Sbjct: 44 EAEAVREAGLILRGGGLVAFPTETVYGLGANALDGKAVARIFEAKGRPSDNPLIVHVAAA 103 Query: 68 SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 V + + L ++FWPGPLTLVL + + TA L T R+P Sbjct: 104 EEVGALVRGISDRARLLMEIFWPGPLTLVLP--AGKAVPAGVTAGLDTVAVRMPDHPVAA 161 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LI G P+A PSAN SG+ S T +H+L + I I+DGG + +G+EST+++V Sbjct: 162 ALIRAAGVPVAAPSANISGRPSPTTAEHVL-QDLNGRIEAILDGGPAGLGVESTVLDVTV 220 Query: 186 EKKVRILRPGGLEIETLKRAIS-VELEYCVDETSTP-----QSPGMLKSHYAPRSQVRLR 239 + ILRPGG+ E L+ + VE++ +SPGM HYAPR+ + L Sbjct: 221 PVPL-ILRPGGVTPEELREVLGTVEVDPSAAAGLGKAAGRYRSPGMKYIHYAPRAPLVLI 279 Query: 240 AIHVNPREALIR---------------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFN 284 + A IR + +A + + + GK + A L+ Sbjct: 280 EGRPDAVAAKIRELAGEQQAAGRRVGILTYADSGDFSSAGVVVLAGQRGKPETVAAGLYA 339 Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 ++ D+ G I + G+G+A+ NRL +AA R Sbjct: 340 ALRRFDELGVDLILAEGVEEGGVGLAVMNRLRKAAGGR 377 >gi|71394063|gb|AAZ32102.1| putative translation factor [uncultured euryarchaeote Alv-FOS5] Length = 342 Score = 338 bits (868), Expect = 7e-91, Method: Composition-based stats. Identities = 111/328 (33%), Positives = 169/328 (51%), Gaps = 22/328 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + A + G +A PTETVYGL D+ N A++R++E K RP NPLI H++ Sbjct: 16 DKKISPAALAIREGKLVAFPTETVYGLGADALNAEAVKRIFEAKGRPQDNPLIVHIAHEE 75 Query: 69 MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + A P + L FWPGPLTL+L I +TA L T R+P +K Sbjct: 76 GIYNLAREVPRKAKDLIDRFWPGPLTLILKKSPI--IPDRTTAGLDTVAIRMPSHPIARK 133 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LI P+A PSAN SG+ S T KH++ + ++ IIDGG + +GLEST++++ + Sbjct: 134 LILLSERPIAAPSANTSGKPSPTTGKHVI-DDLYGKVEYIIDGGPTNVGLESTVIDLTTD 192 Query: 187 KKVRILRPGGLEIETLKRAIS-VELEYCVDE---TSTPQSPGMLKSHYAPRSQVRLRAIH 242 + +LRPGG+ + L+ + V++ V T P+SPGM HYAP +++ L Sbjct: 193 PPM-LLRPGGVTLGQLEEVLGKVDVHPAVFGKRITGNPRSPGMKYRHYAPDARLILVEGP 251 Query: 243 VNPREALI----------RFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDS 292 + I + G + + N I +NL K+ +E A +F+ ++ D Sbjct: 252 RDKVVKRINEMLGSLGTNKIGVLAVYGEYNQGIVVNLGKST--EEVARKVFDALRDLDRR 309 Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAA 320 GA I IP+ LG+A+ NRL +AA+ Sbjct: 310 GADIIIAEGIPDTELGLAVMNRLRKAAS 337 >gi|260663284|ref|ZP_05864175.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus fermentum 28-3-CHN] gi|260552136|gb|EEX25188.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus fermentum 28-3-CHN] Length = 342 Score = 338 bits (867), Expect = 9e-91, Method: Composition-based stats. Identities = 105/337 (31%), Positives = 165/337 (48%), Gaps = 20/337 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ + I +++A + + AG +A PTETVYGL D+ N A++++Y K RP+ NPL Sbjct: 1 MKTV-IFQPAEVKQAAKLIQAGQLVAFPTETVYGLGADATNEEAVKQVYLAKGRPSDNPL 59 Query: 61 ICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I HVS ++MV+ A + + L FWPG LT++L T + + T L T FR Sbjct: 60 IVHVSSLAMVEHFAAEIPAKAKQLMDRFWPGSLTIILRFKPGT-LSKMVTGGLDTVAFRF 118 Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P C T LI G P+ PSAN SG+ S T H+ + +I IID G +++G+ES Sbjct: 119 PDCQPTLDLISQAGVPIVGPSANTSGKPSPTTANHVY-HDLNNKIAGIIDNGPTRVGVES 177 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQV 236 T++++ + V ILRPG + + ++ I + V + P++PGM HYAP +QV Sbjct: 178 TVLDMSTSQPV-ILRPGAVTKQDIEGVIGSIDINHHQVKQDEVPKAPGMKYKHYAPNAQV 236 Query: 237 RLRAIHVNPREALIRFG----NVPIKNIENAIISLNLSKTGK-------LKEAAFNLFNY 285 + + E V + + + + S ++EA+ +LF Sbjct: 237 YIVDPADDWGEVAAVIAQSKEQVGLMATDQVLHAHVWSVQADQFSLGTGVQEASAHLFEG 296 Query: 286 MKIAD-DSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 ++ D I GLG A NRL ++A Sbjct: 297 LRDFDNQEEIHQIFCQGFEPTGLGAAYMNRLNKSAGG 333 >gi|169826582|ref|YP_001696740.1| hypothetical protein Bsph_0998 [Lysinibacillus sphaericus C3-41] gi|168991070|gb|ACA38610.1| Hypothetical ywlC protein [Lysinibacillus sphaericus C3-41] Length = 344 Score = 337 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 116/347 (33%), Positives = 179/347 (51%), Gaps = 24/347 (6%) Query: 1 MQ-IMSITDSNA-----LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR 54 M+ + + DSN +A + L+AG +A PTETVYGL + N TA+++++E K R Sbjct: 1 METVCKVVDSNVNSQINYTQAVDILNAGEVVAFPTETVYGLGAVATNDTAVKKIFEAKGR 60 Query: 55 PAMNPLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK 113 P+ NPLI HV V + + ++ LFWPGPLTLV+ + TA L Sbjct: 61 PSDNPLIVHVGTKEEVTNYIEHISEIAKQCIDLFWPGPLTLVMPAKPNV-LAQSVTAGLS 119 Query: 114 TACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172 T R+P L++ PLA PSANRSG+ S T H+L + IP I+DGG + Sbjct: 120 TVGIRMPDHPVALALLQQLQKPLAAPSANRSGKPSPTEAIHVL-DDLGGYIPYILDGGST 178 Query: 173 KIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDE---TSTPQSPGMLKSH 229 IGLEST+++V E V ILRPGG+ E L+ I ++ E TP++PGM +H Sbjct: 179 GIGLESTVLDVTHEPPV-ILRPGGITKEILEATIGPVIQPTKIEQKLEETPKAPGMKYTH 237 Query: 230 YAPRSQVRLRAIHVNP--------REALIRFGNVPIKNIEN--AIISLNLSKTGKLKEAA 279 YAP + V L H ++ + +N ++ A ++ + G ++ Sbjct: 238 YAPNAPVYLINCHDGEVSEAVQQLQQQGHEVALLAPQNFQHIKADFYFSVGEEGSKEDMG 297 Query: 280 FNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326 +L++ ++ D + A+ I ++ G+G AI NRLE+A+ + S Sbjct: 298 ASLYHALRACDKTTATVILATTTSTEGVGAAIMNRLEKASGGKWYSL 344 >gi|167768294|ref|ZP_02440347.1| hypothetical protein CLOSS21_02850 [Clostridium sp. SS2/1] gi|317497775|ref|ZP_07956088.1| Sua5/YciO/YrdC/YwlC family protein [Lachnospiraceae bacterium 5_1_63FAA] gi|167709818|gb|EDS20397.1| hypothetical protein CLOSS21_02850 [Clostridium sp. SS2/1] gi|291560271|emb|CBL39071.1| translation factor SUA5 [butyrate-producing bacterium SSC/2] gi|316894964|gb|EFV17133.1| Sua5/YciO/YrdC/YwlC family protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 350 Score = 337 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 99/343 (28%), Positives = 166/343 (48%), Gaps = 27/343 (7%) Query: 2 QIMSITD-SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 +I ++ D + +A E + AG +A PTETVYGL + P A +++Y K RP+ NPL Sbjct: 7 KINNMEDCKKDMEEAGELIKAGELVAFPTETVYGLGGNGLLPDAAKKIYAAKGRPSDNPL 66 Query: 61 ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I HV D+ MV+ + + + FWPGP+T++L + T L T R+ Sbjct: 67 ILHVCDMQMVESLVKEIPDNARRAMEHFWPGPMTVILQ--KADQVPDCVTGGLDTVAIRM 124 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P +LI G P+A PSAN SG+ S T +H++ + +IP+I+DGG +G+ES Sbjct: 125 PDHPVALELIRRSGVPIAAPSANTSGRPSPTKAEHVM-EDLHGKIPMILDGGAVMVGVES 183 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVEL----EYCVDETSTPQSPGMLKSHYAPRS 234 TI++ V ILRPG + E+++ + E+ + P++PGM HYAP++ Sbjct: 184 TIIDFTEIVPV-ILRPGWITKESMEEFLGCEVLMNTSLKASDHGIPRAPGMKYKHYAPKA 242 Query: 235 QVRL-------------RAIHVNPREALIRFGNVP---IKNIENAIISLNLSKTGKLKEA 278 ++ L + +E + G + K++ A +++ + L+ Sbjct: 243 EMVLVLGDDQEKVVNHINQLAKEQKEQGKKIGIIASDETKDLYQADEVVSVGQRAHLETV 302 Query: 279 AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 +L++ ++ D I L AI NR+ +AA Sbjct: 303 TAHLYDVLREFDHKDVDMIYSEGFEGEPLSEAIMNRMVKAAGH 345 >gi|257885491|ref|ZP_05665144.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 1,231,501] gi|257821347|gb|EEV48477.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 1,231,501] Length = 331 Score = 337 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 108/327 (33%), Positives = 170/327 (51%), Gaps = 20/327 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E L AG +A PTETVYGL ++ P A+++++ +K RP NPLI HV+ VK Sbjct: 1 MQEAAEALKAGELVAFPTETVYGLGANALLPNAVKKVFSVKGRPQDNPLIVHVASFEQVK 60 Query: 72 KHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 ++ P + + K FWPGPLTL+ + T + + T L TA FR+P T ++I+ Sbjct: 61 EYVDNFHPAAEKIVKNFWPGPLTLIFKIKKDT-LPSVVTGGLSTAAFRMPDNKKTLEVIK 119 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK- 188 G PL PSAN SG+ S T H+ + +I IID G ++IG+EST++++ Sbjct: 120 LSGVPLVGPSANTSGKPSPTTADHVY-HDLQGKITGIIDDGATRIGVESTVLDLSDPTAM 178 Query: 189 VRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLRAI---- 241 ILRPG + E ++ I + ++ V E TP++PGM HY+P ++V + Sbjct: 179 PMILRPGAVTKEQIEAVIESPVAIDQHLVKENETPKAPGMKYKHYSPDTRVLMVRDGDWS 238 Query: 242 --HVNPREALIRFGNVPIKNIENAI----ISLNLSKTGKLKEAAFNLFNYMKIADD--SG 293 + IR G + I + + ++ + ++ AA LF ++ D+ G Sbjct: 239 TAVQWAKNKKIRAGVIASPEIADQVRTDTAAVYMYNDNSVEAAAKGLFAGLRGLDEPTLG 298 Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAA 320 I P GLG A NRL++AA Sbjct: 299 LDLIFVQVYPETGLGNAYMNRLKKAAG 325 >gi|255263958|ref|ZP_05343300.1| Sua5/YciO/YrdC family protein [Thalassiobium sp. R2A62] gi|255106293|gb|EET48967.1| Sua5/YciO/YrdC family protein [Thalassiobium sp. R2A62] Length = 354 Score = 337 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 135/313 (43%), Positives = 181/313 (57%), Gaps = 13/313 (4%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 ++ +A L AG +A+PTETVYGL D+RN TA +YE K RP+ NPLI HV+D+S Sbjct: 53 SISRAAALLQAGGLVALPTETVYGLGADARNGTACAGIYEAKGRPSFNPLIVHVADVSHA 112 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129 + A ++ LA FWPGPLTLVL L I L TA L T RVP T+ L+ Sbjct: 113 RHFAVFSDVAEVLAATFWPGPLTLVLPLRPDAVIASLVTAGLHTVAIRVPRHPVTRDLLA 172 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 +G P+A PSAN SG+IS T H++ + I +I+ G S +G+ESTI++ Sbjct: 173 AFGGPIAAPSANPSGRISATTPDHVI-DGLDGRIDAVIEAGASSVGVESTIISCV--DTP 229 Query: 190 RILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREAL 249 +LR GGL + ++ + + + +T +PG L SHYAP+ +VRL A H E L Sbjct: 230 MLLRQGGLPVSEIEAVLDRPIGFDTS-PATLAAPGQLASHYAPKGRVRLNANHAIGDEIL 288 Query: 250 IRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGI 309 + FG+V L LS+TG L EAA LF + D GA++IA + IP HGLG Sbjct: 289 LGFGDVTGD--------LTLSETGDLVEAARVLFRRLHELDAMGATAIAVAPIPEHGLGA 340 Query: 310 AINNRLERAAAPR 322 AIN+RL RAAAPR Sbjct: 341 AINDRLRRAAAPR 353 >gi|288931240|ref|YP_003435300.1| Sua5/YciO/YrdC/YwlC family protein [Ferroglobus placidus DSM 10642] gi|288893488|gb|ADC65025.1| Sua5/YciO/YrdC/YwlC family protein [Ferroglobus placidus DSM 10642] Length = 334 Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats. Identities = 111/324 (34%), Positives = 168/324 (51%), Gaps = 24/324 (7%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 + + + A E + G +A PTETVYGL D+ N A+R+++E+K RPA NPLI HVS + Sbjct: 16 EDDKIGIAAEEIKKGNLVAFPTETVYGLGADALNEKAVRKIFEVKGRPADNPLIVHVSSV 75 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + + A + ++ L F+PGPLTLV+ + ++TA L T R+P K Sbjct: 76 DQIYEIAQPNEIAKKLIDAFFPGPLTLVM---KNKKVPKITTAGLDTVAVRMPDHKVALK 132 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LIE P+A PSAN+SG+ S T +H+L + + +IIDGG +KIGLEST+V+ Sbjct: 133 LIELSETPIAAPSANKSGKPSPTKAEHVL-EDLGNLVDVIIDGGETKIGLESTVVD-TTV 190 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL-------- 238 V ILRPG + E L+ + V+ ++ S +SPGM HYAP ++ + Sbjct: 191 YPVEILRPGAITKEELEEYVDVK---YAEDFSVAKSPGMKYKHYAPDAETIVLVGKNFLK 247 Query: 239 ----RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGA 294 A + + + ++ N +I N + L+E A NLF ++ D Sbjct: 248 KATQIAEDFVKKGYRVGVAGLNLEEKRNDVIYKNFGR--NLEEMAKNLFKVLRELDKE-C 304 Query: 295 SSIAFSSIPNHGLGIAINNRLERA 318 I + G+G AI NRL +A Sbjct: 305 DVIIVQGVEEKGIGKAIMNRLYKA 328 >gi|332971797|gb|EGK10745.1| Sua5/YciO/YrdC/YwlC family protein [Desmospora sp. 8437] Length = 361 Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats. Identities = 111/343 (32%), Positives = 174/343 (50%), Gaps = 26/343 (7%) Query: 2 QIMSITDSN---ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58 QI TD + +R+A L G +A PTETVYGL D+ +P A+ +Y K RP+ N Sbjct: 16 QIDGATDLDQNPVIREAAALLREGHLVAFPTETVYGLGADATDPDAVASIYRAKGRPSDN 75 Query: 59 PLICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 PLI H++D + + P LA+ FWPGPLTL+L ++ P TA L T Sbjct: 76 PLIVHLADEQGLSEWVREIPEPGRLLARRFWPGPLTLILPHRG--NLAPQVTAGLPTVGV 133 Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P L++ G P+A PSANRSG+ S T H+ + + I I+DGG++ +G+ Sbjct: 134 RIPSHPVALALLKNCGLPVAAPSANRSGKPSPTRAGHVWTD-LGGRIDAILDGGVTGVGV 192 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAI-SVELEYCVDET-STPQSPGMLKSHYAPRS 234 EST+V+V V +LRPGG+ +E L+ + V ++ + E +P+SPGM HYAP Sbjct: 193 ESTVVDVTVNPPV-LLRPGGVTLEMLREVVREVRVDPGLREEWESPRSPGMKYRHYAPGG 251 Query: 235 QV------------RLRAIHVNPREALIRFGNVPIKN---IENAIISLNLSKTGKLKEAA 279 ++ R++ + ++ + G + + + A + + A Sbjct: 252 EMWVITGEGEAQVSRIQRMADEAMQSGKKTGILCTEEHASLYRADWIVVCGTRSRPDTIA 311 Query: 280 FNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 L+ ++ D+ GA IA P G+ ++ NRL +AA R Sbjct: 312 RELYGALRRFDEVGAQWIAAEGFPPRGVLHSVMNRLSKAAEGR 354 >gi|308071165|ref|YP_003872770.1| hypothetical protein PPE_04472 [Paenibacillus polymyxa E681] gi|305860444|gb|ADM72232.1| Conserved hypothetical protein [Paenibacillus polymyxa E681] Length = 415 Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats. Identities = 116/344 (33%), Positives = 168/344 (48%), Gaps = 28/344 (8%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 I +R+A L AG +A PTETVYGL D+R+ A+ ++ K RP+ NPLI H+ Sbjct: 70 RIAAEKGIREASVLLQAGETVAFPTETVYGLGADARSTKAVEAVFVAKGRPSDNPLIVHI 129 Query: 65 SDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 SD ++ ++ + L +FWPGPLTLVL ++ + TA L T R+P Sbjct: 130 SDADQLEGMVSEINDTARELMNMFWPGPLTLVLPVVPQA-LSSRVTAGLDTVGVRMPDHP 188 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 +LI G PLA PSANRSG+ S T +H+ + I I+DGG + +GLEST+V Sbjct: 189 IALRLIAEAGCPLAAPSANRSGRPSPTLARHV-REDLEGRIGGILDGGPTGVGLESTVVQ 247 Query: 183 VQCEKKVRILRPGGLEIETLKR-----AISVELEYCVDETS---TPQSPGMLKSHYAPRS 234 + V ILRPGG+ E L + L E + P+SPGM +HYAPR Sbjct: 248 AGDDGTVTILRPGGVTAEQLATVARAVVLDPALAATPGEDADSPAPRSPGMKYTHYAPRG 307 Query: 235 QVRLRAIHVNPR---EALIRFGNVPIKNIENAIISLN-------------LSKTGKLKEA 278 ++ + + + + A+++ + L K L EA Sbjct: 308 RLSVVQGPSSVKVTGWIRAALAEASARGERTAVLAFDEHAAGYAGERVYTLGKLDALHEA 367 Query: 279 AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 A L+ ++ D+ G + I S P GLG A+ NRL +AA R Sbjct: 368 AQRLYGVLRRCDEDGVTYILSESCPPKGLGDAVMNRLLKAAGHR 411 >gi|188589112|ref|YP_001919885.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum E3 str. Alaska E43] gi|188499393|gb|ACD52529.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum E3 str. Alaska E43] Length = 349 Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats. Identities = 104/334 (31%), Positives = 164/334 (49%), Gaps = 25/334 (7%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D +++A + + G +A PTETVYGL D+ N A+++++ K RP NPLI HV+ Sbjct: 14 DEEKIKEAAKVIKDGGIVAFPTETVYGLGSDALNEDAVKKIFIAKGRPQDNPLIVHVASK 73 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 ++ + ++ L +WPGPLTL+L + I +++A+L T R+P K Sbjct: 74 NIQSLVEDIPDIAQKLIDKYWPGPLTLIL--KKKSIIPNITSADLDTIGIRMPNNEIALK 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LIE +A PSAN SG+ S T+V+ + + ++ I+ G S IGLESTI++ Sbjct: 132 LIEMSNTVIAAPSANISGRPSPTDVERCI-EDLSGKVDCIVGGDKSNIGLESTILDCTVN 190 Query: 187 KKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241 + +LRPGG+ +E LK I + + P++PGM HYAP+++V++ + Sbjct: 191 PPL-VLRPGGITLEMLKDIDNRIEIDGAIMKKSTDDLKPKAPGMKYRHYAPKAKVKIISG 249 Query: 242 HVNPREALIR---------------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYM 286 ++ + N I + L L A NLF + Sbjct: 250 ERKKTIEKMKEMVDYYIDNNKKVCILTIEENEKEYNKGIKVVLGSRENLLMVAQNLFESL 309 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + DD GA I + G+GIAI NRL +AA Sbjct: 310 RKCDDLGADIILAEAYEEKGVGIAIMNRLNKAAG 343 >gi|332653079|ref|ZP_08418824.1| Sua5/YciO/YrdC/YwlC family protein [Ruminococcaceae bacterium D16] gi|332518225|gb|EGJ47828.1| Sua5/YciO/YrdC/YwlC family protein [Ruminococcaceae bacterium D16] Length = 341 Score = 337 bits (865), Expect = 2e-90, Method: Composition-based stats. Identities = 104/340 (30%), Positives = 168/340 (49%), Gaps = 25/340 (7%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M +T + + +A L G + IPTETVYGL + N A+ ++E K RP NPL Sbjct: 1 MNTKRLT-EHDIDEAAAILRDGGLLGIPTETVYGLGANGLNEEAVAHIFEAKGRPQDNPL 59 Query: 61 ICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I H+ D S ++++ PL + LA+ +WPGP+T++L + TA L T R Sbjct: 60 ILHIPDASWLERYCKDIPLTAYQLAEAYWPGPMTMILKRKDI--VPDAVTAGLDTVGMRC 117 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P +++I G P+A PS N SG+ S T +H+L + +I I+DGG +G+ES Sbjct: 118 PAHPLCREIIAASGVPVAAPSGNTSGRPSPTTAQHML-EDMDGKIDAIVDGGSCSVGVES 176 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAIS-----VELEYCVDETSTPQSPGMLKSHYAPR 233 TI+++ E R+LRPGG+ +E L+ + + + P++PGM HYAP+ Sbjct: 177 TIIDLT-ETPARLLRPGGITLEQLEAVLGEVAVDPAVTRLMGAGEQPKAPGMKYRHYAPK 235 Query: 234 SQVRLR-----------AIHVNPREALIRFGNVPIKNIENAI--ISLNLSKTGKLKEAAF 280 + V + A H + +I F + ++L G +E A Sbjct: 236 APVTVVTGDPKKSAEYIASHAGAEDGIICFDEFLPLFTRRSETRPVMDLGPAGDKEEQAR 295 Query: 281 NLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++F+ ++ D + +I G+G+AI NRL +AA Sbjct: 296 HIFDALRSFDHTSVPAIWAQCPDTTGIGLAIANRLNKAAG 335 >gi|281411518|ref|YP_003345597.1| Sua5/YciO/YrdC/YwlC family protein [Thermotoga naphthophila RKU-10] gi|281372621|gb|ADA66183.1| Sua5/YciO/YrdC/YwlC family protein [Thermotoga naphthophila RKU-10] Length = 335 Score = 337 bits (865), Expect = 2e-90, Method: Composition-based stats. Identities = 115/321 (35%), Positives = 169/321 (52%), Gaps = 12/321 (3%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 + L++A E L G I PTETVYG+ D+ N A ++++E+K RPA NPLI H+ + Sbjct: 13 NEKVLKEAVELLQNGEVIIFPTETVYGIGADAYNEEACKKIFELKGRPADNPLIVHIHSL 72 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 +++ A L K FWPGPLT++L + I P+ TA L T R+P K Sbjct: 73 EQLEEIAEGYEPHLDFLKKFWPGPLTVIL-RKKSEKIPPVVTAGLPTVAVRMPAHPVALK 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LIE +G+P+A PSAN SG+ S TNVKH++ + K + LIID G + GLESTIV++ E Sbjct: 132 LIELFGNPIAAPSANISGRPSATNVKHVVEDFMGK-VKLIIDAGDTPFGLESTIVDLTKE 190 Query: 187 KKVRILRPGGLEIETLKRAI-SVELEYCVDE---TSTPQSPGMLKSHYAPRSQVRLRAIH 242 K V +LRPG +E+E LK + + V + P +PGM HYAP + L Sbjct: 191 KPV-LLRPGPVEVERLKELFPGLVVPDFVRKGNFKGRPLAPGMKYRHYAPLKPLILVEDL 249 Query: 243 VNPREALIRFGNVPI----KNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIA 298 E L ++ + + + E + + K A N+F+ ++ A+ G I Sbjct: 250 TKMEEVLKKYPDHVVICVQERKELYDDRIVVGSLKKPYSIAQNIFSALREAEKMGKEYII 309 Query: 299 FSSIPNHGLGIAINNRLERAA 319 G+ A+ NRL +AA Sbjct: 310 VEGFEERGILFAVMNRLRKAA 330 >gi|187933769|ref|YP_001884698.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum B str. Eklund 17B] gi|187721922|gb|ACD23143.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum B str. Eklund 17B] Length = 349 Score = 337 bits (865), Expect = 2e-90, Method: Composition-based stats. Identities = 106/334 (31%), Positives = 162/334 (48%), Gaps = 25/334 (7%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D +++A + + G +A PTETVYGL D+ N A+++++ K RP NPLI HV+ Sbjct: 14 DEEKMKEAAQIIKDGGIVAFPTETVYGLGSDALNEDAVKKIFIAKGRPQDNPLIVHVASK 73 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 ++ + ++ L +WPGPLTL+L + I +++ANL T R+P K Sbjct: 74 NIQSLVEDIPDIAQRLIDKYWPGPLTLIL--KKKSIIPDMTSANLDTIGIRMPNNEIALK 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LIE +A PSAN SG+ S T+V+ + + + I+ G S IGLESTI++ Sbjct: 132 LIEMSNTVIAAPSANISGRPSPTDVERCI-DDLSGRVDCIVGGKKSDIGLESTILDCTVN 190 Query: 187 KKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241 + +LRPGG+ +E LK I + P++PGM HYAP+++V++ + Sbjct: 191 PPI-VLRPGGITLEMLKEIDNRIEIDGAIMKKSTGDLKPKAPGMKYRHYAPKAKVKIISG 249 Query: 242 HVNPREALIR---------------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYM 286 I+ + N I + L L A NLF + Sbjct: 250 ERKKTIEKIKEIVDYYIDNNKKVCILTIQENEKEYNKGIKVVLGSKENLLMVAQNLFESL 309 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + DD GA I + G+GIAI NRL +AA Sbjct: 310 RKCDDLGADVILAEAYEEKGVGIAIMNRLNKAAG 343 >gi|83591784|ref|YP_425536.1| translation factor SUA5 [Rhodospirillum rubrum ATCC 11170] gi|83574698|gb|ABC21249.1| translation factor SUA5 [Rhodospirillum rubrum ATCC 11170] Length = 322 Score = 337 bits (865), Expect = 2e-90, Method: Composition-based stats. Identities = 127/324 (39%), Positives = 181/324 (55%), Gaps = 17/324 (5%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 + AL +A L AG +A PTETVYGL ++ + TA+ +Y K RP+ NPLI H+ D+ Sbjct: 8 EGAALAQAARILAAGGLVAFPTETVYGLGANALDDTAVASIYAAKGRPSFNPLIVHLPDL 67 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + H +VD + LA FWPGPLTLVL + + L +A L TA R P + Sbjct: 68 DAARAHVAVDGRAERLAAAFWPGPLTLVLPRRAGCRLSLLVSAGLDTAAIRCPDHPLALE 127 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+ PLA PSAN SG +S T H+ + + L++DGG +GLEST++++ Sbjct: 128 LLRACALPLAAPSANPSGAVSPTTAAHV-REGLGGRVDLVLDGGACGVGLESTVLDLSTP 186 Query: 187 KKVRILRPGGLEIETLKRAISVELEYC---VDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 + + +LRPG + L + ++ + + P+SPG L SHYAP ++VRL A + Sbjct: 187 RAL-LLRPGAISRAMLAEVLGEPVDRPSATPSDPTAPRSPGQLLSHYAPTARVRLNASAI 245 Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303 P E L+ FG V A +L+LS +G L+EAA NLF+ ++ D ++IA S IP Sbjct: 246 GPGEVLLGFGPV-------AGATLSLSPSGDLREAAANLFSMLRALDADHPATIAVSPIP 298 Query: 304 NH----GLGIAINNRLERAAAPRN 323 GL AIN+RL RAAAPR Sbjct: 299 ETDPGDGLAAAINDRLRRAAAPRG 322 >gi|153816408|ref|ZP_01969076.1| hypothetical protein RUMTOR_02661 [Ruminococcus torques ATCC 27756] gi|317502463|ref|ZP_07960626.1| hypothetical protein HMPREF1026_02571 [Lachnospiraceae bacterium 8_1_57FAA] gi|331089289|ref|ZP_08338191.1| hypothetical protein HMPREF1025_01774 [Lachnospiraceae bacterium 3_1_46FAA] gi|145846243|gb|EDK23161.1| hypothetical protein RUMTOR_02661 [Ruminococcus torques ATCC 27756] gi|316896148|gb|EFV18256.1| hypothetical protein HMPREF1026_02571 [Lachnospiraceae bacterium 8_1_57FAA] gi|330405841|gb|EGG85370.1| hypothetical protein HMPREF1025_01774 [Lachnospiraceae bacterium 3_1_46FAA] Length = 507 Score = 337 bits (865), Expect = 2e-90, Method: Composition-based stats. Identities = 99/336 (29%), Positives = 156/336 (46%), Gaps = 25/336 (7%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 + + +A L G +A PTETVYGL D+ A + Y K RP+ NPLI H+++ Sbjct: 13 INEEIIEEAGMILKNGGLVAFPTETVYGLGADALKEEAAMKTYAAKGRPSDNPLIVHIAE 72 Query: 67 ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFT 124 ++K A ++ + LA FWPGPLT++ + + + +T L T R+P Sbjct: 73 YEDLRKIAVNIPAETDALAAHFWPGPLTMIFE--KSEVVPYGTTGGLDTVAVRMPTDEVA 130 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + LI G ++ PSAN SG+ S T +H+ + + +I +I+DGG +IGLESTI+++ Sbjct: 131 RALIRAAGGFVSAPSANTSGRPSPTLAEHV-AEDLGGKIDMILDGGAVEIGLESTILDMT 189 Query: 185 CEKKVRILRPGGLEIETLKRAISV----ELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 + ILRPG + E + I E + P++PGM HYAP++++ + Sbjct: 190 VTPPM-ILRPGAITAEMFEEVIGKVDVDETLLVAESEKAPKAPGMKYRHYAPKAKLMIVE 248 Query: 241 IHVNPREALIR---------------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNY 285 + IR + N+ K A NL+ Sbjct: 249 GDLREEIFAIRQLAYKAYKEGRKVGVIATTETLPFYKYGVVKNIGTRENEKTIARNLYRV 308 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 ++ D+ I S G+G AI NRLE+AA Sbjct: 309 LREFDEEDVEEIYSESFAAQGIGKAIMNRLEKAAGH 344 >gi|170287882|ref|YP_001738120.1| Sua5/YciO/YrdC/YwlC family protein [Thermotoga sp. RQ2] gi|170175385|gb|ACB08437.1| Sua5/YciO/YrdC/YwlC family protein [Thermotoga sp. RQ2] Length = 335 Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats. Identities = 117/321 (36%), Positives = 168/321 (52%), Gaps = 12/321 (3%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L++A E L G I PTETVYG+ D+ N A ++++E+K RPA NPLI H+ Sbjct: 13 DEKVLKEAVELLQNGEVIIFPTETVYGIGADAYNEEACKKIFELKGRPADNPLIVHIHSF 72 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 +++ A L K FWPGPLT++L + I P+ TA L T R+P K Sbjct: 73 EQLEEIAEGYEPHLDFLKKFWPGPLTVIL-RKKSEKIPPVVTAGLPTVAMRMPAHPVALK 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LIE +GHP+A PSAN SG+ S TNVKH++ + K + LIID G + GLESTIV++ E Sbjct: 132 LIELFGHPIAAPSANISGRPSATNVKHVVEDFMGK-VKLIIDAGDTPFGLESTIVDLTKE 190 Query: 187 KKVRILRPGGLEIETLKRAI-SVELEYCVDET---STPQSPGMLKSHYAPRSQVRLRAIH 242 K V +LRPG +E+E LK + + V + P +PGM HYAP + L Sbjct: 191 KPV-LLRPGPVEVERLKELFPGLVVPDFVRKGNFEGRPLAPGMKYRHYAPLKPLILVEDL 249 Query: 243 VNPREALIRFGNVPIKNIEN----AIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIA 298 E L ++ + + +E + + K A N+F+ ++ A+ G I Sbjct: 250 TKMEEVLKKYPDHVVICVEERKELYDDRIVVGSLKKPYSIAQNIFSALREAEKMGKEYII 309 Query: 299 FSSIPNHGLGIAINNRLERAA 319 G+ A+ NRL +AA Sbjct: 310 VEGFEERGILFAVMNRLRKAA 330 >gi|110800830|ref|YP_696878.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens ATCC 13124] gi|168210129|ref|ZP_02635754.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens B str. ATCC 3626] gi|110675477|gb|ABG84464.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens ATCC 13124] gi|170711785|gb|EDT23967.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens B str. ATCC 3626] Length = 350 Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats. Identities = 108/343 (31%), Positives = 170/343 (49%), Gaps = 28/343 (8%) Query: 2 QIMSITDSNA--LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 Q + D + L +A E + G A PTETVYGL ++ + A+++++ K RP NP Sbjct: 6 QFIKDIDKDIKYLEEAAEIIKNGGIGAFPTETVYGLGANALDGEAVKKIFVAKGRPQDNP 65 Query: 60 LICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 LI H++D + K+ A + + L FWPGPLT++L + +++A L T R Sbjct: 66 LIIHIADKKDIDKYVAEIPKYAQELMDKFWPGPLTIIL--KKKDIVSDVTSAGLDTVGVR 123 Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 +P KLIE G P+A PSAN SG+ S T+++ + + II S+IG+E Sbjct: 124 MPNDEIALKLIELSGVPIAAPSANISGRPSPTDIERC-EEDLNGRVDFIIGAKKSEIGVE 182 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAP 232 STIV+ E + +LRPGG+ +E LK I + +D+ + P++PGM HYAP Sbjct: 183 STIVDATGEH-LCVLRPGGITLEMLKDIDEGVYIDKAILTTLDKDTKPKAPGMKYKHYAP 241 Query: 233 RSQVR------------LRAIHVNPREALIRFGNVPIKNI---ENAIISLNLSKTGKLKE 277 +++VR ++ I N + ++ G + N I +L L Sbjct: 242 KAKVRMVQGPINKMVEKIKEIVHNYIDEDLKVGIMATDETISMYNEGIVKSLGTREDLTS 301 Query: 278 AAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 NLF ++ DD G I + LG+AI NRL+++ Sbjct: 302 VTKNLFEMLRAFDDLGVDVIITEAFEEKDLGVAIMNRLKKSCG 344 >gi|257880059|ref|ZP_05659712.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 1,230,933] gi|257891150|ref|ZP_05670803.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 1,231,410] gi|257893964|ref|ZP_05673617.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 1,231,408] gi|260560328|ref|ZP_05832504.1| sua5/yciO/yrdC/ywlC family protein [Enterococcus faecium C68] gi|257814287|gb|EEV43045.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 1,230,933] gi|257827510|gb|EEV54136.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 1,231,410] gi|257830343|gb|EEV56950.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 1,231,408] gi|260073673|gb|EEW61999.1| sua5/yciO/yrdC/ywlC family protein [Enterococcus faecium C68] Length = 331 Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats. Identities = 108/327 (33%), Positives = 169/327 (51%), Gaps = 20/327 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E L G +A PTETVYGL ++ P A+++++ +K RP NPLI HV+ VK Sbjct: 1 MQEAAEALKEGELVAFPTETVYGLGANALLPNAVKKVFSVKGRPQDNPLIVHVASFEQVK 60 Query: 72 KHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 ++ P + + K FWPGPLTL+ + T + + T L TA FR+P T ++IE Sbjct: 61 EYVDNFHPAAEKIVKNFWPGPLTLIFKIKKDT-LPSVVTGGLSTAAFRIPDNKKTLEVIE 119 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK- 188 G PL PSAN SG+ S T H+ + +I IID G ++IG+EST++++ Sbjct: 120 LSGVPLVGPSANTSGKPSPTTADHVY-HDLQGKITGIIDDGATRIGVESTVLDLSDPTAM 178 Query: 189 VRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLRAI---- 241 ILRPG + E ++ I + ++ V E TP++PGM HY+P ++V + Sbjct: 179 PMILRPGAVTKEQIEAVIESPVAIDQHLVKENETPKAPGMKYKHYSPDTRVLMVRDGDWS 238 Query: 242 --HVNPREALIRFGNVPIKNIENAI----ISLNLSKTGKLKEAAFNLFNYMKIADD--SG 293 + IR G + I + + ++ + ++ AA LF ++ D+ G Sbjct: 239 TAVQWAKNKKIRAGVIASPEIADQVRTDTAAVYMYNDNSVEAAAKGLFAGLRGLDEPTLG 298 Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAA 320 I P GLG A NRL++AA Sbjct: 299 LDLIFVQVYPETGLGNAYMNRLKKAAG 325 >gi|182623990|ref|ZP_02951778.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens D str. JGS1721] gi|177910883|gb|EDT73237.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens D str. JGS1721] Length = 350 Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats. Identities = 107/343 (31%), Positives = 169/343 (49%), Gaps = 28/343 (8%) Query: 2 QIMSITDSNA--LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 Q + D + L +A E + G PTETVYGL ++ + A+++++ K RP NP Sbjct: 6 QFIKDIDKDIKYLEEAAEIIKNGGIGVFPTETVYGLGANALDGEAVKKIFVAKGRPQDNP 65 Query: 60 LICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 LI H++D + K+ A + + L FWPGPLT++L + +++A L T R Sbjct: 66 LIIHIADKKDIDKYVAEIPKYAQELMDKFWPGPLTIIL--KKKDIVSDVTSAGLDTVGVR 123 Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 +P KLIE G P+A PSAN SG+ S T+++ + + II S+IG+E Sbjct: 124 MPNDEIALKLIELSGVPIAAPSANISGRPSPTDIERC-EEDLNGRVDFIIGAKKSEIGVE 182 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAP 232 STIV+ E + +LRPGG+ +E LK I + +D+ + P++PGM HYAP Sbjct: 183 STIVDATGEH-LCVLRPGGITLEMLKDIDEGVYIDKAILTTLDKDTKPKAPGMKYKHYAP 241 Query: 233 RSQVR------------LRAIHVNPREALIRFGNVPIKNI---ENAIISLNLSKTGKLKE 277 +++VR ++ I N + ++ G + N I +L L Sbjct: 242 KAKVRMVQGPINKMVEKIKEIVHNYIDEDLKVGIMATDETISMYNEGIVKSLGTREDLTS 301 Query: 278 AAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 NLF ++ DD G I + LG+AI NRL+++ Sbjct: 302 VTKNLFEMLRAFDDLGVDVIITEAFEEKDLGVAIMNRLKKSCG 344 >gi|110802725|ref|YP_699474.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens SM101] gi|110683226|gb|ABG86596.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens SM101] Length = 350 Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats. Identities = 108/343 (31%), Positives = 170/343 (49%), Gaps = 28/343 (8%) Query: 2 QIMSITDSNA--LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 Q + D + L +A E + G A PTETVYGL ++ + A+++++ K RP NP Sbjct: 6 QFIKDIDKDIKYLEEAAEIIKNGGIGAFPTETVYGLGANALDGEAVKKIFVAKGRPQDNP 65 Query: 60 LICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 LI H++D + K+ A + + L FWPGPLT++L + +++A L T R Sbjct: 66 LIIHIADKKDIDKYVAEIPKYAQELMDKFWPGPLTIIL--KKKDIVSDVTSAGLDTVGVR 123 Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 +P KLIE G P+A PSAN SG+ S T+++ + + II S+IG+E Sbjct: 124 MPNDEIALKLIELSGVPIAAPSANISGRPSPTDIERC-EEDLNGRVDFIIGAKKSEIGVE 182 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAP 232 STIV+ E + +LRPGG+ +E LK I + +D+ + P++PGM HYAP Sbjct: 183 STIVDATGEH-LCVLRPGGITLEMLKDIDEGVYIDKAILTTLDKDTKPKAPGMKYKHYAP 241 Query: 233 RSQVR------------LRAIHVNPREALIRFGNVPIKNI---ENAIISLNLSKTGKLKE 277 +++VR ++ I N + ++ G + N I +L L Sbjct: 242 KAKVRMVQGPINKMVEKIKEIVHNYIDEDLKVGIMATDETISMYNEGIVKSLGTREDLTS 301 Query: 278 AAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 NLF ++ DD G I + LG+AI NRL+++ Sbjct: 302 ITRNLFETLRAFDDLGVDIIITEAFEEKDLGVAIMNRLKKSCG 344 >gi|291520269|emb|CBK75490.1| Sua5/YciO/YrdC/YwlC family protein [Butyrivibrio fibrisolvens 16/4] Length = 353 Score = 336 bits (863), Expect = 3e-90, Method: Composition-based stats. Identities = 108/353 (30%), Positives = 164/353 (46%), Gaps = 33/353 (9%) Query: 2 QIMSITDS----NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 +IM +++ +R+A E L G +A PTETVYGL D+ + A R++Y+ K RP+ Sbjct: 4 RIMDVSEEPINIEFIREASEILKNGGLVAFPTETVYGLGGDATDKEASRKIYQAKGRPSD 63 Query: 58 NPLICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 NPLI H++ +++ + P + LA FWPGPLT+V + I +T L T Sbjct: 64 NPLIVHIAKFEQLEQITTDLPETAKKLADAFWPGPLTMVCN--KNEVIPYETTGGLDTVA 121 Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R+P LIE G +A PSAN SG+ S T H+ + +I I+DGG IG Sbjct: 122 VRMPNNPVALALIEESGCMIAAPSANTSGRPSPTKASHVY-EDLSGKIEAILDGGPVDIG 180 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAIS--------VELEYCVDETSTPQSPGMLK 227 LESTIV++ E V ILRPG + ++ LK + V + + P++PGM Sbjct: 181 LESTIVDLT-EDIVTILRPGYINMDMLKEVVGEVRMDPGIVYNDKGTTSGAKPKAPGMRY 239 Query: 228 SHYAPRSQVRLRAIHVN------------PREALIRFGNVPIKNI---ENAIISLNLSKT 272 HYAP+ + + + N R + G + L + Sbjct: 240 KHYAPKGDLTIVSGEENKVVSTINKLTADKRAEGKKVGIIATSATAGRYEQGEVLIIGDR 299 Query: 273 GKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325 + A NL++ ++ D+ I S +G AI NRL +AA + Sbjct: 300 EDEQSIAHNLYDILRQFDELDVDIIYSESFATPKIGQAIMNRLLKAAGQKTIE 352 >gi|83591211|ref|YP_431220.1| translation factor SUA5 [Moorella thermoacetica ATCC 39073] gi|83574125|gb|ABC20677.1| translation factor SUA5 [Moorella thermoacetica ATCC 39073] Length = 352 Score = 336 bits (863), Expect = 3e-90, Method: Composition-based stats. Identities = 109/335 (32%), Positives = 164/335 (48%), Gaps = 28/335 (8%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +R A + L G +A PTETVYGL ++ + A+RR++ K RPA NPLI H++ V+ Sbjct: 18 IRLAAKILARGGVVAFPTETVYGLGANALDGRAVRRIFRAKGRPADNPLIVHIASFQDVQ 77 Query: 72 KH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 A + P + L + FWPGPLTL++ + I TA L T R+P + LI Sbjct: 78 DLVAYLPPRATLLMQRFWPGPLTLIMPR--SDLIPDEVTAGLDTVGLRMPSHPVAQALIR 135 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+A PSAN SG+ S T +H+L + +I +IDGG S +G+EST++++ Sbjct: 136 ATRLPIAAPSANTSGRPSPTTGQHVLRD-LRGKIDAVIDGGPSTVGVESTVLDLTSPVP- 193 Query: 190 RILRPGGLEIETLKRAIS-VELEYCVDET--STPQSPGMLKSHYAPRSQVRLRAIHVNPR 246 ILRPGG+ E L+ + V ++ V P++PGM HYAP +V L + Sbjct: 194 TILRPGGITYEELQAVLGKVAIDPAVKGQQVEHPKAPGMKYKHYAPAGEVFLVTGDLERV 253 Query: 247 EALIRFGNVPIKNIENAIISL-------------------NLSKTGKLKEAAFNLFNYMK 287 A +R + + L L + + A NLF ++ Sbjct: 254 VARVRALVAAWQRRGRRVAVLATSETAPFYQDEPRPDYLEVLGSRRQPETIAANLFGALR 313 Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 D A I ++ G+G+AI NRL ++AA R Sbjct: 314 NCDRHHADIILAETVKEEGIGLAIMNRLRKSAANR 348 >gi|238855955|ref|ZP_04646241.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus jensenii 269-3] gi|260664672|ref|ZP_05865524.1| Sua5 family translation factor [Lactobacillus jensenii SJ-7A-US] gi|282934362|ref|ZP_06339629.1| hypothetical protein HMPREF0886_0956 [Lactobacillus jensenii 208-1] gi|238831428|gb|EEQ23779.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus jensenii 269-3] gi|260561737|gb|EEX27709.1| Sua5 family translation factor [Lactobacillus jensenii SJ-7A-US] gi|281301572|gb|EFA93849.1| hypothetical protein HMPREF0886_0956 [Lactobacillus jensenii 208-1] Length = 333 Score = 336 bits (863), Expect = 3e-90, Method: Composition-based stats. Identities = 116/336 (34%), Positives = 173/336 (51%), Gaps = 21/336 (6%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 QI+ + + +A EFL G +A PTETVYGL + +++ +Y+ K RP+ NPLI Sbjct: 4 QILK---KDQIDQAVEFLKKGELVAFPTETVYGLGAIATKEESVKNVYKAKGRPSDNPLI 60 Query: 62 CHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 VSD +M+K++A P + L K FWPGPLTL+L L+ + T LKTA FR P Sbjct: 61 VTVSDENMMKRYAKFVPERAEKLIKHFWPGPLTLLL-LVKEGSLPDAVTGGLKTAAFRCP 119 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 T +LI G+P+ PSAN S + S T +H+ + +I IIDGG +++GLEST Sbjct: 120 NDELTHELISKLGYPIVGPSANTSTKPSPTTAEHVY-HDLKGKISAIIDGGATEVGLEST 178 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQV 236 I+++ E + +LRPG + E L + ++ V + + P++PGM HYAP + V Sbjct: 179 IIDLSVETPI-VLRPGQITPEELSEVLGEKVLINTGKVSDKAIPKAPGMKYRHYAPNAPV 237 Query: 237 RLR-------AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIA 289 + I A+ +V K A +L K LK+A NLF+ ++ Sbjct: 238 WVVDDTNDFGKIEFKSDTAVAALDSVLEKLDLPAENKFSLGK--DLKDADHNLFSALRFF 295 Query: 290 DDSG-ASSIAFSSIPNHGLGIAINNRLERAAAPRNQ 324 DD +I +A NRL +AAA + Sbjct: 296 DDEDEIKTIYVQGFDEGEKSLAYMNRLNKAAAGHHY 331 >gi|331086808|ref|ZP_08335885.1| hypothetical protein HMPREF0987_02188 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409974|gb|EGG89409.1| hypothetical protein HMPREF0987_02188 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 507 Score = 336 bits (863), Expect = 3e-90, Method: Composition-based stats. Identities = 96/336 (28%), Positives = 152/336 (45%), Gaps = 25/336 (7%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 D N + A L G +A PTETVYGL + A ++ Y K RP+ NPLI H+++ Sbjct: 13 IDENVIGMAGVILKEGGLVAFPTETVYGLGAHALKEEAAKKTYAAKGRPSDNPLIVHIAE 72 Query: 67 ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFT 124 +++ A ++ + LA FWPGPLT++ + + + +T L T R+P Sbjct: 73 YRALEEIAVNIPDKTALLANHFWPGPLTMIFE--KSALVPYGTTGGLDTVAVRMPADEVA 130 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + +I G ++ PSAN SG+ S T H+ + +I +IIDGG +IG+ESTI+++ Sbjct: 131 RAIILAGGGYVSAPSANTSGRPSPTTAMHV-KEDLDGKIDMIIDGGSVEIGVESTILDMT 189 Query: 185 CEKKVRILRPGGLEIETLKRAISVELE----YCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 + ILRPG + E L+ I E P++PGM HYAP++++ + Sbjct: 190 VTPPM-ILRPGAITKEMLEEVIGEVTEDQAIVSDKSKEAPKAPGMKYRHYAPKAKLMIIE 248 Query: 241 IHVNPREALIR---------------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNY 285 IR I N+ A NL+ Sbjct: 249 GETKEAVKAIRQVAFEQERLGYKVGIIATDETAEKYKRGIVKNIGTRENEYTIAQNLYRV 308 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 ++ D+ I + G+G A+ NRL++AA Sbjct: 309 LREFDEEDVDYIYSEAFAMDGIGSAVMNRLKKAAGH 344 >gi|153853663|ref|ZP_01995043.1| hypothetical protein DORLON_01034 [Dorea longicatena DSM 13814] gi|149753818|gb|EDM63749.1| hypothetical protein DORLON_01034 [Dorea longicatena DSM 13814] Length = 353 Score = 336 bits (863), Expect = 3e-90, Method: Composition-based stats. Identities = 103/351 (29%), Positives = 170/351 (48%), Gaps = 34/351 (9%) Query: 1 MQIMSIT---------DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEI 51 M+IM +++ +R+A L G +A PTETVYGL D+ N A +++Y Sbjct: 1 MKIMKTIIEKIDKNQKNTDIIREAGRILKEGGLVAFPTETVYGLGADALNEDAAKKIYAA 60 Query: 52 KKRPAMNPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA 110 K RP+ NPLI H++++ + K V ++ +A+ +WPGPLT++ + + + +T Sbjct: 61 KGRPSDNPLIIHITNMKALDKIVSEVPEKAVKVAEKYWPGPLTMIFN--KSDIVPYGTTG 118 Query: 111 NLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169 L T R+P +++I+ G +A PSAN SG+ S T +H+ + + + +I+DG Sbjct: 119 GLDTVAVRMPVDEIAREVIDAGGGYIAAPSANTSGRPSPTTAQHV-AEDLTGRVDMIVDG 177 Query: 170 GISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCV---DETSTPQSPGM 225 G +IG+ESTI++V E + ILRPG + E + I V ++ + D P++PGM Sbjct: 178 GAVEIGVESTILDVTVEPPM-ILRPGAITKEMFEEVIGEVTVDRTLIRPDSKQVPKAPGM 236 Query: 226 LKSHYAPRSQV------------RLRAIHVNPREALIRFGNVPIKNI---ENAIISLNLS 270 HYAP++ + + EA + G + + + + Sbjct: 237 KYRHYAPKADLTIIEGPLEKVVKEINKRAKEKSEAGYKVGVIGTEETVADYKSGDVKCIG 296 Query: 271 KTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 A NLF ++ DD I S G+G AI NRL +AA Sbjct: 297 TRADESTIAANLFRILREFDDDQVDYIYSESFDTAGIGSAIMNRLLKAAGH 347 >gi|315649887|ref|ZP_07902969.1| Sua5/YciO/YrdC/YwlC family protein [Paenibacillus vortex V453] gi|315274686|gb|EFU38068.1| Sua5/YciO/YrdC/YwlC family protein [Paenibacillus vortex V453] Length = 385 Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats. Identities = 111/343 (32%), Positives = 167/343 (48%), Gaps = 27/343 (7%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 + + L++A L G +A PTETVYGL D+ N A+ R++ K RPA NPLI H Sbjct: 39 LKMAAEPELQEAGLVLAQGGTVAFPTETVYGLGADAGNTEAVERIFAAKGRPADNPLIVH 98 Query: 64 VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 +S+++ ++ V+ L FWPGPL+LVL + + P TA L T R+P Sbjct: 99 ISELAQLEGLVQHVNETERALMDSFWPGPLSLVLPVKRDA-VSPRVTAGLDTVAVRMPDH 157 Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 LI G PLA PSANRSG+ S T H+L + + I ++DGG + +G+EST+V Sbjct: 158 SVALALISAAGRPLAAPSANRSGRPSPTLASHVL-ADLAGYIDGVLDGGPAGVGVESTVV 216 Query: 182 NVQCEKKVRILRPGGLEIETLKRA-----ISVELEYCVDETS--TPQSPGMLKSHYAPRS 234 V + V +LRPGG+ E L + L+ E P+SPGM +HYAP+ Sbjct: 217 QVGEDGAVTVLRPGGVTAEQLAAVAASVRLDPALQRAAGEAEGPAPRSPGMKYTHYAPKG 276 Query: 235 QVRLRAIHVNPREALIRFGNVPIK----------------NIENAIISLNLSKTGKLKEA 278 + + + + A ++++L +EA Sbjct: 277 AMCVVQGPRADAVSARIAAELEAAARRGEVTGVLSFDEHIGHYRADVAVSLGSLAAPEEA 336 Query: 279 AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 A L+ ++ DD GA+ I + P+ G+G A+ NRL +AA Sbjct: 337 ARRLYAGLRHFDDEGATFILAEACPDRGVGAAVMNRLLKAAGH 379 >gi|184154905|ref|YP_001843245.1| hypothetical protein LAF_0429 [Lactobacillus fermentum IFO 3956] gi|183226249|dbj|BAG26765.1| conserved hypothetical protein [Lactobacillus fermentum IFO 3956] Length = 343 Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats. Identities = 104/332 (31%), Positives = 162/332 (48%), Gaps = 19/332 (5%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I +++A + + AG +A PTETVYGL D+ N A++++Y K RP+ NPLI HVS Sbjct: 6 IFQPAEVKQAAKLIQAGQLVAFPTETVYGLGADATNEEAVKQVYLAKGRPSDNPLIVHVS 65 Query: 66 DISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123 ++MV+ A + + L FWPG LT++L + T + T L T FR P C Sbjct: 66 SLAMVEHFAAEIPAKAKQLMDRFWPGSLTIILRVKPGT-LSKTVTGGLDTVAFRFPDCQP 124 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 T LI G P+ PSAN SG+ S T H+ + +I IID G +++G+EST++++ Sbjct: 125 TLDLISQAGVPIVGPSANTSGKPSPTTANHVY-HDLNNKIAGIIDNGPTRVGVESTVLDM 183 Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241 + V ILRPG + + ++ I + V + P++PGM HYAP +QV + Sbjct: 184 STSQPV-ILRPGAVTKQDIEGVIGSIDINHHQVKQDEVPKAPGMKYKHYAPNAQVYIVDP 242 Query: 242 HVNPREALIRFG----NVPIKNIENAIISLNLSKTGK-------LKEAAFNLFNYMKIAD 290 + E V + + + + S ++EA+ +LF ++ D Sbjct: 243 ADDWGEVAAVIAQSKEQVGLMATDQVLHAHVWSVQADQFSLGTGVQEASAHLFEGLRDFD 302 Query: 291 -DSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 I GLG A NRL ++A Sbjct: 303 NQEEIHQIFCQGFEPTGLGAAYMNRLNKSAGG 334 >gi|168205563|ref|ZP_02631568.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens E str. JGS1987] gi|169344175|ref|ZP_02865157.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens C str. JGS1495] gi|169297633|gb|EDS79733.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens C str. JGS1495] gi|170662901|gb|EDT15584.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens E str. JGS1987] Length = 350 Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats. Identities = 107/343 (31%), Positives = 170/343 (49%), Gaps = 28/343 (8%) Query: 2 QIMSITDSNA--LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 Q + D + L +A E + G A PTETVYGL ++ + A+++++ K RP NP Sbjct: 6 QFIKDIDKDIKYLEEAAEIIKNGGIGAFPTETVYGLGANALDGEAVKKIFVAKGRPQDNP 65 Query: 60 LICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 LI H++D + K+ A + + L FWPGPLT++L + +++A L T R Sbjct: 66 LIIHIADKKDIDKYVAEIPKYAQELMDKFWPGPLTIIL--KKKDIVSDVTSAGLDTVGVR 123 Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 +P KLIE G P+A PSAN SG+ S T+++ + + II S+IG+E Sbjct: 124 MPNDEIALKLIELSGVPIAAPSANISGRPSPTDIERC-EEDLNGRVDFIIGAKKSEIGVE 182 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAP 232 STIV+ E + +LRPGG+ +E LK I + +D+ + P++PGM HYAP Sbjct: 183 STIVDATGEH-LCVLRPGGITLEMLKDIDEGVYIDKAILTTLDKDTKPKAPGMKYKHYAP 241 Query: 233 RSQVR------------LRAIHVNPREALIRFGNVPIKNI---ENAIISLNLSKTGKLKE 277 +++VR ++ I N + ++ G + + I +L L Sbjct: 242 KAKVRMVQGPINKMVEKIKEIVHNYIDEDLKVGIMATDETISMYDEGIVKSLGTREDLTS 301 Query: 278 AAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 NLF ++ DD G I + LG+AI NRL+++ Sbjct: 302 VTKNLFEMLRAFDDLGVDVIITEAFEEKDLGVAIMNRLKKSCG 344 >gi|15643615|ref|NP_228661.1| hypothetical protein TM0852 [Thermotoga maritima MSB8] gi|4981386|gb|AAD35934.1|AE001752_1 conserved hypothetical protein [Thermotoga maritima MSB8] Length = 335 Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats. Identities = 113/321 (35%), Positives = 167/321 (52%), Gaps = 12/321 (3%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L++A E L G I PTETVYG+ D+ N A ++++++K+RPA NPLI H+ Sbjct: 13 DEKVLKEAAELLRNGEVIIFPTETVYGIGADAYNEEACKKIFKLKERPADNPLIVHIHSF 72 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 +++ A L K FWPGPLT++ + I P+ TA+L T R+P K Sbjct: 73 KQLEEIAEGYEPHLDFLKKFWPGPLTVIF-RKKSEKIPPVVTADLPTVAVRMPAHPVALK 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LIE +GHP+A PSAN SG+ S TNVKH++ + K + LIID G + GLESTIV++ E Sbjct: 132 LIELFGHPIAAPSANISGRPSATNVKHVIEDFMGK-VKLIIDAGDTPFGLESTIVDLTKE 190 Query: 187 KKVRILRPGGLEIETLK----RAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242 K V +LRPG +E+E LK + + + P +PGM HYAP + L Sbjct: 191 KPV-LLRPGPVEVERLKELFPELVVPDFVRKGNFKGRPLAPGMKYRHYAPLKPLILVEDL 249 Query: 243 VNPREALIRFGNVPIKNIEN----AIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIA 298 E L ++ + + +E + + A N+F+ ++ A+ G I Sbjct: 250 TKMEEVLKKYPDHVVICVEERKELYDDRIVVGSLKNPYSIAQNIFSALREAEKMGKEYII 309 Query: 299 FSSIPNHGLGIAINNRLERAA 319 G+ A+ NRL +AA Sbjct: 310 VEGFEERGILFAVMNRLRKAA 330 >gi|227514469|ref|ZP_03944518.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus fermentum ATCC 14931] gi|227087155|gb|EEI22467.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus fermentum ATCC 14931] Length = 343 Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats. Identities = 104/332 (31%), Positives = 162/332 (48%), Gaps = 19/332 (5%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I +++A + + AG +A PTETVYGL D+ N A++++Y K RP+ NPLI HVS Sbjct: 6 IFQPAEVKQAAKLIQAGQLVAFPTETVYGLGADATNEEAVKQVYLAKGRPSDNPLIVHVS 65 Query: 66 DISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123 ++MV+ A + + L FWPG LT++L + T + T L T FR P C Sbjct: 66 SLAMVEHFAAEIPAKAKQLMDRFWPGSLTIILRVKPGT-LSKTVTGGLDTVAFRFPDCQP 124 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 T LI G P+ PSAN SG+ S T H+ + +I IID G +++G+EST++++ Sbjct: 125 TLDLISQVGVPIVGPSANTSGKPSPTTANHVY-HDLNNKIAGIIDNGPTRVGVESTVLDM 183 Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241 + V ILRPG + + ++ I + V + P++PGM HYAP +QV + Sbjct: 184 STSQPV-ILRPGAVTKQDIEGVIGSIDINHHQVKQDEVPKAPGMKYKHYAPNAQVYIVDP 242 Query: 242 HVNPREALIRFG----NVPIKNIENAIISLNLSKTGK-------LKEAAFNLFNYMKIAD 290 + E V + + + + S ++EA+ +LF ++ D Sbjct: 243 ADDWGEVAAVIAQSKEQVGLMATDQVLHAHVWSVQADQFSLGTGVQEASAHLFEGLRDFD 302 Query: 291 -DSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 I GLG A NRL ++A Sbjct: 303 NQEEIHQIFCQGFEPTGLGAAYMNRLNKSAGG 334 >gi|268319747|ref|YP_003293403.1| hypothetical protein FI9785_1276 [Lactobacillus johnsonii FI9785] gi|262398122|emb|CAX67136.1| conserved hypothetical protein [Lactobacillus johnsonii FI9785] Length = 330 Score = 335 bits (861), Expect = 4e-90, Method: Composition-based stats. Identities = 112/330 (33%), Positives = 160/330 (48%), Gaps = 13/330 (3%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ I + + +A L G +A PTETVYGL + N A++ +Y K RP+ NPL Sbjct: 1 MET-KIFNKEQISEAVALLRKGELVAFPTETVYGLGALATNEKAVKSVYAAKGRPSDNPL 59 Query: 61 ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I VSD M++K+ V + L K FWPGPLT++L + T + T L TA FR Sbjct: 60 IVTVSDEEMMEKYVNEVPERAKKLIKHFWPGPLTIILFVKEGT-LPDAVTGGLPTAAFRC 118 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T LI G P+ PSAN S + S T +H+ + +I IID G ++IGLES Sbjct: 119 PNDEMTHDLISELGKPIVGPSANTSTKPSPTTAEHVF-HDLKGKIAGIIDNGPTEIGLES 177 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQ 235 TIV++ EK +LRPG + E + + E+ P++PGM HYAP + Sbjct: 178 TIVDLSVEKP-TVLRPGEITPEEISAVLGEEVLMNRGTTQTKGVPKAPGMKYRHYAPSAP 236 Query: 236 VRLRAIHVN--PREALIRFGNVPIKNIENAIISLNLSKTGK-LKEAAFNLFNYMKIADDS 292 V + + + G + + I S N GK + +AA NLF ++ DD Sbjct: 237 VLIVDKEEDFSKIQWDDETGVAALDEVLEKIDSPNKYSLGKTIDKAAHNLFGALRYFDDE 296 Query: 293 G-ASSIAFSSIPNHGLGIAINNRLERAAAP 321 I + + A NRL +AAA Sbjct: 297 NKIKRIYVQGFDHGAISAAYMNRLNKAAAG 326 >gi|325663226|ref|ZP_08151676.1| hypothetical protein HMPREF0490_02417 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470680|gb|EGC73910.1| hypothetical protein HMPREF0490_02417 [Lachnospiraceae bacterium 4_1_37FAA] Length = 509 Score = 335 bits (861), Expect = 4e-90, Method: Composition-based stats. Identities = 95/336 (28%), Positives = 152/336 (45%), Gaps = 25/336 (7%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 D + + A L G +A PTETVYGL + A ++ Y K RP+ NPLI H+++ Sbjct: 15 IDEDVIGMAGVILKEGGLVAFPTETVYGLGAHALKEEAAKKTYAAKGRPSDNPLIVHIAE 74 Query: 67 ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFT 124 +++ A ++ + LA FWPGPLT++ + + + +T L T R+P Sbjct: 75 YRALEEIAVNIPDKTALLANHFWPGPLTMIFE--KSALVPYGTTGGLDTVAVRMPADEVA 132 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + +I G ++ PSAN SG+ S T H+ + +I +IIDGG +IG+ESTI+++ Sbjct: 133 RAIILAGGGYVSAPSANTSGRPSPTTAMHV-KEDLDGKIDMIIDGGSVEIGVESTILDMT 191 Query: 185 CEKKVRILRPGGLEIETLKRAISVELE----YCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 + ILRPG + E L+ I E P++PGM HYAP++++ + Sbjct: 192 VTPPM-ILRPGAITKEMLEEVIGEVTEDQAIVSDKSKEAPKAPGMKYRHYAPKAKLMIIE 250 Query: 241 IHVNPREALIR---------------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNY 285 IR I N+ A NL+ Sbjct: 251 GDTKEAVKAIRQVAFEQERLGYKVGIIATDETAEKYKRGIVKNIGTRENEYTIAQNLYRV 310 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 ++ D+ I + G+G A+ NRL++AA Sbjct: 311 LREFDEEDVDYIYSEAFAMDGIGSAVMNRLKKAAGH 346 >gi|168215829|ref|ZP_02641454.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens NCTC 8239] gi|182382042|gb|EDT79521.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens NCTC 8239] Length = 350 Score = 335 bits (861), Expect = 4e-90, Method: Composition-based stats. Identities = 107/343 (31%), Positives = 170/343 (49%), Gaps = 28/343 (8%) Query: 2 QIMSITDSNA--LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 Q + D + L +A E + G A PTETVYGL ++ + A+++++ K RP NP Sbjct: 6 QFIKDIDKDIKYLEEAAEIIKNGGIGAFPTETVYGLGANALDGEAVKKIFVAKGRPQDNP 65 Query: 60 LICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 LI H++D + K+ A + + L FWPGPLT++L + +++A L T R Sbjct: 66 LIIHIADKKDIDKYVAEIPKYAQELMDKFWPGPLTIIL--RKKDIVSDVTSAGLDTVGVR 123 Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 +P KLIE G P+A PSAN SG+ S T+++ + + II S+IG+E Sbjct: 124 MPNDEIALKLIELSGVPIAAPSANISGRPSPTDIERC-EEDLNGRVDFIIGAKKSEIGVE 182 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAP 232 STIV+ E + +LRPGG+ +E LK I + +D+ + P++PGM HYAP Sbjct: 183 STIVDATGEH-LCVLRPGGITLEMLKDIDEGVYIDKAILTTLDKDTKPKAPGMKYKHYAP 241 Query: 233 RSQVR------------LRAIHVNPREALIRFGNVPIKNI---ENAIISLNLSKTGKLKE 277 +++VR ++ I N + ++ G + + I +L L Sbjct: 242 KAKVRMVQGPINKMVEKIKEIVHNYIDEDLKVGIMATDETISMYDEGIVKSLGTREDLTS 301 Query: 278 AAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 NLF ++ DD G I + LG+AI NRL+++ Sbjct: 302 VTKNLFEMLRAFDDLGVDVIITEAFEEKDLGVAIMNRLKKSCG 344 >gi|18311182|ref|NP_563116.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens str. 13] gi|18145865|dbj|BAB81906.1| conserved hypothetical protein [Clostridium perfringens str. 13] Length = 350 Score = 335 bits (861), Expect = 4e-90, Method: Composition-based stats. Identities = 107/343 (31%), Positives = 170/343 (49%), Gaps = 28/343 (8%) Query: 2 QIMSITDSNA--LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 Q + D + L +A E + G A PTETVYGL ++ + A+++++ K RP NP Sbjct: 6 QFIKDIDKDIKYLEEAAEIIKNGGIGAFPTETVYGLGANALDGEAVKKIFVAKGRPQDNP 65 Query: 60 LICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 LI H++D + K+ A + + L FWPGPLT++L + +++A L T R Sbjct: 66 LIIHIADKKDIDKYVAEIPKYAQELMDKFWPGPLTIIL--KKKDIVSDVTSAGLDTVGVR 123 Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 +P KLIE G P+A PSAN SG+ S T+++ + + II S+IG+E Sbjct: 124 MPNDEIALKLIELSGVPIAAPSANISGRPSPTDIERC-EEDLNGRVDFIIGAKKSEIGVE 182 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAP 232 STIV+ E + +LRPGG+ +E LK I + +D+ + P++PGM HYAP Sbjct: 183 STIVDATGEH-LCVLRPGGITLEMLKDIDEGVDIDKAILTTLDKDTKPKAPGMKYKHYAP 241 Query: 233 RSQVR------------LRAIHVNPREALIRFGNVPIKNI---ENAIISLNLSKTGKLKE 277 +++VR ++ I N + ++ G + + I +L L Sbjct: 242 KAKVRMVQGPINKMVEKIKEIVHNYIDEDLKVGIMATDETISMYDEGIVKSLGTREDLTS 301 Query: 278 AAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 NLF ++ DD G I + LG+AI NRL+++ Sbjct: 302 VTKNLFEMLRAFDDLGVDVIITEAFEEKDLGVAIMNRLKKSCG 344 >gi|83941398|ref|ZP_00953860.1| Sua5/YciO/YrdC family protein [Sulfitobacter sp. EE-36] gi|83847218|gb|EAP85093.1| Sua5/YciO/YrdC family protein [Sulfitobacter sp. EE-36] Length = 314 Score = 335 bits (861), Expect = 4e-90, Method: Composition-based stats. Identities = 126/323 (39%), Positives = 178/323 (55%), Gaps = 10/323 (3%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M + D + + +A L G +A+PTETVYGL D+RN TA+ +YE K RP+ NPL Sbjct: 1 MTEILPADPSGISRAATLLQQGALVALPTETVYGLGADARNGTAVAGIYEAKGRPSFNPL 60 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 I HV+D+ +++ + LA FWPGP+TLVL L + L TA L + RVP Sbjct: 61 IIHVADVDQARRYGRWSDTAEILASAFWPGPMTLVLPLADGHGLSSLVTAGLDSVGIRVP 120 Query: 121 CGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + ++ G P+A PSAN SG+IS T +H+LS + I ++D G +GLEST Sbjct: 121 AHPTARAILRALGGPVAAPSANPSGKISATTAQHVLS-GLGGRIAAVVDDGPCTVGLEST 179 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 I+ + + + +LR GGL E ++ A+ L+ + + +PG L SHYAP + VRL Sbjct: 180 IIGL-NQPRPTLLRAGGLPSEAIEAALGAPLDVA--DGAEIIAPGQLASHYAPHASVRLN 236 Query: 240 AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF 299 A E + FG ++ L LS +G L EAA +LF+ + D IA Sbjct: 237 AQAATGGEVYLGFGAASGSGPDD----LTLSASGDLVEAAAHLFDRLHALDRLR-KPIAV 291 Query: 300 SSIPNHGLGIAINNRLERAAAPR 322 + IP GLG AIN+RL RAAAPR Sbjct: 292 APIPETGLGRAINDRLRRAAAPR 314 >gi|261409693|ref|YP_003245934.1| Sua5/YciO/YrdC/YwlC family protein [Paenibacillus sp. Y412MC10] gi|261286156|gb|ACX68127.1| Sua5/YciO/YrdC/YwlC family protein [Paenibacillus sp. Y412MC10] Length = 365 Score = 335 bits (861), Expect = 5e-90, Method: Composition-based stats. Identities = 111/338 (32%), Positives = 164/338 (48%), Gaps = 27/338 (7%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 AL +A + L G +A PTETVYGL D+ N A+ R++ K RP+ NPLI H+S+++ Sbjct: 20 KQALHEAGQVLAQGGTVAFPTETVYGLGADAGNTEAVERIFAAKGRPSDNPLIVHISELA 79 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + V+ L FWPGPL+LVL + + P TA L T R+P Sbjct: 80 QLDGLVQQVNETERALMASFWPGPLSLVLPVKPGA-VSPRVTAGLDTVAVRMPDHRVALA 138 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LI G PLA PSANRSG+ S T H+L + I ++DGG + +G+EST+V V + Sbjct: 139 LISAAGCPLAAPSANRSGRPSPTLASHVL-EDLAGAIDGVLDGGPAGVGVESTVVQVGED 197 Query: 187 KKVRILRPGGLEIETLKRAIS-----VELEYCVDETS--TPQSPGMLKSHYAPRSQVRLR 239 V +LRPGG+ E L + L+ E P+SPGM +HYAP+ + + Sbjct: 198 GAVTVLRPGGVTAEQLAAVAASVRQDPALQRAAGEAESPAPRSPGMKYTHYAPKGAMCVV 257 Query: 240 AIHVNPREALIRFGNVPIK----------------NIENAIISLNLSKTGKLKEAAFNLF 283 + + A ++++L +EAA L+ Sbjct: 258 QGPRADTVSARIAAELEAAARRGEVTGVLSFDEHIGHYAADVAVSLGSLAAPEEAARRLY 317 Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 ++ D+ GA+ I + P+ GLG A+ NRL +AA Sbjct: 318 AGLRRFDEEGATFILAEACPDQGLGAAVMNRLLKAAGH 355 >gi|168213696|ref|ZP_02639321.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens CPE str. F4969] gi|170714770|gb|EDT26952.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens CPE str. F4969] Length = 350 Score = 335 bits (861), Expect = 5e-90, Method: Composition-based stats. Identities = 107/343 (31%), Positives = 170/343 (49%), Gaps = 28/343 (8%) Query: 2 QIMSITDSNA--LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 Q + D + L +A E + G A PTETVYGL ++ + A+++++ K RP NP Sbjct: 6 QFIKDIDKDIKYLEEAAEIIKKGGIGAFPTETVYGLGANALDGEAVKKIFVAKGRPQDNP 65 Query: 60 LICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 LI H++D + K+ A + + L FWPGPLT++L + +++A L T R Sbjct: 66 LIIHIADKKDIDKYVAEIPKYAQELMDKFWPGPLTIIL--KKKDIVSDVTSAGLDTVGVR 123 Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 +P KLIE G P+A PSAN SG+ S T+++ + + II S+IG+E Sbjct: 124 MPNDEIALKLIELSGVPIAAPSANISGRPSPTDIERC-EEDLNGRVDFIIGAKKSEIGVE 182 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAP 232 STIV+ E + +LRPGG+ +E LK I + +D+ + P++PGM HYAP Sbjct: 183 STIVDATGEH-LCVLRPGGITLEMLKDIDEGVYIDKAILTTLDKDTKPKAPGMKYKHYAP 241 Query: 233 RSQVR------------LRAIHVNPREALIRFGNVPIKNI---ENAIISLNLSKTGKLKE 277 +++VR ++ I N + ++ G + + I +L L Sbjct: 242 KAKVRMVQGPINKMVEKIKEIVHNYIDEDLKVGIMATDETISMYDEGIVKSLGTREDLTS 301 Query: 278 AAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 NLF ++ DD G I + LG+AI NRL+++ Sbjct: 302 VTKNLFEMLRAFDDLGVDVIITEAFEEKDLGVAIMNRLKKSCG 344 >gi|89070201|ref|ZP_01157529.1| Sua5/YciO/YrdC family protein [Oceanicola granulosus HTCC2516] gi|89044217|gb|EAR50368.1| Sua5/YciO/YrdC family protein [Oceanicola granulosus HTCC2516] Length = 317 Score = 335 bits (860), Expect = 5e-90, Method: Composition-based stats. Identities = 131/325 (40%), Positives = 172/325 (52%), Gaps = 13/325 (4%) Query: 1 MQIMSITDSNALRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 M + D L +A L G +A PTETVYGL + + A+ R++E K RPA NP Sbjct: 1 MTLRLALDDAGLAEAARLLRTEGGIVAFPTETVYGLGARACDDRAVARVFEAKGRPAFNP 60 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 LI H D++ V+ ++ P + LA FWPGPLTLVL L + PL T T R+ Sbjct: 61 LIVHCPDLATVETLCTLPPGAGRLAATFWPGPLTLVLPLRPDAPVSPLVTDGRDTLAVRL 120 Query: 120 PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 P + + PLA PSAN SG+IS T+ H+L + + I ++D G +GLEST Sbjct: 121 PDHPAARALLARTGPLAGPSANPSGRISPTSADHVL-AGLDGRIDAVLDAGPCPVGLEST 179 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 IV + E + LR GGL E L+ + L +PG L SHYAPR +RL Sbjct: 180 IVALLPEPTL--LRAGGLPTEALEACLGAPL--AAHGGGEITAPGQLASHYAPRGTLRLD 235 Query: 240 AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF 299 A P E + FG +LNLS +G L EAA LF + D +GA IA Sbjct: 236 ADAPAPGETYLGFGPASPG-------ALNLSPSGDLVEAAARLFAALHALDAAGARRIAV 288 Query: 300 SSIPNHGLGIAINNRLERAAAPRNQ 324 + IP HGLG AIN+RL RAAAPR++ Sbjct: 289 APIPAHGLGRAINDRLRRAAAPRDE 313 >gi|163741878|ref|ZP_02149268.1| Sua5/YciO/YrdC family protein [Phaeobacter gallaeciensis 2.10] gi|161385051|gb|EDQ09430.1| Sua5/YciO/YrdC family protein [Phaeobacter gallaeciensis 2.10] Length = 315 Score = 335 bits (860), Expect = 6e-90, Method: Composition-based stats. Identities = 125/315 (39%), Positives = 170/315 (53%), Gaps = 13/315 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + A + L G +A PTETVYGL D+R A+ LY K RP+ NPLI HV + Sbjct: 13 PQEISTAADLLKEGQLVAFPTETVYGLGADARQTNAVEALYAAKGRPSFNPLIAHVHSVE 72 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127 ++H ++ LA+ FWPGPLTLVL L I PL TA L T R+P + L Sbjct: 73 TAQRHVIWSDIADTLAEAFWPGPLTLVLPLREDHGISPLVTAGLNTLGIRIPAHPAARAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + P+A PSAN SG+IS T H++ + + I ++D G +G+ESTI+ + Sbjct: 133 LSVLDGPVAAPSANPSGRISPTTAAHVI-AGLGGRIAAVVDDGPCGVGVESTIIGLATGT 191 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 + +LRPGGL E ++ + L + D + +PG L SHYAPR+ VRL E Sbjct: 192 PL-LLRPGGLATEEIEAVLGHTL-HLRDASDPLTAPGQLLSHYAPRASVRLNVTTPQDGE 249 Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307 + FG + LNLS +G L+EAA LF ++ D A IA + IP GL Sbjct: 250 LYLGFGAMECD--------LNLSASGDLREAAAQLFGHLHRLDAR-AQPIAVAPIPEAGL 300 Query: 308 GIAINNRLERAAAPR 322 G+AIN+RL RAAAPR Sbjct: 301 GVAINDRLRRAAAPR 315 >gi|297585438|ref|YP_003701218.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus selenitireducens MLS10] gi|297143895|gb|ADI00653.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus selenitireducens MLS10] Length = 352 Score = 335 bits (860), Expect = 6e-90, Method: Composition-based stats. Identities = 109/329 (33%), Positives = 158/329 (48%), Gaps = 19/329 (5%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 A+ +A E + G +A PTETVYGL D+ + AIRR++E K RPA NPLI HV+ I Sbjct: 24 DRAIAEAAELIRNGEVVAFPTETVYGLGGDATSDEAIRRIFEAKGRPADNPLIVHVASIE 83 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + ++ + L FWPGPLT+VL T + TA L T R+P + Sbjct: 84 DAARWTLTLPKTAKDLMAAFWPGPLTIVLPHNGT--LSGAVTAGLPTVGLRMPDHPVALR 141 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LIE G PLA PS NRSG+ S T H+ + IP+I+DGG + +GLEST+V V + Sbjct: 142 LIEASGRPLAAPSGNRSGRPSPTEAAHV-EEDLNGRIPMILDGGPAGVGLESTVVEVT-D 199 Query: 187 KKVRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244 +V +LRPGG+ +E L+ + P+SPGM +HYAP + L + Sbjct: 200 GQVTVLRPGGVTLEALREVAEHVAIDPSLLKSDEAPRSPGMKYTHYAPDVPLYLVEGELA 259 Query: 245 PREALIRFGNV-----------PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293 + IR + A +++ L L+ ++ Sbjct: 260 ALKQAIRKAKEDGLLTGAIIVNEWAGLTGAHQEVSVGSETDLAAVGRELYRALRQFKTGE 319 Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAAPR 322 + + P LG AI NRLE+A+ + Sbjct: 320 VDMLLVCTFPETELGGAIMNRLEKASGGK 348 >gi|114771324|ref|ZP_01448744.1| Sua5/YciO/YrdC family protein [alpha proteobacterium HTCC2255] gi|114548249|gb|EAU51136.1| Sua5/YciO/YrdC family protein [alpha proteobacterium HTCC2255] Length = 318 Score = 335 bits (860), Expect = 6e-90, Method: Composition-based stats. Identities = 131/322 (40%), Positives = 187/322 (58%), Gaps = 16/322 (4%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 +S+ A E L +G +A PTETVYGL ++ N A+ +Y KKRP NPLI HV + Sbjct: 8 INSDGYAYASEILKSGGLVAFPTETVYGLGANALNSDAVAEIYTAKKRPNFNPLIVHVLN 67 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + +K A + +L LA FWPGPLT+V + + T++ L TA L T RVP + Sbjct: 68 LETAQKFAVFNKDTLLLANKFWPGPLTVVAPIKNKTNLSRLITAGLDTVAIRVPAHPVAR 127 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 KL+ET+ P+A PSAN SG IS T+ H+ S + I I++GG +GLESTI+ + Sbjct: 128 KLLETFNGPIAAPSANPSGSISSTSAAHV-KSGLGGRIQAILNGGKCDVGLESTII-LSN 185 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245 + ILR GG+ + ++ + ++ + T SPG L SHYAP + +R+ AI + Sbjct: 186 NGQCNILRSGGISEKEIEEVLGYKISLN-QNSDTLISPGQLSSHYAPNANLRMNAIKADE 244 Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD----SGASSIAFSS 301 E +I FG+V + LNLS G L EAA NLF Y+ +AD+ G + IA + Sbjct: 245 DEYMIGFGDV--------VGQLNLSSQGNLIEAATNLFAYLHMADEDAITLGKTKIAIAK 296 Query: 302 IPNHGLGIAINNRLERAAAPRN 323 IP HGLG+AIN+RL RA+ P++ Sbjct: 297 IPMHGLGVAINDRLTRASTPKS 318 >gi|296134388|ref|YP_003641635.1| Sua5/YciO/YrdC/YwlC family protein [Thermincola sp. JR] gi|296032966|gb|ADG83734.1| Sua5/YciO/YrdC/YwlC family protein [Thermincola potens JR] Length = 361 Score = 335 bits (860), Expect = 6e-90, Method: Composition-based stats. Identities = 104/337 (30%), Positives = 172/337 (51%), Gaps = 28/337 (8%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + +A E + G +A PTETVYGL ++ + A+++++ K RP+ NPLI H+++ Sbjct: 15 DPETISQAAEIIKRGGVVAFPTETVYGLGANALDGPAVQKIFAAKGRPSDNPLIVHIAEF 74 Query: 68 SMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125 S ++ + PL + ++FWPGPLT+++ DI T LKT R+P Sbjct: 75 SQLEMLVTEVPLTARRAMEVFWPGPLTIIMPCRD--DIPRTVTGGLKTVGVRMPKHPVAL 132 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LI+ P+A PSAN SG+ S T +H++ + +I +IDGG +++G+EST++++ Sbjct: 133 ALIKAAKLPIAAPSANSSGKPSPTEARHVMYD-LAGKIDAVIDGGPAQVGVESTVLDMTG 191 Query: 186 EKKVRILRPGGLEIETLKRAIS-VELEYCVDET---STPQSPGMLKSHYAPRSQVRLRAI 241 + V ILRPGG+ E L+ + V+L+ + P++PGM HY+P +++ L Sbjct: 192 DTPV-ILRPGGVTREQLEAILGHVDLDLPSVDKIIHQAPKAPGMKYRHYSPEAKLILVKP 250 Query: 242 HVNPREALI-----------RFGNVPIKNIENA-------IISLNLSKTGKLKEAAFNLF 283 A I + ++E A ++ L G L+E A NLF Sbjct: 251 VPGKAVADIIQALADRYQSKGMKVALMVSVETASILPLEDVLCGILGHRGHLEEIAGNLF 310 Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ D I G+G+AI NRL +AA+ Sbjct: 311 KVLREVDAQKPDVIIAEGFAEAGIGMAIMNRLTKAAS 347 >gi|294084260|ref|YP_003551018.1| Sua5/YciO/YrdC/YwlC family protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292663833|gb|ADE38934.1| Sua5/YciO/YrdC/YwlC family protein [Candidatus Puniceispirillum marinum IMCC1322] Length = 325 Score = 335 bits (859), Expect = 6e-90, Method: Composition-based stats. Identities = 130/333 (39%), Positives = 182/333 (54%), Gaps = 19/333 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M N++ +A + L AG +A PTETVYGL D+ N A+ +++ K RP+ NPL Sbjct: 1 MTECLSISENSVARAVDLLRAGQLVAFPTETVYGLGGDACNDHAVAGIFKTKGRPSFNPL 60 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 I HV+ I M ++ LA FWPG +T++LD + L+TA L RVP Sbjct: 61 ISHVATIDMAFTLGKKTAIAEILAYNFWPGAMTMILDRTKDCKVSMLTTAGLDKIAVRVP 120 Query: 121 CGFTK-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 +L+ ++G PLA PSAN SG+IS + V H++ + +I LI+DGG + GLEST Sbjct: 121 SHEAATQLLSSFGGPLAAPSANPSGRISPSTVSHVI-DGLGGQIDLILDGGACESGLEST 179 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAIS------VELEYCVDETSTPQSPGMLKSHYAPR 233 I++ V ILRPGG+ + + ++ +E ++ P SPG L SHYAP+ Sbjct: 180 IIDCSANIPV-ILRPGGITRDAVNDVLNQAGHRLLEQTIAGNDDKRPVSPGQLASHYAPQ 238 Query: 234 SQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293 VR+ A + E I FG+ + LNLS +G L EAA NLF + AD G Sbjct: 239 LGVRMNATNAEDTEIAIGFGSQMHE------APLNLSLSGNLTEAAANLFALLHKADKLG 292 Query: 294 AS----SIAFSSIPNHGLGIAINNRLERAAAPR 322 A IA + IP+H LG AIN+RL RA+APR Sbjct: 293 AKQNATHIAIAPIPDHELGEAINDRLRRASAPR 325 >gi|56965628|ref|YP_177362.1| translation factor SUA5 [Bacillus clausii KSM-K16] gi|56911874|dbj|BAD66401.1| translation factor SUA5 [Bacillus clausii KSM-K16] Length = 342 Score = 335 bits (859), Expect = 7e-90, Method: Composition-based stats. Identities = 108/331 (32%), Positives = 174/331 (52%), Gaps = 14/331 (4%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 I S + +++A ++ IA PTETVYGL ++ + A+ +++ K RP+ NPLI Sbjct: 15 IDSDKQTEMIQEAALWIKQNKLIAFPTETVYGLGANALSYEAVAQIFAAKGRPSDNPLIV 74 Query: 63 HVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 H+ D S + K PL + L FWPG LTL+L+ + I TA L T R+P Sbjct: 75 HIGDSSQLDKLVKSIPLNANKLMAAFWPGALTLILE--AKEAIAENVTAGLSTVGVRMPS 132 Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 KL++ G P+A PSAN SG+ S T H++ + + +I I+DGG + IGLEST+ Sbjct: 133 HPVALKLLQECGLPVAAPSANMSGRPSPTTAAHVI-ADLDGKIDGIVDGGSTGIGLESTV 191 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCVD-ETSTPQSPGMLKSHYAPRSQVRL 238 ++V + + RPGG+ +E ++ I ++++ ++ S P+SPGM +HYAP ++V L Sbjct: 192 LDVSKPTPM-LYRPGGVSVEEIEAVIGKIDIDPALETADSAPKSPGMKYTHYAPNAEVIL 250 Query: 239 RAIHVNPREALIRFGNVPIK-----NIENAIISLNLSKTG-KLKEAAFNLFNYMKIADDS 292 + + K A ++ + G L+ A L+ ++ D+ Sbjct: 251 VDSDDSIHHLVAEAKKEGRKVAVFATTGTADYKADIVRRGESLEHTAHILYGVLRDFDEQ 310 Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAAPRN 323 GA I ++P G+G AI NRLE+AA + Sbjct: 311 GADIIYVKTVPTEGVGRAIMNRLEKAAGGKR 341 >gi|256850893|ref|ZP_05556282.1| Sua5 family translation factor [Lactobacillus jensenii 27-2-CHN] gi|260661107|ref|ZP_05862021.1| Sua5 family translation factor [Lactobacillus jensenii 115-3-CHN] gi|282934195|ref|ZP_06339473.1| hypothetical protein HMPREF0886_1793 [Lactobacillus jensenii 208-1] gi|256615955|gb|EEU21143.1| Sua5 family translation factor [Lactobacillus jensenii 27-2-CHN] gi|260548044|gb|EEX24020.1| Sua5 family translation factor [Lactobacillus jensenii 115-3-CHN] gi|281301809|gb|EFA94075.1| hypothetical protein HMPREF0886_1793 [Lactobacillus jensenii 208-1] Length = 333 Score = 335 bits (859), Expect = 7e-90, Method: Composition-based stats. Identities = 113/335 (33%), Positives = 177/335 (52%), Gaps = 19/335 (5%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 QI+ + + +A EFL G +A PTETVYGL + +++ +Y+ K RP+ NPLI Sbjct: 4 QILK---KDQIDQAVEFLKNGELVAFPTETVYGLGAIATKEESVKNVYKAKGRPSDNPLI 60 Query: 62 CHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 VSD M+K++A P + L K FWPGPLTL+L L+ + + T LKTA FR P Sbjct: 61 VTVSDEDMMKQYAKFIPERAEKLIKHFWPGPLTLLL-LVKEGSLPTVVTGGLKTAAFRCP 119 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 T +LI G+P+ PSAN S + S T +H+ + +I IIDGG +++GLEST Sbjct: 120 DDELTHELISKLGYPIVGPSANTSTKPSPTTAEHVY-HDLKGKISAIIDGGATEVGLEST 178 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQV 236 I+++ E + +LRPG + E L + + ++ V + + P++PGM HYAP + V Sbjct: 179 IIDLSVETPI-VLRPGQITPEELSKVLGEKVLINTGKVSDKTIPKAPGMKYRHYAPSAPV 237 Query: 237 RLRAIHVNPREALIRFGNVPIKNIENAIISLNL------SKTGKLKEAAFNLFNYMKIAD 290 + V + + + +++ + +L+L S LK+A NLF+ ++ D Sbjct: 238 WV-VDDVKDFSKISYTSDTAVAALDSVLDTLDLPAENKFSLGKDLKDADHNLFSALRFFD 296 Query: 291 DSG-ASSIAFSSIPNHGLGIAINNRLERAAAPRNQ 324 D +I +A NRL +AAA + Sbjct: 297 DEASIKTIYVQGFDEGEQSLAYMNRLNKAAAGHHY 331 >gi|297184204|gb|ADI20322.1| putative translation factor (sua5) [uncultured alpha proteobacterium EB080_L27A02] Length = 318 Score = 335 bits (859), Expect = 7e-90, Method: Composition-based stats. Identities = 131/322 (40%), Positives = 186/322 (57%), Gaps = 16/322 (4%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 +S+ A E L +G +A PTETVYGL ++ N A+ +Y KKRP NPLI HV + Sbjct: 8 INSDGYAYASEILKSGGLVAFPTETVYGLGANALNSDAVAEIYTAKKRPNFNPLIVHVLN 67 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + +K A + +L LA FWPGPLT+V + + T++ L TA L T RVP + Sbjct: 68 LETAQKFAVFNKDTLLLANKFWPGPLTVVAPIKNKTNLSKLITAGLDTVAIRVPAHPVAR 127 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 KL+ET+ P+A PSAN SG IS T+ H+ S + I I++GG +GLESTI+ + Sbjct: 128 KLLETFNGPIAAPSANPSGSISSTSAAHV-KSGLGGRIQAILNGGKCDVGLESTII-LSN 185 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245 + ILR GG+ + ++ + + + T SPG L SHYAP + +R+ AI + Sbjct: 186 NGQCNILRSGGISEKEIEEVLGYRISLN-QNSDTLISPGQLSSHYAPNANLRMNAIKADE 244 Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD----SGASSIAFSS 301 E +I FG+V + LNLS G L EAA NLF Y+ +AD+ G + IA + Sbjct: 245 DEYMIGFGDV--------VGQLNLSSQGNLIEAATNLFAYLHMADEDAITLGKTKIAIAK 296 Query: 302 IPNHGLGIAINNRLERAAAPRN 323 IP HGLG+AIN+RL RA+ P++ Sbjct: 297 IPMHGLGVAINDRLTRASTPKS 318 >gi|134300997|ref|YP_001114493.1| Sua5/YciO/YrdC/YwlC family protein [Desulfotomaculum reducens MI-1] gi|134053697|gb|ABO51668.1| translation factor SUA5 [Desulfotomaculum reducens MI-1] Length = 354 Score = 335 bits (859), Expect = 8e-90, Method: Composition-based stats. Identities = 112/342 (32%), Positives = 160/342 (46%), Gaps = 28/342 (8%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 S D + +A + G +A PTETVYGL + + A+ +Y K RP+ NPLI HV Sbjct: 14 SALDMRLINQAAAIIKRGGLVAFPTETVYGLGANGLDGKAVADIYRAKGRPSDNPLILHV 73 Query: 65 SDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 +D +MV++ + + P + L K FWPGPLTLV+ S I T L T R+P Sbjct: 74 ADTNMVRELSKNLPPKATLLMKKFWPGPLTLVVPRASH--IPREVTGGLATVAVRMPHHP 131 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 LI+ G P+A PSAN+SG+ S TN +H+ + I I+DGG + +GLEST+++ Sbjct: 132 VALALIKASGVPIAAPSANKSGRPSPTNAEHVKLD-LQGCIDAILDGGPAGLGLESTVLD 190 Query: 183 VQCEKKVRILRPGGLEIETLKRAIS------VELEYCVDETSTPQSPGMLKSHYAPRSQV 236 + V ILRPGG+ E L A+ L + + P+SPGM HYAP + + Sbjct: 191 LTGAAPV-ILRPGGVTYEQLLEALGDVTIDPSALGERLSKDKAPRSPGMKYKHYAPAAPL 249 Query: 237 RLRAIHVNPREALI------------RFGNVPIKNIENAIIS----LNLSKTGKLKEAAF 280 L +A I R G + + L + A Sbjct: 250 ILFEGEPEKVKAAIVERAEELLKGGKRVGILATEEHAQDYPPDSKILKIGSRKNPAGVAA 309 Query: 281 NLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 LF ++ D I G+G+A+ NRL RAA R Sbjct: 310 MLFKRLREFDQLQVDVILTEGFETKGIGLAVMNRLRRAAGER 351 >gi|75676880|ref|YP_319301.1| Sua5/YciO/YrdC/YwlC [Nitrobacter winogradskyi Nb-255] gi|74421750|gb|ABA05949.1| translation factor SUA5 [Nitrobacter winogradskyi Nb-255] Length = 328 Score = 335 bits (859), Expect = 8e-90, Method: Composition-based stats. Identities = 134/310 (43%), Positives = 186/310 (60%), Gaps = 6/310 (1%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 L G +A PTETVYGL D+ N A+ RLY K RPA NPLI HVSD++ ++ A Sbjct: 22 RILHNGGLVAFPTETVYGLGADAANAEAVARLYRAKGRPAFNPLIAHVSDLAAAQRIARF 81 Query: 77 DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPL 135 D +L L + FWPGPLTLVL ++ + L+TA+L T RVP + ++ +G + Sbjct: 82 DAAALALTEAFWPGPLTLVLPKVARCPVADLATASLDTIALRVPAHPVARAILRGFGGAV 141 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 PSAN SG +S T H+ + I LI+DGG ++G+ESTIV + +LRPG Sbjct: 142 VAPSANLSGHVSPTTAAHV-RHDLEGRIDLIVDGGPVEVGIESTIVGCF--DRPTLLRPG 198 Query: 196 GLEIETLKRAISVELEYCVDETS--TPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFG 253 G+ ++R + L + P++ GML SHYAPR+++RL A ++ P EAL+ FG Sbjct: 199 GISRADIERVLGGPLVSPAPAAADGRPRASGMLASHYAPRARMRLNAANLAPGEALLAFG 258 Query: 254 NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINN 313 V I+ A+ +NLS+ G LKEAA +LF ++ D SGA +IA + IP GLG AIN+ Sbjct: 259 PVDPPGIDTAVAVMNLSERGDLKEAAAHLFGCLRALDASGARTIAVTPIPEDGLGEAIND 318 Query: 314 RLERAAAPRN 323 RL RAAAP+ Sbjct: 319 RLRRAAAPKG 328 >gi|91975727|ref|YP_568386.1| Sua5/YciO/YrdC/YwlC [Rhodopseudomonas palustris BisB5] gi|91682183|gb|ABE38485.1| translation factor SUA5 [Rhodopseudomonas palustris BisB5] Length = 330 Score = 335 bits (859), Expect = 8e-90, Method: Composition-based stats. Identities = 137/310 (44%), Positives = 178/310 (57%), Gaps = 6/310 (1%) Query: 18 FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77 L G I PTETVYGL D+ NP A+ RLY K RP+ NPLI HV+ + + A D Sbjct: 23 CLRGGGLIGFPTETVYGLGADAANPAAVARLYAAKGRPSFNPLIAHVASLDSARGLARFD 82 Query: 78 PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136 +L LA+ FWPGPLTLVL + L+TA L T R+P + ++ +G + Sbjct: 83 ATALRLAEAFWPGPLTLVLPKAPGCTVSDLATAGLDTVAVRIPAHPVAQAILRAFGGAVV 142 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSANRSG +S T H+ + + I LI+DGG ++G+ESTI+ V +LRPGG Sbjct: 143 APSANRSGHVSPTTAAHV-RADLDGRIDLIVDGGPVEVGVESTILGCCLGAPV-LLRPGG 200 Query: 197 LEIETLKRAIS---VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFG 253 E ++R + E P +PGML SHYAP +QVRL A V P EAL+ FG Sbjct: 201 APREAIERLLGFALAEPAAAPAGDHAPLAPGMLASHYAPGAQVRLDARDVRPGEALLGFG 260 Query: 254 NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINN 313 V + E A NLS G L EAA +LF +++ D SGA +IA IP+ GLG AIN+ Sbjct: 261 PVALPGAEAASAIRNLSPAGDLAEAAAHLFGFLRELDASGAQAIAVMPIPHQGLGEAIND 320 Query: 314 RLERAAAPRN 323 RL RAAAPR+ Sbjct: 321 RLRRAAAPRD 330 >gi|114569382|ref|YP_756062.1| translation factor SUA5 [Maricaulis maris MCS10] gi|114339844|gb|ABI65124.1| translation factor SUA5 [Maricaulis maris MCS10] Length = 327 Score = 334 bits (858), Expect = 9e-90, Method: Composition-based stats. Identities = 130/322 (40%), Positives = 177/322 (54%), Gaps = 13/322 (4%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 I +D + +A L AG +A+PTETVYGLA D+ N A+ RLY K RP NPLI Sbjct: 15 IKPASDPAVIEEAVAILKAGGLVAMPTETVYGLAADAGNADAVARLYAAKGRPRFNPLIA 74 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 HV+ +M + A L+ LA+ FWPGPLTLVL I ++ A L + R P Sbjct: 75 HVAGPNMAWRLAGWPDLADQLAESFWPGPLTLVLPKRPDAPIADIANAGLDSIALRAPRH 134 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 + LI + PL PSAN SG +S T H+ + + I LI+DGG +GLEST++ Sbjct: 135 AAAQALIRAFDGPLVAPSANPSGAVSPTTAAHV-AEGLGDRIDLILDGGACPVGLESTVI 193 Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241 + +LRPGGL ++ + + +PGM+KSHYAP + +RL A Sbjct: 194 ALLGGTP-TLLRPGGLARRQIEAITGRLAD--AGDGEALLAPGMMKSHYAPNAAMRLGAE 250 Query: 242 HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSS 301 P E L+ FG + LNLS+TG L EAA LF ++ D GA+ IA + Sbjct: 251 TAQPGEVLLGFGTISGD--------LNLSETGDLAEAATGLFAALRTLDARGATRIAVAP 302 Query: 302 IPNHGLGIAINNRLERAAAPRN 323 IP+ GLG AIN+RL+RAAAP++ Sbjct: 303 IPDEGLGEAINDRLQRAAAPKD 324 >gi|323702620|ref|ZP_08114282.1| Sua5/YciO/YrdC/YwlC family protein [Desulfotomaculum nigrificans DSM 574] gi|323532439|gb|EGB22316.1| Sua5/YciO/YrdC/YwlC family protein [Desulfotomaculum nigrificans DSM 574] Length = 354 Score = 334 bits (858), Expect = 9e-90, Method: Composition-based stats. Identities = 117/337 (34%), Positives = 164/337 (48%), Gaps = 28/337 (8%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D N + +A + + G +A PTETVYGL + + TA+ +Y K RP+ NPLI HV+D Sbjct: 17 DQNVIDRAAQIIKNGGLVAFPTETVYGLGANGLDGTAVAGIYRAKGRPSDNPLILHVADF 76 Query: 68 SMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 +M + A + P++ L FWPGPLTLV+ I T L T R+P Sbjct: 77 AMAEALSAGLPPVAGMLMDKFWPGPLTLVVPR--ANHIPGQVTGGLDTVGIRMPSHPVAL 134 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LI+ G P+A PSANRSG+ S T H+ + + I I+DGG + +GLEST+++V Sbjct: 135 ALIKAAGVPIAAPSANRSGRPSPTRAAHV-QADLQGRIDAILDGGPTGVGLESTVLDVSG 193 Query: 186 EKKVRILRPGGLEIETLKRAISVE------LEYCVDETSTPQSPGMLKSHYAPRSQVRL- 238 E+ V ILRPGG+ E L + L + P+SPGM +HYAP + + L Sbjct: 194 EQPV-ILRPGGVTYEQLADLLPRVTIDPSILGKKLSRDQAPRSPGMKYTHYAPAAPLTLF 252 Query: 239 --------RAIHVNPREALIRFGNVPIKNIE-------NAIISLNLSKTGKLKEAAFNLF 283 +AI E L R V I E + L + + AA LF Sbjct: 253 EGEPARVVQAIARRAAEQLARGSRVGILAFEENAPYYPRGAVILTMGQQKNPATAANMLF 312 Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ D I + G+G+AI NRL RAA Sbjct: 313 ALLRQFDRLKVEVILAEGMEPKGIGLAIMNRLRRAAG 349 >gi|163738876|ref|ZP_02146289.1| Sua5/YciO/YrdC family protein [Phaeobacter gallaeciensis BS107] gi|161387681|gb|EDQ12037.1| Sua5/YciO/YrdC family protein [Phaeobacter gallaeciensis BS107] Length = 315 Score = 334 bits (858), Expect = 9e-90, Method: Composition-based stats. Identities = 125/315 (39%), Positives = 171/315 (54%), Gaps = 13/315 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + A + L G +A PTETVYGL D+R A+ LY K RP+ NPLI HV + Sbjct: 13 PQEISTAADLLKEGQLVAFPTETVYGLGADARQTNAVEALYAAKGRPSFNPLIAHVHSVE 72 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127 ++H ++ LA+ FWPGPLTLVL L I PL TA L T R+P + L Sbjct: 73 TAQRHVIWSDIADTLAEAFWPGPLTLVLPLREDHGISPLVTAGLNTLGIRIPAHPAARAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + P+A PSAN SG+IS T H++ + + I ++D G +G+ESTI+ + Sbjct: 133 LSVLDGPVAAPSANPSGRISPTTAAHVI-AGLGGRIAAVVDDGPCGVGVESTIIGLATGT 191 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 + +LRPGGL E ++ + L + D + +PG L SHYAPR+ VRL E Sbjct: 192 PL-LLRPGGLATEEIEAVLGHTL-HLRDASDPLTAPGQLLSHYAPRASVRLNVTTPQDGE 249 Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307 + FG + LNLS +G L+EAA LF ++ D A IA + IP+ GL Sbjct: 250 LYLGFGAMECD--------LNLSASGDLREAAAQLFGHLHRLDAR-AQPIAVAPIPDAGL 300 Query: 308 GIAINNRLERAAAPR 322 G+AIN+RL RAAAPR Sbjct: 301 GVAINDRLRRAAAPR 315 >gi|297205770|ref|ZP_06923165.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus jensenii JV-V16] gi|297148896|gb|EFH29194.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus jensenii JV-V16] Length = 337 Score = 334 bits (858), Expect = 1e-89, Method: Composition-based stats. Identities = 114/337 (33%), Positives = 178/337 (52%), Gaps = 18/337 (5%) Query: 2 QIMS--ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 +IM I + + +A EFL G +A PTETVYGL + +++ +Y+ K RP+ NP Sbjct: 3 KIMETQILKKDQIDQAVEFLKNGELVAFPTETVYGLGAIATKEESVKNVYKAKGRPSDNP 62 Query: 60 LICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 LI VSD M+K++A P + L K FWPGPLTL+L L+ + + T LKTA FR Sbjct: 63 LIVTVSDEDMMKQYAKFIPERAEKLIKHFWPGPLTLLL-LVKEGSLPTVVTGGLKTAAFR 121 Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 P T +LI G+P+ PSAN S + S T +H+ + +I IIDGG +++GLE Sbjct: 122 CPDDELTHELISKLGYPIVGPSANTSTKPSPTTAEHVY-HDLKGKISAIIDGGATEVGLE 180 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRS 234 STI+++ E + +LRPG + E L + + ++ V + + P++PGM HYAP + Sbjct: 181 STIIDLSVETPI-VLRPGQITPEELSKVLGEKVLINTGKVSDKTIPKAPGMKYRHYAPSA 239 Query: 235 QVRLRAIHVNPREALIRFGNVPIKNIENAIISLNL------SKTGKLKEAAFNLFNYMKI 288 V + V + + + +++ + +L+L S LK+A NLF+ ++ Sbjct: 240 PVWV-VDDVKDFSKISYTSDTAVAALDSVLDTLDLPAENKFSLGKDLKDADHNLFSALRF 298 Query: 289 ADDSG-ASSIAFSSIPNHGLGIAINNRLERAAAPRNQ 324 DD +I +A NRL +AAA + Sbjct: 299 FDDEASIKTIYVQGFDEGEQSLAYMNRLNKAAAGHHY 335 >gi|257870911|ref|ZP_05650564.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus gallinarum EG2] gi|257805075|gb|EEV33897.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus gallinarum EG2] Length = 342 Score = 334 bits (858), Expect = 1e-89, Method: Composition-based stats. Identities = 108/337 (32%), Positives = 178/337 (52%), Gaps = 21/337 (6%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ + L +A + L AG +A PTETVYGL ++ P A+ ++Y +K RP+ NPL Sbjct: 1 METKKFS-EEQLSEAAKILAAGGLVAFPTETVYGLGANALLPEAVAQVYAVKGRPSDNPL 59 Query: 61 ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I H++D +K + + P + L FWPGPLTL+ + + + + + T L TA FR+ Sbjct: 60 IVHLADPEQLKDYVDNLHPAAEKLMAKFWPGPLTLIFSIKNNS-LPSIVTGGLSTAAFRM 118 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T +I+ PL PSAN SG+ S T+ +H+L + +I +ID G ++IG+ES Sbjct: 119 PANKKTLSVIKQAHVPLVGPSANTSGKPSPTSAEHVL-HDLKGKIAGVIDDGTTRIGVES 177 Query: 179 TIVNVQCEK-KVRILRPGGLEIETLKRAISVELE---YCVDETSTPQSPGMLKSHYAPRS 234 T++++ ILRPG + E L+ + E+E + V E P++PGM HYAP + Sbjct: 178 TVLDLSDPTANPMILRPGAVTKEQLETVLGSEVEIDKHLVSEGERPKAPGMKYKHYAPDT 237 Query: 235 QVRLRAIHVNP------REALIRFGNVPIKNIENAI----ISLNLSKTGKLKEAAFNLFN 284 +V + P ++ +R G + +I ++ + ++ AA LF Sbjct: 238 KVVMVRSEDWPAALDWVKQKRLRAGVLAGPSICETARFETAAVYMYADDTVEAAAKGLFA 297 Query: 285 YMKIADD--SGASSIAFSSIPNHGLGIAINNRLERAA 319 ++ D+ +G I ++ P G+G A NRL++AA Sbjct: 298 GLRALDESIAGLEIILAAAFPETGMGSAYMNRLKKAA 334 >gi|83952430|ref|ZP_00961161.1| Sua5/YciO/YrdC family protein [Roseovarius nubinhibens ISM] gi|83836103|gb|EAP75401.1| Sua5/YciO/YrdC family protein [Roseovarius nubinhibens ISM] Length = 317 Score = 334 bits (858), Expect = 1e-89, Method: Composition-based stats. Identities = 127/316 (40%), Positives = 176/316 (55%), Gaps = 13/316 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D+ +A L G +A+PTETVYGL D+RN A+ R++E K RP NPLI HV I Sbjct: 14 DAEGHARAAAILRDGGLVALPTETVYGLGGDARNDMAVARIFEAKGRPRFNPLIVHVDSI 73 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + + + LA+ FWPGPLTLVL L + PL TA+L T R+P ++ Sbjct: 74 DRAQAYVHWSDQADRLAQAFWPGPLTLVLPLRDDAGLSPLVTADLPTLAIRLPAHPVAQR 133 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+ + P+A PSAN SG+IS T H+L + + I ++DGG +GLESTI+ + Sbjct: 134 LLSEFAGPVAAPSANPSGRISPTTADHVL-AGLGGRIAAVLDGGACDVGLESTILGL--G 190 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246 + +LRPGGL ++ A+ + L + +PG + SHYAP + VRL A P Sbjct: 191 RSPTLLRPGGLPTGPIEAALGMALVHHSTGDPLV-APGQMASHYAPGASVRLNARAAEPG 249 Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306 E + FG + LNLS +G L EAA NLF ++ D IA + +P+ G Sbjct: 250 ELFLGFGPM--------DCDLNLSASGDLTEAAANLFGHLHALDARAPDGIAVAPVPDTG 301 Query: 307 LGIAINNRLERAAAPR 322 LG+AIN+RL RAAAPR Sbjct: 302 LGLAINDRLRRAAAPR 317 >gi|83854875|ref|ZP_00948405.1| Sua5/YciO/YrdC family protein [Sulfitobacter sp. NAS-14.1] gi|83842718|gb|EAP81885.1| Sua5/YciO/YrdC family protein [Sulfitobacter sp. NAS-14.1] Length = 314 Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats. Identities = 126/323 (39%), Positives = 179/323 (55%), Gaps = 10/323 (3%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M + D + + +A L G +A+PTETVYGL D+RN TA+ +YE K RP+ NPL Sbjct: 1 MTEILPADPSGISRAATLLQQGALVALPTETVYGLGADARNGTAVAGIYEAKGRPSFNPL 60 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 I HV+D+ +++ + LA FWPGP+TLVL L + L TA L + RVP Sbjct: 61 IIHVADVDQARRYGRWSDTAEILASAFWPGPMTLVLPLADGHGLSSLVTAGLDSVGIRVP 120 Query: 121 CGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + ++ G P+A PSAN SG+IS T +H+LS + I ++D G +GLEST Sbjct: 121 AHPTARAILRALGGPVAAPSANPSGKISATTAQHVLS-GLEGRIAAVVDDGPCTVGLEST 179 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 I+ + + + +LR GGL E ++ A+ L+ + + +PG L SHYAP ++VRL Sbjct: 180 IIGL-NQPRPTLLRAGGLPSEAIEAALGAPLDVA--DGAEIIAPGQLASHYAPHARVRLN 236 Query: 240 AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF 299 A E + FG ++ L LS +G L EAA +LF+ + D IA Sbjct: 237 AQAATDDEVYLGFGAASGSGPDD----LTLSASGDLVEAAAHLFDRLHALDRLR-KPIAV 291 Query: 300 SSIPNHGLGIAINNRLERAAAPR 322 + IP GLG AIN+RL RAAAPR Sbjct: 292 APIPETGLGRAINDRLRRAAAPR 314 >gi|304385307|ref|ZP_07367652.1| Sua5/YciO/YrdC/YwlC family protein [Pediococcus acidilactici DSM 20284] gi|304328514|gb|EFL95735.1| Sua5/YciO/YrdC/YwlC family protein [Pediococcus acidilactici DSM 20284] Length = 340 Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats. Identities = 109/336 (32%), Positives = 169/336 (50%), Gaps = 20/336 (5%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 + I S L A + G +A PTETVYGL D+ NP A++++Y+ K RP+ NPLI Sbjct: 1 MSEIFQSENLADAAAAIQRGELVAFPTETVYGLGADATNPDAVKKVYQAKGRPSDNPLIV 60 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC- 121 HV+ + V + A +D S L FWPGPLT++L + + P+ T L TA FR P Sbjct: 61 HVTGPAQVAEFAEIDAQSKQLMDTFWPGPLTIILPIKPHA-LDPVVTGGLTTAAFRNPDT 119 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 T KLIE G PL PSAN SG+ S T H++ + +I ++DGG +KIG+EST++ Sbjct: 120 PLTLKLIEQAGVPLVGPSANTSGKPSPTKPAHVM-HDLNGKIAGVLDGGETKIGVESTVL 178 Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 ++ +LRPG + E L + + V + P++PGM HYAP +QV + Sbjct: 179 DMSGAVP-SVLRPGAVTPEDLTPILGEVQTDHHKVGKDEVPKAPGMKYKHYAPNAQVYIV 237 Query: 240 AIHVNPREA--LIRFGNVPIKNIENAIISLN-----------LSKTGKLKEAAFNLFNYM 286 + A + + P+ + + I + +S + A+ +LF+ + Sbjct: 238 KDAQWSKVADWVAQHAQQPVGVLATSAIFDSTKLIDFDNVDFISLGEDARTASHHLFDGL 297 Query: 287 KIAD-DSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 + D I + G+G A NRL+++A Sbjct: 298 RTFDGKPQIKVIFAQAFDPTGIGAAYMNRLQKSAGN 333 >gi|163745661|ref|ZP_02153021.1| Sua5/YciO/YrdC family protein [Oceanibulbus indolifex HEL-45] gi|161382479|gb|EDQ06888.1| Sua5/YciO/YrdC family protein [Oceanibulbus indolifex HEL-45] Length = 310 Score = 333 bits (856), Expect = 1e-89, Method: Composition-based stats. Identities = 128/315 (40%), Positives = 178/315 (56%), Gaps = 14/315 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A L G +A+PTETVYGL D+RN A+ +Y K RP+ NPLI H+ DI Sbjct: 9 PQGIARAARLLQDGALVALPTETVYGLGADARNGAAVAGIYAAKGRPSFNPLIVHLPDIE 68 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKL 127 K++ + LA+ FWPG LTLVL L + + L TA L + RVP +++ Sbjct: 69 TAKRYVQWTDEADRLAQAFWPGALTLVLPLRPDSGLSSLVTAGLASLAVRVPAHPAMRQV 128 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ P+A PSAN SG+IS T H+L + + +I ++D G +GLESTI+ + + Sbjct: 129 LQALDGPVAAPSANPSGKISATTAAHVL-AGLDGKIAAVLDDGACSVGLESTIIGLTGPR 187 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 +LR GGL E ++ + LE + + +PG L SHYAP + VRL A P E Sbjct: 188 PA-LLRAGGLPSEAIEAVLGQTLEIV--DGAEIIAPGQLASHYAPGAAVRLDAETAGPGE 244 Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307 L+ FG + I LNLS G L EAA NLF+++ D +G IA + IP+HGL Sbjct: 245 VLLGFGTM--------ICDLNLSPAGDLTEAAANLFDHLHQLDATG-QQIAVAPIPDHGL 295 Query: 308 GIAINNRLERAAAPR 322 G AIN+RL RAAAPR Sbjct: 296 GRAINDRLARAAAPR 310 >gi|85714355|ref|ZP_01045343.1| Sua5/YciO/YrdC/YwlC [Nitrobacter sp. Nb-311A] gi|85698802|gb|EAQ36671.1| Sua5/YciO/YrdC/YwlC [Nitrobacter sp. Nb-311A] Length = 360 Score = 333 bits (856), Expect = 2e-89, Method: Composition-based stats. Identities = 131/310 (42%), Positives = 183/310 (59%), Gaps = 6/310 (1%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 L G +A PTETVYGL D+ N AI RLY K RPA NPLI HVSD++ ++ A Sbjct: 54 RLLRDGGLVAFPTETVYGLGADAANAEAIARLYRAKGRPAFNPLIAHVSDLAAAQRIARF 113 Query: 77 DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPL 135 + ++L LA FWPGPLTLVL + + L+TA L T RVP + ++ +G + Sbjct: 114 NAIALALADAFWPGPLTLVLPKSAQCPVADLATAGLDTIALRVPAHPVARAILRGFGGAV 173 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 PSAN SG +S T H+ S + I LI+DGG ++G+ESTIV + +LRPG Sbjct: 174 VAPSANLSGHVSPTTAAHV-QSDLAGRIDLIVDGGPVEVGIESTIVGCF--DRPTLLRPG 230 Query: 196 GLEIETLKRAISVELEYCVDETS--TPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFG 253 G+ ++R + L + P++ GML SHYAPR++VRL A+++ EAL+ FG Sbjct: 231 GISRADIERVLGRTLASPDPGAADGQPRASGMLASHYAPRAKVRLNAVNLARGEALLAFG 290 Query: 254 NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINN 313 + I+ A+ +NLS+ L+EAA NLF ++ D SG +IA +P+ GLG AIN+ Sbjct: 291 PADLSGIDAAVAVMNLSERRDLEEAAANLFGCLRALDASGVRTIAVMPVPDEGLGEAIND 350 Query: 314 RLERAAAPRN 323 RL RAA P+ Sbjct: 351 RLRRAAVPQG 360 >gi|67459737|ref|YP_247361.1| putative translation factor protein [Rickettsia felis URRWXCal2] gi|67005270|gb|AAY62196.1| Putative translation factor protein [Rickettsia felis URRWXCal2] Length = 361 Score = 333 bits (856), Expect = 2e-89, Method: Composition-based stats. Identities = 121/313 (38%), Positives = 171/313 (54%), Gaps = 14/313 (4%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 KA +F+ +G + PTETVYG+ D+ N A ++++ K RPA+NPLI HVS I K+ Sbjct: 54 KAVQFIKSGKVVVFPTETVYGIGADATNNEACLKIFQFKNRPAINPLIVHVSSIEQAKEI 113 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYG 132 + L+ +A+ FWPGPL++V+ L +I P TA L T R+P +LI G Sbjct: 114 GEFNDLATKIAEKFWPGPLSIVVSLKENANIAPSVTAGLNTIAIRIPSYPLALELIRQSG 173 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI--SKIGLESTIVNVQCEKKVR 190 P+A PSAN S IS TN +H+ + I+ I S+ GLESTI++ Sbjct: 174 VPIAAPSANPSNYISPTNAEHVTKHFKDNQEIFILAPEIYQSEYGLESTIIDTTTATP-T 232 Query: 191 ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALI 250 ILR G + E L+ + V++ ++PGML HY+P VRL A ++ RE + Sbjct: 233 ILREGFITAEILEEVLGVKVFKVT--NDVVKAPGMLAKHYSPNVPVRLNATNLEDREIGL 290 Query: 251 RFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD----SGASSIAFSSIPNHG 306 FGN + SLNLS G+L EAA NL+ Y++I DD IA + IP Sbjct: 291 NFGNSNL----TGKFSLNLSLKGELIEAAANLYAYLRILDDYAASHDVRGIAVAPIPRVN 346 Query: 307 LGIAINNRLERAA 319 +G AIN+RL+RAA Sbjct: 347 IGAAINDRLKRAA 359 >gi|227889715|ref|ZP_04007520.1| translation factor (SUA5) [Lactobacillus johnsonii ATCC 33200] gi|227849579|gb|EEJ59665.1| translation factor (SUA5) [Lactobacillus johnsonii ATCC 33200] Length = 336 Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats. Identities = 112/330 (33%), Positives = 160/330 (48%), Gaps = 13/330 (3%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ I + + +A L G +A PTETVYGL + N A++ +Y K RP+ NPL Sbjct: 7 MET-KILNKEQIPEAVALLRKGELVAFPTETVYGLGALATNEKAVKSVYAAKGRPSDNPL 65 Query: 61 ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I VSD M++K+ V + L K FWPGPLT++L + T + T L TA FR Sbjct: 66 IVTVSDEEMMEKYVNEVPERAKKLIKHFWPGPLTIILFVKEGT-LPDAVTGGLPTAAFRC 124 Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T LI G P+ PSAN S + S T +H+ + +I IID G ++IGLES Sbjct: 125 PNDDMTHDLISELGKPIVGPSANTSTKPSPTTAEHVF-HDLKGKIAGIIDNGPTEIGLES 183 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQ 235 TIV++ EK +LRPG + E + + E+ P++PGM HYAP + Sbjct: 184 TIVDLSVEKP-TVLRPGEITPEEISAVLGEEVLMNRGTTQTKGVPKAPGMKYRHYAPSAP 242 Query: 236 VRLRAIHVN--PREALIRFGNVPIKNIENAIISLNLSKTGK-LKEAAFNLFNYMKIADDS 292 V + + + G + + I S N GK + +AA NLF ++ DD Sbjct: 243 VLIVDKKEDFSKIQWDDETGVAALDEVLENIDSPNKYSLGKTIDKAAHNLFGALRYFDDE 302 Query: 293 G-ASSIAFSSIPNHGLGIAINNRLERAAAP 321 I + + A NRL +AAA Sbjct: 303 NKIKRIYVQGFDHGAISAAYMNRLNKAAAG 332 >gi|157804239|ref|YP_001492788.1| bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase [Rickettsia canadensis str. McKiel] gi|157785502|gb|ABV74003.1| bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase [Rickettsia canadensis str. McKiel] Length = 312 Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats. Identities = 119/315 (37%), Positives = 175/315 (55%), Gaps = 13/315 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + KA +F+ +G + PTETVYG+ D+ N A ++++ K RPA+NPLI HV+ I K Sbjct: 2 INKAVQFIKSGKVVVFPTETVYGIGADATNNEACLKIFQFKNRPAINPLIVHVASIEQAK 61 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIET 130 + + L+ +A+ FW GPL++V+ L +I TA L T R+P +LI Sbjct: 62 EIGEFNDLATKIAEKFWSGPLSIVVPLKKNVNIALSVTAGLNTIAIRMPSYPLALELIRQ 121 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI--SKIGLESTIVNVQCEKK 188 G P+A PSAN S IS TN +H+ E I+ I S+ GLESTI++ Sbjct: 122 SGKPIAAPSANPSNYISPTNAEHVTKHFKDNEEIFILAPEIYQSEYGLESTIIDTTTATP 181 Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248 +LR G + E L++ +E+ ETST ++PGML HY+P+ +RL A ++ +E Sbjct: 182 -TLLREGFIMSEVLEKTFGIEI-LKASETSTIKAPGMLAKHYSPKVPIRLNATNLEDKEI 239 Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD----SGASSIAFSSIPN 304 + FGN +K LNLS G L EAA NL+ Y++I DD IA + +P+ Sbjct: 240 GLNFGNRNLKG----RFLLNLSPKGDLIEAAANLYAYLRILDDYAASHDIEYIAVAPVPS 295 Query: 305 HGLGIAINNRLERAA 319 +G AIN+RL+RAA Sbjct: 296 VNIGAAINDRLKRAA 310 >gi|299537975|ref|ZP_07051261.1| hypothetical protein BFZC1_18255 [Lysinibacillus fusiformis ZC1] gi|298726557|gb|EFI67146.1| hypothetical protein BFZC1_18255 [Lysinibacillus fusiformis ZC1] Length = 344 Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats. Identities = 118/347 (34%), Positives = 176/347 (50%), Gaps = 24/347 (6%) Query: 1 MQ-IMSITDSNA-----LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR 54 M+ + + DSN +A + L+AG +A PTETVYGL + N A+++++E K R Sbjct: 1 MKTVCKVVDSNVNSQINYTQAVDILNAGEVVAFPTETVYGLGAIATNDLAVKKIFEAKGR 60 Query: 55 PAMNPLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK 113 P+ NPLI HV V + + ++ LFWPGPLTLV+ + TA L Sbjct: 61 PSDNPLIVHVGTKEEVAIYIDHITDIAKQCMDLFWPGPLTLVMPAKPNV-LAKSVTAGLS 119 Query: 114 TACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172 T R+P L++ PLA PSANRSG+ S T H+L + IP I+DGG + Sbjct: 120 TVGIRMPDHPVALALLQQLQKPLAAPSANRSGKPSPTEAVHVL-DDLEGYIPYILDGGST 178 Query: 173 KIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDE---TSTPQSPGMLKSH 229 IGLEST+++V E V ILRPGG+ E L+ I ++ E +TP++PGM +H Sbjct: 179 GIGLESTVLDVTHEPPV-ILRPGGITKEMLEAKIGPVIQPTKIEQKLDATPKAPGMKYTH 237 Query: 230 YAPRSQVRLRAIHVNP--------REALIRFGNVPIKNIEN--AIISLNLSKTGKLKEAA 279 YAP + V L V + R + +N E ++ + G +E Sbjct: 238 YAPNAPVYLIDCDVEKVNEAVLHLQRQGHRVALLAPENFEEIKVDFYFSIGEAGSKEEMG 297 Query: 280 FNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326 L+N ++ D + A+ I ++ G+G AI NRLE+A+ + S Sbjct: 298 AALYNALRACDKTTATVILATTTSIEGVGAAIMNRLEKASGGKWYSL 344 >gi|239948185|ref|ZP_04699938.1| Sua5/YciO/YrdC/YwlC family protein [Rickettsia endosymbiont of Ixodes scapularis] gi|239922461|gb|EER22485.1| Sua5/YciO/YrdC/YwlC family protein [Rickettsia endosymbiont of Ixodes scapularis] Length = 312 Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats. Identities = 126/315 (40%), Positives = 179/315 (56%), Gaps = 13/315 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + KA E++ +G + +PTETVYG+ D+ N A ++++ K RPA+NPLI HV+ I K Sbjct: 2 ISKAVEYIKSGKVVVLPTETVYGIGADATNNEACLKIFQFKNRPAINPLIVHVASIEQAK 61 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIET 130 + + L+ +A+ FWPGPL++V+ L +I P T L T R+P +LI Sbjct: 62 EIGEFNDLATKIAEKFWPGPLSIVVPLKVNANIAPSVTVGLNTIAIRMPSYPLALELIRQ 121 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI--SKIGLESTIVNVQCEKK 188 G P+A PSAN S IS TNV+H+ I+ I S+ GLESTI++ Sbjct: 122 SGVPIAAPSANPSNYISPTNVEHVTKHFSENAEIFILAPEIYQSEYGLESTIID-TTTVT 180 Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248 ILR G + E L+ + V++ ETST ++PGML +HY+P+ VRL AI++ +E Sbjct: 181 PTILREGFITAEILEEVLGVKV-LKASETSTIKAPGMLATHYSPKVPVRLNAINLEDKEI 239 Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD----SGASSIAFSSIPN 304 + FGN + SLNLS G L EAA NL+ Y++I DD SSIA IP Sbjct: 240 GLNFGNSNL----TGKFSLNLSAKGNLIEAAANLYAYLRILDDYAAAHDVSSIAVVPIPQ 295 Query: 305 HGLGIAINNRLERAA 319 +G AIN+RL+RAA Sbjct: 296 VNIGAAINDRLKRAA 310 >gi|254557153|ref|YP_003063570.1| SUA5 family translation factor [Lactobacillus plantarum JDM1] gi|254046080|gb|ACT62873.1| SUA5 family translation factor [Lactobacillus plantarum JDM1] Length = 339 Score = 333 bits (854), Expect = 3e-89, Method: Composition-based stats. Identities = 109/339 (32%), Positives = 172/339 (50%), Gaps = 25/339 (7%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ + + A L AG +A PTETVYGL D+ N A++++Y K RP+ NPL Sbjct: 1 MET-KVYTPAEIPAAAALLTAGQLVAFPTETVYGLGADATNVDAVKQVYLAKGRPSDNPL 59 Query: 61 ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I HV+D+ V++ A + + L K FWPGPLT++ L + P T L+TA FR Sbjct: 60 IVHVADVETVERFAQPLSEAAKKLIKAFWPGPLTMIFKLKPDA-LAPEVTGGLQTAAFRN 118 Query: 120 PCGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P LI G P+ PSAN SG+ S T +H+L + +I I+D G +K+G+ES Sbjct: 119 PDNEATLALIRAAGTPIVGPSANTSGKPSPTTAQHVL-HDLRGKIAGILDDGPTKVGVES 177 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELE---YCVDETSTPQSPGMLKSHYAPRSQ 235 T++++ ++ ILRPG + E ++R I + ++ + V P++PGM HYAP +Q Sbjct: 178 TVLDLSTDQPA-ILRPGAVTPEAIERVIGMPVQTELHHVGAKEVPKAPGMKYKHYAPNAQ 236 Query: 236 VRLRAIHVNPREALIRFGNVPIK-------------NIENAIISLNLSKTGKLKEAAFNL 282 V + + EAL + I + +L + ++ A+ L Sbjct: 237 VYIVDRSEDWPEALAWAAQQDVPMGVMATDDILTNNQIPDNCEQFSLGE--DIQSASREL 294 Query: 283 FNYMKIAD-DSGASSIAFSSIPNHGLGIAINNRLERAAA 320 F ++ D ++ I + N GLG+A NRL ++A Sbjct: 295 FAGLRHFDTETEIKDILCQAFENKGLGLAYMNRLNKSAG 333 >gi|299782950|gb|ADJ40948.1| Putative uncharacterized protein [Lactobacillus fermentum CECT 5716] Length = 343 Score = 333 bits (854), Expect = 3e-89, Method: Composition-based stats. Identities = 103/332 (31%), Positives = 161/332 (48%), Gaps = 19/332 (5%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I +++A + + AG +A PTETVYGL D+ N A++++Y K RP+ NPLI HVS Sbjct: 6 IFQPAEVKQAAKLIQAGQLVAFPTETVYGLGADATNEEAVKQVYLAKGRPSDNPLIVHVS 65 Query: 66 DISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123 ++MV+ A + + L FWPG LT++L + T + T L T FR P C Sbjct: 66 SLAMVEHFAAEIPAKAKQLMDRFWPGSLTIILRVKPGT-LSKTVTGGLDTVAFRFPDCQT 124 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 T LI G P+ PSAN SG+ S T H+ + +I IID G +++G+EST++++ Sbjct: 125 TLDLISQAGVPIVGPSANTSGKPSPTTANHVY-HDLNNKIAGIIDNGPTRVGVESTVLDM 183 Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241 + V ILRPG + + ++ I + V + P++PGM HYAP +QV + Sbjct: 184 STSQPV-ILRPGAVTKQDIEGVIGSIDINHHQVKQDEVPKAPGMKYKHYAPNAQVYIVDP 242 Query: 242 HVNPREALIRFG----NVPIKNIENAIISLNLSKTGK-------LKEAAFNLFNYMKIAD 290 + E V + + + + S ++EA+ + F ++ D Sbjct: 243 ADDWGEVAAVIAQSKEQVGLMATDQVLHAHVWSVQADQFSLGTGVQEASAHFFEGLRDFD 302 Query: 291 -DSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 I GLG A NRL ++A Sbjct: 303 NQEEIHQIFCQGFEPTGLGAAYMNRLNKSAGG 334 >gi|304438783|ref|ZP_07398711.1| Sua5/YciO/YrdC/YwlC family protein [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372785|gb|EFM26363.1| Sua5/YciO/YrdC/YwlC family protein [Peptoniphilus duerdenii ATCC BAA-1640] Length = 354 Score = 333 bits (854), Expect = 3e-89, Method: Composition-based stats. Identities = 104/343 (30%), Positives = 165/343 (48%), Gaps = 27/343 (7%) Query: 2 QIMSITDS---NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58 +I+ I + +++ L G + PTETVYGL + N A++ +Y K RP+ N Sbjct: 4 KIIKIENEFEREKIKEVASALRDGKLVVFPTETVYGLGGNGLNEDALKNIYVAKGRPSDN 63 Query: 59 PLICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 PLI H++D+ M+ P L FWPGPLTL+ + S + +T L T Sbjct: 64 PLILHIADLDMLDTLVRDIPKDAKLLIDKFWPGPLTLIFNRKSI--VPDRATGGLDTVAI 121 Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P +++ P+A PSAN SG+ S T+ H++ + + I+D S +G+ Sbjct: 122 RMPSDKVAHAILKEAKVPVAAPSANLSGKPSPTSTAHVI-EDLDGRVDYIVDSTRSFVGI 180 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAI-SVELEYCV---DETSTPQSPGMLKSHYAP 232 EST+V++ + ILRPG + E LK I V + D+ S P+SPG HYAP Sbjct: 181 ESTVVDMTVNPPM-ILRPGYITYEDLKSVIPDVCYDNTTIDKDDKSVPKSPGQKYRHYAP 239 Query: 233 RSQVRLRAIHVN--------------PREALIRFGNVPIKNIENAIISLNLSKTGKLKEA 278 + VN ++ + + +K IE ++ L+L L +A Sbjct: 240 SANCYTYVGDVNLVRDKIKEEINKNKDKKICVIATDRVLKEIEEDVLKLSLGSGEDLLDA 299 Query: 279 AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 + NLF +++ADD+ I GLG+ I NRL +A++ Sbjct: 300 SHNLFYNLRVADDNDVDIIFCEGFEQVGLGVGIMNRLTKASSG 342 >gi|218532361|ref|YP_002423177.1| Sua5/YciO/YrdC/YwlC family protein [Methylobacterium chloromethanicum CM4] gi|218524664|gb|ACK85249.1| Sua5/YciO/YrdC/YwlC family protein [Methylobacterium chloromethanicum CM4] Length = 329 Score = 332 bits (853), Expect = 3e-89, Method: Composition-based stats. Identities = 127/299 (42%), Positives = 171/299 (57%), Gaps = 3/299 (1%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 +A+PTETVYGL D+ +P A+ +Y K RP NPLI HV+ D +L LA Sbjct: 33 VALPTETVYGLGADATDPEAVAAIYAAKGRPRFNPLIAHVATPEAALAEGVFDEAALRLA 92 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRS 143 K FWPGPLTLV+ + L+ A L + RVP + L+E G P+A PSANRS Sbjct: 93 KKFWPGPLTLVVPAAPDCSVCDLARAGLDSVALRVPAHDIARALLERVGRPVAAPSANRS 152 Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203 G++S T+ H+L+ + I ++DGG +G+EST+V R+LRPGG+ E L Sbjct: 153 GRVSPTSADHVLTD-LDGRIAAVLDGGECPVGVESTVVACLG-GPPRLLRPGGVTREALA 210 Query: 204 RAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENA 263 + E D S P PG+L SHYAPR+ VRL A + P EA++ FG +++A Sbjct: 211 AVLGFAPEAAGDPGSRPVGPGLLASHYAPRAGVRLEARIIEPSEAVLLFGAFRPAGLDHA 270 Query: 264 IISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 +LS+ G EAA LF ++ D SGA +IA +P GLG AIN+RL RAAAPR Sbjct: 271 AAVESLSERGDPAEAAARLFGALRRLDASGAPTIAVVPVPEEGLGEAINDRLRRAAAPR 329 >gi|312871989|ref|ZP_07732071.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LEAF 2062A-h1] gi|311092566|gb|EFQ50928.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LEAF 2062A-h1] Length = 331 Score = 332 bits (853), Expect = 4e-89, Method: Composition-based stats. Identities = 107/326 (32%), Positives = 169/326 (51%), Gaps = 14/326 (4%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I + + +++A + L G +A PTETVYGL D+ N A++ +Y K RP+ NPLI V+ Sbjct: 5 IFNKDNIKQAAQLLAQGELVAFPTETVYGLGADATNEEAVKNVYRAKGRPSDNPLIVTVA 64 Query: 66 DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123 D +M+KK+ + + L FWPGPLTL+L + T + T L TA FR P Sbjct: 65 DEAMMKKYVTEIPADAQKLIDHFWPGPLTLILFVKEGT-LPDAVTGGLPTAAFRCPQDPL 123 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 T +LI+T P+ PSAN S + S T +H+ + +I IID G +KIGLESTI+++ Sbjct: 124 TNELIQTLTRPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDNGPTKIGLESTIIDL 182 Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 ++ V +LRPG + + L + ++ + V P++PGM HYAP S V + Sbjct: 183 SVDQPV-VLRPGEITPDELSEVLDKKVLLNKGTVQTKDVPKAPGMKYRHYAPSSPVYIVD 241 Query: 241 IHVN----PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD-DSGAS 295 + P ++ + + N+ + + + S + EAA NLF ++ D + Sbjct: 242 DPADFAYIPHDSSVGVAALA-DNLHDLGDADSFSLGVSIDEAAHNLFGALRYFDSNEQIK 300 Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321 +I + A NRL +AA+ Sbjct: 301 TIYVQGFAKGNISAAYMNRLNKAASG 326 >gi|304321289|ref|YP_003854932.1| Sua5/YciO/YrdC family protein [Parvularcula bermudensis HTCC2503] gi|303300191|gb|ADM09790.1| Sua5/YciO/YrdC family protein [Parvularcula bermudensis HTCC2503] Length = 308 Score = 332 bits (853), Expect = 4e-89, Method: Composition-based stats. Identities = 132/314 (42%), Positives = 176/314 (56%), Gaps = 15/314 (4%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 ++ KA E L +G + +PTETVYGLA D+ AI RLYEIK RP NPLI HV D Sbjct: 9 SIDKAAEQLRSGGLVGLPTETVYGLAADATQGEAIARLYEIKGRPHFNPLIVHVLDRRDA 68 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129 ++P + L FWPGPLTLVL + ++ A L T R P + L+ Sbjct: 69 AHITEMEPRADQLISRFWPGPLTLVLPSKRGGPVADIALAGLDTVAIRAPLHPVARALLA 128 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 +G P+ PSANRSG+IS T H+++ +IP ++DGG +GLESTIV + E+ Sbjct: 129 VFGGPIVAPSANRSGRISPTIAGHVVAE-FGTDIP-VLDGGPCTVGLESTIVGLTGERP- 185 Query: 190 RILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREAL 249 +LRPGG+ + ++ + E + +PGM+ SHYAP + VRL A E L Sbjct: 186 TLLRPGGITAQQIEEILG---EPLAEPGGGIDAPGMMASHYAPDAAVRLDAKAATEDEVL 242 Query: 250 IRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGI 309 + FG P +L+LS +G L EAA NLF +M+ D G IA + IP GLG Sbjct: 243 LGFGGTP-------GATLDLSPSGDLIEAAANLFAHMRELDRHG-RPIAVAPIPEDGLGK 294 Query: 310 AINNRLERAAAPRN 323 AIN+RL RAAAPRN Sbjct: 295 AINDRLRRAAAPRN 308 >gi|300361414|ref|ZP_07057591.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus gasseri JV-V03] gi|300354033|gb|EFJ69904.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus gasseri JV-V03] Length = 334 Score = 332 bits (853), Expect = 4e-89, Method: Composition-based stats. Identities = 110/330 (33%), Positives = 162/330 (49%), Gaps = 13/330 (3%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ I + +A E L G +A PTETVYGL + N A++ +Y K RP+ NPL Sbjct: 5 MET-KIFSKKQIPEAVELLKKGELVAFPTETVYGLGALATNEKAVKGVYAAKGRPSDNPL 63 Query: 61 ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I VSD M++ + V + L K FWPGPLT++L + T + T L TA FR Sbjct: 64 IVTVSDEKMMENYVNEVPERAKKLIKHFWPGPLTIILFVKEGT-LPDAVTGGLPTAAFRC 122 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T LI G P+ PSAN S + S T +H+ + +I IID G ++IGLES Sbjct: 123 PDDEMTHDLISELGKPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDNGPTEIGLES 181 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQ 235 TIV++ E +LRPG + E + + + E+ + P++PGM HYAP + Sbjct: 182 TIVDLSVETP-TVLRPGEITPEEISKVLGEEVLMNKGTTKTKGVPKAPGMKYRHYAPSAP 240 Query: 236 VRLRAIHVNPREALIR--FGNVPIKNIENAIISLNLSKTGK-LKEAAFNLFNYMKIAD-D 291 V + + + G + + + I S N GK + +AA NLF ++ D + Sbjct: 241 VFIVDKEADFSKIKWDKETGVAALDEVLDKIDSSNKYSLGKTIDKAAHNLFGALRYFDSE 300 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAAP 321 + I + + A NRL +AAA Sbjct: 301 NNIKRIYVQGFDHGAISPAYMNRLNKAAAG 330 >gi|154482619|ref|ZP_02025067.1| hypothetical protein EUBVEN_00286 [Eubacterium ventriosum ATCC 27560] gi|149736519|gb|EDM52405.1| hypothetical protein EUBVEN_00286 [Eubacterium ventriosum ATCC 27560] Length = 359 Score = 332 bits (853), Expect = 4e-89, Method: Composition-based stats. Identities = 104/345 (30%), Positives = 161/345 (46%), Gaps = 31/345 (8%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 + D + + +A E + G +A PTETVYGL D+ N A ++Y K RP+ NPLI H Sbjct: 14 VDNIDMDTINQAGEIIRQGGLVAFPTETVYGLGADALNEEAAAKIYAAKGRPSDNPLIAH 73 Query: 64 VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 ++D+ M+K + P++ L FWPGP+TL+ + + + +T L T R P Sbjct: 74 IADLEMLKPLVEEIPPVAEKLMDAFWPGPMTLIFN--KSNLVPKGTTGGLDTVAVRYPNH 131 Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 + LI+ G +A PSAN SG+ S T +H++ + I +IIDGG+ +GLESTI+ Sbjct: 132 PIAQALIKAAGVSIAAPSANLSGKPSPTLGEHVI-DDMDGRIDMIIDGGMVGMGLESTII 190 Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCV-----DETSTPQSPGMLKSHYAPRSQV 236 +V + ILRPG + E +K + E + P++PGM HYAP + Sbjct: 191 DVTVNPPM-ILRPGFITYEMVKEIVPDATEDRTIFTKPTKEFKPKAPGMKYRHYAPSADY 249 Query: 237 RLRA-IHVNPREALIRFGNVPIKN-------------------IENAIISLNLSKTGKLK 276 + V E +I N + +I ++L K + Sbjct: 250 TIYKGDEVKVAEKIIELANEKADEGKITGIITADQHLHMYQGRLNKSIKVVSLGDLEKPE 309 Query: 277 EAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 A +LF ++ D I + +G AI NRL +AA Sbjct: 310 TVANHLFKALRDFDKVDTEFIFGEAFSEKNVGQAIMNRLTKAAGY 354 >gi|240140923|ref|YP_002965403.1| hypothetical protein MexAM1_META1p4495 [Methylobacterium extorquens AM1] gi|240010900|gb|ACS42126.1| conserved hypothetical protein with Sua5/YciO/YrdC domain [Methylobacterium extorquens AM1] Length = 329 Score = 332 bits (852), Expect = 4e-89, Method: Composition-based stats. Identities = 127/299 (42%), Positives = 170/299 (56%), Gaps = 3/299 (1%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 +A+PTETVYGL D+ +P A+ +Y K RP NPLI HV+ D +L LA Sbjct: 33 VALPTETVYGLGADATDPEAVAAIYAAKGRPRFNPLIAHVATPEAALAEGVFDEAALRLA 92 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRS 143 K FWPGPLTLV+ + L+ A L + RVP + L+E G P+A PSANRS Sbjct: 93 KKFWPGPLTLVVPAAPGGSVCDLARAGLDSVALRVPAHDIARALLERVGRPVAAPSANRS 152 Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203 G++S T+ H+L+ + I ++DGG +G+EST+V ++LRPGG+ E L Sbjct: 153 GRVSPTSADHVLTD-LDGRIAAVLDGGECPVGVESTVVACLG-GPPQLLRPGGVTREALA 210 Query: 204 RAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENA 263 + E D S P PG+L SHYAPR+ VRL A V P EA++ FG ++ A Sbjct: 211 AVLGFAPEAASDPGSRPVGPGLLASHYAPRAGVRLEARTVEPSEAVLLFGAFRPAGLDRA 270 Query: 264 IISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 +LS+ G EAA LF ++ D SGA +IA +P GLG AIN+RL RAAAPR Sbjct: 271 AAVESLSERGDAAEAAARLFGALRRLDASGAPTIAVVPVPEEGLGEAINDRLRRAAAPR 329 >gi|332637162|ref|ZP_08416025.1| SUA5 family translation factor [Weissella cibaria KACC 11862] Length = 342 Score = 332 bits (852), Expect = 5e-89, Method: Composition-based stats. Identities = 103/343 (30%), Positives = 163/343 (47%), Gaps = 18/343 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I ++ L A + G +A PTETVYGL D+ N A+ ++Y K RP+ NPL Sbjct: 1 MAETKIWSADELPAAVRAIKRGSLVAFPTETVYGLGADAFNEKAVSKVYAAKGRPSDNPL 60 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 I HV+D + V + A V+ + L FWPGPLT++L + T + T L T R+P Sbjct: 61 IVHVADKAQVDRFAVVNAWAEKLMDAFWPGPLTMILPVKPGT-VSTTVTGGLDTVAARMP 119 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 T+ LI P+ PSAN SG+ S T +H+ + +I I+D G +KIG+EST Sbjct: 120 DNDVTRALIREADAPMVGPSANTSGKPSPTTAQHVY-HDLHGKISGILDDGATKIGVEST 178 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELE---YCVDETSTPQSPGMLKSHYAPRSQV 236 ++++ + +LRPG + ++ + V ++ VD P++PGM HYAP V Sbjct: 179 VIDLSTDTPA-VLRPGKITPAQIEAVLGVPVDSEIKHVDADEAPKAPGMKYRHYAPDKDV 237 Query: 237 RLRAIHVN----------PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYM 286 + A + N I + A + S AA LF + Sbjct: 238 YMVAPEDWTQAIIWAQSQLEPVGLMLTNDLIVQHQLAGMDFVWSLGDNGDTAAAKLFAGL 297 Query: 287 KIADD-SGASSIAFSSIPNHGLGIAINNRLERAAAPRNQSQRI 328 + DD ++ +++PN A NNRL +++ ++ + Sbjct: 298 RHFDDRKDVLTVLVAAMPNTPENSAYNNRLGKSSGGHWVTELL 340 >gi|163814228|ref|ZP_02205619.1| hypothetical protein COPEUT_00381 [Coprococcus eutactus ATCC 27759] gi|158450473|gb|EDP27468.1| hypothetical protein COPEUT_00381 [Coprococcus eutactus ATCC 27759] Length = 350 Score = 332 bits (852), Expect = 5e-89, Method: Composition-based stats. Identities = 108/341 (31%), Positives = 164/341 (48%), Gaps = 28/341 (8%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + D + +A E L +G +A PTETVYGL D+ NP A ++Y K RP+ NPLI H++ Sbjct: 10 VDDEHMYEQAAEILRSGGLVAFPTETVYGLGGDALNPDASHKIYSAKGRPSDNPLIVHIA 69 Query: 66 DISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 D V + A V + L + FWPGPLT++L+ + +T L T R+P Sbjct: 70 DTDSVYELAEYVSDDTKKLMEAFWPGPLTIILN--KKAVVPHTTTGGLDTVAIRMPSHPV 127 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 KLI+ G +A PSAN SG+ S T H+ + I +IIDGG IG+ESTIV++ Sbjct: 128 AMKLIKDSGVYIAAPSANLSGRPSPTTAHHV-QQDMDGRIDMIIDGGAVGIGIESTIVDM 186 Query: 184 QCEKKVRILRPGGLEIETLKRAIS-VELEYCV---DETSTPQSPGMLKSHYAPRSQVRLR 239 ++ ILRPG + E +K + V ++ + + P++PGM +HYAP+ ++ + Sbjct: 187 TGDRP-TILRPGYITPEMIKNIVGDVTIDPAITGMNNALRPKAPGMKYTHYAPKGELSIV 245 Query: 240 AIHVNPREALIR--FGNVPIKNIENAIIS----------------LNLSKTGKLKEAAFN 281 IR + + AI+ + + Sbjct: 246 EGERLVAAERIRSLVAEKRAQGYKTAILCDTENVGLYNDGVCENIYDAGSKKNEITVSAG 305 Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 L++ ++ DD GA I S +G AI NRL +AA R Sbjct: 306 LYSLLRTCDDIGAQYIYSESFEEGDMGYAIMNRLIKAAGHR 346 >gi|295425484|ref|ZP_06818177.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus amylolyticus DSM 11664] gi|295064823|gb|EFG55738.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus amylolyticus DSM 11664] Length = 337 Score = 332 bits (852), Expect = 5e-89, Method: Composition-based stats. Identities = 105/333 (31%), Positives = 163/333 (48%), Gaps = 17/333 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ I + A + L G +A PTETVYGL + N +++ +Y K RP+ NPL Sbjct: 5 MET-RIFSEEQIDDAVKLLAKGELVAFPTETVYGLGAIATNEKSVKGVYAAKGRPSDNPL 63 Query: 61 ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I VSD M++++A V + L K FWPGPLT++L + + + T L T FR Sbjct: 64 IVTVSDEDMMRRYAKEVPERAEKLIKHFWPGPLTILLFVKPGS-LPDAVTGGLDTVAFRC 122 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T LI+ G+P+ PSAN S + S T +H+ + +I IIDGG +++GLES Sbjct: 123 PDDKLTHTLIKKLGYPIVGPSANTSTKPSPTTAQHVY-HDLKGKIAGIIDGGPTRVGLES 181 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQ 235 TI+++ + + +LRPG + E L + ++ V + P++PGM HYAP + Sbjct: 182 TIIDLSVKTPI-VLRPGEITPEELSEVLGEKVLINTGKVSDKEIPKAPGMKYRHYAPSAP 240 Query: 236 VRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTG------KLKEAAFNLFNYMKIA 289 V + H + N + +N + ++L + L +A NLF ++ Sbjct: 241 V-MVIDHPEDFAKIDLNENTGVMATKNVLAKIDLPQENKFNLGDDLIQADHNLFGGLRYF 299 Query: 290 DD-SGASSIAFSSIPNHGLGIAINNRLERAAAP 321 DD I +A NRL +AAA Sbjct: 300 DDKKNIHQIYVEGFDEGEASLAYMNRLNKAAAG 332 >gi|160894646|ref|ZP_02075421.1| hypothetical protein CLOL250_02197 [Clostridium sp. L2-50] gi|156863580|gb|EDO57011.1| hypothetical protein CLOL250_02197 [Clostridium sp. L2-50] Length = 359 Score = 332 bits (852), Expect = 5e-89, Method: Composition-based stats. Identities = 110/350 (31%), Positives = 170/350 (48%), Gaps = 29/350 (8%) Query: 1 MQIM----SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56 M+ + + + RKA + L +G +A PTETVYGL D+ NP A ++Y K RP+ Sbjct: 13 MKTIVAKADLENEELFRKASDILKSGGLVAFPTETVYGLGGDALNPKASEKIYSAKGRPS 72 Query: 57 MNPLICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115 NPLI H++D + V + A V + L + FWPGPLT++ + +T L+T Sbjct: 73 DNPLIVHIADTASVWELVAEVSTQAQMLMEAFWPGPLTIIF--KKKDIVPHETTGGLETV 130 Query: 116 CFRVPCGFTK-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174 R+P KLI+ G +A PSAN SG+ S T H+ + I +I+DGG I Sbjct: 131 AIRMPSHPAAMKLIKDSGVYIAAPSANLSGRPSPTTAAHV-EEDLSGRIDMILDGGPVGI 189 Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYC---VDETSTPQSPGMLKSHY 230 G+ESTIV+V ++ ILRPG + + +K + V ++ VD P++PGM +HY Sbjct: 190 GIESTIVDVTGDRP-TILRPGYISADMIKNILGDVMIDPALESVDMKVRPKAPGMKYTHY 248 Query: 231 APRSQVRLRAIHVNPREALIR--FGNVPIKNIENAII-------------SLNLSKTGKL 275 AP+ ++ + A I + + A++ L+ Sbjct: 249 APKGKLTIVEGEREKVAAKIAELVACKQAEGYKTAVLCDTENTDLYSCENVLDAGSKKNE 308 Query: 276 KEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325 + +L+ +++ DD GA I S +G AI NRL +AA R S Sbjct: 309 ITVSSSLYRLLRLCDDIGADYIYSESFREGDMGYAIMNRLIKAAGHRIIS 358 >gi|254293530|ref|YP_003059553.1| Sua5/YciO/YrdC/YwlC family protein [Hirschia baltica ATCC 49814] gi|254042061|gb|ACT58856.1| Sua5/YciO/YrdC/YwlC family protein [Hirschia baltica ATCC 49814] Length = 309 Score = 332 bits (852), Expect = 5e-89, Method: Composition-based stats. Identities = 127/318 (39%), Positives = 178/318 (55%), Gaps = 14/318 (4%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 I+ + + +A + + G +AIPTETVYGLA D+ N A+ R+Y K RP+ NPLI Sbjct: 4 IIQSPSHDTMEQAAQIIRDGGIVAIPTETVYGLAADATNGEAVARIYAAKGRPSFNPLIS 63 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 HV+D+ M ++ A+ P +L L + FWPGPLTLVL + L+TA L T R P Sbjct: 64 HVNDMEMAEELANFSPAALELVEKFWPGPLTLVLPKTKYCPVSALATAGLDTIALRAPRH 123 Query: 123 FTKK-LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 + LI PLA PSAN S +S T +H+ + + + LI+DGG K G+EST+V Sbjct: 124 IVARGLIAAARCPLAAPSANPSEALSPTTAQHV-ADMLSGNVDLILDGGPCKTGVESTVV 182 Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241 +V E+ +LRPG L ++ + SPGM++ HYAP +++RL AI Sbjct: 183 SVVGERPA-LLRPGALPRAEIEAITG----PLDAPSEKIASPGMMRRHYAPNAKLRLDAI 237 Query: 242 HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSS 301 EA + FG K ++ NLS +G L EAA NLF ++I D IA + Sbjct: 238 SPEKGEAYLGFGPSKHK------VAANLSTSGDLLEAAANLFAMLRILD-LQYDRIAIAP 290 Query: 302 IPNHGLGIAINNRLERAA 319 IP+ GLG AIN+RL+RAA Sbjct: 291 IPHEGLGEAINDRLKRAA 308 >gi|164688897|ref|ZP_02212925.1| hypothetical protein CLOBAR_02545 [Clostridium bartlettii DSM 16795] gi|164602101|gb|EDQ95566.1| hypothetical protein CLOBAR_02545 [Clostridium bartlettii DSM 16795] Length = 346 Score = 332 bits (852), Expect = 5e-89, Method: Composition-based stats. Identities = 100/337 (29%), Positives = 164/337 (48%), Gaps = 22/337 (6%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 + D ++K E L AG + PTETVYGL ++ + A+ ++Y+ K RP+ NPLI H Sbjct: 10 VDNIDMEEIKKQAEILRAGETVIFPTETVYGLGANALDEEAVSKIYKAKGRPSDNPLIVH 69 Query: 64 VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 + D V SV + + FWPGP+T++L+ I ++ L T R+P Sbjct: 70 IGDKKQVYNLVQSVTKEAEIVMDKFWPGPITIILN--KKDIIPKRTSGGLDTVAIRMPSN 127 Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 LI+ P+A PSAN SG+ S T KH+ + + II G GLEST++ Sbjct: 128 KIANALIKEANIPIAAPSANISGRPSPTRAKHVY-EEMNHRVSGIIMGNDCVYGLESTVL 186 Query: 182 NVQCEKKVRILRPGGLEIETLKRAIS-VELEYCVDETS---TPQSPGMLKSHYAPRSQVR 237 ++ E ILRPG + E L++ + V+L+ +++ ++PGM +HY+P ++V Sbjct: 187 DLTGEIP-TILRPGSITKEQLEKELGNVQLDAALEKKEDNIKAKAPGMKYTHYSPNAEVY 245 Query: 238 LRAIHV------------NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNY 285 + + + ++ + +K E I + L++ A NLF+ Sbjct: 246 IVSGEQTNVIDKINTLIEENNDKNLKTCVICLKCNEKQYIGKTICLGETLEDVASNLFDA 305 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 + AD+ I S N G+G AI NRL ++A + Sbjct: 306 LIQADEEKCDIIYSESFTNEGIGCAIMNRLLKSAGYK 342 >gi|299143533|ref|ZP_07036613.1| Sua5/YciO/YrdC/YwlC family protein [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518018|gb|EFI41757.1| Sua5/YciO/YrdC/YwlC family protein [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 349 Score = 332 bits (851), Expect = 5e-89, Method: Composition-based stats. Identities = 97/346 (28%), Positives = 166/346 (47%), Gaps = 30/346 (8%) Query: 2 QIMSITDSNALR-----KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56 +++ I D++ ++ + L G + PTETVYGL + + TA + ++ K RP Sbjct: 4 KVIKI-DADNIKRENITEITNALKNGKLVVFPTETVYGLGANGLDETACKNIFNAKGRPG 62 Query: 57 MNPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115 NPLI H+++IS + V + L +FWPGPLT++ ++ I + +A L T Sbjct: 63 DNPLILHIAEISQLDDLVEDVSESARDLIDMFWPGPLTMIF--KKSSKIPDVVSAGLDTV 120 Query: 116 CFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174 R+P +++++ P+A PSAN SG+ S T+ K + + ++ +I+DGG + + Sbjct: 121 AVRMPSHKIAREILKDCMIPIAAPSANLSGKPSPTSFKRVF-EDLDNKVDIIVDGGRADV 179 Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV----DETSTPQSPGMLKSHY 230 G+EST+V++ + ILRPG + E LK I + P+SPG HY Sbjct: 180 GIESTVVDMTVNPPM-ILRPGKVTTEDLKIIIPDIKIDSATIDSSDGKIPKSPGQKYKHY 238 Query: 231 APRSQVRLRAIHVN----------PREALIRFGNVPIKNIENAIIS----LNLSKTGKLK 276 APR++ +++ ++ G + + ++ I +NL + Sbjct: 239 APRAEAYCFVGNLDNVVKEINKRISENKNLKIGVLATEETKDYYIGAHILINLGSRENMS 298 Query: 277 EAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 E A NLF ++ DD I G+G+ I NRL +A R Sbjct: 299 EIASNLFEALRECDDEKVDYIYTEGFELRGIGVGIMNRLLKACGGR 344 >gi|259415145|ref|ZP_05739067.1| translation factor SUA5 [Silicibacter sp. TrichCH4B] gi|259349055|gb|EEW60809.1| translation factor SUA5 [Silicibacter sp. TrichCH4B] Length = 319 Score = 332 bits (851), Expect = 6e-89, Method: Composition-based stats. Identities = 130/317 (41%), Positives = 174/317 (54%), Gaps = 13/317 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A E L AG +A PTETVYGL D+ N A+ +Y K RP+ NPLI HV+D++ Sbjct: 15 PEGIARAAELLAAGQLVAFPTETVYGLGADATNGAAVAAIYATKGRPSFNPLIAHVADVA 74 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 + + + +A FWPGPLTLVL L + PL TA L T RVP + L Sbjct: 75 AAQTLVQWNEWAEAMAAAFWPGPLTLVLPLRPDHPVSPLVTAGLDTLAVRVPAKACARDL 134 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + P+A PSAN SG+IS T H+ + + +I I+D G +G+ESTI+ + + Sbjct: 135 LAAVARPIAAPSANPSGRISPTTAAHV-RAGLGGKIAAILDDGPCGVGVESTILGLAGDA 193 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 V +LRPGGL E ++ A+ L + +PG L+SHYAP + VRL A P E Sbjct: 194 PV-LLRPGGLAAEDIEAALGCPLAE-RNAADPLTAPGQLQSHYAPNASVRLAARDFAPGE 251 Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307 + FG LNLS +G L EAA NLF Y+ D IA + +P HGL Sbjct: 252 VSLGFGP--------GAFDLNLSPSGDLNEAAANLFGYLHQLDAME-RPIAVAPVPEHGL 302 Query: 308 GIAINNRLERAAAPRNQ 324 GIAIN+RL RAAAPR+ Sbjct: 303 GIAINDRLRRAAAPRDS 319 >gi|227486773|ref|ZP_03917089.1| Sua5/YciO/YrdC/YwlC family protein [Anaerococcus lactolyticus ATCC 51172] gi|227235243|gb|EEI85258.1| Sua5/YciO/YrdC/YwlC family protein [Anaerococcus lactolyticus ATCC 51172] Length = 344 Score = 332 bits (851), Expect = 6e-89, Method: Composition-based stats. Identities = 110/340 (32%), Positives = 168/340 (49%), Gaps = 24/340 (7%) Query: 2 QIMSI----TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 +I+ I D++A++KA F+ +G +A PTETVYGL D N A R++++ K RP+ Sbjct: 4 EILKIDRENIDTDAIKKAANFIKSGQLVAFPTETVYGLGADGINDEACRKIFKAKGRPSD 63 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 NPLI H+S ISM+ WPGP+TL+ + I TA T Sbjct: 64 NPLILHISHISMLDNLVEEITDKHRKLFELWPGPMTLIF--KKSKSIPDAVTAGGDTVAI 121 Query: 118 RVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R P + LI P+A PSAN SG+ S TN + + IP+IIDGG S IG+ Sbjct: 122 RFPSDQIARALITEADTPIAAPSANISGRPSPTNASDVY-QDMDGIIPVIIDGGESNIGI 180 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAIS--VELEYCVDETSTPQSPGMLKSHYAPRS 234 EST++++ ++ + ILRPG E LK +S + VD + P+SPG HYAP++ Sbjct: 181 ESTVIDLSGDEPI-ILRPGFYTYEFLKDILSDMRLDDSLVDSSKIPKSPGQKYKHYAPKA 239 Query: 235 QVRLRAIHVNPREALI----------RFGNVPIKNIE---NAIISLNLSKTGKLKEAAFN 281 ++R+ P L + G + + + N+ ++L L + Sbjct: 240 KLRVFIGEDVPTHLLSEAEKYKSDGKKVGILAFEEDKEKFNSYPYISLGSRKDLSTMSHV 299 Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 LF+ ++ D G I + LG +I NR+++AAA Sbjct: 300 LFSSLREMDRLGVDLILAEGVKEKHLGKSIMNRMKKAAAN 339 >gi|118589276|ref|ZP_01546682.1| Sua5/YciO/YrdC/YwlC protein family:SUA5 domain protein [Stappia aggregata IAM 12614] gi|118437976|gb|EAV44611.1| Sua5/YciO/YrdC/YwlC protein family:SUA5 domain protein [Stappia aggregata IAM 12614] Length = 331 Score = 332 bits (851), Expect = 6e-89, Method: Composition-based stats. Identities = 140/329 (42%), Positives = 186/329 (56%), Gaps = 10/329 (3%) Query: 3 IMSITDSN-----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 + I D+N C L AG +A+PTETVYGLA D+ N TA +++ K RP Sbjct: 5 TLDIADANWQAAPEADAVCAALMAGELVAVPTETVYGLAADATNGTACAKIFAAKGRPQF 64 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 NPLI HV + H D +L LA+ FWPGPLTLV+ + + I L+TA L+T Sbjct: 65 NPLISHVQTLGAALDHGVFDERALALAEAFWPGPLTLVVPKRAGSPISDLATAGLQTVAL 124 Query: 118 RVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 RVP + L E G PLA PSANRSG+IS T + ++ + + + +ID G +G+ Sbjct: 125 RVPVGPVMRFLAEKTGRPLAAPSANRSGKISPTRAEDVV-ADLGPSLSFVIDAGACAVGI 183 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDE--TSTPQSPGMLKSHYAPRS 234 ESTIV + + R+LRPGGL E ++R + LE + P +PGML SHYAP + Sbjct: 184 ESTIVGL-VDGTPRLLRPGGLAREDIERVLGQPLEGASPDMRPDAPAAPGMLTSHYAPDA 242 Query: 235 QVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGA 294 + L A V+ + L+ FG + E A NLS TG L EAA NLF M+ D G Sbjct: 243 AMLLNASEVSAGDGLLSFGTNRLPGAELAKAEFNLSPTGGLAEAAANLFRAMRFLDAQGV 302 Query: 295 SSIAFSSIPNHGLGIAINNRLERAAAPRN 323 S+I IP+ GLG AIN+RL RAAAPR+ Sbjct: 303 STIKVQFIPSFGLGEAINDRLRRAAAPRD 331 >gi|28378948|ref|NP_785840.1| SUA5 family translation factor [Lactobacillus plantarum WCFS1] gi|300766723|ref|ZP_07076640.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308181158|ref|YP_003925286.1| SUA5 family translation factor [Lactobacillus plantarum subsp. plantarum ST-III] gi|28271785|emb|CAD64691.1| SUA5 family translation factor (putative) [Lactobacillus plantarum WCFS1] gi|300495823|gb|EFK30974.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308046649|gb|ADN99192.1| SUA5 family translation factor [Lactobacillus plantarum subsp. plantarum ST-III] Length = 339 Score = 332 bits (851), Expect = 6e-89, Method: Composition-based stats. Identities = 110/337 (32%), Positives = 170/337 (50%), Gaps = 21/337 (6%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ + + A L AG +A PTETVYGL D+ N A++++Y K RP+ NPL Sbjct: 1 MET-KVYTPAEIPAAAALLTAGQLVAFPTETVYGLGADATNVDAVKQVYLAKGRPSDNPL 59 Query: 61 ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I HV+D+ V++ A + + L K FWPGPLT++ L + P T L+TA FR Sbjct: 60 IVHVADVETVERFAQPLSEAAKKLIKAFWPGPLTMIFKLKPDA-LAPEVTGGLQTAAFRN 118 Query: 120 PCGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P LI G P+ PSAN SG+ S T +H+L + +I I+D G +K+G+ES Sbjct: 119 PDNEATLALIRAAGTPIVGPSANTSGKPSPTTAQHVL-HDLRGKIAGILDDGPTKVGVES 177 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELE---YCVDETSTPQSPGMLKSHYAPRSQ 235 T++++ +K ILRPG + E ++R I + ++ + V P++PGM HYAP +Q Sbjct: 178 TVLDLSTDKPA-ILRPGAVTPEAIERVIGMPVQTELHHVGAKEVPKAPGMKYKHYAPNAQ 236 Query: 236 VRLRAIHVNPREALIRFGNVPIK-----------NIENAIISLNLSKTGKLKEAAFNLFN 284 V + + EAL + N + S ++ A+ LF Sbjct: 237 VYIVDRSEDWPEALAWAAQQDVPMGVMATDDILTNNQIPANCEQFSLGEDIQSASRELFA 296 Query: 285 YMKIAD-DSGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ D ++ I + N GLG+A NRL ++A Sbjct: 297 GLRHFDTETEIKDILCQAFENKGLGLAYMNRLNKSAG 333 >gi|298294372|ref|YP_003696311.1| Sua5/YciO/YrdC/YwlC family protein [Starkeya novella DSM 506] gi|296930883|gb|ADH91692.1| Sua5/YciO/YrdC/YwlC family protein [Starkeya novella DSM 506] Length = 335 Score = 332 bits (851), Expect = 6e-89, Method: Composition-based stats. Identities = 139/314 (44%), Positives = 183/314 (58%), Gaps = 11/314 (3%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 L G +A+PTETVYGLA D+ +P A+ LY K RP+ NPLI HV DI ++ + Sbjct: 25 RVLKVGGLVALPTETVYGLACDATDPHAVAGLYAAKGRPSFNPLIAHVPDIDAARRVGHL 84 Query: 77 DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPL 135 P + LA+ FWPGPLTLV+ + L+ A L + RVP + ++ G P+ Sbjct: 85 TPAAETLARRFWPGPLTLVVPAIEGAT-SELARAGLSSVAIRVPAHPVAQAVLRAAGRPI 143 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 A PSANRSG +S T+ H+ S+ + I LI+D G S +G+ESTI++ E V +LRPG Sbjct: 144 AAPSANRSGHVSPTSAAHV-SADLDGRIDLILDAGASAVGVESTILDCTGEVPV-MLRPG 201 Query: 196 GLEIETLKRAISVELEYC-------VDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248 GL E +K A+ L + P +PGML SHYAP VRLRA V P EA Sbjct: 202 GLPREAIKEALGAPLASPAPRVVEEAEAGEAPLAPGMLASHYAPTIPVRLRAREVKPGEA 261 Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLG 308 L+ F E A+ L+LS TG L EAA NLF +++ D SGA +IA ++P HGLG Sbjct: 262 LLTFAGAQPPGAEQAVARLDLSPTGDLVEAAANLFAHLRALDSSGAIAIAVVALPRHGLG 321 Query: 309 IAINNRLERAAAPR 322 AI +RL RAAAPR Sbjct: 322 EAIADRLRRAAAPR 335 >gi|229917062|ref|YP_002885708.1| Sua5/YciO/YrdC/YwlC family protein [Exiguobacterium sp. AT1b] gi|229468491|gb|ACQ70263.1| Sua5/YciO/YrdC/YwlC family protein [Exiguobacterium sp. AT1b] Length = 336 Score = 332 bits (851), Expect = 6e-89, Method: Composition-based stats. Identities = 113/335 (33%), Positives = 177/335 (52%), Gaps = 20/335 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ +SN + + L AG IA+PTETVYGLA D+ N AIR+++E K RP+ NPL Sbjct: 1 MET-KWINSNEIEEGVRLLQAGEIIAMPTETVYGLAGDAMNDVAIRKIFEAKGRPSDNPL 59 Query: 61 ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I H++ I + P++ L FWPG LT++L S L TA L + R+ Sbjct: 60 IVHIASIEQTSLFVDSIPPVAKRLMDAFWPGALTIILP--SNGRASSLVTAGLDSIGLRM 117 Query: 120 PCGFTK-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P +LI G LA PSANRSG+ S T +H+ + + I I+DGG + IG+ES Sbjct: 118 PNHPAALELIRKSGLGLAAPSANRSGRPSPTTAQHV-ADDLNGRIAGIVDGGPTGIGVES 176 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPRSQV 236 T+V+ + V ILRPGG+ E ++ I ++ + P+SPGM +HYAP + V Sbjct: 177 TVVDCTGD-TVTILRPGGVTREEMEAVIGPVALDANLSNDEAAPRSPGMKYTHYAPTAPV 235 Query: 237 R--------LRAIHVNPREALIRFGNVPI-KNIENAIISLNLSKTGKLKEAAFNLFNYMK 287 L + ++A +R G + +N A ++ +L ++ AA L++ ++ Sbjct: 236 FLVDGTREDLERVIEERKQAGLRIGALVFDENPTPAEVTYSLGT--SMEVAAQRLYDALR 293 Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 D++ I ++I G+ +A+ NRL +AA + Sbjct: 294 RFDETDVDEIYVNTIEPVGVALAVYNRLYKAAGGK 328 >gi|163853503|ref|YP_001641546.1| Sua5/YciO/YrdC/YwlC family protein [Methylobacterium extorquens PA1] gi|254563432|ref|YP_003070527.1| hypothetical protein METDI5100 [Methylobacterium extorquens DM4] gi|163665108|gb|ABY32475.1| Sua5/YciO/YrdC/YwlC family protein [Methylobacterium extorquens PA1] gi|254270710|emb|CAX26715.1| conserved hypothetical protein, Sua5/YciO/YrdC domain [Methylobacterium extorquens DM4] Length = 329 Score = 331 bits (850), Expect = 7e-89, Method: Composition-based stats. Identities = 127/299 (42%), Positives = 170/299 (56%), Gaps = 3/299 (1%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 +A+PTETVYGL D+ +P A+ +Y K RP NPLI HV+ D +L LA Sbjct: 33 VALPTETVYGLGADATDPEAVAAIYAAKGRPRFNPLIAHVATPEAALAEGVFDEAALRLA 92 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRS 143 K FWPGPLTLV+ + L+ A L + RVP + L+E G P+A PSANRS Sbjct: 93 KEFWPGPLTLVVPAAPGGSVCDLARAGLDSVALRVPAHDIARGLLEQVGRPVAAPSANRS 152 Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203 G++S T+ H+L+ + I ++DGG +G+EST+V R+LRPGG+ E L Sbjct: 153 GRVSPTSADHVLTD-LDGRIAAVLDGGECPVGVESTVVACLG-GPPRLLRPGGVTREALA 210 Query: 204 RAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENA 263 + E D S P PG+L SHYAPR+ VRL A + P EA++ FG ++ A Sbjct: 211 AVLGFAPEAAGDPGSRPVGPGLLASHYAPRAGVRLEARTIEPSEAVLLFGAFRPAGLDRA 270 Query: 264 IISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 +LS+ G EAA LF ++ D SGA +IA +P GLG AIN+RL RAAAPR Sbjct: 271 AAVESLSERGDPAEAAARLFGALRRLDASGAPTIAVVPVPEEGLGEAINDRLRRAAAPR 329 >gi|323137611|ref|ZP_08072688.1| Sua5/YciO/YrdC/YwlC family protein [Methylocystis sp. ATCC 49242] gi|322397237|gb|EFX99761.1| Sua5/YciO/YrdC/YwlC family protein [Methylocystis sp. ATCC 49242] Length = 321 Score = 331 bits (850), Expect = 7e-89, Method: Composition-based stats. Identities = 122/305 (40%), Positives = 173/305 (56%), Gaps = 5/305 (1%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L G +A PTETVYGL D+ N A+ R+Y+ K RP+ NPLI H++DI ++ A + Sbjct: 19 LREGGLVAFPTETVYGLGADATNAWAVARIYDAKGRPSFNPLIAHIADIESARREALLPE 78 Query: 79 LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAI 137 +L LA+ FWPGPLT+V + + L+ A L + R+P + LI G P+A Sbjct: 79 AALRLAEAFWPGPLTIVAPVAPGGSVCELARAGLPSVALRIPDHPVAQALIAALGRPIAA 138 Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197 PSANRSG +S H+ + + + +I+DGG + GLESTIV+ CE +LRPG + Sbjct: 139 PSANRSGHVSPVTAAHV-AEDLSGRVEMILDGGRTTAGLESTIVSF-CEATPILLRPGAI 196 Query: 198 EIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPI 257 E +++ + +L + +PGM SHYAP +++RL A + P E + FG Sbjct: 197 SREAIEKVLGEKL--AAPARAEVLAPGMTASHYAPDARLRLEAHELEPGEGALDFGGRLT 254 Query: 258 KNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLER 317 L+LS G L EAA NLF Y++ D G S+A + IP GLG AIN+RL R Sbjct: 255 ALAPPGATVLDLSPVGDLVEAAANLFAYLREFDARGVRSVAVAHIPERGLGEAINDRLRR 314 Query: 318 AAAPR 322 A+APR Sbjct: 315 ASAPR 319 >gi|241895236|ref|ZP_04782532.1| SUA5 family translation factor [Weissella paramesenteroides ATCC 33313] gi|241871542|gb|EER75293.1| SUA5 family translation factor [Weissella paramesenteroides ATCC 33313] Length = 342 Score = 331 bits (850), Expect = 8e-89, Method: Composition-based stats. Identities = 105/343 (30%), Positives = 163/343 (47%), Gaps = 18/343 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I + + A + G +A PTETVYGL D+ N A+ ++Y K RP+ NPL Sbjct: 1 MTETKIWTVDEMDAAARAIKRGSLVAFPTETVYGLGADAYNEKAVGKVYAAKGRPSDNPL 60 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 I HV+D V A V+ + L +WPGPLT++L + + T L T R+P Sbjct: 61 IVHVADPEQVADFAIVNERAQKLMAAYWPGPLTMILPVKPDV-LSMTVTGGLDTVAVRLP 119 Query: 121 CGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 ++LI G PL PSAN SG+ S T KH+ + +I I+D G +KIG+EST Sbjct: 120 DNAATRQLIRESGKPLVGPSANTSGKPSPTLAKHVY-HDLHGKIAGILDDGPTKIGVEST 178 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELE---YCVDETSTPQSPGMLKSHYAPRSQV 236 ++++ + +LRPG + ++ I V ++ + V + TP++PGM HYAP V Sbjct: 179 VLDLSTDMPA-VLRPGKITPAQIESVIGVPVDSEIHRVADNETPKAPGMKYRHYAPDKAV 237 Query: 237 RLRAIHVN----------PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYM 286 + A + N IK + A + S AA LF + Sbjct: 238 YMVAPEDWTQAIIWMQSQVEPVGLMLTNDLIKKHQLAGMDFIWSLGDNNDTAAAKLFAGL 297 Query: 287 KIADD-SGASSIAFSSIPNHGLGIAINNRLERAAAPRNQSQRI 328 + DD +I +++P + A NNRL +A+ ++ + Sbjct: 298 RYFDDKKDVQTILVAAMPQVDVNGAYNNRLGKASGGHWITELL 340 >gi|158321595|ref|YP_001514102.1| Sua5/YciO/YrdC/YwlC family protein [Alkaliphilus oremlandii OhILAs] gi|158141794|gb|ABW20106.1| Sua5/YciO/YrdC/YwlC family protein [Alkaliphilus oremlandii OhILAs] Length = 349 Score = 331 bits (850), Expect = 8e-89, Method: Composition-based stats. Identities = 99/338 (29%), Positives = 162/338 (47%), Gaps = 26/338 (7%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 D + + L G +A PTETVYGL ++ + AI++++E K RP+ NPLI H++ Sbjct: 10 IDRRLIVECGSILRNGGVVAFPTETVYGLGANALDANAIKKIFEAKGRPSDNPLIVHIAK 69 Query: 67 ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125 V + + L + FWPGPLTL+ + + I TA L T R+P Sbjct: 70 KEDVIPLVKNIPEIGRILMEKFWPGPLTLLFE--KSDIIPNEVTAGLSTVGIRMPSHPIA 127 Query: 126 -KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 LIE P+A PSAN SG+ S T +H++ + + II GG +GLEST++++ Sbjct: 128 GALIEAAQVPVAAPSANTSGRPSPTKGQHVIEDMMG-RVDAIISGGECNVGLESTVLDIT 186 Query: 185 CEKKVRILRPGGLEIETLKRAIS-----VELEYCVDETSTPQSPGMLKSHYAPRSQV--- 236 + + ILRPGG+ E L+ + +E P+SPGM +HYAP++ V Sbjct: 187 GDIPM-ILRPGGVTKEMLEAVLGQVAVDAAIEDPSKSVEKPKSPGMKYTHYAPKADVIVV 245 Query: 237 ---------RLRAIHVNPREALIRFGNV---PIKNIENAIISLNLSKTGKLKEAAFNLFN 284 +++ + R R G + K++ + ++ + A +F Sbjct: 246 EGPVEQMVMKIKVLEREYRAKGKRVGIICTEETKDLYGEAMVKSMGSRQVPETIAACIFK 305 Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 ++ D++ I ++ +G AI NRL++AA R Sbjct: 306 VLREFDETDVDIILSEAVEAVEIGQAIMNRLKKAAGYR 343 >gi|238853676|ref|ZP_04644044.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus gasseri 202-4] gi|238833714|gb|EEQ25983.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus gasseri 202-4] Length = 330 Score = 331 bits (850), Expect = 8e-89, Method: Composition-based stats. Identities = 107/331 (32%), Positives = 158/331 (47%), Gaps = 15/331 (4%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ I + +A E L G +A PTETVYGL + N A++ +Y K RP+ NPL Sbjct: 1 MET-KIFSKKQIPEAVELLKKGELVAFPTETVYGLGALATNEKAVKGVYAAKGRPSDNPL 59 Query: 61 ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I VSD M++ + V + L K FWPGPLT++L + T + T L TA FR Sbjct: 60 IVTVSDEKMMENYVNEVPERAKKLIKHFWPGPLTIILFVKEGT-LPDAVTGGLPTAAFRC 118 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T LI G P+ PSAN S + S T H+ + +I IID G ++IGLES Sbjct: 119 PDDELTHDLISELGKPIVGPSANTSTKPSPTTAGHVY-HDLKGKIAGIIDNGPTEIGLES 177 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQ 235 TIV++ E +LRPG + E + + + E+ + P++PGM HYAP + Sbjct: 178 TIVDLSVETP-TVLRPGEITPEEISKVLGEEVLMNKGTTQTKGVPKAPGMKYRHYAPSAP 236 Query: 236 VRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKL----KEAAFNLFNYMKIAD- 290 V + + + ++ + +N S L +AA NLF ++ D Sbjct: 237 VFI-VDKEEDFSKIKWDKETGVAALDEVLDKINSSNKYSLGTTIDKAAHNLFGALRYFDS 295 Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 ++ I + + A NRL +AAA Sbjct: 296 ENNIKRIYVQGFDHGTISPAYMNRLNKAAAG 326 >gi|325911759|ref|ZP_08174166.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners UPII 143-D] gi|325476525|gb|EGC79684.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners UPII 143-D] Length = 331 Score = 331 bits (850), Expect = 9e-89, Method: Composition-based stats. Identities = 107/326 (32%), Positives = 168/326 (51%), Gaps = 14/326 (4%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I + + +++A + L G +A PTETVYGL D+ N A++ +Y K RP+ NPLI V+ Sbjct: 5 IFNKDNIKQAAQLLAQGELVAFPTETVYGLGADATNEEAVKNVYRAKGRPSDNPLIVTVA 64 Query: 66 DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123 D +M+KK+ + + L FWPGPLTL+L + T + T L TA FR P Sbjct: 65 DEAMMKKYVTEIPADAQKLIDHFWPGPLTLILFVKEGT-LPDAVTGGLPTAAFRCPQDPL 123 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 T +LI+T P+ PSAN S + S T +H+ + +I IID G +KIGLESTI+++ Sbjct: 124 TNELIQTLTRPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDNGPTKIGLESTIIDL 182 Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 ++ V +LRPG + + L + ++ + V P++PGM HYAP S V + Sbjct: 183 SVDQPV-VLRPGEITPDELSEVLDKKVLLNKGTVQTKDVPKAPGMKYRHYAPSSPVYIVD 241 Query: 241 IHVN----PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD-DSGAS 295 + P ++ + + N+ + + S + EAA NLF ++ D + Sbjct: 242 DPADFAYIPHDSSVGVAALA-DNLHDLGDADRFSLGVSIDEAAHNLFGALRYFDSNEQIK 300 Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321 +I + A NRL +AA+ Sbjct: 301 TIYVQGFAKGNISAAYMNRLNKAASG 326 >gi|295094170|emb|CBK83261.1| Sua5/YciO/YrdC/YwlC family protein [Coprococcus sp. ART55/1] Length = 350 Score = 331 bits (850), Expect = 9e-89, Method: Composition-based stats. Identities = 108/344 (31%), Positives = 165/344 (47%), Gaps = 28/344 (8%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + D +A E L G +A PTETVYGL D+ NP A R+Y K RP+ NPLI H++ Sbjct: 10 VDDDRMYEQAAEILKRGGLVAFPTETVYGLGGDALNPDASHRIYAAKGRPSDNPLIVHIA 69 Query: 66 DISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 + S V + A V + L + FWPGPLT++L+ + +T L T R+P Sbjct: 70 ETSSVYELAETVSDDTKKLMEAFWPGPLTIILN--KKEVVPHTTTGGLDTVAIRMPSHPV 127 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 +LI+ G +A PSAN SG+ S T +H+ + I +IIDGG IG+ESTIV++ Sbjct: 128 AMRLIKDSGVYIAAPSANLSGRPSPTTAQHV-QQDMDGRIDMIIDGGAVGIGIESTIVDM 186 Query: 184 QCEKKVRILRPGGLEIETLKRAIS-VELEYCV---DETSTPQSPGMLKSHYAPRSQVRLR 239 ++ ILRPG + E ++ + V ++ + + P++PGM +HYAP+ ++ + Sbjct: 187 TGDRP-TILRPGYITPEMIRDIVGDVTIDPAITGMNNALRPKAPGMKYTHYAPKGELSIV 245 Query: 240 AIHVNPREALIR--FGNVPIKNIENAII----------------SLNLSKTGKLKEAAFN 281 IR + + AI+ + + Sbjct: 246 EGDRLAAAEKIRSLVAEKKAQGYKTAILCDTDNVSLYDDGVCENVYDAGSKKNEITVSAG 305 Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325 L++ ++ DD GA I S +G AI NRL +AA R S Sbjct: 306 LYSLLRTCDDIGAQYIYSESFEEGDMGYAIMNRLIKAAGHRIIS 349 >gi|92119409|ref|YP_579138.1| hypothetical protein Nham_4009 [Nitrobacter hamburgensis X14] gi|91802303|gb|ABE64678.1| translation factor SUA5 [Nitrobacter hamburgensis X14] Length = 328 Score = 331 bits (850), Expect = 9e-89, Method: Composition-based stats. Identities = 137/309 (44%), Positives = 180/309 (58%), Gaps = 6/309 (1%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A L G +A PTETVYGL D+ N A+ RLY K RPA NPLI HV D++ ++ A Sbjct: 20 AVRTLRDGGLVAFPTETVYGLGADAANAEAVARLYRAKGRPAFNPLIAHVGDLAAAQRIA 79 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133 D +L LA FWPGPLTLVL + L+TA L T RVP + ++ +G Sbjct: 80 RFDATALALASAFWPGPLTLVLPKAPRCPVADLATAGLDTIALRVPAHPVARDILRGFGG 139 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 + PSAN SG +S T H+ S + I LI+DGG ++G+ESTIV + +LR Sbjct: 140 AVVAPSANLSGHVSPTTAAHV-QSDLAGRIDLIVDGGPVEVGVESTIVGCF--ESPTLLR 196 Query: 194 PGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIR 251 PGG+ ++R + L Y P + GML SHYAPR++VRL A + EAL+ Sbjct: 197 PGGIPRADIERVLGSALAPHYPGAADGQPLASGMLASHYAPRARVRLNAASLTRGEALLA 256 Query: 252 FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAI 311 FG V + I+ A +NLS+ G LKEAA NLF Y++ D SGA +IA +P+ GLG AI Sbjct: 257 FGPVDLAGIDTAAAVMNLSERGDLKEAAANLFGYLRALDASGARTIAVMPVPDDGLGEAI 316 Query: 312 NNRLERAAA 320 N+RL RAAA Sbjct: 317 NDRLRRAAA 325 >gi|332980647|ref|YP_004462088.1| translation factor SUA5 [Mahella australiensis 50-1 BON] gi|332698325|gb|AEE95266.1| translation factor SUA5 [Mahella australiensis 50-1 BON] Length = 350 Score = 331 bits (850), Expect = 9e-89, Method: Composition-based stats. Identities = 107/337 (31%), Positives = 176/337 (52%), Gaps = 28/337 (8%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 + +A+RKA + G +A PTETVYGL ++ + +A+ R++E K RP+ NPLI H+ D Sbjct: 13 INEDAIRKAAILIRKGEVVAFPTETVYGLGANALDASAVHRIFEAKGRPSDNPLIVHICD 72 Query: 67 ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 ISM+++ V +L L + FWPGPLT+++ I TA L T R+P Sbjct: 73 ISMLEEVVEHVPSKALLLMERFWPGPLTIIMKKHKK--IPYEVTAGLDTVGVRMPDHPIA 130 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 LI + G P+A PSAN SG+ S T +H++ + + I II GG K+G+EST++++ Sbjct: 131 LALIRSAGVPIAAPSANISGRPSPTKPEHVI-ADMQGRIAAIIAGGTCKVGVESTVLDLS 189 Query: 185 CEKKVRILRPGGLEIETLKRAISVE------LEYCVDETSTPQSPGMLKSHYAPRSQVRL 238 V + RPGG+ +E L+ I L+ E + P SPGM HY+P+++V + Sbjct: 190 GNNPV-LYRPGGITLEMLEEVIGKVDTASGILKPVFAEGAVP-SPGMKYKHYSPKAKVII 247 Query: 239 RAIHVNPREALIR---------------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLF 283 ++ A I+ K + + + + + K + A LF Sbjct: 248 VDGPIDRVIARIKKEADAYRQKGYNVGIMATEQTKAMYSEYMVIAVGDREKPETIAAALF 307 Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + +++ D + A + ++ +G+G+AI NR+ RAA Sbjct: 308 DTLRLFDKAKADVVLAEAVDANGVGLAIMNRMVRAAG 344 >gi|283796629|ref|ZP_06345782.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium sp. M62/1] gi|291076052|gb|EFE13416.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium sp. M62/1] Length = 377 Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats. Identities = 107/324 (33%), Positives = 161/324 (49%), Gaps = 26/324 (8%) Query: 20 DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDP 78 G +A PTETVYGL ++ + TA RR+YE K RP+ NPLI H++D + A + Sbjct: 53 REGGLVAFPTETVYGLGANALDETAARRIYEAKGRPSDNPLIAHIADFEALAPLTAEIPE 112 Query: 79 LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAI 137 LA+ FWPGPLT+V + + +T L+T R+P ++LI G P+A Sbjct: 113 AGRKLAEAFWPGPLTMVF--KKSGVVPHGTTGGLETVAVRMPSDPVARELIRLAGVPIAA 170 Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197 PSAN SG+ S T +H+L + +I +I+DGG IG+ESTIV+V E+ +LRPG + Sbjct: 171 PSANTSGRPSPTRAEHVL-QDMDGKIEMIVDGGPVGIGVESTIVDVT-EEIPTLLRPGAV 228 Query: 198 EIETLKRAIS-----VELEYCVDETSTPQSPGMLKSHYAPRSQV------------RLRA 240 +E L+ + + + P++PGM HYAP++ + R+ A Sbjct: 229 TMEMLRSVVGETAVDPAITGPMRADIKPKAPGMKYRHYAPKADLTLVEGETDAVVSRINA 288 Query: 241 IHVNPREALIRFGNVPIKNIEN---AIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297 + A R G + + ++ A I ++ A NL+ ++ DD I Sbjct: 289 LAAEKLGAGQRVGIICTEETKDRYPAGILKSIGMRANEATVAHNLYAVLREFDDLEVDCI 348 Query: 298 AFSSIPNHGLGIAINNRLERAAAP 321 S LG AI NRL +AA Sbjct: 349 FSESFQADDLGQAIMNRLNKAAGY 372 >gi|225175847|ref|ZP_03729840.1| Sua5/YciO/YrdC/YwlC family protein [Dethiobacter alkaliphilus AHT 1] gi|225168771|gb|EEG77572.1| Sua5/YciO/YrdC/YwlC family protein [Dethiobacter alkaliphilus AHT 1] Length = 355 Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats. Identities = 102/334 (30%), Positives = 165/334 (49%), Gaps = 24/334 (7%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A L G +A PTETVYGL ++ N A+ +++ K RP+ NPLI HV Sbjct: 21 QEQIAQAGRILAGGGLVAFPTETVYGLGANALNGPAVEKIFNAKGRPSDNPLIVHVDRAD 80 Query: 69 MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 +++ A + P + LAK FWPGPLTLVL + + LKT R+P Sbjct: 81 KIRELAQNIPPEAWCLAKHFWPGPLTLVLPKQEI--VPREVSGGLKTVAVRIPDHPVALA 138 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L++T G P+A PSAN SG+ S T H+L + I ++DGG +G+EST+++++ Sbjct: 139 LLKTAGVPVAAPSANLSGRPSPTTAGHVL-DDLDGRIDAVVDGGPCGVGVESTVLSIENG 197 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCV---DETSTPQSPGMLKSHYAPRSQVRL----- 238 + V +LRPGG+ E + + + P SPG+ +HYAP++ + L Sbjct: 198 QPV-VLRPGGVTPEQITQVLGKVCAVAAWQEQSGDAPPSPGLKYTHYAPQAPMYLLLGKP 256 Query: 239 -------RAIHVNPREALIRFGNVPIKNIEN---AIISLNLSKTGKLKEAAFNLFNYMKI 288 +A+ + G + + + N A L + + E A NL++ ++ Sbjct: 257 EAVAEKMQAMRDEFWAQSQKVGLLLSRELSNRVTADAVEVLGERDRPVELAANLYSALRR 316 Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 D++ I + G+G A+ NR+ +AA PR Sbjct: 317 LDETDCDVILAEGYNDEGMGFALMNRMAKAAGPR 350 >gi|116629881|ref|YP_815053.1| putative translation factor (SUA5) [Lactobacillus gasseri ATCC 33323] gi|311110483|ref|ZP_07711880.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus gasseri MV-22] gi|116095463|gb|ABJ60615.1| translation factor SUA5 [Lactobacillus gasseri ATCC 33323] gi|311065637|gb|EFQ45977.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus gasseri MV-22] Length = 334 Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats. Identities = 107/331 (32%), Positives = 158/331 (47%), Gaps = 15/331 (4%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ I + +A E L G +A PTETVYGL + N A++ +Y K RP+ NPL Sbjct: 5 MET-KIFSKKQIPEAVELLKKGELVAFPTETVYGLGALATNEKAVKGVYAAKGRPSDNPL 63 Query: 61 ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I VSD M++ + V + L K FWPGPLT++L + T + T L TA FR Sbjct: 64 IVTVSDEKMMENYVNEVPERAKKLIKHFWPGPLTIILFVKEGT-LPDAVTGGLPTAAFRC 122 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T LI G P+ PSAN S + S T H+ + +I IID G ++IGLES Sbjct: 123 PDDELTHDLISELGKPIVGPSANTSTKPSPTTAGHVY-HDLKGKIAGIIDNGPTEIGLES 181 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQ 235 TIV++ E +LRPG + E + + + E+ + P++PGM HYAP + Sbjct: 182 TIVDLSVETP-TVLRPGEITPEEISKVLGEEVLMNKGTTQTKGVPKAPGMKYRHYAPSAP 240 Query: 236 VRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKL----KEAAFNLFNYMKIAD- 290 V + + + ++ + +N S L +AA NLF ++ D Sbjct: 241 VFI-VDKEEDFSKIKWDKETGVAALDEVLDKINSSNKYSLGTTIDKAAHNLFGALRYFDS 299 Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 ++ I + + A NRL +AAA Sbjct: 300 ENNIKRIYVQGFDHGTISPAYMNRLNKAAAG 330 >gi|146296540|ref|YP_001180311.1| Sua5/YciO/YrdC/YwlC family protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410116|gb|ABP67120.1| translation factor SUA5 [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 348 Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats. Identities = 109/336 (32%), Positives = 161/336 (47%), Gaps = 25/336 (7%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 D N L KA + L G +A PTETVYGL ++ A+ +++ K RP NPLI H+S Sbjct: 11 IDYNKLSKAAQILKEGGLVAFPTETVYGLGANALLKEAVDKIFVAKGRPQDNPLIVHISS 70 Query: 67 ISMVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 M+ A V D L + FWPGPLT+VL I TA L T R+P Sbjct: 71 KKMLDMCAKVTDERVYKLIEKFWPGPLTIVLPKKEC--IPDNVTAGLNTVGIRMPNNKIA 128 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 +LIE G P+A PSAN SG+ S T +H++ + ++ +IIDGG GLEST++++ Sbjct: 129 LELIELAGVPVAAPSANVSGKPSPTEAQHVI-EDLFGKVDVIIDGGKCSFGLESTVIDLS 187 Query: 185 CEKKVRILRPGGLEIETLKRAI-SVELEYCVDET---STPQSPGMLKSHYAPRSQVRLRA 240 K ILRPG + LK + +E + + S P++PGM HYAP +++ + Sbjct: 188 SSKPY-ILRPGAVPFSILKEILEDIEYDPSILAGNILSVPKAPGMKYKHYAPDAKMIVVK 246 Query: 241 IHVNPREALIRF--GNVPIKNIENAIISLN-------------LSKTGKLKEAAFNLFNY 285 ++ R I ++ IK + I+ L KE NLF+ Sbjct: 247 GKIHKRIDKINEIKKDLEIKGYKVGILCFYETSHNFESQYKIVLGSMFDYKECGKNLFSA 306 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 ++ + G I +A+ NRL +A+A Sbjct: 307 LRRFNHLGVDYIICEWGEFGIEYLALENRLFKASAN 342 >gi|297564656|ref|YP_003683628.1| Sua5/YciO/YrdC/YwlC family protein [Meiothermus silvanus DSM 9946] gi|296849105|gb|ADH62120.1| Sua5/YciO/YrdC/YwlC family protein [Meiothermus silvanus DSM 9946] Length = 327 Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats. Identities = 113/321 (35%), Positives = 175/321 (54%), Gaps = 10/321 (3%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M ++ T + +A + G +A PTETVYGL ++ + +A+ R++E K+RP+++PL Sbjct: 10 MAVVPTT-PREIEQAARVIREGGLVAFPTETVYGLGANALDASAVARIFEAKRRPSLDPL 68 Query: 61 ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I HV+D +M+ + A V P L + FWPGPLTLVL + + T+ L T R+ Sbjct: 69 IVHVADRAMLLRVAREVPPQVEPLMEKFWPGPLTLVLPKAEA--VPGIVTSGLPTVAVRM 126 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P +LI G P+A PSAN G +S T +H+ + + + LI+DGG + G+ES Sbjct: 127 PAHPVALELIRQAGLPIAAPSANPFGYLSPTRAEHV-ERMLGEAVDLILDGGPTLYGVES 185 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238 TI + +K +LR G + +E L+ + +E V E+ P PG L HYAPR+ +++ Sbjct: 186 TI--LLLAEKPVVLRHGAIPLEELESILG-RVELRVGESVRPLVPGQLPQHYAPRTPIQV 242 Query: 239 RAIHVNPREALIRFGNVPIKNIENAI-ISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297 P+E + G + +++ I LS TG L+EAA +LF + D G +I Sbjct: 243 ARPDEVPKELRKQSGYLAFRDVPKGFKIVKVLSPTGDLREAAAHLFEALHQLDRLGLPAI 302 Query: 298 AFSSIPNHGLGIAINNRLERA 318 +P GLG AI +RL RA Sbjct: 303 YAEPVPEEGLGRAIMDRLRRA 323 >gi|325568365|ref|ZP_08144732.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus casseliflavus ATCC 12755] gi|325158134|gb|EGC70287.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus casseliflavus ATCC 12755] Length = 342 Score = 330 bits (848), Expect = 1e-88, Method: Composition-based stats. Identities = 104/337 (30%), Positives = 172/337 (51%), Gaps = 21/337 (6%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ I D + L +A L G +A PTETVYGL + P A+ ++Y++K RP+ NPL Sbjct: 1 MET-KIFDQSQLNEAAAILAEGGLVAFPTETVYGLGASALLPNAVAQVYQVKGRPSDNPL 59 Query: 61 ICHVSDISMVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I H+++ ++ P + L + FWPGPLTL+ + + + + T L TA FR+ Sbjct: 60 IVHIAEPEQLEPFVDNKHPFADKLMETFWPGPLTLIFSIKKDS-LPSIVTGGLSTAAFRM 118 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T LI+ PL PSAN SG+ S T+ H+ + +I I+D G+++IG+ES Sbjct: 119 PNNTKTLALIKQAQQPLVGPSANTSGKPSPTSAAHV-QHDLAGKIAGILDDGVTQIGVES 177 Query: 179 TIVNVQCEK-KVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRS 234 T++++ ILRPG + E L+ + ++ ++ V E+ P++PGM HYAP + Sbjct: 178 TVLDLSDPTAPPIILRPGAISKEQLEAVLQTKVLVDQHLVTESEAPKAPGMKYKHYAPNT 237 Query: 235 QVRLR------AIHVNPREALIRFGNVPIKNIENAI----ISLNLSKTGKLKEAAFNLFN 284 V + A +E ++ G + I + ++ L ++ A LF Sbjct: 238 NVMMINDQDWSAAMAWAKEQQLKVGVLAGPTIAEQVRFEAAAIYLFFDDSVEAATKGLFA 297 Query: 285 YMKIADD--SGASSIAFSSIPNHGLGIAINNRLERAA 319 ++ D+ + + + P GLG A NRL++AA Sbjct: 298 GLRALDESIAELDVLFAPTFPESGLGAAYMNRLKKAA 334 >gi|86748257|ref|YP_484753.1| Sua5/YciO/YrdC/YwlC [Rhodopseudomonas palustris HaA2] gi|86571285|gb|ABD05842.1| translation factor SUA5 [Rhodopseudomonas palustris HaA2] Length = 329 Score = 330 bits (848), Expect = 1e-88, Method: Composition-based stats. Identities = 135/310 (43%), Positives = 176/310 (56%), Gaps = 7/310 (2%) Query: 18 FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77 L G I PTETVYGL D+ P A+ RLY K RP+ NPLI HV+++ +K A D Sbjct: 23 VLRGGGLIGFPTETVYGLGADAAAPAAVARLYAAKGRPSFNPLIAHVANLDAARKIARFD 82 Query: 78 PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136 + LA FWPGPLTLVL + L+TA L + R+P + ++ +G + Sbjct: 83 SRASALAAAFWPGPLTLVLPKAEECTVCDLATAGLDSVAVRIPAHPVAQAILRAFGGAVV 142 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSANRSG +S T H+ + + I LI+DGG +G+ESTIV+ + LRPGG Sbjct: 143 APSANRSGHVSPTTAAHV-RADLDGRIDLIVDGGAVDVGVESTIVSCLGAPAL--LRPGG 199 Query: 197 LEIETLKRAISVELEYCVDETS---TPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFG 253 + E ++R + L + P +PGML SHYAPR+QVRL A V P EAL+ FG Sbjct: 200 VPREAIERLLGCALADPSPAAAGEHAPLAPGMLASHYAPRAQVRLDAGEVRPGEALLAFG 259 Query: 254 NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINN 313 + E A + NLS L EAA NLF +++ D GA IA IP HGLG AIN+ Sbjct: 260 PAALPGAETACATRNLSPAADLTEAAANLFGFLRELDAGGARVIAVMPIPPHGLGEAIND 319 Query: 314 RLERAAAPRN 323 RL RAAAPR+ Sbjct: 320 RLRRAAAPRD 329 >gi|296111567|ref|YP_003621949.1| SUA5 family translation factor (putative) [Leuconostoc kimchii IMSNU 11154] gi|295833099|gb|ADG40980.1| SUA5 family translation factor (putative) [Leuconostoc kimchii IMSNU 11154] Length = 337 Score = 330 bits (848), Expect = 1e-88, Method: Composition-based stats. Identities = 117/330 (35%), Positives = 177/330 (53%), Gaps = 16/330 (4%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 TD AL KA L AG +A PTETVYGL D+ N A+++++ K RPA NPLI V+D Sbjct: 8 TDQQALAKASALLKAGEVVAFPTETVYGLGADATNDLAVKKVFTAKGRPADNPLIMTVAD 67 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 +S ++ + ++ + L FWPG LT++L ++ T + L T L+T FR+P T+ Sbjct: 68 VSQLEAYVTISEAAQKLMTQFWPGSLTIILPII-TGQVSMLVTGGLQTVAFRLPANDVTR 126 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +LI G PL PSAN SG+ S T +H+ + +I I+D G + +G+EST+V++ Sbjct: 127 ELIRMTGVPLVGPSANLSGKPSPTTAQHVW-HDMQGKISGIVDDGPTMVGVESTVVDMSA 185 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETS-----TPQSPGMLKSHYAPRSQVRL-- 238 ILRPG + L+ A+ V + TS TP++PGM HYAP +V + Sbjct: 186 AVP-TILRPGAVTQNQLQEALGVAVIDATSTTSVASDVTPKAPGMKYRHYAPDKKVVMFD 244 Query: 239 RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGK----LKEAAFNLFNYMKIADDSG- 293 R ++ + L + V ++ A + L LS+T L+ A LF ++ DD Sbjct: 245 RLDALDLKLTLQKNDVVMAQDATIAGMQLPLSQTWSLGETLENATEQLFAGLRFYDDDDE 304 Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAAPRN 323 + I +P G+G A NNRL +AA + Sbjct: 305 VAIIYVEKMPPVGIGKAFNNRLAKAAGNQE 334 >gi|325679591|ref|ZP_08159166.1| Sua5/YciO/YrdC/YwlC family protein [Ruminococcus albus 8] gi|324108621|gb|EGC02862.1| Sua5/YciO/YrdC/YwlC family protein [Ruminococcus albus 8] Length = 338 Score = 330 bits (848), Expect = 1e-88, Method: Composition-based stats. Identities = 110/334 (32%), Positives = 176/334 (52%), Gaps = 26/334 (7%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 + N+++KA + + G + +PTETVYGLA ++ N A+R+++ K RPA NPLI HVS Sbjct: 9 SSENSIKKASDLIRTGEVVGMPTETVYGLAANAFNENAVRKIFAAKGRPADNPLIVHVSS 68 Query: 67 ISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFT 124 + + P L+ A+LFWPGPLT+++ + I +++ L T R+P Sbjct: 69 FEEISPLVTEIPVLARKCAELFWPGPLTMIMP--KSDMIPMVTSGGLDTVGIRMPSNNTA 126 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + I+ P+A PSAN SG S T H+L+ + IP IIDGG +G+EST+++ + Sbjct: 127 RAFIKECSCPIAAPSANLSGSPSPTTASHVLND-MKGRIPAIIDGGACGVGVESTVISFE 185 Query: 185 CEKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 + +R+LRPG + E L+ I + +DE + SPGM HYAP+++V + Sbjct: 186 GDG-IRLLRPGFVSAEDLREVTENVLIDKGVLEMLDENARVSSPGMKYKHYAPKAEVSIV 244 Query: 240 AI-----------HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKI 288 + + + L+ F +EN ++ L S +E A LF+ ++ Sbjct: 245 CGNSGEFNGFCMKNASADDVLMVFDESDAAGLENRLLVLGKSD----EEQAQRLFDALRE 300 Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 D+ GA + G+G+A+ NRL RAAA R Sbjct: 301 LDEMGAKKVYARCPNKTGVGLAVYNRLLRAAAFR 334 >gi|260584607|ref|ZP_05852353.1| Sua5/YciO/YrdC/YwlC family protein [Granulicatella elegans ATCC 700633] gi|260157630|gb|EEW92700.1| Sua5/YciO/YrdC/YwlC family protein [Granulicatella elegans ATCC 700633] Length = 341 Score = 330 bits (848), Expect = 1e-88, Method: Composition-based stats. Identities = 115/338 (34%), Positives = 172/338 (50%), Gaps = 21/338 (6%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ I L +A L G +A PTETVYGL + + A+ +++E K RP+ NPL Sbjct: 1 MKT-QIFHQETLDQAATLLKQGEVVAFPTETVYGLGAIATSQEAVLKVFEAKGRPSDNPL 59 Query: 61 ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I HV + V P S LAK FWPGPLT++L P +A L T FR+ Sbjct: 60 IVHVHSVDHVMDTVEEFPESAKLLAKHFWPGPLTMILKAKPGI-YAPALSAGLPTVSFRM 118 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T LIE G PL PSAN+S + S T V+H++ + I I+DGG + +G+ES Sbjct: 119 PNHELTLSLIEQVGIPLVGPSANQSTKPSPTRVEHVV-EDMDGRIAGIVDGGDTSVGVES 177 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEY---CVDETSTPQSPGMLKSHYAPRSQ 235 T++++ E+ ILRPG + E ++ I +EY E TP+SPGM HYAP + Sbjct: 178 TVIDLTNEEGPVILRPGVITKEEIEPIIGPLVEYMKTTTGEKVTPKSPGMKYRHYAPTTP 237 Query: 236 VRLRAIHVNPREALI--------RFGNVPIKNIENAI-----ISLNLSKTGKLKEAAFNL 282 V + V +LI + + NI + + S +L + + + + +L Sbjct: 238 VVVVEGSVEFWHSLIEEYQEQGEKVAVMATDNILDEVRLNVSESYSLGEKDSVADMSHHL 297 Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 FN ++ D + A+ I + G G+A NRLE+A++ Sbjct: 298 FNALRSLDHTDATIILAQASVKEGSGLAYMNRLEKASS 335 >gi|296242927|ref|YP_003650414.1| translation factor SUA5 [Thermosphaera aggregans DSM 11486] gi|296095511|gb|ADG91462.1| translation factor SUA5 [Thermosphaera aggregans DSM 11486] Length = 356 Score = 330 bits (848), Expect = 1e-88, Method: Composition-based stats. Identities = 102/342 (29%), Positives = 164/342 (47%), Gaps = 32/342 (9%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 ++ A L G +A PTETVYGL + A+ R++++K RP+ NPLI HVS + MV Sbjct: 16 EIQYAAGVLRRGGLVAFPTETVYGLGALVWDERAVTRIFQVKGRPSDNPLIVHVSSVEMV 75 Query: 71 KKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 +K AS + + L + WPGPLT+VL + + TA L T R+P LI Sbjct: 76 EKVASRIPEDAYRLMEKAWPGPLTIVLPR--SERVPRTVTAGLDTVAVRMPSHPVALSLI 133 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 G P+A PSAN SG+ S T H++ + + +I+D G + G+EST+VN+ E Sbjct: 134 RETGEPVAAPSANLSGRPSPTTGYHVIRD-LMGRVEVILDAGATLQGVESTVVNILTE-P 191 Query: 189 VRILRPGGLEIETLKRAISVEL-----EYCVDETSTPQSPGMLKSHYAPRSQVRLRA--- 240 +LRPG + +E ++R + + ++ P +PGM HYAP +++ L Sbjct: 192 PTLLRPGAMPVEDVERILGRRILIPGFAKGLEHAEKPLAPGMKYRHYAPSAKLVLVEAPL 251 Query: 241 ------------------IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNL 282 ++ + + ++ + + +L+L L E A NL Sbjct: 252 YTLECLKELAGYIRRQASLNSDGKLCVVATDETLQYYSGSGLKTLSLGSRRDLFEIARNL 311 Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQ 324 F ++ D+ P GLG+ I NRL +AA+ ++ Sbjct: 312 FPTLRKVDEEDCRIAYVEGFPEQGLGLTIMNRLRKAASEKHY 353 >gi|258541814|ref|YP_003187247.1| translation modulator Sua5/YciO/YrdC/YwlC [Acetobacter pasteurianus IFO 3283-01] gi|256632892|dbj|BAH98867.1| translation modulator Sua5/YciO/YrdC/YwlC [Acetobacter pasteurianus IFO 3283-01] gi|256635949|dbj|BAI01918.1| translation modulator Sua5/YciO/YrdC/YwlC [Acetobacter pasteurianus IFO 3283-03] gi|256639004|dbj|BAI04966.1| translation modulator Sua5/YciO/YrdC/YwlC [Acetobacter pasteurianus IFO 3283-07] gi|256642058|dbj|BAI08013.1| translation modulator Sua5/YciO/YrdC/YwlC [Acetobacter pasteurianus IFO 3283-22] gi|256645113|dbj|BAI11061.1| translation modulator Sua5/YciO/YrdC/YwlC [Acetobacter pasteurianus IFO 3283-26] gi|256648168|dbj|BAI14109.1| translation modulator Sua5/YciO/YrdC/YwlC [Acetobacter pasteurianus IFO 3283-32] gi|256651221|dbj|BAI17155.1| translation modulator Sua5/YciO/YrdC/YwlC [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654212|dbj|BAI20139.1| translation modulator Sua5/YciO/YrdC/YwlC [Acetobacter pasteurianus IFO 3283-12] Length = 333 Score = 330 bits (848), Expect = 2e-88, Method: Composition-based stats. Identities = 123/313 (39%), Positives = 171/313 (54%), Gaps = 9/313 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S+ L+ A L G +A TETVYGL D+ P + R++E K RP NPLI H +D Sbjct: 9 SSGLQTAARILREGGLVAFGTETVYGLGGDATQPKTVARIFEAKNRPRFNPLISHFADAQ 68 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127 +PL+ LA FWPGPLTL+L + + L+ L T RVP G + L Sbjct: 69 AAFTQVVANPLAHKLADTFWPGPLTLILPRAPHSTVSDLAADGLPTLAVRVPKGETVQAL 128 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ P+A PSANRSG+IS ++ H+L + I ++D G ++G+EST++++ + Sbjct: 129 LKLVQRPIAAPSANRSGRISPSDAAHVL-EELDGRIDAVLDSGPCQVGVESTVLDISNPE 187 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 + +LRPGG+ +E L+ + + P SPG L SHYAP VRL A V P E Sbjct: 188 RPTLLRPGGITLEALQAVCGTIFMPETEVDAAPASPGRLLSHYAPHLPVRLNATDVAPDE 247 Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG----ASSIAFSSIP 303 AL+ FGN A IS NLS++G L+EAA LF ++ D G IA IP Sbjct: 248 ALLAFGNT---QPSEAAISWNLSESGNLEEAAARLFTGLRTLDKQGQSHHLRGIAVQPIP 304 Query: 304 NHGLGIAINNRLE 316 HGLG+AI +RL Sbjct: 305 QHGLGLAIQDRLN 317 >gi|58337082|ref|YP_193667.1| Sua5 family translation factor [Lactobacillus acidophilus NCFM] gi|227903650|ref|ZP_04021455.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus acidophilus ATCC 4796] gi|58254399|gb|AAV42636.1| putative translation factor SUA5 family [Lactobacillus acidophilus NCFM] gi|227868537|gb|EEJ75958.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus acidophilus ATCC 4796] Length = 334 Score = 330 bits (848), Expect = 2e-88, Method: Composition-based stats. Identities = 108/330 (32%), Positives = 162/330 (49%), Gaps = 18/330 (5%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 I + L A E L G +A PTETVYGL + ++R +Y K RP+ NPLI V Sbjct: 5 KIFKKDQLDDAVELLAKGELVAFPTETVYGLGAIATKEDSVRGVYAAKGRPSDNPLIVTV 64 Query: 65 SDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 SD M++++A V + L K FWPGPLT++L + T + T LKT FR P Sbjct: 65 SDEKMMERYAKEVPERAKKLIKHFWPGPLTILLFVKPNT-LPDAVTGGLKTVAFRCPDDS 123 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 T LI G+P+ PSAN S + S T +H+ + +I IIDGG +++GLESTI++ Sbjct: 124 LTHDLIAKLGYPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDGGPTRVGLESTIID 182 Query: 183 VQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 + E + +LRPG + E L + ++ V + P++PGM HYAP V + Sbjct: 183 LSVETPI-VLRPGEITPEELSEVLGEKVLINTGKVSDKDVPKAPGMKYRHYAPSEPVIV- 240 Query: 240 AIHVNPREALIRFG-NVPIKNIENAIISLNLSKT------GKLKEAAFNLFNYMKIADDS 292 + + I F + +E+ + +++L L +A NLF ++ DD Sbjct: 241 -VDDPADFSKINFNEKTGVAALESVLANIDLPDENKFNLGNDLVDADHNLFGSLRYFDDK 299 Query: 293 -GASSIAFSSIPNHGLGIAINNRLERAAAP 321 +I +A NRL +AA Sbjct: 300 DNVETIYVQGFDEGEESLAYMNRLNKAAGG 329 >gi|312871613|ref|ZP_07731705.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LEAF 3008A-a] gi|311092838|gb|EFQ51190.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LEAF 3008A-a] Length = 338 Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 107/326 (32%), Positives = 168/326 (51%), Gaps = 14/326 (4%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I + + +++A + L G +A PTETVYGL D+ N A++ +Y K RP+ NPLI V+ Sbjct: 12 IFNKDNIKQAAQLLAQGELVAFPTETVYGLGADATNEEAVKNVYRAKGRPSDNPLIVTVA 71 Query: 66 DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123 D +M+KK+ + + L FWPGPLTL+L + T + T L TA FR P Sbjct: 72 DEAMMKKYVTEIPADAQKLIDHFWPGPLTLILFVKEGT-LPDAVTGGLPTAAFRCPQDPL 130 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 T +LI+T P+ PSAN S + S T +H+ + +I IID G +KIGLESTI+++ Sbjct: 131 TNELIQTLARPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDNGPTKIGLESTIIDL 189 Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 ++ V +LRPG + + L + ++ + V P++PGM HYAP S V + Sbjct: 190 SVDQPV-VLRPGEITPDELSEVLHKKVLLNKGTVQTKDVPKAPGMKYRHYAPSSPVYIVD 248 Query: 241 IHVN----PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD-DSGAS 295 + P ++ + + N+ + + S + EAA NLF ++ D + Sbjct: 249 DPADFAYIPHDSSVGVAALA-DNLHDLGDADRFSLGVSIDEAAHNLFGALRYFDSNEQIK 307 Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321 +I + A NRL +AA+ Sbjct: 308 TIYVQGFAKGNISAAYMNRLNKAASG 333 >gi|116493076|ref|YP_804811.1| translation factor SUA5 [Pediococcus pentosaceus ATCC 25745] gi|116103226|gb|ABJ68369.1| translation factor SUA5 [Pediococcus pentosaceus ATCC 25745] Length = 340 Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 107/336 (31%), Positives = 166/336 (49%), Gaps = 20/336 (5%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 + + S+ ++ A + + AG ++ PTETVYGL D+ NP A++++Y K RP+ NPLI Sbjct: 1 MSKLFSSDEIQVAAQAIKAGELVSFPTETVYGLGADATNPEAVKKVYAAKGRPSDNPLIV 60 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC- 121 HV+D + V K A++D S L FWPGPLT++L + ++ + T L TA FR P Sbjct: 61 HVADQTEVAKFANIDDKSKKLMDQFWPGPLTIILPIKKGA-LNSIVTGGLDTAAFRNPAT 119 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 T LI G PL PSAN SG+ S T +H+L + +I ++D G + IG+EST++ Sbjct: 120 QVTIDLIRAAGVPLVGPSANTSGKPSPTKPEHVL-HDLDGKIAGVLDDGETTIGVESTVL 178 Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 ++ ILRPG + + L I + V + P++PGM HYAP +QV + Sbjct: 179 DMSSTTP-SILRPGAITEQALAPLIGEVQTDHHKVGKDEVPKAPGMKYKHYAPNAQVYIV 237 Query: 240 AIHVNPREALIRFGNV-------------PIKNIENAIISLNLSKTGKLKEAAFNLFNYM 286 + + K + +S K A+ LF+ + Sbjct: 238 SDQDWDGVVAWLQKHTDQTIGIMATNEIFETKKLGEFDQVRYISLGVDSKTASRELFDGL 297 Query: 287 KIAD-DSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 + D DS +I G+G A NRL+++A Sbjct: 298 RTFDADSAIKTIFAQGFDRIGIGEAYMNRLQKSAGN 333 >gi|282881792|ref|ZP_06290449.1| protein Sua5 [Peptoniphilus lacrimalis 315-B] gi|281298365|gb|EFA90804.1| protein Sua5 [Peptoniphilus lacrimalis 315-B] Length = 350 Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 97/334 (29%), Positives = 160/334 (47%), Gaps = 23/334 (6%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L+K E G + PTETVYGL + + A++++YE K RP NP I H++ Sbjct: 16 DKKELKKITETFKEGGLVVFPTETVYGLGANGLDKEAVKKIYEAKGRPNDNPSILHIAKT 75 Query: 68 SMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 S + + S P ++ FWPGPLT++ + + T L T R+P Sbjct: 76 SQLDELVSEIPKIAKKCINNFWPGPLTIIF--KKSDIVPMEVTGGLDTVAIRMPSNKIAA 133 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 K+++ P+A PSAN SG+ S T H++ + + +I+DGG S +G+EST+++V Sbjct: 134 KILKNVNLPIAAPSANISGRPSPTKASHVI-EDLMGRVDIIVDGGKSIVGIESTVLDVTT 192 Query: 186 EKKVRILRPGGLEIETLKRA---ISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRLRAI 241 + + ILRPG + +E L++ I ++ + S P+SPG HYAP+ Sbjct: 193 DPPM-ILRPGKVTLEDLQKIDKSIGIDNTTIDAKDKSIPKSPGQKYKHYAPKGMATCFVG 251 Query: 242 HVN-------------PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKI 288 ++ + + + + A + LNL L+E A +LF+ ++ Sbjct: 252 EMDGIVNEINKRIKNSKGKVAVLATSQNLDKYVGADLILNLGDRDNLEEVANSLFDLLRK 311 Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 D+ I G+G++I NRL +A A R Sbjct: 312 CDEEKVDVIFAEGFELKGMGLSIMNRLLKACAGR 345 >gi|309803187|ref|ZP_07697284.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LactinV 11V1-d] gi|309805675|ref|ZP_07699716.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LactinV 09V1-c] gi|309806328|ref|ZP_07700341.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LactinV 03V1-b] gi|309809899|ref|ZP_07703747.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners SPIN 2503V10-D] gi|308164695|gb|EFO66945.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LactinV 11V1-d] gi|308165035|gb|EFO67277.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LactinV 09V1-c] gi|308167312|gb|EFO69478.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LactinV 03V1-b] gi|308169687|gb|EFO71732.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners SPIN 2503V10-D] Length = 331 Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 106/326 (32%), Positives = 168/326 (51%), Gaps = 14/326 (4%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I + + +++A + L G +A PTETVYGL D+ N A++ +Y K RP+ NPLI V+ Sbjct: 5 IFNKDNIKQAAQLLAQGELVAFPTETVYGLGADATNEEAVKNVYRAKGRPSDNPLIVTVA 64 Query: 66 DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123 D +M+KK+ + + L FWPGPLTL+L + + T L TA FR P Sbjct: 65 DEAMMKKYVTEIPADAQKLIDHFWPGPLTLIL-FVKEGALPDAVTGGLPTAAFRCPQDPL 123 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 T +LI+T P+ PSAN S + S T +H+ + +I IID G +KIGLESTI+++ Sbjct: 124 TNELIQTLARPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDNGPTKIGLESTIIDL 182 Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 ++ V +LRPG + + L + ++ + V P++PGM HYAP S V + Sbjct: 183 SVDQPV-VLRPGEITPDELSEVLHKKVLLNKGTVQTKDVPKAPGMKYRHYAPSSPVYIVD 241 Query: 241 IHVN----PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD-DSGAS 295 + P ++ + + N+ + + + S + EAA NLF ++ D + Sbjct: 242 DPADFAYIPHDSSVGVAALA-DNLHDLGDADSFSLGVSIDEAAHNLFGALRYFDSNEQIK 300 Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321 +I + A NRL +AA+ Sbjct: 301 TIYVQGFAKGNISAAYMNRLNKAASG 326 >gi|42518857|ref|NP_964787.1| hypothetical protein LJ0932 [Lactobacillus johnsonii NCC 533] gi|41583143|gb|AAS08753.1| hypothetical protein LJ_0932 [Lactobacillus johnsonii NCC 533] Length = 330 Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 110/330 (33%), Positives = 159/330 (48%), Gaps = 13/330 (3%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ I + + +A L G +A PTETVYGL + N A++ +Y K RP+ NPL Sbjct: 1 MET-KIFNKEQIPEAVALLRKGELVAFPTETVYGLGALATNEKAVKSVYAAKGRPSDNPL 59 Query: 61 ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I VSD M++ + V + L K FWPGPLT++L + T + T L TA FR Sbjct: 60 IVTVSDEQMMENYVSEVPERAKKLIKHFWPGPLTIILFVKEGT-LPDAVTGGLPTAAFRC 118 Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T LI G P+ PSAN S + S T +H+ + +I IID G ++IGLES Sbjct: 119 PNDDMTHDLISGLGKPIVGPSANTSTKPSPTTAEHVF-HDLKGKIAGIIDNGPTEIGLES 177 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQ 235 TIV++ EK +LRPG + E + + E+ P++PGM HYAP + Sbjct: 178 TIVDLSVEKP-TVLRPGEITPEEISAVLGEEVLMNRGTTQTKGVPKAPGMKYRHYAPSAP 236 Query: 236 VRLRAIHVN--PREALIRFGNVPIKNIENAIISLNLSKTGK-LKEAAFNLFNYMKIAD-D 291 V + + + G + + I S N GK + +AA NLF ++ D + Sbjct: 237 VLIVDKEEDFSKIQWDDETGVAALDEVLEKIDSPNKYSLGKTIDKAAHNLFGALRYFDGE 296 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAAP 321 I + + A NRL +AAA Sbjct: 297 DKIKRIYVQGFDHGAISAAYMNRLNKAAAG 326 >gi|300813902|ref|ZP_07094206.1| Sua5/YciO/YrdC/YwlC family protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511965|gb|EFK39161.1| Sua5/YciO/YrdC/YwlC family protein [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 350 Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats. Identities = 97/334 (29%), Positives = 159/334 (47%), Gaps = 23/334 (6%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L+K E G + PTETVYGL + + A++++YE K RP NP I H++ Sbjct: 16 DKKELKKITETFKEGGLVVFPTETVYGLGANGLDKEAVKKIYEAKGRPNDNPSILHIAKT 75 Query: 68 SMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 S + + S P ++ FWPGPLT++ + + T L T R+P Sbjct: 76 SQLDELVSEIPKIAKKCINNFWPGPLTIIF--KKSDIVPMEVTGGLDTVAIRMPSNKIAA 133 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 K+++ P+A PSAN SG+ S T H++ + + +I+DGG S +G+EST+++V Sbjct: 134 KILKNVNLPIAAPSANISGRPSPTKASHVI-EDLMGRVDIIVDGGKSIVGIESTVLDVTT 192 Query: 186 EKKVRILRPGGLEIETLKRA---ISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRLRAI 241 + + ILRPG + +E L++ I ++ + S P+SPG HYAP+ Sbjct: 193 DPPM-ILRPGKVTLEDLQKIDKSIGIDNTTIDAKDKSIPKSPGQKYKHYAPKGMATCFVG 251 Query: 242 HVN-------------PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKI 288 ++ + + + A + LNL L+E A +LF+ ++ Sbjct: 252 EMDGIVNEINKRIKNSKGRVAVLATSQNLDKYVGADLILNLGDRDNLEEVANSLFDLLRK 311 Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 D+ I G+G++I NRL +A A R Sbjct: 312 CDEEKVDVIFAEGFELKGMGLSIMNRLLKACAGR 345 >gi|257867025|ref|ZP_05646678.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus casseliflavus EC30] gi|257873360|ref|ZP_05653013.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus casseliflavus EC10] gi|257801081|gb|EEV30011.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus casseliflavus EC30] gi|257807524|gb|EEV36346.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus casseliflavus EC10] Length = 342 Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats. Identities = 103/337 (30%), Positives = 167/337 (49%), Gaps = 21/337 (6%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ I D L +A L G +A PTETVYGL + PTA+ ++Y++K RP+ NPL Sbjct: 1 MET-KIFDQTQLNEAAAILAEGGLVAFPTETVYGLGASALLPTAVAQVYQVKGRPSDNPL 59 Query: 61 ICHVSDISMVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I H+++ ++ P + L + FWPGPLTL+ + + + + T L TA FR+ Sbjct: 60 IVHIAEPEQLEPFVDNKHPFADKLMETFWPGPLTLIFSIKKDS-LPSIVTGGLSTAAFRM 118 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T LI+ PL PSAN SG+ S T+ H+ + +I I+D G+++IG+ES Sbjct: 119 PNNTKTLALIKQAQQPLVGPSANTSGKPSPTSAAHV-QHDLAGKIAGILDDGVTQIGVES 177 Query: 179 TIVNVQCEK-KVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRS 234 T++++ ILRPG + E L+ + ++ ++ V E+ P++PGM HYAP + Sbjct: 178 TVLDLSDPTAPPIILRPGAISKEQLEAVLQTKVLVDQHLVTESEAPKAPGMKYKHYAPNT 237 Query: 235 QVRLRAIHVNPREALIR----------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFN 284 V + P G + + ++ L ++ A LF Sbjct: 238 NVLMVNDQDWPAAMAWAKEQQFKVGVLAGPTIAEQVRFEAAAIYLFFDDSVEAATKGLFA 297 Query: 285 YMKIADD--SGASSIAFSSIPNHGLGIAINNRLERAA 319 ++ D+ + + + P GLG A NRL++AA Sbjct: 298 GLRALDESIAELDVLFAPTFPESGLGAAYMNRLKKAA 334 >gi|326203240|ref|ZP_08193105.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium papyrosolvens DSM 2782] gi|325986498|gb|EGD47329.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium papyrosolvens DSM 2782] Length = 354 Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats. Identities = 106/347 (30%), Positives = 175/347 (50%), Gaps = 31/347 (8%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 +++ I N AL A E L G+ +A PTETVYGL ++ + A+ ++++ K RP+ Sbjct: 4 KVIKIDAENIDKIALEPAAEALKEGMTVAFPTETVYGLGANALDGAAVSKIFKAKGRPSD 63 Query: 58 NPLICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 NPLI H++D V + S P ++ L WPGPLTLV+ ++ I TA L T Sbjct: 64 NPLIVHIADREKVSELTSFIPAKAVALMDKLWPGPLTLVM--KKSSAIPREITAGLDTVA 121 Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R+P +LI G P+A PSAN SG+ S T +H+L + +I +I+D G S +G Sbjct: 122 IRMPGHPVALELIRLAGIPVAAPSANVSGKPSPTTARHVL-DDLEGKIEIIVDAGSSSVG 180 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAIS-----VELEYCVDETSTPQSPGMLKSHY 230 LEST+++V + V +LRPGG+ ++ I + V + P+SPGM HY Sbjct: 181 LESTVLDVSVDPPV-LLRPGGITPRQIEEIIGQIDIDKTIMGKVTADNVPKSPGMKYKHY 239 Query: 231 APRSQVRLRAIHVNPRE--ALIRFGNVPIKNIENAIIS--------------LNLSKTGK 274 +P++ V + + ++ + R IK + + +++ Sbjct: 240 SPKAHVIIVESNDMDKQTEVVCRLAEKYIKEDKKVGVCSTDQTFDRYKLFETISMGDRNH 299 Query: 275 LKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 + A +LF+ ++ DD I ++ +G+G+AI NR+ +AA Sbjct: 300 PETIASSLFSILREFDDREVDIILAEAVDQNGVGLAIMNRMVKAAGY 346 >gi|99078038|ref|YP_611296.1| translation factor SUA5 [Ruegeria sp. TM1040] gi|99035176|gb|ABF62034.1| Sua5/YciO/YrdC/YwlC [Ruegeria sp. TM1040] Length = 323 Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats. Identities = 129/309 (41%), Positives = 173/309 (55%), Gaps = 13/309 (4%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 E L AG +A PTETVYGL D+ N A+ +Y K RP+ NPLI HV+D+ ++ Sbjct: 27 ELLTAGQLVAFPTETVYGLGADATNGAAVAAIYATKGRPSFNPLIAHVADVRAARRLVQW 86 Query: 77 DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPL 135 + + +A FWPGPLTLVL L ++ PL TA L T RVP ++L+ G P+ Sbjct: 87 NDWAEAMATAFWPGPLTLVLPLRPDHNVSPLVTAGLDTLAVRVPAKACSRELLAAVGRPV 146 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 A PSAN SG+IS T H+ + + +I I+D G +G+ESTI+ + + +LRPG Sbjct: 147 AAPSANPSGRISPTTADHV-RAGLGGKIAAILDDGPCGVGVESTILGLAGAAPI-LLRPG 204 Query: 196 GLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNV 255 GL E ++ A+ L E +PG L SHYAP + VRL A +P E + FG Sbjct: 205 GLAAEDIEHALGCTLMTRA-EADPLTAPGQLMSHYAPNASVRLEAQDFSPDEVSLGFGP- 262 Query: 256 PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRL 315 LNLS +G L EAA NLF ++ D G IA + +P GLGIAIN+RL Sbjct: 263 -------GDFDLNLSPSGDLNEAAANLFGHLHHLDALG-RPIAVAPVPERGLGIAINDRL 314 Query: 316 ERAAAPRNQ 324 RAAAPR+ Sbjct: 315 RRAAAPRDS 323 >gi|270291031|ref|ZP_06197254.1| translation factor [Pediococcus acidilactici 7_4] gi|270280427|gb|EFA26262.1| translation factor [Pediococcus acidilactici 7_4] Length = 340 Score = 330 bits (846), Expect = 3e-88, Method: Composition-based stats. Identities = 109/336 (32%), Positives = 170/336 (50%), Gaps = 20/336 (5%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 + I S L A + G +A PTETVYGL D+ NP A++++Y+ K RP+ NPLI Sbjct: 1 MSEIFQSENLADAAAAIQRGDLVAFPTETVYGLGADATNPDAVKKVYQAKGRPSDNPLIV 60 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC- 121 HV+ + V + A +D S L FWPGPLT++L + + P+ T L TA FR P Sbjct: 61 HVTGPAQVAEFAEIDAQSKQLMDTFWPGPLTIILPIKLHA-LDPVVTGGLTTAAFRNPDT 119 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 T KLIE G PL PSAN SG+ S T H++ + +I ++DGG +KIG+EST++ Sbjct: 120 PLTLKLIEQAGVPLVGPSANTSGKPSPTKPAHVM-HDLDGKIAGVLDGGETKIGVESTVL 178 Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 ++ +LRPG + E L + + V + P++PGM HYAP +QV + Sbjct: 179 DMSGTVP-SVLRPGAVTPEDLTPILGEVQTDHHKVGKDEVPKAPGMKYKHYAPNAQVYIV 237 Query: 240 AIHVNPREA--LIRFGNVPIKNIENAIISLN-----------LSKTGKLKEAAFNLFNYM 286 + A + + P+ + + I + +S + A+ +LF+ + Sbjct: 238 KDAQWSKVADWVAQHAQQPVGVLATSAIFDSTKLIDFDNVDFISLGEDARTASHHLFDGL 297 Query: 287 KIAD-DSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 + D + I + G+G A NRL+++A Sbjct: 298 RTFDGNPQIKVIFAQAFDPTGIGAAYMNRLQKSAGN 333 >gi|329667596|gb|AEB93544.1| hypothetical protein LJP_1222c [Lactobacillus johnsonii DPC 6026] Length = 330 Score = 330 bits (846), Expect = 3e-88, Method: Composition-based stats. Identities = 110/330 (33%), Positives = 159/330 (48%), Gaps = 13/330 (3%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ I + + +A L G +A PTETVYGL + N A++ +Y K RP+ NPL Sbjct: 1 MET-KIFNKEQIPEAVALLRKGKLVAFPTETVYGLGALATNEKAVKSVYAAKGRPSDNPL 59 Query: 61 ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I VSD M++ + V + L K FWPGPLT++L + T + T L TA FR Sbjct: 60 IVTVSDEQMMENYVSEVPERAKKLIKHFWPGPLTIILFVKEGT-LPDAVTGGLPTAAFRC 118 Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T LI G P+ PSAN S + S T +H+ + +I IID G ++IGLES Sbjct: 119 PNDDMTHDLISGLGKPIVGPSANTSTKPSPTTAEHVF-HDLKGKIAGIIDNGPTEIGLES 177 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQ 235 TIV++ EK +LRPG + E + + E+ P++PGM HYAP + Sbjct: 178 TIVDLSVEKP-TVLRPGEITPEEISAVLGEEVLMNRGTTQTKGVPKAPGMKYRHYAPSAP 236 Query: 236 VRLRAIHVN--PREALIRFGNVPIKNIENAIISLNLSKTGK-LKEAAFNLFNYMKIAD-D 291 V + + + G + + I S N GK + +AA NLF ++ D + Sbjct: 237 VLIVDKEEDFSKIQWDDETGVAALDEVLEKIDSPNKYSLGKTIDKAAHNLFGALRYFDGE 296 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAAP 321 I + + A NRL +AAA Sbjct: 297 DKIKRIYVQGFDHGAISAAYMNRLNKAAAG 326 >gi|119383189|ref|YP_914245.1| Sua5/YciO/YrdC/YwlC family protein [Paracoccus denitrificans PD1222] gi|119372956|gb|ABL68549.1| translation factor SUA5 [Paracoccus denitrificans PD1222] Length = 316 Score = 329 bits (845), Expect = 3e-88, Method: Composition-based stats. Identities = 141/326 (43%), Positives = 184/326 (56%), Gaps = 14/326 (4%) Query: 1 MQIMSI-TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 MQ + + D +R A E L G P+AIPTETVYGLA D+RNP A+ R+YE K RP+ NP Sbjct: 1 MQTLILGHDPRGVRTAAELLAQGEPVAIPTETVYGLAGDARNPRAVARIYEAKGRPSFNP 60 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 LI HV D++ + A D +L LA+ FWPG LTLVL L I L TA L T RV Sbjct: 61 LIVHVPDLAAAGRIADFDDAALALARAFWPGALTLVLPLRPDAGIASLVTAGLDTVAIRV 120 Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSS--ICKEIPLIIDGGISKIGL 176 P ++++ +G PLA PSAN SG+IS T H + I ++D G +G+ Sbjct: 121 PAHPAAQEVLRVFGGPLAAPSANPSGRISPTTAAHAADPETGLGGRIAAVLDAGACPVGV 180 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQV 236 ESTIV + + +LRPGG+ E ++ + L + P +PG L SHYAPR+ + Sbjct: 181 ESTIVGW-VDGQPALLRPGGVAAEAIEAVLGRPLARPEADPDAPTAPGQLTSHYAPRASL 239 Query: 237 RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296 RL A P E LI FG V + + LS+TG L EAA LF+ + AD Sbjct: 240 RLNADAARPGEVLIGFGPVAGE--------MTLSETGDLTEAAARLFDLLHRADAEE-RP 290 Query: 297 IAFSSIPNHGLGIAINNRLERAAAPR 322 IA + +P GLG AIN+RL RAAAPR Sbjct: 291 IAVAPVPERGLGAAINDRLRRAAAPR 316 >gi|257877103|ref|ZP_05656756.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus casseliflavus EC20] gi|257811269|gb|EEV40089.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus casseliflavus EC20] Length = 342 Score = 329 bits (845), Expect = 3e-88, Method: Composition-based stats. Identities = 103/337 (30%), Positives = 167/337 (49%), Gaps = 21/337 (6%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ I D L +A L G +A PTETVYGL + PTA+ ++Y++K RP+ NPL Sbjct: 1 MET-KIFDQTQLNEAAAILAEGGLVAFPTETVYGLGASALLPTAVAQVYQVKGRPSDNPL 59 Query: 61 ICHVSDISMVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I H+++ ++ P + L + FWPGPLTL+ + + + + T L TA FR+ Sbjct: 60 IVHIAEPEQLEPFVDNKHPFADKLMETFWPGPLTLIFSIKKDS-LPSIVTGGLSTAAFRM 118 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T LI+ PL PSAN SG+ S T+ H+ + +I I+D G+++IG+ES Sbjct: 119 PNNTKTLALIKQAQQPLVGPSANTSGKPSPTSAAHV-QHDLAGKIAGILDDGVTQIGVES 177 Query: 179 TIVNVQCE-KKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRS 234 T++++ ILRPG + E L+ + ++ ++ V E+ P++PGM HYAP + Sbjct: 178 TVLDLSDPMAPPIILRPGAISKEQLEAVLQTKVLVDQHLVTESEAPKAPGMKYKHYAPNT 237 Query: 235 QVRLRAIHVNPREALIR----------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFN 284 V + P G + + ++ L ++ A LF Sbjct: 238 NVMMVNDQDWPAAMAWAKEQQFKVGVLAGPTIAEQVRFEAAAIYLFFDDSVEAATKGLFA 297 Query: 285 YMKIADD--SGASSIAFSSIPNHGLGIAINNRLERAA 319 ++ D+ + + + P GLG A NRL++AA Sbjct: 298 GLRALDESIAELDVLFAPTFPESGLGAAYMNRLKKAA 334 >gi|259503692|ref|ZP_05746594.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus antri DSM 16041] gi|259168324|gb|EEW52819.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus antri DSM 16041] Length = 342 Score = 329 bits (845), Expect = 3e-88, Method: Composition-based stats. Identities = 103/333 (30%), Positives = 167/333 (50%), Gaps = 19/333 (5%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 I N + +A + G +A PTETVYGL D+ N A++ +Y K RP+ NPLI HV Sbjct: 4 KIYRLNQIDEAAAAIRRGELVAFPTETVYGLGADATNEPAVKNVYLAKGRPSDNPLIVHV 63 Query: 65 SDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 + ++MV+++ A + + L FWPG LT++L + + T L T FR P Sbjct: 64 NSVAMVEQYAAEIPEKARKLMAAFWPGSLTIILKIKRGA-LSKTVTGGLSTVAFRFPDNQ 122 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 T LI G P+ PSAN SG+ S T +H+ + +I I+D G +++G+EST+++ Sbjct: 123 PTLDLIGKAGVPIVGPSANTSGKPSPTTAQHVY-HDLNGKITGILDDGPTRVGVESTVLD 181 Query: 183 VQCEKKVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQVRL-- 238 + E V ILRPG + + ++ I + V + TP++PGM HYAP +QV + Sbjct: 182 MSTETPV-ILRPGAVTKQDIEGVIGSIDLNHHQVGKNETPKAPGMKYKHYAPSAQVYIVD 240 Query: 239 ---------RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIA 289 R I P + + ++ + + ++ S + +A+ LF+ ++ Sbjct: 241 DGTDWSTVVRWIAQQPFDVGVMAEEQILQQLTLPMNAVQFSLGTGVADASARLFDGLRGF 300 Query: 290 DDS-GASSIAFSSIPNHGLGIAINNRLERAAAP 321 DD +I + P LG A NRL ++A Sbjct: 301 DDQPNVKAIVTEAFPAKNLGRAYMNRLNKSAGG 333 >gi|315038004|ref|YP_004031572.1| Sua5 family translation factor [Lactobacillus amylovorus GRL 1112] gi|325956457|ref|YP_004291869.1| Sua5 family translation factor [Lactobacillus acidophilus 30SC] gi|312276137|gb|ADQ58777.1| Sua5 family translation factor [Lactobacillus amylovorus GRL 1112] gi|325333022|gb|ADZ06930.1| Sua5 family translation factor [Lactobacillus acidophilus 30SC] gi|327183284|gb|AEA31731.1| Sua5 family translation factor [Lactobacillus amylovorus GRL 1118] Length = 333 Score = 329 bits (845), Expect = 3e-88, Method: Composition-based stats. Identities = 108/334 (32%), Positives = 166/334 (49%), Gaps = 19/334 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ I + L +A + L G +A PTETVYGL + N +++ +Y K RP+ NPL Sbjct: 1 MET-KIFKKDQLDEAVKLLAKGELVAFPTETVYGLGAIATNEKSVKGVYAAKGRPSDNPL 59 Query: 61 ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I +SD M++++A V + L K FWPGPLTL+L + T + T LKT FR Sbjct: 60 IVTISDEKMMERYAKEVPERAKTLIKHFWPGPLTLLLFVKPGT-LPDAVTGGLKTVAFRC 118 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T LI G+P+ PSAN S + S T +H+ + +I IIDGG +++GLES Sbjct: 119 PDDQLTHDLIAKLGYPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDGGPTRVGLES 177 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQ 235 TI+++ + + +LRPG + E L + + ++ V + P++PGM HYAP Sbjct: 178 TIIDLSVKTPI-VLRPGEITPEELSKVLGEKVLINTGKVSDKDVPKAPGMKYRHYAPSEP 236 Query: 236 VRLR-------AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKI 288 V + I N + + G++ K + +L + L +A NLF ++ Sbjct: 237 VIVVDNPADFAKIDFNEKTGVAALGSILAKIDLSDDNKFDLGE--NLVDADHNLFGALRY 294 Query: 289 ADDS-GASSIAFSSIPNHGLGIAINNRLERAAAP 321 DD +I +A NRL +AA Sbjct: 295 FDDKDNIETIYVQGFNEGEESLAYMNRLNKAAGG 328 >gi|329921099|ref|ZP_08277622.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners SPIN 1401G] gi|328935006|gb|EGG31495.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners SPIN 1401G] Length = 331 Score = 329 bits (845), Expect = 3e-88, Method: Composition-based stats. Identities = 106/326 (32%), Positives = 168/326 (51%), Gaps = 14/326 (4%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I + + +++A + L G +A PTETVYGL D+ N A++ +Y K RP+ NPLI V+ Sbjct: 5 IFNKDNIKQAAQLLAQGELVAFPTETVYGLGADATNEEAVKNVYRAKGRPSDNPLIVTVA 64 Query: 66 DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123 D +M+KK+ + + L FWPGPLTL+L + + T L TA FR P Sbjct: 65 DEAMMKKYVTEIPADAQKLIDHFWPGPLTLIL-FVKEGALPDAVTGGLPTAAFRCPQDPL 123 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 T +LI+T P+ PSAN S + S T +H+ + +I IID G +KIGLESTI+++ Sbjct: 124 TNELIQTLARPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDNGPTKIGLESTIIDL 182 Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 ++ V +LRPG + + L + ++ + V P++PGM HYAP S V + Sbjct: 183 SVDQPV-VLRPGEITPDELSEVLHKKVLLNKGTVQTKDVPKAPGMKYRHYAPSSPVYIVD 241 Query: 241 IHVN----PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD-DSGAS 295 + P ++ + + N+ + + + S + EAA NLF ++ D + Sbjct: 242 DPADFAYIPHDSSVGVAALA-DNLHDLGDADSFSLGVSIDEAAHNLFGALRYFDSNEQIK 300 Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321 +I + A NRL +AA+ Sbjct: 301 TIYVQGFAKGNISAAYMNRLNKAASG 326 >gi|146304759|ref|YP_001192075.1| translation factor SUA5 [Metallosphaera sedula DSM 5348] gi|145703009|gb|ABP96151.1| translation factor SUA5 [Metallosphaera sedula DSM 5348] Length = 350 Score = 329 bits (845), Expect = 3e-88, Method: Composition-based stats. Identities = 106/342 (30%), Positives = 162/342 (47%), Gaps = 28/342 (8%) Query: 1 MQIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56 M ++ I N +RKA E + +G +A PTETVYGL ++ +P A ++++ K+RP Sbjct: 1 MIVLKIDPLNPEIELIRKAAEVIRSGGLVAFPTETVYGLGGNALDPKAAEKVFKAKRRPM 60 Query: 57 MNPLICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115 NPLI H++D+S +++ V P L LA+ WPGPLT +L + +T L T Sbjct: 61 DNPLIVHIADLSQLEEVSVDVPPEVLDLAQRVWPGPLTFILKRNP--RVPLETTGGLDTV 118 Query: 116 CFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174 R+P +LI G P+A PSAN + + S T +H++ + + ++IDGG + Sbjct: 119 AVRMPAHPIALQLIRESGVPIAAPSANLATKPSPTLAEHVI-QDLDGSVDVVIDGGETFF 177 Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCVDETS---TPQSPGMLKSHY 230 G+ESTI+N+ V +LRPG +E L + V + V E +PGM HY Sbjct: 178 GVESTIINLTVSPPV-LLRPGPFTVEELNSLLGEVVVPKEVAEGGQFNVALAPGMKYKHY 236 Query: 231 APRSQVRLRA-----------IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAA 279 AP + L + + A + E II L + L A Sbjct: 237 APSKPLYLVEKKSIFKEVVKRLRQKKKVAALCSQETCADVDEPKII---LGTSENLYTVA 293 Query: 280 FNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 NLF + D P G+G+AI NR ++A+A Sbjct: 294 KNLFKSFRQLDTLDVDLGVMEPFPERGIGLAIMNRAKKASAH 335 >gi|259501683|ref|ZP_05744585.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners DSM 13335] gi|315653746|ref|ZP_07906666.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners ATCC 55195] gi|259166968|gb|EEW51463.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners DSM 13335] gi|315489108|gb|EFU78750.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners ATCC 55195] Length = 338 Score = 329 bits (844), Expect = 4e-88, Method: Composition-based stats. Identities = 106/326 (32%), Positives = 167/326 (51%), Gaps = 14/326 (4%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I + + +++A + L G +A PTETVYGL D+ N A++ +Y K RP+ NPLI V+ Sbjct: 12 IFNKDNIKQAAQLLAQGELVAFPTETVYGLGADATNEEAVKNVYRAKGRPSDNPLIVTVA 71 Query: 66 DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123 D +M+KK+ + + L FWPGPLTL+L + + T L TA FR P Sbjct: 72 DEAMMKKYVTEIPADAQKLIDHFWPGPLTLIL-FVKEGALPDAVTGGLPTAAFRCPQDPL 130 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 T +LI T P+ PSAN S + S T +H+ + +I IID G +KIGLESTI+++ Sbjct: 131 TNELIHTLARPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDNGPTKIGLESTIIDL 189 Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 ++ V +LRPG + + L + ++ + V P++PGM HYAP S V + Sbjct: 190 SVDQPV-VLRPGEITPDELSEVLHKKVLLNKGTVQTKDVPKAPGMKYRHYAPSSPVYIVD 248 Query: 241 IHVN----PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD-DSGAS 295 + P ++ + + N+ + + + S + EAA NLF ++ D + Sbjct: 249 DPADFAYIPHDSSVGVAALA-DNLHDLGDADSFSLGVSIDEAAHNLFGALRYFDSNEQIK 307 Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321 +I + A NRL +AA+ Sbjct: 308 TIYVQGFAKGNISAAYMNRLNKAASG 333 >gi|312793262|ref|YP_004026185.1| sua5/ycio/yrdc/ywlc family protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180402|gb|ADQ40572.1| Sua5/YciO/YrdC/YwlC family protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 348 Score = 329 bits (844), Expect = 4e-88, Method: Composition-based stats. Identities = 112/337 (33%), Positives = 158/337 (46%), Gaps = 27/337 (8%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 D L KA L G +A PTETVYGL ++ A+ +++ K RP NPLI HVS Sbjct: 11 IDYKKLEKAALILREGGLVAFPTETVYGLGANALLKDAVDKIFWAKGRPQDNPLIVHVSS 70 Query: 67 ISMVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 M++ A + D L + FWPGPLT+VL I TA L T R+P Sbjct: 71 KDMLEMCAEITDERVYMLIERFWPGPLTIVLP--KKDVIPENVTAGLSTVGVRMPANKIA 128 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 +LI G P+A PSAN SG+ S T KH++ + ++ +IIDGG GLEST+V++ Sbjct: 129 LELIRLSGVPVAAPSANVSGKPSPTEAKHVI-EDLMGKVDVIIDGGKCSFGLESTVVDLS 187 Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVD-----ETSTPQSPGMLKSHYAPRSQVRLR 239 EK V ILRPG + LK + ++EY + P+SPGM HYAP +++ + Sbjct: 188 GEKAV-ILRPGAISYFALKEVLG-DIEYSKSVVEGLTGTVPRSPGMKYKHYAPDAKLIIV 245 Query: 240 AIHVNPREALI--RFGNVPIKNIENAIISLN-------------LSKTGKLKEAAFNLFN 284 ++ R I + K I+ L KE NLF+ Sbjct: 246 KGRIDKRIDKINEMKKKLEFKGYNVGILCFYETAHNFDSQYKLILGSMFDAKECGRNLFS 305 Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 ++ + G I +A+ NRL +AAA Sbjct: 306 ILRKFNQLGVDYILCEWGEFDLEFLALENRLYKAAAN 342 >gi|150401886|ref|YP_001325652.1| Sua5/YciO/YrdC/YwlC family protein [Methanococcus aeolicus Nankai-3] gi|150014589|gb|ABR57040.1| Sua5/YciO/YrdC/YwlC family protein [Methanococcus aeolicus Nankai-3] Length = 341 Score = 329 bits (844), Expect = 4e-88, Method: Composition-based stats. Identities = 111/345 (32%), Positives = 178/345 (51%), Gaps = 30/345 (8%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ + I + N + A + G +A PTETVYGL D+ NP A+ +++++K RP NPL Sbjct: 1 MK-LKILNKNEIEIAANAIKDGDLVAFPTETVYGLGADALNPDAVEKIFKVKGRPIDNPL 59 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 I HV+++ M K A + + L + F PGPLT++L + ++ ANL T R+P Sbjct: 60 IIHVNNLEMANKIAHITENAKILLQKFSPGPLTIIL--KKKEVVPAITCANLDTVAVRIP 117 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 +LIE P+A PSAN SG+ S TN++HI+ + +I I+G + IG+EST Sbjct: 118 NNKIALELIEKANTPIAAPSANLSGKPSPTNIQHII-DDLGDKINYAIEGETT-IGVEST 175 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTP----QSPGMLKSHYAPRSQ 235 ++++ EKK +ILR G + E LK+ I +EL + +SPGM +HY+P + Sbjct: 176 VLDLT-EKKPKILRYGSITYEDLKKVIDIELIEINKQGKKIIKTVKSPGMKYTHYSPDAP 234 Query: 236 VRLRAIHVNPREALI---------------RFGNVPIKNIENA----IISLNLSKTGKLK 276 + + ++ I G + + ++ I + L LK Sbjct: 235 LIMATGNIEEITGKINDLIKEYTEKGEKNENVGIIITEETKDKYPANIKKIVLGSRSDLK 294 Query: 277 EAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 + NLFN ++ D +G S I GLG+AI +RLE+A++ Sbjct: 295 TISKNLFNSLREMDKNGVSIIFIEGFEKKGLGLAIMDRLEKASSK 339 >gi|331701220|ref|YP_004398179.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus buchneri NRRL B-30929] gi|329128563|gb|AEB73116.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus buchneri NRRL B-30929] Length = 340 Score = 329 bits (844), Expect = 4e-88, Method: Composition-based stats. Identities = 108/337 (32%), Positives = 167/337 (49%), Gaps = 21/337 (6%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ + I L +A +F+ G +A PTETVYGL D+ N TA++++Y K RP+ NPL Sbjct: 1 METL-ILKQQQLDQAADFIRQGELVAFPTETVYGLGADATNETAVKKVYAAKGRPSDNPL 59 Query: 61 ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I VSDI+MV+K+ + L FWPG LT++ L + T L TA FR Sbjct: 60 IVTVSDIAMVEKYTQPFSDDAKALMAKFWPGSLTMIFKLKPNA-LSKSVTGGLDTAAFRF 118 Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T LI G P+ PSAN SG+ S T +H+ + +I I+D G + +G+ES Sbjct: 119 PKNQTTLDLISKAGVPIVGPSANTSGKPSPTTAQHVY-HDLNGKIAAIVDDGPTTVGVES 177 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELE---YCVDETSTPQSPGMLKSHYAPRSQ 235 TI+++ ILRPG + E ++ I + + V TP++PGM HYAP +Q Sbjct: 178 TILDMSVATP-SILRPGAVTKEDIEAVIHRPVIDELHHVGAKQTPKAPGMKYKHYAPNAQ 236 Query: 236 VRLRAIHVNPREALIRFGN----VPIKNIENAIISLN-------LSKTGKLKEAAFNLFN 284 V + + + + + + ++ I ++N +S + AA +LF Sbjct: 237 VYIVDPDDDWHDVVAWIKQHPQPIGVMAFDDIIKTINWPDNVDVISLGNDARTAAHDLFA 296 Query: 285 YMKIADDS-GASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ D+ I I G+G A NRL ++A Sbjct: 297 ELRDFDNHPAYKIIFTQGIDPKGIGEAYMNRLNKSAG 333 >gi|312874663|ref|ZP_07734687.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LEAF 2053A-b] gi|311089893|gb|EFQ48313.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LEAF 2053A-b] Length = 331 Score = 329 bits (844), Expect = 5e-88, Method: Composition-based stats. Identities = 106/326 (32%), Positives = 168/326 (51%), Gaps = 14/326 (4%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I + + +++A + L G +A PTETVYGL D+ N A++ +Y K RP+ NPLI V+ Sbjct: 5 IFNKDNIKQAAQLLAQGELVAFPTETVYGLGADATNEEAVKNVYRAKGRPSDNPLIVTVA 64 Query: 66 DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123 D +M+KK+ + + L FWPGPLTL+L + + T L TA FR P Sbjct: 65 DEAMMKKYVTEIPADAQKLIDYFWPGPLTLIL-FIKKGALPDAVTGGLPTAAFRCPQDPL 123 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 T +LI+T P+ PSAN S + S T +H+ + +I IID G +KIGLESTI+++ Sbjct: 124 TNELIQTLARPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDNGPTKIGLESTIIDL 182 Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 ++ V +LRPG + + L + ++ + V P++PGM HYAP S V + Sbjct: 183 SVDQPV-VLRPGEITPDELSEVLHKKVLLNKGTVQTKDVPKAPGMKYRHYAPSSPVYIVD 241 Query: 241 IHVN----PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD-DSGAS 295 + P ++ + + N+ + + + S + EAA NLF ++ D + Sbjct: 242 DPADFAYIPHDSSVGVAALA-DNLHDLGDADSFSLGVSIDEAAHNLFGALRYFDSNEQIK 300 Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321 +I + A NRL +AA+ Sbjct: 301 TIYVQGFAKGNISAAYMNRLNKAASG 326 >gi|313888752|ref|ZP_07822414.1| Sua5/YciO/YrdC/YwlC family protein [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845229|gb|EFR32628.1| Sua5/YciO/YrdC/YwlC family protein [Peptoniphilus harei ACS-146-V-Sch2b] Length = 351 Score = 328 bits (843), Expect = 5e-88, Method: Composition-based stats. Identities = 99/337 (29%), Positives = 168/337 (49%), Gaps = 26/337 (7%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D ++K + L G + +PTETVYGL + N +++YE K RP+ NPLI H++D Sbjct: 14 DKVYIKKISQTLRDGGLVVLPTETVYGLGGNGLNKRTCKKIYEAKGRPSDNPLILHIADN 73 Query: 68 SMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 S + A V ++ K FWPGPLT++ + + +T L T R P Sbjct: 74 SQLDDLVAEVPEVAKKCIKKFWPGPLTIIFKR--SDKVPDEATGGLDTVAIREPSNKIAH 131 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 ++++ P+A PSAN SG+ S T V+H++ + + +I+DGG S +G+EST+++V Sbjct: 132 DILKSVDFPVAAPSANLSGRPSPTKVEHVI-EDLDGRVDIIVDGGHSVVGIESTVLDVTV 190 Query: 186 EKKVRILRPGGLEIETLKRA---ISVELEYCVDET-STPQSPGMLKSHYAPRSQVRLRAI 241 + + ILRPG + +E L+ I+++ ++ P+SPG HYAPR++ Sbjct: 191 DPPM-ILRPGKITLENLQEVDERITIDSATIDSKSHEVPKSPGQKYRHYAPRAEAICFGG 249 Query: 242 HVNPREALIRFGNVPIKNIENAIIS----------------LNLSKTGKLKEAAFNLFNY 285 ++ I+ K + A+++ +NL L+E A NLF+ Sbjct: 250 RLDKLINEIKKNIEENKGKKIAVLATEETYDEYENTGVELLINLGSREHLEEVATNLFDA 309 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 ++ D+ I G+G++I NRL +A + Sbjct: 310 LRRCDEEDIDIIFAEGFELRGMGLSIMNRLLKACGGK 346 >gi|302872090|ref|YP_003840726.1| Sua5/YciO/YrdC/YwlC family protein [Caldicellulosiruptor obsidiansis OB47] gi|302574949|gb|ADL42740.1| Sua5/YciO/YrdC/YwlC family protein [Caldicellulosiruptor obsidiansis OB47] Length = 348 Score = 328 bits (843), Expect = 6e-88, Method: Composition-based stats. Identities = 110/336 (32%), Positives = 159/336 (47%), Gaps = 25/336 (7%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 D L KA L G +A PTETVYGL ++ A+ +++ K RP NPLI H+S Sbjct: 11 IDYEKLEKAALILREGGLVAFPTETVYGLGANALLKDAVDKIFWAKGRPQDNPLIVHISS 70 Query: 67 ISMVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 M++ A + D L + FWPGPLT+VL + TA L T R+P Sbjct: 71 KEMLEMCAEITDEKVYVLIERFWPGPLTIVLP--KKNVVADNVTAGLSTVGVRMPANKIA 128 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 +LI G P+A PSAN SG+ S T KH++ + ++ +IIDGG GLEST+V++ Sbjct: 129 LELIRLSGVPVAAPSANVSGKPSPTEAKHVI-EDLMNKVDVIIDGGKCSFGLESTVVDLS 187 Query: 185 CEKKVRILRPGGLEIETLKRAIS-VELEYCVDE---TSTPQSPGMLKSHYAPRSQVRLRA 240 + V ILRPG + LK + +E V E S P+SPGM HYAP +++ + Sbjct: 188 GGEAV-ILRPGAISYYALKEVLGNIEYSKAVVEGLSGSVPRSPGMKYKHYAPDAKLIIVK 246 Query: 241 IHVNPREALI--RFGNVPIKNIENAIISLN-------------LSKTGKLKEAAFNLFNY 285 ++ R I + +K I+ L KE NLF+ Sbjct: 247 GRIDKRIDKINEMKKKLELKGYRVGILCFYETAHNFDSQYKLILGSMFDAKECGRNLFSL 306 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 ++ + G I + +A+ NRL +AAA Sbjct: 307 LRKFNQLGVDYILCEWGEFNLEFLALENRLYKAAAN 342 >gi|212697122|ref|ZP_03305250.1| hypothetical protein ANHYDRO_01688 [Anaerococcus hydrogenalis DSM 7454] gi|212675897|gb|EEB35504.1| hypothetical protein ANHYDRO_01688 [Anaerococcus hydrogenalis DSM 7454] Length = 345 Score = 328 bits (843), Expect = 6e-88, Method: Composition-based stats. Identities = 111/341 (32%), Positives = 172/341 (50%), Gaps = 25/341 (7%) Query: 2 QIMSI----TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 +I+ I D N L+ A + + G +A PTETVYGL D NP A R++++ K RP Sbjct: 4 EILKIDRENVDENILKHAAKIIKNGDLVAFPTETVYGLGADGLNPEASRKIFKAKNRPED 63 Query: 58 NPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 NPLI H+ + + + VD + L K WPGPLT++L ++ I + T T Sbjct: 64 NPLILHIDEDYKLDELVEEVDDRTKFLIKNLWPGPLTVIL--KKSSKIPDIITGGGDTVA 121 Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R P ++ I+ P+A PSAN SG+ S TN K + + IPLIIDGG S IG Sbjct: 122 VRRPKDKLAREFIKFCNRPIAAPSANISGRPSPTNAKDVFYD-MDGRIPLIIDGGSSDIG 180 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPR 233 +EST++++ E ILRPG E +K+ I + VD+T P+SPG HYAP+ Sbjct: 181 IESTVIDMSLENPC-ILRPGYYTYEYIKKFIPNVCLDDSLVDDTKVPRSPGQKYKHYAPK 239 Query: 234 SQV----------RLRAIHVNPREALIRFGNVPIKNIE---NAIISLNLSKTGKLKEAAF 280 +Q+ ++ + + + + G + ++ I+L+L L E + Sbjct: 240 AQMKVFVGEKSVEKINDLALKYKNDGKKVGILVFNKYTEKFSSYITLSLGDKENLIEMSH 299 Query: 281 NLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 LF ++ D G I + GLG +I NR++++A+ Sbjct: 300 VLFEALRDLDRKGVDIILAQGVEEIGLGKSIMNRMKKSASG 340 >gi|229545078|ref|ZP_04433803.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX1322] gi|229309970|gb|EEN75957.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX1322] Length = 340 Score = 328 bits (842), Expect = 7e-88, Method: Composition-based stats. Identities = 103/316 (32%), Positives = 171/316 (54%), Gaps = 21/316 (6%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLS 80 G +A PTETVYGL D+ N A++++Y++K RP+ NPLI HV+++ MVKK+ A++ ++ Sbjct: 21 GELVAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVA 80 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPLAIPS 139 L FWPGPLTL+ + + + T L+T FR+P LIE PL PS Sbjct: 81 TKLVSAFWPGPLTLIFN-VPSDTFSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPS 139 Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC-EKKVRILRPGGLE 198 AN SG+ S T+ +H+ + +I I+D G ++IG+EST++++ + ILRPG + Sbjct: 140 ANTSGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAIT 198 Query: 199 IETLKRAIS-VELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVP 256 E L+ I V+++ + + ET+ P++PGM HY+P ++V + + +A I+ Sbjct: 199 KEQLESIIPQVKIDTHLISETAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQAKEQ 258 Query: 257 IKNI-------------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303 + I + + ++ A LF ++ D+ GA++I Sbjct: 259 QEKIGLFLSDKQAAQLDTENVFVYSYGAE-TVENATKELFAGLRALDEQGATTIFAQGFA 317 Query: 304 NHGLGIAINNRLERAA 319 GLG A NRL+++A Sbjct: 318 ETGLGTAYMNRLKKSA 333 >gi|157826326|ref|YP_001494046.1| hypothetical protein A1C_06575 [Rickettsia akari str. Hartford] gi|157800284|gb|ABV75538.1| hypothetical protein A1C_06575 [Rickettsia akari str. Hartford] Length = 312 Score = 328 bits (842), Expect = 7e-88, Method: Composition-based stats. Identities = 121/315 (38%), Positives = 175/315 (55%), Gaps = 13/315 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + KA +F+ +G + PTETVYG+ D+ N A ++++ K RPA NPLI HV I K Sbjct: 2 VSKAVQFIKSGKVVVFPTETVYGIGADATNNEACLKIFQFKNRPASNPLIVHVFSIEQAK 61 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIET 130 + + L++ +A+ FW GPL++V+ L +I P + A L T R+P +LI Sbjct: 62 EIGEFNDLAIKIAEKFWSGPLSIVVPLKENANIAPSAAAGLNTIALRIPSYPVALELIRQ 121 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI--SKIGLESTIVNVQCEKK 188 G P+A PSAN S IS TN +H+ + I+ I S+ GLESTI++ Sbjct: 122 SGVPIAAPSANPSNYISPTNAEHVTKHFKDNQEIFILAPEIYQSEYGLESTIIDTTTATP 181 Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248 ILR G + +E L+ + V++ ETS ++PGML HY+P+ +RL AI++ E Sbjct: 182 -TILREGFITVEILEEVLRVKV-LKASETSAIKAPGMLAKHYSPKVPIRLNAINLEYNEI 239 Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD----SGASSIAFSSIPN 304 + FGN + SLNLS G L EAA NL+ Y++I DD S IA + IP Sbjct: 240 SVNFGNSNL----TGRFSLNLSTKGNLIEAAANLYAYLRILDDYAAAHDVSGIAVAPIPQ 295 Query: 305 HGLGIAINNRLERAA 319 +G AIN+RL+RAA Sbjct: 296 ENIGAAINDRLKRAA 310 >gi|256961205|ref|ZP_05565376.1| Sua5/YciO/YrdC/YwlC [Enterococcus faecalis Merz96] gi|293384154|ref|ZP_06630048.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis R712] gi|293386968|ref|ZP_06631537.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis S613] gi|312907895|ref|ZP_07766878.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis DAPTO 512] gi|312978576|ref|ZP_07790314.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis DAPTO 516] gi|256951701|gb|EEU68333.1| Sua5/YciO/YrdC/YwlC [Enterococcus faecalis Merz96] gi|291078634|gb|EFE15998.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis R712] gi|291083638|gb|EFE20601.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis S613] gi|310625986|gb|EFQ09269.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis DAPTO 512] gi|311288725|gb|EFQ67281.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis DAPTO 516] gi|315161812|gb|EFU05829.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0645] Length = 340 Score = 328 bits (842), Expect = 7e-88, Method: Composition-based stats. Identities = 106/317 (33%), Positives = 175/317 (55%), Gaps = 23/317 (7%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLS 80 G +A PTETVYGL D+ N A++++Y++K RP+ NPLI HV+++ MVKK+ A++ ++ Sbjct: 21 GELVAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVA 80 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPLAIPS 139 L FWPGPLTL+ + + + T L+T FR+P LIE PL PS Sbjct: 81 TKLVSAFWPGPLTLIFN-VPSDTFSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPS 139 Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC-EKKVRILRPGGLE 198 AN SG+ S T+ +H+ + +I I+D G ++IG+EST++++ + ILRPG + Sbjct: 140 ANTSGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAIT 198 Query: 199 IETLKRAIS-VELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFG--- 253 E L+ IS V+++ + + E + P++PGM HY+P ++V + + +A I+ Sbjct: 199 KEQLESIISQVKIDTHLISENAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQATEQ 258 Query: 254 -----------NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302 + ENA + ++T ++ A LF ++ D+ GA++I Sbjct: 259 QEKIGLFLSDEQAAQLDTENAFVYSYGAET--VENATKELFAGLRALDEQGATTIFAQGF 316 Query: 303 PNHGLGIAINNRLERAA 319 GLG A NRL+++A Sbjct: 317 AETGLGTAYMNRLKKSA 333 >gi|126701105|ref|YP_001090002.1| hypothetical protein CD3482 [Clostridium difficile 630] gi|260685001|ref|YP_003216286.1| hypothetical protein CD196_3272 [Clostridium difficile CD196] gi|260688659|ref|YP_003219793.1| hypothetical protein CDR20291_3318 [Clostridium difficile R20291] gi|260211164|emb|CBA66618.1| conserved hypothetical protein [Clostridium difficile CD196] gi|260214676|emb|CBE07311.1| conserved hypothetical protein [Clostridium difficile R20291] Length = 353 Score = 328 bits (842), Expect = 7e-88, Method: Composition-based stats. Identities = 95/331 (28%), Positives = 159/331 (48%), Gaps = 22/331 (6%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 ++ + L G + PTETVYGL ++ + A++++YE K RP+ NPLI H+ + Sbjct: 23 EEIKIQAKLLREGKTVIFPTETVYGLGANALDENAVKKIYEAKGRPSDNPLIVHIYEKEE 82 Query: 70 VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 V A + + + + WPGP+T++L+ I ++ L T R+P + + Sbjct: 83 VYDLAKDISDKAKLVIEKLWPGPITIILN--KKDIIPYKTSGGLDTVAIRMPSNVIARAI 140 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I+ G P+A PSAN SG+ S T KH+ + + I+ GG S GLEST++++ E+ Sbjct: 141 IKEAGIPIAAPSANISGRPSPTKAKHVY-EEMNGRVDGIVLGGDSNFGLESTVLDLT-EE 198 Query: 188 KVRILRPGGLEIETLKRAIS-VELEYCVDETS---TPQSPGMLKSHYAPRSQVRLRAIHV 243 ILRPG + E L+ + V+L+ + + ++PGM HY+P + V + + Sbjct: 199 TPMILRPGSITKEVLEELLGEVKLDPSLSKKEDNQKAKAPGMKYKHYSPNADVYIISGKR 258 Query: 244 N------------PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291 R+ ++ G + I + L+E A NLF+ + D Sbjct: 259 ENVATKINDMIKSNRDKGLKTGVMCISRNREFYDGEVIDLGNSLEEVASNLFDALIEMDK 318 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 G I P G+G AI NRL ++A + Sbjct: 319 KGVDVIYSEEFPKTGVGQAIMNRLLKSAGYK 349 >gi|309808063|ref|ZP_07701981.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LactinV 01V1-a] gi|308168665|gb|EFO70765.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LactinV 01V1-a] Length = 331 Score = 328 bits (842), Expect = 8e-88, Method: Composition-based stats. Identities = 106/326 (32%), Positives = 168/326 (51%), Gaps = 14/326 (4%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I + + +++A + L G +A PTETVYGL D+ N A++ +Y K RP+ NPLI V+ Sbjct: 5 IFNKDNIKQAAQLLAQGELVAFPTETVYGLGADATNEEAVKNVYRAKGRPSDNPLIVTVA 64 Query: 66 DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123 D +M+KK+ + + L FWPGPLTL+L + + T L TA FR P Sbjct: 65 DEAMMKKYVTEIPADAQKLIDYFWPGPLTLILFIKEGA-LPDAVTGGLPTAAFRCPQDPL 123 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 T +LI+T P+ PSAN S + S T +H+ + +I IID G +KIGLESTI+++ Sbjct: 124 TNELIQTLARPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDNGPTKIGLESTIIDL 182 Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 ++ V +LRPG + + L + ++ + V P++PGM HYAP S V + Sbjct: 183 SVDQPV-VLRPGEITPDELSEVLHKKVLLNKGTVQTKDVPKAPGMKYRHYAPSSPVYIVD 241 Query: 241 IHVN----PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD-DSGAS 295 + P ++ + + N+ + + + S + EAA NLF ++ D + Sbjct: 242 DPADFAYIPHDSSVGVAALA-DNLHDLGDADSFSLGVSIDEAAHNLFGALRYFDSNEQIK 300 Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321 +I + A NRL +AA+ Sbjct: 301 TIYVQGFAKGNISAAYMNRLNKAASG 326 >gi|126459742|ref|YP_001056020.1| translation factor SUA5 [Pyrobaculum calidifontis JCM 11548] gi|126249463|gb|ABO08554.1| translation factor SUA5 [Pyrobaculum calidifontis JCM 11548] Length = 342 Score = 328 bits (842), Expect = 8e-88, Method: Composition-based stats. Identities = 102/329 (31%), Positives = 163/329 (49%), Gaps = 16/329 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + +++A E L G +A PTETVYGL + + R+++++K+RP NPLI HV + Sbjct: 11 DPDVVKRAAEVLRRGGVVAAPTETVYGLFAHAYSEAGCRKVFQVKRRPMDNPLIVHVDSV 70 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KK 126 M + A + P + + WPGP+T+V+ + TA L T R P Sbjct: 71 EMAETVAYIPPELRDILRRVWPGPITVVVKSRGV--LPRCVTAGLDTVAVRAPAHPIPLA 128 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 +I G P+A PSANR+G+ S T +H+L + E+ LI+DGG + G+ESTIV+V Sbjct: 129 IIRELGAPIAGPSANRAGRPSPTTAEHVL-EDLGDEVDLIVDGGPTFFGVESTIVDVTRT 187 Query: 187 KKVRILRPGGLEIETLKRAIS----VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242 V +LRPG +E L++ + + E +PGM HYAP + + + Sbjct: 188 PPV-LLRPGPFTVEELEKFFGRVEVPPVARGLAEADVALAPGMKYRHYAPETPLVIVHFD 246 Query: 243 VNPREAL-----IRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297 + +R + + A ++ L G L EAA NL++ ++ D G Sbjct: 247 LEEAVKWLEARGLRVAVLCVGECPKAKRTIPLG--GDLYEAAKNLYDALRQLDKLGVDIG 304 Query: 298 AFSSIPNHGLGIAINNRLERAAAPRNQSQ 326 ++ G+G+AI NRL +A+ R + Sbjct: 305 VVPAVEERGIGLAIMNRLRKASGHREARR 333 >gi|254977106|ref|ZP_05273578.1| hypothetical protein CdifQC_17418 [Clostridium difficile QCD-66c26] gi|255094434|ref|ZP_05323912.1| hypothetical protein CdifC_17521 [Clostridium difficile CIP 107932] gi|255102691|ref|ZP_05331668.1| hypothetical protein CdifQCD-6_17911 [Clostridium difficile QCD-63q42] gi|255308512|ref|ZP_05352683.1| hypothetical protein CdifA_18121 [Clostridium difficile ATCC 43255] gi|255316186|ref|ZP_05357769.1| hypothetical protein CdifQCD-7_17609 [Clostridium difficile QCD-76w55] gi|255518847|ref|ZP_05386523.1| hypothetical protein CdifQCD-_17148 [Clostridium difficile QCD-97b34] gi|255652026|ref|ZP_05398928.1| hypothetical protein CdifQCD_17710 [Clostridium difficile QCD-37x79] gi|306521768|ref|ZP_07408115.1| hypothetical protein CdifQ_20080 [Clostridium difficile QCD-32g58] gi|328887821|emb|CAJ70385.2| putative RNA-binding protein [Clostridium difficile] Length = 346 Score = 328 bits (841), Expect = 8e-88, Method: Composition-based stats. Identities = 95/331 (28%), Positives = 159/331 (48%), Gaps = 22/331 (6%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 ++ + L G + PTETVYGL ++ + A++++YE K RP+ NPLI H+ + Sbjct: 16 EEIKIQAKLLREGKTVIFPTETVYGLGANALDENAVKKIYEAKGRPSDNPLIVHIYEKEE 75 Query: 70 VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 V A + + + + WPGP+T++L+ I ++ L T R+P + + Sbjct: 76 VYDLAKDISDKAKLVIEKLWPGPITIILN--KKDIIPYKTSGGLDTVAIRMPSNVIARAI 133 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I+ G P+A PSAN SG+ S T KH+ + + I+ GG S GLEST++++ E+ Sbjct: 134 IKEAGIPIAAPSANISGRPSPTKAKHVY-EEMNGRVDGIVLGGDSNFGLESTVLDLT-EE 191 Query: 188 KVRILRPGGLEIETLKRAIS-VELEYCVDETS---TPQSPGMLKSHYAPRSQVRLRAIHV 243 ILRPG + E L+ + V+L+ + + ++PGM HY+P + V + + Sbjct: 192 TPMILRPGSITKEVLEELLGEVKLDPSLSKKEDNQKAKAPGMKYKHYSPNADVYIISGKR 251 Query: 244 N------------PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291 R+ ++ G + I + L+E A NLF+ + D Sbjct: 252 ENVATKINDMIKSNRDKGLKTGVMCISRNREFYDGEVIDLGNSLEEVASNLFDALIEMDK 311 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 G I P G+G AI NRL ++A + Sbjct: 312 KGVDVIYSEEFPKTGVGQAIMNRLLKSAGYK 342 >gi|302191109|ref|ZP_07267363.1| hypothetical protein LineA_03797 [Lactobacillus iners AB-1] gi|312873862|ref|ZP_07733905.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LEAF 2052A-d] gi|325913035|ref|ZP_08175408.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners UPII 60-B] gi|311090644|gb|EFQ49045.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LEAF 2052A-d] gi|325477715|gb|EGC80854.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners UPII 60-B] Length = 331 Score = 328 bits (841), Expect = 8e-88, Method: Composition-based stats. Identities = 106/326 (32%), Positives = 167/326 (51%), Gaps = 14/326 (4%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I + + +++A + L G +A PTETVYGL D+ N A++ +Y K RP+ NPLI V+ Sbjct: 5 IFNKDNIKQAAQLLAQGELVAFPTETVYGLGADATNEEAVKNVYRAKGRPSDNPLIVTVA 64 Query: 66 DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123 D +M+KK+ + + L FWPGPLTL+L + + T L TA FR P Sbjct: 65 DEAMMKKYVTEIPADAQKLIDHFWPGPLTLIL-FVKEGALPDAVTGGLPTAAFRCPQDPL 123 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 T +LI T P+ PSAN S + S T +H+ + +I IID G +KIGLESTI+++ Sbjct: 124 TNELIHTLARPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDNGPTKIGLESTIIDL 182 Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 ++ V +LRPG + + L + ++ + V P++PGM HYAP S V + Sbjct: 183 SVDQPV-VLRPGEITPDELSEVLHKKVLLNKGTVQTKDVPKAPGMKYRHYAPSSPVYIVD 241 Query: 241 IHVN----PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD-DSGAS 295 + P ++ + + N+ + + + S + EAA NLF ++ D + Sbjct: 242 DPADFAYIPHDSSVGVAALA-DNLHDLGDADSFSLGVSIDEAAHNLFGALRYFDSNEQIK 300 Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321 +I + A NRL +AA+ Sbjct: 301 TIYVQGFAKGNISAAYMNRLNKAASG 326 >gi|315032689|gb|EFT44621.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0017] gi|315143716|gb|EFT87732.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX2141] Length = 340 Score = 328 bits (841), Expect = 8e-88, Method: Composition-based stats. Identities = 105/315 (33%), Positives = 174/315 (55%), Gaps = 19/315 (6%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLS 80 G +A PTETVYGL D+ N A++++Y++K RP+ NPLI HV+++ MVKK+ A++ ++ Sbjct: 21 GELVAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVA 80 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPLAIPS 139 L FWPGPLTL+ + + + T L+T FR+P LIE PL PS Sbjct: 81 TKLVSAFWPGPLTLIFN-VPSDTFSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPS 139 Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC-EKKVRILRPGGLE 198 AN SG+ S T+ +H+ + +I I+D G ++IG+EST++++ + ILRPG + Sbjct: 140 ANTSGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAIT 198 Query: 199 IETLKRAIS-VELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVP 256 E L+ I V+++ + + ET+ P++PGM HY+P ++V + + +A I+ Sbjct: 199 KEQLESIIPQVKIDTHLISETAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQAKEQ 258 Query: 257 IKNI-----ENAIISLN-----LSKTG--KLKEAAFNLFNYMKIADDSGASSIAFSSIPN 304 + I + L+ + G ++ A LF ++ D+ GA++I Sbjct: 259 QEKIGLFLSDEQAAQLDTENTFVYSYGAETVENATKELFAGLRALDEQGATTIFAQGFAE 318 Query: 305 HGLGIAINNRLERAA 319 GLG A NRL+++A Sbjct: 319 TGLGTAYMNRLKKSA 333 >gi|257081920|ref|ZP_05576281.1| translation factor SUA5 [Enterococcus faecalis E1Sol] gi|307287619|ref|ZP_07567662.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0109] gi|256989950|gb|EEU77252.1| translation factor SUA5 [Enterococcus faecalis E1Sol] gi|306501357|gb|EFM70660.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0109] gi|315165016|gb|EFU09033.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX1302] Length = 340 Score = 328 bits (841), Expect = 9e-88, Method: Composition-based stats. Identities = 103/316 (32%), Positives = 171/316 (54%), Gaps = 21/316 (6%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLS 80 G +A PTETVYGL D+ N A++++Y++K RP+ NPLI HV+++ MVKK+ A++ ++ Sbjct: 21 GELVAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVA 80 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPLAIPS 139 L FWPGPLTL+ + + + T L+T FR+P LIE PL PS Sbjct: 81 TKLVSAFWPGPLTLIFN-VPSDTFSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPS 139 Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC-EKKVRILRPGGLE 198 AN SG+ S T+ +H+ + +I I+D G ++IG+EST++++ + ILRPG + Sbjct: 140 ANTSGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAIT 198 Query: 199 IETLKRAIS-VELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVP 256 E L+ I V+++ + + ET+ P++PGM HY+P ++V + + +A I+ Sbjct: 199 KEQLESIIPQVKIDTHLISETAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQATEQ 258 Query: 257 IKNI-------------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303 + I + + ++ A LF ++ D+ GA++I Sbjct: 259 QEKIGLFLSDKQAAQLDTENVFVYSYGAE-TVENATKELFAGLRALDEQGATTIFAQGFA 317 Query: 304 NHGLGIAINNRLERAA 319 GLG A NRL+++A Sbjct: 318 ETGLGTAYMNRLKKSA 333 >gi|325847835|ref|ZP_08170057.1| Sua5/YciO/YrdC/YwlC family protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480853|gb|EGC83906.1| Sua5/YciO/YrdC/YwlC family protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 345 Score = 328 bits (841), Expect = 9e-88, Method: Composition-based stats. Identities = 110/341 (32%), Positives = 172/341 (50%), Gaps = 25/341 (7%) Query: 2 QIMSI----TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 +I+ I D N L+ A + + G +A PTETVYGL D NP A R++++ K RP Sbjct: 4 EILKIDRENVDENILKHAAKIIKNGDLVAFPTETVYGLGADGLNPEASRKIFKAKNRPED 63 Query: 58 NPLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 NPLI H+ + + + VD + L K WPGPLT++L ++ I + T T Sbjct: 64 NPLILHIDEDYKLDELVEKVDERTKFLIKNLWPGPLTVIL--KKSSKIPDIITGGGDTVA 121 Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R P ++ I+ P+A PSAN SG+ S TN K + + IPLIIDGG S IG Sbjct: 122 VRRPKDKLAREFIKFCDRPIAAPSANISGRPSPTNAKDVFYD-MNGRIPLIIDGGSSDIG 180 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPR 233 +EST++++ E ILRPG E +K+ I + +D+T P+SPG HYAP+ Sbjct: 181 IESTVIDMSLENPC-ILRPGYYTYEYIKKFIPNVCLDDSLLDDTKVPRSPGQKYKHYAPK 239 Query: 234 SQV----------RLRAIHVNPREALIRFGNVPIKNIE---NAIISLNLSKTGKLKEAAF 280 +Q+ ++ + + + + G + ++ I+L+L L E + Sbjct: 240 AQMKVFVGEKSVEKINDLALKYKNDGKKVGILVFNKYTEKFSSYITLSLGDKENLIEMSH 299 Query: 281 NLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 LF ++ D G I + GLG +I NR++++A+ Sbjct: 300 VLFEALRDLDRKGVDIILAQGVEEIGLGKSIMNRMKKSASG 340 >gi|166033062|ref|ZP_02235891.1| hypothetical protein DORFOR_02784 [Dorea formicigenerans ATCC 27755] gi|166027419|gb|EDR46176.1| hypothetical protein DORFOR_02784 [Dorea formicigenerans ATCC 27755] Length = 353 Score = 328 bits (841), Expect = 9e-88, Method: Composition-based stats. Identities = 104/334 (31%), Positives = 167/334 (50%), Gaps = 25/334 (7%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A +FL G +A PTETVYGL D+ N TA ++Y K RP+ NPLI H++++ Sbjct: 19 KKIIGQAGDFLKEGGLVAFPTETVYGLGADALNKTASTKIYAAKGRPSDNPLIVHITNMG 78 Query: 69 MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126 + K A + P + +A +WPGPLT++ T ++ +T L T R+P + Sbjct: 79 ALDKIADIIPEVAYKVADAYWPGPLTMIFQ--KTEEVPYETTGGLDTVAVRMPSDEIARA 136 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LI+ G +A PSAN SG+ S T +H+ + +I +I+DGG IG+ESTI+++ Sbjct: 137 LIDAGGGYIAAPSANTSGRPSPTKAEHV-EEDLSGKIEMILDGGAVDIGVESTILDMTVT 195 Query: 187 KKVRILRPGGLEIETLKRAIS-VELEYCV---DETSTPQSPGMLKSHYAPR--------- 233 + ILRPG + E L I V+++ + D P++PGM HYAP+ Sbjct: 196 PPM-ILRPGAITKEMLTELIGEVDIDRTLITPDSKVKPKAPGMKYRHYAPKADLSIVEGP 254 Query: 234 SQVRLRAIHVNPREALIRFGNVPIKNI------ENAIISLNLSKTGKLKEAAFNLFNYMK 287 ++ + AI+ E + + V + A + ++ A +L+ ++ Sbjct: 255 MELVIDAINQMSAERMAKGHRVGVIGTQETVGRYKADVVKSIGTRADEATIANHLYAVLR 314 Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 DD+ I S G+G AI NRL +AA Sbjct: 315 EFDDAEVEYIYSESFAAGGIGSAIMNRLLKAAGH 348 >gi|320100446|ref|YP_004176038.1| translation factor SUA5 [Desulfurococcus mucosus DSM 2162] gi|319752798|gb|ADV64556.1| translation factor SUA5 [Desulfurococcus mucosus DSM 2162] Length = 357 Score = 328 bits (841), Expect = 9e-88, Method: Composition-based stats. Identities = 102/340 (30%), Positives = 165/340 (48%), Gaps = 31/340 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + KA E L +A PTETVYGL + A+ ++++ K RP NPLI HVS + Sbjct: 13 DKEVIDKAAEILLNRGLVAFPTETVYGLGAVAYYEDAVLKVFKAKMRPPDNPLIIHVSSL 72 Query: 68 SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125 M+ + A+ + + L + FWPGPLTL+L + I + T L T R+P Sbjct: 73 DMLNEVATGIPDDAYRLIEKFWPGPLTLILPRHPS--IPRVVTGGLDTVAVRMPGHPVAL 130 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 KLI+ G P+A PSAN SG+ S T +H++ + + IID G + G+EST+VN+ Sbjct: 131 KLIDATGRPVAAPSANISGRPSPTTGEHVIRD-LMGRVDAIIDAGETFFGVESTVVNILE 189 Query: 186 EKKVRILRPGGLEIETLKRAISVEL-----EYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 + V +LRPG +E +++A+ ++ + + +PGM HY+P +++ L Sbjct: 190 DPPV-LLRPGAYPVEEVEKALGKKIVIPEFARGLAYSEIALAPGMKYRHYSPEAKLILVE 248 Query: 241 IHVNPREALIRFGNVP--------------------IKNIENAIISLNLSKTGKLKEAAF 280 + R +++ N L L E A Sbjct: 249 AEGSYEYIAGRVIEAARSLGGVGELCVISSSETMHYYRSLSNVKAVFTLGSRVNLYEVAR 308 Query: 281 NLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 NLF +++ D++G + S P G+G+A+ NRL +A++ Sbjct: 309 NLFKVLRLVDEAGCRVVFSESFPETGIGLAVMNRLRKASS 348 >gi|255975088|ref|ZP_05425674.1| translation factor SUA5 [Enterococcus faecalis T2] gi|307285599|ref|ZP_07565738.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0860] gi|255967960|gb|EET98582.1| translation factor SUA5 [Enterococcus faecalis T2] gi|306502823|gb|EFM72088.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0860] Length = 340 Score = 328 bits (841), Expect = 9e-88, Method: Composition-based stats. Identities = 102/316 (32%), Positives = 170/316 (53%), Gaps = 21/316 (6%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLS 80 G +A PTETVYGL D+ N A++++Y++K RP+ NPLI HV+++ MVKK+ A++ ++ Sbjct: 21 GELVAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVA 80 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPLAIPS 139 L FWPGPLTL+ + + + T L+T FR+P LIE PL PS Sbjct: 81 TKLVSAFWPGPLTLIFN-VPSDTFSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPS 139 Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC-EKKVRILRPGGLE 198 AN SG+ S T+ +H+ + +I I+D G ++IG+EST++++ + ILRPG + Sbjct: 140 ANTSGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAIT 198 Query: 199 IETLKRAIS-VELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVP 256 E L+ I V+++ + + E + P++PGM HY+P ++V + + +A I+ Sbjct: 199 KEQLESIIPQVKIDTHLISENAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQATEQ 258 Query: 257 IKNI-------------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303 + I + + ++ A LF ++ D+ GA++I Sbjct: 259 QEKIGLFLSDKQAAQLDTENVFVYSYGAE-TVENATKELFAGLRALDEQGATTIFAQGFA 317 Query: 304 NHGLGIAINNRLERAA 319 GLG A NRL+++A Sbjct: 318 ETGLGTAYMNRLKKSA 333 >gi|104773787|ref|YP_618767.1| Sua5 family translation factor [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103422868|emb|CAI97530.1| Putative translation factor (Sua5 family) [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 331 Score = 328 bits (841), Expect = 1e-87, Method: Composition-based stats. Identities = 106/334 (31%), Positives = 160/334 (47%), Gaps = 19/334 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ I L +A L G +A PTETVYGL + +++++Y K RP+ NPL Sbjct: 1 MET-KIFKREQLDEAVSLLREGGLVAFPTETVYGLGALATRDDSVKKVYAAKGRPSDNPL 59 Query: 61 ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I V+D +M++ +A V + L K FWPGPLT++L L + T L T FR Sbjct: 60 IVTVADEAMMRPYAKEVPERAEKLIKHFWPGPLTILL-LAKEGALPESVTGGLPTVAFRC 118 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T LI G+P+ PSAN S + S T +H+ + +I I+DGG +++GLES Sbjct: 119 PDDQLTHDLIAKLGYPIVGPSANTSTKPSPTTAQHVY-HDLKGKIAGIVDGGETEVGLES 177 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQ 235 TIV++ +LRPG + E + + + E+ V + P++PGM HYAP +Q Sbjct: 178 TIVDLSVN-PAVVLRPGKITPEEISQVLGEEVLINRGQVSDKDVPKAPGMKYRHYAPSAQ 236 Query: 236 VRL-------RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKI 288 V + + ++ ++ ++ NL K L EA NLF ++ Sbjct: 237 VYVVDQAETFDKLDLDASCGVMATSDLLENLPVPEENKFNLGK--NLTEADHNLFAGLRY 294 Query: 289 ADDS-GASSIAFSSIPNHGLGIAINNRLERAAAP 321 DD SI +A NRL +AA Sbjct: 295 FDDRPEIKSIYVEGFDQGEESLAYMNRLNKAAGG 328 >gi|15604678|ref|NP_221196.1| hypothetical protein RP848 [Rickettsia prowazekii str. Madrid E] gi|3861373|emb|CAA15272.1| unknown [Rickettsia prowazekii] gi|292572509|gb|ADE30424.1| Sua5/YciO/YrdC/YwlC family putative translation factor protein [Rickettsia prowazekii Rp22] Length = 313 Score = 328 bits (841), Expect = 1e-87, Method: Composition-based stats. Identities = 119/315 (37%), Positives = 172/315 (54%), Gaps = 12/315 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + KA +F+ +G + PTETVYG+ D+ N A ++++ K RPA+NPLI HV+ I K Sbjct: 2 INKAVQFIKSGKVVVFPTETVYGIGADATNNEACLKIFQFKNRPAINPLIVHVTSIVQAK 61 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIET 130 + L+ +A FWPGPL++V+ L +I P TA L T R+P LI Sbjct: 62 AIGEFNKLAEKIASKFWPGPLSIVVPLKDNVNIAPSVTAGLNTIALRIPSYPIALALIRQ 121 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI--SKIGLESTIVNVQCEKK 188 P+A PSAN S IS TN +H+ I+ I + GLESTI++ Sbjct: 122 SVVPIAAPSANPSNYISPTNAEHVTKHFKDNREIFILAPEIYQCEYGLESTIID-TTTVI 180 Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248 ILR G + E L+ + V++ + S ++PGMLK HY+P VRL AI++N +E Sbjct: 181 PTILREGFITSEILEELLGVKILKASEINSIVKAPGMLKKHYSPNVHVRLNAINLNDKEI 240 Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS----SIAFSSIPN 304 + FGN + +LNLS G + EAA NL++Y++I DD S IA + +P Sbjct: 241 GLNFGNSNL----TGKFALNLSTEGNIIEAAANLYSYLRILDDYAVSNDINCIAVAPVPL 296 Query: 305 HGLGIAINNRLERAA 319 +G AIN+RL+RAA Sbjct: 297 TNIGAAINDRLKRAA 311 >gi|312134922|ref|YP_004002260.1| sua5/ycio/yrdc/ywlc family protein [Caldicellulosiruptor owensensis OL] gi|311774973|gb|ADQ04460.1| Sua5/YciO/YrdC/YwlC family protein [Caldicellulosiruptor owensensis OL] Length = 348 Score = 327 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 110/336 (32%), Positives = 157/336 (46%), Gaps = 25/336 (7%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 D L KA L G +A PTETVYGL ++ A+ +++ K RP NPLI H+S Sbjct: 11 IDYEKLEKAASILREGGLVAFPTETVYGLGANALLKDAVDKIFWAKGRPQDNPLIVHISS 70 Query: 67 ISMVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 M+ A + D L + FWPGPLT+VL I TA L T R+P Sbjct: 71 KEMLGMCAEITDERVYMLIERFWPGPLTIVLP--KKNSIPDNVTAGLSTVGVRMPANKIA 128 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 +LI P+A PSAN SG+ S T KH++ + ++ +IIDGG GLEST+V++ Sbjct: 129 LELIRLSDVPVAAPSANVSGKPSPTEAKHVI-EDLMNKVDVIIDGGKCSFGLESTVVDLS 187 Query: 185 CEKKVRILRPGGLEIETLKRAIS-VELEYCVDE---TSTPQSPGMLKSHYAPRSQV---- 236 + V ILRPG + LK + +E V E + P+SPGM HYAP +++ Sbjct: 188 GGEAV-ILRPGAISYYALKEVLGNIEYSKAVVEGLTGTVPRSPGMKYKHYAPDAKLIIVK 246 Query: 237 -----RLRAIHVNPREALIRFGNVPIKNIENAI------ISLNLSKTGKLKEAAFNLFNY 285 R+ I+ ++ + V I L L KE NLF+ Sbjct: 247 GRIDKRIDKINEMKKKLEFKAHRVGILCFYETAHNFDSQYKLILGSMFDAKECGRNLFSL 306 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 ++ + G I + +A+ NRL +AAA Sbjct: 307 LRKFNQLGVDYILCEWGEFNLEFLALENRLYKAAAN 342 >gi|157964998|ref|YP_001499822.1| Sua5/YciO/YrdC/YwlC family translation factor protein [Rickettsia massiliae MTU5] gi|157844774|gb|ABV85275.1| Sua5/YciO/YrdC/YwlC family putative translation factor protein [Rickettsia massiliae MTU5] Length = 312 Score = 327 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 124/315 (39%), Positives = 176/315 (55%), Gaps = 13/315 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + KA +F+ +G + PTETVYG+ D+ N A ++++ K+RPA+NPLI HVS I K Sbjct: 2 INKAVQFIKSGKVVVFPTETVYGIGADATNNEACLKIFQFKERPAINPLIVHVSSIEQAK 61 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIET 130 + ++ L+ +A+ FW GPL++V+ L +I P TA L T R+P +LI Sbjct: 62 EIGELNDLATKIAEKFWSGPLSIVVPLKENANIAPSVTAGLNTIALRIPSYPVALELIRQ 121 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI--SKIGLESTIVNVQCEKK 188 G P+A PSAN + IS TN +H+ + I+ I SK GLESTI++ Sbjct: 122 SGIPIAAPSANPANYISPTNAEHVTKHFKDNQEIFILAPEIYQSKYGLESTIID-TTTVT 180 Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248 ILR G + E L + +E+ ETST ++PGML HY+P+ VRL AI++ +E Sbjct: 181 PTILREGFITAEILGEILGIEV-LKASETSTIKAPGMLAKHYSPKVPVRLNAINLEDKEI 239 Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD----SGASSIAFSSIPN 304 + FGN + SLNLS G EAA NL+ Y++I DD IA S IP Sbjct: 240 GLNFGNSNL----TGRFSLNLSVKGNFIEAAANLYAYLRILDDYAASHDVRGIAVSPIPQ 295 Query: 305 HGLGIAINNRLERAA 319 +G AIN+RL+RAA Sbjct: 296 VNIGAAINDRLKRAA 310 >gi|327535786|gb|AEA94620.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis OG1RF] Length = 340 Score = 327 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 107/317 (33%), Positives = 176/317 (55%), Gaps = 23/317 (7%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLS 80 G +A PTETVYGL D+ N A++++Y++K RP+ NPLI HV+++ MVKK+ A++ ++ Sbjct: 21 GELVAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVA 80 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPLAIPS 139 L FWPGPLTL+ + + + T L+T FR+P LIE PL PS Sbjct: 81 TKLVSAFWPGPLTLIFN-VPSDTFSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPS 139 Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC-EKKVRILRPGGLE 198 AN SG+ S T+ +H+ + +I I+D G ++IG+EST++++ + ILRPG + Sbjct: 140 ANTSGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAIT 198 Query: 199 IETLKRAIS-VELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVP 256 E L+ I V+++ + + ET+ P++PGM HY+P ++V + + +A I+ Sbjct: 199 KEQLESIIPQVKIDTHLISETAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQAKEQ 258 Query: 257 IKNI--------------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302 + I ENA + ++T ++ A LF ++ D+ GA++I Sbjct: 259 QEKIGLFLSDEQAAQLDTENAFVYSYGAET--VENATKELFAGLRALDEQGATTIFAQGF 316 Query: 303 PNHGLGIAINNRLERAA 319 GLG A NRL+++A Sbjct: 317 AETGLGTAYMNRLKKSA 333 >gi|29377040|ref|NP_816194.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis V583] gi|227554050|ref|ZP_03984097.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis HH22] gi|229549322|ref|ZP_04438047.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis ATCC 29200] gi|255972031|ref|ZP_05422617.1| translation factor SUA5 [Enterococcus faecalis T1] gi|256763195|ref|ZP_05503775.1| translation factor SUA5 [Enterococcus faecalis T3] gi|256957796|ref|ZP_05561967.1| translation factor SUA5 [Enterococcus faecalis DS5] gi|256963676|ref|ZP_05567847.1| translation factor SUA5 [Enterococcus faecalis HIP11704] gi|257079734|ref|ZP_05574095.1| translation factor SUA5 [Enterococcus faecalis JH1] gi|257084462|ref|ZP_05578823.1| translation factor SUA5 [Enterococcus faecalis Fly1] gi|257419963|ref|ZP_05596957.1| translation factor SUA5 [Enterococcus faecalis T11] gi|294779686|ref|ZP_06745076.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis PC1.1] gi|300860679|ref|ZP_07106766.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TUSoD Ef11] gi|307271622|ref|ZP_07552893.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0855] gi|312953586|ref|ZP_07772423.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0102] gi|29344506|gb|AAO82264.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis V583] gi|227176798|gb|EEI57770.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis HH22] gi|229305559|gb|EEN71555.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis ATCC 29200] gi|255963049|gb|EET95525.1| translation factor SUA5 [Enterococcus faecalis T1] gi|256684446|gb|EEU24141.1| translation factor SUA5 [Enterococcus faecalis T3] gi|256948292|gb|EEU64924.1| translation factor SUA5 [Enterococcus faecalis DS5] gi|256954172|gb|EEU70804.1| translation factor SUA5 [Enterococcus faecalis HIP11704] gi|256987764|gb|EEU75066.1| translation factor SUA5 [Enterococcus faecalis JH1] gi|256992492|gb|EEU79794.1| translation factor SUA5 [Enterococcus faecalis Fly1] gi|257161791|gb|EEU91751.1| translation factor SUA5 [Enterococcus faecalis T11] gi|294453240|gb|EFG21652.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis PC1.1] gi|300849718|gb|EFK77468.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TUSoD Ef11] gi|306511500|gb|EFM80499.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0855] gi|310628424|gb|EFQ11707.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0102] gi|315035854|gb|EFT47786.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0027] gi|315151853|gb|EFT95869.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0031] gi|315159266|gb|EFU03283.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0312] gi|315170193|gb|EFU14210.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX1342] gi|315172488|gb|EFU16505.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX1346] gi|315574710|gb|EFU86901.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0309B] gi|315580978|gb|EFU93169.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0309A] gi|323481492|gb|ADX80931.1| SUA5 domain protein [Enterococcus faecalis 62] gi|329578088|gb|EGG59501.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX1467] Length = 340 Score = 327 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 107/317 (33%), Positives = 176/317 (55%), Gaps = 23/317 (7%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLS 80 G +A PTETVYGL D+ N A++++Y++K RP+ NPLI HV+++ MVKK+ A++ ++ Sbjct: 21 GELVAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVA 80 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPLAIPS 139 L FWPGPLTL+ + + + T L+T FR+P LIE PL PS Sbjct: 81 TKLVSAFWPGPLTLIFN-VPSDTFSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPS 139 Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC-EKKVRILRPGGLE 198 AN SG+ S T+ +H+ + +I I+D G ++IG+EST++++ + ILRPG + Sbjct: 140 ANTSGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAIT 198 Query: 199 IETLKRAIS-VELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVP 256 E L+ I V+++ + + ET+ P++PGM HY+P ++V + + +A I+ Sbjct: 199 KEQLESIIPQVKIDTHLISETAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQAKEQ 258 Query: 257 IKNI--------------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302 + I ENA + ++T ++ A LF ++ D+ GA++I Sbjct: 259 QEKIGLFLSDEQAAQLDTENAFVYSYGAET--VENATKELFAGLRALDEQGATTIFAQGF 316 Query: 303 PNHGLGIAINNRLERAA 319 GLG A NRL+++A Sbjct: 317 AETGLGTAYMNRLKKSA 333 >gi|307270731|ref|ZP_07552022.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX4248] gi|306513041|gb|EFM81682.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX4248] Length = 340 Score = 327 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 107/317 (33%), Positives = 176/317 (55%), Gaps = 23/317 (7%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLS 80 G +A PTETVYGL D+ N A++++Y++K RP+ NPLI HV+++ MVKK+ A++ ++ Sbjct: 21 GELVAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLSEVA 80 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPLAIPS 139 L FWPGPLTL+ + + + T L+T FR+P LIE PL PS Sbjct: 81 TKLVSAFWPGPLTLIFN-VPSDTFSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPS 139 Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC-EKKVRILRPGGLE 198 AN SG+ S T+ +H+ + +I I+D G ++IG+EST++++ + ILRPG + Sbjct: 140 ANTSGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAIT 198 Query: 199 IETLKRAIS-VELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVP 256 E L+ I V+++ + + ET+ P++PGM HY+P ++V + + +A I+ Sbjct: 199 KEQLESIIPQVKIDTHLISETAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQAKEQ 258 Query: 257 IKNI--------------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302 + I ENA + ++T ++ A LF ++ D+ GA++I Sbjct: 259 QEKIGLFLSDEQAAQLDTENAFVYSYGAET--VENATKELFAGLRALDEQGATTIFAQGF 316 Query: 303 PNHGLGIAINNRLERAA 319 GLG A NRL+++A Sbjct: 317 AETGLGTAYMNRLKKSA 333 >gi|256616931|ref|ZP_05473777.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis ATCC 4200] gi|307276804|ref|ZP_07557915.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX2134] gi|256596458|gb|EEU15634.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis ATCC 4200] gi|306506441|gb|EFM75600.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX2134] Length = 340 Score = 327 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 104/315 (33%), Positives = 174/315 (55%), Gaps = 19/315 (6%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLS 80 G +A PTETVYGL D+ N A++++Y++K RP+ NPLI HV+++ MVKK+ A++ ++ Sbjct: 21 GELVAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVA 80 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPLAIPS 139 L FWPGPLTL+ + + + T L+T FR+P LIE PL PS Sbjct: 81 TKLVSAFWPGPLTLIFN-VPSDTFSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPS 139 Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC-EKKVRILRPGGLE 198 AN SG+ S T+ +H+ + +I I+D G ++IG+EST++++ + ILRPG + Sbjct: 140 ANTSGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAIT 198 Query: 199 IETLKRAIS-VELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVP 256 E L+ I V+++ + + E + P++PGM HY+P ++V + + +A I+ Sbjct: 199 KEQLESIIPQVKIDTHLISENAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQATEQ 258 Query: 257 IKNI-----ENAIISLN-----LSKTG--KLKEAAFNLFNYMKIADDSGASSIAFSSIPN 304 + I ++ L+ + G ++ A LF ++ D+ GA++I Sbjct: 259 QEKIGLFLSDDQAAQLDTENAFVYSYGAETVENATKELFAGLRALDEQGATTIFAQGFAE 318 Query: 305 HGLGIAINNRLERAA 319 GLG A NRL+++A Sbjct: 319 TGLGTAYMNRLKKSA 333 >gi|295687746|ref|YP_003591439.1| Sua5/YciO/YrdC/YwlC family protein [Caulobacter segnis ATCC 21756] gi|295429649|gb|ADG08821.1| Sua5/YciO/YrdC/YwlC family protein [Caulobacter segnis ATCC 21756] Length = 325 Score = 327 bits (839), Expect = 1e-87, Method: Composition-based stats. Identities = 120/313 (38%), Positives = 172/313 (54%), Gaps = 11/313 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + A L AG + +PTETVYGL D+ NPTA+ ++E K RP NPLI HV+D+ Sbjct: 20 QAEIEAAASALRAGGLVILPTETVYGLGADAANPTAVAAIFEAKGRPRFNPLIAHVADLE 79 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKL 127 ++ A D + LA+ FWPGPLT+V + + + L+ A L T RVP + + Sbjct: 80 TAERIADFDHRARDLAREFWPGPLTIVAPIKDASVVCDLARAGLDTVAIRVPGHPVSRAV 139 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + +G + PSANRSG+ S T ++ + + +DGG +GLEST+V+V + Sbjct: 140 LAAFGGAVVAPSANRSGRPSPTTYADAMAET-GDKAAAALDGGPCAVGLESTVVSVL-DG 197 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 + R+LRPG + L++ + + +SPG L HYAP + VR+ A P E Sbjct: 198 QARLLRPGAVTRVQLQQIVG---PLAEADDDAKRSPGRLALHYAPDAPVRINAKAPKPGE 254 Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307 A + FG + NLS TG L EAA NLF+Y++ AD + S+IA + IP GL Sbjct: 255 AFLAFG-----GGASGEGVFNLSPTGDLAEAASNLFSYLRAADRTHPSAIAVAPIPEEGL 309 Query: 308 GIAINNRLERAAA 320 G AIN+RL RAA Sbjct: 310 GEAINDRLRRAAG 322 >gi|227892678|ref|ZP_04010483.1| Sua5 family translation factor [Lactobacillus ultunensis DSM 16047] gi|227865549|gb|EEJ72970.1| Sua5 family translation factor [Lactobacillus ultunensis DSM 16047] Length = 339 Score = 327 bits (839), Expect = 1e-87, Method: Composition-based stats. Identities = 107/334 (32%), Positives = 161/334 (48%), Gaps = 19/334 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ I + L +A + L G +A PTETVYGL + N +++ +Y K RP+ NPL Sbjct: 7 MET-KIFKKDQLDEAVKLLAKGELVAFPTETVYGLGAIATNEKSVKGVYAAKGRPSDNPL 65 Query: 61 ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I VS M++++A V + L K FWPGPLTL+L + T + T L T FR Sbjct: 66 IVTVSGEKMMERYAKEVPERAKKLIKHFWPGPLTLLLFVKPGT-LPDAVTGGLDTVAFRC 124 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T LI G+P+ PSAN S + S T +H+ + +I IIDGG +++GLES Sbjct: 125 PDDQLTHDLIAKLGYPIVGPSANTSTKPSPTTAQHVY-HDLKGKIAGIIDGGPTRVGLES 183 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD---ETSTPQSPGMLKSHYAPRSQ 235 TI+++ + + +LRPG + E L + ++ + P++PGM HYAP Sbjct: 184 TIIDLSVKTPI-VLRPGEITPEELSEVLGEKVLINTGKVADKDVPKAPGMKYRHYAPSEP 242 Query: 236 VRLR-------AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKI 288 V + I+ N + + G+V K +L L +A NLF ++ Sbjct: 243 VIVVDDPADFSKINFNEKTGVAALGSVLAKIDLPKENKFDLG--NNLVDADHNLFGGLRY 300 Query: 289 ADDS-GASSIAFSSIPNHGLGIAINNRLERAAAP 321 DD +I +A NRL +AA Sbjct: 301 FDDMDNIETIYVQGFNEGEESLAYMNRLNKAAGG 334 >gi|116513793|ref|YP_812699.1| putative translation factor (SUA5) [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093108|gb|ABJ58261.1| translation factor SUA5 [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|325125451|gb|ADY84781.1| Putative translation factor SUA5 family [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 331 Score = 327 bits (839), Expect = 1e-87, Method: Composition-based stats. Identities = 106/334 (31%), Positives = 160/334 (47%), Gaps = 19/334 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ I L +A L G +A PTETVYGL + +++++Y K RP+ NPL Sbjct: 1 MET-KIFKREQLDEAVSLLREGGLVAFPTETVYGLGALATRDDSVKKVYAAKGRPSDNPL 59 Query: 61 ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I V+D +M++ +A V + L K FWPGPLT++L L + T L T FR Sbjct: 60 IVTVADEAMMRPYAKEVPERAEKLIKHFWPGPLTILL-LAKEGALPESVTGGLPTVAFRC 118 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T LI G+P+ PSAN S + S T +H+ + +I I+DGG +++GLES Sbjct: 119 PDDQLTHDLIAKLGYPIVGPSANTSTKPSPTTAQHVY-HDLKGKIAGIVDGGETEVGLES 177 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQ 235 TIV++ +LRPG + E + + + E+ V + P++PGM HYAP +Q Sbjct: 178 TIVDLSVN-PAVVLRPGKITPEEISQVLGEEVLINRGQVSDKDVPKAPGMKYRHYAPSAQ 236 Query: 236 VRLR-------AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKI 288 V + + ++ ++ ++ NL K L EA NLF ++ Sbjct: 237 VYVVDQAETFAKLDLDASCGVMATSDLLENLPVPEENKFNLGK--NLTEADHNLFAGLRY 294 Query: 289 ADDS-GASSIAFSSIPNHGLGIAINNRLERAAAP 321 DD SI +A NRL +AA Sbjct: 295 FDDRPEIKSIYVEGFDQGEESLAYMNRLNKAAGG 328 >gi|257090698|ref|ZP_05585059.1| translation factor SUA5 [Enterococcus faecalis CH188] gi|312905239|ref|ZP_07764359.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0635] gi|256999510|gb|EEU86030.1| translation factor SUA5 [Enterococcus faecalis CH188] gi|310631476|gb|EFQ14759.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0635] gi|315579266|gb|EFU91457.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0630] Length = 340 Score = 327 bits (839), Expect = 1e-87, Method: Composition-based stats. Identities = 105/315 (33%), Positives = 174/315 (55%), Gaps = 19/315 (6%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLS 80 G +A PTETVYGL D+ N A++++Y++K RP+ NPLI HV+++ MVKK+ A++ ++ Sbjct: 21 GELVAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVA 80 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPLAIPS 139 L FWPGPLTL+ + + + T L+T FR+P LIE PL PS Sbjct: 81 TKLVSAFWPGPLTLIFN-VPSDTFSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPS 139 Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC-EKKVRILRPGGLE 198 AN SG+ S T+ +H+ + +I I+D G ++IG+EST++++ + ILRPG + Sbjct: 140 ANTSGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAIT 198 Query: 199 IETLKRAIS-VELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVP 256 E L+ I V+++ + + ET+ P++PGM HY+P ++V + + +A I+ Sbjct: 199 KEQLESIIPQVKIDTHLISETAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQATEQ 258 Query: 257 IKNI-----ENAIISLNL-----SKTG--KLKEAAFNLFNYMKIADDSGASSIAFSSIPN 304 + I + L++ G ++ A LF ++ D+ GA++I Sbjct: 259 QEKIGLFLSDKQAAQLDIENVFVYSYGAETVENATKELFAGLRALDEQGATTIFAQGFAE 318 Query: 305 HGLGIAINNRLERAA 319 GLG A NRL+++A Sbjct: 319 TGLGTAYMNRLKKSA 333 >gi|15921819|ref|NP_377488.1| hypothetical protein ST1526 [Sulfolobus tokodaii str. 7] gi|328877147|pdb|3AJE|A Chain A, Crystal Structure Of S. Tokodaii Sua5 Complexed With L-Threonine And Amppnp gi|15622606|dbj|BAB66597.1| 352aa long conserved hypothetical protein [Sulfolobus tokodaii str. 7] Length = 352 Score = 327 bits (839), Expect = 1e-87, Method: Composition-based stats. Identities = 101/338 (29%), Positives = 158/338 (46%), Gaps = 23/338 (6%) Query: 2 QIMSIT----DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 QI+ I + + ++ A + + G +A PTETVYGL ++ + A ++++ K RP Sbjct: 3 QIIKIDPLNPEIDKIKIAADVIRNGGTVAFPTETVYGLGANAFDGNACLKIFQAKNRPVD 62 Query: 58 NPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 NPLI H++D + + + A + L +A++ WPGPLT VL T + TA L T Sbjct: 63 NPLIVHIADFNQLFEVAKDIPDKVLEIAQIVWPGPLTFVL--KKTERVPKEVTAGLDTVA 120 Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R+P +LI G P+A PSAN + + S T + ++ + + +IIDGG + G Sbjct: 121 VRMPAHPIALQLIRESGVPIAAPSANLATRPSPTKAEDVIVD-LNGRVDVIIDGGHTFFG 179 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAIS----VELEYCVDETSTPQSPGMLKSHYA 231 +ESTI+NV E V +LRPG IE LK+ E E +PGM HYA Sbjct: 180 VESTIINVTVEPPV-LLRPGPFTIEELKKLFGEIVIPEFAQGKKEAEIALAPGMKYKHYA 238 Query: 232 PRSQVRLRAIH---------VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNL 282 P +++ L ++ + + + + + L L E A NL Sbjct: 239 PNTRLLLVENRNIFKDVVSLLSKKYKVALLIPKELSKEFEGLQQIILGSDENLYEVARNL 298 Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 F+ + D P G+G AI NR +A+ Sbjct: 299 FDSFRELDKLNVDLGIMIGFPERGIGFAIMNRARKASG 336 >gi|312899931|ref|ZP_07759249.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0470] gi|311292927|gb|EFQ71483.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0470] Length = 340 Score = 327 bits (839), Expect = 1e-87, Method: Composition-based stats. Identities = 107/317 (33%), Positives = 175/317 (55%), Gaps = 23/317 (7%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLS 80 G +A PTETVYGL D+ N A++++Y++K RP+ NPLI HV+++ MVKK+ A++ ++ Sbjct: 21 GELVAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVA 80 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPLAIPS 139 L FWPGPLTL+ + + + T L+T FR+P LIE PL PS Sbjct: 81 TKLVSAFWPGPLTLIFN-VPSDTFSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPS 139 Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC-EKKVRILRPGGLE 198 AN SG+ S T+ KH+ + +I I+D G ++IG+EST++++ + ILRPG + Sbjct: 140 ANTSGKPSPTSAKHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAIT 198 Query: 199 IETLKRAIS-VELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVP 256 E L+ I V+++ + + E + P++PGM HY+P ++V + + +A I+ Sbjct: 199 KEQLESIIPQVKIDTHLISENAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQAKEQ 258 Query: 257 IKNI--------------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302 + I ENA + ++T ++ A LF ++ D+ GA++I Sbjct: 259 QEKIGLFLSDEQAAQLDTENAFVYSYGAET--VENATKELFAGLRALDEQGATTIFAQGF 316 Query: 303 PNHGLGIAINNRLERAA 319 GLG A NRL+++A Sbjct: 317 AETGLGTAYMNRLKKSA 333 >gi|238651093|ref|YP_002916951.1| hypothetical protein RPR_07435 [Rickettsia peacockii str. Rustic] gi|238625191|gb|ACR47897.1| hypothetical protein RPR_07435 [Rickettsia peacockii str. Rustic] Length = 312 Score = 327 bits (839), Expect = 2e-87, Method: Composition-based stats. Identities = 124/315 (39%), Positives = 174/315 (55%), Gaps = 13/315 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + KA +F+ +G + PTETVYG+ D+ N A ++++ K+RPA+NPLI HVS I K Sbjct: 2 INKAVQFIKSGKVVVFPTETVYGIGADATNNEACLKIFQFKERPAINPLIVHVSSIEQAK 61 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIET 130 + D L+ +A+ FW GPL++V+ L +I P TA L T R+P +LI Sbjct: 62 EIGEFDDLATKIAEKFWSGPLSIVVPLKENANIAPSVTAGLNTIALRIPSYPVALELIRQ 121 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI--SKIGLESTIVNVQCEKK 188 G P+A PSAN S IS TN +H+ + I+ I SK GLESTI++ Sbjct: 122 SGIPIAAPSANPSNYISPTNAEHVTKHFKDNQEIFILAPEIYQSKYGLESTIID-TTTVT 180 Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248 ILR G + E L + +E+ ETST ++ GML HY+P+ VRL AI++ +E Sbjct: 181 PTILREGFITAEILGEILGIEV-LKASETSTIKASGMLAKHYSPKVPVRLNAINLEDKEI 239 Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD----SGASSIAFSSIPN 304 + F N + +SLNLS G EAA NL+ Y++I DD IA S IP Sbjct: 240 GLNFSNSNL----TGRVSLNLSVKGDFIEAAANLYAYLRILDDYAASHDVRGIAVSPIPQ 295 Query: 305 HGLGIAINNRLERAA 319 +G AIN+RL+RAA Sbjct: 296 VNIGAAINDRLKRAA 310 >gi|225570088|ref|ZP_03779113.1| hypothetical protein CLOHYLEM_06184 [Clostridium hylemonae DSM 15053] gi|225161558|gb|EEG74177.1| hypothetical protein CLOHYLEM_06184 [Clostridium hylemonae DSM 15053] Length = 350 Score = 327 bits (839), Expect = 2e-87, Method: Composition-based stats. Identities = 98/331 (29%), Positives = 162/331 (48%), Gaps = 25/331 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A + L G +A PTETVYGL D+ + A ++Y K RP+ NPLI H++++ ++ Sbjct: 18 IQEAGDILKRGGLVAFPTETVYGLGADALSEEAAAKIYAAKGRPSDNPLIVHITNMGDLE 77 Query: 72 KHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 K A + ++ +A +WPGPLT++ + +T L T R+P +++I+ Sbjct: 78 KVAEKIPAEAVKVAGKYWPGPLTMIF--HKKDIVPYGTTGGLDTVAVRMPSHEIAREVID 135 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G +A PSAN SG+ S T +H+ + I +I+DGG +IG+ESTI+++ + Sbjct: 136 AGGGFIAAPSANTSGRPSPTTAQHV-KEDMDGRIEMIVDGGPVEIGVESTILDMTVTPPM 194 Query: 190 RILRPGGLEIETLKRAIS-VELEYCV---DETSTPQSPGMLKSHYAPRSQV--------- 236 ILRPG + E L I V +++ + D T P++PGM HYAP +++ Sbjct: 195 -ILRPGAVTEEMLTELIGAVAVDHTLITADSTEAPKAPGMKYRHYAPNAELVIIEGPASK 253 Query: 237 ------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD 290 RL + G + + ++ A L+ ++ D Sbjct: 254 VTEEINRLARARQKEGYKVGIIGTEETVSGYTSGDVKSIGTREDESTIAGRLYAVLREFD 313 Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 D G + I S G+G AI NRL +AA Sbjct: 314 DDGVNYIYSESFATGGIGSAIMNRLLKAAGH 344 >gi|257416746|ref|ZP_05593740.1| Sua5/YciO/YrdC/YwlC [Enterococcus faecalis AR01/DG] gi|257158574|gb|EEU88534.1| Sua5/YciO/YrdC/YwlC [Enterococcus faecalis ARO1/DG] Length = 340 Score = 327 bits (839), Expect = 2e-87, Method: Composition-based stats. Identities = 107/317 (33%), Positives = 175/317 (55%), Gaps = 23/317 (7%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLS 80 G +A PTETVYGL D+ N TA++++Y++K RP+ NPLI HV+++ MVKK+ A++ ++ Sbjct: 21 GELVAFPTETVYGLGADALNETAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVA 80 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPLAIPS 139 L FWPGPLTL+ + + + T L+T FR+P LIE PL PS Sbjct: 81 TKLVSAFWPGPLTLIFN-VPSDTFSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPS 139 Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC-EKKVRILRPGGLE 198 AN SG+ S T+ +H+ + EI I+D G ++IG+EST++++ + ILRPG + Sbjct: 140 ANTSGKPSPTSAEHVY-HDLQGEIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAIT 198 Query: 199 IETLKRAIS-VELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFG--- 253 E L+ I V+++ + + E + P++PGM HY+P ++V + + +A I+ Sbjct: 199 KEQLESIIPQVKIDTHLISENAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQATEQ 258 Query: 254 -----------NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302 + ENA + ++T ++ A LF ++ D+ GA++I Sbjct: 259 QEKIGLFLSDEQAAQLDTENAFVYSYGAET--VENATKELFAGLRALDEQGATTIFAQGF 316 Query: 303 PNHGLGIAINNRLERAA 319 GLG A NRL+++A Sbjct: 317 AETGLGTAYMNRLKKSA 333 >gi|312877224|ref|ZP_07737193.1| Sua5/YciO/YrdC/YwlC family protein [Caldicellulosiruptor lactoaceticus 6A] gi|311796033|gb|EFR12393.1| Sua5/YciO/YrdC/YwlC family protein [Caldicellulosiruptor lactoaceticus 6A] Length = 348 Score = 327 bits (839), Expect = 2e-87, Method: Composition-based stats. Identities = 112/337 (33%), Positives = 158/337 (46%), Gaps = 27/337 (8%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 D L KA L G +A PTETVYGL ++ A+ +++ K RP NPLI HVS Sbjct: 11 IDYKKLEKAALILREGGLVAFPTETVYGLGANALLKDAVDKIFWAKGRPQDNPLIIHVSS 70 Query: 67 ISMVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 M++ A + D L + FWPGPLT+VL I TA L T R+P Sbjct: 71 KDMLEMCAEITDERVYMLIERFWPGPLTIVLP--KKDVIPENVTAGLSTVGVRMPANKIA 128 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 +LI G P+A PSAN SG+ S T KH++ + ++ +IIDGG GLEST+V++ Sbjct: 129 LELIRLSGIPVAAPSANVSGKPSPTEAKHVI-EDLMGKVDVIIDGGKCSFGLESTVVDLS 187 Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVD-----ETSTPQSPGMLKSHYAPRSQVRLR 239 EK V ILRPG + LK + ++EY + P+SPGM HYAP +++ + Sbjct: 188 GEKAV-ILRPGAISYFALKEVLG-DIEYSKSVVEGLTGTVPRSPGMKYKHYAPDAKLIIV 245 Query: 240 AIHVNPREALI--RFGNVPIKNIENAIISLN-------------LSKTGKLKEAAFNLFN 284 ++ R I + K I+ L KE NLF+ Sbjct: 246 KGRIDKRIDKINEMKKKLEFKGYNVGILCFYETAHNFDSQYKLILGSMFDAKECGRNLFS 305 Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 ++ + G I +A+ NRL +AAA Sbjct: 306 ILRKFNQLGVDYILCEWGEFDLEFLALENRLYKAAAN 342 >gi|227873768|ref|ZP_03991997.1| Sua5/YciO/YrdC/YwlC family protein [Oribacterium sinus F0268] gi|227840384|gb|EEJ50785.1| Sua5/YciO/YrdC/YwlC family protein [Oribacterium sinus F0268] Length = 367 Score = 327 bits (839), Expect = 2e-87, Method: Composition-based stats. Identities = 107/368 (29%), Positives = 159/368 (43%), Gaps = 51/368 (13%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ I + +A E L G +A PTETVYGL + + A +++Y K RP+ NPL Sbjct: 1 MKT-KIFGKEGISEAAEILKGGGLVAFPTETVYGLGGNGLDKEAAKKIYAAKGRPSDNPL 59 Query: 61 ICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I HVS I V P + L + FWPGPLTLVL + + ST L+T R Sbjct: 60 ILHVSSIEEVYPLVKALPEKAKKLMEAFWPGPLTLVLP--KSDLVPKESTGGLETVALRS 117 Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T LI G P+A PSAN SG+ S T H+ + I I++ G IG+ES Sbjct: 118 PENALTLSLIRACGFPIAGPSANLSGRPSPTEASHVF-EDLGGRIEGILEDGAVGIGVES 176 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELE-------YCVDETSTPQSPGMLKSHYA 231 TIV++ E +LRPG + IE L+ + ++ + E P++PGM HYA Sbjct: 177 TIVDL-SENCPTLLRPGAITIEDLEEVLGEKVAIDPTLLGKSMAEGFIPKAPGMKYRHYA 235 Query: 232 PRSQVRLRAIHV-------------------------------------NPREALIRFGN 254 P++++ L ++ L Sbjct: 236 PKAEMILFKKNLLSDQSQKVNEIPYGEEKKLIAKSILSYGAKELSDCPERKIWILCGEDT 295 Query: 255 VPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNR 314 + ++ L + + NLF ++ AD+ G I G+G A+ NR Sbjct: 296 ASLYEGDSRFTVKILGRREEPLSMTHNLFRLLRQADEEGVELILGECYSEEGVGFALMNR 355 Query: 315 LERAAAPR 322 +++AA R Sbjct: 356 MKKAAGQR 363 >gi|257087539|ref|ZP_05581900.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis D6] gi|256995569|gb|EEU82871.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis D6] gi|315025304|gb|EFT37236.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX2137] Length = 340 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 106/317 (33%), Positives = 175/317 (55%), Gaps = 23/317 (7%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLS 80 G +A PTETVYGL D+ N A++++Y++K RP+ NPLI HV+++ MVKK+ A++ ++ Sbjct: 21 GELVAFPTETVYGLGADALNKAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVA 80 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPLAIPS 139 L FWPGPLTL+ + + + T L+T FR+P LIE PL PS Sbjct: 81 TKLVSAFWPGPLTLIFN-VPSDTFSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPS 139 Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC-EKKVRILRPGGLE 198 AN SG+ S T+ +H+ + +I I+D G ++IG+EST++++ + ILRPG + Sbjct: 140 ANTSGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAIT 198 Query: 199 IETLKRAIS-VELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVP 256 E L+ I V+++ + + E + P++PGM HY+P ++V + + +A I+ Sbjct: 199 KEQLESIIPQVKIDTHLISENAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQAKEQ 258 Query: 257 IKNI--------------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302 + I ENA + ++T ++ A LF ++ D+ GA++I Sbjct: 259 QEKIGLFLSDEQAAQLDTENAFVYSYGAET--VENATKELFAGLRALDEQGATTIFAQGF 316 Query: 303 PNHGLGIAINNRLERAA 319 GLG A NRL+++A Sbjct: 317 AETGLGTAYMNRLKKSA 333 >gi|312869583|ref|ZP_07729734.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus oris PB013-T2-3] gi|311094869|gb|EFQ53162.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus oris PB013-T2-3] Length = 354 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 101/333 (30%), Positives = 165/333 (49%), Gaps = 19/333 (5%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 I N + +A + G +A PTETVYGL D+ N A++ +Y K RP+ NPLI HV Sbjct: 16 KIYQLNQIDEAAAAIQRGELVAFPTETVYGLGADATNEPAVKNVYLAKGRPSDNPLIVHV 75 Query: 65 SDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 + ++MV+K+A+ P + L FWPG LT++L + + T L T FR P Sbjct: 76 NSVAMVEKYAAEIPANARKLMDAFWPGSLTIILKIKKGA-LSKTVTGGLSTVAFRFPDNQ 134 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 T LI G P+ PSAN SG+ S T +H+ + +I I+D G +++G+EST+++ Sbjct: 135 PTLDLIGKAGVPIVGPSANTSGKPSPTTAQHVY-HDLNGKITGILDDGPTRVGVESTVLD 193 Query: 183 VQCEKKVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 + V ILRPG + + ++ I + V + TP++PGM HYAP +QV + Sbjct: 194 MSTATPV-ILRPGAVTKQDIEGVIGSIDLNHHQVGKNETPKAPGMKYKHYAPSAQVYIVN 252 Query: 241 IHVNPREALIRFGNVP-----------IKNIENAIISLNLSKTGKLKEAAFNLFNYMKIA 289 + + P ++ + + ++ S +++A+ LF+ ++ Sbjct: 253 EGTDWAKVAKWVAQQPFDVGVMAEERILQQLTLPMNAVQFSLGTGVEDASARLFDGLRGF 312 Query: 290 DDS-GASSIAFSSIPNHGLGIAINNRLERAAAP 321 DD +I + LG A NRL ++A Sbjct: 313 DDQPNVKAIVTEAFTAKNLGRAYMNRLNKSAGG 345 >gi|15893238|ref|NP_360952.1| hypothetical protein RC1315 [Rickettsia conorii str. Malish 7] gi|15620456|gb|AAL03853.1| unknown [Rickettsia conorii str. Malish 7] Length = 312 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 124/315 (39%), Positives = 173/315 (54%), Gaps = 13/315 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + KA +F+ +G + PTETVYG+ D+ N A ++++ K+RPA+NPLI HVS I K Sbjct: 2 INKAVQFIKSGKVVVFPTETVYGIGADATNNEACLKIFQFKERPAINPLIVHVSSIEQAK 61 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIET 130 + D L+ +A+ FW GPL++V+ L +I P TA L T R+P +LI Sbjct: 62 EIGEFDDLATKIAEKFWSGPLSIVVPLKENANIAPSVTAGLNTIALRIPSYPVALELIRQ 121 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI--SKIGLESTIVNVQCEKK 188 G P+A PSAN S IS TN +H+ + I+ I SK GLESTI++ Sbjct: 122 SGIPIAAPSANPSNYISPTNAEHVTKHFKDNQEIFILAPEIYQSKYGLESTIID-TTTVT 180 Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248 ILR G + E L + +E+ ETST ++ GML HY+P+ VRL AI++ +E Sbjct: 181 PTILREGFITAEILGEILGIEV-LKASETSTIKASGMLAKHYSPKVPVRLNAINLEDKEI 239 Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD----SGASSIAFSSIPN 304 + F N + SLNLS G EAA NL+ Y++I DD IA S IP Sbjct: 240 GLNFSNSNL----TGRFSLNLSVKGDFIEAAANLYAYLRILDDYAASHDVRGIAVSPIPQ 295 Query: 305 HGLGIAINNRLERAA 319 +G AIN+RL+RAA Sbjct: 296 VNIGAAINDRLKRAA 310 >gi|34581094|ref|ZP_00142574.1| hypothetical protein [Rickettsia sibirica 246] gi|229587215|ref|YP_002845716.1| Sua5/YciO/YrdC/YwlC family putative translation factor protein [Rickettsia africae ESF-5] gi|28262479|gb|EAA25983.1| unknown [Rickettsia sibirica 246] gi|228022265|gb|ACP53973.1| Sua5/YciO/YrdC/YwlC family putative translation factor protein [Rickettsia africae ESF-5] Length = 312 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 124/315 (39%), Positives = 174/315 (55%), Gaps = 13/315 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + KA +F+ +G + PTETVYG+ D+ N A ++++ K+RPA+NPLI HVS I K Sbjct: 2 INKAVQFIKSGKVVVFPTETVYGIGADATNNEACLKIFQFKERPAINPLIVHVSSIEQAK 61 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIET 130 + D L+ +A+ FW GPL++V+ L +I P TA L T R+P +LI Sbjct: 62 EIGEFDDLATKIAEKFWSGPLSIVVPLKENANIAPSVTAGLNTIALRIPSYPVALELIRQ 121 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI--SKIGLESTIVNVQCEKK 188 G P+A PSAN S IS TN +H+ + I+ I SK GLESTI++ Sbjct: 122 SGIPIAAPSANPSNYISPTNAEHVTKHFKDNQEIFILAPEIYQSKYGLESTIID-TTTVT 180 Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248 ILR G + E L + +E+ ETST ++ GML HY+P+ VRL AI++ +E Sbjct: 181 PTILREGFITAEILGEILGIEV-LKASETSTIKASGMLAKHYSPKVPVRLNAINLEDKEI 239 Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD----SGASSIAFSSIPN 304 + F N + SLNLS G EAA NL+ Y++I DD IA S IP Sbjct: 240 GLNFSNSNL----TGRFSLNLSVKGDFIEAAANLYAYLRILDDYAASHDVRGIAVSPIPQ 295 Query: 305 HGLGIAINNRLERAA 319 +G+AIN+RL+RAA Sbjct: 296 VNIGVAINDRLKRAA 310 >gi|154249397|ref|YP_001410222.1| Sua5/YciO/YrdC/YwlC family protein [Fervidobacterium nodosum Rt17-B1] gi|154153333|gb|ABS60565.1| Sua5/YciO/YrdC/YwlC family protein [Fervidobacterium nodosum Rt17-B1] Length = 331 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 98/328 (29%), Positives = 160/328 (48%), Gaps = 11/328 (3%) Query: 2 QIMSITD--SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 +I+ + D + + ACE L +G +A PTETVYGL + NP A+++++++K RPA NP Sbjct: 8 KIIKVDDLYNPDISYACEVLKSGGLVAFPTETVYGLGATATNPEAVKKIFQVKGRPADNP 67 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 LI HVS + ++ A + + + K PGP+T VL +I TA L+T R+ Sbjct: 68 LIVHVSSVDEIENIAYLSEKYIDIIKKVTPGPITFVL--KKKENIPSEVTAGLETVGVRI 125 Query: 120 PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 P + + P+A PSANRSG+ S T+ ++ + + IID G G+EST Sbjct: 126 PAHPVAQKLINCSGPIAAPSANRSGKPSPTDANAVI-EDLNGLVECIIDAGECAFGIEST 184 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 IV++ + V +LRPG + +E L + V Y + E P +PGM HYAP + L Sbjct: 185 IVDLTKDFPV-VLRPGPITLEELTQLFGVVEFYQLKEGEKPLAPGMKYRHYAPEKHLELV 243 Query: 240 AIHVNPREALIRFGNVPIKNIENAII-----SLNLSKTGKLKEAAFNLFNYMKIADDSGA 294 + K + +I + + K A NL+ + D + Sbjct: 244 DQSALLEYQNTDVLILCTKETKERLIPNAKNVYIIGELSKPYTIAQNLYRSFRDIDKTNY 303 Query: 295 SSIAFSSIPNHGLGIAINNRLERAAAPR 322 +P +G+ +I NR+++A + + Sbjct: 304 KYAVIEKLPEYGIFFSIMNRIKKAVSKK 331 >gi|167747415|ref|ZP_02419542.1| hypothetical protein ANACAC_02135 [Anaerostipes caccae DSM 14662] gi|167652777|gb|EDR96906.1| hypothetical protein ANACAC_02135 [Anaerostipes caccae DSM 14662] Length = 351 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 102/335 (30%), Positives = 163/335 (48%), Gaps = 25/335 (7%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 + A+R+A L G +A PTETVYGL A R+YE K RP+ NPLI H+ + Sbjct: 16 NKEAIREAAGLLREGKLVAFPTETVYGLGGSGWMEEAASRIYEAKGRPSDNPLILHIGSM 75 Query: 68 SMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK- 125 M+ + AS P + FWPGPLT++L + + T L + R+P Sbjct: 76 EMIDEIASCVPGPAKKAMDAFWPGPLTVILP--KSDKVPYRVTGGLDSVAVRMPSHPAAL 133 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 L+ G P+A PSAN SG+ S T +H++ + +IP+++DGG ++G+ESTIV+ Sbjct: 134 ALLREAGVPVAAPSANTSGRPSPTKAEHVV-EDLDGKIPMVLDGGKVEVGVESTIVDFTG 192 Query: 186 EKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242 E V ILRPG + + L++A+S E+ V E + P++PGM HYAP++Q+ L Sbjct: 193 EVPV-ILRPGKITKDELEKALSTEVLMSTLSVKEDTVPRAPGMKYKHYAPKAQLVLILGE 251 Query: 243 VNPREA-------------LIRFGNVPIKNI---ENAIISLNLSKTGKLKEAAFNLFNYM 286 + A ++ G + + +A +++ ++ NL++ + Sbjct: 252 DREKVAEEITKRVRDCREQGMKTGVIATEETMGGYDADEVISVGSRSHMETVTANLYDVL 311 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 + D I A+ NRL +AA Sbjct: 312 REFDHRDVDVIFSEGFEGEEYEEAVMNRLVKAAGH 346 >gi|161507268|ref|YP_001577222.1| Sua5 family translation factor [Lactobacillus helveticus DPC 4571] gi|160348257|gb|ABX26931.1| putative translation factor, SUA5 family [Lactobacillus helveticus DPC 4571] Length = 333 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 106/334 (31%), Positives = 162/334 (48%), Gaps = 19/334 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ I + + +A + L G +A PTETVYGL + +++ +Y K RP+ NPL Sbjct: 1 MET-KIFKKDQIDEAVKLLAEGELVAFPTETVYGLGAIATKEKSVKGVYAAKGRPSDNPL 59 Query: 61 ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I VSD M++++A V + L K FWPGPLTL+L + T + T L T FR Sbjct: 60 IVTVSDEKMMERYAKEVPERAKKLIKHFWPGPLTLLLFVKPGT-LPDAVTGGLDTVAFRC 118 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T LI G+P+ PSAN S + S T +H+ + +I IIDGG +++GLES Sbjct: 119 PDDQLTHDLIAKLGYPIVGPSANTSTKPSPTTAEHVY-HDLKDKIAGIIDGGPTRVGLES 177 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD---ETSTPQSPGMLKSHYAPRSQ 235 TI+++ + + +LRPG + E L + ++ + P++PGM HYAP Sbjct: 178 TIIDLSVKTPI-VLRPGEITPEELSEVLGEKVLINTGKVADKDVPKAPGMKYRHYAPSEP 236 Query: 236 VRLR-------AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKI 288 V + I N + ++ G+V + +L K L +A NLF ++ Sbjct: 237 VVVVDDPADFGKIDFNDKTGVVALGSVLDQINLPEENKFDLGK--NLIDADHNLFGALRY 294 Query: 289 ADDS-GASSIAFSSIPNHGLGIAINNRLERAAAP 321 DD +I +A NRL +AA Sbjct: 295 FDDKDDIETIYVQGFDEGEESLAYMNRLNKAAGG 328 >gi|84500239|ref|ZP_00998505.1| Putative translation factor [Oceanicola batsensis HTCC2597] gi|84392173|gb|EAQ04441.1| Putative translation factor [Oceanicola batsensis HTCC2597] Length = 314 Score = 326 bits (837), Expect = 2e-87, Method: Composition-based stats. Identities = 133/324 (41%), Positives = 178/324 (54%), Gaps = 13/324 (4%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +++ TD + L +A L +G +A+PTETVYGLA D+ + A+ +Y K RP+ NPLI Sbjct: 3 ELLKPTD-DGLDRAAALLRSGGLVAMPTETVYGLAGDAADDRAVAAIYAAKGRPSFNPLI 61 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 HV+D +V + V + L + FWPGPLTLVL L + PL TA L T R+P Sbjct: 62 VHVADPDLVGRLVRVSAEAAALIEAFWPGPLTLVLPLREAAPVSPLVTAGLPTLAVRMPA 121 Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 + L+ +G LA PSAN SG++S H++ + + I ++DGG +GLESTI Sbjct: 122 HPVARSLLTAFGGGLAAPSANPSGRVSPVTAAHVM-AGLAGRIDAVLDGGECGVGLESTI 180 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 V + V ILR GG+ E L + E T +PG L SHYAP QVR+ Sbjct: 181 VGFDGDAPV-ILRDGGVTAEDLASVMG-ETPRRRGATGRIDAPGQLASHYAPSGQVRIGV 238 Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300 P E + FG V LNLS+TG L EAA NLF + D G+ IA + Sbjct: 239 TAPEPGETYLGFGPVTCD--------LNLSETGDLAEAAANLFRHFHTLDAQGSERIAVA 290 Query: 301 SIPNHGLGIAINNRLERAAAPRNQ 324 +P+HGLG AIN+RL RAAAPR Sbjct: 291 PVPDHGLGRAINDRLRRAAAPRQA 314 >gi|51474016|ref|YP_067773.1| hypothetical protein RT0837 [Rickettsia typhi str. Wilmington] gi|51460328|gb|AAU04291.1| conserved hypothetical protein [Rickettsia typhi str. Wilmington] Length = 313 Score = 326 bits (837), Expect = 2e-87, Method: Composition-based stats. Identities = 116/315 (36%), Positives = 172/315 (54%), Gaps = 12/315 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L KA +F+ +G + PTETVYG+ D+ N A ++++ K RP +NPLI HV+ I K Sbjct: 2 LNKAVQFIKSGKVVVFPTETVYGIGADATNNEACLKIFQFKNRPVINPLIVHVASIVQAK 61 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIET 130 + L+ +A+ FWPGPL++V+ L +I P TA L T R+P LI Sbjct: 62 AIGEFNKLAEKIARKFWPGPLSIVVPLKDNVNIAPSVTAGLNTIALRIPSYSIALALIRQ 121 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI--SKIGLESTIVNVQCEKK 188 P+A PSAN S IS TN +H+ I+ I + GLESTI++ Sbjct: 122 SVVPIAAPSANPSNYISPTNAEHVTKHFKDNREIFILSPEIYQCEYGLESTIID-TTTVI 180 Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248 ILR G + E L+ + V++ + S ++PGML+ HY+P +RL AI++N +E Sbjct: 181 PTILREGFITSEILEELLGVKILKASEINSIVKAPGMLQKHYSPNVHIRLNAINLNDKEI 240 Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD----SGASSIAFSSIPN 304 + FGN + +LNLS G EAA NL++Y++I DD + + IA + +P Sbjct: 241 GLNFGNSNL----TGKFALNLSTEGNFIEAAANLYSYLRILDDYAALNDINCIAVAPVPL 296 Query: 305 HGLGIAINNRLERAA 319 +G AIN+RL+RAA Sbjct: 297 TNIGAAINDRLKRAA 311 >gi|295109526|emb|CBL23479.1| Sua5/YciO/YrdC/YwlC family protein [Ruminococcus obeum A2-162] Length = 354 Score = 326 bits (837), Expect = 2e-87, Method: Composition-based stats. Identities = 101/346 (29%), Positives = 173/346 (50%), Gaps = 29/346 (8%) Query: 2 QIMSIT----DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 QI+++T D +A+++A + L AG +A PTETVYGL ++ +P A ++Y K RP+ Sbjct: 4 QIVAMTSENLDMDAIKRAGDILKAGGLVAFPTETVYGLGGNALDPQASMKIYAAKGRPSD 63 Query: 58 NPLICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 NPLI H+++ + + + P LA+ +WPGPLT++L + +T L + Sbjct: 64 NPLIVHIAEADQLAEITTEIPQGAKILAEKYWPGPLTMILPKADI--VPKETTGGLDSVA 121 Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R P ++LI+ G +A PSAN SG+ S T +H+ + I +IIDGG IG Sbjct: 122 VRFPSDRIAQELIKAAGGFVAAPSANTSGRPSPTMAEHV-EEDLGDAIDMIIDGGQVGIG 180 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYC---VDETSTPQSPGMLKSHYA 231 LESTIV+ + V +LRPG + ++ LK + V ++ D + P++PGM HYA Sbjct: 181 LESTIVDFTEDVPV-VLRPGYISLQMLKETLGDVRMDRGLLITDNSVHPKAPGMKYRHYA 239 Query: 232 PRSQV------------RLRAIHVNPREALIRFGNVPIKNIENAII---SLNLSKTGKLK 276 P++ + + + + ++ G + ++ ++ + + Sbjct: 240 PKADLSIVEGTEAQVIDCINRLSAEAEKKGLKVGVIATNETKDRYAHADVFSIGSREEEE 299 Query: 277 EAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 A +L+ ++ DD I + +G AI NRL +AA + Sbjct: 300 TIAHHLYEVLRSFDDDRVDLIYSEAFYTPRMGQAIMNRLLKAAGHK 345 >gi|257421858|ref|ZP_05598848.1| conserved hypothetical protein [Enterococcus faecalis X98] gi|257163682|gb|EEU93642.1| conserved hypothetical protein [Enterococcus faecalis X98] gi|315155437|gb|EFT99453.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0043] Length = 340 Score = 326 bits (837), Expect = 3e-87, Method: Composition-based stats. Identities = 105/315 (33%), Positives = 173/315 (54%), Gaps = 19/315 (6%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLS 80 G +A PTETVYGL D+ N A++++Y++K RP+ NPLI HV+++ MVKK+ A++ ++ Sbjct: 21 GELVAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVA 80 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPLAIPS 139 L FWPGPLTL+ + + T L+T FR+P LIE PL PS Sbjct: 81 TKLVSAFWPGPLTLIFN-VPRDTFSKTVTGGLETVAFRMPDNQATLTLIEQANVPLVGPS 139 Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC-EKKVRILRPGGLE 198 AN SG+ S T+ +H+ + +I I+D G ++IG+EST++++ + ILRPG + Sbjct: 140 ANTSGKPSPTSAEHVY-HDLQGKIAAILDDGSTQIGVESTVLDLTAEDGVPVILRPGAIT 198 Query: 199 IETLKRAIS-VELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVP 256 E L+ I V+++ + + ET+ P++PGM HY+P ++V + + +A I+ Sbjct: 199 KEQLESVIPQVKIDTHLISETAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQAKEQ 258 Query: 257 IKNI-----ENAIISLN-----LSKTG--KLKEAAFNLFNYMKIADDSGASSIAFSSIPN 304 + I + L+ + G ++ A LF ++ D+ GA++I Sbjct: 259 QEKIGLFLSDEQAAQLDTENTFVYSYGAETVENATKELFAGLRALDEQGATTIFAQGFAE 318 Query: 305 HGLGIAINNRLERAA 319 GLG A NRL+++A Sbjct: 319 TGLGTAYMNRLKKSA 333 >gi|126740572|ref|ZP_01756259.1| Sua5/YciO/YrdC family protein [Roseobacter sp. SK209-2-6] gi|126718373|gb|EBA15088.1| Sua5/YciO/YrdC family protein [Roseobacter sp. SK209-2-6] Length = 324 Score = 326 bits (837), Expect = 3e-87, Method: Composition-based stats. Identities = 132/317 (41%), Positives = 176/317 (55%), Gaps = 9/317 (2%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L +A + L AG ++ TETVYGL D+R A+ +Y K RP+ NPLI H + Sbjct: 16 DPAGLTRAAQLLQAGELVSFATETVYGLGADARQGEAVAAIYAAKGRPSFNPLIVHAASA 75 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKK 126 +++ + + LA+ FWPGPLTLVL L I L TA L+T RVP ++ Sbjct: 76 EAAQRYVLWNGWAEVLAQAFWPGPLTLVLPLRPKHGISGLVTAGLETLAVRVPAQPSAQR 135 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L++ + P+A PSAN SG+IS T H+ + + I I+D G +GLESTIV + E Sbjct: 136 LLQIFDGPVAAPSANPSGRISPTLASHVF-AGLNGRIAAIVDDGACGVGLESTIVGLAGE 194 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246 + +LRPGGL E ++ A+ L D +PG L SHYAP QVRL A Sbjct: 195 API-LLRPGGLAAEEIEEALGQPL-RQRDVQDPLTAPGQLLSHYAPNEQVRLNAAAARNG 252 Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306 E + FG E+ LNLS GKL EAA +LF+Y+ D G IA + IP+ G Sbjct: 253 EVFLGFGAHQGSGPED----LNLSPDGKLTEAAAHLFDYLHQLDGLG-RPIAVAPIPDEG 307 Query: 307 LGIAINNRLERAAAPRN 323 LG AIN+RL RAAAPR+ Sbjct: 308 LGAAINDRLARAAAPRD 324 >gi|167760279|ref|ZP_02432406.1| hypothetical protein CLOSCI_02652 [Clostridium scindens ATCC 35704] gi|167662162|gb|EDS06292.1| hypothetical protein CLOSCI_02652 [Clostridium scindens ATCC 35704] Length = 352 Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats. Identities = 104/345 (30%), Positives = 163/345 (47%), Gaps = 30/345 (8%) Query: 3 IMSITDSN-----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 I+ D N +R+A L G +A PTETVYGL D+ N A +++Y K RP+ Sbjct: 7 IIEKIDKNKINTYIIREAGRILREGGLVAFPTETVYGLGADALNEHAAQKIYAAKGRPSD 66 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLA-KLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 NPLI H++++ + K S P + + +WPGPLT++ D + + +T L T Sbjct: 67 NPLIIHITNMDDLAKITSFIPEAAKVIADKYWPGPLTMIFD--KSGIVPYGTTGGLDTVA 124 Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R+P +++I+ G +A PSAN SG+ S T H+ + +I +IIDGG IG Sbjct: 125 VRMPSHEIAREVIDAGGGYIAAPSANTSGRPSPTTALHV-EEDMTGKIDMIIDGGSVDIG 183 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCV---DETSTPQSPGMLKSHYA 231 +ESTI+++ ILRPG + E L I V ++ + D TP++PGM HYA Sbjct: 184 VESTILDMTV-VPPMILRPGAITREMLTELIGEVSVDKTLITPDSKKTPKAPGMKYRHYA 242 Query: 232 PRSQVRLRAIHVNPREALIR---------------FGNVPIKNIENAIISLNLSKTGKLK 276 P++++ + + A I G A ++ Sbjct: 243 PKAELTIVEGEIKEVIAKINSLAAEKLEEGLKVGIIGTEETVGCYPAGDVKSIGTREDEA 302 Query: 277 EAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 A +L+ ++ D+ G I + G+G AI NRL +AA Sbjct: 303 TIAGSLYGILREFDNDGVDYIYSEAFATGGIGSAIMNRLLKAAGH 347 >gi|315148530|gb|EFT92546.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX4244] Length = 340 Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats. Identities = 107/317 (33%), Positives = 175/317 (55%), Gaps = 23/317 (7%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLS 80 G +A PTETVYGL D+ N A++++Y++K RP+ NPLI HV+++ MVKK+ A++ ++ Sbjct: 21 GELVAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVA 80 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPLAIPS 139 L FWPGPLTL+ + + T L+T FR+P LIE PL PS Sbjct: 81 TKLVSAFWPGPLTLIFN-VPRDTFSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPS 139 Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC-EKKVRILRPGGLE 198 AN SG+ S T+ +H+ + +I I+D G ++IG+EST++++ + ILRPG + Sbjct: 140 ANTSGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAIT 198 Query: 199 IETLKRAIS-VELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVP 256 E L+ I V+++ + + ET+ P++PGM HY+P ++V + + +A I+ Sbjct: 199 KEQLESIIPQVKIDTHLISETAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQAKEQ 258 Query: 257 IKNI--------------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302 + I ENA + ++T ++ A LF ++ D+ GA++I Sbjct: 259 QEKIGLFLSDEQAAQLDTENAFVYSYGAET--VENATKELFAGLRALDEQGATTIFAQGF 316 Query: 303 PNHGLGIAINNRLERAA 319 GLG A NRL+++A Sbjct: 317 AETGLGTAYMNRLKKSA 333 >gi|315150061|gb|EFT94077.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0012] Length = 340 Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats. Identities = 106/317 (33%), Positives = 174/317 (54%), Gaps = 23/317 (7%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLS 80 G +A PTETVYGL D+ N A++++Y++K RP+ NPLI HV+++ MVKK+ A++ ++ Sbjct: 21 GELVAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVA 80 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPLAIPS 139 L FWPGPLTL+ + + T L+T FR+P LIE PL PS Sbjct: 81 TKLVSAFWPGPLTLIFN-VPRDTFSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPS 139 Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC-EKKVRILRPGGLE 198 AN SG+ S T+ +H+ + +I I+D G ++IG+EST++++ + ILRPG + Sbjct: 140 ANTSGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAIT 198 Query: 199 IETLKRAIS-VELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVP 256 E L+ I V+++ + + E + P++PGM HY+P ++V + + +A I+ Sbjct: 199 KEQLESIIPQVKIDTHLISENAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQAKEQ 258 Query: 257 IKNI--------------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302 + I ENA + ++T ++ A LF ++ D+ GA++I Sbjct: 259 QEKIGLFLSDEQAAQLDTENAFVYSYGAET--VENATKELFAGLRALDEQGATTIFAQGF 316 Query: 303 PNHGLGIAINNRLERAA 319 GLG A NRL+++A Sbjct: 317 AETGLGTAYMNRLKKSA 333 >gi|295113544|emb|CBL32181.1| translation factor SUA5 [Enterococcus sp. 7L76] Length = 340 Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats. Identities = 106/317 (33%), Positives = 175/317 (55%), Gaps = 23/317 (7%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLS 80 G +A PTETVYGL D+ N A++++Y++K RP+ NPLI HV+++ MVKK+ A++ ++ Sbjct: 21 GELVAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVA 80 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPLAIPS 139 L FWPGPLTL+ + + + T L+T FR+P LIE PL PS Sbjct: 81 TKLVSAFWPGPLTLIFN-VPSDTFSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPS 139 Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC-EKKVRILRPGGLE 198 AN SG+ S T+ +H+ + +I I+D G ++IG+EST++++ + ILRPG + Sbjct: 140 ANTSGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAIT 198 Query: 199 IETLKRAIS-VELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFG--- 253 E L+ IS V+++ + + E + P++PGM HY+P ++V + + +A I+ Sbjct: 199 KEQLESIISQVKIDTHLISENAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQATEQ 258 Query: 254 -----------NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302 + ENA + ++T ++ A LF ++ D+ GA++I Sbjct: 259 QEKIGLFLSDEQAAQLDTENAFVYSYGAET--VENATKELFAGLRALDEQGATTIFAQGF 316 Query: 303 PNHGLGIAINNRLERAA 319 GLG A NRL+++A Sbjct: 317 AEIGLGTAYMNRLKKSA 333 >gi|323466865|gb|ADX70552.1| Sua5 family translation factor [Lactobacillus helveticus H10] Length = 339 Score = 326 bits (836), Expect = 4e-87, Method: Composition-based stats. Identities = 106/334 (31%), Positives = 161/334 (48%), Gaps = 19/334 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ I + + +A + L G +A PTETVYGL + +++ +Y K RP+ NPL Sbjct: 7 MET-KIFKKDQIDEAVKLLAEGELVAFPTETVYGLGAIATKEKSVKGVYAAKGRPSDNPL 65 Query: 61 ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I VSD M++++A V + L K FWPGPLTL+L + T + T L T FR Sbjct: 66 IVTVSDEKMMERYAKEVPERAKKLIKHFWPGPLTLLLFVKPGT-LPDAVTGGLDTVAFRC 124 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T LI G+P+ PSAN S + S T +H+ + +I IIDGG +++GLES Sbjct: 125 PDDQLTHDLIAKLGYPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDGGPTRVGLES 183 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD---ETSTPQSPGMLKSHYAPRSQ 235 TI+++ + + +LRPG + E L + ++ + P++PGM HYAP Sbjct: 184 TIIDLSVKTPI-VLRPGEITPEELSEVLGEKVLINTGKVADKDVPKAPGMKYRHYAPSEP 242 Query: 236 VRLR-------AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKI 288 V + I N + + G+V + +L K L +A NLF ++ Sbjct: 243 VVVVDDPADFGKIDFNDKTGVAALGSVLDQINLPEENKFDLGK--NLIDADHNLFGALRY 300 Query: 289 ADDS-GASSIAFSSIPNHGLGIAINNRLERAAAP 321 DD +I +A NRL +AA Sbjct: 301 FDDKDDIETIYVQGFDEGEESLAYMNRLNKAAGG 334 >gi|328468717|gb|EGF39699.1| Sua5 family translation factor [Lactobacillus helveticus MTCC 5463] Length = 333 Score = 325 bits (835), Expect = 4e-87, Method: Composition-based stats. Identities = 106/334 (31%), Positives = 161/334 (48%), Gaps = 19/334 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ I + + +A + L G +A PTETVYGL + +++ +Y K RP+ NPL Sbjct: 1 MET-KIFKKDQIDEAVKLLAEGELVAFPTETVYGLGAIATKEKSVKGVYAAKGRPSDNPL 59 Query: 61 ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I VSD M++++A V + L K FWPGPLTL+L + T + T L T FR Sbjct: 60 IVTVSDEKMMERYAKEVPERAKKLIKHFWPGPLTLLLFVKPGT-LPDAVTGGLDTVAFRC 118 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T LI G+P+ PSAN S + S T +H+ + +I IIDGG +++GLES Sbjct: 119 PDDQLTHDLIAKLGYPIVGPSANTSTKPSPTTAEHVY-HDLKDKIAGIIDGGPTRVGLES 177 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD---ETSTPQSPGMLKSHYAPRSQ 235 TI+++ + + +LRPG + E L + ++ + P++PGM HYAP Sbjct: 178 TIIDLSVKTPI-VLRPGEITPEELSEVLGEKVLINTGKVADKDVPKAPGMKYRHYAPSEP 236 Query: 236 VRLR-------AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKI 288 V + I N + + G+V + +L K L +A NLF ++ Sbjct: 237 VVVVDDPADFGKIDFNDKTGVAALGSVLDQINLPEENKFDLGK--NLIDADHNLFGALRY 294 Query: 289 ADDS-GASSIAFSSIPNHGLGIAINNRLERAAAP 321 DD +I +A NRL +AA Sbjct: 295 FDDKDDIETIYVQGFDEGEESLAYMNRLNKAAGG 328 >gi|238917860|ref|YP_002931377.1| putative translation factor [Eubacterium eligens ATCC 27750] gi|238873220|gb|ACR72930.1| putative translation factor [Eubacterium eligens ATCC 27750] Length = 351 Score = 325 bits (835), Expect = 4e-87, Method: Composition-based stats. Identities = 99/337 (29%), Positives = 154/337 (45%), Gaps = 26/337 (7%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D +A + L G +A PTETVYGL D+ + A ++Y K RP+ NPLI H++D+ Sbjct: 14 DKKIYEQAGQILREGGLVAFPTETVYGLGADALDAKASAKIYAAKGRPSDNPLIVHIADV 73 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + + A V +L LA+ FWPGPLT++L + T L T R+P Sbjct: 74 NALYDLAKEVPDKALVLAEKFWPGPLTMIL--KKKDKVPDSITGGLGTVAIRMPSHPVAA 131 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +LI + G +A PSAN SG+ S T +H+++ + I +II IG+ESTI+++ Sbjct: 132 ELIRSSGVYIAAPSANTSGKPSPTRAEHVIND-LSGRIDMIIQDDTVDIGVESTIIDL-S 189 Query: 186 EKKVRILRPGGLEIETLKRAIS-----VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 E+ ILRPG + + AI + + E P++PGM HYAP + V + Sbjct: 190 EEVPTILRPGYITQAMFEEAIGKTIIDPAIMGSLKEGVVPKAPGMKYKHYAPNADVTIVE 249 Query: 241 IHVNPREALI------------RFGNVPIKNIENAIISLNLSKTG---KLKEAAFNLFNY 285 I R + ++ I ++ G A NL+ Sbjct: 250 GQHEKVVQYINAQIAEKEAEGHRCAVMATDETKDKYICSDIVSAGHKDDELSVARNLYAI 309 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 ++ D + S +G A+ NRL +AA + Sbjct: 310 LRDFDKQNIEFVYSESFETKNVGQAVMNRLIKAAGHK 346 >gi|317471145|ref|ZP_07930516.1| Sua5/YciO/YrdC/YwlC family protein [Anaerostipes sp. 3_2_56FAA] gi|316901360|gb|EFV23303.1| Sua5/YciO/YrdC/YwlC family protein [Anaerostipes sp. 3_2_56FAA] Length = 351 Score = 325 bits (835), Expect = 4e-87, Method: Composition-based stats. Identities = 101/335 (30%), Positives = 162/335 (48%), Gaps = 25/335 (7%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 + A+R+A L G +A PTETVYGL A R+YE K RP+ NPLI H+ + Sbjct: 16 NKEAIREAAGLLREGKLVAFPTETVYGLGGSGWMEEAASRIYEAKGRPSDNPLILHIGSM 75 Query: 68 SMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK- 125 M+ + S P + FWPGPLT++L + + T L + R+P Sbjct: 76 EMIDEITSCVPGPAKKAMDAFWPGPLTVILP--KSDKVPYRVTGGLDSVAVRMPSHPAAL 133 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 L+ G P+A PSAN SG+ S T +H++ + +IP+++DGG ++G+ESTIV+ Sbjct: 134 ALLREAGVPVAAPSANTSGRPSPTKAEHVV-EDLDGKIPMVLDGGKVEVGVESTIVDFTG 192 Query: 186 EKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242 E V ILRPG + + L++A+S E+ V E + P++PGM HYAP++Q+ L Sbjct: 193 EVPV-ILRPGKITKDELEKALSTEVLMSTLSVKEDTVPRAPGMKYKHYAPKAQLVLILGE 251 Query: 243 VNPREA-------------LIRFGNVPIKNI---ENAIISLNLSKTGKLKEAAFNLFNYM 286 + A ++ G + + +A +++ ++ NL++ + Sbjct: 252 DREKVAEEITKRVRDCRKQCMKTGVIATEETMDRYDADEVISVGSRSHMETVTANLYDVL 311 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 + D I A+ NRL +AA Sbjct: 312 REFDHRDVDVIFSEGFEGEEYEEAVMNRLVKAAGH 346 >gi|157826525|ref|YP_001495589.1| putative translation factor protein [Rickettsia bellii OSU 85-389] gi|157801829|gb|ABV78552.1| Putative translation factor protein [Rickettsia bellii OSU 85-389] Length = 312 Score = 325 bits (835), Expect = 4e-87, Method: Composition-based stats. Identities = 115/315 (36%), Positives = 174/315 (55%), Gaps = 13/315 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A +F+ +G + PTETVYG+ D+ N A ++++ K RPA+NPLI HVS I K Sbjct: 2 IKQAVQFITSGKVVVFPTETVYGIGADATNQEACLKIFQFKNRPAVNPLIVHVSSIEQAK 61 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 + + ++ +A+ FW GPL++V+ L ++ TA LKT R+P +LI+ Sbjct: 62 EIGEFNYIAEKIAEKFWSGPLSIVVPLKENANVATAVTAGLKTIAIRIPSHPLALELIKQ 121 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII--DGGISKIGLESTIVNVQCEKK 188 G P+A PSAN S IS T + H+ E I+ SK GLESTIV+ Sbjct: 122 SGKPIAAPSANPSNYISPTRLDHVTRHFKENEEIFILTDKDYQSKYGLESTIVD-TTADI 180 Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248 ILR G + E L+ + +++ + ++PGML+ HY+P +RL A ++N +E Sbjct: 181 PTILREGFITAEVLETVLDIKINKA-SKNINIKAPGMLEKHYSPTVSIRLNATNLNDKEI 239 Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD----SGASSIAFSSIPN 304 + FG+ +K SLNLS G L EAA NL+ Y+++ DD IA + IP Sbjct: 240 GLNFGDSNLKGEY----SLNLSSKGDLTEAAANLYAYLRLLDDYAAAHNIEHIAVAPIPT 295 Query: 305 HGLGIAINNRLERAA 319 +G AIN+RL+RAA Sbjct: 296 INIGAAINDRLKRAA 310 >gi|313123399|ref|YP_004033658.1| translation factor (sua5 family) [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279962|gb|ADQ60681.1| Putative translation factor (Sua5 family) [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 331 Score = 325 bits (835), Expect = 4e-87, Method: Composition-based stats. Identities = 106/334 (31%), Positives = 161/334 (48%), Gaps = 19/334 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ I L +A L G +A PTETVYGL + +++++Y K RP+ NPL Sbjct: 1 MET-KIFKREQLDEAVSLLRKGELVAFPTETVYGLGALATRDDSVKKVYAAKGRPSDNPL 59 Query: 61 ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I V+D +M++ +A V + L K FWPGPLT++L L + +T L T FR Sbjct: 60 IVTVADEAMMRPYAKEVPERAEKLIKHFWPGPLTILL-LAKEGALPESATGGLPTVAFRC 118 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T LI G+P+ PSAN S + S T +H+ + +I I+DGG +++GLES Sbjct: 119 PDDQLTHDLIAKLGYPIVGPSANTSTKPSPTTAQHVY-HDLKGKIAGIVDGGETEVGLES 177 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQ 235 TIV++ +LRPG + E + + + E+ V + P++PGM HYAP +Q Sbjct: 178 TIVDLSVN-PAVVLRPGKITPEEISQVLGEEVLINRGQVSDKDVPKAPGMKYRHYAPSAQ 236 Query: 236 VRLR-------AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKI 288 V + + ++ ++ ++ NL K L EA NLF ++ Sbjct: 237 VYVVDQAETFAKLDLDVSCGVMATSDLLENLPVPEENKFNLGK--NLTEADHNLFAGLRY 294 Query: 289 ADDS-GASSIAFSSIPNHGLGIAINNRLERAAAP 321 DD SI +A NRL +AA Sbjct: 295 FDDRPEIKSIYVEGFDQGEESLAYMNRLNKAAGG 328 >gi|91206173|ref|YP_538528.1| putative translation factor protein [Rickettsia bellii RML369-C] gi|91069717|gb|ABE05439.1| Putative translation factor protein [Rickettsia bellii RML369-C] Length = 312 Score = 325 bits (835), Expect = 4e-87, Method: Composition-based stats. Identities = 115/315 (36%), Positives = 174/315 (55%), Gaps = 13/315 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A +F+ +G + PTETVYG+ D+ N A ++++ K RPA+NPLI HVS I K Sbjct: 2 IKQAVQFITSGKVVVFPTETVYGIGADATNQEACLKIFQFKNRPAVNPLIVHVSSIEQAK 61 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 + + ++ +A+ FW GPL++V+ L ++ TA LKT R+P +LI+ Sbjct: 62 EIGDFNYIAEKIAEKFWSGPLSIVVPLKENANVATAVTAGLKTIAIRIPSHPLALELIKQ 121 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII--DGGISKIGLESTIVNVQCEKK 188 G P+A PSAN S IS T + H+ E I+ SK GLESTIV+ Sbjct: 122 SGKPIAAPSANPSNYISPTRLDHVTRHFKENEEIFILTDKDYQSKYGLESTIVD-TTADI 180 Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248 ILR G + E L+ + +++ + ++PGML+ HY+P +RL A ++N +E Sbjct: 181 PTILREGFITAEVLETVLDIKINKA-SKNINIKAPGMLEKHYSPTVSIRLNATNLNDKEI 239 Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD----SGASSIAFSSIPN 304 + FG+ +K SLNLS G L EAA NL+ Y+++ DD IA + IP Sbjct: 240 GLNFGDSNLKGEY----SLNLSSKGDLTEAAANLYAYLRLLDDYAAAHNIEHIAVAPIPT 295 Query: 305 HGLGIAINNRLERAA 319 +G AIN+RL+RAA Sbjct: 296 INIGAAINDRLKRAA 310 >gi|300812486|ref|ZP_07092912.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496547|gb|EFK31643.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|325684406|gb|EGD26574.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 331 Score = 325 bits (834), Expect = 5e-87, Method: Composition-based stats. Identities = 106/334 (31%), Positives = 161/334 (48%), Gaps = 19/334 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ I L +A L G +A PTETVYGL + +++++Y K RP+ NPL Sbjct: 1 MET-KIFKREQLDEAVSLLREGELVAFPTETVYGLGALATRDDSVKKVYAAKGRPSDNPL 59 Query: 61 ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I V+D +M++ +A V + L K FWPGPLT++L L + +T L T FR Sbjct: 60 IVTVADEAMMRPYAKEVPERAEKLIKHFWPGPLTILL-LAKEGALPESATGGLPTVAFRC 118 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T LI G+P+ PSAN S + S T +H+ + +I I+DGG +++GLES Sbjct: 119 PDDQLTHDLIAKLGYPIVGPSANTSTKPSPTTAQHVY-HDLKGKIAGIVDGGETEVGLES 177 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQ 235 TIV++ +LRPG + E + + + E+ V + P++PGM HYAP +Q Sbjct: 178 TIVDLSVN-PAVVLRPGKITPEEISQVLGEEVLINRGQVSDKDVPKAPGMKYRHYAPSAQ 236 Query: 236 VRLR-------AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKI 288 V + + ++ ++ ++ NL K L EA NLF ++ Sbjct: 237 VYVVDQAETFAKLDLDVSCGVMATSDLLENLPVPEENKFNLGK--NLTEADHNLFAGLRY 294 Query: 289 ADDS-GASSIAFSSIPNHGLGIAINNRLERAAAP 321 DD SI +A NRL +AA Sbjct: 295 FDDRPEIKSIYVEGFDQGEESLAYMNRLNKAAGG 328 >gi|227519762|ref|ZP_03949811.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0104] gi|227072850|gb|EEI10813.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0104] Length = 340 Score = 325 bits (834), Expect = 6e-87, Method: Composition-based stats. Identities = 108/317 (34%), Positives = 175/317 (55%), Gaps = 23/317 (7%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLS 80 G +A PTETVYGL D+ N A++++Y++K RP+ NPLI HV+++ MVKK+ A++ ++ Sbjct: 21 GELVAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVA 80 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPLAIPS 139 L FWPGPLTL+ + + T L+T FR+P LIE PL PS Sbjct: 81 TKLVSAFWPGPLTLIFN-VPRDTFSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPS 139 Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC-EKKVRILRPGGLE 198 AN SG+ S T+ +H+ + +I I+D G ++IG+EST++++ + ILRPG + Sbjct: 140 ANTSGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAIT 198 Query: 199 IETLKRAIS-VELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVP 256 E L+ I V+++ + + ET+ P++PGM HY+P ++V + + +A I+ Sbjct: 199 KEQLESIIPRVKIDTHLISETAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQAKEQ 258 Query: 257 IKNI--------------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302 + I ENA + ++T +K A LF ++ D+ GA++I Sbjct: 259 QEKIGLFLSDEQAAQLDTENAFVYSYGAET--VKNATKELFAGLRALDEQGATTIFAQGF 316 Query: 303 PNHGLGIAINNRLERAA 319 GLG A NRL+++A Sbjct: 317 AETGLGTAYMNRLKKSA 333 >gi|332687007|ref|YP_004456781.1| YrdC/Sua5 family protein [Melissococcus plutonius ATCC 35311] gi|332371016|dbj|BAK21972.1| YrdC/Sua5 family protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA [Melissococcus plutonius ATCC 35311] Length = 344 Score = 325 bits (834), Expect = 6e-87, Method: Composition-based stats. Identities = 109/342 (31%), Positives = 174/342 (50%), Gaps = 18/342 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ + L A +F+ G IA PTETVYGL ++ + A++ +YE K RP+ NPL Sbjct: 1 MKTTQLFLEQELPIAAKFVKQGELIAFPTETVYGLGANALDEIAVKEVYEAKGRPSDNPL 60 Query: 61 ICHVSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I HV + +KK+ S P ++ LAK FWPGPLT++ ++ T + T L TA FR+ Sbjct: 61 IIHVETVEQIKKYVSNFPFIAEKLAKHFWPGPLTMIFNIKPGT-FPEVVTGGLTTAAFRI 119 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T +LI G PL PSAN SG+ S T +H+ + +I ++DGG ++IG+ES Sbjct: 120 PNNRLTLELIHQAGVPLVGPSANTSGKPSPTIAEHVY-HDLQGKIAGVLDGGATQIGIES 178 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISV--ELEYCVDETSTPQSPGMLKSHYAPRSQV 236 T++++ E ILRPG + + LK I ++ ++E P++PGM HY+P + V Sbjct: 179 TVLDLTTEVP-TILRPGLITKQELKVIIGKVAVDQHLLNEKEQPKAPGMKYKHYSPDTAV 237 Query: 237 RLRAIHVNPREALI----------RFGNVPIKNIENAIISLNLSKTGKLK-EAAFNLFNY 285 + ++ + +A+ F + I + + I+ S AA LF Sbjct: 238 WIISMPADWEKAIHLAKERRLKIGLFADEKIVDTYRSQITATFSFGEDTAINAAKYLFAG 297 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQSQR 327 ++ D I + +A NRL++AA + S + Sbjct: 298 LRELDQMAVDVIFAQGFAERSMALAYMNRLKKAAGQKVFSNQ 339 >gi|312127871|ref|YP_003992745.1| sua5/ycio/yrdc/ywlc family protein [Caldicellulosiruptor hydrothermalis 108] gi|311777890|gb|ADQ07376.1| Sua5/YciO/YrdC/YwlC family protein [Caldicellulosiruptor hydrothermalis 108] Length = 348 Score = 325 bits (834), Expect = 6e-87, Method: Composition-based stats. Identities = 113/336 (33%), Positives = 159/336 (47%), Gaps = 25/336 (7%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 D L KA L G +A PTETVYGL ++ A+ +++ K RP NPLI HVS Sbjct: 11 IDYKKLEKAALILREGGLVAFPTETVYGLGANALLKDAVDKIFLAKGRPQDNPLIVHVSS 70 Query: 67 ISMVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 M++ A + D L + FWPGPLT+VL I TA L T R+P Sbjct: 71 KEMLEMCAEITDERVYMLIERFWPGPLTIVLP--KKNVIADNVTAGLSTVGVRMPANKIA 128 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 +LI G P+A PSAN SG+ S T KH++ + ++ +IIDGG GLEST+V++ Sbjct: 129 LELIRLSGVPVAAPSANVSGKPSPTEAKHVI-EDLMGKVDIIIDGGKCSFGLESTVVDLS 187 Query: 185 CEKKVRILRPGGLEIETLKRAIS-VELEYCVDE---TSTPQSPGMLKSHYAPRSQVRLRA 240 EK V ILRPG + LK + +E V E + P+SPGM HYAP +++ + Sbjct: 188 GEKAV-ILRPGAISYFALKEVLGNIEYSKAVVEGLTGTVPRSPGMKYKHYAPDAKLIIVK 246 Query: 241 IHVNPREALI--RFGNVPIKNIENAIISLN-------------LSKTGKLKEAAFNLFNY 285 ++ R I + K I+ L KE NLF+ Sbjct: 247 GRIDKRIDKINEMKKKLEFKGHRVGILCFYETVHNFDSQYKLILGSMFDAKECERNLFSI 306 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 ++ + G I + +A+ NRL +AAA Sbjct: 307 LRKFNQLGVDYILCEWGEFNLEFLALENRLYKAAAN 342 >gi|312622677|ref|YP_004024290.1| sua5/ycio/yrdc/ywlc family protein [Caldicellulosiruptor kronotskyensis 2002] gi|312203144|gb|ADQ46471.1| Sua5/YciO/YrdC/YwlC family protein [Caldicellulosiruptor kronotskyensis 2002] Length = 348 Score = 325 bits (834), Expect = 6e-87, Method: Composition-based stats. Identities = 111/336 (33%), Positives = 160/336 (47%), Gaps = 25/336 (7%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 D L KA L G +A PTETVYGL ++ A+ +++ K RP NPLI H+S Sbjct: 11 IDYKKLEKAALILREGGLVAFPTETVYGLGANALLKDAVDKIFLAKGRPQDNPLIVHISS 70 Query: 67 ISMVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 M++ A + D L ++FWPGPLT+VL I TA L T R+P Sbjct: 71 KDMLEMCAEITDDRVYMLIEMFWPGPLTIVLP--KKNVIAENVTAGLSTVGVRMPANKIA 128 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 +LI G P+A PSAN SG+ S T KH++ + +I +IIDGG GLEST+V++ Sbjct: 129 LELIRLSGVPVAAPSANVSGKPSPTEAKHVI-EDLMGKIDIIIDGGKCSFGLESTVVDLS 187 Query: 185 CEKKVRILRPGGLEIETLKRAIS-VELEYCVDE---TSTPQSPGMLKSHYAPRSQVRLRA 240 E+ + ILRPG + LK + +E V E + P+SPGM HYAP +++ + Sbjct: 188 GERPL-ILRPGAISYFALKEVLGDIEYSKAVVEGLTGTVPRSPGMKYKHYAPDAKLIIVK 246 Query: 241 IHVNPREALIRF--GNVPIKNIENAIISLN-------------LSKTGKLKEAAFNLFNY 285 ++ R I + K + I+ L KE NLF+ Sbjct: 247 GRIDKRIDKINEIKKRLEFKGHKVGILCFYETAHNFESQYKLILGSMFDAKECGRNLFSI 306 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 ++ + G I +A+ NRL +AAA Sbjct: 307 LRKFNQLGVDYILCEWGNFDLEFLALENRLYKAAAN 342 >gi|290969301|ref|ZP_06560826.1| Sua5/YciO/YrdC/YwlC family protein [Megasphaera genomosp. type_1 str. 28L] gi|290780807|gb|EFD93410.1| Sua5/YciO/YrdC/YwlC family protein [Megasphaera genomosp. type_1 str. 28L] Length = 348 Score = 325 bits (834), Expect = 6e-87, Method: Composition-based stats. Identities = 107/347 (30%), Positives = 156/347 (44%), Gaps = 26/347 (7%) Query: 2 QIMSITD----SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 +++ ITD LR+A + G + PTETVYGL + + TA RR++E K RP+ Sbjct: 4 ELLKITDIEQQQELLRQAGACIRQGGLVVFPTETVYGLGANGLDETACRRIFEAKGRPSD 63 Query: 58 NPLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 NPLI V+D ++ + + PL+ L FWPGPLTLVL S + ++T L T Sbjct: 64 NPLILTVADRQGAEQISDRISPLAEKLMARFWPGPLTLVLPRRSC--VPDVATGGLDTVA 121 Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R P + ++ P+A PSAN S + S T L + + +IIDGG IG Sbjct: 122 VRCPDHDICRAFLQYAQVPVAGPSANLSTRPSPTTAAEAL-HDMDGRVQMIIDGGACHIG 180 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPR 233 +ESTIV +V ILRPGG+ E L + + + V P++PGM HYAP Sbjct: 181 VESTIVECTAADEVTILRPGGITPEMLAEVAAKVVLDTHLVSGKGVPKAPGMKYRHYAPE 240 Query: 234 SQVRLRAIHVNPREALIRFGNVPIKNIEN---------------AIISLNLSKTGKLKEA 278 + V+ ++ K A + G Sbjct: 241 APVQAFVGSEQAVIEAVQMAYTEAKAAGKTVGFLLSREVATQVGAPHTFIWGHHGDAAAL 300 Query: 279 AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325 A L+ + D I +P GLG+A+ NRL++AA Q+ Sbjct: 301 ANKLYTGLLFFDKERVDLILAEGVPAVGLGLAVMNRLKKAAGGHVQA 347 >gi|116491553|ref|YP_811097.1| translation factor SUA5 [Oenococcus oeni PSU-1] gi|290891158|ref|ZP_06554220.1| hypothetical protein AWRIB429_1610 [Oenococcus oeni AWRIB429] gi|116092278|gb|ABJ57432.1| translation factor SUA5 [Oenococcus oeni PSU-1] gi|290479122|gb|EFD87784.1| hypothetical protein AWRIB429_1610 [Oenococcus oeni AWRIB429] Length = 337 Score = 325 bits (834), Expect = 6e-87, Method: Composition-based stats. Identities = 106/336 (31%), Positives = 169/336 (50%), Gaps = 15/336 (4%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M ++ T A+ +A + +G +A PTETVYG+ D+ A+ +++ KKRP NPL Sbjct: 1 MTLVLKTSEKAIAEAANIMASGGVVAFPTETVYGIGADATKRDAVEKVFAAKKRPHDNPL 60 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 I VS+ M + A +D + L + FWPG LT++L L+ + TA L TA FR P Sbjct: 61 IVTVSNAEMASRFAKLDWRAEKLIENFWPGSLTMILPLIDQDILPDNVTAGLLTAAFRNP 120 Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 T+ LI +P+ PSAN S + S T +H+L + I +ID G ++IG+EST Sbjct: 121 KNDVTRHLITLLNNPIVGPSANLSTKPSPTTAEHVL-HDMDGRIDAVIDDGPTEIGVEST 179 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVEL-----EYCVDETSTPQSPGMLKSHYAPRS 234 IV++ K+ ILRPG + + + + ++ + P++PGM HYAP Sbjct: 180 IVDLSV-KQATILRPGAVTADQVSSVLGEKVIDPTGPISLAANIAPKAPGMKYRHYAPSK 238 Query: 235 QVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKT--GKLKEAA----FNLFNYMKI 288 V + N + +E+++ L L + L E A LF+ ++ Sbjct: 239 AVVIFNQTDLKDLKQQLKKNDAVVALEDSLNQLKLDRRHSWSLGETADSATEELFSALRF 298 Query: 289 ADDS-GASSIAFSSIPNHGLGIAINNRLERAAAPRN 323 DD +I S+P+ G+G A NRLE++A ++ Sbjct: 299 FDDQKDIQTIYVESLPSEGIGEAYMNRLEKSAGGQH 334 >gi|157829148|ref|YP_001495390.1| hypothetical protein A1G_07205 [Rickettsia rickettsii str. 'Sheila Smith'] gi|157801629|gb|ABV76882.1| hypothetical protein A1G_07205 [Rickettsia rickettsii str. 'Sheila Smith'] Length = 311 Score = 325 bits (834), Expect = 7e-87, Method: Composition-based stats. Identities = 123/315 (39%), Positives = 173/315 (54%), Gaps = 13/315 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + KA +F+ +G + PTETVYG+ D+ N A ++++ K+RPA+NPLI HVS I K Sbjct: 2 INKAVQFIKSGKVVVFPTETVYGIGADATNNEACLKIFQFKERPAINPLIVHVSSIEQAK 61 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIET 130 + D L+ +A+ FW GPL++V+ L +I P TA L T R+P +LI+ Sbjct: 62 EIGEFDDLATKIAEKFWSGPLSIVVPLKENANIAPSVTAGLNTIALRIPSYPVALELIKQ 121 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI--SKIGLESTIVNVQCEKK 188 G P+A PSAN S IS TN +H+ + I+ I SK GLESTI++ Sbjct: 122 SGIPIAAPSANPSNYISPTNAEHVTKHFKDNQEIFILAPEIYQSKYGLESTIID-TTTVT 180 Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248 ILR G + E L + +E+ ETS ++ GML HY+P+ VRL AI++ +E Sbjct: 181 PTILREGFITAEILGEILGIEV-LKASETSIIKASGMLAKHYSPKVPVRLNAINLEDKEI 239 Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD----SGASSIAFSSIPN 304 + F N + SLNLS G EAA NL+ Y++I DD IA S IP Sbjct: 240 GLNFSNSNL----TGRFSLNLSVKGDFIEAAANLYAYLRILDDYAASHDVRGIAVSPIPQ 295 Query: 305 HGLGIAINNRLERAA 319 +G AIN+RL+RAA Sbjct: 296 VNIGAAINDRLKRAA 310 >gi|296449033|ref|ZP_06890823.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium difficile NAP08] gi|296879856|ref|ZP_06903829.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium difficile NAP07] gi|296262126|gb|EFH08931.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium difficile NAP08] gi|296429145|gb|EFH15019.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium difficile NAP07] Length = 353 Score = 325 bits (833), Expect = 7e-87, Method: Composition-based stats. Identities = 94/331 (28%), Positives = 157/331 (47%), Gaps = 22/331 (6%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 ++ + L G + PTETVYGL ++ + A++++YE K RP+ NPLI H+ + Sbjct: 23 EEIKIQAKLLREGKTVIFPTETVYGLGANALDENAVKKIYEAKGRPSDNPLIVHIYEKEE 82 Query: 70 VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 V A + + + + WPGP+T++L+ I ++ L T R+P + + Sbjct: 83 VYDLAKDISDKAKLVIEKLWPGPITIILN--KKDIIPYKTSGGLDTVAIRMPSNIIARAI 140 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I+ G P+A PSAN SG+ S T KH+ + + I+ GG S GLEST++++ E+ Sbjct: 141 IKEAGIPIAAPSANISGRPSPTKAKHVY-EEMNGRVDGIVLGGDSNFGLESTVLDLT-EE 198 Query: 188 KVRILRPGGLEIETLKRAIS-VELEYCVDETS---TPQSPGMLKSHYAPRSQVRLRAIHV 243 ILRPG + E L+ + V+L+ + + ++PGM HY+P + V + + Sbjct: 199 TPMILRPGSITKEVLEELLGEVKLDPSLSKKEDNQKAKAPGMKYKHYSPNADVYIISGKR 258 Query: 244 N------------PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291 RE ++ G + + L+E A NLF+ + D Sbjct: 259 ENVAIKINDMIKSNREKGLKTGVMCTSKNREFYDGEVIDLGNSLEEVASNLFDALIEMDK 318 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 I P G+G AI NRL ++A + Sbjct: 319 KSVDVIYSEEFPKTGVGQAIMNRLLKSAGYK 349 >gi|302532178|ref|ZP_07284520.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces sp. C] gi|302441073|gb|EFL12889.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces sp. C] Length = 324 Score = 325 bits (833), Expect = 7e-87, Method: Composition-based stats. Identities = 116/326 (35%), Positives = 169/326 (51%), Gaps = 16/326 (4%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 T + + A L AG +A+PTETVYGL D+ N A+ R++E+K RP+ +PLI H+ Sbjct: 3 TRTTDIAAAAGVLRAGGLVALPTETVYGLGADAENADAVNRIFEVKGRPSSHPLIVHIGG 62 Query: 67 ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 + V P + LA+ FWPGPLTLVL + +T L+T RVP Sbjct: 63 AEQLDDWVEEVSPTARLLAERFWPGPLTLVLRR--GRRVPLEATGGLETVAVRVPDHPVA 120 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 +L+ +G + PSANR G +S T H+ + + + + L++DGG ++G+ESTIV+V Sbjct: 121 LELLAAFGGGVTAPSANRFGSVSPTTADHV-GAELGEAVDLVLDGGPCQVGVESTIVDVT 179 Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL------ 238 + ILRPGG+ E L+ + L V TS + PG SHYAPR++V L Sbjct: 180 GDVP-SILRPGGVTREDLEAVLGFPL--AVPSTSQVRVPGQHPSHYAPRARVVLVEPETV 236 Query: 239 RAIHVNPREALIRFGNVPIKNIENAIISLN--LSKTGKLKEAAFNLFNYMKIADDSGASS 296 A +E R G + + + A + + + G A L+ +++ DD G Sbjct: 237 VAEAERAQEQGHRVGLLLPRPFDGADVKAHAVVEVPGSPAAYARGLYGFLRELDDRGCDL 296 Query: 297 IAFSSIPNHGLGIAINNRLERAAAPR 322 I S GLG+AI NRL RAA PR Sbjct: 297 IVASLPAEEGLGLAIANRLRRAAGPR 322 >gi|255657436|ref|ZP_05402845.1| hypothetical protein CdifQCD-2_17451 [Clostridium difficile QCD-23m63] Length = 346 Score = 325 bits (833), Expect = 7e-87, Method: Composition-based stats. Identities = 94/331 (28%), Positives = 157/331 (47%), Gaps = 22/331 (6%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 ++ + L G + PTETVYGL ++ + A++++YE K RP+ NPLI H+ + Sbjct: 16 EEIKIQAKLLREGKTVIFPTETVYGLGANALDENAVKKIYEAKGRPSDNPLIVHIYEKEE 75 Query: 70 VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 V A + + + + WPGP+T++L+ I ++ L T R+P + + Sbjct: 76 VYDLAKDISDKAKLVIEKLWPGPITIILN--KKDIIPYKTSGGLDTVAIRMPSNIIARAI 133 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I+ G P+A PSAN SG+ S T KH+ + + I+ GG S GLEST++++ E+ Sbjct: 134 IKEAGIPIAAPSANISGRPSPTKAKHVY-EEMNGRVDGIVLGGDSNFGLESTVLDLT-EE 191 Query: 188 KVRILRPGGLEIETLKRAIS-VELEYCVDETS---TPQSPGMLKSHYAPRSQVRLRAIHV 243 ILRPG + E L+ + V+L+ + + ++PGM HY+P + V + + Sbjct: 192 TPMILRPGSITKEVLEELLGEVKLDPSLSKKEDNQKAKAPGMKYKHYSPNADVYIISGKR 251 Query: 244 N------------PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291 RE ++ G + + L+E A NLF+ + D Sbjct: 252 ENVAIKINDMIKSNREKGLKTGVMCTSKNREFYDGEVIDLGNSLEEVASNLFDALIEMDK 311 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 I P G+G AI NRL ++A + Sbjct: 312 KSVDVIYSEEFPKTGVGQAIMNRLLKSAGYK 342 >gi|319788962|ref|YP_004090277.1| Sua5/YciO/YrdC/YwlC family protein [Ruminococcus albus 7] gi|315450829|gb|ADU24391.1| Sua5/YciO/YrdC/YwlC family protein [Ruminococcus albus 7] Length = 338 Score = 325 bits (833), Expect = 8e-87, Method: Composition-based stats. Identities = 104/333 (31%), Positives = 168/333 (50%), Gaps = 26/333 (7%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D N++ A E + AG + IPTETVYGL ++ + A+ +++ K RPA NPLI H+S Sbjct: 10 DENSINTAAELIRAGEVVGIPTETVYGLGANAFDEDAVHKIFAAKGRPADNPLIVHISSF 69 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TK 125 +K + L+ A+ FWPGPLT+++ + I +++ L T R+P + Sbjct: 70 EEIKPLVTEIPALAEKCAEKFWPGPLTMIMP--KSDKIPLVTSGGLDTVGIRMPSNATAR 127 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +I+ G P+A PSAN SG S T H+L+ + IP I+DGG +G+EST+++ + Sbjct: 128 AIIKASGCPIAAPSANLSGSPSPTTAMHVLND-MDGRIPAIVDGGACGVGVESTVISFEG 186 Query: 186 EKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 +R+LRPG + +E LK + + + E + +SPGM HYAP+++V + Sbjct: 187 NG-IRLLRPGFISVEDLKEITENVMVDKGVLEMLGEGAKVRSPGMKYKHYAPKAEVTIID 245 Query: 241 IHVNPREALIR-----------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIA 289 A R F + + L + +E A +LF+ ++ Sbjct: 246 GSSEQFNAFCRENASADDVLMVFTEADAQGLPQRKTVLGATD----EEQAQHLFDALRGF 301 Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 D+ A + G+G+A+ NRL RAAA R Sbjct: 302 DEMCAEKVWARCPRKTGVGLAVYNRLLRAAAFR 334 >gi|259046349|ref|ZP_05736750.1| Sua5/YciO/YrdC/YwlC family protein [Granulicatella adiacens ATCC 49175] gi|259036986|gb|EEW38241.1| Sua5/YciO/YrdC/YwlC family protein [Granulicatella adiacens ATCC 49175] Length = 336 Score = 325 bits (833), Expect = 8e-87, Method: Composition-based stats. Identities = 114/336 (33%), Positives = 169/336 (50%), Gaps = 19/336 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ T N L A + L G ++ PTETVYGL + + A+ +++E K RP+ NPL Sbjct: 1 METQIFTKEN-LDIAAKALQQGEIVSFPTETVYGLGAIATSQEAVLKVFEAKGRPSDNPL 59 Query: 61 ICHVSDISMV-KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I H+SDI + V ++L LAK FWPGPLT++L P +A L T FR+ Sbjct: 60 IVHISDIQQMTSTVEEVPEIALTLAKAFWPGPLTMILKAKPGI-YAPALSAGLPTVSFRM 118 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T +LI G PL PSAN S + S T V+H+ + I I+DGG S +G+ES Sbjct: 119 PNHPLTLELITKVGIPLVGPSANLSTKPSPTKVQHVF-EDMNGRIRGIVDGGSSTVGVES 177 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISV---ELEYCVDETSTPQSPGMLKSHYAPRSQ 235 T++++ E+ ILRPG + E ++ I + E P+SPGM HYAP++ Sbjct: 178 TVIDLTNEEGPVILRPGVITKEQIESVIGPIQSSVTTKTGEREIPKSPGMKYRHYAPKTP 237 Query: 236 VRLRAIHVNPREALIR--------FGNVPIKNIENAIISL--NLSKTG-KLKEAAFNLFN 284 V + V I+ G + I +A+ S + K G + + +LF+ Sbjct: 238 VLVVEGAVESFTKAIQEAQNNGKTVGIMAQNAIVDAVESRVKGIYKMGTSVDDMNRSLFD 297 Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ D I P G+GIA NRL++AA+ Sbjct: 298 ALRTLDHLELDIILAQGAPEEGVGIAYMNRLKKAAS 333 >gi|149204213|ref|ZP_01881181.1| Sua5/YciO/YrdC family protein [Roseovarius sp. TM1035] gi|149142655|gb|EDM30700.1| Sua5/YciO/YrdC family protein [Roseovarius sp. TM1035] Length = 315 Score = 325 bits (833), Expect = 8e-87, Method: Composition-based stats. Identities = 134/318 (42%), Positives = 176/318 (55%), Gaps = 14/318 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D A AG +A PTETVYGL D+R+ A+ R++E K RP NPLI HV Sbjct: 11 DLAGFATASAIWSAGGLVAFPTETVYGLGADARDDRAVARIFEAKGRPRFNPLIVHVESD 70 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126 +++ + + LA FWPGPLTLVL L + + PL TA L T RVP + Sbjct: 71 DAARRYVTWSDAAEILASAFWPGPLTLVLPLRADAGLSPLVTAELPTLAIRVPEHPVARG 130 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+ T+G P+A PSAN SG+IS T H+L + + I +I+GG +G+ESTIV + E Sbjct: 131 LLSTFGGPVAAPSANPSGRISPTTAAHVL-AGLSGRIEGVIEGGACAVGVESTIVGLAGE 189 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246 + LRPGG+ +E ++ A+ + L V +PG L+SHYAP + VRL A Sbjct: 190 PCL--LRPGGVPVEAIEVALGMPLARHV-AGDPLVAPGQLQSHYAPGAPVRLNAQDRRAG 246 Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306 E L+ FG V +NLS +G L EAA NLF ++ D A IA S IP G Sbjct: 247 ELLLGFGAV--------DADMNLSPSGDLIEAAANLFGHLHALDARDAP-IAVSPIPEVG 297 Query: 307 LGIAINNRLERAAAPRNQ 324 LG AIN+RL RAAAPR Sbjct: 298 LGRAINDRLRRAAAPRGA 315 >gi|154247193|ref|YP_001418151.1| Sua5/YciO/YrdC/YwlC family protein [Xanthobacter autotrophicus Py2] gi|154161278|gb|ABS68494.1| Sua5/YciO/YrdC/YwlC family protein [Xanthobacter autotrophicus Py2] Length = 345 Score = 324 bits (832), Expect = 9e-87, Method: Composition-based stats. Identities = 128/316 (40%), Positives = 179/316 (56%), Gaps = 4/316 (1%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +++ A+ +A L G +A PTETVYGL D+ NP A+ LY K RPA NPLI Sbjct: 13 RLLPAAAPGAVEEAARLLSGGGLVAFPTETVYGLGADAANPQAVAALYAAKGRPAFNPLI 72 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 H D + ++ S + + LA+ FWPGPLTLV+ + L+ A L T RVP Sbjct: 73 AHTKDAASARRLGSFNRAANILAERFWPGPLTLVVPYAGGDGVCELARAGLDTVALRVPA 132 Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 LI +G + PSANRSG +S T H++ + I ++DGG + +G+ESTI Sbjct: 133 HGDAAALIAAFGGAVVAPSANRSGHVSPTTAAHVM-DDLSGRIDAVVDGGPTPVGVESTI 191 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCV-DETSTPQSPGMLKSHYAPRSQVRLR 239 ++V E V +LRPGGL E ++ A+ + V + + P +PG L SHYAPR+ +RL Sbjct: 192 LDVTGEVPV-LLRPGGLAREEIEAALGHPIARPVATDDARPLAPGRLASHYAPRAALRLD 250 Query: 240 AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF 299 A HV P EAL+ F + NA L+LS +G L EAA L+ ++ D SGAS+IA Sbjct: 251 ATHVAPGEALLTFAGMAPDGTPNAGSVLDLSPSGDLTEAAARLYGALRALDASGASAIAV 310 Query: 300 SSIPNHGLGIAINNRL 315 +P GLG AI++RL Sbjct: 311 VPLPRTGLGEAISDRL 326 >gi|114704376|ref|ZP_01437284.1| Sua5/YciO/YrdC/YwlC protein family:SUA5:SUA5/yciO/yrdC, N-terminal [Fulvimarina pelagi HTCC2506] gi|114539161|gb|EAU42281.1| Sua5/YciO/YrdC/YwlC protein family:SUA5:SUA5/yciO/yrdC, N-terminal [Fulvimarina pelagi HTCC2506] Length = 319 Score = 324 bits (832), Expect = 1e-86, Method: Composition-based stats. Identities = 129/306 (42%), Positives = 184/306 (60%), Gaps = 3/306 (0%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 L G + +PTETVYGLA D+ N A+ +++ +K+RP+ NPLI HV + A Sbjct: 17 RLLCEGECVVVPTETVYGLAADATNGEAVAKIFAVKERPSFNPLISHVYGRELAALLAHF 76 Query: 77 DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLA 136 + L + FWPGPLT+V L S +HPL+TA L T R P G +L PLA Sbjct: 77 GEIEHRLTEAFWPGPLTIVAPLRSDGGVHPLATAGLDTIALRQPVGVMAELSARLDRPLA 136 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SG++S T+ H+ ++S+ + LI+DGG + +G+ESTIV + + ++ +LRPGG Sbjct: 137 APSANLSGRVSPTSAGHV-AASLGDRVSLILDGGTTSVGVESTIVRAESD-RIVLLRPGG 194 Query: 197 LEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVP 256 + E + A + +E + +T+ +PG + SHYAP +VRL A V P E LI FG P Sbjct: 195 VPREAIVEATGLPVETIL-QTTKISAPGQMSSHYAPFGRVRLDAASVEPGEWLIAFGPEP 253 Query: 257 IKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLE 316 ++ +A +NLS +G L+EAA NLF + D +IA IPN G+G AIN+RL+ Sbjct: 254 VRGESSASGVVNLSPSGNLEEAAANLFGLLARLDRPDVPAIAVVPIPNEGIGEAINDRLK 313 Query: 317 RAAAPR 322 RAAAPR Sbjct: 314 RAAAPR 319 >gi|118586288|ref|ZP_01543743.1| translational factor, SUA5 family [Oenococcus oeni ATCC BAA-1163] gi|118433283|gb|EAV39994.1| translational factor, SUA5 family [Oenococcus oeni ATCC BAA-1163] Length = 337 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 106/336 (31%), Positives = 169/336 (50%), Gaps = 15/336 (4%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M ++ T A+ +A + +G +A PTETVYG+ D+ A+ +++ KKRP NPL Sbjct: 1 MTLVLKTSEKAIAEAANIMASGGVVAFPTETVYGIGADATKRDAVEKVFAAKKRPHDNPL 60 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 I VS+ M + A +D + L + FWPG LT++L L+ + TA L TA FR P Sbjct: 61 IVTVSNAEMAARFAKLDWRAEKLIENFWPGSLTMILPLIDQDILPDNVTAGLLTAAFRNP 120 Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 T+ LI +P+ PSAN S + S T +H+L + I +ID G ++IG+EST Sbjct: 121 KNDVTRHLITLLNNPIVGPSANLSTKPSPTTAEHVL-HDMDGRIDAVIDDGPTEIGVEST 179 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVEL-----EYCVDETSTPQSPGMLKSHYAPRS 234 IV++ K+ ILRPG + + + + ++ + P++PGM HYAP Sbjct: 180 IVDLSV-KQATILRPGAVTADQVSSVLGEKVIDPTGPISLAANIAPKAPGMKYRHYAPSK 238 Query: 235 QVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKT--GKLKEAA----FNLFNYMKI 288 V + N + +E+++ L L + L E A LF+ ++ Sbjct: 239 AVVIFNQTDLKDLKQQLKKNDAVVALEDSLNQLKLDRRHSWSLGETADSATEELFSALRF 298 Query: 289 ADDS-GASSIAFSSIPNHGLGIAINNRLERAAAPRN 323 DD +I S+P+ G+G A NRLE++A ++ Sbjct: 299 FDDQKDIQTIYVESLPSEGIGEAYMNRLEKSAGGQH 334 >gi|315168546|gb|EFU12563.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX1341] Length = 340 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 106/317 (33%), Positives = 175/317 (55%), Gaps = 23/317 (7%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLS 80 G +A PTETVYGL D+ N A++++Y++K RP+ NPLI HV+++ MVKK+ A++ ++ Sbjct: 21 GELVAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVA 80 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPLAIPS 139 L FWPGPLTL+ + + + T L+T FR+P LIE PL PS Sbjct: 81 TKLVSAFWPGPLTLIFN-VPSDTFSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPS 139 Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC-EKKVRILRPGGLE 198 AN SG+ S T+ +H+ + +I I+D G ++IG+EST++++ + ILRPG + Sbjct: 140 ANTSGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAIT 198 Query: 199 IETLKRAIS-VELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVP 256 E L+ I V+++ + + ET+ P++PGM HY+P ++V + + +A I+ Sbjct: 199 KEQLESIIPQVKIDTHLISETAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQAKEQ 258 Query: 257 IKNI--------------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302 + I ENA + ++T ++ A LF ++ D+ A++I Sbjct: 259 QEKIGLFLSDEQAAQLDTENAFVYSYGAET--VENATKELFAGLRALDEQRATTIFAQGF 316 Query: 303 PNHGLGIAINNRLERAA 319 GLG A NRL+++A Sbjct: 317 AETGLGTAYMNRLKKSA 333 >gi|209964929|ref|YP_002297844.1| Sua5 [Rhodospirillum centenum SW] gi|209958395|gb|ACI99031.1| Sua5 [Rhodospirillum centenum SW] Length = 326 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 126/306 (41%), Positives = 165/306 (53%), Gaps = 9/306 (2%) Query: 21 AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80 G +A PTETVYGL D+ N A+ ++E K RP NPLI HV D + +VD + Sbjct: 26 EGGLVAFPTETVYGLGADAGNDRAVASIFEAKGRPHFNPLIVHVPDDGAAGRLVTVDERA 85 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPLAIPS 139 H +++WPGPLTLVL + L +A L T R P + L+ G P+A PS Sbjct: 86 RHAMEMWWPGPLTLVLPRRPDAPLSLLVSAGLDTVAVRCPGHPVARALLAAAGRPVAAPS 145 Query: 140 ANRSGQISITNVKHILSSSI---CKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 ANRSG +S T H+ ++ LI+ GG IGLEST++++ E+ + +LRPG Sbjct: 146 ANRSGHVSPTTPLHVAEEFPDGAGGKLRLILAGGRCPIGLESTVLDLTGERPL-LLRPGS 204 Query: 197 LEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVP 256 + E L+ + ++PGML SHYAP VRL A P EA + FG P Sbjct: 205 VTREELEAVLGPVDR--ATAADGVKAPGMLTSHYAPALPVRLEAAAPEPDEAFLAFG--P 260 Query: 257 IKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLE 316 + I LNLS TG L EAA NLF ++ D GA IA +P GLG AIN+RL Sbjct: 261 DQFIRGGRERLNLSPTGDLHEAAANLFAMLRALDKPGARGIAVMPVPETGLGAAINDRLR 320 Query: 317 RAAAPR 322 RAAAPR Sbjct: 321 RAAAPR 326 >gi|300172698|ref|YP_003771863.1| putative translation factor [Leuconostoc gasicomitatum LMG 18811] gi|299887076|emb|CBL91044.1| Putative translation factor (Sua5 family) [Leuconostoc gasicomitatum LMG 18811] Length = 335 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 104/328 (31%), Positives = 171/328 (52%), Gaps = 16/328 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 SN +++A E L AG +A PTETVYGL D+ N TA+++++ K RPA NPLI ++D Sbjct: 8 SNDIKRAGELLRAGEVVAFPTETVYGLGADATNETAVKKVFTAKGRPADNPLIMTIADEK 67 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + + + L FWPG LT++L + + + T L+T FR+P + + Sbjct: 68 QLDEFVLISQAARQLMTAFWPGSLTIILPIKPKK-VAMIVTGGLQTVAFRLPDNDVARVV 126 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I G P+ PSAN SG+ S T +H+ + +I I+D G ++IG+EST++++ Sbjct: 127 IRDAGVPIVGPSANTSGKPSPTTAQHVW-HDMNGKIAAIVDDGPTQIGVESTVIDMSANV 185 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETS-----TPQSPGMLKSHYAPRSQVRL--RA 240 ILRPG + + L+ + V + TS TP++PGM HYAP +V + R Sbjct: 186 P-TILRPGAVTQQQLQDVLGVTVIDATSTTSVASDVTPKAPGMKYRHYAPDKKVVMFDRL 244 Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGK----LKEAAFNLFNYMKIADDS-GAS 295 ++ +L V ++ ++ L+L ++ L+ A LF ++ DD + Sbjct: 245 DAIDLMHSLQTHDVVMAQDTTIEVMQLSLEQSWSLGETLETATEQLFAGLRFYDDEAQVA 304 Query: 296 SIAFSSIPNHGLGIAINNRLERAAAPRN 323 +I + G+G A NNRL +AA + Sbjct: 305 TIYVEKMSPIGIGKAFNNRLAKAAGNQE 332 >gi|238927404|ref|ZP_04659164.1| Sua5/YciO/YrdC/YwlC family protein [Selenomonas flueggei ATCC 43531] gi|238884686|gb|EEQ48324.1| Sua5/YciO/YrdC/YwlC family protein [Selenomonas flueggei ATCC 43531] Length = 350 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 113/345 (32%), Positives = 169/345 (48%), Gaps = 28/345 (8%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 ++ S + +A + G +A PTETVYGL + + A R+YE K RP+ NPLI Sbjct: 4 EVCSPVLEKDIARAAALIRDGQLVAFPTETVYGLGANGLDAAACARIYEAKGRPSDNPLI 63 Query: 62 CHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 H++D+SM+ + A P + HL F PGP+T+V+ + PL T L T R P Sbjct: 64 LHIADLSMLNETAEAVPSTAAHLLTAFAPGPITVVVP--KAVHVPPLVTGGLSTVGVRCP 121 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 ++ I G P+A PSAN SG+ S T + + + IPLI+DGG G+EST Sbjct: 122 AHDIARRFIRAAGVPIAAPSANTSGRPSPTAAAMVY-ADMAGRIPLILDGGSCSFGVEST 180 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRA---ISVELEYCV-DETSTPQSPGMLKSHYAPRSQ 235 IV+ E +V ILRPG + E + I V ++ + E + P++PGM +HYAPR Sbjct: 181 IVDCTEEGRVTILRPGAVTYEMIAAEFPHIEVRMDTALSSENAAPRAPGMKYTHYAPRVP 240 Query: 236 V-----------------RLRAIHVNPREALIRFGN--VPIKNIENAIISLNLSKTGKLK 276 + LR R ALI +K + A+ + + G Sbjct: 241 LTVFAGTGSDVTGALREEILRRTAAGERPALIASNETITALKGLIPAVYTYHCGARGNHS 300 Query: 277 EAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 A L++ ++ DD+ A+S+ GLG+AI NRL +A+ Sbjct: 301 AFASCLYDALRHFDDTAATSLLAEGTGAVGLGLAIMNRLRKASGG 345 >gi|255283090|ref|ZP_05347645.1| Sua5/YciO/YrdC/YwlC family protein [Bryantella formatexigens DSM 14469] gi|255266392|gb|EET59597.1| Sua5/YciO/YrdC/YwlC family protein [Bryantella formatexigens DSM 14469] Length = 348 Score = 323 bits (830), Expect = 1e-86, Method: Composition-based stats. Identities = 106/336 (31%), Positives = 167/336 (49%), Gaps = 25/336 (7%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 D A+ +A L AG +A PTETVYGL ++ + TA ++Y K RP+ NPLI H++ Sbjct: 12 IDEAAIAQAGRILQAGGLVAFPTETVYGLGANALDETASGKIYRAKGRPSDNPLIVHIAR 71 Query: 67 ISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFT 124 + + + A+V P + LA+ FWPGPLT++ + +T L+T R+P Sbjct: 72 MEDLYRIAAVVPEKAERLAEKFWPGPLTMIFPKKDC--VPYTTTGGLETVAVRMPEHPVA 129 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 LI+ G +A PSAN SG+ S T +H+ + + +I +IIDGG IG+ESTIV++ Sbjct: 130 LALIKAGGGFVAAPSANSSGRPSPTRAQHV-AEDMTGKIEMIIDGGSVGIGVESTIVDMS 188 Query: 185 CEKKVRILRPGGLEIETLKRAIS-VELEYCV---DETSTPQSPGMLKSHYAPRSQVRLRA 240 + + ILRPG + E L+ I V + + D T+ P++PGM HYAP++ + + Sbjct: 189 GDVPM-ILRPGYINREMLEETIGEVGTDPAISGEDTTARPKAPGMKYRHYAPKADMLIVE 247 Query: 241 IHV--------NPREALIRFGNVP-------IKNIENAIISLNLSKTGKLKEAAFNLFNY 285 E ++ G +P K+ I ++ + +LF Sbjct: 248 GEEARVVSRINELVEKELKEGRMPGIIASEETKDRYVGGIVRSIGSRMDELSISRHLFGV 307 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 ++ D S I + +G AI NRL +AA Sbjct: 308 LREFDSQNVSRIYSEAFDTPVMGQAIMNRLLKAAGH 343 >gi|262045802|ref|ZP_06018766.1| Sua5 family translation factor [Lactobacillus crispatus MV-3A-US] gi|260573761|gb|EEX30317.1| Sua5 family translation factor [Lactobacillus crispatus MV-3A-US] Length = 333 Score = 323 bits (830), Expect = 2e-86, Method: Composition-based stats. Identities = 107/334 (32%), Positives = 159/334 (47%), Gaps = 19/334 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ I + + A + L G +A PTETVYGL + +++ +Y K RP+ NPL Sbjct: 1 MET-KIFKKDQINDAVKLLAKGELVAFPTETVYGLGAIATKEKSVKGVYAAKGRPSDNPL 59 Query: 61 ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I VSD M+ K+A V + L K FWPGPLTL+L + T + T L T FR Sbjct: 60 IVTVSDEEMMAKYAKEVPERAKKLIKHFWPGPLTLLLFVKPGT-LPDAVTGGLDTVAFRC 118 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T LI G+P+ PSAN S + S T +H+ + +I IID G +++GLES Sbjct: 119 PDDQLTHDLIAKLGYPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDDGPTRVGLES 177 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQ 235 TI+++ E + +LRPG + E L + ++ V + P++PGM HYAP Sbjct: 178 TIIDLSVETPI-VLRPGEITPEELSEVLGEKVLINTGKVSDKDIPKAPGMKYRHYAPSEP 236 Query: 236 VRLRAIHVNPREALIRFG-NVPIKNIENAIISLNLSKT------GKLKEAAFNLFNYMKI 288 V + A I F + + + + +NL + L +A NLF ++ Sbjct: 237 V--VVVDDPADFAKIDFNEKIGVAALAPVLAKINLPQANKFDLGNNLVDADHNLFGGLRY 294 Query: 289 ADDS-GASSIAFSSIPNHGLGIAINNRLERAAAP 321 DD +I +A NRL +AA Sbjct: 295 FDDQDDIETIYVQGFHEGEESLAYMNRLNKAAGG 328 >gi|218135384|ref|ZP_03464188.1| hypothetical protein BACPEC_03289 [Bacteroides pectinophilus ATCC 43243] gi|217990769|gb|EEC56780.1| hypothetical protein BACPEC_03289 [Bacteroides pectinophilus ATCC 43243] Length = 353 Score = 323 bits (830), Expect = 2e-86, Method: Composition-based stats. Identities = 107/348 (30%), Positives = 172/348 (49%), Gaps = 34/348 (9%) Query: 2 QIMSITDSNAL--RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 QI +AL KA + L +G +A PTETVYGL D+ N A R++Y K RP+ NP Sbjct: 7 QITGNESEDALIYEKASKILRSGGLVAFPTETVYGLGGDALNKDASRKIYAAKGRPSDNP 66 Query: 60 LICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 LI H++D + + K A V +L LA F PGP+T++L + +T L T R Sbjct: 67 LIVHIADRNDLYKLAEEVPETALKLADAFMPGPITIILKKKEC--VPGETTGGLDTVAIR 124 Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 +P ++I G +A PSAN SG+ S T K+++ + ++ +II IG+E Sbjct: 125 MPRHPVAARMIRESGVYVAAPSANTSGRPSPTKAKYVI-EDLNGKVDMIIADDTVDIGIE 183 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCVDETS------TPQSPGMLKSHY 230 STIV++ E+ +LRPG + +E L++ + VE++ V+ + P++PGM HY Sbjct: 184 STIVDL-SEEVPTVLRPGYITLEMLRKVLGRVEIDKAVEAGNILASDIAPKAPGMKYRHY 242 Query: 231 APRSQVRLRAIHVNPREALIRFGNVPIKNIENAII-----------------SLNLSKTG 273 AP++++ + + + + + + K +E+ +L Sbjct: 243 APKAELTIVSGNEDS--VAQKINELVSKRLEDGAKVGIMTTDENIYRYTKGEVRSLGLRA 300 Query: 274 KLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 A NLF ++ DD GA I + N +G A+ NRL +AA Sbjct: 301 DEATVAKNLFAVLREFDDIGAEYIYSEAFANSNVGQAVMNRLIKAAGH 348 >gi|293381671|ref|ZP_06627652.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus crispatus 214-1] gi|290921718|gb|EFD98739.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus crispatus 214-1] Length = 334 Score = 323 bits (830), Expect = 2e-86, Method: Composition-based stats. Identities = 107/334 (32%), Positives = 158/334 (47%), Gaps = 19/334 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ I + + A + L G +A PTETVYGL + +++ +Y K RP+ NPL Sbjct: 2 MET-KIFKKDQINDAVKLLAKGELVAFPTETVYGLGAIATKEKSVKGVYAAKGRPSDNPL 60 Query: 61 ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I VSD M+ K+A V + L K FWPGPLTL+L + T + T L T FR Sbjct: 61 IVTVSDEEMMAKYAKEVPERAKKLIKHFWPGPLTLLLFVKPGT-LPDAVTGGLDTVAFRC 119 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T LI G+P+ PSAN S + S T +H+ + +I IID G +++GLES Sbjct: 120 PDDQLTHDLIAKLGYPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDDGPTRVGLES 178 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQ 235 TI+++ E + +LRPG + E L + ++ V + P++PGM HYAP Sbjct: 179 TIIDLSVETPI-VLRPGEITPEELSEVLGEKVLINTGKVSDKDIPKAPGMKYRHYAPSEP 237 Query: 236 VRLRAIHVNPREALIRFG-NVPIKNIENAIISLNLSKT------GKLKEAAFNLFNYMKI 288 V + A I F + + + +NL + L +A NLF ++ Sbjct: 238 V--VVVDDPADFAKIDFNEKTGVAALAPVLAKINLPQANKFDLGNNLVDADHNLFGGLRY 295 Query: 289 ADDS-GASSIAFSSIPNHGLGIAINNRLERAAAP 321 DD +I +A NRL +AA Sbjct: 296 FDDQDDIETIYVQGFHEGEESLAYMNRLNKAAGG 329 >gi|256853868|ref|ZP_05559233.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis T8] gi|307290431|ref|ZP_07570346.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0411] gi|256710811|gb|EEU25854.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis T8] gi|306498624|gb|EFM68126.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0411] gi|315030389|gb|EFT42321.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX4000] Length = 340 Score = 323 bits (830), Expect = 2e-86, Method: Composition-based stats. Identities = 106/317 (33%), Positives = 175/317 (55%), Gaps = 23/317 (7%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLS 80 G +A PTETVYGL + N A++++Y++K RP+ NPLI HV+++ MVKK+ A++ ++ Sbjct: 21 GELVAFPTETVYGLGAAALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVA 80 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPLAIPS 139 L FWPGPLTL+ + + + T L+T FR+P LIE PL PS Sbjct: 81 TKLVSAFWPGPLTLIFN-VPSDTFSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPS 139 Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC-EKKVRILRPGGLE 198 AN SG+ S T+ +H+ + +I I+D G ++IG+EST++++ + ILRPG + Sbjct: 140 ANTSGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAIT 198 Query: 199 IETLKRAIS-VELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVP 256 E L+ I V+++ + + ET+ P++PGM HY+P ++V + + +A I+ Sbjct: 199 KEQLESIIPQVKIDTHLISETAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQAKEQ 258 Query: 257 IKNI--------------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302 + I ENA + ++T ++ A LF ++ D+ GA++I Sbjct: 259 QEKIGLFLSDEQAAQLDTENAFVYSYGAET--VENATKELFAGLRALDEQGATTIFAQGF 316 Query: 303 PNHGLGIAINNRLERAA 319 GLG A NRL+++A Sbjct: 317 AETGLGTAYMNRLKKSA 333 >gi|256842836|ref|ZP_05548324.1| Sua5 family translation factor [Lactobacillus crispatus 125-2-CHN] gi|256848800|ref|ZP_05554234.1| Sua5 family translation factor [Lactobacillus crispatus MV-1A-US] gi|295692625|ref|YP_003601235.1| sua5/ycio/yrdc/ywlc family protein [Lactobacillus crispatus ST1] gi|312977644|ref|ZP_07789391.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus crispatus CTV-05] gi|256614256|gb|EEU19457.1| Sua5 family translation factor [Lactobacillus crispatus 125-2-CHN] gi|256714339|gb|EEU29326.1| Sua5 family translation factor [Lactobacillus crispatus MV-1A-US] gi|295030731|emb|CBL50210.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus crispatus ST1] gi|310895383|gb|EFQ44450.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus crispatus CTV-05] Length = 333 Score = 323 bits (830), Expect = 2e-86, Method: Composition-based stats. Identities = 107/334 (32%), Positives = 158/334 (47%), Gaps = 19/334 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ I + + A + L G +A PTETVYGL + +++ +Y K RP+ NPL Sbjct: 1 MET-KIFKKDQINDAVKLLAKGELVAFPTETVYGLGAIATKEKSVKGVYAAKGRPSDNPL 59 Query: 61 ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I VSD M+ K+A V + L K FWPGPLTL+L + T + T L T FR Sbjct: 60 IVTVSDEEMMAKYAKEVPERAKKLIKHFWPGPLTLLLFVKPGT-LPDAVTGGLDTVAFRC 118 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T LI G+P+ PSAN S + S T +H+ + +I IID G +++GLES Sbjct: 119 PDDQLTHDLIAKLGYPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDDGPTRVGLES 177 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQ 235 TI+++ E + +LRPG + E L + ++ V + P++PGM HYAP Sbjct: 178 TIIDLSVETPI-VLRPGEITPEELSEVLGEKVLINTGKVSDKDIPKAPGMKYRHYAPSEP 236 Query: 236 VRLRAIHVNPREALIRFG-NVPIKNIENAIISLNLSKT------GKLKEAAFNLFNYMKI 288 V + A I F + + + +NL + L +A NLF ++ Sbjct: 237 V--VVVDDPADFAKIDFNEKTGVAALAPVLAKINLPQANKFDLGNNLVDADHNLFGGLRY 294 Query: 289 ADDS-GASSIAFSSIPNHGLGIAINNRLERAAAP 321 DD +I +A NRL +AA Sbjct: 295 FDDQDDIETIYVQGFHEGEESLAYMNRLNKAAGG 328 >gi|222529067|ref|YP_002572949.1| Sua5/YciO/YrdC/YwlC family protein [Caldicellulosiruptor bescii DSM 6725] gi|222455914|gb|ACM60176.1| Sua5/YciO/YrdC/YwlC family protein [Caldicellulosiruptor bescii DSM 6725] Length = 348 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 114/336 (33%), Positives = 161/336 (47%), Gaps = 25/336 (7%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 D L KA L G +A PTETVYGL ++ A+ +++ K RP NPLI H+S Sbjct: 11 IDYKKLEKAALILREGGLVAFPTETVYGLGANALLKDAVDKIFLAKGRPQDNPLIVHISS 70 Query: 67 ISMVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 M++ A + D L ++FWPGPLT+VL I TA L T R+P Sbjct: 71 KDMLEMCAEITDDRVYMLIEMFWPGPLTIVLP--KKNVIAENVTAGLSTVGVRMPANKIA 128 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 +LI G P+A PSAN SG+ S T KH++ + ++ +IIDGG GLEST+V++ Sbjct: 129 LELIRLSGVPVAAPSANVSGKPSPTEAKHVI-EDLMGKVDVIIDGGKCSFGLESTVVDLS 187 Query: 185 CEKKVRILRPGGLEIETLKRAIS-VELEYCVDE---TSTPQSPGMLKSHYAPRSQVRLRA 240 EK V ILRPG + LK +S +E V E + P+SPGM HYAP +++ + Sbjct: 188 GEKAV-ILRPGAISYFALKEVLSDIEYSKAVVEGLTGTVPRSPGMKYKHYAPDAKLIIVK 246 Query: 241 IHVNPR------------EALIRFGNVPIKNIENAIIS---LNLSKTGKLKEAAFNLFNY 285 ++ R R G + + S L L KE NLF+ Sbjct: 247 GRIDKRIDKMNDMKKEFEYKGYRVGILCFYETAHNFESQYKLILGSMFDAKECGRNLFSI 306 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 ++ + G I +A+ NRL +AAA Sbjct: 307 LRKFNQLGVDYILCEWGKFDLEFLALENRLYKAAAN 342 >gi|91772214|ref|YP_564906.1| translation factor SUA5 [Methanococcoides burtonii DSM 6242] gi|91711229|gb|ABE51156.1| SUA5-type translation factor [Methanococcoides burtonii DSM 6242] Length = 350 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 107/333 (32%), Positives = 173/333 (51%), Gaps = 26/333 (7%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 L +A + + G +A PTETVYGL ++ +P A++++++ K RPA NPLI HV+ Sbjct: 16 EEELTRAADIIKEGGIVAFPTETVYGLGANALDPDAVKKIFKAKGRPADNPLIVHVASKD 75 Query: 69 MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 A + + L FWPGPLTL+L + + ++T L T R+P + Sbjct: 76 QCNDLAKNISQTAFKLMDEFWPGPLTLIL--KAKKVVPEITTGGLDTVGLRMPANEIALE 133 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 I G PLA PSAN SG+ S T+ +H+ + + +I IIDGG+ +IGLEST+V++ + Sbjct: 134 FIRRSGTPLAAPSANTSGRPSPTSAEHV-TQDLEGKIDAIIDGGMVEIGLESTVVDITGD 192 Query: 187 KKVRILRPGGLEIETLKRAIS-VELEY---CVDETSTPQSPGMLKSHYAPRSQVRLRA-- 240 ILRPG + E ++ VE+ Y ++ T +SPGM +HY+P ++V L Sbjct: 193 IPA-ILRPGKVSAEDIRECAGNVEIGYTDKTLEGNETARSPGMKYTHYSPETKVILIEGS 251 Query: 241 ----------IHVNPREALIRFGNVPIKNIENAI---ISLNLSKTGKLKEAAFNLFNYMK 287 + N + R G + + I ++I ++ +L K + +AA ++F ++ Sbjct: 252 SASVENTMVNLITNCHKKGKRVGLLATEEILDSINSDVTYSLGKKDEPNQAARSIFMGLR 311 Query: 288 IADDSGASSIAFSS-IPNHGLGIAINNRLERAA 319 D+ I + G+G AI NRL +AA Sbjct: 312 HLDNKEIDIILVDGTLKTDGIGAAIFNRLRKAA 344 >gi|197104025|ref|YP_002129402.1| Sua5/YciO/YrdC family protein [Phenylobacterium zucineum HLK1] gi|196477445|gb|ACG76973.1| Sua5/YciO/YrdC family protein [Phenylobacterium zucineum HLK1] Length = 307 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 134/318 (42%), Positives = 176/318 (55%), Gaps = 15/318 (4%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 M TD + A + L AG + +PTETVYGLA D+ NP A+ +YE K RP+ NPLI H Sbjct: 1 MDPTDPHT---AAQALKAGGLVLMPTETVYGLAADAANPRAVAAVYEAKGRPSFNPLISH 57 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 V+D+ M ++ A DP + L FWPGPLTLVL T + L+ A L T R P Sbjct: 58 VADVGMARRIARFDPRAEALTARFWPGPLTLVLPAADTAAVCDLARAGLDTVAVRAPAHP 117 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 + L++ +G P+ PSANRSG+ S T L + +DGG ++GLEST+V Sbjct: 118 LARALLQAFGGPVVAPSANRSGRPSPTTFAAALEET-GYAAAAALDGGPCEVGLESTVVA 176 Query: 183 VQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242 + E R+LRPG + ++ I E +SPG L HYAP VRL A Sbjct: 177 LLDE--ARLLRPGAVTRAEIEAVIG---PLAEAEADARRSPGRLARHYAPDLPVRLDAAA 231 Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302 EA + FG P + NLS +G LKEAA NLF ++ AD SGAS+IA + I Sbjct: 232 PAAGEAFLAFGPAP-----ETARTFNLSPSGDLKEAAANLFAMLRAADRSGASAIAVAPI 286 Query: 303 PNHGLGIAINNRLERAAA 320 P+ GLG AIN+RL+RAA Sbjct: 287 PHEGLGEAINDRLKRAAG 304 >gi|325109331|ref|YP_004270399.1| translation factor SUA5 [Planctomyces brasiliensis DSM 5305] gi|324969599|gb|ADY60377.1| translation factor SUA5 [Planctomyces brasiliensis DSM 5305] Length = 326 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 110/319 (34%), Positives = 176/319 (55%), Gaps = 14/319 (4%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 + +A L AG +AIPTETVYGLA D+ NP A+ ++ K+RP +PLI H+ + + + Sbjct: 11 DIEQASRILHAGGLVAIPTETVYGLAADALNPEAVAGIFAAKQRPEFDPLIVHIYERAQL 70 Query: 71 KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLI 128 + + PL+ L FWPGPLT +L+ ++ + L T+ L T R+P ++L+ Sbjct: 71 SQLCREISPLAAELMNAFWPGPLTFILEKSAS--VPDLVTSGLSTVGVRMPEHETARELL 128 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 PLA PSAN G+ S T H++ + I ++DGG ++G+ESTIV E Sbjct: 129 RVSRLPLAAPSANLFGRTSPTTAAHVMK-QLDGRIDYLLDGGECRVGVESTIVRCH-EGV 186 Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL----RAIHVN 244 +++LRPGG +E L++ V +E +++ +P +PG L HYAPR+++++ + + V Sbjct: 187 IQLLRPGGTPVEALEKFAPV-VETRLEDNESPAAPGQLLEHYAPRTKLQIIDPQQPLDVP 245 Query: 245 PREALIRFGNVPIKN---IENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSS 301 AL+ + + + LS++G L AA F + DD G + I + Sbjct: 246 AGSALLTLQKAGFPDDFPFDQFEVVETLSESGDLTVAAARFFAALHALDDRGLNRIFATP 305 Query: 302 IPNHGLGIAINNRLERAAA 320 PN LG+A+N+RL RAAA Sbjct: 306 FPNRELGLALNDRLRRAAA 324 >gi|227877273|ref|ZP_03995346.1| Sua5 family translation factor [Lactobacillus crispatus JV-V01] gi|227863129|gb|EEJ70575.1| Sua5 family translation factor [Lactobacillus crispatus JV-V01] Length = 339 Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats. Identities = 107/334 (32%), Positives = 157/334 (47%), Gaps = 18/334 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I + + A + L G +A PTETVYGL + +++ +Y K RP+ NPL Sbjct: 6 MMETKIFKKDQINDAVKLLAKGELVAFPTETVYGLGAIATKEKSVKGVYAAKGRPSDNPL 65 Query: 61 ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I VSD M+ K+A V + L K FWPGPLTL+L + T + T L T FR Sbjct: 66 IVTVSDEEMMAKYAKEVPERAKKLIKHFWPGPLTLLLFVKPGT-LPDAVTGGLDTVAFRC 124 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T LI G+P+ PSAN S + S T +H+ + +I IID G +++GLES Sbjct: 125 PDDQLTHDLIAKLGYPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDDGPTRVGLES 183 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQ 235 TI+++ E + +LRPG + E L + ++ V + P++PGM HYAP Sbjct: 184 TIIDLSVETPI-VLRPGEITPEELSEVLGEKVLINTGKVSDKDIPKAPGMKYRHYAPSEP 242 Query: 236 VRLRAIHVNPREALIRFG-NVPIKNIENAIISLNLSKT------GKLKEAAFNLFNYMKI 288 V + A I F + + + +NL + L +A NLF ++ Sbjct: 243 V--VVVDDPADFAKIDFNEKTGVAALAPVLAKINLPQANKFDLGNNLVDADHNLFGGLRY 300 Query: 289 ADDS-GASSIAFSSIPNHGLGIAINNRLERAAAP 321 DD +I +A NRL +AA Sbjct: 301 FDDQDDIETIYVQGFHEGEESLAYMNRLNKAAGG 334 >gi|225573947|ref|ZP_03782592.1| hypothetical protein RUMHYD_02041 [Blautia hydrogenotrophica DSM 10507] gi|225038806|gb|EEG49052.1| hypothetical protein RUMHYD_02041 [Blautia hydrogenotrophica DSM 10507] Length = 356 Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats. Identities = 98/336 (29%), Positives = 163/336 (48%), Gaps = 25/336 (7%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 + + + +A + L G +A PTETVYGL ++ + A ++Y K RP+ NPLI H++ + Sbjct: 14 EQDIISQAGKILREGGLVAFPTETVYGLGGNALDAAASEKIYAAKGRPSDNPLIVHIARM 73 Query: 68 SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 ++K + V + LA+ WPGPLT++L + ++ +T L + R P + Sbjct: 74 EDLEKIVTGVPKKAKILAEACWPGPLTMILP--KSEEVPYETTGGLDSVAVRYPSHPVAQ 131 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LI G +A PSAN SG+ S T H+ + + +I+DGG IG+ESTIV+ Sbjct: 132 ALILAAGGFVAAPSANTSGRPSPTTAAHV-QEDLTGAVDMILDGGQVGIGIESTIVDFT- 189 Query: 186 EKKVRILRPGGLEIETLKRAIS-VELEYCV---DETSTPQSPGMLKSHYAPRSQVRLRAI 241 EK +LRPG + +E LK + V+++ + D + P++PGM HYAP++++ + Sbjct: 190 EKIPTVLRPGYISLEKLKELLGEVKMDKGLLRADASQRPKAPGMKYRHYAPKAELTIVEG 249 Query: 242 HVNPREALIR---------------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYM 286 A I G ++ + + K + A +L+ + Sbjct: 250 STEYVVAYINQKAKEASKRGRQIGIIGTEETFPYYSSGVVRCIGSRKKEEGIALHLYEVL 309 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 + D +I S +G AI NRL +AA R Sbjct: 310 RDFDQCEVEAIYSESFDTPKMGQAIMNRLLKAAGHR 345 >gi|86139042|ref|ZP_01057613.1| Sua5/YciO/YrdC family protein [Roseobacter sp. MED193] gi|85824273|gb|EAQ44477.1| Sua5/YciO/YrdC family protein [Roseobacter sp. MED193] Length = 329 Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats. Identities = 128/316 (40%), Positives = 173/316 (54%), Gaps = 9/316 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++ L +A + L G ++ PTETVYGL D+R A+ +Y K RP+ NPLI HVS + Sbjct: 17 ASDLTRAAQLLRQGKLVSFPTETVYGLGGDARRGDAVAAIYTAKGRPSFNPLIAHVSSVE 76 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127 K++ + + LA+ FWPGPLTLVL L I L TA L T RVP +KL Sbjct: 77 AAKRYVIWNAWAETLAQAFWPGPLTLVLPLAPDHGISELVTAGLDTLALRVPAHPTAQKL 136 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + P+A PSAN SG+IS T H++ + + I ++ G +GLESTIV + + Sbjct: 137 LAELDVPVAAPSANSSGRISPTTADHVM-AGLAGRIAAVVADGACSVGLESTIVGLAGDA 195 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 + +LRPGGL E ++ + L D +PG L SHYAP+ +VRL A E Sbjct: 196 PM-LLRPGGLAAEQIEAVLGQPLA-SRDIHDPLTAPGQLLSHYAPQERVRLDATSPRAGE 253 Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307 + FG L+LS TG L +AA NLF ++ D G IA + IP GL Sbjct: 254 CYLGFGPYSGAR----ACDLSLSDTGDLAQAAANLFGHLHRLDAQGLP-IAVAPIPETGL 308 Query: 308 GIAINNRLERAAAPRN 323 GIAIN+RL RAAAPR+ Sbjct: 309 GIAINDRLRRAAAPRD 324 >gi|254381244|ref|ZP_04996609.1| Sua5/YciO/YrdC/YwlC protein [Streptomyces sp. Mg1] gi|194340154|gb|EDX21120.1| Sua5/YciO/YrdC/YwlC protein [Streptomyces sp. Mg1] Length = 335 Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats. Identities = 113/324 (34%), Positives = 169/324 (52%), Gaps = 16/324 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++ + +A E L AG +A+PTETVYGL ++ +P A+ R++++K RP +PLI H++ Sbjct: 15 TSDIERAAEVLRAGGLVALPTETVYGLGANAEDPAAVARIFQVKGRPPSHPLIVHIAAAE 74 Query: 69 MVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + P + LA+ FWPGPLTLVL + +T L+T RVP Sbjct: 75 HLDDWVETVPETARLLAEHFWPGPLTLVLRRGP--RVPLEATGGLETVAVRVPDHPVALA 132 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+ +G + PSANR G +S T H+ + + + L++DGG ++G+ESTIV+V E Sbjct: 133 LLSAFGGGVTAPSANRFGSVSPTTADHV-RTELGGAVDLVLDGGSCEVGVESTIVDVTGE 191 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246 ILRPGG+ E L+ +S + V TS + PG SHYAPR++V L Sbjct: 192 VP-SILRPGGVTREDLEAVLSRSM--AVPSTSHVRVPGQHPSHYAPRARVVLVEPEKVIA 248 Query: 247 EALI------RFGNVPIKNIENAIIS--LNLSKTGKLKEAAFNLFNYMKIADDSGASSIA 298 EA + R G + + ++ G + A+ L+ +++ D G I Sbjct: 249 EAELAQGLGHRVGVFVPAAFADTPVKTHAVVTVPGSMDAYAYGLYGFLRELDQQGCDLIV 308 Query: 299 FSSIPNHGLGIAINNRLERAAAPR 322 S P GLG+AI NRL RAA PR Sbjct: 309 ASLPPEEGLGLAIANRLRRAAGPR 332 >gi|119720716|ref|YP_921211.1| Sua5/YciO/YrdC/YwlC family protein [Thermofilum pendens Hrk 5] gi|119525836|gb|ABL79208.1| translation factor SUA5 [Thermofilum pendens Hrk 5] Length = 366 Score = 322 bits (827), Expect = 3e-86, Method: Composition-based stats. Identities = 100/342 (29%), Positives = 163/342 (47%), Gaps = 31/342 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D+ ++ +A L G +A PTETVYGL A+ R++++K+RP NPLI H+S Sbjct: 26 DAKSIEEAASILRKGGVVAFPTETVYGLGAVYHMRDAVIRVFKVKRRPPDNPLILHISSF 85 Query: 68 SMVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 S + AS P ++ LA+ FWPGPLT+VL T+ + T L+ R+P Sbjct: 86 SQIYTLASEVPEAVHRLAEKFWPGPLTVVLP--KTSRVPYEVTGGLEKVAVRMPAHNVAL 143 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +LIE G P+A PSAN SG+ S T +H+L + + EI ++D G + G+EST++++ Sbjct: 144 RLIEAVGDPIAAPSANLSGRPSPTTAQHVL-ADLGDEIDGVLDAGETLYGVESTVIDLTA 202 Query: 186 EKKVRILRPGGLEIETLKRAIS----VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241 + V +LRPG + +E +++ + + E +PG HY+PR+Q+ L + Sbjct: 203 DPPV-LLRPGAVPLEEVEKVLGKVCVPAFARGLGEAERALAPGTRYRHYSPRAQLVLVEL 261 Query: 242 HVNPREA----------------LIRFGNVPIKNIEN-----AIISLNLSKTGKLKEAAF 280 + +R G + + L+L A Sbjct: 262 KDYSDLSKLVDRVKRLVAENAGRGLRVGVLCTDETREHYSGLGAVVLSLGSRRDPFGIAR 321 Query: 281 NLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 L++ + D G I + GLG+ I NR+ +A+ R Sbjct: 322 RLYSSFREMDSLGVDVIVAEGVDERGLGLTIMNRMRKASTKR 363 >gi|295697767|ref|YP_003591005.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus tusciae DSM 2912] gi|295413369|gb|ADG07861.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus tusciae DSM 2912] Length = 359 Score = 322 bits (827), Expect = 4e-86, Method: Composition-based stats. Identities = 106/336 (31%), Positives = 161/336 (47%), Gaps = 25/336 (7%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 + A+ +A +FL G +A PTETVYGL ++ +P A+ ++Y K RP NPLI H+++ Sbjct: 20 NDPAILEAADFLRRGEAVAFPTETVYGLGANALDPAAVDKIYFAKGRPGDNPLIVHIAER 79 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 V A + P + L + FWPGPLT++L + + +T L T R+P Sbjct: 80 RQVDDLAEEIFPAAARLMEAFWPGPLTVILP--AADRVPRRTTGGLDTVAIRMPAHPVAA 137 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 ++ G P+A PSANRSG+ S T K + + IPL++DGG + IG+ESTI+ Sbjct: 138 AILRVAGIPVAAPSANRSGRPSPTTAKDVW-EDLAGRIPLLVDGGPAGIGVESTIIGWPQ 196 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVD---ETSTPQSPGMLKSHYAPRSQVRLRAIH 242 + V ILRPGG+ E L+ + +E P +PGM HYAP+ Q+ L Sbjct: 197 GRPV-ILRPGGISPEELQDVLGEPVELDDSWKASVDRPLAPGMKYRHYAPKGQLYLLRGD 255 Query: 243 VNPREALI------------RFGNVPIKNIENAI----ISLNLSKTGKLKEAAFNLFNYM 286 ++ A I R G + + + L A L++ + Sbjct: 256 LDAARAEIVRRATADHAAGRRVGVLTTAEGQGVYPAFCAVVACGTRRDLATVAAGLYSAL 315 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 + D G + P G+G A+ NRL +AA R Sbjct: 316 RSFDHLGCEVMYAEPFPPEGIGWAVLNRLIKAAGHR 351 >gi|320529371|ref|ZP_08030459.1| Sua5/YciO/YrdC/YwlC family protein [Selenomonas artemidis F0399] gi|320138337|gb|EFW30231.1| Sua5/YciO/YrdC/YwlC family protein [Selenomonas artemidis F0399] Length = 355 Score = 322 bits (827), Expect = 4e-86, Method: Composition-based stats. Identities = 104/346 (30%), Positives = 162/346 (46%), Gaps = 30/346 (8%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 QI+S + A + + G +A PTETVYGL + + A R+Y K RP+ NPLI Sbjct: 4 QIISPVRDADIAHAAQMIRDGALVAFPTETVYGLGANGLDVAACARIYAAKGRPSDNPLI 63 Query: 62 CHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 H++D+SM A V P + HL F PGP+T++L + + + T L T R P Sbjct: 64 LHIADLSMAADAARIVTPAAAHLLTAFAPGPITVILPKAAH--VPDIVTGGLSTVGVRCP 121 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + LI G P+A PSAN SG+ S T + S + IP I+DGG + G+EST Sbjct: 122 DHDIARALIRAAGVPIAAPSANTSGRPSPTTAAMV-SDDLAGRIPCILDGGACRWGVEST 180 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-----ETSTPQSPGMLKSHYAPRS 234 IV+ + V +LRPG + E + + ++E VD + P++PGM HYAPR+ Sbjct: 181 IVDCTEDGIVTVLRPGAVTREMIAAEL-PQMEVRVDPALTAADAVPRAPGMKYRHYAPRA 239 Query: 235 QVRLRAIHVNPREALIRF-------------------GNVPIKNIENAIISLNLSKTGKL 275 + + + A +R + + + G Sbjct: 240 SLTVYTGAPDTVTAALRAEILRRRAEGTQVGLIASRETCAALTGLISPAYVYACGARGDD 299 Query: 276 KEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 A L++ ++ D++ A ++ HGLG+A+ NRL +A+ Sbjct: 300 AAYANCLYDALRRFDNTDAGALLAEGTDEHGLGLAVMNRLRKASGG 345 >gi|15897573|ref|NP_342178.1| hypothetical protein SSO0664 [Sulfolobus solfataricus P2] gi|284174894|ref|ZP_06388863.1| hypothetical protein Ssol98_09601 [Sulfolobus solfataricus 98/2] gi|6015811|emb|CAB57638.1| hypothetical protein [Sulfolobus solfataricus P2] gi|13813830|gb|AAK40968.1| SUA5 related conserved hypothetical protein [Sulfolobus solfataricus P2] gi|261602336|gb|ACX91939.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus solfataricus 98/2] Length = 358 Score = 322 bits (827), Expect = 4e-86, Method: Composition-based stats. Identities = 103/329 (31%), Positives = 161/329 (48%), Gaps = 22/329 (6%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + ++KA + AG + PTETVYGL ++ +P A+++++ K RP NPLI H+S+I Sbjct: 15 DKIKKAANVIKAGGTVVFPTETVYGLGANALDPEAVKKIFIAKNRPMDNPLIVHISNIDQ 74 Query: 70 VKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + A P ++L + WPGPLT VL T + +T L+T R+P L Sbjct: 75 LYEVAKDIPKKIINLVNIVWPGPLTFVL--KKTEKVPKETTGGLETVAVRMPAHPVALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I G P+A PSAN + + S T V+H++ I ++ +I+D G + G+EST++NV + Sbjct: 133 INESGVPIAAPSANLATKPSPTRVEHVI-DDIYGKVDVILDSGETFFGVESTVINVTVDP 191 Query: 188 KVRILRPGGLEIETLKR----AISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA--- 240 V +LRPG +E L+R + E E +PGM HYAP ++ + Sbjct: 192 PV-LLRPGPFSVEELERLFGKVVVPEQAKGTAEFDVALAPGMKYKHYAPTKRLLVVENRS 250 Query: 241 ---------IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291 + R AL+ V + I + L L E + NLF+ + D Sbjct: 251 VLRGVINELQKRSCRIALLCASEVCKQFRGEKIEIIELGSENNLYEISRNLFDSFRKLDK 310 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320 S SI G+G+AI NR +A+ Sbjct: 311 SNVDIGVIHSISEKGIGLAIMNRTRKASG 339 >gi|330834140|ref|YP_004408868.1| translation factor SUA5 [Metallosphaera cuprina Ar-4] gi|329566279|gb|AEB94384.1| translation factor SUA5 [Metallosphaera cuprina Ar-4] Length = 350 Score = 322 bits (827), Expect = 4e-86, Method: Composition-based stats. Identities = 105/332 (31%), Positives = 162/332 (48%), Gaps = 24/332 (7%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 +++ +RKA E + +G +A PTETVYGL ++ + A ++++ K+RP NPLI H++D+ Sbjct: 12 ETDLIRKAAEVIRSGGLVAFPTETVYGLGANAFDGKAAEKVFKAKRRPMDNPLIVHIADV 71 Query: 68 SMVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 +++ AS P + LA+ WPGPLT VL T+ + +T L T R+P Sbjct: 72 GQLEEVASDLSPEVMDLAQKVWPGPLTFVL--KKTSKVPLETTGGLNTVAVRMPAHPIAL 129 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LI G P+A PSAN + + S T +H++ + + ++IDGG S G+ESTI+N+ Sbjct: 130 SLIRESGVPIAAPSANLATKPSPTLAEHVI-QDLDGSVDIVIDGGESFFGVESTIINLTV 188 Query: 186 EKKVRILRPGGLEIETLKRAIS----VELEYCVDETSTPQSPGMLKSHYAPRSQVRL--- 238 + V +LRPG +E L + E E +PGM HYAP + L Sbjct: 189 KPPV-LLRPGPFTVEELTTLVGEINVPEELTRGKEFGVALAPGMKYKHYAPDKTLYLVER 247 Query: 239 --------RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD 290 + R A++ K E II L + L A NLF + D Sbjct: 248 KSIFLDVVNILREKKRVAVLCSEETCSKLEEPRII---LGNSENLYSIAKNLFKSFRQLD 304 Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 P G+G+AI NR+++A A + Sbjct: 305 GLDVDLGVIEPFPEKGIGLAIMNRVKKATAHK 336 >gi|304438487|ref|ZP_07398427.1| Sua5/YciO/YrdC/YwlC family protein [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368570|gb|EFM22255.1| Sua5/YciO/YrdC/YwlC family protein [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 350 Score = 322 bits (827), Expect = 4e-86, Method: Composition-based stats. Identities = 110/345 (31%), Positives = 170/345 (49%), Gaps = 28/345 (8%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +I+ T + +A + G +A PTETVYGL + + A R+YE K RP+ NPLI Sbjct: 4 EILRPTSTEHFARAAALIRDGQLVAFPTETVYGLGANGLDAAACARIYEAKGRPSDNPLI 63 Query: 62 CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 H++D+SM+ + A V P + HL F PGP+T+++ + I PL T L T R P Sbjct: 64 LHIADLSMLHEAAEDVPPAAAHLLTAFAPGPITVIVPKAAH--IPPLVTGGLATVGVRCP 121 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 ++LI G P+A PSAN SG+ S T + ++ + IPLI+DGG G+EST Sbjct: 122 AHDVARRLIRAAGMPIAAPSANISGRPSPTTAA-MTAADMMGRIPLILDGGSCSWGVEST 180 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRA---ISVELEYC-VDETSTPQSPGMLKSHYAPRSQ 235 IV+ E + ILRPG + E + ++V ++ V + P++PGM +HYAPR Sbjct: 181 IVDCTEEGCITILRPGAVTPEMISAELPHLTVRMDAALVSADTAPRAPGMKYTHYAPRVP 240 Query: 236 VRLRAIHVNPREALIRF-------------------GNVPIKNIENAIISLNLSKTGKLK 276 + + A +R + + + A + N G Sbjct: 241 LTVFAGAGTDVVRALRIEIERRMAAGERPALIASNDTIMALSGLLPAAYTYNCGARGNQS 300 Query: 277 EAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 A L++ ++ DD+ +S+ + GLGIAI NRL +A+ Sbjct: 301 TLAACLYDALRHFDDTDVTSLLAEGAGSVGLGIAIMNRLRKASGG 345 >gi|229829441|ref|ZP_04455510.1| hypothetical protein GCWU000342_01531 [Shuttleworthia satelles DSM 14600] gi|229791872|gb|EEP27986.1| hypothetical protein GCWU000342_01531 [Shuttleworthia satelles DSM 14600] Length = 504 Score = 322 bits (826), Expect = 5e-86, Method: Composition-based stats. Identities = 108/336 (32%), Positives = 167/336 (49%), Gaps = 27/336 (8%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 LR+ E L G +A PTETVYGL D+ N + R++Y K RP+ NPLI H++D S Sbjct: 7 KEILREPGEILREGGLVAFPTETVYGLGGDAENAESSRKIYAAKGRPSDNPLIVHIADFS 66 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 ++ A + P LA FWPGPLT+++ I +T L T R+P ++ Sbjct: 67 QMEAIAQELAPQVRILADAFWPGPLTMIV--RKNDRIPLETTGGLDTVAVRMPSHPVARQ 124 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LI + G +A PSAN SG+ S T +H+ + + +I IIDGG +IGLESTIV++ E Sbjct: 125 LILSSGCMIAAPSANSSGRPSPTRAEHV-ADDLSGKIDAIIDGGPVEIGLESTIVDL-SE 182 Query: 187 KKVRILRPGGLEIETLKRAIS---VELEYCVDE---TSTPQSPGMLKSHYAPRSQVRLRA 240 +LRPG + + L+ + V ++ + E ++ P++PGM HYAPR +++ Sbjct: 183 GIPTVLRPGYINLRMLEEVLGQDHVRMDPGLMEENVSARPKAPGMRYKHYAPRGDLKIVE 242 Query: 241 IHVNPREALI------------RFGNVPIKNIENAIIS---LNLSKTGKLKEAAFNLFNY 285 + I + G + + + + + +E A +LF Sbjct: 243 GAADDVVETINRLSAEAIATGSKVGVIASAETRSRYLYGDIVEIGPRSDEEEIARHLFGV 302 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 ++ DD G I + +G AI NRL +AAA Sbjct: 303 LRHFDDQGIEIIYSEAFDTPQMGTAIMNRLIKAAAH 338 >gi|114798799|ref|YP_760549.1| Sua5/YciO/YrdC/YwlC family protein [Hyphomonas neptunium ATCC 15444] gi|114738973|gb|ABI77098.1| Sua5/YciO/YrdC/YwlC family protein [Hyphomonas neptunium ATCC 15444] Length = 313 Score = 322 bits (826), Expect = 5e-86, Method: Composition-based stats. Identities = 130/312 (41%), Positives = 170/312 (54%), Gaps = 13/312 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + A E L G +A+PTETVYGLA D+ NP A+ RLY+ K RP NPLI HVS Sbjct: 10 PETVALAVEILSGGGLVAMPTETVYGLAADAANPDAVVRLYQAKGRPRFNPLIAHVSGTE 69 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-KL 127 M + A PL+ LA+ FWPGPLTLVL + + L+ + L+T R P L Sbjct: 70 MASREAVFSPLAERLAEKFWPGPLTLVLPVNPNGTVCDLARSGLQTVGLRCPSHPAANAL 129 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I +G P+ PSANRSG +S T +H+ ++ + I LI+DGG +G+ESTI+ V+ E Sbjct: 130 ITEFGRPVVAPSANRSGHVSPTRAEHV-AADLSDRIDLILDGGPCDVGIESTILAVEGE- 187 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 +LR G + + L+ I LE +PGMLKSHYAP +Q+RL A E Sbjct: 188 TATLLRSGAIPSDVLETFIGKSLERA--SGLAISAPGMLKSHYAPNAQLRLDAAAPEAGE 245 Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307 + FG + LNLS G L EAA LF ++ D IA + IP GL Sbjct: 246 GYLGFGPGVREG-------LNLSPEGDLAEAATKLFAMLRALDAR-FDRIAIAPIPWEGL 297 Query: 308 GIAINNRLERAA 319 G AIN+RL RAA Sbjct: 298 GEAINDRLARAA 309 >gi|291548235|emb|CBL21343.1| Sua5/YciO/YrdC/YwlC family protein [Ruminococcus sp. SR1/5] Length = 364 Score = 322 bits (825), Expect = 6e-86, Method: Composition-based stats. Identities = 106/337 (31%), Positives = 165/337 (48%), Gaps = 25/337 (7%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 D A+ + E L G +A PTETVYGL ++ +P A ++Y K RP+ NPLI H++D Sbjct: 17 IDRKAIARGGEILKNGGLVAFPTETVYGLGGNALDPKASMKIYAAKGRPSDNPLIVHIAD 76 Query: 67 ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFT 124 I + K V + LA+ +WPGPLT++L + +T L + R P Sbjct: 77 IRDLDKIVTEVPEKARILAEKYWPGPLTMILPKADI--VPKETTGGLDSVAVRFPSDPIA 134 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 ++LI G +A PSAN SG+ S T H+ + + + I +IIDGG IGLESTIV+ Sbjct: 135 QELILAAGGYVAAPSANTSGRPSPTTAGHV-AEDLGEAIDMIIDGGQVNIGLESTIVDFT 193 Query: 185 CEKKVRILRPGGLEIETLKRAIS-VELEYCV---DETSTPQSPGMLKSHYAPRSQVRLRA 240 + V +LRPG + +E L+ + V ++ + D P++PGM HYAP++ + + Sbjct: 194 EDIPV-VLRPGYISLEMLRETLGDVRMDKGLIKPDSKVHPKAPGMKYRHYAPKADLAIVE 252 Query: 241 IHVNPREALI--RFGNVPIKNIENAI-------------ISLNLSKTGKLKEAAFNLFNY 285 A I R G K + I I ++ + + A +L+ Sbjct: 253 GSTEGVIAEIEKRAGEAEEKGLTVGIIATDETKGRYSHGIVKSIGSREQEETIAHHLYEV 312 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 ++ D S+I + +G AI NRL +AA + Sbjct: 313 LRDFDSCNVSAIYSEAFFTPRMGQAIMNRLLKAAGHK 349 >gi|332663181|ref|YP_004445969.1| Sua5/YciO/YrdC/YwlC family protein [Haliscomenobacter hydrossis DSM 1100] gi|332331995|gb|AEE49096.1| Sua5/YciO/YrdC/YwlC family protein [Haliscomenobacter hydrossis DSM 1100] Length = 317 Score = 322 bits (825), Expect = 6e-86, Method: Composition-based stats. Identities = 118/316 (37%), Positives = 170/316 (53%), Gaps = 11/316 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E L G IAIPTETVYGLA ++ + + + +++ IK+RP+ +PLI HV D+ ++ Sbjct: 6 IAQAAELLKRGEVIAIPTETVYGLAGNALDESTVAKIFAIKQRPSFDPLIVHVPDLQSLE 65 Query: 72 KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 P + LA+ F PG LTL+L+ T I L TA R+P ++L+ Sbjct: 66 NWVQNIPTAARQLAQHFMPGALTLLLEKKET--ISDLVTAGSPLVAMRIPAHPLAQELLR 123 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 PLA PSAN G IS T +H+ + + +IP I+DGG IGLESTIV E + Sbjct: 124 LLPFPLAAPSANPFGYISPTRAEHV-AHQLGDQIPYILDGGPCTIGLESTIVGF-PEGRA 181 Query: 190 RILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI-HVNPREA 248 I R GG+ +E ++ I ++ +S PQ+PGMLKSHYAPR + L + + P+ Sbjct: 182 TIFRKGGIPVEAIEAVIG-PVQVQAHSSSNPQAPGMLKSHYAPRIPLVLGKLTELIPQHQ 240 Query: 249 LIRFGNVPIKNIENAIIS---LNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305 G + + I S LS +G EAA NLF+ M+ D I +P Sbjct: 241 GKAIGVLSFQERYPEIPSERQFALSSSGDYTEAARNLFSAMRYLDQLPLDLIVAELLPEE 300 Query: 306 GLGIAINNRLERAAAP 321 LG AIN+RL RA++ Sbjct: 301 NLGRAINDRLRRASSK 316 >gi|309390218|gb|ADO78098.1| Sua5/YciO/YrdC/YwlC family protein [Halanaerobium praevalens DSM 2228] Length = 377 Score = 322 bits (825), Expect = 7e-86, Method: Composition-based stats. Identities = 109/341 (31%), Positives = 174/341 (51%), Gaps = 29/341 (8%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + KA E L +A+PTETVYGLA ++ +P A+ +++ K RP NPLI H++D + Sbjct: 37 DEVILKAAELLSQNQLVALPTETVYGLAANALSPKAVSKIFAAKGRPQDNPLIVHIADQA 96 Query: 69 MVKKH--ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 +K+ A + + L FWPGPLT++ + + L++A L+T R+P Sbjct: 97 QLKELTAAKITAKTQALMDHFWPGPLTIIFP--KSKKVPNLTSAGLETIAIRMPAHPLIL 154 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +IE+ G PLA PSAN SG S T +H+ + +IPLI+DGG ++G+EST+V+++ Sbjct: 155 AVIESSGLPLAAPSANTSGFPSPTQAEHVY-HDLKGKIPLILDGGPCQVGVESTVVDLRS 213 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244 + V++LRPGG+ + + + E+ D + T +PGM HYAP +L + Sbjct: 214 AQ-VKVLRPGGISRQEIADFLGEEVLLAADLKDDTAVAPGMKYRHYAPNK--KLYTFNFE 270 Query: 245 PREALIRFGNVPIKNIENAIISLNLSKTGK------------------LKEAAFNLFNYM 286 + +++ ++ + AIIS SK E A LF M Sbjct: 271 DKLFILKKALKKAESKKIAIISARNSKLDNYQLPTKNLKVLKVFSHQKPAELAQKLFALM 330 Query: 287 KIAD-DSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326 + D D I + G+G A+ NR+++AAA SQ Sbjct: 331 RSLDADPEVEEIYIEELAAQGIGEAVMNRIQKAAAAEEYSQ 371 >gi|150388176|ref|YP_001318225.1| Sua5/YciO/YrdC/YwlC family protein [Alkaliphilus metalliredigens QYMF] gi|149948038|gb|ABR46566.1| Sua5/YciO/YrdC/YwlC family protein [Alkaliphilus metalliredigens QYMF] Length = 356 Score = 321 bits (824), Expect = 8e-86, Method: Composition-based stats. Identities = 104/338 (30%), Positives = 160/338 (47%), Gaps = 29/338 (8%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 L E + G +A PTETVYGL ++ + AI +++ K RP+ NPLI HV+ Sbjct: 18 DEILTACGEMIREGKTVAFPTETVYGLGANALDSKAINKIFVAKGRPSDNPLIVHVAHRV 77 Query: 69 MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 V V P + L FWPGPLTLV++ + I +A L T R+P + Sbjct: 78 EVDALVRVIPEKAKKLMAHFWPGPLTLVME--KSHGIPGEISAGLSTVAIRMPVHPIART 135 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LIE G P+A PSAN SG+ S T H++ + ++ II GG +G+EST+++V E Sbjct: 136 LIEKAGVPVAAPSANTSGKPSPTRAAHVI-QDLRGKVDAIIAGGPCDVGVESTVLDVT-E 193 Query: 187 KKVRILRPGGLEIETLKRAIS-----VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241 + ILRPGG+ E L+ I L + + P+SPGM +HYAP+++V + Sbjct: 194 ETPMILRPGGVTKEMLEAVIGEVALDPGLYHRGEMKDVPRSPGMKYTHYAPKAKVIIIEG 253 Query: 242 HVNPREALIRFGNVPIKNIENAIISL------------------NLSKTGKLKEAAFNLF 283 IR K ++ + ++ + A NLF Sbjct: 254 VEAAVVRKIREMVAYYKEKGLSVGVIVTDESLAYYDQVEECCVKSMGSRQNPETIANNLF 313 Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 ++ D++ + I ++ G+G A+ NRL +AA Sbjct: 314 RVLREFDETNVAIILSEAVEEVGIGQAVMNRLMKAAGN 351 >gi|327310576|ref|YP_004337473.1| sua5 family protein [Thermoproteus uzoniensis 768-20] gi|326947055|gb|AEA12161.1| sua5 family protein [Thermoproteus uzoniensis 768-20] Length = 346 Score = 321 bits (824), Expect = 9e-86, Method: Composition-based stats. Identities = 105/325 (32%), Positives = 162/325 (49%), Gaps = 17/325 (5%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A + +G +A PTETVYGL D+ N A R+++ K RPA NPLI HVS + Sbjct: 14 DEDIAEAAAVIRSGGLVAFPTETVYGLGADAFNAEASARIFKAKGRPADNPLIVHVSSLD 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 M + + ++ +AK WPGP+T V+ D+ + TA T R P KL Sbjct: 74 MALELGDMPEKAVEVAKKAWPGPITFVV--KKKADLPAVVTAGRPTVALRCPAHPVALKL 131 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 IE G P+A PSAN++G+ S T H+ + + + LI+D G + G+ESTIV+V E Sbjct: 132 IEAAGTPIAAPSANKAGRPSPTEASHV-AEDLGDSVDLILDAGRTFFGVESTIVDVTREP 190 Query: 188 KVRILRPGGLEIETLKRAIS----VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 V +LRPG +E LK + + E +PGM HYAP + + L + Sbjct: 191 PV-LLRPGPFTVEELKSLLGEVEIPPFARGLGEADVALAPGMKYRHYAPETPLILVDFDL 249 Query: 244 -----NPREALIRFGNVPIKN-IENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297 RE +R + + +A ++N+ L E A NL++ ++ D Sbjct: 250 ASAVRAARELGLRVAVLCLAGRCADADAAINVGS--DLYEIAKNLYDALRRVDKVKVDVA 307 Query: 298 AFSSIPNHGLGIAINNRLERAAAPR 322 ++P G+G+AI NRL +A+ + Sbjct: 308 LAPTVPERGIGLAIMNRLRKASGFK 332 >gi|227827742|ref|YP_002829522.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus islandicus M.14.25] gi|229579263|ref|YP_002837661.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus islandicus Y.G.57.14] gi|229581976|ref|YP_002840375.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus islandicus Y.N.15.51] gi|229585013|ref|YP_002843515.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus islandicus M.16.27] gi|238619914|ref|YP_002914740.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus islandicus M.16.4] gi|284997945|ref|YP_003419712.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus islandicus L.D.8.5] gi|227459538|gb|ACP38224.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus islandicus M.14.25] gi|228009977|gb|ACP45739.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus islandicus Y.G.57.14] gi|228012692|gb|ACP48453.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus islandicus Y.N.15.51] gi|228020063|gb|ACP55470.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus islandicus M.16.27] gi|238380984|gb|ACR42072.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus islandicus M.16.4] gi|284445840|gb|ADB87342.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus islandicus L.D.8.5] gi|323474810|gb|ADX85416.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus islandicus REY15A] gi|323477515|gb|ADX82753.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus islandicus HVE10/4] Length = 358 Score = 321 bits (824), Expect = 9e-86, Method: Composition-based stats. Identities = 98/329 (29%), Positives = 156/329 (47%), Gaps = 22/329 (6%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + ++KA + AG + PTETVYGL ++ + A+++++ K RP NPLI H+S+I Sbjct: 15 DKIKKAASVIKAGGTVVFPTETVYGLGANALDAEAVKKIFIAKNRPMDNPLIVHISNIDQ 74 Query: 70 VKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + A P +++ K+ WPGPLT VL T + +T L T R+P L Sbjct: 75 LYEVAKDIPEKIINIVKIVWPGPLTFVL--KKTDKVPKETTGGLDTIAVRMPAHPVALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I P+A PSAN + + S T +H++ + ++ +++D G + G+EST++NV + Sbjct: 133 INESDVPIAAPSANLATKPSPTKAEHVI-DDLFGKVDVVLDSGETFFGVESTVINVTVDP 191 Query: 188 KVRILRPGGLEIETLKRAIS----VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA--- 240 V +LRPG +E L+R E E S +PGM HYAP + + Sbjct: 192 PV-LLRPGPFSVEELERIFGKIIIPEQAKGTGEFSVALAPGMKYKHYAPTKKFLVVENRG 250 Query: 241 ---------IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291 R + V + E I + L L E + NLF+ + D Sbjct: 251 ILRDVIKELREKGYRVVFLCAHEVCKQFQEEKIEIIELGSENNLYEISRNLFDSFRKLDK 310 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320 S A S+ G+G+AI NR +A+ Sbjct: 311 SNADIGIIHSVSERGIGLAIMNRTRKASG 339 >gi|158422031|ref|YP_001523323.1| Sua5 protein [Azorhizobium caulinodans ORS 571] gi|158328920|dbj|BAF86405.1| Sua5 protein [Azorhizobium caulinodans ORS 571] Length = 354 Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats. Identities = 122/308 (39%), Positives = 168/308 (54%), Gaps = 4/308 (1%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 + G +A PTETVYGL D+ NP A+ +Y K RPA NPLI HV D++ ++ + Sbjct: 46 RLIGEGKVVAFPTETVYGLGADAGNPRAVAEVYAAKGRPAFNPLISHVPDLAAAEQLGVL 105 Query: 77 DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPL 135 + ++ LA+ FWPGPLTLV+ T I L+ A L T RVP + G P+ Sbjct: 106 NADAVKLARAFWPGPLTLVVPCRDTDAICDLARAGLSTTALRVPNHPAALAFLAAAGRPV 165 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 PSANRSG +S T H++ + + I ++D G + +G+ESTIV+ ++ R+LRPG Sbjct: 166 VGPSANRSGHVSPTTAAHVM-ADLDGRIDAVLDAGPTMVGVESTIVDCSGDEP-RLLRPG 223 Query: 196 GLEIETLKRAISVELEYCVDETST-PQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGN 254 GL ++ + L P +PG L SHYAP + VRL V P EAL+ F Sbjct: 224 GLARADIEAVLGRPLPDAAGGDEAKPSAPGRLASHYAPNATVRLDVAEVRPGEALLTFAG 283 Query: 255 VPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNR 314 E+A +LS G L EAA L+ ++ D GA+ IA +P GLG AI +R Sbjct: 284 HRPTGSESAAFVYDLSPAGDLAEAASRLYGALRAIDARGAAGIAVVPLPREGLGEAIADR 343 Query: 315 LERAAAPR 322 L RAAAPR Sbjct: 344 LGRAAAPR 351 >gi|162149092|ref|YP_001603553.1| hypothetical protein GDI_3322 [Gluconacetobacter diazotrophicus PAl 5] gi|161787669|emb|CAP57265.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus PAl 5] Length = 338 Score = 320 bits (822), Expect = 1e-85, Method: Composition-based stats. Identities = 123/320 (38%), Positives = 172/320 (53%), Gaps = 11/320 (3%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 + + +A + L AG +A TETVYGL D+ N TA+ R++ K+RP NPLI H D Sbjct: 23 NDAGIARAADLLRAGGLVAFGTETVYGLGADATNDTAVARIFAAKERPRFNPLISHFPDA 82 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126 A+ + ++ LA+ FWPGPLT+VL + I L+ A L + RVP T Sbjct: 83 EAAFAQAAPNDVARRLAERFWPGPLTMVLPRQPGSTISDLAAAGLPSVAVRVPRGAITTA 142 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+ G P+A PSAN SG++S ++ H+L + I ++D G +G+EST++++ Sbjct: 143 LLRAVGRPVAAPSANLSGRVSPSDAYHVLR-GLSGRIDAVLDSGPCPVGVESTVLDLTGT 201 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246 + +LRPGG+ +E L + P SPG L SHYAP VRL A V Sbjct: 202 APM-LLRPGGVTVEALSEVCGPISHPDDYADTLPLSPGRLASHYAPGLPVRLDAHDVAAD 260 Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS----SIAFSSI 302 EAL+ FG + A + NLS G+L EAA LF ++ D GA IA I Sbjct: 261 EALLAFG----PELPGAGLVWNLSPAGRLDEAAARLFAGLRFLDSEGARRGLVRIAAMPI 316 Query: 303 PNHGLGIAINNRLERAAAPR 322 P GLG+AI +RL RAA+PR Sbjct: 317 PRVGLGMAIRDRLRRAASPR 336 >gi|253581044|ref|ZP_04858305.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847707|gb|EES75676.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 350 Score = 320 bits (822), Expect = 1e-85, Method: Composition-based stats. Identities = 102/346 (29%), Positives = 173/346 (50%), Gaps = 29/346 (8%) Query: 2 QIMSIT----DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 +++S+T D A+R+ + L G +A PTETVYGL D+ NP A ++Y K RP+ Sbjct: 4 EVVSMTADNLDMEAIRRGGDILKQGGLVAFPTETVYGLGGDALNPQASMKIYAAKGRPSD 63 Query: 58 NPLICHVSDISMVKK-HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 NPLI H+++ + A V + LA+ +WPGPLT++ + + +T L + Sbjct: 64 NPLIVHIAEFDKLAPIVAEVPEKAKILAEKYWPGPLTMIFP--KSDLVPQETTGGLDSVA 121 Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R P ++LI+ G +A PSAN SG+ S T +H+ + + I +IIDGG IG Sbjct: 122 VRFPSDRIAQELIKAAGGYVAAPSANTSGRPSPTTAQHV-EEDLGEAIEMIIDGGQVGIG 180 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEY---CVDETSTPQSPGMLKSHYA 231 LESTIV+ + V +LRPG + +E L+ + V ++ D P++PGM HYA Sbjct: 181 LESTIVDFTEDVPV-VLRPGYISLEMLQETLGDVRMDKGLIAADSKVRPKAPGMKYRHYA 239 Query: 232 PRSQV------------RLRAIHVNPREALIRFGNVPIKNIEN---AIISLNLSKTGKLK 276 P++ + ++ + + + G + ++ + +++ + + Sbjct: 240 PKADLAIVEGPEEAVVKKINELAAEAKAHGEQVGIIATDETKDRYPEGLVVSIGSRKEEE 299 Query: 277 EAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 A +L+ ++ D S SI + +G AI NRL +AA + Sbjct: 300 TIAHHLYEVLRDFDQSAVRSIYSEAFYTPRMGQAIMNRLLKAAGHK 345 >gi|292669718|ref|ZP_06603144.1| Sua5/YciO/YrdC/YwlC family protein [Selenomonas noxia ATCC 43541] gi|292648515|gb|EFF66487.1| Sua5/YciO/YrdC/YwlC family protein [Selenomonas noxia ATCC 43541] Length = 350 Score = 320 bits (822), Expect = 1e-85, Method: Composition-based stats. Identities = 109/345 (31%), Positives = 170/345 (49%), Gaps = 28/345 (8%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +I+ T S +A + +G +A PTETVYGL + + A R+YE K RP+ NPLI Sbjct: 4 EILHPTSSVDFERAAGLIQSGELVAFPTETVYGLGANGLDAAACTRIYEAKGRPSDNPLI 63 Query: 62 CHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 H++D++M + +++ PL+ HL F PGP+T++L + I + T L T R P Sbjct: 64 LHIADLTMAHEVTSNMPPLAAHLLTAFAPGPITVILPKAAH--IPDIVTGGLSTVGVRCP 121 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 ++LI G P+A PSAN SG+ S T + + IPLI+DGG ++G+EST Sbjct: 122 DHTAARRLIRAAGVPIAAPSANTSGRPSPTTAAMVY-EDMAGRIPLILDGGSCRLGVEST 180 Query: 180 IVNVQCEKKVRILRPGGLEIETLKR---AISVELEYC-VDETSTPQSPGMLKSHYAPRSQ 235 IV+ E + +LRPG + E + AI V ++ P++PGM +HYAPR Sbjct: 181 IVDCTEEGALTLLRPGAVTREMIAAELPAIEVRIDAALTAANEAPRAPGMKYTHYAPRVP 240 Query: 236 VRLRAIHVNPREALIRF-------------------GNVPIKNIENAIISLNLSKTGKLK 276 + + A + A +R ++ I A + N G Sbjct: 241 LTVYAGMGDDIRAALRAEFLRRTAAGERPAVIASNETLTALRAIIPAEHTYNCGARGNHS 300 Query: 277 EAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 A L++ ++ DD+ +S+ GLG+AI NRL +A+ Sbjct: 301 AFAACLYDALRCFDDTDITSLLAEGTGADGLGLAIMNRLRKASGG 345 >gi|163789458|ref|ZP_02183897.1| Sua5/YciO/YrdC/YwlC family protein [Carnobacterium sp. AT7] gi|159875312|gb|EDP69377.1| Sua5/YciO/YrdC/YwlC family protein [Carnobacterium sp. AT7] Length = 341 Score = 320 bits (822), Expect = 1e-85, Method: Composition-based stats. Identities = 104/333 (31%), Positives = 166/333 (49%), Gaps = 19/333 (5%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I + + KA L G I+ PTETVYGL D+ N A++++Y K RP+ NPLI HVS Sbjct: 7 IYRPSEVLKAALKLQQGELISFPTETVYGLGADATNEAAVKKVYSAKGRPSDNPLIVHVS 66 Query: 66 DI-SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 I + + V ++ L + FWPGPLTL+ + P +TA L + R+P Sbjct: 67 AIEEVEQYVVEVSEVASKLMETFWPGPLTLIFKVKEQA-FAPTATAGLDSVAMRMPDNAL 125 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 T +LI G PL PSAN SG+ S T H+ + +I ++D G + +GLEST+++V Sbjct: 126 TLQLIRETGKPLVGPSANTSGKPSPTTAGHVF-HDLKGKIAGVLDDGETGVGLESTVLDV 184 Query: 184 QCEKKVRILRPGGLEIETLKRAISV--ELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241 + ILRPG E L++ I + + P++PGM HY+P V + Sbjct: 185 TDPVRPTILRPGATTKEALEQIIGTVYVDRHLISSDEVPKAPGMKYKHYSPNEAVVIVDG 244 Query: 242 HVNPREALI--------RFGNVPIKNI-----ENAIISLNLSKTGKLKEAAFNLFNYMKI 288 + + + I + G + + I +N + +L + + +AA L++ ++ Sbjct: 245 NHDVWQKAIETYQKQGEKVGLLAEQAIVDHFQKNVSATYSLGENKNVNDAARLLYSGLRY 304 Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 + + A+ I + GLG A NRL++AA Sbjct: 305 FEKTTATVILAQAYAEKGLGEAYMNRLKKAAGN 337 >gi|227830451|ref|YP_002832231.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus islandicus L.S.2.15] gi|227456899|gb|ACP35586.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus islandicus L.S.2.15] Length = 358 Score = 320 bits (822), Expect = 1e-85, Method: Composition-based stats. Identities = 98/329 (29%), Positives = 155/329 (47%), Gaps = 22/329 (6%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + ++KA + AG + PTETVYGL ++ + A+++++ K RP NPLI H+S+I Sbjct: 15 DKIKKAASVIKAGGTVVFPTETVYGLGANALDAEAVKKIFIAKNRPMDNPLIVHISNIDQ 74 Query: 70 VKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + A P +++ K+ WPGPLT VL T + +T L T R+P L Sbjct: 75 LYEVAKDIPEKIINIVKIVWPGPLTFVL--KKTDKVPKETTGGLDTIAVRMPAHPVALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I P+A PSAN + + S T +H++ + ++ +++D G + G+EST++NV + Sbjct: 133 INESDVPIAAPSANLATKPSPTKAEHVI-DDLFGKVDVVLDSGETFFGVESTVINVTVDP 191 Query: 188 KVRILRPGGLEIETLKRAIS----VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA--- 240 V +LRPG +E L+R E E S +PGM HYAP + + Sbjct: 192 PV-LLRPGPFSVEELERIFGKIIIPEQAKGTGEFSVALAPGMKYKHYAPTKKFLVVENRG 250 Query: 241 ---------IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291 R + V + E I + L L E + NLF + D Sbjct: 251 ILRDVIKELREKGYRVVFLCAHEVCKQFQEEKIEIIELGSENNLYEISRNLFGSFRKLDK 310 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320 S A S+ G+G+AI NR +A+ Sbjct: 311 SNADIGIIHSVSERGIGLAIMNRTRKASG 339 >gi|332796229|ref|YP_004457729.1| Sua5/YciO/YrdC/YwlC family protein [Acidianus hospitalis W1] gi|332693964|gb|AEE93431.1| Sua5/YciO/YrdC/YwlC family protein [Acidianus hospitalis W1] Length = 351 Score = 320 bits (822), Expect = 1e-85, Method: Composition-based stats. Identities = 98/325 (30%), Positives = 162/325 (49%), Gaps = 18/325 (5%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + +R+A +++ G +A PTETVYGL D+ NP A ++++ K RP NPLI H++D++ Sbjct: 15 DKIREAAKYIKLGGIVAFPTETVYGLGGDAYNPEAAIKVFKAKNRPMDNPLIVHIADLNQ 74 Query: 70 VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + A + + L +A+ WPGPLT +L T + +T L T R+P +L Sbjct: 75 LFDVAKDIPDIVLDMAQKVWPGPLTFIL--KKTDKVPKETTGGLDTVAVRMPAHPIALQL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I G P+A PSAN + + S T +H++ + + ++ +IIDGG + G+ESTI+N+ Sbjct: 133 IRESGVPIAAPSANLATKPSPTKAEHVI-ADLNGKVDVIIDGGDTFFGVESTIINMTVNP 191 Query: 188 KVRILRPGGLEIETLKRAIS----VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 V +LRPG +E L + + E E + +PGM HYAP ++ L + Sbjct: 192 PV-LLRPGPFTLEELHQFLPEIVIPEQLIKGGEFTVALAPGMKYRHYAPSKKLLLVENYS 250 Query: 244 NPREAL----IRFGNVPIKNIEN----AIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 ++ + ++ + E+ + L L E A NLF+ + D Sbjct: 251 IFKDVVKLLRSKYKVAVLCTTEDFKDFEEPRIILGSRENLYEIAKNLFDSFRKLDRLDVD 310 Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320 +P G+G AI NR +A+ Sbjct: 311 MGVMEGVPEKGIGFAIMNRARKASG 335 >gi|302527583|ref|ZP_07279925.1| Sua5/YciO/YrdC/YwlC protein [Streptomyces sp. AA4] gi|302436478|gb|EFL08294.1| Sua5/YciO/YrdC/YwlC protein [Streptomyces sp. AA4] Length = 338 Score = 320 bits (822), Expect = 1e-85, Method: Composition-based stats. Identities = 111/323 (34%), Positives = 161/323 (49%), Gaps = 16/323 (4%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 + KA L AG +A PTETVYGL D+ +P A+ R+Y+ K RP+ +PLI H++ + Sbjct: 22 DIEKAAGVLRAGGLVAFPTETVYGLGADASDPAAVSRIYQAKGRPSTHPLIVHLAGAGFL 81 Query: 71 KKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 P LA+ FWPGPLTLVL + +T L+T RVP L+ Sbjct: 82 DGWVEKLPEPARLLAERFWPGPLTLVLRRGP--RVSSAATGGLETVGVRVPDHPVALALL 139 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 +G A PSANR G +S T +H+ + + + ++DGG ++G+ESTIV+ + Sbjct: 140 SAFGGGAAAPSANRFGSVSPTTAEHV-RAELGDAVDFVLDGGPCQVGVESTIVDATSD-T 197 Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL--------RA 240 + +LRPGG+ E L+ + L+ V TS + PG SHYAPR++V L A Sbjct: 198 LSVLRPGGVPREDLEAVLGGPLD--VPSTSPIRVPGQHPSHYAPRAKVVLVEPDQVVAEA 255 Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300 H + P +N ++ E A L+ +++ D G I S Sbjct: 256 AHARKLGHRVGVFLPPSQNGGAPEAHAVVAVPESTAEYARGLYGFLRELDRQGCDLIVAS 315 Query: 301 SIPNHGLGIAINNRLERAAAPRN 323 GLG+AI NRL RAA PR+ Sbjct: 316 LPEETGLGLAIANRLRRAAGPRS 338 >gi|291294802|ref|YP_003506200.1| Sua5/YciO/YrdC/YwlC family protein [Meiothermus ruber DSM 1279] gi|290469761|gb|ADD27180.1| Sua5/YciO/YrdC/YwlC family protein [Meiothermus ruber DSM 1279] Length = 316 Score = 320 bits (822), Expect = 1e-85, Method: Composition-based stats. Identities = 118/321 (36%), Positives = 172/321 (53%), Gaps = 10/321 (3%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 ++ T N L +A + + +G +A PTETVYGL ++ + A R++E K+RP+ +PLI Sbjct: 2 VVPPTPEN-LERAAQIIRSGGLVAFPTETVYGLGANALDARAAARIFEAKQRPSFDPLIV 60 Query: 63 HVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 HV+D M++K V L+ L + FWPGPLTLVL + + L T+ L T R+P Sbjct: 61 HVADRGMLQKVVQEVPALAERLMERFWPGPLTLVLPR--SERVPGLVTSGLPTVAVRMPA 118 Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 ++LI G PLA PSAN G +S T +H+ + + LI+DGG ++ G+ESTI Sbjct: 119 HPVAQELIRRAGLPLAAPSANPFGYLSPTRAEHV-ERMLGGRVDLILDGGRTEFGVESTI 177 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 V +K +LR G + +E L+R + LE V P PG L HYAP + +R+ Sbjct: 178 V--LLAEKPTVLRYGAVAVEELERVLG-RLELQVGAREKPLVPGQLPQHYAPHTPIRIAP 234 Query: 241 IHVNPREALIRFGNVPIKNIENAI-ISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF 299 P R G + + + + LS TG L EAA +LF + D G +I Sbjct: 235 PSEIPLGLRKRVGYLAFQEVPKGFKVVKVLSPTGSLLEAAAHLFEALHQLDRLGLEAIYA 294 Query: 300 SSIPNHGLGIAINNRLERAAA 320 IP GLG AI +RL RA++ Sbjct: 295 EPIPEVGLGRAIMDRLRRASS 315 >gi|330993932|ref|ZP_08317862.1| hypothetical protein SXCC_03827 [Gluconacetobacter sp. SXCC-1] gi|329758878|gb|EGG75392.1| hypothetical protein SXCC_03827 [Gluconacetobacter sp. SXCC-1] Length = 325 Score = 320 bits (822), Expect = 2e-85, Method: Composition-based stats. Identities = 133/330 (40%), Positives = 178/330 (53%), Gaps = 14/330 (4%) Query: 1 MQIMSITD-SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 MQ + D + +A L AG +A TETVYGL D+RN A+ +Y K RP +NP Sbjct: 1 MQTRLLPDTPHGREEAAAILRAGGLVAFGTETVYGLGADARNDHAVAAIYAAKGRPGINP 60 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 LI H + + PL+ LA FWPGPLTLVL I P++TA L TA RV Sbjct: 61 LISHFTTADAAFAQVTPTPLARGLASRFWPGPLTLVLPRAPGCAISPIATAGLSTAAVRV 120 Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P G T+ L+ G P+ PSAN SG++S ++ H+L + + I ++D G +G+ES Sbjct: 121 PAGGNTRALLAACGFPVVAPSANPSGRVSPSDALHVL-AGLDGRIDAVLDCGPCHVGVES 179 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAIS--VELEYCVDETSTPQSPGMLKSHYAPRSQV 236 TIV++ V +LRPGG+ +E L+ A V + S P +PG L SHYAP V Sbjct: 180 TIVDLSGPAPV-LLRPGGVTLEALEAACGMPVAMPRASSNDSRPLAPGQLSSHYAPGLAV 238 Query: 237 RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD----DS 292 RL A V EAL+ FG + + + NLS G L+EAA LF ++ D Sbjct: 239 RLDADTVGADEALLAFG----PPLPGSPLVWNLSARGDLREAAARLFAGLRFLDMEGHRR 294 Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAAPR 322 G IA +P HGLG AI +RL RAA+PR Sbjct: 295 GLVRIAVQPVPAHGLGRAIRDRLVRAASPR 324 >gi|310815072|ref|YP_003963036.1| Sua5/YciO/YrdC family protein [Ketogulonicigenium vulgare Y25] gi|308753807|gb|ADO41736.1| Sua5/YciO/YrdC family protein [Ketogulonicigenium vulgare Y25] Length = 321 Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats. Identities = 133/303 (43%), Positives = 178/303 (58%), Gaps = 12/303 (3%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81 G +A+PTETVYGLA D+ A+ +Y K RP+ NPLI HV+DI+ V A++ SL Sbjct: 29 GQQVAVPTETVYGLAADATCDDAVAGIYAAKGRPSFNPLIVHVADIADVAAFAALSGESL 88 Query: 82 HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140 LA+ FWPGPLTLVL L + I L TA L+T R+P + LI+ G PLA+PSA Sbjct: 89 ALAQAFWPGPLTLVLPLRADAPISKLVTAGLETVAVRLPAHPVARALIKAAGVPLAMPSA 148 Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200 N SG+IS T +H+L + I ++DGG S +G+ESTIV V +LR GG+ + Sbjct: 149 NPSGRISPTAAQHVL-DGLAGRIAAVVDGGPSGVGVESTIV-VAGRGDAIVLRAGGVTPD 206 Query: 201 TLKRAISV-ELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKN 259 + + L + + + P +PG L SHYAP+ VRL A E ++ FG+V Sbjct: 207 EIAAVLGYAPLRPDLSDEARPNAPGQLLSHYAPKGHVRLNATTAAAGEVMLGFGDV---- 262 Query: 260 IENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 + L LS G L+EAA NLF D GA +IA + IP+ GLG+AIN+RL RAA Sbjct: 263 ----VGDLTLSARGDLREAAANLFACFHRLDAMGAMAIAVAPIPDTGLGLAINDRLRRAA 318 Query: 320 APR 322 APR Sbjct: 319 APR 321 >gi|227513057|ref|ZP_03943106.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus buchneri ATCC 11577] gi|227524272|ref|ZP_03954321.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus hilgardii ATCC 8290] gi|227083632|gb|EEI18944.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus buchneri ATCC 11577] gi|227088503|gb|EEI23815.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus hilgardii ATCC 8290] Length = 340 Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats. Identities = 104/337 (30%), Positives = 169/337 (50%), Gaps = 21/337 (6%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ + I + + +A F+ G ++ PTETVYGL D+ N TA++++Y K RP+ NPL Sbjct: 1 MKTL-ILKKDQIEQAANFIKKGELVSFPTETVYGLGADATNETAVKKVYAAKGRPSDNPL 59 Query: 61 ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I VS + MVKK+ ++ + L K FWPG LT++ L + T L TA FR Sbjct: 60 IVTVSSVEMVKKYVDHINDDAQKLIKAFWPGSLTMIFKLKPNV-LSKAVTGGLNTAAFRF 118 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T LI G P+ PSAN SG+ S T +H+ + +I I+D G + +G+ES Sbjct: 119 PQNQLTLDLITKAGVPIVGPSANTSGKPSPTTAQHVY-HDLNGKIAAIVDDGPTTVGVES 177 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAIS---VELEYCVDETSTPQSPGMLKSHYAPRSQ 235 T++++ K ILRPG + + ++ I ++ + V TP++PGM HYAP +Q Sbjct: 178 TVLDMSV-KTPSILRPGAVTKDDIEAVIHQNVIDELHHVGTDQTPKAPGMKYKHYAPNAQ 236 Query: 236 VRLRAIHVNPREALIRFGN----VPIKNIENAIISLNLSKTGKL-------KEAAFNLFN 284 V + + + N V + +N I S++ ++ + A+ +LF Sbjct: 237 VYIVDPEDSWLDVAKWIENHPQPVGVMAFDNVISSIDWPMNAQIVTLGSNSRTASRDLFA 296 Query: 285 YMKIADDS-GASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ D+ I + G+ A NRL ++A Sbjct: 297 DLREFDNHPEIKIIFTQGLKPSGIAEAYMNRLNKSAG 333 >gi|282600841|ref|ZP_05979863.2| Sua5/YciO/YrdC/YwlC family protein [Subdoligranulum variabile DSM 15176] gi|282571097|gb|EFB76632.1| Sua5/YciO/YrdC/YwlC family protein [Subdoligranulum variabile DSM 15176] Length = 339 Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats. Identities = 108/337 (32%), Positives = 175/337 (51%), Gaps = 21/337 (6%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 Q++ ++ ++ A E L G +A+PTETVYG+A D+RN A+R+++E K RP NPLI Sbjct: 4 QVLPVS-GESIALAAELLRQGELVALPTETVYGIAADARNGDAVRKIFEAKGRPQDNPLI 62 Query: 62 CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 H+ + M++ V +L LA FWPGPLT+V+ + ++ ++ A L T R+P Sbjct: 63 VHICGMDMLQGIVSEVPERALKLAAAFWPGPLTMVMPRGA--EVSEVTCAGLDTVGVRMP 120 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + +I+ G A PSAN SG+ S TN + L + + +PLI+DGG S +G+EST Sbjct: 121 SHPVVQAVIKASGVAFAAPSANLSGKPSPTNAQDTL-ADMHGRLPLILDGGESAVGVEST 179 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYC------VDETSTPQSPGMLKSHYAPR 233 +V+V E + +LRPG + E ++ + E++ + E +SPGM HYAP+ Sbjct: 180 VVSVTGEHPI-LLRPGYITKEQMEAVLGEEVQVSPAILEKLKEGEVARSPGMKYKHYAPK 238 Query: 234 SQVRLRAIHVNPREALIRFGNVP--------IKNIENAIISLNLSKTGKLKEAAFNLFNY 285 +QV + + + P + + + S+ + A +LF Sbjct: 239 AQVTILRGNFEAYCRYVAEHAAPGVWALCFDGEGAQLPVPSIEYGRNHDGATQAHHLFTA 298 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 ++ D GA + G+ +A+ NRL RAAA R Sbjct: 299 LRDLDRHGAQVVYARCPEQDGISMAVYNRLIRAAAFR 335 >gi|326692968|ref|ZP_08229973.1| putative translation factor [Leuconostoc argentinum KCTC 3773] Length = 335 Score = 320 bits (820), Expect = 3e-85, Method: Composition-based stats. Identities = 102/328 (31%), Positives = 168/328 (51%), Gaps = 16/328 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +++A L AG +A PTETVYGL D+ N A+++++ K RPA NPLI V+D+ Sbjct: 8 TQDVQQAGALLKAGEVVAFPTETVYGLGADATNDAAVKKVFLAKNRPADNPLIMTVADVE 67 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127 + ++ + L FWPG LT+++ + + L T L+T FR+P + + Sbjct: 68 QLTPFVTISEAARQLMTAFWPGSLTIIMPIKP-DQVSMLVTGGLQTVAFRLPANETARAV 126 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I G P+ PSAN SG+ S T +H+ + I I+D G +++G+EST++++ + Sbjct: 127 IRAAGVPIVGPSANTSGKPSPTTAQHVW-HDMQGRIAAIVDDGPTEVGVESTVIDMSTDT 185 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETS-----TPQSPGMLKSHYAPRSQVRL--RA 240 ILRPG + + L+ + + TS TP++PGM HYAP V + R Sbjct: 186 P-TILRPGAVTQQQLEAVLQQPVFDATSTTSVASHVTPKAPGMKYRHYAPDKTVVMFDRL 244 Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKE----AAFNLFNYMKIADDS-GAS 295 + R L V ++ A + L +++T L E A LF ++ D++ + Sbjct: 245 DALALRSNLTAQDVVMAQDDTLATLQLPMTQTWSLGETLESATEQLFAGLRFYDETPEVA 304 Query: 296 SIAFSSIPNHGLGIAINNRLERAAAPRN 323 +I +P G+G A NNRL +AA + Sbjct: 305 TIYVEKMPPIGIGKAYNNRLAKAAGNQE 332 >gi|171186194|ref|YP_001795113.1| Sua5/YciO/YrdC/YwlC family protein [Thermoproteus neutrophilus V24Sta] gi|170935406|gb|ACB40667.1| Sua5/YciO/YrdC/YwlC family protein [Thermoproteus neutrophilus V24Sta] Length = 345 Score = 320 bits (820), Expect = 3e-85, Method: Composition-based stats. Identities = 104/339 (30%), Positives = 161/339 (47%), Gaps = 21/339 (6%) Query: 1 MQIMSIT----DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56 M+I+ D ++ A E L G +A PTETVYGL D+R+ R+++ K RP Sbjct: 1 MKILRTDPLRPDPQVVKTAAEVLRRGGIVAAPTETVYGLFADARSDAGCARVFKAKGRPP 60 Query: 57 MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 NPLI HV + M + A V + K WPGPLTLVL S + TA L+T Sbjct: 61 DNPLIVHVDSVEMATEVAEVPAELYEVLKRVWPGPLTLVL--KSKGVVSRCVTAGLETVA 118 Query: 117 FRVPCGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R P +I G P+A PSAN++G+ S T +H++ + E+ +++DGG + G Sbjct: 119 VRAPAHPVPLAIIRELGAPIAGPSANKAGRPSPTAAEHVV-EDLGGEVDVVVDGGPTFFG 177 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAIS----VELEYCVDETSTPQSPGMLKSHYA 231 +ESTI++V + +LRPG +E L+R + + E +PGM HYA Sbjct: 178 VESTIIDVTKRPPL-LLRPGPFTVEELERFFGPIEVPPVARGLSEADVAVAPGMKYRHYA 236 Query: 232 PRSQVRLRAIHVNPREALIRFGNV------PIKNIENAIISLNLSKTGKLKEAAFNLFNY 285 P + + + ++ A +R + + A L L + E A NL+ Sbjct: 237 PDTPLVVVHFDLSAAAAALRSRGLRVAVLCAVGKCAEADAVLRLG--DDIYEVAKNLYGA 294 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQ 324 ++ D ++ G+G+A+ NRL +AA R Sbjct: 295 LRELDRLSVDVGLVPAVEERGIGLAVMNRLRKAAGHREA 333 >gi|300855871|ref|YP_003780855.1| putative translation factor [Clostridium ljungdahlii DSM 13528] gi|300435986|gb|ADK15753.1| putative translation factor [Clostridium ljungdahlii DSM 13528] Length = 349 Score = 319 bits (819), Expect = 3e-85, Method: Composition-based stats. Identities = 104/340 (30%), Positives = 166/340 (48%), Gaps = 24/340 (7%) Query: 2 QIMSITDSNA----LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 +++ + D NA + K E+L G +AIPTETVYGLA D+ N A+++++++K RP Sbjct: 9 EVLYVKDLNANYQNIVKGAEYLKKGEVVAIPTETVYGLAADAFNENAVKKIFKVKGRPQD 68 Query: 58 NPLICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 NPL+ H+ + V + + FWPG +TL+ + I +A +KT Sbjct: 69 NPLLVHIYKLEQVYDICKDIHKDAEKVFDAFWPGSVTLIFNKKDC--ISDTVSAGMKTVG 126 Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R P + +I+ G L PSAN SG+ S T+ +H + + +IP I+DGG IG Sbjct: 127 VRFPKSEVARAIIKESGTLLVAPSANLSGKPSTTSAEHCYND-LNGKIPCILDGGPCSIG 185 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAIS----VELEYCVDETSTPQSPGMLKSHYA 231 LESTI+++ V +LRPG + ++ +++ I + V P++PGM HYA Sbjct: 186 LESTIIDMSTPDPV-LLRPGAISLDDIRKVIPNLVYKKNLLSVKGNEIPKAPGMKYRHYA 244 Query: 232 PRSQVRLRAIHVNPREALIRFG----------NVPIKNIENAIISLNLSKTGKLKEAAFN 281 P + V L I+ +K+ +N +L L AA Sbjct: 245 PDAPVTLVKGDYAKTSKWIKENANEENAVICFQEFLKDFKNYEHVYSLGSFKTLNAAAQK 304 Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 F+ ++ D S I + + GLG +I NRLE+A+A Sbjct: 305 TFDLLRECDKLNISHIYVQAPKDSGLGNSIINRLEKASAG 344 >gi|260951309|ref|XP_002619951.1| hypothetical protein CLUG_01110 [Clavispora lusitaniae ATCC 42720] gi|238847523|gb|EEQ36987.1| hypothetical protein CLUG_01110 [Clavispora lusitaniae ATCC 42720] Length = 388 Score = 319 bits (819), Expect = 3e-85, Method: Composition-based stats. Identities = 104/345 (30%), Positives = 168/345 (48%), Gaps = 28/345 (8%) Query: 2 QIMSITDSNALRKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 QI LR A + G +A PTETVYGL + + ++R +Y K RPA NPL Sbjct: 36 QISDAETLENLRLAASHVRQSGSIVAFPTETVYGLGGSALDDDSVRAIYTAKNRPADNPL 95 Query: 61 ICHVSDISMVKKHA-----SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115 I HV+ + +++ + + L FWPGPLT++L + + + L TA T Sbjct: 96 IVHVASVDQIQRLILPSSRQIPAVYEKLIAKFWPGPLTILLPIEKGSPVSQLVTAGQNTV 155 Query: 116 CFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174 R+P + LI PLA PSAN S + S T +H+L + IP I+DGG + Sbjct: 156 GVRMPSDSVARALIALSDTPLAAPSANASTRPSPTLAEHVLYD-LDTRIPYILDGGPCTV 214 Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAISVE------LEYCVDETSTPQSPGMLKS 228 G+EST+V+ + +LRPGG+ E ++ + + +T ++PGM Sbjct: 215 GVESTVVDGLVSPPM-LLRPGGVSPEQIRESGGYGWNEVILAKKTAGKTEPVRTPGMKYR 273 Query: 229 HYAPRSQVRLRAIHVNPREALIRF-----GNVPI----KNIENAIISLNLSKTG----KL 275 HY+P ++V L + R A+ ++ G V + + + + + +++S Sbjct: 274 HYSPTARVILFVGCGDGRTAVRKYVDQHSGRVALLRSKQFVPASEMGISVSSDKEMGTSA 333 Query: 276 KEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 E A NLF ++ D+SG I ++ G G+A+ NRL +AA+ Sbjct: 334 AEVARNLFRLLREVDESGVDMILVEAVDEVGDGLAVMNRLSKAAS 378 >gi|313113833|ref|ZP_07799400.1| Sua5/YciO/YrdC/YwlC family protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310623860|gb|EFQ07248.1| Sua5/YciO/YrdC/YwlC family protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 358 Score = 319 bits (819), Expect = 4e-85, Method: Composition-based stats. Identities = 108/340 (31%), Positives = 170/340 (50%), Gaps = 26/340 (7%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +I+ +D ++ KA L G +A+PTETVYG+A D+RN A+++++ K RP NPLI Sbjct: 22 EILPASDEKSIEKAAALLQNGELVALPTETVYGIAADARNGEAVKKIFVAKGRPQDNPLI 81 Query: 62 CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 HV+ M+ V + L F PGPLT+++ ++ A L T R+P Sbjct: 82 VHVTGPEMLPGLVSEVPERAQLLMAAFCPGPLTIIMPRGP--EVAAECCAGLDTVGIRMP 139 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + +IE G A PSAN SG+ S TN + + + + +PLI+DGG +G+EST Sbjct: 140 SHPVARAVIEKSGCAFAAPSANLSGKPSPTNAQDVFTD-MDGRLPLILDGGECDVGVEST 198 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYC------VDETSTPQSPGMLKSHYAPR 233 +V+V EK + RPG + +E L+RA+ E+E + E + +SPGM HYAP+ Sbjct: 199 VVSVVGEKP-TLFRPGHITLEDLERALGEEVEVSKAILEKLPEGAVVRSPGMKYKHYAPK 257 Query: 234 SQVRL-----------RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNL 282 + V L H + + F K + + + G + A ++ Sbjct: 258 ADVTLLDGTFEQFKAYVDAHAEQNPSCLCFTGEAEKL---GVPCVEYGREGDGADQAKHI 314 Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 F ++ D+ G + + GL +A+ NRL RAAA R Sbjct: 315 FRCLRALDEQGDAVVYARCPQKDGLSMAVYNRLIRAAAFR 354 >gi|291166474|gb|EFE28520.1| Sua5/YciO/YrdC/YwlC family protein [Filifactor alocis ATCC 35896] Length = 339 Score = 319 bits (818), Expect = 4e-85, Method: Composition-based stats. Identities = 98/329 (29%), Positives = 159/329 (48%), Gaps = 17/329 (5%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + ++KA + G + PTETVYGL D+ NP A ++Y K RP+ NPLI H+SD+ Sbjct: 14 DDDKIKKASNIIQNGGLVIFPTETVYGLGADAFNPVASEKIYSAKGRPSDNPLILHISDL 73 Query: 68 SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125 M+ K V + L FWPGPLT++ + + T L T R+P Sbjct: 74 DMLNKIVKNVPEKANKLINQFWPGPLTIIFE--KKDIVSDKITGGLNTVAVRMPSNPIAL 131 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 I P+A PSAN SG+ SIT + + + + I+ S+IGLESTI+++ Sbjct: 132 SFIRNANTPIAAPSANISGKPSITRWEDAV-EEMGNRVDAILLSEPSEIGLESTIIDLTQ 190 Query: 186 EKKVRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 + + ILR G + +++AI E++ + E P++PGM HY+P ++V + + Sbjct: 191 DVPM-ILRVGKISKTEIEKAIGFTEIDKTIFGEKDIPKAPGMKYKHYSPNAEVFIASKEN 249 Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLK---------EAAFNLFNYMKIADDSGA 294 + ++ P N ++ N S K +AA F++++ AD G Sbjct: 250 FVEKVKQKYKASPSCNTVIFTMNQNKSYFKDEKVYLLGETTLQAAKFFFHFLRKADKEGY 309 Query: 295 SSIAFSSIPNHGLGIAINNRLERAAAPRN 323 +I I +G A+ NR ++A + Sbjct: 310 DTIIMEDISFDEIGEAVMNRARKSAGNKY 338 >gi|260102572|ref|ZP_05752809.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus helveticus DSM 20075] gi|260083599|gb|EEW67719.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus helveticus DSM 20075] Length = 339 Score = 319 bits (818), Expect = 4e-85, Method: Composition-based stats. Identities = 105/334 (31%), Positives = 159/334 (47%), Gaps = 19/334 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ I + + +A + L G +A PTETVYGL + +++ +Y K RP+ NPL Sbjct: 7 MET-KIFKKDQIDEAVKLLAEGELVAFPTETVYGLGAIATKEKSVKGVYAAKGRPSDNPL 65 Query: 61 ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I VSD M++++A V + L K F PGPLTL+L + T + T L T FR Sbjct: 66 IVTVSDEKMMERYAKEVPERAKKLIKHFCPGPLTLLLFVKPGT-LPDAVTGGLDTVAFRC 124 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T LI G+P+ PSAN S + S T +H+ + +I IIDGG ++ GLES Sbjct: 125 PDDQLTHDLIAKLGYPIVGPSANISTKPSPTTAEHVY-HDLKDKIAGIIDGGPTRFGLES 183 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD---ETSTPQSPGMLKSHYAPRSQ 235 TI+++ + + +LRPG + E L + ++ + P++PGM HYAP Sbjct: 184 TIIDLSVKTPI-VLRPGEITPEELSEVLGEKVLINTGKVADKDVPKAPGMKYRHYAPSEP 242 Query: 236 VRLR-------AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKI 288 V + I N + + G+V + +L K L +A NLF ++ Sbjct: 243 VVVVDDPADFGKIDFNDKTGVAALGSVLDQINLPEENKFDLGK--NLIDADHNLFGALRY 300 Query: 289 ADDS-GASSIAFSSIPNHGLGIAINNRLERAAAP 321 DD +I +A NRL +AA Sbjct: 301 FDDKDDIETIYVQGFDEGEESLAYMNRLNKAAGG 334 >gi|189218176|ref|YP_001938818.1| translation factor SUA5 [Methylacidiphilum infernorum V4] gi|189185034|gb|ACD82219.1| Putative translation factor SUA5 [Methylacidiphilum infernorum V4] Length = 324 Score = 319 bits (818), Expect = 4e-85, Method: Composition-based stats. Identities = 119/321 (37%), Positives = 172/321 (53%), Gaps = 16/321 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 A+ KA + L+ G +AIPTETVYGLA D NP A+ R++E+KKRP ++P+I H S + Sbjct: 11 KKAIEKAVDLLNKGEVVAIPTETVYGLAADGLNPEAVARIFELKKRPKIDPVIVHCSSLK 70 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126 V + + + L + FWPGPLTLVL + I + TA L A FRVP T + Sbjct: 71 EVGFYVCDLPDEARILGESFWPGPLTLVLKKKES--IPDIVTAGLPFAGFRVPKHPLTLE 128 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LI+ +G PLA PSAN+ G+IS T + + + IP I+DGG ++G+EST+V+ + Sbjct: 129 LIQKFGRPLAAPSANKFGKISPTTAQAVY-EEFDQIIPFILDGGPCQVGIESTVVSF-AQ 186 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR------A 240 +LR G + E ++R I + T +PG HYAP + + Sbjct: 187 IPPLLLRFGAISKEEIERKIG-PVTIPPPSTGWNLAPGRFPRHYAPSTPLETVFTLTDLP 245 Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300 ++ AL+ +G + + NLS L EAA NLF ++ D SG I Sbjct: 246 LYKRKNSALLFWGEEDTQGFKT---FRNLSPRKSLTEAAANLFQMLRDLDKSGVEKIYAL 302 Query: 301 SIPNHGLGIAINNRLERAAAP 321 +P GLGIAIN+RL++AA Sbjct: 303 LLPEKGLGIAINDRLKKAAGK 323 >gi|209545165|ref|YP_002277394.1| Sua5/YciO/YrdC/YwlC family protein [Gluconacetobacter diazotrophicus PAl 5] gi|209532842|gb|ACI52779.1| Sua5/YciO/YrdC/YwlC family protein [Gluconacetobacter diazotrophicus PAl 5] Length = 323 Score = 319 bits (818), Expect = 4e-85, Method: Composition-based stats. Identities = 123/320 (38%), Positives = 172/320 (53%), Gaps = 11/320 (3%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 + + +A + L AG +A TETVYGL D+ N TA+ R++ K+RP NPLI H D Sbjct: 8 NDAGIARAADLLRAGGLVAFGTETVYGLGADATNDTAVARIFAAKERPRFNPLISHFPDA 67 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126 A+ + ++ LA+ FWPGPLT+VL + I L+ A L + RVP T Sbjct: 68 EAAFAQAAPNDVARRLAERFWPGPLTMVLPRQPGSTISDLAAAGLPSVAVRVPRGAITTA 127 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+ G P+A PSAN SG++S ++ H+L + I ++D G +G+EST++++ Sbjct: 128 LLRAVGRPVAAPSANLSGRVSPSDAYHVLR-GLSGRIDAVLDSGPCPVGVESTVLDLTGT 186 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246 + +LRPGG+ +E L + P SPG L SHYAP VRL A V Sbjct: 187 APM-LLRPGGVTVEALSEVCGPISHPDDYADTLPLSPGRLASHYAPGLPVRLDAHDVAAD 245 Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS----SIAFSSI 302 EAL+ FG + A + NLS G+L EAA LF ++ D GA IA I Sbjct: 246 EALLAFG----PELPGAGLVWNLSPAGRLDEAAARLFAGLRFLDSEGARRGLVRIAAMPI 301 Query: 303 PNHGLGIAINNRLERAAAPR 322 P GLG+AI +RL RAA+PR Sbjct: 302 PRVGLGMAIRDRLRRAASPR 321 >gi|260576257|ref|ZP_05844249.1| Sua5/YciO/YrdC/YwlC family protein [Rhodobacter sp. SW2] gi|259021525|gb|EEW24829.1| Sua5/YciO/YrdC/YwlC family protein [Rhodobacter sp. SW2] Length = 318 Score = 319 bits (818), Expect = 4e-85, Method: Composition-based stats. Identities = 125/319 (39%), Positives = 175/319 (54%), Gaps = 17/319 (5%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A L G +A+PTETVYGLA D+R + R++ K RP NPLI H+ +++ Sbjct: 11 PAGIARAAAILRGGGLVAMPTETVYGLAGDARLDATVARIFAAKGRPGFNPLIVHLENLA 70 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 ++ A D + LA+ FWPGPLTLVL + + PL +A L + R+P + L Sbjct: 71 QARELAVFDARAEALAQAFWPGPLTLVLPRRADAGLSPLVSAGLASVALRLPAHPVARAL 130 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + +G PLA PSAN SG++S T H+ + I I+DGG ++G+ES+IV + Sbjct: 131 LAAFGGPLAAPSANPSGRVSPTTSAHV-RDGLGGRIDAILDGGACEVGVESSIVGLT--G 187 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 +LRPGG+ +E L+ A+ L D + +PG L SHYAP + VRL P E Sbjct: 188 PATLLRPGGIPLEALEAALGSRLVTAAD-PAKITAPGQLASHYAPSAAVRLNVTSPLPDE 246 Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDS----GASSIAFSSIP 303 + FG +L LS G L EAA LF+ ++ AD GA IAF+ +P Sbjct: 247 VWVGFGPAC------PGAALTLSPNGDLVEAAAALFHILRRADALAGPNGA--IAFAPVP 298 Query: 304 NHGLGIAINNRLERAAAPR 322 GLG AIN+RL RAAAPR Sbjct: 299 ETGLGRAINDRLRRAAAPR 317 >gi|58038771|ref|YP_190735.1| hypothetical protein GOX0296 [Gluconobacter oxydans 621H] gi|58001185|gb|AAW60079.1| Hypothetical protein GOX0296 [Gluconobacter oxydans 621H] Length = 337 Score = 318 bits (817), Expect = 5e-85, Method: Composition-based stats. Identities = 124/330 (37%), Positives = 176/330 (53%), Gaps = 15/330 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD-- 66 +R+A E L AG +A TETVYGL + + TA+ +++ K RP NPLI H+ D Sbjct: 14 PEGIRRAAELLKAGKLVAFGTETVYGLGAIASSDTAVAKIFAAKGRPRFNPLISHLPDAE 73 Query: 67 --ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF- 123 + ++ ++ LA+ FWPGPLT+VL + + L+ A L T RVP G Sbjct: 74 SAFAQASLSGRMEEIAHALAERFWPGPLTMVLPRSPNSTVSDLAAAGLSTLALRVPRGKT 133 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 L+ G P+A PSAN SG +S ++ H+L S + I ++D G IG+EST++++ Sbjct: 134 ALALLREVGAPVAAPSANVSGTVSPSDAFHVLRS-LDGRIDAVLDSGPCSIGVESTVLDL 192 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 E V +LRPGG+ +E L P SPG L SHYAP VRL A + Sbjct: 193 TREVPV-LLRPGGVTLEELTALCGPIRHPDDFSEIAPASPGRLASHYAPSLPVRLDATSI 251 Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDS----GASSIAF 299 P EA + FG + A ++ NLS++G L+EAA LF ++ D G +IA Sbjct: 252 APDEAQLAFGT----PLPGAGLTWNLSESGNLEEAAARLFAGLRFLDAEGTRRGLKTIAA 307 Query: 300 SSIPNHGLGIAINNRLERAAAPRNQSQRIV 329 IP HGLG+AI +RL RAA PR + + Sbjct: 308 QPIPRHGLGLAIRDRLRRAAEPRTHAATLT 337 >gi|310659435|ref|YP_003937156.1| sua5/ycio/yrdc/ywlc family protein [Clostridium sticklandii DSM 519] gi|308826213|emb|CBH22251.1| sua5/yciO/yrdC/ywlC family protein [Clostridium sticklandii] Length = 347 Score = 318 bits (817), Expect = 6e-85, Method: Composition-based stats. Identities = 112/330 (33%), Positives = 172/330 (52%), Gaps = 21/330 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 L K L AG + PTETVYGL ++ +P A +++YE K RP+ NPLI H+S Sbjct: 19 DEQLHKVANLLKAGKTVVFPTETVYGLGANALDPEAAKKIYEAKGRPSDNPLIVHISKKE 78 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126 V A ++ S L + FWPGPLTL+LD + I +T L T R+P +K Sbjct: 79 DVDFLAGNISQDSKLLMEDFWPGPLTLILDKSDSVPI--ETTGGLMTVAIRMPSNPIARK 136 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LI+ G P+A PSAN SG+ SIT+ K+++ +C+ + II S+IGLEST+V++ Sbjct: 137 LIDLAGVPIAAPSANISGRPSITSSKYLV-EELCERVDAIIISEDSEIGLESTVVDMTAS 195 Query: 187 KKVRILRPGGLEIETLKRAISVELEY---CVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 V ILRPG + +++ ++ E+E DE + P+SPGM HY+P + V + + Sbjct: 196 TPV-ILRPGKIGKTEIEKILNKEIELDPSLKDENAAPKSPGMKYKHYSPNATVIVVTGSL 254 Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLK------------EAAFNLFNYMKIADD 291 + + I KNI + + + L L EAA NLF +++ D+ Sbjct: 255 DEMKQKINQKLSLDKNIGDKVKVVCLEDRVSLYDGYGISWGKSSQEAAKNLFKILRLMDE 314 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAAP 321 + F ++ + + A+ NRL +AA Sbjct: 315 QNIEVVYFEALNSDEISEAVMNRLIKAAGN 344 >gi|294675961|ref|YP_003576576.1| Sua5/YciO/YrdC/YwlC family protein [Rhodobacter capsulatus SB 1003] gi|294474781|gb|ADE84169.1| Sua5/YciO/YrdC/YwlC family protein [Rhodobacter capsulatus SB 1003] Length = 319 Score = 318 bits (817), Expect = 6e-85, Method: Composition-based stats. Identities = 128/304 (42%), Positives = 171/304 (56%), Gaps = 17/304 (5%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 +A PTETVYGL D+R TA+ +Y K RP NPLI HV+D+ M ++ A + LA Sbjct: 28 VAFPTETVYGLGGDARQDTAVAAIYAAKGRPQFNPLIVHVADMEMAEQVAVFSDQARDLA 87 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRS 143 FWPGPLTLVL I L TA L T R+P + L+ +G PLA PSAN S Sbjct: 88 ARFWPGPLTLVLPARPEAGISDLVTAGLATVAVRMPAHPVARALLAAFGGPLAAPSANPS 147 Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203 G++S T H+L + I ++DGG +G+ESTI+ + +LRPGG+++ETL+ Sbjct: 148 GKVSPTEADHVL-EGLSGRIAAVVDGGACPVGVESTILGLA---PPVLLRPGGVDVETLE 203 Query: 204 RAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENA 263 +A+ L + + P +PG L SHYAP + VRL A P E + FG P + Sbjct: 204 KALGQPLAFG-GDAVKPNAPGQLVSHYAPGAAVRLDATEKRPGEIYLGFGPGPEAD---- 258 Query: 264 IISLNLSKTGKLKEAAFNLFNYMKIADDS----GASSIAFSSIPNHGLGIAINNRLERAA 319 L LS EAA LF +++AD GA++IA + IP GLG AIN+RL RAA Sbjct: 259 ---LTLSVRADPVEAATRLFAMLRVADKLATARGAATIAIAPIPETGLGRAINDRLRRAA 315 Query: 320 APRN 323 APR Sbjct: 316 APRG 319 >gi|124009997|ref|ZP_01694660.1| translation factor SUA5 [Microscilla marina ATCC 23134] gi|123983955|gb|EAY24343.1| translation factor SUA5 [Microscilla marina ATCC 23134] Length = 320 Score = 318 bits (816), Expect = 6e-85, Method: Composition-based stats. Identities = 114/314 (36%), Positives = 170/314 (54%), Gaps = 11/314 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +A L G +AIPTETVYGLA ++ + A+ R++E K RP +PLI H I V+ Sbjct: 9 LTQASILLTQGKLVAIPTETVYGLAANAFDKKAVTRIFEAKNRPTFDPLIVHTHSIEQVQ 68 Query: 72 KHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + + + LAK FWPG LT++L+ I L TA L T R+P T +L++ Sbjct: 69 QFTKNIPEKAKKLAKQFWPGSLTILLE--KNDLIPDLVTAGLSTVAVRIPNHPLTLELLK 126 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 PLA PSAN G IS T H+ + + ++ IIDGG ++G+ESTIV V+ + Sbjct: 127 QLDFPLAAPSANPFGYISPTTAGHV-EAQLKNKVSYIIDGGPCQVGIESTIVEVKNNQT- 184 Query: 190 RILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV-NPREA 248 I R GG+ +E ++ A ++E +S P++ GMLKSHYAP+ ++ + I P+ Sbjct: 185 TIYRLGGISVENIEAATG-KVEEVRHSSSNPKASGMLKSHYAPQKKMIIGDIAALLPQYP 243 Query: 249 LIRFGNVPIKNIENAII---SLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305 + G + + + + LS G+L +AA LF M+ D+ I +P Sbjct: 244 CDKVGILSFRKTYEQVPKNQQVVLSAEGELAKAAQGLFAGMRYLDNQPVEIILAELMPEK 303 Query: 306 GLGIAINNRLERAA 319 GLG AIN+R+ RAA Sbjct: 304 GLGRAINDRIRRAA 317 >gi|227510128|ref|ZP_03940177.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190333|gb|EEI70400.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 340 Score = 318 bits (816), Expect = 7e-85, Method: Composition-based stats. Identities = 102/337 (30%), Positives = 166/337 (49%), Gaps = 21/337 (6%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ + I + + +A F+ G ++ PTETVYGL D+ N TA++++Y K RP+ NPL Sbjct: 1 MKTL-ILKKDQIEQAANFIKEGELVSFPTETVYGLGADATNETAVKKVYAAKGRPSDNPL 59 Query: 61 ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I VS + MV K+ + + L K FWPG LT++ L + T L TA FR Sbjct: 60 IVTVSSVEMVTKYVDHISDDAQKLIKAFWPGSLTMIFKLKPNV-LSKAVTGGLNTAAFRF 118 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T LI G P+ PSAN SG+ S T +H+ + +I I+D G + +G+ES Sbjct: 119 PQNQLTLDLITKAGVPIVGPSANTSGKPSPTTAQHVY-HDLNGKIAAILDDGPTTVGVES 177 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAIS---VELEYCVDETSTPQSPGMLKSHYAPRSQ 235 T++++ K ILRPG + + ++ I ++ + V TP++PGM HYAP +Q Sbjct: 178 TVLDMSV-KTPSILRPGAVTKDDIEAVIHQNVIDELHHVGTDQTPKAPGMKYKHYAPNAQ 236 Query: 236 VRLRAIHVNP----REALIRFGNVPIKNIENAIISLNLSKTGKL-------KEAAFNLFN 284 V + + + V + +N I S++ ++ + A+ +LF Sbjct: 237 VYIVDPEDSWLDVAKWIESHPQPVGVMAFDNVISSIDWPMNAQIVTLGSNSRTASRDLFA 296 Query: 285 YMKIADDS-GASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ D+ I + G+ A NRL ++A Sbjct: 297 DLREFDNHPEIKIIFTQGLKPSGIAEAYMNRLNKSAG 333 >gi|307244020|ref|ZP_07526139.1| Sua5/YciO/YrdC/YwlC family protein [Peptostreptococcus stomatis DSM 17678] gi|306492544|gb|EFM64578.1| Sua5/YciO/YrdC/YwlC family protein [Peptostreptococcus stomatis DSM 17678] Length = 345 Score = 318 bits (816), Expect = 8e-85, Method: Composition-based stats. Identities = 99/335 (29%), Positives = 158/335 (47%), Gaps = 25/335 (7%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + + L +G + PTETVYGL ++ + A ++Y+ K RP+ NPL+ H++D Sbjct: 14 DKDLIAVFASMLASGKTVIFPTETVYGLGANALDEEAAAKIYQAKGRPSDNPLLVHIADK 73 Query: 68 SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125 V +D + L FWPGPLT+V I ++ L T R+P + Sbjct: 74 EDVYGLVENIDDRAKLLMDKFWPGPLTIVF--KKKDIIPDRTSGGLDTVAIRMPSDQVAR 131 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LI G P+A PSAN SG+ S T +HI+ + + I+ GG G+ESTIV++ Sbjct: 132 DLIRQAGVPIAAPSANISGRPSPTKPEHIIRD-MDGRVDGILVGGPCNYGVESTIVDLSG 190 Query: 186 EKKVRILRPGGLEIETLKRAIS-VELEYCV---DETSTPQSPGMLKSHYAPRSQVRLRAI 241 + +LRPG + +E L + V+L+ + D+ ++PGM HY+P++QV + Sbjct: 191 D-VAMVLRPGSITLEMLGEVLGQVDLDPSLKNKDDNIRAKAPGMKYKHYSPQAQVYIVRA 249 Query: 242 HVNPREALIRFGNVPIKNIENAIISLNLSKTGKL--------------KEAAFNLFNYMK 287 A R + + N + + + L+++ E A NLF+ + Sbjct: 250 GDQEDFA-RRVDELCLDNAKKGLKTGVLTRSSDQHPYQAQVFDLGESDAEVAKNLFDSLI 308 Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 D GLG+AI NRL++AA R Sbjct: 309 SLDRESIDIAYVPYFEEKGLGVAIMNRLKKAAGYR 343 >gi|296418740|ref|XP_002838983.1| hypothetical protein [Tuber melanosporum Mel28] gi|295634977|emb|CAZ83174.1| unnamed protein product [Tuber melanosporum] Length = 435 Score = 318 bits (815), Expect = 8e-85, Method: Composition-based stats. Identities = 112/370 (30%), Positives = 164/370 (44%), Gaps = 54/370 (14%) Query: 3 IMSITDS---NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 + I D AL+ A + L G +A PTETVYGL D+ + + +Y K+RP+ NP Sbjct: 61 TLEIDDPATLEALKDAADLLRQGKCVAFPTETVYGLGADATSTVGVNSIYTAKQRPSDNP 120 Query: 60 LICHVSDISMVKKH-------------------ASVDPLSLHLAKLFWPGPLTLVLDLLS 100 LI HVS + ++ + + L FWPGPLT++L L + Sbjct: 121 LIVHVSSLRQLRGILAPTNPTSTTNGHATNTCGGEIPEVYNALISKFWPGPLTILLPLPT 180 Query: 101 -TTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSS 158 + + TA R+P + L PLA PSAN SG S T+ H+L+ Sbjct: 181 INSPLSASVTAGQPKFAARLPSHPIARALCYLSSLPLAAPSANASGNPSPTSASHVLTD- 239 Query: 159 ICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISV---------E 209 + IPLIIDGG +GLEST+V+ + V +LRPGG+ +E ++ + Sbjct: 240 LWNRIPLIIDGGPCSVGLESTVVDGLRDPPV-VLRPGGISVEAIRELGGIWARTIISKAS 298 Query: 210 LEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALI--------------RFGNV 255 LE D + TP++PGM HY+PR+ V L P + G + Sbjct: 299 LEDAADPSITPEAPGMKYKHYSPRASVVLYEFGTPPLCGKDLVRSPILSAKNLNGKVGIL 358 Query: 256 PIKNIENAIISLNLS-----KTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIA 310 + E+ I L L +E LF ++ DD G I I G+A Sbjct: 359 RTRTWEDGIGELTLGRLKYESNNGGEEIGRRLFAALRELDDEGVDVIHVEGIEEVLEGLA 418 Query: 311 INNRLERAAA 320 + NRL +AA+ Sbjct: 419 VMNRLRKAAS 428 >gi|188587452|ref|YP_001918997.1| Sua5/YciO/YrdC/YwlC family protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179352139|gb|ACB86409.1| Sua5/YciO/YrdC/YwlC family protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 367 Score = 318 bits (815), Expect = 8e-85, Method: Composition-based stats. Identities = 95/354 (26%), Positives = 161/354 (45%), Gaps = 46/354 (12%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D +++A + +A PTETVYGL + +P AI+++++ K RP NP+I H+ + Sbjct: 13 DKTIIKQAAGIVRQNGLVAFPTETVYGLGGNGLSPAAIQKIFQAKNRPLDNPVILHLHSV 72 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + V+ LA+ FWPGPLT+++ + ++ L T R+P Sbjct: 73 NQVETLGFPPEEFFFLAEKFWPGPLTMIIP--KKNIVPREASGGLDTVAVRMPDHNVALA 130 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LI+ P+A PSAN SG+ S T H+ + I +IIDGG + +GLEST++++ E Sbjct: 131 LIQEAQVPMAAPSANLSGRPSPTTAAHV-ELDLSGRIDMIIDGGTTGVGLESTVIDL-SE 188 Query: 187 KKVRILRPGGLEIETLKRAISV----------------------ELEYCVDETSTPQSPG 224 K ++LRPGG+ E L A+ E + ++ +SPG Sbjct: 189 KPYQVLRPGGITAEQLASALDYCQDTFLYTGSEEDYYAEGNQSSCDEMITKDKNSIKSPG 248 Query: 225 MLKSHYAPRSQVRLRAI------------HVNPREALIRFGNVPI-------KNIENAII 265 + HY+P+ ++ L + + R G + N+ Sbjct: 249 VKYRHYSPQGELYLVEGSGHKLLHKMYEYANDFSKQGYRIGILLTNELLEEDGNLHKFCY 308 Query: 266 SLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 L +L E A +L++ ++ D G I + G+G+A+ NRL +A+ Sbjct: 309 VRRLGNEDQLTEVAHSLYDALREMDQQGIEIILCRTFSPKGIGVALMNRLLKAS 362 >gi|210623302|ref|ZP_03293719.1| hypothetical protein CLOHIR_01669 [Clostridium hiranonis DSM 13275] gi|210153703|gb|EEA84709.1| hypothetical protein CLOHIR_01669 [Clostridium hiranonis DSM 13275] Length = 348 Score = 318 bits (815), Expect = 1e-84, Method: Composition-based stats. Identities = 101/338 (29%), Positives = 163/338 (48%), Gaps = 29/338 (8%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 D + +R+ E + G + PTETVYGL ++ + A++++Y K RP+ NPLI H++D Sbjct: 13 IDIDIIREMAEKIRNGETVIFPTETVYGLGANAMDEDAVKKIYLAKGRPSDNPLIVHIAD 72 Query: 67 ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 I V K A V + + FWPGPLT++L + +++ L T R+P Sbjct: 73 IEEVDKIALEVGEKAKKAMENFWPGPLTIILKKKEI--VPNVTSGGLSTVAIRMPSNKIA 130 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 LI +A PSAN SG+ S T +H++ + + II GG GLEST+V+ Sbjct: 131 NALIRESKTQIAAPSANISGRPSPTKAEHVVKE-MSGRVSGIIMGGDCDFGLESTVVDFS 189 Query: 185 CEKKVRILRPGGLEIETLKRAIS-VELEYCVDETS---TPQSPGMLKSHYAPRSQVRL-- 238 +K + ILRPG + E L+ + V ++ + + ++PGM HY+P +QV + Sbjct: 190 DDKPM-ILRPGSITKEMLEEVLGEVSIDPSLSKKEDNIKAKAPGMKYKHYSPNAQVYIVK 248 Query: 239 --------------RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFN 284 R H ++ I + + E ++L K E A NLF+ Sbjct: 249 GGENNVITKMNELSRKNHAENKKTGIMCMSKDVDKFE-CDYVVDLGK--DYNEVAANLFD 305 Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 + D++ + + G+G AI NRL ++AA R Sbjct: 306 ALIKMDEAKMDIVYSVCFESCGVGQAIMNRLLKSAAYR 343 >gi|268317144|ref|YP_003290863.1| Sua5/YciO/YrdC/YwlC family protein [Rhodothermus marinus DSM 4252] gi|262334678|gb|ACY48475.1| Sua5/YciO/YrdC/YwlC family protein [Rhodothermus marinus DSM 4252] Length = 317 Score = 318 bits (815), Expect = 1e-84, Method: Composition-based stats. Identities = 101/318 (31%), Positives = 157/318 (49%), Gaps = 15/318 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A + G +A PTETVYGL D+ NP A+R+++E K RP NPLI H+ + Sbjct: 9 TTDVHEAAALIRRGELVAFPTETVYGLGADAFNPEAVRKIFEAKGRPLDNPLIVHIVHLD 68 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126 + V + + F+PGPLTLVL D+ TA L T R+P + Sbjct: 69 QLAHLVRDVPEAARRFMERFFPGPLTLVLPRHP--DVPDEVTAGLPTVGVRMPRHPVAQA 126 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 +E G P+A PSANRSG+ S T + + + + I I+ G S +GLEST+V+ Sbjct: 127 FLEACGTPVAAPSANRSGRPSPTRWEAVY-ADLNGRIACILQGDRSDMGLESTVVDCTGS 185 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL----RAIH 242 + V +LR G + +E L+ + + + +SPG HYAP+++V L Sbjct: 186 EPV-VLRAGAVPLEALREVVPETRLVGDETSLKARSPGTRYRHYAPQARVVLVDHPDEAV 244 Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302 +PR A I A ++ A+ LF++ + D + I + Sbjct: 245 PDPRHAYIGLTPPAHPEAFGACCVCP-----DVETYAYELFDFFRRCDAQNCTRIYAQRV 299 Query: 303 PNHGLGIAINNRLERAAA 320 P+ GLG+A+ +RLERAA+ Sbjct: 300 PHTGLGLALMDRLERAAS 317 >gi|170750228|ref|YP_001756488.1| Sua5/YciO/YrdC/YwlC family protein [Methylobacterium radiotolerans JCM 2831] gi|170656750|gb|ACB25805.1| Sua5/YciO/YrdC/YwlC family protein [Methylobacterium radiotolerans JCM 2831] Length = 332 Score = 317 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 127/303 (41%), Positives = 169/303 (55%), Gaps = 4/303 (1%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81 G +A PTETVYGL D+ +P A+ ++ K RP NPLI H+ D D + Sbjct: 32 GRLVAFPTETVYGLGADATDPAAVTGIFAAKARPRFNPLISHLPDAVAALAEGVFDAPAR 91 Query: 82 HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140 LA+ FWPGPLTLV+ + T + L A L + RVP + L+ G P+A PSA Sbjct: 92 RLAEAFWPGPLTLVVPAHTGTRVCDLVRAGLPSLALRVPAHPLARDLLAEVGRPVAAPSA 151 Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200 N SG++S T H+L + I ++DGG + +G+EST+V R+LRPGG+ Sbjct: 152 NWSGRVSPTRAAHVL-DDLAGRISAVLDGGDTPVGVESTVVACLG-GPPRLLRPGGITRA 209 Query: 201 TLKRAISVELEYCVDETST-PQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKN 259 L+ + ++ + P PGML SHYAPR++VRL A+ V P EA + FG P Sbjct: 210 ALRDVLGLDPAAPEAADADRPAGPGMLASHYAPRARVRLDAVRVEPGEAALLFGPRPPAG 269 Query: 260 IENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 E A SLNLS G EAA LF ++ D SGA +IA + IP GLG AI +RL RAA Sbjct: 270 HETARASLNLSPAGDPAEAAARLFGALRDLDASGAETIAVAPIPEDGLGEAIRDRLARAA 329 Query: 320 APR 322 APR Sbjct: 330 APR 332 >gi|154500228|ref|ZP_02038266.1| hypothetical protein BACCAP_03892 [Bacteroides capillosus ATCC 29799] gi|150270960|gb|EDM98234.1| hypothetical protein BACCAP_03892 [Bacteroides capillosus ATCC 29799] Length = 341 Score = 317 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 99/328 (30%), Positives = 162/328 (49%), Gaps = 20/328 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +++A E L G + IPTETVYGL +P A+ ++ K RP NPLI HV Sbjct: 8 AQDIQEAAEILKRGGLLGIPTETVYGLGASGLDPEAVAHIFAAKGRPQDNPLILHVPSAD 67 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 ++++ + + LA+ FWPGP+T++L + TA L T R P T+ Sbjct: 68 WLERYCEDIPDAAYALAERFWPGPMTMILRRKPI--VPDAVTAGLDTVGMRCPDHGVTRA 125 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 +I G P+A PS N SG+ S T+ +L + +I I+DGG +G+ESTI+++ Sbjct: 126 IIAAAGVPVAAPSGNTSGRPSPTSAADML-EDMDGKIDGIVDGGPCTVGVESTIIDLTL- 183 Query: 187 KKVRILRPGGLEIETLKRAIS-VELEYCV----DETSTPQSPGMLKSHYAPRSQVRLRAI 241 R+LRPGG+ +E L+ A+ V+++ V + P++PGM HYAP + V + Sbjct: 184 TPPRLLRPGGVTLEQLRDALGEVDVDQAVTRLMGKDEHPRAPGMKYRHYAPEAPVTVVKG 243 Query: 242 HVNPREALIRF------GNVPIKNIE---NAIISLNLSKTGKLKEAAFNLFNYMKIADDS 292 + A IR G + + + +E A +F+ ++ D + Sbjct: 244 PADKTAAYIRDHLGPKSGVICFDEFAGDFSGYPVETMGPAADKEEQARRVFDALRYFDST 303 Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAA 320 I + G+G+A++NRL +AA Sbjct: 304 DVEEIWSQCPDDGGIGLAVSNRLNKAAG 331 >gi|191638152|ref|YP_001987318.1| Translation factor SUA5 [Lactobacillus casei BL23] gi|239631746|ref|ZP_04674777.1| translation factor SUA5 [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066211|ref|YP_003788234.1| putative translation factor [Lactobacillus casei str. Zhang] gi|190712454|emb|CAQ66460.1| Translation factor SUA5 [Lactobacillus casei BL23] gi|239526211|gb|EEQ65212.1| translation factor SUA5 [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300438618|gb|ADK18384.1| Putative translation factor (SUA5) [Lactobacillus casei str. Zhang] gi|327382182|gb|AEA53658.1| Putative translation factor (SUA5) [Lactobacillus casei LC2W] gi|327385379|gb|AEA56853.1| Putative translation factor (SUA5) [Lactobacillus casei BD-II] Length = 333 Score = 317 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 104/324 (32%), Positives = 164/324 (50%), Gaps = 15/324 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A L G +A PTETVYGL D+ N TA+ ++Y K RP+ NPLI V+D Sbjct: 7 ESDIPEAAAALKRGELVAFPTETVYGLGADATNVTAVGKVYAAKGRPSDNPLIVTVADAE 66 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 MV ++A++ PL+ L + FWPGPLT++L++L + T L+TA FR P T+KL Sbjct: 67 MVGQYATITPLAAKLMEAFWPGPLTIILNILPGR-LSMKVTGGLQTAAFRNPDNALTRKL 125 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I T G P+ PSAN SG+ S T H+L + +I ++D G +++G+ES I+++ Sbjct: 126 IATAGVPIVGPSANTSGKPSPTTADHVL-HDLDGKIAGVLDDGPTQVGVESAIIDLTVTP 184 Query: 188 KVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAP-------RSQVRL 238 ILRPG + + L+ I + V + P++PGM HYAP + Sbjct: 185 PA-ILRPGAIGPDELEPLIGHVDTAAHHVGQNEAPKAPGMKYKHYAPAAQVVVVDDPAQF 243 Query: 239 RAIHVNPREALIRFGNVPIKNIENAIISL-NLSKTGKLKEAAFNLFNYMKIAD-DSGASS 296 A ++ FG + I ++ + S ++ AA LF ++ D + Sbjct: 244 SAAVAWAKQTGQVFGLLATDAILAQYPTIPSYSLGKDVQSAAHALFAGLRWFDLHPDVTL 303 Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320 + + L A NRL ++A Sbjct: 304 VLAQAFSKTELSAAYMNRLLKSAG 327 >gi|170017814|ref|YP_001728733.1| putative translation factor (SUA5) [Leuconostoc citreum KM20] gi|169804671|gb|ACA83289.1| Putative translation factor (SUA5) [Leuconostoc citreum KM20] Length = 336 Score = 317 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 106/338 (31%), Positives = 170/338 (50%), Gaps = 17/338 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M +T+ + +++A L AG +A PTETVYGL D+ + A+++++ K RPA NPL Sbjct: 2 MNTERLTNQD-IQRAGVLLKAGEVVAFPTETVYGLGADATHEEAVQKVFVAKGRPADNPL 60 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 I V+D + SV + L FWPG LT++L + + + T L TA FR+P Sbjct: 61 IMTVADAEQLTNFVSVSEAAKALIDAFWPGSLTIILPIKPG-QVSMMVTGGLDTAAFRLP 119 Query: 121 CGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 T+ +I G P+ PSAN SG+ S T +H+ + +I I+D G +++G+EST Sbjct: 120 DNETTRAIIREAGVPIVGPSANTSGKPSPTTAQHVW-HDMQGKIAAIVDDGPTQVGVEST 178 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-----ETSTPQSPGMLKSHYAPRS 234 +V++ + ILRPG + + L+ + + + + TP++PGM HYAP Sbjct: 179 VVDMAADVP-TILRPGAVTQQQLEDVLGIHVLDATSTMSVADDVTPKAPGMKYRHYAPDK 237 Query: 235 QV----RLRAIHVNPREALIRFGNVPIKNIENAIISL--NLSKTGKLKEAAFNLFNYMKI 288 QV RL A+ + A + ++ + L S L+ A LF ++ Sbjct: 238 QVVMFDRLDALALKVSLAPTDVVMAQEETLQRMALPLAQTWSLGTTLENATEQLFAGLRY 297 Query: 289 ADD-SGASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325 DD + +I +P GLG A NNRL +A+ + Sbjct: 298 YDDVAHVKTIYVEKMPPIGLGKAFNNRLGKASGNQEYQ 335 >gi|167750774|ref|ZP_02422901.1| hypothetical protein EUBSIR_01752 [Eubacterium siraeum DSM 15702] gi|167656209|gb|EDS00339.1| hypothetical protein EUBSIR_01752 [Eubacterium siraeum DSM 15702] Length = 337 Score = 317 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 115/338 (34%), Positives = 165/338 (48%), Gaps = 17/338 (5%) Query: 1 MQI-MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 M+ + L +A E + G +AIPTETVYGLA D+ NP A ++++ K RP NP Sbjct: 1 MKTEIKKPSYEVLCEAAELIKKGEVVAIPTETVYGLAADAYNPDACAKIFKAKGRPQDNP 60 Query: 60 LICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 LI H+ D+ M+K + PL+L LA+ FW G LT++ + ++ L T R Sbjct: 61 LIIHICDLDMLKNSVKEIPPLALTLAEHFWSGSLTMIFP--KKDIVPDTTSGGLDTVAVR 118 Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 +P T LI+ G PLA PSAN SG S T +H+ + + IPLIIDGG K G+E Sbjct: 119 MPDNEDTLNLIKMCGVPLAAPSANLSGSPSPTTAQHVY-ADMNGRIPLIIDGGECKNGVE 177 Query: 178 STIVNVQCEKK-VRILRPGGLEIETLKRAISVELEYCV----DETSTPQSPGMLKSHYAP 232 ST++ +++LRPG + E L R E + V DE SPG+ HY+P Sbjct: 178 STVICFTDGGTGIKVLRPGVITAEMLSRFAKTETDKNVFAKPDENEKVISPGVKYKHYSP 237 Query: 233 RSQVRLRAIHVNPREA------LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYM 286 R+ + + + + A I E I +S +E A NLF + Sbjct: 238 RADITIIETDSDEKLAEFLNSKNDGGTYGVIFGSEKGIEVPTISYGSTAQEQAHNLFAVL 297 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQ 324 + D+ GA G+G A+ NRL RAAA + Sbjct: 298 RKTDELGAKRAYVRCPEKTGVGTAVYNRLLRAAAFKTI 335 >gi|23012172|ref|ZP_00052324.1| COG0009: Putative translation factor (SUA5) [Magnetospirillum magnetotacticum MS-1] Length = 329 Score = 317 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 119/296 (40%), Positives = 166/296 (56%), Gaps = 3/296 (1%) Query: 28 PTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLF 87 PTETVYGL D+ +P A+ +Y K RP NPLI HV+ D + LA F Sbjct: 36 PTETVYGLGADATDPEAVAAIYAAKGRPHFNPLIAHVATHEAALAEGVFDAAAQLLATAF 95 Query: 88 WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQI 146 WPGPLTLV+ + + L+ A L + RVP + L+ G P+A PSANRSG++ Sbjct: 96 WPGPLTLVVPVSPGGSVCELARAGLDSVALRVPAHGLARDLLARVGRPVAAPSANRSGRV 155 Query: 147 SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAI 206 S T+ H+L + + I ++DGG +G+ES++V R+LRPGG+ E + + Sbjct: 156 SPTSADHVL-ADLDGRIDAVLDGGECPVGVESSVVACLGGTP-RLLRPGGVTREAIAALL 213 Query: 207 SVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAIIS 266 + D + P PG+L SHYAPR+ VRL A + P EA + FG + ++ A Sbjct: 214 GFDPAAAGDPGAQPVGPGLLASHYAPRAGVRLDATAIAPGEAALLFGAFRPEGLKRAAAV 273 Query: 267 LNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 +LS+ G EAA LF ++ D SGA+ IA + +P GLG AIN+RL RAAAPR Sbjct: 274 ESLSERGDPAEAAARLFGALRRLDASGAAVIAVAPVPGEGLGEAINDRLRRAAAPR 329 >gi|313905026|ref|ZP_07838396.1| Sua5/YciO/YrdC/YwlC family protein [Eubacterium cellulosolvens 6] gi|313470096|gb|EFR65428.1| Sua5/YciO/YrdC/YwlC family protein [Eubacterium cellulosolvens 6] Length = 355 Score = 317 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 112/348 (32%), Positives = 168/348 (48%), Gaps = 28/348 (8%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 D AL+KA E L G +A PTETVYGL ++ +P A RR+Y K RP+ NPLI H+ Sbjct: 12 DCLDMEALKKAGEILAGGGLVAFPTETVYGLGGNALDPEASRRIYAAKGRPSDNPLIVHI 71 Query: 65 SDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 +D + S + + LA +WPGPLT++ + + + +T L+T R+P Sbjct: 72 ADWDSLTPIVSRIPEKAKKLADAYWPGPLTMIFE--KSELVPYETTGGLETVAVRLPANK 129 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 ++I G +A PSAN SG+ S T H+ + I +IIDGG IGLESTIV+ Sbjct: 130 VAVEMIRQAGGYVAAPSANTSGRPSPTLASHV-EEDLGDRIDMIIDGGQVNIGLESTIVD 188 Query: 183 VQCEKKVRILRPGGLEIETLKRAIS-VELEYCVDETST---PQSPGMLKSHYAPRSQV-- 236 E V ILRPG L E L+ + V ++ + +T P++PGM HYAP++ + Sbjct: 189 FTEEIPV-ILRPGFLNKEMLEEVLGEVRIDPGIMAENTHIRPKAPGMRYKHYAPKADLAI 247 Query: 237 ----------RLRAIHVNPREALIRFGNVPIKNIENAI---ISLNLSKTGKLKEAAFNLF 283 ++R + R G + + + I + + A +L+ Sbjct: 248 VEGAPAAVFSKIRELVREGIAKEQRVGVICTEESRSEYPEGIVRCIGSRADDRTIARHLY 307 Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP---RNQSQRI 328 ++ D G +I S +G AI NRL +AA R S+ I Sbjct: 308 EILRDFDADGVDAIYSESFETPRMGQAIMNRLIKAAGHEVIRAGSEDI 355 >gi|160947260|ref|ZP_02094427.1| hypothetical protein PEPMIC_01193 [Parvimonas micra ATCC 33270] gi|158446394|gb|EDP23389.1| hypothetical protein PEPMIC_01193 [Parvimonas micra ATCC 33270] Length = 341 Score = 317 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 101/342 (29%), Positives = 166/342 (48%), Gaps = 31/342 (9%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +I+ T N + ++ + + +AIPTETVYGL + + A+ ++++ K RP NPLI Sbjct: 3 EILKPTREN-IERSAKLILNDKIVAIPTETVYGLGANGLSDIAVSKIFKAKNRPQDNPLI 61 Query: 62 CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 H+SD M++ ++ FWPGPLT+V+ I + L T R+P Sbjct: 62 LHISDYDMMENLVYELNDEIKEFLNHFWPGPLTVVM--KKKDIIPDAISCGLDTVAIRMP 119 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + I+ G P+A PSAN SG+ S T + + + + +I +I+DGG+ IG+EST Sbjct: 120 NNEIARSFIKQCGVPIAAPSANISGKPSPTTAEDVFTD-MNGKISVILDGGLCNIGIEST 178 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-----ETSTPQSPGMLKSHYAPRS 234 ++++ K ILRPG E + E E +D E + P+SPG HYAP + Sbjct: 179 VLDLTK-KPYTILRPGFYTKED---FLKYEDEILIDDAIVTENTIPKSPGQKYKHYAPNA 234 Query: 235 QVRLRAIHVNPR-----------EALIRFG----NVPIKNIENAIISLNLSKTGKLKEAA 279 +V + + + ++ G + N+E+ I L+L LKE + Sbjct: 235 KVVVISTKDRKKSSMEIEKIIKENKGLKIGIFKFDETFLNVESENI-LSLGSVFDLKEMS 293 Query: 280 FNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 LF ++ D+ I GLG +I NRL+++A+ Sbjct: 294 KILFKGLREFDEKNVDLIVVEGCDEKGLGFSIMNRLKKSASG 335 >gi|227535364|ref|ZP_03965413.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227186960|gb|EEI67027.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 333 Score = 317 bits (813), Expect = 1e-84, Method: Composition-based stats. Identities = 104/324 (32%), Positives = 164/324 (50%), Gaps = 15/324 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A L G +A PTETVYGL D+ N TA+ ++Y K RP+ NPLI V+D Sbjct: 7 ESDIPEAAAALKRGELVAFPTETVYGLGADATNVTAVGKVYAAKGRPSDNPLIVTVADAD 66 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 MV ++A++ PL+ L + FWPGPLT++L++L + T L+TA FR P T+KL Sbjct: 67 MVGQYATITPLAAKLMEAFWPGPLTIILNILPGR-LSMKVTGGLQTAAFRNPDNALTRKL 125 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I T G P+ PSAN SG+ S T H+L + +I ++D G +++G+ES I+++ Sbjct: 126 IATAGVPIVGPSANTSGKPSPTTADHVL-HDLDGKIAGVLDDGPTQVGVESAIIDLTVTP 184 Query: 188 KVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAP-------RSQVRL 238 ILRPG + + L+ I + V + P++PGM HYAP + Sbjct: 185 PA-ILRPGAIGPDELEPLIGHVDTAAHHVGQNEAPKAPGMKYKHYAPAAQVVVVDDPAQF 243 Query: 239 RAIHVNPREALIRFGNVPIKNIENAIISL-NLSKTGKLKEAAFNLFNYMKIAD-DSGASS 296 A ++ FG + I ++ + S ++ AA LF ++ D + Sbjct: 244 SAAVAWAKQTGQVFGLLATDAILAQYPTIPSYSLGKDVQSAAHALFAGLRWFDLHPDVTL 303 Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320 + + L A NRL ++A Sbjct: 304 VLAQAFSKTELSAAYMNRLLKSAG 327 >gi|284036313|ref|YP_003386243.1| Sua5/YciO/YrdC/YwlC family protein [Spirosoma linguale DSM 74] gi|283815606|gb|ADB37444.1| Sua5/YciO/YrdC/YwlC family protein [Spirosoma linguale DSM 74] Length = 324 Score = 317 bits (813), Expect = 1e-84, Method: Composition-based stats. Identities = 121/313 (38%), Positives = 174/313 (55%), Gaps = 11/313 (3%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 KA EFL++G + IPTETVYGLA ++ + AI R++++K RP+ +PLI H I V + Sbjct: 10 KAKEFLESGNVVGIPTETVYGLAGNALDTNAILRIFQVKNRPSFDPLIVHTDSIDKVSQF 69 Query: 74 ASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY 131 + P + LA+ FWPGPLTL+L + I L T+ L + R+P T L+ + Sbjct: 70 ITDIPEPARKLAEAFWPGPLTLLLP--KQSLIPDLVTSGLPSVAVRIPNHPLTLDLLRSL 127 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 PLA PSAN G IS T +H+ + + ++P I+DGG + +G+ESTIV + + Sbjct: 128 DFPLAAPSANPFGYISPTTAQHV-ADQLGDQVPYILDGGPAGVGIESTIVGFENNLP-TV 185 Query: 192 LRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIR 251 R GG+ +E ++ I + TS PQ+PGML SHYAPR + L + +P+ R Sbjct: 186 FRLGGMALEQIEAVIG-SVSVRTHSTSNPQAPGMLSSHYAPRKPLMLLSPGESPQPGE-R 243 Query: 252 FGNVPIKNIENAIISLN---LSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLG 308 G + + I N LS TG L EAA NLF ++ D I +PN GLG Sbjct: 244 IGALAFREPFGGIPISNQRVLSPTGDLNEAAKNLFACLRELDTLSVDLIYAEPLPNTGLG 303 Query: 309 IAINNRLERAAAP 321 A+N+RL RA+ P Sbjct: 304 SAMNDRLRRASVP 316 >gi|227431144|ref|ZP_03913200.1| Sua5/YciO/YrdC/YwlC family protein [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227353096|gb|EEJ43266.1| Sua5/YciO/YrdC/YwlC family protein [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 337 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 104/330 (31%), Positives = 167/330 (50%), Gaps = 16/330 (4%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 T N + +A + G +A PTETVYGL D+ N +AI++++ K RPA NPLI V+D Sbjct: 8 TTKNDIEEASRLIQNGEVVAFPTETVYGLGADATNESAIKKVFVAKGRPADNPLIMTVAD 67 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126 + + + ++ + L FWPG LT++L + ++ L T L+T FR+P + Sbjct: 68 AAQLDEFVTISDQARGLMDHFWPGSLTIILPIKPG-NVSMLVTGGLQTVAFRLPANDAAR 126 Query: 127 -LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LI G P+ PSAN SG+ S T +H+ + +I I+D G +++G+EST++++ Sbjct: 127 TLIRAAGVPIVGPSANTSGKPSPTTAQHVW-HDMQNKIAGIVDDGPTQVGVESTVIDMSI 185 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETS-----TPQSPGMLKSHYAPRSQV---- 236 + ILRPG + L+ + +++ S TP++PGM HYAP V Sbjct: 186 STPI-ILRPGAVTQPQLEEVLQMKVIDATSTESVASNVTPKAPGMKYRHYAPDKNVVMFD 244 Query: 237 RLRAIHVNPREALIRFGNVPIKNIENAIISLN--LSKTGKLKEAAFNLFNYMKIA-DDSG 293 L A+ + A IE ++ + S L+ A LF ++ DDS Sbjct: 245 ELDALELKQVLAPNDVVMAKDDMIEKMALTNHQAWSLGNTLETATEQLFAGLRFYDDDSQ 304 Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAAPRN 323 ++I +P G+G A NNRL +AA + Sbjct: 305 ITTIYVQKMPPIGIGKAFNNRLGKAAGNQE 334 >gi|220927715|ref|YP_002504624.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium cellulolyticum H10] gi|219998043|gb|ACL74644.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium cellulolyticum H10] Length = 359 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 106/347 (30%), Positives = 176/347 (50%), Gaps = 31/347 (8%) Query: 2 QIMSI----TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 Q++ I + NAL+ A E L G+ +A PTETVYGL ++ + A+ ++++ K RP+ Sbjct: 4 QVIKIDAENINENALKPAAEALKQGMTVAFPTETVYGLGANALDGIAVSKIFKAKGRPSD 63 Query: 58 NPLICHVSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 NPLI H++D V + S P ++ L WPGPLTLV+ ++ I TA L T Sbjct: 64 NPLIVHIADREKVSELTSFIPDKAVALMDKLWPGPLTLVM--KKSSVIPKEITAGLDTVG 121 Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R+P +LI+ G P+A PSAN SG+ S T +H+L + +I +I+D G S++G Sbjct: 122 IRMPEHPVALELIKLAGIPVAAPSANVSGKPSPTAAQHVL-DDLDGKIEMIVDAGSSRVG 180 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVE-----LEYCVDETSTPQSPGMLKSHY 230 LEST+++V + V +LRPGG+ ++ I + V + P+SPGM HY Sbjct: 181 LESTVLDVSSDPPV-LLRPGGVTPCQIEEIIGHIEIDKTIMNKVTADNVPKSPGMKYKHY 239 Query: 231 APRSQVRLRAIHVNPREALIRFGNVPIKNIENAII----------------SLNLSKTGK 274 +P++ V + ++A + E + ++++ Sbjct: 240 SPKAHVIIVESSDINKQAEVMCYLAEKYKKEGKKVGVCATDQTFDKYCLYDTISMGDRNH 299 Query: 275 LKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 + A +LF+ + D A I ++ +G+G+AI NR+ +AA Sbjct: 300 PETIASSLFSIFREFDGRRADIILAEAVDQNGVGLAIMNRMVKAAGY 346 >gi|255658857|ref|ZP_05404266.1| Sua5/YciO/YrdC/YwlC family protein [Mitsuokella multacida DSM 20544] gi|260849260|gb|EEX69267.1| Sua5/YciO/YrdC/YwlC family protein [Mitsuokella multacida DSM 20544] Length = 352 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 114/346 (32%), Positives = 165/346 (47%), Gaps = 31/346 (8%) Query: 2 QIMSITDSNA----LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 +I++ITD A L +A + L G +A PTETVYGL + + A R+YE K RP+ Sbjct: 4 EIITITDVKAQREELARAGKVLRGGGLVAFPTETVYGLGANGLDAAACARIYEAKGRPSD 63 Query: 58 NPLICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 NPLI HVSD +MV+ A V P++ L F PGP+TL+L + + T L T Sbjct: 64 NPLILHVSDRAMVEMIAAEVTPMAEKLLAAFMPGPITLILRRKAI--VPDRITGGLDTVG 121 Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R+P + +I G P+A PSAN SG+ S T +L + IPLI+DGG G Sbjct: 122 IRMPEHPVARAMIRAAGVPIAAPSANISGRPSPTTAASVLRD-MDGRIPLILDGGPCHFG 180 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPR 233 +ESTIV+ V ILRPG + E L + V + P++PGM HYAP+ Sbjct: 181 VESTIVDCTGPVAV-ILRPGAITREMLTEVLGGCKLDPALVGADTVPRAPGMKYKHYAPK 239 Query: 234 SQVRLRAIHVNPREALIR------------FGNVPIKNIENAIISL-------NLSKTGK 274 + + L A R G + + ++ L + G Sbjct: 240 APLTLLEGDAAKMAAAFRRQVRRLQGEGHTVGVLASHEVCESLQDLVPEELLKDYGPQGD 299 Query: 275 LKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 L A +++ + +D+ A + GLG+AI NRL +A+A Sbjct: 300 LLAIAAHIYEELIAFNDTQADVLLGEGTTEKGLGLAIMNRLHKASA 345 >gi|307595866|ref|YP_003902183.1| Sua5/YciO/YrdC/YwlC family protein [Vulcanisaeta distributa DSM 14429] gi|307551067|gb|ADN51132.1| Sua5/YciO/YrdC/YwlC family protein [Vulcanisaeta distributa DSM 14429] Length = 375 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 99/343 (28%), Positives = 162/343 (47%), Gaps = 33/343 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D++ +++A +++ G +A PTETVYGL D+ N A ++++ K RP NPLI H+SD+ Sbjct: 28 DNSIIKEASDYIKNGYLVAFPTETVYGLGADTFNGEACLKIFKAKGRPPDNPLIVHISDM 87 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + + + A + + + + WPGPLTL+L + D+ T T R P Sbjct: 88 NELDRVAIDIPEIVFPVIRKAWPGPLTLILP--KSPDVPKEVTGGRNTVAVRSPAHPVAL 145 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLI-IDGGISKIGLESTIVNVQ 184 LI++ P+A PSAN+SG+ S T +HI+ + +I +D G + G+ESTIV+V Sbjct: 146 ALIKSSRTPIAAPSANKSGRPSPTLAEHIIEDYANDNVEMILLDAGPTFFGVESTIVDVT 205 Query: 185 CEKKVRILRPGGLEIETLK-----RAISVELEYCVDETSTPQSPGMLKSHYAPRSQVR-- 237 V +LRPG IE L+ + E + E +PGM HYAPR+Q+ Sbjct: 206 RNPPV-LLRPGPFTIEELRSLFNTEIVVPEFARGLGEADVALAPGMKYKHYAPRTQLIVV 264 Query: 238 -----------LRAIHVNPREALIRFGNVPIKNIE---------NAIISLNLSKTGKLKE 277 LR + +N ++ + K N + + + Sbjct: 265 ECEKYDSLIKLLRDVALNYLNKKLKVALLITKETASELMKYPEINELPIIIMGYRENPYT 324 Query: 278 AAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 A +LF+ ++ D I G+G+A+ NRL +A+ Sbjct: 325 IAASLFDSLRSLDRLNVDLGIAEGIEERGIGLAVMNRLRKASG 367 >gi|154251230|ref|YP_001412054.1| Sua5/YciO/YrdC/YwlC family protein [Parvibaculum lavamentivorans DS-1] gi|154155180|gb|ABS62397.1| Sua5/YciO/YrdC/YwlC family protein [Parvibaculum lavamentivorans DS-1] Length = 320 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 122/313 (38%), Positives = 173/313 (55%), Gaps = 15/313 (4%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 E + G +A PTETVYGL D+ + A+ R++E K RP NPLI HV+D + +K+ Sbjct: 17 ELIREGKLVAFPTETVYGLGADASDEKAVARIFEAKGRPRFNPLIVHVADAQVAEKYVVF 76 Query: 77 DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPL 135 + LA+ FWPG LTLVL + + L +A L T RVP + L+E P+ Sbjct: 77 SAEAEALARHFWPGGLTLVLPRRADAKLSLLVSAGLDTVAIRVPAHETAQALLEAAKRPI 136 Query: 136 AIPSANRSGQISITNVKHILSSSICK--EIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 A PSAN SG++S T H++ S+ + +++DGG ++GLES+++ + +LR Sbjct: 137 AAPSANASGKVSPTQAGHVM-ESLGHSDLLAMVLDGGACRLGLESSVIGF-PQGIPTLLR 194 Query: 194 PGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIR 251 PG + E ++ + L + SPG L+SHYAP + +RL A P E L+ Sbjct: 195 PGAVAREEIEAVLGGRLADADAAAGEAGRASPGQLESHYAPGAPLRLDAAEAGPDEVLLG 254 Query: 252 FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSIAFSSIPNHGLGIA 310 FG A S+NLS +G L EAA NLF ++ D +G IA S IP GLG A Sbjct: 255 FGP-------EAKSSMNLSASGDLTEAAANLFAMLRALDATAGGKRIAVSPIPMEGLGEA 307 Query: 311 INNRLERAAAPRN 323 IN+RL+RAAAPR Sbjct: 308 INDRLKRAAAPRG 320 >gi|85709789|ref|ZP_01040854.1| putative translation factor [Erythrobacter sp. NAP1] gi|85688499|gb|EAQ28503.1| putative translation factor [Erythrobacter sp. NAP1] Length = 315 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 127/319 (39%), Positives = 182/319 (57%), Gaps = 14/319 (4%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +I+S D+ + +A + L +G +A+PTETVYGLA + + A+ ++Y K RP NPLI Sbjct: 8 EIISP-DAAGIARAADHLTSGELVAVPTETVYGLAARADSADAVAKIYAAKGRPDFNPLI 66 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 HV DI + A D ++ L + FWPGPLTLVL + S I TA L T R P Sbjct: 67 VHVRDIEQAQGLAEFDDRAIDLVERFWPGPLTLVLPIRSDAAIAKAVTAGLPTIGLRQPS 126 Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 + ++++ G PLA PSANRS IS T +H+ ++S+ PLI+DGG S+ GLESTI Sbjct: 127 HKVMQAVLKSVGVPLAAPSANRSEHISPTRAEHV-TASLGDNAPLILDGGPSQSGLESTI 185 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 V ++ +LRPG + ETL+R + E E E S+ ++PG ++ HY+P +RL A Sbjct: 186 VALRQSGDWNLLRPGPVTKETLERILGPESEI---EGSSIEAPGQMERHYSPGKPMRLSA 242 Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300 V E I FG++ NLS+ G L EAA L+ + +A S +I+ + Sbjct: 243 SEVAQEEFFIGFGSLEGD--------CNLSEAGDLNEAAARLYECLHLAAASDKPAISVA 294 Query: 301 SIPNHGLGIAINNRLERAA 319 IP +G AIN+RL RAA Sbjct: 295 PIPYGEVGRAINDRLRRAA 313 >gi|116494653|ref|YP_806387.1| putative translation factor (SUA5) [Lactobacillus casei ATCC 334] gi|116104803|gb|ABJ69945.1| translation factor SUA5 [Lactobacillus casei ATCC 334] Length = 333 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 104/324 (32%), Positives = 164/324 (50%), Gaps = 15/324 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A L G +A PTETVYGL D+ N TA+ ++Y K RP+ NPLI V+D Sbjct: 7 ESDIPEAAAALKRGELVAFPTETVYGLGADATNVTAVGKVYAAKGRPSDNPLIVTVADAD 66 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 MV ++A++ PL+ L + FWPGPLT++L++L + T L+TA FR P T+KL Sbjct: 67 MVGQYATITPLAAKLMQAFWPGPLTIILNILPGR-LSMKVTGGLQTAAFRNPDNALTRKL 125 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I T G P+ PSAN SG+ S T H+L + +I ++D G +++G+ES I+++ Sbjct: 126 IATAGVPIVGPSANTSGKPSPTTADHVL-HDLDGKIAGVLDDGPTQVGVESAIIDLTVTP 184 Query: 188 KVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAP-------RSQVRL 238 ILRPG + + L+ I + V + P++PGM HYAP + Sbjct: 185 PA-ILRPGAIGPDELEPLIGHVDTAAHHVGQNEAPKAPGMKYKHYAPAAQVVVVDDPAQF 243 Query: 239 RAIHVNPREALIRFGNVPIKNIENAIISL-NLSKTGKLKEAAFNLFNYMKIAD-DSGASS 296 A ++ FG + I ++ + S ++ AA LF ++ D + Sbjct: 244 SAAVAWAKQTGQVFGLLATDAILAQYPTIPSYSLGKNVQSAAHALFAGLRWFDLHPDVTL 303 Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320 + + L A NRL ++A Sbjct: 304 VLAQAFSKTELSAAYMNRLLKSAG 327 >gi|254445927|ref|ZP_05059403.1| Sua5/YciO/YrdC/YwlC family protein, putative [Verrucomicrobiae bacterium DG1235] gi|198260235|gb|EDY84543.1| Sua5/YciO/YrdC/YwlC family protein, putative [Verrucomicrobiae bacterium DG1235] Length = 327 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 119/326 (36%), Positives = 177/326 (54%), Gaps = 13/326 (3%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 I+ T+ N LR+ +FL G + +PTETVYGLA ++ +P A +++E+K+RPA +PLIC Sbjct: 4 ILQPTEEN-LRELRKFLLFGGLVGVPTETVYGLAANAFDPEACAKIFEVKQRPANDPLIC 62 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 HVS ++ +PL+L LAK FWPGPLT VL + I + TA L + R Sbjct: 63 HVSGADALEDICHANPLALRLAKRFWPGPLTFVLP--KKSKIPNIVTAGLDSVAVRCSAH 120 Query: 123 F-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 +L+E P+A PSAN IS T +H+ + + +I I+DGG G+ESTI+ Sbjct: 121 PDFHRLVEQCDFPIAAPSANPFAYISPTTAQHV-QAGLGSKITFILDGGSCSFGVESTIL 179 Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCV----DETSTPQSPGMLKSHYAPRSQVR 237 +++ E RILR G L E ++ + +E DE+ +PG L HY+PR+ + Sbjct: 180 DLRDETNPRILRYGALPAEDIEVELGRSIEKPTFITADESVQHLAPGALPKHYSPRTPLE 239 Query: 238 LRAIHVNPREALIRFGNVPI----KNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293 LR N A ++ + LS+ GKL E A NL+ ++ D+SG Sbjct: 240 LRGGISNAELASLKNDQAALLLARPEGSFPGNVHWLSENGKLSEIASNLYAKLREIDESG 299 Query: 294 ASSIAFSSIPNHGLGIAINNRLERAA 319 ++I P GLG+AIN+RL RA+ Sbjct: 300 YATIFAEEAPELGLGLAINDRLRRAS 325 >gi|116618871|ref|YP_819242.1| translation factor SUA5 [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097718|gb|ABJ62869.1| translation factor SUA5 [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 337 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 105/330 (31%), Positives = 166/330 (50%), Gaps = 16/330 (4%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 T N + +A + G +A PTETVYGL D+ N +AI++++ K RPA NPLI V+D Sbjct: 8 TTKNDIEEASRLIQNGEVVAFPTETVYGLGADATNESAIKKVFVAKGRPADNPLIMTVAD 67 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126 + + + ++ + L FWPG LT++L + + L T L+T FR+P + Sbjct: 68 AAQLDEFVTISDQARGLMDHFWPGSLTIILPIKPGK-VSMLVTGGLQTVAFRLPANDAAR 126 Query: 127 -LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LI G P+ PSAN SG+ S T +H+ + +I I+D G +++G+EST+V++ Sbjct: 127 TLIRAAGVPIVGPSANTSGKPSPTTAQHVW-HDMQNKIAGIVDDGPTQVGVESTVVDMSI 185 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETS-----TPQSPGMLKSHYAPRSQVR--- 237 + ILRPG + L+ + +++ S TP++PGM HYAP V Sbjct: 186 STPI-ILRPGAVTQPQLEEVLQMKVIDATSTESVASNVTPKAPGMKYRHYAPDKNVVMFD 244 Query: 238 -LRAIHVNPREALIRFGNVPIKNIENAIISLN--LSKTGKLKEAAFNLFNYMKIA-DDSG 293 L A+ + A IE ++ + S L+ A LF ++ DDS Sbjct: 245 GLDALELKQVLAPNDVVMAKDDMIEKMALTNHQAWSLGNTLETATEQLFAGLRFYDDDSQ 304 Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAAPRN 323 ++I +P G+G A NNRL +AA + Sbjct: 305 ITTIYVQKMPPIGIGKAFNNRLGKAAGNQE 334 >gi|14602037|ref|NP_148583.1| putative translation factor [Aeropyrum pernix K1] gi|5106101|dbj|BAA81412.1| putative translation factor [Aeropyrum pernix K1] Length = 367 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 109/350 (31%), Positives = 168/350 (48%), Gaps = 36/350 (10%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D A+ +A E L G +A PTETVYGL D+ NP A R++E+K RP NPLI HVS + Sbjct: 22 DRRAIERAAEVLRRGGLVAFPTETVYGLGADALNPRAAARIFEVKGRPPDNPLIVHVSSL 81 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 M + A + +L L + WPGPLTLVL + + TA L+T R+P + Sbjct: 82 EMARTVAEIPGKALRLVEKLWPGPLTLVLPRKPV--VPDIVTAGLETVAVRMPAHKVALE 139 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L++ G P+A PSAN SG+ S T+ +H++ + + +I+D G + G+ESTI+++ Sbjct: 140 LVKAAGRPVAAPSANPSGRPSPTSGEHVIRD-LDCMVDVILDAGETYFGVESTIIDLTRT 198 Query: 187 KKVRILRPGGLEIETLKRAISVEL-----EYCVDETSTPQSPGMLKSHYAPRSQVRLR-- 239 V +LRPG + +E L+R + ++ + P +PGM HYAP + + L Sbjct: 199 PPV-LLRPGPIPVEVLERLLEEKILVPPEARGLRAADRPLAPGMKYRHYAPDTPLILVDT 257 Query: 240 -----------AIHVNPREALIRFGNVPIKNIENAI------------ISLNLSKTGKLK 276 A+ R +R V + + + L Sbjct: 258 SPGAVERIVEAAVREVARARGLRVALVGPDELVDVVALLLRLRGVEPAAIFRLGPLADTT 317 Query: 277 EAAFNLFNYMKIADDSG-ASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325 AA LF ++ D+ G P G+G+A+ NRL +AA+ R + Sbjct: 318 VAARRLFKTLRRIDELGNIDVAIVLPFPERGIGLAVMNRLRKAASRRVGA 367 >gi|325479327|gb|EGC82423.1| Sua5/YciO/YrdC/YwlC family protein [Anaerococcus prevotii ACS-065-V-Col13] Length = 344 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 103/334 (30%), Positives = 164/334 (49%), Gaps = 22/334 (6%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 D ++KA L G +AIPTETVYGL + + A R+++E K RPA NPLI H+ Sbjct: 11 DNIDQKIIKKAANLLKDGKLVAIPTETVYGLGANGLDDLACRKIFETKNRPADNPLILHI 70 Query: 65 SDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CG 122 S+I M+ V + L WPGPLT++ + I TA T R P Sbjct: 71 SNIDMLYNLVEGVSDEARKLFD-LWPGPLTMIF--KKSKLIPDTVTAGGDTVAIRFPVDK 127 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 +++I P+A PSAN SG+ S TN + +IPLI+DGG SKIG+EST+++ Sbjct: 128 IAREIISEANLPIAAPSANISGRPSPTNAVDCFFD-LNGKIPLIVDGGESKIGIESTVID 186 Query: 183 VQCEKKVRILRPGGLEIETLKRAI-SVELEYC-VDETSTPQSPGMLKSHYAPRSQVRLRA 240 + + ILRPG +E L+ + +V L+ VD+ P+SPG HYAP++++++ Sbjct: 187 LSEDVP-TILRPGFYTLEMLREILPNVRLDDALVDDNVVPKSPGQKYKHYAPKARMQVYV 245 Query: 241 IHVNPREALIRFGNVPIKNIENAIISL-------------NLSKTGKLKEAAFNLFNYMK 287 + + + I ++ + L + + LF+ ++ Sbjct: 246 GKRASDFIYKKAKSYKNQGIHVGVLVFEEDIDRFDEFDRISFGSRNDLNQMSHTLFSSLR 305 Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 D G I + ++ LG +I NR++++AA Sbjct: 306 QMDKLGVDLILAEGVMDNNLGKSIMNRMKKSAAG 339 >gi|116333897|ref|YP_795424.1| putative translation factor (SUA5) [Lactobacillus brevis ATCC 367] gi|116099244|gb|ABJ64393.1| translation factor SUA5 [Lactobacillus brevis ATCC 367] Length = 338 Score = 316 bits (811), Expect = 2e-84, Method: Composition-based stats. Identities = 109/315 (34%), Positives = 158/315 (50%), Gaps = 19/315 (6%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-VDPLS 80 G +A PTETVYGL D+ N A++++Y K RP+ NPLI HV+ VK A + + Sbjct: 21 GQLVAFPTETVYGLGADATNEAAVKQVYLAKGRPSDNPLIVHVTGEETVKAFAQPLSDKA 80 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPLAIPS 139 L K FWPGPLTL+ L + T L TA FR P LI+ G PL PS Sbjct: 81 EALIKAFWPGPLTLIFALQPGK-LSSAVTGGLNTAAFRNPDNAATLALIKAAGVPLVGPS 139 Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEI 199 AN SG+ S T KH+ + +I I+D G +K+G+EST++++ + ILRPGG+ Sbjct: 140 ANTSGKPSPTLAKHVY-HDLNGKIAGILDDGPTKVGVESTVLDMSTDIP-TILRPGGVTE 197 Query: 200 ETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP----REALIRFG 253 E L I + V +T P++PGM HYAP +QV + + + A + G Sbjct: 198 EQLAAVIGTVQSSHHKVGKTEVPKAPGMKYKHYAPNAQVTIVDHEADWTAALQWASEQSG 257 Query: 254 NVPIKNIENAIISLNL-------SKTGKLKEAAFNLFNYMKIAD-DSGASSIAFSSIPNH 305 + + ++ + + NL S L A+ LF ++ D +S + I Sbjct: 258 TIGVMAVDRILQAHNLPDNVEAFSLGHDLTSASHRLFAGLRHFDLESPVTGILAQGFTAE 317 Query: 306 GLGIAINNRLERAAA 320 GLG A NRL ++A Sbjct: 318 GLGAAYMNRLNKSAG 332 >gi|126664215|ref|ZP_01735207.1| translation factor, SUA5-family protein [Flavobacteria bacterium BAL38] gi|126623747|gb|EAZ94443.1| translation factor, SUA5-family protein [Flavobacteria bacterium BAL38] Length = 317 Score = 316 bits (810), Expect = 3e-84, Method: Composition-based stats. Identities = 112/319 (35%), Positives = 159/319 (49%), Gaps = 14/319 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S L +A L+ I PTETVYGLA ++ + AI+++YE+KKRP+ NPLI H+ Sbjct: 3 STNLDQAVALLNKDQIIGFPTETVYGLAGNAFSDVAIKKIYEVKKRPSFNPLIVHIKSFD 62 Query: 69 MVKKHASVDPLSLHLAK-LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + A+ P HL FWPGPLTL+L T I L TANL T R+P + Sbjct: 63 FLDTIATEIPEKAHLLANAFWPGPLTLLLKKQPT--ISNLVTANLDTVAVRIPNHPVALE 120 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+ PL PSAN +IS T +H+ + EI +++DGG G+ESTIV + Sbjct: 121 LLHQLDFPLVAPSANPFTRISPTKAEHV-AQYFENEIDMVLDGGTCTAGVESTIVGFESN 179 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL------RA 240 K V + R G L +E +++ + + P++PGM HY+P+++ L Sbjct: 180 K-VIVYRLGALSLEAIEKVVG-PVTIINKNKKNPKAPGMFLKHYSPKTEFILTRNLQSEI 237 Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300 ++ + N N E LSK L EAA NL+ + D I Sbjct: 238 DWFQDKKVGLLLFNTIQPNFELK-NQFVLSKDSNLNEAAANLYEALHELDKLNLDLIIAE 296 Query: 301 SIPNHGLGIAINNRLERAA 319 P +GLGI IN+RLERA+ Sbjct: 297 RFPEYGLGITINDRLERAS 315 >gi|217976634|ref|YP_002360781.1| Sua5/YciO/YrdC/YwlC family protein [Methylocella silvestris BL2] gi|217502010|gb|ACK49419.1| Sua5/YciO/YrdC/YwlC family protein [Methylocella silvestris BL2] Length = 328 Score = 316 bits (810), Expect = 4e-84, Method: Composition-based stats. Identities = 129/316 (40%), Positives = 181/316 (57%), Gaps = 8/316 (2%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 ++ L + L A +A PTETVYGL D+ A+ R+Y K RPA NPLI HV+ + Sbjct: 19 NAAGLAEGARLLQAEKLVAFPTETVYGLGADASCDAAVARIYAAKGRPAFNPLISHVASL 78 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKK 126 + +H + LA+ FWPGPLTLVL + +T + L+ A +T RVP Sbjct: 79 AEASRHGIFSAAARRLAETFWPGPLTLVLPVAATNRVCELARAGRRTVALRVPAHKDALA 138 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LI G P+A PSANRSG++S +H+ + + E+ LI+DGG +G+ESTIV E Sbjct: 139 LIAAAGLPIAAPSANRSGRVSPVTARHV-AEDLGDEVDLILDGGACHVGVESTIVACLGE 197 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246 ++LRPGGL ++ A+ + L + +S +PG L SHYAPR+ VRL A + P Sbjct: 198 TP-QLLRPGGLSRAVIEEALGLAL-PAREASSEIVAPGALASHYAPRALVRLDAEKLEPG 255 Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306 EA + FG +L+LS L EAA NLF +++ D G ++IA + IP G Sbjct: 256 EAGLDFGG----RFTRGPATLDLSPAADLDEAAANLFAFLRELDAGGPAAIAVAPIPRSG 311 Query: 307 LGIAINNRLERAAAPR 322 +G AIN+RL+RAAAPR Sbjct: 312 IGEAINDRLKRAAAPR 327 >gi|193212146|ref|YP_001998099.1| Sua5/YciO/YrdC/YwlC family protein [Chlorobaculum parvum NCIB 8327] gi|193085623|gb|ACF10899.1| Sua5/YciO/YrdC/YwlC family protein [Chlorobaculum parvum NCIB 8327] Length = 314 Score = 316 bits (810), Expect = 4e-84, Method: Composition-based stats. Identities = 100/323 (30%), Positives = 163/323 (50%), Gaps = 12/323 (3%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 MQ + +TD +A L+ G +A PTETVYGL D+ NP A+ ++ K RP+ NPL Sbjct: 1 MQTL-VTDKP--EEAASHLNRGETVAFPTETVYGLGADAFNPDAVAGIFRAKGRPSDNPL 57 Query: 61 ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I HV+ V + A ++ + L + ++PGPLT+VL + + + +A L T R Sbjct: 58 IVHVASPDRVGEVAREINEAAQRLIERYFPGPLTIVLKKRDS--VPDIVSAGLPTVGVRC 115 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P + + HP+A PSAN SG+ S T+ K + + +I ++ G S IGLES Sbjct: 116 PAHSQAAEFLRHCKHPVAAPSANVSGRPSPTDWKTVY-HDLGGKIACLLRGEPSTIGLES 174 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAI-SVELEYCVDETSTPQSPGMLKSHYAPRSQVR 237 TIV+ + + +LR G + +E L+ + +++ E P+SPG HY+P +++ Sbjct: 175 TIVDCSVKPPL-LLRSGAISLEALQEIVPDIKVATTCREGEAPKSPGQKYRHYSPEAEII 233 Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297 L + + + + + A + +L + L E A LF + + D G +I Sbjct: 234 LVETAPSSLPTEQKAAWIGL-STPPAGATKSL-QCHDLDEYARVLFGFFRTCDAEGIRTI 291 Query: 298 AFSSIPNHGLGIAINNRLERAAA 320 P G+G AI +RL +AA Sbjct: 292 YCELPPEEGIGRAIRDRLVKAAG 314 >gi|307718163|ref|YP_003873695.1| hypothetical protein STHERM_c04500 [Spirochaeta thermophila DSM 6192] gi|306531888|gb|ADN01422.1| hypothetical protein STHERM_c04500 [Spirochaeta thermophila DSM 6192] Length = 330 Score = 315 bits (809), Expect = 4e-84, Method: Composition-based stats. Identities = 115/328 (35%), Positives = 178/328 (54%), Gaps = 17/328 (5%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +++ TD A+ +A L G +A PTETVYGL ++ + A+ R++EIK+RP +PLI Sbjct: 5 RVLPATDE-AIEEAARLLREGEAVAFPTETVYGLGANALDAVAVARIFEIKERPLFDPLI 63 Query: 62 CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 H+++ M+K+ V ++ L FWPGPLTLVL + + TA L T R+P Sbjct: 64 VHIAEEGMLKEVVREVPSIARRLMARFWPGPLTLVLP--KGERVPGIVTAGLPTVGVRMP 121 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 ++LIE G P+A PSANR G +S T H+ + + L++DGG ++G+EST Sbjct: 122 AHPVARRLIERAGVPIAAPSANRFGSLSPTRAGHVAG-QLGGRVALVLDGGACEVGVEST 180 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV--DETSTPQSPGMLKSHYAPRSQVR 237 +V V+ +VR+LRPGG+ +E L+ A+ + ++PGML HYAP V Sbjct: 181 VVRVEG-GRVRVLRPGGVAVEALEEAVGRGAVVVGGPEREGAQEAPGMLPWHYAPSVPVV 239 Query: 238 LRAIHVNPR------EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291 + P L+ + VP + A+ LS G L+EAA LF + ++ Sbjct: 240 VLEGGAMPGAEEAREAGLLAWREVPARPAFRAVEV--LSPRGDLQEAAARLFEGLHRLEE 297 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAA 319 +G + I ++P GLG A+ +RL +AA Sbjct: 298 AGVARIYAEAVPEVGLGRAVMDRLRKAA 325 >gi|291460250|ref|ZP_06599640.1| SUA5/YciO/YrdC family protein [Oribacterium sp. oral taxon 078 str. F0262] gi|291417197|gb|EFE90916.1| SUA5/YciO/YrdC family protein [Oribacterium sp. oral taxon 078 str. F0262] Length = 368 Score = 315 bits (809), Expect = 4e-84, Method: Composition-based stats. Identities = 103/362 (28%), Positives = 158/362 (43%), Gaps = 51/362 (14%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + +A E + G +A PTETVYGL ++ +P A R++Y K RP+ NPLI HVS I Sbjct: 9 EGIEEAAEIIRRGGLVAFPTETVYGLGGNALSPEAARKIYAAKGRPSDNPLIVHVSGIKD 68 Query: 70 VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + + + L FWPGPLTL+L T I ++ L T R P +L Sbjct: 69 AEPLVTEITEDARRLMARFWPGPLTLIL--RKTERIPRETSGGLDTVALRCPENACALRL 126 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I G P+A PSAN SG+ S T H+ + I +I+DGG IG+ES+I+++ Sbjct: 127 ISESGVPIAAPSANLSGKPSPTEAGHVAKD-LGGRIDMILDGGPVGIGVESSILDLSTGT 185 Query: 188 KVRILRPGGLEIETLKRAISVE-------LEYCVDETSTPQSPGMLKSHYAPRSQVRL-- 238 + +LRPG + E L + + L V ET P++PGM HYAP +++ L Sbjct: 186 PI-LLRPGAVTAEELSAFLGQKVGIDPAILSGTVSETMHPRAPGMKYRHYAPEAEMYLVT 244 Query: 239 --------------------------------RAIHVNPREALIRFGNV----PIKNIEN 262 R + R ++ P + + Sbjct: 245 TRLFRDRGEAIGREERELSDRRTARWIRERAERELSEGKRVGILCVKETRPFYPPDSPDG 304 Query: 263 AIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 + L ++ +LF ++ D+ I S + G+G A+ NR+ +AA R Sbjct: 305 TLSVKVLGSREEMLTMTRSLFRLLREFDEEKKDRIYAESCSDRGVGFALMNRMRKAAGMR 364 Query: 323 NQ 324 Sbjct: 365 EI 366 >gi|218883353|ref|YP_002427735.1| Putative translation factor [Desulfurococcus kamchatkensis 1221n] gi|218764969|gb|ACL10368.1| Putative translation factor [Desulfurococcus kamchatkensis 1221n] Length = 359 Score = 315 bits (809), Expect = 4e-84, Method: Composition-based stats. Identities = 96/341 (28%), Positives = 157/341 (46%), Gaps = 34/341 (9%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 L +A L +A PTETVYGL A+ ++++ K RP NPLI H+S + M Sbjct: 18 ELLIQAARILLNKGIVAFPTETVYGLGAVIYYEDAVEKIFKAKMRPPDNPLIIHISTLDM 77 Query: 70 VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127 +++ A ++ + L FWPGPLTL+L + + T L T R+P +L Sbjct: 78 LEEVALNIPEDAYSLINRFWPGPLTLILPRNP--RVPKIVTGGLDTIAVRMPGHPTALEL 135 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I G+P+A PSAN SG+ S +H++ + I IID G + G+EST+VN+ E Sbjct: 136 INVVGYPIAAPSANLSGRPSPVTAEHVIRD-LMGRIDAIIDAGETFFGVESTVVNIL-ED 193 Query: 188 KVRILRPGGLEIETLKRAISVEL-----EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242 +LRPG +E +++ + ++ + + +PGM HY+P +++ L Sbjct: 194 PPTLLRPGAYPVEEIEKVLGRKIAIPDFARGLKYSEVALAPGMKYRHYSPEAKLILVESV 253 Query: 243 VNPREALIRFGNVPIKNI-----------------------ENAIISLNLSKTGKLKEAA 279 N + ++I E L + L E A Sbjct: 254 TNDYSVIANKIIEAARDISVSTNSDICIVSSIETSSYYRKLEKVKAVLIIGSRRNLYEVA 313 Query: 280 FNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 NLF ++ D+ G ++ P G+G+A+ NRL +A++ Sbjct: 314 KNLFKILRDVDNIGCKTVFVEGFPETGIGLAVMNRLRKASS 354 >gi|329766034|ref|ZP_08257595.1| Sua5/YciO/YrdC/YwlC family protein [Candidatus Nitrosoarchaeum limnia SFB1] gi|329137489|gb|EGG41764.1| Sua5/YciO/YrdC/YwlC family protein [Candidatus Nitrosoarchaeum limnia SFB1] Length = 346 Score = 315 bits (808), Expect = 6e-84, Method: Composition-based stats. Identities = 108/330 (32%), Positives = 158/330 (47%), Gaps = 27/330 (8%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + L G +A PTETVYGL D NP AI+++++ K RP+ NPLI H+S+ VK Sbjct: 18 IDQCVSILRKGGLVAFPTETVYGLGADGLNPKAIKKIFQAKNRPSDNPLIFHISNKKDVK 77 Query: 72 KHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 K+ P + L + FWPGPLTL+L ++ I ++T L T R+P LI Sbjct: 78 KYTKDIPATAEKLIEKFWPGPLTLIL--KKSSIIPKIATGGLNTIAIRMPSHKIALSLIN 135 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 + G+P+ PSAN G+ S T KH+L + +I +IDG S IG+ESTI+++ K Sbjct: 136 SLGNPIVAPSANLFGKPSPTLAKHVLYD-LDGKIDAVIDGRNSVIGIESTILDLTT-KTP 193 Query: 190 RILRPGGLEIETLKRAIS-----VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH-- 242 ILRPG + E LK + L + +SPGM HY+P +++ L + Sbjct: 194 TILRPGKISYEELKNLLKKVKYHPSLLGKKSKLLKVKSPGMKYKHYSPNAKIILVEGNTK 253 Query: 243 ------------VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD 290 ++ LI N + + T L A NL+ + D Sbjct: 254 NTQKKIHELIKKFQQQKKLIGIINNKNIKKIPFVKFKFIGTTKNL--IASNLYKSFRELD 311 Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAA 320 D I + LG AI NRL +AA+ Sbjct: 312 DQKVDVIIMREVDTSNLGFAIMNRLRKAAS 341 >gi|326386145|ref|ZP_08207769.1| translation factor SUA5 [Novosphingobium nitrogenifigens DSM 19370] gi|326209370|gb|EGD60163.1| translation factor SUA5 [Novosphingobium nitrogenifigens DSM 19370] Length = 320 Score = 315 bits (808), Expect = 6e-84, Method: Composition-based stats. Identities = 125/312 (40%), Positives = 169/312 (54%), Gaps = 12/312 (3%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 A+ +A E + G +A+PTETVYGLA + A+ +Y K RP NPLI HV+DI+ Sbjct: 20 AIVRAAEVIREGGLVAVPTETVYGLAARADRDEAVAGIYRAKGRPDFNPLIVHVADIAGA 79 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 ++ A +D + L + FWPGPLTLV+ + +A L T R P + LIE Sbjct: 80 ERLAHLDATARKLIEAFWPGPLTLVVPRREDAGLSAAVSAGLPTVALRCPAHPVMRALIE 139 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PLA PSANRSG +S T H+ SS + + LI+DGG GLESTIV V+ + Sbjct: 140 AAGVPLAAPSANRSGGVSPTTADHVFSS-LGHRVDLILDGGTCARGLESTIVGVRPGGRW 198 Query: 190 RILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREAL 249 +LRPG ++ ETL + E E ++PG L SHYAP VRL A E + Sbjct: 199 TLLRPGPIDRETLAALLGHENEEMARGG--IEAPGQLASHYAPGKPVRLGADAPEADEFM 256 Query: 250 IRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGI 309 I FG V ++LS++G EAA L+ + + S IA ++IP G+G Sbjct: 257 IGFGPVKGD--------VSLSESGDPAEAAARLYACLHAGAAAPQSRIAIAAIPGEGIGE 308 Query: 310 AINNRLERAAAP 321 AIN+RL RAA P Sbjct: 309 AINDRLRRAAVP 320 >gi|296448212|ref|ZP_06890109.1| Sua5/YciO/YrdC/YwlC family protein [Methylosinus trichosporium OB3b] gi|296254296|gb|EFH01426.1| Sua5/YciO/YrdC/YwlC family protein [Methylosinus trichosporium OB3b] Length = 323 Score = 315 bits (807), Expect = 7e-84, Method: Composition-based stats. Identities = 125/310 (40%), Positives = 178/310 (57%), Gaps = 4/310 (1%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 L G +A PTETVYGL D+ +P A+ R+Y K RP+ NPLI HV+D+ A++ Sbjct: 17 RLLRDGGLVAFPTETVYGLGADATSPAAVARIYRAKGRPSFNPLIAHVADLDAALAEAAL 76 Query: 77 DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPL 135 ++ LA+ WPGPLTLV ++ + L+ A L + RVP LI G P+ Sbjct: 77 PKAAIRLAETLWPGPLTLVAPRVAAGSVCDLACAGLASVALRVPEAPVALALIRAAGRPI 136 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 A PSANRSG +S H++ + + L++DGG ++ G+ESTI++ E R+LRPG Sbjct: 137 AAPSANRSGHVSPVTAAHVI-EDLDGAVDLVLDGGRAERGVESTILSFVGETP-RLLRPG 194 Query: 196 GLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNV 255 L ETL+ + LE + +PGM SHYAPR+++RL A + EA + F Sbjct: 195 ALARETLEALLGRPLE-TTGAAAAVVAPGMTASHYAPRARLRLDASALREGEAGLDFAGA 253 Query: 256 PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRL 315 + A + ++LS G L+EAA NLF +++ D GA IA + IP HGLG AI +RL Sbjct: 254 LRARADAAAMIVDLSPKGDLEEAAANLFGHLRELDARGADHIAVAPIPAHGLGEAIADRL 313 Query: 316 ERAAAPRNQS 325 RAAAPR ++ Sbjct: 314 RRAAAPRTKA 323 >gi|150866973|ref|XP_001386755.2| hypothetical protein PICST_33949 [Scheffersomyces stipitis CBS 6054] gi|149388229|gb|ABN68726.2| predicted protein [Scheffersomyces stipitis CBS 6054] Length = 387 Score = 315 bits (807), Expect = 7e-84, Method: Composition-based stats. Identities = 112/365 (30%), Positives = 171/365 (46%), Gaps = 48/365 (13%) Query: 5 SITD---SNALRKAC-EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 +ITD + +R A E + + PTETVYGLA + N ++R +Y K RPA NPL Sbjct: 25 TITDKQTEDNIRLAANELVHTTNCVGFPTETVYGLAGSALNDDSVRSIYRAKNRPADNPL 84 Query: 61 ICHVSDISMVK-----KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115 I HVS + +K + + + L+L FWPGPLT++L + + I L TAN T Sbjct: 85 IVHVSSLDQLKRKLLPRDYEIPSVYLNLIDKFWPGPLTILLPIHKDSPISKLVTANQSTF 144 Query: 116 CFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174 R+P + LI PLA PSAN S + S T +H+ + +IP I+DGG + Sbjct: 145 AVRMPNHPIARALIAVSDTPLAAPSANASTRPSPTLAQHVF-HDLQGKIPYILDGGACDV 203 Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL-------EYCVDETSTPQSPGMLK 227 G+EST+V+ + +LRPGG+ +E + R + EL + + ++PGM Sbjct: 204 GVESTVVDGLVSPPM-LLRPGGVSVEEI-RTVGGELWENVILSKKTAGKNEAVRTPGMKY 261 Query: 228 SHYAPRSQVRL-------------RAIHVNPREALIRFGNVPIKNIENAI-------ISL 267 HY+P ++V L N I+ + + ++A I Sbjct: 262 RHYSPTAKVVLFVDCGDGAKAVNDYIDQNNIDPVQIKIALLKSRTFQDADKINSNIYIQR 321 Query: 268 NLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA------AP 321 L TG E + NLF ++ D+ G I I G+A+ NRL +AA Sbjct: 322 ELGTTGS--EISHNLFKALREMDEYGVDLIMIEGIDESNEGLAVMNRLSKAALVTVKGGE 379 Query: 322 RNQSQ 326 R++ + Sbjct: 380 RDEGK 384 >gi|313631919|gb|EFR99062.1| protein Sua5 [Listeria seeligeri FSL N1-067] Length = 303 Score = 315 bits (807), Expect = 7e-84, Method: Composition-based stats. Identities = 99/306 (32%), Positives = 155/306 (50%), Gaps = 19/306 (6%) Query: 37 VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLV 95 D+ N AI+++YE K RP+ NPLI H++ + AS ++ L + FWPGPLT++ Sbjct: 1 ADATNQAAIQKIYEAKGRPSDNPLIVHIASRDQMDAFVASYPQKAIKLMEKFWPGPLTVI 60 Query: 96 LDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPLAIPSANRSGQISITNVKHI 154 L L + + +A L T R+P LI+ G P+A PSANRSG+ S T+ H+ Sbjct: 61 LPLKKDS-LASNVSAGLSTVGVRMPDHPVSLALIKEAGIPVAAPSANRSGKPSPTSASHV 119 Query: 155 LSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYC 213 + + ++ IIDGG + +GLEST+++ E V ILRPGG+ E +++ I VEL Sbjct: 120 I-EDLDDKVAGIIDGGATGVGLESTVIDCSTEIPV-ILRPGGITKEQIEQVIGSVELANN 177 Query: 214 -VDETSTPQSPGMLKSHYAPRSQVRL------------RAIHVNPREALIRFGNVPIKNI 260 ET P++PGM +HYAP++ V L + ++ I + + Sbjct: 178 DTKETEKPKAPGMKYTHYAPKAPVYLVEGSKAFWQKEINKVEAAHKKLGILATKELLDGL 237 Query: 261 ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ ++E A L+ ++ D + I P LG A+ NRLE+AA Sbjct: 238 TTNAVTQTTGSIESMEEIANQLYKGLRAFDHAEVDIIFAEVYPETELGAAVMNRLEKAAG 297 Query: 321 PRNQSQ 326 R S+ Sbjct: 298 NRRISE 303 >gi|194333295|ref|YP_002015155.1| Sua5/YciO/YrdC/YwlC family protein [Prosthecochloris aestuarii DSM 271] gi|194311113|gb|ACF45508.1| Sua5/YciO/YrdC/YwlC family protein [Prosthecochloris aestuarii DSM 271] Length = 316 Score = 315 bits (807), Expect = 7e-84, Method: Composition-based stats. Identities = 113/325 (34%), Positives = 163/325 (50%), Gaps = 12/325 (3%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 MQ + ITDS R+A +F++ G +A PTETVYGL D N A++R++ K RP NPL Sbjct: 1 MQTL-ITDSP--REAADFINRGQIVAFPTETVYGLGADITNDDAVQRIFLAKGRPGDNPL 57 Query: 61 ICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I HV V+K AS+ + L F+PGPLTLVL + I PL TA L T R Sbjct: 58 IVHVYSPKEVEKVAASIPETARKLMDRFFPGPLTLVL--CKQSRISPLVTAGLPTVGVRC 115 Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T+ + HP+A PSAN SG+ S T+ K + + +I I+ G S IGLES Sbjct: 116 PRHPVTRAFLRECRHPVAAPSANLSGKPSSTDWKSV-HEDLNGKINCILRGEQSAIGLES 174 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAI-SVELEYCVDETSTPQSPGMLKSHYAPRSQVR 237 TIV+ E R+LR G + ++ L+ + + ++E + P+SPG+ HYAP +++R Sbjct: 175 TIVDCATE-PPRLLRAGAISLDELRAIVPGLLGPAAIEEHAQPKSPGLKYPHYAPSAEIR 233 Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297 L E + + + E A LF + + D +I Sbjct: 234 LCGEEYGVCEGGKETAWIGLSPPPEGAAVT--CRCDDAGEYAHRLFRFFRECDREHIRTI 291 Query: 298 AFSSIPNHGLGIAINNRLERAAAPR 322 P G+G A+ +RL RAA + Sbjct: 292 FCEMPPPEGIGQALRDRLRRAAEGK 316 >gi|313636281|gb|EFS02090.1| protein Sua5 [Listeria seeligeri FSL S4-171] Length = 303 Score = 315 bits (807), Expect = 8e-84, Method: Composition-based stats. Identities = 98/306 (32%), Positives = 155/306 (50%), Gaps = 19/306 (6%) Query: 37 VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLV 95 D+ N AI+++YE K RP+ NPLI H++ + AS ++ L + FWPGPLT++ Sbjct: 1 ADATNQAAIQKIYEAKGRPSDNPLIVHIASRDQMDAFVASYPQKAIKLMEKFWPGPLTVI 60 Query: 96 LDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPLAIPSANRSGQISITNVKHI 154 L L + + +A L T R+P LI+ G P+A PSAN+SG+ S T+ H+ Sbjct: 61 LPLKKDS-LASNVSAGLSTVGVRMPDHPVSLALIKEAGIPVAAPSANQSGKPSPTSASHV 119 Query: 155 LSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYC 213 + + ++ IIDGG + +GLEST+++ E V ILRPGG+ E +++ I VEL Sbjct: 120 I-EDLDDKVAGIIDGGATGVGLESTVIDCSTEIPV-ILRPGGITKEQIEQVIGSVELANN 177 Query: 214 -VDETSTPQSPGMLKSHYAPRSQVRL------------RAIHVNPREALIRFGNVPIKNI 260 ET P++PGM +HYAP++ V L + ++ I + + Sbjct: 178 DTKETEKPKAPGMKYTHYAPKAPVYLVEGSKAFWQKEINKVEAAHKKLGILATKELLDGL 237 Query: 261 ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ ++E A L+ ++ D + I P LG A+ NRLE+AA Sbjct: 238 TTNAVTQTTGSIESMEEIANQLYKGLRAFDHAEVDIIFAEVYPETELGAAVMNRLEKAAG 297 Query: 321 PRNQSQ 326 R S+ Sbjct: 298 NRRISE 303 >gi|284047802|ref|YP_003398141.1| Sua5/YciO/YrdC/YwlC family protein [Acidaminococcus fermentans DSM 20731] gi|283952023|gb|ADB46826.1| Sua5/YciO/YrdC/YwlC family protein [Acidaminococcus fermentans DSM 20731] Length = 368 Score = 315 bits (807), Expect = 9e-84, Method: Composition-based stats. Identities = 106/331 (32%), Positives = 162/331 (48%), Gaps = 22/331 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 L A L G +A PTETVYGL D N A R+++ K RPA NPLI H+S+ Sbjct: 15 EAQLAPAARLLQQGEVVAFPTETVYGLGADGLNGEACRKIFAAKGRPADNPLILHISEKE 74 Query: 69 MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126 + S + P++ L + FWPGP+TL++ + I + TA +T R P + Sbjct: 75 EILPLTSGLSPMAEKLMEAFWPGPMTLIVP--KSDRIPEVVTAGQETVAVRFPSNPVARA 132 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LI G PLA PSAN+SG+ S TN + +L + I ++DGG IG+ESTI++ Sbjct: 133 LIRLTGRPLAAPSANKSGKPSPTNAQDVL-QDMDGIIGGVVDGGACDIGVESTIIDTTGT 191 Query: 187 KKVRILRPGGLEIETLKRAIS-VELEYC-VDETSTPQSPGMLKSHYAPRSQVRLRAI--- 241 V ILRPGG+ E ++ + VEL+ V P++PGM HYAP++ + L Sbjct: 192 VPV-ILRPGGITEEMIQEVMGEVELDPGLVRPDQKPKAPGMKYRHYAPKAPMVLIEGPEA 250 Query: 242 -------HVNPREALIRFGNVPIKN----IENAIISLNLSKTGKLKEAAFNLFNYMKIAD 290 + ++ G + + + +A + + L + A NL+ ++ D Sbjct: 251 GLGVIRAAIMAEAWGLKVGVLALDETVGHLPHAAHLVICNAGKDLGDLAENLYTELREFD 310 Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 I + GLG+AI NR+ ++A Sbjct: 311 RQQVDIILGEGVSTRGLGLAIMNRMRKSAGH 341 >gi|303230732|ref|ZP_07317479.1| Sua5/YciO/YrdC/YwlC family protein [Veillonella atypica ACS-049-V-Sch6] gi|302514492|gb|EFL56487.1| Sua5/YciO/YrdC/YwlC family protein [Veillonella atypica ACS-049-V-Sch6] Length = 344 Score = 314 bits (806), Expect = 9e-84, Method: Composition-based stats. Identities = 105/345 (30%), Positives = 161/345 (46%), Gaps = 30/345 (8%) Query: 1 MQIMSITD--SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58 M+ IT+ + L+ L G +AIPTETVYGL + + A+ ++Y K RP+ N Sbjct: 1 METKIITELTRDNLQLVAHALRHGDVVAIPTETVYGLGANGLDADAMDKIYAAKGRPSDN 60 Query: 59 PLICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 PLI HV + +K P + L + FWPGPLT+ L + + +T L Sbjct: 61 PLILHVPNAESIKPLVKEIPETAKALIEAFWPGPLTITLP--KSDLVPDRATGGLARVAL 118 Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R P + ++E G P+A PSAN SG+ S T + + + IP I+D GI IG+ Sbjct: 119 RCPDHAVCRNILELAGVPIAAPSANISGRPSPTTAQSVY-DDMNGRIPYIVDAGICTIGV 177 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAIS--VELEYCVDETSTPQSPGMLKSHYAPRS 234 EST+V V+ + V ILRPGG+ E L++ + + + P++PGM HYAP + Sbjct: 178 ESTVVEVRDDG-VTILRPGGITKEMLEQVVDNVSYDPFLSSQNEAPKAPGMKYKHYAPDA 236 Query: 235 QVRLRAIHVNPREALIRFGNVPIKNIENAIISL------------------NLSKTGKLK 276 +R A NP++ F NV + L +G Sbjct: 237 PMR--AFIGNPKDVAETFSNVIREQETKRGAFLISQETYELLKDSVHGEFHVYGHSGDAV 294 Query: 277 EAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 A + + + ++ I + N GLG+A+ NR+E+A A Sbjct: 295 ALAHDFYKTLHHFNECDVDYILAEGVENTGLGVAVMNRMEKACAG 339 >gi|294495411|ref|YP_003541904.1| Sua5/YciO/YrdC/YwlC family protein [Methanohalophilus mahii DSM 5219] gi|292666410|gb|ADE36259.1| Sua5/YciO/YrdC/YwlC family protein [Methanohalophilus mahii DSM 5219] Length = 355 Score = 314 bits (806), Expect = 1e-83, Method: Composition-based stats. Identities = 113/340 (33%), Positives = 174/340 (51%), Gaps = 25/340 (7%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+I T + +KA + L G +A PTETVYGL D+ NP A+ ++++ K RPA NPL Sbjct: 14 MRIAEETAEDIFKKAGKLLREGKTVAFPTETVYGLGADALNPQAVEQIFKAKGRPADNPL 73 Query: 61 ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I HVS+ + + PL+ LA+ FWPGPLT++L+ T + ++T L+T R+ Sbjct: 74 IVHVSNQEQCNQLVITFTPLAEKLAECFWPGPLTIILE--KTDRVPYITTGRLETVAIRM 131 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P +K+IE P+A PSAN SG+ S T H+ + I I+DGG +IG+ES Sbjct: 132 PANQIARKIIEAACKPIAAPSANISGRPSPTTASHV-EEDLQGRIDAIVDGGEVEIGVES 190 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVE--LEYCVDET-STPQSPGMLKSHYAPRSQ 235 T+V+ + E V ILRPG + + +++ E + Y + P SPGM +HY+P ++ Sbjct: 191 TVVDARREVPV-ILRPGKISAKDIQQCTKTEVCIGYARKDNMEKPLSPGMKYTHYSPSAR 249 Query: 236 VRLRAIHVNPREALI------------RFGNVPIKNIENAII---SLNLSKTGKLKEAAF 280 V L A I + G + I+ L++ + K +EAA Sbjct: 250 VILVQGKAKDVAAKIADIIGKTNDDQKKAGLLLTVEIQKEFPLEKKLSIGQGTKPREAAK 309 Query: 281 NLFNYMKIADDSGASSIAFSS-IPNHGLGIAINNRLERAA 319 +F ++ D G I G+G A+ RL++AA Sbjct: 310 RIFAGLREMDSKGMDLIIVDGSFTEKGIGAAVLERLQKAA 349 >gi|315186249|gb|EFU20010.1| translation factor SUA5 [Spirochaeta thermophila DSM 6578] Length = 330 Score = 314 bits (806), Expect = 1e-83, Method: Composition-based stats. Identities = 115/328 (35%), Positives = 173/328 (52%), Gaps = 17/328 (5%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +++ TD + +A L G +A PTETVYGL ++ + A+ R++EIK+RP +PLI Sbjct: 5 RVVPATDET-IEEAARLLREGEAVAFPTETVYGLGANALDAVAVARIFEIKERPLFDPLI 63 Query: 62 CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 H+S MV + V L+ L FWPGPLTLVL + + TA L T R+P Sbjct: 64 VHISGEEMVGEVVREVPDLARTLMARFWPGPLTLVLP--KGERVPGIVTAGLPTVGVRMP 121 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 ++LIE P+A PSANR G +S T H+ + + L++DGG ++G+EST Sbjct: 122 AHPVARRLIEKAEVPIAAPSANRFGSLSPTRAGHVAG-QLGGRVALVLDGGACEVGVEST 180 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV--DETSTPQSPGMLKSHYAPRSQVR 237 +V V+ +VR+LRPGG+ +E L+ A+ + ++PGML HYAP V Sbjct: 181 VVRVEG-GQVRVLRPGGVPVEALEEAVGRGAVVVGGPEREGAQEAPGMLPWHYAPSVPVV 239 Query: 238 LRAIHVNPR------EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291 + P L+ F P + A+ LS G L+EAA LF + ++ Sbjct: 240 VLEGGAMPGAEEAREAGLLAFRGAPEEPAFRAVEV--LSPRGDLQEAAAGLFEGLHRLEE 297 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAA 319 +G + I ++P GLG A+ +RL +AA Sbjct: 298 AGVARIYAEAVPEVGLGRAVMDRLRKAA 325 >gi|298674856|ref|YP_003726606.1| Sua5/YciO/YrdC/YwlC family protein [Methanohalobium evestigatum Z-7303] gi|298287844|gb|ADI73810.1| Sua5/YciO/YrdC/YwlC family protein [Methanohalobium evestigatum Z-7303] Length = 358 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 114/343 (33%), Positives = 172/343 (50%), Gaps = 29/343 (8%) Query: 2 QIMSITDSN---ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58 +I+ I SN ++ KA E L +A PTETVYGL ++ + ++R+++ K RP N Sbjct: 6 EILRINSSNFSESISKAAEILKNRGTVAFPTETVYGLGANALDSVSVRKIFSAKGRPPDN 65 Query: 59 PLICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 PLI H++ + P + L FWPGPLTL+L + ++T L T Sbjct: 66 PLIVHIASKEQAIDISEDIPDNAFLLMDAFWPGPLTLILKR--KNFVPDVTTGGLNTVAI 123 Query: 118 RVPCGFTK-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P T +LI+ G P+A PSAN SG+ S T +H++S + +I I+D G IG+ Sbjct: 124 RMPDNETAIELIKKAGVPIAAPSANISGKPSPTTAEHVISD-LYGKIDAIVDNGAVDIGV 182 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAI-SVELEYCVDE--TSTPQSPGMLKSHYAPR 233 EST+V++ +K + +LRPGG+ IE LK I +E+ Y + +SPGM HY+P Sbjct: 183 ESTVVDMTSDKPL-LLRPGGIGIEDLKEYIPDIEIGYNSENLIDKKVKSPGMKYIHYSPS 241 Query: 234 SQVRLRAIHVNPREAL-----------IRFGNVPIKNIENAIISLN-----LSKTGKLKE 277 S+V L E + + G + N I N L +K+ Sbjct: 242 SKVVLVEGFYRVSEKINQVISDYHKNDLNVGLLVTNETGNQITDKNINIFLLGNRDNIKK 301 Query: 278 AAFNLFNYMKIADDSGASSIAFSS-IPNHGLGIAINNRLERAA 319 A NLF ++ DD I I + G+G A+ NRL++AA Sbjct: 302 VANNLFKGLRTLDDMNLDVIIVDGSIKHEGIGSAVINRLQKAA 344 >gi|85375447|ref|YP_459509.1| putative translation factor [Erythrobacter litoralis HTCC2594] gi|84788530|gb|ABC64712.1| putative translation factor [Erythrobacter litoralis HTCC2594] Length = 314 Score = 313 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 120/314 (38%), Positives = 168/314 (53%), Gaps = 13/314 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + + +A ++AG +A+PTETVYGLA + +P A+ +Y K RP+ NPLI HV D Sbjct: 13 DRHGVAQAARIINAGGLVAVPTETVYGLAARADDPDAVAAIYAAKGRPSFNPLIVHVLDP 72 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + + +D + LA FWPGPLT+VL L D+ TA L T RVP ++ Sbjct: 73 AAAGRLVEMDDKAQALAGRFWPGPLTMVLPLRDAADVAGAVTAGLPTLAVRVPAHPLMRE 132 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+ PLA PSAN S +S T+ H+L ++ I ++DGG GLESTIV ++ + Sbjct: 133 LLTLAEAPLAAPSANVSESVSPTSPGHVLK-TLDGRIDAVLDGGECIAGLESTIVALRGD 191 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246 +LRPG + E L A+ E T ++PG L HY+P VRL A+ Sbjct: 192 GAWSLLRPGPIAKEALIEALGAE---PSGTTEGVEAPGQLARHYSPGKPVRLGAVEAAED 248 Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306 E L+ FGN +LS +G EAA L+ + +S + IA + IP+ G Sbjct: 249 EFLLGFGNTAGD--------WSLSDSGDPAEAAARLYAGLHRGAESDKARIAVAPIPDEG 300 Query: 307 LGIAINNRLERAAA 320 LG AIN+RL RAAA Sbjct: 301 LGAAINDRLRRAAA 314 >gi|171696344|ref|XP_001913096.1| hypothetical protein [Podospora anserina S mat+] gi|170948414|emb|CAP60578.1| unnamed protein product [Podospora anserina S mat+] Length = 413 Score = 313 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 109/344 (31%), Positives = 166/344 (48%), Gaps = 49/344 (14%) Query: 24 PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHL 83 P+A PTETVYGL D+ + TA++ +Y K RP+ NPLI HVSD+SM+ +++ + L Sbjct: 68 PVAFPTETVYGLGADATSSTAVKGIYTAKGRPSDNPLIVHVSDLSMLSTLSTIPEIYHEL 127 Query: 84 AKLFWPGPLTLVLDLLSTTD-IHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSAN 141 FWPGPLT++L + ++ + P TA L T R+P + LI+ G PLA PSAN Sbjct: 128 ISKFWPGPLTILLPVPTSGQLLAPEVTAGLTTFGARMPDSPLARALIQLVGKPLAAPSAN 187 Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIET 201 S + S T H+L + +I LI+DGG +G+EST+V+ C V +LRPGG+ IE Sbjct: 188 ASTRPSPTKAVHVL-EDLEGKIELILDGGDCAVGVESTVVDGLCNPPV-VLRPGGVGIEE 245 Query: 202 LKRAISVE-------LEYCVDETSTPQSPGMLKSHYAPRSQVRLRA-------------- 240 +++ E V E P++PGM HY+PR++V L Sbjct: 246 IRQVKGWEGVVKGYKDRSEVGEGHKPRAPGMKYKHYSPRARVVLFEGHKPVNVGKELEGG 305 Query: 241 -----------------------IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKE 277 I +R G++ + + L++ +K Sbjct: 306 GQKKVGVIRTGEWEGLAGETEGRIESEEGGFAVRQGSLRDEEGKELATVLDVDLGRDVKG 365 Query: 278 AAFNLFNYMKIADDSGASSIAFSSIPN-HGLGIAINNRLERAAA 320 A LF ++ D GA I + + + A+ NRL +AA+ Sbjct: 366 VAHGLFAALRELDRLGADIIFVEGVSDGDDIAAAVMNRLRKAAS 409 >gi|169335782|ref|ZP_02862975.1| hypothetical protein ANASTE_02207 [Anaerofustis stercorihominis DSM 17244] gi|169258520|gb|EDS72486.1| hypothetical protein ANASTE_02207 [Anaerofustis stercorihominis DSM 17244] Length = 340 Score = 313 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 99/336 (29%), Positives = 177/336 (52%), Gaps = 20/336 (5%) Query: 2 QIMSITDSNALRK----ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 +I +T + L + A ++AG + PTETVYGL ++ + A++++++ K RP+ Sbjct: 4 KIYDLTKDDNLTEIFSDAASVINAGGTVVFPTETVYGLGANAYDDEAVKKIFKAKNRPSD 63 Query: 58 NPLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 NPLI H+SD+ M+ + + + L F+PGPLTL++ ++ + + L T Sbjct: 64 NPLIVHISDLDMIDDLVTCISDDARKLMSKFFPGPLTLIM--KKSSKVPNSVSNGLDTVG 121 Query: 117 FRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R+P I+ G P+A PSAN S + SITN K+++ + ++ +I+ S IG Sbjct: 122 IRMPSDKEANGFIKACGVPIAAPSANISKRPSITNKKYLV-EELSGKVDMILCSKNSSIG 180 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL-EYCVDETSTPQSPGMLKSHYAPRS 234 LEST+++V +K V++LRPG + E +++ I ++ Y ++ P+SPGM HY P++ Sbjct: 181 LESTVLDVSSDK-VKLLRPGKISAEDIEKVIGKKVYGYNGEDALLPKSPGMKYEHYKPKT 239 Query: 235 QVRL------RAIHVNPREALIRFGNVPIKNIENAI--ISLNLSKTG-KLKEAAFNLFNY 285 +V + I+ G + + NI I + L G + +A+ NL+ Sbjct: 240 KVVVLNGNDKSIINYLNDIKADDAGFIGLDNITQKIGNKKIKLKSFGKDISDASRNLYYL 299 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 ++ D I ++ + G+G+A NRL +AA+ Sbjct: 300 LREMDSENLDIIYVQAMDSRGIGLAYMNRLLKAASG 335 >gi|189499461|ref|YP_001958931.1| Sua5/YciO/YrdC/YwlC family protein [Chlorobium phaeobacteroides BS1] gi|189494902|gb|ACE03450.1| Sua5/YciO/YrdC/YwlC family protein [Chlorobium phaeobacteroides BS1] Length = 318 Score = 313 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 110/322 (34%), Positives = 169/322 (52%), Gaps = 12/322 (3%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 MQ + +T S + A +++ G +A PTETVYGL D + AI ++Y K RP NPL Sbjct: 1 MQTI-VTQSVGV--AATWINRGEIVAFPTETVYGLGADITSDAAIEKIYAAKGRPPDNPL 57 Query: 61 ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I H+ + +++ AS P S L F+PGPLT++L+ ++ L TA L T R+ Sbjct: 58 IVHIHSLHQLQEVASDIPRSAESLIHHFFPGPLTVILN--KNPEVSQLVTAGLPTVGIRL 115 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P ++ + HP+A PSAN SG+ S T+ K + + +IP ++ G S IGLES Sbjct: 116 PAHPVAQEFLRRCTHPVAAPSANISGRPSSTDWKAVY-DDLKGKIPCVLKGPQSTIGLES 174 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCVDETSTPQSPGMLKSHYAPRSQVR 237 TIV+ R+LR G + +E+L+ + + ++T +P+SPG+ HY+P +Q+ Sbjct: 175 TIVDCSV-HPPRLLRSGAISLESLRNVVPQIRAGSSNEKTHSPKSPGLKYPHYSPSAQII 233 Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297 L P E + I I + K +E AF LF++ + D G S I Sbjct: 234 LCEEGYPPIERETNSAWIGISQQPEGIAKTAICK--NPEEYAFRLFSFFRECDREGISVI 291 Query: 298 AFSSIPNHGLGIAINNRLERAA 319 P G+G+AI +RL+RAA Sbjct: 292 FCEMPPADGIGLAIRDRLQRAA 313 >gi|190345038|gb|EDK36848.2| hypothetical protein PGUG_00946 [Meyerozyma guilliermondii ATCC 6260] Length = 403 Score = 313 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 108/351 (30%), Positives = 169/351 (48%), Gaps = 36/351 (10%) Query: 1 MQIMSITDSNALRKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 ++I L A + L I PTETVYGL + + +++ +Y+ K RPA NP Sbjct: 50 LEISDPVTKKNLETAAKVLTTTHDVIGFPTETVYGLGGSALSDESVKSIYKAKNRPADNP 109 Query: 60 LICHVSDISMVKK-----HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT 114 LI HVS IS +K+ + + + L FWPGPLT++L + ++ I TA T Sbjct: 110 LIVHVSSISQLKRKILPPNYQIPKVYESLIHKFWPGPLTILLPVHESSPISKFVTAGQST 169 Query: 115 ACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173 R+P + LI PLA PSAN S + S T H+ + + IP I+DGG Sbjct: 170 FAVRIPQHPVARALIALSDTPLAAPSANASTRPSPTIASHVYND-LQGRIPYILDGGSCD 228 Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS------VELEYCVDETSTPQSPGMLK 227 G+EST+V+ + + +LRPGG+ +E +K V + +T ++PGM Sbjct: 229 FGVESTVVDGLVDPPM-LLRPGGVSLEEIKSVGGEPWKDVVVAKKTAGKTEAVRTPGMKY 287 Query: 228 SHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAIISL-------NLSKTGKLKE--- 277 HY+P ++V L + +EA+ + + N+++ I+L +S T KE Sbjct: 288 RHYSPTARVVLFVNCGDGKEAIDNY--ISSHNLQDCKIALLKSRHFVGISSTSANKESID 345 Query: 278 ---------AAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 + NLF Y++ D++G I I G+A+ NRL +AA Sbjct: 346 RELGTDGHTISHNLFRYLREVDETGVDMIFVEGIEETNEGLAVMNRLSKAA 396 >gi|294507611|ref|YP_003571669.1| SUA5 protein [Salinibacter ruber M8] gi|294343940|emb|CBH24718.1| SUA5 protein [Salinibacter ruber M8] Length = 412 Score = 313 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 109/309 (35%), Positives = 163/309 (52%), Gaps = 7/309 (2%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 +A + L G +A PTETVYGL D+ P A+RR++E K RPA NPLI H+ + + Sbjct: 108 EAADRLRRGELVAFPTETVYGLGADAFQPDAVRRIFEAKGRPADNPLIVHLRRRDQIGQV 167 Query: 74 -ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETY 131 A V ++ HL F PGPLTL+L D+ + TA L+T RVP T+ +E Sbjct: 168 AARVPSVAQHLLDAFAPGPLTLILP--KHEDLPSVVTAGLETVGVRVPRLPLTQSFLEAC 225 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 P+ PSANRSG+ S T+ + + + I I+ GG + G+EST+V+ + + Sbjct: 226 DTPVPAPSANRSGRPSPTSWEAV-EHDLAGRIDCILQGGRTDAGVESTVVDCTTD-PATV 283 Query: 192 LRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIR 251 LRPG + +E+L+RA+ D P+SPG HYAP +QVRL + + R Sbjct: 284 LRPGAVSVESLRRALGAVQVPSSDADEAPRSPGTRHRHYAPSAQVRLVE-DPSEAVSGDR 342 Query: 252 FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAI 311 V + + + +K A +LF+ + D++ I ++P +GLG A+ Sbjct: 343 HAYVGLDVPPHPDALGAVYVEESVKAYAHDLFHIFRTCDENEVEVIYAQTVPPNGLGRAL 402 Query: 312 NNRLERAAA 320 N+RL RAAA Sbjct: 403 NDRLRRAAA 411 >gi|149174845|ref|ZP_01853469.1| sua5 related protein [Planctomyces maris DSM 8797] gi|148846182|gb|EDL60521.1| sua5 related protein [Planctomyces maris DSM 8797] Length = 325 Score = 313 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 116/329 (35%), Positives = 173/329 (52%), Gaps = 17/329 (5%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 M S ++ A + G +A TETVYGL ++ NP A+ +++ +K+RP +PLI H Sbjct: 1 MKCEISQNIQAAANLIRLGELVAFATETVYGLGANALNPEAVAQIFAVKQRPHFDPLIVH 60 Query: 64 VSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 ++ + + + LA FWPGPLTLVL + L T+ L + R+P Sbjct: 61 IASTGQLDELTTEFSSTAEKLASTFWPGPLTLVLP--KKKVVPDLVTSGLDSVAIRIPAH 118 Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 +KL+E P+A PSAN+ G++S T + + + EI LI+DGG +G+EST++ Sbjct: 119 PVARKLLEITQLPIAAPSANKFGRLSPTRAVDV-AEQLGDEIKLILDGGPCTVGVESTVI 177 Query: 182 NVQCEKKVRILRPGGLEIETLKRAIS-VELEYCVD--ETSTPQSPGMLKSHYAPRSQVRL 238 ++ V +LRPGG+ +E ++ I + L D E ++P SPGML HYAP +++ + Sbjct: 178 QCLGDQPV-LLRPGGISLEEIQACIGEIRLAELEDYAEANSPVSPGMLPKHYAPSTRLII 236 Query: 239 RAIHVNPREALIRFGNV---PIKNIENAIISLN----LSKTGKLKEAAFNLFNYMKIADD 291 H A G + P+K+ E LS TG LK AA N F ++ D Sbjct: 237 -VDHPEQLPAAGSLGVLSLYPLKDTEFRDCQFTVQQILSPTGDLKMAAANFFAALRKLDA 295 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320 +G I +P GLG INNRLERAAA Sbjct: 296 AGIDQIVALRLPETGLGRTINNRLERAAA 324 >gi|165760855|pdb|2EQA|A Chain A, Crystal Structure Of The Hypothetical Sua5 Protein From Sulfolobus Tokodaii Length = 352 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 100/338 (29%), Positives = 156/338 (46%), Gaps = 23/338 (6%) Query: 2 QIMSIT----DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 QI+ I + + ++ A + + G +A PTETVYGL ++ + A ++++ K RP Sbjct: 3 QIIKIDPLNPEIDKIKIAADVIRNGGTVAFPTETVYGLGANAFDGNACLKIFQAKNRPVD 62 Query: 58 NPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 NPLI H++D + + + A + L +A++ WPGPLT VL T + TA L T Sbjct: 63 NPLIVHIADFNQLFEVAKDIPDKVLEIAQIVWPGPLTFVL--KKTERVPKEVTAGLDTVA 120 Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R P +LI G P+A PSAN + + S T + ++ + + +IIDGG + G Sbjct: 121 VRXPAHPIALQLIRESGVPIAAPSANLATRPSPTKAEDVIVD-LNGRVDVIIDGGHTFFG 179 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAIS----VELEYCVDETSTPQSPGMLKSHYA 231 +ESTI+NV E V +LRPG IE LK+ E E +PG HYA Sbjct: 180 VESTIINVTVEPPV-LLRPGPFTIEELKKLFGEIVIPEFAQGKKEAEIALAPGXKYKHYA 238 Query: 232 PRSQVRLRAIH---------VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNL 282 P +++ L ++ + + + + + L L E A NL Sbjct: 239 PNTRLLLVENRNIFKDVVSLLSKKYKVALLIPKELSKEFEGLQQIILGSDENLYEVARNL 298 Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 F+ + D P G+G AI NR +A+ Sbjct: 299 FDSFRELDKLNVDLGIXIGFPERGIGFAIXNRARKASG 336 >gi|305662754|ref|YP_003859042.1| translation factor SUA5 [Ignisphaera aggregans DSM 17230] gi|304377323|gb|ADM27162.1| translation factor SUA5 [Ignisphaera aggregans DSM 17230] Length = 359 Score = 313 bits (803), Expect = 3e-83, Method: Composition-based stats. Identities = 100/342 (29%), Positives = 159/342 (46%), Gaps = 31/342 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + + + C+ + G I PTETVYGL N A+R+++ K RP NPLI H+S I Sbjct: 15 DEDIIDRCCKAILNGAIIVFPTETVYGLGAYVYNVEAVRKIFIAKSRPMDNPLIVHISKI 74 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126 + + A V + +A+ FWPGPLT++L + + L T R+P Sbjct: 75 DQLYEIAIDVPEIVNIIAENFWPGPLTILL--RKNRSVPKEVSGGLDTVAVRMPAHPVAL 132 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 + P+A PSAN SG+ S T+ H+L +I+D G + G+ESTI+++ + Sbjct: 133 KLIDCSGPIAAPSANISGRPSPTSPYHVLVDMFG-RADIILDAGETFFGVESTIIDILSD 191 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCV-----DETSTPQSPGMLKSHYAPRSQVRLRAI 241 ++LRPG + IE ++ ++ +E V E+ +PGM HYAP++ + + Sbjct: 192 -PPKLLRPGAMPIEKIEEVLNKRIEIPVFALGYKESEKALAPGMKYKHYAPKTPLIIAKS 250 Query: 242 HV--NPREALIRFGNVP------------IKNIENAIISLN-------LSKTGKLKEAAF 280 + R + + + + E A I ++ L L E A Sbjct: 251 RDYTDCRRYAEKVKKIAMDLIARGRNIAVVASTETADIYIDLNIKIFVLGSRKNLFEIAK 310 Query: 281 NLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 NLF ++ D SG P G+GI I NRL +A+ R Sbjct: 311 NLFGVLRELDRSGVDMAIVEGYPEKGIGITIMNRLIKASGYR 352 >gi|302380242|ref|ZP_07268714.1| Sua5/YciO/YrdC/YwlC family protein [Finegoldia magna ACS-171-V-Col3] gi|302312025|gb|EFK94034.1| Sua5/YciO/YrdC/YwlC family protein [Finegoldia magna ACS-171-V-Col3] Length = 342 Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats. Identities = 103/327 (31%), Positives = 163/327 (49%), Gaps = 19/327 (5%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 AL KA E + G +A PTETVYGL + + A ++++++K+R NPLI HV++ M Sbjct: 15 KALEKAAELIKNGSVVAFPTETVYGLGANGLDEEACKKIFDVKRRKRDNPLILHVTNEDM 74 Query: 70 VKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 VK + + L WPGPLT++ + ++ + + T R P + L Sbjct: 75 VKNLSSEITEDQKKLMDNLWPGPLTIIF--KKSDKVNDVVSCGGDTVAIRNPSDEIARFL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I+ G P+A PSAN+SG+ S TN + + S + EI +I+DGG IG+EST+V++ EK Sbjct: 133 IDKSGCPIAAPSANKSGRPSPTNAQDVYSD-MQDEIEMILDGGSCNIGIESTVVDLT-EK 190 Query: 188 KVRILRPGGLEIETLKRAIS--VELEYCVDETSTPQSPGMLKSHYAPRSQVR-----LRA 240 ILRPG E L+ + V + +D + P+SPG HYAP++++ + Sbjct: 191 PYTILRPGFYIKEDLEEYLDEVVYDKSLIDSNTIPKSPGQKYKHYAPKTKLIVIKGNMDN 250 Query: 241 IHVNPREALIRFGNVPIKNIENAIISLN------LSKTGKLKEAAFNLFNYMKIADDSGA 294 I I G V E ++N +SK A N+F Y++ D Sbjct: 251 IQNYVDSLGINTGEVGFILTEETAKNVNFENVKIISKRNDYLNFAHNIFTYLRELDKFNY 310 Query: 295 SSIAFSSIPNHGLGIAINNRLERAAAP 321 + + +GI+I NRL+++ A Sbjct: 311 KLLICEGVNEQKMGISIMNRLKKSCAN 337 >gi|289423366|ref|ZP_06425174.1| SUA5 protein [Peptostreptococcus anaerobius 653-L] gi|289156297|gb|EFD04954.1| SUA5 protein [Peptostreptococcus anaerobius 653-L] Length = 349 Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats. Identities = 98/337 (29%), Positives = 162/337 (48%), Gaps = 25/337 (7%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 D + + + + L G + PTETVYGL ++ + A +++YE K RP+ NPL+ HV D Sbjct: 14 IDQDIIEEFAKMLAEGKTVIFPTETVYGLGANALDEKAAQKIYEAKGRPSDNPLLVHVCD 73 Query: 67 ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFT 124 V VD + L FWPGPLT+V I ++ L T R+P Sbjct: 74 KEDVYDLVEYVDDKAKILIDKFWPGPLTIVFKKKPI--IPDRTSGGLDTVAIRMPSDEIA 131 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 +++I G P+A PSAN SG+ S T HI+ + + I+ G G+ESTIV+V Sbjct: 132 RRIIRAAGVPIAAPSANISGRPSPTRPDHIIRD-MTGRVDGILAGAPCTYGVESTIVDVS 190 Query: 185 CEKKVRILRPGGLEIETLKRAIS-VELEYCV---DETSTPQSPGMLKSHYAPRSQVRLRA 240 + V +LRPG + +E + + L+ + D+ ++PGM +HY+PR++V + Sbjct: 191 GDYPV-VLRPGSVTLEMIAGVLGDARLDPSILNKDDNIKAKAPGMKYTHYSPRAEVYIVD 249 Query: 241 IHVNPREALIR--FGNVPIKNIENAIISLNLS------------KTGKLKE-AAFNLFNY 285 + + I+ G + ++ +++ G+ +E AA LF+ Sbjct: 250 LKGDDFVDKIKELVGQNADMGKKTGLMCMDIDMDRFDGVDIEIFSLGQTEEIAAKRLFDG 309 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 + D G I + +G+AI NRL+++A R Sbjct: 310 LIDLDKRGVDVIYSVAFEEKNVGVAIMNRLKKSAGYR 346 >gi|260888151|ref|ZP_05899414.1| SUA5 protein [Selenomonas sputigena ATCC 35185] gi|260862180|gb|EEX76680.1| SUA5 protein [Selenomonas sputigena ATCC 35185] Length = 377 Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats. Identities = 115/372 (30%), Positives = 171/372 (45%), Gaps = 56/372 (15%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +++ T + A+ +A L AG +A PTETVYGL + + A ++YE K RP+ NPLI Sbjct: 7 KVLPPT-AAAIEEAVHLLRAGEVVAFPTETVYGLGANGFDAAACAKIYEAKGRPSDNPLI 65 Query: 62 CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 H++ +M+ + A V ++ HL F PGPLTLVL + + T L T R+P Sbjct: 66 LHIAHRAMLDEVALDVPEMAEHLLAAFAPGPLTLVLRRCAA--VPDRITGGLATVGVRMP 123 Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 LI G PLA PSAN SG+ S T + +L + IPLI+DGG + G+EST Sbjct: 124 ENDAALALIRAAGFPLAAPSANTSGRPSPTTAETVL-EDLAGRIPLILDGGPCRFGVEST 182 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCVDE---------------------- 216 IV+V E V ILRPG + E L+ ++ V L+ + Sbjct: 183 IVDVTGEAAV-ILRPGAITREMLEEVVADVRLDPGLAAQERAAQMSVGAMCPAAANSAEA 241 Query: 217 ---------TSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAII-- 265 + P++PGM +HYAPR+ + L A A R +I Sbjct: 242 SETAGMHTVAAAPRAPGMKYTHYAPRAPLTLLAAPPAALPAAFRAALAEAAGKSVGLIVT 301 Query: 266 ---------------SLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIA 310 + L ++ A +L+ ++ D+ I ++ GLG+A Sbjct: 302 DETAAALAGEAEEDFVVRLGARKDVRSIAAHLYEALRAFDEKKVDFILGEALDESGLGLA 361 Query: 311 INNRLERAAAPR 322 I NRL++AA R Sbjct: 362 IMNRLKKAAGYR 373 >gi|304407777|ref|ZP_07389428.1| Sua5/YciO/YrdC/YwlC family protein [Paenibacillus curdlanolyticus YK9] gi|304343260|gb|EFM09103.1| Sua5/YciO/YrdC/YwlC family protein [Paenibacillus curdlanolyticus YK9] Length = 385 Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats. Identities = 114/351 (32%), Positives = 161/351 (45%), Gaps = 49/351 (13%) Query: 18 FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77 L G +A PTETVYGL D+R +A+ ++ K RP+ NPLI H++D + ++ Sbjct: 31 LLRTGGTVAFPTETVYGLGADARQTSAVENVFVAKGRPSDNPLIVHIADEAQLRTLVKPY 90 Query: 78 -PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPL 135 L + FWPGPLTLVL L + P TA L T R+P +LI G P+ Sbjct: 91 GDTERALMRRFWPGPLTLVLPALEGA-VSPRVTAGLDTVAVRMPDHAVALRLIAESGCPV 149 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 A PSANRSG+ S T +H+ + I I+DGG + +GLEST+V V+ VRILRPG Sbjct: 150 AAPSANRSGRPSPTVAEHV-REDLNGRIDGIVDGGPTGVGLESTVVQVEAPGVVRILRPG 208 Query: 196 GLEIETLKRAI-------SVELEYCVDETSTP-----------------------QSPGM 225 G+ L+ A S+E D T P +SPGM Sbjct: 209 GITPVQLREAAPTVLLDESLEALERKDATMVPQERAVVSDSPAVGTATAVPAAAPRSPGM 268 Query: 226 LKSHYAPRSQVRLRAIHVNPREALIRFGNVPI---------------KNIENAIISLNLS 270 +HYAPR ++L + A I +A ++ Sbjct: 269 KYTHYAPRGSMQLVHGEPDDVRAYITKALQAAAAEGEITGVLTYDEHAASYHADAVISCG 328 Query: 271 KTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 KL+ AA L+ ++ D G I + + G+G+A+ NRLE+AA Sbjct: 329 SLMKLETAAQGLYAALREFDARGVQRIWAEACSSDGIGLALMNRLEKAAGH 379 >gi|315500026|ref|YP_004088829.1| sua5/ycio/yrdc/ywlc family protein [Asticcacaulis excentricus CB 48] gi|315418038|gb|ADU14678.1| Sua5/YciO/YrdC/YwlC family protein [Asticcacaulis excentricus CB 48] Length = 309 Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats. Identities = 117/310 (37%), Positives = 169/310 (54%), Gaps = 8/310 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + A L G I +PTETVYGL + +PTA+ +++E K RP NPLI HV+ + + Sbjct: 4 VADAIAALGRGELIHLPTETVYGLGARADDPTAVAKVFEAKGRPRFNPLIVHVASLEAAE 63 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 D + LA+ FWPGPLTLV+ + T + L+ A L + RVP + ++E Sbjct: 64 AIGVFDDRARDLAQAFWPGPLTLVVPVRDTQKVCDLARAGLDSVAIRVPSHPLARAILEG 123 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 + + PSANRSG+ S T LS + + +DGG ++GLES++V++ E VR Sbjct: 124 FAGGVVAPSANRSGRPSPTRFADALSET-GGFVGASVDGGDCQVGLESSVVSLLGE--VR 180 Query: 191 ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALI 250 LRPG + ++ + D T +SPG L HYAP + V + + + Sbjct: 181 YLRPGAVTRAEVEAVVG---PLADDATEGHRSPGRLSLHYAPDAPVNINVENPPADCVYL 237 Query: 251 RFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIA 310 FG V K ++ A I LNLS G+L EAA NLF Y++ AD + I + IP+ GLG A Sbjct: 238 AFGPVD-KAVDFAGIILNLSPMGRLSEAAANLFAYLREADAHKPARICVAPIPSDGLGEA 296 Query: 311 INNRLERAAA 320 IN+RL+RAA Sbjct: 297 INDRLKRAAG 306 >gi|325967731|ref|YP_004243923.1| Sua5/YciO/YrdC/YwlC family protein [Vulcanisaeta moutnovskia 768-28] gi|323706934|gb|ADY00421.1| Sua5/YciO/YrdC/YwlC family protein [Vulcanisaeta moutnovskia 768-28] Length = 375 Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats. Identities = 102/343 (29%), Positives = 162/343 (47%), Gaps = 33/343 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D++ +++A ++ G +A PTETVYGL D+ N A +++ K RP NPLI H+SDI Sbjct: 28 DNSIIKEASNYIRNGYLVAFPTETVYGLGADTFNGEACLKIFRAKGRPPDNPLIVHISDI 87 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + + K A + + + + WPGPLTL+L + DI T T R P Sbjct: 88 NELDKVAIDIPEIIFPVIRKAWPGPLTLILP--KSPDIPKEVTGGRNTVAVRSPAHPVAL 145 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLI-IDGGISKIGLESTIVNVQ 184 LI++ G P+A PSAN+SG+ S T +HI+ +I +I +D G + G+ESTI++V Sbjct: 146 ALIKSSGTPIAAPSANKSGRPSPTLAEHIIEDYANDDIEMILLDAGPTFFGVESTIIDVT 205 Query: 185 CEKKVRILRPGGLEIETLKRAISVEL-----EYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 V +LRPG IE LK +V++ + E T +PGM HYAP +++ + Sbjct: 206 RNPPV-LLRPGPFTIEELKSLFNVDIVVPEFARGLGEADTALAPGMRYRHYAPHTRLIIV 264 Query: 240 AIHVNPR-------------EALIRFGNVPIKNIENAIISLN---------LSKTGKLKE 277 + + ++ + K N ++ L Sbjct: 265 ECNDHDSLIKLLHDTLIDYLNKKLKVALLITKETANQLMKYPEINELPIIILGYRENTYT 324 Query: 278 AAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 A +LF+ ++ D I G+G+AI NRL +A+ Sbjct: 325 IAASLFDSLRNLDKINVDIGIAEGIEERGIGLAIMNRLRKASG 367 >gi|330840018|ref|YP_004414598.1| Sua5/YciO/YrdC/YwlC family protein [Selenomonas sputigena ATCC 35185] gi|329747782|gb|AEC01139.1| Sua5/YciO/YrdC/YwlC family protein [Selenomonas sputigena ATCC 35185] Length = 375 Score = 312 bits (801), Expect = 3e-83, Method: Composition-based stats. Identities = 115/372 (30%), Positives = 171/372 (45%), Gaps = 56/372 (15%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +++ T + A+ +A L AG +A PTETVYGL + + A ++YE K RP+ NPLI Sbjct: 5 KVLPPT-AAAIEEAVHLLRAGEVVAFPTETVYGLGANGFDAAACAKIYEAKGRPSDNPLI 63 Query: 62 CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 H++ +M+ + A V ++ HL F PGPLTLVL + + T L T R+P Sbjct: 64 LHIAHRAMLDEVALDVPEMAEHLLAAFAPGPLTLVLRRCAA--VPDRITGGLATVGVRMP 121 Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 LI G PLA PSAN SG+ S T + +L + IPLI+DGG + G+EST Sbjct: 122 ENDAALALIRAAGFPLAAPSANTSGRPSPTTAETVL-EDLAGRIPLILDGGPCRFGVEST 180 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCVDE---------------------- 216 IV+V E V ILRPG + E L+ ++ V L+ + Sbjct: 181 IVDVTGEAAV-ILRPGAITREMLEEVVADVRLDPGLAAQERAAQMSVGAMCPAAANSAEA 239 Query: 217 ---------TSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAII-- 265 + P++PGM +HYAPR+ + L A A R +I Sbjct: 240 SETAGMHTVAAAPRAPGMKYTHYAPRAPLTLLAAPPAALPAAFRAALAEAAGKSVGLIVT 299 Query: 266 ---------------SLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIA 310 + L ++ A +L+ ++ D+ I ++ GLG+A Sbjct: 300 DETAAALAGEAEEDFVVRLGARKDVRSIAAHLYEALRAFDEKKVDFILGEALDESGLGLA 359 Query: 311 INNRLERAAAPR 322 I NRL++AA R Sbjct: 360 IMNRLKKAAGYR 371 >gi|303234993|ref|ZP_07321617.1| Sua5/YciO/YrdC/YwlC family protein [Finegoldia magna BVS033A4] gi|302493848|gb|EFL53630.1| Sua5/YciO/YrdC/YwlC family protein [Finegoldia magna BVS033A4] Length = 342 Score = 312 bits (801), Expect = 4e-83, Method: Composition-based stats. Identities = 101/326 (30%), Positives = 162/326 (49%), Gaps = 19/326 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 AL KA E + G +A PTETVYGL + + A ++++++K+R NPLI HV++ MV Sbjct: 16 ALEKAAELIKNGSVVAFPTETVYGLGANGLDEEACKKIFDVKRRKRDNPLILHVTNEDMV 75 Query: 71 KKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLI 128 K + + L WPGPLT++ + ++ + + T R P + LI Sbjct: 76 KNLSSEITEDQKKLMDNLWPGPLTIIF--KKSDKVNDVVSCGGDTVAIRNPSDEIARFLI 133 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 + G P+A PSAN+SG+ S TN + + S + EI +I+DGG IG+EST+V++ EK Sbjct: 134 DKSGCPIAAPSANKSGRPSPTNAQDVYSD-MQDEIEMILDGGSCNIGIESTVVDLT-EKP 191 Query: 189 VRILRPGGLEIETLKRAIS--VELEYCVDETSTPQSPGMLKSHYAPRSQVR-----LRAI 241 ILRPG E L+ + V + +D + P+SPG HYAP++++ + I Sbjct: 192 YTILRPGFYTKEDLEEYLDEVVYDKSLIDSNTIPKSPGQKYKHYAPKTKLIVIKGNMDNI 251 Query: 242 HVNPREALIRFGNVPIKNIENAIISLN------LSKTGKLKEAAFNLFNYMKIADDSGAS 295 I + E ++N +SK A N+F Y++ D Sbjct: 252 QNYVDSLGINTDEIGFILTEETAKNVNFENVKIISKRNDYLNFAHNIFTYLRELDKFNYK 311 Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321 + + +GI+I NRL+++ A Sbjct: 312 LLICEGVNEQKMGISIMNRLKKSCAN 337 >gi|169824779|ref|YP_001692390.1| translation factor [Finegoldia magna ATCC 29328] gi|167831584|dbj|BAG08500.1| translation factor [Finegoldia magna ATCC 29328] Length = 342 Score = 312 bits (801), Expect = 4e-83, Method: Composition-based stats. Identities = 100/327 (30%), Positives = 162/327 (49%), Gaps = 19/327 (5%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +L KA E + G +A PTETVYGL + + A ++++++K+R NPLI HV++ M Sbjct: 15 KSLEKAAELIKNGSVVAFPTETVYGLGANGLDEEACKKIFDVKRRKRDNPLILHVTNEDM 74 Query: 70 VKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 VK + + L WPGPLT++ + ++ + + T R P + L Sbjct: 75 VKNLSSEITEDQKKLMDNLWPGPLTIIF--KKSDKVNDVVSCGGDTVAIRNPSDEIARFL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I+ G P+A PSAN+SG+ S TN + + S + EI +I+DGG IG+EST+V++ EK Sbjct: 133 IDKSGCPIAAPSANKSGRPSPTNAQDVYSD-MQGEIEMILDGGSCNIGIESTVVDLT-EK 190 Query: 188 KVRILRPGGLEIETLKRAIS--VELEYCVDETSTPQSPGMLKSHYAPRSQVR-----LRA 240 ILRPG E L+ + V + +D + P+SPG HYAP++++ + Sbjct: 191 PYTILRPGFYTKEDLEEYLDEVVYDKSLIDSNTIPKSPGQKYKHYAPKTKLIVIKGNMDN 250 Query: 241 IHVNPREALIRFGNVPIKNIENAIISLN------LSKTGKLKEAAFNLFNYMKIADDSGA 294 I I + E ++N +SK A N+F Y++ D Sbjct: 251 IQNYVDNLGINTDEIGFILTEETAENVNFENVKIISKRNDYLNFAHNIFTYLRELDKFNY 310 Query: 295 SSIAFSSIPNHGLGIAINNRLERAAAP 321 + + +GI+I NRL+++ A Sbjct: 311 KLLICEGVNEQKMGISIMNRLKKSCAN 337 >gi|159040867|ref|YP_001540119.1| Sua5/YciO/YrdC/YwlC family protein [Caldivirga maquilingensis IC-167] gi|157919702|gb|ABW01129.1| Sua5/YciO/YrdC/YwlC family protein [Caldivirga maquilingensis IC-167] Length = 358 Score = 312 bits (800), Expect = 5e-83, Method: Composition-based stats. Identities = 97/337 (28%), Positives = 153/337 (45%), Gaps = 27/337 (8%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D +R A + + G +A PTETVYGL + N AIRR+Y +K RP NP I H+S Sbjct: 19 DMALIRIAADVILKGGLVAFPTETVYGLGASTYNDDAIRRIYAVKNRPMDNPSIVHISSF 78 Query: 68 SMVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126 + + + A P L K+ WPGPLT++L ++ I +++ L T R+P Sbjct: 79 NQLYEVAEDIPSELEERLKVAWPGPLTVIL--RKSSRISEVASCGLSTVAVRMPAHPVAL 136 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 + P++ PSAN SG+ S T +H++ + +I LIIDGG + G+ESTI++ + Sbjct: 137 ALIRESTPISAPSANISGKPSPTRAEHVIKD-LWGKIDLIIDGGETFFGVESTIIDYTKK 195 Query: 187 KKVRILRPGGLEIETLKRAIS----VELEYCVDETSTPQSPGMLKSHYAPRSQVRL---- 238 V + RPG +E L+R E + + +PGM HYAP + + Sbjct: 196 PPV-LYRPGPFTVEELRRIFGEIKVPEQALGLGQFKEALAPGMKYRHYAPDKPLIVTECS 254 Query: 239 --------------RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFN 284 + R ++ ++ + G L A NLF+ Sbjct: 255 SLDGLVKLTLDLASDEVKRGKRVVVLCSSETCSTYVKAGFKVIEAGSRGNLYTVAKNLFH 314 Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 +++ D P G+G+AI NRL +A+ Sbjct: 315 SLRLIDSMDVDLAVAEGYPEVGIGLAIMNRLRKASGY 351 >gi|297588759|ref|ZP_06947402.1| Sua5/YciO/YrdC/YwlC family protein [Finegoldia magna ATCC 53516] gi|297574132|gb|EFH92853.1| Sua5/YciO/YrdC/YwlC family protein [Finegoldia magna ATCC 53516] Length = 342 Score = 312 bits (800), Expect = 5e-83, Method: Composition-based stats. Identities = 97/327 (29%), Positives = 166/327 (50%), Gaps = 19/327 (5%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +AL KA + + G +A PTETVYGL + + A ++++++K+R NPLI HV++ M Sbjct: 15 SALEKAADLIKNGSVVAFPTETVYGLGANGLDEEACKKIFDVKRRKRDNPLILHVTNEEM 74 Query: 70 VKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 V+ + + L WPGPLT++ + ++ + + T R P + L Sbjct: 75 VRNLSSEITEDQKKLMDNLWPGPLTIIF--KKSDKVNDVVSCGGNTVAIRNPSDEIARFL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I+ P+A PSAN+SG+ S TN + + S + EI +I+DGG IG+EST+V++ EK Sbjct: 133 IDKSDCPIAAPSANKSGRPSPTNAQDVYSD-MQGEIEMILDGGSCNIGIESTVVDLT-EK 190 Query: 188 KVRILRPGGLEIETLKRAIS--VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245 ILRPG E L+ + V + +D + P+SPG HYAP++++ + +++ Sbjct: 191 PYTILRPGFYTKEDLEEYLDEVVYDKSLIDSKTIPKSPGQKYKHYAPKTKLIVIKGNMDN 250 Query: 246 REALIRFGNVPIKNI-----ENAIISLN------LSKTGKLKEAAFNLFNYMKIADDSGA 294 + + + I E ++N +SK A N+F Y++ D Sbjct: 251 IQNYVDSLEINTDEIGFILTEETAQNVNFKNVKIISKRNDYLNFAHNIFAYLRELDKLNY 310 Query: 295 SSIAFSSIPNHGLGIAINNRLERAAAP 321 + + +GI+I NRL+++ A Sbjct: 311 KLLICEGVNEQKMGISIMNRLKKSCAN 337 >gi|312897941|ref|ZP_07757354.1| Sua5/YciO/YrdC/YwlC family protein [Megasphaera micronuciformis F0359] gi|310620975|gb|EFQ04522.1| Sua5/YciO/YrdC/YwlC family protein [Megasphaera micronuciformis F0359] Length = 350 Score = 312 bits (800), Expect = 6e-83, Method: Composition-based stats. Identities = 102/333 (30%), Positives = 149/333 (44%), Gaps = 25/333 (7%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D N L +A + G + PTETVYG+ + + A R +Y K RP+ NPLI V D Sbjct: 15 DKNVLEEAGRLIRQGELVIFPTETVYGIGANGLDAAACRAIYTAKGRPSDNPLILTVPDK 74 Query: 68 SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TK 125 + V+ S + PL+ L + FWPGPLTLVL T + +T L T R P + Sbjct: 75 AGVEAVVSYLPPLAETLIEKFWPGPLTLVLPRKDT--VPDAATGGLDTVALRCPDHAGCR 132 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 + ++ G P+A PSAN SG+ S T + + +I+DGG +G+ESTIV V Sbjct: 133 EFLKAAGVPVAGPSANLSGRPSPTTASEAF-HDMEGRVAMILDGGSCTVGVESTIVEVL- 190 Query: 186 EKKVRILRPGGLEIETLKRAIS--VELEYCVDETSTPQSPGMLKSHYAPRSQVRLR---- 239 + V +LRPG + E L + V P++PGM HYAP + VR+ Sbjct: 191 DNVVTVLRPGAVTEEMLAEVAPYVTTDTHLVTGKGVPKAPGMKYRHYAPEAPVRVFVGSA 250 Query: 240 -------------AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYM 286 A + R + V K+ G E A L+ + Sbjct: 251 DQVSKAVGEVRTAAENDGKRLGYLLSREVIEKSEVTGKDVYCWGTHGNKTELAKELYRGL 310 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 D+ I + G+G A+ NR+++AA Sbjct: 311 LFFDEHPVDLIVAEGVETGGIGTAVMNRMKKAA 343 >gi|91218516|ref|ZP_01255455.1| Sua5/YciO/YrdC/YwlC [Psychroflexus torquis ATCC 700755] gi|91183347|gb|EAS69751.1| Sua5/YciO/YrdC/YwlC [Psychroflexus torquis ATCC 700755] Length = 318 Score = 311 bits (799), Expect = 7e-83, Method: Composition-based stats. Identities = 111/320 (34%), Positives = 177/320 (55%), Gaps = 18/320 (5%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S+ + KA E L+ +AIPTETVYGLA + + AIR+++++K+RP NPLI H+ I Sbjct: 5 SSDISKAIELLNKEDVVAIPTETVYGLAGNIYSEKAIRKIFQVKQRPLFNPLIVHIPSID 64 Query: 69 MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 ++K A P+ + LA+ FWPG LTL+L ++I + T T R+P T Sbjct: 65 QLEKVAREFPIKAQKLAEAFWPGSLTLILP--KKSNILEIVTGGKDTVGVRIPNHPVTLS 122 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L++ PLA PSAN +IS T+ H+ +P++++GG K G+ESTI+ + Sbjct: 123 LLKQLSFPLAAPSANPYNRISPTSSYHV-EGYFGNALPMVLEGGECKNGIESTIIGFENN 181 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVN-- 244 + + + R G + +E +++ I +++ +TP +PGML HYAP++++ L Sbjct: 182 EAI-LYRLGAISVEEIEKIIG-KIQIRNKSDTTPNAPGMLAKHYAPKTKMYLLDDIDEFI 239 Query: 245 -----PREALIRF-GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIA 298 + ++RF G + E+ I LSK+G LKEAA L++ + D+ I Sbjct: 240 ENNKSKKIGVLRFQGKLNTTRFEHIEI---LSKSGDLKEAASKLYSTLHKLDNLNLDIIV 296 Query: 299 FSSIPNHGLGIAINNRLERA 318 P+ GLG +IN+RLERA Sbjct: 297 AERFPDVGLGKSINDRLERA 316 >gi|227824239|ref|ZP_03989071.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|226904738|gb|EEH90656.1| conserved hypothetical protein [Acidaminococcus sp. D21] Length = 350 Score = 311 bits (798), Expect = 9e-83, Method: Composition-based stats. Identities = 100/322 (31%), Positives = 156/322 (48%), Gaps = 22/322 (6%) Query: 18 FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-V 76 + G +A PTETVYGL + + A R+++ K RPA NPLI H+++ ++ + Sbjct: 1 MIRKGEVVAFPTETVYGLGANGLDGMACRKIFAAKGRPADNPLILHIAEKEDMEALTKGL 60 Query: 77 DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPL 135 P++ L + FWPGP+TL++ + I + TA L T R P + LI G P+ Sbjct: 61 SPMAQALMEAFWPGPMTLIVP--KSDKIPDVVTAGLDTVAVRFPSHPVARDLIRAAGCPI 118 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 A PSAN+SG+ S T + +L + I ++DGG IG+ESTI++ + V ILRPG Sbjct: 119 AAPSANKSGKPSPTTAQDVLLD-MDGIIAGVLDGGACDIGVESTIIDTTGKDPV-ILRPG 176 Query: 196 GLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFG 253 G+ E +K A+ V + TP++PGM HYAP + + L + Sbjct: 177 GITREMIKMAMGRVALDPGLVKKGETPKAPGMKYRHYAPTAPMLLVEGPEASLGLIRLAI 236 Query: 254 NVPIKNIENAIISL-----NLSKTGK---------LKEAAFNLFNYMKIADDSGASSIAF 299 + +I+L + K G L+ A LF+ ++ D G I Sbjct: 237 MAEAHGLRTGVIALKATVDHFPKGGNFVIHNGGATLEAYAGTLFHDLRAFDSEGVDLILG 296 Query: 300 SSIPNHGLGIAINNRLERAAAP 321 + +G+AI NRL ++A Sbjct: 297 EGVREDQMGLAIMNRLRKSAGH 318 >gi|119871892|ref|YP_929899.1| Sua5/YciO/YrdC/YwlC family protein [Pyrobaculum islandicum DSM 4184] gi|119673300|gb|ABL87556.1| translation factor SUA5 [Pyrobaculum islandicum DSM 4184] Length = 349 Score = 311 bits (798), Expect = 9e-83, Method: Composition-based stats. Identities = 95/328 (28%), Positives = 161/328 (49%), Gaps = 17/328 (5%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D++ +R A E L G +A PTETVYGL + + ++++ K+RP NPLI HV + Sbjct: 12 DADVIRFAAEVLKRGGIVAAPTETVYGLFTHAYSDGGCAKVFKAKERPPDNPLIVHVDSV 71 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KK 126 M + A + + + + WPGP+TLV+ + TA L T R P Sbjct: 72 EMAAQIAYIPEEIVDVLRRIWPGPITLVMKSRGA--VSRCVTAGLDTVAVRAPAHPIPLA 129 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 +I+ P+A PSAN++G+ S T +H++ + E+ +IIDGG + G+ESTI++V + Sbjct: 130 IIKELEAPIAGPSANKAGRPSPTTAEHVV-EDLNGEVDVIIDGGPTFFGVESTIIDVTRK 188 Query: 187 KKVRILRPGGLEIETLKRAIS----VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242 + +LRPG +E L++ + + ET +PGM HYAP + + + Sbjct: 189 PPI-LLRPGPFTVEELEKYFGPVEIPPVARGLIETDVALAPGMKYKHYAPNTPLVIVHFD 247 Query: 243 VNPREALIRFGNVPIKNI------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296 ++ +R + + + NA + + + L E A NL+ ++ D Sbjct: 248 LSLAVETLRSKGLKVAVLCATGRCTNADVVIKMG--DDLYEVAKNLYRSLRELDRFSVDI 305 Query: 297 IAFSSIPNHGLGIAINNRLERAAAPRNQ 324 ++ G+G+AI NRL +A+ R Sbjct: 306 GVVPAVEETGIGLAIMNRLRKASGHREA 333 >gi|227499752|ref|ZP_03929852.1| Sua5/YciO/YrdC/YwlC family protein [Anaerococcus tetradius ATCC 35098] gi|227218138|gb|EEI83404.1| Sua5/YciO/YrdC/YwlC family protein [Anaerococcus tetradius ATCC 35098] Length = 349 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 100/334 (29%), Positives = 157/334 (47%), Gaps = 22/334 (6%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 D + KA +L G +AIPTETVYGL + + A +++ K RPA NPLI H+ Sbjct: 16 KNIDQEKIIKAANYLKEGKLVAIPTETVYGLGANGLDEKACVNIFKTKNRPADNPLILHI 75 Query: 65 SDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CG 122 S+I M+ V+ + L K WPGPLT++ + I + TA T R P Sbjct: 76 SNIDMLYNLVENVNDDAKKLMK-LWPGPLTMIF--KKSDLIPDVVTAKGDTVAVRFPVDE 132 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 + +IE P+A PSAN SG+ S TN + +IPLIIDGG IG+EST+++ Sbjct: 133 IARAIIEKANVPIAAPSANISGRPSPTNAYDCYYD-LNGKIPLIIDGGSCDIGIESTVID 191 Query: 183 VQCEKKVRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 + E ILRPG +E ++ I + VD+ P+SPG HYAP++++++ Sbjct: 192 M-SENPPTILRPGYYTLEMIREIIPEVRLDDALVDDNKIPKSPGQKYKHYAPKARMQVYV 250 Query: 241 IHVNPREALIRFGNVPIKNIENAIISL-------------NLSKTGKLKEAAFNLFNYMK 287 + + ++ + L + + LF ++ Sbjct: 251 GKGAADFIYKKARAYSNSGLHVGVLVFEEDMERFKDFDRISFGDRDDLSQMSHVLFTALR 310 Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 D G I + ++ LG +I NR++++AA Sbjct: 311 KMDKMGVDLILAEGVLDNNLGKSIMNRMKKSAAG 344 >gi|303228444|ref|ZP_07315277.1| Sua5/YciO/YrdC/YwlC family protein [Veillonella atypica ACS-134-V-Col7a] gi|302516946|gb|EFL58855.1| Sua5/YciO/YrdC/YwlC family protein [Veillonella atypica ACS-134-V-Col7a] Length = 344 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 105/345 (30%), Positives = 160/345 (46%), Gaps = 30/345 (8%) Query: 1 MQIMSITD--SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58 M+ IT+ L+ L G +AIPTETVYGL + + A+ ++Y K RP+ N Sbjct: 1 METKIITELTKENLQLVAYALRHGDVVAIPTETVYGLGANGLDADAMDKIYAAKGRPSDN 60 Query: 59 PLICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 PLI HV + +K P + L + FWPGPLT+ L + + +T L Sbjct: 61 PLILHVPNAESIKPLVKEIPETAKALIEAFWPGPLTITLP--KSDLVPDRATGGLARVAL 118 Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R P + ++E G P+A PSAN SG+ S T + + + IP I+D GI IG+ Sbjct: 119 RCPDHAVCRNILELAGVPIAAPSANISGRPSPTTAQSVY-DDMNGRIPYIVDAGICTIGV 177 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAIS--VELEYCVDETSTPQSPGMLKSHYAPRS 234 EST+V V+ + V ILRPGG+ E L++ + + + P++PGM HYAP + Sbjct: 178 ESTVVEVRDDG-VTILRPGGITKEMLEQVVDNVSYDPFLSSQNEAPKAPGMKYKHYAPDA 236 Query: 235 QVRLRAIHVNPREALIRFGNVPIKNIENAIISL------------------NLSKTGKLK 276 +R A NP++ F NV + L +G Sbjct: 237 PMR--AFIGNPKDVAETFSNVIREQETKRGAFLVSQETYDLLKDSVHGEFHVYGHSGDAV 294 Query: 277 EAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 A + + + ++ I + N GLG+A+ NR+E+A A Sbjct: 295 ALAHDFYKTLHHFNECDVDYILAEGVVNTGLGVAVMNRMEKACAG 339 >gi|83815217|ref|YP_445718.1| SUA5 protein [Salinibacter ruber DSM 13855] gi|83756611|gb|ABC44724.1| SUA5 protein [Salinibacter ruber DSM 13855] Length = 330 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 110/319 (34%), Positives = 168/319 (52%), Gaps = 7/319 (2%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 ++ T + + +A + L G +A PTETVYGL D+ P A+RR++E K RPA NPLI H Sbjct: 16 VATTRTTSPTEAADRLRRGELVAFPTETVYGLGADAFQPDAVRRIFEAKGRPADNPLIVH 75 Query: 64 VSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 + + + A V ++ HL F PGPLTL+L D+ + TA L+T RVP Sbjct: 76 LRRRDQIGQVAARVPSVAQHLLDAFAPGPLTLILP--KHEDLPSVVTAGLETVGVRVPRL 133 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 T+ +E P+ PSANRSG+ S T+ + + + I I+ GG + G+EST+V Sbjct: 134 PLTQSFLEACDTPVPAPSANRSGRPSPTSWEAV-EHDLAGRIDCILQGGRTDAGVESTVV 192 Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241 + + +LRPG + +E+L+RA+ D P+SPG HYAP +QVRL Sbjct: 193 DCTTD-PATVLRPGAVSVESLRRALGAVQVPSSDADEAPRSPGTRHRHYAPSAQVRLVE- 250 Query: 242 HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSS 301 + + R V + + + +K A +LF+ + D++ I + Sbjct: 251 DPSEAVSGDRHAYVGLDVPPHPDALGAVYVEESVKAYAHDLFHIFRTCDENEVEVIYAQT 310 Query: 302 IPNHGLGIAINNRLERAAA 320 +P +GLG A+N+RL RAAA Sbjct: 311 VPPNGLGRALNDRLRRAAA 329 >gi|145591558|ref|YP_001153560.1| Sua5/YciO/YrdC/YwlC family protein [Pyrobaculum arsenaticum DSM 13514] gi|145283326|gb|ABP50908.1| translation factor SUA5 [Pyrobaculum arsenaticum DSM 13514] Length = 358 Score = 310 bits (796), Expect = 1e-82, Method: Composition-based stats. Identities = 94/326 (28%), Positives = 152/326 (46%), Gaps = 13/326 (3%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + +R A L G +A PTETVYGL + ++++ K RP NPLI HV + Sbjct: 27 DPSVIRTAAGVLRNGGIVAAPTETVYGLFAHAYREDGCAKVFKAKGRPMDNPLIVHVDTV 86 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KK 126 M A + + + WPGP+T+V+ + TA L T R P Sbjct: 87 EMAMAVADIPNDVAEVLRRVWPGPITVVVPSRGV--VARCVTAGLPTVAVRAPAHPIPLS 144 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 +I+ G P+A PSAN++G+ S T H++ + E+ ++IDGG + G+ESTI++V Sbjct: 145 IIKELGAPIAGPSANKAGRPSPTTAGHVV-EDLDGEVDVVIDGGPTFFGVESTIIDVTKR 203 Query: 187 KKVRILRPGGLEIETLKRAIS----VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242 V +LRPG +E L++ + + E +PGM HYAP + + + Sbjct: 204 PPV-VLRPGPFTVEELEKLFGPVSVPPVARGLAEADVALAPGMKYRHYAPDTVLVIVHFD 262 Query: 243 VNPREALIRFGNVPIKNI----ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIA 298 + +R + + + + A + + L E A NL+ ++ D G Sbjct: 263 LAEAVQTLRARGLKVAVLCATGKCAEANYVIQMGDDLYEVARNLYKSLRDLDKLGVDIGV 322 Query: 299 FSSIPNHGLGIAINNRLERAAAPRNQ 324 +I G+G+AI NRL +A+ R Sbjct: 323 VPAIEERGVGLAIMNRLRKASGHREA 348 >gi|222098797|ref|YP_002532855.1| sua5/ycio/yrdc/ywlc family protein [Bacillus cereus Q1] gi|221242856|gb|ACM15566.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus Q1] Length = 298 Score = 310 bits (796), Expect = 1e-82, Method: Composition-based stats. Identities = 100/296 (33%), Positives = 150/296 (50%), Gaps = 19/296 (6%) Query: 41 NPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLL 99 N AI +++E K RP+ NPLI H+ S + + P++ L + FWPGPLT++L Sbjct: 2 NDEAIAKIFEAKGRPSDNPLIVHIGTKSQLDGIVKEIPPVAEKLMEHFWPGPLTIILPRK 61 Query: 100 STTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSS 158 I TA L T R+P LIE P+A PSANRSG+ S T H+ Sbjct: 62 EG--ISEKVTAGLHTVGVRMPDHPVALALIEEANVPVAAPSANRSGRPSPTLASHVY-ED 118 Query: 159 ICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCV-DE 216 + ++I I+DGG + +G+EST+++ ILRPGG+ E L+ I V L+ + DE Sbjct: 119 LNEKIAGIVDGGATGVGVESTVIDCTSAVP-TILRPGGITKEQLEAVIGTVSLDPALKDE 177 Query: 217 TSTPQSPGMLKSHYAPRSQV--------RLRAIHVNPREALIRFGNVPIKN---IENAII 265 P+SPGM +HYAP++ + ++ + +E + G + + I NA + Sbjct: 178 KEKPKSPGMKYTHYAPKAPLSIVEGSREFIQRLVDEKKEEGFKVGVLTTEEYHHIYNADV 237 Query: 266 SLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 L+ L A L++ ++ D S I S PN G+G AI NRL +AA Sbjct: 238 VLSCGVRSDLASVATKLYDVLRTFDASEVDVIFSESFPNEGIGNAIMNRLTKAAGH 293 >gi|47570467|ref|ZP_00241100.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus G9241] gi|47552863|gb|EAL11281.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus G9241] Length = 299 Score = 310 bits (796), Expect = 1e-82, Method: Composition-based stats. Identities = 99/302 (32%), Positives = 154/302 (50%), Gaps = 19/302 (6%) Query: 41 NPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLL 99 N AI +++E K RP+ NPLI H+ S + + P++ L + FWPGPLT++L Sbjct: 2 NDEAIAKIFEAKGRPSDNPLIVHIGTKSQLDGIVKEIPPVAEKLMEHFWPGPLTIILPRK 61 Query: 100 STTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSS 158 I TA L T R+P LIE P+A PSANRSG+ S T H+ Sbjct: 62 EG--ISERVTAGLNTVGVRMPDHPVALALIEEANVPVAAPSANRSGRPSPTLASHVY-ED 118 Query: 159 ICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCV-DE 216 + ++I I+DGG + +G+EST+++ ILRPGG+ E L+ I V L+ + DE Sbjct: 119 LNEKIAGIVDGGATGVGVESTVIDCTSAVP-TILRPGGITKEQLEAVIGMVSLDPALKDE 177 Query: 217 TSTPQSPGMLKSHYAPRSQV--------RLRAIHVNPREALIRFGNV---PIKNIENAII 265 P+SPGM +HYAP++ + ++ I +E + G + +++ +A + Sbjct: 178 KEKPKSPGMKYTHYAPKAPLSIVEGSREFIQLIVDKKKEEGFKVGVLTTEEYQHVYSADV 237 Query: 266 SLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325 L+ L A L++ ++ D S I S PN G+G AI NRL +AA + + Sbjct: 238 VLSCGVRSDLASVATKLYDVLRTFDASEVDVIFSESFPNEGIGNAIMNRLTKAAGHQIIT 297 Query: 326 QR 327 + Sbjct: 298 ES 299 >gi|311745837|ref|ZP_07719622.1| Sua5/YciO/YrdC/YwlC family protein [Algoriphagus sp. PR1] gi|126576040|gb|EAZ80318.1| Sua5/YciO/YrdC/YwlC family protein [Algoriphagus sp. PR1] Length = 321 Score = 310 bits (796), Expect = 1e-82, Method: Composition-based stats. Identities = 128/318 (40%), Positives = 177/318 (55%), Gaps = 13/318 (4%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 + KA FLD G +AIPTETVYGLA ++ NP A+ ++E K RP+ +PLI H S + V Sbjct: 7 DIAKAKRFLDEGKLVAIPTETVYGLAGNALNPLAVASIFETKNRPSFDPLIIHTSSMDRV 66 Query: 71 KKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 K P L K WPGPLTL+L + I L T+ L R+P T +L+ Sbjct: 67 KDFVEEIPDPLYKLGKSIWPGPLTLLLPRKAI--IPDLVTSGLDRVAIRIPNHPLTLELL 124 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E+ PLA PSAN G IS T +H+ + + IP I+DGG ++GLESTIV ++ E + Sbjct: 125 ESLDFPLAAPSANPFGYISPTQPRHV-EAQLGDSIPYILDGGNCQVGLESTIVGME-EGQ 182 Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248 V I R GGLE+ ++ I ++ TS PQ+PG+L SHYAPR L + + + Sbjct: 183 VVIYRLGGLELNEIEDLIG-PVQVKSHSTSNPQAPGLLASHYAPRKPFVLGDLDLLIEKY 241 Query: 249 LIRFGNVPIKNIENA------IISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302 + + + ++E + + LSK G LKEAA NLF M+ D+ I + Sbjct: 242 SLEGTSFALISLEKSFSDIPEAHQIALSKNGDLKEAAKNLFASMRQLDELDVEVILAEKM 301 Query: 303 PNHGLGIAINNRLERAAA 320 P GLG AIN+RL+RAAA Sbjct: 302 PAKGLGQAINDRLKRAAA 319 >gi|295100870|emb|CBK98415.1| translation factor SUA5 [Faecalibacterium prausnitzii L2-6] Length = 341 Score = 310 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 105/335 (31%), Positives = 166/335 (49%), Gaps = 20/335 (5%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 + D+ + +A E L G +A+PTETVYG+A D+RN A+ +++ K RP NPLI H Sbjct: 7 VRPADTAGIARAAELLRQGELVALPTETVYGIAADARNGEAVSKIFVAKGRPQDNPLIVH 66 Query: 64 VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 V+ M+ V + L F PGPLT+++ ++ A L T R+P Sbjct: 67 VTGPEMLHGLVSEVPERAQLLMAAFCPGPLTIIMPRGP--EVAAECCAGLDTVGIRMPSH 124 Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 + +IE G A PSAN SG+ S TN + + + + +PLI+DGG G+EST+V Sbjct: 125 PVARAVIEASGCAFAAPSANLSGKPSPTNAQDVFTD-MDGRLPLILDGGECDWGVESTVV 183 Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYC------VDETSTPQSPGMLKSHYAPRSQ 235 +V EK + RPG + +E L+RA+ E+E + E + +SPGM HYAP++ Sbjct: 184 SVVGEKP-TLFRPGHITLEDLERALGEEVEVSKAILEKLPEGAVVRSPGMKYKHYAPKAD 242 Query: 236 VRLRAIHVNPREALIRFGNVPI--------KNIENAIISLNLSKTGKLKEAAFNLFNYMK 287 V L +A + + + + + + G + A ++F ++ Sbjct: 243 VTLLDGTFEQFKAYVDAHAAEDPSCLCFTGEAEKLGVPCVEYGREGDGADQAKHIFRSLR 302 Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 D+ G + + GL +A+ NRL RAAA R Sbjct: 303 ALDEQGDAVVYARCPQKDGLSMAVYNRLIRAAAFR 337 >gi|312129757|ref|YP_003997097.1| translation factor sua5 [Leadbetterella byssophila DSM 17132] gi|311906303|gb|ADQ16744.1| translation factor SUA5 [Leadbetterella byssophila DSM 17132] Length = 314 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 112/312 (35%), Positives = 166/312 (53%), Gaps = 12/312 (3%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 ++KA L+AG +AIPTETVYGLA ++ NP A+ +++E K RP+ +PLI H+S + Sbjct: 6 KDIQKAKAILEAGGLVAIPTETVYGLAANALNPKAVAKIFEAKNRPSFDPLIIHISTFAE 65 Query: 70 VKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + K+ S L +A FWPGPLT++L I + T+ L+ RVP T L Sbjct: 66 LYKYTSQSLGQLTEIANKFWPGPLTVLLPKRDI--IPDVVTSGLERVAVRVPQHELTLSL 123 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + + PLA PSAN G +S T +H+ + ++ I+DGG ++G+ESTI+ ++ Sbjct: 124 LSSIDFPLAAPSANPFGYVSPTTAQHVY-DQLAGKVDYILDGGPCQVGVESTIIGIEVAD 182 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA--IHVNP 245 + + R GGL IE L+R ++ S P +PGMLK HY+P QV + + Sbjct: 183 -LVVYRKGGLAIEDLERNFEGKVRVNDFSASNPSAPGMLKKHYSPDKQVLVYKEGESYDK 241 Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305 A +RF I LS++ L EAA LF ++ D +I +P Sbjct: 242 ETAFLRF----SSPISGYSYQFVLSESADLAEAAARLFQGLRALDQMPVKTIVIEFVPEV 297 Query: 306 GLGIAINNRLER 317 GLG AIN+RL R Sbjct: 298 GLGRAINDRLRR 309 >gi|291543207|emb|CBL16316.1| translation factor SUA5 [Ruminococcus sp. 18P13] Length = 341 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 108/326 (33%), Positives = 154/326 (47%), Gaps = 16/326 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L+KA + G + +PTETVYGLA D+ N A+ +++ K RP NPLI H+S + Sbjct: 9 DEAGLQKAAGLIREGQVVGMPTETVYGLAADATNRDAVAKVFAAKGRPMDNPLIVHISSM 68 Query: 68 SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 +++ S V L LA FWPGPLT+++ + I ++ L T R+P + Sbjct: 69 EELEQAVSRVPELVASLADAFWPGPLTMIMP--KSELIPMETSGGLDTVGVRMPSHPVAQ 126 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LI G P+A PSANRSG S T +H+L + + IP I+DGG GLEST+V Sbjct: 127 ALIRIAGVPIAAPSANRSGYPSPTTAQHVL-ADMQGRIPAILDGGACSCGLESTVVAFDD 185 Query: 186 EKKVRILRPGGLEIETLKR-----AISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 ++ VRILRPG + E L I + V + SPGM HYAP + V L Sbjct: 186 DRTVRILRPGFVTKEMLLEHVPNVVIDPAIFRQVSASEKVASPGMKYKHYAPNAAVTLVE 245 Query: 241 IHVNPREALIRFGNVP------IKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGA 294 + +++ G E LF ++ D GA Sbjct: 246 GSPELFRQFLALQQADGVYALIFDGDAEQFPYPHMTYGGTSIEQGRQLFARLRELDQIGA 305 Query: 295 SSIAFSSIPNHGLGIAINNRLERAAA 320 ++ G+G+A+ NRL RAA Sbjct: 306 KTVYVRMPQKDGVGLAVYNRLIRAAG 331 >gi|134080269|emb|CAK97172.1| unnamed protein product [Aspergillus niger] Length = 397 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 104/356 (29%), Positives = 168/356 (47%), Gaps = 45/356 (12%) Query: 8 DSNALRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 ++ A+ A + L + +P+A PTETVYGL D+ A++ +Y+ K+RP+ NPLI HV Sbjct: 39 EAAAIEDAAQLLRTSDIPVAFPTETVYGLGADATRSDAVQGIYKAKQRPSDNPLIIHVDS 98 Query: 67 ISMVKKHAS----------------VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA 110 + M+++ + + P+ + FWPGPLT++L S + + P T+ Sbjct: 99 LGMLERLLNPTQESPSRRTSTAKNAIPPIYDSVISRFWPGPLTILLPNPSGSPLAPEVTS 158 Query: 111 NLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169 L T R+P + LI PLA PSAN S + S T +H+ + I LI+DG Sbjct: 159 KLTTFGVRMPSSPLARLLIHVTDRPLAAPSANASTKPSPTAAEHVF-HDLEGRIELILDG 217 Query: 170 GISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL------EYCVDETSTPQSP 223 G +G+EST+V+ + ILRPGG+ IE L+ E + +D P++P Sbjct: 218 GPCGVGVESTVVDGLSDPPA-ILRPGGIGIEELRTCAGWENVQVGYHDGTLDVKEIPRAP 276 Query: 224 GMLKSHYAPRSQVRL--------------RAIHVNPREALIRFGNVPIKNIENAII---S 266 GM HY+P+++V L R + G V ++ + + Sbjct: 277 GMKYRHYSPKARVVLFEAGSDEEAVTRHIRKDLEDSAIGAHMIGVVRTQHWKRGTATKET 336 Query: 267 LNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH--GLGIAINNRLERAAA 320 + +K A LF+ ++ D+ I +P+H L A+ NRL +AA Sbjct: 337 FDCHLGTDVKSIAQGLFSALRAMDEMEVDVIYVEGVPDHQGDLAAAVMNRLRKAAG 392 >gi|67539818|ref|XP_663683.1| hypothetical protein AN6079.2 [Aspergillus nidulans FGSC A4] gi|40738864|gb|EAA58054.1| hypothetical protein AN6079.2 [Aspergillus nidulans FGSC A4] Length = 1588 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 102/382 (26%), Positives = 161/382 (42%), Gaps = 74/382 (19%) Query: 11 ALRKACEFLDAGLP-IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 A+ +A L +A PTETVYGL D+ A++ +Y+ K+RP+ NPLI H+ + M Sbjct: 1204 AIAEAANLLRTSDVPVAFPTETVYGLGADATRSDAVQGIYKAKQRPSDNPLIVHIDSLQM 1263 Query: 70 VKKH---------------ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT 114 + + +++ P+ L + FWPGPLT++L S + + P T+NL T Sbjct: 1264 LNRLLNPASDTSCPTKVVQSTIPPIYKALIERFWPGPLTILLPNPSGSRLAPEVTSNLTT 1323 Query: 115 ACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173 R+P + LI PLA PSAN S + S T +H+ + I LI+DGG Sbjct: 1324 FGVRMPLSPLARLLIHVADRPLAAPSANASTKPSPTAAEHVF-HDLQGRIELILDGGPCG 1382 Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL------EYCVDETSTPQSPGMLK 227 +G+EST+V+ ILRPGG+ IE L+ E + D P++PGM Sbjct: 1383 VGVESTVVDGLSN-PPSILRPGGVSIEELRTCPGWENVQLAYHDGTYDVKEIPRAPGMKY 1441 Query: 228 SHYAPRSQVRLRAIHVNPREALIRFGN--------------------------VPIKNIE 261 HY+P+++V L + + +P ++IE Sbjct: 1442 RHYSPKARVVLFEAGSKSQAIVDHVKRDLQDTAVGAHSIGLVRTRTWKRGLQLLPEEDIE 1501 Query: 262 NAII----------------------SLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF 299 + +K+ A LF ++ D+ I Sbjct: 1502 KMAKATASLVGSLVQFSIPVGGKTKEVFDCHLGTDVKDIARGLFAALRAMDEKQVDVIYV 1561 Query: 300 SSIPNHG-LGIAINNRLERAAA 320 + + L A+ NRL +AA Sbjct: 1562 EGVSDTEYLAAAVMNRLRKAAG 1583 >gi|217076581|ref|YP_002334297.1| universally conserved protein [Thermosipho africanus TCF52B] gi|217036434|gb|ACJ74956.1| universally conserved protein [Thermosipho africanus TCF52B] Length = 337 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 95/333 (28%), Positives = 152/333 (45%), Gaps = 19/333 (5%) Query: 2 QIMSIT----DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 +I+ I + L + C + +G +A PTETVYGL + A+ ++++K R Sbjct: 4 KILKIDPLDFNEKDLIEVCNVIKSGGLVAFPTETVYGLGASAFEEKAVDNIFKVKGRAKD 63 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 NPLI HV + + A V PGP+T VL ++ TA LKT Sbjct: 64 NPLIVHVDRFEKLLEIAEVAEKYFEAINKLTPGPVTFVLKQ--KINLPKNVTAGLKTVGV 121 Query: 118 RVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 R+P + + P+A PSAN SG+ S T+ + ++ + +I IID G S+ GLE Sbjct: 122 RIPAHPVARKLCKCAGPIAAPSANLSGKPSPTDSQAVI-EDLFGKIDFIIDAGNSEFGLE 180 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCVDETST---PQSPGMLKSHYAPR 233 STI+++ E + +LRPG + IE L+ VE+ V + S+ P++PGM HYAP Sbjct: 181 STIIDLTSEIPI-VLRPGPITIEQLESIFGKVEIPQFVIDASSVENPKAPGMKYRHYAPE 239 Query: 234 SQVRLRAIHVNPREALIRFGNVPI-------KNIENAIISLNLSKTGKLKEAAFNLFNYM 286 V + + K + L K + A NLF + Sbjct: 240 KPVYRFNKVQREKVIKKALSENGVFICPEEHKKFYPDDRIMILGKLSEPYSIAQNLFKVL 299 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 + D S + + G+ +++ NRL++A+ Sbjct: 300 REFDRSNFNVAFIEAFEEKGILLSVMNRLKKAS 332 >gi|121534884|ref|ZP_01666703.1| Sua5/YciO/YrdC/YwlC family protein [Thermosinus carboxydivorans Nor1] gi|121306483|gb|EAX47406.1| Sua5/YciO/YrdC/YwlC family protein [Thermosinus carboxydivorans Nor1] Length = 346 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 107/333 (32%), Positives = 157/333 (47%), Gaps = 22/333 (6%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L +A + L G +A PTETVYGL + + A R+Y K RP+ NPLI H++D Sbjct: 14 DKRILAEAADILRRGGLVAFPTETVYGLGANGLDAQAAARIYAAKGRPSDNPLILHIADS 73 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 V A + + L +WPGPLT+VLD T + T L T R+P + Sbjct: 74 GDVALLARRIPANAAALMARYWPGPLTIVLDR--TDVVPDAVTGGLSTVAVRLPASTVAR 131 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +LI G P+A PSAN SG+ S T + +L + + I ++D G IG+EST+V+ Sbjct: 132 ELIRLAGVPVAAPSANTSGRPSPTTAQAVL-ADLSGRIDAVLDAGPCDIGVESTVVDCTT 190 Query: 186 EKKVRILRPGGLEIETLKRAIS-VELEYCVDE-TSTPQSPGMLKSHYAPRSQVRLRAIHV 243 +LRPGG+ +E L + VEL+ + E T+TP+SPGM +HYAP + + L Sbjct: 191 PVP-TLLRPGGITLEMLLETLGEVELDSALAESTATPRSPGMKYTHYAPAAPMTLVEGAG 249 Query: 244 NPREALIRFGNVPIKN--------------IENAIISLNLSKTGKLKEAAFNLFNYMKIA 289 + + +A++ A NL+ ++ Sbjct: 250 AAAMVRRKVTEALAAGWRVGAVVSAETAALLPSAVVKAVYGPRDDAAAIAANLYQALRHF 309 Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 D I I GLG+A+ NRL +AA R Sbjct: 310 DACPVDVIYAEGITESGLGLAVMNRLRKAAGYR 342 >gi|229551969|ref|ZP_04440694.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus rhamnosus LMS2-1] gi|229314704|gb|EEN80677.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus rhamnosus LMS2-1] Length = 340 Score = 309 bits (793), Expect = 3e-82, Method: Composition-based stats. Identities = 104/325 (32%), Positives = 164/325 (50%), Gaps = 15/325 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A L G +A PTETVYGL D+ N TA+ ++Y K RP+ NPLI V+D + Sbjct: 7 ESDIPEAAAALKRGELVAFPTETVYGLGADATNVTAVSQVYAAKGRPSDNPLIVTVADAA 66 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 MV ++A++ P + L FWPGPLT++L++L + T L+TA FR P T+KL Sbjct: 67 MVSQYATITPDAAKLMDTFWPGPLTIILNILPGR-LSMKVTGGLQTAAFRNPDDALTRKL 125 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I T G P+ PSAN SG+ S T H+L + +I ++D G +++G+ESTI+++ Sbjct: 126 IATAGVPIVGPSANTSGKPSPTTADHVL-HDLADKIAGVLDDGPTRVGVESTIIDLTVTP 184 Query: 188 KVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245 ILRPG + L+ + + V + P++PGM HYAP +QV + Sbjct: 185 PA-ILRPGAIGPHELEPLLGPVDSAAHHVGKNEAPKAPGMKYKHYAPAAQVVVVDTIDQF 243 Query: 246 REALIR-------FGNVPIKNIENAIISLNLSKTG-KLKEAAFNLFNYMKIAD-DSGASS 296 +A+ FG + +I + G + A LF ++ D + Sbjct: 244 DDAVAWAKKTGQTFGLLATDSILAHFPDVPSYSLGQDITSATHALFAGLRWFDLHPDVTL 303 Query: 297 IAFSSIPNHGLGIAINNRLERAAAP 321 + + + L A NRL ++A Sbjct: 304 VLAQAFSHSELSAAYMNRLLKSAGN 328 >gi|296284822|ref|ZP_06862820.1| putative translation factor [Citromicrobium bathyomarinum JL354] Length = 323 Score = 309 bits (793), Expect = 3e-82, Method: Composition-based stats. Identities = 114/321 (35%), Positives = 168/321 (52%), Gaps = 14/321 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 DS + + + L G +A+PTETVYGLA + + A+ R++ K RP+ NPLI HVSD+ Sbjct: 13 DSTGIARTAQILRDGGLVAVPTETVYGLAARADSEDAVSRIFAAKGRPSFNPLIVHVSDV 72 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + +++P +L LA FWPGPLTLVL + A L T R P + Sbjct: 73 QQAEALVTMEPRALALAARFWPGPLTLVLPRHENAAVASSIHAGLPTLAVRCPAHPVMRA 132 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 +++ P+A PSAN S +S T +H+L +++ I ++D G S+ GLESTIV ++ + Sbjct: 133 VLDELAIPVAAPSANASETVSPTTAEHVL-ATLDGRIDSVLDAGASERGLESTIVALRAD 191 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246 +LR G + E L+ + E + ++PG ++ HYAP +RL A Sbjct: 192 GGWSLLREGPIGREVLEDMLGSE----ASDGRGIEAPGQMRRHYAPGKPLRLNARKAEAG 247 Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306 E LI FG V + LS TG + EAA L+ + + S IA + +P Sbjct: 248 EFLIGFGAVEGD--------VTLSATGDVNEAATRLYGCLHLGAASDKPLIAVAPVPEDA 299 Query: 307 LGIAINNRLERAAAPRNQSQR 327 +G AIN+RL RAAAP QR Sbjct: 300 VGRAINDRLRRAAAPPEGDQR 320 >gi|307298419|ref|ZP_07578222.1| Sua5/YciO/YrdC/YwlC family protein [Thermotogales bacterium mesG1.Ag.4.2] gi|306915584|gb|EFN45968.1| Sua5/YciO/YrdC/YwlC family protein [Thermotogales bacterium mesG1.Ag.4.2] Length = 345 Score = 309 bits (793), Expect = 4e-82, Method: Composition-based stats. Identities = 104/330 (31%), Positives = 151/330 (45%), Gaps = 22/330 (6%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L+KA F+ G + PTETVYGL ++ + +AI ++Y K RP NPLI HVS Sbjct: 14 DEFRLKKAARFIRDGELVVFPTETVYGLGANALDESAISKIYHAKGRPQDNPLIVHVSSR 73 Query: 68 SMVKKHASVD-PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK- 125 MV S + L WPGP+TL+ I TA L T R P Sbjct: 74 EMVADLVSQNLSEYSALMDTVWPGPVTLIFRKRK--RIPDSVTAGLDTVAIRFPSHPVAS 131 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 KLIE P+A PSAN SG+ S T +H++ + + II G + GLESTI+++ Sbjct: 132 KLIELSCVPVAAPSANLSGKPSPTREEHVV-EDMDGRVSCIILSGSTVFGLESTIIDLSR 190 Query: 186 EKKVRILRPGGLEIETLKRAI-SVELEYCVDETST----PQSPGMLKSHYAPRSQVRLRA 240 E+ V +LRPG ++ + LK + +++ P SPG+ HY+P + L Sbjct: 191 ERPV-LLRPGPIDPDQLKGVLPDLQIPGFASGREQYLGDPLSPGLKYRHYSPDIPLILVE 249 Query: 241 IH-----------VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIA 289 + +L+ + + L L E A NLF ++ Sbjct: 250 GELGLVVSKVGIIAGRKSSLVLCSEELRDYYPVQVKKVVLGSRSNLLEVASNLFKELRDK 309 Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAA 319 ++ S I P G+G+AI NRL +AA Sbjct: 310 ENMSFSQIIAEPFPETGVGLAIMNRLRKAA 339 >gi|257066248|ref|YP_003152504.1| Sua5/YciO/YrdC/YwlC family protein [Anaerococcus prevotii DSM 20548] gi|256798128|gb|ACV28783.1| Sua5/YciO/YrdC/YwlC family protein [Anaerococcus prevotii DSM 20548] Length = 344 Score = 309 bits (793), Expect = 4e-82, Method: Composition-based stats. Identities = 94/331 (28%), Positives = 155/331 (46%), Gaps = 20/331 (6%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 D + +++A L G +AIPTETVYGL + + A +++ K RPA NPLI H+S+ Sbjct: 13 IDEDIIKRAAVLLRRGELVAIPTETVYGLGANGLDEKACLNIFKTKNRPADNPLILHISN 72 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125 M+ WPGPLT++ + I + TA T R P + Sbjct: 73 KEMLYNLVEDVSDDAKKLMTLWPGPLTMIF--KKSEIIPEVVTAGGDTVAVRFPVDEIAR 130 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 ++IE P+A PSAN SG+ S TN + +IPLIIDGG IG+EST++++ Sbjct: 131 RIIEEANIPIAAPSANISGRPSPTNASDCYYD-LNGKIPLIIDGGDCNIGIESTVIDMSE 189 Query: 186 EKKVRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 + ILRPG +E ++ + + VD+ P+SPG HYAP++++++ + Sbjct: 190 DTP-TILRPGFYTLEYIREILPNVALDDALVDDNKIPKSPGQKYKHYAPKARMQVYVGDM 248 Query: 244 NPREALIRFGNVPIKNIENAIISL-------------NLSKTGKLKEAAFNLFNYMKIAD 290 + K I+ ++ + L + + LF ++ D Sbjct: 249 ASDFIYKKAREYQNKGIKVGVLVFEDNMKRFEGFERISFGDRSDLSQMSHVLFTALRKMD 308 Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 I + ++ LG +I NR++++AA Sbjct: 309 KLKVDLILAEGVMDNNLGKSIMNRMKKSAAG 339 >gi|330684783|gb|EGG96476.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis VCU121] Length = 347 Score = 309 bits (793), Expect = 4e-82, Method: Composition-based stats. Identities = 97/331 (29%), Positives = 156/331 (47%), Gaps = 17/331 (5%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 I S + + + + G +A+PTETVYGL D+ N A+ ++YE K RP+ NPLI H+ Sbjct: 14 DIQQSTDVLEIKDTVLNGGLVALPTETVYGLGADATNQEAVSQIYEAKGRPSDNPLIVHI 73 Query: 65 SDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 D+S + V+P L + FWPGP++ +L L S + P T L + R+P Sbjct: 74 HDMSQMNDFIDKVEPRVQQLMETFWPGPISFILPLKSGY-LCPKVTGGLNSIAVRMPSHP 132 Query: 124 T-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 + +++ P+A PSAN SG+ S T +H+ + I II+G S+ GLEST+++ Sbjct: 133 IGRGVLQQIDKPIAAPSANISGRPSPTTFEHVY-QDLNGRIDGIINGDQSEEGLESTVLD 191 Query: 183 VQCEKKVRILRPGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRL--- 238 + RI RPG + L+ I +E +E S P +PGM HY+P + V + Sbjct: 192 CT-QYPFRIARPGSITKMMLENVIPNCIESSNYNEASQPIAPGMKYKHYSPDTPVTILKE 250 Query: 239 --RAIHVNPREALIRFG--NVPIKNIENAIISLNLSKT-GKLKEAAFNLFNYMKIADDSG 293 + I N + + F + + + L +K+A L++ + D Sbjct: 251 LNKKILDNKKWEQVAFVVPDSLSHFLPKEATYIKLCDNEADIKQANHLLYSILHEIDQR- 309 Query: 294 ASSI--AFSSIPNHGLGIAINNRLERAAAPR 322 I AI NR+ +AA + Sbjct: 310 VDIIQAYIYGFDESDQSEAIMNRMLKAAGNK 340 >gi|119356333|ref|YP_910977.1| translation factor SUA5 [Chlorobium phaeobacteroides DSM 266] gi|119353682|gb|ABL64553.1| translation factor SUA5 [Chlorobium phaeobacteroides DSM 266] Length = 323 Score = 309 bits (792), Expect = 4e-82, Method: Composition-based stats. Identities = 106/323 (32%), Positives = 166/323 (51%), Gaps = 12/323 (3%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 MQ + +TDS +A ++ G +A PTETVYGL P A+++L+ K RP NPL Sbjct: 1 MQTL-LTDSP--EEAARIINQGNIVAFPTETVYGLGAAICFPEAVKKLFLAKGRPTDNPL 57 Query: 61 ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I H+ + + K A + P + L + F+PGPLTLVL +T + TA L T R Sbjct: 58 IVHIHNAGEMSKVASEISPEATLLIEHFFPGPLTLVLKKKAT--VPDAVTAGLDTVGVRC 115 Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P + + P+A PSAN SG+ S T + + + +IP I+ G S +GLES Sbjct: 116 PENQIARAFLRHCCAPVAAPSANLSGKPSSTTWEAVF-HDLNGKIPCILRGEPSIVGLES 174 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQVR 237 TIV+ + + +LR G + +E L+R + + P+SPG+ HYAP++ +R Sbjct: 175 TIVDCSEHEPI-LLREGAVTLEELQRILPAMKARKTGMKDEKPKSPGLKYPHYAPKAAIR 233 Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297 L P E+ + + + N I +++ + ++E A +LF++ + D G S I Sbjct: 234 LCRRGERPPESTLSSAYIGLSNPPEGIRMVSICQ--SIEEYARSLFSFFRACDREGISVI 291 Query: 298 AFSSIPNHGLGIAINNRLERAAA 320 GLG AI++RL RA+ Sbjct: 292 YCELPEQKGLGRAIHDRLMRASG 314 >gi|239617335|ref|YP_002940657.1| Sua5/YciO/YrdC/YwlC family protein [Kosmotoga olearia TBF 19.5.1] gi|239506166|gb|ACR79653.1| Sua5/YciO/YrdC/YwlC family protein [Kosmotoga olearia TBF 19.5.1] Length = 342 Score = 309 bits (792), Expect = 4e-82, Method: Composition-based stats. Identities = 104/330 (31%), Positives = 151/330 (45%), Gaps = 23/330 (6%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + +A +L G +A PTETVYGL ++ + A +++E K RP NPLI HVS I Sbjct: 14 DKGIILRAARYLQKGELVAFPTETVYGLGANALDAKAASKIFEAKGRPQDNPLIVHVSSI 73 Query: 68 SMVKKHASVD-PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 M ++ D L +L WPGP+T++ + I + TA L R P + Sbjct: 74 EMAQELVLDDLNDYKWLVELLWPGPVTIIF--RKSRRIPDIVTAGLPNVGIRFPSHPVAQ 131 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 KLIE G P+A PSAN SG+ S T+ H++ + I ++ G + GLESTIV++ Sbjct: 132 KLIEIAGLPIAAPSANLSGRPSPTDEFHVI-EDMDGRIACMLLAGKTLFGLESTIVDLSR 190 Query: 186 EKKVRILRPGGLEIETLKRAI-SVELEYCVDETST----PQSPGMLKSHYAPRSQVRLRA 240 K +LRPG + +E LK +E+ V +PGM HY+P+ ++ L Sbjct: 191 GKP-TLLRPGPISVERLKTLFPDLEVPEFVKAEEKYSGPALAPGMKYRHYSPKIELILVE 249 Query: 241 IHVNPREA-----------LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIA 289 R +I I L L E A NLF ++ Sbjct: 250 GDPRERYKEIITFAFEKNSIILCSRETEHLYPGEIKRRVLGSRDNLYEVAANLFYALREP 309 Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAA 319 I + P G+G+AI NRL +AA Sbjct: 310 -GEEFERIVSEAFPETGVGLAIMNRLRKAA 338 >gi|157364237|ref|YP_001471004.1| Sua5/YciO/YrdC/YwlC family protein [Thermotoga lettingae TMO] gi|157314841|gb|ABV33940.1| Sua5/YciO/YrdC/YwlC family protein [Thermotoga lettingae TMO] Length = 338 Score = 309 bits (792), Expect = 4e-82, Method: Composition-based stats. Identities = 100/326 (30%), Positives = 165/326 (50%), Gaps = 17/326 (5%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 + LRKA + + G +A PTETVYGL D N +A+ ++++IK RPA NPLI H+ D Sbjct: 13 NEGILRKAAQTIKEGGVVAFPTETVYGLGADCFNISAVLKIFQIKNRPADNPLIIHIYDK 72 Query: 68 SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126 +++ + ++ +FWPGP+T + ++ T L+T R+P + Sbjct: 73 KQLEELVEGDIEQNSYVMDVFWPGPVTFIF--RKKANVPKEVTGGLETVAIRMPSHPVAQ 130 Query: 127 L-IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 + + G P+A PSAN SG+ S T +H++ + + + +IIDGG + +GLESTIV++ Sbjct: 131 VFLRLSGTPVAAPSANLSGKPSPTRAEHVI-ADLYGSVDVIIDGGETPLGLESTIVDLSR 189 Query: 186 EKKVRILRPGGLEIETLKRAIS---VELEYCVDETS--TPQSPGMLKSHYAPRSQVRLRA 240 + V +LRPG IE +K+ + + E P +PGM HYAP + L Sbjct: 190 DYPV-LLRPGPATIEEIKKIVPNLYIPDFLLKKENEPVKPLAPGMAYRHYAPDKPLILVI 248 Query: 241 IHVNPREALIRFGNVPIKNIEN------AIISLNLSKTGKLKEAAFNLFNYMKIADDSGA 294 E L + + PI E ++ + K + A NLF+ ++ D A Sbjct: 249 NEKKLDEVLSKHPDSPIICPEEMSDRFYGRKTIIMGKLREPFTIAQNLFHVLREVDSLNA 308 Query: 295 SSIAFSSIPNHGLGIAINNRLERAAA 320 S+ + G+ ++ NRL++AA+ Sbjct: 309 ESVIVIGLEPQGILFSVMNRLKKAAS 334 >gi|310829674|ref|YP_003962031.1| Sua5/YciO/YrdC/YwlC family protein [Eubacterium limosum KIST612] gi|308741408|gb|ADO39068.1| Sua5/YciO/YrdC/YwlC family protein [Eubacterium limosum KIST612] Length = 345 Score = 308 bits (791), Expect = 5e-82, Method: Composition-based stats. Identities = 100/329 (30%), Positives = 161/329 (48%), Gaps = 23/329 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L KA E + G + PTETVYGL ++ + +A+++++E K RPA NPLI H++D ++ Sbjct: 18 LTKAGELIARGETVVFPTETVYGLGANALDESAVKKIFEAKGRPADNPLIVHIADRDDLE 77 Query: 72 KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 K V + L FWPGPLTL++ ++ + + TA L T R P LI+ Sbjct: 78 KLVTEVPEKAEKLMDAFWPGPLTLIM--HKSSGVPEVVTAGLDTVAVRFPSNLIALGLIK 135 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 + G P+A PSAN SG+ S T +H++ + + II + +GLEST+V+ E Sbjct: 136 SAGVPIAAPSANISGRPSPTKSEHVIEDMMG-RVSAIIVSEDTDVGLESTVVDTTTE-PP 193 Query: 190 RILRPGGLEIETLKRAIS-VELEYCVDETSTP---QSPGMLKSHYAPRSQVRLRAIHVNP 245 +LRPGG+ + L+ I V++ E P +SPGM +HY+P+ + + Sbjct: 194 TVLRPGGVTVAELEAVIGRVQVSPNAIENVIPEKAKSPGMKYTHYSPKGDLVIVKGTDAE 253 Query: 246 REALI----------RFGNVPIKNI---ENAIISLNLSKTGKLKEAAFNLFNYMKIADDS 292 + I + G + ++ I ++L +E + NLF ++ DD Sbjct: 254 KVEKINRHIKKHEEMQIGILATDETMGNYHSGIIISLGSRENPEEMSHNLFARLRTFDDL 313 Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAAP 321 G I I +A+ NRL +A Sbjct: 314 GIEKIYAEDIEVGNDTLALANRLYKAGGY 342 >gi|167464535|ref|ZP_02329624.1| hypothetical protein Plarl_18596 [Paenibacillus larvae subsp. larvae BRL-230010] gi|322383116|ref|ZP_08056943.1| ribosome maturation-like factor [Paenibacillus larvae subsp. larvae B-3650] gi|321152778|gb|EFX45404.1| ribosome maturation-like factor [Paenibacillus larvae subsp. larvae B-3650] Length = 352 Score = 308 bits (791), Expect = 6e-82, Method: Composition-based stats. Identities = 104/333 (31%), Positives = 155/333 (46%), Gaps = 24/333 (7%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 A+R+A L G +A PTETVYGL D+ A+R ++ K RP+ NPLI H++D Sbjct: 18 KAVREAAALLREGKTVAFPTETVYGLGADAAQTEAVRAIFTAKGRPSDNPLIVHIADCKQ 77 Query: 70 VKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 ++ S V + + L WPGPLTL+L + + PL TA L T R P L Sbjct: 78 LEDLVSGVPEVLVPLMDACWPGPLTLILPVRPDA-VSPLVTAGLDTVGIRFPDHPVALAL 136 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G P+A PSAN SG+ S T H+L + I IIDGG + +G+EST++ + + Sbjct: 137 LREAGIPIAAPSANSSGRPSPTKASHVL-EDLDGCIGGIIDGGAAGVGIESTVLQWK-DG 194 Query: 188 KVRILRPGGLEIETLKRAI-SVELEYCVDET--STPQSPGMLKSHYAPRSQVRLRAIHVN 244 V +LRPGG+ +E L+ + V L P++PGM +HYAP ++ L Sbjct: 195 VVHVLRPGGISLEQLQVLLPGVPLREPASSEHVEAPRAPGMKYTHYAPAGKLLLVQGSPA 254 Query: 245 PREALIRFGNVPIKNIE----------------NAIISLNLSKTGKLKEAAFNLFNYMKI 288 R G + + A A L++ ++ Sbjct: 255 SRVHQWMNGQLALAKGRGERTGVLTFEEHRTCFEADYVSVCGSLANPDTIARRLYDGLRS 314 Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 D+ + I + P G+G A+ NRL +AA Sbjct: 315 FDEHDITYILAETCPEEGIGQAVMNRLLKAAGH 347 >gi|294658611|ref|XP_002770816.1| DEHA2F13486p [Debaryomyces hansenii CBS767] gi|202953256|emb|CAR66340.1| DEHA2F13486p [Debaryomyces hansenii] Length = 402 Score = 308 bits (790), Expect = 6e-82, Method: Composition-based stats. Identities = 107/350 (30%), Positives = 166/350 (47%), Gaps = 36/350 (10%) Query: 2 QIMSITDSNALRKACEFLDAG-LPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 +I +LR A L + PTETVYGL + N +++ +Y+ K RPA NPL Sbjct: 50 KITDPETEKSLRIAANELATSTNVVGFPTETVYGLGGSALNDESVKSIYKAKNRPADNPL 109 Query: 61 ICHVSDISMVKKHA-----SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115 I HVS I +K+ + + +L + FWPGPLT++L + + I + TAN T Sbjct: 110 IVHVSSIDQLKRKILPKDYKIPEIYDNLIEKFWPGPLTILLPIHEGSPISKIVTANQSTF 169 Query: 116 CFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174 R+P + LI PLA PSAN S + S T H+ + +IP IIDGG + Sbjct: 170 AVRIPQHPIARALIALSDLPLAAPSANASTRPSPTLASHVY-HDLQGKIPYIIDGGACDV 228 Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV------DETSTPQSPGMLKS 228 G+EST+V+ + + +LRPGG+ +E +++ E V ++ ++PGM Sbjct: 229 GVESTVVDGLVDPPM-LLRPGGVSVEDVRKTGGGSWENVVLAKKTAGKSEAVKTPGMKYK 287 Query: 229 HYAPRSQVRLRAIHVNPREALIRFGNV------------------PIKNIENAI-ISLNL 269 HY+P ++V L + A+ ++ + + I I I +L Sbjct: 288 HYSPTAKVVLFINCGDGIAAISKYISENNIPESKTIALLKSRYFTDARAISRQINIEEDL 347 Query: 270 SKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 TG E + NLF ++ D+ G I I G+A+ NRL +AA Sbjct: 348 GATGP--EISRNLFKLLRQVDEQGVDIIFIEGIDETDEGLAVMNRLSKAA 395 >gi|329889534|ref|ZP_08267877.1| SUA5 domain protein [Brevundimonas diminuta ATCC 11568] gi|328844835|gb|EGF94399.1| SUA5 domain protein [Brevundimonas diminuta ATCC 11568] Length = 312 Score = 308 bits (790), Expect = 7e-82, Method: Composition-based stats. Identities = 120/307 (39%), Positives = 166/307 (54%), Gaps = 13/307 (4%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A E L G + +PTETVYGLA D+ NP A+ R++E K RP NPLI HV++ + A Sbjct: 15 AAEALKTGRLVILPTETVYGLAADASNPQAVARIFEAKGRPRFNPLIAHVANAVDAEAIA 74 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGH 133 D + LA+ FWPGPLT+V + + L+ A L + RVP + +I +G Sbjct: 75 VFDAKARALAEAFWPGPLTIVAPVRDRERVCDLARAGLDSVAVRVPGHPRARAVIGAFGG 134 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 P+ PSANRSG+ S T L + + + +DGG +G+EST+V+V + +V +LR Sbjct: 135 PVVAPSANRSGRPSPTTFGDALEET-GQAVGAAVDGGPCAVGVESTVVSVL-DGQVALLR 192 Query: 194 PGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFG 253 PG + E ++ A + +SPG L HYAP + VR+ A E L+ FG Sbjct: 193 PGSVTREEIEAAAG----PLAEGGQGHRSPGRLALHYAPDAPVRIEADGARDGEILLGFG 248 Query: 254 NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINN 313 +LS +G L+EAA NLF ++ AD S S IA S IP GLG AIN+ Sbjct: 249 ------AGVGDPRWSLSPSGDLREAAANLFRLLREADRSKPSGIAVSPIPAKGLGEAIND 302 Query: 314 RLERAAA 320 RL RAA Sbjct: 303 RLRRAAG 309 >gi|50552650|ref|XP_503735.1| YALI0E09449p [Yarrowia lipolytica] gi|49649604|emb|CAG79325.1| YALI0E09449p [Yarrowia lipolytica] Length = 373 Score = 308 bits (790), Expect = 7e-82, Method: Composition-based stats. Identities = 106/346 (30%), Positives = 159/346 (45%), Gaps = 32/346 (9%) Query: 5 SITDSN---ALRKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 SI+DS AL+ A L P+A PTETVYGL + + +++ +Y K RPA NPL Sbjct: 25 SISDSETLEALKHASHVLQTTHEPVAFPTETVYGLGASALSTESVKSIYAAKNRPADNPL 84 Query: 61 ICHVSDISMVKKHA----SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 I HVS + +K+ + + L + FWPGPLT++L L S +D+ P T T Sbjct: 85 IVHVSSLDQLKRKILKGREIPDVYTPLIEKFWPGPLTILLPLDSDSDVSPACTVGQPTVA 144 Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R+P + LI PLA PSAN S + S T H+ + IPLI+DGG +G Sbjct: 145 VRMPDHPVARSLIALSDLPLAAPSANASTRPSPTTADHVY-HDLQGRIPLILDGGACHVG 203 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV------DETSTPQSPGMLKSH 229 +EST+V+ + + +LRPGG+ +E ++ + + + ++PGM H Sbjct: 204 VESTVVDGLSDPPM-LLRPGGVSLEQIREHGGEKWKNVLVGRANAKTDEAVRTPGMKYKH 262 Query: 230 YAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAIISL---------------NLSKTGK 274 Y+P +V L + V +E I L LS Sbjct: 263 YSPTGKVVLFGPVSDKSVEQAVKEYVTSGELEGKKIGLLTSLTLSNDTLPDVHTLSMGTT 322 Query: 275 LKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + NLF ++ D + I I G+A+ NRL +AA+ Sbjct: 323 PALVSRNLFAGLRDMDIAEVEVILVEGIREEDEGLAVMNRLRKAAS 368 >gi|70607376|ref|YP_256246.1| hypothetical protein Saci_1642 [Sulfolobus acidocaldarius DSM 639] gi|68568024|gb|AAY80953.1| universally conserved protein [Sulfolobus acidocaldarius DSM 639] Length = 352 Score = 308 bits (790), Expect = 7e-82, Method: Composition-based stats. Identities = 97/324 (29%), Positives = 156/324 (48%), Gaps = 19/324 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +R+A E + G ++ PTETVYGL ++ + A ++++ K RP NPLI H++++ + Sbjct: 17 IREASEVIKRGGLVSFPTETVYGLGANAYDGNACLKIFQAKNRPPDNPLIVHIAELDQLF 76 Query: 72 KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 A ++ L + ++ WPGPLTL+L ++ I +A L T R+P +LI Sbjct: 77 DVAVDINEKVLEIVQVIWPGPLTLIL--KKSSKIPKEVSAGLDTVAVRMPAHPIALQLIR 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G P+A PSAN + + S T + +L+ + + +IIDGG + G+ESTIVNV Sbjct: 135 ESGVPIAAPSANLATRPSPTRAEDVLND-LNGRVDIIIDGGHTFFGVESTIVNVTSN-PP 192 Query: 190 RILRPGGLEIETLKRAIS----VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245 +LRPG +E L+ E + E +PGM HYAP ++ L Sbjct: 193 TLLRPGPFTVEELRSFFPDIQVPEFARGLGEADIALAPGMKYRHYAPSKKIILIENRSLM 252 Query: 246 RE------ALIRFGNVPIKNIENAIIS---LNLSKTGKLKEAAFNLFNYMKIADDSGASS 296 R+ A + + K + N + L L E A NLF ++ ++ Sbjct: 253 RKVVDLLSAKYKVTVLITKELVNEFKDKDMIVLGSDENLYEVARNLFESFRLLENRDTEL 312 Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320 P G+G+AI NR +A+ Sbjct: 313 GVMVGFPERGVGLAIMNRARKASG 336 >gi|295105441|emb|CBL02985.1| translation factor SUA5 [Faecalibacterium prausnitzii SL3/3] Length = 341 Score = 308 bits (789), Expect = 9e-82, Method: Composition-based stats. Identities = 107/344 (31%), Positives = 169/344 (49%), Gaps = 29/344 (8%) Query: 1 MQIMS---ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 M+I + D + +A + L G +A+PTETVYG+A D+RN A+R ++ K RP Sbjct: 1 MEIKTRVLPADEAGVAEAAQLLRQGQLVALPTETVYGIAADARNGAAVRNIFVAKGRPQD 60 Query: 58 NPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 NPLI HV+ M+ V + L F PGPLT+++ ++ A L T Sbjct: 61 NPLIVHVTGPEMLPGLVSEVPERAQLLMAAFCPGPLTIIMPRGP--EVADECCAGLDTVG 118 Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R+P + +I+ G A PSAN SG+ S TN + + + + +PLI+DGG +G Sbjct: 119 IRMPSHPVARAVIQQSGCAFAAPSANLSGKPSPTNAQDVFTD-MDGRLPLILDGGECDVG 177 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYC------VDETSTPQSPGMLKSH 229 +EST+V+V +K + RPG + +E L+RA+ E+E + E + +SPGM H Sbjct: 178 VESTVVSVVGDKP-TLFRPGHITLEDLERALGEEVEVSKAILEKLPEGAVVRSPGMKYKH 236 Query: 230 YAPRSQVRL-----------RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEA 278 YAP++ V L H + + + F K + + + G + Sbjct: 237 YAPKADVTLLNGTFAQFKAYVDAHKDENPSCLCFTGESAKL---NVPCVEYGREGDGADQ 293 Query: 279 AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 A ++F ++ D+ G + GL +A+ NRL RAAA R Sbjct: 294 AKHIFRSLRALDEQGDGVVYARCPQKDGLSMAVYNRLIRAAAFR 337 >gi|149200145|ref|ZP_01877169.1| sua5 related protein [Lentisphaera araneosa HTCC2155] gi|149136786|gb|EDM25215.1| sua5 related protein [Lentisphaera araneosa HTCC2155] Length = 322 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 107/331 (32%), Positives = 171/331 (51%), Gaps = 17/331 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I T+ N ++KA E L +A TETVYGL ++ +P A ++++ KKRP +PL Sbjct: 1 MAIFRGTEEN-IKKAAEHLKNDNLVAFATETVYGLGANALSPPACEKIFKAKKRPKYDPL 59 Query: 61 ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I H+++I + + ++L LA+ +WPGPLTLV T I L T+ L T R+ Sbjct: 60 IVHIAEIYQLSDLVKEIPDVALDLAEAYWPGPLTLVF--KKTDLIPSLITSGLDTVAIRM 117 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P L+ P+A PSAN G +S T+ +H+ S + E+ +I+DGG G+ES Sbjct: 118 PAHPLALGLLSEAQIPVAAPSANPFGYLSPTSAEHVFS-QLENEVDIILDGGECDWGIES 176 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238 TIV+ + + +LR GG+ E ++R +++ P +PG L SHYAP +++ + Sbjct: 177 TIVDCSSGEAI-LLRQGGISAEDIRRVTG-SVQFGKAVLERPLAPGQLASHYAPNTKLMI 234 Query: 239 RA------IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDS 292 I + + ++ G+ I+ E ++S N K A NLF+ + D Sbjct: 235 LKSGEVPNIADSAKVGFLQMGSTSIEATEIEVLSEN---EQDFKSIAHNLFSALHRLDSK 291 Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAAPRN 323 G I + + L AI +RL +AAA R+ Sbjct: 292 GLDVIYVYELEGNDLASAIMDRLLKAAAKRS 322 >gi|255034046|ref|YP_003084667.1| Sua5/YciO/YrdC/YwlC family protein [Dyadobacter fermentans DSM 18053] gi|254946802|gb|ACT91502.1| Sua5/YciO/YrdC/YwlC family protein [Dyadobacter fermentans DSM 18053] Length = 349 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 126/324 (38%), Positives = 177/324 (54%), Gaps = 12/324 (3%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 I+++T S+ L A EFL G +AIPTETVYGLA ++ N A+ ++E+K RPA +PLI Sbjct: 32 ILAVTGSD-LSVAKEFLIKGELVAIPTETVYGLAGNALNEKAVLSIFEVKNRPAFDPLII 90 Query: 63 HVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 H + V + S P LA+ WPGPLTL+L + L T+ L T R+P Sbjct: 91 HTDSLKKVAIYVSDVPEKARILAEKLWPGPLTLLLP--KKDIVPDLVTSGLDTVAVRIPD 148 Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 T++L+ PLA PSAN G IS T H+ + IP I+DGG ++G+ESTI Sbjct: 149 HALTRELLAQLSFPLAAPSANPFGYISPTKPAHV-EQQLGDRIPYILDGGECEVGIESTI 207 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR- 239 V + ++ + + R GGL+I ++ I + TS P++PGMLKSHYAPR + L Sbjct: 208 VGFENDETI-VYRLGGLDINEIESLIG-PVALMPHSTSDPKAPGMLKSHYAPRKPLHLYR 265 Query: 240 --AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297 AI + + ++ L LS LKEAA NLF Y++ D S I Sbjct: 266 RDAITPGDAGTGYLLFDRYLDGVDRRYQRL-LSPGHDLKEAAHNLFAYLRELDGLPVSEI 324 Query: 298 AFSSIPNHGLGIAINNRLERAAAP 321 +P GLG+AIN+RL+RA+ P Sbjct: 325 KAELVPASGLGLAINDRLQRASVP 348 >gi|288574653|ref|ZP_06393010.1| Sua5/YciO/YrdC/YwlC family protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570394|gb|EFC91951.1| Sua5/YciO/YrdC/YwlC family protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 322 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 108/320 (33%), Positives = 160/320 (50%), Gaps = 15/320 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + +A L +G + PTETVYGL D + A+ ++E K RP+ NPLI HV D Sbjct: 13 DREVIDRAVSILKSGGLVGFPTETVYGLGADGLDGKAVSGIFEAKGRPSDNPLILHVGDP 72 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 V+K A VD + + K WPGPLTLVL L + P TA L T R+P Sbjct: 73 ESVRKIAKVDDRADMIMKNLWPGPLTLVLPALPI--VPPEVTAGLDTVGVRMPSHPVALA 130 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L++ P+A PSAN SG+ S T+ + + + LIIDGG +++GLEST+++V E Sbjct: 131 LLQACPFPVAAPSANTSGRPSPTDAVTVARD-LDDRVDLIIDGGATEVGLESTVLDVTGE 189 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL----RAIH 242 V +LRPGGL +E L + E+ V E +SPG HYAP + L + H Sbjct: 190 VPV-LLRPGGLSVEVLADLLG-EIALPVGELELKRSPGTRYRHYAPSVPLILWIPEESGH 247 Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302 + E+ G V + I + ++ LF+ ++ + +I Sbjct: 248 PDFGESCRYIGMVEPVFPVDKSIIFD-----SVESYGRGLFSALRELEREWDGTIVAQWP 302 Query: 303 PNHGLGIAINNRLERAAAPR 322 + G+G+A+ +RL RA+ R Sbjct: 303 DSDGIGLALRDRLRRASGGR 322 >gi|21674532|ref|NP_662597.1| SUA5/YciO/YrdC family protein [Chlorobium tepidum TLS] gi|21647726|gb|AAM72939.1| SUA5/yciO/yrdC family protein [Chlorobium tepidum TLS] Length = 323 Score = 307 bits (788), Expect = 1e-81, Method: Composition-based stats. Identities = 101/323 (31%), Positives = 157/323 (48%), Gaps = 12/323 (3%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 MQ + +TD +A +L+ +A PTETVYGL D+ NP A+ ++++ K RP+ NPL Sbjct: 1 MQTL-VTDRP--EEAASWLNRSETVAFPTETVYGLGADAFNPDAVAKIFKAKGRPSDNPL 57 Query: 61 ICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I HV+ + + A + + L + F+PGPLTLVL + + + +A L T R Sbjct: 58 IVHVATPEQIGEVAAEIGETAKILVERFFPGPLTLVLKKRAA--VPEIVSAGLPTIGVRC 115 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P + + HP+A PSAN SG+ S T+ K + + +I ++ G S IGLES Sbjct: 116 PSHPIASEFLRHCKHPVAAPSANVSGRPSPTDWKTVY-HDLGGKIACLLRGEPSTIGLES 174 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAI-SVELEYCVDETSTPQSPGMLKSHYAPRSQVR 237 TIV+ R+LR G + IE L+ + +E+ P+SPG HY+P +++ Sbjct: 175 TIVDCSVN-PPRLLRTGAVSIELLRELVPDIEIATACKPGEAPKSPGQKYRHYSPEAEII 233 Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297 L + P I + + + E A LF + + D G +I Sbjct: 234 L--VESPPSNLQTDLHAAWIGLAAPPAGAAKSLQCRDMDEYARVLFGFFRTCDAEGIRTI 291 Query: 298 AFSSIPNHGLGIAINNRLERAAA 320 P G+G AI +RL +AA Sbjct: 292 YCELPPEKGIGRAIRDRLVKAAG 314 >gi|312884326|ref|ZP_07744035.1| putative translation factor [Vibrio caribbenthicus ATCC BAA-2122] gi|309368099|gb|EFP95642.1| putative translation factor [Vibrio caribbenthicus ATCC BAA-2122] Length = 320 Score = 307 bits (788), Expect = 1e-81, Method: Composition-based stats. Identities = 97/319 (30%), Positives = 166/319 (52%), Gaps = 8/319 (2%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 Q +S +S + +A + L +G +AIPTETVYGLA D+ NP A+++++ K RPA +PLI Sbjct: 4 QHLSAQNSLDIEQAQKILTSGELVAIPTETVYGLAADASNPDAVKKIFAAKGRPADHPLI 63 Query: 62 CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 H+ + + A + + +AK FWPGP+TL+L+ D + + T L T R+P Sbjct: 64 VHIGRLEQLSDWARDIPQQAYTIAKAFWPGPVTLLLN--KADDANTVVTGGLGTIGIRMP 121 Query: 121 CGFTKK-LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 L+E G +A PSAN ++S T+ H+++S + +I ++DGG GLEST Sbjct: 122 AHPVFSTLLEASGMAVAAPSANPYKKLSPTSAVHVINS-LEGKIAAVLDGGDCHHGLEST 180 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 I+++ + R+LR G + + L + E+ ++ PG + SHY P ++VRL Sbjct: 181 IIDLT-QTPFRVLRSGPISAKQLADVLGEEVLTPTSHSAAV--PGNVTSHYQPNTRVRLV 237 Query: 240 AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF 299 + + ++ + IE +++ + + A +L+ + AD G I Sbjct: 238 SADELSSKPELKVACLHYSAIETNDNIVSIKMPKDVAQYAHDLYRTLNDADKLGCDEIWV 297 Query: 300 SSIPNHGLGIAINNRLERA 318 P +A+++RL RA Sbjct: 298 ERPPLTEDWVAVHDRLNRA 316 >gi|168333894|ref|ZP_02692132.1| hypothetical protein Epulo_03232 [Epulopiscium sp. 'N.t. morphotype B'] Length = 334 Score = 307 bits (788), Expect = 1e-81, Method: Composition-based stats. Identities = 105/336 (31%), Positives = 167/336 (49%), Gaps = 25/336 (7%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M + ++ ++ L A L G + PTETVYGL ++ + A+ +++ K RPA NPL Sbjct: 1 MDTIILSKTDNLELAINILKNGGLVVSPTETVYGLCANALDENAVENIFKAKGRPADNPL 60 Query: 61 ICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I H++ ++M+ + A + + L FWPGPLTL+ S I + ANL+T R Sbjct: 61 IVHIASLAMLDQLVAEISANAQKLIDAFWPGPLTLIF--KSQNIIPNKTRANLQTVAIRF 118 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P +LI+ PLA PSAN SG+ S TN+ ++ + ++ IIDGG KIGLES Sbjct: 119 PENKIIIELIKKSKLPLAAPSANTSGKPSPTNIDRVI-EDLFGKVDCIIDGGNCKIGLES 177 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238 T+V+V + RILRPG + L++ + ++ P +PGM HYAP + V + Sbjct: 178 TVVDVSGDN-ARILRPGFITAAMLEKIVP---SVSAPASAFPIAPGMKYKHYAPSANVAI 233 Query: 239 RAIH---------------VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLF 283 + + A + + I E+ I ++L L+ A NLF Sbjct: 234 VDGNDLQEIAKKICCLIKKDRHKRAGVLIVDEMISFFED-IPVVSLGSITNLESIASNLF 292 Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 ++ DD + + + LG++I NRL +A+ Sbjct: 293 EKLRQLDDLKLEQVYTIYLHDKNLGLSIMNRLLKAS 328 >gi|323491653|ref|ZP_08096832.1| putative translation factor [Vibrio brasiliensis LMG 20546] gi|323314229|gb|EGA67314.1| putative translation factor [Vibrio brasiliensis LMG 20546] Length = 320 Score = 307 bits (788), Expect = 1e-81, Method: Composition-based stats. Identities = 98/319 (30%), Positives = 161/319 (50%), Gaps = 8/319 (2%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 Q +S +D + A + L +G +AIPTETVYGLA D+ NP A+++++ K RPA +PLI Sbjct: 4 QHLSASDKQDIELAKQILASGELVAIPTETVYGLAADASNPEAVKKIFAAKGRPANHPLI 63 Query: 62 CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 H+ ++ + A + + +A FWPGP+TL+L+ P+ T L T R+P Sbjct: 64 VHIGNVEQLSDWARDIPQQAYTIADAFWPGPVTLLLNKAPQAT--PVVTGGLDTIGIRMP 121 Query: 121 CGFTKK-LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 L+++ G +A PSAN ++S T+ +H+L+S + +I ++DGG GLEST Sbjct: 122 AHDVFSTLLKSSGMAVAAPSANPYKKLSPTSAEHVLNS-LGGKISAVLDGGDCAHGLEST 180 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 I+++ EK RILR G + L + + E+ + T PG + SHY P ++VRL Sbjct: 181 IIDLT-EKPFRILRTGPVTAAQLSQVLGEEV--LSPKAHTVAVPGNVTSHYQPNTKVRLV 237 Query: 240 AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF 299 + + +E + + + + +L+ + AD G I Sbjct: 238 TLEEIENATGDNIACLHYSPVELKTGFKSKQMPTDVAQYSHDLYRALDDADKWGCDEIWV 297 Query: 300 SSIPNHGLGIAINNRLERA 318 P A+++RL RA Sbjct: 298 ERPPVSEAWFAVHDRLNRA 316 >gi|146339104|ref|YP_001204152.1| hypothetical protein BRADO2058 [Bradyrhizobium sp. ORS278] gi|146191910|emb|CAL75915.1| conserved hypothetical protein containing Sua5/YciO/YrdC/YwlC domains [Bradyrhizobium sp. ORS278] Length = 333 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 135/307 (43%), Positives = 173/307 (56%), Gaps = 8/307 (2%) Query: 21 AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80 G +A PTETVYGL D+ N AI LY+ K RPA NPLI HV+D + ++ D + Sbjct: 30 RGGLVAFPTETVYGLGADAANAAAIAHLYQAKGRPAFNPLIAHVADAAAARRIGRFDATA 89 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPS 139 LA FWPGPLTLV+ + L+TA L T RVP + L+ +G + PS Sbjct: 90 ERLAAAFWPGPLTLVVPQADQCPVADLATAGLDTVAIRVPAHPTARALLAAFGGAVVAPS 149 Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEI 199 AN SG +S T H+ ++ + I LI+DGG +G+ESTI+ E + LRPGG+ Sbjct: 150 ANISGHVSPTTAAHV-AADLSGRIDLILDGGAVDVGVESTIIGCFAEPTL--LRPGGVPS 206 Query: 200 ETLKRAISVELEYC----VDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNV 255 E ++ + L P +PGML SHYAP + VRL A +V P EAL+ FG V Sbjct: 207 EAIEAVLGQPLARLAVAEAHAAEQPLAPGMLASHYAPHAAVRLDATNVAPDEALLAFGPV 266 Query: 256 PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRL 315 + A LNLS G EAA +LF Y++ D SGA SIA IPN GLG AIN+RL Sbjct: 267 TLPGAAQAAAILNLSPVGDPAEAATHLFGYLRSLDASGARSIAVMPIPNDGLGEAINDRL 326 Query: 316 ERAAAPR 322 RAAAPR Sbjct: 327 RRAAAPR 333 >gi|251771701|gb|EES52276.1| Sua5/YciO/YrdC/YwlC family protein [Leptospirillum ferrodiazotrophum] Length = 357 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 101/328 (30%), Positives = 161/328 (49%), Gaps = 19/328 (5%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + L +A L+AGL + PTETVYGL D+ NP A+RR+YEIK RPA +PLI H++ + Sbjct: 29 PDDLERAALRLEAGLTVVFPTETVYGLGADASNPEAVRRIYEIKGRPADHPLIVHIAGLG 88 Query: 69 MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 ++ A + P + L + FWPGPLTL+L ++ T T RVP Sbjct: 89 DLEAWADPIPPEAWRLGERFWPGPLTLILPCRG--EVPKAVTGGRDTIAVRVPAHPVAAA 146 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L++ +G +A PSANR G++S T H+ +E ++++GG +IG+ESTIV++ E Sbjct: 147 LLKAFGRGIAAPSANRFGRLSPTTSGHV-REEFGEEAGMVLEGGPCRIGVESTIVSLVGE 205 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL-------- 238 + ILRPG L + + ++ + P +PG HYAP++ + + Sbjct: 206 TPL-ILRPGALTAGQIGEVLGRKIGGASEGQVVPAAPGSHSVHYAPKTPLEILSGTHLPG 264 Query: 239 ---RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 R I + ++ + + ++ + E A L+ + D SG Sbjct: 265 RVFRTIRAGEKAGILALTQGAGSFGSDKVATILMPSRAD--EYARELYAALHRLDRSGCD 322 Query: 296 SIAFSSIPNHGLGIAINNRLERAAAPRN 323 + P IA+ +RL RA A R+ Sbjct: 323 RLFAERPPATEEWIAVRDRLGRACAGRS 350 >gi|199597585|ref|ZP_03211014.1| Putative translation factor (SUA5) [Lactobacillus rhamnosus HN001] gi|199591608|gb|EDY99685.1| Putative translation factor (SUA5) [Lactobacillus rhamnosus HN001] Length = 340 Score = 306 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 104/325 (32%), Positives = 162/325 (49%), Gaps = 15/325 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A L G +A PTETVYGL D+ N TA+ ++Y K RP+ NPLI V+D + Sbjct: 7 ESDIPEAAAALKRGELVAFPTETVYGLGADATNVTAVSQVYAAKGRPSDNPLIVTVADAA 66 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 MV ++A++ P + L FWPGPLT++L++L + T L+TA FR P T+KL Sbjct: 67 MVSQYATITPDAAKLMDTFWPGPLTIILNVLPGR-LSMKVTGGLQTAAFRNPDDALTRKL 125 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I T G P+ PSAN SG+ S T H+L + +I ++D G +++G+ESTI+++ Sbjct: 126 IATAGVPIVGPSANTSGKPSPTTADHVL-HDLADKIAGVLDDGPTRVGVESTIIDLTVTP 184 Query: 188 KVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245 ILRPG + L+ + + V + P++PGM HYAP +QV + Sbjct: 185 PA-ILRPGAIGPHELEPLLGPVDSAAHHVGKNEAPKAPGMKYKHYAPAAQVVVVDTIDQF 243 Query: 246 REALIR-------FGNVPIKNIENAIISLNLSKTG-KLKEAAFNLFNYMKIAD-DSGASS 296 +A+ FG + I + G + A LF ++ D + Sbjct: 244 DDAVAWAKKTGQTFGLLATDPILAHFPDVPSYSLGQDITSATHALFAGLRWFDLHPDVTL 303 Query: 297 IAFSSIPNHGLGIAINNRLERAAAP 321 + + L A NRL ++A Sbjct: 304 VLAQAFSYSELSAAYMNRLLKSAGN 328 >gi|94497450|ref|ZP_01304020.1| putative translation factor [Sphingomonas sp. SKA58] gi|94423081|gb|EAT08112.1| putative translation factor [Sphingomonas sp. SKA58] Length = 318 Score = 306 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 129/313 (41%), Positives = 185/313 (59%), Gaps = 12/313 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +LR+A + AG P+A+PTETVYGLA D+ + A+ +Y K RP+ NPLI HV+ + Sbjct: 17 AESLREAALLIRAGEPVAVPTETVYGLAADATDNNAVAAIYSAKGRPSFNPLIVHVAHMD 76 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKL 127 M + A + + LA FWPGPLT+VL + + + + L TA L T R+P + L Sbjct: 77 MARSLAHLSTTAETLAAQFWPGPLTMVLPVRADSGLSHLVTAGLPTVALRLPAHPAMRAL 136 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I G PLA PSANRSG IS T +H+L +S+ ++ +++D G + GLESTI Sbjct: 137 IRESGRPLAAPSANRSGSISPTRAEHVL-ASLNGKVRMVLDEGPTSEGLESTI-AAPEAD 194 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 ++R+LRPG + L +A + + + + ++PG L+SHYAP VRL A+ E Sbjct: 195 RIRLLRPGPVTAAMLGKATGLPVVVGL-ADAAIEAPGQLESHYAPAKAVRLEALRAEADE 253 Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307 LI FG +P +NLS L+EA NLF + IAD S A+ IA + IP G+ Sbjct: 254 YLIGFGLMPCH--------INLSPEANLREAGANLFAALHIADASTAARIAVAPIPPEGI 305 Query: 308 GIAINNRLERAAA 320 G+AIN+RL+RAAA Sbjct: 306 GVAINDRLKRAAA 318 >gi|312142774|ref|YP_003994220.1| Sua5/YciO/YrdC/YwlC family protein [Halanaerobium sp. 'sapolanicus'] gi|311903425|gb|ADQ13866.1| Sua5/YciO/YrdC/YwlC family protein [Halanaerobium sp. 'sapolanicus'] Length = 350 Score = 306 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 115/340 (33%), Positives = 173/340 (50%), Gaps = 20/340 (5%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 I + D A+ KA E L G +AIPTETVYGLA D+ NP A++R++E K RP NPLI Sbjct: 8 IKANNDDQAVEKAAELLHKGELVAIPTETVYGLAADALNPEAVKRIFEAKGRPQDNPLII 67 Query: 63 HVSDISMVKKHA--SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 H+ ++K V + L +WPGPLTL+ ++ + ++A L T R+P Sbjct: 68 HIGAQKDLEKLIAEKVSKRAQKLIDKYWPGPLTLIF--KKSSLVPAETSAGLDTVAVRMP 125 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 T KL++ G LA PSAN SG S T +H+ + + +IPLI+DGG ++G+EST Sbjct: 126 SHPVTIKLLQKSGLVLAAPSANTSGYPSPTRAEHVY-ADLKTKIPLILDGGSCEVGVEST 184 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEY---CVDETSTPQSPGMLKSHYAPRSQV 236 ++++ +K+ +LRPGG+ E L + EL+ T SPGM HYAP+ + Sbjct: 185 VIDL-SQKEAVVLRPGGISREELAEFLGEELKLNNNLEKSTQGVISPGMKYRHYAPQKNL 243 Query: 237 R---------LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMK 287 L + ALI + E+ + + K E A LF ++ Sbjct: 244 YIFDPVKKDLLFKKAEQKKIALIISRQTELGQKEDQLKVIRAFDREKPAELARKLFALLR 303 Query: 288 IAD-DSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326 D D I + GLG + NR+ +AAA ++++Q Sbjct: 304 ELDSDPEVEEIYIEELKEEGLGETLMNRIYKAAAAKDEAQ 343 >gi|315925283|ref|ZP_07921495.1| Sua5/YciO/YrdC/YwlC family protein [Pseudoramibacter alactolyticus ATCC 23263] gi|315621404|gb|EFV01373.1| Sua5/YciO/YrdC/YwlC family protein [Pseudoramibacter alactolyticus ATCC 23263] Length = 346 Score = 306 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 99/333 (29%), Positives = 161/333 (48%), Gaps = 24/333 (7%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ + + + G + PTETVYGL ++ +P AI +++E K RPA NPLI H++D Sbjct: 15 AQSIARCGQIIRDGGTVVFPTETVYGLGANAFDPAAIAKIFEAKGRPADNPLIVHIADWD 74 Query: 69 MVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKK 126 + + A V + LA+ +WPGP+T++L + + TA L T R P ++ Sbjct: 75 QISELVAEVPEKARQLAEAYWPGPMTMILRRSAA--VPDAVTAGLGTVGIRFPSNPYARQ 132 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LI G P+A PSAN SG+ S T +H+L + K + I+ S +GLEST++++ Sbjct: 133 LIVASGVPIAAPSANISGRPSPTRGRHVLEDMLEK-VDAILVADESDVGLESTVIDMTS- 190 Query: 187 KKVRILRPGGLEIETLKRAIS-VELEYCVDETSTP---QSPGMLKSHYAPRSQVRLRAIH 242 +LRPGG+ + ++R I V + P +SPGM HYAP ++ + Sbjct: 191 IPPTVLRPGGITVADIERVIGPVAVSPNTTRPVIPEEVRSPGMKYRHYAPHGRMVIARGS 250 Query: 243 VNPREALIRFGNVPIKNIENAII--------------SLNLSKTGKLKEAAFNLFNYMKI 288 + A I +K + + L+L NLF+ ++ Sbjct: 251 DGEKAAKINAAIDGLKAQDKPAVLATDETLGHYRRGMILSLGSQTDPAAMGHNLFDCLRA 310 Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 DD GA+ I +P +A+ NRL +AA Sbjct: 311 FDDLGATHIFAEDVPVGNDTLALINRLYKAAGY 343 >gi|258508168|ref|YP_003170919.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus rhamnosus GG] gi|257148095|emb|CAR87068.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus rhamnosus GG] gi|259649485|dbj|BAI41647.1| translational factor [Lactobacillus rhamnosus GG] Length = 340 Score = 306 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 104/325 (32%), Positives = 162/325 (49%), Gaps = 15/325 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A L G +A PTETVYGL D+ N TA+ ++Y K RP+ NPLI V+D + Sbjct: 7 ESDIPEAAAALKRGELVAFPTETVYGLGADATNVTAVSQVYAAKGRPSDNPLIVTVADAA 66 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 MV ++A++ P + L FWPGPLT++L++L + T L+TA FR P T+KL Sbjct: 67 MVSQYATITPDAAKLMDTFWPGPLTIILNILPGR-LSMKVTGGLQTAAFRNPDDALTRKL 125 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I T G P+ PSAN SG+ S T H+L + +I ++D G +++G+ESTI+++ Sbjct: 126 IATAGVPIVGPSANTSGKPSPTTADHVL-HDLADKIAGVLDDGPTRVGVESTIIDLTVTP 184 Query: 188 KVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245 ILRPG + L+ + + V + P++PGM HYAP +QV + Sbjct: 185 PA-ILRPGAIGPHELEPLLGPVDSAAHHVGKNEAPKAPGMKYKHYAPAAQVVVVDTIDQF 243 Query: 246 REALIR-------FGNVPIKNIENAIISLNLSKTG-KLKEAAFNLFNYMKIAD-DSGASS 296 +A+ FG + I + G + A LF ++ D + Sbjct: 244 DDAVAWAKKTGQTFGLLATDPILAHFPDVPSYSLGQDITSATHALFAGLRWFDLHPDVTL 303 Query: 297 IAFSSIPNHGLGIAINNRLERAAAP 321 + + L A NRL ++A Sbjct: 304 VLAQAFSYSELSAAYMNRLLKSAGN 328 >gi|255731390|ref|XP_002550619.1| protein SUA5 [Candida tropicalis MYA-3404] gi|240131628|gb|EER31187.1| protein SUA5 [Candida tropicalis MYA-3404] Length = 385 Score = 306 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 110/347 (31%), Positives = 169/347 (48%), Gaps = 36/347 (10%) Query: 5 SITDS---NALRKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 +ITD N L+ A + L I PTETVYGLA S ++R +Y K RPA NPL Sbjct: 37 TITDEETLNNLQTAAKELTTTNNAIGFPTETVYGLAGSSLKDESVRSIYRAKNRPADNPL 96 Query: 61 ICHVSDISMVKK----HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 I H+S I +K+ + + L + FWPGPLT++L + I L TAN T Sbjct: 97 ITHISSIDQLKRKLINQEEIPSIYNKLIEKFWPGPLTILLPISKNCPISKLVTANQDTFA 156 Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R+P + LI P+A PSAN S + S T +H+ + + +IP+I+DGG +G Sbjct: 157 VRMPNHPVARALISISDTPIAAPSANASTRPSPTLAEHVYND-LNGKIPIILDGGACDVG 215 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELE------YCVDETSTPQSPGMLKSH 229 +EST+++ + + +LRPGG+ +E +K+ E E + ++PGM H Sbjct: 216 VESTVIDGLVDPPM-LLRPGGVSLEEIKKYGGKEWENVIIAKKTAGKLEPVKTPGMKYRH 274 Query: 230 YAPRSQVRLRAIHVNPREALIRF----------------GNVPIKNIENAIISLNLSKTG 273 Y+P ++V L + +EA++ + + ++E I L K G Sbjct: 275 YSPTAKVILFVNCGDGKEAILNYLKQNNIDCNNTKIALLKSCNFVDVEGVAIIKELGKNG 334 Query: 274 KLKEAAFNLFNYMKIADDSG-ASSIAFSSIPNHGLGIAINNRLERAA 319 E + NLF Y++ D+ I I G+A+ NRL +AA Sbjct: 335 H--EISHNLFKYLREVDEEDKVDLILVEGIDETNEGLAVMNRLSKAA 379 >gi|160945366|ref|ZP_02092592.1| hypothetical protein FAEPRAM212_02888 [Faecalibacterium prausnitzii M21/2] gi|158443097|gb|EDP20102.1| hypothetical protein FAEPRAM212_02888 [Faecalibacterium prausnitzii M21/2] Length = 344 Score = 306 bits (785), Expect = 2e-81, Method: Composition-based stats. Identities = 107/344 (31%), Positives = 169/344 (49%), Gaps = 29/344 (8%) Query: 1 MQIMS---ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 M+I + D + +A + L G +A+PTETVYG+A D+RN A+R ++ K RP Sbjct: 4 MKIKTRVLPADEAGVAEAAQLLRQGQLVALPTETVYGIAADARNGAAVRDIFVAKGRPQD 63 Query: 58 NPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 NPLI HV+ M+ V + L F PGPLT+++ ++ A L T Sbjct: 64 NPLIVHVTGPEMLPGLVSEVPERAQLLMAAFCPGPLTIIMPRGP--EVADECCAGLDTVG 121 Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R+P + +I+ G A PSAN SG+ S TN + + + + +PLI+DGG +G Sbjct: 122 IRMPSHPVARAVIQQSGCAFAAPSANLSGKPSPTNAQDVFTD-MDGRLPLILDGGECDVG 180 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYC------VDETSTPQSPGMLKSH 229 +EST+V+V +K + RPG + +E L+RA+ E+E + E + +SPGM H Sbjct: 181 VESTVVSVVGDKP-TLFRPGHITLEDLERALGEEVEVSKAILEKLPEGAVVRSPGMKYKH 239 Query: 230 YAPRSQVRL-----------RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEA 278 YAP++ V L H + + + F K + + + G + Sbjct: 240 YAPKADVTLLNGTFAQFKAYVDAHKDENPSCLCFTGESAKLD---VPCVEYGREGDGADQ 296 Query: 279 AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 A ++F ++ D+ G + GL +A+ NRL RAAA R Sbjct: 297 AKHIFRSLRALDEQGDGVVYARCPQKDGLSMAVYNRLIRAAAFR 340 >gi|153812520|ref|ZP_01965188.1| hypothetical protein RUMOBE_02919 [Ruminococcus obeum ATCC 29174] gi|149831445|gb|EDM86533.1| hypothetical protein RUMOBE_02919 [Ruminococcus obeum ATCC 29174] Length = 354 Score = 306 bits (785), Expect = 2e-81, Method: Composition-based stats. Identities = 104/336 (30%), Positives = 169/336 (50%), Gaps = 25/336 (7%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D +A++KA + L AG +A PTETVYGL ++ +P A ++Y K RP+ NPLI H++++ Sbjct: 14 DMDAIKKAGDILKAGGLVAFPTETVYGLGGNALDPQASMKIYAAKGRPSDNPLIVHIAEL 73 Query: 68 SMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 ++K + P LA+ +WPGPLT++L + +T L + R P + Sbjct: 74 EQLEKITTEIPEGAKILAEKYWPGPLTMILPKADI--VPRETTGGLDSVAVRFPSDRIAQ 131 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +LI+ G +A PSAN SG+ S T +H+ + I +IIDGG IGLESTIV+ Sbjct: 132 ELIKAGGGFVAAPSANTSGRPSPTMAEHV-EEDLGDAIDMIIDGGQVGIGLESTIVDFT- 189 Query: 186 EKKVRILRPGGLEIETLKRAIS-VELEYC---VDETSTPQSPGMLKSHYAPRSQVRLRAI 241 EK +LRPG + +E L+ + V ++ D + P++PGM HYAP++ + + Sbjct: 190 EKVPVVLRPGYISLEMLQETLGDVRMDKGLLITDSSVHPKAPGMKYRHYAPKADLSIIEG 249 Query: 242 HVNPREALI------------RFGNVPIKNIENAII---SLNLSKTGKLKEAAFNLFNYM 286 + A I + G + + L++ + + A +L+ + Sbjct: 250 NEEDVVACINHLTDEAVAKGLKVGVIATDETKARYAHADVLSIGSREEEETIAHHLYEVL 309 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 + DD I + +G AI NRL +AA + Sbjct: 310 RDFDDDRVDVIYSEAFYTPKMGQAIMNRLLKAAGHK 345 >gi|241957109|ref|XP_002421274.1| protein required for respiratory growth, putative [Candida dubliniensis CD36] gi|223644618|emb|CAX40606.1| protein required for respiratory growth, putative [Candida dubliniensis CD36] Length = 382 Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 107/346 (30%), Positives = 165/346 (47%), Gaps = 32/346 (9%) Query: 2 QIMSITDSNALRKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 QI L+ A + L I PTETVYGLA + + ++R +Y+ K RPA NPL Sbjct: 32 QISDNETLTNLQIAAKELTTTHNAIGFPTETVYGLAGSALSDESVRSIYKAKNRPADNPL 91 Query: 61 ICHVSDISMVKK---HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 I H+S I +K+ + + + L+L FWPGPLT++L + + I L TAN T Sbjct: 92 IVHISSIEQLKRKLINYEIPQIYLNLISHFWPGPLTILLPITKDSPISKLVTANQNTFAV 151 Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P + LI P+A PSAN S + S T +H+ + +IPLI+DGG +G+ Sbjct: 152 RMPNHPVARALIAMSDTPIAAPSANASTRPSPTLAEHVY-HDLNGKIPLILDGGACDVGV 210 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTP------QSPGMLKSHY 230 EST+++ + + +LRPGG+ +E +KR E+ + T ++PGM HY Sbjct: 211 ESTVIDGLVDPPM-LLRPGGVSLEDIKRVGGKPWEHIIVAKKTAGKLEPVKTPGMKYRHY 269 Query: 231 APRSQVRLRAIHVNPREALIRF----------------GNVPIKNIENAIISLNLSKTGK 274 +P ++V L + A+ + + + L TG Sbjct: 270 SPTAKVVLFVNCGDGINAIESYLTNNKLDASATKIALLKSKHFSEDHPDFVIKRLGTTGN 329 Query: 275 LKEAAFNLFNYMKIADDSG-ASSIAFSSIPNHGLGIAINNRLERAA 319 E + NLF Y++ D+ I I G+A+ NRL +AA Sbjct: 330 --EISHNLFKYLREVDEEDKVELIFVEGIDETNEGLAVMNRLSKAA 373 >gi|294101619|ref|YP_003553477.1| Sua5/YciO/YrdC/YwlC family protein [Aminobacterium colombiense DSM 12261] gi|293616599|gb|ADE56753.1| Sua5/YciO/YrdC/YwlC family protein [Aminobacterium colombiense DSM 12261] Length = 326 Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 107/316 (33%), Positives = 162/316 (51%), Gaps = 11/316 (3%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 + + + +A + +G +A PTETVYGL + + A+R+++ K RP NPLI H + Sbjct: 14 EPHIIAEAAYAIRSGKLVAFPTETVYGLGANGLDDGAVRKIFAAKGRPGDNPLILHFASS 73 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 V++ A V+ + L FWPGPLTLVL + + TA L T R+P Sbjct: 74 EDVEQVAYVNERAKLLMDSFWPGPLTLVLP--AKPVVPNSVTAGLGTVAVRMPSHPVAMA 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LI+ G P+A PSANRSG+ S T +L + I ++ +I+DGG + +GLEST+++V Sbjct: 132 LIKVAGVPIAAPSANRSGRPSPTEAASVL-ADIGDDVDIILDGGATDVGLESTVIDVTG- 189 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR---AIHV 243 V +LR GG+ +E L+ I E++ DE +SPG HYAP + L + Sbjct: 190 PSVVLLRAGGMPVERLEEVIE-EVKLVPDEAKKKRSPGTRYRHYAPLIPLLLWKNGVLRH 248 Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303 +P R G + IK + L KT + A LF + + G I Sbjct: 249 SPLVMGKRIGYIGIKEPPFPVEEKILFKT--PENYAQGLFLAFRTFEKKGIEVIVAEWPN 306 Query: 304 NHGLGIAINNRLERAA 319 + G+G+A+ +RL RAA Sbjct: 307 SKGIGLALRDRLSRAA 322 >gi|67468340|ref|XP_650214.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS] gi|56466800|gb|EAL44828.1| hypothetical protein, conserved [Entamoeba histolytica HM-1:IMSS] Length = 357 Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 107/329 (32%), Positives = 157/329 (47%), Gaps = 23/329 (6%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 DS + A + + G + PTETVYGL D P AI +++++K RP NPLICH+SDI Sbjct: 28 DSKLITPAAKIIQQGGLVCFPTETVYGLGADVFQPNAINQIFKVKGRPNDNPLICHISDI 87 Query: 68 SMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 M+ K A V + L K FWPG LT++ + TA L T R+P Sbjct: 88 EMLNKLAAHVSEDAHKLIKRFWPGALTIIFPR--NEAVPNEVTAGLNTVGVRMPSHPIAY 145 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 + I+ G P+A PSAN S + S T +H + + I +IIDGG IG+EST++ + Sbjct: 146 EFIKQCGTPIAAPSANLSTKPSPTIGRHCI-DDLNGRIEMIIDGGSCDIGVESTVL-MLG 203 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDET----STPQSPGMLKSHYAPRSQV----- 236 ILRPGG+ +E L+ I Y + + P +PGM HYAP Sbjct: 204 NDHPTILRPGGVTLEMLREVIPSTQVYKMSTNLSLEAKPPTPGMKYRHYAPSVDTIVITG 263 Query: 237 -----RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGK-LKEAAFNLFNYMKIAD 290 +L + ++ + G V ++E+ +L + TG K A LF M+ D Sbjct: 264 DKRSEKLIELCHEYMKSGKKVGVVCW-SLESLDCTLFMKVTGDKYKGMAHALFTDMRDLD 322 Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAA 319 I + G+A+ NR ++AA Sbjct: 323 -GKVDIILIEGVQEIKEGLAVMNRAKKAA 350 >gi|294793889|ref|ZP_06759026.1| Sua5/YciO/YrdC/YwlC family protein [Veillonella sp. 3_1_44] gi|294455459|gb|EFG23831.1| Sua5/YciO/YrdC/YwlC family protein [Veillonella sp. 3_1_44] Length = 347 Score = 306 bits (784), Expect = 3e-81, Method: Composition-based stats. Identities = 99/340 (29%), Positives = 164/340 (48%), Gaps = 25/340 (7%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +I++ + L G ++IPTETVYGL + +P A+ ++Y K RP+ NPLI Sbjct: 8 KIITNPSEQDIDTLARALRNGELVSIPTETVYGLGANGLDPEAMDKIYAAKGRPSDNPLI 67 Query: 62 CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 HV + +K + + L FWPGPLT+ L + + +T L R P Sbjct: 68 LHVPNSESIKPLVTEISATAQALMDAFWPGPLTITLP--KSDLVPDRATGGLPRVALRCP 125 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + L+E G P+A PSAN SG+ S T + + + I I+D G IG+EST Sbjct: 126 DHKVCRALLERAGVPVAAPSANISGRPSPTTAQDVY-HDMKGRISYILDAGPCTIGVEST 184 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEY---CVDETSTPQSPGMLKSHYAPRSQV 236 +V V + KV ILRPGG+ L+ +S +EY V+ T+ P++PGM +HYAP + + Sbjct: 185 VVEVH-DDKVIILRPGGITKAQLEGVVST-VEYDTALVNATTKPKAPGMKYTHYAPDAPM 242 Query: 237 RLRAIHVNPREALIRFGNVPIKNIENAIIS---LNLSKT------------GKLKEAAFN 281 + + ++ + + I+ ++S NL K G + Sbjct: 243 TVVVGNPEDIASMFKALSEGIEGPIGCLVSHETYNLIKEDGRFMCHCFGHHGDALALGHD 302 Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 + + +++ + I + + G G+AI NR+E+A++ Sbjct: 303 FYKSLLHFNENHVTLILAEGVDDDGFGVAIMNRMEKASSH 342 >gi|68471205|ref|XP_720379.1| hypothetical protein CaO19.7088 [Candida albicans SC5314] gi|77022446|ref|XP_888667.1| hypothetical protein CaO19_7088 [Candida albicans SC5314] gi|46442244|gb|EAL01535.1| hypothetical protein CaO19.7088 [Candida albicans SC5314] gi|76573480|dbj|BAE44564.1| hypothetical protein [Candida albicans] Length = 382 Score = 305 bits (783), Expect = 4e-81, Method: Composition-based stats. Identities = 103/322 (31%), Positives = 158/322 (49%), Gaps = 31/322 (9%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK---HASVDPLSL 81 I PTETVYGLA + + +++ +Y+ K RPA NPLI H+S I +K+ + + + L Sbjct: 56 IGFPTETVYGLAGSALSDESVKSIYKAKNRPADNPLIVHISSIEQLKRKLINYEIPQVYL 115 Query: 82 HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140 L FWPGPLT++L + + I L TAN T R+P + LI P+A PSA Sbjct: 116 DLISHFWPGPLTILLPITKDSPISKLVTANQDTFAVRMPNHPVARALIAMSDTPIAAPSA 175 Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200 N S + S T +H+ + +IPLI+DGG +G+EST+++ + + +LRPGG+ +E Sbjct: 176 NASTRPSPTLAEHVY-HDLNGKIPLILDGGACNVGVESTVIDGLVDPPM-LLRPGGVSLE 233 Query: 201 TLKRAIS------VELEYCVDETSTPQSPGMLKSHYAPRSQVRL--------RAIHVNPR 246 +KR V + + ++PGM HY+P ++V L AI Sbjct: 234 DIKRVGGKLWENIVVAKKTAGKLEPVKTPGMKYRHYSPTAKVVLFVNCGDGINAIENYLT 293 Query: 247 EALIRFGNVPIKNIENA--------IISLNLSKTGKLKEAAFNLFNYMKIADDSG-ASSI 297 + I +++ I L TG E + NLF Y++ D+ I Sbjct: 294 NNKVDASTTKIALLKSKHFGEDHPHFIIKRLGTTGN--EISHNLFKYLREVDEEDKVELI 351 Query: 298 AFSSIPNHGLGIAINNRLERAA 319 I G+A+ NRL +AA Sbjct: 352 FVEGIDETNEGLAVMNRLSKAA 373 >gi|325971426|ref|YP_004247617.1| Sua5/YciO/YrdC/YwlC family protein [Spirochaeta sp. Buddy] gi|324026664|gb|ADY13423.1| Sua5/YciO/YrdC/YwlC family protein [Spirochaeta sp. Buddy] Length = 437 Score = 305 bits (783), Expect = 5e-81, Method: Composition-based stats. Identities = 108/324 (33%), Positives = 171/324 (52%), Gaps = 9/324 (2%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 I SI +++ L G +A PTETVYGL D+ N A++ ++ K+RP +PLI Sbjct: 117 IPSIQLPKLIKEQAALLAQGKLVAFPTETVYGLGADALNEEAVKSIFAAKQRPFFDPLIV 176 Query: 63 HVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120 H++ + ++ +DP + L FWPGPLTLVL + + + TAN +T R+P Sbjct: 177 HIAKLEQLEGLVVDLDPRARLLMDHFWPGPLTLVLKKHPS--VPAIVTANSQTVAIRMPS 234 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 LI+ G +A PSANR G S T H+ + + I I+DGG +G+EST+ Sbjct: 235 NPLALNLIQASGKAIAAPSANRFGYTSPTTATHV-KEQLGERIDAILDGGACTVGIESTV 293 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCVDETSTP-QSPGMLKSHYAPRSQVRL 238 +++ E ILRPG + IE LK + V + V T T +SPG+L+SHYAP + + L Sbjct: 294 LSLCTEIP-TILRPGKIGIEELKPLLGEVIVTKQVGPTDTHLESPGLLESHYAPTTPLYL 352 Query: 239 -RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297 + + ++ + + + + +S+T +EAA L+ ++ D + Sbjct: 353 VDDVTLYKDQSDVGVLLFEKQKVPFKGPVVYVSETENAEEAASRLYWAIRHLDTMHLRCM 412 Query: 298 AFSSIPNHGLGIAINNRLERAAAP 321 S +P G+G+AINNRL +A+A Sbjct: 413 VGSLLPEVGIGVAINNRLRKASAK 436 >gi|148553004|ref|YP_001260586.1| translation factor SUA5 [Sphingomonas wittichii RW1] gi|148498194|gb|ABQ66448.1| translation factor SUA5 [Sphingomonas wittichii RW1] Length = 313 Score = 305 bits (783), Expect = 5e-81, Method: Composition-based stats. Identities = 134/316 (42%), Positives = 191/316 (60%), Gaps = 13/316 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + +A + GLP+ +PTETVYGLA D+ + A+ +Y K RP+ NPLI HV+D+ Sbjct: 10 DPTGIAEAAALIARGLPVGVPTETVYGLAGDATSGEAVAAIYAAKGRPSFNPLIVHVTDL 69 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KK 126 +M + A + PL+ LA+ FWPGPLT+VL + I L+TA L + R+P + Sbjct: 70 AMAGRVAILPPLARRLAERFWPGPLTMVLPAAPGSPIASLTTAGLPSVAVRMPAHPAIRA 129 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LI G PLA PSAN SG IS T +H+ S + I L++D G + +G+ESTIV V+ + Sbjct: 130 LILASGRPLAAPSANASGSISATRAEHVARS-LAGRITLVLDDGPTAVGIESTIVAVETD 188 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246 ++R+LRPG + +E L A V +E D + ++PG + SHYAP +RL A Sbjct: 189 -RLRLLRPGAIIVEMLAEAAGVAVERRGDGS--IEAPGQMASHYAPSKPLRLNAERAKAG 245 Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306 E LI FG V + LS +G+L EAA LF+ + AD S A++IA + +P+ G Sbjct: 246 EYLIGFGAVAGD--------VTLSASGRLDEAAARLFDLLHAADQSDAAAIAVAPVPSDG 297 Query: 307 LGIAINNRLERAAAPR 322 LG+AIN+RL+RAAAPR Sbjct: 298 LGLAINDRLQRAAAPR 313 >gi|18313733|ref|NP_560400.1| sua5 family protein [Pyrobaculum aerophilum str. IM2] gi|18161288|gb|AAL64582.1| sua5 family protein [Pyrobaculum aerophilum str. IM2] Length = 343 Score = 305 bits (783), Expect = 5e-81, Method: Composition-based stats. Identities = 96/326 (29%), Positives = 153/326 (46%), Gaps = 13/326 (3%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D ++ A E L G +A PTETVYGL + ++++ K RP NPLI HV + Sbjct: 12 DPEVIKTAAEVLKNGGIVAAPTETVYGLFTHAYREDGCVKVFKAKGRPMDNPLIVHVDSV 71 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KK 126 M + A + + WPGP+T+V+ + TA L T R P Sbjct: 72 EMASEIAEIPEGIRGVLAQLWPGPVTIVVKSRGV--VPRCVTAGLNTVAVRAPAHPIPLA 129 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 +I+ P+A PSAN++G+ S T HIL + E+ LIIDGG + G+ESTI++V Sbjct: 130 IIKELNAPIAGPSANKAGRPSPTTATHIL-EDLGDEVDLIIDGGPTFFGVESTIIDVT-R 187 Query: 187 KKVRILRPGGLEIETLKRAIS----VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242 K +LRPG +E L++ + + E +PGM HYAP + + + Sbjct: 188 KPPALLRPGPFTVEELEKFFGEIQIPPVARGLAEAEVALAPGMKYKHYAPDTMLVIVHFD 247 Query: 243 VNPREALIRFGNVPIKNI----ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIA 298 + +++ + + + + A +L L E A NL+ ++ D + Sbjct: 248 LAEAVKVLKARGLKVAVLCAAGKCADADASLHLGTDLYEVAKNLYKSLRDLDKLSVNIGI 307 Query: 299 FSSIPNHGLGIAINNRLERAAAPRNQ 324 ++ G+G+AI NR+ +AAA R Sbjct: 308 IPAVEERGIGLAIMNRIRKAAAHREA 333 >gi|110597199|ref|ZP_01385488.1| Sua5/YciO/YrdC/YwlC [Chlorobium ferrooxidans DSM 13031] gi|110341390|gb|EAT59855.1| Sua5/YciO/YrdC/YwlC [Chlorobium ferrooxidans DSM 13031] Length = 315 Score = 305 bits (783), Expect = 5e-81, Method: Composition-based stats. Identities = 107/328 (32%), Positives = 160/328 (48%), Gaps = 21/328 (6%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 MQ + +TDS +A L++G +A PTETVYGL +P AI ++++ K RP NPL Sbjct: 1 MQTI-LTDST--EEAARILNSGCVVAFPTETVYGLGACICHPEAIGKIFQAKGRPGDNPL 57 Query: 61 ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I H+ +I + A ++ + L + F+PGPLTLVL + + TA L T R Sbjct: 58 IVHIYNIKQLDDVASEINESAEKLIERFFPGPLTLVL--KKNKSVPDIVTAGLDTVGVRC 115 Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P ++ + P+A PSAN SG S T+ H + + I I+ G S IGLES Sbjct: 116 PANPVAREFLRLACGPVAAPSANLSGLPSSTSW-HAVFKDLDGRISCILKGEESTIGLES 174 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAI-SVELEYCVDETSTPQSPGMLKSHYAPRSQVR 237 TIV+ V +LR G + E L+ + + L + S P+SPG+ HYAP++ + Sbjct: 175 TIVDCSGASPV-LLRAGAITFEALQEVVPGITLNAGTGKESRPKSPGLKYLHYAPKASIV 233 Query: 238 L----RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293 L I P A I P + + A ++ +E LF++ ++ D G Sbjct: 234 LCTPHEPITAEPDSAYIGLSR-PPEGVRVARHCIS------PEEYGRELFSFFRLCDAEG 286 Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAAP 321 I + G+G AI +RL RAA Sbjct: 287 IRVIYCELPSSTGIGRAIRDRLTRAAGK 314 >gi|238883207|gb|EEQ46845.1| protein SUA5 [Candida albicans WO-1] Length = 382 Score = 305 bits (783), Expect = 5e-81, Method: Composition-based stats. Identities = 103/322 (31%), Positives = 158/322 (49%), Gaps = 31/322 (9%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK---HASVDPLSL 81 I PTETVYGLA + + +++ +Y+ K RPA NPLI H+S I +K+ + + + L Sbjct: 56 IGFPTETVYGLAGSALSDESVKSIYKAKNRPADNPLIVHISSIEQLKRKLINYEIPQVYL 115 Query: 82 HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140 L FWPGPLT++L + + I L TAN T R+P + LI P+A PSA Sbjct: 116 DLISHFWPGPLTILLPITKDSPISKLVTANQDTFAVRMPNHPVARALIAMSDTPIAAPSA 175 Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200 N S + S T +H+ + +IPLI+DGG +G+EST+++ + + +LRPGG+ +E Sbjct: 176 NASTRPSPTLAEHVY-HDLNGKIPLILDGGACDVGVESTVIDGLVDPPM-LLRPGGVSLE 233 Query: 201 TLKRAIS------VELEYCVDETSTPQSPGMLKSHYAPRSQVRL--------RAIHVNPR 246 +KR V + + ++PGM HY+P ++V L AI Sbjct: 234 DIKRVGGKLWENIVVAKKTAGKLEPVKTPGMKYRHYSPTAKVVLFVNCGDGINAIENYLT 293 Query: 247 EALIRFGNVPIKNIENA--------IISLNLSKTGKLKEAAFNLFNYMKIADDSG-ASSI 297 + I +++ I L TG E + NLF Y++ D+ I Sbjct: 294 NNKVDASTTKIALLKSKHFGEDHPHFIIKRLGTTGN--EISHNLFKYLREVDEEDKVELI 351 Query: 298 AFSSIPNHGLGIAINNRLERAA 319 I G+A+ NRL +AA Sbjct: 352 FVEGIDETNEGLAVMNRLSKAA 373 >gi|238019082|ref|ZP_04599508.1| hypothetical protein VEIDISOL_00944 [Veillonella dispar ATCC 17748] gi|237864337|gb|EEP65627.1| hypothetical protein VEIDISOL_00944 [Veillonella dispar ATCC 17748] Length = 347 Score = 305 bits (783), Expect = 5e-81, Method: Composition-based stats. Identities = 102/340 (30%), Positives = 164/340 (48%), Gaps = 25/340 (7%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 QI++ L L G ++IPTETVYGL + +P A+ ++Y K RP+ NPLI Sbjct: 8 QIITNPSEQELDMLARALRNGELVSIPTETVYGLGANGLDPEAMDKIYAAKGRPSDNPLI 67 Query: 62 CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 HV + +K V + L FWPGPLT+ L + + +T L R P Sbjct: 68 LHVPNSESIKPLVTEVSNTAQLLMDTFWPGPLTITLP--KSDLVPNRATGGLPRVALRCP 125 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + L+E G P+A PSAN SG+ S T + + + I I+D G IG+EST Sbjct: 126 DHKICRALLERAGVPVAAPSANISGRPSPTTAQDVY-HDMKGRISYILDAGPCTIGVEST 184 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEY---CVDETSTPQSPGMLKSHYAPRSQV 236 +V V + KV ILRPGG+ L+ +S +EY V+ T+ P++PGM +HYAP + + Sbjct: 185 VVEVH-DDKVIILRPGGITKAQLENVVST-VEYDTALVNATTKPKAPGMKYTHYAPDAPM 242 Query: 237 RLRAIHVNPREALIRFGNVPIKNIENAIIS---LNLSKT------------GKLKEAAFN 281 + + + + + I+ ++S NL K G + Sbjct: 243 TVVVGNPEVIASTFKELSEGIEGPIGCLVSHETYNLIKDDMRFMCHCFGHHGDALSLGHD 302 Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 + + +++ + I + ++G G+AI NR+E+A++ Sbjct: 303 FYKSLLHFNENHVTLILAEGVNDNGFGVAIMNRMEKASSH 342 >gi|239637409|ref|ZP_04678391.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus warneri L37603] gi|239597009|gb|EEQ79524.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus warneri L37603] Length = 347 Score = 305 bits (783), Expect = 5e-81, Method: Composition-based stats. Identities = 92/329 (27%), Positives = 154/329 (46%), Gaps = 15/329 (4%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 I S + + + + G +A+PTETVYGL D+ N A+ +YE K RP+ NPLI H+ Sbjct: 14 DILQSTDVLEIKDTVLNGGLVALPTETVYGLGADATNQEAVSHIYEAKGRPSDNPLIVHI 73 Query: 65 SDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 D+S + ++P L + FWPGP++ +L L S + P T L + R+P Sbjct: 74 HDMSQMNDFVDTLEPKVQSLMEAFWPGPISFILPLKSGY-LCPKVTGGLNSIAVRMPSHP 132 Query: 124 T-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 + +++ P+A PSAN SG+ S T +H+ + I II+G S+ GLEST+++ Sbjct: 133 IGRSVLQHIDKPIAAPSANISGRPSPTTFEHVF-QDLNGRIDGIINGDQSEEGLESTVLD 191 Query: 183 VQCEKKVRILRPGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRLRA- 240 + RI RPG + + ++ + +E +E S P +PGM HY+P + V + Sbjct: 192 CT-QYPFRIARPGSITKKMIENVLPNCIEASNYNEASQPIAPGMKYKHYSPDTPVTILKE 250 Query: 241 ------IHVNPREALIRFGNVPIKNIENAIISLNLSKT-GKLKEAAFNLFNYMKIAD-DS 292 H ++ + + I + L +K+A L++ + D + Sbjct: 251 LNKKILDHNKWKQVAFVVPDSLSHFLPKEAIYIKLCDNVTDIKQANHLLYSILHEIDQRA 310 Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAAP 321 + AI NR+ +AA Sbjct: 311 DITHAYIYGFDESDQSEAIMNRMLKAAGN 339 >gi|298242303|ref|ZP_06966110.1| Sua5/YciO/YrdC/YwlC family protein [Ktedonobacter racemifer DSM 44963] gi|297555357|gb|EFH89221.1| Sua5/YciO/YrdC/YwlC family protein [Ktedonobacter racemifer DSM 44963] Length = 359 Score = 305 bits (782), Expect = 6e-81, Method: Composition-based stats. Identities = 104/353 (29%), Positives = 168/353 (47%), Gaps = 36/353 (10%) Query: 2 QIMSIT----DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 +I+ I + + L A L AG + PTETVYGL + P A+ +++ K+RP Sbjct: 7 EIIPINARQPEEHVLAHAVTLLRAGELVVFPTETVYGLGAAALQPAAVEKIFAAKERPYS 66 Query: 58 NPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 +PLI H++ + ++ + + + + FWPGPLTLVL + + L T+ L T Sbjct: 67 DPLIVHIASEADIEHLVRDISEQARQVMRHFWPGPLTLVLP--AHPRVPRLVTSGLDTVA 124 Query: 117 FRVPCGFTKK-LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R+P LI G P+A PSANR +S T +H+ + + +PLI+DGG S +G Sbjct: 125 IRMPSHPVALGLIRALGAPVAAPSANRFMHVSPTTAQHV-EADLKGRVPLILDGGASTVG 183 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLK---------RAISVELEYCVDETSTPQSPGML 226 +ESTI+++ E ILRPGG+ +E L+ RA S+ E +SPG + Sbjct: 184 VESTILDMSSELP-TILRPGGVSLEALRVLLPQVQPPRARSLANPDLAHEVEAQKSPGQM 242 Query: 227 KSHYAPRSQ----------------VRLRAIHVNPREALIRFGNVPIKNIENAIIS-LNL 269 HYAPR + L+ + + + + + +++ S L Sbjct: 243 LIHYAPRVPAFLFEGASMSMRHAMLLELQRLQRQGKTVGVLIADEDVAYFQSSGASMYVL 302 Query: 270 SKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 + A LF ++ +D+G I + P GLG+AI +RL +A + Sbjct: 303 GSEEDSTKVASRLFAGLRTLEDAGVDVILCRAFPETGLGLAIRDRLLKATGGK 355 >gi|108760186|ref|YP_629797.1| Sua5/YciO/YrdC/YwlC family protein [Myxococcus xanthus DK 1622] gi|108464066|gb|ABF89251.1| Sua5/YciO/YrdC/YwlC family protein [Myxococcus xanthus DK 1622] Length = 333 Score = 305 bits (782), Expect = 6e-81, Method: Composition-based stats. Identities = 110/327 (33%), Positives = 166/327 (50%), Gaps = 14/327 (4%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 + +L +A E L G +A+PTETVYGL+ ++ + A+RR++ IK RPA +PLI H+ Sbjct: 13 RMIAPESLERAVELLRHGGVVALPTETVYGLSANAEDELAVRRVFAIKGRPATHPLIVHI 72 Query: 65 SDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 + + A V + LA+ FWPGPLTLVL + T T RVP Sbjct: 73 PGVEHLNTWAREVPEAARKLAEAFWPGPLTLVLPRTARAT--DAVTGGQDTVALRVPNHP 130 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 +++ G LA PSANR G++S T +H+ + ++ L++DGG +G+ESTIV+ Sbjct: 131 VALAVLQKLGGGLAAPSANRFGKVSPTTAEHV-REDLGGDVDLVLDGGPCTVGVESTIVD 189 Query: 183 VQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL---- 238 + + ILRPGGL E ++R + ++ +S + G L+SHYAPR+ V L Sbjct: 190 LSSNEPA-ILRPGGLAAEDVERVLGRKVPVRT--SSKVRVSGSLESHYAPRAGVVLTEPV 246 Query: 239 --RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296 A R +R G + ++ + AA L+ ++ AD G Sbjct: 247 QAVARVQELRGQGLRVGVLGPASLALPPDVPRFDVPDEPAGAARVLYARLREADTQGHDV 306 Query: 297 IAFSSIPNHGLGIAINNRLERAAAPRN 323 + GLGIA+ +RL RAAAPR Sbjct: 307 LVACLPAESGLGIAVRDRLSRAAAPRG 333 >gi|259479736|tpe|CBF70230.1| TPA: translation initiation protein Sua5 (AFU_orthologue; AFUA_2G09160) [Aspergillus nidulans FGSC A4] Length = 427 Score = 305 bits (782), Expect = 7e-81, Method: Composition-based stats. Identities = 102/382 (26%), Positives = 161/382 (42%), Gaps = 74/382 (19%) Query: 11 ALRKACEFLDAGLP-IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 A+ +A L +A PTETVYGL D+ A++ +Y+ K+RP+ NPLI H+ + M Sbjct: 43 AIAEAANLLRTSDVPVAFPTETVYGLGADATRSDAVQGIYKAKQRPSDNPLIVHIDSLQM 102 Query: 70 VKKH---------------ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT 114 + + +++ P+ L + FWPGPLT++L S + + P T+NL T Sbjct: 103 LNRLLNPASDTSCPTKVVQSTIPPIYKALIERFWPGPLTILLPNPSGSRLAPEVTSNLTT 162 Query: 115 ACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173 R+P + LI PLA PSAN S + S T +H+ + I LI+DGG Sbjct: 163 FGVRMPLSPLARLLIHVADRPLAAPSANASTKPSPTAAEHVF-HDLQGRIELILDGGPCG 221 Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL------EYCVDETSTPQSPGMLK 227 +G+EST+V+ ILRPGG+ IE L+ E + D P++PGM Sbjct: 222 VGVESTVVDGLSN-PPSILRPGGVSIEELRTCPGWENVQLAYHDGTYDVKEIPRAPGMKY 280 Query: 228 SHYAPRSQVRLRAIHVNPREALIRFGN--------------------------VPIKNIE 261 HY+P+++V L + + +P ++IE Sbjct: 281 RHYSPKARVVLFEAGSKSQAIVDHVKRDLQDTAVGAHSIGLVRTRTWKRGLQLLPEEDIE 340 Query: 262 NAII----------------------SLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF 299 + +K+ A LF ++ D+ I Sbjct: 341 KMAKATASLVGSLVQFSIPVGGKTKEVFDCHLGTDVKDIARGLFAALRAMDEKQVDVIYV 400 Query: 300 SSIPNHG-LGIAINNRLERAAA 320 + + L A+ NRL +AA Sbjct: 401 EGVSDTEYLAAAVMNRLRKAAG 422 >gi|124515366|gb|EAY56876.1| SUA5/yciO/yrdC family [Leptospirillum rubarum] gi|206601667|gb|EDZ38150.1| SUA5/yciO/yrdC family [Leptospirillum sp. Group II '5-way CG'] Length = 339 Score = 305 bits (781), Expect = 7e-81, Method: Composition-based stats. Identities = 107/319 (33%), Positives = 157/319 (49%), Gaps = 15/319 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +R+A E L G + IPTETVYGL D+ NP A+RR++ IK RP +PLI H+ I ++ Sbjct: 6 IRQAVEHLKQGRTVVIPTETVYGLGADASNPEAVRRIFAIKGRPPGHPLIVHIEKIDCLE 65 Query: 72 KHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-KLIE 129 A + P+++ LA+ FWPGPLTLVL ++ P T +T RVP L+ Sbjct: 66 SWAKTIPPVAVRLAERFWPGPLTLVLPRR--REVLPEVTGGQETVALRVPSHPVITALLR 123 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 +G +A PSANR G++S T+ + + +I++GG GLESTI+ Q V Sbjct: 124 AFGGGIAAPSANRFGRLSPTSARDVY-EEFKDAAGMILEGGPCSFGLESTILGFQDGHPV 182 Query: 190 RILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREAL 249 +LRPG L TL+ + V + +P+ PG SHY P + + L R +L Sbjct: 183 -LLRPGALSTGTLEEFLGVRILRSAAGADSPRVPGSSLSHYQPDTPLELLPGEDLVRRSL 241 Query: 250 I------RFGNVPIKNIENAIISLNLSKTGKLKEA---AFNLFNYMKIADDSGASSIAFS 300 + G + + E L+ +EA L+ + D +G I Sbjct: 242 SLSAQGRKVGILYRRAEEERFHGDGLTPVPMPREAEAYGQALYAVLHFFDRAGVDRILVE 301 Query: 301 SIPNHGLGIAINNRLERAA 319 P G A+N+RL RAA Sbjct: 302 FPPQTGEWEAVNDRLGRAA 320 >gi|110638807|ref|YP_679016.1| translation factor SUA5 [Cytophaga hutchinsonii ATCC 33406] gi|110281488|gb|ABG59674.1| translation factor SUA5 [Cytophaga hutchinsonii ATCC 33406] Length = 321 Score = 305 bits (781), Expect = 8e-81, Method: Composition-based stats. Identities = 119/318 (37%), Positives = 173/318 (54%), Gaps = 17/318 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 + +A L+ +AIPTETVYGLA ++ + A+ ++ +KKRP+ +PLI H I + Sbjct: 10 DITQAKRLLEENHVVAIPTETVYGLAGNALDIKAVATIFSVKKRPSFDPLIVHTHSIEAL 69 Query: 71 KKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + + P LAK FWPGPLTL+L+ I L T+ L R+P T L+ Sbjct: 70 GEFVADIPEQAQLLAKAFWPGPLTLLLEKKEI--IPDLVTSGLNRVAVRIPNHPLTLALL 127 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 ++ PLA PSAN G IS T +H+ + + ++ I+DGG S IG+ESTI+ + K Sbjct: 128 QSLSFPLAAPSANPFGYISPTTAQHV-TDQLGDQVAYILDGGASNIGVESTIIGWE-NGK 185 Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVR------LRAIH 242 ++R GGL IE ++ I + +S P +PGMLKSHYAPR +R L + Sbjct: 186 ATVMRVGGLSIEAIEAIIG-PVHVQAVSSSNPAAPGMLKSHYAPRIPMRAGNIETLLQTY 244 Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302 + A++ F +N I LS G + EAA +LF M++ D S A I + Sbjct: 245 AGKKIAVLSFQQAYPAAYKNYI----LSPEGNVTEAAQHLFAAMRVLDTSEADIILTEYV 300 Query: 303 PNHGLGIAINNRLERAAA 320 P GLG+AIN+RL+RA A Sbjct: 301 PAVGLGLAINDRLKRACA 318 >gi|189502130|ref|YP_001957847.1| hypothetical protein Aasi_0735 [Candidatus Amoebophilus asiaticus 5a2] gi|189497571|gb|ACE06118.1| hypothetical protein Aasi_0735 [Candidatus Amoebophilus asiaticus 5a2] Length = 325 Score = 305 bits (781), Expect = 8e-81, Method: Composition-based stats. Identities = 113/323 (34%), Positives = 175/323 (54%), Gaps = 14/323 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + A +FL G ++IPTETVYGLA ++ N A+ +++ IK+RP NPLI H+ DI Sbjct: 6 TDISLASKFLKQGEVVSIPTETVYGLAANAYNEAAVSKVFSIKQRPMSNPLIIHIGDIEQ 65 Query: 70 VKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + P ++ LA+ FWPGPLTL+L +T I + TA R+P T +L Sbjct: 66 INEFVKEIPSEAVILAQHFWPGPLTLLLPKKAT--IPDMVTAGSNKVAIRIPNHPVTLQL 123 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++T PLA PSAN G +S T +H+ + +IP I+ GG +G+ESTIV + K Sbjct: 124 LKTIPFPLAAPSANPFGYVSPTTTEHV-KEQLGDKIPYILMGGTCAVGIESTIVGFEDGK 182 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQ----SPGMLKSHYAPRSQVRL-RAIH 242 + + R GGLEI ++++ + + + S P +PG L HY+P ++L Sbjct: 183 TI-VYRLGGLEIASIEKLVGTVILHNNLTASNPIEKLVTPGSLSYHYSPNKLLKLGNMSD 241 Query: 243 VNPREALIRFGNVPIKNIENAI---ISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF 299 + + G + + + L+ TGK++EAA+NLF ++ D I Sbjct: 242 LLVTYGSQKVGILAFDQYYEGVNKGQQILLAPTGKVEEAAYNLFAALRELDQLDIDVILC 301 Query: 300 SSIPNHGLGIAINNRLERAAAPR 322 S +P+ GLG+AIN+RL RA+A R Sbjct: 302 SLVPHQGLGMAINDRLVRASASR 324 >gi|146423277|ref|XP_001487569.1| hypothetical protein PGUG_00946 [Meyerozyma guilliermondii ATCC 6260] Length = 403 Score = 304 bits (780), Expect = 9e-81, Method: Composition-based stats. Identities = 107/351 (30%), Positives = 168/351 (47%), Gaps = 36/351 (10%) Query: 1 MQIMSITDSNALRKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 ++I L A + L I PTETVYGL + + +++ +Y+ K RPA NP Sbjct: 50 LEISDPVTKKNLETAAKVLTTTHDVIGFPTETVYGLGGSALSDESVKSIYKAKNRPADNP 109 Query: 60 LICHVSDISMVKK-----HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT 114 LI HVS IS +K+ + + + L FWPGPLT++L + ++ I TA T Sbjct: 110 LIVHVSSISQLKRKILPPNYQIPKVYESLIHKFWPGPLTILLPVHESSPILKFVTAGQST 169 Query: 115 ACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173 R+P + LI PLA PSAN S + S T H+ + + IP I+DGG Sbjct: 170 FAVRIPQHPVARALIALSDTPLAAPSANASTRPSPTIASHVYND-LQGRIPYILDGGSCD 228 Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS------VELEYCVDETSTPQSPGMLK 227 G+E T+V+ + + +LRPGG+ +E +K V + +T ++PGM Sbjct: 229 FGVELTVVDGLVDPPM-LLRPGGVSLEEIKLVGGEPWKDVVVAKKTAGKTEAVRTPGMKY 287 Query: 228 SHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAIISL-------NLSKTGKLKE--- 277 HY+P ++V L + +EA+ + + N+++ I+L +S T KE Sbjct: 288 RHYSPTARVVLFVNCGDGKEAIDNY--ISSHNLQDCKIALLKSRHFVGISSTSANKESID 345 Query: 278 ---------AAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 + NLF Y++ D++G I I G+A+ NRL +AA Sbjct: 346 RELGTDGHTISHNLFRYLREVDETGVDMIFVEGIEETNEGLAVMNRLSKAA 396 >gi|89056386|ref|YP_511837.1| translation factor SUA5 [Jannaschia sp. CCS1] gi|88865935|gb|ABD56812.1| translation factor SUA5 [Jannaschia sp. CCS1] Length = 314 Score = 304 bits (780), Expect = 9e-81, Method: Composition-based stats. Identities = 121/318 (38%), Positives = 171/318 (53%), Gaps = 20/318 (6%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 D + +A E L G +A+PTETVYGLA D+RN A+ R++ K RP NPLI HV Sbjct: 11 NDVAGIARAAEVLRDGGLLALPTETVYGLAADARNGAAVARIFAAKGRPTFNPLIVHVVS 70 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + ++ V+ + LAK FWPGP+TLVL S + L + L T RVP + Sbjct: 71 LETAEELVEVNAQAHALAKAFWPGPMTLVLP--SKGRVADLISGGLDTLAVRVPAHPLAR 128 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 ++ +G P+A PSAN SGQIS T H++ + + + ++DGG +GLESTI+ Sbjct: 129 AVLGAFGGPVAAPSANPSGQISPTMAAHVV-AGLGSAVEAVLDGGACGVGLESTIL-APS 186 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245 E VR+LR GG+ E ++ + + ++PG ++ HYAPR+QV L ++ P Sbjct: 187 EGGVRLLREGGVSREAVEAVVGPVVADLTPG--RIEAPGQMERHYAPRTQVVLGSVAT-P 243 Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDS----GASSIAFSS 301 + +I FG V LS+ G L EAA LF + AD GA I + Sbjct: 244 GDVMIGFGAVGGD--------FTLSERGDLVEAAERLFATLHAADTLALTRGAQVIRVAE 295 Query: 302 IPNHGLGIAINNRLERAA 319 +P GLG AIN+RL RAA Sbjct: 296 VPEVGLGRAINDRLRRAA 313 >gi|150020136|ref|YP_001305490.1| Sua5/YciO/YrdC/YwlC family protein [Thermosipho melanesiensis BI429] gi|149792657|gb|ABR30105.1| Sua5/YciO/YrdC/YwlC family protein [Thermosipho melanesiensis BI429] Length = 335 Score = 304 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 88/330 (26%), Positives = 150/330 (45%), Gaps = 17/330 (5%) Query: 2 QIMSITDSNALRKA--CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 +I+ I + + + C+ + +G +A PTETVYGL + N A+ +++++K R NP Sbjct: 4 KILKIKTLSDIDISYPCKVIKSGGLVAFPTETVYGLGASASNGEAVDKIFKVKGRAKDNP 63 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 LI HV+ + + + V+ + + PGP+T V+ ++ TA+L T R+ Sbjct: 64 LIVHVAFVDTLYEIGEVNEKYRKVIEQITPGPITFVIRKKAS--FPKNVTASLNTVGVRI 121 Query: 120 PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 P + + Y P+A PSAN SG+ S T+ ++ + +I IID G + G+EST Sbjct: 122 PAHPVARKLCEYAGPIAAPSANLSGKPSPTDASAVI-EDLFGKIECIIDAGNTPFGIEST 180 Query: 180 IVNVQCEKKVRILRPGGLEIETLK----RAISVELEYCVDETSTPQSPGMLKSHYAPRSQ 235 I+++ + + ILRPG + IE L I + TP++PGM HYAP Sbjct: 181 IIDLSGDIPI-ILRPGPITIEKLHELFGEVIIPDFVKNAKTVETPKAPGMKYRHYAPEKP 239 Query: 236 VRLRAIHVNPREALIRFGNVPI-------KNIENAIISLNLSKTGKLKEAAFNLFNYMKI 288 V + + I + K + + L A NLF ++ Sbjct: 240 VYIFERKNRKKIIEIAHKEKGVILCPKEHKRFYPGDMVVVLGSLENPYTIAQNLFRLLRQ 299 Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERA 318 D + G+ ++ NRL++A Sbjct: 300 IDKMDFQIAYVEKLEERGILFSVMNRLKKA 329 >gi|296116654|ref|ZP_06835264.1| hypothetical protein GXY_12643 [Gluconacetobacter hansenii ATCC 23769] gi|295976866|gb|EFG83634.1| hypothetical protein GXY_12643 [Gluconacetobacter hansenii ATCC 23769] Length = 335 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 127/327 (38%), Positives = 174/327 (53%), Gaps = 11/327 (3%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M + D + +A + L G +A TETVYGL D+ N A+ R++ K+RP NPL Sbjct: 13 MTQRLVADRAGITRAADILRTGGLVAFGTETVYGLGADATNAVAVARIFAAKERPTFNPL 72 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 I H D + HA D + LA FWPGPLT+VL + I L+ A L + RVP Sbjct: 73 ISHFPDAAAAFVHAMADGRAHRLAHRFWPGPLTMVLPRAAGCAISDLAGAGLPSVAVRVP 132 Query: 121 C-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + L+ G P+A PSAN SG +S + +H+L + +I I+D G +G+EST Sbjct: 133 DSDTARALLAAAGVPVAAPSANPSGGVSPSRAEHVL-DGLEGKIDAILDSGPCAVGVEST 191 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 IV++ V +LRPGG+ IE L+ + P +PG L SHYAP VRL Sbjct: 192 IVDLTGTHPV-LLRPGGITIEALREVCPDITTPHDTSDARPVAPGRLSSHYAPTLPVRLD 250 Query: 240 AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD----DSGAS 295 A V P EAL+ FG + + ++ NLS+ KL+EAA LF ++ D G Sbjct: 251 AQTVAPDEALLAFG----AELPGSPLTWNLSQGEKLEEAAARLFAGLRFLDMEGRRRGLR 306 Query: 296 SIAFSSIPNHGLGIAINNRLERAAAPR 322 +IA +P HGLG AI +RL RAA PR Sbjct: 307 AIAVQPVPTHGLGAAIGDRLSRAACPR 333 >gi|168700740|ref|ZP_02733017.1| translation factor SUA5 [Gemmata obscuriglobus UQM 2246] Length = 331 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 102/324 (31%), Positives = 159/324 (49%), Gaps = 19/324 (5%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 +S+ + +A + +G +A PTETVYGL + + A+ ++E K RP+ NPLI HVSD Sbjct: 14 ESDVIGRAAAVVRSGGLVAFPTETVYGLGANGLSAAAVAGIFEAKGRPSTNPLILHVSDA 73 Query: 68 SMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 S V A+ P + LA FWPGPLTLV+ + + + TA T R P + Sbjct: 74 SEVLNVAAAWPATAQTLAARFWPGPLTLVVPKRDS--VPNIVTAGGPTVAVRCPNHAVAR 131 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LI G PLA PSANRS ++S T +H+L + I +++DGG GLEST+V+V Sbjct: 132 ALIRAAGVPLAAPSANRSTELSPTRAEHVLK-GLNGRIAIVLDGGPCSGGLESTVVDVTG 190 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245 E R+LRPG + + L+ +E ++PG + HY+PR+ + L Sbjct: 191 EIP-RVLRPGLITVPMLEAVCG-RVEVGTKSEGVARAPGQMVKHYSPRTPLVLVDRADEA 248 Query: 246 REALIRFGNVPIKNIENAIISLNLSKTG---------KLKEAAFNLFNYMKIADDSGASS 296 A + ++ + ++ +L T + + A +L+ + D+ Sbjct: 249 ERARAAASRLGLRAV---VVGFDLPLTAASMYRAMMFEPDQYAADLYAVLHELDNGRYDQ 305 Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320 I P+ A+ +RL RAAA Sbjct: 306 IVVEMPPDTPEWAAVRDRLTRAAA 329 >gi|167388661|ref|XP_001738645.1| sua5 [Entamoeba dispar SAW760] gi|165898009|gb|EDR25013.1| sua5, putative [Entamoeba dispar SAW760] Length = 357 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 103/328 (31%), Positives = 150/328 (45%), Gaps = 21/328 (6%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 DS + A + + G + PTETVYGL D P AI +++++K RP NPLICH+SDI Sbjct: 28 DSKLITPAAKIIQQGGLVCFPTETVYGLGADVFQPNAINQIFKVKGRPNDNPLICHISDI 87 Query: 68 SMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 M+ K A V + L K FWPG LT++ T + TA L T R+P Sbjct: 88 EMLNKLAAHVSEDAHKLIKRFWPGALTIIFPRNET--VPNEVTAGLNTVGVRMPSHPIAY 145 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 + I+ P+A PSAN S + S T +H + + I +IIDGG IG+EST++ + Sbjct: 146 EFIKQCKTPIAAPSANLSTKPSPTIGRHCI-DDLNGRIEMIIDGGACDIGVESTVL-LLG 203 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDET----STPQSPGMLKSHYAPRSQVRLRAI 241 + ILRPGG+ +E L+ I Y + + P +PGM HYAP + Sbjct: 204 NEHPTILRPGGVTLEMLREVIPSTQVYKMSTNLSLEAKPPTPGMKYRHYAPSVDTIVITG 263 Query: 242 HVNPREALIRFGNVPIKNIENAIISLNLSK---------TGK-LKEAAFNLFNYMKIADD 291 + + ++ +L TG K A LF M+ D Sbjct: 264 DKRSEKLIELCHEYMKSGKRVGVVCWSLESLNCTLFMKVTGDRYKGMAHALFTDMRDLD- 322 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAA 319 I + G+A+ NR ++AA Sbjct: 323 GKVDIILIEGVQEIKEGLAVMNRAKKAA 350 >gi|302383673|ref|YP_003819496.1| Sua5/YciO/YrdC/YwlC family protein [Brevundimonas subvibrioides ATCC 15264] gi|302194301|gb|ADL01873.1| Sua5/YciO/YrdC/YwlC family protein [Brevundimonas subvibrioides ATCC 15264] Length = 325 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 113/313 (36%), Positives = 161/313 (51%), Gaps = 13/313 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S L A L AG + +PTETVYGLA D+ A+ R++E K RP NPLI HV+D Sbjct: 22 SEGLDAAVAALRAGDLVILPTETVYGLAADAGRAEAVARIFEAKGRPRFNPLIAHVADTG 81 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + A D + LA FWPGPLT+V + + L+ A L + RVP + L Sbjct: 82 AAEAIAVFDDAARALAAAFWPGPLTIVAPVRPGDRVCDLARAGLDSVAVRVPGHPVARAL 141 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ +G P+ PSANRSG+ S T + + +DGG +G+EST+V+V + Sbjct: 142 LQAFGGPVVAPSANRSGRPSPTTFADAMEET-GSSAAAALDGGPCDVGVESTVVSVL-DG 199 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 +V +LRPG + + ++ + + +SPG L HYAP + VR+ A E Sbjct: 200 RVTLLRPGAVTRDQIEALVG----PLAESDHGHRSPGRLTLHYAPDAPVRIDAETAGEGE 255 Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307 L+ FG + NLS +G +EAA LF ++ AD IA + +P GL Sbjct: 256 ILLGFGP------GSGDPRWNLSPSGDPREAAAKLFRLLREADREHPVGIAVAPVPMAGL 309 Query: 308 GIAINNRLERAAA 320 G AIN+RL RAA Sbjct: 310 GEAINDRLRRAAG 322 >gi|149185276|ref|ZP_01863593.1| putative translation factor [Erythrobacter sp. SD-21] gi|148831387|gb|EDL49821.1| putative translation factor [Erythrobacter sp. SD-21] Length = 312 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 121/315 (38%), Positives = 171/315 (54%), Gaps = 18/315 (5%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + +A E L AG +A+PTETVYGLA + + A+ +YE K RP+ NPLI HV+ + Sbjct: 13 DKGGMARAAEILRAGGLVAVPTETVYGLAARADDMAAVSLIYEAKGRPSFNPLIVHVASM 72 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + + A P + LA+ WPGPLTLVL + + TA L+T R+P +K Sbjct: 73 KVARNLAEFSPEAEALAEAHWPGPLTLVLPSRTDAKLADTVTAGLETVAVRMPNHPIMRK 132 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 ++++ PLA PSANRSG IS T +H+L+S + I ++DGG + G+ESTI V+ + Sbjct: 133 ILQSVDVPLAAPSANRSGFISPTTAEHVLTS-LDGRIDAVLDGGECRAGVESTIAAVRAD 191 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246 +V +LRPG ++++ A D ++PG L SHYAP VRL I Sbjct: 192 GRVEVLRPGPVQLDAGAMA--------QDGVGKIEAPGQLASHYAPGKPVRLDVIRSVED 243 Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306 E I FG V +LS G L+EAA L+ + S IA + IP G Sbjct: 244 EFYIGFGKVTGD--------CSLSVGGDLEEAASRLYACLHEGAASHKPRIAIAPIPAEG 295 Query: 307 LGIAINNRLERAAAP 321 +G AIN+R+ RAA P Sbjct: 296 IGRAINDRIRRAATP 310 >gi|296122108|ref|YP_003629886.1| Sua5/YciO/YrdC/YwlC family protein [Planctomyces limnophilus DSM 3776] gi|296014448|gb|ADG67687.1| Sua5/YciO/YrdC/YwlC family protein [Planctomyces limnophilus DSM 3776] Length = 322 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 121/327 (37%), Positives = 177/327 (54%), Gaps = 17/327 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 MQ + ++D+ +A L AG +A+PTETVYGLA NP + +++ K RP +PL Sbjct: 1 MQTVVLSDA---EEAIRALKAGELVALPTETVYGLAGLGLNPEVLAKIFSAKDRPTFDPL 57 Query: 61 ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I H++ V + A V + L FWPGPLTLVL + L+TA L T R Sbjct: 58 ILHIARPGQVSQLASEVPHDARRLVDTFWPGPLTLVLPKKPH--VPDLATAGLGTVAVRC 115 Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P +K+IE G PLA PSAN G++S T+ +H++ + IP ++DGG ++G+ES Sbjct: 116 PKHPLMRKIIEKVGVPLAAPSANLFGRLSPTSAQHVV-EQLEGRIPYVLDGGACEVGVES 174 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEY---CVDETSTPQSPGMLKSHYAPRSQ 235 TI+ + V +LRPGGL +E ++ I V+ ++ +PGML HYAP + Sbjct: 175 TIIGFMPDG-VYLLRPGGLPVEQVEHMIGPLKRLPAQSVETAASQAAPGMLMKHYAPATP 233 Query: 236 VRL--RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293 + + R + P + ++ F P ++ + LS L+EAA LF + D SG Sbjct: 234 LVMIDRFEELKPGDGVLTFCGRPQGHL---GPVMELSPRKNLQEAASLLFQALHQLDRSG 290 Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAA 320 IA P HGLG+AIN+RL RAAA Sbjct: 291 VPRIAALRFPEHGLGMAINDRLSRAAA 317 >gi|261252205|ref|ZP_05944778.1| YrdC family protein [Vibrio orientalis CIP 102891] gi|260935596|gb|EEX91585.1| YrdC family protein [Vibrio orientalis CIP 102891] Length = 319 Score = 303 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 93/318 (29%), Positives = 161/318 (50%), Gaps = 7/318 (2%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 Q +S ++S + +A E L +G +AIPTETVYGLA D+ NP A+++++ K RPA +PLI Sbjct: 4 QHLSASNSKDIEQAKEILASGELVAIPTETVYGLAADASNPEAVKKIFAAKGRPANHPLI 63 Query: 62 CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 H+ + + A + + +A +WPGP+TL+L+ P+ T L+T R+P Sbjct: 64 VHIGSVEQLTDWATDIPQEAYTIASAYWPGPVTLLLNKAEQAT--PVVTGGLETIGVRMP 121 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 + + G +A PSAN ++S T+ +H+++S + +I ++DGG GLESTI Sbjct: 122 AHDVFASLLSSGMAVAAPSANPYKKLSPTSAQHVMNS-LGGKIAAVLDGGDCVHGLESTI 180 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 +++ ++ R+LR G + L + E+ + PG + SHY P ++VRL Sbjct: 181 IDLT-QRPFRVLRTGPVTATQLSETLGKEV--LAPKAHAVAVPGNVTSHYQPNTKVRLVD 237 Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300 + + IE ++ + + + + +L+ + AD G I Sbjct: 238 LSDIQSANGNNIACLHYSAIEASLGFKSKLMPQDVAQYSHDLYRALDEADKWGCDEIWVE 297 Query: 301 SIPNHGLGIAINNRLERA 318 P A+++RL RA Sbjct: 298 RPPVSEAWFAVHDRLNRA 315 >gi|323490905|ref|ZP_08096100.1| hypothetical protein GPDM_16096 [Planococcus donghaensis MPA1U2] gi|323395385|gb|EGA88236.1| hypothetical protein GPDM_16096 [Planococcus donghaensis MPA1U2] Length = 330 Score = 303 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 109/332 (32%), Positives = 161/332 (48%), Gaps = 23/332 (6%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 ++ + N+ +A E L +G +A PTETVYGL D+ N A+ +++E K RPA NPLI HV Sbjct: 11 NVDEENSYAQAVENLKSGEVVAFPTETVYGLGADATNFEAVSKIFEAKGRPADNPLIVHV 70 Query: 65 SDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 + V +L FWPG LTL++ T TANL+T RVP Sbjct: 71 DKKESALNYVQEVSAKALQCMDAFWPGALTLIMQAKPET-FANNVTANLQTVGIRVPNHP 129 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 KL++ PLA PSAN SG+ S T H+ + IPLI+DGG ++IG+EST+++ Sbjct: 130 VALKLLQEVKLPLAAPSANTSGKPSPTLASHV-RHDMDGRIPLILDGGATEIGIESTVLD 188 Query: 183 VQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242 CE V ILRPG + E +++ I ++ + P+SPGM HYAP + + L Sbjct: 189 TTCEPPV-ILRPGKITKEQIEQVIGTVRTSSGNKDNVPKSPGMKYMHYAPTAPLYLIEDE 247 Query: 243 --------VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGA 294 +E R + + A + LS L+ ++ D + A Sbjct: 248 KSLIEKAIQYVQEKGKRVAVISETDYPLADFNFPLSMES--------LYASLRECDLTDA 299 Query: 295 SSIAFSSIPNHGLGI-AINNRLERAAAPRNQS 325 I + + A+ NRLE+AA + S Sbjct: 300 DLILA-PVKSSDQDQDALMNRLEKAADHKWFS 330 >gi|13542129|ref|NP_111817.1| translation factor (SUA5-related) [Thermoplasma volcanium GSS1] gi|14325560|dbj|BAB60463.1| hypothetical protein [Thermoplasma volcanium GSS1] Length = 361 Score = 303 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 103/323 (31%), Positives = 159/323 (49%), Gaps = 17/323 (5%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + L A E L G + PTETVYGL ++ N A ++++ K RP+ NPLI H+SD+ Sbjct: 14 KDDLYYAVEALKHGGTVVFPTETVYGLGANAMNDEACKKIFIAKGRPSDNPLIVHISDMD 73 Query: 69 MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 ++ + V + K WPGPLT+V++ I TA L T R+P + Sbjct: 74 QLENFSKNVKEEYKAILKELWPGPLTVVVE--KANGIPDTVTAKLPTVAIRMPDDSIARN 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LI+ G P+A PSAN S + SIT+ K + + + +IID G K G+ESTI+++ + Sbjct: 132 LIDMAG-PIAAPSANISTKPSITDSKDAIR-FLDGRVDVIIDAGKVKFGIESTIIDLTQD 189 Query: 187 KKVRILRPGGLEIETLKRAISV----ELEYCVDETSTPQSPGMLKSHYAPRSQVRL---R 239 VR+LRPG +E L+ ++ E +PGM HY+P ++ L R Sbjct: 190 -PVRLLRPGAFSVEDLEPLFGKITVDKVALGKAEAKVAITPGMKYRHYSPNKKIFLCKDR 248 Query: 240 AIHVNPREALIRFGNVPIKNIENAIISLN---LSKTGKLKEAAFNLFNYMKIADDSGASS 296 + + +E L G + + IS N + + L A NLF+ DDS + Sbjct: 249 EVVESLKEELPNNGVLMCTEEVSQGISTNKIIVGRDSDLYSVAHNLFSSFIELDDSSYNY 308 Query: 297 IAFSSIPNHGLGIAINNRLERAA 319 G+G+AI NR+ +A+ Sbjct: 309 GVIIPFEEKGIGLAIMNRIRKAS 331 >gi|163786575|ref|ZP_02181023.1| translation factor, SUA5-family protein [Flavobacteriales bacterium ALC-1] gi|159878435|gb|EDP72491.1| translation factor, SUA5-family protein [Flavobacteriales bacterium ALC-1] Length = 318 Score = 303 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 114/327 (34%), Positives = 175/327 (53%), Gaps = 20/327 (6%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I+S + KA + L A +AIPTETVYGLA + + AI+ ++E K+RP NPL Sbjct: 1 MSIVS----KDISKAVDLLTAEELVAIPTETVYGLAGNIYSEKAIKSIFETKQRPFFNPL 56 Query: 61 ICHVSDISMVKK-HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I H+ + ++K A + LA+ FWPGP+TLVL T I + TA T RV Sbjct: 57 IVHIPSLDYLEKIVAYIPEKGKLLAEAFWPGPITLVL--KKKTIIPDIITAGKDTVAVRV 114 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T +L+ PLA PSAN IS T +H+ + +I +++DGG K G+ES Sbjct: 115 PNHPLTLELLNQLDFPLAAPSANPFSSISPTTAEHV-ETYFMDKIKMVLDGGACKSGIES 173 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238 TI+ + ++ + I R G IE ++ + ++E + +P +PGML+ HYAP+++ L Sbjct: 174 TIIGFEDDEPI-IYRLGSTPIEAIENVVG-KIEVKNKKEISPDAPGMLERHYAPKTKTIL 231 Query: 239 -------RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291 H N R ++ F ++ ++ I LS+ L+EAA L++ + D Sbjct: 232 TRNLSKSIEKHRNKRIGVLMFNDILNDDVIQFKIV--LSEGKNLEEAASKLYDALHQLDK 289 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERA 318 I +P++GLG +IN+RLERA Sbjct: 290 QDLDIIIAEQLPDYGLGKSINDRLERA 316 >gi|27377681|ref|NP_769210.1| hypothetical protein bll2570 [Bradyrhizobium japonicum USDA 110] gi|27350826|dbj|BAC47835.1| bll2570 [Bradyrhizobium japonicum USDA 110] Length = 329 Score = 303 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 131/301 (43%), Positives = 169/301 (56%), Gaps = 8/301 (2%) Query: 24 PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHL 83 +A TETVYGL D+ N TAI LY K RPA NPLI HV+DI+ + D +L L Sbjct: 29 LVAFATETVYGLGADAANATAIAHLYAAKGRPAFNPLIAHVADITAAQAIGRFDARALKL 88 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142 A+ FWPGPLTLV+ + L+TA L T R+P + ++ +G + PSAN Sbjct: 89 AEAFWPGPLTLVVPKTDGCPVADLATAGLDTVAIRIPAHPVAQAILRAFGGAVVAPSANI 148 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202 SG +S T H+ S + I LI+DGG +G+ESTIV +LRPGGL E + Sbjct: 149 SGHVSPTLAAHV-ESDLSGRIDLIVDGGPVAVGVESTIVGCLNA--PMLLRPGGLSRERI 205 Query: 203 KRAISVELEYCVDET----STPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIK 258 + + L E S P +PGML SHYAPR+ VRL A V P EAL+ FG + Sbjct: 206 EAVLGAALARPPAEAGSDDSQPLAPGMLASHYAPRANVRLNAREVAPGEALLAFGPSRLP 265 Query: 259 NIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERA 318 ++ A +NLS T L EAA NLF Y++ D G +IA +IP LG AIN+RL RA Sbjct: 266 GLDAAAAVMNLSPTADLDEAAANLFGYLRALDAKGPRAIAVMTIPEDDLGEAINDRLRRA 325 Query: 319 A 319 A Sbjct: 326 A 326 >gi|82701740|ref|YP_411306.1| Sua5/YciO/YrdC/YwlC [Nitrosospira multiformis ATCC 25196] gi|82409805|gb|ABB73914.1| translation factor SUA5 [Nitrosospira multiformis ATCC 25196] Length = 364 Score = 303 bits (777), Expect = 3e-80, Method: Composition-based stats. Identities = 102/330 (30%), Positives = 155/330 (46%), Gaps = 24/330 (7%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + + A L G +A PTETVYGL + +P+A+ R++EIKKRP +PLI H +D S Sbjct: 7 SEIDAAAALLKKGGVVAFPTETVYGLGAEVSSPSAVARIFEIKKRPLDHPLIVHFADASR 66 Query: 70 VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + A V + LA+ FWPGPLTL+L + + T T RVP L Sbjct: 67 LSHWAREVPQQAWRLAECFWPGPLTLILPR--SRHVPEKVTGGQDTVGLRVPDHPVALAL 124 Query: 128 IETYG--HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 + G LA PSANR G +S T H+ E+ +++DGG ++GLESTIV + Sbjct: 125 LRELGPDRALAAPSANRFGHVSPTTAAHV-REEFGDELDMVLDGGPCQVGLESTIVGFEG 183 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245 + ILRPGG+++ L + + + + + PG L SHYAP + + L Sbjct: 184 -QTAVILRPGGIQLAALAEVLDGNVMLSQEAERSVRVPGALPSHYAPSTPLELLPADPLW 242 Query: 246 REAL---------------IRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD 290 AL R ++P + EN + + + +E A L+ ++ D Sbjct: 243 ARALELEAKGMRVAVMGWRRREHSLPRHHPENEPVVFSAMPE-EPEEYARQLYATLRRFD 301 Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + P +AI +RL RA++ Sbjct: 302 RGHFDRLLVEKPPETAAWVAIADRLRRASS 331 >gi|313677607|ref|YP_004055603.1| translation factor sua5 [Marivirga tractuosa DSM 4126] gi|312944305|gb|ADR23495.1| translation factor SUA5 [Marivirga tractuosa DSM 4126] Length = 317 Score = 303 bits (777), Expect = 3e-80, Method: Composition-based stats. Identities = 115/314 (36%), Positives = 181/314 (57%), Gaps = 9/314 (2%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + + +A E LDA I +PTETVYGLA + + +++E+K RP +PLI H ++ Sbjct: 6 SDINQAKELLDADQLIGLPTETVYGLAGNGLKANVVSKIFEVKNRPHFDPLILHSYSLNA 65 Query: 70 VKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127 + ++ P + LAK FWPGPLT++L+ I L+ + L FR+P L Sbjct: 66 ISEYVKEIPETAKILAKAFWPGPLTILLER--NEKIPDLTCSGLNRVAFRIPKHPNALSL 123 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ +PLA PSAN G IS TN +H+ + +IP I++G IS++G+ESTIV + + Sbjct: 124 LKILDYPLAAPSANPFGYISPTNSQHV-QQQLGDKIPFILEGKISEVGIESTIVGFENGE 182 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL-RAIHVNPR 246 V I R GGL+++ ++ I ++ +S P +PGMLKSHYAP + L + + Sbjct: 183 TV-IYRLGGLDVDQIESLIG-KVRILPHSSSKPDAPGMLKSHYAPSKNIILGNIEELIEQ 240 Query: 247 EALIRFGNVPI-KNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305 + ++ G + K ++ SL LSK+ + EAA NLF++++ D+S I +P+ Sbjct: 241 NSNLKLGVLSFSKYYKDVETSLMLSKSKDMHEAAKNLFSHLRKLDESNVDLIITEKVPSE 300 Query: 306 GLGIAINNRLERAA 319 GLG AIN+RL+RAA Sbjct: 301 GLGKAINDRLQRAA 314 >gi|167629001|ref|YP_001679500.1| sua5/ycio/yrdc/ywlc family protein [Heliobacterium modesticaldum Ice1] gi|167591741|gb|ABZ83489.1| sua5/ycio/yrdc/ywlc family protein [Heliobacterium modesticaldum Ice1] Length = 422 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 113/404 (27%), Positives = 160/404 (39%), Gaps = 93/404 (23%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + LR+A L AG +A PTETVYGL D+ A+ ++ K RP+ NPLI H++D Sbjct: 20 AEGLREAAACLQAGGLVAFPTETVYGLGADALQAEAVAAIFTAKGRPSDNPLIVHIADRD 79 Query: 69 MVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 V + L+ LA+ FWPGPLTLVL ++ I + TA L T R+P + Sbjct: 80 DVARLTVGFPALARRLAERFWPGPLTLVLP--ASPQIPAVVTAGLATVAVRMPSHPVARA 137 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LI G P+A PSANRSG+ S T H+ + I I+DGG +GLEST+V+ + Sbjct: 138 LIGEAGTPVAAPSANRSGRPSPTTAAHVW-EDLGGRIDGIVDGGDCDLGLESTVVDATGD 196 Query: 187 KKVRILRPGGLEIETLK--------------------------------------RAISV 208 V ILRPGG+ E ++ Sbjct: 197 VAV-ILRPGGVTREMIEALGLPVRTAFAAERLGEGTGAVAGTDAVAGTDAVAGTDAVAGT 255 Query: 209 ELEYCVDETS------------------TPQSPGMLKSHYAPRSQVRLRAIHVNPREALI 250 + +E + P SPGM HYAPR+ + L + + Sbjct: 256 DAVAGTNEAAEAFCCDGDVEPGGGAGDFVPPSPGMKYVHYAPRAPLYLLDGGWEGQVEAL 315 Query: 251 RFGNVPIKNIENAIISLNL-------------------------------SKTGKLKEAA 279 R P + L L A Sbjct: 316 RRLLSPSAERGDDAGPTGLLISEDTYRRIEPMLQQCGDAGHGEKWVVRLTGSREDLATVA 375 Query: 280 FNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRN 323 LF ++ D + + I + P+ G+G A+ NRLE+AA R Sbjct: 376 RRLFGAIRAFDQTTVARIVAETYPHRGIGSALMNRLEKAAGGRR 419 >gi|88802068|ref|ZP_01117596.1| hypothetical protein PI23P_05377 [Polaribacter irgensii 23-P] gi|88782726|gb|EAR13903.1| hypothetical protein PI23P_05377 [Polaribacter irgensii 23-P] Length = 318 Score = 302 bits (775), Expect = 4e-80, Method: Composition-based stats. Identities = 117/321 (36%), Positives = 163/321 (50%), Gaps = 12/321 (3%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 MSI ++ + KA + L +AIPTETVYGLA + + AI R++ KKRP NPLI H Sbjct: 1 MSIISTD-IEKAVQLLTDAQLVAIPTETVYGLAGNIYSEKAIHRIFSTKKRPFFNPLIVH 59 Query: 64 VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 + I+ ++ + + LA FWPG LTLVL I L TA T RVP Sbjct: 60 IPSIASLESIVTHIPEKAKLLAAAFWPGSLTLVL--KKNRSIPDLITAGKDTVAVRVPNH 117 Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 T L++ PLA PSAN G IS T H+ + +I +I+DGG G+ESTI+ Sbjct: 118 PVTLALLQQLPFPLAAPSANPFGSISPTKAAHV-EAYFKNDIQMILDGGSCANGIESTII 176 Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL--R 239 + + + I R G L +E ++ + ++ E P++PGML HYAP + L Sbjct: 177 GFENDTPI-IYRLGALALEDIEAVVG-KITIKNKEEEHPEAPGMLARHYAPNTNTFLVND 234 Query: 240 AIHVNPREALIRFGNVPIKNIENA--IISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297 + + G + K NA I + LSKTG ++EAA NL+ M D I Sbjct: 235 VAAEIQKYTNKKIGVLVFKTSLNAPNISEIILSKTGSMQEAAANLYAAMHALDAQELDLI 294 Query: 298 AFSSIPNHGLGIAINNRLERA 318 P GLG +IN+RL+RA Sbjct: 295 IAEKFPEVGLGKSINDRLQRA 315 >gi|193215580|ref|YP_001996779.1| Sua5/YciO/YrdC/YwlC family protein [Chloroherpeton thalassium ATCC 35110] gi|193089057|gb|ACF14332.1| Sua5/YciO/YrdC/YwlC family protein [Chloroherpeton thalassium ATCC 35110] Length = 315 Score = 302 bits (775), Expect = 4e-80, Method: Composition-based stats. Identities = 99/313 (31%), Positives = 157/313 (50%), Gaps = 15/313 (4%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 ++A FL +A PTETVYGL + + A+ +++ +K RPA NPLI H+S+++ + Sbjct: 10 KEAARFLLKDELVAFPTETVYGLGANIFSEEAVHKIFRVKGRPAQNPLIAHISNLTELIL 69 Query: 73 HAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 V + L F+PGPLTLVL + + + T+ L T R+P + ++ Sbjct: 70 LVKRVTASAEKLIDAFFPGPLTLVLP--KSKYVPYVVTSGLDTIGVRMPSHQVAQAFLKA 127 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G +A PSAN SG+ S T +++ + + I I+ GG S++GLESTIV+ + V Sbjct: 128 CGVSVAAPSANLSGRPSPTTWQNV-EADLDGLISCILKGGRSEVGLESTIVDCTGKAPV- 185 Query: 191 ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR----AIHVNPR 246 +LR G + +E L+ + + + PG HYAP ++V L IH P Sbjct: 186 LLRAGAITLEQLQEITPAIKLAEISDDEPARCPGTKYKHYAPDAKVVLIDAPSEIHPEPS 245 Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306 A I I+ E + SL ++E A LF++ + D +I + G Sbjct: 246 SAYIG-----IEQPEASADSLITCSCVSIEEYAHQLFHFFRECDKKQVRTIFCQRVAKTG 300 Query: 307 LGIAINNRLERAA 319 LG+A+ +RL RAA Sbjct: 301 LGLALMDRLTRAA 313 >gi|198283490|ref|YP_002219811.1| Sua5/YciO/YrdC/YwlC family protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667682|ref|YP_002426096.1| Sua5/YciO/YrdC family protein [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248011|gb|ACH83604.1| Sua5/YciO/YrdC/YwlC family protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519895|gb|ACK80481.1| Sua5/YciO/YrdC family protein [Acidithiobacillus ferrooxidans ATCC 23270] Length = 328 Score = 302 bits (775), Expect = 4e-80, Method: Composition-based stats. Identities = 96/318 (30%), Positives = 156/318 (49%), Gaps = 14/318 (4%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 A+++A E L +G + PTETVYGL D+ NP A+ R++ K RPA +PLI H++ + Sbjct: 10 AMQRAAEILRSGGLVVFPTETVYGLGADAENPAAVARIFAAKGRPADHPLIVHMARRDHL 69 Query: 71 KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + + + P + LA+ +WPGPLTL+L + T T RVP L+ Sbjct: 70 SQWSRDIPPAAFVLARRYWPGPLTLILHR--ACRVPDRVTGGQDTVGLRVPDHPLALMLL 127 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E + +A PSANR GQ+S T V H+ + + I+DGG ++G+ESTI+++ + Sbjct: 128 EAFSGGIAAPSANRFGQVSPTTVAHV-REELGDAMDFILDGGPCRVGIESTILDLSGHQP 186 Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR-- 246 R+LRPG + + ++ + E ++PGML+SHYAPR+ + L Sbjct: 187 -RLLRPGAITLAEIEAVL--EQPVIPQGNDALRAPGMLRSHYAPRTPLYLVPTGHLKAEI 243 Query: 247 ----EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302 R G + + + L A L+ ++ D G + + Sbjct: 244 CRRLRQGQRVGVLAMPATQLPESCLRHHMPPHPAGWARELYAQLRALDQQGLDGLLIEAP 303 Query: 303 PNHGLGIAINNRLERAAA 320 P+ A+++RL RAA+ Sbjct: 304 PSGADWQAVSDRLARAAS 321 >gi|27468631|ref|NP_765268.1| hypothetical protein SE1713 [Staphylococcus epidermidis ATCC 12228] gi|57867582|ref|YP_189286.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis RP62A] gi|251812173|ref|ZP_04826646.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis BCM-HMP0060] gi|282876476|ref|ZP_06285342.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis SK135] gi|293366080|ref|ZP_06612768.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis M23864:W2(grey)] gi|27316178|gb|AAO05312.1|AE016749_258 conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228] gi|57638240|gb|AAW55028.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis RP62A] gi|251804270|gb|EES56927.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis BCM-HMP0060] gi|281294728|gb|EFA87256.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis SK135] gi|291319803|gb|EFE60161.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis M23864:W2(grey)] gi|329726158|gb|EGG62630.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis VCU144] gi|329734140|gb|EGG70458.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis VCU045] gi|329735637|gb|EGG71920.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis VCU028] Length = 347 Score = 302 bits (775), Expect = 4e-80, Method: Composition-based stats. Identities = 86/323 (26%), Positives = 150/323 (46%), Gaps = 15/323 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + G +AIPTETVYGL ++RN A+ +Y K RP+ NPLI H+ I + Sbjct: 21 IDEIKQTFLDGGLVAIPTETVYGLGANARNEEAVENIYVAKGRPSDNPLIVHIHSIEQLD 80 Query: 72 KHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 +D L FWPGP++ +L L + T L++ R+P + L++ Sbjct: 81 DFVEYIDDKVKVLMDEFWPGPISFILPLKQGY-LCSKVTGGLESIAVRMPSHKIGRALLQ 139 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+A PSAN SG+ S T +H+ + ++ I++G + GLEST+++ + Sbjct: 140 IVDEPIAAPSANISGRPSPTTFEHVNRD-LNGKVNGIVNGDQCEEGLESTVIDCT-QFPF 197 Query: 190 RILRPGGLEIETLKRAISVELEYCV-DETSTPQSPGMLKSHYAPRSQVRL-----RAIHV 243 RI RPG + + ++ + + + +E P +PGM HY+P + + + + I Sbjct: 198 RIARPGSITQDMIETKLPHSINRQIYEENEKPIAPGMKYKHYSPETPLTIVKDLNKKIAN 257 Query: 244 NPREALIRFGNVPIKN---IENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSIAF 299 + + + + F + EN+I G K A NL+ + D Sbjct: 258 DDKWSKVAFVFPESQRSLIPENSIFISLCENKGDFKSAGHNLYEILHELDQNEEIEEAYI 317 Query: 300 SSIPNHGLGIAINNRLERAAAPR 322 ++ AI NR+ +AA+ + Sbjct: 318 YGFEDNHHTEAIMNRMLKAASYK 340 >gi|148259247|ref|YP_001233374.1| Sua5/YciO/YrdC/YwlC family protein [Acidiphilium cryptum JF-5] gi|146400928|gb|ABQ29455.1| translation factor SUA5 [Acidiphilium cryptum JF-5] Length = 322 Score = 302 bits (775), Expect = 4e-80, Method: Composition-based stats. Identities = 128/312 (41%), Positives = 174/312 (55%), Gaps = 11/312 (3%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 E L AG +A TETVYGL D+ N +A+ +YE K RP NPLI H D +HA+ Sbjct: 17 ELLRAGELVAFATETVYGLGADATNASAVAAIYEAKGRPRFNPLISHFPDADAAFRHAAA 76 Query: 77 DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPL 135 D + A+ FWPGPLTLVL +DI L+TA L + RVP + L+ G P+ Sbjct: 77 DARAREAAQAFWPGPLTLVLPRRDESDIAALATAGLSSVAVRVPGHGIARALLAATGRPV 136 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 A PSANRSG++S T H++ + + I I++ G ++GLES IV++ V +LRPG Sbjct: 137 AAPSANRSGRLSPTRPAHVI-AGLEGRIAAILESGACEVGLESAIVDLTGATPV-LLRPG 194 Query: 196 GLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNV 255 G+ ETL+ + + + + ++PGML SHYAP +RL A EA + FG Sbjct: 195 GISRETLEAVLG-PVSIASEMGAAVKAPGMLASHYAPVLPMRLGATAPEDGEAWLGFGIE 253 Query: 256 PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD----SGASSIAFSSIPNHGLGIAI 311 P +S NLS G L EAA LF+ + D +G IA + +P GLG AI Sbjct: 254 P---PTLPPVSRNLSPAGDLVEAAARLFDSLHELDAAAELAGLQRIAVARVPERGLGAAI 310 Query: 312 NNRLERAAAPRN 323 N+RL RAAAPR+ Sbjct: 311 NDRLARAAAPRS 322 >gi|294792024|ref|ZP_06757172.1| Sua5/YciO/YrdC/YwlC family protein [Veillonella sp. 6_1_27] gi|294457254|gb|EFG25616.1| Sua5/YciO/YrdC/YwlC family protein [Veillonella sp. 6_1_27] Length = 347 Score = 302 bits (775), Expect = 4e-80, Method: Composition-based stats. Identities = 100/340 (29%), Positives = 166/340 (48%), Gaps = 25/340 (7%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +I++ + L G ++IPTETVYGL + +P A+ ++Y K RP+ NPLI Sbjct: 8 KIITNPSEQDIDTLARALRNGELVSIPTETVYGLGANGLDPEAMDKIYAAKGRPSDNPLI 67 Query: 62 CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 HV + +K + + L FWPGPLT+ L + + +T L R P Sbjct: 68 LHVPNSESIKPLVTEISATAQALMDAFWPGPLTITLP--KSDLVPDRATGGLTRVALRCP 125 Query: 121 CGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + L+E G P+A PSAN SG+ S T + + + + I I+D G IG+EST Sbjct: 126 DHEACRVLLERAGIPIAAPSANISGRPSPTTAEDVYND-MNGRISYILDAGPCTIGVEST 184 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEY---CVDETSTPQSPGMLKSHYAPRSQV 236 +V V + KV ILRPGG+ L+R +S +EY V+ T+TP++PGM +HYAP + + Sbjct: 185 VVEVH-DDKVIILRPGGITKAQLERVVST-VEYDTALVNATTTPKAPGMKYTHYAPDAPM 242 Query: 237 RLRAIHVNPREALIRFGNVPIKNIENAIIS---LNLSKTG------------KLKEAAFN 281 + + ++ + + I+ ++S NL K + Sbjct: 243 TVVVGNPEDIASMFKALSEGIEGPIGCLVSHETYNLIKEDGRFMCHCFGHHRDALALGHD 302 Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 + + +++ + I + + G G+AI NR+E+A++ Sbjct: 303 FYKSLLHFNENHVTLILAEGVDDDGFGVAIMNRMEKASSH 342 >gi|218290081|ref|ZP_03494248.1| Sua5/YciO/YrdC/YwlC family protein [Alicyclobacillus acidocaldarius LAA1] gi|218239915|gb|EED07103.1| Sua5/YciO/YrdC/YwlC family protein [Alicyclobacillus acidocaldarius LAA1] Length = 360 Score = 302 bits (775), Expect = 5e-80, Method: Composition-based stats. Identities = 102/341 (29%), Positives = 162/341 (47%), Gaps = 34/341 (9%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 LR+ + L G +A PTETVYGL ++ A+RR++ K+RP NPLI H++D ++ Sbjct: 19 LREPAQSLRRGGLVAFPTETVYGLGANALEEEAVRRIFAAKERPRDNPLIVHIADDDQLR 78 Query: 72 KHASVD----PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + ++ L + FWPGPLTL+L + + P R+P + Sbjct: 79 DVIDENQPLHEDAVRLMRAFWPGPLTLLLP--AGARLAPSVHPGQPLVGVRMPDHPVARA 136 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LI G P+A PSANRSG+ S T + ++ + I ++DGG IG+EST++ + Sbjct: 137 LIAEAGVPVAAPSANRSGRPSPTTPDDV-AADLDGRIDWLVDGGPCPIGVESTVL-LLEP 194 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCV---DETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 RILRPGG+ E + I + Y D S P +PGM HYAP ++V + Sbjct: 195 DCARILRPGGVTQEMIASVIDRPVLYAADVFDVASAPLAPGMKYRHYAPNARVHVWWGEP 254 Query: 244 NPREALIRFGNVPIKNIENAII---------------------SLNLSKTGKLKEAAFNL 282 + +R + ++ I+ L +E A +L Sbjct: 255 EAIDEAMRAFLLEAVQDDDLIVPALIAPADFVRRFGWALSDERQAALPADTYAEELARHL 314 Query: 283 FNYMKIADDSGASSIAFSSI-PNHGLGIAINNRLERAAAPR 322 + ++ D +GA+ + + P HG+G A+ NRL +A+A R Sbjct: 315 YRLLRAFDRAGATDVLVHGVDPTHGVGAAVMNRLYKASAGR 355 >gi|257077109|ref|ZP_05571470.1| Sua5 superfamily-related protein [Ferroplasma acidarmanus fer1] Length = 348 Score = 301 bits (773), Expect = 6e-80, Method: Composition-based stats. Identities = 98/331 (29%), Positives = 160/331 (48%), Gaps = 18/331 (5%) Query: 2 QIMSITDSN---ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58 +I+ I + N A++ + +G + PTETVYGL D+ NP A +++ K RPA N Sbjct: 3 RIIHINNQNENYAIKVCAGIIKSGGTVVFPTETVYGLGADAFNPGACSKIFIAKNRPADN 62 Query: 59 PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 PLI H+S++ M+ + A +D + WP PLTL+L + + + +A L T C R Sbjct: 63 PLIVHISNMKMLDQVAYIDDGLRKKMENIWPSPLTLLLKKKES--VPDIVSAGLDTVCVR 120 Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 P +LIE G P+A PSAN S + SI + + + + + IID G + G+E Sbjct: 121 FPDNKIALELIEASG-PIAAPSANISTRPSIVDSETAV-EELDGRVDAIIDAGRVRYGVE 178 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAISV----ELEYCVDETSTPQSPGMLKSHYAPR 233 STI++ E R+LR G +E ++ I L +++ +PG+ HYAP Sbjct: 179 STILDCTAE-PYRLLRAGAFSVEDIESIIGKIYVDPLAKGYNQSDVALTPGLKYRHYAPS 237 Query: 234 SQVRLRAIHVNPREALI-----RFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKI 288 ++ L ++ + F + K E ++ + E A NLF + Sbjct: 238 KKLFLIENEEEFKKFISSEISKDFLVLCSKENEKYASGKSIVLGSDIYEIAHNLFYDFRY 297 Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 D+SG P G+G+A+ NR+ +A+ Sbjct: 298 LDNSGKLYGVIQGFPESGIGLAVMNRIRKAS 328 >gi|90420143|ref|ZP_01228051.1| Sua5/YciO/YrdC/YwlC family protein [Aurantimonas manganoxydans SI85-9A1] gi|90335477|gb|EAS49227.1| Sua5/YciO/YrdC/YwlC family protein [Aurantimonas manganoxydans SI85-9A1] Length = 322 Score = 301 bits (772), Expect = 9e-80, Method: Composition-based stats. Identities = 135/302 (44%), Positives = 182/302 (60%), Gaps = 3/302 (0%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81 G + IPTETVYGLA D+ + A+ R++E K RP NPLICHV D++M A + P++ Sbjct: 24 GELVGIPTETVYGLAADATDGAAVARIFEAKGRPRFNPLICHVPDLAMAATLAEIGPVAA 83 Query: 82 HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSAN 141 LA+ FWPGPLT+VL L + +HPL+TA L T R P G +L G PLA PSAN Sbjct: 84 MLAEAFWPGPLTMVLPLKEGSPVHPLATAGLATVAIRAPQGIAGRLAAALGRPLAAPSAN 143 Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIET 201 SG++S TN +L + +PLI+DGG ++G+ESTIV + ++ +LR GG+ Sbjct: 144 PSGRVSPTNAGQVLR-GLGGRLPLILDGGPCEVGVESTIV-LPEADRLVLLRAGGVGRAE 201 Query: 202 LKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIE 261 L RA + + + + +PG L SHYAP +VRL A V P E LI FG P+ + Sbjct: 202 LARATGLPVVDPAGD-AAINAPGQLTSHYAPSGRVRLDATDVAPGEYLIAFGPAPVAGQD 260 Query: 262 NAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 A +NLS +G L+EAA LF + D ++IA + IP GLG AIN+RL RAAAP Sbjct: 261 RAAAIVNLSPSGDLREAAAGLFAALAGFDAPEITAIAVAPIPQSGLGEAINDRLRRAAAP 320 Query: 322 RN 323 R Sbjct: 321 RG 322 >gi|269798157|ref|YP_003312057.1| Sua5/YciO/YrdC/YwlC family protein [Veillonella parvula DSM 2008] gi|269094786|gb|ACZ24777.1| Sua5/YciO/YrdC/YwlC family protein [Veillonella parvula DSM 2008] Length = 343 Score = 301 bits (772), Expect = 9e-80, Method: Composition-based stats. Identities = 98/340 (28%), Positives = 161/340 (47%), Gaps = 25/340 (7%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +I++ + L G ++IPTETVYGL + +P A+ ++Y K RP+ NPLI Sbjct: 4 KIITNPSEQDIDTLARALRNGELVSIPTETVYGLGANGLDPEAMDKIYTAKGRPSDNPLI 63 Query: 62 CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 HV + +K V + L FWPGPLT+ L + + +T L R P Sbjct: 64 LHVPNSESIKPLVTEVSNTAQLLMDTFWPGPLTITLP--KSDLVPDRATGGLPRVALRCP 121 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + L+E G P+A PSAN SG+ S T + + + I I+D G IG+EST Sbjct: 122 DHELCRALLERAGVPIAAPSANISGRPSPTTAQDVY-HDMKDRISYILDAGSCTIGVEST 180 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEY---CVDETSTPQSPGMLKSHYAPRSQV 236 +V V + KV ILRPGG+ L+ +S +EY V+ T+ P++PGM +HYAP + + Sbjct: 181 VVEVH-DDKVIILRPGGITKAQLEDVVST-VEYDTALVNATTKPKAPGMKYTHYAPDAPM 238 Query: 237 RLRAIHVNPREALIRFGNVPIKNIENAIIS---LNLSKTG------------KLKEAAFN 281 + + + + ++ ++S NL K + Sbjct: 239 TVVVGSPEDVASTFKELSAEVEGPIGCLVSHETYNLIKEDTRFICHCFGHHSDALSLGHD 298 Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 + + +++ + I + + G G+AI NR+E+A++ Sbjct: 299 FYKSLLHFNENHVTLILAEGVDDDGFGVAIMNRMEKASSH 338 >gi|312880381|ref|ZP_07740181.1| translation factor SUA5 [Aminomonas paucivorans DSM 12260] gi|310783672|gb|EFQ24070.1| translation factor SUA5 [Aminomonas paucivorans DSM 12260] Length = 338 Score = 301 bits (772), Expect = 9e-80, Method: Composition-based stats. Identities = 112/328 (34%), Positives = 160/328 (48%), Gaps = 13/328 (3%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 + + S L +A L G +A PTETVYGL D+ NP A+ ++ K RP NPLI Sbjct: 8 VTPSSRSRHLEEAVRVLLGGGLVAFPTETVYGLGADATNPRAVGGIFAAKGRPGDNPLIV 67 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 HV+ + + + D + LA FWPGPLTLV++ + I A L T R+P Sbjct: 68 HVASLEEAQALGAFDDRARALAARFWPGPLTLVVE--ADPRIPEEVRAGLPTVAIRMPRH 125 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 + LI G P+A PSANRSG+ S T+ + + IPLI+DGG +++G+EST+V Sbjct: 126 PLAQDLIRLAGVPVAAPSANRSGRPSPTDAASV-REDLDGRIPLILDGGPAEVGVESTVV 184 Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241 +V EK V +LRPGG+ E L+R L Y E +SPG HYAP + L Sbjct: 185 DVTGEK-VVLLRPGGISSEDLERVCG-PLGYPQGEDLLRRSPGTRHRHYAPGVPLWLWDG 242 Query: 242 HVNPREALIRFGNVPIKNIENAIISLNLSKTGKL-----KEAAFNLFNYMKIADDSGASS 296 P E I + ++ + +L +E A LF ++ + GA Sbjct: 243 GDVPEEIRI-LEREGVPWGYVGVLPPPANPAWELRGGTFEEYAALLFRALRRLEQQGARG 301 Query: 297 IAFSSIPNH-GLGIAINNRLERAAAPRN 323 I G+ A+ +RL RA+ R Sbjct: 302 ILAEWPRGKAGIARALRDRLSRASGGRE 329 >gi|319399598|gb|EFV87853.1| SUA5 domain protein [Staphylococcus epidermidis FRI909] Length = 347 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 85/323 (26%), Positives = 149/323 (46%), Gaps = 15/323 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + G +AIPTETVYGL ++RN A+ +Y K RP+ NPLI H+ I + Sbjct: 21 IDEIKQTFLDGGLVAIPTETVYGLGANARNEEAVENIYVAKGRPSDNPLIVHIHSIEQLD 80 Query: 72 KHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 +D L FWPGP++ +L L + T L++ R+P + L++ Sbjct: 81 DFVEHIDDKVKVLMDEFWPGPISFILPLKQGY-LCSKVTGGLESIAVRMPSHKIGRALLQ 139 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+A PSAN SG+ S T +H+ + ++ I++G + GLEST+++ + Sbjct: 140 IVDEPIAAPSANISGRPSPTTFEHVNRD-LNGKVNGIVNGDQCEEGLESTVIDCT-QFPF 197 Query: 190 RILRPGGLEIETLKRAISVELEYCV-DETSTPQSPGMLKSHYAPRSQVRL-----RAIHV 243 RI RPG + + ++ + + + +E P +PGM HY+P + + + + I Sbjct: 198 RIARPGSITQDMIESRLPHSINRQIYEENEKPIAPGMKYKHYSPETPLTIVKDLNKKIAN 257 Query: 244 NPREALIRFGNVPIKN---IENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSIAF 299 + + + + F + EN+I K A NL+ + D Sbjct: 258 DDKWSKVAFVFPQSQKSLIPENSIFISLCENKEDFKSAGHNLYEILHELDQNEEIEEAYI 317 Query: 300 SSIPNHGLGIAINNRLERAAAPR 322 ++ AI NR+ +AA+ + Sbjct: 318 YGFEDNHHTEAIMNRMLKAASYK 340 >gi|182413416|ref|YP_001818482.1| Sua5/YciO/YrdC/YwlC family protein [Opitutus terrae PB90-1] gi|177840630|gb|ACB74882.1| Sua5/YciO/YrdC/YwlC family protein [Opitutus terrae PB90-1] Length = 331 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 108/319 (33%), Positives = 166/319 (52%), Gaps = 10/319 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 L + L G +A+PTETVYGLA ++ + A R+++ K RPA +PLI H+ D + Sbjct: 14 PRNLARLARMLRDGELVAVPTETVYGLAANALDARACRKIFRAKGRPANDPLIVHIHDRA 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + A + + LA+ FWPGPLT+VL S + + ++ L + R+P ++L Sbjct: 74 QLDLLAETNSAAERLARAFWPGPLTMVLPRRSI--VPAVVSSGLPSVAVRMPAHPLFRQL 131 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G P+A PSAN G IS T+ H+ + + + IP I+DGG IG+ESTIV+++ + Sbjct: 132 LRRAGMPVAAPSANPFGYISPTSAAHV-RAGLGRRIPAILDGGECPIGVESTIVDLRDPR 190 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETS--TPQSPGMLKSHYAPRSQVRLRAIHVNP 245 ++LRPG + L+ + V + T+ P SPG+L HY+PR+ +L Sbjct: 191 HPQLLRPGAVSRRELESVLGVRVRMPTRRTAPHAPISPGLLSRHYSPRTPSQLHERFSAR 250 Query: 246 REALIRFGNVPIKNIENAIIS----LNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSS 301 R I A +S LS+ G L+EAA LF+ +++ D + F Sbjct: 251 EVGDSRVDEAWIFVARPAGVSGENIFWLSERGSLREAARRLFHTLRLVDAQRFKRLHFER 310 Query: 302 IPNHGLGIAINNRLERAAA 320 GL AIN+RL RAA Sbjct: 311 ARGGGLADAINDRLARAAG 329 >gi|331251224|ref|XP_003338212.1| SUA5 protein [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309317202|gb|EFP93793.1| SUA5 protein [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 444 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 103/382 (26%), Positives = 169/382 (44%), Gaps = 71/382 (18%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ A + + + +A PTETVYGL + + TA+ ++++ K RP+ NPLI HVS ++ Sbjct: 52 ATGIQAAAKVIQSEDLVAFPTETVYGLGASALSSTAVSKIFKAKGRPSDNPLIVHVSSLN 111 Query: 69 MVKKHA----SVDPLSLHLAKLFWPGPLTLVL----DLLSTTDIHPLSTANLKTACFRVP 120 ++K + L + FWPGPLTL++ + I L T L T R+P Sbjct: 112 LLKTFVPPDWNFPATYQALIERFWPGPLTLLVPTTSPVQPNCPISNLVTCGLPTVAVRMP 171 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 ++ LI G P+A PSAN SG+ S T +H+ + +IP+IIDGG ++G+EST Sbjct: 172 AHSISRALIAESGVPIAAPSANLSGRPSPTTAQHVERD-MKTKIPMIIDGGACQVGVEST 230 Query: 180 IVN-VQCEKKVRILRPGGLEIETLKRAI---------------SVELEYCVDE--TSTPQ 221 +V+ + + +VRILR GGL +E ++ + V + D+ + P Sbjct: 231 VVDGLNPDGRVRILRLGGLSVEDIEACLIEAGLNLSDGKPILAGVYNQDYRDKELEAKPT 290 Query: 222 SPGMLKSHYAPRSQVRLRAIHVNPR--------------------------EALIRFGNV 255 +PGM HYAP ++V + + P +R G + Sbjct: 291 TPGMKYKHYAPHAKVVILDPVLVPNSDSDQQESLRGVDELVSGICSEETDSSKGLRIGLM 350 Query: 256 PI----------------KNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDS-GASSIA 298 I K + NL + +A LF ++ D+ I Sbjct: 351 LIDDSPLHKSFIACAQSEKYGHHQFCYSNLGLESQPAISAQRLFAALRYLDEELRVDIIY 410 Query: 299 FSSIPNHGLGIAINNRLERAAA 320 + GLG + RL +A+ Sbjct: 411 VERLSEVGLGATVMERLRKASG 432 >gi|255941190|ref|XP_002561364.1| Pc16g10540 [Penicillium chrysogenum Wisconsin 54-1255] gi|211585987|emb|CAP93724.1| Pc16g10540 [Penicillium chrysogenum Wisconsin 54-1255] Length = 507 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 102/396 (25%), Positives = 170/396 (42%), Gaps = 82/396 (20%) Query: 5 SITDSNALRKACEFLDAGLP-IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 +S A+ +A + L + +A PTETVYGL D+ ++++ +Y K+RP+ NPLI H Sbjct: 109 KTPESQAIEEAVKLLRSSDIPVAFPTETVYGLGADATRSSSVQGIYRAKQRPSDNPLIVH 168 Query: 64 VSDISMVKKHASVDP----------------LSLHLAKLFWPGPLTLVLDLLSTTDIHPL 107 V + M+++ + P + L FWPGPLT++L S + + P Sbjct: 169 VDSLDMLERLLNPTPQGSPSSTKTPPIALPSIYKPLIDRFWPGPLTIILPNPSGSILAPE 228 Query: 108 STANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLI 166 T++L T R+P + LI PLA PSAN S + S T +H+ + I +I Sbjct: 229 VTSSLTTFGVRMPSSPLARLLIHAADRPLAAPSANASTKPSPTTAQHVY-HDLKDRIDMI 287 Query: 167 IDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVE------LEYCVDETSTP 220 +DGG S +G+EST+V+ C+ V +LRPGG+ I+ +++ E + +D P Sbjct: 288 LDGGASGVGVESTVVDGLCDPPV-VLRPGGIGIDEIRKCEGWENVTVGYKDGTLDVKEVP 346 Query: 221 QSPGMLKSHYAPRSQVRLRAIHVNPREALI--------------RFGNVPIKNIENAI-- 264 ++PGM HY+P+++V L NP + + G + +N E + Sbjct: 347 RAPGMKYRHYSPKARVVLFEPTSNPAGVMKHVLKDLKDTAIGAHKIGVIRTRNWELGLGL 406 Query: 265 --------------------------------------ISLNLSKTGKLKEAAFNLFNYM 286 ++ + A LF + Sbjct: 407 ASKDDIARTMNPVPSPIGDVVGFPVPVLQDGNSSSCTKVAYDYHLGSDAVSIAHGLFAAL 466 Query: 287 KIADDSGASSIAFSSIPNHG--LGIAINNRLERAAA 320 + D+ I + + L A+ NRL +AA Sbjct: 467 RGLDELDVDVIYVEGVSDREGDLAAAVMNRLRKAAG 502 >gi|268610025|ref|ZP_06143752.1| Sua5/YciO/YrdC/YwlC family protein [Ruminococcus flavefaciens FD-1] Length = 337 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 107/334 (32%), Positives = 170/334 (50%), Gaps = 17/334 (5%) Query: 1 MQIMSITDSNA-LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 M + ++DS A L KA + + G + IPTETVYGL D+ N A+R ++ K RPA NP Sbjct: 1 MDTVLLSDSEADLLKAAKLIKDGNIVGIPTETVYGLGADASNEAAVRNIFAAKGRPADNP 60 Query: 60 LICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 LI H++D S K+ +S+ L+ LA+ F PGPLT+VL I +++ L T R Sbjct: 61 LIVHLADFSHAVKYTSSIPQLAYRLAERFCPGPLTMVLP--KNDSIPMVTSGGLDTVGIR 118 Query: 119 VPCGFTK-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 VP ++IE G P+A PSAN SG S T+ H+++ + ++ I+DGG S+ G+E Sbjct: 119 VPSHPVMHRIIELSGCPIAAPSANTSGYPSPTSAAHVMND-MNGKVAAIVDGGESEFGVE 177 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKR-----AISVELEYCVDETSTPQSPGMLKSHYAP 232 ST++ ++ E VRILRPG + E L I + + SPGM HY+P Sbjct: 178 STVIAIEGESTVRILRPGCITREMLLELCDEVIIDHAILNELAAGEKAASPGMKYKHYSP 237 Query: 233 RSQVRLRAIHVNPREALIRFGN------VPIKNIENAIISLNLSKTGKLKEAAFNLFNYM 286 ++ + + ++ + + + ++ G + A +F + Sbjct: 238 KADIVMVEGDLDSFIDYVSKHDPENTFSLIYDEDGEKFPYRYMTYGGTSLQQAHLIFAKL 297 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + D+ GA + + G+G+A+ NRL RAA Sbjct: 298 RELDEIGAEKVFVRAPSKDGVGLAVYNRLIRAAG 331 >gi|194335648|ref|YP_002017442.1| Sua5/YciO/YrdC/YwlC family protein [Pelodictyon phaeoclathratiforme BU-1] gi|194308125|gb|ACF42825.1| Sua5/YciO/YrdC/YwlC family protein [Pelodictyon phaeoclathratiforme BU-1] Length = 317 Score = 300 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 107/324 (33%), Positives = 162/324 (50%), Gaps = 13/324 (4%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 MQ + +TDS +A L++G +A PTETVYGL +P AI +L+ K RP+ NPL Sbjct: 1 MQTI-LTDSP--EEAAAILNSGGVVAFPTETVYGLGAGICHPEAILQLFRAKGRPSDNPL 57 Query: 61 ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I H+ I + + A + + L + F+PGPLTLVL S+ + TA L+T R Sbjct: 58 IVHLGSIDQLDEVAEALHADARALIEHFFPGPLTLVLQKKSS--VPFSVTAGLETVGVRC 115 Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P ++ + G P+A PSANRSG S T+ + ++ + I ++ G S IGLES Sbjct: 116 PSNPVAQEFLRLCGCPVAAPSANRSGLPSATSWEAVM-EDLEGRIECVLRGRPSTIGLES 174 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDET--STPQSPGMLKSHYAPRSQV 236 TIV K + +LR G + +E L+ + V +P+ PG+ HYAP++ + Sbjct: 175 TIVECSGAKPL-LLRAGAITLEQLREVVPEITVNAVTNKPEESPKCPGLKYPHYAPKASI 233 Query: 237 RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296 L + +P ++ + + + T L+E LF + ++ D G Sbjct: 234 ILWSGEKSPVADSPSSASIGLSAPPEGVTLCKVCST--LEEYGRELFGFFRLCDAEGIGV 291 Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320 I N GLG AI +RL RAAA Sbjct: 292 IYCELPSNEGLGRAIRDRLLRAAA 315 >gi|37678973|ref|NP_933582.1| putative translation factor [Vibrio vulnificus YJ016] gi|37197715|dbj|BAC93553.1| putative translation factor [Vibrio vulnificus YJ016] Length = 328 Score = 300 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 98/317 (30%), Positives = 156/317 (49%), Gaps = 8/317 (2%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 +S + + +A E L +G +AIPTETVYGLA D+ NP A+++++ K RPA +PLI H Sbjct: 14 LSALEQKDIDQAKEILASGELVAIPTETVYGLAADATNPDAVKKIFAAKGRPADHPLIVH 73 Query: 64 VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 + + + A + + LA+ +WPGP+TL+L + P+ T L+T R+P Sbjct: 74 IGRVEQLTDWAIDIPEEAYTLAQAYWPGPVTLLLKKAPH--VTPVVTGGLETIGIRMPAH 131 Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 L+++ G +A PSAN ++S T+ KH+++S + +I ++DGG GLESTIV Sbjct: 132 DVFATLLQSSGMAVAAPSANPYKKLSPTSAKHVMNS-LGGKIAAVLDGGDCAHGLESTIV 190 Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241 ++ EK RILR G + L + E+ V PG + SHY P ++VRL Sbjct: 191 DLT-EKPFRILRTGPVTAAQLSATLGEEVSSPVSHNVAV--PGNVTSHYQPNTRVRLVQA 247 Query: 242 HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSS 301 + + + E + +L+ + AD G I Sbjct: 248 SDLALVGDKKIAYLHYTPFTAQENVEGRQMPSSVAEYSHDLYRTLDEADKWGCEEIWVER 307 Query: 302 IPNHGLGIAINNRLERA 318 P A+++RL RA Sbjct: 308 PPVTESWFAVHDRLNRA 324 >gi|294011241|ref|YP_003544701.1| putative translation factor [Sphingobium japonicum UT26S] gi|292674571|dbj|BAI96089.1| putative translation factor [Sphingobium japonicum UT26S] Length = 318 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 136/313 (43%), Positives = 186/313 (59%), Gaps = 12/313 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S ALR+A + AG P+A+PTETVYGLA D+ + A+ +Y K RP+ NPLI HV+D Sbjct: 17 SEALREAALLIRAGEPVAVPTETVYGLAADATDSNAVAAIYAAKGRPSFNPLIVHVADQE 76 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKL 127 M + A P++ LA+ FWPG LTLVL + + + PL A L T R+P + L Sbjct: 77 MAGRLAEFSPVADRLAERFWPGALTLVLPARADSGLSPLVMAGLPTVALRLPAHPAMRAL 136 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I G PLA PSANRSG IS T +H++ +S+ +I +I+D G + GLESTIV + + Sbjct: 137 IRESGRPLAAPSANRSGSISPTRAEHVM-ASLNGKIRMILDEGPTSEGLESTIVAPETD- 194 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 +R+LRPG + L+ A + + D T ++PG L+SHYAP VRL A+ E Sbjct: 195 CIRLLRPGPVTAAMLEEAGMLPVVTGADNT-KIEAPGQLESHYAPSKPVRLNALKAEKNE 253 Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307 LI FG +P +NLS L+EAA +LF + + D S A IA + IPN G+ Sbjct: 254 YLIGFGLMPCH--------VNLSPDADLREAAAHLFAALHMGDASAAERIAVAPIPNEGI 305 Query: 308 GIAINNRLERAAA 320 G+AIN+RL RAAA Sbjct: 306 GVAINDRLRRAAA 318 >gi|254420853|ref|ZP_05034577.1| Sua5/YciO/YrdC/YwlC family protein, putative [Brevundimonas sp. BAL3] gi|196187030|gb|EDX82006.1| Sua5/YciO/YrdC/YwlC family protein, putative [Brevundimonas sp. BAL3] Length = 309 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 113/309 (36%), Positives = 161/309 (52%), Gaps = 13/309 (4%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 +A L G I +PTETVYGL D+ N A+ +++ K RP NPLI HV+D + Sbjct: 10 DQAATALRRGELILLPTETVYGLGADAGNAEAVAAIFQAKGRPRFNPLISHVADAVAAEA 69 Query: 73 HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETY 131 D + LA+ FWPGPLTLV + + L+ A L + RVP + ++ + Sbjct: 70 VGVFDVSARALAEAFWPGPLTLVTPVRDGGRVCDLARAGLDSVAIRVPGHAAARAVLSAF 129 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 G P+ PSANRSG+ S TN + + + +DGG +GLEST+V+V +V + Sbjct: 130 GGPVVAPSANRSGRPSPTNFADAVEET-GFAVTAAVDGGPCAVGLESTVVSVLG-GRVSL 187 Query: 192 LRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIR 251 LRPG + ++ + D +SPG L +HYAP + VR+ + E L+ Sbjct: 188 LRPGAVTRAEIEAVVG----PLADGGDGHRSPGRLAAHYAPDAPVRIDVVAPRDGEILLG 243 Query: 252 FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAI 311 FG +LS +G L+EAA NLF + AD + + IA S IP+ GLG AI Sbjct: 244 FGPGA------GDPRWSLSVSGDLREAAANLFRLFREADRTHPAGIAVSPIPSQGLGEAI 297 Query: 312 NNRLERAAA 320 N+RL RAA Sbjct: 298 NDRLRRAAG 306 >gi|242241522|ref|ZP_04795967.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis W23144] gi|242235065|gb|EES37376.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis W23144] Length = 347 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 85/323 (26%), Positives = 146/323 (45%), Gaps = 15/323 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + G +AIPTETVYGL ++RN A+ +Y K RP+ NPLI H+ I + Sbjct: 21 IDEIKQTFLDGGLVAIPTETVYGLGANARNEEAVENIYVAKGRPSDNPLIVHIHSIEQLD 80 Query: 72 KHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 +D L FWPGP++ +L L + T L++ R+P + L++ Sbjct: 81 DFVEHIDDKVKVLMDEFWPGPISFILPLKQGY-LCSKVTGGLESIAVRMPSHKIGRALLQ 139 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+A PSAN SG+ S T +H+ + ++ I++G + GLEST+++ + Sbjct: 140 IVDEPIAAPSANISGRPSPTTFEHVNRD-LNGKVNGIVNGDQCEEGLESTVIDCT-QFPF 197 Query: 190 RILRPGGLEIETLKRAISVELEYCV-DETSTPQSPGMLKSHYAPRSQVRLR-------AI 241 RI RPG + + ++ + + + +E P +PGM HY+P + + + A Sbjct: 198 RIARPGSITQDMIETKLPHSINRQIYEENEKPIAPGMKYKHYSPETPLTIVKDLNKKIAN 257 Query: 242 HVNPREALIRFGNVPIKNIENAIISLNLSKTG-KLKEAAFNLFNYMKIADD-SGASSIAF 299 + F I I ++L + K A NL+ + D Sbjct: 258 DDKWSKVAFVFPQSQRSLIPENSIFISLCENKEDFKSAGHNLYEILHELDQNEEIEEAYI 317 Query: 300 SSIPNHGLGIAINNRLERAAAPR 322 ++ AI NR+ +AA+ + Sbjct: 318 YGFEDNHHTEAIMNRMLKAASYK 340 >gi|145592582|ref|YP_001156879.1| Sua5/YciO/YrdC/YwlC family protein [Salinispora tropica CNB-440] gi|145301919|gb|ABP52501.1| translation factor SUA5 [Salinispora tropica CNB-440] Length = 323 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 113/316 (35%), Positives = 179/316 (56%), Gaps = 9/316 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A L AG +A+PTETVYGL ++ + A+ R++ K RP+ +PLI H+++ + Sbjct: 10 DRGVAEAAAVLRAGGLVALPTETVYGLGANALDAPAVARIFAAKARPSFDPLISHLAEAA 69 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KK 126 ++K +V LA+ FWPGPLTL++D + I P+ T+ L+T RVP + Sbjct: 70 ELEKLVGTVPAAVAELAERFWPGPLTLIVDRPAV--IPPIVTSGLETMAVRVPDHAATRG 127 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LI G P+A PSANR GQ+S T +H++ + + + +++DGG ++ G+ESTIV+ + + Sbjct: 128 LIAAAGVPVAAPSANRFGQLSPTRAEHVV-AGLGAAVDVVLDGGPTRCGIESTIVDARGD 186 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246 + V +LR G L +E L+ A+ + + P +PG L +HYAPR+++RL Sbjct: 187 RPV-VLRLGALPVELLQEAVG-PVLVRAGSSGQPVAPGTLAAHYAPRTRLRLATDTDPAD 244 Query: 247 EALIRFGNVPIKNIENAIISL--NLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPN 304 + R G + + + LS G L EAA LF+ + D +G I S+P Sbjct: 245 GGVSRQGFLGFRGCPAGDWAAVEVLSSKGDLTEAAARLFDALHRLDGAGVDEILVESVPE 304 Query: 305 HGLGIAINNRLERAAA 320 G+G AIN+RL RAAA Sbjct: 305 VGVGRAINDRLRRAAA 320 >gi|223043990|ref|ZP_03614031.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus capitis SK14] gi|222442705|gb|EEE48809.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus capitis SK14] Length = 347 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 92/322 (28%), Positives = 151/322 (46%), Gaps = 15/322 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L + E L G +AIPTETVYGL ++RN A+R++YE K RP+ NPLI H+ ++ Sbjct: 21 LNEIKETLLNGGLVAIPTETVYGLGANARNEHAVRKIYEAKGRPSDNPLIVHIHQREQLE 80 Query: 72 KHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + +D L FWPGP++ +L L T + T L + R+P + L++ Sbjct: 81 EFVDGIDERVSKLMDAFWPGPISFILP-LKTGYLCEKVTGGLNSIAVRMPSHKIGRALLQ 139 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+A PSAN SG+ S T H+ + ++ I++G S+ GLEST+++ + Sbjct: 140 YIDEPIAAPSANLSGRPSPTKFDHVF-QDLNGKVDGIVNGDQSEEGLESTVLDCT-QYPF 197 Query: 190 RILRPGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRLRA------IH 242 RI RPG + +++ + ++ E P +PGM HY+P + + + + Sbjct: 198 RIARPGSITTSMIEQVLPGSIQKANYFEKDKPIAPGMKYKHYSPDTPLTIVENLTHKIDN 257 Query: 243 VNPREALIRFGNVPIKNI--ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG-ASSIAF 299 ++ + +K + ENA +K A NL++ + D S Sbjct: 258 NEKWNDVVFIFPISMKYLLPENAQFIPLCDDEQDIKGANHNLYSVLHSIDSSNDIKHAYI 317 Query: 300 SSIPNHGLGIAINNRLERAAAP 321 S AI NR+ +AA Sbjct: 318 YSFEKKDQSEAIMNRMLKAAGN 339 >gi|320161912|ref|YP_004175137.1| hypothetical protein ANT_25110 [Anaerolinea thermophila UNI-1] gi|319995766|dbj|BAJ64537.1| hypothetical protein ANT_25110 [Anaerolinea thermophila UNI-1] Length = 360 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 110/336 (32%), Positives = 166/336 (49%), Gaps = 29/336 (8%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +AL +A E L +G +A PTETVYGL ++ + A++R++E K RPA +PLI H+ Sbjct: 19 DALLEATECLRSGGLVAFPTETVYGLGGNALDGRAVQRIFEAKGRPANDPLIVHLPSADA 78 Query: 70 VKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + P + LA+ FWPGPLTL+L + TA L T RVP + L Sbjct: 79 LPMVVKTIPTIVSTLAEHFWPGPLTLILPRGDNVPLS--VTAGLDTVAVRVPSHPVAQAL 136 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ G +A PSANR G +S T+ +H+L + I +++DGG + IG+EST++++ Sbjct: 137 LQMSGLAIAAPSANRFGGVSPTSAEHVLRD-LEGRIEMVLDGGSTPIGVESTVLDIT-AP 194 Query: 188 KVRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPRS-QVRLRAI--- 241 RILRPGG+ E L+ + LE + SPG+L HYAP ++ L I Sbjct: 195 IPRILRPGGISREALEAVLGRVELLERKASQEEAQASPGLLDKHYAPHHARLILLEIPQT 254 Query: 242 ----------HVNPREALIRFGNVPIKNIEN-------AIISLNLSKTGKLKEAAFNLFN 284 ++ +R G + A+ L L L A NL+ Sbjct: 255 QELWEEFTHQVAQAKKEGLRVGALVADEDLTYLDAHFPALARLALGSLSDLAAVARNLYA 314 Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 M+ D++G + GLG+AI +RL RAA+ Sbjct: 315 GMRAMDEAGIDILLVRDFGTGGLGLAIRDRLYRAAS 350 >gi|320170442|gb|EFW47341.1| Sua5/YciO/YrdC/YwlC family protein [Capsaspora owczarzaki ATCC 30864] Length = 331 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 93/324 (28%), Positives = 146/324 (45%), Gaps = 37/324 (11%) Query: 31 TVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA--SVDPLSLHLAKLFW 88 TVYGLA ++ + A+ +++ K RPA NPLI HV+D S +++ + L FW Sbjct: 4 TVYGLAANAFSDDAVAKIFRAKNRPADNPLIVHVADESQLREVVEGEISQREQQLIAAFW 63 Query: 89 PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-KLIETYGHPLAIPSANRSGQIS 147 PGPLTL+L + L TA L T R+P +I G PLA PSAN SG+ S Sbjct: 64 PGPLTLILPR--KISVSRLVTAGLTTVGVRMPSHPVAKAIIARCGKPLAAPSANISGRPS 121 Query: 148 ITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS 207 T H++ + K + I+DGG + +G+EST+++ E + ILRPGG+ E ++ I Sbjct: 122 PTCGAHVIGDMMGK-VAGIVDGGATGVGVESTVIDCSPEIPI-ILRPGGITKEEIETIIG 179 Query: 208 V---------------ELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI----------- 241 + P++PGM +HYAP++ V + Sbjct: 180 PVTYAQELHSNERPESAKDVSALSGHVPRAPGMKYAHYAPKAPVTVVEGSPQFLQSLVDA 239 Query: 242 --HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD--DSGASSI 297 +P + + A + + + A +L++ ++ D I Sbjct: 240 HHQQHPTSKIGVLATDESRGQYRADVVVTCGARSDVASIARSLYDALRQFDIATPSVDCI 299 Query: 298 AFSSIPNHGLGIAINNRLERAAAP 321 S GLG A+ NRL +AA+ Sbjct: 300 YSESFSTDGLGAAVMNRLLKAASH 323 >gi|169832288|ref|YP_001718270.1| Sua5/YciO/YrdC/YwlC family protein [Candidatus Desulforudis audaxviator MP104C] gi|169639132|gb|ACA60638.1| Sua5/YciO/YrdC/YwlC family protein [Candidatus Desulforudis audaxviator MP104C] Length = 358 Score = 299 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 105/331 (31%), Positives = 152/331 (45%), Gaps = 21/331 (6%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + A + G +A PTETVYGL ++ + A++R++ +K RP NPLI HV + Sbjct: 24 DRRTITAAAALIREGGLVAFPTETVYGLGANALDRQAVKRVFAVKGRPDDNPLIVHVGER 83 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + + + P + L LFWPGPLTLVL + + P TA L R+P Sbjct: 84 AEISGLVRDLPPSAEKLIGLFWPGPLTLVLPR--SDRVSPAVTAGLDKVAVRMPAHPVAL 141 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LI G P+A PSAN SG+ S T H+L + I ++DGG +G+EST++++ Sbjct: 142 ALIREAGVPVAAPSANTSGRPSPTTAAHVL-EDLDGRIEAVLDGGPVPVGVESTVLDLTV 200 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245 V ILRPGG+ L + + + PQ+PGM HYAPR+ + L Sbjct: 201 SPPV-ILRPGGVTGRQLAAVLGAVVHHPEAAPGRPQAPGMKYRHYAPRTPLVLVEGPPAA 259 Query: 246 REALIR---------------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD 290 A IR + K+ AA L++ ++ D Sbjct: 260 VTARIRELAAAARASGERVAVLARTDTAAYYPDGPVVPCGKSNDPGSAAAALYSALRECD 319 Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 GA I + GLG A+ NRL +AAA Sbjct: 320 ALGADLILAEGLAAEGLGRAVMNRLRKAAAK 350 >gi|313893573|ref|ZP_07827142.1| Sua5/YciO/YrdC/YwlC family protein [Veillonella sp. oral taxon 158 str. F0412] gi|313441844|gb|EFR60267.1| Sua5/YciO/YrdC/YwlC family protein [Veillonella sp. oral taxon 158 str. F0412] Length = 343 Score = 299 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 96/340 (28%), Positives = 156/340 (45%), Gaps = 25/340 (7%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +I++ + L G ++IPTETVYGL + +P A+ ++Y K RP+ NPLI Sbjct: 4 KIITNPSEQDIDMLARALRNGELVSIPTETVYGLGANGLDPEAMDKIYAAKGRPSDNPLI 63 Query: 62 CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 HV + +K V + L FWPGPLT+ L + + +T L R P Sbjct: 64 LHVPNSESIKPLVTEVSSTAQALMDSFWPGPLTITLP--KSDLVPDRATGGLPRVALRCP 121 Query: 121 CGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + L++ G P+A PSAN SG+ S T + + + + I I+D G IG+EST Sbjct: 122 DHDGCRVLLQRAGVPIAAPSANISGRPSPTTAQDVYND-MNGRISYILDAGPCTIGVEST 180 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEY---CVDETSTPQSPGMLKSHYAPRSQV 236 +V V + KV ILRPGG+ L+ +S +EY V + P++PGM +HYAP + + Sbjct: 181 VVEVH-DDKVIILRPGGITKAQLETVVST-VEYDTALVGAETKPKAPGMKYTHYAPDAPM 238 Query: 237 ---------------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFN 281 L P L+ + ++ + G + Sbjct: 239 TVVVGTPESVANTFNELSKGIEGPIGCLVSHETYELIKDDSRFMCHCFGHHGDALALGHD 298 Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 + + +++ + I + + G G+AI NR+E+A+ Sbjct: 299 FYKSLLHFNENHVTLILAEGVNDDGFGVAIMNRMEKASGH 338 >gi|242371607|ref|ZP_04817181.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis M23864:W1] gi|242350674|gb|EES42275.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis M23864:W1] Length = 347 Score = 299 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 90/322 (27%), Positives = 150/322 (46%), Gaps = 15/322 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + G +AIPTETVYGL ++++ A++++YE K RP+ NPLI HV + Sbjct: 21 INDIKDTVIKGGLVAIPTETVYGLGANAKDEVAVKKIYEAKGRPSDNPLIVHVHHRKQLD 80 Query: 72 KHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 K +D L + FWPGP++ +L L S + T L + R+P + L++ Sbjct: 81 KFVEHIDERVSKLMEAFWPGPISFILPLKSGY-LCETVTGGLNSIAVRMPSHKIGRALLQ 139 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+A PSAN SG+ S T H+ + +I I++G S+ GLEST+++ + Sbjct: 140 VIDEPIAAPSANLSGRPSPTTFDHVF-HDLNHKIDGIVNGDQSEEGLESTVLDCT-QFPF 197 Query: 190 RILRPGGLEIETLKRAISVEL-EYCVDETSTPQSPGMLKSHYAPRSQVRL-----RAIHV 243 RI RPG + E +++ + + + E P +PGM HY+P + + + I Sbjct: 198 RIARPGSVTKEMIEKVLPESVQDIHFTENEKPIAPGMKYKHYSPDTPLTIIENLNHKIDN 257 Query: 244 NPREALIRFGNVPIKN--IENAIISLNLSKTG-KLKEAAFNLFNYMKIADD-SGASSIAF 299 N + F + + ++L K +K A NL++ + D S Sbjct: 258 NEKWKDTAFIFPESMKSLLPESAQFISLCKNAQDIKTANHNLYSILHSIDRSSDIQRAFI 317 Query: 300 SSIPNHGLGIAINNRLERAAAP 321 AI NR+ +AA Sbjct: 318 FGFEKKDQSEAIMNRMLKAAGN 339 >gi|314934185|ref|ZP_07841546.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus caprae C87] gi|313653090|gb|EFS16851.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus caprae C87] Length = 347 Score = 299 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 92/322 (28%), Positives = 151/322 (46%), Gaps = 15/322 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L + E L G +AIPTETVYGL ++RN A+R++YE K RP+ NPLI H+ ++ Sbjct: 21 LNEIKETLLNGGLVAIPTETVYGLGANARNEHAVRKIYEAKGRPSDNPLIVHIHQREQLE 80 Query: 72 KHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + +D L FWPGP++ +L L T + T L + R+P + L++ Sbjct: 81 EFVDGIDERVSKLMDAFWPGPISFILP-LKTGYLCEKVTGGLNSIAVRMPSHKIGRALLQ 139 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+A PSAN SG+ S T H+ + ++ I++G S+ GLEST+++ + Sbjct: 140 YIDEPIAAPSANLSGRPSPTKFDHVF-QDLNGKVDGIVNGDQSEEGLESTVLDCT-QYPF 197 Query: 190 RILRPGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRLRA------IH 242 RI RPG + +++ + ++ E P +PGM HY+P + + + + Sbjct: 198 RIARPGSITTSMIEQVLPGSIQKANYFEKDKPIAPGMKYKHYSPDTPLTIVENLTHKIDN 257 Query: 243 VNPREALIRFGNVPIKNI--ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG-ASSIAF 299 ++ + +K + ENA +K A NL++ + D S Sbjct: 258 NEKWNDVVFIFPISMKYLLPENAQFIPLCDDEQDIKGANHNLYSVLHSIDSSNDIKHAYI 317 Query: 300 SSIPNHGLGIAINNRLERAAAP 321 S AI NR+ +AA Sbjct: 318 YSFEKKDQSEAIMNRMLKAAGN 339 >gi|86135055|ref|ZP_01053637.1| Putative translation factor (SUA5) [Polaribacter sp. MED152] gi|85821918|gb|EAQ43065.1| Putative translation factor (SUA5) [Polaribacter sp. MED152] Length = 318 Score = 299 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 111/326 (34%), Positives = 169/326 (51%), Gaps = 16/326 (4%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I+S ++KA L+ +AIPTETVYGLA + + AI+ ++E K+RP NPL Sbjct: 1 MSIIS----KDIQKAISILENEELVAIPTETVYGLAGNIFSEKAIKSIFETKQRPLFNPL 56 Query: 61 ICHVSDISMVKK-HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I HVS I + K A + + LA+ FWPG +TLVL +I L TA T R+ Sbjct: 57 IVHVSGIDQLDKIVAEIPAKAKLLAEKFWPGSMTLVL--KKNPNIPDLITAGKSTVAVRI 114 Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T +L+ PLA PSAN IS T +H+ + + +++DGG K G+ES Sbjct: 115 PNHKTTLELLSKLPFPLAAPSANPFNNISPTKPEHVAR-YFKESLEMVLDGGTCKNGIES 173 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238 TI+ + V I R G L +E ++ + + ++ P +PGML+ HYAP+++ L Sbjct: 174 TIIGFNNNEPV-IYRLGALALEEIENVVG-PVSVMNEKEKNPDAPGMLQKHYAPKTKTIL 231 Query: 239 --RAIHVNPREALIRFGNVPIK-NIENAIIS--LNLSKTGKLKEAAFNLFNYMKIADDSG 293 + + G + + +N + + LS + L+EAA NL++ M D Sbjct: 232 TTDVKSEIEKYKTSKIGVLSFSTSFKNNAVDAEIRLSTSNNLQEAASNLYDSMHQLDHLN 291 Query: 294 ASSIAFSSIPNHGLGIAINNRLERAA 319 I +P GLG ++N+RL+RAA Sbjct: 292 LDIIIVEKLPEFGLGKSMNDRLKRAA 317 >gi|331236260|ref|XP_003330789.1| SUA5 protein [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309309779|gb|EFP86370.1| SUA5 protein [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 423 Score = 299 bits (766), Expect = 4e-79, Method: Composition-based stats. Identities = 102/361 (28%), Positives = 169/361 (46%), Gaps = 50/361 (13%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ A + + + +A PTETVYGL + + TA+ ++++ K RP+ NPLI HVS ++ Sbjct: 52 ATGIQAAAKVIQSEDLVAFPTETVYGLGASALSSTAVSKIFKAKGRPSDNPLIVHVSSLN 111 Query: 69 MVKKHA----SVDPLSLHLAKLFWPGPLTLVLD----LLSTTDIHPLSTANLKTACFRVP 120 ++K + L + FWPGPLTL++ + I L T L T R+P Sbjct: 112 LLKTFVPPDWNFPATYQALIERFWPGPLTLLVPTTSSVQPNCPISNLVTCGLPTVAVRMP 171 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 ++ LI G P+A PSAN SG+ S T +H+ + +IP+IIDGG ++G+EST Sbjct: 172 AHSISRALIAESGVPIAAPSANLSGRPSPTTAQHVERD-MKTKIPMIIDGGACQVGVEST 230 Query: 180 IVN-VQCEKKVRILRPGGLEIETLKRAI---------------SVELEYCVDE--TSTPQ 221 +V+ + + +VRILR GGL +E ++ + V + D+ + P Sbjct: 231 VVDGLNPDGRVRILRLGGLSVEDIEACLIEAGLNLSDGKPILAGVYNQDYRDKELEAKPT 290 Query: 222 SPGMLKSHYAPRSQVRLRAIHVNP-------------REALIRFGNVPIKNIENAIISLN 268 +PGM HYAP ++V + + P E + + + + I L Sbjct: 291 TPGMKYKHYAPHAKVVILDPVLVPTSDSDQQESLRGVDELVSGICSEETDSSKGLRIGLM 350 Query: 269 LSKTGKLKE--------AAFNLFNYMKIADDS-GASSIAFSSIPNHGLGIAINNRLERAA 319 L L + +A LF ++ D+ I + GLG + RL +A+ Sbjct: 351 LIDDSPLHQSFIAQPAISAQRLFAALRYLDEELRVDIIYVERLSEVGLGATVMERLRKAS 410 Query: 320 A 320 Sbjct: 411 G 411 >gi|257888291|ref|ZP_05667944.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 1,141,733] gi|257824345|gb|EEV51277.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 1,141,733] Length = 311 Score = 299 bits (766), Expect = 4e-79, Method: Composition-based stats. Identities = 97/306 (31%), Positives = 154/306 (50%), Gaps = 20/306 (6%) Query: 33 YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGP 91 YGL ++ P +++++ +K RP NPLI HV+ VK++ P + + K FWPGP Sbjct: 2 YGLGANALLPNTVKKVFSVKGRPQDNPLIVHVASFEQVKEYVDNFHPETEKIVKNFWPGP 61 Query: 92 LTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITN 150 LTL+ + T + + T L TA FR+P T ++IE G PL PSAN SG+ S T Sbjct: 62 LTLIFKIKKDT-LPSVVTGGLSTAAFRMPDNKKTLEVIELSGVPLVGPSANTSGKPSPTT 120 Query: 151 VKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK-VRILRPGGLEIETLKRAISVE 209 H+ + +I IID G ++IG+EST++++ ILRPG + E ++ I Sbjct: 121 ADHVF-HDLQGKITGIIDDGATRIGVESTVLDLSDPTAMPMILRPGAVTKEQIEAVIESP 179 Query: 210 L---EYCVDETSTPQSPGMLKSHYAPRSQVRLR------AIHVNPREALIRFGNVPIKNI 260 + ++ V E TP++PGM HY+P ++V + + IR G + I Sbjct: 180 VAIDQHLVKENETPKAPGMKYKHYSPDTRVLMVREGDWSTAVQWAKNKKIRVGVIASPEI 239 Query: 261 ENAI----ISLNLSKTGKLKEAAFNLFNYMKIADD--SGASSIAFSSIPNHGLGIAINNR 314 + + ++ + ++ AA LF ++ D+ G I P GLG A NR Sbjct: 240 SDQVRTDTAAVYMYNDNSVEAAAKGLFAGLRGLDEPTLGLDLIFVQVYPETGLGNAYMNR 299 Query: 315 LERAAA 320 L++AA Sbjct: 300 LKKAAG 305 >gi|27363877|ref|NP_759405.1| Sua5 YciO YrdC YwlC family protein [Vibrio vulnificus CMCP6] gi|27359994|gb|AAO08932.1| Sua5 YciO YrdC YwlC family protein [Vibrio vulnificus CMCP6] Length = 328 Score = 299 bits (766), Expect = 4e-79, Method: Composition-based stats. Identities = 99/317 (31%), Positives = 157/317 (49%), Gaps = 8/317 (2%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 +S + + +A E L +G +AIPTETVYGLA D+ NP A+++++ K RPA +PLI H Sbjct: 14 LSALEQKDIDQAKEILASGELVAIPTETVYGLAADATNPDAVKKIFAAKGRPADHPLIVH 73 Query: 64 VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 + + + A + + LA+ +WPGP+TL+L + P+ T L+T R+P Sbjct: 74 IGRVEQLTDWAIDIPEEAYTLAQAYWPGPVTLLLKKAPH--VTPVVTGGLETIGIRMPAH 131 Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 L+++ G +A PSAN ++S T+ KH+++S + +I ++DGG GLESTIV Sbjct: 132 DVFATLLQSSGMAVAAPSANPYKKLSPTSAKHVMNS-LGGKIAAVLDGGDCAHGLESTIV 190 Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241 ++ EK RILR G + L +S E+ V PG + SHY P ++VRL Sbjct: 191 DLT-EKPFRILRTGPVTAAQLSATLSEEVSSPVSHNVAV--PGNVTSHYQPNTRVRLVQA 247 Query: 242 HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSS 301 + + + E + +L+ + AD G I Sbjct: 248 SDLALVGDKKIAYLHYTPFTAQENVEVRQMPSSVAEYSHDLYRTLDEADKWGCEEIWVER 307 Query: 302 IPNHGLGIAINNRLERA 318 P A+++RL RA Sbjct: 308 PPVTESWFAVHDRLNRA 324 >gi|295112222|emb|CBL28972.1| Sua5/YciO/YrdC/YwlC family protein [Synergistetes bacterium SGP1] Length = 327 Score = 299 bits (766), Expect = 5e-79, Method: Composition-based stats. Identities = 103/329 (31%), Positives = 159/329 (48%), Gaps = 16/329 (4%) Query: 1 MQIMSIT------DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR 54 M+ + I L +A E L +G +A PTETVYGL ++ NP A++ +Y K R Sbjct: 1 METLRIELDPWNPSGEILARAAEVLRSGGLVAFPTETVYGLGANALNPEAVKGIYRAKGR 60 Query: 55 PAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT 114 P+ NPLI H+S + + VD + L + FWPGPLTLVL + + + L T Sbjct: 61 PSDNPLILHLSRVEQAEPLVCVDERARRLMRAFWPGPLTLVL--RARDVVPMEARGGLST 118 Query: 115 ACFRVPCGFTK-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173 A R+P LI+ G PLA PSAN SG+ S T+ + + + I +I+DGG Sbjct: 119 AALRMPSHPVASALIDAVGFPLAAPSANVSGRPSPTDAETVWRD-LRGRIEMILDGGPVS 177 Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPR 233 +G+EST+++V E + +LRPGG+ E ++ + L D S+ +SPG HYAP Sbjct: 178 VGIESTVIDVSEELPL-LLRPGGMPAEEIEAFLGEPLRRP-DGRSSRRSPGTRYRHYAPT 235 Query: 234 SQVRLRAIHVNPREALIRFGNVPIKNIEN-AIISLNLS---KTGKLKEAAFNLFNYMKIA 289 VR+ A + + A+ + ++ A LF+ + Sbjct: 236 IPVRVWHPEAPFEMAEMVGMELERWGFMGLAVPPARFGRVLRFESVENYARGLFSGFRAL 295 Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERA 318 + G I P G+G+ + +R+ RA Sbjct: 296 EAEGLLGIVAEWPPAAGVGLGLRDRIRRA 324 >gi|189347477|ref|YP_001944006.1| Sua5/YciO/YrdC/YwlC family protein [Chlorobium limicola DSM 245] gi|189341624|gb|ACD91027.1| Sua5/YciO/YrdC/YwlC family protein [Chlorobium limicola DSM 245] Length = 319 Score = 299 bits (766), Expect = 5e-79, Method: Composition-based stats. Identities = 110/329 (33%), Positives = 163/329 (49%), Gaps = 17/329 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 MQ + +TDS +A L+ G +A PTETVYGL + AI R++ K RP NPL Sbjct: 1 MQTV-VTDSP--EEAARCLNEGGVVAFPTETVYGLGAAICHTEAIERIFAAKGRPGDNPL 57 Query: 61 ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I H++D + K AS V + L F+PGPLTLVL + + TA L T R Sbjct: 58 IVHIADPGDLMKVASHVSSDAKKLVLHFFPGPLTLVL--KKNSSVPDSVTAGLDTVGVRC 115 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P ++ P+A PSAN SG+ S T+ +L + +I I+ G S IGLES Sbjct: 116 PSNSDATAFLKRCRCPVAAPSANVSGRPSSTSWDAVL-HDLDGKIDCILKGAPSDIGLES 174 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAI-SVELEYCVDETSTPQSPGMLKSHYAPRSQVR 237 TIV+ E + +LR G + IE L+ + S+ + + P+SPG+ HYAP +++ Sbjct: 175 TIVDCSGETPL-LLRTGAVTIENLREVVPSIRTADSLRQHEIPKSPGLKYPHYAPEARIV 233 Query: 238 L----RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293 L I + + + + + E + + ++E A LF++ ++ D Sbjct: 234 LLGAGERIDADSEQRTSAYIGLSLPAAEQFALVKHCC---NIEEYARVLFDFFRLCDSRK 290 Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAAPR 322 S I P GLG A+ +RL RAAA R Sbjct: 291 ISFIYCELPPAEGLGRAVGDRLSRAAAGR 319 >gi|160903205|ref|YP_001568786.1| Sua5/YciO/YrdC/YwlC family protein [Petrotoga mobilis SJ95] gi|160360849|gb|ABX32463.1| Sua5/YciO/YrdC/YwlC family protein [Petrotoga mobilis SJ95] Length = 344 Score = 298 bits (765), Expect = 5e-79, Method: Composition-based stats. Identities = 98/334 (29%), Positives = 155/334 (46%), Gaps = 27/334 (8%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 + +++A + + + PTETVYGL + + A+R+++E K RP NPLI HVS+ Sbjct: 13 IEEEKIKEAAQAIKEDKTVVFPTETVYGLGANGLSENAVRKIFEAKGRPYDNPLILHVSN 72 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + ++ + L + PGP+T VL + + TA T R+P Sbjct: 73 VRSFLEYTYISYALLEKIERLLPGPITFVLKKREV--VPDIVTAGKDTLAIRMPAHPVAL 130 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 KLIE P+A PSAN SG+ S T +H+L + K + II GG + G+ESTI+++ Sbjct: 131 KLIEYAEVPIAAPSANISGKPSPTMSEHVLKDMLGK-VDYIIIGGKVEFGVESTIIDLTQ 189 Query: 186 EKKVRILRPGGLEIETLKRAIS----VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241 K ILRPG + E LK + Y E +SPGM HYAP + V L + Sbjct: 190 GKIPIILRPGPIPPEKLKEIFGDIIIPDFVYGKIEPDYIKSPGMKYRHYAPNTPVIL--V 247 Query: 242 HVNPREALIRFGNVPIKNIENAIISL----------------NLSKTGKLKEAAFNLFNY 285 + +++ +K+ N ++ + E A LF Sbjct: 248 EHDDANTMVKKVLEEVKSYNNPLVLCLKEHVGYYKDHNINFDTIGSESNYYEFAVKLFEM 307 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 ++ D+ ++ I + G+GIA+ NRL +AA Sbjct: 308 LRKYDEK-VDAMIIEGIEDKGIGIAVMNRLRKAA 340 >gi|320157253|ref|YP_004189632.1| yrdC/Sua5 family protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA [Vibrio vulnificus MO6-24/O] gi|319932565|gb|ADV87429.1| yrdC/Sua5 family protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA [Vibrio vulnificus MO6-24/O] Length = 320 Score = 298 bits (765), Expect = 5e-79, Method: Composition-based stats. Identities = 101/320 (31%), Positives = 161/320 (50%), Gaps = 14/320 (4%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 +S + + +A E L +G +AIPTETVYGLA D+ NP A+++++ K RPA +PLI H Sbjct: 6 LSALEQKDIDQAKEILASGELVAIPTETVYGLAADATNPDAVKKIFAAKGRPADHPLIVH 65 Query: 64 VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 + + + A + + LA+ +WPGP+TL+L + P+ T L+T R+P Sbjct: 66 IGRVEQLTDWAIDIPEEAYTLAQAYWPGPVTLLLKKAPH--VTPVVTGGLETIGIRMPAH 123 Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 L+++ G +A PSAN ++S T+ KH+++S + +I ++DGG GLESTIV Sbjct: 124 DVFATLLQSSGMAVAAPSANPYKKLSPTSAKHVMNS-LGGKIAAVLDGGDCAHGLESTIV 182 Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241 ++ EK RILR G + L + E+ V PG + SHY P ++VRL Sbjct: 183 DLT-EKPFRILRTGPVTAAQLSATLGEEVSSPVSHNVAV--PGNVTSHYQPNTRVRLVQA 239 Query: 242 HVNPREALIRFGNVPIKNIENAIISLNLSKT---GKLKEAAFNLFNYMKIADDSGASSIA 298 AL+ + + N+ + E + +L+ + AD G I Sbjct: 240 ---SDLALVGDKKIAYLHYTPFTAQENVEARQMPSSVAEYSHDLYRTLDEADKWGCEEIW 296 Query: 299 FSSIPNHGLGIAINNRLERA 318 P A+++RL RA Sbjct: 297 VERPPVTENWFAVHDRLNRA 316 >gi|328350842|emb|CCA37242.1| Uncharacterized protein ywlC [Pichia pastoris CBS 7435] Length = 436 Score = 298 bits (765), Expect = 5e-79, Method: Composition-based stats. Identities = 106/334 (31%), Positives = 161/334 (48%), Gaps = 28/334 (8%) Query: 12 LRKACEFLDAGL-PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 L +A L + I PTETVYGL S N +++ +Y K RP NPLI HV+ +S + Sbjct: 96 LDEASIILRSHKNCIGFPTETVYGLGASSLNDESVKSIYIAKNRPLDNPLITHVASLSQL 155 Query: 71 KKHA-----SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 + + + L L K FWPGPLT++L + T + L+TA T R+P Sbjct: 156 HRKILPPSTKIPDIYLPLIKKFWPGPLTILLPVEDDTTLSRLTTAGQDTFAVRIPNHPVA 215 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + LI PLA PSAN S + S T +H+ + IPLIIDGG S +GLES++VN Sbjct: 216 RALIAISDEPLAAPSANASTRPSPTLAEHVY-HDLQGRIPLIIDGGPSNVGLESSVVNGL 274 Query: 185 CEKKVRILRPGGLEIETLKRAIS-----VELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 + +LRPGG+ ++ ++ V + + + ++PGM HY+P ++V L Sbjct: 275 TNPPM-LLRPGGISLKQIQEVGHGWEDIVTAKKTANASEPVRTPGMKYKHYSPTAKVILF 333 Query: 240 AI--------------HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNY 285 + N + AL+ I A ++ + E A NLF Sbjct: 334 VKCGNGVKAVQEALSRYPNSKIALLTGSEFEIPETLQAQFAIVDHLGSSITEMAHNLFAK 393 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 ++ D + I +P+ G G+A+ NRL +AA Sbjct: 394 LRNLDKNDMDYIFIEGVPDAGEGLALMNRLSKAA 427 >gi|241889771|ref|ZP_04777069.1| SUA5 domain protein [Gemella haemolysans ATCC 10379] gi|241863393|gb|EER67777.1| SUA5 domain protein [Gemella haemolysans ATCC 10379] Length = 343 Score = 298 bits (765), Expect = 6e-79, Method: Composition-based stats. Identities = 97/342 (28%), Positives = 166/342 (48%), Gaps = 23/342 (6%) Query: 2 QIMSITDSNALRKACEFL----DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 +I++I+ S + + L G +AIPTETVYGL+ ++ + A+ ++YE K RP+ Sbjct: 4 EIINISKSESKEEIYSKLTEYYKRGKLVAIPTETVYGLSANAMDDEAVSKIYEAKGRPSD 63 Query: 58 NPLICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 NPLI H ++S + + L FWPGP+TL+L++ I TA L T Sbjct: 64 NPLIVHFYEMSQLDEIVDYSDENVKKLIDKFWPGPMTLILNVKENNGISKKVTAGLNTLA 123 Query: 117 FRVPCGFTKK-LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R+P T + +++ LA PSAN SG+ S T +H+ + +I +II+ S IG Sbjct: 124 VRMPSNVTARGILKETEILLAAPSANTSGKPSPTKFEHVY-HDLNGKIDVIIEDEQSDIG 182 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVE----LEYCVDETSTPQSPGMLKSHYA 231 LEST+++ + I RPG + E ++ + E + + P SPGM HY+ Sbjct: 183 LESTVIDCT-RYPLVIARPGDITKEDIESVLGEGSVKYNEEVLTQNVAPISPGMKYRHYS 241 Query: 232 PRSQVRLRAIHVNPREALIRF-----GNVPIKNIENAIISLNLS------KTGKLKEAAF 280 P +++ L +++ G + K +E+ + LN+S ++++ Sbjct: 242 PEAELVLFNDSFENLINILKDKNQKTGFITYKEMESRVDDLNVSIKYLAENEKSVEQSNK 301 Query: 281 NLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 NL+N ++ D+ I I A+ NRL +A + + Sbjct: 302 NLYNILREFDEEKVEEIFILPIEETKENKALLNRLNKAISKK 343 >gi|269792803|ref|YP_003317707.1| Sua5/YciO/YrdC/YwlC family protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100438|gb|ACZ19425.1| Sua5/YciO/YrdC/YwlC family protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 330 Score = 298 bits (765), Expect = 6e-79, Method: Composition-based stats. Identities = 117/322 (36%), Positives = 169/322 (52%), Gaps = 11/322 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ALR + + +G +A+PTETVYGL D+ NP A RR++++K RP NP+I HVS Sbjct: 13 EGALRLGADLILSGRLVAMPTETVYGLGGDATNPEAARRIFQVKGRPLDNPIIVHVSCSE 72 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 ++ + PL+ LA+ FWPGPLTLV+ + L T R P ++L Sbjct: 73 EAREVGRMTPLAEDLARAFWPGPLTLVVPSRGV--VPREFLGGLDTVGIRCPSHPVARRL 130 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 IE G P+ PSANRSG+ S T+ +L + IPLI+DGG ++GLEST+V+V + Sbjct: 131 IEISGVPIGAPSANRSGRPSPTDALTVL-EDLEGLIPLILDGGPCEVGLESTVVDVTGSE 189 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 V ILR GG+ + +A+ ++ E +SPG HYAP V L V + Sbjct: 190 PV-ILRQGGVTERMIVQAVG-RVQVAAGEELLRRSPGTRHRHYAPEVPVLLWDRSVPVQC 247 Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG- 306 R G V I + + + ++ L+E AF LF + + GAS I +P G Sbjct: 248 PPGRVGYVGISDPPFEV-AWSVRPR-DLREYAFLLFRTFREMERGGASVIVAE-LPERGE 304 Query: 307 -LGIAINNRLERAAAPRNQSQR 327 LG AI +RL RA+ R ++ Sbjct: 305 ALGDAIRDRLIRASGGRGLAKS 326 >gi|289523378|ref|ZP_06440232.1| Sua5/YciO/YrdC/YwlC family protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503070|gb|EFD24234.1| Sua5/YciO/YrdC/YwlC family protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 341 Score = 298 bits (764), Expect = 7e-79, Method: Composition-based stats. Identities = 109/320 (34%), Positives = 164/320 (51%), Gaps = 12/320 (3%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 + ++ A E + G +A PTETVYGL ++ + +A+R ++ K RP NPLI HV+++ Sbjct: 15 EREIIKIAAEAIVKGKLVAFPTETVYGLGANALDESAVRGIFSAKGRPCDNPLIVHVANV 74 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 +K A +L L + FWPGPLTLV+ + + + L+T R+P Sbjct: 75 ESAEKIAHTTSKALRLMERFWPGPLTLVM--KAKDIVPKATRGGLETVAVRMPAHPVALA 132 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LIE G P+A PSAN SG+ S T+ ++ + + +I+D G + +G+EST+++V E Sbjct: 133 LIEKSGVPIAAPSANTSGRPSPTDA-GVVYDDLGCCVDVILDTGPTDVGVESTVIDVTQE 191 Query: 187 KKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL-RA 240 K V +LRPGGL +E ++ + EL E +SPG HYAPR +V L R Sbjct: 192 K-VVLLRPGGLPVEAIEEFGEEVMLPDELGAGRAEDVKRKSPGTRYRHYAPRCRVVLWRE 250 Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300 P E G + IK IS + L+ A LF M+ + G I Sbjct: 251 GDDWPLERDEAVGYMGIKRPPL-DISEKVILFDSLEHYARGLFMAMRYLEKKGVKVIVAD 309 Query: 301 SIPNHGLGIAINNRLERAAA 320 GLG+AI +RL RA++ Sbjct: 310 YPVKEGLGLAIRDRLYRASS 329 >gi|295428703|ref|ZP_06821329.1| translation factor [Staphylococcus aureus subsp. aureus EMRSA16] gi|295127373|gb|EFG57013.1| translation factor [Staphylococcus aureus subsp. aureus EMRSA16] Length = 365 Score = 298 bits (764), Expect = 7e-79, Method: Composition-based stats. Identities = 87/324 (26%), Positives = 150/324 (46%), Gaps = 18/324 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + + G I +PTETVYGLA ++ + A+ ++YE K RP+ NPLI H+ +K Sbjct: 38 INEIKDIVLNGGLIGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKGQLK 97 Query: 72 KH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIE 129 ++DP L + FWPGP++ +L L + + L + R+P ++L++ Sbjct: 98 DFTYTLDPRVEKLMQAFWPGPISFILPLKPGY-LCRKVSGGLSSVAVRMPSHSVGRQLLQ 156 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 PLA PSAN SG+ S T H+ + I I+ S+ GLEST+++ Sbjct: 157 IINEPLAAPSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDCTS-FPY 214 Query: 190 RILRPGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRL------RAIH 242 +I RPG + + + + + ++T P +PGM HY+P + + + + + Sbjct: 215 KIARPGSITAAMITEILPNSIAHADYNDTEQPIAPGMKYKHYSPNTPLTIITDIESKIGN 274 Query: 243 VNPREALIRF----GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSI 297 + I F V E I L +K+A+ NL++ + D+ S+ Sbjct: 275 DGKDWSSIAFIVPSNKVAFIPSEAQFIQL-CQDDNDVKQASHNLYDVLHSLDENENISAA 333 Query: 298 AFSSIPNHGLGIAINNRLERAAAP 321 + AI NR+ +AA Sbjct: 334 YIYGFELNDNTEAIMNRMLKAAGN 357 >gi|317033381|ref|XP_001395551.2| protein SUA5 [Aspergillus niger CBS 513.88] Length = 434 Score = 298 bits (764), Expect = 7e-79, Method: Composition-based stats. Identities = 104/393 (26%), Positives = 169/393 (43%), Gaps = 82/393 (20%) Query: 8 DSNALRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 ++ A+ A + L + +P+A PTETVYGL D+ A++ +Y+ K+RP+ NPLI HV Sbjct: 39 EAAAIEDAAQLLRTSDIPVAFPTETVYGLGADATRSDAVQGIYKAKQRPSDNPLIIHVDS 98 Query: 67 ISMVKKHAS----------------VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA 110 + M+++ + + P+ + FWPGPLT++L S + + P T+ Sbjct: 99 LGMLERLLNPTQESPSRRTSTAKNAIPPIYDSVISRFWPGPLTILLPNPSGSPLAPEVTS 158 Query: 111 NLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169 L T R+P + LI PLA PSAN S + S T +H+ + I LI+DG Sbjct: 159 KLTTFGVRMPSSPLARLLIHVTDRPLAAPSANASTKPSPTAAEHVF-HDLEGRIELILDG 217 Query: 170 GISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL------EYCVDETSTPQSP 223 G +G+EST+V+ + ILRPGG+ IE L+ E + +D P++P Sbjct: 218 GPCGVGVESTVVDGLSDPPA-ILRPGGIGIEELRTCAGWENVQVGYHDGTLDVKEIPRAP 276 Query: 224 GMLKSHYAPRSQVRL--------------RAIHVNPREALIRFGNVPIKNIENAII---- 265 GM HY+P+++V L R + G V ++ + + Sbjct: 277 GMKYRHYSPKARVVLFEAGSDEEAVTRHIRKDLEDSAIGAHMIGVVRTQHWKRGLGLLSA 336 Query: 266 ------------------------------------SLNLSKTGKLKEAAFNLFNYMKIA 289 + + +K A LF+ ++ Sbjct: 337 NEMQKSLKRIPSLVDELVGFSVPVSGQVNGSTATKETFDCHLGTDVKSIAQGLFSALRAM 396 Query: 290 DDSGASSIAFSSIPNH--GLGIAINNRLERAAA 320 D+ I +P+H L A+ NRL +AA Sbjct: 397 DEMEVDVIYVEGVPDHQGDLAAAVMNRLRKAAG 429 >gi|255718989|ref|XP_002555775.1| KLTH0G17116p [Lachancea thermotolerans] gi|238937159|emb|CAR25338.1| KLTH0G17116p [Lachancea thermotolerans] Length = 401 Score = 298 bits (764), Expect = 7e-79, Method: Composition-based stats. Identities = 104/356 (29%), Positives = 158/356 (44%), Gaps = 43/356 (12%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 T+ N L A D + PTETVYGL S N ++ +Y+ K RP+ NPLI H+S Sbjct: 43 TEQNLLEAARTIRDTDDTVGFPTETVYGLGGSSLNDKSVLNIYKAKNRPSDNPLISHISS 102 Query: 67 ISMVKK-----------HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115 I + + ++ + L + WPGPLT++L + + + L+TA+ T Sbjct: 103 IDQLNRKIYGQESCSDILQNIPQIYRSLTEKLWPGPLTILLPVPQQSTLSKLTTADQPTF 162 Query: 116 CFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174 R+P + LI P+A PSAN+S + S T H+ + IPLI+DGG + Sbjct: 163 AVRIPSNPIARALIALSDTPIAAPSANQSTRPSPTLASHVF-HDLKGRIPLILDGGACSV 221 Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRA-------ISVELEYCVDETSTPQSPGMLK 227 G+EST+V+ + +LRPGG E ++ VE + V E ++PGM Sbjct: 222 GVESTVVDGLVSPPL-LLRPGGFTWEQIRSMGGPQWVDCKVENKKTVSEGEKVRTPGMKY 280 Query: 228 SHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKL------------ 275 HY+P+++V L A R NV ++A + L Sbjct: 281 RHYSPQAKVILFAPQEGSAPLEKRLENVKSVITDHARDVRGFAVLSSLTFPDNLLDDPHG 340 Query: 276 ---------KEAAFNLFNYMKIADDS-GASSIAFSSIPNHGLGIAINNRLERAAAP 321 E NLF Y++ D+ I I G G+A+ NRL +AA+ Sbjct: 341 IYRCLGSSNTEIQANLFAYLRQVDEMPNIDIIFVEGIDEEGEGLAVMNRLRKAASN 396 >gi|330719387|ref|ZP_08313987.1| putative translation factor [Leuconostoc fallax KCTC 3537] Length = 337 Score = 298 bits (764), Expect = 8e-79, Method: Composition-based stats. Identities = 102/332 (30%), Positives = 158/332 (47%), Gaps = 16/332 (4%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 T + A + L G +A PTETVYGL + + A+R+++ K RP+ NPLI V+D Sbjct: 8 TSEQDILFAGKLLSQGEVVAFPTETVYGLGAVATDEVAVRKVFTAKGRPSDNPLIVTVAD 67 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 +MV++ A + +S L FWPG LT++L + + T L T FR+P + Sbjct: 68 KAMVQQFAVENDMSQKLMAAFWPGSLTIILPMRAQA-FSMTVTGGLNTVAFRLPDNEVAR 126 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +I P+ PSAN SG+ S T +H+ + +I I+D G + +G+EST+++V Sbjct: 127 AVIRAAKAPIVGPSANTSGKPSPTTAQHVW-HDMAGKIAAIVDDGPTTVGVESTVIDVSG 185 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETS-----TPQSPGMLKSHYAPRSQV---- 236 ILRPG + E L ++ + S TP++PGM HYAP V Sbjct: 186 NVP-TILRPGAITQEQLVAVLAQPVHDATTTESVASDVTPKAPGMKYRHYAPDKHVVMFD 244 Query: 237 RLRAIHVNPREALIRFGNVPIKNIENAIISLN--LSKTGKLKEAAFNLFNYMKIADDS-G 293 L A+ + + + ++ I S L+ A LF+ ++ DD Sbjct: 245 ELDAVDLAQKLQDNDVVMAQDRILQAMAIKSQQAWSLGDSLESATEQLFSGLRFYDDQPK 304 Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325 +I + GLG A NNRL +AA + S Sbjct: 305 VGTIYVQKMIPVGLGKAYNNRLAKAAGNQEFS 336 >gi|258512736|ref|YP_003186170.1| Sua5/YciO/YrdC/YwlC family protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479462|gb|ACV59781.1| Sua5/YciO/YrdC/YwlC family protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 360 Score = 298 bits (764), Expect = 8e-79, Method: Composition-based stats. Identities = 104/341 (30%), Positives = 166/341 (48%), Gaps = 34/341 (9%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 LR+ + L G +A PTETVYGL ++ A+RR++ K+RP NPLI H++D + ++ Sbjct: 19 LREPAQSLRRGGLVAFPTETVYGLGANALEEEAVRRIFAAKERPRDNPLIVHIADDAKLR 78 Query: 72 KHASVD----PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + ++ L + FWPGPLTL+L + + P R+P + Sbjct: 79 DVIDENQPLHEDAVRLMRAFWPGPLTLLLP--AGARLAPSVHPGQPLVGVRMPDHPVARA 136 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LI G P+A PSANRSG+ S T ++ + + I ++DGG IG+EST++ + Sbjct: 137 LIAEAGVPVAAPSANRSGRPSPTTPDDVV-ADLDGRIDWLVDGGPCPIGVESTVL-LLEP 194 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCV---DETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 RILRPGG+ E + I + Y D S P +PGM HYAP ++V + Sbjct: 195 DCARILRPGGVTQEMIASVIDRPVLYAADVFDVASAPLAPGMKYRHYAPNARVHVWWGEP 254 Query: 244 NP-REALIRFGNVPIKNIENAIISL--------------------NLSKTGKLKEAAFNL 282 EA+ F +++ + + +L L +E A +L Sbjct: 255 EAIDEAMRAFLLEAVQDDDLMVPALIAPDDFVRRFGWALSDERQAVLPADTYAEELARHL 314 Query: 283 FNYMKIADDSGASSIAFSSI-PNHGLGIAINNRLERAAAPR 322 + ++ D +GA+ + + P HG+G A+ NRL +A+A R Sbjct: 315 YRLLRAFDGAGATDVLVHGVDPTHGVGAAVMNRLYKASAGR 355 >gi|45190306|ref|NP_984560.1| AEL300Cp [Ashbya gossypii ATCC 10895] gi|44983202|gb|AAS52384.1| AEL300Cp [Ashbya gossypii ATCC 10895] Length = 418 Score = 298 bits (763), Expect = 9e-79, Method: Composition-based stats. Identities = 102/371 (27%), Positives = 165/371 (44%), Gaps = 53/371 (14%) Query: 2 QIMSITDSNALRKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 +I L +A + G +A PTETVYGL S N ++R +Y+ K RP+ NPL Sbjct: 45 RISDPETEKHLLEAARLIRDDGETVAFPTETVYGLGGSSLNDASVRNIYKAKNRPSDNPL 104 Query: 61 ICHVSDISMVKK-----------HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLST 109 I HVS I+ + + ++ + L + WPGPLT++L + T + L+T Sbjct: 105 ISHVSSIAQLNRRIYQQDREGDVLRNIPVVYHELVRQLWPGPLTILLPINEETALSVLTT 164 Query: 110 ANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 A T R+P + LI P+A PSAN S + S T +H+ + +IPLI+D Sbjct: 165 AGQPTFAVRIPADPVARALIALSDTPIAAPSANVSTRPSPTAAEHVY-HDLKGKIPLILD 223 Query: 169 GGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYC-------VDETSTPQ 221 GG ++G+EST+++ + +LRPGG E + + +C V + Sbjct: 224 GGSCRVGVESTVIDGLVNPPM-LLRPGGFTYEEIIELGGEQWSHCKVENRMTVGSGEKVR 282 Query: 222 SPGMLKSHYAPRSQV-------------------------RLRAIHVNPREAL-----IR 251 +PGM HY+PR+ + + + R+ + I Sbjct: 283 TPGMKYKHYSPRASTVAFAPINDDLPTSERMKIVTSEIMKYMTSHGTDKRQKVGLLTSIM 342 Query: 252 FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG-ASSIAFSSIPNHGLGIA 310 F N +++I + + + S KE NLF ++ D+ I I + G+A Sbjct: 343 FPNNLLESITDEVDVVVYSLGSSGKEVQSNLFAMLRRLDEEDEVDLIFVEGISDRNEGLA 402 Query: 311 INNRLERAAAP 321 + NRL +AA Sbjct: 403 VMNRLRKAAGG 413 >gi|313895787|ref|ZP_07829341.1| Sua5/YciO/YrdC/YwlC family protein [Selenomonas sp. oral taxon 137 str. F0430] gi|312975212|gb|EFR40673.1| Sua5/YciO/YrdC/YwlC family protein [Selenomonas sp. oral taxon 137 str. F0430] Length = 355 Score = 298 bits (763), Expect = 9e-79, Method: Composition-based stats. Identities = 101/345 (29%), Positives = 158/345 (45%), Gaps = 28/345 (8%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +I+S + A + G +A PTETVYGL + A R+Y K RP+ NPLI Sbjct: 4 KIISPVREADIAYAARMIRDGALVAFPTETVYGLGASGLDAAACARIYAAKGRPSDNPLI 63 Query: 62 CHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 H++D+SM A + P + HL F PGP+T++L + I + T L T R P Sbjct: 64 LHIADLSMAADAARTIPPAAAHLLTAFAPGPITVILPKAAH--IPDIVTGGLSTVGVRCP 121 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + LI G P+A PSAN SG+ S T + + + IP I+DGG + G+EST Sbjct: 122 DHDIARALIRAAGVPVAAPSANTSGRPSPTTAVMV-ADDLAGRIPCILDGGACRWGVEST 180 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAI---SVELEYCVDETST-PQSPGMLKSHYAPRSQ 235 IV+ + V +LRPG + E + + V ++ + P++PGM HYAPR+ Sbjct: 181 IVDCTEDGVVTVLRPGAVTREMIAAELPHMEVRVDPALTAADAVPRAPGMKYRHYAPRAP 240 Query: 236 VRLRAIHVNPREALIRF-------------------GNVPIKNIENAIISLNLSKTGKLK 276 + + + A +R + I + G Sbjct: 241 LAVYTGAPDAVAAALRAEILRQRAEGTQIGLIAFRETCAALTGIISPAYVYACGVRGDDA 300 Query: 277 EAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 A L++ ++ D++ A ++ HGLG+A+ NRL +A+ Sbjct: 301 AYANCLYDALRRFDNTDAGALLAEGTDEHGLGLAVMNRLRKASGG 345 >gi|326402400|ref|YP_004282481.1| hypothetical protein ACMV_02520 [Acidiphilium multivorum AIU301] gi|325049261|dbj|BAJ79599.1| hypothetical protein ACMV_02520 [Acidiphilium multivorum AIU301] Length = 322 Score = 298 bits (763), Expect = 9e-79, Method: Composition-based stats. Identities = 126/312 (40%), Positives = 172/312 (55%), Gaps = 11/312 (3%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 E L AG +A TETVYGL D+ N +A+ +YE K RP NPLI H D +HA+ Sbjct: 17 ELLRAGELVAFATETVYGLGADATNASAVAAIYEAKGRPRFNPLISHFPDADAAFRHAAA 76 Query: 77 DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPL 135 D + A+ FWPGPLTLVL +DI L+TA L + RVP + L+ G P+ Sbjct: 77 DARAREAAQAFWPGPLTLVLPRRDESDIAALATAGLSSVAVRVPGHGIARALLAATGRPV 136 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 A PSANRSG++S T H++ + + I I++ G ++GLES IV++ V +LRPG Sbjct: 137 AAPSANRSGRLSPTRPAHVI-AGLEGRIAAILESGACEVGLESAIVDLTGATPV-LLRPG 194 Query: 196 GLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNV 255 G+ E L+ + + + + ++PGML SHYAP +RL A EA + FG Sbjct: 195 GISREALEAVLG-PVSIASEMGAAVKAPGMLASHYAPVLPMRLGATAPEDGEAWLGFGIE 253 Query: 256 PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD----SGASSIAFSSIPNHGLGIAI 311 P +S NLS G L EAA LF+ + D + IA + +P GLG AI Sbjct: 254 PPTLPP---VSRNLSPAGDLVEAAARLFDSLHELDAAAGLARLRRIAVARVPERGLGAAI 310 Query: 312 NNRLERAAAPRN 323 N+RL RAAAPR+ Sbjct: 311 NDRLARAAAPRS 322 >gi|257896819|ref|ZP_05676472.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium Com12] gi|257833384|gb|EEV59805.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium Com12] Length = 311 Score = 298 bits (763), Expect = 9e-79, Method: Composition-based stats. Identities = 97/306 (31%), Positives = 153/306 (50%), Gaps = 20/306 (6%) Query: 33 YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGP 91 YGL ++ P +++++ +K RP NPLI HV+ VK++ P + + K FWPGP Sbjct: 2 YGLGANALLPNTVKKVFSVKGRPQDNPLIVHVASFEQVKEYVDNFHPETEKIVKNFWPGP 61 Query: 92 LTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITN 150 LTL+ + T + + T L TA FR+P T ++IE G PL PSAN SG+ S T Sbjct: 62 LTLIFKIKKDT-LPSVVTGGLSTAAFRMPDNKKTLEVIELSGVPLVGPSANTSGKPSPTT 120 Query: 151 VKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK-VRILRPGGLEIETLKRAISVE 209 H+ + +I IID G ++IG+EST++++ ILRPG + E ++ I Sbjct: 121 ADHVF-HDLQGKITGIIDDGATRIGVESTVLDLSDPTAMPMILRPGAVTKEQIEAVIESP 179 Query: 210 L---EYCVDETSTPQSPGMLKSHYAPRSQVRLR------AIHVNPREALIRFGNVPIKNI 260 + ++ V E TP++PGM HY+P + V + + IR G + I Sbjct: 180 VAIDQHLVKENETPKAPGMKYKHYSPDTCVLMVREGDWSTAVQWAKNKKIRVGVIASPEI 239 Query: 261 ENAI----ISLNLSKTGKLKEAAFNLFNYMKIADD--SGASSIAFSSIPNHGLGIAINNR 314 + + ++ + ++ AA LF ++ D+ G I P GLG A NR Sbjct: 240 SDQVRTDTAAVYMYNDNSVEAAAKGLFAGLRGLDEPTLGLDLIFVQVYPETGLGNAYMNR 299 Query: 315 LERAAA 320 L++AA Sbjct: 300 LKKAAG 305 >gi|160935044|ref|ZP_02082430.1| hypothetical protein CLOLEP_03920 [Clostridium leptum DSM 753] gi|156866497|gb|EDO59869.1| hypothetical protein CLOLEP_03920 [Clostridium leptum DSM 753] Length = 335 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 100/329 (30%), Positives = 158/329 (48%), Gaps = 20/329 (6%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D +R+A E + G + IPTETVYGLA ++ N + R+++ K RP+ NPLI H++ Sbjct: 5 DDKGIRRAAEIIQQGGLVGIPTETVYGLAGNALNGSVSRKIFAAKGRPSDNPLIVHIAAE 64 Query: 68 SMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK- 125 + P + LA +WPGPLT+VL + + ++ L T R+P Sbjct: 65 EEARPLVKEFPEPARKLAAAYWPGPLTMVLP--KSELVPMETSGGLSTVAVRLPAHPVAN 122 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +LI G PLA PS N SG+ S T +H+L + I I+DGG +G+EST++ + Sbjct: 123 RLIRACGCPLAAPSGNLSGRPSPTTARHML-HDMDGRIDAILDGGPCGVGVESTVLAL-A 180 Query: 186 EKKVRILRPGGLEIETLKRAIS-----VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 E+K R+LRPGG+ +E L+R + + + + + + SPGM HYAP+++V L Sbjct: 181 EQKPRLLRPGGVTLEMLQRVVGAVTVDPAVLHKLADGAQAASPGMKYKHYAPKAKVILVK 240 Query: 241 IHVNPREALIRFGNVP--------IKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD- 291 + P + S+ A LF+ ++ D+ Sbjct: 241 GTAERYREFVNSKKAPGVGALCFDEDQHLLKVPSVPYGSGNDSAAQARELFDALRELDER 300 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320 + G+G+A+ NRL RAA Sbjct: 301 QEIQLVYARCPEPEGVGMAVYNRLIRAAG 329 >gi|19075544|ref|NP_588044.1| SUA5/yciO/yrdC family protein Sua5 (predicted) [Schizosaccharomyces pombe 972h-] gi|74582918|sp|O94530|SUA5_SCHPO RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein sua5; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein sua5 gi|4164422|emb|CAA22839.1| SUA5/yciO/yrdC family protein Sua5 (predicted) [Schizosaccharomyces pombe] Length = 408 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 111/363 (30%), Positives = 168/363 (46%), Gaps = 54/363 (14%) Query: 10 NALRKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +AL A L P+A PTETVYGL D+R A+ +Y+ K RPA NPLI HV+ + Sbjct: 40 SALENAANILRNTDYPVAFPTETVYGLGADARRTEAVLSIYKAKNRPADNPLIVHVASLD 99 Query: 69 MVKKHA--------------------SVDPLSLHLAKLFWPGPLTLVLDLL--STTDIHP 106 +++ + + L L K FWPGPL+++L ++ + + P Sbjct: 100 QLRRLLLSAYPKAKSEVKNQAHDSEEIIPKVYLPLIKKFWPGPLSILLPVVDEANPPVSP 159 Query: 107 LSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPL 165 + TA KT R+P LI PLA PSAN S + S T KH+ + + +IPL Sbjct: 160 IVTAGQKTFAVRMPQHPVALALISISDSPLAAPSANASTRPSPTLAKHVYND-LQGKIPL 218 Query: 166 IIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS--------VELEYCVDET 217 I+DGG +G+EST+VN C+ V ILRPGG+ +E ++ + V + ++ Sbjct: 219 ILDGGACGVGVESTVVNGLCDPPV-ILRPGGISLEEIQSSGGAWERTKVFVAKKSDMETD 277 Query: 218 STPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNI--ENAIISLNLSKTGKL 275 PQ+PGM HY+P ++V L + + + + I E I + SK Sbjct: 278 FIPQTPGMKYRHYSPTAKVLLFVNYTESDAYGVFEKYLSEQGITKEKQKIGVLCSKRWNE 337 Query: 276 K------------------EAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLER 317 + E NLF ++ D G + + G+AI NRL + Sbjct: 338 ESFPSHCPFVFLHMGRDGHEITKNLFAQLRDLDLQGVDFVLVEGVSEENEGLAIMNRLGK 397 Query: 318 AAA 320 AA+ Sbjct: 398 AAS 400 >gi|257899727|ref|ZP_05679380.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium Com15] gi|257837639|gb|EEV62713.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium Com15] Length = 311 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 96/306 (31%), Positives = 154/306 (50%), Gaps = 20/306 (6%) Query: 33 YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGP 91 YGL ++ P +++++ +K RP NPLI HV+ VK++ P + + K FWPGP Sbjct: 2 YGLGANALLPNTVKKVFSVKGRPQDNPLIVHVASFEQVKEYVDNFHPEAEKIVKNFWPGP 61 Query: 92 LTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITN 150 LTL+ + T + + T L TA FR+P T ++IE G PL PSAN SG+ S T Sbjct: 62 LTLIFKIKKDT-LPSVVTGGLSTAAFRMPDNKKTLEVIELSGVPLVGPSANTSGKPSPTT 120 Query: 151 VKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK-VRILRPGGLEIETLKRAISVE 209 H+ + +I II+ G ++IG+EST++++ ILRPG + E ++ I Sbjct: 121 ADHVF-HDLQGKITGIIEDGATRIGVESTVLDLSNPTAMPMILRPGAVTKEQIEAVIGSP 179 Query: 210 L---EYCVDETSTPQSPGMLKSHYAPRSQVRLRAI------HVNPREALIRFGNVPIKNI 260 + ++ V E TP++PGM HY+P ++V + + IR G + I Sbjct: 180 VAVDQHLVKENETPKAPGMKYKHYSPDTRVLMVRDGDWSIAVQWAKNKKIRAGVIASPEI 239 Query: 261 ENAI----ISLNLSKTGKLKEAAFNLFNYMKIADD--SGASSIAFSSIPNHGLGIAINNR 314 + + ++ + ++ AA LF ++ D+ G I P GLG A NR Sbjct: 240 ADQVRTDTAAVYMYNDNSVEAAAKGLFAGLRGLDEPTLGLDLIFVQVYPETGLGNAYMNR 299 Query: 315 LERAAA 320 L++AA Sbjct: 300 LKKAAG 305 >gi|329729335|gb|EGG65743.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus 21193] Length = 348 Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 88/324 (27%), Positives = 151/324 (46%), Gaps = 18/324 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + + G I +PTETVYGLA ++ + A+ ++YE K RP+ NPLI H+ +K Sbjct: 21 INEIKDIVLNGGLIGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKGQLK 80 Query: 72 KH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIE 129 ++DP L + FWPGP++ +L L + + L + R+P ++L++ Sbjct: 81 DFTYTLDPRVEKLMQAFWPGPISFILPLKPGY-LCRKVSGGLSSVAVRMPSHSVGRQLLQ 139 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 PLA PSAN SG+ S T H+ + I I+ S+ GLEST+++ Sbjct: 140 IINEPLAAPSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDCTS-FPY 197 Query: 190 RILRPGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRL------RAIH 242 +I RPG + + + + Y ++T P +PGM HY+P + + + + + Sbjct: 198 KIARPGSITAAMITEILPNSIAYADYNDTEQPIAPGMKYKHYSPNTPLTIITDIESKIGN 257 Query: 243 VNPREALIRF----GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSI 297 + I F V E I L +K+A+ NL++ + D+ S+ Sbjct: 258 DGKDWSSIAFIVPSNKVAFIPSEAQFIQL-CQDDNDVKQASHNLYDVLHSLDENENISAA 316 Query: 298 AFSSIPNHGLGIAINNRLERAAAP 321 + AI NR+ +AA+ Sbjct: 317 YIYGFELNDNTEAIMNRMLKAASN 340 >gi|114328864|ref|YP_746021.1| sua5/YciO/YrdC/YwlC family protein [Granulibacter bethesdensis CGDNIH1] gi|114317038|gb|ABI63098.1| sua5/YciO/YrdC/YwlC family protein [Granulibacter bethesdensis CGDNIH1] Length = 341 Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 120/323 (37%), Positives = 169/323 (52%), Gaps = 18/323 (5%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 A L G +A PTETV+GL D+ A+ R++ K RP NPLICH+ D Sbjct: 16 EAAGRLLRQGALVAFPTETVWGLGADATCADAVARIFAAKDRPRFNPLICHLPDAESAFT 75 Query: 73 HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETY 131 H D + LA FWPGPLT+VL + + L++A +T RVP ++++ Sbjct: 76 HGIADDRARALAAAFWPGPLTMVLRRNPDSPVSLLASAGQETLALRVPALDLARRMLVAA 135 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 G P+A PSANRSG++S T+ H++ + I ++DG +G+EST++++ + + Sbjct: 136 GCPVAAPSANRSGRVSPTSRDHVM-EGLAGRIDAVLDGPDCMVGVESTVIDLSGPSAI-L 193 Query: 192 LRPGGLEIETLKRAISVELEYCVDETST-------PQSPGMLKSHYAPRSQVRLRAIHVN 244 LRPGG+ E L+ I E SPGM++SHYAP VRL A+ V Sbjct: 194 LRPGGVSREALRDVIGDVTVLSAPEGGADGSREQVLLSPGMMRSHYAPSLTVRLDAVSVA 253 Query: 245 PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD----DSGASSIAFS 300 EAL+ FG + A + NLS G + EAA LF+ ++ D G IA Sbjct: 254 ADEALLAFG----PPLPGAGLVWNLSAAGDVIEAATRLFSGLRTLDSKGRQRGLRGIACM 309 Query: 301 SIPNHGLGIAINNRLERAAAPRN 323 +P GLG AIN+RL RAAAPR Sbjct: 310 RVPMQGLGEAINDRLARAAAPRE 332 >gi|253731046|ref|ZP_04865211.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|257426255|ref|ZP_05602670.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus 55/2053] gi|257428913|ref|ZP_05605307.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus 65-1322] gi|257431522|ref|ZP_05607895.1| translation factor [Staphylococcus aureus subsp. aureus 68-397] gi|257434231|ref|ZP_05610581.1| translation factor [Staphylococcus aureus subsp. aureus E1410] gi|257437144|ref|ZP_05613184.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus M876] gi|282904785|ref|ZP_06312659.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus C160] gi|282906460|ref|ZP_06314311.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus Btn1260] gi|282909429|ref|ZP_06317244.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911681|ref|ZP_06319480.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus WBG10049] gi|282914965|ref|ZP_06322745.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus M899] gi|282920294|ref|ZP_06328018.1| translation factor [Staphylococcus aureus subsp. aureus C427] gi|282925505|ref|ZP_06333159.1| translation factor [Staphylococcus aureus subsp. aureus C101] gi|283958896|ref|ZP_06376341.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus A017934/97] gi|293509033|ref|ZP_06667820.1| translation factor [Staphylococcus aureus subsp. aureus 58-424] gi|293510948|ref|ZP_06669647.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus M809] gi|293547550|ref|ZP_06672225.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus M1015] gi|297589817|ref|ZP_06948457.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus MN8] gi|253725234|gb|EES93963.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|257270960|gb|EEV03133.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus 55/2053] gi|257274255|gb|EEV05772.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus 65-1322] gi|257277763|gb|EEV08433.1| translation factor [Staphylococcus aureus subsp. aureus 68-397] gi|257280870|gb|EEV11015.1| translation factor [Staphylococcus aureus subsp. aureus E1410] gi|257283537|gb|EEV13664.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus M876] gi|282312906|gb|EFB43307.1| translation factor [Staphylococcus aureus subsp. aureus C101] gi|282316154|gb|EFB46535.1| translation factor [Staphylococcus aureus subsp. aureus C427] gi|282321168|gb|EFB51499.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus M899] gi|282324446|gb|EFB54759.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus WBG10049] gi|282326699|gb|EFB56997.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330410|gb|EFB59928.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus Btn1260] gi|282594818|gb|EFB99795.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus C160] gi|283789614|gb|EFC28437.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus A017934/97] gi|290919670|gb|EFD96743.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus M1015] gi|291094737|gb|EFE25009.1| translation factor [Staphylococcus aureus subsp. aureus 58-424] gi|291466233|gb|EFF08760.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus M809] gi|297576945|gb|EFH95659.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus MN8] gi|312437466|gb|ADQ76537.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus TCH60] Length = 357 Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 87/324 (26%), Positives = 150/324 (46%), Gaps = 18/324 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + + G I +PTETVYGLA ++ + A+ ++YE K RP+ NPLI H+ +K Sbjct: 30 INEIKDIVLNGGLIGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKGQLK 89 Query: 72 KH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIE 129 ++DP L + FWPGP++ +L L + + L + R+P ++L++ Sbjct: 90 DFTYTLDPRVEKLMQAFWPGPISFILPLKPGY-LCRKVSGGLSSVAVRMPSHSVGRQLLQ 148 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 PLA PSAN SG+ S T H+ + I I+ S+ GLEST+++ Sbjct: 149 IINEPLAAPSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDCTS-FPY 206 Query: 190 RILRPGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRL------RAIH 242 +I RPG + + + + + ++T P +PGM HY+P + + + + + Sbjct: 207 KIARPGSITAAMITEILPNSIAHADYNDTEQPIAPGMKYKHYSPNTPLTIITDIESKIGN 266 Query: 243 VNPREALIRF----GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSI 297 + I F V E I L +K+A+ NL++ + D+ S+ Sbjct: 267 DGKDWSSIAFIVPSNKVAFIPSEAQFIQL-CQDDNDVKQASHNLYDVLHSLDENENISAA 325 Query: 298 AFSSIPNHGLGIAINNRLERAAAP 321 + AI NR+ +AA Sbjct: 326 YIYGFELNDNTEAIMNRMLKAAGN 349 >gi|170090858|ref|XP_001876651.1| predicted protein [Laccaria bicolor S238N-H82] gi|164648144|gb|EDR12387.1| predicted protein [Laccaria bicolor S238N-H82] Length = 380 Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 109/356 (30%), Positives = 165/356 (46%), Gaps = 40/356 (11%) Query: 3 IMSITDSNALRKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 I S S AL A L + PTETVYGL +++ A +++ K RP NPLI Sbjct: 24 ISSPDTSRALDIAAHHLRDLSQTVVFPTETVYGLGASAQSTQATSKIFSTKGRPPDNPLI 83 Query: 62 CHVSDISMVKKH----ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 HVS ++M++ ++ L K FWPGPLTL+ + I + TAN + Sbjct: 84 VHVSSLTMLRTLLPLGYNLSRAYEVLIKHFWPGPLTLLFPRNADI-IPTIVTANQPSVAI 142 Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P + LI + PLA PSAN SG+ S T V+H+L + ++P+I+DGG IGL Sbjct: 143 RMPSHPVARALIASSNLPLAAPSANSSGKPSPTRVEHVLRD-LDGKVPIILDGGACDIGL 201 Query: 177 ESTIVN-VQCEKKVRILRPGGLEIETLKRAISVELEYCVDETS---TPQSPGMLKSHYAP 232 EST+V+ +Q + +RILRPGG+ +E ++R + E+ C P +PGM HY+P Sbjct: 202 ESTVVDGLQADGNIRILRPGGITVEEIERVLRQEMHDCAQIPKVLNAPTTPGMKYRHYSP 261 Query: 233 RSQVRLRAIHVNPRE-----ALIRFGNVPIKNIENAIISL-------------------- 267 V L +P + A+ F + + I + Sbjct: 262 SVPVTLICTSSSPPQGTNPLAVSAFLESLVNTHDEVKIGVMAPSDSKLWGFLVPKEGLHW 321 Query: 268 ---NLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 +L + A LF+ + + G I + G+AI NR+ +AA Sbjct: 322 RRYDLGPSSDPSVTAHRLFDGLLTLEKEGVHLILIEEVKEDREGLAIMNRVRKAAG 377 >gi|49484340|ref|YP_041564.1| hypothetical protein SAR2204 [Staphylococcus aureus subsp. aureus MRSA252] gi|49242469|emb|CAG41185.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MRSA252] gi|315193281|gb|EFU23679.1| hypothetical protein CGSSa00_02191 [Staphylococcus aureus subsp. aureus CGS00] Length = 348 Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 87/324 (26%), Positives = 150/324 (46%), Gaps = 18/324 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + + G I +PTETVYGLA ++ + A+ ++YE K RP+ NPLI H+ +K Sbjct: 21 INEIKDIVLNGGLIGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKGQLK 80 Query: 72 KH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIE 129 ++DP L + FWPGP++ +L L + + L + R+P ++L++ Sbjct: 81 DFTYTLDPRVEKLMQAFWPGPISFILPLKPGY-LCRKVSGGLSSVAVRMPSHSVGRQLLQ 139 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 PLA PSAN SG+ S T H+ + I I+ S+ GLEST+++ Sbjct: 140 IINEPLAAPSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDCTS-FPY 197 Query: 190 RILRPGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRL------RAIH 242 +I RPG + + + + + ++T P +PGM HY+P + + + + + Sbjct: 198 KIARPGSITAAMITEILPNSIAHADYNDTEQPIAPGMKYKHYSPNTPLTIITDIESKIGN 257 Query: 243 VNPREALIRF----GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSI 297 + I F V E I L +K+A+ NL++ + D+ S+ Sbjct: 258 DGKDWSSIAFIVPSNKVAFIPSEAQFIQL-CQDDNDVKQASHNLYDVLHSLDENENISAA 316 Query: 298 AFSSIPNHGLGIAINNRLERAAAP 321 + AI NR+ +AA Sbjct: 317 YIYGFELNDNTEAIMNRMLKAAGN 340 >gi|260424635|ref|ZP_05732759.2| Sua5/YciO/YrdC/YwlC family protein [Dialister invisus DSM 15470] gi|260402640|gb|EEW96187.1| Sua5/YciO/YrdC/YwlC family protein [Dialister invisus DSM 15470] Length = 350 Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 109/327 (33%), Positives = 163/327 (49%), Gaps = 20/327 (6%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + +++ E + AG +A PTETVYGL ++ + A +++Y K RP+ NPLI HV+DIS Sbjct: 21 DKVKRLGEVIRAGGLVAFPTETVYGLGGNALDKEAAKKIYMAKGRPSDNPLIVHVADISE 80 Query: 70 VKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 V + + PL L + FWPGPLT+V + ++ L+T R P + L Sbjct: 81 VSTYVKRILPLEKRLMEAFWPGPLTIVFP--KKDIVPMATSGGLRTIAIRCPAHEAARAL 138 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I G P+A PSAN S + S T +L + I +IDGG S IGLEST++ V+ Sbjct: 139 IRAAGVPIAGPSANISTKPSPTTADAVL-HDMDGRIEFVIDGGDSLIGLESTVIAVE-NG 196 Query: 188 KVRILRPGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246 K+ I RPGG+ + L+ EL+ E P++PGM HYAP + + + A ++ Sbjct: 197 KIIIYRPGGITRDMLEAFAPTELDTAITAEQEHPKAPGMKYRHYAPSAPLTVYAGNIEAV 256 Query: 247 EALI---------RFG----NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293 E+ I +FG + I I + G KE A NLF + ++ Sbjct: 257 ESEILSFANKGKGKFGFFVSQETAEKIPAGNIIFVWGRRGNKKELAHNLFQGLLFFNNHP 316 Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAA 320 I G+G+AI NRL +A+ Sbjct: 317 VDHIIGEGTDGGGIGMAIMNRLTKASG 343 >gi|282917465|ref|ZP_06325218.1| translation factor [Staphylococcus aureus subsp. aureus D139] gi|283771284|ref|ZP_06344173.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus H19] gi|282318667|gb|EFB49024.1| translation factor [Staphylococcus aureus subsp. aureus D139] gi|283459489|gb|EFC06582.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus H19] Length = 357 Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 88/324 (27%), Positives = 151/324 (46%), Gaps = 18/324 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + + G I +PTETVYGLA ++ + A+ ++YE K RP+ NPLI H+ +K Sbjct: 30 INEIKDIVLNGGLIGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKGQLK 89 Query: 72 KH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIE 129 ++DP L + FWPGP++ +L L + + L + R+P ++L++ Sbjct: 90 DFTYTLDPRVEKLMQAFWPGPISFILPLKPGY-LCRKVSGGLSSVAVRMPSHSVGRQLLQ 148 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 PLA PSAN SG+ S TN H+ + I I+ S+ GLEST+++ Sbjct: 149 IINEPLAAPSANLSGRPSPTNFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDCTS-FPY 206 Query: 190 RILRPGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRL------RAIH 242 +I RPG + + + + + ++T P +PGM HY+P + + + + + Sbjct: 207 KIARPGSITAAMITEILPNSIAHADYNDTEQPIAPGMKYKHYSPNTPLTIITDIESKIGN 266 Query: 243 VNPREALIRF----GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSI 297 + I F V E I L +K+A+ NL++ + D+ S+ Sbjct: 267 DGKDWSSIAFIVPRNKVAFIPSEAQFIQL-CQDDNDVKQASHNLYDVLHSLDENENISAA 325 Query: 298 AFSSIPNHGLGIAINNRLERAAAP 321 + AI NR+ +AA Sbjct: 326 YIYGFELNDNTEAIMNRMLKAAGN 349 >gi|206895712|ref|YP_002247420.1| universally conserved protein [Coprothermobacter proteolyticus DSM 5265] gi|206738329|gb|ACI17407.1| universally conserved protein [Coprothermobacter proteolyticus DSM 5265] Length = 330 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 102/321 (31%), Positives = 163/321 (50%), Gaps = 16/321 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 + + +RKAC+ L G +A PTETVYGL + N A+R+++ +K RP NPLI HVSD+ Sbjct: 11 EQSLIRKACQVLLDGFVVAFPTETVYGLGAIATNEEAVRKIFHLKGRPTDNPLIVHVSDL 70 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126 S V V + + ++FWPGPL+++L + + ++ L++ R+P Sbjct: 71 SQVYDLVTEVPEKARKVMEVFWPGPLSVILQAKESVPL--VTRGGLESVAIRMPAHPVAL 128 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 + P+A PSAN+SG+ S T +H+ + LI+D G + +GLEST+V+V+ E Sbjct: 129 SLIRCAGPIAAPSANKSGRPSPTTAEHVYQDF--GDDVLILDAGPTLVGLESTVVDVR-E 185 Query: 187 KKVRILRPGGLEIETLKRAISVELEYC--VDETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244 + +I RPG + E L+ V +EY ++E SPGM HYAP V L Sbjct: 186 EPWKIYRPGAVTREMLEAHGHVSVEYVGKIEENGAVPSPGMKYRHYAPNVPVFLFRDVDE 245 Query: 245 -----PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF 299 + G I + + II ++L AA ++ ++ A+ G + Sbjct: 246 LPPNQDITVIALDGLASILSGKPNIIFISLGS--DQHSAAARIYMALRQAEQFG-RTAYV 302 Query: 300 SSIPNHGLGIAINNRLERAAA 320 + G+GIA N R+ +AA Sbjct: 303 QLMDEEGIGIAYNERVRKAAG 323 >gi|82751717|ref|YP_417458.1| hypothetical protein SAB2000c [Staphylococcus aureus RF122] gi|82657248|emb|CAI81689.1| conserved hypothetical protein [Staphylococcus aureus RF122] Length = 348 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 88/324 (27%), Positives = 150/324 (46%), Gaps = 18/324 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + + G I +PTETVYGLA ++ + A+ ++YE K RP+ NPLI H+ +K Sbjct: 21 INEIKDIVLNGGLIGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKGQLK 80 Query: 72 KH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIE 129 ++DP L K FWPGP++ +L L + + L + R+P ++L++ Sbjct: 81 DFTYTLDPSVEKLMKAFWPGPISFILPLKPGY-LCRKVSGGLSSVAVRMPSHSVGRQLLQ 139 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 PLA PSAN SG+ S T H+ + I I+ S+ GLEST+++ Sbjct: 140 IINEPLAAPSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDCTS-FPY 197 Query: 190 RILRPGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRL------RAIH 242 +I RPG + + + + + ++T P +PGM HY+P + + + + + Sbjct: 198 KIARPGSITAAMITDILPNSIAHADYNDTEQPIAPGMKYKHYSPNTPLTIITDIESKIGN 257 Query: 243 VNPREALIRF----GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSI 297 + I F V E I L +K+A+ NL++ + D+ S+ Sbjct: 258 DGKDWSSIAFIVPSNKVAFIPSEAQFIQL-CQDDNDVKQASHNLYDVLHSLDENENISAA 316 Query: 298 AFSSIPNHGLGIAINNRLERAAAP 321 + AI NR+ +AA Sbjct: 317 YIYGFELNDNTEAIMNRMLKAAGN 340 >gi|253733050|ref|ZP_04867215.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus TCH130] gi|253728958|gb|EES97687.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus TCH130] Length = 357 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 86/324 (26%), Positives = 150/324 (46%), Gaps = 18/324 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + + G I +PTETVYGLA ++ + A+ ++YE K RP+ NPLI H+ +K Sbjct: 30 INEIKDIVLNGGLIGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKGQLK 89 Query: 72 KH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIE 129 ++DP L + FWPGP++ +L L + + L + R+P ++L++ Sbjct: 90 DFTYTLDPRVEKLMQAFWPGPISFILPLKPGY-LCRKVSGGLSSVAVRMPSHSVGRQLLQ 148 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 PLA PSAN SG+ S T H+ + I I+ S+ GLEST+++ Sbjct: 149 IINEPLAAPSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDCTS-FPY 206 Query: 190 RILRPGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRL------RAIH 242 +I RPG + + + + + ++T P +PGM HY+P + + + + + Sbjct: 207 KIARPGSITAAMITEILPNSIAHADYNDTEQPIAPGMKYKHYSPNTPLTIITDIESKIGN 266 Query: 243 VNPREALIRF----GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSI 297 + I F + E I L +K+A+ NL++ + D+ S+ Sbjct: 267 DGKDWSSIAFIVPSNKMAFIPSEAQFIQL-CQDDNDVKQASHNLYDVLHSLDENENISAA 325 Query: 298 AFSSIPNHGLGIAINNRLERAAAP 321 + AI NR+ +AA Sbjct: 326 YIYGFELNDNTEAIMNRMLKAAGN 349 >gi|94971118|ref|YP_593166.1| translation factor SUA5 [Candidatus Koribacter versatilis Ellin345] gi|94553168|gb|ABF43092.1| translation factor SUA5 [Candidatus Koribacter versatilis Ellin345] Length = 321 Score = 296 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 105/322 (32%), Positives = 163/322 (50%), Gaps = 12/322 (3%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 +TD ++ A L AG ++ PTETVYGL ++ + A+ R+Y K RPA +PLI HV Sbjct: 1 MTDPAEIQAAARLLKAGRLVSFPTETVYGLGANALDAEAVARIYAAKGRPATSPLIVHVD 60 Query: 66 DISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 + M K + P + LA+ FWPGPLTLVL + + P+ A L T R+P Sbjct: 61 SVEMAKSLVTAWPDAADALARAFWPGPLTLVLP--ARDVVPPIVRAGLPTVGVRMPDHPL 118 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + LI G PLA PSANR QIS T +H+ S+ + +++DGG +G+EST++++ Sbjct: 119 AQALIRAAGVPLAAPSANRFTQISPTTAEHV-RRSLGDSVEMVLDGGPCAVGIESTVLSL 177 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 + V +LRPGG+ ++ I + SPGM HY+PR+++ L Sbjct: 178 AGPRAV-LLRPGGVTRAQIEAVIGPIGDADEAPEGAHPSPGMHPRHYSPRTRLLLVKDGE 236 Query: 244 NPREA---LIRFGNVPIKNIENAIISLNLS---KTGKLKEAAFNLFNYMKIADDSGASSI 297 PR+ + +G + NL+ ++ A L++ + ADD G I Sbjct: 237 VPRDGRGIYLSYGRKSPPYAARRMGHPNLTVVEMPASAEKYAARLYDELHRADDGGFDWI 296 Query: 298 AFSSIPNHGLGIAINNRLERAA 319 A +P + +R++RAA Sbjct: 297 AVEQVPETPEWEGVRDRVKRAA 318 >gi|21283769|ref|NP_646857.1| hypothetical protein MW2040 [Staphylococcus aureus subsp. aureus MW2] gi|49486909|ref|YP_044130.1| hypothetical protein SAS2019 [Staphylococcus aureus subsp. aureus MSSA476] gi|21205211|dbj|BAB95905.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MW2] gi|49245352|emb|CAG43827.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MSSA476] Length = 348 Score = 296 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 87/324 (26%), Positives = 151/324 (46%), Gaps = 18/324 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + + G I +PTETVYGLA ++ + A+ ++YE K RP+ NPLI H+ +K Sbjct: 21 INEIKDIVLNGGLIGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKGQLK 80 Query: 72 KH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIE 129 ++DP L + FWPGP++ +L L + + L + R+P ++L++ Sbjct: 81 DFTYTLDPRVEKLMQAFWPGPISFILPLKPGY-LCRKVSGGLSSVAVRMPSHSVGRQLLQ 139 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 PLA PSAN SG+ S T H+ + I I+ S+ GLEST+++ Sbjct: 140 IINEPLAAPSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDCTS-FPY 197 Query: 190 RILRPGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRL------RAIH 242 +I RPG + + + + + ++T P +PGM HY+P + + + + + Sbjct: 198 KIARPGSITAAMITEILPNSIAHADYNDTEQPIAPGMKYKHYSPNTPLTIITDIESKIGN 257 Query: 243 VNPREALIRF----GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSI 297 + I F V E I L +K+A+ NL++ + D+ S+ Sbjct: 258 DGKDWSSIAFIVPSNKVAFIPSEAQFIQL-CQDDNDVKQASHNLYDVLHSLDENENISAA 316 Query: 298 AFSSIPNHGLGIAINNRLERAAAP 321 + AI NR+ +AA+ Sbjct: 317 YIYGFELNDNTEAIMNRMLKAASN 340 >gi|297210063|ref|ZP_06926456.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300910426|ref|ZP_07127878.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus TCH70] gi|296885263|gb|EFH24203.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300888268|gb|EFK83459.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus TCH70] Length = 357 Score = 296 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 87/324 (26%), Positives = 151/324 (46%), Gaps = 18/324 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + + G I +PTETVYGLA ++ + A+ ++YE K RP+ NPLI H+ +K Sbjct: 30 INEIKDIVLNGGLIGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKGQLK 89 Query: 72 KH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIE 129 ++DP L + FWPGP++ +L L + + L + R+P ++L++ Sbjct: 90 DFTYTLDPRVEKLMQAFWPGPISFILPLKPGY-LCRKVSGGLSSVAVRMPSHSVGRQLLQ 148 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 PLA PSAN SG+ S T H+ + I I+ S+ GLEST+++ Sbjct: 149 IINEPLAAPSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDCTS-FPY 206 Query: 190 RILRPGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRL------RAIH 242 +I RPG + + + + + ++T P +PGM HY+P + + + + + Sbjct: 207 KIARPGSITAAMITEILPNSIAHADYNDTEQPIAPGMKYKHYSPNTPLTIITDIESKIGN 266 Query: 243 VNPREALIRF----GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSI 297 + I F V E I L +K+A+ NL++ + D+ S+ Sbjct: 267 DGKDWSSIAFIVPSNKVAFIPSEAQFIQL-CQDDNDVKQASHNLYDVLHSLDENENISAA 325 Query: 298 AFSSIPNHGLGIAINNRLERAAAP 321 + AI NR+ +AA+ Sbjct: 326 YIYGFELNDNTEAIMNRMLKAASN 349 >gi|282850386|ref|ZP_06259765.1| Sua5/YciO/YrdC/YwlC family protein [Veillonella parvula ATCC 17745] gi|282579879|gb|EFB85283.1| Sua5/YciO/YrdC/YwlC family protein [Veillonella parvula ATCC 17745] Length = 343 Score = 296 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 93/340 (27%), Positives = 157/340 (46%), Gaps = 25/340 (7%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +I++ + L G ++IPTETVYGL + + A+ ++Y K RP+ NPLI Sbjct: 4 KIITNPSEQDIDTLARALRNGELVSIPTETVYGLGANGLDSEAMDKIYAAKGRPSDNPLI 63 Query: 62 CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 HV + +K + + L FWPGPLT+ L + + +T L R P Sbjct: 64 LHVPNSESIKSLVTEISATAQALMDTFWPGPLTITLP--KSDLVPDRATGGLSRVALRCP 121 Query: 121 CGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + L+E G P+A PSAN SG+ S T + + + + I I+D G IG+EST Sbjct: 122 DHEACRVLLERAGIPIAAPSANISGRPSPTTAEDVYND-MKGRISYILDAGPCTIGVEST 180 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEY---CVDETSTPQSPGMLKSHYAPRSQV 236 +V V + KV ILRPGG+ L+ ++ +EY V+ + P++PGM +HYAP + + Sbjct: 181 VVEVH-DDKVIILRPGGITKAQLENVVAT-VEYDTALVNAATKPKAPGMKYTHYAPDAPM 238 Query: 237 RLRAIHVNPREALIRFGNVPIKNIENAIIS---------------LNLSKTGKLKEAAFN 281 + + + I+ ++S G + Sbjct: 239 TVVVGSPEAIACTFKELSEGIEGPIGCLVSRETYDLIKGNTDFMCYCFGHHGDALALGHD 298 Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 + + +++ + I + + G G+AI NR+E+A++ Sbjct: 299 FYKSLLHFNENHVTLILAEGVDDDGFGVAIMNRMEKASSH 338 >gi|284025150|ref|ZP_06379548.1| hypothetical protein Saura13_11208 [Staphylococcus aureus subsp. aureus 132] Length = 348 Score = 296 bits (758), Expect = 4e-78, Method: Composition-based stats. Identities = 87/324 (26%), Positives = 149/324 (45%), Gaps = 18/324 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + + G I +PTETVYGLA ++ + A+ ++YE K RP+ NPLI H+ +K Sbjct: 21 INEIKDIVLNGGLIGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKGQLK 80 Query: 72 KH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIE 129 + DP L + FWPGP++ +L L + + L + R+P ++L++ Sbjct: 81 DFTYTFDPRVEKLMQAFWPGPISFILP-LKLGYLCRKVSGGLSSVAVRMPSHSVGRQLLQ 139 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 PLA PSAN SG+ S T H+ + I I+ S+ GLEST+++ Sbjct: 140 IINEPLAAPSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDCTS-FPY 197 Query: 190 RILRPGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRL------RAIH 242 +I RPG + + + + + ++T P +PGM HY+P + + + + + Sbjct: 198 KIARPGSITAAMITEILPNSIAHADYNDTEQPIAPGMKYKHYSPNTPLTIITDIESKIGN 257 Query: 243 VNPREALIRF----GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSI 297 + I F V E I L +K+A+ NL++ + D+ S+ Sbjct: 258 DGKDWSSIAFIVPSNKVAFIPSEAQFIQL-CQDDNDVKQASHNLYDVLHSLDENENISAA 316 Query: 298 AFSSIPNHGLGIAINNRLERAAAP 321 + AI NR+ +AA Sbjct: 317 YIYGFELNDNTEAIMNRMLKAAGN 340 >gi|145220275|ref|YP_001130984.1| translation factor SUA5 [Prosthecochloris vibrioformis DSM 265] gi|145206439|gb|ABP37482.1| translation factor SUA5 [Chlorobium phaeovibrioides DSM 265] Length = 316 Score = 296 bits (758), Expect = 4e-78, Method: Composition-based stats. Identities = 105/324 (32%), Positives = 160/324 (49%), Gaps = 12/324 (3%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ + ITDS +A L+ G +A PTETVYGL +P A+ ++ K RP NPL Sbjct: 1 MKTL-ITDSPL--EAAAILNEGKTVAFPTETVYGLGAAIDSPEALAEVFRAKGRPGDNPL 57 Query: 61 ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I H+ + + A + P + L F+PGPLTLVL ++++ TA L T R Sbjct: 58 IVHIGTPEELPRVASKLSPEAGLLVTRFFPGPLTLVLP--KSSEVPYAVTAGLDTVGVRC 115 Query: 120 PCGFTK-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P + ++ P+A PSANRSG+ S T+ + + + + +I I+ G S+IGLES Sbjct: 116 PAHPAAHEFLKCCHSPVAAPSANRSGRPSATSWEAV-HNDLDGKIAAILRGNTSRIGLES 174 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAI-SVELEYCVDETSTPQSPGMLKSHYAPRSQVR 237 TIV+ + + +LR G + +E L+ + S+ + P+SPG+ HYAPR++V Sbjct: 175 TIVDCTGPRPL-MLRAGAVTLEELQAIVPSITPAGETQKNEAPKSPGLKYPHYAPRARVV 233 Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297 +P + + I L T +E A LF++ + D +I Sbjct: 234 THERGESPAAIPSASAWIGLGTPPVGIALAKLCTTH--EEYARELFSFFRHCDREAIQTI 291 Query: 298 AFSSIPNHGLGIAINNRLERAAAP 321 P GLG AI +RL RAA Sbjct: 292 YCELPPEKGLGRAIRDRLNRAAGN 315 >gi|88196020|ref|YP_500833.1| hypothetical protein SAOUHSC_02357 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|87203578|gb|ABD31388.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] Length = 365 Score = 295 bits (757), Expect = 4e-78, Method: Composition-based stats. Identities = 87/324 (26%), Positives = 150/324 (46%), Gaps = 18/324 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + + G I +PTETVYGLA ++ + A+ ++YE K RP+ NPLI H+ +K Sbjct: 38 INEIKDIVLNGGLIGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKGQLK 97 Query: 72 KH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIE 129 ++DP L + FWPGP++ +L L + + L + R+P ++L++ Sbjct: 98 DFTYTLDPRVEKLMQAFWPGPISFILP-LKLGYLCRKVSGGLSSVAVRMPSHSVGRQLLQ 156 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 PLA PSAN SG+ S T H+ + I I+ S+ GLEST+++ Sbjct: 157 IINEPLAAPSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDCTS-FPY 214 Query: 190 RILRPGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRL------RAIH 242 +I RPG + + + + + ++T P +PGM HY+P + + + + + Sbjct: 215 KIARPGSITAAMITEILPNSIAHADYNDTEQPIAPGMKYKHYSPNTPLTIITDIESKIGN 274 Query: 243 VNPREALIRF----GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSI 297 + I F V E I L +K+A+ NL++ + D+ S+ Sbjct: 275 DGKDWSSIAFIVPSNKVAFIPSEAQFIQL-CQDDNDVKQASHNLYDVLHSLDENENISAA 333 Query: 298 AFSSIPNHGLGIAINNRLERAAAP 321 + AI NR+ +AA Sbjct: 334 YIYGFELNDNTEAIMNRMLKAAGN 357 >gi|258422884|ref|ZP_05685784.1| translation factor SUA5 [Staphylococcus aureus A9635] gi|257846908|gb|EEV70922.1| translation factor SUA5 [Staphylococcus aureus A9635] Length = 357 Score = 295 bits (757), Expect = 5e-78, Method: Composition-based stats. Identities = 89/331 (26%), Positives = 151/331 (45%), Gaps = 18/331 (5%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 I + + + + G I +PTETVYGLA ++ + A+ ++YE K RP+ NPLI H+ Sbjct: 23 DIQQYPKINEIKDIVLNGGLIGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHI 82 Query: 65 SDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 +K ++DP L + FWPGP++ +L L + + L + R+P Sbjct: 83 HSKGQLKDFTYTLDPRVEKLMQAFWPGPISFILPLKPGY-LCRKVSGGLSSVAVRMPSHS 141 Query: 124 T-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 ++L++ PLA PSAN SG+ S T H+ + I I+ S+ GLEST+++ Sbjct: 142 VGRQLLQIINEPLAAPSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLD 200 Query: 183 VQCEKKVRILRPGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRLRAI 241 +I RPG + + + + + ++T P +PGM HY+P + + + A Sbjct: 201 CTS-FPYKIARPGSITAAMITDILPNSIVHADYNDTEQPIAPGMKYKHYSPNTPLTIIAD 259 Query: 242 ------HVNPREALIRF----GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291 + + I F V E I L +K+A+ NL++ + D+ Sbjct: 260 IESKIGNDGKDWSSIAFIVPSNKVAFIPSEAQFIQL-CQDDNDVKQASHNLYDVLHSLDE 318 Query: 292 -SGASSIAFSSIPNHGLGIAINNRLERAAAP 321 S+ + AI NR+ +AA Sbjct: 319 NENISAAYIYGFELNDNTEAIMNRMLKAAGN 349 >gi|256545368|ref|ZP_05472731.1| Sua5/YciO/YrdC/YwlC family protein [Anaerococcus vaginalis ATCC 51170] gi|256398929|gb|EEU12543.1| Sua5/YciO/YrdC/YwlC family protein [Anaerococcus vaginalis ATCC 51170] Length = 345 Score = 295 bits (757), Expect = 5e-78, Method: Composition-based stats. Identities = 107/341 (31%), Positives = 171/341 (50%), Gaps = 25/341 (7%) Query: 2 QIMSI----TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 +I+ I D N L A E + G +A PTETVYGL D NP A +++++ K RP Sbjct: 4 EILKIDRENIDENILNHAAEIIKKGELVAFPTETVYGLGADGLNPKAAKKIFKAKNRPED 63 Query: 58 NPLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 NPLI H+ + + + VD + L K WPGPLT++L ++ I + T T Sbjct: 64 NPLILHIDEDYKLDELVEKVDDRTKFLIKNLWPGPLTVIL--KKSSIIPDIITGGGDTVA 121 Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R P ++ I+ P+A PSAN SG+ S TN K + + IPLIIDGG S IG Sbjct: 122 VRRPKDKLAREFIKYCNTPIAAPSANISGRPSPTNAKDVYYD-MNGRIPLIIDGGSSDIG 180 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPR 233 +EST++++ E ILRPG E +K+ I + VD++ P+SPG HYAP+ Sbjct: 181 IESTVIDMSLENPC-ILRPGYYTYEYIKKFIPNVCLDDSLVDDSKVPRSPGQKYKHYAPK 239 Query: 234 SQV----------RLRAIHVNPREALIRFGNVPIKNIE---NAIISLNLSKTGKLKEAAF 280 +++ +++ + + + + G + ++ +L+L L E + Sbjct: 240 AEMKVFVGDKSVEKIKDLALKYKNEGKKVGILVFDKDTEKFSSFTTLSLGNKDNLIEMSH 299 Query: 281 NLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 LF ++ D I + + GLG +I NR++++A+ Sbjct: 300 VLFEALRDLDRKNVDIILAEGVKDIGLGKSIMNRMKKSASG 340 >gi|302348551|ref|YP_003816189.1| Putative translation factor (SUA5) [Acidilobus saccharovorans 345-15] gi|302328963|gb|ADL19158.1| Putative translation factor (SUA5) [Acidilobus saccharovorans 345-15] Length = 361 Score = 295 bits (756), Expect = 6e-78, Method: Composition-based stats. Identities = 94/324 (29%), Positives = 152/324 (46%), Gaps = 32/324 (9%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLSLHL 83 +A PTETVYGL D+ NP A+++++ K+RP NPLI H+ ++ + + A + P + L Sbjct: 36 VAFPTETVYGLGADTYNPEAVKKVFIAKRRPMDNPLIVHIHSLNQLYEVAVKIPPEAEKL 95 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142 A+ FWPGP+TL+L + + P TA T R+P I G P+A PSAN Sbjct: 96 ARRFWPGPMTLLL--WKSDKVPPEVTAGRPTVAVRMPAHPVALAFIRESGVPIAAPSANL 153 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202 +G+ S T +H++ + +IID G + G+ESTIV++ + V +LRPGGL +E + Sbjct: 154 AGRPSPTTGEHVVRD-LYGRADVIIDSGETVYGVESTIVDMTRDPPV-LLRPGGLPVEEI 211 Query: 203 KRAISVEL-----EYCVDETSTPQSPGMLKSHYAPRSQVRL------------------- 238 +R + E+ + + +PGM HYAP ++ + Sbjct: 212 ERELGKEVVIPQFARGLGQADVALAPGMKYRHYAPFKRLTIVEGDYSDLKAYAAKVAEVV 271 Query: 239 -RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDS-GASS 296 + I R ++ + + L L + A NLF + D+ Sbjct: 272 KQEIAKGARPIILCSSETAQYYEQQGLRHLVLGPRSNIFIVARNLFKTFRAIDEMLDVDE 331 Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320 GLG+A+ NR +A+ Sbjct: 332 AFMEGFEERGLGLAVMNRARKASG 355 >gi|329768870|ref|ZP_08260298.1| hypothetical protein HMPREF0433_00062 [Gemella sanguinis M325] gi|328837233|gb|EGF86870.1| hypothetical protein HMPREF0433_00062 [Gemella sanguinis M325] Length = 343 Score = 295 bits (756), Expect = 6e-78, Method: Composition-based stats. Identities = 100/342 (29%), Positives = 170/342 (49%), Gaps = 23/342 (6%) Query: 2 QIMSITDSNALRKACEFL----DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 +I++I+ S + + L + +AIPTETVYGL+ D+ + AI ++YE K RP+ Sbjct: 4 EIINISKSKNKAEIYKKLQQYYKSDKLVAIPTETVYGLSADATSDKAISKIYEAKGRPSD 63 Query: 58 NPLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 NPLI H D+ + D L FWPGP+TL+L+ + I TA L T Sbjct: 64 NPLIVHFYDVKQLDNIVDYADDRVGILIDKFWPGPMTLILNAIENNGISNNVTAGLNTLA 123 Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R+P +++++ LA PSAN SG+ S T +H+ + ++I +II+ S IG Sbjct: 124 VRMPSNTTAREILKETQVLLAAPSANTSGKPSPTKYEHVY-HDLNEKIDVIIEDEQSDIG 182 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAIS----VELEYCVDETSTPQSPGMLKSHYA 231 LEST+++ + I RPG + E ++ + V + +DE P +PGM HY+ Sbjct: 183 LESTVIDCTKN-PLVIARPGEITKEDIENVLGEGSVVYNDEIIDEDQAPIAPGMKYRHYS 241 Query: 232 PRSQVRLRAIHVNPREALIR-----FGNVPIKNIENAIISLNLS------KTGKLKEAAF 280 P +++ L L++ G + N +N + LN+S +++++ Sbjct: 242 PEAELILYRHSFEDLLELLKTKGKETGFITYDNYKNKLKGLNISIKYLADSEKSVEQSSK 301 Query: 281 NLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 NL+N ++ D+ I I + +A+ NRL +A + + Sbjct: 302 NLYNILREFDEENIKEIYILPIKENKENVALLNRLNKAISKK 343 >gi|261414826|ref|YP_003248509.1| Sua5/YciO/YrdC/YwlC family protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371282|gb|ACX74027.1| Sua5/YciO/YrdC/YwlC family protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|302328197|gb|ADL27398.1| Sua5/YciO/YrdC/YwlC family/SUA5 domain protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 331 Score = 295 bits (756), Expect = 6e-78, Method: Composition-based stats. Identities = 105/325 (32%), Positives = 169/325 (52%), Gaps = 13/325 (4%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 +M ++ +A L G +AIPTETVYGLA ++ P A+ +++ K+RP +PL Sbjct: 10 FWVMKFPPWTSVSEAARLLKEGEVVAIPTETVYGLAGNAFEPKALAKIFAAKERPTFDPL 69 Query: 61 ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I H++DI+ + A + + LA+ +WPGP+T++L I L T+ L + R Sbjct: 70 IVHIADIAQLTDIAKDIPDSAYRLAEAYWPGPMTIILPKKDC--IPDLCTSALPSVAVRF 127 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P + +I+ G PLA PSAN +S T +H+ ++ + I I+DGG +G+ES Sbjct: 128 PSHPIAQAIIKESGLPLAAPSANLFKHVSPTTAEHV-AAQLADRIAGIVDGGPCSVGVES 186 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCVDETSTPQ-SPGMLKSHYAPRSQV 236 +I+++ E V +RPG + E K + V+++ + P +PG +HY R QV Sbjct: 187 SIISLVGEPTV--MRPGAITPEMFKAILGEVKIKESTSKPGQPMLAPGQCDTHY--RPQV 242 Query: 237 RLRAIHVNPREALIRFGNVPIKNIENAII--SLNLSKTGKLKEAAFNLFNYMKIADDSGA 294 L V AL + + ++NLS TG + EA L+ +M DD Sbjct: 243 PLYYGEVPAGYALPEHTVRIAFGTQQGPVPATVNLSATGDMVEATSKLYAFMHDLDDPKF 302 Query: 295 SSIAFSSIPNHGLGIAINNRLERAA 319 I IPN G+G+A+N+RL+RA+ Sbjct: 303 DLILVDPIPNTGVGMALNDRLKRAS 327 >gi|313884935|ref|ZP_07818687.1| Sua5/YciO/YrdC/YwlC family protein [Eremococcus coleocola ACS-139-V-Col8] gi|312619626|gb|EFR31063.1| Sua5/YciO/YrdC/YwlC family protein [Eremococcus coleocola ACS-139-V-Col8] Length = 346 Score = 295 bits (756), Expect = 6e-78, Method: Composition-based stats. Identities = 109/341 (31%), Positives = 169/341 (49%), Gaps = 25/341 (7%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ I + L +A + L G +A PTETV+GL + N A++ +++ K RP NPL Sbjct: 5 MKTH-IFMPDQLDQAAQCLKEGGLVAFPTETVFGLGAIANNEAAVQSVFKTKGRPNDNPL 63 Query: 61 ICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I HV+ I V + ASV PL+ L + FWPGPLT++L + T P +TA TA FR+ Sbjct: 64 IIHVASIESVHHYAASVSPLAQALMEKFWPGPLTIILPI-KTGTFAPAATAGQNTAGFRM 122 Query: 120 PC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII-DGGISKIGLE 177 P T LI+ G PL PSAN SG+ S T++ H+L K ++ ++ IG+E Sbjct: 123 PDQDQTLALIDKVGFPLVGPSANLSGKPSPTSLAHVLHDFNGKIAGVVANQAELTAIGVE 182 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD----ETSTPQSPGMLKSHYAPR 233 ST+V + + ILRPG + ++ ++ AI V SPG+ HY+P+ Sbjct: 183 STVV-LPLADHIEILRPGHVTVDMIEEAIGVPAHVRTAAEQLANQAIMSPGVKYRHYSPK 241 Query: 234 SQVRLRAIHV---NPREALIRFGNV-----------PIKNIENAIISLNLSKTGKLKEAA 279 V L A + +E + +F ++N + + S +L K G + A Sbjct: 242 QPVYLMAFDHTLEDWQEEIDKFPEAVAILAYQDHITSLQNHQKVVASYSLGKKGDWESAT 301 Query: 280 FNLFNYMKIADDSGASSIAFSSI-PNHGLGIAINNRLERAA 319 +LF ++ ++S A + + P A NRL +AA Sbjct: 302 RHLFAGLRALEESSAKILMVQGLDPKVADHQAYMNRLSKAA 342 >gi|298695390|gb|ADI98612.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp. aureus ED133] Length = 348 Score = 295 bits (756), Expect = 6e-78, Method: Composition-based stats. Identities = 86/324 (26%), Positives = 149/324 (45%), Gaps = 18/324 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + + G I +PTETVYGLA ++ + A+ ++YE K RP+ NPLI H+ +K Sbjct: 21 INEIKDIVLNGGLIGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKVQLK 80 Query: 72 KH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIE 129 ++DP L + FWPGP++ +L L + + L + R+P ++L++ Sbjct: 81 DFTYTLDPRVEKLMQAFWPGPISFILPLKPGY-LCRKVSGGLSSVAVRMPSHSVGRQLLQ 139 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 PLA PSAN SG+ S T H+ + I I+ S+ GLEST+++ Sbjct: 140 IINEPLAAPSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDCTS-FPY 197 Query: 190 RILRPGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRL------RAIH 242 +I RPG + + + + + ++T P +PGM HY+P + + + + + Sbjct: 198 KIARPGSITAAMITDILPNSIAHADYNDTEQPIAPGMKYKHYSPNTPLTIITDIESKIGN 257 Query: 243 VNPREALIRF----GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSI 297 + I F E I L +K+A+ NL++ + D+ S+ Sbjct: 258 DGKDWSYIAFIVPSNKAAFIPSEAQFIQL-CQDDNDVKQASHNLYDVLHSLDENENISAA 316 Query: 298 AFSSIPNHGLGIAINNRLERAAAP 321 + AI NR+ +AA Sbjct: 317 YIYGFELNDNTEAIMNRMLKAAGN 340 >gi|163795817|ref|ZP_02189781.1| Putative translation factor [alpha proteobacterium BAL199] gi|159178850|gb|EDP63386.1| Putative translation factor [alpha proteobacterium BAL199] Length = 320 Score = 295 bits (756), Expect = 7e-78, Method: Composition-based stats. Identities = 122/319 (38%), Positives = 173/319 (54%), Gaps = 11/319 (3%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 + D +A +A L +G +A PTETVYGL D+ + A+ ++ K RP NPLI HV Sbjct: 11 PVDDPDARAEAAGLLRSGALVAFPTETVYGLGADATDEDAVAGIFAAKDRPRFNPLISHV 70 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123 + LA WPGPLT+VL I L++A L+T RVP Sbjct: 71 PTADAAFALGQATEAAKRLAATHWPGPLTMVLQRRPGCPIAWLTSAGLETVALRVPGSAA 130 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + L+ G P+A PSANRSG++S T H+ + + + LI+DGG +GLEST+V++ Sbjct: 131 ARSLLAEVGRPVAAPSANRSGRVSPTTAAHV-AEELGGRVALILDGGPCPVGLESTVVDL 189 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 ++ R+LRPG + E ++ + ++ V E +PGML SHYAP++ VRL A Sbjct: 190 SGDRP-RLLRPGAVTREQIEALLG-PIDLAV-EGDAITAPGMLASHYAPKAPVRLNATDR 246 Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303 P EA + FG A +LS +G L AA LF ++ D G ++IA + +P Sbjct: 247 RPGEAFLDFGAT------VAGADADLSPSGDLLAAAAKLFAALRALDRPGIAAIAVARVP 300 Query: 304 NHGLGIAINNRLERAAAPR 322 GLG AIN+RL RAAAPR Sbjct: 301 VGGLGAAINDRLRRAAAPR 319 >gi|254566675|ref|XP_002490448.1| Protein required for respiratory growth [Pichia pastoris GS115] gi|238030244|emb|CAY68167.1| Protein required for respiratory growth [Pichia pastoris GS115] Length = 377 Score = 295 bits (756), Expect = 7e-78, Method: Composition-based stats. Identities = 106/334 (31%), Positives = 161/334 (48%), Gaps = 28/334 (8%) Query: 12 LRKACEFLDAGL-PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 L +A L + I PTETVYGL S N +++ +Y K RP NPLI HV+ +S + Sbjct: 37 LDEASIILRSHKNCIGFPTETVYGLGASSLNDESVKSIYIAKNRPLDNPLITHVASLSQL 96 Query: 71 KKHA-----SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 + + + L L K FWPGPLT++L + T + L+TA T R+P Sbjct: 97 HRKILPPSTKIPDIYLPLIKKFWPGPLTILLPVEDDTTLSRLTTAGQDTFAVRIPNHPVA 156 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + LI PLA PSAN S + S T +H+ + IPLIIDGG S +GLES++VN Sbjct: 157 RALIAISDEPLAAPSANASTRPSPTLAEHVY-HDLQGRIPLIIDGGPSNVGLESSVVNGL 215 Query: 185 CEKKVRILRPGGLEIETLKRAIS-----VELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 + +LRPGG+ ++ ++ V + + + ++PGM HY+P ++V L Sbjct: 216 TNPPM-LLRPGGISLKQIQEVGHGWEDIVTAKKTANASEPVRTPGMKYKHYSPTAKVILF 274 Query: 240 AI--------------HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNY 285 + N + AL+ I A ++ + E A NLF Sbjct: 275 VKCGNGVKAVQEALSRYPNSKIALLTGSEFEIPETLQAQFAIVDHLGSSITEMAHNLFAK 334 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 ++ D + I +P+ G G+A+ NRL +AA Sbjct: 335 LRNLDKNDMDYIFIEGVPDAGEGLALMNRLSKAA 368 >gi|258453174|ref|ZP_05701165.1| translation factor SUA5 [Staphylococcus aureus A5948] gi|282923104|ref|ZP_06330789.1| translation factor [Staphylococcus aureus A9765] gi|294850086|ref|ZP_06790823.1| translation factor [Staphylococcus aureus A9754] gi|304379297|ref|ZP_07362036.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|257859120|gb|EEV81977.1| translation factor SUA5 [Staphylococcus aureus A5948] gi|282593295|gb|EFB98292.1| translation factor [Staphylococcus aureus A9765] gi|294823034|gb|EFG39466.1| translation factor [Staphylococcus aureus A9754] gi|302751997|gb|ADL66174.1| yrdC/SUA5 multi-domain translation factor protein [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304342156|gb|EFM08056.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|320140712|gb|EFW32564.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320143688|gb|EFW35465.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus MRSA177] Length = 357 Score = 295 bits (755), Expect = 7e-78, Method: Composition-based stats. Identities = 87/324 (26%), Positives = 150/324 (46%), Gaps = 18/324 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + + G I +PTETVYGLA ++ + A+ ++YE K RP+ NPLI H+ +K Sbjct: 30 INEIKDIVLNGGLIGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKGQLK 89 Query: 72 KH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIE 129 ++DP L + FWPGP++ +L L + + L + R+P ++L++ Sbjct: 90 DFTYTLDPRVEKLMQAFWPGPISFILP-LKLGYLCRKVSGGLSSVAVRMPSHSVGRQLLQ 148 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 PLA PSAN SG+ S T H+ + I I+ S+ GLEST+++ Sbjct: 149 IINEPLAAPSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDCTS-FPY 206 Query: 190 RILRPGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRL------RAIH 242 +I RPG + + + + + ++T P +PGM HY+P + + + + + Sbjct: 207 KIARPGSITAAMITEILPNSIAHADYNDTEQPIAPGMKYKHYSPNTPLTIITDIESKIGN 266 Query: 243 VNPREALIRF----GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSI 297 + I F V E I L +K+A+ NL++ + D+ S+ Sbjct: 267 DGKDWSSIAFIVPSNKVAFIPSEAQFIQL-CQDDNDVKQASHNLYDVLHSLDENENISAA 325 Query: 298 AFSSIPNHGLGIAINNRLERAAAP 321 + AI NR+ +AA Sbjct: 326 YIYGFELNDNTEAIMNRMLKAAGN 349 >gi|167648441|ref|YP_001686104.1| Sua5/YciO/YrdC/YwlC family protein [Caulobacter sp. K31] gi|167350871|gb|ABZ73606.1| Sua5/YciO/YrdC/YwlC family protein [Caulobacter sp. K31] Length = 296 Score = 295 bits (755), Expect = 7e-78, Method: Composition-based stats. Identities = 119/303 (39%), Positives = 169/303 (55%), Gaps = 11/303 (3%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 + AG + +PTETVYGL D+ NP A+ ++E K RP NPLI HV+ + + A +D Sbjct: 1 MAAGGLVLLPTETVYGLGADAANPAAVAAIFEAKGRPRFNPLIAHVASLEDAARIAVLDE 60 Query: 79 LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAI 137 +L LA FWPGPLTLV + + L+ A L T RVP ++ ++ +G P+ Sbjct: 61 RALALAAAFWPGPLTLVAPIRDAAAVCDLARAGLDTVAIRVPGHPLSRAVLAAFGGPVVA 120 Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197 PSANRSG+ S T + + + + + +DGG ++GLEST+V V + R+LRPG + Sbjct: 121 PSANRSGRPSPTTFEDAFAET-GDKAAVALDGGPCQVGLESTVVAVL-DGPPRLLRPGAV 178 Query: 198 EIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPI 257 L+ + E +SPG L HYAP + VR+ A EA + FG P+ Sbjct: 179 TRAQLEAVVG---PLAEAENDARRSPGRLALHYAPDAPVRIDAARPEAGEAFLAFGPWPM 235 Query: 258 KNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLER 317 NLS TG L EAA NLF++++ AD S+IA ++IP+ GLG AIN+RL R Sbjct: 236 -----GAGVFNLSPTGDLAEAAANLFSFLRAADRLKPSAIAVAAIPHEGLGEAINDRLRR 290 Query: 318 AAA 320 AA Sbjct: 291 AAG 293 >gi|87162029|ref|YP_494716.1| hypothetical protein SAUSA300_2070 [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|151222232|ref|YP_001333054.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus str. Newman] gi|221141635|ref|ZP_03566128.1| hypothetical protein SauraJ_08375 [Staphylococcus aureus subsp. aureus str. JKD6009] gi|262049283|ref|ZP_06022158.1| hypothetical protein SAD30_0494 [Staphylococcus aureus D30] gi|262052618|ref|ZP_06024812.1| hypothetical protein SA930_2015 [Staphylococcus aureus 930918-3] gi|87128003|gb|ABD22517.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|150375032|dbj|BAF68292.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus str. Newman] gi|259159488|gb|EEW44538.1| hypothetical protein SA930_2015 [Staphylococcus aureus 930918-3] gi|259162648|gb|EEW47215.1| hypothetical protein SAD30_0494 [Staphylococcus aureus D30] gi|269941715|emb|CBI50122.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus TW20] gi|315196950|gb|EFU27292.1| hypothetical protein CGSSa01_03341 [Staphylococcus aureus subsp. aureus CGS01] gi|329314801|gb|AEB89214.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus T0131] gi|329724053|gb|EGG60577.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus 21189] Length = 348 Score = 295 bits (755), Expect = 8e-78, Method: Composition-based stats. Identities = 87/324 (26%), Positives = 150/324 (46%), Gaps = 18/324 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + + G I +PTETVYGLA ++ + A+ ++YE K RP+ NPLI H+ +K Sbjct: 21 INEIKDIVLNGGLIGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKGQLK 80 Query: 72 KH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIE 129 ++DP L + FWPGP++ +L L + + L + R+P ++L++ Sbjct: 81 DFTYTLDPRVEKLMQAFWPGPISFILP-LKLGYLCRKVSGGLSSVAVRMPSHSVGRQLLQ 139 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 PLA PSAN SG+ S T H+ + I I+ S+ GLEST+++ Sbjct: 140 IINEPLAAPSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDCTS-FPY 197 Query: 190 RILRPGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRL------RAIH 242 +I RPG + + + + + ++T P +PGM HY+P + + + + + Sbjct: 198 KIARPGSITAAMITEILPNSIAHADYNDTEQPIAPGMKYKHYSPNTPLTIITDIESKIGN 257 Query: 243 VNPREALIRF----GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSI 297 + I F V E I L +K+A+ NL++ + D+ S+ Sbjct: 258 DGKDWSSIAFIVPSNKVAFIPSEAQFIQL-CQDDNDVKQASHNLYDVLHSLDENENISAA 316 Query: 298 AFSSIPNHGLGIAINNRLERAAAP 321 + AI NR+ +AA Sbjct: 317 YIYGFELNDNTEAIMNRMLKAAGN 340 >gi|57652138|ref|YP_186923.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus COL] gi|57286324|gb|AAW38418.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus COL] Length = 351 Score = 295 bits (755), Expect = 8e-78, Method: Composition-based stats. Identities = 87/324 (26%), Positives = 150/324 (46%), Gaps = 18/324 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + + G I +PTETVYGLA ++ + A+ ++YE K RP+ NPLI H+ +K Sbjct: 24 INEIKDIVLNGGLIGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKGQLK 83 Query: 72 KH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIE 129 ++DP L + FWPGP++ +L L + + L + R+P ++L++ Sbjct: 84 DFTYTLDPRVEKLMQAFWPGPISFILP-LKLGYLCRKVSGGLSSVAVRMPSHSVGRQLLQ 142 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 PLA PSAN SG+ S T H+ + I I+ S+ GLEST+++ Sbjct: 143 IINEPLAAPSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDCTS-FPY 200 Query: 190 RILRPGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRL------RAIH 242 +I RPG + + + + + ++T P +PGM HY+P + + + + + Sbjct: 201 KIARPGSITAAMITEILPNSIAHADYNDTEQPIAPGMKYKHYSPNTPLTIITDIESKIGN 260 Query: 243 VNPREALIRF----GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSI 297 + I F V E I L +K+A+ NL++ + D+ S+ Sbjct: 261 DGKDWSSIAFIVPSNKVAFIPSEAQFIQL-CQDDNDVKQASHNLYDVLHSLDENENISAA 319 Query: 298 AFSSIPNHGLGIAINNRLERAAAP 321 + AI NR+ +AA Sbjct: 320 YIYGFELNDNTEAIMNRMLKAAGN 343 >gi|148268567|ref|YP_001247510.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus JH9] gi|150394631|ref|YP_001317306.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus JH1] gi|257793874|ref|ZP_05642853.1| translation factor SUA5 [Staphylococcus aureus A9781] gi|258422064|ref|ZP_05684981.1| translation factor SUA5 [Staphylococcus aureus A9719] gi|258433567|ref|ZP_05688640.1| translation factor [Staphylococcus aureus A9299] gi|258440462|ref|ZP_05690632.1| translation factor [Staphylococcus aureus A8115] gi|258445670|ref|ZP_05693848.1| translation factor SUA5 [Staphylococcus aureus A6300] gi|258450124|ref|ZP_05698219.1| translation factor SUA5 [Staphylococcus aureus A6224] gi|258453421|ref|ZP_05701403.1| translation factor SUA5 [Staphylococcus aureus A5937] gi|282894760|ref|ZP_06302986.1| translation factor [Staphylococcus aureus A8117] gi|282929040|ref|ZP_06336625.1| translation factor [Staphylococcus aureus A10102] gi|295407046|ref|ZP_06816848.1| translation factor [Staphylococcus aureus A8819] gi|297246045|ref|ZP_06929902.1| translation factor [Staphylococcus aureus A8796] gi|147741636|gb|ABQ49934.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus JH9] gi|149947083|gb|ABR53019.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus JH1] gi|257787846|gb|EEV26186.1| translation factor SUA5 [Staphylococcus aureus A9781] gi|257841964|gb|EEV66396.1| translation factor SUA5 [Staphylococcus aureus A9719] gi|257849298|gb|EEV73277.1| translation factor [Staphylococcus aureus A9299] gi|257852531|gb|EEV76449.1| translation factor [Staphylococcus aureus A8115] gi|257855509|gb|EEV78446.1| translation factor SUA5 [Staphylococcus aureus A6300] gi|257856598|gb|EEV79504.1| translation factor SUA5 [Staphylococcus aureus A6224] gi|257864402|gb|EEV87148.1| translation factor SUA5 [Staphylococcus aureus A5937] gi|282589346|gb|EFB94438.1| translation factor [Staphylococcus aureus A10102] gi|282762848|gb|EFC02982.1| translation factor [Staphylococcus aureus A8117] gi|294968071|gb|EFG44098.1| translation factor [Staphylococcus aureus A8819] gi|297177044|gb|EFH36299.1| translation factor [Staphylococcus aureus A8796] Length = 357 Score = 295 bits (755), Expect = 8e-78, Method: Composition-based stats. Identities = 87/324 (26%), Positives = 150/324 (46%), Gaps = 18/324 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + + G I +PTETVYGLA ++ + A+ ++YE K RP+ NPLI H+ +K Sbjct: 30 INEIKDIVLNGGLIGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKVQLK 89 Query: 72 KH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIE 129 ++DP L + FWPGP++ +L L + + L + R+P ++L++ Sbjct: 90 DFTYTLDPRVEKLMQAFWPGPISFILPLKPGY-LCRKVSGGLSSVAVRMPSHSVGRQLLQ 148 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 PLA PSAN SG+ S T H+ + I I+ S+ GLEST+++ Sbjct: 149 IINEPLAAPSANLSGRPSPTTFNHVY-QDLNARIDGIVQAEQSEEGLESTVLDCTS-FPY 206 Query: 190 RILRPGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRL------RAIH 242 +I RPG + + + + + ++T P +PGM HY+P + + + + + Sbjct: 207 KIARPGSITAAMITEILPNSIAHADYNDTEQPIAPGMKYKHYSPNTPLTIITDIESKIGN 266 Query: 243 VNPREALIRF----GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSI 297 + I F V E I L +K+A+ NL++ + D+ S+ Sbjct: 267 DGKDWSSIAFIVPSNKVAFIPSEAQFIQL-CQDDNDVKQASHNLYDVLHSLDENENISAA 325 Query: 298 AFSSIPNHGLGIAINNRLERAAAP 321 + AI NR+ +AA Sbjct: 326 YIYGFELNDNTEAIMNRMLKAAGN 349 >gi|15925106|ref|NP_372640.1| hypothetical protein SAV2116 [Staphylococcus aureus subsp. aureus Mu50] gi|15927690|ref|NP_375223.1| hypothetical protein SA1918 [Staphylococcus aureus subsp. aureus N315] gi|156980431|ref|YP_001442690.1| hypothetical protein SAHV_2100 [Staphylococcus aureus subsp. aureus Mu3] gi|253315785|ref|ZP_04838998.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006904|ref|ZP_05145505.2| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus Mu50-omega] gi|258407042|ref|ZP_05680192.1| translation factor SUA5 [Staphylococcus aureus A9763] gi|269203752|ref|YP_003283021.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus ED98] gi|296275405|ref|ZP_06857912.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus MR1] gi|13701910|dbj|BAB43202.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus N315] gi|14247889|dbj|BAB58278.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] gi|156722566|dbj|BAF78983.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|257841375|gb|EEV65819.1| translation factor SUA5 [Staphylococcus aureus A9763] gi|262076042|gb|ACY12015.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus ED98] gi|285817780|gb|ADC38267.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus 04-02981] gi|312830468|emb|CBX35310.1| SUA5 domain protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315128787|gb|EFT84787.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus CGS03] gi|329726329|gb|EGG62797.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus 21172] Length = 348 Score = 295 bits (755), Expect = 9e-78, Method: Composition-based stats. Identities = 87/324 (26%), Positives = 150/324 (46%), Gaps = 18/324 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + + G I +PTETVYGLA ++ + A+ ++YE K RP+ NPLI H+ +K Sbjct: 21 INEIKDIVLNGGLIGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKVQLK 80 Query: 72 KH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIE 129 ++DP L + FWPGP++ +L L + + L + R+P ++L++ Sbjct: 81 DFTYTLDPRVEKLMQAFWPGPISFILPLKPGY-LCRKVSGGLSSVAVRMPSHSVGRQLLQ 139 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 PLA PSAN SG+ S T H+ + I I+ S+ GLEST+++ Sbjct: 140 IINEPLAAPSANLSGRPSPTTFNHVY-QDLNARIDGIVQAEQSEEGLESTVLDCTS-FPY 197 Query: 190 RILRPGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRL------RAIH 242 +I RPG + + + + + ++T P +PGM HY+P + + + + + Sbjct: 198 KIARPGSITAAMITEILPNSIAHADYNDTEQPIAPGMKYKHYSPNTPLTIITDIESKIGN 257 Query: 243 VNPREALIRF----GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSI 297 + I F V E I L +K+A+ NL++ + D+ S+ Sbjct: 258 DGKDWSSIAFIVPSNKVAFIPSEAQFIQL-CQDDNDVKQASHNLYDVLHSLDENENISAA 316 Query: 298 AFSSIPNHGLGIAINNRLERAAAP 321 + AI NR+ +AA Sbjct: 317 YIYGFELNDNTEAIMNRMLKAAGN 340 >gi|302333762|gb|ADL23955.1| yrdC/SUA5 multi-domain translation factor protein [Staphylococcus aureus subsp. aureus JKD6159] Length = 348 Score = 295 bits (755), Expect = 9e-78, Method: Composition-based stats. Identities = 86/324 (26%), Positives = 150/324 (46%), Gaps = 18/324 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + + G I +PTETVYGLA ++ + A+ ++YE K RP+ NPLI H+ +K Sbjct: 21 INEIKDIVLNGGLIGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKGQLK 80 Query: 72 KH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIE 129 ++DP L + FWPGP++ +L L + + L + R+P ++L++ Sbjct: 81 DFTYTLDPRVEKLMQAFWPGPISFILPLKPGY-LCRKVSGGLSSVAVRMPSHSVGRQLLQ 139 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 PLA PSAN SG+ S T H+ + I I+ S+ GLEST+++ Sbjct: 140 IINEPLAAPSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDCTS-FPY 197 Query: 190 RILRPGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRL------RAIH 242 +I RPG + + + + + ++T P +PGM HY+P + + + + + Sbjct: 198 KIARPGSITAAMITDILPNSIAHADYNDTEQPIAPGMKYKHYSPNTPLTIITDIESKIGN 257 Query: 243 VNPREALIRF----GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSI 297 + I F V + I L +K+A+ NL++ + D+ S+ Sbjct: 258 DGKDWSSIAFIVPSNKVAFIPSDAQFIQL-CQDDNDVKQASHNLYDVLHSLDENENISAA 316 Query: 298 AFSSIPNHGLGIAINNRLERAAAP 321 + AI NR+ +AA Sbjct: 317 YIYGFELNDNTEAIMNRMLKAAGN 340 >gi|115443354|ref|XP_001218484.1| protein SUA5 [Aspergillus terreus NIH2624] gi|114188353|gb|EAU30053.1| protein SUA5 [Aspergillus terreus NIH2624] Length = 434 Score = 295 bits (755), Expect = 9e-78, Method: Composition-based stats. Identities = 102/376 (27%), Positives = 160/376 (42%), Gaps = 81/376 (21%) Query: 24 PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA--------- 74 P+A PTETVYGL D+ +A++ +Y+ K+RP+ NPLI HV +SM+++ Sbjct: 56 PVAFPTETVYGLGADATRSSAVQGIYKAKQRPSDNPLIIHVDSLSMLERLLNPVQMSPTR 115 Query: 75 -------SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126 S+ P+ L + FWPGPLT++L S + + T+NL T R+P + Sbjct: 116 ATKTARNSIPPIYHPLIERFWPGPLTILLPNPSGSLLADEVTSNLTTFGVRMPASPLARL 175 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LI PLA PSAN S + S T +H+ + I LI+DGG +G+EST+V+ + Sbjct: 176 LIHVADRPLAAPSANASTKPSPTTAEHVY-HDLQGRIELILDGGPCGVGVESTVVDGLSD 234 Query: 187 KKVRILRPGGLEIETLKRAISVEL------EYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 ILRPGG+ IE L+ E + +D P++PGM HY+P+++V L Sbjct: 235 PPA-ILRPGGIGIEELRSCAGWENVQVGYHDGTLDVKEVPRAPGMKYRHYSPKARVVLFE 293 Query: 241 IHVNPREALIRF--------------GNVPIKNIENAII--------------------- 265 + + G V K+ + + Sbjct: 294 PGSDEKAVAKHVHKDLEDTAIGAHMIGVVRTKHWKRGLGLVSEEEIQKTVKPIPSLVDTL 353 Query: 266 -------------------SLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306 + + ++ A LF ++ D+ I I + Sbjct: 354 VGFSMPVKDQANGCPAVKEAFDCHLGTDVESIARGLFAALRAMDEMEVDVIYVEGISDTE 413 Query: 307 --LGIAINNRLERAAA 320 L A+ NRL +AA Sbjct: 414 GDLAAAVMNRLRKAAG 429 >gi|121698888|ref|XP_001267839.1| translation initiation protein Sua5 [Aspergillus clavatus NRRL 1] gi|119395981|gb|EAW06413.1| translation initiation protein Sua5 [Aspergillus clavatus NRRL 1] Length = 433 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 103/396 (26%), Positives = 171/396 (43%), Gaps = 82/396 (20%) Query: 5 SITDSNALRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 +++A+ +A + L + +P+A PTETVYGL D+ A++ +Y+ K+RP+ NPLI H Sbjct: 35 KTPEASAIEEAAQLLQTSDIPVAFPTETVYGLGADATRSAAVQGIYKAKQRPSDNPLIVH 94 Query: 64 VSDISMVKKHA----------------SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL 107 V + M+++ S+ + L + FWPGPLT++L S + + Sbjct: 95 VDSLEMLERLLNPAPMSPTRAMKTARHSIPAIYRPLIERFWPGPLTILLPNPSGSLLADE 154 Query: 108 STANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLI 166 TANL T RVP + LI PLA PSAN S + S T +H+ + I LI Sbjct: 155 VTANLTTFGVRVPASPLARLLIHVADRPLAAPSANASTKPSPTAAEHVY-HDLQGRIELI 213 Query: 167 IDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVE------LEYCVDETSTP 220 +DGG+ +G+EST+V+ +LRPGG+ IE ++ E + +D P Sbjct: 214 LDGGLCGVGVESTVVDGLSNPPA-VLRPGGVGIEEIRAVPGWENVQVAYQDGTLDVKEIP 272 Query: 221 QSPGMLKSHYAPRSQVRLRAIHVNPREAL------------------------------- 249 ++PGM HY+P+++V L + Sbjct: 273 RAPGMKYRHYSPKARVVLFDAGSHEEYVAKYILKDLEDTAVGVHMIGVVRTRQWKRGLGL 332 Query: 250 -----IRFGNVPIKNIENAII------------------SLNLSKTGKLKEAAFNLFNYM 286 I+ PI ++ N ++ + + ++ A LF+ + Sbjct: 333 VSEENIQKTLKPIPSLANDLVGFSVPVKDRVKNREITKEAFDCCLGDSMESIARGLFSAL 392 Query: 287 KIADDSGASSIAFSSIPN--HGLGIAINNRLERAAA 320 + D+ I + + L A+ NRL +AA Sbjct: 393 RAMDEMEVDVIYVEGVSDSQGDLAAAVMNRLRKAAG 428 >gi|16127620|ref|NP_422184.1| Sua5/YciO/YrdC family protein [Caulobacter crescentus CB15] gi|221236437|ref|YP_002518874.1| Sua5/YciO/YrdC/YwlC family protein [Caulobacter crescentus NA1000] gi|13425098|gb|AAK25352.1| Sua5/YciO/YrdC family protein [Caulobacter crescentus CB15] gi|220965610|gb|ACL96966.1| Sua5/YciO/YrdC/YwlC family protein [Caulobacter crescentus NA1000] Length = 325 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 119/304 (39%), Positives = 168/304 (55%), Gaps = 11/304 (3%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L AG + +PTETVYGL ++ +P A+ ++E K RP NPLI HV+D+ + A D Sbjct: 30 LRAGGLVILPTETVYGLGANAADPAAVAAIFEAKGRPRFNPLIAHVADLETAARIAVFDD 89 Query: 79 LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAI 137 + LA+ FWPGPLT+V + + L+ A L T RVP ++ ++ +G + Sbjct: 90 RAHALAREFWPGPLTIVAPIRDPEAVCDLARAGLDTVAIRVPGHPLSRAVLAAFGGAVVA 149 Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197 PSANRSG+ S T ++ + + +DGG +GLEST+V+V E +VR+LRPG + Sbjct: 150 PSANRSGRPSPTTYDDAMAET-GDKAAAHLDGGPCAVGLESTVVSVL-EGEVRLLRPGAV 207 Query: 198 EIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPI 257 L++ + E D +SPG L HYAP + VR+ A EA + FG P Sbjct: 208 TRVQLQQIVGRLAEAQDDAK---RSPGRLALHYAPDAPVRINAKTPEAGEAYLAFGPWP- 263 Query: 258 KNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLER 317 + NLS TG L EAA NLF +++ AD S+IA + IP GLG AIN+RL R Sbjct: 264 ----ESPRVFNLSPTGDLAEAAANLFAFLRAADRIRPSAIAVAPIPEEGLGEAINDRLRR 319 Query: 318 AAAP 321 AA Sbjct: 320 AAGY 323 >gi|164427896|ref|XP_001728416.1| hypothetical protein NCU11234 [Neurospora crassa OR74A] gi|157071926|gb|EDO65325.1| conserved hypothetical protein [Neurospora crassa OR74A] Length = 449 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 112/391 (28%), Positives = 169/391 (43%), Gaps = 84/391 (21%) Query: 12 LRKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 +R+A L +P+A PTETVYGL D+ A++ +Y K RP+ NPLI HV D+SM+ Sbjct: 57 IREAAHHLRTTDIPVAFPTETVYGLGADATRSAAVKGIYAAKGRPSDNPLIVHVCDLSML 116 Query: 71 KKHAS------------VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 + S + + L FWPGPLT++L S + + P TA L T R Sbjct: 117 RSFISPSFSSAGDEEDPIPAIYHPLITRFWPGPLTILLPNPSPSLLAPEVTAGLPTFGCR 176 Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 +P + LI+ PLA PSAN S + S T +H+L + I LI+DGG +G+E Sbjct: 177 MPASALARSLIKLANAPLAAPSANASTKPSPTAAQHVL-DDLRGRIALILDGGSCSVGVE 235 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAISVE-------LEYCVDETSTPQSPGMLKSHY 230 ST+V+ C V +LRPGG+ +E ++ E + V + P++PGM HY Sbjct: 236 STVVDGLCSPPV-VLRPGGVSLEEIRECKGWEGVEKAYKDQAEVGGKTAPRAPGMKYKHY 294 Query: 231 APRSQVRLRAIHVNPRE-------------------------ALIRFGNVPIKNI--ENA 263 +P+++V L RE A+IR G P+ Sbjct: 295 SPKARVVLYEAEGGRREVPKADVREAVEAAGEEEGKGNVKSVAVIRTGRWPVAGGLRSQG 354 Query: 264 IISLNLSKTGKLKE---------------------------------AAFNLFNYMKIAD 290 + + +G + E A LF ++ D Sbjct: 355 LDDVAAKDSGDVAETGFAVREGQWLDEDGTTVLARLLEIDLGNDVKGVAHGLFAALRELD 414 Query: 291 DSGASSIAFSSIPN-HGLGIAINNRLERAAA 320 GA I + + + A+ NRL +AA+ Sbjct: 415 RRGADVIFVEGVSDGDDIAAAVMNRLRKAAS 445 >gi|87198152|ref|YP_495409.1| translation factor SUA5 [Novosphingobium aromaticivorans DSM 12444] gi|87133833|gb|ABD24575.1| translation factor SUA5 [Novosphingobium aromaticivorans DSM 12444] Length = 315 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 119/314 (37%), Positives = 178/314 (56%), Gaps = 12/314 (3%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D++ L A + + AG +A+PTETVYGLA + + A+ +Y K RP NPLI HV D+ Sbjct: 13 DNHGLEHAAQVIAAGGTVAVPTETVYGLAARADDDAAVAGIYRAKGRPDFNPLIVHVPDV 72 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + + A D + LA FWPGPLT+VL + +A L T R P + Sbjct: 73 TAAEGLAVFDKRARALANAFWPGPLTMVLPRREGAALASAVSAGLPTVALRCPAHPVMQA 132 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L++ G PLA PSANRSG +S T+ H+ ++S+ + + LI+DGG ++ G+ESTIV ++ + Sbjct: 133 LLKNCGLPLAAPSANRSGGVSPTSAAHV-AASLGQRVDLILDGGETRQGIESTIVGMRDD 191 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246 ILRPG + ++ + + + ++ ++PG L SHYAP VRL A Sbjct: 192 GTWAILRPGPITEASIAAVLGGKSDVVT--SAKIEAPGQLASHYAPGKPVRLNATQAGEG 249 Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306 E LI FG+V + +NLS +G L EAA L++ + + + +IA + IP+ G Sbjct: 250 EFLIGFGSV--------VGDVNLSTSGDLAEAAARLYSCLHLGAAASEPAIAVAPIPDEG 301 Query: 307 LGIAINNRLERAAA 320 +G AIN+RL RAAA Sbjct: 302 IGTAINDRLRRAAA 315 >gi|283471333|emb|CAQ50544.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus ST398] Length = 348 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 86/324 (26%), Positives = 149/324 (45%), Gaps = 18/324 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + + G I +PTETVYGLA ++ + A+ ++YE K RP+ NPLI H+ +K Sbjct: 21 INELKDIVLNGGLIGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKDQLK 80 Query: 72 KH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIE 129 ++D L + FWPGP++ +L L + + L + R+P ++L++ Sbjct: 81 DFTYTLDARVEKLMQAFWPGPISFILPLKPGY-LCRKVSGGLSSVAVRMPSHSVGRQLLQ 139 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 PLA PSAN SG+ S T H+ + I I+ S+ GLEST+++ Sbjct: 140 IINEPLAAPSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDCTS-FPY 197 Query: 190 RILRPGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRL------RAIH 242 +I RPG + + + + + ++T P +PGM HY+P + + + + + Sbjct: 198 KIARPGSITAAMITDILPNSITHADYNDTEQPIAPGMKYKHYSPNTPLTIITDIESKIGN 257 Query: 243 VNPREALIRF----GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSI 297 + I F V E I L +K+A+ NL++ + D+ S+ Sbjct: 258 DGKDWSSIAFIVPSNKVTFIPSEAQFIQL-CQDDNDVKQASHNLYDVLHSLDENENISAA 316 Query: 298 AFSSIPNHGLGIAINNRLERAAAP 321 + AI NR+ +AA Sbjct: 317 YIYGFELNDNTEAIMNRMLKAAGN 340 >gi|325982712|ref|YP_004295114.1| Sua5/YciO/YrdC/YwlC family protein [Nitrosomonas sp. AL212] gi|325532231|gb|ADZ26952.1| Sua5/YciO/YrdC/YwlC family protein [Nitrosomonas sp. AL212] Length = 346 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 103/331 (31%), Positives = 158/331 (47%), Gaps = 19/331 (5%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 +S + + A + L G +A PTETVYGL D NP AI ++Y+IK+RP +PLI H Sbjct: 13 LSSVQRDQITAAAQILRTGGTVAFPTETVYGLGADVTNPIAIDKIYKIKQRPTHHPLIVH 72 Query: 64 VSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 + +IS + A + + LA FWPGPLTL+L + I T T R P Sbjct: 73 IGNISHLHYWAKAIPDSAWKLAHHFWPGPLTLILPR--SDRIPDNVTGGQDTVGIRFPAH 130 Query: 123 -FTKKLIETYG--HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 L+ G LA PSANR G+IS T H+ + + +I+DGG +GLEST Sbjct: 131 PVALALLRALGPEKALAAPSANRFGRISPTLAAHV-HQELGNVVDMILDGGACDVGLEST 189 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQVRL 238 I++ + +ILRPG + + L+ A++ + ++ G L +HYAP + +R+ Sbjct: 190 ILSFH-DGIPQILRPGSITLSELEAALNSPVILAHHINNQLIRTSGSLPAHYAPTTPLRV 248 Query: 239 RAIHVNPREALI------RFGNVPIKNIENAIISLNL----SKTGKLKEAAFNLFNYMKI 288 + + A I R + NI+ S L S L+ ++ Sbjct: 249 YSNTQIWQHAFILAAKNLRVLVITWSNIDKPKFSNQLIEQFSMPEDPVAYGQQLYAKLRQ 308 Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 D + + S P+H +AI +RL+RA+ Sbjct: 309 FDQAEFDYMLIESPPDHPNWLAIADRLQRAS 339 >gi|237745647|ref|ZP_04576127.1| translation factor SUA5 [Oxalobacter formigenes HOxBLS] gi|229376998|gb|EEO27089.1| translation factor SUA5 [Oxalobacter formigenes HOxBLS] Length = 344 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 97/334 (29%), Positives = 157/334 (47%), Gaps = 27/334 (8%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + +++ + A L++G +A PTETVYGL D+ NP A+ +Y +K RPA +PLI HV+ Sbjct: 1 MKNADDILAAARILESGRLVAFPTETVYGLGGDAENPAAVAAIYALKNRPASHPLIVHVA 60 Query: 66 DISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 S + + + + L FWPGPLTL+L S + P + R P Sbjct: 61 SGSDIAYWSDRIPDEARKLMAAFWPGPLTLILKRASH--VLPDVAGGQDSVGLRCPSHPV 118 Query: 125 KKLI----ETYGHPLAIPSANRSGQISITNVKHILSSSICK-EIPLIIDGGISKIGLEST 179 + + + +A PSANR G +S T +H+ + I+DGG S++G+EST Sbjct: 119 AQALLGLFKQGRGGVAAPSANRFGHVSPTMAQHVRDEFGDDPRLGAILDGGQSEVGIEST 178 Query: 180 IVNVQ---CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQV 236 I+++ V +LRPG + + I + V + P++ G L SHYAPR+ V Sbjct: 179 ILDLSRIETAGPV-LLRPGKIGASQIAEVIG--MMPKVPDNGAPRASGTLASHYAPRTPV 235 Query: 237 -----------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNY 285 +R R AL+ + ++P + + L + + L+ Sbjct: 236 AVIPSDKLLQLLVRLEENGHRVALLHYSSLPASRKMSLAGEVGLYCAPDV--YSHQLYAS 293 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 ++ D SGA I + P +N+RL+RAA Sbjct: 294 LRKLDRSGADVILVEATPETETWKGVNDRLKRAA 327 >gi|213410030|ref|XP_002175785.1| SUA5/yciO/yrdC family protein [Schizosaccharomyces japonicus yFS275] gi|212003832|gb|EEB09492.1| SUA5/yciO/yrdC family protein [Schizosaccharomyces japonicus yFS275] Length = 402 Score = 293 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 108/368 (29%), Positives = 167/368 (45%), Gaps = 54/368 (14%) Query: 3 IMSITDSNALRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 I S AL +A L +A PTETVYGL D+R A+ +Y+ K RPA NPLI Sbjct: 33 IHSKETEIALEEASSILHQKDGIVAFPTETVYGLGADARKSEAVLNIYKAKNRPADNPLI 92 Query: 62 CHVSDISMVKKHAS----------------VDPLSLH-LAKLFWPGPLTLVLDLLST--T 102 H+ + + + PL L +WPGP++++L + T + Sbjct: 93 THIGSLKQLSELIDSTTQKNKLKGDSGLWENIPLVYKPLIDRYWPGPMSILLPIEGTEGS 152 Query: 103 DIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICK 161 + + TA T R+P LI PLA PSAN S + S T H+ + Sbjct: 153 PVSKVVTAGQSTFAVRMPEHPVALALILKSKAPLAAPSANASTRPSPTLAAHVF-HDLNG 211 Query: 162 EIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISV--------ELEYC 213 ++PLI+DGG +GLEST+VN C+ V ILRPGG+ +E ++ V + Sbjct: 212 KLPLILDGGPCGVGLESTVVNGLCDPPV-ILRPGGISLEDIQSCGGVWSRTVVYKPTDDV 270 Query: 214 VDETSTPQSPGMLKSHYAPRSQVRLRAIHVN--------------------PREALIRFG 253 ++ PQ+PGM HY+P ++V L P+ ++ Sbjct: 271 EKKSFVPQTPGMKYRHYSPTAKVLLFEGMSEAEANDILQNDYLHANQNTKPPKIGVLTSC 330 Query: 254 NVPIKNIENAI-ISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAIN 312 ++ + + +S+ L +TG KE NLF+ ++ D+ I + + G+AI Sbjct: 331 RWNVEKFSDMVSVSMCLGRTG--KEIRRNLFSMIRDMDEKQIDIILVEGVESDHEGLAIM 388 Query: 313 NRLERAAA 320 NRL +AA+ Sbjct: 389 NRLGKAAS 396 >gi|48478016|ref|YP_023722.1| Sua5 superfamily-related protein [Picrophilus torridus DSM 9790] gi|48430664|gb|AAT43529.1| Sua5 superfamily-related protein [Picrophilus torridus DSM 9790] Length = 337 Score = 293 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 94/329 (28%), Positives = 154/329 (46%), Gaps = 14/329 (4%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M ++ D + ++ A + + G + PTETVYGL ++ + A +++ K RPA NPL Sbjct: 1 MTLVLKPDDSGIKIAADIIRKGGTVVFPTETVYGLGANALSSEASAKIFRAKDRPADNPL 60 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 I VS+ +MVK + +D L + + WP PLTL+L + + + TA + T C R P Sbjct: 61 IVTVSNFNMVKDVSYIDCKLLKIMEGVWPAPLTLLL--KKKSIVPDIVTAGMDTVCVRFP 118 Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 +LI G P+A PSAN + + SI + K + + + IID G + G+EST Sbjct: 119 KNEIALRLISEAGVPVAAPSANIATRPSIVDSKDAI-DELDGRVDAIIDAGRVEYGVEST 177 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISV----ELEYCVDETSTPQSPGMLKSHYAPRSQ 235 I++ E +LRPG +E ++R + E++ +PGM HYAP + Sbjct: 178 IIDATVE-PYNLLRPGAFPVEEIERLFGKININPVARGYKESNIALTPGMKYRHYAPSKK 236 Query: 236 VRLRAIHVNPREALI-----RFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD 290 + L + R + F + + + EAA NLF ++ D Sbjct: 237 LILIENIDDFRSFVSSDRARDFLALCSSENSKYVKYDKIILGRDAYEAAHNLFYDFRLLD 296 Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAA 319 S + P G+G + NR+ +A+ Sbjct: 297 RSDKQYGVIQAFPETGIGFGLMNRIRKAS 325 >gi|323439335|gb|EGA97059.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus O11] gi|323442456|gb|EGB00085.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus O46] Length = 357 Score = 293 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 86/323 (26%), Positives = 151/323 (46%), Gaps = 16/323 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + + G I +PTETVYGLA ++ + A+ ++YE K RP+ NPLI H+ +K Sbjct: 30 INEIKDIVLNGGLIGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKVQLK 89 Query: 72 KH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIE 129 ++DP L + FWPGP++ +L L + + L + R+P ++L++ Sbjct: 90 DFTYTLDPRVEKLMQAFWPGPISFILPLKPGY-LCRKVSGGLSSVAVRMPSHSVGRQLLQ 148 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 PLA PSAN SG+ S T H+ + I I+ S+ GLEST+++ Sbjct: 149 IINEPLAAPSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAKQSEEGLESTVLDCTS-FPY 206 Query: 190 RILRPGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRL------RAIH 242 +I RPG + + + + + ++T P +PGM HY+P + + + + + Sbjct: 207 KIARPGSITAAMITEILPNSIAHADYNDTEQPIAPGMKYKHYSPNTPLTIITDIESKIGN 266 Query: 243 VNPREALIRFGNVPIKN--IENAIISLNLS-KTGKLKEAAFNLFNYMKIADD-SGASSIA 298 + I F K I + + L +K+A+ NL++ + D+ S+ Sbjct: 267 DGKDWSSIAFIVPSNKAAFIPSEAHFIQLCQDDNDVKQASHNLYDVLHSLDENENISAAY 326 Query: 299 FSSIPNHGLGIAINNRLERAAAP 321 + AI NR+ +AA Sbjct: 327 IYGFDLNDNTEAIMNRMLKAAGN 349 >gi|313891812|ref|ZP_07825417.1| Sua5/YciO/YrdC/YwlC family protein [Dialister microaerophilus UPII 345-E] gi|313119806|gb|EFR42993.1| Sua5/YciO/YrdC/YwlC family protein [Dialister microaerophilus UPII 345-E] Length = 345 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 109/341 (31%), Positives = 156/341 (45%), Gaps = 25/341 (7%) Query: 1 MQIMSIT-----DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP 55 M+ I S+ + K + G +A PTETVYGL ++ + A +++Y+ K RP Sbjct: 1 MKTKKINVNKKYYSDLVNKLGYIIRKGGLVAFPTETVYGLGGNALSSKAAKKIYKAKGRP 60 Query: 56 AMNPLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT 114 + NPLI HV+D S VK ++ L L L+WPGPLT+V + I ++ L T Sbjct: 61 SDNPLIVHVADKSQVKNFVKNINDLEHKLMDLYWPGPLTIVFE--KKDIIPYETSGGLDT 118 Query: 115 ACFRVPCGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173 R P + LI PLA PSAN S + S T K +L+ + I +ID G SK Sbjct: 119 VAIRCPDNNATRALIRAAKVPLAGPSANISTRPSPTYAKSVLND-LDGRINAVIDNGDSK 177 Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDE-TSTPQSPGMLKSHYAP 232 IGLESTIV V E K+ I RPG + E L L+ + + P++PGM HYAP Sbjct: 178 IGLESTIVAV-NEGKIIIYRPGAITQEMLSELAPTSLDTALKKSNEKPKAPGMKYRHYAP 236 Query: 233 RSQVR-------------LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAA 279 + + L + N + + + I K K A Sbjct: 237 SAPLEIYVGNENKVEESILEVSNENDKIYGFFVSKETAEKLPKNSIVFCWGKRSDKKSMA 296 Query: 280 FNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 NLF + + I N G+G+AI NRL++A+ Sbjct: 297 RNLFKGLLFFNSQKIDQIIGEGTDNKGIGMAIMNRLKKASG 337 >gi|56475496|ref|YP_157085.1| putative translation factor (SUA5) [Aromatoleum aromaticum EbN1] gi|56311539|emb|CAI06184.1| putative translation factor (SUA5) [Aromatoleum aromaticum EbN1] Length = 351 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 107/347 (30%), Positives = 164/347 (47%), Gaps = 36/347 (10%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 + N +R+A L AG + +PTETVYGLA D+ N A+ +++ K RPA +PLI Sbjct: 6 VAPAIPDNEIRRAAGLLHAGELVGMPTETVYGLAADALNVAAVGKIFAAKGRPADHPLIV 65 Query: 63 HVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 H+ D + + A + + LA+ FWPGPLTL+L + + T T RVP Sbjct: 66 HLPDAGHLARWAREIPDDAFALARAFWPGPLTLILKRQHS--VPDALTGGQDTVGLRVPD 123 Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L++T+ +A PSANR G+IS T +H+ + +I LI+DGG +G+ESTI Sbjct: 124 HPVALALLQTFDSGIAAPSANRFGRISPTTAEHV-RQELGDKIALILDGGPCVVGIESTI 182 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETST------------PQSPGM 225 +++ + +ILRPG + E + R I E S P+ G Sbjct: 183 LDLSRDTP-QILRPGAISAEDIARVIGCPPRSRPIPTGEASAGDHRDGATGDGEPRVSGS 241 Query: 226 LKSHYAPRSQVRLRAIHV-----------NPREALIRFGNVPIKNIENAIISLNLSKTGK 274 L +HYAPR+ +++ A R A++ +G ++ + L G Sbjct: 242 LSAHYAPRTPLQMTAASQLAELAATLAAEGSRVAVLAYGCQDPQDARLIWRAAPLDAAG- 300 Query: 275 LKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 A L+ ++ D GA I + P A+N+RL RAAA Sbjct: 301 ---YAHALYANLRDLDACGADFIVVETPPATPDWQAVNDRLRRAAAG 344 >gi|294940148|ref|XP_002782688.1| sua5, putative [Perkinsus marinus ATCC 50983] gi|239894568|gb|EER14483.1| sua5, putative [Perkinsus marinus ATCC 50983] Length = 356 Score = 292 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 111/337 (32%), Positives = 167/337 (49%), Gaps = 29/337 (8%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 + + L +A E L G +A PTETVYGL ++ + A+ +Y+ K RP+ NPLI H + Sbjct: 22 EKHKLIRAGELLREGELVAFPTETVYGLGANALSDEAVAGIYQAKGRPSDNPLIVHTTCA 81 Query: 68 SMVKKHAS--VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 + + + DP+++ LAK FWPGPLT+VL + S + I TA L T RVP Sbjct: 82 ADALRLSQTPEDPIAVKLAKTFWPGPLTMVLPVGSNSGIAKRVTAGLDTVGLRVPSHPVA 141 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSIC------KEIPLIIDGGISKIGLES 178 +IE G P+A PSAN SG+ S T H+ KE+ +I+DGG G+ES Sbjct: 142 HAVIEAAGVPIAAPSANTSGKPSPTEAFHVYEDMEHNADAGRKEVSMIVDGGACDHGVES 201 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAIS----VELEYCVDETSTPQSPGMLKSHYAPRS 234 T+V + V ILRPG + +E L+ + V++ + P++PGM HYAP++ Sbjct: 202 TVVRIMDSSHVVILRPGAVTLEQLRACLEGMAVVDIPKPLAGAECPRAPGMKYRHYAPQA 261 Query: 235 QVRLRAIHV---------NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNY 285 V L P +I F ++ + N +L L A +F+ Sbjct: 262 MVDLVYDKDEILREAALSEPHTVVIAFDDLNL----NGARVRSLGPRSDLSVACHRIFSL 317 Query: 286 MKIADDS-GASSIAF-SSIPN-HGLGIAINNRLERAA 319 + DDS A I + G+G A+ NR+E+A+ Sbjct: 318 FRECDDSLHAKRIVLDARFDQTTGIGRALFNRIEKAS 354 >gi|307294299|ref|ZP_07574143.1| Sua5/YciO/YrdC/YwlC family protein [Sphingobium chlorophenolicum L-1] gi|306880450|gb|EFN11667.1| Sua5/YciO/YrdC/YwlC family protein [Sphingobium chlorophenolicum L-1] Length = 318 Score = 292 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 136/313 (43%), Positives = 185/313 (59%), Gaps = 12/313 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S ALR+A + AG P+A+PTETVYGLA D+ + A+ +Y K RP+ NPLI HVSD Sbjct: 17 SEALREAALLIRAGEPVAVPTETVYGLAADATDSNAVAAIYTAKGRPSFNPLIVHVSDRE 76 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKL 127 M + A P++ LA FWPG LTLVL + + + + PL A L T R+P + L Sbjct: 77 MAGRLAEFSPVADRLADRFWPGALTLVLPVRADSGLSPLVMAGLPTVALRLPAHPAMRAL 136 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I G PLA PSANRSG IS T +H+L +S+ +I +I+D G + GLESTI + + Sbjct: 137 IRESGRPLAAPSANRSGSISPTRAEHVL-ASLNGKIRMILDEGPTSEGLESTIAAPESD- 194 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 ++R+LRPG + L+ A + + D ++PG L+SHYAP VRL A+ E Sbjct: 195 RIRLLRPGPVTAAMLEEASRLPVVAGAD-NGKIEAPGQLESHYAPSKPVRLNALKAEKDE 253 Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307 LI FG +P +NLS L+EAA +LF + +AD S A IA + I N G+ Sbjct: 254 YLIGFGLMPCH--------VNLSPDADLREAAAHLFAALHMADASTAERIAVAPILNEGI 305 Query: 308 GIAINNRLERAAA 320 G+AIN+RL RAAA Sbjct: 306 GVAINDRLRRAAA 318 >gi|50302405|ref|XP_451137.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49640268|emb|CAH02725.1| KLLA0A03135p [Kluyveromyces lactis] Length = 404 Score = 292 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 104/364 (28%), Positives = 164/364 (45%), Gaps = 53/364 (14%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 T+ N L A D +A PTETVYGL + N +++ +Y+ K RP+ NPLI H+S Sbjct: 40 TEKNLLEAAGIIRDTSETVAFPTETVYGLGGSALNDESVKNIYKAKNRPSDNPLITHISS 99 Query: 67 ISMV------------KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTAN 111 +S + K + V + L + WPGPLT++L + ++ + L+TAN Sbjct: 100 LSQLNRVIYSDISDDCKPLSHVPEIYHPLVEKLWPGPLTILLSIPDGSNRNTLSKLTTAN 159 Query: 112 LKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 T R+P + LI P+A PSAN S + S T +H+ + IPLI+DGG Sbjct: 160 QPTFACRIPANPIARALIALSDTPIAAPSANASTRPSPTTAEHVF-HDLNGRIPLILDGG 218 Query: 171 ISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS-------VELEYCVDETSTPQSP 223 +G+EST+V+ + +LRPGG E + VE + + + ++P Sbjct: 219 KCSVGVESTVVDGLVTPPM-LLRPGGFTYENILNIGGPLWKECLVETKVNIKDDEKVKTP 277 Query: 224 GMLKSHYAPRSQVRLRAIHVN-------------------------PREALIRFGNVPIK 258 GM HY+P+++V L + + A + ++ Sbjct: 278 GMKYRHYSPKAKVILLVPEGDSQIISSERLGRLKSLVDKEIIQQGAKKVAFLNSLHLNKH 337 Query: 259 NIENAIISLNLSKTGKLKEAAFNLFNYMKIADDS-GASSIAFSSIPNHGLGIAINNRLER 317 I+ I +L TG KE NLF ++ D+ I + G+AI NRL + Sbjct: 338 FIDGKCIHESLGTTG--KEIQANLFALLRKVDEEDNVDLIVVEGTEANEEGLAIMNRLRK 395 Query: 318 AAAP 321 AA+ Sbjct: 396 AASN 399 >gi|224477104|ref|YP_002634710.1| hypothetical protein Sca_1619 [Staphylococcus carnosus subsp. carnosus TM300] gi|222421711|emb|CAL28525.1| conserved hypothetical protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 348 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 91/332 (27%), Positives = 152/332 (45%), Gaps = 15/332 (4%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 ++ S A+ + E G +AIPTETVYGL ++++ ++++YE K RP+ NPLI Sbjct: 12 EVDSPNAKAAIEEIAEVYREGELVAIPTETVYGLGANAKDDATVKKIYEAKGRPSDNPLI 71 Query: 62 CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 H+ D + + + + L +FWPGP++ +L L + + L + R+P Sbjct: 72 VHIYDEAQMDDFITEIPEKAQQLMDVFWPGPISFILPLKEGF-LCKRVSGGLSSIAVRMP 130 Query: 121 CGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + +++ P+A PSAN SG+ S T +H+ + + ++ I++G S+ GLEST Sbjct: 131 SHPVGRAILKAVRLPIAAPSANLSGRPSPTTFEHV-NHDLNGKVAGIVNGDQSEEGLEST 189 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELE-YCVDETSTPQSPGMLKSHYAPRSQVRL 238 +++ + RI RPG + E +++ I ++ V T P +PGM HY+P + V + Sbjct: 190 VLDCT-QYPFRIARPGAITAEMIEQVIPGSIDTDSVLNTDKPIAPGMKYKHYSPDTPVAM 248 Query: 239 -------RAIHVNPREALIRFGNVPIKNIENAIISLNLS-KTGKLKEAAFNLFNYMKIAD 290 N L K I + LS LK A NL+ + D Sbjct: 249 LTNLNTAITSQNNWESTLFAVPATLRKYIPENAVYRELSVDETDLKNANHNLYQILHELD 308 Query: 291 -DSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 D+ A NRLE+A Sbjct: 309 TDTNIEQGYIFKFDKTDESNAFLNRLEKATGN 340 >gi|329121079|ref|ZP_08249710.1| Sua5/YciO/YrdC/YwlC family protein [Dialister micraerophilus DSM 19965] gi|327471241|gb|EGF16695.1| Sua5/YciO/YrdC/YwlC family protein [Dialister micraerophilus DSM 19965] Length = 345 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 109/341 (31%), Positives = 156/341 (45%), Gaps = 25/341 (7%) Query: 1 MQIMSIT-----DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP 55 M+ I S+ + K + G +A PTETVYGL ++ + A +++Y+ K RP Sbjct: 1 MKTKKINVNKKYYSDLVNKLGYIIRKGGLVAFPTETVYGLGGNALSSKAAKKIYKAKGRP 60 Query: 56 AMNPLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT 114 + NPLI HV+D S VK ++ L L L+WPGPLT+V + I ++ L T Sbjct: 61 SDNPLIVHVADKSQVKNFVKNINDLEHKLMDLYWPGPLTIVFE--KKDIIPYETSGGLDT 118 Query: 115 ACFRVPCGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173 R P + LI PLA PSAN S + S T K +L+ + I +ID G SK Sbjct: 119 VAIRCPDNNATRALIRAAKVPLAGPSANISTRPSPTYAKSVLND-LDGRINAVIDNGDSK 177 Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDE-TSTPQSPGMLKSHYAP 232 IGLESTIV V E K+ I RPG + E L L+ + + P++PGM HYAP Sbjct: 178 IGLESTIVAV-NEGKIIIYRPGAITQEMLSELAPTSLDTALKKSNEKPKAPGMKYRHYAP 236 Query: 233 RSQVR-------------LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAA 279 + + L + N + + + I K K A Sbjct: 237 SAPLEIYVGNENKVEESILEVSNENDKIYGFFVSKETAEKLPKNSIVFCWGKRSDKKSMA 296 Query: 280 FNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 NLF + + I N G+G+AI NRL++A+ Sbjct: 297 RNLFKGLLFFNSKKIDQIIGEGTDNKGIGMAIMNRLKKASG 337 >gi|254582671|ref|XP_002499067.1| ZYRO0E02882p [Zygosaccharomyces rouxii] gi|238942641|emb|CAR30812.1| ZYRO0E02882p [Zygosaccharomyces rouxii] Length = 414 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 109/373 (29%), Positives = 160/373 (42%), Gaps = 59/373 (15%) Query: 3 IMSITDSNALRKACEFLDAG-LPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 I L +A + + P+A PTETVYGL S + A++ +Y K RP+ NPLI Sbjct: 40 ITDPISEKNLLEAAKIIRGNLEPVAFPTETVYGLGGSSLSDEAVKSIYRAKNRPSDNPLI 99 Query: 62 CHVSDISMVKK----------HASVDPLSLHLAKLFWPGPLTLVLDL-LSTTDIHPLSTA 110 HVS I + + ++ L WPGPLT++L + L T+ + L+TA Sbjct: 100 THVSSIDQLNRKIYQEKHSSLFQNIPNSYHPLISKLWPGPLTILLPVPLKTSALSKLTTA 159 Query: 111 NLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169 + T R+P + LI P+A PSAN S + S T H+ + IPLI+DG Sbjct: 160 DQPTFAVRIPSNPIARALIALSDTPIAAPSANASTRPSPTMASHVY-HDLKGRIPLILDG 218 Query: 170 GISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS-------VELEYCVDETSTPQS 222 G K+G+EST+V+ + + +LRPGG E + VE V E ++ Sbjct: 219 GPCKVGVESTVVDGLSKPPL-LLRPGGFTYEQIVELGGQDWKDCRVERRKVVAEGEQVRT 277 Query: 223 PGMLKSHYAPRSQVRL-----------------------------RAIHVNPREALIRFG 253 PGM HYAP ++V L I + G Sbjct: 278 PGMKYKHYAPSAKVILLVPKPQRTDSDRIEELKRLISQELQNEDANTIKKLAILTSLHLG 337 Query: 254 NVPIKNIENAI-----ISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSIAFSSIPNHGL 307 I+++ I + L TG +E NLF ++ D+ + I I Sbjct: 338 ATEIQDLTVGDSKIKPIVVKLGNTG--EEIQANLFAALRQVDEIDNVNLIFVEGISEDRE 395 Query: 308 GIAINNRLERAAA 320 G+AI NRL +AA Sbjct: 396 GLAIMNRLRKAAG 408 >gi|229515463|ref|ZP_04404922.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae TMA 21] gi|229347232|gb|EEO12192.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae TMA 21] Length = 328 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 93/323 (28%), Positives = 162/323 (50%), Gaps = 11/323 (3%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 Q+ ++T ++ + A + L G +AIPTETVYGLA D+ P A+++++ K RPA +PLI Sbjct: 13 QLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPLI 71 Query: 62 CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 H+ + + A + P + LA+ FWPGPLTL+L + P+ T L++ RVP Sbjct: 72 VHLGSAEQLSEWATDIAPEAYQLAEAFWPGPLTLLLP--KAKQVSPVVTGGLESVGIRVP 129 Query: 121 CGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 +++T+ +A PSAN ++S T+ + +L + + ++DGG + GLEST Sbjct: 130 AHPVLLDILKTHRLAVAAPSANPYKKLSPTSAQQVL-DGLNGRLAAVLDGGECQHGLEST 188 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 IV++ K R+LR G + L + E+ + PG + SHY P++++R+ Sbjct: 189 IVDLTS-KPFRVLRAGPITASELSAVLGQEV--LQPQVHQVAVPGNVDSHYQPKTRLRVI 245 Query: 240 AI--HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297 + + I+ + + ++ + L K L+ + D G I Sbjct: 246 DVLENELATAGNIKIALLHLSELQASEQRLLKPMPQDAKAYGQALYRSLAEVDKWGVDEI 305 Query: 298 AFSSIPNHGLGIAINNRLERAAA 320 P +A+++RL RAA+ Sbjct: 306 WLERPPQGEAWLAVHDRLRRAAS 328 >gi|156845519|ref|XP_001645650.1| hypothetical protein Kpol_541p35 [Vanderwaltozyma polyspora DSM 70294] gi|156116316|gb|EDO17792.1| hypothetical protein Kpol_541p35 [Vanderwaltozyma polyspora DSM 70294] Length = 422 Score = 292 bits (748), Expect = 6e-77, Method: Composition-based stats. Identities = 104/381 (27%), Positives = 162/381 (42%), Gaps = 63/381 (16%) Query: 2 QIMSITDSNALRKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 +I AL +A + +A PTETVYGL S N ++ +Y+ K RP+ NPL Sbjct: 39 KITDPETEAALLEAASIIRDTDNVVAFPTETVYGLGGSSLNDKSVLNIYKAKNRPSDNPL 98 Query: 61 ICHVSDISMVKK---------------HASVDPLSLHLAKLFWPGPLTLVLDLLS--TTD 103 I HVS I + + +++ P+ +L WPGPLT++L + + Sbjct: 99 ISHVSSIDQLNRKIYNNVSETNNPKSLLSNIPPIYHNLISKLWPGPLTILLPVPKEGNGN 158 Query: 104 IHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKE 162 + L+T N T R+P + LI P+A PSAN S + S T H+ + + Sbjct: 159 LSKLTTVNQPTFAVRIPSHPVARALIALSDTPIAAPSANASTRPSPTLASHVF-HDLNTK 217 Query: 163 IPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL-------KRAISVELEYCVD 215 IPLI+DGG +G+EST+++ C +LRPGG E + ++ VE + V Sbjct: 218 IPLILDGGACSVGVESTVIDGLCNPPA-LLRPGGFTYEQIVHLGGESWKSCKVENKKTVL 276 Query: 216 ETSTPQSPGMLKSHYAPRSQVRLRA----------------IHVNPREALIRFGNVPIKN 259 + ++PGM HY+P ++V L I ++ + + Sbjct: 277 KGEKVRTPGMKYRHYSPSAKVVLLVPSSPFNENTYLEKISRIISEEKDKTNVKKVAVLTS 336 Query: 260 IENAIISLNLSKTGKL------------------KEAAFNLFNYMKIADD-SGASSIAFS 300 ++ A I LS G E NLF ++ D+ I Sbjct: 337 LKLATIHSKLSNLGSYLNKADGIEINVQNLGNNGTEIQSNLFATLRTVDEVDNVDLILVE 396 Query: 301 SIPNHGLGIAINNRLERAAAP 321 I G+A+ NRLE+AA Sbjct: 397 GIEEDEEGLAVMNRLEKAAGG 417 >gi|119480771|ref|XP_001260414.1| translation initiation protein Sua5 [Neosartorya fischeri NRRL 181] gi|119408568|gb|EAW18517.1| translation initiation protein Sua5 [Neosartorya fischeri NRRL 181] Length = 433 Score = 292 bits (748), Expect = 6e-77, Method: Composition-based stats. Identities = 103/396 (26%), Positives = 166/396 (41%), Gaps = 82/396 (20%) Query: 5 SITDSNALRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 +S+A+ +A L + +P+A PTETVYGL D+ A++ +Y+ K+RP+ NPLI H Sbjct: 35 KTPESSAIEEAAHLLRTSDIPVAFPTETVYGLGADATRSAAVQGIYKAKQRPSDNPLIVH 94 Query: 64 VSDISMVKKHAS----------------VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL 107 + I M+++ + + + L + FWPGPLT++L S + + Sbjct: 95 IDSIEMLERLLNPASSSPTRTMRTARNTIPAIYQPLIERFWPGPLTILLHNPSGSLLAGE 154 Query: 108 STANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLI 166 TANL T R+P + LI PLA PSAN S + S T +H+ + I LI Sbjct: 155 VTANLTTFGVRMPASPLARLLIHVADRPLAAPSANASTKPSPTAAEHVY-HDLEGRIDLI 213 Query: 167 IDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL------EYCVDETSTP 220 +DGG +G+EST+V+ ILRPGG+ IE L+ E + +D P Sbjct: 214 LDGGPCGVGVESTVVDGLSNPPA-ILRPGGVGIEELRTVPGWENVQIAYHDGTLDVKEVP 272 Query: 221 QSPGMLKSHYAPRSQVRLR----AIHVNPREALIRFGNVPIKNIENAIISLNLSKTG--- 273 ++PGM HY+P+++V L + + + I+ ++ K G Sbjct: 273 RAPGMKYRHYSPKARVVLFCAGSSEEAIAKYVYKDLEDTAIRAHMIGVVRTRQWKRGLGL 332 Query: 274 -----------------------------------------------KLKEAAFNLFNYM 286 ++ A LF+ + Sbjct: 333 VSEEDIQKTLKPIPSLVDDLVCFSVPVKDKINNCEITKAAFDCHLGDNIESIARGLFSAL 392 Query: 287 KIADDSGASSIAFSSIPN--HGLGIAINNRLERAAA 320 + D+ I + + L A+ NRL +AA Sbjct: 393 RAMDEMEVDVIYVEGVSDSQGDLAAAVMNRLRKAAG 428 >gi|78187540|ref|YP_375583.1| Sua5/YciO/YrdC/YwlC [Chlorobium luteolum DSM 273] gi|78167442|gb|ABB24540.1| translation factor SUA5 [Chlorobium luteolum DSM 273] Length = 315 Score = 291 bits (747), Expect = 6e-77, Method: Composition-based stats. Identities = 105/323 (32%), Positives = 152/323 (47%), Gaps = 13/323 (4%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 MQ ITDS +A L+AG +A PTETVYGL P A+ L+ K RP+ NPL Sbjct: 1 MQTC-ITDSA--EEAARILNAGKIVAFPTETVYGLGAGIDFPEAVEGLFRAKGRPSDNPL 57 Query: 61 ICHVSDISMVK-KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I HVS + V+ A V + L + F+PGPLT+V + + TA L+T R Sbjct: 58 IVHVSSVEQVEMAAARVTTDARRLMERFFPGPLTIVFP--KSPRVPHSVTAGLETVGIRC 115 Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P ++ + P+A PSANRSG+ S T + + + I I+ G S+IGLES Sbjct: 116 PRHPVAREFLSRCCCPVAAPSANRSGRPSATTWQAV-QEDLDGRIDAILKGEASRIGLES 174 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAI-SVELEYCVDETSTPQSPGMLKSHYAPRSQVR 237 TIV+ V +LR G + +E L+ + S + E TP+SPG+ HYAP + + Sbjct: 175 TIVDCTGPHPV-MLRAGAVSLEELQSIVPSTTAARPLREGETPKSPGLKYPHYAPEATII 233 Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297 P + L+ A +LF++ + D S+I Sbjct: 234 PIEKEETPSPEGRAAYIGTAPAPKGMAFVEQCP---DLEAYARSLFHFFRECDRRAISTI 290 Query: 298 AFSSIPNHGLGIAINNRLERAAA 320 P G+G A+ +R+ RAA Sbjct: 291 YCELPPTAGIGRALLDRINRAAG 313 >gi|170740606|ref|YP_001769261.1| Sua5/YciO/YrdC/YwlC family protein [Methylobacterium sp. 4-46] gi|168194880|gb|ACA16827.1| Sua5/YciO/YrdC/YwlC family protein [Methylobacterium sp. 4-46] Length = 330 Score = 291 bits (746), Expect = 9e-77, Method: Composition-based stats. Identities = 126/307 (41%), Positives = 174/307 (56%), Gaps = 3/307 (0%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 E L AG +A PTETVYGL D+ + A+ +Y K RP NPLI H+ + + ++ Sbjct: 26 ELLRAGAVVAFPTETVYGLGGDATDGAAVAAIYAAKARPRFNPLIAHLPEAAAARREGVF 85 Query: 77 DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPL 135 + LA+ FWPGPLTLV+ + L+ A L + RVP + L+ G P+ Sbjct: 86 GAQASRLAEAFWPGPLTLVVPRAPEGSVCDLARAGLDSVALRVPAAPLARDLLRAVGRPI 145 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 A PSANRSG++S T +H+L + + I ++DGG +G+ESTIV + R+LRPG Sbjct: 146 AAPSANRSGRVSPTRAEHVL-ADLDGRIAALLDGGPCPVGVESTIVACLDDAP-RLLRPG 203 Query: 196 GLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNV 255 G+ E L+ + L + P SPG+L SHYAPR+ +RL A + P EA + FG Sbjct: 204 GVPREALEAVLGGPLRAAAPAGAAPVSPGLLASHYAPRAALRLDAAEIRPGEAALLFGGA 263 Query: 256 PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRL 315 + A L+LS G L EAA LF ++ D SGA++IA + IP GLG AI +RL Sbjct: 264 RPPGLAAAAARLDLSPRGDLAEAASRLFAALRTLDASGAATIAVTPIPREGLGEAIADRL 323 Query: 316 ERAAAPR 322 RAAAPR Sbjct: 324 ARAAAPR 330 >gi|319796432|ref|YP_004158072.1| sua5/ycio/yrdc/ywlc family protein [Variovorax paradoxus EPS] gi|315598895|gb|ADU39961.1| Sua5/YciO/YrdC/YwlC family protein [Variovorax paradoxus EPS] Length = 333 Score = 291 bits (746), Expect = 9e-77, Method: Composition-based stats. Identities = 101/337 (29%), Positives = 156/337 (46%), Gaps = 25/337 (7%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 I+ A+ +A L AG +A PTETVYGL D+ + A+ +++ K RPA +PLI Sbjct: 2 ILDGQSPEAIAEAVRMLRAGGLVAFPTETVYGLGADASSDMAVAGIFKAKGRPADHPLIV 61 Query: 63 HVS----DISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 HV+ + + A PL + L + FWPGPLTL++ + T Sbjct: 62 HVAAGMKGTEALSRFAQPLPLFAQKLVQAFWPGPLTLIVTRQPGVGTA--AAGGQDTIGL 119 Query: 118 RVPCG-FTKKLIETY---GHP-LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172 R P + L+E G P +A PSANR G++S T +H+ E ++DGG Sbjct: 120 RCPSHPVAQALLEACAEQGVPGVAGPSANRFGRVSPTTAQHVYEEF--GEAVPVVDGGAC 177 Query: 173 KIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL-EYCVDETSTPQSPGMLKSHYA 231 ++G+ESTIV+ V +LRPG + ++ A +L + V ET P++ G L++HYA Sbjct: 178 EVGIESTIVDCSRGAPV-LLRPGLITRAQIEAACGEKLSDRDVLETPDPRASGTLEAHYA 236 Query: 232 PRSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSK--------TGKLKEAAFNLF 283 P ++VRL + L G + SL +A LF Sbjct: 237 PNAKVRLMDAKAL-QTGLDVLGANAAHIAVWSRTSLRCRSQRVLQRRMPDDAAASAHQLF 295 Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ D G I + P+ + +RL+RA+A Sbjct: 296 AVLREFDAQGVKLIWVETPPDTPEWEGVRDRLQRASA 332 >gi|315660271|ref|ZP_07913126.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus lugdunensis M23590] gi|315494698|gb|EFU83038.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus lugdunensis M23590] Length = 344 Score = 291 bits (746), Expect = 9e-77, Method: Composition-based stats. Identities = 89/327 (27%), Positives = 149/327 (45%), Gaps = 15/327 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L + + G IA+PTETVYGL ++++ A+ ++YE K RP+ NPLI H+ D + Sbjct: 21 LDEIKHVYEQGGLIALPTETVYGLGANAKDQEAVTKIYEAKGRPSDNPLIVHIYDQQQLT 80 Query: 72 KHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIE 129 + L FWPGP++ +L L + T L + R+P + +++ Sbjct: 81 PFIETITDKVQILMNYFWPGPISFILPLKRGY-LCEKVTGGLDSIAVRMPSHPIGRAILK 139 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+A PSAN SG+ S T H+ + +I II+G S+ GLEST+++ Sbjct: 140 YVDLPIAAPSANTSGKPSPTTFDHVY-HDLNGKIDGIINGDQSEEGLESTVLDCTT-YPF 197 Query: 190 RILRPGGLEIETLKRAI-SVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH------ 242 +I RPG + + + ++ ++ P +PGM HYAP + V + + Sbjct: 198 KIARPGAITQSMINAILPDAVVDSNYNDMVRPIAPGMKYKHYAPDTPVTIVKMKGKHIPE 257 Query: 243 -VNPREALIRFGNVPIKNIENAIISLNLSKTG-KLKEAAFNLFNYMKIADDSG-ASSIAF 299 ++ A F V + I + + + L K +K A NL+ + D+ Sbjct: 258 IMDKEHAAFIFPEVYRQQIPSESLFIPLCKDDQDIKTANHNLYKILHDLDNMDHVHKAYI 317 Query: 300 SSIPNHGLGIAINNRLERAAAPRNQSQ 326 + AI NR+ +AAA R + Sbjct: 318 YGFDINDDTQAIMNRMLKAAANRMIGE 344 >gi|329851505|ref|ZP_08266262.1| SUA5 domain protein [Asticcacaulis biprosthecum C19] gi|328840351|gb|EGF89923.1| SUA5 domain protein [Asticcacaulis biprosthecum C19] Length = 304 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 104/310 (33%), Positives = 155/310 (50%), Gaps = 12/310 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + A L G I +PTETVYGL + +P A+ +++E K RP NPLI H+ + Sbjct: 3 VAAAIAALRNGDLIHLPTETVYGLGARADDPAAVVKVFEAKGRPRFNPLIVHIGSVESAA 62 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 +D +L LA FWPGPLTLV+ + T L+ A L + R+P +++ Sbjct: 63 AIGVMDERALALADTFWPGPLTLVVPVRDTVAACDLARAGLDSVALRLPSHPLALEVLRG 122 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 +G + PSANRSG+ S T L + + + +DGG ++G+EST+V++ + R Sbjct: 123 FGGGVVAPSANRSGRPSPTTQADSLEET-GTSVAVSLDGGACQVGVESTVVSLLGD--AR 179 Query: 191 ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALI 250 LR G + ++ I D+T +SPG L HYAP + V + A + Sbjct: 180 YLRAGAVTRAQIEAVIG---PLAADDTEGHRSPGRLSLHYAPDAPVHINMETPPLGAAYL 236 Query: 251 RFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIA 310 FG + A + LS EAA NLF+ ++ AD IA + IP G+G A Sbjct: 237 AFGP-----TDYAGPVIQLSANRDPAEAAANLFSGLREADRLNPVCIAIAPIPGDGIGEA 291 Query: 311 INNRLERAAA 320 IN+R+ RAA Sbjct: 292 INDRIRRAAG 301 >gi|71001138|ref|XP_755250.1| translation initiation protein Sua5 [Aspergillus fumigatus Af293] gi|66852888|gb|EAL93212.1| translation initiation protein Sua5 [Aspergillus fumigatus Af293] gi|159129334|gb|EDP54448.1| translation initiation protein Sua5 [Aspergillus fumigatus A1163] Length = 433 Score = 290 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 106/396 (26%), Positives = 172/396 (43%), Gaps = 82/396 (20%) Query: 5 SITDSNALRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 +S+A+ +A L + +P+A PTETVYGL D+ A++ +Y+ K+RP+ NPLI H Sbjct: 35 KTPESSAIEEAAHLLRTSDIPVAFPTETVYGLGADATRSAAVQGIYKAKQRPSDNPLIVH 94 Query: 64 VSDISMVKKHAS----------------VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL 107 + I M+++ + + + L + FWPGPLT++L S + + Sbjct: 95 IDSIEMLERLLNPASSSPTRTTRTAKNTIPAIYQPLIERFWPGPLTILLHNPSGSLLADE 154 Query: 108 STANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLI 166 TANL T R+P + LI PLA PSAN S + S T +H+ + I LI Sbjct: 155 VTANLTTFGVRMPASPLARLLIHVADRPLAAPSANASTKPSPTAAEHVY-HDLEGRINLI 213 Query: 167 IDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL------EYCVDETSTP 220 +DGG +G+EST+V+ K ILRPGG+ IE L+ E + +D P Sbjct: 214 LDGGPCGVGVESTVVDGLS-KPPAILRPGGVGIEELRTVPGWENVQIAYHDGNLDVKEVP 272 Query: 221 QSPGMLKSHYAPRSQVRLRAIHVNPREAL------------------------------- 249 ++PGM HY+P+++V L + E Sbjct: 273 RAPGMKYRHYSPKARVVLFCAGSSEEEIAKYVYKDLEDTAIRAHMIGVVRTRQWKRGLGL 332 Query: 250 -----IRFGNVPIKNIENAIISLNLSKTG------------------KLKEAAFNLFNYM 286 I+ PI ++ + ++ ++ G ++ A LF+ + Sbjct: 333 VSEEDIQKTLKPIPSLVDDLVCFSVPVKGRINNREIARAAFDCHLGDNIESIARGLFSAL 392 Query: 287 KIADDSGASSIAFSSIPN--HGLGIAINNRLERAAA 320 + D+ I + + L A+ NRL +AA Sbjct: 393 RAMDEMEVDVIYVEGVSDSQGDLAAAVMNRLRKAAG 428 >gi|254291504|ref|ZP_04962295.1| conserved hypothetical protein [Vibrio cholerae AM-19226] gi|150422568|gb|EDN14524.1| conserved hypothetical protein [Vibrio cholerae AM-19226] Length = 328 Score = 290 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 95/323 (29%), Positives = 164/323 (50%), Gaps = 11/323 (3%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 Q+ ++T ++ + A + L G +AIPTETVYGLA D+ P A+++++ K RPA +PLI Sbjct: 13 QLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPLI 71 Query: 62 CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 H+ + + A + P + LA+ FWPGPLTL+L + P+ T L++ RVP Sbjct: 72 VHLGSAEQLSEWATDIAPEAYQLAEAFWPGPLTLLLP--KAKQVSPVVTGGLESVGIRVP 129 Query: 121 CGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 +++T+ +A PSAN ++S T+ + +L + + ++DGG + GLEST Sbjct: 130 AHPVLLDILKTHRLAVAAPSANPYKKLSPTSAQQVL-DGLNGRLAAVLDGGECQHGLEST 188 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVR-L 238 IV++ K R+LR G + L + E+ + PG + SHY P++++R + Sbjct: 189 IVDLTS-KPFRVLRAGPITASELSAVLGQEVMQ--PQVHQVAVPGNVDSHYQPKTRLRVI 245 Query: 239 RAIHVNPREAL-IRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297 A+ A I+ + + ++ + L + K L+ + D G I Sbjct: 246 DALENELATAGNIKIALLHLSELQASEQRLLKPMPQEAKAYGQALYRSLAEVDKWGVDEI 305 Query: 298 AFSSIPNHGLGIAINNRLERAAA 320 P +A+++RL RAA+ Sbjct: 306 WLERPPQGEAWLAVHDRLRRAAS 328 >gi|299747557|ref|XP_002911188.1| YwlC protein [Coprinopsis cinerea okayama7#130] gi|298407573|gb|EFI27694.1| YwlC protein [Coprinopsis cinerea okayama7#130] Length = 471 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 102/359 (28%), Positives = 163/359 (45%), Gaps = 48/359 (13%) Query: 8 DSNALRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 + + L++A L D + PTETVYGL + N A +++ K RP NPLI HVS Sbjct: 107 EPHLLKQAAHHLCDLHETVVFPTETVYGLGAVATNGDAASKIFSTKGRPPDNPLIVHVSS 166 Query: 67 ISMVKKH---ASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 ++M++ + P + L + FWPG LTL+ + T I + +A +T R+P Sbjct: 167 VTMLESLLPPGYLYPKAYQVLMRHFWPGALTLLFPRNAET-IPSIISAGQQTVAIRMPSH 225 Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 + LI G PLA PSAN SG+ S T +H+ + ++PLIIDGG +GLEST+V Sbjct: 226 PVARALIAVAGKPLAAPSANTSGKPSPTKAEHVAKD-LDGKVPLIIDGGSCGVGLESTVV 284 Query: 182 N-VQCEKKVRILRPGGLEIETLKRAISVELEYCVDET--------------STPQSPGML 226 + + + ++RILRPGG+ +E ++ A+ E + + P +PGM Sbjct: 285 DGLHEDGRIRILRPGGITVEQIENALKQEFPEGAAPSVLVHKRDYQDEEMETAPTTPGMK 344 Query: 227 KSHYAPRSQV--------------------RLRAIHVNPREALIRFGNVPIKNIENAII- 265 HY+P V L+ + N R ++ + I ++ I Sbjct: 345 YRHYSPSVPVTLLCTISKPPPGSTSISISTFLKCLAPNSRVGILAPSDAKIWDVVQTIEG 404 Query: 266 ----SLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 L + A LF+ + + I + G+A+ NR+ +AA Sbjct: 405 PHWHRFPLGPSKDPALTAQRLFDGLLTLEGEKVDLILIEEVAEEHEGLAVMNRVRKAAG 463 >gi|289550269|ref|YP_003471173.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus lugdunensis HKU09-01] gi|289179801|gb|ADC87046.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus lugdunensis HKU09-01] Length = 344 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 91/328 (27%), Positives = 150/328 (45%), Gaps = 17/328 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L + + G IA+PTETVYGL ++++ A+ ++YE K RP+ NPLI H+ D + Sbjct: 21 LDEIKHVYEQGGLIALPTETVYGLGANAKDQEAVTKIYEAKGRPSDNPLIVHIYDQQQLT 80 Query: 72 KHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIE 129 + L FWPGP++ +L L + T L + R+P + +++ Sbjct: 81 PFIETITDKVQILMNYFWPGPISFILPLKRGY-LCEKVTGGLDSIAVRMPSHPIGRAILK 139 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+A PSAN SG+ S T H+ + +I II+G S+ GLEST+++ Sbjct: 140 YVDLPIAAPSANTSGKPSPTTFDHVY-HDLNGKIDGIINGDQSEEGLESTVLDCTT-YPF 197 Query: 190 RILRPGGLEIETLKRAI-SVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH------ 242 +I RPG + + + ++ ++ P +PGM HYAP + V + + Sbjct: 198 KIARPGAITQSMINAILPDAVVDSNYNDMVRPIAPGMKYKHYAPDTPVTIVKMKGKHIPE 257 Query: 243 -VNPREALIRFGNVPIKNIENAIISLNLSKTG-KLKEAAFNLFNYMKIADDSG-ASSIAF 299 ++ A F V + I + + + L K +K A NL+ + D+ Sbjct: 258 IMDKEHAAFIFPEVYRQQIPSESLFIPLCKDDQDIKTANHNLYKILHDLDNMDHVHKAYI 317 Query: 300 SSIP-NHGLGIAINNRLERAAAPRNQSQ 326 N G AI NR+ +AAA R + Sbjct: 318 YGFDINDGT-QAIMNRMLKAAANRMIGE 344 >gi|289615809|emb|CBI57550.1| unnamed protein product [Sordaria macrospora] Length = 453 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 112/395 (28%), Positives = 171/395 (43%), Gaps = 88/395 (22%) Query: 12 LRKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 LR+A L +P+A PTETVYGL D+ A++ +Y K RP+ NPLI HV D+SM+ Sbjct: 57 LREAAHHLRTTDIPVAFPTETVYGLGADATRSAAVKGIYAAKGRPSDNPLIVHVCDLSML 116 Query: 71 KKHAS-------------------VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTAN 111 + S + + L FWPGPLT++L S + + P TA Sbjct: 117 RSLISSPSSSSSSSGQNQEEEKDPIPEIYHPLITRFWPGPLTILLPNPSPSLLAPEVTAG 176 Query: 112 LKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 L T R+P + LI+ PLA PSAN S + S T +H+L + I LI+DGG Sbjct: 177 LPTFGCRMPASALARSLIKLANAPLAAPSANASTKPSPTAAQHVL-DDLAGRIELILDGG 235 Query: 171 ISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVE-------LEYCVDETSTPQSP 223 +G+EST+V+ C V +LRPGG+ +E ++ E + V + P++P Sbjct: 236 SCSVGVESTVVDGLCSPPV-VLRPGGVSLEEIRSVPGWEGVEKAYKDQAEVGSKTAPRAP 294 Query: 224 GMLKSHYAPRSQVRLRAIH---------------------VNPREALIRFGNVPI----- 257 GM HY+P+++V L + A+IR G P+ Sbjct: 295 GMKYKHYSPKARVVLYEVEGGRGEVPGADVREAVEAVGKKEVKSVAVIRTGRWPVAGGLR 354 Query: 258 -KNIENAIIS------------------------------LNLSKTGKLKEAAFNLFNYM 286 + ++ A + L + +K A LF + Sbjct: 355 SQGLDGAAAAKDSGDMAEIGFVVREGQWLDEDDTTVLARLLEIDLGDDVKRVAHGLFAAL 414 Query: 287 KIADDSGASSIAFSSIPN-HGLGIAINNRLERAAA 320 + D GA I + + + A+ NRL +AA+ Sbjct: 415 RELDRRGADVIFVEGVSDGDDIAAAVMNRLRKAAS 449 >gi|242215074|ref|XP_002473355.1| predicted protein [Postia placenta Mad-698-R] gi|220727523|gb|EED81439.1| predicted protein [Postia placenta Mad-698-R] Length = 399 Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats. Identities = 100/371 (26%), Positives = 161/371 (43%), Gaps = 54/371 (14%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +I S+T A+++ + ++ +A PTETVYGL + + A R++ K RP NPLI Sbjct: 23 EITSVTTLEAIQRGAKQINECQTVAFPTETVYGLGALALDAVAASRIFSTKGRPPDNPLI 82 Query: 62 CHVSDISMVKKH----ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 HVS +M+ ++ L + FWPGPLTL+ T + + TAN T Sbjct: 83 VHVSSDAMLNTLLPEGYTISRTYEILIRHFWPGPLTLLFPTNPTL-VPSIITANQPTVAV 141 Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P + LI P+A PSAN SG+ S T +H+ + ++ +I+DGG +GL Sbjct: 142 RMPSHPVARALIALADAPIAAPSANSSGRPSPTRAEHVFKD-LDGKLGVILDGGPCGVGL 200 Query: 177 ESTIVN-VQCEKKVRILRPGGLEIETLKRAISVELEYCVDETS---------------TP 220 EST+++ + + +R+LRPGG+ +E L+ + EL D P Sbjct: 201 ESTVIDGLHADGNIRVLRPGGVTVEDLESVLQRELGDSGDVPKVLVHRRDFRDEAIEQAP 260 Query: 221 QSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAI---------------- 264 +PGM HY+P V L P + ++++ N + Sbjct: 261 TTPGMKYRHYSPAVPVILLRTSSPPSDVTPTPIKTFLESLHNRVQGSEGHLKIGLLAPSD 320 Query: 265 ---------------ISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGI 309 + L +A LF+ + D +G I I G+ Sbjct: 321 SPLPTNFTSSSDFEWQTFPLGPIADPSISAQRLFDGLLTLDAAGVDLILIEEIKEEREGL 380 Query: 310 AINNRLERAAA 320 A+ NR+ +AA Sbjct: 381 AVMNRVNKAAG 391 >gi|156744105|ref|YP_001434234.1| Sua5/YciO/YrdC/YwlC family protein [Roseiflexus castenholzii DSM 13941] gi|156235433|gb|ABU60216.1| Sua5/YciO/YrdC/YwlC family protein [Roseiflexus castenholzii DSM 13941] Length = 355 Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats. Identities = 99/340 (29%), Positives = 162/340 (47%), Gaps = 26/340 (7%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 S D + +A +++G +A PTETVYGL ++ + A+ R++ K RPA +P+I H+ Sbjct: 15 SAPDPRIIAEAAAVIESGGLVAFPTETVYGLGANALDERAVTRIFRAKGRPATDPIIAHI 74 Query: 65 SDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 +D+ + A + P++ LA+ FWPGPLTLV+ + +A T R+P Sbjct: 75 ADLRQLDMLARDIPPVARVLAQRFWPGPLTLVVWRRPI--VPANLSAGRATVAVRMPAHP 132 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 LI G P+A PSANR + S T H+L + I L++DGG + +G+ES++V+ Sbjct: 133 VALALIAAAGVPIAAPSANRFSRPSPTTAVHVL-DDLAGCIDLVLDGGPTLVGIESSVVD 191 Query: 183 VQCEKKVRILRPGGLEIETLKRAIS---VELEYCVDETSTPQSPGMLKSHYAPRSQVR-- 237 + + R+LRPGG+ + L+ + VE Y +PGML HYAP + + Sbjct: 192 LTTD-PPRLLRPGGVTVAALRELLPELIVEPRYLSVGDEAAPAPGMLLRHYAPDAPLIVV 250 Query: 238 ---------------LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNL 282 L A+ + ++ F + + + + L + A L Sbjct: 251 AGEREAALARIRSEVLMALDAGKQVGMLAFDEDVAELADLPVRIVALGSAANPGQVAQRL 310 Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 F ++ + G I GL +A+ +RL RAA R Sbjct: 311 FAALREIERIGVDLILVRDPGREGLRLAVRDRLVRAAEGR 350 >gi|258621755|ref|ZP_05716786.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|258585986|gb|EEW10704.1| conserved hypothetical protein [Vibrio mimicus VM573] Length = 329 Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats. Identities = 95/325 (29%), Positives = 160/325 (49%), Gaps = 14/325 (4%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 Q+ ++T ++ + A + L G +AIPTETVYGLA D+ P A+++++ K RPA +PLI Sbjct: 13 QLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADASQPEAVKQIFSAKGRPANHPLI 71 Query: 62 CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 H + + A V P + LA+ FWPGPLT++L + P+ T L+T RVP Sbjct: 72 VHFGSAEQIAEWATDVVPEAYQLAEAFWPGPLTMLLP--KAEHVSPVVTGGLETVGLRVP 129 Query: 121 CGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 ++++ + +A PSAN ++S T+ + +L + ++ ++DGG + GLEST Sbjct: 130 AHPVLLEILKAHHLAVAAPSANPYKKLSPTSAQQVL-DGLNGKLAAVLDGGECQHGLEST 188 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVE-LEYCVDETSTPQSPGMLKSHYAPRSQVR- 237 IV++ K R+LR G + L + E L+ V + + PG + SHY P++++R Sbjct: 189 IVDLTS-KPFRVLRAGPITASELSAVLGQEVLQPHVHQVAV---PGNVDSHYQPKTRLRV 244 Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNL--SKTGKLKEAAFNLFNYMKIADDSGAS 295 + + + E +L K L+ + D G Sbjct: 245 IDHVENELATQASDVKIALLHLSEQQASEQSLLKPMPQDAKAYGQALYRSLAEVDKWGVD 304 Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320 I P +A+++RL RAA+ Sbjct: 305 EIWLERPPQGEAWLAVHDRLRRAAS 329 >gi|261210756|ref|ZP_05925048.1| YrdC family protein [Vibrio sp. RC341] gi|260840241|gb|EEX66821.1| YrdC family protein [Vibrio sp. RC341] Length = 320 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 95/323 (29%), Positives = 162/323 (50%), Gaps = 11/323 (3%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 Q+ ++T ++ + A + L G +AIPTETVYGLA D+ P A+++++ K RPA +PLI Sbjct: 5 QLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPLI 63 Query: 62 CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 H+ + + A + + LA+ FWPGPLT++L + P+ T L T RVP Sbjct: 64 VHLGSAEQLSEWATDIADEAYQLAQAFWPGPLTMLLP--KAEHVSPVVTGGLDTIGIRVP 121 Query: 121 CGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 ++++ + +A PSAN ++S T+ + +L + + ++DGG + GLEST Sbjct: 122 AHPVLLEILKAHRLAVAAPSANPYKKLSPTSAQQVL-DGLNGRLAAVLDGGECQHGLEST 180 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVR-L 238 IV++ C K R+LR G + L + E+ + PG + SHY P++++R + Sbjct: 181 IVDLTC-KPFRVLRAGPITASELSAVLGQEV--LQPQVHHVAVPGNVDSHYQPKTRLRVI 237 Query: 239 RAIHVNPREAL-IRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297 AI A I+ + + ++ + L K L+ + D G I Sbjct: 238 DAIDNELVTAGNIKIALLHLSELQASEQRLLKPMPQDAKAYGQALYRSLAEVDKWGVDEI 297 Query: 298 AFSSIPNHGLGIAINNRLERAAA 320 P +A+++RL RAA+ Sbjct: 298 WLERPPQGETWLAVHDRLRRAAS 320 >gi|153828152|ref|ZP_01980819.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|148876394|gb|EDL74529.1| conserved hypothetical protein [Vibrio cholerae 623-39] Length = 329 Score = 289 bits (741), Expect = 4e-76, Method: Composition-based stats. Identities = 94/324 (29%), Positives = 164/324 (50%), Gaps = 12/324 (3%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 Q+ ++T ++ + A + L G +AIPTETVYGLA D+ P A+++++ K RPA +PLI Sbjct: 13 QLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPLI 71 Query: 62 CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 H+ + + A + P + LA+ FWPGPLTL+L + P+ T L++ RVP Sbjct: 72 VHLGSAEQLSEWATDIAPEAYQLAEAFWPGPLTLLLP--KAKQVSPVVTGGLESVGIRVP 129 Query: 121 CGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 +++T+ +A PSAN ++S T+ + +L + + ++DGG + GLEST Sbjct: 130 AHPVLLDILKTHRLAVAAPSANPYKKLSPTSAQQVL-DGLNGRLAAVLDGGECQHGLEST 188 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 IV++ K R+LR G + L + E+ + PG + SHY P++++R+ Sbjct: 189 IVDLTS-KPFRVLRAGPITASELSAVLGQEV--LQPQVHQVAVPGNVDSHYQPKTRLRVI 245 Query: 240 ---AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296 A + + +R + + ++ + L + K L+ + D G Sbjct: 246 DDLARELATQSDELRIALLHLSALQASEQRLLKPMPQEAKAYGQALYRSLAEVDKWGVDE 305 Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320 I P +A+++RL RAA+ Sbjct: 306 IWLERPPEGEAWLAVHDRLRRAAS 329 >gi|225019404|ref|ZP_03708596.1| hypothetical protein CLOSTMETH_03357 [Clostridium methylpentosum DSM 5476] gi|224947821|gb|EEG29030.1| hypothetical protein CLOSTMETH_03357 [Clostridium methylpentosum DSM 5476] Length = 341 Score = 289 bits (741), Expect = 4e-76, Method: Composition-based stats. Identities = 115/325 (35%), Positives = 176/325 (54%), Gaps = 16/325 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D A++KA L G + +PTETVYGLA ++ NP A+ ++++ K RP NPLI H+SD+ Sbjct: 15 DEQAIQKAAALLREGDLVGMPTETVYGLAANALNPAALLKIFKAKGRPQDNPLIVHISDL 74 Query: 68 SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 SM+ S + ++ LA+ +WPGPLT++L I +TA L++ R P + Sbjct: 75 SMLDGLVSRLPTIAKSLAQAYWPGPLTMILP--KGKQIPYEATAGLESVGIRFPSHPVAQ 132 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 KLI G PLA PSAN SG+ S T H+ + +IPLI+DGG +GLEST++ V Sbjct: 133 KLIAAAGLPLAAPSANLSGKPSPTTAAHVY-EDLNGKIPLILDGGECSVGLESTVIAV-G 190 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCV----DETSTPQSPGMLKSHYAPRSQVRLRAI 241 E+ VR+LRPGG+ +E L+R VE++ V + + SPGM HY+P++ V + Sbjct: 191 EESVRLLRPGGITVEMLERFCPVEVDDAVCHQLKQGAVAASPGMKYKHYSPKAHVVILDG 250 Query: 242 HVNPREALIRFGN------VPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 + + + + + +L+ G +E A LF ++ D+ GA Sbjct: 251 TLEQFCTYLSAHKQKNTYALVFDGEQQELGVPSLTYGGNAQEQAKELFAALRKLDELGAG 310 Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320 + G+G+A+ NRL RAA Sbjct: 311 VVYARCPDRSGMGLAVYNRLIRAAG 335 >gi|153802309|ref|ZP_01956895.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|124122134|gb|EAY40877.1| conserved hypothetical protein [Vibrio cholerae MZO-3] Length = 328 Score = 289 bits (741), Expect = 4e-76, Method: Composition-based stats. Identities = 95/323 (29%), Positives = 165/323 (51%), Gaps = 11/323 (3%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 Q+ ++T ++ + A + L G +AIPTETVYGLA D+ P A+++++ K RPA +PLI Sbjct: 13 QLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPLI 71 Query: 62 CHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 H+ + + A+ + P + LA+ FWPGPLTL+L + P+ T L++ RVP Sbjct: 72 VHLGSAEQLSEWATAIAPEAYQLAEAFWPGPLTLLLP--KAKQVSPVVTGGLESVGIRVP 129 Query: 121 CGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 +++T+ +A PSAN ++S T+ + +L + + ++DGG + GLEST Sbjct: 130 AHPVLLDILKTHRLAVAAPSANPYKKLSPTSAQQVL-DGLNGRLAAVLDGGECQHGLEST 188 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVR-L 238 IV++ K R+LR G + L + E+ + PG + SHY P++++R + Sbjct: 189 IVDLTS-KPFRVLRAGPITASELSAVLGQEV--LQPQVHQVAVPGNVDSHYQPKTRLRVI 245 Query: 239 RAIHVNPREAL-IRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297 A+ A I+ + + ++ + L + K L+ + D G I Sbjct: 246 DALENELATAGNIKIALLHLSELQASEQRLLKPMPQEAKAYGQALYRSLAEVDKWGVDEI 305 Query: 298 AFSSIPNHGLGIAINNRLERAAA 320 P +A+++RL RAA+ Sbjct: 306 WLERPPQGEAWLAVHDRLRRAAS 328 >gi|6321269|ref|NP_011346.1| Sua5p [Saccharomyces cerevisiae S288c] gi|417826|sp|P32579|SUA5_YEAST RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein SUA5; AltName: Full=Suppressor of upstream AUG protein 5; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein SUA5 gi|4566|emb|CAA45598.1| SUA5 [Saccharomyces cerevisiae] gi|971384|emb|CAA59760.1| G1660 [Saccharomyces cerevisiae] gi|1322770|emb|CAA96881.1| SUA5 [Saccharomyces cerevisiae] gi|285812044|tpg|DAA07944.1| TPA: Sua5p [Saccharomyces cerevisiae S288c] Length = 426 Score = 289 bits (741), Expect = 4e-76, Method: Composition-based stats. Identities = 109/384 (28%), Positives = 166/384 (43%), Gaps = 71/384 (18%) Query: 5 SITDSN---ALRKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 +ITD AL +A + +A PTETVYGL + N ++ +Y K RP+ NPL Sbjct: 42 TITDPETEAALVEAARIIRDTDETVAFPTETVYGLGGSALNDNSVLSIYRAKNRPSDNPL 101 Query: 61 ICHVSDISMVKK-------------HASVDPLSLHLAKLFWPGPLTLVLDLLST--TDIH 105 I HVS I + + ++ + L WPGPLT++L + S+ + + Sbjct: 102 ITHVSSIDQLNRKVFNQPHLSGTSLFDNIPSIYRPLISSLWPGPLTILLPVPSSEHSALS 161 Query: 106 PLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP 164 L+TA+ T R+P + LI P+A PSAN S + S T H+ + +IP Sbjct: 162 KLTTADQPTFAVRIPANPVARALIALSDTPIAAPSANASTRPSPTLASHVY-HDLKDKIP 220 Query: 165 LIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKR-------AISVELEYCVDET 217 +I+DGG K+G+EST+V+ C +LRPGG E + + VE + V++ Sbjct: 221 IILDGGACKVGVESTVVDGLCN-PPTLLRPGGFTYEEIVKLGGEAWSLCKVENKKTVEKG 279 Query: 218 STPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVP---------------IKNIE- 261 ++PGM HY+P ++V L H L + IK I Sbjct: 280 EKVRTPGMKYRHYSPSAKVVLLVPHCEGDGILKGVDRMERLKRLIETELKANSNIKKIAI 339 Query: 262 -----------------------NAIISLNLSKTGKLKEAAFNLFNYMKIADDSG-ASSI 297 I L ++G +E NLF ++ D++ I Sbjct: 340 LTSLKLRDSDLQSKIFNEPDFSSKTFIIERLGQSG--EEIQTNLFAALRKVDENDKVDLI 397 Query: 298 AFSSIPNHGLGIAINNRLERAAAP 321 I G G+A+ NRL +AAA Sbjct: 398 FVEGINEEGEGLAVMNRLRKAAAN 421 >gi|290559728|gb|EFD93053.1| Sua5/YciO/YrdC/YwlC family protein [Candidatus Parvarchaeum acidophilus ARMAN-5] Length = 358 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 97/339 (28%), Positives = 152/339 (44%), Gaps = 24/339 (7%) Query: 2 QIMSIT----DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 +IM ++ D ++ A + G + PTETVYG+ D+ N A R ++ +K R A Sbjct: 11 EIMKMSKKNVDLEKIKLAAREIRGGKLVVFPTETVYGIGADAFNTKACRDIFRVKNRAAD 70 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 NPLI H+SD + VD + WP P+T +L I + TA + T Sbjct: 71 NPLIVHISDFEQLDAITYVDGELREKIRRLWPNPITFILKRKK---IPDVVTAGMDTVAV 127 Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P LI P+A PSAN S S T KH + ++ +IIDGG SK G+ Sbjct: 128 RMPNNRIALSLIRESHTPIAAPSANISTFPSATEAKHAI-EDFNGKVSVIIDGGRSKFGI 186 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCVDET---STPQSPGMLKSHYAP 232 EST+++V K R+LRPG EI ++ + + + V++T + SPGM HY+P Sbjct: 187 ESTVIDV-SRKPYRLLRPGAFEIGDAEKVLGDIIIPKEVNKTVNKAKVLSPGMKYRHYSP 245 Query: 233 RSQVRLRAIHVNPR-------EALIRFGNVPIKNIENAIIS---LNLSKTGKLKEAAFNL 282 R + L + + ++F + ++ + + L + NL Sbjct: 246 RKPLFLFENFRDMKAASDYLLHKNLKFAVISPEDYAHFFYKTRIITLGSIENPISISKNL 305 Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 F + D S + +A+ NRLE+AA Sbjct: 306 FRSFRRLDIEEVDFGLISKMRLKKFDLAVRNRLEKAAGK 344 >gi|225164315|ref|ZP_03726583.1| SUA5/YciO/YrdC/YwlC family protein [Opitutaceae bacterium TAV2] gi|224801077|gb|EEG19405.1| SUA5/YciO/YrdC/YwlC family protein [Opitutaceae bacterium TAV2] Length = 373 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 122/346 (35%), Positives = 177/346 (51%), Gaps = 31/346 (8%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +I T +N LR+ L G +A+P+ETVYGLA D+ N A ++ K+RP +PLI Sbjct: 34 RIYRPTPAN-LRRLASALARGDLVAVPSETVYGLAADALNVAACEAIFAAKRRPHHDPLI 92 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 H++ + + + A P +L LAK FWPGPLTLVL + L TA L + R+P Sbjct: 93 VHIASLRQLHEIAMPSPEALLLAKAFWPGPLTLVLPKRPH--VPDLVTAGLPSVAVRMPA 150 Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 +K+I LA PSAN G +S T +H+ ++ I I+DGG K+G+ESTI Sbjct: 151 HPLFQKIIRLSQRALAAPSANPFGYVSPTTAQHV-KDNLQNRIKHILDGGPCKVGVESTI 209 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYC--------------VDETSTPQSPGML 226 ++++ +LR GGL +E ++R + + T +PGML Sbjct: 210 IDLREPLHPVLLRAGGLPVEEIQRVLQRPVSLAHHVPPSPPPPLSLRSHATQGQTAPGML 269 Query: 227 KSHYAPRSQVRL-------RAIHVNPREALIRFGNVPIKNIENAIIS--LNLSKTGKLKE 277 HY+PR+ V L ++ P EAL+ P KN+ + +I LSKTG L E Sbjct: 270 DHHYSPRTPVALLTNLTPDFIKNLPPDEALLCL--QPPKNLRHRMIHNLFYLSKTGDLNE 327 Query: 278 AAFNLFNYMKIADDSGASSIAFSSIPN-HGLGIAINNRLERAAAPR 322 AA LF+ +++ D+ G I GL AI +RL RAAA R Sbjct: 328 AARQLFDRLRMLDNGGWKKIHAELPGQKKGLAPAIRDRLTRAAAKR 373 >gi|149234890|ref|XP_001523324.1| protein SUA5 [Lodderomyces elongisporus NRRL YB-4239] gi|146453113|gb|EDK47369.1| protein SUA5 [Lodderomyces elongisporus NRRL YB-4239] Length = 454 Score = 289 bits (740), Expect = 5e-76, Method: Composition-based stats. Identities = 107/412 (25%), Positives = 172/412 (41%), Gaps = 98/412 (23%) Query: 2 QIMSITDSN---ALRKAC-EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 Q+ ITD ++ A E L I PTETVYGLA + + +++ +Y K+RPA Sbjct: 41 QVPRITDDETEANIKLAAKELLTTNNAIGFPTETVYGLAGSALSDESVKSIYRAKQRPAD 100 Query: 58 NPLICHVSDISMVKK-----HASVDPLSLHLAKLFWPGPLTLVLDLLS------------ 100 NPLI HVS +S +++ + + + +L + FWPGPLT++L S Sbjct: 101 NPLIIHVSSLSQLQRKLLPANYEIPKIYHNLIEHFWPGPLTILLPNNSSNSNSNSSSNSN 160 Query: 101 -----------------TTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142 + I TAN T R+P + LI PLA PSAN Sbjct: 161 SNSNSNSSSNSSSSSNNKSPISSYVTANQDTFAVRMPAHPVARALIAISDLPLAAPSANS 220 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202 S + S T +H++ + +IP+++DGG +G+EST+V+ + + +LRPGG+ +E L Sbjct: 221 STKPSPTLAQHVM-HDLGGKIPIVLDGGACDVGVESTVVDGLSDPPM-LLRPGGVSLEEL 278 Query: 203 KRAISVE------LEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNV- 255 KR E + ++PGM HY+P ++V L + +A+ ++ Sbjct: 279 KRVGGEEWKNVRVAKRTAGADELVKTPGMKYKHYSPDAKVVLFVNCGDGEDAIAKYLKAN 338 Query: 256 -----------------------------------------------PIKNIENAIISLN 268 ++ + + + Sbjct: 339 RVSVDGVEVGARGDLRDSKDSKQEGQGQKHLISANADTPKVALLKSRHFRDYKGIDVVRD 398 Query: 269 LSKTGKLKEAAFNLFNYMKIAD-DSGASSIAFSSIPNHGLGIAINNRLERAA 319 L G + A NLF Y++ D D I + G+AI NRL++AA Sbjct: 399 LGSAGD--DIARNLFKYLREVDEDEKVDLILIEGVEEVDEGLAIMNRLKKAA 448 >gi|151943645|gb|EDN61955.1| suppressor of upstream aug [Saccharomyces cerevisiae YJM789] gi|190407112|gb|EDV10379.1| protein SUA5 [Saccharomyces cerevisiae RM11-1a] gi|256272245|gb|EEU07236.1| Sua5p [Saccharomyces cerevisiae JAY291] Length = 426 Score = 289 bits (740), Expect = 5e-76, Method: Composition-based stats. Identities = 108/382 (28%), Positives = 168/382 (43%), Gaps = 67/382 (17%) Query: 5 SITDSN---ALRKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 +ITD AL +A + +A PTETVYGL + N ++ +Y+ K RP+ NPL Sbjct: 42 TITDPETETALVEAARIIRDTDETVAFPTETVYGLGGSALNDNSVLSIYKAKNRPSDNPL 101 Query: 61 ICHVSDISMVKK-------------HASVDPLSLHLAKLFWPGPLTLVLDLLST--TDIH 105 I HVS I + + ++ + L WPGPLT++L + S+ + + Sbjct: 102 ITHVSSIDQLNRKVFNQPHLSGTSLFDNIPSIYRPLISSLWPGPLTILLPVPSSEHSALS 161 Query: 106 PLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP 164 L+TA+ T R+P + LI P+A PSAN S + S T H+ + +IP Sbjct: 162 KLTTADQPTFAVRIPANPVARALIALSDTPIAAPSANASTRPSPTLASHVY-HDLKDKIP 220 Query: 165 LIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKR-------AISVELEYCVDET 217 +I+DGG K+G+EST+V+ C + +LRPGG E + + VE + V++ Sbjct: 221 IILDGGACKVGVESTVVDGLCNPPM-LLRPGGFTYEEIVKLGGEAWSLCKVENKKTVEKG 279 Query: 218 STPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNV------------PIKNIENAII 265 ++PGM HY+P ++V L H L + +NI+ I Sbjct: 280 EKVRTPGMKYRHYSPSAKVVLLVPHCEGDGILKGVDRMERLKRLIETELKANRNIKKIAI 339 Query: 266 SLNLSKTG-KL------------------------KEAAFNLFNYMKIADDSG-ASSIAF 299 +L L +E NLF ++ D++ I Sbjct: 340 LTSLKLRDSDLQSKIFNEPDFSSKTFIIERLGQSGEEIQTNLFAALRKVDENDKVDLIFV 399 Query: 300 SSIPNHGLGIAINNRLERAAAP 321 I G G+A+ NRL +AAA Sbjct: 400 EGINEEGEGLAVMNRLRKAAAN 421 >gi|20093338|ref|NP_619413.1| SUA5/yciO/yrdC family protein [Methanosarcina acetivorans C2A] gi|19918700|gb|AAM07893.1| SUA5/yciO/yrdC family protein [Methanosarcina acetivorans C2A] Length = 360 Score = 288 bits (739), Expect = 6e-76, Method: Composition-based stats. Identities = 107/353 (30%), Positives = 164/353 (46%), Gaps = 35/353 (9%) Query: 2 QIMSITDSN---ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58 ++ +++ N L +A E + G +A PTETVYGL + +P A+R+++E K+RP N Sbjct: 12 RLFRVSEENFDAVLDEAAEIIRRGGTVAFPTETVYGLGANGLDPEAVRKIFEAKERPPGN 71 Query: 59 PLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 PL V V K A + + L FWPGPLT+VL+ + +++ NL + Sbjct: 72 PLSLLVHSGEDVGKVAKNIPEKAFRLMDSFWPGPLTIVLE--KKDIVPEITSGNLPSIGL 129 Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P +L++ G PLA PSAN SG+ S + H+L + + I +IDGG + IGL Sbjct: 130 RMPDHRIPLELVKRAGTPLAAPSANLSGKPSPSLAAHVL-ADLTGRIDAVIDGGGTAIGL 188 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSP----GMLKSHYAP 232 EST+V++ E V +LRPG + I L++ I ++ E + P G +HY P Sbjct: 189 ESTVVDMTVEPPV-VLRPGAVGIAELEKVIG-KVRPTYGEPDSRAVPEKQAGQKYNHYTP 246 Query: 233 RSQVRLRAIHVNPREALI------------RFGNVPIKNIE--------NAIISLNLSKT 272 +QV L I + G + +A L Sbjct: 247 DTQVVLVEGDRKKVSEKIGSLLENSLREGKKVGFLLSNETAGFFASEGLSAQECFLLGSR 306 Query: 273 GKLKEAAFNLFNYMKIADDSGASSIAFSS-IPNHGLGIAINNRLERAAAPRNQ 324 + +EAA LF +++ D I GLG A+ NRL AA+ R Sbjct: 307 DEPEEAARRLFEGLRVLDAKSLDVILVDGSFSPSGLGAALLNRLREAASLRYA 359 >gi|259146341|emb|CAY79598.1| Sua5p [Saccharomyces cerevisiae EC1118] gi|323348688|gb|EGA82930.1| Sua5p [Saccharomyces cerevisiae Lalvin QA23] gi|323355058|gb|EGA86888.1| Sua5p [Saccharomyces cerevisiae VL3] Length = 417 Score = 288 bits (739), Expect = 6e-76, Method: Composition-based stats. Identities = 108/382 (28%), Positives = 168/382 (43%), Gaps = 67/382 (17%) Query: 5 SITDSN---ALRKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 +ITD AL +A + +A PTETVYGL + N ++ +Y+ K RP+ NPL Sbjct: 33 TITDPETETALVEAARIIRDTDETVAFPTETVYGLGGSALNDNSVLSIYKAKNRPSDNPL 92 Query: 61 ICHVSDISMVKK-------------HASVDPLSLHLAKLFWPGPLTLVLDLLST--TDIH 105 I HVS I + + ++ + L WPGPLT++L + S+ + + Sbjct: 93 ITHVSSIDQLNRKVFNQPHLSGTSLFDNIPSIYRPLISSLWPGPLTILLPVPSSEHSALS 152 Query: 106 PLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP 164 L+TA+ T R+P + LI P+A PSAN S + S T H+ + +IP Sbjct: 153 KLTTADQPTFAVRIPANPVARALIALSDTPIAAPSANASTRPSPTLASHVY-HDLKDKIP 211 Query: 165 LIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKR-------AISVELEYCVDET 217 +I+DGG K+G+EST+V+ C + +LRPGG E + + VE + V++ Sbjct: 212 IILDGGACKVGVESTVVDGLCNPPM-LLRPGGFTYEEIVKLGGEAWSLCKVENKKTVEKG 270 Query: 218 STPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNV------------PIKNIENAII 265 ++PGM HY+P ++V L H L + +NI+ I Sbjct: 271 EKVRTPGMKYRHYSPSAKVVLLVPHCEGDGILKGVDRMERLKRLIETELKANRNIKKIAI 330 Query: 266 SLNLSKTG-KL------------------------KEAAFNLFNYMKIADDSG-ASSIAF 299 +L L +E NLF ++ D++ I Sbjct: 331 LTSLKLRDSDLQSKIFNEPDFSSKTFIIERLGQSGEEIQTNLFAALRKVDENDKVDLIFV 390 Query: 300 SSIPNHGLGIAINNRLERAAAP 321 I G G+A+ NRL +AAA Sbjct: 391 EGINEEGEGLAVMNRLRKAAAN 412 >gi|328851428|gb|EGG00583.1| hypothetical protein MELLADRAFT_111724 [Melampsora larici-populina 98AG31] Length = 484 Score = 288 bits (739), Expect = 7e-76, Method: Composition-based stats. Identities = 108/387 (27%), Positives = 170/387 (43%), Gaps = 71/387 (18%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 ++ +++AL+ A + +A PTETVYGL + + A+ ++Y K RPA NPLI H Sbjct: 84 ITFANASALQTASILIQNNELVAFPTETVYGLGACATSNIAVSKIYRTKGRPADNPLIVH 143 Query: 64 VSDISMVKKHA---SVDPLSLH-LAKLFWPGPLTLVLDLLST----TDIHPLSTANLKTA 115 VS + M++ V PLS L FWPGPLT ++ +S+ + I T LKT Sbjct: 144 VSSLHMLQSLLPSDWVLPLSYQILIDEFWPGPLTFLVPTISSEQPISKIPDKVTCGLKTV 203 Query: 116 CFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174 R+P + LI G P+A PSAN SG+ S T +H+ + I L++DGG + Sbjct: 204 AVRIPSHPIARALISLSGVPIAAPSANLSGRPSPTEAEHV-RKDLEPSIKLVLDGGPCNV 262 Query: 175 GLESTIVN-VQCEKKVRILRPGGLEIETLKRAI----------SVELEYCVDETST---- 219 G+EST+++ + + +R+LR GGL E + + + V + + T Sbjct: 263 GVESTVIDGLNPDGGIRVLRLGGLSAEDITQCLVNAKTSGKLAEVPIIEVPNSNGTSLAP 322 Query: 220 ---PQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIEN-------------- 262 P +PGM HY+P ++V L + P + PI I+N Sbjct: 323 GIQPTTPGMKYKHYSPNAKVTLINLIRPPIPQNWQSFPTPIDLIDNFTTNFRRENIVCRP 382 Query: 263 -----------------------------AIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293 +I L + + +A LF+ M+ D+ Sbjct: 383 VSIGLMLIENGELLKAFKSYEEELDCDEVELIHYALGPINQPEISAQRLFSSMRSLDECL 442 Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAA 320 I +P +GLG + RL +AA Sbjct: 443 VDIIFVEQVPLNGLGSTVMERLYKAAG 469 >gi|269957074|ref|YP_003326863.1| Sua5/YciO/YrdC/YwlC family protein [Xylanimonas cellulosilytica DSM 15894] gi|269305755|gb|ACZ31305.1| Sua5/YciO/YrdC/YwlC family protein [Xylanimonas cellulosilytica DSM 15894] Length = 346 Score = 288 bits (738), Expect = 7e-76, Method: Composition-based stats. Identities = 109/340 (32%), Positives = 162/340 (47%), Gaps = 22/340 (6%) Query: 1 MQIMSITD-SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 M ++ D + + A L AG +A+PTETVYGLA D+ +P + +Y K RP+ NP Sbjct: 1 MTVLLHADQPDDVAAAAGILRAGGIVALPTETVYGLAGDALDPAVVGAIYAAKGRPSDNP 60 Query: 60 LICHVSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 LI HV+ + P + LA+ FWPGPLT+VL + TA L T R Sbjct: 61 LIVHVAAFDDLPAVVRDVPGSARALAEAFWPGPLTMVLPRRDV--VPDRVTAGLDTVAVR 118 Query: 119 VPCGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 VP + ++ G PLA PSAN++G S T +H+L + IP ++DGG +G+E Sbjct: 119 VPAHEAFRAVLRLAGVPLAAPSANQAGSPSPTTAEHVL-HDLDGRIPAVLDGGPCTVGVE 177 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCVDETSTPQ----SPGMLKSHYAP 232 ST+V++ R+LRPGG+ +E L+ + V+++ V P SPGM HYAP Sbjct: 178 STVVDLTS-TPPRLLRPGGVSLEELRAVLGDVDVDPAVAGELAPDQVPGSPGMKYRHYAP 236 Query: 233 RSQVRLRAIHVNPREALIR----FGNVPIKNIENAIISLNL-----SKTGKLKEAAFNLF 283 + V + A +R V + + E A L A LF Sbjct: 237 AAPVVVVDGPTTEAAAWVRGQPELHPVVLCSEEEAAAFAGLDVVTYGSAADPASLARGLF 296 Query: 284 NYMKIADDSGASSIAFSSIPNH-GLGIAINNRLERAAAPR 322 ++ D + + + G+ A+ NRL +AAA R Sbjct: 297 GALRSVDRPEITRVFARCPADDAGIARAVRNRLLKAAAFR 336 >gi|207345471|gb|EDZ72286.1| YGL169Wp-like protein [Saccharomyces cerevisiae AWRI1631] Length = 426 Score = 288 bits (738), Expect = 7e-76, Method: Composition-based stats. Identities = 108/382 (28%), Positives = 168/382 (43%), Gaps = 67/382 (17%) Query: 5 SITDSN---ALRKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 +ITD AL +A + +A PTETVYGL + N ++ +Y+ K RP+ NPL Sbjct: 42 TITDPETEAALVEAARIIRDTDETVAFPTETVYGLGGSALNDNSVLSIYKAKNRPSDNPL 101 Query: 61 ICHVSDISMVKK-------------HASVDPLSLHLAKLFWPGPLTLVLDLLST--TDIH 105 I HVS I + + ++ + L WPGPLT++L + S+ + + Sbjct: 102 ITHVSSIDQLNRKVFNQPHLSGTSLFDNIPSIYRPLISSLWPGPLTILLPVPSSEHSALS 161 Query: 106 PLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP 164 L+TA+ T R+P + LI P+A PSAN S + S T H+ + +IP Sbjct: 162 KLTTADQPTFAVRIPANPVARALIALSDTPIAAPSANASTRPSPTLASHVY-HDLKDKIP 220 Query: 165 LIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKR-------AISVELEYCVDET 217 +I+DGG K+G+EST+V+ C + +LRPGG E + + VE + V++ Sbjct: 221 IILDGGACKVGVESTVVDGLCNPPM-LLRPGGFTYEEIVKLGGEAWSLCKVENKKTVEKG 279 Query: 218 STPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNV------------PIKNIENAII 265 ++PGM HY+P ++V L H L + +NI+ I Sbjct: 280 EKVRTPGMKYRHYSPSAKVVLLVPHCEGDGILKGVDRMERLKRLIETELKANRNIKKIAI 339 Query: 266 SLNLSKTG-KL------------------------KEAAFNLFNYMKIADDSG-ASSIAF 299 +L L +E NLF ++ D++ I Sbjct: 340 LTSLKLRDSDLQSKIFNEPDFSSKTFIIERLGQSGEEIQTNLFAALRKVDENDKVDLIFV 399 Query: 300 SSIPNHGLGIAINNRLERAAAP 321 I G G+A+ NRL +AAA Sbjct: 400 EGINEEGEGLAVMNRLRKAAAN 421 >gi|295397093|ref|ZP_06807205.1| Sua5/YciO/YrdC/YwlC family protein [Aerococcus viridans ATCC 11563] gi|294974685|gb|EFG50400.1| Sua5/YciO/YrdC/YwlC family protein [Aerococcus viridans ATCC 11563] Length = 341 Score = 288 bits (738), Expect = 7e-76, Method: Composition-based stats. Identities = 94/339 (27%), Positives = 153/339 (45%), Gaps = 27/339 (7%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 I ++ + + L G +A PTETV+GL + N A++ +Y +K RP+ NPLI H+ Sbjct: 3 KIIQASEIDEGAALLQDGQLVAFPTETVFGLGAIANNADAVKSVYTVKGRPSDNPLIVHI 62 Query: 65 SDISMVKKH-ASVDPLSLHLAKL----FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 +D + + DP L + FWPGPLTLV+ + T + T + T R+ Sbjct: 63 ADPEDIFDYMIDNDPERHDLIEKLTTQFWPGPLTLVVPVKPDT-FPSVVTGGMDTVGIRL 121 Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T+ LI G P+ PSAN SG+ S T V H++ I +++ ++IG+ES Sbjct: 122 PDHETTRDLIRATGFPIVGPSANISGKPSPTQVAHVM-HDFDGVIGGVVNAEPTRIGVES 180 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEY-----CVDETSTPQSPGMLKSHYAPR 233 T++++ + + ILRPG + L ++ Y + P++PGM HY+P Sbjct: 181 TVLDLTDSRGLIILRPGYITKTMLAEVVTGMPIYIGGTIANNADEAPKAPGMKYVHYSPN 240 Query: 234 SQVRLRAIHVNP-----------REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNL 282 V + + AL N K + ++L T ++ A L Sbjct: 241 QPVMAVSSDKMSNVLANLSSQSIKVALATSENNFEKYKTSVASIVSLGPT--IETATQQL 298 Query: 283 FNYMKIADDS-GASSIAFSSIPNHGLGIAINNRLERAAA 320 F ++ DD I P+ A NRL +A++ Sbjct: 299 FAALRTFDDQENIQQIVVELYPDTEKNGAYRNRLIKASS 337 >gi|229505324|ref|ZP_04394834.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae BX 330286] gi|229357547|gb|EEO22464.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae BX 330286] Length = 336 Score = 288 bits (738), Expect = 8e-76, Method: Composition-based stats. Identities = 94/324 (29%), Positives = 164/324 (50%), Gaps = 12/324 (3%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 Q+ ++T ++ + A + L G +AIPTETVYGLA D+ P A+++++ K RPA +PLI Sbjct: 20 QLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPLI 78 Query: 62 CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 H+ + + A + P + LA+ FWPGPLTL+L + P+ T L++ RVP Sbjct: 79 VHLGSAEQLSEWATDIAPEAYQLAEAFWPGPLTLLLP--KAKQVSPVVTGGLESVGIRVP 136 Query: 121 CGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 +++T+ +A PSAN ++S T+ + +L + + ++DGG + GLEST Sbjct: 137 AHPVLLDILKTHRLAVAAPSANPYKKLSPTSAQQVL-DGLNGRLAAVLDGGECQHGLEST 195 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 IV++ K R+LR G + L + E+ + PG + SHY P++++R+ Sbjct: 196 IVDLTS-KPFRVLRAGPITASELSAVLGQEV--LQPQVHQVAVPGNVDSHYQPKTRLRVI 252 Query: 240 ---AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296 A + + +R + + ++ + L + K L+ + D G Sbjct: 253 DDLARELATQSDELRIALLNLSALQASEQRLLKPMPQEAKAYGQALYRSLAEVDKWGVDE 312 Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320 I P +A+++RL RAA+ Sbjct: 313 IWLERPPQGEAWLAVHDRLRRAAS 336 >gi|16081439|ref|NP_393782.1| sua5 related protein [Thermoplasma acidophilum DSM 1728] gi|10639445|emb|CAC11447.1| sua5 related protein [Thermoplasma acidophilum] Length = 352 Score = 288 bits (738), Expect = 8e-76, Method: Composition-based stats. Identities = 92/324 (28%), Positives = 151/324 (46%), Gaps = 22/324 (6%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + + A + L +G + PTETVYGL + NP A ++++ K RP+ NPLI H+S + Sbjct: 15 DQIVDAVDALRSGGTVVFPTETVYGLGALASNPEACKKIFIAKGRPSDNPLIVHISSMEQ 74 Query: 70 VKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 ++ D + WPGPLT+V+ I + TA L T R+P L Sbjct: 75 FFSYSDPDDSYPIEGLNKAWPGPLTVVV--RKAQGISDVVTAGLPTVAIRMPDDPIAHDL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 IE G P+A PSAN S + SIT+ + + + + +IID G ++ G+ESTI+++ + Sbjct: 133 IEMAG-PIAAPSANISTRPSITDSRDAIR-FLDGRVDVIIDAGPTRFGIESTIIDITK-R 189 Query: 188 KVRILRPGGLEIETLKRAISV----ELEYCVDETSTPQSPGMLKSHYAPRSQVRL----- 238 +LRPG IE L+ ++ + E +PGM HY+P +++ L Sbjct: 190 PAELLRPGSYAIEDLEPVFGPIVYGDVARGLGEAKIAITPGMKYRHYSPSTKLILAETRE 249 Query: 239 ---RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 + + + ++ + + AII + L A NLF+ DD Sbjct: 250 VFRQILDTVDEDMVVLATEEMVDGHKKAII---IGTDRDLYSVAHNLFSSFIALDDMHVD 306 Query: 296 SIAFSSIPNHGLGIAINNRLERAA 319 G+G A+ NR+ +A+ Sbjct: 307 LALIHPFEERGIGFALMNRIRKAS 330 >gi|262165359|ref|ZP_06033096.1| YrdC family protein [Vibrio mimicus VM223] gi|262025075|gb|EEY43743.1| YrdC family protein [Vibrio mimicus VM223] Length = 329 Score = 288 bits (738), Expect = 8e-76, Method: Composition-based stats. Identities = 95/325 (29%), Positives = 159/325 (48%), Gaps = 14/325 (4%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 Q+ ++T ++ + A + L G +AIPTETVYGLA D+ P A+++++ K RPA +PLI Sbjct: 13 QLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADASQPEAVKQIFSAKGRPANHPLI 71 Query: 62 CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 H + + A V P + LA+ FWPGPLT++L + P+ T L+T RVP Sbjct: 72 VHFGSAEQIAEWATDVAPEAYQLAEAFWPGPLTMLLP--KAEHVSPVVTGGLETVGLRVP 129 Query: 121 CGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 ++++ + +A PSAN ++S T+ + +L + ++ ++DGG + GLEST Sbjct: 130 AHPVLLEILKAHHLAVAAPSANPYKKLSPTSAQQVL-DGLNGKLAAVLDGGECQHGLEST 188 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVE-LEYCVDETSTPQSPGMLKSHYAPRSQVR- 237 IV++ K R+LR G + L + E L+ V + + PG + SHY P++++R Sbjct: 189 IVDLTS-KPFRVLRAGPITASELSAVLGQEVLQPHVHQVAV---PGNVDSHYQPKTRLRV 244 Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNL--SKTGKLKEAAFNLFNYMKIADDSGAS 295 + + + E L K L+ + D G Sbjct: 245 IDHVEYELATQASDVKIALLHLSEQQASEQRLLKPMPKDAKAYGQALYRSLAEVDKWGVD 304 Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320 I P +A+++RL RAA+ Sbjct: 305 EIWLERPPQGEAWLAVHDRLRRAAS 329 >gi|239818049|ref|YP_002946959.1| Sua5/YciO/YrdC/YwlC family protein [Variovorax paradoxus S110] gi|239804626|gb|ACS21693.1| Sua5/YciO/YrdC/YwlC family protein [Variovorax paradoxus S110] Length = 333 Score = 288 bits (738), Expect = 8e-76, Method: Composition-based stats. Identities = 100/335 (29%), Positives = 157/335 (46%), Gaps = 23/335 (6%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 I+ +A+ +A L AG +A PTETVYGL D+ + A+ +++ K RPA +PLI Sbjct: 2 ILDGQSPDAIAEAVRVLRAGGLVAFPTETVYGLGADATSDMAVAGIFKAKGRPADHPLIV 61 Query: 63 HVS----DISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 HV+ + + A + P + L + FWPGPLTL++ + + T Sbjct: 62 HVAAGIKGTEALSRFAQPLPPFAQKLVQAFWPGPLTLIVTRQPG--VAAAAAGGQDTIGL 119 Query: 118 RVPCG-FTKKLIETY---GHP-LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172 R P + L+E G P LA PSANR G++S T +H+ + +IDGG Sbjct: 120 RCPSHPVAQALLEACAEQGVPGLAGPSANRFGRVSPTTAQHVHDEF--GDALTVIDGGAC 177 Query: 173 KIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELE-YCVDETSTPQSPGMLKSHYA 231 ++G+ESTIV+ V +LRPG + ++ A L V ET P++ G L++HYA Sbjct: 178 EVGIESTIVDCSRGAPV-LLRPGLITRAQIEAAAGERLSNREVLETPDPRASGTLEAHYA 236 Query: 232 PRSQVRL-RAIHVNPREALIRFGNVPIKNIENAII------SLNLSKTGKLKEAAFNLFN 284 P +++RL A + ++ G I A + L +A LF Sbjct: 237 PNAKLRLMDAKAIQAGLDVLGPGAAHIAVWTRAEVRSHSQRVLQRRMPDDAAASAHQLFA 296 Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 ++ D G I + P+ + +RL RA+ Sbjct: 297 VLREFDAEGVKLIWVETPPDTPEWEGVRDRLHRAS 331 >gi|70725920|ref|YP_252834.1| hypothetical protein SH0919 [Staphylococcus haemolyticus JCSC1435] gi|68446644|dbj|BAE04228.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 347 Score = 288 bits (738), Expect = 8e-76, Method: Composition-based stats. Identities = 95/329 (28%), Positives = 152/329 (46%), Gaps = 15/329 (4%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 S D L + + G IAIPTETVYGL D+RN A+ +Y+ K RP+ NPLI H+ Sbjct: 14 SPLDYPELENIKQVYNDGGLIAIPTETVYGLGADARNQYAVSNIYQAKGRPSDNPLIVHI 73 Query: 65 SDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 D S + + S + + L FWPGP++ +L L + T L++ R+P Sbjct: 74 HDKSQLDQIVSHLPEEAKCLMDEFWPGPISFILPLRQGY-LCEKVTGGLQSIAVRMPSHP 132 Query: 124 T-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 + +++ P+A PSAN SG+ S T +H+ + + +I I++G S+ GLEST+++ Sbjct: 133 IGRAILQYIDIPIAAPSANVSGRPSPTTFQHVFND-LNGKIDGIVNGDQSEEGLESTVLD 191 Query: 183 VQCEKKVRILRPGGLEIETLKRAISVEL-EYCVDETSTPQSPGMLKSHYAPRSQVR---- 237 + RI RPG + L + EY D S P +PGM HYAP + V Sbjct: 192 CT-QFPFRIARPGSITQAMLNDVFPGSVEEYHYDVNSQPIAPGMKYKHYAPDTPVTMLMH 250 Query: 238 ----LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293 ++ I + A I + +A+ +++A NL+ + D++ Sbjct: 251 LSKPIKTIKEWSKTAFILPETLKQYAPSDALFIKLCKDEKDIRQANHNLYQILHSIDENP 310 Query: 294 -ASSIAFSSIPNHGLGIAINNRLERAAAP 321 + AI NR+ +A Sbjct: 311 SIDQAYIYAFDKTDESEAIMNRIIKATGN 339 >gi|323309143|gb|EGA62370.1| Sua5p [Saccharomyces cerevisiae FostersO] Length = 417 Score = 288 bits (738), Expect = 8e-76, Method: Composition-based stats. Identities = 107/384 (27%), Positives = 173/384 (45%), Gaps = 71/384 (18%) Query: 5 SITDSN---ALRKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 +ITD AL +A + +A PTETVYGL + N ++ +Y+ K RP+ NPL Sbjct: 33 TITDPETETALVEAARIIRDTDETVAFPTETVYGLGGSALNDNSVLSIYKAKNRPSDNPL 92 Query: 61 ICHVSDISMVKK-------------HASVDPLSLHLAKLFWPGPLTLVLDLLST--TDIH 105 I HVS I + + ++ + L WPGPLT++L + S+ + + Sbjct: 93 ITHVSSIDQLNRKVFNQPHLSGTSLFDNIPSIYRPLISSLWPGPLTILLPVPSSEHSALS 152 Query: 106 PLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP 164 L+TA+ T R+P + LI P+A PSAN S + S T H+ + +IP Sbjct: 153 KLTTADQPTFAVRIPANPVARALIALSDTPIAAPSANASTRPSPTLASHVY-HDLKDKIP 211 Query: 165 LIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKR-------AISVELEYCVDET 217 +I+DGG K+G+EST+V+ C + +LRPGG E + + VE + V++ Sbjct: 212 IILDGGACKVGVESTVVDGLCNPPM-LLRPGGFTYEEIVKLGGEAWSLCKVENKKTVEKG 270 Query: 218 STPQSPGMLKSHYAPRSQVRLRAIHVN----------------------------PREAL 249 ++PGM HY+P ++V L H + A+ Sbjct: 271 EKVRTPGMKYRHYSPSAKVVLLVPHCEGDGILKGXDRMERLKRLIETELKANRNIKKIAI 330 Query: 250 IRFGNVPIKNIENAI-----------ISLNLSKTGKLKEAAFNLFNYMKIADDSG-ASSI 297 + + ++++ I I L ++G +E NLF ++ D++ I Sbjct: 331 LTSLKLRDSDLQSKIFNEPDFSSKTFIIERLGQSG--EEIQTNLFAALRKVDENDKVDLI 388 Query: 298 AFSSIPNHGLGIAINNRLERAAAP 321 I G G+A+ NRL +AAA Sbjct: 389 FVEGINEEGEGLAVMNRLRKAAAN 412 >gi|229525692|ref|ZP_04415097.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae bv. albensis VL426] gi|229339273|gb|EEO04290.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae bv. albensis VL426] Length = 329 Score = 288 bits (738), Expect = 8e-76, Method: Composition-based stats. Identities = 97/326 (29%), Positives = 162/326 (49%), Gaps = 16/326 (4%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 Q+ ++T ++ + A + L G +AIPTETVYGLA D+ P A+++++ K RPA +PLI Sbjct: 13 QLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPLI 71 Query: 62 CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 H+ + + A + P + LA+ FWPGPLTL+L + P+ T L++ RVP Sbjct: 72 VHLGSAEQLSEWATDIAPEAYQLAEAFWPGPLTLLLP--KAKQVSPVVTGGLESVGIRVP 129 Query: 121 CGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 +++T+ +A PSAN ++S T+ + +L + + ++DGG + GLEST Sbjct: 130 AHPVLLDILKTHRLAVAAPSANPYKKLSPTSAQQVL-DGLNGRLAAVLDGGECQHGLEST 188 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 IV++ K R+LR G + L + E+ + PG + SHY P+ RLR Sbjct: 189 IVDLTS-KPFRVLRAGPITASELSAVLGQEV--LQPQVHQVAVPGNVDSHYQPK--TRLR 243 Query: 240 AIHVNPREALIRFGNVPIKNIENAIISLNLSK-----TGKLKEAAFNLFNYMKIADDSGA 294 I RE + + I + + + + + + K L+ + D G Sbjct: 244 VIDDLARELATQSNELRIALLHLSALQASEQRLLKPMPQEAKAYGQALYRSLAEVDKWGV 303 Query: 295 SSIAFSSIPNHGLGIAINNRLERAAA 320 I P +A+++RL RAA+ Sbjct: 304 DEIWLERPPQGEAWLAVHDRLRRAAS 329 >gi|15641092|ref|NP_230724.1| hypothetical protein VC1079 [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587076|ref|ZP_01676853.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|121726330|ref|ZP_01679620.1| conserved hypothetical protein [Vibrio cholerae V52] gi|147673908|ref|YP_001216548.1| hypothetical protein VC0395_A0598 [Vibrio cholerae O395] gi|153213572|ref|ZP_01948862.1| conserved hypothetical protein [Vibrio cholerae 1587] gi|153816970|ref|ZP_01969637.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|153821905|ref|ZP_01974572.1| conserved hypothetical protein [Vibrio cholerae B33] gi|227081253|ref|YP_002809804.1| hypothetical protein VCM66_1035 [Vibrio cholerae M66-2] gi|229511006|ref|ZP_04400485.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae B33] gi|229518127|ref|ZP_04407571.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae RC9] gi|229608343|ref|YP_002878991.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae MJ-1236] gi|254848208|ref|ZP_05237558.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|298498815|ref|ZP_07008622.1| conserved hypothetical protein [Vibrio cholerae MAK 757] gi|9655547|gb|AAF94238.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548711|gb|EAX58760.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|121631276|gb|EAX63649.1| conserved hypothetical protein [Vibrio cholerae V52] gi|124115908|gb|EAY34728.1| conserved hypothetical protein [Vibrio cholerae 1587] gi|126512557|gb|EAZ75151.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|126520613|gb|EAZ77836.1| conserved hypothetical protein [Vibrio cholerae B33] gi|146315791|gb|ABQ20330.1| conserved hypothetical protein [Vibrio cholerae O395] gi|227009141|gb|ACP05353.1| conserved hypothetical protein [Vibrio cholerae M66-2] gi|227012895|gb|ACP09105.1| conserved hypothetical protein [Vibrio cholerae O395] gi|229344842|gb|EEO09816.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae RC9] gi|229350971|gb|EEO15912.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae B33] gi|229370998|gb|ACQ61421.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae MJ-1236] gi|254843913|gb|EET22327.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|297543148|gb|EFH79198.1| conserved hypothetical protein [Vibrio cholerae MAK 757] Length = 329 Score = 288 bits (738), Expect = 8e-76, Method: Composition-based stats. Identities = 94/324 (29%), Positives = 164/324 (50%), Gaps = 12/324 (3%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 Q+ ++T ++ + A + L G +AIPTETVYGLA D+ P A+++++ K RPA +PLI Sbjct: 13 QLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPLI 71 Query: 62 CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 H+ + + A + P + LA+ FWPGPLTL+L + P+ T L++ RVP Sbjct: 72 VHLGSAEQLSEWATDIAPEAYQLAEAFWPGPLTLLLP--KAKQVSPVVTGGLESVGIRVP 129 Query: 121 CGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 +++T+ +A PSAN ++S T+ + +L + + ++DGG + GLEST Sbjct: 130 AHPVLLDILKTHRLAVAAPSANPYKKLSPTSAQQVL-DGLNGRLAAVLDGGECQHGLEST 188 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 IV++ K R+LR G + L + E+ + PG + SHY P++++R+ Sbjct: 189 IVDLTS-KPFRVLRAGPITASELSAVLGQEV--LQPQVHQVAVPGNVDSHYQPKTRLRVI 245 Query: 240 ---AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296 A + + +R + + ++ + L + K L+ + D G Sbjct: 246 DDLARELATQSDELRIALLNLSALQASEQRLLKPMPQEAKAYGQALYRSLAEVDKWGVDE 305 Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320 I P +A+++RL RAA+ Sbjct: 306 IWLERPPQGEAWLAVHDRLRRAAS 329 >gi|254225478|ref|ZP_04919088.1| conserved hypothetical protein [Vibrio cholerae V51] gi|125621948|gb|EAZ50272.1| conserved hypothetical protein [Vibrio cholerae V51] Length = 329 Score = 288 bits (738), Expect = 9e-76, Method: Composition-based stats. Identities = 94/324 (29%), Positives = 164/324 (50%), Gaps = 12/324 (3%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 Q+ ++T ++ + A + L G +AIPTETVYGLA D+ P A+++++ K RPA +PLI Sbjct: 13 QLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPLI 71 Query: 62 CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 H+ + + A + P + LA+ FWPGPLTL+L + P+ T L++ RVP Sbjct: 72 VHLGSAEQLSEWATDIAPEAYQLAEAFWPGPLTLLLP--KAKQVSPVVTGGLESVGIRVP 129 Query: 121 CGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 +++T+ +A PSAN ++S T+ + +L + + ++DGG + GLEST Sbjct: 130 AHPVLLDILKTHRLAVAAPSANPYKKLSPTSAQQVL-DGLNGRLAAVLDGGECQHGLEST 188 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 IV++ K R+LR G + L + E+ + PG + SHY P++++R+ Sbjct: 189 IVDLTS-KPFRVLRAGPITASELSAVLGQEVMQ--PQVHQVAVPGNVDSHYQPKTRLRVI 245 Query: 240 ---AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296 A + + +R + + ++ + L + K L+ + D G Sbjct: 246 DDLARELATQSDELRIALLHLSALQASEQRLLKPMPQEAKAYGQALYRSLAEVDKWGVDE 305 Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320 I P +A+++RL RAA+ Sbjct: 306 IWLERPPQGEAWLAVHDRLRRAAS 329 >gi|262171882|ref|ZP_06039560.1| YrdC family protein [Vibrio mimicus MB-451] gi|261892958|gb|EEY38944.1| YrdC family protein [Vibrio mimicus MB-451] Length = 322 Score = 288 bits (737), Expect = 9e-76, Method: Composition-based stats. Identities = 95/325 (29%), Positives = 159/325 (48%), Gaps = 14/325 (4%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 Q+ ++T ++ + A + L G +AIPTETVYGLA D+ P A+++++ K RPA +PLI Sbjct: 6 QLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADASQPEAVKQIFSAKGRPANHPLI 64 Query: 62 CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 H + + A V P + LA+ FWPGPLT++L + P+ T L+T RVP Sbjct: 65 VHFGSAEQIAEWATDVVPEAYQLAEAFWPGPLTMLLP--KAEHVSPVVTGGLETVGLRVP 122 Query: 121 CGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 ++++ + +A PSAN ++S T+ + +L + ++ ++DGG + GLEST Sbjct: 123 AHPVLLEILKAHHLAVAAPSANPYKKLSPTSAQQVL-DGLNGKLAAVLDGGECQHGLEST 181 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVE-LEYCVDETSTPQSPGMLKSHYAPRSQVR- 237 IV++ K R+LR G + L + E L+ V + + PG + SHY P++++R Sbjct: 182 IVDLTS-KPFRVLRAGPITASELSAVLGQEVLQPHVHQVAV---PGNVDSHYQPKTRLRV 237 Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNL--SKTGKLKEAAFNLFNYMKIADDSGAS 295 + + + E L K L+ + D G Sbjct: 238 IDHVENELATQASDVKIALLHLSEQQANEQRLLKPMPQDAKAYGQALYRSLAEVDKWGVD 297 Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320 I P +A+++RL RAA+ Sbjct: 298 EIWLERPPQGEAWLAVHDRLRRAAS 322 >gi|327303106|ref|XP_003236245.1| translation initiation protein Sua5 [Trichophyton rubrum CBS 118892] gi|326461587|gb|EGD87040.1| translation initiation protein Sua5 [Trichophyton rubrum CBS 118892] Length = 445 Score = 288 bits (737), Expect = 9e-76, Method: Composition-based stats. Identities = 104/393 (26%), Positives = 165/393 (41%), Gaps = 85/393 (21%) Query: 10 NALRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 AL +A E + + +P+A PTETVYGL D+ A++ +Y+ K+RP+ NPLI HVS Sbjct: 47 TALIEAAEAIRTSDIPVAFPTETVYGLGADATRSGAVQGIYKAKQRPSDNPLIVHVSSRD 106 Query: 69 MVKKH----------------ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANL 112 +++ +S+ + L K FWPGPL+++L S + P TANL Sbjct: 107 QLERLLMDPKQSNGAIKCRSTSSIPKIYEPLIKRFWPGPLSIILPNPSHLPLAPEVTANL 166 Query: 113 KTACFRVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171 T R+P + LI P+A PSAN S + S T +H+ + + I +I+DGG Sbjct: 167 PTFAARMPSSPLARLLIALADRPVAAPSANASTKPSPTTAQHVFTD-LQGRIEMILDGGP 225 Query: 172 SKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL------EYCVDETSTPQSPGM 225 +G+EST+V+ ILRPGG+ I+ L+ E + + + P++PGM Sbjct: 226 CGVGVESTVVDGLSSPPA-ILRPGGVGIDELRTCPGWEDVKIGYKDGALQGKTAPRAPGM 284 Query: 226 LKSHYAPRSQVRLRAIHVNPREAL-----------------IRFGNVPIKNIENAIIS-- 266 HY+P+++V L +P + G V K + + Sbjct: 285 KYKHYSPKARVVLYEPGQDPNSVMNRIIADINKQPEWANGSAAIGVVRTKTWKKGLGVSQ 344 Query: 267 --------------------------------------LNLSKTGKLKEAAFNLFNYMKI 288 L++ A LF+ ++ Sbjct: 345 VSLSNGESCEATTSAIGSILDIPVECDSINAPSHRINMLDIYLGQNTSSIARGLFSALRS 404 Query: 289 ADDSGASSIAFSSIPNHG--LGIAINNRLERAA 319 D+ I I + L A+ NRL +AA Sbjct: 405 LDERNVPVIYVEGISDTEGDLAAAVMNRLRKAA 437 >gi|229520488|ref|ZP_04409913.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae TM 11079-80] gi|297578682|ref|ZP_06940610.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|229342586|gb|EEO07579.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae TM 11079-80] gi|297536276|gb|EFH75109.1| conserved hypothetical protein [Vibrio cholerae RC385] Length = 329 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 94/324 (29%), Positives = 164/324 (50%), Gaps = 12/324 (3%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 Q+ ++T ++ + A + L G +AIPTETVYGLA D+ P A+++++ K RPA +PLI Sbjct: 13 QLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPLI 71 Query: 62 CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 H+ + + A + P + LA+ FWPGPLTL+L + P+ T L++ RVP Sbjct: 72 VHLGSAEQLSEWATDIAPEAYQLAEAFWPGPLTLLLP--KAKQVSPVVTGGLESVGIRVP 129 Query: 121 CGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 +++T+ +A PSAN ++S T+ + +L + + ++DGG + GLEST Sbjct: 130 AHPVLLDILKTHRLAVAAPSANPYKKLSPTSAQQVL-DGLNGRLAAVLDGGECQHGLEST 188 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 IV++ K R+LR G + L + E+ + PG + SHY P++++R+ Sbjct: 189 IVDLTS-KPFRVLRAGPITASELSAVLGQEV--LQPQVHQVAVPGNVDSHYQPKTRLRVI 245 Query: 240 ---AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296 A + + +R + + ++ + L + K L+ + D G Sbjct: 246 DDLARELATQSDELRIALLHLSALQASEQRLLKPMPQEAKAYGQALYRSLAEVDKWGVDE 305 Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320 I P +A+++RL RAA+ Sbjct: 306 IWLERPPQGEAWLAVHDRLRRAAS 329 >gi|319893067|ref|YP_004149942.1| YrdC/Sua5 family protein [Staphylococcus pseudintermedius HKU10-03] gi|317162763|gb|ADV06306.1| YrdC/Sua5 family protein [Staphylococcus pseudintermedius HKU10-03] gi|323463878|gb|ADX76031.1| translation factor, putative [Staphylococcus pseudintermedius ED99] Length = 350 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 88/321 (27%), Positives = 145/321 (45%), Gaps = 17/321 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L + + L G + +PTETVYGL ++++ TAIR++YE K RP+ NPLI H+ D + Sbjct: 22 LPEIVKTLQDGGLVVLPTETVYGLGGNAKDDTAIRKIYEAKGRPSDNPLIVHIHDTDQLD 81 Query: 72 KH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 A + + L + FWPGP+T +L L + T L + R+P L++ Sbjct: 82 DFVADISESTRKLMEAFWPGPITFILPLKQGF-LCDRVTGGLNSVAVRMPSHPVALALLK 140 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+A PSAN SG+ S T +H + + I+ S GLEST+V+ Sbjct: 141 AVDLPIAAPSANLSGRPSPTTFEHAF-HDLNHRVEGIMRSTQSDAGLESTVVDCTS-FPF 198 Query: 190 RILRPGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQVRLRA-------I 241 RI RPG + L + +E T P +PGM HYAP + +++ Sbjct: 199 RIARPGTITRNMLNDILPQSVEVHSPLATEKPIAPGMKYRHYAPSTPLKMITQLNAPIHE 258 Query: 242 HVNPREALIRFGNVPIKN--IENAIISLNLSKT-GKLKEAAFNLFNYMKIADDSG-ASSI 297 + + I F K + + + +S++ ++ A NL++ + D Sbjct: 259 DAHEDWSKIAFIVPETKKKFLPASAQVIVISESESDIQGANHNLYDVLHQLDQLNDVDMA 318 Query: 298 AFSSIPNHGLGIAINNRLERA 318 ++ A+ NR+ +A Sbjct: 319 YIYGFEDNFDTEALRNRMLKA 339 >gi|262402565|ref|ZP_06079126.1| YrdC family protein [Vibrio sp. RC586] gi|262351347|gb|EEZ00480.1| YrdC family protein [Vibrio sp. RC586] Length = 321 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 91/324 (28%), Positives = 157/324 (48%), Gaps = 12/324 (3%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 Q+ ++T ++ + A + L G +AIPTETVYGLA D+ P A+++++ K RPA +PLI Sbjct: 5 QLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPLI 63 Query: 62 CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 H+ + + A + + LA+ FWPGPLT++L + P+ T L+T RVP Sbjct: 64 VHLGSAEQLCEWATDIADEAYQLAQAFWPGPLTMLLP--KAEHVSPVVTGGLETVGLRVP 121 Query: 121 CGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 ++++ + +A PSAN ++S T+ + +L + ++ ++DGG + GLEST Sbjct: 122 AHPVLLEILKAHHLAVAAPSANPYKKLSPTSAQQVL-DGLNGKLAAVLDGGECQHGLEST 180 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVR-L 238 IV++ K +R+LR G + L + E+ + PG + SHY P++++R + Sbjct: 181 IVDLTS-KPIRVLRAGPITASELSAVLGQEV--LQPQVHQVAVPGNVDSHYQPKTRLRVI 237 Query: 239 RAIHVNPREALIRFGNVPIKNIENAIISLNL--SKTGKLKEAAFNLFNYMKIADDSGASS 296 + + E L K L+ + D G Sbjct: 238 DNVQNEFATQASDVKIALLHLSEQQANEQRLLKPMPQDAKAYGQALYRSLAEVDKWGVDE 297 Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320 I P +A+++RL RAA+ Sbjct: 298 IWLERPPQGEAWLAVHDRLRRAAS 321 >gi|153824989|ref|ZP_01977656.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|149741501|gb|EDM55531.1| conserved hypothetical protein [Vibrio cholerae MZO-2] Length = 329 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 97/326 (29%), Positives = 162/326 (49%), Gaps = 16/326 (4%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 Q+ ++T ++ + A + L G +AIPTETVYGLA D+ P A+++++ K RPA +PLI Sbjct: 13 QLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPLI 71 Query: 62 CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 H+ + + A + P + LA+ FWPGPLTL+L + P+ T L++ RVP Sbjct: 72 VHLGSAEQLSEWATDIAPEAYQLAEAFWPGPLTLLLP--KAKQVSPVVTGGLESVGIRVP 129 Query: 121 CGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 +++T+ +A PSAN ++S T+ + +L + + ++DGG + GLEST Sbjct: 130 AHPVLLDILKTHRLAVAAPSANPYKKLSPTSAQQVL-DGLNGRLAAVLDGGECQHGLEST 188 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 IV++ K R+LR G + L + E+ + PG + SHY P+ RLR Sbjct: 189 IVDLTS-KPFRVLRAGPITASELSAVLGQEV--LQPQVHQVAVPGNVDSHYQPK--TRLR 243 Query: 240 AIHVNPREALIRFGNVPIKNIENAIISLNLSK-----TGKLKEAAFNLFNYMKIADDSGA 294 I RE + + I + + + + + + K L+ + D G Sbjct: 244 VIDDLARELATQSDELHIALLHLSALQASEQRLLKPMPQEAKAYGQALYRSLAEVDKWGV 303 Query: 295 SSIAFSSIPNHGLGIAINNRLERAAA 320 I P +A+++RL RAA+ Sbjct: 304 DEIWLERPPQGEAWLAVHDRLRRAAS 329 >gi|317495537|ref|ZP_07953905.1| Sua5/YciO/YrdC/YwlC family protein [Gemella moribillum M424] gi|316914351|gb|EFV35829.1| Sua5/YciO/YrdC/YwlC family protein [Gemella moribillum M424] Length = 343 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 99/338 (29%), Positives = 164/338 (48%), Gaps = 23/338 (6%) Query: 2 QIMSITDSNALRKACEFL----DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 +I++I+ SN + L IAIPTETVYGL+ D+ + A+ ++YE K RP+ Sbjct: 4 EIINISKSNNKEEIYNKLITYYKDNKLIAIPTETVYGLSADATSDEAVCKIYEAKGRPSD 63 Query: 58 NPLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 NPLI H +++ + D L + FWPGP+TL+L+ I +A L T Sbjct: 64 NPLIVHFYEMNQLNDIVDYQDERVDKLIENFWPGPMTLILNAKENNGISKKVSAGLSTLA 123 Query: 117 FRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R+P +++++ LA PSAN SG+ S T +H+ + +I +II+ S IG Sbjct: 124 VRMPSNKTARQILKETKVLLAAPSANTSGKPSPTKFEHVY-HDLNGKIDVIIEDEQSDIG 182 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDE----TSTPQSPGMLKSHYA 231 LEST+++ + I RPG + E ++ + + DE T TP +PGM HY+ Sbjct: 183 LESTVIDCT-RTPLVIARPGEITKEDIEGILGLGSVKYNDEVMVDTQTPIAPGMKYRHYS 241 Query: 232 PRSQVRLRAIHVNPREALI-----RFGNVPIKNIENAIISLNLSK------TGKLKEAAF 280 P +++ + + + G + K+ E +LN+S ++++ Sbjct: 242 PEAELLYYEDSLEKALEFLKTKNKKTGFITYKSNEYLFENLNISVKYLADNEKSVEQSNK 301 Query: 281 NLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERA 318 NL+N ++ D+ I I IA+ NRL +A Sbjct: 302 NLYNILREFDEEKVEEIYILPIKETKENIALLNRLNKA 339 >gi|255745495|ref|ZP_05419443.1| YrdC family protein [Vibrio cholera CIRS 101] gi|262158430|ref|ZP_06029546.1| YrdC family protein [Vibrio cholerae INDRE 91/1] gi|262170292|ref|ZP_06037979.1| YrdC family protein [Vibrio cholerae RC27] gi|255736570|gb|EET91967.1| YrdC family protein [Vibrio cholera CIRS 101] gi|262021307|gb|EEY40021.1| YrdC family protein [Vibrio cholerae RC27] gi|262029871|gb|EEY48519.1| YrdC family protein [Vibrio cholerae INDRE 91/1] Length = 322 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 94/324 (29%), Positives = 164/324 (50%), Gaps = 12/324 (3%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 Q+ ++T ++ + A + L G +AIPTETVYGLA D+ P A+++++ K RPA +PLI Sbjct: 6 QLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPLI 64 Query: 62 CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 H+ + + A + P + LA+ FWPGPLTL+L + P+ T L++ RVP Sbjct: 65 VHLGSAEQLSEWATDIAPEAYQLAEAFWPGPLTLLLP--KAKQVSPVVTGGLESVGIRVP 122 Query: 121 CGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 +++T+ +A PSAN ++S T+ + +L + + ++DGG + GLEST Sbjct: 123 AHPVLLDILKTHRLAVAAPSANPYKKLSPTSAQQVL-DGLNGRLAAVLDGGECQHGLEST 181 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 IV++ K R+LR G + L + E+ + PG + SHY P++++R+ Sbjct: 182 IVDLTS-KPFRVLRAGPITASELSAVLGQEV--LQPQVHQVAVPGNVDSHYQPKTRLRVI 238 Query: 240 ---AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296 A + + +R + + ++ + L + K L+ + D G Sbjct: 239 DDLARELATQSDELRIALLNLSALQASEQRLLKPMPQEAKAYGQALYRSLAEVDKWGVDE 298 Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320 I P +A+++RL RAA+ Sbjct: 299 IWLERPPQGEAWLAVHDRLRRAAS 322 >gi|323337544|gb|EGA78789.1| Sua5p [Saccharomyces cerevisiae Vin13] Length = 426 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 108/382 (28%), Positives = 168/382 (43%), Gaps = 67/382 (17%) Query: 5 SITDSN---ALRKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 +ITD AL +A + +A PTETVYGL + N ++ +Y+ K RP+ NPL Sbjct: 42 TITDPETETALVEAARIIRDTDETVAFPTETVYGLGGSALNDNSVLSIYKAKNRPSDNPL 101 Query: 61 ICHVSDISMVKK-------------HASVDPLSLHLAKLFWPGPLTLVLDLLST--TDIH 105 I HVS I + + ++ + L WPGPLT++L + S+ + + Sbjct: 102 ITHVSSIDQLNRKVFNQPHLSGTSLFDNIPSIYRPLISSLWPGPLTILLPVPSSEHSALS 161 Query: 106 PLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP 164 L+TA+ T R+P + LI P+A PSAN S + S T H+ + +IP Sbjct: 162 KLTTADQPTFAVRIPANPVARALIALSDTPIAAPSANASTRPSPTLASHVY-HDLKDKIP 220 Query: 165 LIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKR-------AISVELEYCVDET 217 +I+DGG K+G+EST+V+ C + +LRPGG E + + VE + V++ Sbjct: 221 IILDGGACKVGVESTVVDGLCNPPM-LLRPGGFTYEXIVKLGGEAWSLCKVENKKTVEKG 279 Query: 218 STPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNV------------PIKNIENAII 265 ++PGM HY+P ++V L H L + +NI+ I Sbjct: 280 EKVRTPGMKYRHYSPSAKVVLLVPHCEGDGILKGVDRMERLKRLIETELKANRNIKKIAI 339 Query: 266 SLNLSKTG-KL------------------------KEAAFNLFNYMKIADDSG-ASSIAF 299 +L L +E NLF ++ D++ I Sbjct: 340 LTSLKLRDSDLQSKIFNEPDFSSKTFIIERLGQSGEEIQTNLFAALRKVDENDKVDLIFV 399 Query: 300 SSIPNHGLGIAINNRLERAAAP 321 I G G+A+ NRL +AAA Sbjct: 400 EGINEEGEGLAVMNRLRKAAAN 421 >gi|134095773|ref|YP_001100848.1| putative Sua5/YciO/YrdC/YwlC family protein [Herminiimonas arsenicoxydans] gi|133739676|emb|CAL62727.1| Conserved hypothetical protein, putative translation factor [Herminiimonas arsenicoxydans] Length = 339 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 90/326 (27%), Positives = 150/326 (46%), Gaps = 19/326 (5%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D A+ A L+ G +A PTETVYGL D+ NP A+ ++Y+ K RP+ +P+I H++ Sbjct: 6 DLTAIADAARRLERGELVAFPTETVYGLGADAENPLAVAKIYQAKGRPSNHPVIVHLAPE 65 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126 + + A V P + L FWPGPLTL+L I + R P + Sbjct: 66 ADIAYWAKDVSPEARQLIAAFWPGPLTLILKR--ANHIPDTVAGGQDSIGLRCPSHPVAQ 123 Query: 127 LI----ETYGHPLAIPSANRSGQISITNVKHILSSSIC---KEIPLIIDGGISKIGLEST 179 + + +A PSAN+ G +S T +H+ + + ++DGG S++G+EST Sbjct: 124 ALLRNFKQGKGGIAAPSANKFGHVSPTTAQHVRDEFVDDTNGLLTCVLDGGQSEVGIEST 183 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 IV++ + V +LRPG + + + V + + + P++ G L++HYAP + V L Sbjct: 184 IVDMSRGRAV-LLRPGHISAAQIGAVLGV--APLLPDAAAPRASGTLEAHYAPHTPVVLL 240 Query: 240 AIHVNPREA------LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293 R + + ++ + A +L+ ++ DD+ Sbjct: 241 EREQMHEALQQLHAHGKRVALMHHSFTATVPAAASIFLPAQPALYAHDLYAALRAMDDAH 300 Query: 294 ASSIAFSSIPNHGLGIAINNRLERAA 319 A I S P +N+RL RAA Sbjct: 301 ADVIMVESPPGDEAWNGVNDRLRRAA 326 >gi|327483788|gb|AEA78195.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae LMA3894-4] Length = 322 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 94/324 (29%), Positives = 164/324 (50%), Gaps = 12/324 (3%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 Q+ ++T ++ + A + L G +AIPTETVYGLA D+ P A+++++ K RPA +PLI Sbjct: 6 QLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPLI 64 Query: 62 CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 H+ + + A + P + LA+ FWPGPLTL+L + P+ T L++ RVP Sbjct: 65 VHLGSAEQLSEWATDIAPEAYQLAEAFWPGPLTLLLP--KAKQVSPVVTGGLESVGIRVP 122 Query: 121 CGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 +++T+ +A PSAN ++S T+ + +L + + ++DGG + GLEST Sbjct: 123 AHPVLLDILKTHRLAVAAPSANPYKKLSPTSAQQVL-DGLNGRLAAVLDGGECQHGLEST 181 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 IV++ K R+LR G + L + E+ + PG + SHY P++++R+ Sbjct: 182 IVDLTS-KPFRVLRAGPITASELSAVLGQEV--LQPQVHQVAVPGNVDSHYQPKTRLRVI 238 Query: 240 ---AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296 A + + +R + + ++ + L + K L+ + D G Sbjct: 239 DDLARELATQSDELRIALLHLSALQASEQRLLKPMPQEAKAYGQALYRSLAEVDKWGVDE 298 Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320 I P +A+++RL RAA+ Sbjct: 299 IWLERPPQGEAWLAVHDRLRRAAS 322 >gi|258626302|ref|ZP_05721149.1| conserved hypothetical protein [Vibrio mimicus VM603] gi|258581354|gb|EEW06256.1| conserved hypothetical protein [Vibrio mimicus VM603] Length = 322 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 95/325 (29%), Positives = 159/325 (48%), Gaps = 14/325 (4%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 Q+ ++T ++ + A + L G +AIPTETVYGLA D+ P A+++++ K RPA +PLI Sbjct: 6 QLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADASQPEAVKQIFSAKGRPANHPLI 64 Query: 62 CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 H + + A V P + LA+ FWPGPLT++L + P+ T L+T RVP Sbjct: 65 VHFGSAEQIAEWATDVAPEAYQLAEAFWPGPLTMLLP--KAEHVSPVVTGGLETVGLRVP 122 Query: 121 CGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 ++++ + +A PSAN ++S T+ + +L + ++ ++DGG + GLEST Sbjct: 123 AHPVLLEILKAHHLAVAAPSANPYKKLSPTSAQQVL-DGLNGKLAAVLDGGECQHGLEST 181 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVE-LEYCVDETSTPQSPGMLKSHYAPRSQVR- 237 IV++ K R+LR G + L + E L+ V + + PG + SHY P++++R Sbjct: 182 IVDLTS-KPFRVLRAGPITASELSAVLGQEVLQPHVHQVAV---PGNVDSHYQPKTRLRV 237 Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNL--SKTGKLKEAAFNLFNYMKIADDSGAS 295 + + + E L K L+ + D G Sbjct: 238 IDNVQNELATQASDVKIALLHLSEQQASEQRLLKPMPQDAKAYGQALYRSLAEVDKWGVD 297 Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320 I P +A+++RL RAA+ Sbjct: 298 EIWLERPPQGEAWLAVHDRLRRAAS 322 >gi|159485276|ref|XP_001700672.1| predicted protein [Chlamydomonas reinhardtii] gi|158272104|gb|EDO97910.1| predicted protein [Chlamydomonas reinhardtii] Length = 340 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 110/338 (32%), Positives = 157/338 (46%), Gaps = 32/338 (9%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A L G +AIPTETVYGLA ++ + A+ R+Y K RPA NPLI HVS ++M+ Sbjct: 1 IARAASILAEGGVVAIPTETVYGLAANALSAEAVGRVYAAKNRPADNPLIIHVSSLAMLA 60 Query: 72 KHA----SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + P+ + + WPGPLT++L + T L T R+P Sbjct: 61 GLYPPGWELPPIYEPVLRDLWPGPLTVLLPRSP--LVPDAVTCGLPTMAVRMPAHPVALA 118 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LI G PLA PSAN SG+ S T KH+ + IPLI+DGG G+EST+++ Sbjct: 119 LIAACGFPLAAPSANSSGRPSPTLAKHVAADLGGGVIPLILDGGACSCGVESTVLDAL-R 177 Query: 187 KKVRILRPGGLEIETLKRAISVE-LEYCVDET--STPQSPGMLKSHYAPRSQVRL----- 238 ILRPGG+ E L +E L+ D + P +PGM HY+P + V L Sbjct: 178 SPPAILRPGGVTREALVGYRGLEALQDFTDAALEAAPTTPGMKYRHYSPTAPVILLDPSP 237 Query: 239 ----------------RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNL 282 A+ V A G +I L + E A L Sbjct: 238 PAAAATAAATAAAAAAVAVAVAVAVAAATAGAGTRAVAAQRVIEYVLGHVSRPAEVATEL 297 Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 F ++ D++G I + + G G+A+ NRL +AA+ Sbjct: 298 FAGLRALDEAGCVVIVVEGVADEGAGVAVMNRLRKAAS 335 >gi|86606322|ref|YP_475085.1| Sua5/YciO/YrdC/YwlC family protein [Synechococcus sp. JA-3-3Ab] gi|86554864|gb|ABC99822.1| Sua5/YciO/YrdC/YwlC family protein [Synechococcus sp. JA-3-3Ab] Length = 366 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 108/356 (30%), Positives = 166/356 (46%), Gaps = 42/356 (11%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 QI+ T + + A E L G +AIPTETVYGLA N A+ ++ K+RP NPLI Sbjct: 4 QILPPTPEH-IALAAEALRRGQLVAIPTETVYGLAGHGLNEQAVAEIFAAKERPRFNPLI 62 Query: 62 CHVS---DISMVKKHA----SVDPLSLH----LAKLFWPGPLTLVLDLLSTTDIHPLSTA 110 H+ D+ ++ + P + L FWPGPLTLVL + + L T+ Sbjct: 63 LHLPAGLDLETLQGWLVDLEAFTPAARARLGSLVDTFWPGPLTLVLP--KGSRVPDLVTS 120 Query: 111 NLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169 L T R+P + L+ PLA PSANR G++S T+ + + + + IP I+DG Sbjct: 121 GLPTVALRMPAHPVAQALLRAVQVPLAAPSANRFGRLSPTSAQAVYAE-LAGRIPYILDG 179 Query: 170 GISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLK 227 G +GLEST++ + + +LRPGG+ E L+ +++ L D +P++PG L Sbjct: 180 GECSVGLESTVLKLSPDGTPTLLRPGGIPREVLESHLNLPLSSPPAPDGKESPEAPGQLS 239 Query: 228 SHYAPRSQVRL-----RAIHVNPREALIRFG------NVPIKNIENAIISLNLSK----- 271 SHYAP + L + + L R + + ++ +LS+ Sbjct: 240 SHYAPGKPIWLLPTAFAQLQPEDWQQLRRLATGHSHLGILSFAAKPEALAESLSRHCPEV 299 Query: 272 -------TGKLKEAAFNLFNYMKIADDSGASSIAFSSIP-NHGLGIAINNRLERAA 319 AA F ++ D+ A+ + P GLG AI +RL RA+ Sbjct: 300 TFTLECLGPDPNSAAHAFFASLRRLDEGAATLLLAEPPPVVTGLGYAIMDRLRRAS 355 >gi|302694065|ref|XP_003036711.1| hypothetical protein SCHCODRAFT_63438 [Schizophyllum commune H4-8] gi|300110408|gb|EFJ01809.1| hypothetical protein SCHCODRAFT_63438 [Schizophyllum commune H4-8] Length = 397 Score = 286 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 108/348 (31%), Positives = 157/348 (45%), Gaps = 53/348 (15%) Query: 24 PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK----KHASVDPL 79 P+ PTETVYGL + + +A ++ K RPA NPLI HVS +SM+ + P Sbjct: 45 PVVFPTETVYGLGALALDSSAASLIFSTKGRPADNPLIVHVSSMSMLHSILPPDYTFPPS 104 Query: 80 SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIP 138 L K FWPGPLT++ + + + TA T R+P + LI PLA P Sbjct: 105 YQVLMKHFWPGPLTMLFPRHAAI-VPDIITAGQDTVAIRMPSHPVARALIAVANAPLAAP 163 Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN-VQCEKKVRILRPGGL 197 SAN SG+ S T +H+ + ++ +I+DGG +GLEST+V+ + + +R+LRPGG+ Sbjct: 164 SANSSGKPSPTRAEHVYRD-LGDKVDVILDGGPCGVGLESTVVDGLNADGHLRVLRPGGV 222 Query: 198 EIETLKRAISVELEYC-------------VDET--STPQSPGMLKSHYAPRSQVRLRAIH 242 +E L+R + EL+ DE + P +PGM HY+P V L Sbjct: 223 TVEDLERTLREELQASGSVPRVLVHRRDYRDEAMEAAPTTPGMKYKHYSPSVPVILVNTL 282 Query: 243 VNPREALIRF----------GNVPIKNIENAI-----------------ISLNLSKTGKL 275 NP E R P + I + IS L GK+ Sbjct: 283 SNPSEPKQRQTIDSLVASLQARYPARPIHAGLMTPDDSRLAQVLHTHESISWRLFPLGKV 342 Query: 276 KE---AAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 E A LF+ D G +I + G+A+ NR+ +AA Sbjct: 343 SEPAVIAQRLFDGFLTLDREGVDAILIEGVAEEEEGLAVMNRVRKAAG 390 >gi|320582245|gb|EFW96463.1| hypothetical protein HPODL_2120 [Pichia angusta DL-1] Length = 380 Score = 286 bits (734), Expect = 3e-75, Method: Composition-based stats. Identities = 110/355 (30%), Positives = 167/355 (47%), Gaps = 41/355 (11%) Query: 3 IMSITDSN---ALRKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58 ++ITD L A + L + P+ETVYGL S + +++ +Y K RPA N Sbjct: 25 TLTITDPETKQNLEYAADILRNTHHAVGFPSETVYGLGASSLSSESVKSIYAAKNRPADN 84 Query: 59 PLICHVSDISMVKK-----HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP---LSTA 110 PLI HVS I +K+ + + L + FWPGPLT++L + P L T+ Sbjct: 85 PLISHVSSIDQLKRKLMVPGQEIPEIYAPLIEKFWPGPLTILLPMPENVHDSPISQLVTS 144 Query: 111 NLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169 T R+P + LI PLA PSAN S + S T H+ + IPLI+DG Sbjct: 145 GQPTFAVRMPQNPVARALIYISDLPLAAPSANASTRPSPTTAAHVY-HDLKGRIPLILDG 203 Query: 170 GISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS------VELEYCVDETSTPQSP 223 G S +GLEST+V+ C+ + +LRPGG+ +E +K+A V + + ++P Sbjct: 204 GPSDVGLESTVVDGLCDPPM-LLRPGGISLEQIKQAGGPRWQNIVVAKKTAGKLEPVRTP 262 Query: 224 GMLKSHYAPRSQVRL----------------RAIHVNPREALIRFGNVPIKNIENAIISL 267 GM HY+P ++V L + N + AL++ N + +IS Sbjct: 263 GMKYRHYSPTARVVLFNNCGDGKEKVKAYLEQNNLQNKKVALLKTRRFAPANDISPLISY 322 Query: 268 N--LSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + L +G E NLF+ ++ D I + G+AI NRL +AA+ Sbjct: 323 DGTLGTSGD--EIQRNLFSALRALDAEEYDYILIEGVDETAEGLAIMNRLSKAAS 375 >gi|50290007|ref|XP_447435.1| hypothetical protein [Candida glabrata CBS 138] gi|49526745|emb|CAG60372.1| unnamed protein product [Candida glabrata] Length = 422 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 103/379 (27%), Positives = 162/379 (42%), Gaps = 63/379 (16%) Query: 2 QIMSITDSNALRKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 ++ +AL KA + +A PTETVYGL S N ++R +Y+ K RP+ NPL Sbjct: 43 EVNDAPSRDALLKAAHIIRDTEETVAFPTETVYGLGGSSLNDNSVRNIYKAKNRPSDNPL 102 Query: 61 ICHVSDISMVKK-----------HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI--HPL 107 I HVS I + + ++ + L + WPGPLT++L + ++ L Sbjct: 103 ITHVSSIDQLNRKIYNDYEDGDILRNIPKIYHPLIEKLWPGPLTILLPIPPERNVSLSKL 162 Query: 108 STANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLI 166 +T + T R+P + LI P+A PSAN S + S T H+ + IPLI Sbjct: 163 TTGDQPTFAVRIPANSIARALIALADTPIAAPSANASTRPSPTLASHVY-HDLKGRIPLI 221 Query: 167 IDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL-------KRAISVELEYCVDETST 219 IDGG +G+EST+V+ C +LRPGG E + R VE + + E Sbjct: 222 IDGGACNVGVESTVVDGLCLPPA-LLRPGGFTYEDILHLGGESWRNCKVENKKTLSEGEK 280 Query: 220 PQSPGMLKSHYAP--------------------RSQVRLRAIHVNPREALIR-------- 251 ++PGM HYAP + +V L + + + + Sbjct: 281 VRTPGMKYKHYAPSAKVIVLLPNDSDTQMQLIDKMKVFLSSHQPDIIDKKVAIMTTLKLT 340 Query: 252 --------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDS-GASSIAFSSI 302 F + K + + L +G + NLF ++ AD++ +I I Sbjct: 341 PILNEISLFASSNYKGTKTEFLVSELGASG--EAIQANLFAALRKADETDNVDTIIVEGI 398 Query: 303 PNHGLGIAINNRLERAAAP 321 G+A+ NRL +A+ Sbjct: 399 SETSEGLAVMNRLRKASGG 417 >gi|148658404|ref|YP_001278609.1| Sua5/YciO/YrdC/YwlC family protein [Roseiflexus sp. RS-1] gi|148570514|gb|ABQ92659.1| translation factor SUA5 [Roseiflexus sp. RS-1] Length = 356 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 104/340 (30%), Positives = 162/340 (47%), Gaps = 26/340 (7%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 ++ + + +A + AG +A PTETVYGL + + A+ R++ K+RPA +P+I H+ Sbjct: 15 AVPEPQIIAEAAAVIRAGGLVAFPTETVYGLGASALDEQAVARIFHAKERPATDPIIAHI 74 Query: 65 SDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 +D+ + A V P + LA+ FWPGPLTLV+ + +A T R+P Sbjct: 75 ADLCQLDVLARDVPPAAHALARRFWPGPLTLVVLRRPI--VPANLSAGRATVAVRMPAHP 132 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 LI G P+A PSANR + S T H+L + I L++DGG + IG+ES++V+ Sbjct: 133 VALALIAASGVPIAAPSANRFSRPSPTTAAHVL-DDLNGRIDLVLDGGATHIGVESSVVD 191 Query: 183 VQCEKKVRILRPGGLEIETLKRA---ISVELEYCVDETSTPQSPGMLKSHYAPRSQV--- 236 + + V +LRPGG+ I L+ ++ Y + +PGML HYAP + + Sbjct: 192 LTVDPPV-LLRPGGVTITALREVLPELTFAPRYLAGDEEALPAPGMLLRHYAPNATLTVV 250 Query: 237 ---------RLRAIHVNPREALIRFGNVPIKNIENAIISL-----NLSKTGKLKEAAFNL 282 R+RA A +R G + A+ L L + A L Sbjct: 251 AGDHAAALERIRAEAQAAINAGLRVGVLAFDEDAPALADLPVRIVQLGPAANPEVVAQRL 310 Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 F ++ + +G I GL + I +RL RAA R Sbjct: 311 FAALRAIEQTGVDLILARDPGQEGLSLTIRDRLVRAAEGR 350 >gi|314935935|ref|ZP_07843285.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus hominis subsp. hominis C80] gi|313655941|gb|EFS19683.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus hominis subsp. hominis C80] Length = 346 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 93/325 (28%), Positives = 151/325 (46%), Gaps = 18/325 (5%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + L + + G IAIPTETVYGL +++N A+ +Y+ K RP+ NPLI H+ S Sbjct: 19 SQLAEIKTIYENGGLIAIPTETVYGLGANAKNEQAVENIYKAKGRPSDNPLIVHIYKQSQ 78 Query: 70 VKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKL 127 + S P + L FWPGP++ +L L + T L + R+P + + Sbjct: 79 MDAFVSTIPKEAQKLMNAFWPGPISFILPLKQGY-LCEKVTGGLNSIAVRMPSHPIGRAI 137 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E P+A PSAN SG+ S T +H+ + + +I I++G S+ GLEST+++ + Sbjct: 138 LEYVDLPIAAPSANISGRPSPTTFQHVYND-LNGKIDGIVNGDQSEEGLESTVLDCT-QF 195 Query: 188 KVRILRPGGLEIETLKRAISVE-LEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246 RI RPG + L + ++Y ++ P +PGM HYAP++ V + P Sbjct: 196 PFRIARPGSITQTMLNHVVPHSVIQYDYNQLERPIAPGMKYKHYAPKTPVYMLTEFTQPI 255 Query: 247 EALIRFGNVPI------KNIENAIISLNLSKT-GKLKEAAFNLFNYMKIADDSGASSI-- 297 L G + K + ++L + +K A NL+ + DD I Sbjct: 256 SELNESGLAFVLPSSMKKYVPKDCTFISLCENQRDVKGANHNLYKILHDIDDD--ERIQK 313 Query: 298 -AFSSIPNHGLGIAINNRLERAAAP 321 + N A+ NR+ +A Sbjct: 314 AFIYTFDNIEGSEAVMNRMMKATGN 338 >gi|297170667|gb|ADI21691.1| putative translation factor (SUA5) [uncultured Verrucomicrobiales bacterium HF0130_14P10] Length = 337 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 110/338 (32%), Positives = 174/338 (51%), Gaps = 23/338 (6%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 MQ L L +G +A+PTETVYGLA + N A+ +++E K+RP +PL Sbjct: 1 MQKHYGVSPEELSHVAGLLHSGQIVALPTETVYGLACLALNKLAVAKVFEAKQRPINDPL 60 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 I HVSD++ + D ++ L+++FWPGPLTLVL T + + T+ L T R P Sbjct: 61 IIHVSDLTEAQSVCRPDHRAILLSEVFWPGPLTLVLP--KTKIVPTIVTSGLSTVAVRSP 118 Query: 121 CGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 ++++ PLA PSAN G+IS T +H + S E P ++DGG +K+G+EST Sbjct: 119 ANPVFREILNLVSAPLAAPSANPFGKISPTRAEH-IKQSFGDEHPPVVDGGPTKLGIEST 177 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAIS-----VELEYCVDETSTPQSPGMLKSHYAPRS 234 +V++ + RILRPG ++ E + + EL+ D+ P SPG+L HY P S Sbjct: 178 VVDLSSSRT-RILRPGPIDREAISAILGEEPEIPELKASSDKPKKPLSPGLLAKHYQPES 236 Query: 235 QVRLRAIHVNPREALIRFGNVPIKNI-------------ENAIISLNLSKTGKLKEAAFN 281 +++ + + L ++P + ++LS+ G +E A N Sbjct: 237 PLQVFSNTEDLMAFLKMEPSIPAATFVITHSPLNENCFPSKGLKFMHLSEFGDPEEIAKN 296 Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 LF ++ AD I +P G+G A+N+RL +A+ Sbjct: 297 LFARLREADAHSPPLILCPLLPETGIGSAVNDRLRKAS 334 >gi|114332280|ref|YP_748502.1| Sua5/YciO/YrdC/YwlC family protein [Nitrosomonas eutropha C91] gi|114309294|gb|ABI60537.1| translation factor SUA5 [Nitrosomonas eutropha C91] Length = 341 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 100/329 (30%), Positives = 160/329 (48%), Gaps = 28/329 (8%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + A L G IA PTETVYGL D +P AI+++++IK RP +PLI H + + Sbjct: 17 EQITAAVASLRKGNVIAFPTETVYGLGADISHPQAIQKIFDIKGRPPDHPLIVHFAKSAE 76 Query: 70 VKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 ++ A P +L LAK FWPGPLTLVL + I T T RVP +L Sbjct: 77 LEFWAENIPTTALMLAKHFWPGPLTLVLP--KSRHIPLSVTGGQDTVGLRVPSHPVALRL 134 Query: 128 IETYGH--PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +E G +A PSANR G +S T+ H+ I +I+DGG ++GLESTIV+ Sbjct: 135 LEELGGYKAIAAPSANRFGFVSPTSADHVKKE-FGDRIDIILDGGSCEVGLESTIVSCI- 192 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245 + +V ILRPGG+ + +++ + ++ S ++PG L SHYA + + + + Sbjct: 193 DNEVAILRPGGISVLSIENVLKQKIFVRSHGNS-IRAPGSLTSHYATTTPLEI----CHG 247 Query: 246 REALIRFGNVPIKNIENAIISLNLSK---------------TGKLKEAAFNLFNYMKIAD 290 +R + + I A+I ++ + +L+ ++ D Sbjct: 248 ESLFLRSSILLQQGIRTAVIVRSVREDFVQDANNKLHCVFMPNDPVRFGRDLYATLRRLD 307 Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAA 319 + I + P++ +A+ +RL RA+ Sbjct: 308 NENFQQILVEAPPDNLEWLAVADRLNRAS 336 >gi|326471329|gb|EGD95338.1| translation initiation protein Sua5 [Trichophyton tonsurans CBS 112818] Length = 445 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 103/393 (26%), Positives = 163/393 (41%), Gaps = 85/393 (21%) Query: 10 NALRKACEFLDAGLP-IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 AL +A E + +A PTETVYGL D+ A++ +Y+ K+RP+ NPLI HVS Sbjct: 47 TALLEAAEAIRNSDIPVAFPTETVYGLGADATRSRAVQGIYKAKQRPSDNPLIVHVSSRD 106 Query: 69 MVKKH----------------ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANL 112 +++ + + + L + FWPGPL+++L S + P TANL Sbjct: 107 QLERLLMDPKQSNGPIKCHSTSPIPKIYEPLIERFWPGPLSIILPNPSHRPLAPEVTANL 166 Query: 113 KTACFRVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171 T R+P + LI P+A PSAN S + S T +H+ + + I I+DGG Sbjct: 167 PTFAARMPSSPLARLLIALADRPVAAPSANASTKPSPTTAQHVFTD-LQGRIETILDGGP 225 Query: 172 SKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL------EYCVDETSTPQSPGM 225 +G+EST+V+ ILRPGG+ I+ L+ E + + + P++PGM Sbjct: 226 CGVGVESTVVDGLSSPPA-ILRPGGVGIDELRTCPGWEDVQTGYKDGALQGKTAPRAPGM 284 Query: 226 LKSHYAPRSQV---------------RLRAIHVNPREA----------------LIRFGN 254 HY+P+++V + I+ P A + Sbjct: 285 KYKHYSPKARVVLFEPGQDTAAVMNRIIADINKQPEWANGSAAIGVIRTKTWKKGLGISQ 344 Query: 255 VPIKNIENAIIS--------------------------LNLSKTGKLKEAAFNLFNYMKI 288 V + N E+ + L+L A LF+ ++ Sbjct: 345 VSLSNGESCETTTSTIGSILDIPIDCDRINASSRRINMLDLHLGQDTSSIARGLFSALRS 404 Query: 289 ADDSGASSIAFSSIPNHG--LGIAINNRLERAA 319 D+ I I + L A+ NRL +AA Sbjct: 405 LDERDVPVIYVEGISDTEGDLAAAVMNRLRKAA 437 >gi|221069970|ref|ZP_03546075.1| Sua5/YciO/YrdC/YwlC family protein [Comamonas testosteroni KF-1] gi|220714993|gb|EED70361.1| Sua5/YciO/YrdC/YwlC family protein [Comamonas testosteroni KF-1] Length = 332 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 101/334 (30%), Positives = 166/334 (49%), Gaps = 21/334 (6%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 I+ T +++ A L G + +PTETVYGLA DS N A+ +++ K RPA +PLI Sbjct: 2 ILDGTLEASVQAAALALQQGRLLGLPTETVYGLAADSDNDAAVAQIFAAKGRPANHPLIV 61 Query: 63 HVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 HV+D + + ++A P+ + L FWPGPLTL+L L ST + R P Sbjct: 62 HVADAAAITRYAKEVPVFAQQLIDAFWPGPLTLILPRLPHA--AKASTGGQDSVGLRCPS 119 Query: 122 GFTK----KLIETYGHPLA---IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174 + + P+ PSAN+ G++S T +H+ + E L++DGG ++ Sbjct: 120 HPVAHAVLQACQQLDPPVWGVSAPSANKFGRVSPTTAEHVATEF--GEALLVLDGGACEV 177 Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAISV-ELEYCVDETSTPQSPGMLKSHYAPR 233 G+ESTIV+ V +LRPG + + ++RA + L TP++ G L +HYAP Sbjct: 178 GIESTIVDCTRGVPV-LLRPGAITRDDIERACGLRPLSKEELTADTPRASGTLLAHYAPN 236 Query: 234 SQVRL-RAIHVNPREALIRFGNVPIKNIENAIISLNLSK------TGKLKEAAFNLFNYM 286 ++VRL A + ++ I +++ ++ + + ++ A LF + Sbjct: 237 AKVRLMDAGQLQSALDILGKDGRNIAIYHRGPLNVTTAQLLLRRMSDEPRDVARELFGML 296 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + DD GA I + P+ + +RL+RAAA Sbjct: 297 RNFDDWGAKLIWIETPPDTADWEGVRDRLQRAAA 330 >gi|294055966|ref|YP_003549624.1| Sua5/YciO/YrdC/YwlC family protein [Coraliomargarita akajimensis DSM 45221] gi|293615299|gb|ADE55454.1| Sua5/YciO/YrdC/YwlC family protein [Coraliomargarita akajimensis DSM 45221] Length = 332 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 109/325 (33%), Positives = 169/325 (52%), Gaps = 13/325 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++ E L AG +A+PTETVYGLA ++ + + R+++E+K RP ++PLI H I Sbjct: 12 EQNIQHCAELLSAGELVAVPTETVYGLAGNALDEDSARKIFEVKGRPFIDPLISHFHSIE 71 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKL 127 H AK FWPG LT+V + ST I + TA L +A RVP +KL Sbjct: 72 AATSHIEWSDSIQRAAKAFWPGALTIVANKQST--IPDIVTAGLPSAAIRVPGHPVFRKL 129 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + PLA PSAN G +S T +H+ ++ + I+D G G+ESTI++++ E Sbjct: 130 LSKIDFPLAAPSANPFGYVSPTKAEHV-ERTLGTRLRAILDAGPCLHGVESTILDLRNES 188 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVD---ETSTPQSPGMLKSHYAPRSQVRLRA---- 240 RILR G + E++ AI + + + S+ +PG+L HY+P + V L A Sbjct: 189 APRILRQGPISSESISDAIGRTVSETTNASRDDSSQAAPGLLSQHYSPHTPVSLYAPNSL 248 Query: 241 -IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF 299 P + + F P ++ + S+ G E A NLF+ ++ D S + Sbjct: 249 SAEQFPADCAVVFNCKPTAAHLHS-NTFWFSQNGDTCEVAHNLFDLIQRLDQQNFSHLHI 307 Query: 300 SSIPNHGLGIAINNRLERAAAPRNQ 324 + P+ G+G A+N+RL+RAAA R+Q Sbjct: 308 ETCPDIGIGKAVNDRLKRAAAKRSQ 332 >gi|21227350|ref|NP_633272.1| SUA5 protein [Methanosarcina mazei Go1] gi|20905707|gb|AAM30944.1| SUA5 protein [Methanosarcina mazei Go1] Length = 364 Score = 285 bits (731), Expect = 5e-75, Method: Composition-based stats. Identities = 109/355 (30%), Positives = 169/355 (47%), Gaps = 37/355 (10%) Query: 2 QIMSITDSN---ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58 +I+ +++ N + +A E + G +A PTETVYGL D NP + +++E K+RP N Sbjct: 12 RILRVSEVNFDVIIDEAAEIIRKGGTVAFPTETVYGLGADGLNPDTVLKIFEAKERPPGN 71 Query: 59 PLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 PL V +KK A + +L L FWPGPLT+VL+ T + +++ NL T Sbjct: 72 PLSLLVHSREDIKKVAKNIPEKALLLMDTFWPGPLTIVLEKKDT--VPEITSGNLPTIGL 129 Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P +LI+ G PLA PSAN SG+ S + H+L + + I +IDGG + IGL Sbjct: 130 RMPDHRIPLELIKRAGTPLAAPSANLSGKPSPSLAIHVL-ADLAGRIDAVIDGGGTAIGL 188 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISV------ELEYCVDETSTPQSPGMLKSHY 230 EST+V++ E V +LR G + I L++ I EY + + G SHY Sbjct: 189 ESTVVDLTVEPPV-VLRIGAVGIGELEKVIGKIRPTYAGAEYGSGKLMPEKQAGQKYSHY 247 Query: 231 APRSQVRLRAIHVNPR-----------------EALIRFGNVPIKNIENAIISLN----L 269 P +QV L + +A + + ++++ L Sbjct: 248 TPNTQVVLVEGKSEEKVSEQIGILLEEHVSKGQKAGLLLSDETAGFFTAEELNVHDCFLL 307 Query: 270 SKTGKLKEAAFNLFNYMKIADDSGASSIAFSS-IPNHGLGIAINNRLERAAAPRN 323 + + AA LF ++ D +G I + GLG A+ NRL AA+ R+ Sbjct: 308 GSRKEPEGAAKRLFEGLRTLDAAGLDVILADGSFSHSGLGAALINRLREAASVRH 362 >gi|330814380|ref|YP_004358619.1| yrdC/Sua5 family protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA [Candidatus Pelagibacter sp. IMCC9063] gi|327487475|gb|AEA81880.1| yrdC/Sua5 family protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA [Candidatus Pelagibacter sp. IMCC9063] Length = 315 Score = 285 bits (731), Expect = 5e-75, Method: Composition-based stats. Identities = 111/324 (34%), Positives = 169/324 (52%), Gaps = 13/324 (4%) Query: 1 MQIMSIT---DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 M+ S + L KA + + +G IAIPTETVYGLA ++ +++++Y +KKRP Sbjct: 1 MKFYSNIYQPNKKNLIKASKLIKSGKVIAIPTETVYGLAGNAYRNDSVKKIYSLKKRPKN 60 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 NPLI H S + + + ++ + LAK F PGPLT +L L + I L Sbjct: 61 NPLIVHFSSVKTMNQEVVINEQLIKLAKKFSPGPLTYILPLKKESKISKLVLNKKHQIAC 120 Query: 118 RVPCGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P T +++ G P+A PSAN S ++S T + K++ I+D + IGL Sbjct: 121 RIPNNKTFLAVLKQSGVPIAAPSANLSNKLSTTRSADV-EKEFGKKLSYILDSKKTSIGL 179 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQV 236 EST+ + ++ILRPG + E + + + ++ + V SPG K HY+P V Sbjct: 180 ESTV--LLLGASLKILRPGAITKEMIFKVLRKKI-HEVKNQGDIISPGQFKKHYSPGIPV 236 Query: 237 RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296 L P AL+ FG IK LSK LKEAA NL+ ++ + G S Sbjct: 237 YLNQKKPKPNGALLVFGKQKIKKD-----IFFLSKRSSLKEAASNLYVLLRKIKELGYKS 291 Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320 I+ ++IPN G+G AIN+R+ RA++ Sbjct: 292 ISITNIPNTGIGKAINDRIRRASS 315 >gi|299529402|ref|ZP_07042840.1| Sua5/YciO/YrdC/YwlC family protein [Comamonas testosteroni S44] gi|298722651|gb|EFI63570.1| Sua5/YciO/YrdC/YwlC family protein [Comamonas testosteroni S44] Length = 332 Score = 285 bits (731), Expect = 5e-75, Method: Composition-based stats. Identities = 102/334 (30%), Positives = 166/334 (49%), Gaps = 21/334 (6%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 I+ T +++ A L G + +PTETVYGLA DS N A+ +++ K RPA +PLI Sbjct: 2 ILDGTLEASVQAAAVALQQGRLLGLPTETVYGLAADSDNDAAVAQIFAAKGRPANHPLIV 61 Query: 63 HVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 HV+D + + ++A P+ + L FWPGPLTL+L L ST + R P Sbjct: 62 HVADAAAITRYAKEVPVFAQQLIDAFWPGPLTLILPRLPHA--AKASTGGQDSVGLRCPS 119 Query: 122 GFTK----KLIETYGHPLA---IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174 + + P+ PSAN+ G++S T +H+ S E L++DGG ++ Sbjct: 120 HPVAHAVLQACQQLDPPVWGVSAPSANKFGRVSPTTAEHVASEF--GEELLVLDGGACEV 177 Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAISV-ELEYCVDETSTPQSPGMLKSHYAPR 233 G+ESTIV+ V +LRPG + + + RA + L TP++ G L +HYAP Sbjct: 178 GIESTIVDCTRGVPV-LLRPGAITRDDIARACGLRPLSKEELTADTPRASGTLLAHYAPN 236 Query: 234 SQVRL-RAIHVNPREALIRFGNVPIKNIENAIISLNLSK------TGKLKEAAFNLFNYM 286 ++VRL A + ++ I + +++ ++ + + ++ A LF + Sbjct: 237 AKVRLMDAGQLQSALGILGKDGRNIAIYHRSPLNVTTAQLLLRRMSDEPRDVARELFGML 296 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + DD GA I + P+ + +RL+RAAA Sbjct: 297 RNFDDWGAKLIWIETPPDTADWEGVRDRLQRAAA 330 >gi|315050250|ref|XP_003174499.1| SUA5 protein [Arthroderma gypseum CBS 118893] gi|311339814|gb|EFQ99016.1| SUA5 protein [Arthroderma gypseum CBS 118893] Length = 441 Score = 285 bits (731), Expect = 5e-75, Method: Composition-based stats. Identities = 102/389 (26%), Positives = 160/389 (41%), Gaps = 81/389 (20%) Query: 10 NALRKACEFLDAGLP-IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 AL +A E + A +A PTETVYGL D+ A++ +Y+ K+RP+ NPLI HVS Sbjct: 47 TALIEAAEAIRASDIPVAFPTETVYGLGADATRSGAVQGIYKAKQRPSDNPLIVHVSSRD 106 Query: 69 MVKKH----------------ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANL 112 +++ + + + L + FWPGPL+++L + P TANL Sbjct: 107 QLERLLVDPKQSNGAIQSITTSPIPKIYEPLMERFWPGPLSIILPNPPHLPLAPEVTANL 166 Query: 113 KTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171 T R+P + LI P+A PSAN S + S T +H+ + + I +I+DGG Sbjct: 167 PTFAARMPSSPLARLLIALSDKPVAAPSANASTKPSPTTAQHVFTD-LQGRIDMILDGGP 225 Query: 172 SKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL------EYCVDETSTPQSPGM 225 +G+EST+V+ ILRPGG+ I+ L+ E + + + P++PGM Sbjct: 226 CGVGIESTVVDGLSSPPA-ILRPGGVGIDELRTCPGWEDVQIGYKDGALQGKTAPRAPGM 284 Query: 226 LKSHYAPRSQVRLRAI-------------------HVNPREALIRFGNVPIKNIENAIIS 266 HY+P+++V L + A I I Sbjct: 285 KYKHYSPKARVILFEAGRDTASVTDRIIADINKGPKLEQAPASIGIVRTKTWKKGLGITR 344 Query: 267 LNLSKTGKLKE----------------------------------AAFNLFNYMKIADDS 292 ++LS + A LF+ ++ D+ Sbjct: 345 VSLSNGASCETKSSLLDIPIECDRINPSSQPTNMLDIYLGEDTSSIARGLFSALRSLDER 404 Query: 293 GASSIAFSSIPNHG--LGIAINNRLERAA 319 S I I + L A+ NRL +AA Sbjct: 405 NVSVIYVEGISDTEGDLAAAVMNRLRKAA 433 >gi|320102680|ref|YP_004178271.1| Sua5/YciO/YrdC/YwlC family protein [Isosphaera pallida ATCC 43644] gi|319749962|gb|ADV61722.1| Sua5/YciO/YrdC/YwlC family protein [Isosphaera pallida ATCC 43644] Length = 349 Score = 285 bits (730), Expect = 6e-75, Method: Composition-based stats. Identities = 100/329 (30%), Positives = 160/329 (48%), Gaps = 17/329 (5%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + L +A + G +A PTETVYGL D+ NP A+ ++ K RP NPLI HV + + Sbjct: 24 PDQLERAAHLIRQGRLVAFPTETVYGLGADATNPQAVASIFRAKGRPLSNPLIVHVREQT 83 Query: 69 MVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + + L+ LA FWPGPLTLVL S ++T R P + Sbjct: 84 DARSLTTTWPELAQALADCFWPGPLTLVLPRSSRVPDVVAGGPAMRTVGLRAPAHPVARA 143 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+E G PLA PSANRS +S T +H+ + + + LI+DGG G+EST++++ Sbjct: 144 LLEACGVPLAAPSANRSEGLSPTRAEHVARAGLKG-VALILDGGPCVQGIESTVLDLSGP 202 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQ--SPGMLKSHYAPRSQVRLRAIHVN 244 + R+LRPG L+ TL++ + E + + + P SPG+ HYAPR+ +R+ N Sbjct: 203 RP-RLLRPGALDPATLRQVVP---ELELPDAAAPLVGSPGLAPRHYAPRAPLRVAVDPAN 258 Query: 245 PREALIRFGNVPIKNI--------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296 R + + + + + ++ ++ A L+ + D +G + Sbjct: 259 WRGGIAEAERLGVIHRVSSQDFQSNHPAHAVRIALPDDPAGFAAGLYAALHDLDQAGVTQ 318 Query: 297 IAFSSIPNHGLGIAINNRLERAAAPRNQS 325 I + P +A+ +RL RA+ P S Sbjct: 319 IVVEAPPATEEWLAVRDRLRRASCPPGGS 347 >gi|302509580|ref|XP_003016750.1| hypothetical protein ARB_05042 [Arthroderma benhamiae CBS 112371] gi|291180320|gb|EFE36105.1| hypothetical protein ARB_05042 [Arthroderma benhamiae CBS 112371] Length = 445 Score = 285 bits (730), Expect = 6e-75, Method: Composition-based stats. Identities = 106/393 (26%), Positives = 168/393 (42%), Gaps = 85/393 (21%) Query: 10 NALRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 AL KA E + + +P+A PTETVYGL D+ A++ +Y+ K+RP+ NPLI HVS + Sbjct: 47 TALLKAAEAIRTSDIPVAFPTETVYGLGADATRSGAVQGIYKAKQRPSDNPLIVHVSSRA 106 Query: 69 MVKKH----------------ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANL 112 +++ +S+ + L + FWPGPL+++L S + P TANL Sbjct: 107 QLERLLVDPKQSNGAIKCHSTSSIPKIYEPLIERFWPGPLSIILSNPSHLPLAPEVTANL 166 Query: 113 KTACFRVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171 T R+P + LI P+A PSAN S + S T +H+ + + I +I+DGG Sbjct: 167 PTFAARMPSSPLARLLIALADRPVAAPSANASTKPSPTTAQHVFTD-LQGRIEMILDGGP 225 Query: 172 SKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL------EYCVDETSTPQSPGM 225 +G+EST+V+ ILRPGG+ I+ L+ E + + + P++PGM Sbjct: 226 CGVGVESTVVDGLSSPPA-ILRPGGVGIDELRTCPGWEDVQIGYKDGALQGKTAPRAPGM 284 Query: 226 LKSHYAPRSQVRLRA---------------IHVNPREA----------------LIRFGN 254 HY+P+++V L I+ P A + Sbjct: 285 KYKHYSPKARVVLFEPGQDTTSVMNRIIADINKQPEWANGSAAIGVVRTKTWKKGLGISQ 344 Query: 255 VPIKNIENAIIS--------------------------LNLSKTGKLKEAAFNLFNYMKI 288 V N E+ + L++ A LF+ ++ Sbjct: 345 VSFSNGESCEATTSAIGSTLDLPIECDLINPSSHRINMLDIHLGQDTSSIARGLFSALRS 404 Query: 289 ADDSGASSIAFSSIPNHG--LGIAINNRLERAA 319 D+ I I + L A+ NRL +AA Sbjct: 405 LDERNVPIIYVEGISDTEGDLAAAVMNRLRKAA 437 >gi|311696999|gb|ADP99872.1| translation factor, SUA5 type [marine bacterium HP15] Length = 329 Score = 285 bits (730), Expect = 7e-75, Method: Composition-based stats. Identities = 96/323 (29%), Positives = 153/323 (47%), Gaps = 14/323 (4%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 + T S L KA L AG +AIPTETVYGLA D+ N A+R+++E K+RP +PLI H Sbjct: 7 LDATQSGDLEKAASLLLAGHLVAIPTETVYGLAADASNDQAVRKVFEAKQRPVGHPLIVH 66 Query: 64 VSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 V+ + + + L + FWPGPLTL+L + + T R+P Sbjct: 67 VASPDRISLWVDQIPDTARRLVQAFWPGPLTLLLP--KKSGVSDFITGGNPGVAVRMPAH 124 Query: 123 FT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 ++ G L PSAN G+IS TN +H+L + + +I ++DGG +G+ESTIV Sbjct: 125 PATLAAMQRLGRDLVAPSANPYGRISPTNAEHVL-AGLSGKIEAVLDGGDCSVGIESTIV 183 Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241 ++ + V I RPG + ++ + + L + ++ PG +K HY P + A Sbjct: 184 DLTGDTPV-IARPGQIAKSDIEACLGIAL--APGKAASQAVPGSVKRHYQPVTPTVGVAT 240 Query: 242 HVNPR------EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 A + G + ++ + S ++ + E A L+ M D + Sbjct: 241 DRFAGLLPEVTPAGEKIGVIWWQSAPGELASESIMLSADPNEYARMLYTAMHAMDKANVD 300 Query: 296 SIAFSSIPNHGLGIAINNRLERA 318 I P +A+++RL RA Sbjct: 301 RIVIELPPRESQWLAVHDRLGRA 323 >gi|326479423|gb|EGE03433.1| SUA5 [Trichophyton equinum CBS 127.97] Length = 445 Score = 285 bits (729), Expect = 8e-75, Method: Composition-based stats. Identities = 103/393 (26%), Positives = 163/393 (41%), Gaps = 85/393 (21%) Query: 10 NALRKACEFLDAGLP-IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 AL +A E + +A PTETVYGL D+ A++ +Y+ K+RP+ NPLI HVS Sbjct: 47 TALLEAAEAIRNSDIPVAFPTETVYGLGADATRSGAVQGIYKAKQRPSDNPLIVHVSSRD 106 Query: 69 MVKKH----------------ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANL 112 +++ + + + L + FWPGPL+++L S + P TANL Sbjct: 107 QLERLLMDPKQSNGPIKCHSTSPIPKIYEPLIERFWPGPLSIILPNPSHRPLAPEVTANL 166 Query: 113 KTACFRVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171 T R+P + LI P+A PSAN S + S T +H+ + + I I+DGG Sbjct: 167 PTFAARMPSSPLARLLIALADRPVAAPSANASTKPSPTTAQHVFTD-LQGRIETILDGGP 225 Query: 172 SKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL------EYCVDETSTPQSPGM 225 +G+EST+V+ ILRPGG+ I+ L+ E + + + P++PGM Sbjct: 226 CGVGVESTVVDGLSSPPA-ILRPGGVGIDELRTCPGWEDVQTGYKDGALQGKTAPRAPGM 284 Query: 226 LKSHYAPRSQV---------------RLRAIHVNPREA----------------LIRFGN 254 HY+P+++V + I+ P A + Sbjct: 285 KYKHYSPKARVVLFEPGQDTAAVMNRIIADINKQPEWANGSAAIGVIRTKTWKKGLGISQ 344 Query: 255 VPIKNIENAIIS--------------------------LNLSKTGKLKEAAFNLFNYMKI 288 V + N E+ + L+L A LF+ ++ Sbjct: 345 VSLSNGESCETTTSTIGSILDIPIDCDRINASSRRINMLDLHLGQDTSSIARGLFSALRS 404 Query: 289 ADDSGASSIAFSSIPNHG--LGIAINNRLERAA 319 D+ I I + L A+ NRL +AA Sbjct: 405 LDERDVPVIYVEGISDTEGDLAAAVMNRLRKAA 437 >gi|228474930|ref|ZP_04059659.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus hominis SK119] gi|228271162|gb|EEK12542.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus hominis SK119] Length = 346 Score = 285 bits (729), Expect = 8e-75, Method: Composition-based stats. Identities = 94/325 (28%), Positives = 151/325 (46%), Gaps = 18/325 (5%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + L + + G IAIPTETVYGL +++N A+ +Y+ K RP+ NPLI H+ S Sbjct: 19 SQLAEIKTIYENGGLIAIPTETVYGLGANAKNEQAVENIYKAKGRPSDNPLIVHIYKQSQ 78 Query: 70 VKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKL 127 + S P L FWPGP++ +L L + T L + R+P + + Sbjct: 79 MDAFVSTIPKEVKKLMNAFWPGPISFILPLKQGY-LCEKVTGGLNSIAVRMPSHPIGRAI 137 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E P+A PSAN SG+ S T +H+ + + +I I++G S+ GLEST+++ + Sbjct: 138 LEYVDLPIAAPSANISGRTSPTTFQHVYND-LNGKIDGIVNGDQSEEGLESTVLDCT-QF 195 Query: 188 KVRILRPGGLEIETLKRAISVE-LEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246 RI RPG + L + ++Y ++ P +PGM HYAP++ V + P Sbjct: 196 PFRIARPGSITQTMLNHVVPHSVIQYDYNQLERPIAPGMKYKHYAPKTPVYMLTEFTQPI 255 Query: 247 EALIRFGNVPI------KNIENAIISLNLSKT-GKLKEAAFNLFNYMKIADDSGASSI-- 297 L G + K + I ++L + +K A NL+ + DD I Sbjct: 256 SELNESGLAFVLPSSMKKYVPKDCIFISLCENQRDVKGANHNLYKILHDIDDD--ERIQK 313 Query: 298 -AFSSIPNHGLGIAINNRLERAAAP 321 + N A+ NR+ +A Sbjct: 314 AFIYTFDNIEGSEAVMNRMMKATGN 338 >gi|148284357|ref|YP_001248447.1| putative translation factor protein [Orientia tsutsugamushi str. Boryong] gi|146739796|emb|CAM79671.1| putative translation factor protein [Orientia tsutsugamushi str. Boryong] Length = 322 Score = 285 bits (729), Expect = 9e-75, Method: Composition-based stats. Identities = 108/314 (34%), Positives = 163/314 (51%), Gaps = 13/314 (4%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A +F++ G + PTETVYG+ D+ N A + +Y+IK RP NPLI HVS+I + Sbjct: 15 AAQFIEQGKLVIFPTETVYGIGADATNDNACQSIYKIKNRPMNNPLIIHVSNIQAAQTIG 74 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133 + L++ LA WPGP++LV+ L + I +TANL T R+P L++ Sbjct: 75 IFNNLAIKLA-TLWPGPISLVVPLNQSAGISRTATANLDTVAIRIPSHKVALMLLQLTQK 133 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 P+A PSAN SG +S T +H I+ G S GLESTI++ ++ ILR Sbjct: 134 PIAAPSANPSGYLSPTTYQHANIHFQNSPDIFILKGAQSTYGLESTIIDTTADRP-TILR 192 Query: 194 PGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFG 253 G + E +K ++PGM+ HY+P +++RL A + P+E + +G Sbjct: 193 HGFITTEIIKTITGQNPIIAEKHNKLLKAPGMMLKHYSPITKIRLNATKLLPKEVGLNYG 252 Query: 254 NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD------SGASSIAFSSIPNHGL 307 N LNLS L AA NL++ + D+ + +IA + IPN G+ Sbjct: 253 ----PNTLTGKYCLNLSPNSNLMNAAANLYHMLHQLDNYAQNPINEVETIAIAQIPNIGI 308 Query: 308 GIAINNRLERAAAP 321 GIAIN++L RA++ Sbjct: 309 GIAINDKLNRASSY 322 >gi|317133627|ref|YP_004092941.1| Sua5/YciO/YrdC/YwlC family protein [Ethanoligenens harbinense YUAN-3] gi|315471606|gb|ADU28210.1| Sua5/YciO/YrdC/YwlC family protein [Ethanoligenens harbinense YUAN-3] Length = 343 Score = 285 bits (729), Expect = 9e-75, Method: Composition-based stats. Identities = 104/311 (33%), Positives = 157/311 (50%), Gaps = 19/311 (6%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLSLHL 83 +AIPTETVYGLA ++ + A+R ++ K RP NPLI HV+ + ++ AS+ + L Sbjct: 31 VAIPTETVYGLAANALDEAAVRAIFAAKGRPQDNPLIVHVAHPDWLPRYAASIPDAARKL 90 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-KLIETYGHPLAIPSANR 142 FWPGPLT+VL ++ + P +A L TA FR P +IE G PLA PSANR Sbjct: 91 VNAFWPGPLTIVLP--ASPQLAPAVSAGLPTAGFRCPSHPVATAVIEAAGVPLAAPSANR 148 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202 SG S T H+L + + I ++D G +G+EST+V + + ILRPGG+ L Sbjct: 149 SGSPSPTAAAHVL-ADLAGRIDAVVDAGPCAVGVESTVVALHGDVP-HILRPGGITPAQL 206 Query: 203 KRAIS-VELEYCV----DETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNV-- 255 K + E++ V D+ + SPGM HYAP++ V + ++ R V Sbjct: 207 KAVLGAAEVDPAVLEGLDDAAKAASPGMKYKHYAPKASVTILKGPLDVFVRYTRAHAVDG 266 Query: 256 ------PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGI 309 + + ++ A LF ++ D+ GA ++ + G+G+ Sbjct: 267 TFALCFDGEETRIGLPCVSYGPARDAAAQARELFGALRALDERGARAVFARAPEETGMGL 326 Query: 310 AINNRLERAAA 320 A+ NRL RAA Sbjct: 327 AVYNRLLRAAG 337 >gi|39958882|ref|XP_364450.1| hypothetical protein MGG_09295 [Magnaporthe oryzae 70-15] gi|145013245|gb|EDJ97886.1| hypothetical protein MGG_09295 [Magnaporthe oryzae 70-15] Length = 461 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 112/395 (28%), Positives = 165/395 (41%), Gaps = 88/395 (22%) Query: 11 ALRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 ALR+A ++L + +P+ PTETVYGL D+ A+R +Y K RP+ NPLI HV D+ M Sbjct: 65 ALRRAADYLGSSDIPVGFPTETVYGLGADATRSAAVRGIYAAKGRPSDNPLIVHVCDLDM 124 Query: 70 VKKHAS--------------------------------------VDPLSLHLAKLFWPGP 91 ++ S + + L L + FWPGP Sbjct: 125 LRALLSPACDSGNGTNSQAVSEEAAEPATTANGMSNSKTSIDDPIPSIYLPLMERFWPGP 184 Query: 92 LTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITN 150 LT++L + + P TA L T R+P LI G PLA PSAN S + S T Sbjct: 185 LTILLPNPQPSRLAPEVTAGLPTFGARMPASPLALTLIRLAGVPLAAPSANASTRPSPTT 244 Query: 151 VKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL 210 H+L + + LI+DGG +G+EST+V+ C+ +LRPGG+ IE L+R E Sbjct: 245 AHHVL-DDLDGRLELILDGGPCGVGVESTVVDGLCDPPA-VLRPGGVAIEDLRRCKGWEG 302 Query: 211 EYCV----------DETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGN------ 254 +++ P++PGM HY+PR++V L R Sbjct: 303 VVRAYKDEAELGKSGKSAAPRAPGMKYKHYSPRAKVVLYEAGFGGGAEGDRVREDLDAGR 362 Query: 255 -----------------------------VPIKNIENAIISLNLSKTGKLKEAAFNLFNY 285 V IE+ L+L K+ A LF+ Sbjct: 363 LVVGEDARRPARLGVVRTRSSGDKAGERSVEEYQIEDGTTVLDLHLGRDPKDVAQGLFSA 422 Query: 286 MKIADDSGASSIAFSSIPN-HGLGIAINNRLERAA 319 ++ D A I + + + A+ NRL +AA Sbjct: 423 LRELDTRTADVICVEGVGDGDDIAAAVMNRLRKAA 457 >gi|319951527|ref|ZP_08025332.1| Sua5/YciO/YrdC/YwlC family protein [Dietzia cinnamea P4] gi|319434824|gb|EFV90139.1| Sua5/YciO/YrdC/YwlC family protein [Dietzia cinnamea P4] Length = 339 Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 102/309 (33%), Positives = 161/309 (52%), Gaps = 16/309 (5%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-L 83 +A PTETVYGL D+ N A+R+++E+K+RP +PLI H++D + + P L Sbjct: 2 VAFPTETVYGLGADAENAEAVRQVFEVKQRPVTHPLIVHLADPGQLGDWVTEIPGPARVL 61 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142 A+ FWPGPLTLVL I P+ T T RVP ++L+ +G +A PSANR Sbjct: 62 AECFWPGPLTLVLPRSP--RIPPVVTGGCDTVAVRVPHHPVARQLLTAFGGAIAAPSANR 119 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202 G +S T+ H+ + + + LI+DG +G+ESTI++V ++ + +LRPG + ++ L Sbjct: 120 FGAVSCTSADHV-ADELGPAVDLILDGRPCPVGIESTIIDVTGDEPI-LLRPGAVGVDDL 177 Query: 203 KRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA------LIRFGNVP 256 RA+ + ++PG SHY+PR++V L EA R G + Sbjct: 178 ARALGRPIHTATSSPGR-RAPGQHPSHYSPRARVILVEESEVVDEARRQQSHGRRIGVLR 236 Query: 257 IKNIENAII---SLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINN 313 + I +L + L + A +L+ ++ D + S G+G+AI + Sbjct: 237 PPATTASTITGNALVIEVPTALGDYARDLYRLLREFDRHDCEVVIASLPTRAGVGLAIAD 296 Query: 314 RLERAAAPR 322 RL RA+APR Sbjct: 297 RLTRASAPR 305 >gi|119776125|ref|YP_928865.1| SUA5/YciO/YrdC family translation initiation protein [Shewanella amazonensis SB2B] gi|119768625|gb|ABM01196.1| translation factor SUA5 [Shewanella amazonensis SB2B] Length = 315 Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 99/318 (31%), Positives = 156/318 (49%), Gaps = 11/318 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++ + A L+ G +A+PTETVYGLA D+ N A+ +++ +K RPA NPLI HV+D S Sbjct: 5 TDQISLAVAALNRGELVAMPTETVYGLAADAGNADAVAKVFALKGRPATNPLIVHVADAS 64 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKK 126 + A V + L FWPGPLTLVL + T + TA T R+P Sbjct: 65 WINDWASDVGQDAEALMAAFWPGPLTLVLP--AKTYVSRAVTAGQNTVALRMPAHPQALA 122 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L++ +G L PSAN+ IS T+ H+ E+ LI++GG ++GLESTIV + Sbjct: 123 LLKDFGRALVAPSANKYMSISPTSSDHVARQFAGDEL-LILEGGNCRVGLESTIVALLPG 181 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246 + R+LRPG + + +++ + + ++ +PG HY+P + Sbjct: 182 DEPRLLRPGMVSVASIEAVLGRPV---AQQSGGVVAPGQHHKHYSPGLPCYRYGAESDVS 238 Query: 247 EALIRFGNVPIKNIENAIISLN--LSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPN 304 L++ ++ NA+ + A L++ + D S+I + P+ Sbjct: 239 H-LLQANDIGWIFCGNAVPVAGKAIELGADPDAYAQGLYDALYQLDHETLSAIYIAEPPH 297 Query: 305 HGLGIAINNRLERAAAPR 322 A+ NRLERAA PR Sbjct: 298 SSEWQAVQNRLERAAKPR 315 >gi|260655498|ref|ZP_05860986.1| Sua5/YciO/YrdC/YwlC protein [Jonquetella anthropi E3_33 E1] gi|260629946|gb|EEX48140.1| Sua5/YciO/YrdC/YwlC protein [Jonquetella anthropi E3_33 E1] Length = 319 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 96/315 (30%), Positives = 142/315 (45%), Gaps = 12/315 (3%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L +A + L G +A PTETVYGL + + A +R+Y K RP+ NPLI H Sbjct: 13 DRAVLNRAVKLLSDGRLVAFPTETVYGLGGNGWDSEAAKRIYAAKGRPSDNPLILHFPSP 72 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKK 126 V+ A V + L FWPGPLTLVL + L T R+P + Sbjct: 73 EAVELSADVSDRAKKLMARFWPGPLTLVLPAKPIVPLA--VRGGLDTVGCRMPSHPTARA 130 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+ PLA PSAN SG+ S T+ + + + + L+ID G +GLEST++++ + Sbjct: 131 LLSACPFPLAAPSANVSGRPSPTDAATV-AQDLNGRVDLVIDSGPCSVGLESTVLDITGD 189 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL-RAIHVNP 245 V +LRPGG+ +E L+ + + + +SPG HYAP V L +A Sbjct: 190 APV-LLRPGGVSLEELESVLG-PVAFPRGALELRRSPGTRYRHYAPAVAVLLWKADEPFD 247 Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305 + F + A L L A F ++ + I Sbjct: 248 WPSQFCFMGQSEPPVRPARQIL----FDDLAAFAHGYFAGLRDLERENLP-IVVQWPDGS 302 Query: 306 GLGIAINNRLERAAA 320 G+G A+ +RL+R+A Sbjct: 303 GIGRALQDRLKRSAG 317 >gi|152981358|ref|YP_001354532.1| hypothetical protein mma_2842 [Janthinobacterium sp. Marseille] gi|151281435|gb|ABR89845.1| Uncharacterized conserved protein, putative translation factor [Janthinobacterium sp. Marseille] Length = 340 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 98/326 (30%), Positives = 157/326 (48%), Gaps = 19/326 (5%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D A+R A L+ G +A PTETVYGL D+ NP A+ +Y K RP+ +P+I H++ Sbjct: 7 DWPAIRDAARRLEQGELVAFPTETVYGLGADAENPAAVANIYAAKGRPSNHPVIVHLAPE 66 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + + A SV P + L +FWPGPLTL+L I + + R P + Sbjct: 67 ADLNYWAQSVSPDAQKLIAVFWPGPLTLILKR--AVHIPDAVSGGQDSIGLRCPSHPVAQ 124 Query: 126 KLIETY---GHPLAIPSANRSGQISITNVKHILSSSICKE---IPLIIDGGISKIGLEST 179 L+ + +A PSAN+ G +S T +H+ + + I+DGG S++G+EST Sbjct: 125 ALLRAFKDGKGGVAAPSANKFGHVSPTTAQHVHNEFGGDAGSLLTCILDGGQSEVGIEST 184 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 IV++ V +LRPG + E + I + + P++ G L+SHYAP + V L Sbjct: 185 IVDMSRGHAV-LLRPGHISAEQIAAVIGY--LPASPDQAAPRASGTLESHYAPLTPVVLV 241 Query: 240 AIH----VNPREALIRFGNVPIKNIENA--IISLNLSKTGKLKEAAFNLFNYMKIADDSG 293 V + L ++ +A +++ ++S A +L+ ++ DD Sbjct: 242 DGEHLLAVLQKLNLRGRRAALMQYAVDAMPLVAASISLPDTPIAYAHDLYAALRAMDDVH 301 Query: 294 ASSIAFSSIPNHGLGIAINNRLERAA 319 A I + P +N+RL RAA Sbjct: 302 ADVIVVQTPPTDVAWSGVNDRLRRAA 327 >gi|317121006|ref|YP_004101009.1| translation factor SUA5 [Thermaerobacter marianensis DSM 12885] gi|315590986|gb|ADU50282.1| translation factor SUA5 [Thermaerobacter marianensis DSM 12885] Length = 386 Score = 283 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 118/355 (33%), Positives = 168/355 (47%), Gaps = 45/355 (12%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D+ A+R A L G +A PTETVYGL D+ N A+ R++ K RPA NPLI HV+ Sbjct: 21 DAAAIRHAGAVLRRGGLVAFPTETVYGLGADALNAQAVVRIFAAKGRPADNPLIVHVTGP 80 Query: 68 SMVKK--HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 M A+ + L FWPGPLTLVL + + A L T R P Sbjct: 81 EMAGPAVVAAWPDAARRLVDRFWPGPLTLVLP--AGPAVPAAVRAGLPTVAVRCPAHPVA 138 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + LI G P+A PSANRSG+ S T + + + + +++D G +G+EST+V+V Sbjct: 139 QALIAAAGTPVAAPSANRSGRPSPTRAGDVW-ADLGPHLDVLLDAGPVPVGVESTVVDVT 197 Query: 185 CEKKVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQVRLR--- 239 R+LRPGGL +E L+RA+ V L ++ S +PGM HYAP + V L Sbjct: 198 TW-PPRLLRPGGLPVEDLERALGVALAPPPRLEAASAAPAPGMKYRHYAPEAPVMLVDEP 256 Query: 240 AIHVNPREALIRFGN---------------------------------VPIKNIENAIIS 266 A V P + G + + +++ Sbjct: 257 AAGVEPVRRWLAAGQRVALVGCREDLEALLDRAGLAAAWPDPWDERAGAGGADDPSPVVA 316 Query: 267 LNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 L+L + E A LF ++ AD +GA+ I ++P GLG A+ NRL +AAA Sbjct: 317 LDLGPRARPDEQARRLFRALRAADAAGATRILALAVPEVGLGRAVMNRLRKAAAG 371 >gi|224824251|ref|ZP_03697359.1| Sua5/YciO/YrdC/YwlC family protein [Lutiella nitroferrum 2002] gi|224603670|gb|EEG09845.1| Sua5/YciO/YrdC/YwlC family protein [Lutiella nitroferrum 2002] Length = 320 Score = 283 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 96/324 (29%), Positives = 155/324 (47%), Gaps = 24/324 (7%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 T + +A L G +A+PTETVYGLA + +P AI +++ K RPA +PLI H+ D Sbjct: 6 THPEHIDRAARLLREGGLVALPTETVYGLAACAEDPQAIAKVFSAKGRPADHPLIVHLPD 65 Query: 67 ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 ++ + + A + ++ LA+ FWPGPLTLVL + PL T T R Sbjct: 66 LAHLTRWACRIPSVAFRLAEAFWPGPLTLVLPAAPA--VSPLITGGQDTIAVRWSAHPLF 123 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + +++ G + PSAN G IS T+ H+L + I ++DGG ++G+ESTI+++ Sbjct: 124 QAVLDQLGSAVVAPSANPFGHISPTSAAHVLKH-MEGRIDAVLDGGDCRVGVESTILDLS 182 Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQV-------- 236 + +ILRPG + L + + P+ PG L SHYAPR Sbjct: 183 G-PEAKILRPGCIGASQLAAYLPLVERPAAP---APRVPGALDSHYAPRLPCHRFEHDER 238 Query: 237 -RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 L + + A I F +P+ + ++ A ++ + A+ SG+ Sbjct: 239 AYLSQGVPSGKCAFIGFRELPMSTHRSYLL------PADPAAYASQIYAVLHQAESSGSE 292 Query: 296 SIAFSSIPNHGLGIAINNRLERAA 319 SI P+ + + +RL RA+ Sbjct: 293 SILIEMPPDTPEWLHVRDRLLRAS 316 >gi|283781887|ref|YP_003372642.1| Sua5/YciO/YrdC/YwlC family protein [Pirellula staleyi DSM 6068] gi|283440340|gb|ADB18782.1| Sua5/YciO/YrdC/YwlC family protein [Pirellula staleyi DSM 6068] Length = 345 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 112/338 (33%), Positives = 163/338 (48%), Gaps = 24/338 (7%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 I + + + L AG +AIPTETVYGLA D+ NP A+R+++ K RPA +PLI H+ Sbjct: 15 PIVSDEIIARGAQLLAAGELVAIPTETVYGLAADATNPMAVRKIFAAKGRPADHPLIVHI 74 Query: 65 SDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 + + + + P + LA FWPGPLT+++ S D + L T R P Sbjct: 75 AYPDEIDRWGTEIPPAAWDLAAAFWPGPLTMIVRRRSNVDS--VVAGGLDTIAVRCPSHP 132 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 ++L+ G +A PSAN+ G +S T H+L+ +PL+IDGG ++GLESTIV+ Sbjct: 133 VAQRLLRELGRGVAAPSANKFGHVSPTTAAHVLAE-FGDTLPLVIDGGACEVGLESTIVD 191 Query: 183 VQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVR----- 237 + + ILRPG + L+ + + + STP S G L SHYAP V Sbjct: 192 L-SQSTPTILRPGAISQTDLELVLGLAIGDP-HANSTPCS-GRLASHYAPNCIVEIVTEE 248 Query: 238 --------LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIA 289 L A G+V A + L KL A L+ ++ A Sbjct: 249 ELTSKLASLDASGRRVGLLATEEGSVRALAALPADRIVWLPSDAKL--YARGLYGALRAA 306 Query: 290 DDSGASSIAFSSIP-NHGLGIAINNRLERAAAPRNQSQ 326 D+ G S P H L AI +RL++AA PR+ + Sbjct: 307 DERGFDHFLVVSPPLGHPLSAAILDRLQKAAGPRDSRR 344 >gi|30248949|ref|NP_841019.1| Sua5/YciO/YrdC/YwlC family protein [Nitrosomonas europaea ATCC 19718] gi|30138566|emb|CAD84857.1| SUA5/yciO/yrdC family:Sua5/YciO/YrdC/YwlC protein family [Nitrosomonas europaea ATCC 19718] Length = 339 Score = 283 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 101/329 (30%), Positives = 166/329 (50%), Gaps = 28/329 (8%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + +A L +G +A PTETVYGL D P AI++++EIK RP+ +PLI H +++S Sbjct: 14 KQITQAVMSLRSGNVVAFPTETVYGLGADISQPQAIQKIFEIKGRPSSHPLIVHFANLSE 73 Query: 70 VKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 ++ A P + LA+ FWPGPLTL+L + I T +T R+P KL Sbjct: 74 LEFWAENIPATAWILAQHFWPGPLTLILT--KSNHIPLSVTGGQETVGLRIPRHPIALKL 131 Query: 128 IETYG--HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +E G LA PSANR G +S T H+ ++ +I +I+DGG ++GLESTIV+ Sbjct: 132 LEQLGSCKALAAPSANRFGFVSPTIADHV-KNAFNDKIEVILDGGPCEVGLESTIVSCI- 189 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245 +K V ILRPGG+ + +++ + ++ V + ++PG L SHYA + + + + Sbjct: 190 DKDVTILRPGGISVLSIENLLQQKV--SVKSQNKIRTPGSLSSHYATATPLEIC---QSS 244 Query: 246 REALIRFGNVPIKNIENAIISLNLS---------------KTGKLKEAAFNLFNYMKIAD 290 R ++ + I A+I ++ +L+ ++ D Sbjct: 245 ESLFSRSFDLLQQGIRTAVIIRSIHLIPMLNSDDKFHYILMPNDPVAFGKDLYATLRKLD 304 Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAA 319 D+ I + P+ +A+ +RL RA+ Sbjct: 305 DANFERILVEAPPDDLEWLAVADRLSRAS 333 >gi|91762257|ref|ZP_01264222.1| Sua5/YciO/YrdC family protein [Candidatus Pelagibacter ubique HTCC1002] gi|91718059|gb|EAS84709.1| Sua5/YciO/YrdC family protein [Candidatus Pelagibacter ubique HTCC1002] Length = 310 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 113/314 (35%), Positives = 168/314 (53%), Gaps = 9/314 (2%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 ++ + ++KA ++LD I +PTETVYGLA ++ +A++++Y +KKRP NPLI H D Sbjct: 3 SNQSNIKKAKKYLDKNYCIGVPTETVYGLAANAYKNSAVKKIYNLKKRPKNNPLIVHYHD 62 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 I +KK ++ + L K F PGP+T VL L + I T N K+ R P K Sbjct: 63 IDSLKKDCLINDNFIKLYKKFSPGPITYVLQLKKNSKISKYVTNNKKSLAVRFPKHTIFK 122 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 L++ +PLA PSAN + ++S N K + K+I I+DGG IG+ESTIVN+ Sbjct: 123 NLLKQLDYPLAAPSANITTKVSAVNAKDV-KEEFGKKIKYILDGGTCAIGIESTIVNLTA 181 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245 K ILR GGL+I +++A+ ++ + +PG + HY+P +R+ Sbjct: 182 --KPTILRLGGLDISKIQKALGFKMNISTNPKKKI-APGQSRLHYSPGIPLRMNVTKPKN 238 Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305 EA I K L+ L EAA L++ ++ + G SIA IPN Sbjct: 239 DEAFIIIKKKKTKPKN----YFYLTSKSNLDEAAKKLYSCLRKIKNEGYKSIAVEKIPNI 294 Query: 306 GLGIAINNRLERAA 319 GLG AIN+RL RA+ Sbjct: 295 GLGKAINDRLRRAS 308 >gi|319943122|ref|ZP_08017405.1| Sua5/YciO/YrdC/YwlC family protein [Lautropia mirabilis ATCC 51599] gi|319743664|gb|EFV96068.1| Sua5/YciO/YrdC/YwlC family protein [Lautropia mirabilis ATCC 51599] Length = 348 Score = 282 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 111/344 (32%), Positives = 165/344 (47%), Gaps = 33/344 (9%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 ++TD+ L +A L AG I +PTETVYGLA ++ + A+ +Y IK RPA +PLI HV Sbjct: 8 TMTDAP-LAEAAAVLQAGGVIGLPTETVYGLAANAADEQAVTSIYRIKGRPADHPLIVHV 66 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 +D ++ A P + LA FWPGPLTLVL + P ++A T RV Sbjct: 67 ADALAAQQWAEWTPAAQRLADAFWPGPLTLVLRRRAGA--PPFASAGQDTIALRVSSHPV 124 Query: 125 KKLIETYGHPL-----AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + + P+ A PSANR G+IS + H+ S + +PL++DGG S++G+EST Sbjct: 125 FQRLMQALAPVGITGLAAPSANRFGRISPSRAAHV-RSGLGSAVPLVLDGGPSEVGVEST 183 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEY----CVDETSTPQSPGMLKSHYAPRSQ 235 IV++ V +LRPGG+ ++ L + + E P+ PG L SHYAP Sbjct: 184 IVDLSRGAPV-LLRPGGISLQALADCLGQPVRAADSQATREADAPRVPGALPSHYAPSVP 242 Query: 236 VRLR----------------AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKE-- 277 +RL + P + G + + E L + E Sbjct: 243 LRLLSAGALAALLQQRATALSAAQTPVIDGLPMGRIAVWRPEPPPEQPGLFWRCQPTEVA 302 Query: 278 -AAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 AA +L++ + D G +I P A+ +RL+RAAA Sbjct: 303 LAARHLYDTLHQLDALGVDAILVEQPPAEPAWRAVQDRLQRAAA 346 >gi|332185534|ref|ZP_08387282.1| SUA5 domain protein [Sphingomonas sp. S17] gi|332014512|gb|EGI56569.1| SUA5 domain protein [Sphingomonas sp. S17] Length = 311 Score = 282 bits (722), Expect = 6e-74, Method: Composition-based stats. Identities = 124/298 (41%), Positives = 163/298 (54%), Gaps = 17/298 (5%) Query: 23 LPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH 82 +A+PTETVYGLA D+ P A+ R+Y K RP+ NPLI HV D++ ++ A D +L Sbjct: 28 GIVAVPTETVYGLAADATEPQAVARIYAAKGRPSFNPLIVHVPDLAAARELAEFDADALA 87 Query: 83 LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPLAIPSAN 141 LA+ FWPGPLTLV L + I L TA L T RVP + L+ G PLA PSAN Sbjct: 88 LAEAFWPGPLTLVRPLRAGAGIASLVTAGLDTVAIRVPRHRAMQALLAASGRPLAAPSAN 147 Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIET 201 SG IS T H+ +S+ +P I+D G ++ GLESTIV + ILRPG + Sbjct: 148 ASGGISPTRAAHV-RASLGPAVP-ILDDGATEAGLESTIVAGRT-----ILRPGPVTGTM 200 Query: 202 LKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIE 261 L + + +E + + +PG L SHYAPR +RL E LI FG V ++ Sbjct: 201 LAKVLG-SVEQGPEAPAIVTAPGQLASHYAPRKPLRLNVTEAAADEWLIGFGAVEGQDT- 258 Query: 262 NAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 LS G EAA LF+ + AD S +A + IP G+G AIN+RL RAA Sbjct: 259 -------LSAIGDPVEAAARLFDALHRADASDPPRLAVAPIPVDGIGEAINDRLRRAA 309 >gi|34498673|ref|NP_902888.1| Sua5 family translation factor [Chromobacterium violaceum ATCC 12472] gi|34104526|gb|AAQ60884.1| probable translation initiation protein, Sua5/YciO/YrdC family [Chromobacterium violaceum ATCC 12472] Length = 321 Score = 282 bits (722), Expect = 6e-74, Method: Composition-based stats. Identities = 101/324 (31%), Positives = 155/324 (47%), Gaps = 13/324 (4%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ +S T L +A L AG +A+PTETVYGLA D+ P A+ ++ K RPA +PL Sbjct: 1 MKSLSPT-PEGLDQAAALLRAGELVAVPTETVYGLAADATQPDAVAAIFRAKNRPADHPL 59 Query: 61 ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I H+ + + + AS V + + + FWPGPLTLVL ++ + + A T R Sbjct: 60 IVHLPGLEQLNEWASRVPDCAWPVIERFWPGPLTLVLP--ASEKVPAIVNAGQDTVALRW 117 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 + L++ P+A PSAN +IS T +H+ +++ I ++DGG +G+ES Sbjct: 118 SSHPLLQALLDRLQRPVAAPSANPFCRISPTTAEHV-RANMEGRIAAVVDGGPCAVGIES 176 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQV-R 237 TI+++ + ILRPG + L + + D P+ PG L SHYAP R Sbjct: 177 TILDLSGARPA-ILRPGAVTAAMLAPYLDLAETAAPD---APRVPGNLASHYAPHQPCYR 232 Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKT--GKLKEAAFNLFNYMKIADDSGAS 295 L A R + + I+ K + A L+ + AD SG Sbjct: 233 LEAAEAEERADDAGWRQAAVLAIDAPAARCGWLKRMPPTPEGYAQALYAALHQADASGCP 292 Query: 296 SIAFSSIPNHGLGIAINNRLERAA 319 S+ P+ A+ +RL+RAA Sbjct: 293 SVWIVLPPDEPAWRAVRDRLQRAA 316 >gi|255993957|ref|ZP_05427092.1| Sua5/YciO/YrdC/YwlC family protein [Eubacterium saphenum ATCC 49989] gi|255993625|gb|EEU03714.1| Sua5/YciO/YrdC/YwlC family protein [Eubacterium saphenum ATCC 49989] Length = 339 Score = 281 bits (721), Expect = 7e-74, Method: Composition-based stats. Identities = 102/333 (30%), Positives = 162/333 (48%), Gaps = 30/333 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + KA + G +A PTETVYGL ++ +P AI ++Y+ K RP+ NPLI H+SDI Sbjct: 9 DKEGMEKAANIIRTGGTVAFPTETVYGLGANALDPDAIEKIYKAKGRPSDNPLIVHISDI 68 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125 S ++ A VD L +A FWPGPLTLV + DI T L T R+P + Sbjct: 69 SELQGVASDVDKHILAIANEFWPGPLTLVC--KKSADIPDQVTGGLDTVAVRMPSSSIAR 126 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 + I + G P+A PSAN+SG+ S T+ H++ + +I +I G S IG+EST+++V Sbjct: 127 EFIRSAGVPIAAPSANKSGKPSPTSTSHVI-DDLNGKIDAVIMGDDSDIGIESTVISVTG 185 Query: 186 EKKVRILRPGGLEIETLKRAI---SVELEYCVDETST---------PQSPGMLKSHYAPR 233 KV +LRPG + ++ + +L D +++ P+SPG+ HY+P Sbjct: 186 -GKVNVLRPGVIGEVEIRGCLEKSGYKLSSGFDGSASDERKSMKDVPKSPGVKYKHYSPN 244 Query: 234 SQVRLRAIH----VNPREALIRFGNVPIKNIENAIISL-NLSKTGKLKEAAFNLFNYMKI 288 + + R ++I + E ++ NLS + + ++ ++ Sbjct: 245 CECFVVVGSAGDMDRMRGSVITQKFSGFFDKETRVLDFMNLSTQDVINKI----YHSLRK 300 Query: 289 ADDSGASS--IAFSSIPNHGLGIAINNRLERAA 319 D+ I A+ NRL +AA Sbjct: 301 LDEDNIKRALIFIKK-DATPEYEALMNRLHKAA 332 >gi|297618444|ref|YP_003703603.1| Sua5/YciO/YrdC/YwlC family protein [Syntrophothermus lipocalidus DSM 12680] gi|297146281|gb|ADI03038.1| Sua5/YciO/YrdC/YwlC family protein [Syntrophothermus lipocalidus DSM 12680] Length = 336 Score = 281 bits (721), Expect = 7e-74, Method: Composition-based stats. Identities = 98/327 (29%), Positives = 161/327 (49%), Gaps = 27/327 (8%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 +++ + +A + G +A PTETVYGL D+ N A+ +++ K R NPLI H+S++ Sbjct: 17 EASVIAEAAALIRKGEVVAFPTETVYGLGADAFNEEAVCKIFIAKGRQPDNPLIVHISNM 76 Query: 68 SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125 S V V + L FWPGPLTLV++ L + + + A T R+P Sbjct: 77 SQVSALIKSVPDEARLLMDRFWPGPLTLVMESLPS--VASAARAGGNTVGVRMPRHPVAL 134 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LI+ G PLA PSAN SG+ S T +H+ + + I I+D G + +G+EST++++ Sbjct: 135 ALIDEAG-PLAAPSANLSGRPSPTTPEHV-KNDLDGRISAILDAGPTGMGIESTVLDMT- 191 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL------- 238 +K RILRPGG+ +E L+ + + ET+ + P HY R++V L Sbjct: 192 QKPFRILRPGGISLEELEEVLPGMV-----ETAEAKGPADRYPHYQTRARVILLSEPADV 246 Query: 239 -----RAIHVNPREALIRFGNVPIKNIE-NAIISLNLSKTGKLKEAAFNLFNYMKIADDS 292 + L+ ++IE + + L + +EA L+ ++ AD Sbjct: 247 ASALHEYKKQGKKVGLVAHSYEEYRHIEKESDLVYWLPPSA--EEAGKRLYAVLRDADQR 304 Query: 293 GASSIAFSSIPNHGLGIAINNRLERAA 319 G + F P G G A+ RL++++ Sbjct: 305 GLDILFFEPYPEEGKGSALMYRLKKSS 331 >gi|169783792|ref|XP_001826358.1| protein SUA5 [Aspergillus oryzae RIB40] gi|238493617|ref|XP_002378045.1| translation initiation protein Sua5 [Aspergillus flavus NRRL3357] gi|83775102|dbj|BAE65225.1| unnamed protein product [Aspergillus oryzae] gi|220696539|gb|EED52881.1| translation initiation protein Sua5 [Aspergillus flavus NRRL3357] Length = 434 Score = 281 bits (721), Expect = 8e-74, Method: Composition-based stats. Identities = 98/377 (25%), Positives = 156/377 (41%), Gaps = 83/377 (22%) Query: 24 PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-------- 75 P+A PTETVYGL D+ A++ +Y+ K+RP+ NPLI H+ + M+++ + Sbjct: 56 PVAFPTETVYGLGADATRSDAVQGIYKAKQRPSDNPLIVHIDSLEMLERLLNPQESGSTS 115 Query: 76 --------VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126 + + L FWPGPLT++L S + + T+ L T R+P + Sbjct: 116 ASDSPRNTIPSVYQSLIARFWPGPLTILLPNPSGSLLAKEVTSKLTTFGARMPSSPLARL 175 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LI PLA PSAN S + S T +H+ + I LI+DGG +G+EST+V+ C+ Sbjct: 176 LIHVADRPLAAPSANASTKPSPTAAEHVY-HDLQGRIELILDGGSCGVGVESTVVDGLCD 234 Query: 187 KKVRILRPGGLEIETLKRAISVEL------EYCVDETSTPQSPGMLKSHYAPRSQVRL-- 238 ILRPGG+ IE ++ E + +D P++PGM HY+P+++V L Sbjct: 235 PPA-ILRPGGIGIEEIRTCAGWENVQLGYHDGTLDVKEIPRAPGMKYRHYSPKARVVLFE 293 Query: 239 ------------RAIHVNPREALIRFGNVPIKNIENAII--------------------- 265 R + G V K+ + + Sbjct: 294 AGSKEQSVTKHIRKDLEDTAIGAHMIGIVRTKHWKRGLGLLSDEEIEKTLKPLPSLIDGL 353 Query: 266 -------------------SLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306 + + ++ A LF ++ D+ I I + Sbjct: 354 AGFSVPITGNPGRSPAFKEAFDCHLGPDVESIARGLFAALRAMDEMEVDVIYVEGISDQQ 413 Query: 307 LG---IAINNRLERAAA 320 G A+ NRL +AA Sbjct: 414 -GDRAAAVMNRLRKAAG 429 >gi|302665561|ref|XP_003024390.1| hypothetical protein TRV_01457 [Trichophyton verrucosum HKI 0517] gi|291188442|gb|EFE43779.1| hypothetical protein TRV_01457 [Trichophyton verrucosum HKI 0517] Length = 445 Score = 281 bits (720), Expect = 9e-74, Method: Composition-based stats. Identities = 104/393 (26%), Positives = 169/393 (43%), Gaps = 85/393 (21%) Query: 10 NALRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 AL +A + + + +P+A PTETVYGL D+ A++ +Y+ K+RP+ NPLI HVS Sbjct: 47 TALLEAAKAIRTSDIPVAFPTETVYGLGADATRSGAVQGIYKAKQRPSDNPLIVHVSSRD 106 Query: 69 MVKKH----------------ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANL 112 +++ + + + L + FWPGPL+++L S + P TANL Sbjct: 107 QLERLLVDPKQSNGAIKCHSTSPIPKIYEPLIERFWPGPLSIILPNPSHLPLAPEVTANL 166 Query: 113 KTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171 T R+P + LI P+A PSAN S + S T +H+ + + I +I+DGG Sbjct: 167 PTFAARMPSSPLARLLIALADRPVAAPSANASTKPSPTTAQHVFTD-LQGRIEMILDGGP 225 Query: 172 SKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL------EYCVDETSTPQSPGM 225 +G+EST+V+ ILRPGG+ I+ L+ E + + + P++PGM Sbjct: 226 CGVGVESTVVDGLSSPPA-ILRPGGVGIDELRTCPGWEDVQIGYKDGALQGKTAPRAPGM 284 Query: 226 LKSHYAPRSQVRLRAIHVNPREALIR-----------------FGNVPIKNIENAIISLN 268 HY+P+++V L NP + R G V K + + + Sbjct: 285 KYKHYSPKARVVLFEPGQNPASVMNRIIADINKQPEWANESAAIGVVRTKTWKKGLGISH 344 Query: 269 LSKTG---------------------KLKEAAFN-------------------LFNYMKI 288 +S + L A+ + LF+ ++ Sbjct: 345 VSLSNGESCEATTPAIGSILDIPIECDLINASSHRINMLDINLGQDTSSIARGLFSALRS 404 Query: 289 ADDSGASSIAFSSIPNHG--LGIAINNRLERAA 319 D+ I I + L A+ NRL +AA Sbjct: 405 LDERNVPVIYVEGISDTEGDLAAAVMNRLRKAA 437 >gi|218673734|ref|ZP_03523403.1| probable translation factor protein [Rhizobium etli GR56] Length = 277 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 128/256 (50%), Positives = 166/256 (64%), Gaps = 2/256 (0%) Query: 21 AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80 G IA+PTETVYGLA D+ NP AI R+YE K RP NPLICH++D++M + HA DP+S Sbjct: 24 DGFAIAMPTETVYGLAADATNPAAITRIYETKGRPRFNPLICHMADLAMAEHHAEFDPVS 83 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSA 140 LA+ FWPGPLTLVL L + + IH L+TA L + RVP GF LI +G PLA PSA Sbjct: 84 RALAEAFWPGPLTLVLPLKAESPIHSLATAGLDSVGVRVPKGFAGALIGAFGRPLAAPSA 143 Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200 N SG IS T+ H+ + + +IPLI+D G S +G+ESTIV V+ + +VR+LRPGGL Sbjct: 144 NTSGAISATSAAHV-EADLGAKIPLILDAGPSTVGVESTIVKVEGD-RVRLLRPGGLAAR 201 Query: 201 TLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNI 260 ++R L ++ ++PGML SHYAP + VRL A V P EALI FG ++ Sbjct: 202 EIERIAGRPLLRAKKASAAIEAPGMLASHYAPGASVRLNASAVEPGEALIAFGGAAVEGA 261 Query: 261 ENAIISLNLSKTGKLK 276 +A I L+LS G L Sbjct: 262 RDARIVLDLSPRGDLA 277 >gi|73668440|ref|YP_304455.1| translation factor SUA5 [Methanosarcina barkeri str. Fusaro] gi|72395602|gb|AAZ69875.1| translation factor SUA5 [Methanosarcina barkeri str. Fusaro] Length = 367 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 105/354 (29%), Positives = 161/354 (45%), Gaps = 40/354 (11%) Query: 3 IMSITDSN---ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 + +++ N L +A + G +A PTETVYGL D NP A+ +++E KKRP NP Sbjct: 13 VFRVSEENFDSVLERASAIIKRGGTVAFPTETVYGLGADGLNPEAVMKIFEAKKRPPGNP 72 Query: 60 LICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 L V V+K A ++ + L FWPGPLT++L+ + +++ LK+ R Sbjct: 73 LSLLVHSREDVEKVARNIPESAFRLMNAFWPGPLTIILE--KNDIVPDITSGRLKSIGVR 130 Query: 119 VPCGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 +P LI+ G PLA PSAN SG+ S + H++S + I I+DGG + IGLE Sbjct: 131 MPDHRVPLDLIKRAGTPLAAPSANLSGKPSPSLAAHVISD-LTGRIDAILDGGEAAIGLE 189 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCVDETS-----TPQSPGMLKSHYA 231 ST++++ E V +LRPG + E L+ I V Y E + + G HY Sbjct: 190 STVIDMTVEPPV-VLRPGAVSFEELESIIGKVRPGYKNGENGDKSDLSEKKAGQKYGHYI 248 Query: 232 PRSQVRLRAIH------------VNPREALIRFGNVPIKNIE------------NAIISL 267 P ++V L + R + G + + + L Sbjct: 249 PDTKVVLVEGEGKSVSGQLVKLLESYRSEGAKVGLLLSEETSKETAPLLALKNLSPDECL 308 Query: 268 NLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSS-IPNHGLGIAINNRLERAAA 320 L + AA LF +++ D G I + GLG A+ NRL A++ Sbjct: 309 LLGPREEPDVAARKLFEGLRMLDKKGLDVIVADGSFSHSGLGEALINRLREASS 362 >gi|86608509|ref|YP_477271.1| Sua5/YciO/YrdC/YwlC family protein [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557051|gb|ABD02008.1| Sua5/YciO/YrdC/YwlC family protein [Synechococcus sp. JA-2-3B'a(2-13)] Length = 363 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 108/361 (29%), Positives = 172/361 (47%), Gaps = 46/361 (12%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +I+S T + + A L G +AIPTETVYGLA + + A+ ++ K+RP +PLI Sbjct: 4 EILSPTPEH-IAVAAAALLRGQLVAIPTETVYGLAGNGLDEQAVANIFAAKERPRFDPLI 62 Query: 62 CHVS---DISMVKKH----ASVDPLSLHL----AKLFWPGPLTLVLDLLSTTDIHPLSTA 110 H+ + ++ ++ P + L FWPGPLTLVL T + L ++ Sbjct: 63 LHLPAGVTLEQLQGWLVDVSAFTPAARALLGSLIDTFWPGPLTLVLPKCPT--VPDLVSS 120 Query: 111 NLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169 L T RVP + L++ PLA PSANR G+IS T+ + + + + IP I+DG Sbjct: 121 GLPTVALRVPAHPVAQALLQAVQTPLAAPSANRFGRISPTSAQAVYAE-LGGRIPYILDG 179 Query: 170 GISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETST------PQSP 223 G +GLEST++ + E +LRPGG+ +E L+ + + + ++ P++P Sbjct: 180 GECAVGLESTVLKLSPEGIPTLLRPGGIPLEALEAHLGLPIRLPPEQAPKDGTTGPPEAP 239 Query: 224 GMLKSHYAPRSQVRL-----------------RAIHVNPREALIRFGNVPIKNI-----E 261 G L SHYAP +RL + ++ F P + Sbjct: 240 GRLSSHYAPSKPLRLLPTPFAQLQPGDWQQVQHLTTGHSHLGILSFATDPQALLNTLSRH 299 Query: 262 NAIISLNLSKTG-KLKEAAFNLFNYMKIADDSGASSIAFSSIP-NHGLGIAINNRLERAA 319 I+ +L G K AA LF ++ D+ A+ + P + GLG A+ +RL RA+ Sbjct: 300 WPGITFSLECLGSDPKAAARALFASLRRLDEGDATLLLAEPPPISTGLGYAMMDRLRRAS 359 Query: 320 A 320 + Sbjct: 360 S 360 >gi|189183849|ref|YP_001937634.1| Sua5/YciO/YrdC family protein [Orientia tsutsugamushi str. Ikeda] gi|189180620|dbj|BAG40400.1| Sua5/YciO/YrdC family protein [Orientia tsutsugamushi str. Ikeda] Length = 322 Score = 280 bits (718), Expect = 1e-73, Method: Composition-based stats. Identities = 108/311 (34%), Positives = 163/311 (52%), Gaps = 13/311 (4%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A +F++ G + PTETVYG+ D+ N A + +Y IK RP NPLI HV++I + Sbjct: 15 AAQFIEQGKLVIFPTETVYGIGADATNDNACQNIYRIKNRPTNNPLIIHVNNIQAAQTIG 74 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGH 133 + L++ LA WPGP++LV+ L + I +TANL T R+P T L++ Sbjct: 75 IFNKLAIKLA-TLWPGPISLVVPLNQSAGISRTATANLDTVAIRIPAHKTALTLLQLTQK 133 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 P+A PSAN SG +S T +H I+ G S GLESTI++ ++ + ILR Sbjct: 134 PIAAPSANPSGYLSPTTYQHANIHFQNSPNTFILKGTQSTYGLESTIIDTTTDRPI-ILR 192 Query: 194 PGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFG 253 G + E +K + ++PGM+ HY+P +++RL A + P+E + +G Sbjct: 193 HGFITTEIIKTITGQNPIISKKHNNFLKAPGMMLKHYSPITKIRLNATKLLPKEVGLNYG 252 Query: 254 NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD------SGASSIAFSSIPNHGL 307 N LNLS L AA NL++ + D+ + +IA + IPN G+ Sbjct: 253 ----PNTLTGKYCLNLSPNSNLMNAAANLYHMLHQLDNYAQNPINEVETIAIAQIPNIGI 308 Query: 308 GIAINNRLERA 318 GIAIN++L RA Sbjct: 309 GIAINDKLNRA 319 >gi|330999106|ref|ZP_08322827.1| Sua5/YciO/YrdC/YwlC family protein [Parasutterella excrementihominis YIT 11859] gi|329575495|gb|EGG57034.1| Sua5/YciO/YrdC/YwlC family protein [Parasutterella excrementihominis YIT 11859] Length = 334 Score = 280 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 104/330 (31%), Positives = 156/330 (47%), Gaps = 21/330 (6%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + L KA + L+AG +AIPTETVYGLA D+ N A++ +Y K RPA +PLI HV+ Sbjct: 3 SDLEKAVKILEAGGLVAIPTETVYGLAADAENEAAVKSIYAAKNRPATHPLIVHVASAEA 62 Query: 70 VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + A + + L + FWPGPLT+VL + T T R P +L Sbjct: 63 LPYWAREIPEDAKKLTEAFWPGPLTIVLKRSAHAK--DFVTGGQDTVALRCPSHPLVHEL 120 Query: 128 IETY----GHPLAIPSANRSGQISITNVKHI---LSSSICKEIPLIIDGGISKIGLESTI 180 ++ + G LA PSAN G+IS T +H+ L + I+DGG +G+ESTI Sbjct: 121 LKRFDAGKGRGLAAPSANTFGKISPTTAQHVRDDLGEKPDGKTDFILDGGECTVGIESTI 180 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 +++ E RILR G + E + + I +E+ ++P+ G +KSHYAP +++ + Sbjct: 181 LDLTGETP-RILREGDVSGEMISKVIGKPVEHGAV-GASPRVSGSMKSHYAPEHVLKIVS 238 Query: 241 IHVNPREA------LIRFGNVPIKNIENAIISLNLSKTG--KLKEAAFNLFNYMKIADDS 292 P E F + + I ++ G KE NL+ ++ D Sbjct: 239 ADDLPGETQFLARHFKTFSLIAPEKIAKRFSTVAEKVRGYKDAKELQVNLYKWLHELDRD 298 Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAAPR 322 G I + +RL RAAA R Sbjct: 299 GGDVIFAVEPELTDSSAGVLDRLTRAAAER 328 >gi|223937828|ref|ZP_03629728.1| Sua5/YciO/YrdC/YwlC family protein [bacterium Ellin514] gi|223893434|gb|EEF59895.1| Sua5/YciO/YrdC/YwlC family protein [bacterium Ellin514] Length = 388 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 114/329 (34%), Positives = 175/329 (53%), Gaps = 23/329 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 A+++A E L AG +A+PTETVYGLA ++ + A+ R++E K RPA NP+I HV+DI Sbjct: 64 QKAVKRAAELLRAGELVALPTETVYGLAANALDAAAVGRIFEAKGRPAHNPIIVHVADIE 123 Query: 69 MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 M + S P+ + LA+ FWPGPLTLVL + I + TA T R P F + Sbjct: 124 MARACVSEWPVQAEKLARAFWPGPLTLVLPRAES--IPDIVTAGGSTVGLRWPSHPFIQA 181 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 +I G PLA PSAN S QIS TN +H+ S + I LI+DGG S++G+EST++++ Sbjct: 182 VIRECGFPLAAPSANPSNQISPTNAEHV-SKGLGTRIKLIVDGGQSQVGIESTVLDISVS 240 Query: 187 KKVRILRPGGLEIETLKRAISVE-----LEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241 R+LRPG + E L+ A+ E + +SPG LK HY+P++++ + + Sbjct: 241 -PARVLRPGMIREEALQAALPAETVLSQTSKKGTKAEIIKSPGQLKKHYSPKARLEILSW 299 Query: 242 HVNPREALIRFGNVPIKNIENAIISLNLSKTG-----------KLKEAAFNLFNYMKIAD 290 P L + I + +I+ + + + A ++ + D Sbjct: 300 ENEPDF-LSQIARRKIAAEKIQVIAHTVIPSAGRFGGVSVIPHDAEAFARAIYAELHRCD 358 Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAA 319 ++GA I ++P AI +RL+RAA Sbjct: 359 EAGAELIIVEALPESSEWQAIADRLKRAA 387 >gi|254296311|ref|ZP_04963768.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 406e] gi|157805879|gb|EDO83049.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 406e] Length = 341 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 98/331 (29%), Positives = 153/331 (46%), Gaps = 24/331 (7%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + A+ A LDAG +A PTETVYGL D++NP A+ R+Y K RPA +P+I H++ S Sbjct: 10 AEAIEDAAARLDAGELVAFPTETVYGLGADAQNPAAVARIYAAKGRPANHPVIVHLAPGS 69 Query: 69 MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 P + L FWPGPLTL+L T I + + R P + Sbjct: 70 DPGYWVEALPADAKKLIDAFWPGPLTLILKR--ATHIPDAVSGGQDSVGLRCPSHPVAQA 127 Query: 127 LIETYG------HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L+ + +A PSANR G +S T +H+ + ++DGG S +G+ESTI Sbjct: 128 LLRAFDARRGGHGGVAAPSANRFGHVSPTTAQHVRDEF--GDAVHVLDGGPSDVGIESTI 185 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQVRLR 239 +++ +LRPG + + + V + + P++ G LK+HYAPR+ + L Sbjct: 186 LDLSRGFPA-LLRPGHVSPRQIADVLGVAPRLPDGSDATAPRASGTLKAHYAPRTPLALA 244 Query: 240 AIH-VNPREALIRFGNVPIK---------NIENAIISLNLSKTGKLKEAAFNLFNYMKIA 289 A + P A R P+ +A ++ A L+ ++ Sbjct: 245 AFERLEPLLAAARDTGEPVALVARASRAGAWAHAAGVHFVAAPEDPAAYARELYGLLRAL 304 Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 D + + I +P+ A+N+RL RAAA Sbjct: 305 DRAQVARILVEKLPDTAEWTAVNDRLGRAAA 335 >gi|303256757|ref|ZP_07342771.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderiales bacterium 1_1_47] gi|302860248|gb|EFL83325.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderiales bacterium 1_1_47] Length = 334 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 104/330 (31%), Positives = 156/330 (47%), Gaps = 21/330 (6%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + L KA + L+AG +AIPTETVYGLA D+ N A++ +Y K RPA +PLI HV+ Sbjct: 3 SDLEKAVKILEAGGLVAIPTETVYGLAADAENEAAVKSIYAAKNRPATHPLIVHVASAKA 62 Query: 70 VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + A + + L + FWPGPLT+VL + T T R P +L Sbjct: 63 LPYWAREIPEDAKKLTEAFWPGPLTIVLKRSAHAK--DFVTGGQDTVALRCPSHPLAHEL 120 Query: 128 IETY----GHPLAIPSANRSGQISITNVKHI---LSSSICKEIPLIIDGGISKIGLESTI 180 ++ + G LA PSAN G+IS T +H+ L + I+DGG +G+ESTI Sbjct: 121 LKRFDAGKGRGLAAPSANTFGKISPTTAQHVRDDLGEKPDGKTDFILDGGECTVGIESTI 180 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 +++ E RILR G + E + + I +E+ ++P+ G +KSHYAP +++ + Sbjct: 181 LDLTGETP-RILREGDVSGEMISKVIGKPVEHGAV-GASPRVSGSMKSHYAPEHVLKIVS 238 Query: 241 IHVNPREA------LIRFGNVPIKNIENAIISLNLSKTG--KLKEAAFNLFNYMKIADDS 292 P E F + + I ++ G KE NL+ ++ D Sbjct: 239 ADDLPGETQFLARHFKTFSLIAPEKIAKRFSTVAEKVRGYKDAKELQVNLYKWLHELDRD 298 Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAAPR 322 G I + +RL RAAA R Sbjct: 299 GGDVIFAVEPELTDSSAGVLDRLTRAAAER 328 >gi|229823148|ref|ZP_04449217.1| hypothetical protein GCWU000282_00445 [Catonella morbi ATCC 51271] gi|229787314|gb|EEP23428.1| hypothetical protein GCWU000282_00445 [Catonella morbi ATCC 51271] Length = 340 Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats. Identities = 96/330 (29%), Positives = 153/330 (46%), Gaps = 24/330 (7%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 L +A L G +A PTETVYGL + A+ ++++ K RP+ NPLI HV D V Sbjct: 10 ELDEAAALLRRGELVAFPTETVYGLGAIATKEQAVAKVFQAKGRPSDNPLIVHVKDAQQV 69 Query: 71 KKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLI 128 + A V L+ L + FWPGPLT++L + T FR+P +LI Sbjct: 70 LDYAAEVPELAKELMERFWPGPLTIILPVKPGV-FPANVNNGQDTVAFRMPNQQSALRLI 128 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII--DGGISKIGLESTIVNVQCE 186 + G PL PSAN SG+ S T+V H++ I ++ D ++IG+EST+V + Sbjct: 129 DLVGTPLVGPSANLSGKPSPTSVDHVM-QDFDGLIAGVVAGDTDQAQIGVESTVVRPMAD 187 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDET-STP--QSPGMLKSHYAPRSQVRLRA--- 240 ++ ILRPG + L + E+ V E + P QSPG+ HY+P+ +V L Sbjct: 188 -RLVILRPGAITQSMLAQVCPNVQEFSVAEQLAAPHLQSPGVKYRHYSPKQEVYLFEATE 246 Query: 241 ---------IHVNPREALIRFGNV--PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIA 289 + + L+ ++ + + + + +L + A L+ ++ Sbjct: 247 DRARLRAKLVAKGGKVGLLADDSIIQALGHQSPVVATYSLGQPHDAVSATRQLYAGLRAL 306 Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAA 319 + SG I + + A NRL +AA Sbjct: 307 EASGCDWILAQATLDSEKYHAYMNRLNKAA 336 >gi|302830981|ref|XP_002947056.1| hypothetical protein VOLCADRAFT_56845 [Volvox carteri f. nagariensis] gi|300267463|gb|EFJ51646.1| hypothetical protein VOLCADRAFT_56845 [Volvox carteri f. nagariensis] Length = 374 Score = 279 bits (714), Expect = 5e-73, Method: Composition-based stats. Identities = 100/324 (30%), Positives = 151/324 (46%), Gaps = 29/324 (8%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA----SVD 77 G +AIPTETVYGLA ++ + A+ R+Y K RPA NPLI HVS + M+ ++ Sbjct: 50 GEVVAIPTETVYGLAANALSACAVGRVYTAKNRPADNPLIVHVSSLDMLASLYPPGWALP 109 Query: 78 PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136 + + + WPGPLT++L + + + T T R+P LI G PLA Sbjct: 110 SVYEAIVRDLWPGPLTILLPR--SHLVPDVVTCGQSTMAVRMPAHPVALALIAACGFPLA 167 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SG+ S T +H+L + +PLI+DGG G+EST+++ ILRPGG Sbjct: 168 APSANSSGRPSPTLARHVL-DDLGGRVPLILDGGACTYGVESTVLD-GLRNPPAILRPGG 225 Query: 197 LEIETLKRAISVE-----LEYCVDE--TSTPQSPGMLKSHYAPRSQVRL----------- 238 + E L +E VD + P +PGM HY+P + V L Sbjct: 226 ITHEQLAGYPGLEGLQLYRRDFVDPQLEAAPSTPGMKYRHYSPNAPVLLLDPGDAPAASV 285 Query: 239 --RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296 A+ ++ L + L + A L+ ++ D+ G + Sbjct: 286 SDEALAARQQDKLEEARQGDLWPQRLPPYEYVLGHVSRPAAVASELYAALRHMDEVGVAV 345 Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320 I + + G G+A+ NRL +AA+ Sbjct: 346 IVVEGVRDTGAGVAVMNRLRKAAS 369 >gi|262277471|ref|ZP_06055264.1| Sua5/YciO/YrdC family protein [alpha proteobacterium HIMB114] gi|262224574|gb|EEY75033.1| Sua5/YciO/YrdC family protein [alpha proteobacterium HIMB114] Length = 321 Score = 278 bits (713), Expect = 7e-73, Method: Composition-based stats. Identities = 115/319 (36%), Positives = 163/319 (51%), Gaps = 12/319 (3%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 I S TD N L+K + L A+PTETVYGLA ++ + A+ ++Y +KKRP NPLI Sbjct: 14 IFSPTDKN-LKKCSKILKNHGIAALPTETVYGLAGNAYSNRAVTKIYSLKKRPKKNPLIV 72 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 H + + K +P L + F PGP+T VL L + I T RVP Sbjct: 73 HFDCLQSILKETEQNPYLQKLYRKFSPGPITYVLKLKKKSKISKKLINKNGTIACRVPAN 132 Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 +K+I PLA PSAN S +S T+ K + K+I I+DG SK+G+EST+V Sbjct: 133 AHFRKIIRLAHTPLAAPSANISNHVSPTSSKDVF-DEFGKKIKFILDGKRSKVGIESTVV 191 Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241 N+ + ++LRPG + +++ I + E SPG LK HY+P V L Sbjct: 192 NLV--GRPKVLRPGKITKYEIQKVIKHVTKNISKE---ILSPGQLKKHYSPGIPVFLNQQ 246 Query: 242 HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSS 301 P AL+ FG +K LSK+ L E A L+ ++ +I + Sbjct: 247 KPKPYGALLVFGKTKLKGKN----IFYLSKSKSLDECAKKLYLKLRQIKKLKYKTITVTK 302 Query: 302 IPNHGLGIAINNRLERAAA 320 IPN G+GIAINNRL+RA++ Sbjct: 303 IPNQGIGIAINNRLKRASS 321 >gi|91790454|ref|YP_551406.1| translation factor SUA5 [Polaromonas sp. JS666] gi|91699679|gb|ABE46508.1| translation factor SUA5 [Polaromonas sp. JS666] Length = 331 Score = 278 bits (712), Expect = 8e-73, Method: Composition-based stats. Identities = 98/334 (29%), Positives = 148/334 (44%), Gaps = 21/334 (6%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 I+ TD A+ +A + AG + PTETVYGL D+ + A+ ++ K RPA +PLI Sbjct: 2 ILPGTDPQAIHEAARRIQAGGLVGFPTETVYGLGADASSDQAVAGIFSAKGRPANHPLIV 61 Query: 63 HVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 HV+D V +A SV P + L + FWPGPLT++L R P Sbjct: 62 HVADAQQVADYASSVPPFAARLMQAFWPGPLTVILPRREGVAAAAAGGQGS--IGLRCPA 119 Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 + +A PSANR G++S T +H+ + L++DGG ++G+ES+I Sbjct: 120 HPVALAFLRACATGVAGPSANRFGRVSPTTAQHVQQEF--GDSLLVLDGGPCEVGIESSI 177 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVEL-------EYCVDETSTPQSPGMLKSHYAPR 233 V+ + V +LRPG L L+ A + P++ G L++HYAP Sbjct: 178 VDCTRGRPV-LLRPGVLTRAQLEAACGEPVLDKDELAREAAGLGDAPRASGTLEAHYAPH 236 Query: 234 SQVRL-RAIHVNPREALIRFGNVPIKNIENAII------SLNLSKTGKLKEAAFNLFNYM 286 ++VRL A + L+ I +I+ L A LF + Sbjct: 237 AKVRLMDAGAIQTALDLLGADAAHIAIYARSIVRIKSDQVLYRRMPDDAAATAQQLFAVL 296 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + D G I +P + +RL RAAA Sbjct: 297 RDFDAQGVKLIWIEHLPATAAWDGVRDRLARAAA 330 >gi|264680710|ref|YP_003280620.1| Sua5/YciO/YrdC/YwlC family protein [Comamonas testosteroni CNB-2] gi|262211226|gb|ACY35324.1| Sua5/YciO/YrdC/YwlC family protein [Comamonas testosteroni CNB-2] Length = 332 Score = 278 bits (712), Expect = 9e-73, Method: Composition-based stats. Identities = 102/334 (30%), Positives = 166/334 (49%), Gaps = 21/334 (6%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 I+ T +++ A L G + +PTETVYGLA DS N A+ +++ K RPA +PLI Sbjct: 2 ILDGTLEVSVQAAAAALQQGRLLGLPTETVYGLAADSDNDAAVAQIFAAKGRPANHPLIV 61 Query: 63 HVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 HV+D + + ++A P+ + L FWPGPLTL+L L ST + R P Sbjct: 62 HVADATAITRYAKEVPVFAQQLIDAFWPGPLTLILPRLPHA--AKASTGGQDSVGLRCPS 119 Query: 122 GFTK----KLIETYGHPLA---IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174 K + P+ PSAN+ G++S T +H+ + E L++DGG ++ Sbjct: 120 HPVAHAVLKACQQLDPPVWGVSAPSANKFGRVSPTTAEHVATEF--GEELLVLDGGACEV 177 Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAISV-ELEYCVDETSTPQSPGMLKSHYAPR 233 G+ESTIV+ V +LRPG + + + RA + L TP++ G L +HYAP Sbjct: 178 GIESTIVDCTRGVPV-LLRPGAVTRDDIARACGLRPLSKEELTADTPRASGTLLAHYAPN 236 Query: 234 SQVRL-RAIHVNPREALIRFGNVPIKNIENAIISLNLSK------TGKLKEAAFNLFNYM 286 ++VRL A + ++ I + +++ ++ + + ++ A LF + Sbjct: 237 AKVRLMDAGQLQSALDILGKDGRNIAIYHRSPLNVTTAQLLLRRMSDEPRDVARELFGML 296 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + DD GA I + P+ + +RL+RAAA Sbjct: 297 RNFDDWGAKLIWIETPPDTADWEGVRDRLQRAAA 330 >gi|71083313|ref|YP_266032.1| Sua5/YciO/YrdC family protein [Candidatus Pelagibacter ubique HTCC1062] gi|71062426|gb|AAZ21429.1| Sua5/YciO/YrdC family protein [Candidatus Pelagibacter ubique HTCC1062] Length = 310 Score = 278 bits (712), Expect = 9e-73, Method: Composition-based stats. Identities = 111/314 (35%), Positives = 166/314 (52%), Gaps = 9/314 (2%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 ++ + ++KA ++LD I +PTETVYGLA ++ +A++++Y +KKRP NPLI H D Sbjct: 3 SNQSNIKKAKKYLDKNYCIGVPTETVYGLAANAYKNSAVKKIYNLKKRPKNNPLIVHYHD 62 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 I +KK ++ + L K F PGP+T VL L + I T N K+ R P K Sbjct: 63 IDSLKKDCLINDNFIKLYKKFSPGPITYVLQLKKNSKISKYVTNNKKSLAVRFPKHTIFK 122 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 L++ +PLA PSAN + ++S K + +I I+DGG IG+ESTIVN+ Sbjct: 123 NLLKQLDYPLAAPSANITTKVSAVKAKDV-KEEFGNKIKYILDGGTCAIGIESTIVNLTA 181 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245 K ILR GGL+I +++A+ ++ + +PG + HY+P +R+ Sbjct: 182 --KPTILRLGGLDISKIQKALGFKMNISTNPKKKI-APGQSRLHYSPGIPLRMNVTKPKN 238 Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305 EA I K L+ L EAA NL++ ++ + G SIA IPN Sbjct: 239 NEAFILIKKKKTKLKS----YFYLTSKSNLDEAAKNLYSCLRKIKNKGYKSIAVEKIPNI 294 Query: 306 GLGIAINNRLERAA 319 GLG IN+RL RA+ Sbjct: 295 GLGKTINDRLRRAS 308 >gi|119953512|ref|YP_945721.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia turicatae 91E135] gi|119862283|gb|AAX18051.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia turicatae 91E135] Length = 336 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 104/334 (31%), Positives = 162/334 (48%), Gaps = 19/334 (5%) Query: 1 MQIMS--ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58 M +M I + ++KA + + AG + PTETVYG+ ++ N AIR ++ +K+RP N Sbjct: 1 MTLMKTEIIEQLEIKKAAKLIRAGELVVFPTETVYGIGANAYNDDAIRMIFLVKRRPITN 60 Query: 59 PLICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 PLI HV I +K+ P +L L + F PGPLT +L I + L + Sbjct: 61 PLIVHVESIEKIKELVEYIPKSALILMQKFTPGPLTFILKNAGK--ISNFISGGLDSIAV 118 Query: 118 RVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII-DGGISKIG 175 R+P KLI+ G P+A PSAN S + S TN + + + + II SKIG Sbjct: 119 RIPSEPVALKLIKMSGVPIAAPSANLSRRPSATNFEMAIRE-LDGLVKGIIKKNEESKIG 177 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPR 233 +EST++ + + ILRPG + E +++ + + +EY V + +SPG L HY PR Sbjct: 178 IESTVIGFDSKGNISILRPGSITKEMIEKELKGKFRVEYSVGKEMLSKSPGNLLEHYKPR 237 Query: 234 SQVRLRAIHVNPRE--------ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNY 285 V L N R+ LI + + N+ L+E A N++ Sbjct: 238 IPVYLFKQKDNIRQYASRQDTKVLIMKATLNSYWFNKSWNMNNICVFNTLEEYAKNIYKV 297 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 ++ + I + N LG +INNRL++A+ Sbjct: 298 FVESEKT-YKQILAEFVDNSQLGYSINNRLKKAS 330 >gi|167579982|ref|ZP_02372856.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia thailandensis TXDOH] Length = 341 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 97/335 (28%), Positives = 155/335 (46%), Gaps = 24/335 (7%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 I + +A LDAG +A PTETVYGL D++NP A+ R+Y K RPA +P+I H+ Sbjct: 6 PIPTDEQIDEAAALLDAGELVAFPTETVYGLGGDAQNPAAVARIYAAKGRPANHPVIVHL 65 Query: 65 SDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 + S + + L FWPGPLTL+L + I + + R P Sbjct: 66 APGSDPGYWVDSLPADAQKLIDAFWPGPLTLILKRAA--RIPDAVSGGQDSVGLRCPSHP 123 Query: 123 FTKKLIETYG------HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 + L+ + +A PSANR G +S T +H+ + ++DGG S +G+ Sbjct: 124 VAQALLRAFDARRGGHGGVAAPSANRFGHVSPTTAQHVRDEF--GDAVHVLDGGPSDVGI 181 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQ 235 ESTI+++ +LRPG + + + V + + P++ G LK+HYAPR+ Sbjct: 182 ESTILDLSRGFPA-LLRPGDVSPRQIADVLGVAPRLPDGSDATAPRASGTLKAHYAPRTP 240 Query: 236 VRLRAIH-VNPREALIRFGNVPIK---------NIENAIISLNLSKTGKLKEAAFNLFNY 285 + L A + P A R P+ +A ++ + A L+ Sbjct: 241 LALAAFERLEPLLAAARDAGEPVALVARVSRAGAWAHAQGVHFVAAPEDPRVYARELYGL 300 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ D + + I +P+ IA+N+RL RAAA Sbjct: 301 LRALDRAQVARILVEKLPDTVEWIAVNDRLGRAAA 335 >gi|159035694|ref|YP_001534947.1| Sua5/YciO/YrdC/YwlC family protein [Salinispora arenicola CNS-205] gi|157914529|gb|ABV95956.1| Sua5/YciO/YrdC/YwlC family protein [Salinispora arenicola CNS-205] Length = 317 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 114/319 (35%), Positives = 181/319 (56%), Gaps = 9/319 (2%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 ++ + + +A L AG +A PTETVYGL ++ + A+ R++ K RP+ +PLI H++ Sbjct: 1 MSADSGVAEAAAVLRAGGLVAFPTETVYGLGANALDAQAVARIFAAKARPSFDPLITHLA 60 Query: 66 DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 + + ++K +V P LA+ FWPGPLTL++D + I P+ T+ L+T RVP Sbjct: 61 EAAELEKLVGTVSPAVAVLAERFWPGPLTLIVDRPAA--IPPIVTSGLETMAVRVPDHAA 118 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + LI G P+A PSANR GQ+S T +H++ + + + +++DGG ++ G+ESTIV+V Sbjct: 119 ARGLIAAAGVPVAAPSANRFGQLSPTWAEHVV-AGLGAAVDVVLDGGPTRCGIESTIVDV 177 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 + E+ V +LR G L +E+L+ A+ + + P +PG L +HYAPR+ +RL Sbjct: 178 RGERPV-VLRLGALPVESLEEAVG-PVTVRPGSSGQPVAPGTLAAHYAPRTPLRLVTGAG 235 Query: 244 NPREALIRFGNVPIKNIENA--IISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSS 301 R G + ++ LS G L EAA LF+ + D +G I Sbjct: 236 PMDGGGARRGFLGFRSRPAGEWAAVEVLSSDGDLTEAAARLFDALHRLDGAGVDEIVVEP 295 Query: 302 IPNHGLGIAINNRLERAAA 320 +P G+G A+N+RL RAAA Sbjct: 296 VPEVGVGRAVNDRLRRAAA 314 >gi|207728037|ref|YP_002256431.1| translation factor, sua5 type protein [Ralstonia solanacearum MolK2] gi|206591281|emb|CAQ56893.1| translation factor, sua5 type protein [Ralstonia solanacearum MolK2] Length = 336 Score = 277 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 98/321 (30%), Positives = 158/321 (49%), Gaps = 18/321 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +A L+AG +A PTETVYGL D+ NP AI R+Y +K RP+ +P+I HV D + + Sbjct: 16 LDEAVRRLEAGELVAFPTETVYGLGADAENPQAIARIYALKGRPSNHPVIVHVVDGADLT 75 Query: 72 KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI-- 128 A P +++ L + FWPGPLTL+L I + R P + + Sbjct: 76 YWADDLPGIAVQLVEAFWPGPLTLILKRAPH--IPAAVAGGQDSIGLRCPSHPVAQALLS 133 Query: 129 --ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 + +A PSAN+ GQ+S T +H+ E +++G + +G+ESTIV++ Sbjct: 134 RFKRGRGGIAAPSANKFGQVSPTTAQHVRDEF--GEAIFVLEGDGADVGIESTIVDLSRL 191 Query: 187 KK---VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVR-LRAIH 242 + +LRPG + E ++R V L + + + P++ G L++HYAPR+ + L A Sbjct: 192 DQGIGPVLLRPGAITPEDIERVTGVTL--SLPDAAAPRASGTLRAHYAPRTPLYLLAATD 249 Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFN---LFNYMKIADDSGASSIAF 299 V R A + G + + + A L+ ++ D G +I Sbjct: 250 VPARLAALPAGQRIVWVGAPVDLPPGCDQRAAPATPAAYANTLYALLRELDRGGYHAIWV 309 Query: 300 SSIPNHGLGIAINNRLERAAA 320 ++P+ A+N+RL RAAA Sbjct: 310 ETLPDTSAWAAVNDRLRRAAA 330 >gi|73662077|ref|YP_300858.1| translation factor [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72494592|dbj|BAE17913.1| putative translation factor [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 347 Score = 277 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 87/325 (26%), Positives = 142/325 (43%), Gaps = 19/325 (5%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 N L + G IAIPTETVYGL D+RN AI+ +Y K RP+ NPLI H+ + Sbjct: 18 DNELNDIKVIFENGGLIAIPTETVYGLGADARNEAAIKHIYSAKGRPSDNPLIVHIYKVE 77 Query: 69 MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KK 126 ++ + L FWPGP++ ++ L + + L + R+P ++ Sbjct: 78 QIQAFTDKLSKEVEMLMNEFWPGPISFIVPLKKGY-LCESVSGGLDSIAVRMPSHPIGRQ 136 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 +++ P+A PSAN SG+ S T +H+ + I I++G S+ GLEST+++ Sbjct: 137 ILKYVDMPIAAPSANLSGRPSPTTFEHVYRD-LDGRIDGIVNGDQSEEGLESTVLDCT-R 194 Query: 187 KKVRILRPGGLEIETLKRAISVEL-EYCVDETSTPQSPGMLKSHYAPRSQVRLRA----- 240 +I RPG + ++ I + ++ P +PGM HY+P + V++ Sbjct: 195 FPFKIARPGSITKSMIEAVIPDSVTTIGTLDSEKPIAPGMKYKHYSPDTPVKILKSFNAL 254 Query: 241 --IHVNPREALIRFGNVPIKNIENAIISLNLSKT-GKLKEAAFNLFNYMKIADDSGASSI 297 N + I A + L + +K A NL+ + D I Sbjct: 255 PTSTSNWTQTAFIVPRSKQALIPEAAKFIPLCEDENDIKGANHNLYQILHQLDQD--DQI 312 Query: 298 ---AFSSIPNHGLGIAINNRLERAA 319 + AI NR+ +AA Sbjct: 313 QHAFIYGFDLNDNTTAIMNRMMKAA 337 >gi|83746071|ref|ZP_00943126.1| SUA5 protein [Ralstonia solanacearum UW551] gi|207742433|ref|YP_002258825.1| translation factor, sua5 type protein [Ralstonia solanacearum IPO1609] gi|83727254|gb|EAP74377.1| SUA5 protein [Ralstonia solanacearum UW551] gi|206593823|emb|CAQ60750.1| translation factor, sua5 type protein [Ralstonia solanacearum IPO1609] Length = 336 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 98/321 (30%), Positives = 158/321 (49%), Gaps = 18/321 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +A L+AG +A PTETVYGL D+ NP AI R+Y +K RP+ +P+I HV D + + Sbjct: 16 LDEAARRLEAGELVAFPTETVYGLGADAENPQAIARIYALKGRPSNHPVIVHVVDGADLT 75 Query: 72 KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI-- 128 A P +++ L + FWPGPLTL+L I + R P + + Sbjct: 76 YWADDLPGIAVQLVEAFWPGPLTLILKRAPH--IPAAVAGGQDSIGLRCPSHPVAQALLS 133 Query: 129 --ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 + +A PSAN+ GQ+S T +H+ E +++G + +G+ESTIV++ Sbjct: 134 RFKRGRGGIAAPSANKFGQVSPTTAQHVRDEF--GEAIFVLEGDGADVGIESTIVDLSRL 191 Query: 187 KK---VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 + +LRPG + E ++R V L + + + P++ G L++HYAPR+ + L A Sbjct: 192 DQGIGPVLLRPGAITPEDIERVTGVTL--SLPDAAAPRASGTLRAHYAPRTPLYLLAAAD 249 Query: 244 NP-REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFN---LFNYMKIADDSGASSIAF 299 P R A + G + + + A L+ ++ D G +I Sbjct: 250 VPARLAALPAGQRIVWVGAPVDLPPGCDQRAAPATPAAYANTLYALLRELDRGGYHAIWV 309 Query: 300 SSIPNHGLGIAINNRLERAAA 320 ++P+ A+N+RL RAAA Sbjct: 310 ETLPDTSAWAAVNDRLRRAAA 330 >gi|282892124|ref|ZP_06300599.1| hypothetical protein pah_c207o060 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281498019|gb|EFB40363.1| hypothetical protein pah_c207o060 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 314 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 108/312 (34%), Positives = 159/312 (50%), Gaps = 12/312 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L KACE L G +A+PTETVYGLA R+P AI ++ +K RPA NPLI HVS + Sbjct: 5 LEKACELLSQGEVVALPTETVYGLAASLRHPNAIENIFALKNRPANNPLIIHVSHYEQIY 64 Query: 72 KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130 +A S+ P + LA+ FWPGPLTLVL + T I A+L TA FR+P + + Sbjct: 65 PYAQSIPPYFVKLAQHFWPGPLTLVLPIQPAT-IPNTVRADLTTAAFRIPQHPLSQAVIK 123 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 P+ +PSAN SG+ S T + P ++DGG GLESTI+ + + Sbjct: 124 QVGPVVMPSANLSGRPSATQASRV-EEDFGTAFP-VLDGGGCTCGLESTILYFI-DNQWE 180 Query: 191 ILRPGGLEIETLKRAISV-ELEYCVDETSTPQSPGMLKSHYAPRSQVRL-RAIHVNPREA 248 I+R G L E + + + + P PG L HYAP++++ L Sbjct: 181 IVRLGSLAPEQFQPILGYQPVIRQETNQAKPLCPGQLYRHYAPQAKLLLDNKASPESIGY 240 Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSS-IPNHGL 307 ++ F + N + +L K+ ++ A NL++ ++ DD+ I S P GL Sbjct: 241 VLGFSDRQYPNCK----IFSLGKSDNPEQVAENLYDTLRSLDDAKIQCIWVDSDFPQKGL 296 Query: 308 GIAINNRLERAA 319 + I+ RL+RA+ Sbjct: 297 WLTISERLKRAS 308 >gi|320107104|ref|YP_004182694.1| Sua5/YciO/YrdC/YwlC family protein [Terriglobus saanensis SP1PR4] gi|319925625|gb|ADV82700.1| Sua5/YciO/YrdC/YwlC family protein [Terriglobus saanensis SP1PR4] Length = 340 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 93/329 (28%), Positives = 148/329 (44%), Gaps = 24/329 (7%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 L +A L G +A PTETVYGL ++ + A+ +++ K+RP +PLI H+S + + Sbjct: 14 EDLDRAATILREGGTVAFPTETVYGLGANALDAAAVEKIFAAKQRPHWDPLIVHLSSLEI 73 Query: 70 VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127 + S+ + L + FWPGPLTL+L + TA + R+P L Sbjct: 74 LSAIVSSISARARLLMEAFWPGPLTLLLARNPALPLA--VTAGRELVGVRMPAHPMALDL 131 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I G P+A PSAN G +S T+ H+L + I I+DGG + +G+EST+++ Sbjct: 132 IRRAGVPVAAPSANLFGHVSPTSAAHVL-EDLDGAIDAIVDGGSTSVGVESTVLD-PNTS 189 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDET------STPQSPGMLKSHYAPRSQVRLRAI 241 + + RPG + +E + + Y +T + SPG+ HYAPR++V L Sbjct: 190 PMMLYRPGAITLEQIVAVAGPTVRYQPVDTLDGAKHESLPSPGIGIRHYAPRARVVLVQD 249 Query: 242 HVNPREALIRFGNVPI--------KNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293 + + K +I ++ A LF ++ D G Sbjct: 250 EDELHRIFQQMKTERVGVLLPTEWKIPSQSIEAVIWGSWNDTTALAHTLFEGLRTLDTRG 309 Query: 294 ASSIAFSSIPNHGLG---IAINNRLERAA 319 I +P G G AI +RL +AA Sbjct: 310 VEIILC-PLPREGSGPLAEAIRDRLMKAA 337 >gi|83719082|ref|YP_441225.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia thailandensis E264] gi|167618052|ref|ZP_02386683.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia thailandensis Bt4] gi|257140109|ref|ZP_05588371.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia thailandensis E264] gi|83652907|gb|ABC36970.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia thailandensis E264] Length = 341 Score = 276 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 97/335 (28%), Positives = 155/335 (46%), Gaps = 24/335 (7%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 I + +A LDAG +A PTETVYGL D++NP A+ R+Y K RPA +P+I H+ Sbjct: 6 PIPTDEQIDEAAALLDAGELVAFPTETVYGLGGDAQNPAAVARIYAAKGRPANHPVIVHL 65 Query: 65 SDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 + S + + L FWPGPLTL+L + I + + R P Sbjct: 66 APGSDPGYWVDSLPADAQKLIDAFWPGPLTLILKRAA--RIPDAVSGGQDSVGLRCPSHP 123 Query: 123 FTKKLIETYG------HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 + L+ + +A PSANR G +S T +H+ + ++DGG S +G+ Sbjct: 124 VAQALLRAFDARRGGHGGVAAPSANRFGHVSPTTAQHVRDEF--GDAVRVLDGGPSDVGI 181 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQ 235 ESTI+++ +LRPG + + + V + + P++ G LK+HYAPR+ Sbjct: 182 ESTILDLSRGFPA-LLRPGDVSPRQIADVLGVAPRLPDGSDATAPRASGTLKAHYAPRTP 240 Query: 236 VRLRAIH-VNPREALIRFGNVPIK---------NIENAIISLNLSKTGKLKEAAFNLFNY 285 + L A + P A R P+ +A ++ + A L+ Sbjct: 241 LALAAFERLEPLLAAARDAGKPVALVARVSRAGAWAHAQGVHFVAAPEDPRVYARELYGL 300 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ D + + I +P+ IA+N+RL RAAA Sbjct: 301 LRALDRAQVARILVEKLPDTVEWIAVNDRLGRAAA 335 >gi|258517250|ref|YP_003193472.1| Sua5/YciO/YrdC/YwlC family protein [Desulfotomaculum acetoxidans DSM 771] gi|257780955|gb|ACV64849.1| Sua5/YciO/YrdC/YwlC family protein [Desulfotomaculum acetoxidans DSM 771] Length = 343 Score = 276 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 101/320 (31%), Positives = 140/320 (43%), Gaps = 30/320 (9%) Query: 20 DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP- 78 G +A PTETVYGL ++ + A+RRL++ K RPA NPL HV+D+ + P Sbjct: 29 KTGGLVAFPTETVYGLGANALDSRAVRRLFQAKARPADNPLTLHVADLKTAFAYLKDIPQ 88 Query: 79 LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAI 137 + LA FWPGPLTLVL + T R+P LIE G PL Sbjct: 89 EAHALAGQFWPGPLTLVLPFQGH--LPAEVTGGRPALGVRMPDHPVALALIEQSGVPLVA 146 Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197 PSAN SG+ S T H+L + I ++DGG S+ GLEST+++ EK V +LRPG L Sbjct: 147 PSANLSGRPSPTTADHVL-QDLSGRIEAVLDGGPSEWGLESTVIDFTGEKPV-LLRPGVL 204 Query: 198 EIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPI 257 E L+ + + P + +HY P + L + R L + G + + Sbjct: 205 TQEDLRPFTG---SLELTNKAIPSA---KYAHYTPHAAFLLVEGEDD-RVVLEKIGQMAL 257 Query: 258 KNIENA-----------------IISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300 + I + A LF M+ D+ I + Sbjct: 258 HYEKQGQKVGLLLYEEDAFLFQSYIYTTAGSKSRPVSVAAGLFQAMRELDNRCVDIIICA 317 Query: 301 SIPNHGLGIAINNRLERAAA 320 GLG+AI NRL AA Sbjct: 318 GFHGQGLGLAIQNRLRLAAG 337 >gi|254456156|ref|ZP_05069585.1| Sua5/YciO/YrdC family protein [Candidatus Pelagibacter sp. HTCC7211] gi|207083158|gb|EDZ60584.1| Sua5/YciO/YrdC family protein [Candidatus Pelagibacter sp. HTCC7211] Length = 310 Score = 276 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 108/322 (33%), Positives = 170/322 (52%), Gaps = 17/322 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ + + ++KA ++LD IA+PTETVYGLA ++ + A+++++++KKRP+ NPL Sbjct: 1 MKTI----QSNIKKAKKYLDNNDCIAVPTETVYGLAGNAYSNIAVKKIFKLKKRPSNNPL 56 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 I H +I+ +K +++ L K F PGP+T VL L I T K+ R P Sbjct: 57 IVHYYNINKLKNDCNINENFKKLYKRFSPGPITYVLSLKKNCKISKFVTNKQKSLAVRFP 116 Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 KKL++ +PLA PSAN S ++S + ++ I++GG IG+EST Sbjct: 117 KHPLFKKLLKNLDYPLAAPSANISTKLSSVQASDV-KEEFGSKVRYILNGGKCNIGVEST 175 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 I+N+ K +LR GGLEI +++ + ++ ++ +PG HY+P +R+ Sbjct: 176 IINLT--NKPTLLRYGGLEISRIEKILKKKISININSKKKI-APGQFPLHYSPGVPLRVN 232 Query: 240 A--IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297 N LI+ N+ KN LSK L EAA NL++ ++ G I Sbjct: 233 VKKSKSNEAFVLIKKRNINSKNYY------YLSKKNNLNEAAKNLYSILRKIKKDGYKMI 286 Query: 298 AFSSIPNHGLGIAINNRLERAA 319 A IPN G+G IN+RL RA+ Sbjct: 287 AVEKIPNIGIGKTINDRLNRAS 308 >gi|170693448|ref|ZP_02884607.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia graminis C4D1M] gi|170141603|gb|EDT09772.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia graminis C4D1M] Length = 359 Score = 276 bits (708), Expect = 3e-72, Method: Composition-based stats. Identities = 93/330 (28%), Positives = 149/330 (45%), Gaps = 23/330 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + A LDAG +A PTETVYGL D+ NP A+ R+Y K RPA +P+I H++ Sbjct: 28 AAQIEHAAALLDAGGLVAFPTETVYGLGGDAENPDAVARIYAAKGRPANHPVIVHLAPQG 87 Query: 69 MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + + L FWPGPLTL+L + I + + R P + Sbjct: 88 DPNYWVEHLPQEAQRLIDAFWPGPLTLILKRAA--RIPAAVSGGQDSVGLRCPSHPVAQA 145 Query: 127 LIETY------GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L+E + +A PSANR G +S T +H+ I ++DGG S +G+ESTI Sbjct: 146 LLEAFSSLRAGHGGVAAPSANRFGHVSPTTAQHV-RDEFGSAI-HVLDGGASDVGIESTI 203 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQVRLR 239 V++ +LRPG + + + + + + P++ G LK+HYAPR+ + L Sbjct: 204 VDLSRGFPA-LLRPGRVTPQDIADVLGEAPRLPDGSDATAPRASGTLKAHYAPRTPLALL 262 Query: 240 AIHVNPREALIRFGNVPIK---------NIENAIISLNLSKTGKLKEAAFNLFNYMKIAD 290 + R + + +A ++ A L+ ++ D Sbjct: 263 PFNALEPLLAARAAGERVALVARASRAGHWADAEGVHFIAAPEDPHVYARELYGLLRALD 322 Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + + I +P+ IA+N+RL RAAA Sbjct: 323 RANVARILIEKLPDTIEWIAVNDRLGRAAA 352 >gi|72162360|ref|YP_290017.1| translation factor SUA5 [Thermobifida fusca YX] gi|5107073|gb|AAD39949.1|AF144563_3 unknown [Thermobifida fusca] gi|71916092|gb|AAZ55994.1| translation factor SUA5 [Thermobifida fusca YX] Length = 335 Score = 276 bits (708), Expect = 3e-72, Method: Composition-based stats. Identities = 104/329 (31%), Positives = 166/329 (50%), Gaps = 21/329 (6%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 + AL +A L AG +A PTETVYGL D+ NP A+ R++ K RPA +PLI H Sbjct: 12 VRAVSPAALDEAVRVLRAGGLVAFPTETVYGLGADAANPAAVARIFAAKGRPADHPLIVH 71 Query: 64 VSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC- 121 V+ + A+ PL+ LA FWPGPLTL+L + + T T RVP Sbjct: 72 VASAESARDWAATFPPLARTLADAFWPGPLTLILPR--SAQVPDAVTGGRATVGLRVPDQ 129 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 L+E +G +A PSANR G++S T H+ ++ + + L++DGG +G+ESTIV Sbjct: 130 PVALALLERFGGGIAAPSANRFGRVSPTTAAHV-AADLGDRVDLVLDGGPCTVGVESTIV 188 Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL--- 238 V + ++ +LR GG+ + L ++ T ++PGML +HYAP ++V L Sbjct: 189 EV-ADGRLTVLRTGGITPDDLAAVTGAPVD--TTPTGPARAPGMLAAHYAPAARVVLAEA 245 Query: 239 --------RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD 290 + + R A++ +N+ ++ L ++ A L+ ++ D Sbjct: 246 AEAADTVAQWVEKGHRVAVLAETATVPENLPEGVVV--LPSPASARDYARVLYQRLRDVD 303 Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAA 319 +GA + G+G+A+ +RL RA+ Sbjct: 304 AAGADVVVAIPPEPAGIGLAVRDRLLRAS 332 >gi|302864546|ref|YP_003833183.1| Sua5/YciO/YrdC/YwlC family protein [Micromonospora aurantiaca ATCC 27029] gi|302567405|gb|ADL43607.1| Sua5/YciO/YrdC/YwlC family protein [Micromonospora aurantiaca ATCC 27029] Length = 323 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 117/316 (37%), Positives = 173/316 (54%), Gaps = 11/316 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A L AG +A PTETVYGL ++ + A R++E K RP+ +PLI H++D + Sbjct: 12 ERGIDEAAAVLRAGGLVAFPTETVYGLGANALDARAAARIFEAKARPSFDPLISHLADAA 71 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKK 126 + V LAK FWPGPLTL++D I P+ T+ L T RVP + Sbjct: 72 DLAALVGEVPAAVAELAKRFWPGPLTLIVDRPEI--IPPIVTSGLDTMAVRVPDEPSARA 129 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LI G P+A PSANR GQ+S T +H++ + + + +++DGG ++ G+ESTIV+ + E Sbjct: 130 LIAAAGVPVAAPSANRFGQLSPTRAEHVV-AGLGGAVDVVLDGGPTRCGIESTIVDARGE 188 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV--N 244 + V +LR G L +E L A+ +E + P +PG L +HYAPR+ +RL A Sbjct: 189 RPV-VLRLGALPVEALVEAVG-PVEVRQGSSGQPVAPGTLAAHYAPRTPLRLGAAAEPGG 246 Query: 245 PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPN 304 R + F P + A+ LS G + AA LF+ + D +G + I +P Sbjct: 247 GRRGFLAFREPPADSDWAAVEV--LSPDGDVTAAAARLFDALHRLDAAGVTEIVAEPVPE 304 Query: 305 HGLGIAINNRLERAAA 320 G+G AIN+RL RAAA Sbjct: 305 TGVGRAINDRLRRAAA 320 >gi|103487254|ref|YP_616815.1| Sua5/YciO/YrdC/YwlC [Sphingopyxis alaskensis RB2256] gi|98977331|gb|ABF53482.1| translation factor SUA5 [Sphingopyxis alaskensis RB2256] Length = 315 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 120/300 (40%), Positives = 164/300 (54%), Gaps = 13/300 (4%) Query: 21 AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80 G P+A+PTETVYGLA D+R+ + R+Y K RP NPLI HV +++ + Sbjct: 27 GGQPVAVPTETVYGLAADARSADGVARIYAAKGRPDFNPLIVHVPNLAAAETLGQFGAAE 86 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPLAIPS 139 LA FWPGPLTLV+ ++ + ++TA L T RVP + L+ G PLA PS Sbjct: 87 RALATRFWPGPLTLVVPRVAGCPVASIATAGLDTIALRVPGHRAMQALLAGTGAPLAAPS 146 Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEI 199 AN SG++S T H+L +S+ I L+ID G ++ G+ESTI VQ + + +LRPG + Sbjct: 147 ANASGRVSPTRADHVL-ASLDGRIALVIDDGPTRAGVESTIARVQ-DGAIEVLRPGPVTA 204 Query: 200 ETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKN 259 L A + + + S +PGML SHYAP VRL A+ E I FG + Sbjct: 205 AMLAMASGLPV--IERKGSDIVAPGMLASHYAPGKPVRLGAVEFADDEFGIGFGGLAGD- 261 Query: 260 IENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 +LS G L EAA LF+ + S +IA ++IP GLG AIN+RL RAA Sbjct: 262 -------YDLSAAGDLTEAAARLFDALHAGAASAKPNIAVAAIPVEGLGAAINDRLARAA 314 >gi|315500839|ref|YP_004079726.1| sua5/ycio/yrdc/ywlc family protein [Micromonospora sp. L5] gi|315407458|gb|ADU05575.1| Sua5/YciO/YrdC/YwlC family protein [Micromonospora sp. L5] Length = 323 Score = 275 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 117/316 (37%), Positives = 172/316 (54%), Gaps = 11/316 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A L AG +A PTETVYGL ++ + A R++E K RP+ +PLI H++D + Sbjct: 12 ERGIDEAAAVLRAGGLVAFPTETVYGLGANALDARAAARIFEAKARPSFDPLISHLADAA 71 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKK 126 + V LAK FWPGPLTL++D I P+ T+ L T RVP + Sbjct: 72 DLAALVGEVPAAVAELAKRFWPGPLTLIVDRPEI--IPPIVTSGLDTMAVRVPDESSARA 129 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LI G P+A PSANR GQ+S T +H++ + + + +++DGG ++ G+ESTIV+ + E Sbjct: 130 LIAAAGVPVAAPSANRFGQLSPTRAEHVV-AGLGGAVDVVLDGGPTRCGIESTIVDARGE 188 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV--N 244 + V +LR G L +E L A+ +E + P +PG L +HYAPR+ +RL A Sbjct: 189 RPV-VLRLGALPVEALVEAVG-PVEVRQGSSGQPVAPGTLAAHYAPRTPLRLGAAAEPGG 246 Query: 245 PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPN 304 R + F P A+ LS G + AA LF+ + D +G + I +P Sbjct: 247 GRRGFLAFREPPADGDWAAVEV--LSPDGDVTAAAARLFDALHRLDAAGVTEIVAEPVPE 304 Query: 305 HGLGIAINNRLERAAA 320 G+G AIN+RL RAAA Sbjct: 305 TGVGRAINDRLRRAAA 320 >gi|187918590|ref|YP_001884153.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia hermsii DAH] gi|119861438|gb|AAX17233.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia hermsii DAH] Length = 336 Score = 275 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 105/332 (31%), Positives = 160/332 (48%), Gaps = 18/332 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ I + + + KA +F+ G + PTETVYG+ ++ N A+R ++ +KKRP NPL Sbjct: 4 MKT-EIIEQSEIEKAAKFIRTGELVVFPTETVYGIGANAYNDDAVRMIFLVKKRPITNPL 62 Query: 61 ICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I HV I + + P +L L + F PGPLT +L I L + L++ R+ Sbjct: 63 IVHVESIEKINELVEHIPKSALILMQKFTPGPLTFILKNAGK--ISNLISGGLESIAVRI 120 Query: 120 PC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII-DGGISKIGLE 177 P KLI+ G P+A PSAN S + S TN K + + + II SKIG+E Sbjct: 121 PSEPVALKLIKISGVPIAAPSANLSRRPSATNFKMAIKE-LDGLVKGIIKKNEESKIGIE 179 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPRSQ 235 ST++ + + ILRPG + E ++R + E +EY V + +SPG L HY PR Sbjct: 180 STVIGFDLKGNISILRPGSITKEMIERELKGEFRVEYSVGKEMLSKSPGNLLEHYRPRIP 239 Query: 236 VRLRAIHVNPREALIRFGNVPIKNIENAIISL--------NLSKTGKLKEAAFNLFNYMK 287 V L N R R + + N+ L+E A N++ Sbjct: 240 VYLFKQKDNIRCYASRQDTKVLITRDTFKSYWFNGFWNMNNICVFNTLEEYAKNIYKVFV 299 Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 ++ I + N+ LG +INNRL++A+ Sbjct: 300 ESEKE-YKQILAEFVDNNQLGYSINNRLKKAS 330 >gi|187734781|ref|YP_001876893.1| Sua5/YciO/YrdC/YwlC family protein [Akkermansia muciniphila ATCC BAA-835] gi|187424833|gb|ACD04112.1| Sua5/YciO/YrdC/YwlC family protein [Akkermansia muciniphila ATCC BAA-835] Length = 348 Score = 275 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 113/321 (35%), Positives = 160/321 (49%), Gaps = 25/321 (7%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD----PLS 80 + IPTETVYGL D+ NP A+ R++E K RP+ +PLI HV S V+K+ +V L Sbjct: 31 VGIPTETVYGLGADALNPEAVARIFEAKGRPSFDPLIIHVHHGSEVEKYTAVPEGLKDLV 90 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGHPLAIPS 139 LA FWPGPLTLVL I + T+ L T RV + + + G P+A PS Sbjct: 91 HTLASRFWPGPLTLVLPKADI--IPDIVTSGLPTVAVRVSAHPAMRGVAKALGRPIAAPS 148 Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV----NVQCEKKVRILRPG 195 ANR G IS T+ + + I +I+D G GLESTIV + + + + +LR G Sbjct: 149 ANRFGHISPTSASAVQKE-LGGSIEMILDAGACSEGLESTIVRPVLDEKGKPSLELLREG 207 Query: 196 GLEIETLKRAISVELE----YCVDETSTPQSPGMLKSHYAPRSQV-RLRAIHVNPREALI 250 + E + + V V E S +PG L SHYAPR + L + Sbjct: 208 PVTREQFRNLVKVVRRKPSCRPVSEESPADAPGQLTSHYAPRKPMLLLEPGENFAPVEGV 267 Query: 251 RFGNVPIKNIE------NAIISLNLSK-TGKLKEAAFNLFNYMKIADDSGA-SSIAFSSI 302 ++G + + + + +S +G+L EAA LF M+ D++ A I S+ Sbjct: 268 KYGLLSYEGTSALAREGDWAEVVAMSPGSGRLAEAAVRLFALMRQMDENEAIDVIVAESV 327 Query: 303 PNHGLGIAINNRLERAAAPRN 323 P GLG AI +RL RA+A R Sbjct: 328 PESGLGRAIMDRLRRASAVRE 348 >gi|307730877|ref|YP_003908101.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. CCGE1003] gi|307585412|gb|ADN58810.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. CCGE1003] Length = 357 Score = 275 bits (705), Expect = 6e-72, Method: Composition-based stats. Identities = 92/336 (27%), Positives = 151/336 (44%), Gaps = 24/336 (7%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 ++ +T + + A LDAG +A PTETVYGL D++NP A+ R+Y K RPA +P+I Sbjct: 20 VLPVT-AAQIEHAAALLDAGGLVAFPTETVYGLGGDAQNPDAVARIYAAKGRPANHPVIV 78 Query: 63 HVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 H++ + + L FWPGPLTL+L + I + + R P Sbjct: 79 HLAPQGDPGYWVEQLPQEAQRLIDAFWPGPLTLILKRAA--RIPAAVSGGQDSVGLRCPS 136 Query: 122 G-FTKKLIETY------GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174 + L+E + +A PSANR G +S T +H+ ++DGG S + Sbjct: 137 HPVAQALLEAFSALRSGHGGVAAPSANRFGHVSPTTAQHVRDEF--GAAIHVLDGGASDV 194 Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPR 233 G+ESTI+++ +LRPG + + + + + + P++ G LK+HYAPR Sbjct: 195 GIESTILDLSRGFPA-LLRPGRVTPQEIADVLGEAPRLPDGSDATAPRASGTLKAHYAPR 253 Query: 234 SQV---------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFN 284 + + L A + +A ++ A L+ Sbjct: 254 TPLALLPFNALEPLLAGRAAGERVALVARASRAGQWADAEGVHFIAAPEDPHVYARELYG 313 Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ D + + I +P+ IA+N+RL RAAA Sbjct: 314 LLRALDRANVARILIEKLPDTIEWIAVNDRLGRAAA 349 >gi|295677567|ref|YP_003606091.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. CCGE1002] gi|295437410|gb|ADG16580.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. CCGE1002] Length = 350 Score = 275 bits (703), Expect = 9e-72, Method: Composition-based stats. Identities = 93/330 (28%), Positives = 148/330 (44%), Gaps = 23/330 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + A LDAG +A PTETVYGL D+ NP A+ R+Y K RPA +P+I H++ Sbjct: 19 AAQIEHAAALLDAGGLVAFPTETVYGLGGDAENPDAVARIYAAKGRPANHPVIVHLAPHG 78 Query: 69 MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 P + L FWPGPLTL+L + I + + R P + Sbjct: 79 DPNYWVEHLPADAQRLIDAFWPGPLTLILKRAA--RIPAAVSGGQDSVGLRCPSHPVAQA 136 Query: 127 LIETY------GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L+E + +A PSANR G +S T +H+ I ++DGG S +G+ESTI Sbjct: 137 LLEAFSALRGGHGGVAAPSANRFGHVSPTTAQHV-RDEFGSAI-HVLDGGASDVGIESTI 194 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQV--- 236 +++ +LRPG + + + + + + P++ G LK+HYAPR+ + Sbjct: 195 LDLSRGFPA-LLRPGRVTPQDIADVLGEAPRLPDGSDATAPRASGTLKAHYAPRTPLALL 253 Query: 237 ------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD 290 L A+ + +A ++ A L+ ++ D Sbjct: 254 PFGELEPLLAVREPGERVALVARASRAGQWADADGVYFVAAPEDPHVYARELYGLLRALD 313 Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + + I +P+ IA+N+RL RAAA Sbjct: 314 RANVTRILIEKLPDTIEWIAVNDRLGRAAA 343 >gi|237748715|ref|ZP_04579195.1| translation factor SUA5 [Oxalobacter formigenes OXCC13] gi|229380077|gb|EEO30168.1| translation factor SUA5 [Oxalobacter formigenes OXCC13] Length = 342 Score = 275 bits (703), Expect = 9e-72, Method: Composition-based stats. Identities = 92/331 (27%), Positives = 153/331 (46%), Gaps = 27/331 (8%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S+ +R A L++G +A PTETVYGL D+ N A ++ +K RPA +PLI HV+ + Sbjct: 6 SDDVRAAARMLESGQLVAFPTETVYGLGADAENAVATAAIFALKNRPANHPLIVHVAPDA 65 Query: 69 MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + +S + + L FWPGPLTL+L + I + R P + Sbjct: 66 DIGYWSSYIPDEAKKLIDAFWPGPLTLILKKAAH--IPAAVAGGQDSIGLRCPSHPVAQA 123 Query: 127 LIETY---GHPLAIPSANRSGQISITNVKHILSSSICK-EIPLIIDGGISKIGLESTIVN 182 L+ + +A PSANR G +S T +H+ + I++GG S++G+ESTI++ Sbjct: 124 LLRAFKGGKGGIAGPSANRFGHVSPTRAEHVREEFGDDPRLAAILEGGQSEVGIESTILD 183 Query: 183 VQ---CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 + V +LRPG + + I E + + + P++ G L SHYAP + V + Sbjct: 184 LSRIETAGPV-LLRPGKIHSLQIAEVIGRMPE--MPDAAAPRASGTLASHYAPLTPVVIV 240 Query: 240 AIHV-----------NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKI 288 N R AL+ + ++ + + L + + + L+ ++ Sbjct: 241 PEKDLTSVLKQLEKKNIRVALLHYSSLSSDRKQPLVKQTGLFCSPDV--YSHQLYASLRE 298 Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 D A I + P+ +N+RL RAA Sbjct: 299 LDRHRADVILVEATPDTEAWKGVNDRLRRAA 329 >gi|116620704|ref|YP_822860.1| translation factor SUA5 [Candidatus Solibacter usitatus Ellin6076] gi|116223866|gb|ABJ82575.1| translation factor SUA5 [Candidatus Solibacter usitatus Ellin6076] Length = 288 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 92/307 (29%), Positives = 141/307 (45%), Gaps = 25/307 (8%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A E + G +A PTETVYGL ++ + A+ R++E K RP +PLI HV + M + + Sbjct: 4 AAELIRGGKLVAFPTETVYGLGANALDADAVARIFEAKGRPRTSPLIVHVDSVEMAQTLS 63 Query: 75 SVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYG 132 P + LA+++WPGPLTLV+ I + TA L T R+P +LI G Sbjct: 64 DDWPDTAELLARIYWPGPLTLVV--AKHPGIPDIVTAGLPTVGLRMPAHPMALELIREAG 121 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192 P+A PSANR ++S T+ HI S +DGG S++G+EST++++ + L Sbjct: 122 VPIAAPSANRFTELSPTSAAHIPES----LADFTLDGGPSQVGIESTVLSLVAGPTL--L 175 Query: 193 RPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRF 252 RPG + ++ L+ I +PGM HY P + + L + +R Sbjct: 176 RPGVIPVDELESLIGPIARGVAHVQDAHPAPGMHTRHYRPSTPLYLGEFPAEGKGVFLRI 235 Query: 253 GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAIN 312 G + + A L+ + D G IA P+ + Sbjct: 236 GYEMPE---------------DPRAYAAALYETLHHLDTEGLDWIAVEVPPDTPEWAGVL 280 Query: 313 NRLERAA 319 +RL RAA Sbjct: 281 DRLRRAA 287 >gi|327401143|ref|YP_004341982.1| Sua5/YciO/YrdC/YwlC family protein [Archaeoglobus veneficus SNP6] gi|327316651|gb|AEA47267.1| Sua5/YciO/YrdC/YwlC family protein [Archaeoglobus veneficus SNP6] Length = 317 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 105/315 (33%), Positives = 159/315 (50%), Gaps = 25/315 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E + G +A PTETVYGL D+ N A+RR++E K+RP NPLI HVS + V Sbjct: 16 IARAAEIIKKGGLVAFPTETVYGLGGDALNENAVRRIFEAKERPPRNPLIVHVSSVEQVY 75 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 + A V+ ++ L F+PGPL LVL + ++TA +K R+P LIE Sbjct: 76 RIAEVNEVAEKLMGEFFPGPLALVL--KKKDVVPDITTAGMKKVAVRMPDHKVALTLIEL 133 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 P+A PSAN SG+ S T +H++ + I I+D G KIG+EST+++V K + Sbjct: 134 SETPIAAPSANISGRPSPTKAEHVI-EDLAGRIDAILDAGEVKIGIESTVLDVTS-KPAK 191 Query: 191 ILRPGGLEIETL-KRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP---- 245 ILR G + E L +R I VE+ HY ++++ + Sbjct: 192 ILRLGAITPEMLVERGIEVEVIDTRP-----------FRHYQTKAKLYVVNAENLAEFVG 240 Query: 246 --REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303 RE ++ G I +A + L K +++ A NLF+ ++ D SG I ++ Sbjct: 241 SLREKGVKVGVARITAECDADRIVELGK--SIEDVAKNLFSALRELDRSGVDIIVVEAVE 298 Query: 304 NHGLGIAINNRLERA 318 GLG I ++LE A Sbjct: 299 RKGLGKVIMSKLEEA 313 >gi|313673749|ref|YP_004051860.1| sua5/ycio/yrdc/ywlc family protein [Calditerrivibrio nitroreducens DSM 19672] gi|312940505|gb|ADR19697.1| Sua5/YciO/YrdC/YwlC family protein [Calditerrivibrio nitroreducens DSM 19672] Length = 341 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 111/336 (33%), Positives = 166/336 (49%), Gaps = 31/336 (9%) Query: 2 QIMSITDSN---ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58 +I+++T+ N AL+ A E + G IPTETVYG+A N AI++++E K RP N Sbjct: 8 KIITLTEENFKEALKIASEIISNGGIAVIPTETVYGIAASIYNSDAIQKIFEAKNRPMDN 67 Query: 59 PLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 PLI H+SD + ++ S L + FWPGPLTL+ + + T L T Sbjct: 68 PLIVHISDPKQLNDLTDEINETSRKLIQQFWPGPLTLIF--KAKEGVDKKVTGGLNTIAV 125 Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P FT KLIE G PLA PSAN SG+ S T + I + ++ +I+D GI + GL Sbjct: 126 RMPDNAFTLKLIEMTG-PLAAPSANISGKPSGTEISDIF-EELNGKVDVIVDEGIVRCGL 183 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAP---- 232 EST++N V ILR G + E +++ + V E + SPG HYAP Sbjct: 184 ESTVINTLINPPV-ILRKGTISKEMIEKVVGVVTFSSPGEGT--ISPGTKYKHYAPGVKT 240 Query: 233 ----------RSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNL 282 + + I + + +I FG + I+ I NLS G + A+ Sbjct: 241 TYIKKISSPDHFNLLMGTISKDKKIGIIHFG-LDIEGSYKNIKIENLS--GNPEYASKFF 297 Query: 283 FNYMKIADDSGASSIAFSSIPN-HGLGIAINNRLER 317 + ++ + S I +P HGL I++ +R+ER Sbjct: 298 YRTLRKMEKS-VDEIIILPLPEHHGLWISLEDRIER 332 >gi|76808623|ref|YP_332415.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 1710b] gi|126440362|ref|YP_001057891.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 668] gi|226199432|ref|ZP_03794990.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei Pakistan 9] gi|254187567|ref|ZP_04894079.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei Pasteur 52237] gi|254261671|ref|ZP_04952725.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 1710a] gi|76578076|gb|ABA47551.1| Sua5/YciO/YrdC/YwlC family protein, putative [Burkholderia pseudomallei 1710b] gi|126219855|gb|ABN83361.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 668] gi|157935247|gb|EDO90917.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei Pasteur 52237] gi|225928508|gb|EEH24537.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei Pakistan 9] gi|254220360|gb|EET09744.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 1710a] Length = 342 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 95/328 (28%), Positives = 150/328 (45%), Gaps = 24/328 (7%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + A+ A LDAG +A PTETVYGL D++NP A+ R+Y K RPA +P+I H++ S Sbjct: 11 AEAIEDAAARLDAGELVAFPTETVYGLGADAQNPAAVARIYAAKGRPANHPVIVHLAPGS 70 Query: 69 MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 P + L FWPGPLTL+L T I + + R P + Sbjct: 71 DPGYWVEALPADAKKLIDAFWPGPLTLILKR--ATHIPDAVSGGQDSVGLRCPSHPVAQA 128 Query: 127 LIETYG------HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L+ + +A PSANR G +S T +H+ + ++DGG S +G+ESTI Sbjct: 129 LLRAFDARRGGHGGVAAPSANRFGHVSPTTAQHVRDEF--GDAVHVLDGGPSDVGIESTI 186 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQVRLR 239 +++ +LRPG + + + V + + P++ G LK+HYAPR+ + L Sbjct: 187 LDLSRGFPA-LLRPGHVSPRQIADVLGVAPRLPDGSDATAPRASGTLKAHYAPRTPLALA 245 Query: 240 AIH-VNPREALIRFGNVPIK---------NIENAIISLNLSKTGKLKEAAFNLFNYMKIA 289 A + P A R P+ +A ++ A L+ ++ Sbjct: 246 AFERLEPLLAAARDTGEPVALVARASRAGAWAHAAGVHFVAAPEDPAAYARELYGLLRAL 305 Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLER 317 D + + I +P+ A+N+RL R Sbjct: 306 DRAQVARILVEKLPDTAEWTAVNDRLGR 333 >gi|330818174|ref|YP_004361879.1| Sua5/YciO/YrdC/YwlC [Burkholderia gladioli BSR3] gi|327370567|gb|AEA61923.1| Sua5/YciO/YrdC/YwlC [Burkholderia gladioli BSR3] Length = 351 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 87/335 (25%), Positives = 152/335 (45%), Gaps = 24/335 (7%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 + A+ +A L AG +A PTETVYGL D+ +P A+ R+Y K RP+ +P+I H+ Sbjct: 12 PMPPDAAIEEAATKLAAGQLVAFPTETVYGLGADAESPEAVARIYAAKGRPSNHPVIVHL 71 Query: 65 SDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 + + L FWPGPLTL+L + I + + R P Sbjct: 72 PPGGDPGYWVESLPADAQKLIDAFWPGPLTLILKRAAH--IPDAVSGGQDSVALRCPSHP 129 Query: 123 FTKKLIETY------GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 ++L+ + +A PSANR G +S T +H+ + ++DGG +++G+ Sbjct: 130 VAQRLLAAFSALRGGHGGVAGPSANRFGHVSPTTAQHV-REEFGDSV-HVLDGGAAEVGI 187 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQ 235 ESTI+++ +LRPG + + + + + + P++ G LK+HYAPR+ Sbjct: 188 ESTILDLSRGFPA-LLRPGHVTPQQIAAVLGTVPRLPDGSDATAPRASGTLKAHYAPRTP 246 Query: 236 ----------VRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNY 285 + L A + ++ AI ++ + A L++ Sbjct: 247 LALLPFDRLELLLDAAAEAGEPVALVARASSARDWSTAIGVHFVAAPEDPQAYARELYSL 306 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ D + + I +P+ +A+N+RL RAAA Sbjct: 307 LRALDRAQVTRILIEQLPDTAEWVAVNDRLGRAAA 341 >gi|94309452|ref|YP_582662.1| translation factor SUA5 [Cupriavidus metallidurans CH34] gi|93353304|gb|ABF07393.1| putative translation factor (SUA5) [Cupriavidus metallidurans CH34] Length = 330 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 88/329 (26%), Positives = 144/329 (43%), Gaps = 20/329 (6%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 + + L +A L+AG +A PTETVYGL D+ NP A+ R++ K RP+ +P+I HV Sbjct: 4 RMPTAAELDEAVRLLEAGELVAFPTETVYGLGADAENPEAVARIFAAKGRPSNHPVIVHV 63 Query: 65 SDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 D + V + P + L FWPGPLT++L + I + R P Sbjct: 64 VDGADVGYWSDDVPEAAQKLIDAFWPGPLTIILKRAAH--IPAAVAGGQDSIGLRCPSHP 121 Query: 124 TKKLI----ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + + +A PSAN+ GQ+S T +H+ + +++G +G+ES+ Sbjct: 122 VAQALLSRFRRGRGGIAAPSANKFGQVSPTTAEHV-RDEFGGSV-YVLEGDGVDVGIESS 179 Query: 180 IVNVQ---CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQV 236 IV++ V +LRPG + + + + + P++ G LK+HYAPR+ + Sbjct: 180 IVDLSRLDTAGPV-LLRPGAITAAMMADVLGT--MPLPPDAAAPRASGTLKAHYAPRTTL 236 Query: 237 RLRAIHVNPR--EALIRFGNVPIKNIENAIISLNLS---KTGKLKEAAFNLFNYMKIADD 291 L P+ L G + A + A L+ ++ D Sbjct: 237 TLAQADALPQYLHGLSADGRLAWVGRAPATSDPRCTFVEAPATPDAYAQELYRLLRRLDK 296 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320 G + F +P + +RL RAAA Sbjct: 297 EGFQRLVFEPLPESLEWDGVRDRLGRAAA 325 >gi|78189525|ref|YP_379863.1| Sua5/YciO/YrdC/YwlC [Chlorobium chlorochromatii CaD3] gi|78171724|gb|ABB28820.1| translation factor SUA5 [Chlorobium chlorochromatii CaD3] Length = 324 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 98/323 (30%), Positives = 154/323 (47%), Gaps = 12/323 (3%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M + +TDS A +A L+ G +A PTETVYGL + A+++++ K RP+ NPL Sbjct: 9 MHTL-LTDSPA--EAAALLNGGKIVAFPTETVYGLGATINHSEALKQIFVAKGRPSDNPL 65 Query: 61 ICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I H++ + K A+ P + + F+PGPLTLVL + L TA L++ R Sbjct: 66 ILHIAHPDNIGKVAATVPRYAERFIEKFFPGPLTLVLPKQP--QVPELVTAGLQSVGVRC 123 Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P + L+ P+A PSANRSG+ S T+ + + + I ++ IGLES Sbjct: 124 PAHPMAQALLALVNSPVAAPSANRSGKPSATSWETVY-DDLNGRIDGLLRSAPCTIGLES 182 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAI-SVELEYCVDETSTPQSPGMLKSHYAPRSQVR 237 TIV+ + +LR G + +E L+ + S+ + P+SPG+ HYAP + + Sbjct: 183 TIVDCTANTPL-LLRAGAITLEQLQAVVPSLRVNQPTHNNEPPKSPGLKYPHYAPHATIE 241 Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297 L A+ P + I N + + ++ LF + + D +I Sbjct: 242 LLAVGAVPLTLPPNSAYIGIAPPPNGATLV--MQCASIEAYGNALFQFFRTCDAHAIRTI 299 Query: 298 AFSSIPNHGLGIAINNRLERAAA 320 + GLG AI +RL RAA Sbjct: 300 YCELPTSDGLGRAIGDRLLRAAG 322 >gi|328773398|gb|EGF83435.1| hypothetical protein BATDEDRAFT_4477 [Batrachochytrium dendrobatidis JAM81] Length = 324 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 106/324 (32%), Positives = 166/324 (51%), Gaps = 34/324 (10%) Query: 24 PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK-----KHASVDP 78 +A PTETVYGLA ++ + A++ ++ K+RP+ NPLI HVS I M++ + Sbjct: 1 VVAFPTETVYGLAANALDAAAVQGIFSAKQRPSDNPLIVHVSSIQMLESLLPPSLPHLPS 60 Query: 79 LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGHPLAI 137 + + L FWPGPLT++L I L TA+ T R+P LI G PLA Sbjct: 61 IYVALINKFWPGPLTILLPKGPH--IPNLVTASHDTVAVRMPSHPVALGLIAQCGFPLAA 118 Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197 PSAN SG+ S T +H+ + + IP+I+DGG+ + GLEST+V+ ILRPGG+ Sbjct: 119 PSANTSGRPSPTLAEHVF-ADLHSRIPMIVDGGMCRSGLESTVVDAL-RNPPAILRPGGI 176 Query: 198 EIETLK-----RAISVELEYCVDET--STPQSPGMLKSHYAPRSQVRLRAIHVNP----- 245 E ++ +++ + VD+ P +PGM HY P ++V L I N Sbjct: 177 TFEQIRLIAGFENVTIYNTHFVDKGLEEAPTTPGMKYRHYTPNAEVVLIEIGANAIKLDE 236 Query: 246 ---------REALIRFGNVPIK-NIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 R ++R G+ K ++ + ++L T +E A NLF ++ + + Sbjct: 237 TNCVDPECTRVGVLRAGSTIDKYDVCKEAVEIHLGATA--EEIARNLFKGLRDLEQHYCA 294 Query: 296 SIAFSSIPNHGLGIAINNRLERAA 319 I IP+ G G+A+ NR+ +A+ Sbjct: 295 CIIVEGIPDVGHGLAVMNRIRKAS 318 >gi|323527240|ref|YP_004229393.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. CCGE1001] gi|323384242|gb|ADX56333.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. CCGE1001] Length = 360 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 92/330 (27%), Positives = 147/330 (44%), Gaps = 23/330 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + A LDAG +A PTETVYGL D+ NP A+ R+Y K RPA +P+I H++ Sbjct: 28 AEQIAHAAALLDAGGLVAFPTETVYGLGGDAENPDAVARIYAAKGRPANHPVIVHLAPQG 87 Query: 69 MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + + L FWPGPLTL+L + I + + R P + Sbjct: 88 DPNYWVEHLPQEAQRLIDAFWPGPLTLILKRAA--RIPAAVSGGQDSVGLRCPSHPVAQA 145 Query: 127 LIETY------GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L+E + +A PSANR G +S T +H+ I ++DGG S +G+ESTI Sbjct: 146 LLEAFSALRSGHGGVAAPSANRFGHVSPTTAQHV-RDEFGSAI-HVLDGGASDVGIESTI 203 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQV--- 236 +++ +LRPG + + + + + + P++ G LK+HYAPR+ + Sbjct: 204 LDLSRGFPA-LLRPGRVTPQEIADVLGEAPRLPDGSDATAPRASGTLKAHYAPRTPLALL 262 Query: 237 ------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD 290 L A + +A ++ A L+ ++ D Sbjct: 263 PFPALEPLLAARAAGERVALVARASRAGQWADAEGVHFIAAPEDPHVYARELYGLLRALD 322 Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + + I +P+ IA+N+RL RAAA Sbjct: 323 RANVARILIEKLPDTIEWIAVNDRLGRAAA 352 >gi|53718441|ref|YP_107427.1| hypothetical protein BPSL0802 [Burkholderia pseudomallei K96243] gi|53725053|ref|YP_102128.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei ATCC 23344] gi|67641175|ref|ZP_00439959.1| Sua5/YciO/YrdC family protein [Burkholderia mallei GB8 horse 4] gi|121601543|ref|YP_991945.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei SAVP1] gi|124384353|ref|YP_001028391.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei NCTC 10229] gi|126449438|ref|YP_001079624.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei NCTC 10247] gi|126453889|ref|YP_001065126.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 1106a] gi|167002687|ref|ZP_02268477.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei PRL-20] gi|217419510|ref|ZP_03451016.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 576] gi|237811040|ref|YP_002895491.1| Sua5/YciO/YrdC family protein [Burkholderia pseudomallei MSHR346] gi|242314543|ref|ZP_04813559.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 1106b] gi|254176690|ref|ZP_04883347.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei ATCC 10399] gi|254181609|ref|ZP_04888206.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 1655] gi|254196617|ref|ZP_04903041.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei S13] gi|254203808|ref|ZP_04910168.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei FMH] gi|254208786|ref|ZP_04915134.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei JHU] gi|254360161|ref|ZP_04976431.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei 2002721280] gi|52208855|emb|CAH34794.1| conserved hypothetical protein [Burkholderia pseudomallei K96243] gi|52428476|gb|AAU49069.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei ATCC 23344] gi|121230353|gb|ABM52871.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei SAVP1] gi|124292373|gb|ABN01642.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei NCTC 10229] gi|126227531|gb|ABN91071.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 1106a] gi|126242308|gb|ABO05401.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei NCTC 10247] gi|147745320|gb|EDK52400.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei FMH] gi|147750662|gb|EDK57731.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei JHU] gi|148029401|gb|EDK87306.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei 2002721280] gi|160697731|gb|EDP87701.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei ATCC 10399] gi|169653360|gb|EDS86053.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei S13] gi|184212147|gb|EDU09190.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 1655] gi|217396814|gb|EEC36830.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 576] gi|237504349|gb|ACQ96667.1| Sua5/YciO/YrdC family protein [Burkholderia pseudomallei MSHR346] gi|238522048|gb|EEP85495.1| Sua5/YciO/YrdC family protein [Burkholderia mallei GB8 horse 4] gi|242137782|gb|EES24184.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 1106b] gi|243061678|gb|EES43864.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei PRL-20] Length = 341 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 95/328 (28%), Positives = 150/328 (45%), Gaps = 24/328 (7%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + A+ A LDAG +A PTETVYGL D++NP A+ R+Y K RPA +P+I H++ S Sbjct: 10 AEAIEDAAARLDAGELVAFPTETVYGLGADAQNPAAVARIYAAKGRPANHPVIVHLAPGS 69 Query: 69 MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 P + L FWPGPLTL+L T I + + R P + Sbjct: 70 DPGYWVEALPADAKKLIDAFWPGPLTLILKR--ATHIPDAVSGGQDSVGLRCPSHPVAQA 127 Query: 127 LIETYG------HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L+ + +A PSANR G +S T +H+ + ++DGG S +G+ESTI Sbjct: 128 LLRAFDARRGGHGGVAAPSANRFGHVSPTTAQHVRDEF--GDAVHVLDGGPSDVGIESTI 185 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQVRLR 239 +++ +LRPG + + + V + + P++ G LK+HYAPR+ + L Sbjct: 186 LDLSRGFPA-LLRPGHVSPRQIADVLGVAPRLPDGSDATAPRASGTLKAHYAPRTPLALA 244 Query: 240 AIH-VNPREALIRFGNVPIK---------NIENAIISLNLSKTGKLKEAAFNLFNYMKIA 289 A + P A R P+ +A ++ A L+ ++ Sbjct: 245 AFERLEPLLAAARDTGEPVALVARASRAGAWAHAAGVHFVAAPEDPAAYARELYGLLRAL 304 Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLER 317 D + + I +P+ A+N+RL R Sbjct: 305 DRAQVARILVEKLPDTAEWTAVNDRLGR 332 >gi|300706558|ref|XP_002995535.1| hypothetical protein NCER_101537 [Nosema ceranae BRL01] gi|239604680|gb|EEQ81864.1| hypothetical protein NCER_101537 [Nosema ceranae BRL01] Length = 327 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 101/330 (30%), Positives = 166/330 (50%), Gaps = 19/330 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+++S + + + + ++ + + IPTETVYGLA N A++ ++ +KKRP NPL Sbjct: 1 MKVISTKNLD-INEVIKYFEQ-DVVVIPTETVYGLAASINNEQALKNIFRLKKRPIDNPL 58 Query: 61 ICHVSDISMVKKHA--SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 I HVS + M++ V + ++FWPGP++L+ + ++ TA L T R Sbjct: 59 IVHVSSLDMLRTIIEGEVPENYQKIIEIFWPGPISLLF--RANKNLSKNVTAGLNTVLVR 116 Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 +P +IE PLA PSAN SG+ S T V+H + PL +DGG K+GLE Sbjct: 117 MPDNKVVLDIIEKLNVPLAAPSANVSGKPSPTCVQHAI-DDFGDNCPLYLDGGECKVGLE 175 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAISVELEY---CVDETSTPQSPGMLKSHYAPRS 234 ST+ + E + LRPGG++I L+ I ++ +T PG HY+P + Sbjct: 176 STVFSYINEPII--LRPGGVKICELENIICKKINVNYLSFTGKNTTICPGQKYKHYSPIN 233 Query: 235 QVRLRAIHVNPREALIR----FGNVPIKNIENAIISLNLSKTG-KLKEAAFNLFNYMKIA 289 + + + LI+ G + N + I ++ + + G KE A N F ++ Sbjct: 234 KFIVITTDTINLKELIKNYKNVGILSHFNFKPQIENVTIFELGNNYKEVATNFFKGLRKL 293 Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAA 319 D + I S+P G+AI +R+++AA Sbjct: 294 DTT-CDIIITKSLPLEYEGMAIMDRMKKAA 322 >gi|149927700|ref|ZP_01915952.1| Sua5/YciO/YrdC/YwlC [Limnobacter sp. MED105] gi|149823526|gb|EDM82756.1| Sua5/YciO/YrdC/YwlC [Limnobacter sp. MED105] Length = 333 Score = 273 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 97/335 (28%), Positives = 169/335 (50%), Gaps = 21/335 (6%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 ++++ +D+N +++ + L G +A PTETV+GL AI+ +++ K RP +PLI Sbjct: 4 ELLAASDAN-IQRCAQALQNGQLVAFPTETVFGLGAAVSRLDAIQGIFKAKGRPTEHPLI 62 Query: 62 CHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 HV+ + + A + P L FWPGPLTLV+ + T + R P Sbjct: 63 AHVAPGANLVGWVAELTPTMQKLMNAFWPGPLTLVVP--KGERMPFEVTGGQNSVGIRCP 120 Query: 121 CGFTK-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 KL++ G P+A PSANR G++S T H+L+ + IP I+DG + ++G+EST Sbjct: 121 SHPVAIKLLKATGVPVAAPSANRFGKVSPTRASHVLAE-LGDRIPFILDGDVPEVGIEST 179 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETST----PQSPGMLKSHYAPRSQ 235 IV++ E+ ILRPG + ++ + V ++ V+ + T P+ G L+ HY+P ++ Sbjct: 180 IVSLLEEQPA-ILRPGAITAAQIEAVLGVPVKSHVEVSKTPHANPRVSGALEKHYSPDAK 238 Query: 236 VR------LRAIHVNPREALIRFGNVPIKNI----ENAIISLNLSKTGKLKEAAFNLFNY 285 V L A+ + + + + + + E L + + K E A L+ Sbjct: 239 VWVLQASELAALQLQNKTLCVGWTDEFLAQADALREKFGEVLVEALSDKPAEVAKALYAT 298 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ AD+ + F + A+N+RL+RA+A Sbjct: 299 LRQADELACKQLLFERPGQNQEWEAVNDRLKRASA 333 >gi|299067859|emb|CBJ39070.1| conserved protein of unknown function, translation factor domain, SUA5 type [Ralstonia solanacearum CMR15] Length = 336 Score = 273 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 98/331 (29%), Positives = 158/331 (47%), Gaps = 26/331 (7%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + + L +A L+AG +A PTETVYGL D+ NP AI R+Y +K RP+ +P+I HV Sbjct: 10 MPPAARLDEAARRLEAGELVAFPTETVYGLGADAENPQAIARIYALKGRPSNHPVIVHVV 69 Query: 66 DISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 D + + A P ++L L + FWPGPLTL+L I + R P Sbjct: 70 DGADLTYWADDVPGIALQLVEAFWPGPLTLILKRAPH--IPAAVAGGQDSVGLRCPSHPV 127 Query: 125 KKLI----ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 + + + +A PSAN+ GQ+S T +H+ + +++G +G+ESTI Sbjct: 128 AQALLSRFKRGRGGIAAPSANKFGQVSPTTAQHVRDEF--GDAVFVLEGDGVDVGIESTI 185 Query: 181 VNVQCEKK---VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVR 237 V++ + +LRPG + E + R V + + + P++ G L++HYAPR+ + Sbjct: 186 VDLSRLDQGVGPVLLRPGAITPEDIGRVTGV--MPSLPDAAAPRASGTLRAHYAPRTPLY 243 Query: 238 LRAIHVNPREALIRFGNVPI-KNIENAIISLNLSKTGK-------LKEAAFNLFNYMKIA 289 L A P R +P + I ++L A L+ ++ Sbjct: 244 LLAAADVP----ARLAALPAGQRIVWVGAPVDLPPGCDQHAAPATPAAYANTLYALLREL 299 Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 D G +I ++P+ A+N+RL RAAA Sbjct: 300 DRGGYHAIWLETLPDTSAWAAVNDRLRRAAA 330 >gi|319942512|ref|ZP_08016822.1| Sua5/YciO/YrdC/YwlC family protein [Sutterella wadsworthensis 3_1_45B] gi|319803915|gb|EFW00833.1| Sua5/YciO/YrdC/YwlC family protein [Sutterella wadsworthensis 3_1_45B] Length = 348 Score = 273 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 97/341 (28%), Positives = 151/341 (44%), Gaps = 32/341 (9%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 + D A+ +A L+AG +A+PTETVYGLA D+ A+ Y K RP +PLI H Sbjct: 12 VKPVDMAAIARAATILEAGGLVAMPTETVYGLAADADQEAAVTATYRAKGRPLNHPLIVH 71 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 V+ + A + P + LA +WPGPLT+VL T T R P Sbjct: 72 VASADDIPWWAEITPEAQKLADRYWPGPLTMVLKKKPRCG--GWVTGGQDTVALRCPSHP 129 Query: 124 -TKKLIETYGHP----LAIPSANRSGQISITNVKHILSSSIC----KEIPLIIDGGISKI 174 L+ YG P L PSAN G+IS + +H+ + ++ LI+DGG + Sbjct: 130 WAHALLAAYGGPKHRGLTAPSANSFGRISPSTAQHV-REDLGEKPAGKLDLILDGGPCEF 188 Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRS 234 G+EST++N+ ILR G + L+ + + P++ G LKSHYAP++ Sbjct: 189 GIESTMINLSGSHP-EILRHGVITRAMLEEVLDCPVPDA--GADAPRASGRLKSHYAPKT 245 Query: 235 QVRLRAIHVNPREA---------LIRFGNVPIKNI--ENAIISLNLSKTGKLKEAAFNLF 283 + L P A L G ++ + NA ++ + + +L+ Sbjct: 246 RAELLPAAQLPERATELASEGIVLAVMGPQMLRALLPANAELAAFVEAPDDVLSYGASLY 305 Query: 284 NYMKIADD--SGAS----SIAFSSIPNHGLGIAINNRLERA 318 + D G I ++ + A+N+RL+RA Sbjct: 306 EALHELDHAFEGNDCTRGRILIAAPADTPEWAAVNDRLKRA 346 >gi|85014437|ref|XP_955714.1| translation factor [Encephalitozoon cuniculi GB-M1] gi|19171408|emb|CAD27133.1| similarity to PROTEIN REQUIRED FOR NORMAL GROWTH (SUA5/YRDC/YC10/YWLC FAMILY) [Encephalitozoon cuniculi GB-M1] Length = 337 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 110/341 (32%), Positives = 166/341 (48%), Gaps = 32/341 (9%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+I+S + +A F D +A+PTETVYGLA NP A+ RL ++K+RPA NPL Sbjct: 1 MKIVSTKELDA-DFVVRFFDD--VVAVPTETVYGLAASIYNPRAVERLLKLKRRPADNPL 57 Query: 61 ICHVSDISMVKKHAS--VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 VS M+K+ + L +FWPGPLTL+ S + + + L++ R Sbjct: 58 PVAVSSYRMLKEIVKEPIPEEYRRLMDMFWPGPLTLLF--RSKDCVSSVIRSGLESVAVR 115 Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 +P ++IE G P+ +PSAN SG+ S T H++ E+ LIIDGG IGLE Sbjct: 116 MPKSKHLLEIIERLGAPVVLPSANISGRPSPTTAGHVV-EDFGDEVKLIIDGGPCPIGLE 174 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPRSQ 235 ST+V+ + ++ILRPGG+ +E ++ + + + ++ T SPG HY+PRS Sbjct: 175 STVVS-YADGGLQILRPGGITVEDIESVANCKVFVRNRANDEETELSPGQKYKHYSPRSP 233 Query: 236 VRLRAIHVNPREALI-----------RFGNVPIKNIENAII------SLNLSKTGKLKEA 278 + L ++ I R G I+ + N+ +E Sbjct: 234 LILFKGQPEEVKSGILEYIRANPDVSRIGVALHSGIDLGVPVDGRISVFNMGS--DRREV 291 Query: 279 AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 NLF ++ D S I + + G AI NRLE+AA Sbjct: 292 CRNLFEGLRSLDKIS-SVILAAGVDYGEEGDAIMNRLEKAA 331 >gi|134279501|ref|ZP_01766213.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 305] gi|134248701|gb|EBA48783.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 305] Length = 341 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 95/328 (28%), Positives = 150/328 (45%), Gaps = 24/328 (7%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + A+ A LDAG +A PTETVYGL D++NP A+ R+Y K RPA +P+I H++ S Sbjct: 10 AEAIEDAAARLDAGELVAFPTETVYGLGADAQNPAAVARIYAAKGRPANHPVIVHLAPGS 69 Query: 69 MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 P + L FWPGPLTL+L T I + + R P + Sbjct: 70 DPGYWVEALPADAKKLIDAFWPGPLTLILKR--ATHIPDAVSGGQDSVGLRCPSHPVAQA 127 Query: 127 LIETYG------HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L+ + +A PSANR G +S T +H+ + ++DGG S +G+ESTI Sbjct: 128 LLRAFDARRGGHGGVAAPSANRFGHVSPTTGQHVRDEF--GDAVHVLDGGPSDVGIESTI 185 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQVRLR 239 +++ +LRPG + + + V + + P++ G LK+HYAPR+ + L Sbjct: 186 LDLSRGFPA-LLRPGHVSPRQIADVLGVAPRLPDGSDATAPRASGTLKAHYAPRTPLALA 244 Query: 240 AIH-VNPREALIRFGNVPIK---------NIENAIISLNLSKTGKLKEAAFNLFNYMKIA 289 A + P A R P+ +A ++ A L+ ++ Sbjct: 245 AFERLEPLLAAARDTGEPVALVARASRAGAWAHAAGVHFVAAPEDPAAYARELYGLLRAL 304 Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLER 317 D + + I +P+ A+N+RL R Sbjct: 305 DRAQVARILVEKLPDTAEWTAVNDRLGR 332 >gi|329908773|ref|ZP_08274951.1| Sua5 YciO YrdC YwlC family protein [Oxalobacteraceae bacterium IMCC9480] gi|327546606|gb|EGF31576.1| Sua5 YciO YrdC YwlC family protein [Oxalobacteraceae bacterium IMCC9480] Length = 333 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 93/326 (28%), Positives = 151/326 (46%), Gaps = 14/326 (4%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 MS+ + + +A L+ G +A PTETVYGL D+ NP AI R+Y K RP+ +P+I H Sbjct: 1 MSLPHDDDILRAAGLLEQGRLVAFPTETVYGLGADAENPAAIARIYAAKGRPSNHPVIVH 60 Query: 64 VSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 ++ + S + + L FWPGPLTL+L + I + R P Sbjct: 61 LAPEADPGYWVSAIPNEAQALIDAFWPGPLTLILPRAAH--IPAAVAGGQNSIGVRCPSH 118 Query: 123 -FTKKLIETY---GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 + L+ + +A PSAN+ G +S T +H+ + LI+DGG S++G+ES Sbjct: 119 PVAQALLRAFKGGKGGIAAPSANKFGHVSPTIAQHVRDEFTDGSVDLILDGGQSEVGIES 178 Query: 179 TIVNVQ--CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQV 236 +I+++ +LRPG + L + + V G L++HYAPR+ V Sbjct: 179 SIIDLSRLDSHGPVLLRPGRITALQLAQVLGVAPAAPDAAAPRA--SGTLEAHYAPRTPV 236 Query: 237 RLRAIHVNP---REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293 + A P ++ V + + ++ + L A L+ +++ D + Sbjct: 237 AMIASADLPQILQQLAAAGRRVALLHWSDSQHAGALQLPSSPAGYAHGLYAGLRLLDMAD 296 Query: 294 ASSIAFSSIPNHGLGIAINNRLERAA 319 A I + P AIN+RL RAA Sbjct: 297 ADLILIEAPPGSADWQAINDRLRRAA 322 >gi|306820802|ref|ZP_07454427.1| Sua5/YciO/YrdC/YwlC family protein [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551192|gb|EFM39158.1| Sua5/YciO/YrdC/YwlC family protein [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 341 Score = 273 bits (698), Expect = 4e-71, Method: Composition-based stats. Identities = 94/344 (27%), Positives = 174/344 (50%), Gaps = 31/344 (9%) Query: 2 QIMSITDSN---ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58 +++ + D N A+ A E + G + PTETVYG+ ++ + + +++Y K RP+ N Sbjct: 4 EVIKLNDENYDYAINLASEHIRRGNIVIFPTETVYGIGANALDEESSKKIYMAKGRPSDN 63 Query: 59 PLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 PLI H+ ++ + K + +D + + FWPGPLT++++ + + T L T Sbjct: 64 PLIVHIENMDDLNKISKKIDERTKKIIDCFWPGPLTIIVE--KSEIVPSCITGGLNTVAV 121 Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P + +I+ G P+A PSAN SG+ SIT+ K + K + LI+ ++IG+ Sbjct: 122 RMPSNKIARDIIKKSGIPIAAPSANISGRPSITSEKFVTDEFFGK-VDLILLNESTEIGI 180 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV---DETSTPQSPGMLKSHYAPR 233 EST+++V E + ILRPG + L+ ++ ++ + + DET P+SPGM HYAP+ Sbjct: 181 ESTVIDVTGEN-IVILRPGFITKNDLENLLAEKIIFDLNISDETKAPKSPGMKYRHYAPK 239 Query: 234 SQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGK-------LK------EAAF 280 ++ L + +N + + +++N + S+ L L+ + A Sbjct: 240 CELYLMSGSIN--MQIDTAKSQIENDVKNGVKSIVLGLDNNRVYFENYLELGNSDIDVAK 297 Query: 281 NLFNYMKIADDSGASSIAF--SSIPNHGLGIAINNRLERAAAPR 322 N+F +++ D F L +I +R+++AA + Sbjct: 298 NIFTNLRMLDIMKIQKAYFLYEV--KSDLDFSILDRVKKAAGYK 339 >gi|221211360|ref|ZP_03584339.1| Sua5/YciO/YrdC family protein [Burkholderia multivorans CGD1] gi|221168721|gb|EEE01189.1| Sua5/YciO/YrdC family protein [Burkholderia multivorans CGD1] Length = 342 Score = 273 bits (698), Expect = 4e-71, Method: Composition-based stats. Identities = 89/331 (26%), Positives = 144/331 (43%), Gaps = 24/331 (7%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + A LDAG +A PTETVYGL D+ +P A+ R+Y K RPA +P+I H+ Sbjct: 11 PAQIDSAAALLDAGQLVAFPTETVYGLGGDAASPDAVARIYAAKGRPANHPVIVHLPPGG 70 Query: 69 MVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 A + + L FWPGPLTL+L I + + R P + Sbjct: 71 DPAYWAAELPADAQKLIDAFWPGPLTLILKRHP--RIPDAVSGGQDSVGLRCPSHPVAQA 128 Query: 128 IETY-------GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 + +A PSANR G +S T +H+ + ++DGG S++G+ESTI Sbjct: 129 LLAAFSARRGGHGGVAAPSANRFGHVSPTTAQHVRDEF--GDTVHVLDGGASEVGIESTI 186 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQV--- 236 +++ +LRPG + + + + + + P++ G LK+HYAPR+ + Sbjct: 187 LDLSRGFPA-LLRPGHVTPQQIADVLGRAPRLPDGSDATAPRASGTLKAHYAPRTPLALL 245 Query: 237 -------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIA 289 L A + + A ++ + A +L+ ++ Sbjct: 246 PFDALEPLLAAAQADGERVALVARASRAGRWAQADGVHFVAAPEDPQAYARDLYGMLRAL 305 Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 D + + I +P IA+N+RL RAAA Sbjct: 306 DRAQVARILVEKLPETVEWIAVNDRLGRAAA 336 >gi|145589991|ref|YP_001156588.1| Sua5/YciO/YrdC/YwlC family protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048397|gb|ABP35024.1| translation factor SUA5 [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 362 Score = 273 bits (698), Expect = 4e-71, Method: Composition-based stats. Identities = 89/342 (26%), Positives = 146/342 (42%), Gaps = 40/342 (11%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS----- 65 + +A + L G +A PTETVYGL D++NP AI++++ K RP+ +PLI H++ Sbjct: 13 VINEAVQSLRDGGLVAFPTETVYGLGADAKNPEAIKKIFSTKGRPSNHPLIVHLAAPDRF 72 Query: 66 DISM------VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 D + + + +L L FWPGPLTLV + + T T R Sbjct: 73 DQAQVDWVPVLAPWVRDLSEDALKLINAFWPGPLTLVFKKDKS--VLNELTGGQDTVAIR 130 Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 P ++L+ + + PSANR G++S T+ + +++DGG ++G+E Sbjct: 131 APAHPIAQELLRKFKGGVVAPSANRFGKVSPTSAADVRHEFEGVLDLMVLDGGDCEVGIE 190 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAISVEL----EYCVDETSTPQSPGMLKSHYAPR 233 STI+++ + +LRPG + + + + E + P+ G LK+HYAP Sbjct: 191 STIIDLSSGDRAILLRPGVITPSVILAKTGIRVYQPGEVFSETELLPKVSGSLKAHYAPT 250 Query: 234 SQVRLRAIHVNPREALIRFGNVPIKNIENAIISL----NLSKTG-------------KLK 276 + +RL A L P A+ +LS G Sbjct: 251 TPLRLYA----SGRVLDALSEFPDTKSRVAVAVWDSESSLSHDGYPLVHFEEVVIPSDSA 306 Query: 277 EAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERA 318 A L+ ++ D I F P + +RL+RA Sbjct: 307 TFASRLYRSLRDLDQQDWDLILFPEPPVGEEWDGVRDRLQRA 348 >gi|322435110|ref|YP_004217322.1| Sua5/YciO/YrdC/YwlC family protein [Acidobacterium sp. MP5ACTX9] gi|321162837|gb|ADW68542.1| Sua5/YciO/YrdC/YwlC family protein [Acidobacterium sp. MP5ACTX9] Length = 349 Score = 272 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 97/322 (30%), Positives = 156/322 (48%), Gaps = 26/322 (8%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL-- 79 G +A PTETVYGL ++ +PTA+ +++E K+RP+ +PLI H+++ M+ + A++D Sbjct: 32 GGTVAFPTETVYGLGANALDPTAVAKIFEAKQRPSWDPLIVHIANQQMLAEIATLDQQGT 91 Query: 80 SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIP 138 + L FWPGPLTL+L T I TA+ R+P +LI G P+A P Sbjct: 92 AARLIDAFWPGPLTLLLPR--TQAIPDAVTASRPLVGVRMPAHPVALELIRQTGLPIAAP 149 Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLE 198 SAN S T H+L + + I I+DGG + +GLEST+ + + + + RPG + Sbjct: 150 SANTFSHTSPTTAAHVL-ADLDGRIDAILDGGPTTVGLESTVAEITPDG-LIVYRPGAVT 207 Query: 199 IETLKRAISVELEYC--VDETSTPQ----SPGMLKSHYAPRSQVRLRAIHVNP------- 245 ++ L + + E S+P SPG+ HYAP+++V L + Sbjct: 208 LDMLNNLLGQGTAHLHIPPERSSPIESLPSPGVGIRHYAPKARVLLIDSPEDCAANWDLF 267 Query: 246 ----REALIRFGNVPIKNIENAIIS--LNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF 299 R+ + G + N + + A LF+ ++ DD + I Sbjct: 268 IENLRQVDDKLGLMLPDNWPAPEHASIFRWGSWSDKETLAHRLFSGLRALDDEHVTHIIC 327 Query: 300 SSIPNHGLGIAINNRLERAAAP 321 G+G AI +RL++AA P Sbjct: 328 PLPSPEGMGAAIRDRLQKAAKP 349 >gi|310819587|ref|YP_003951945.1| sua5/ycio/yrdc/ywlc family protein [Stigmatella aurantiaca DW4/3-1] gi|309392659|gb|ADO70118.1| Sua5/YciO/YrdC/YwlC family protein [Stigmatella aurantiaca DW4/3-1] Length = 313 Score = 272 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 112/316 (35%), Positives = 160/316 (50%), Gaps = 14/316 (4%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-S 75 E L +G IA+PTETVYGLA ++ + A+RR++ IK RPA +PLI H+ + + A Sbjct: 2 EILRSGGVIALPTETVYGLAANAEDELAVRRVFAIKGRPATHPLIVHLPQAEALPRWARD 61 Query: 76 VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134 + P + LA FWPGPLTLVL T+ T T RVP ++ G Sbjct: 62 IPPEAWKLAAAFWPGPLTLVLRR--TSRATDAVTGGQDTVALRVPNHPLALAVLSALGGG 119 Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194 LA PSANR G++S T H+ + ++ LI+DGG +G+ESTIV++ ILRP Sbjct: 120 LAAPSANRFGRVSPTTAGHV-REDLGSDVDLILDGGPCTVGVESTIVDLSSGDPA-ILRP 177 Query: 195 GGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI------HVNPREA 248 GGL E L+ + + V TS+ + G L SHYAPR+ V L + R Sbjct: 178 GGLAAEELEHVLGRPVP--VRATSSVRVSGSLASHYAPRAGVTLVEVPEAAARAQALRGQ 235 Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLG 308 +R G + ++ AA +L+ ++ AD +G + GLG Sbjct: 236 GLRVGVLGPASLALPPGVPRFDMPEDPAGAAHDLYLRLREADLAGLDLLLACLPSARGLG 295 Query: 309 IAINNRLERAAAPRNQ 324 +A+ +RL RAAAPR Sbjct: 296 LAVRDRLARAAAPRTS 311 >gi|91785085|ref|YP_560291.1| translation factor SUA5 [Burkholderia xenovorans LB400] gi|91689039|gb|ABE32239.1| translation factor SUA5 [Burkholderia xenovorans LB400] Length = 346 Score = 272 bits (697), Expect = 5e-71, Method: Composition-based stats. Identities = 96/331 (29%), Positives = 153/331 (46%), Gaps = 25/331 (7%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + A LDAG +A PTETVYGL D+ NP A+ R+Y K RPA +P+I H++ Sbjct: 16 AAQIEHAAALLDAGELVAFPTETVYGLGGDAENPDAVARIYAAKGRPANHPVIVHLAPQG 75 Query: 69 MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 P + L FWPGPLTL+L + I + + R P + Sbjct: 76 DPNYWVEHLPADAQRLIDAFWPGPLTLILKRAA--RIPAAVSGGQDSVGLRCPSHPVAQA 133 Query: 127 LIETY------GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L+E + +A PSANR G +S T +H+ + ++DGG S +G+ESTI Sbjct: 134 LLEAFSALRSGHGGVAAPSANRFGHVSPTTAQHVRDEF--GDTIHVLDGGASDVGIESTI 191 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQV--- 236 +++ +LRPG + + + + + + P++ G LK+HYAP + + Sbjct: 192 LDLSRGFPA-LLRPGRVTPQDIADVLGEAPRLPDGSDATAPRASGTLKAHYAPSTPLALL 250 Query: 237 -------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIA 289 L A HV+ R AL+ + +A ++ A L+ ++ Sbjct: 251 PFGALETLLAARHVDERVALVA-RVSRAGHWADAEGVHFVAAPEDPHVYARELYGLLRAL 309 Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 D + + I +P+ IA+N+RL RAAA Sbjct: 310 DRANVTRILIEKLPDTIEWIAVNDRLGRAAA 340 >gi|187925244|ref|YP_001896886.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia phytofirmans PsJN] gi|187716438|gb|ACD17662.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia phytofirmans PsJN] Length = 346 Score = 272 bits (697), Expect = 5e-71, Method: Composition-based stats. Identities = 90/330 (27%), Positives = 147/330 (44%), Gaps = 23/330 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + A LDAG +A PTETVYGL D+ +P A+ R+Y K RPA +P+I H++ Sbjct: 16 AEQIEHAAALLDAGELVAFPTETVYGLGGDAESPDAVARIYAAKGRPANHPVIVHLAPQG 75 Query: 69 MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + + L FWPGPLTL+L + I + + R P + Sbjct: 76 DPNYWVERLPAEAQRLIDAFWPGPLTLILKRAA--RIPAAVSGGQDSVGLRCPSHPVAQA 133 Query: 127 LIETYG------HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L++ + +A PSANR G +S T +H+ I ++DGG S +G+ESTI Sbjct: 134 LLDAFNALRGGHGGVAAPSANRFGHVSPTTAQHV-RDEFGGAI-HVLDGGASDVGIESTI 191 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQV--- 236 +++ +LRPG + + + + + + P++ G LK+HYAPR+ + Sbjct: 192 LDLSRGFPA-LLRPGRVTPQDIADVLGEAPRLPDGSDATAPRASGTLKAHYAPRTPLALL 250 Query: 237 ------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD 290 L A + +A ++ A L+ ++ D Sbjct: 251 PFVALEPLLAARQADERVALVARASRAGRWADAEGVHFIAAPEDPHVYARELYGLLRALD 310 Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + + I +P+ IA+N+RL RAAA Sbjct: 311 RANVTRILIEKLPDTIEWIAVNDRLGRAAA 340 >gi|167568960|ref|ZP_02361834.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia oklahomensis C6786] Length = 341 Score = 272 bits (696), Expect = 6e-71, Method: Composition-based stats. Identities = 96/331 (29%), Positives = 157/331 (47%), Gaps = 24/331 (7%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A LDAG +A PTETVYGL D+++P A+ R+Y K RPA +P+I H++ S Sbjct: 10 AAQIDEAAALLDAGELVAFPTETVYGLGGDAQSPAAVARIYAAKGRPANHPVIVHLAPGS 69 Query: 69 MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 P + L FWPGPLTL+L + I + ++ R P + Sbjct: 70 DPGYWVDELPADAKKLIDAFWPGPLTLILKRAAH--IPDAVSGGQESVGLRCPSHPVAQA 127 Query: 127 LIETYG------HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L+ + +A PSANR G +S T +H+ + ++DGG S +G+ESTI Sbjct: 128 LLRAFDARRGGHGGVAAPSANRFGHVSPTTAQHV-RDEFGDSV-HVLDGGASDVGIESTI 185 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQV--- 236 +++ +LRPG + + + + V + + P++ G LK+HYAPR+ + Sbjct: 186 LDLSRGFPA-LLRPGRVTPQQIADVLGVAPRLPDGGDATAPRASGTLKAHYAPRTPLALA 244 Query: 237 ---RLRAIHVNPREALIRFGNVPIKNIENAIISLN----LSKTGKLKEAAFNLFNYMKIA 289 RL + R+A R V + A + ++ A L+ ++ Sbjct: 245 PFERLERLLSAARDAGERIALVARASRAGAWAHTDGVHFVAAPEDPLVYARELYGLLRAL 304 Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 D + + I +P+ IA+N+RL RAAA Sbjct: 305 DRAQVARILVEKLPDTAEWIAVNDRLGRAAA 335 >gi|309780644|ref|ZP_07675386.1| Sua5/YciO/YrdC/YwlC family protein [Ralstonia sp. 5_7_47FAA] gi|308920567|gb|EFP66222.1| Sua5/YciO/YrdC/YwlC family protein [Ralstonia sp. 5_7_47FAA] Length = 337 Score = 271 bits (695), Expect = 7e-71, Method: Composition-based stats. Identities = 92/329 (27%), Positives = 152/329 (46%), Gaps = 18/329 (5%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 ++ + L +A L+AG +A PTETVYGL D+ NP AI ++Y K RP+ +P+I H Sbjct: 9 YTMPSAERLDEAARRLEAGELVAFPTETVYGLGADAENPQAIAKIYAAKGRPSNHPVIVH 68 Query: 64 VSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 V D + + P ++L L + FWPGPLTL+L I + R P Sbjct: 69 VVDGADISYWTDEVPGIALQLIEAFWPGPLTLILKRAPH--IPAAVAGGQDSIGLRCPSH 126 Query: 123 FTKKLI----ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 + + + +A PSAN+ GQ+S T +H+ + +++G +G+ES Sbjct: 127 PVAQALLSRFKRGRGGIAAPSANKFGQVSPTTAQHVRDEF--GDAVFVLEGDGVDVGIES 184 Query: 179 TIVNVQCEKK---VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQ 235 TI+++ + +LRPG + + ++R EL D + S G LK+HYAPR+ Sbjct: 185 TIIDLSRLDQGIGPVLLRPGAITPDDIERVTG-ELPAAPDAAAPRAS-GTLKAHYAPRTP 242 Query: 236 VRLRAIHVNPREALIRFGNVPIKNIENAIISLNLS----KTGKLKEAAFNLFNYMKIADD 291 + L + P + I + + + A L+ ++ D Sbjct: 243 LYLLSAADVPARLAALPADKRIVWLGTPVALRDGCDQRVAPATPGAYANALYALLRELDR 302 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320 G +I ++ + A+N+RL RAAA Sbjct: 303 GGYDAIWVETLADTPAWAAVNDRLRRAAA 331 >gi|164662685|ref|XP_001732464.1| hypothetical protein MGL_0239 [Malassezia globosa CBS 7966] gi|159106367|gb|EDP45250.1| hypothetical protein MGL_0239 [Malassezia globosa CBS 7966] Length = 471 Score = 271 bits (695), Expect = 7e-71, Method: Composition-based stats. Identities = 111/403 (27%), Positives = 162/403 (40%), Gaps = 93/403 (23%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 ++L KA L +G +A PTETVYGL + A R+Y K RPA NPLI HVSD M Sbjct: 53 SSLEKAASHLRSGQLVAFPTETVYGLGACALRTDAAERIYHAKNRPADNPLIVHVSDRRM 112 Query: 70 VKKH----ASVDPLSLHLAKLFWPGPLTLVLDL----LSTTDIHPLSTANLKTACFRVPC 121 + K + L K FWPGPLTL+ + I T T R+P Sbjct: 113 LSKLLPSKYPYNAACEALMKAFWPGPLTLLFPVGLDDQGLPRIPSTVTCGQSTVGLRMPS 172 Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKE--IPLIIDGGISKIGLES 178 + LI G P+A PSAN SG+ S T H+ + + + I+DGG IGLES Sbjct: 173 HPIARALISLAGVPVAAPSANASGRPSPTTAGHVFTD-LGPRHVLSYIVDGGECSIGLES 231 Query: 179 TIVNV-QCEKKVRILRPGGLEIETLKRAI-------------SVELEYCVDETSTPQSPG 224 T+V+ +VR+LRPGG+ +E + +A+ +L + + P +PG Sbjct: 232 TVVDATTTPGEVRVLRPGGISVEQIAQALEQAGLSSLSLRVYGRDLARSAQQEAAPTTPG 291 Query: 225 MLKSHYAPRSQVRLRAIHVNP--------------REALIRFGNVPIKNIENAIISLNL- 269 M HY+P ++V L I R + + + ++ + L+L Sbjct: 292 MKYRHYSPEARVLLVRIDDGEHPTVHELLRDVAASRAQAEQEARIGLLCAHDSPLILSLP 351 Query: 270 ----------------SKTGKLKE--------------------------AAF-NLFNYM 286 S E AA LF+ + Sbjct: 352 DSALTRWAADATHASSSSFTDKAESRLSPVVHVNGMKLCLYSLGRRDTPSAAAQRLFDGL 411 Query: 287 KIADDS---------GASSIAFSSIPNHGLGIAINNRLERAAA 320 + D +I + G+G+AI NRL +AA+ Sbjct: 412 RTLDACVPWCDGKPGACDAIITDVVDESGVGLAIMNRLRKAAS 454 >gi|225874536|ref|YP_002755995.1| Sua5/YciO/YrdC/YwlC family protein [Acidobacterium capsulatum ATCC 51196] gi|225791509|gb|ACO31599.1| Sua5/YciO/YrdC/YwlC family protein [Acidobacterium capsulatum ATCC 51196] Length = 343 Score = 271 bits (695), Expect = 8e-71, Method: Composition-based stats. Identities = 105/333 (31%), Positives = 169/333 (50%), Gaps = 28/333 (8%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 ++ +A E L AG +A PTETVYGL ++ + A+ ++E K+RPA +PLI HVS + M+ Sbjct: 11 SIARAAEILRAGGTVAFPTETVYGLGANALDAAAVAGIFEAKQRPAWDPLIVHVSSLEML 70 Query: 71 KKHASVD-PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + A + LA++FWPGPLT++L + ++ TA R+P + LI Sbjct: 71 SQVADELCDNAKRLAEVFWPGPLTMLLPR--SANVPDAVTAGRPLVGVRMPSHPIAQALI 128 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E G P+A PSAN G+IS T +H+ + + I I+DGG + GLEST++ + + Sbjct: 129 EAAGVPVAAPSANSFGRISPTTAQHV-AEDLEGRIDAILDGGETIHGLESTVIEPRADHS 187 Query: 189 VRILRPGGLEIETLKRAISVELEY--CVDETSTPQ---SPGMLKSHYAPRSQVRLRAIHV 243 + I RPG + + L+ + +EY E S P+ SPG+ HYAPR++++L Sbjct: 188 I-IYRPGVVTAQQLRAVCAGSVEYYEPAHEKSAPESLPSPGVGLRHYAPRARLQLVEGAG 246 Query: 244 NPREALI------------RFGNVPIKNIENAII-----SLNLSKTGKLKEAAFNLFNYM 286 + + R G + ++ + A+I + +E A LF + Sbjct: 247 EAQMTALRETVLDAERIGERVGVMLPESFQTALIGCAAHVYRWGRWEDKEELAQRLFAGL 306 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 + D G + I G+G AI +RL +AA Sbjct: 307 RQLDAEGLTLIVCPLPEAKGIGRAICDRLGKAA 339 >gi|160937847|ref|ZP_02085206.1| hypothetical protein CLOBOL_02739 [Clostridium bolteae ATCC BAA-613] gi|158439286|gb|EDP17039.1| hypothetical protein CLOBOL_02739 [Clostridium bolteae ATCC BAA-613] Length = 412 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 85/239 (35%), Positives = 124/239 (51%), Gaps = 11/239 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 L++A L +G +A PTETVYGL ++ + A R++Y K RP+ NPLI HVS + Sbjct: 16 DEELKEAASILRSGGLVAFPTETVYGLGGNALDEDAARKIYAAKGRPSDNPLIAHVSCVE 75 Query: 69 MVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126 V P + L + FWPGPLT++ + + +T L T R+P + Sbjct: 76 EVAPLVKEIPEAGRKLMEAFWPGPLTMIFP--KSEKVPYGTTGGLDTVAIRMPDDPVANR 133 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LI G P+A PSAN SG+ S T H+ + I +IIDGG IG+ESTIV+V Sbjct: 134 LIALAGVPVAAPSANTSGRPSPTTADHVW-QDMNGRIEMIIDGGPVGIGVESTIVDVSSA 192 Query: 187 KKVRILRPGGLEIETLKRAIS-VELEYCV----DETSTPQSPGMLKSHYAPRSQVRLRA 240 +LRPG + +E L + V ++ + P++PGM HYAP++ + L Sbjct: 193 VP-SVLRPGAITMEMLAEVLGEVSVDPAILGPLSADVRPKAPGMKYKHYAPKADLTLVE 250 Score = 91.3 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 3/90 (3%) Query: 236 VRLRAIHVNPREALIRFGNVPIKNIENAII---SLNLSKTGKLKEAAFNLFNYMKIADDS 292 ++R + EA + G + ++ A NL+ ++ DD Sbjct: 319 CKVRELSREKIEAGYKVGVICTDESRGCYTDGEVRSIGARKSQASVAHNLYALLREFDDL 378 Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAAPR 322 G I S P LG AI NRL +AA + Sbjct: 379 GVDYIFSESFPKDHLGQAIMNRLSKAAGYK 408 >gi|332285295|ref|YP_004417206.1| hypothetical protein PT7_2042 [Pusillimonas sp. T7-7] gi|330429248|gb|AEC20582.1| hypothetical protein PT7_2042 [Pusillimonas sp. T7-7] Length = 346 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 96/338 (28%), Positives = 147/338 (43%), Gaps = 32/338 (9%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 L A L G +A PTETVYGL D+ NP A+ +Y K RPA +P+I HV+ + Sbjct: 12 EQQLSAAARRLAQGGLVAFPTETVYGLGADAENPQALASIYAAKGRPANHPVIVHVAPEA 71 Query: 69 MVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + ASV + L + FWPGPLTL+L I + + R P + Sbjct: 72 DLGYWAASVPAEARALIQAFWPGPLTLILPRAPH--IPAAVSGGQDSIGLRCPSHPVAQA 129 Query: 127 LIETY-------GHPLAIPSANRSGQISITNVKHILSS--SICKEIPLIIDGGISKIGLE 177 L+ + +A PSAN+ GQ+S T+ H+ + + + L+++GG S++G+E Sbjct: 130 LLREFARQKPNGQGGVAAPSANKFGQVSPTHAAHVRTEFPELGTDQLLVLEGGPSEVGIE 189 Query: 178 STIVNVQ---CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRS 234 STIV+V +LRPG + L + + PQ G LK+HYAP + Sbjct: 190 STIVDVSRLGLGVGPVLLRPGHISAAQLAEVLGAP--PARPDQDAPQVSGSLKAHYAPHT 247 Query: 235 QVRLRAIHVNPREALIRFGNVPIKNIENAIISLN------------LSKTGKLKEAAFNL 282 +++ + A N A++ N L A L Sbjct: 248 PLQVLPLDQLLDAARQSLPNNLSG--RTAVVVFNPELLNTMSDVDTLKCNADPAVYAREL 305 Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + ++ D+ G I P A+N+R+ RAAA Sbjct: 306 YALLRRLDEQGYDRILMEQPPRTATWQAVNDRIGRAAA 343 >gi|297623264|ref|YP_003704698.1| Sua5/YciO/YrdC/YwlC family protein [Truepera radiovictrix DSM 17093] gi|297164444|gb|ADI14155.1| Sua5/YciO/YrdC/YwlC family protein [Truepera radiovictrix DSM 17093] Length = 356 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 109/352 (30%), Positives = 164/352 (46%), Gaps = 35/352 (9%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M L +A E L G +A PTETVYGL D+RN A+R ++ IK RPA +P+ Sbjct: 1 MARTHPVSPQHLTEAAEALRQGRLVAFPTETVYGLGADARNEAAVREIFRIKGRPADHPV 60 Query: 61 ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I H+ + ++ A +V L+ LA+ FWPGPLTLVL + + T T RV Sbjct: 61 IVHLPSAAHLEAWAVAVPELAYALAERFWPGPLTLVLQRHPS--VLDAVTGAQATVGLRV 118 Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P L++ +G +A PSANR G+IS T +H+ + + + L++DGG +GLES Sbjct: 119 PGHPVALALLDAFGGGVAAPSANRFGRISPTTAEHV-RAELGDAV-LVLDGGPCAVGLES 176 Query: 179 TIVNVQ----CEKKVRILRPGGL---EIETLKRAISVELEYCVDETS-------TPQSPG 224 TI++V E R+LRPGG+ ++ + RA+ +E+E V + TP+ G Sbjct: 177 TILDVSRVGDAEGAPRLLRPGGIALGALQEVARALGLEIEDAVQPGAGTRRGAPTPRVSG 236 Query: 225 MLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSK------------- 271 L SHYAP + RL A E A+++ Sbjct: 237 SLASHYAPATPARLTEDAAADLAAYWARHPRAGGVGEVAVLARRPQPPLGAAARALRRWR 296 Query: 272 --TGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 + L+ ++ D G + + + P A+ +RL RA AP Sbjct: 297 VLPETPADYGRLLYAALRELDALGCALLLVEAPPPTPEWAAVADRLRRATAP 348 >gi|319778521|ref|YP_004129434.1| Sua5 subfamily-like protein [Taylorella equigenitalis MCE9] gi|317108545|gb|ADU91291.1| Sua5 subfamily-like protein [Taylorella equigenitalis MCE9] Length = 330 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 98/334 (29%), Positives = 151/334 (45%), Gaps = 25/334 (7%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 MQ T +++A +L G +A+PTETVYGL D+ N A+ R+Y +K RP +PL Sbjct: 1 MQFSDTT----IKQAALYLLDGGLVALPTETVYGLGADALNKDAVERIYSVKGRPTNHPL 56 Query: 61 ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I HV + + + + L K FWPGPLTLVL + ++ T T R Sbjct: 57 IVHVHKDADLNFWCSEIPDDAKKLIKAFWPGPLTLVLP--KSQNVPDYITGGQSTVAIRS 114 Query: 120 PCG-FTKKLIETY-----GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173 P + ++ + + PSAN G +S T +H+ I IDGG S+ Sbjct: 115 PNHPIAQAVLLEFSKLKNNAGIVAPSANLFGHVSPTKNEHVKDEFPSDNI-YFIDGGSSE 173 Query: 174 IGLESTIVNVQCEKK-VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAP 232 +G+ESTI+++ K ILRPG + + + + + VE + + S P G LKSHYAP Sbjct: 174 VGIESTILDLSRPKIGPVILRPGHITKKDIYKVLGVEPKD--KDISAPVVSGSLKSHYAP 231 Query: 233 RSQVR-LRAIHVNPREALIRFGNVPIKNIEN------AIISLNLSKTGKL-KEAAFNLFN 284 + + L I ++ V I N I + K L E A ++ Sbjct: 232 KIPIYPLDDISNLDFINHLKHKKVAIIYHSNNHYDILNEIDVIYYKLPSLSTEYASKIYE 291 Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERA 318 ++ + I S+P A+ +R+ RA Sbjct: 292 TLRKIESQNMDLILLESLPLDAEWDAVRDRMNRA 325 >gi|89899013|ref|YP_521484.1| Sua5/YciO/YrdC/YwlC [Rhodoferax ferrireducens T118] gi|89343750|gb|ABD67953.1| translation factor SUA5 [Rhodoferax ferrireducens T118] Length = 389 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 96/380 (25%), Positives = 152/380 (40%), Gaps = 67/380 (17%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 I+ ++++ + + AG + +PTETVYGLA D+ N TA+ +++ K RPA +PLI Sbjct: 2 ILDGFAASSIALGAQRIRAGGLLGLPTETVYGLAADAENDTAVAQIFTAKGRPADHPLIV 61 Query: 63 HVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 HV D V A V + L + FWPGPLTL+L + + T R P Sbjct: 62 HVRDAVCVGHFAAQVPDFADRLMQAFWPGPLTLILPRRPG--VASAAAGGQDTIGLRCPS 119 Query: 122 GFTKKLIETY----------------------------GHPLAIPSANRSGQISITNVKH 153 +++ +A PSAN+ G++S T H Sbjct: 120 HPVAQMLLQALLQNGGQNPTHSESAKPQAKELASQPHGVWGIAAPSANQFGRVSPTTAAH 179 Query: 154 ILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL--- 210 + S LI+DGG +G+ESTI++ + V +LRPG + E ++ A +++ Sbjct: 180 VQSEF--GPDLLILDGGACTVGIESTIIDCTRGQPV-LLRPGAITREQVQAACGLKVLLK 236 Query: 211 -EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAIIS--- 266 E D P++ G L+SHYAP++ VRL + + Sbjct: 237 DELATDAAPAPKASGTLESHYAPKATVRLMDAAALRAALARWVADEAAMGPAAGVAVATR 296 Query: 267 --------------------------LNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300 L+ AA LF ++ D G I Sbjct: 297 ARAQAPALPTIAVYARSVHPNQSSRLLSQHMPADATAAARELFAVLRRLDAQGVQQIWIE 356 Query: 301 SIPNHGLGIAINNRLERAAA 320 + P + +RL+RAA+ Sbjct: 357 TPPAGAEWDGVRDRLQRAAS 376 >gi|219847348|ref|YP_002461781.1| Sua5/YciO/YrdC/YwlC family protein [Chloroflexus aggregans DSM 9485] gi|219541607|gb|ACL23345.1| Sua5/YciO/YrdC/YwlC family protein [Chloroflexus aggregans DSM 9485] Length = 345 Score = 270 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 97/324 (29%), Positives = 145/324 (44%), Gaps = 26/324 (8%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 T A+ A E L G +A PTETVYGL + + TA+ ++ K RP +PLI H++ Sbjct: 8 TSPQAIAVAAELLRRGELVAFPTETVYGLGGHALDQTAVAAIFAAKGRPTSDPLIVHLAT 67 Query: 67 ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 + + + A + PL+ LA FWPGPLTL++ + TA +T RVP Sbjct: 68 AADLPRVAVDIPPLATELATHFWPGPLTLIVPRHPH--VPRAVTAGRETVAVRVPSHPVA 125 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 L+ G P+A PSANR G S T H+L + + I IIDGG + IG+EST+++ Sbjct: 126 HALLVAAGVPVAAPSANRFGHTSPTTADHVL-ADLDGRIAAIIDGGPTPIGIESTVLDCT 184 Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQ---SPGMLKSHYAPRSQVRLR-- 239 +LRPGG+ +E L Y + SPG+L HYAP ++ L Sbjct: 185 TN-PPTLLRPGGISLEALTAVAGPIQTYHRTTNKSETGFVSPGLLDRHYAPDHELWLFSG 243 Query: 240 ---------------AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFN 284 A+ R L+ + + + +L + + A L+ Sbjct: 244 PLPDVLHRLRIETETALAAGLRIGLLLPAEDLMLFDDLPVEMESLGPATEPETMAQRLYA 303 Query: 285 YMKIADDSGASSIAFSSIPNHGLG 308 ++ DD I + GLG Sbjct: 304 ALRALDDRHLDRIFTRDLDEAGLG 327 >gi|289450238|ref|YP_003475652.1| Sua5/YciO/YrdC/YwlC family protein [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184785|gb|ADC91210.1| Sua5/YciO/YrdC/YwlC family protein [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 403 Score = 270 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 102/378 (26%), Positives = 160/378 (42%), Gaps = 75/378 (19%) Query: 21 AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPL 79 G + +PTETVYGL V++ A+ +Y +K RP+ NPLI HV+D + + PL Sbjct: 24 EGKLVVMPTETVYGLGVNALMGDAVPEVYRVKGRPSDNPLIVHVADFVDIPPLVQKISPL 83 Query: 80 SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIP 138 + + F PGPLT++L + I + L T R+P LI+ G P+A P Sbjct: 84 ADFIMHRFMPGPLTVILP--KSDLIPLQVSGGLATVGIRMPSHPIAHALIKLAGVPVAAP 141 Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLE 198 SAN SG+ S+TN L + ++P I+DGG S +GLEST++++ + RILRPG ++ Sbjct: 142 SANLSGKPSLTNGPDCL-EELSGKVPFIVDGGASDVGLESTVLDLTSDMP-RILRPGKID 199 Query: 199 IETLKRA-----------------ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241 ++ +S+ + P +PGM HYAP+++VR+ Sbjct: 200 QAAVQAVCDEFKGKVMDGGQSAPMVSLGYLRRLAANEKPAAPGMKYRHYAPQAEVRIVNA 259 Query: 242 HVNPREALIRFG--------------NVPIKNIENAIIS--------------------- 266 ++ R + + A+ S Sbjct: 260 DFATGSSVARAMGEAYAACLKEYPAEEIGVFAAREAVASCLNVAATSAAATSTAATADAA 319 Query: 267 --------------LNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAIN 312 L + G + AA LF + D I +P G+G A Sbjct: 320 ADAVSAVARVGLPLLAYGEYGDIAAAAHGLFTAFRALDRRKVKVILTHELPQDGIGAAYM 379 Query: 313 NRLERAAAPRNQSQRIVP 330 NRL +AAA ++Q + P Sbjct: 380 NRLRKAAA---KAQALPP 394 >gi|167769909|ref|ZP_02441962.1| hypothetical protein ANACOL_01250 [Anaerotruncus colihominis DSM 17241] gi|167667900|gb|EDS12030.1| hypothetical protein ANACOL_01250 [Anaerotruncus colihominis DSM 17241] Length = 342 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 99/313 (31%), Positives = 153/313 (48%), Gaps = 18/313 (5%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS- 80 G + IPTETVYGLA ++ +P A +Y K RP NPLI H++ + + P + Sbjct: 28 GKLVVIPTETVYGLAANALDPAAAAAIYTAKGRPCDNPLIVHIASLDELPPLVKAVPDAL 87 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPS 139 LA FWPGP+T++L+ + + +T L T R+P + LI G PLA PS Sbjct: 88 YRLADRFWPGPMTVILE--KSDLVPSATTGGLDTVAVRMPAHPAARALIRRAGVPLAAPS 145 Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEI 199 AN SG S T +H + + + I+DGG ++GLEST++ + CE+ +ILRPG + + Sbjct: 146 ANLSGSPSPTCARHCI-DDLDGRVDAIVDGGPCEVGLESTVLTL-CEQPPQILRPGAVTL 203 Query: 200 ETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALI---- 250 E ++ + + + + SPGM HYAP+++V L P + Sbjct: 204 EMARQVLADIELGPGVFERLPDGVRAASPGMKYKHYAPKARVILVHAARGPFANFLASRK 263 Query: 251 -RFGNVPIKNIENAI--ISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307 RFG + + E A+ + A LF+ ++ D +G + G+ Sbjct: 264 GRFGALCLAGDEQALSCPCIVYGAQDDAASQAHGLFDALRQIDRAGLPLVYARVDGAGGV 323 Query: 308 GIAINNRLERAAA 320 G A+ NRL RAA Sbjct: 324 GQAVYNRLLRAAG 336 >gi|118594847|ref|ZP_01552194.1| Putative translation factor [Methylophilales bacterium HTCC2181] gi|118440625|gb|EAV47252.1| Putative translation factor [Methylophilales bacterium HTCC2181] Length = 324 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 91/325 (28%), Positives = 169/325 (52%), Gaps = 15/325 (4%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 ++ TDS+ + +A L G + +PTETVYGLA D+ + +AI+ ++ +KKRP +PLI Sbjct: 5 LLKATDSDCINQAVTLLKDGKLVGLPTETVYGLAADATHTSAIQEIFRVKKRPPNHPLIL 64 Query: 63 HVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 H+ D+S + + A ++ ++ LAK F PG L+++L + + T C R+P Sbjct: 65 HLPDLSDLSQWAINIPDITYALAKQFMPGSLSVLLHKNPS--VSNAITGGSNKICIRIPH 122 Query: 122 GF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 T K+IE G P+ PSAN G+IS T+ +H++ + EI ++DGG ++G+ESTI Sbjct: 123 HETTLKIIERLGSPIVAPSANIFGRISPTSAEHVM-QDLFGEIDAVVDGGECRVGIESTI 181 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 V++ +LRPGG+ + L++A+ ++ ++ G L +HY P +++ Sbjct: 182 VDLTTPIP-TLLRPGGVNLFALEKALHSKIFIPDSVNTSI--SGNLVNHYQPTTKLTPIH 238 Query: 241 IHVNPREALIRFGN------VPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGA 294 L+ + + +++ I+ L + + + + +++ D +G Sbjct: 239 KEDIMTHQLMGASDSTTTIFLLFEDLHELQINKYLMPM-DVHKYSQLFYGVLRVLDKAGF 297 Query: 295 SSIAFSSIPNHGLGIAINNRLERAA 319 I P +AIN+R+ +A+ Sbjct: 298 KEIFIQIPPKSPEWLAINDRILKAS 322 >gi|163857906|ref|YP_001632204.1| putative translation factor [Bordetella petrii DSM 12804] gi|163261634|emb|CAP43936.1| putative translation factor [Bordetella petrii] Length = 352 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 92/329 (27%), Positives = 155/329 (47%), Gaps = 32/329 (9%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-S 75 E L AG +A PTETVYGL D++NP A+ R+Y K RP+ +P+I HV+ + + + Sbjct: 19 ERLLAGELVAFPTETVYGLGADAQNPEAVARIYAAKGRPSNHPVIVHVAPGADLGYWVRN 78 Query: 76 VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY--G 132 + P + L FWPGPLTL+L + + R P + L+ + G Sbjct: 79 ISPAARQLIDAFWPGPLTLILPRAPHAGAA--VSGGQDSIGLRCPSHPVAQALLRAFAAG 136 Query: 133 HP-----LAIPSANRSGQISITNVKHILSSSICKEIPL--IIDGGISKIGLESTIVNVQC 185 P +A PSAN+ G +S T +H+ + ++DGG +++G+ESTIV++ Sbjct: 137 KPGGHGGVAAPSANKFGHVSPTRAEHVRGEFPQEVAQGMPVLDGGPAQVGIESTIVDLSR 196 Query: 186 EKK---VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242 ++ +LRPG + ++ + ++ + + + P++ G LK+HYAP + + L Sbjct: 197 LEQGVGPVLLRPGHVTPAQIEAVL--DMPVAMPDAAAPRASGTLKAHYAPHTPLELMTTQ 254 Query: 243 VNP-----------REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291 R A++ FG P + G+ A L+ ++ D Sbjct: 255 HLMDAARGRGLPAGRVAIVAFGAAPAELDARVAWRQVPDDAGR---YAQALYTMLRDLDG 311 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320 G + I + P A+N+R+ RAAA Sbjct: 312 GGYARILVQAPPADDAWRAVNDRIGRAAA 340 >gi|297539832|ref|YP_003675601.1| Sua5/YciO/YrdC/YwlC family protein [Methylotenera sp. 301] gi|297259179|gb|ADI31024.1| Sua5/YciO/YrdC/YwlC family protein [Methylotenera sp. 301] Length = 327 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 98/322 (30%), Positives = 159/322 (49%), Gaps = 18/322 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 +L +A L G +AIPTETVYGLA D+ N A+++++ K+RPA +PLI H++DIS V Sbjct: 4 SLDEAARRLQNGEVVAIPTETVYGLAADATNDIALQKIFTTKQRPADHPLIVHIADISQV 63 Query: 71 KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + +++ LAK FWPG LTL+L + + + T RVP +L+ Sbjct: 64 TEWVTDFPEVAVELAKAFWPGALTLILP--AKHHVSRVVRGGEPTIALRVPNHPIALELL 121 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 + +A PSAN Q+S T H+ + ++P ++DGG ++G+ESTIV+V + + Sbjct: 122 KLSKLSVAAPSANLFTQLSPTTATHV-EVGLGADVP-VLDGGACQVGIESTIVSVAADGQ 179 Query: 189 VRILRPGGLEIETLKRAIS------VELEYCVDETSTPQSPGMLKSHYAPRSQVRL---R 239 ++LRPG + + + VE + ++TP++PG HY+PR+ + L R Sbjct: 180 WQLLRPGMISEADIAKVAGRPQRKVVESDKAAATSTTPKAPGQHALHYSPRTPLFLFKDR 239 Query: 240 AIHVNPREALIRFGNVPIK---NIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296 A + E LI G + + + E A L+ + D S Sbjct: 240 AALIVTSEQLIAAGKTCAALLIGDGDMPQCHVAHLSNQPAEVAEQLYGALHQLDALKVDS 299 Query: 297 IAFSSIPNHGLGIAINNRLERA 318 + P+ A+ +RL RA Sbjct: 300 LLVELPPDTSPWAAVLDRLSRA 321 >gi|296135279|ref|YP_003642521.1| Sua5/YciO/YrdC/YwlC family protein [Thiomonas intermedia K12] gi|295795401|gb|ADG30191.1| Sua5/YciO/YrdC/YwlC family protein [Thiomonas intermedia K12] Length = 334 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 98/322 (30%), Positives = 153/322 (47%), Gaps = 17/322 (5%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A L+AG + +PTETVYGLA D+ N A+ ++Y K RPA +P+I H+ + Sbjct: 12 PREIIEAVRRLEAGELVGLPTETVYGLAADAENAQAVAKIYAAKGRPADHPVIVHIHRAA 71 Query: 69 MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 + AS P + LA FWPGPLTL+L + T R P + Sbjct: 72 DLGHWASDVPEPARKLAAAFWPGPLTLILPRKPG--VADACAGGQSTIGLRCPSHPVAQA 129 Query: 128 IET----YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + LA PSANR G+IS T H+ + + ++ L++DGG +G+ESTIV+ Sbjct: 130 VLAIFKGGQGGLAAPSANRFGRISPTTAAHV-HAELGDDL-LVLDGGACAVGIESTIVDC 187 Query: 184 QCEKKVRILRPGGLEIETLKRAISV-ELEYCVDETSTPQSPGMLKSHYAPRSQV------ 236 + RILRPG L+ + + + V E + S P+ G+L +HYAPR+ + Sbjct: 188 T-AQPPRILRPGQLQAADIAQTLGVAEADLLRPAESAPRVAGVLPAHYAPRTPLQWCSRE 246 Query: 237 RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296 ++ A +A R G + A S ++ A L+ ++ D +G Sbjct: 247 QINARWEIDADAGRRIGVLAFPPQPRAPHSSWVTLPADPAAYAQQLYAVLRKLDAAGLEE 306 Query: 297 IAFSSIPNHGLGIAINNRLERA 318 I +P +A+ +RL RA Sbjct: 307 ICVEVLPPSPAWLALRDRLTRA 328 >gi|111115564|ref|YP_710182.1| hypothetical protein BAPKO_0778 [Borrelia afzelii PKo] gi|216263452|ref|ZP_03435447.1| putative Sua5/YciO/YrdC/YwlC family protein [Borrelia afzelii ACA-1] gi|110890838|gb|ABH02006.1| hypothetical protein BAPKO_0778 [Borrelia afzelii PKo] gi|215980296|gb|EEC21117.1| putative Sua5/YciO/YrdC/YwlC family protein [Borrelia afzelii ACA-1] Length = 334 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 98/336 (29%), Positives = 164/336 (48%), Gaps = 18/336 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M + I SN ++KA + + G + PTETVYG+ ++ N A++ ++ +KKRP NPL Sbjct: 1 MILTEIIHSNQIQKAAKLIKMGELVVFPTETVYGIGANAYNEDAVKMIFLVKKRPIENPL 60 Query: 61 ICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I HV + +K+ + P +L L K F PGPLT V + I + NL T R+ Sbjct: 61 IVHVDTVKKIKELSEYIPKSALMLIKRFSPGPLTYVF--KKSIKISRFVSGNLDTVAIRI 118 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK---IG 175 P LI+T P+ PSAN S + S T+ + L + + II +K IG Sbjct: 119 PANKIALNLIKTSKVPIVAPSANISKRPSSTSFEMALKE-LNGLVKGIIKTEKTKDFNIG 177 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPR 233 +EST++ + V ILRPG + + +++ + + + Y + +SPG + HY P+ Sbjct: 178 IESTVIGFDLKDNVLILRPGAITKKMIEKELQGKYTVNYAETKIELEKSPGNIIEHYKPK 237 Query: 234 SQVRLRAIHVNPREALIRFGNVPI--KNIENAIISL-----NLSKTGKLKEAAFNLFNYM 286 V L N R L + + I +++ + + N+ L+E A NL+ + Sbjct: 238 IPVYLFKSQDNIRRYLNKDTKILITKPTLKSYLFNFLWDKKNIKVFNTLEEYAQNLYKEL 297 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 + + I + + LG +INNR+ +A++ R Sbjct: 298 -VNSEKDYKQILSEFVKDEELGYSINNRIRKASSNR 332 >gi|88859366|ref|ZP_01134006.1| hypothetical protein PTD2_20322 [Pseudoalteromonas tunicata D2] gi|88818383|gb|EAR28198.1| hypothetical protein PTD2_20322 [Pseudoalteromonas tunicata D2] Length = 324 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 97/322 (30%), Positives = 157/322 (48%), Gaps = 11/322 (3%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 ++S + KA + ++ G +A+PTETVYGLA D+RN A+ +++ K RP +PLI Sbjct: 5 VLSAQQQADIAKAAQLIEQGELVAVPTETVYGLAADARNAQAVAKIFAAKGRPTNHPLIV 64 Query: 63 HVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 H++D + + A V +L LA FWPGPLTL+L+ + + T L T RVP Sbjct: 65 HLADHTKMADWAKTVPETALKLAAAFWPGPLTLLLN--KAEGVSDVVTGGLTTVGLRVPA 122 Query: 122 GFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L++ Y +A PSAN ++S T +H+L+ + ++ ++DGG + GLESTI Sbjct: 123 HPALLSLLQQYDLAVAAPSANPYKKLSPTCAEHVLT-GLNGKLAAVLDGGACEHGLESTI 181 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 V++ + V+ILR G + L + + PG +K+HY P + +R+ Sbjct: 182 VDLTGD-TVQILRAGPITANELSAVLGQPVTQPQQHNKAV--PGNVKAHYQPNTLLRVMN 238 Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLS---KTGKLKEAAFNLFNYMKIADDSGASSI 297 + + + E N+ K+ LF + AD G + I Sbjct: 239 KTQLNEALQSVTAQIALLSFETKSDKPNVHFVAMPTDAKDYGQVLFRELGKADTLGLAEI 298 Query: 298 AFSSIPNHGLGIAINNRLERAA 319 S P +A ++RL+RAA Sbjct: 299 WLESPPQGQQWLAAHDRLKRAA 320 >gi|187477397|ref|YP_785421.1| hypothetical protein BAV0893 [Bordetella avium 197N] gi|115421983|emb|CAJ48504.1| conserved hypothetical protein [Bordetella avium 197N] Length = 341 Score = 269 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 90/326 (27%), Positives = 142/326 (43%), Gaps = 20/326 (6%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 ++ A L G +A PTETVYGL D+ N A+ +Y K RPA +P+I H++ Sbjct: 5 QIQAAARRLLEGGLVAFPTETVYGLGADAENAQAVAGIYAAKGRPANHPVIVHIAPQGDP 64 Query: 71 KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129 A V P + L + FWPGPLTL+L + + R P + + Sbjct: 65 GYWASEVPPEASKLIEAFWPGPLTLILKRRPGMGEA--VSGGQDSIGIRCPSHPVAQALL 122 Query: 130 TY--------GHPLAIPSANRSGQISITNVKHILSSSICKEIPL--IIDGGISKIGLEST 179 +A PSAN G +S T H+ S + ++DGG S++G+EST Sbjct: 123 AAFAAQKPGGQGGVAAPSANTFGHVSPTLAAHVRSEFPREVAAGMPVLDGGASEVGIEST 182 Query: 180 IVNVQCEKK---VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQV 236 I+++ + +LRPG + E + + + V + + + P++ G LK+HYAPR+ + Sbjct: 183 ILDLSRLDQGMGPVLLRPGHISAEQIAQVLGVAVRR--PDAAAPRASGTLKAHYAPRTPL 240 Query: 237 RLRAIHVNPREALI-RFGNVPIKNIENAIISLNLSK-TGKLKEAAFNLFNYMKIADDSGA 294 L P + R V L + A L+ ++ D G Sbjct: 241 ELVDRASRPLGKIHGRIALVAYSWPPQEGDGLIWHRVPADPARYAQALYATLRELDAQGY 300 Query: 295 SSIAFSSIPNHGLGIAINNRLERAAA 320 I + P A+N+R+ RAAA Sbjct: 301 ERIWVEAPPTDAAWDAVNDRIGRAAA 326 >gi|119897671|ref|YP_932884.1| hypothetical protein azo1380 [Azoarcus sp. BH72] gi|119670084|emb|CAL93997.1| conserved hypothetical protein [Azoarcus sp. BH72] Length = 343 Score = 269 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 102/326 (31%), Positives = 157/326 (48%), Gaps = 18/326 (5%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ A E L AG + +PTETVYGLA D+RNP A+RR++ K RPA +PLI H+ + Sbjct: 11 EDNIQSAAEALRAGELVGLPTETVYGLAADARNPVAVRRIFAAKGRPADHPLIVHLPALD 70 Query: 69 MVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKK 126 + + A+V ++ L + FWPGPLTL+L + T T RVP Sbjct: 71 QLSQWAAAVPVEAVALGRAFWPGPLTLILRRQPH--VPDEVTGGQDTVGVRVPAHPAALA 128 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+ +G LA PSANR G+IS T H+ + + + ++IDGG ++G+ESTI+++ Sbjct: 129 LLAAFGSGLAAPSANRFGRISPTTAAHV-AEELGDAVAMVIDGGACEVGIESTILDLSRL 187 Query: 187 KK--VRILRPGGLEIETLKRAISVEL-----EYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 ILRPG + + + I P+ G L +HYAPR+ +RL Sbjct: 188 DTCGPVILRPGAISADAIAAVIGQRPLGRAESEGAGGAQAPRVAGALAAHYAPRTPMRLV 247 Query: 240 AIHVNPREALIRF-GNVPIKNIENAIISLNLSKT-----GKLKEAAFNLFNYMKIADDSG 293 EA + V + A S T ++ A L+ ++ D + Sbjct: 248 EPAALADEAGRQLAAGVRTGVLVRAGASFPRGVTVRMAPADVEGYAHALYANLRDLDAAE 307 Query: 294 ASSIAFSSIPNHGLGIAINNRLERAA 319 I ++P A+++RL RAA Sbjct: 308 LDLILVEAVPLETAWDAVHDRLGRAA 333 >gi|329767330|ref|ZP_08258855.1| hypothetical protein HMPREF0428_00552 [Gemella haemolysans M341] gi|328836019|gb|EGF85710.1| hypothetical protein HMPREF0428_00552 [Gemella haemolysans M341] Length = 343 Score = 269 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 97/342 (28%), Positives = 169/342 (49%), Gaps = 23/342 (6%) Query: 2 QIMSITDSNALRKACEFL----DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 +I++I+ S + L G IAIPTETVYGL+ ++ N A+ ++YE K RP+ Sbjct: 4 EIINISKSENKEEIYSKLTTYYKEGKLIAIPTETVYGLSANAMNDEAVSKIYEAKGRPSD 63 Query: 58 NPLICHVSDISMVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 NPLI H ++S + + + ++ L FWPGP+TL+L+ + TA L T Sbjct: 64 NPLIVHFYEMSQLDSIVNYNDENIKKLINNFWPGPMTLILNAKDNNGVSKKVTAGLNTLA 123 Query: 117 FRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R+P +++++ LA PSAN SG+ S T +H+ + +I +II+ S IG Sbjct: 124 VRMPSNITAREILKETEVLLAAPSANTSGKPSPTKFEHVY-HDLNGKIDVIIEDEQSDIG 182 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVE----LEYCVDETSTPQSPGMLKSHYA 231 LEST+++ + I RPG + E ++ + E + + +TP +PGM HY+ Sbjct: 183 LESTVIDCT-RYPLVIARPGEITKEDIEGVLGEGSVKYNEEILTKNTTPIAPGMKYRHYS 241 Query: 232 PRSQVRLRAIHVNPREALIRF-----GNVPIKNIENAIISLNLSK------TGKLKEAAF 280 P + + L ++++ G + K +E+ + LN+S ++++ Sbjct: 242 PEADLVLFNDSFEKLISILKERDKKTGFITYKEMESEVDFLNVSVKYLADNEKSVEQSNK 301 Query: 281 NLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 NL+N ++ D+ I I A+ NRL +A + + Sbjct: 302 NLYNILREFDEEEVEEIFILPIEETKENKALLNRLNKAISKK 343 >gi|300310011|ref|YP_003774103.1| translation factor SUA5 [Herbaspirillum seropedicae SmR1] gi|300072796|gb|ADJ62195.1| translation factor (SUA5) protein [Herbaspirillum seropedicae SmR1] Length = 347 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 98/321 (30%), Positives = 153/321 (47%), Gaps = 19/321 (5%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 A L+ G +A PTETVYGL D+ NP AI +Y K RPA +P+I HVS + + Sbjct: 18 HAARTLERGGLVAFPTETVYGLGGDAENPAAIAAIYAAKGRPANHPVIVHVSPEADIGYW 77 Query: 74 -ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY 131 ASV + L FWPGPLTL+L + I + R P + L+ + Sbjct: 78 AASVPVEARRLIASFWPGPLTLILKRAAH--IPDAVAGGQDSVGVRCPAHPVAQALLREF 135 Query: 132 ---GHPLAIPSANRSGQISITNVKHILSS---SICKEIPLIIDGGISKIGLESTIVNVQ- 184 +A PSAN+ G +S T +H+ + ++DGG S++G+ESTIV++ Sbjct: 136 RGGKGGIAGPSANKFGHVSPTTAEHVREEFGSDAGSLVDYVLDGGQSEVGIESTIVDLSR 195 Query: 185 -CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH- 242 +LRPG + E ++ + V L + S P++ G L +HYAP + V A Sbjct: 196 IDTHGPVLLRPGQISAERIEAVLGVPL--ATPDASAPRASGTLDAHYAPHTPVVQVAPEE 253 Query: 243 ---VNPREALIRFGNVPIKNIEN-AIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIA 298 V + A + I ++ ++S+ + A +L+ ++ D +GA I Sbjct: 254 LATVLEKLAALGKKVALIARLQRSGLVSVTRAMPDTADAYAHDLYAALRDMDHTGADLIV 313 Query: 299 FSSIPNHGLGIAINNRLERAA 319 ++P G +N+RL RAA Sbjct: 314 VEALPLSGQWQGVNDRLRRAA 334 >gi|238061924|ref|ZP_04606633.1| Sua5/YciO/YrdC/YwlC family protein [Micromonospora sp. ATCC 39149] gi|237883735|gb|EEP72563.1| Sua5/YciO/YrdC/YwlC family protein [Micromonospora sp. ATCC 39149] Length = 321 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 115/318 (36%), Positives = 178/318 (55%), Gaps = 14/318 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + + +A L AG +A PTETVYGL ++ + A R++E K+RP+ +PLI H++D + Sbjct: 5 SGIAEAASVLRAGGLVAFPTETVYGLGANALDARAAARIFEAKQRPSFDPLITHLADAAD 64 Query: 70 VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + V LA+ FWPGPLTL++D + I P+ T+ L+T RVP + L Sbjct: 65 LTALVGPVPGAVAALAERFWPGPLTLIVDRPAA--IPPIVTSGLETMAVRVPDEASARAL 122 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I G P+A PSANR GQ+S T +H++ + + + +++DGG ++ G+ESTIV+ + + Sbjct: 123 IAAAGVPVAAPSANRFGQLSPTRAEHVV-AGLGGAVDVVLDGGPTRCGIESTIVDARGGQ 181 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR-----AIH 242 V +LR G L +E L+ A+ + + P +PG L +HYAPR+ +R+ A Sbjct: 182 PV-VLRLGALAVEALEEAVG-PVTVRPGSSGQPVAPGTLAAHYAPRTPLRVVGGAEPAAG 239 Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302 R L+ F P+ A+ LS G L AA LF+ + D +G + I + Sbjct: 240 DGIRRGLLAFRERPVGGDWAAVEV--LSPGGDLTVAAARLFDALHRLDAAGVAEIVAERV 297 Query: 303 PNHGLGIAINNRLERAAA 320 P+ G+G AIN+RL RAAA Sbjct: 298 PDVGVGRAINDRLGRAAA 315 >gi|312797153|ref|YP_004030075.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia rhizoxinica HKI 454] gi|312168928|emb|CBW75931.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia rhizoxinica HKI 454] Length = 347 Score = 268 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 93/322 (28%), Positives = 148/322 (45%), Gaps = 25/322 (7%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-VD 77 LDAG +A PTETVYGL D+RNP A+ R+Y K RPA +P+I H++ + Sbjct: 25 LDAGELVAFPTETVYGLGADARNPQAVARIYAAKGRPATHPVIVHLAPGDDPGGWVRTLG 84 Query: 78 PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY----- 131 + L FWPGPLTL+L I + + R P + L+ + Sbjct: 85 SEARRLIDAFWPGPLTLILKRADA--IPDAVSGGQDSIGLRCPSHPVAQALLRAFSDLQH 142 Query: 132 -GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 +A PSAN+ G +S T +H+ + ++DGG +G+ESTI+++ Sbjct: 143 GHGGVAAPSANKFGHVSPTTAQHV-RDEFGDSV-HVLDGGACDVGIESTIIDLSRGFPA- 199 Query: 191 ILRPGGLEIETLKRAISVELEYCVDETST-PQSPGMLKSHYAPRSQVRLRAIHV------ 243 +LRPG + + + + E +T P++ G LK+HYAPR+ + L + Sbjct: 200 LLRPGRITPQQIADVLGAEPRLPDGSDATVPRASGTLKAHYAPRTPLALLPLEAILCEVA 259 Query: 244 ----NPREALIRFGNVPIKNIENAIISLN-LSKTGKLKEAAFNLFNYMKIADDSGASSIA 298 + R A+I ++P A +L ++ A L+ ++ D + I Sbjct: 260 AHAPHERLAVIARADLPQAKALCARPNLQFVAAPEDPHVYARELYRMLRELDGANVLRIF 319 Query: 299 FSSIPNHGLGIAINNRLERAAA 320 +P A+N+RL RAAA Sbjct: 320 IEPLPATAEWAAVNDRLRRAAA 341 >gi|253995512|ref|YP_003047576.1| Sua5/YciO/YrdC/YwlC family protein [Methylotenera mobilis JLW8] gi|253982191|gb|ACT47049.1| Sua5/YciO/YrdC/YwlC family protein [Methylotenera mobilis JLW8] Length = 323 Score = 268 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 93/325 (28%), Positives = 155/325 (47%), Gaps = 18/325 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 +L +A L G +AIPTETVYGLA D+ N +A+++++ IK+RPA +PLI H+ +S V Sbjct: 4 SLEQAIAELKNGGVVAIPTETVYGLAADATNDSALKQIFAIKQRPADHPLIVHIGAMSQV 63 Query: 71 KKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + A+V ++ LA FWPGPLTLVL + + + T RVP L+ Sbjct: 64 QDWATVFPEVARDLASAFWPGPLTLVLPAQPH--VSRVVRGDEPTVALRVPNHPVALALL 121 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 G +A PSAN Q+S T H+ + + I ++DGG ++G+ESTIV+V + + Sbjct: 122 TQGGLSVAAPSANLFTQLSPTTAAHV-EAGLGASI-SVLDGGACQVGIESTIVSVTADGQ 179 Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETST-----PQSPGMLKSHYAPRSQVRL--RAI 241 ++LRPG + + + + + P+ PG HY+PR+ + L Sbjct: 180 WQLLRPGMISEQAIADVAARAASQPTQAVESVDAPVPKVPGQHALHYSPRTPLLLFKDRA 239 Query: 242 HVNPREALIRFGNVPIKNIENAIISLNLSK----TGKLKEAAFNLFNYMKIADDSGASSI 297 + L++ + + ++ ++ A L+ + D + Sbjct: 240 ALLQECELLKQAALSSAAMLIGDGTVPSCPYVQLPNSPEKVAELLYGALHHLDAMKVDRL 299 Query: 298 AFSSIPNHGLGIAINNRLERAAAPR 322 PN + +A+ +RL RA R Sbjct: 300 LVELPPNLPIWMAVLDRLSRA-GYR 323 >gi|203284630|ref|YP_002222370.1| hypothetical protein BDU_738 [Borrelia duttonii Ly] gi|201084073|gb|ACH93664.1| uncharacterized conserved protein [Borrelia duttonii Ly] Length = 334 Score = 268 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 105/333 (31%), Positives = 171/333 (51%), Gaps = 20/333 (6%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ + + + KA +F+++G + PTETVYG+ ++ + AIR L+ +KKRP NPL Sbjct: 1 MKT-EVIKESEIEKAVKFINSGELVVFPTETVYGIGANAYDENAIRMLFIVKKRPITNPL 59 Query: 61 ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I HV I +K+ + ++ L K F PGP+T +L I L L++ R+ Sbjct: 60 IVHVESIEKIKELVEYIPDSAMILMKKFTPGPITFILKNAGK--ISKLINGGLESIAVRI 117 Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID-GGISKIGLE 177 P KLI+ P+A PSAN S + S TN + + + + II +S+IG+E Sbjct: 118 PSDPIALKLIKMSKVPIAAPSANLSKRPSATNFEMAIKE-LNGLVKGIIQKNEVSQIGIE 176 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPRSQ 235 ST+++ + V ILRPG + E ++R ++ + +EY + + QSPG L HY PR Sbjct: 177 STVISFDAKSNVSILRPGSITKEMIERELNGKFNVEYSLGKKILQQSPGNLLEHYRPRIP 236 Query: 236 VRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGK---------LKEAAFNLFNYM 286 V L N R+ + R + I ++N I S +K L+E A N++ Sbjct: 237 VYLFRQKDNIRKYISR-QDTKILIMKNTIKSYWFNKLWNTNHICVFNTLEEYAKNIYKVF 295 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 ++ + I + N+ LG +INNRL++A+ Sbjct: 296 VESERTH-KQILAEFVDNNQLGYSINNRLKKAS 327 >gi|237653845|ref|YP_002890159.1| Sua5/YciO/YrdC/YwlC family protein [Thauera sp. MZ1T] gi|237625092|gb|ACR01782.1| Sua5/YciO/YrdC/YwlC family protein [Thauera sp. MZ1T] Length = 370 Score = 268 bits (687), Expect = 7e-70, Method: Composition-based stats. Identities = 99/338 (29%), Positives = 151/338 (44%), Gaps = 44/338 (13%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL-S 80 G + +PTETVYGLA D+ +P A+++++ K RPA +PLI H+ + + + A+ P + Sbjct: 30 GELVGMPTETVYGLAADALDPEAVKKIFAAKGRPADHPLIVHLPSVEHLPQWAAAIPKDA 89 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPS 139 L LA+ FWPGPLTL+L D+ T T RVP L+ + LA PS Sbjct: 90 LALARAFWPGPLTLILKRTP--DVPDEVTGGQDTVGVRVPAHPVALALLRAFDGGLAAPS 147 Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEI 199 ANR G+IS T H+ + + + +I+DGG +G+ESTI++ + ILRPG + Sbjct: 148 ANRFGRISPTTAAHV-HEELGERVAMILDGGACAVGIESTILDFSRDVP-EILRPGAITP 205 Query: 200 ETLKRAISVELEY---CVDETSTPQS----------------------------PGMLKS 228 E + R I V ET++ ++ G L + Sbjct: 206 EDIARVIGRRPRVPGESVAETASARAGQCGDASGLAEAAAPNAAADAAQPAPRVSGALAA 265 Query: 229 HYAPRSQVRLRA------IHVNPREALIRFGNVPIKNIENAIISLNL-SKTGKLKEAAFN 281 HYAPR+ +RL R + + L+ S A Sbjct: 266 HYAPRTPLRLVEPALLADEAAALAGEGSRVAVLAHSTSDPRDARLSWRSLPADPAAYAQG 325 Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 L+ ++ D GA I ++P A+ +RL RAA Sbjct: 326 LYASLRALDGVGADLILIEALPGGPGWRAVADRLGRAA 363 >gi|224534462|ref|ZP_03675038.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia spielmanii A14S] gi|224514139|gb|EEF84457.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia spielmanii A14S] Length = 333 Score = 268 bits (687), Expect = 7e-70, Method: Composition-based stats. Identities = 98/331 (29%), Positives = 165/331 (49%), Gaps = 17/331 (5%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 I SN ++KA + + G + PTETVYG+ ++ N A++ ++ +KKRP NPLI HV Sbjct: 5 EIISSNQIQKAAKLIKMGELVIFPTETVYGIGANAYNEDAVKMIFLVKKRPIENPLIVHV 64 Query: 65 SDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 + +K+ + P +L L K F PGPLT VL + I + NL T R+P Sbjct: 65 DTVKKIKELSEYIPKSALMLIKKFSPGPLTYVL--KKSIKISRFISGNLDTVAIRIPANK 122 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII--DGGISKIGLESTI 180 LI+ P+A PSAN S + S T+ + L + + II + IG+EST+ Sbjct: 123 IALNLIKASKVPIAAPSANISKRPSSTSFEMALKE-LNGLVRGIIKTENKDFNIGIESTV 181 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPRSQVRL 238 + + V ILRPG + + +++ + + + Y + +SPG + HY P+ V L Sbjct: 182 IGFDLKDNVLILRPGAITKKMIEKELKGKYTVNYAETKIELEKSPGNIIEHYKPKIPVYL 241 Query: 239 RAIHVNPREALIRFGNVPI--KNIENAIISL-----NLSKTGKLKEAAFNLFNYMKIADD 291 N R L + + I +++ + + N+ L+E A NL+ + + + Sbjct: 242 FKSQDNIRRYLNKDTKILITKPTLKSYLFNFLWDKKNIKVFNTLEEYAQNLYKEL-VNSE 300 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 + I + + GLG +INNR+++A++ R Sbjct: 301 NNYKQILSEFVKDEGLGYSINNRIKKASSNR 331 >gi|170733986|ref|YP_001765933.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia cenocepacia MC0-3] gi|169817228|gb|ACA91811.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia cenocepacia MC0-3] Length = 342 Score = 268 bits (686), Expect = 8e-70, Method: Composition-based stats. Identities = 88/318 (27%), Positives = 143/318 (44%), Gaps = 24/318 (7%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81 G +A PTETVYGL D+ NP A+ R+Y K RPA +P+I H+ A P Sbjct: 24 GQLVAFPTETVYGLGGDAANPEAVARIYAAKGRPANHPVIVHLPPGGDPGYWADDLPADA 83 Query: 82 H-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETY-------GH 133 H L + FWPGPLTL+L + I + + R P + + Sbjct: 84 HALIEAFWPGPLTLILKRHA--RIPDAVSGGQDSVGLRCPSHPVAQALLAAFSARRGGHG 141 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 +A PSANR G +S T +H+ + ++DGG S++G+ESTI+++ +LR Sbjct: 142 GVAAPSANRFGHVSPTTAQHVRDEF--GDTVHVLDGGPSEVGIESTILDLSRGFPA-LLR 198 Query: 194 PGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQV----------RLRAIH 242 PG + + + + + + + P++ G LK+HYAPR+ + L A Sbjct: 199 PGHVTPQQIADVLGRAPKLPDGSDATAPRASGTLKAHYAPRTPLALLPFDALEPLLAAAQ 258 Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302 + + + A ++ + A +L+ ++ D + + I + Sbjct: 259 TDGERVALVARASRAGHWAQADGVHFIAAPEDPQAYARDLYGMLRALDRAQVARILVEKL 318 Query: 303 PNHGLGIAINNRLERAAA 320 P IA+N+RL RAAA Sbjct: 319 PETVEWIAVNDRLGRAAA 336 >gi|186475233|ref|YP_001856703.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia phymatum STM815] gi|184191692|gb|ACC69657.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia phymatum STM815] Length = 347 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 97/334 (29%), Positives = 151/334 (45%), Gaps = 37/334 (11%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++ + A LDAG +A PTETVYGL D+ +P AI R+Y K RP+ +P+I H++ Sbjct: 16 ADEIAHAAAMLDAGQLVAFPTETVYGLGGDAESPDAIARIYAAKGRPSNHPVIVHLAPNG 75 Query: 69 MVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK- 126 A + + L FWPGPLTL+L + I + + R P + Sbjct: 76 DPNYWVAQLPSDAQRLIDAFWPGPLTLILKRAAH--IPAAVSGGQDSVGLRCPSHPVAQS 133 Query: 127 ------LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 + +A PSANR G +S T +H+ I ++DGG S +G+ESTI Sbjct: 134 LLTAFSALRNGHGGVAAPSANRFGHVSPTTAQHV-REEFGDAI-HVLDGGPSDVGIESTI 191 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD--ETSTPQSPGMLKSHYAPRSQVRL 238 V++ +LRPG + + + + E+ D + S P++ G LK+HYAPR+ + L Sbjct: 192 VDLSRGFPA-LLRPGHVTPQDIADVLG-EMPRLPDGSDASAPRASGTLKAHYAPRTPLAL 249 Query: 239 RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEA---------------AFNLF 283 V R E + S+ G+ EA A +L+ Sbjct: 250 LPFDVLEPLLAAR------APGERVALVARASRAGRWAEAQGVHFVAAPEDPHLYARDLY 303 Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLER 317 ++ D + S I +P+ IA+N+RL R Sbjct: 304 GLLRALDRANVSRILIEKLPDTIEWIAVNDRLGR 337 >gi|203288164|ref|YP_002223179.1| hypothetical protein BRE_741 [Borrelia recurrentis A1] gi|201085384|gb|ACH94958.1| uncharacterized conserved protein [Borrelia recurrentis A1] Length = 334 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 104/333 (31%), Positives = 171/333 (51%), Gaps = 20/333 (6%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ + + + KA +F+++G + PTETVYG+ ++ + AIR L+ +KKRP NPL Sbjct: 1 MKT-EVIKESEIEKAVKFINSGELVVFPTETVYGIGANAYDENAIRMLFIVKKRPITNPL 59 Query: 61 ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I HV I +K+ + ++ L K F PGP+T +L I L L++ R+ Sbjct: 60 IVHVESIEKIKELVEYIPDSAMILMKKFTPGPITFILKNAGK--ISKLINGGLESIAVRI 117 Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID-GGISKIGLE 177 P KLI+ P+A PSAN S + S TN + + + + II +S+IG+E Sbjct: 118 PSDPIALKLIKMSKVPIAAPSANLSKRPSATNFEMAIKE-LNGLVKGIIQKNEVSQIGIE 176 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPRSQ 235 ST+++ + V ILRPG + E ++R ++ + +EY + + QSPG L HY PR Sbjct: 177 STVISFDAKSNVSILRPGSITKEMIERELNGKFNVEYSLGKKILQQSPGNLLEHYRPRIP 236 Query: 236 VRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGK---------LKEAAFNLFNYM 286 V L N R+ + + + I ++N I S +K L+E A N++ Sbjct: 237 VYLFRQKDNIRKYISQ-QDTKILIMKNTIKSYWFNKLWNTNHICVFNTLEEYAKNIYKVF 295 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 ++ + I + N+ LG +INNRL++A+ Sbjct: 296 VESERTH-KQILAEFVDNNQLGYSINNRLKKAS 327 >gi|224532051|ref|ZP_03672683.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia valaisiana VS116] gi|224511516|gb|EEF81922.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia valaisiana VS116] Length = 335 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 99/336 (29%), Positives = 164/336 (48%), Gaps = 18/336 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I SN ++KA + + G + PTETVYG+ ++ N A++ ++ +KKRP NPL Sbjct: 1 MISTEIIRSNQIQKAAKLIKMGELVVFPTETVYGIGANAYNEDAVKMIFLVKKRPINNPL 60 Query: 61 ICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I HV + +K+ + P +L L K F PGPLT VL + I + NL T R+ Sbjct: 61 IVHVDTVKKIKELSEYIPKSALMLIKKFSPGPLTYVL--KKSIKISRFVSGNLNTVAIRI 118 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII---DGGISKIG 175 P LI+ P+ PSAN S + S TN + L + + II + IG Sbjct: 119 PANKIALNLIKASKVPIVAPSANISKRPSSTNFEMALKE-LNGLVGGIIKTTENKDFNIG 177 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETST--PQSPGMLKSHYAPR 233 +EST++ + V ILRPG + + +++ + + ET+ +SPG + HY P+ Sbjct: 178 IESTVIGFDLKDNVLILRPGAITKKMIEKELQGQYTVSYAETTIELEKSPGNIIEHYKPK 237 Query: 234 SQVRLRAIHVNPREALIRFGNVPIKN--IENAIISL-----NLSKTGKLKEAAFNLFNYM 286 V L N R L + + I +++ + + N++ L+E A NL+ + Sbjct: 238 IPVYLFKSQDNIRRYLNKDTKILITKSTLKSYLFNFLWDKKNITIFNTLEEYAQNLYKEL 297 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 + ++ I + + LG +INNR+ +A++ R Sbjct: 298 -VNSENNYKKILSEFVKDEELGYSINNRIRKASSNR 332 >gi|297170862|gb|ADI21881.1| putative translation factor (SUA5) [uncultured verrucomicrobium HF0130_25O04] Length = 325 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 103/318 (32%), Positives = 160/318 (50%), Gaps = 18/318 (5%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 + L G +A+PTETVYGLA + + A+++++E+K+RP NPLI HV D ++ A V Sbjct: 11 DTLLGGEVVALPTETVYGLACLALDEKAVKKVFELKERPPTNPLIVHVLDSRQAEQIAHV 70 Query: 77 DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPL 135 + + L + FWPGPLTL+L I TA L T R P +K+++ P+ Sbjct: 71 NSFAKLLCQKFWPGPLTLILP--KRQMIPDSVTAGLDTVAVRSPSHPLFRKILQEAEQPI 128 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 A PSAN +S T + + S + P I+DGG IGLEST++++ + ILRPG Sbjct: 129 AAPSANLFSMVSSTTPQEVF-DSFGEACPPILDGGKCNIGLESTVLDLTSDTP-SILRPG 186 Query: 196 GLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLR----AIHVNPREA 248 + E L+ + E+ + D +SPG+ HY+ + +RL AI R Sbjct: 187 PISKEELEEFLGFEISNPKKNTDSRVARKSPGLSAKHYSTETPIRLHENISAIQQIERWT 246 Query: 249 LIRFGNVPIKNI-----ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303 +P K++ + S TG ++ A NL+ +K AD I + + Sbjct: 247 ADDLIILPCKDLIVGFDSEPATIITFSATGNTQDIAHNLYATLKEADQLEKKLIHLALLE 306 Query: 304 NH-GLGIAINNRLERAAA 320 GL A+N+RL RA++ Sbjct: 307 ETDGLARAVNDRLTRASS 324 >gi|294339381|emb|CAZ87737.1| putative Translation factor, SUA5 type [Thiomonas sp. 3As] Length = 334 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 97/322 (30%), Positives = 150/322 (46%), Gaps = 17/322 (5%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A L+AG + +PTETVYGLA D+ N A+ R+Y K RPA +P+I H+ + Sbjct: 12 PREIIEAVRRLEAGELVGLPTETVYGLAADAENVQAVARIYAAKGRPADHPVIVHIHRAA 71 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 + A V + LA FWPGPLTL+L + T R P + Sbjct: 72 DLGHWASEVPETARKLAAAFWPGPLTLILPRKPG--VADACAGGQNTIGLRCPSHPVAQA 129 Query: 128 IET----YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + LA PSANR G+IS T H+ + + ++ L++DGG +G+ESTIV+ Sbjct: 130 VLAIFKGGQGGLAAPSANRFGRISPTTAAHV-HAELGDDL-LVLDGGACAVGIESTIVDC 187 Query: 184 QCEKKVRILRPGGLEIETLKRAISV-ELEYCVDETSTPQSPGMLKSHYAPRSQV------ 236 + RILRPG L+ + + + V E + S P+ G+L +HYAPR+ + Sbjct: 188 T-AQPPRILRPGQLQAADIAQTLGVAEADLLRPAESAPRVAGVLPAHYAPRTPLQWCSRE 246 Query: 237 RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296 ++ A A R G + A ++ A L+ ++ D +G Sbjct: 247 QINARWEIGTSAGRRIGVLAFPPQPLAPHPSWVTLPADPAAYAQQLYAVLRRLDAAGLEE 306 Query: 297 IAFSSIPNHGLGIAINNRLERA 318 I +P +A+ +RL RA Sbjct: 307 ICVEVLPPSPAWLALRDRLTRA 328 >gi|242765157|ref|XP_002340917.1| translation initiation protein Sua5 [Talaromyces stipitatus ATCC 10500] gi|218724113|gb|EED23530.1| translation initiation protein Sua5 [Talaromyces stipitatus ATCC 10500] Length = 423 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 96/371 (25%), Positives = 145/371 (39%), Gaps = 84/371 (22%) Query: 24 PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH---------A 74 P+ PTETVYGL D+ +++ +Y+ K+RP+ NPLI HV I MV + Sbjct: 56 PVGFPTETVYGLGADATRSGSVQGIYKAKQRPSDNPLIVHVDSIEMVNRLLNPNGGSPTT 115 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGH 133 + + L FWPG LT++L + + TANL T R+P F + LI Sbjct: 116 KIPAIYEPLISRFWPGALTILLPNPKGSLLAKEVTANLPTFGVRMPSSAFARLLIHVTDR 175 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 PLA PSAN S + S T +H+ + +GG +G+EST+V+ +LR Sbjct: 176 PLAAPSANASTKPSPTTAEHVYHD--------LQNGGPCGVGVESTVVDGLTNPPA-VLR 226 Query: 194 PGGLEIETLKRAISVE------LEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 PGG+ IE ++ E + + P+SPGM HY+P+++V L + Sbjct: 227 PGGIGIEEIRTCPGWENVQVGYNDSALQGKEAPRSPGMKYRHYSPKARVVLFEAGSDLAS 286 Query: 248 ALIRFG--------------------NVPIKNIENAIISLNLSKT--------------- 272 R + I + I+L+LS Sbjct: 287 VADRVKKDLIGGGGSSNGNANGFSGRKIGIVRTKTWPIALSLSDAETKQTTQASNDGDTL 346 Query: 273 ----------------------GKLKEAAFNLFNYMKIADDSGASSIAFSSI--PNHGLG 308 + A LF ++ D +I I L Sbjct: 347 SIHQISVPLGDSSTTVYDVHLGASAESIARGLFATLRSLDAENVDAIYIEGIRDDEGDLA 406 Query: 309 IAINNRLERAA 319 A+ NRL +AA Sbjct: 407 AAVMNRLRKAA 417 >gi|222152013|ref|YP_002561173.1| hypothetical protein MCCL_1770 [Macrococcus caseolyticus JCSC5402] gi|222121142|dbj|BAH18477.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 334 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 90/305 (29%), Positives = 142/305 (46%), Gaps = 9/305 (2%) Query: 20 DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDP 78 AG IAIPTETVYGLA D+ N A+ +++ K RP NPLI H+ +S ++ + Sbjct: 29 KAGETIAIPTETVYGLAADATNREAVAAIFKAKGRPQDNPLIVHIHHLSQLEWFTHDIHA 88 Query: 79 LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAI 137 + L FWPGP++ ++ + + TA L T R+P +LIE LA Sbjct: 89 AAYKLMDYFWPGPISFIVPVKQGI-LAESVTAGLNTVAVRMPAHKVAHQLIEMTDLLLAA 147 Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197 PSAN SG+ S T +H++ + +I I+ ++G+EST+V+ + RI RPG + Sbjct: 148 PSANTSGKPSPTKAEHVI-HDMEGKIFGIVQSEQVEVGIESTVVDC-SQYPFRIARPGAI 205 Query: 198 EIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPI 257 L+ + + P +PGM HYAP S + L + A P+ Sbjct: 206 THNDLEMVVPGCISDERIMGDKPIAPGMKYRHYAPDSPLELVEHFESLELAANEAVIAPL 265 Query: 258 KNIE--NAIISLNLSKT-GKLKEAAFNLFNYMKIADD-SGASSIAFSSIPNHGLGIAINN 313 N L T A ++L++ ++ AD G I + ++ A+ N Sbjct: 266 SEKHKVNGGWFFKLGTTYEDSGGAMYDLYDALRSADSIEGIEKIYITDFTSYNGSDALMN 325 Query: 314 RLERA 318 R+ +A Sbjct: 326 RINKA 330 >gi|291532654|emb|CBL05767.1| translation factor SUA5 [Megamonas hypermegale ART12/1] Length = 271 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 82/252 (32%), Positives = 129/252 (51%), Gaps = 8/252 (3%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 ++ D AL++A + + G +A PTETVYGL D N A + +Y K RP+ NPLI H Sbjct: 8 INSIDDEALKRAGQCIKDGGLVAFPTETVYGLGGDGLNEVASKNIYLAKGRPSDNPLILH 67 Query: 64 VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 ++D M+ + V P++ + F PGP+T++L + + T L T R+P Sbjct: 68 INDQKMLGRIVSEVTPMAKKIMTAFCPGPITIILP--KSNIVPKAVTGGLDTIAVRMPDN 125 Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 + LI+ P+A PSAN SG+ S T + + + I +++DGG + G+ESTIV Sbjct: 126 DIARALIKYADTPIAAPSANISGRPSPTTAQAVYKD-LQSRIDMVLDGGACQFGVESTIV 184 Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 + + + ILRPG + E L+ V + V P++PGM HYAP+ + L Sbjct: 185 DCTEDVPI-ILRPGAITKEMLEEIFPVVKIDKAIVGANVVPKAPGMKYKHYAPKVDMILI 243 Query: 240 AIHVNPREALIR 251 + I+ Sbjct: 244 EGDNEKMSSSIK 255 >gi|73540259|ref|YP_294779.1| translation factor SUA5 [Ralstonia eutropha JMP134] gi|72117672|gb|AAZ59935.1| translation factor SUA5 [Ralstonia eutropha JMP134] Length = 328 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 85/330 (25%), Positives = 146/330 (44%), Gaps = 18/330 (5%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 + + + L +A L+AG +A PTETVYGL D+ +P A+ R++ +K RP+ +P+I Sbjct: 1 MSRMPTAAELDEAVRLLEAGQLVAFPTETVYGLGADAESPEAVARIFALKGRPSNHPVIV 60 Query: 63 HVSDISMVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 HV D + + P + L + FWPGPLTL+L S IH + R P Sbjct: 61 HVVDGADIGYWVDEVPEAATKLIEAFWPGPLTLILKRASH--IHAAVAGGQDSIGLRCPS 118 Query: 122 GFTKKLI----ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 + + + +A PSAN+ GQ+S T +H+ + +++G ++G+E Sbjct: 119 HPVAQALLSRFKRGRGGIAAPSANKFGQVSPTTAQHVRDEF--GDAVYVLEGDGVEVGIE 176 Query: 178 STIVNVQCEKK---VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRS 234 STIV++ + +LRPG + + + + G LK+HYAP + Sbjct: 177 STIVDLSRLDQGIGPVLLRPGAITPAMMAKVLGEAPLPPDAAAPRA--SGTLKAHYAPHT 234 Query: 235 QVRLRAIHVNPREALIRFGNVPIKNIENAII----SLNLSKTGKLKEAAFNLFNYMKIAD 290 + L + + + + A I + A L+ ++ D Sbjct: 235 PLVLADAAELAAQLPSLAADARVAWVGRAPIEDPRCTWVQAPADATAYARELYRLLRKLD 294 Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAA 320 G + + F +P + +RL+RAAA Sbjct: 295 KQGFTQLVFEPLPEGHEWAGVRDRLQRAAA 324 >gi|270158487|ref|ZP_06187144.1| Sua5/YciO/YrdC family protein [Legionella longbeachae D-4968] gi|289166681|ref|YP_003456819.1| translation initiation protein [Legionella longbeachae NSW150] gi|269990512|gb|EEZ96766.1| Sua5/YciO/YrdC family protein [Legionella longbeachae D-4968] gi|288859854|emb|CBJ13840.1| putative translation initiation protein [Legionella longbeachae NSW150] Length = 321 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 99/323 (30%), Positives = 152/323 (47%), Gaps = 19/323 (5%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A L G P+AIPTETVYGLA N AI+ ++ IK RP +PLI HV++ Sbjct: 5 TTNIDRAIHDLQQGKPVAIPTETVYGLAAPINNEQAIKAVFAIKNRPLNHPLIIHVAENW 64 Query: 69 MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + P + L K FWPGPLTLV I PL T T R P ++ Sbjct: 65 ALDLLVKDIPAYAQQLIKKFWPGPLTLVF-HCKQDQISPLITGGQTTVAIRCPAHPIAQE 123 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L++ G PL PSAN G++S T +H+ S S + I+DGG +G+ESTI++ Sbjct: 124 LLKKLGVPLVAPSANPFGKVSPTTAEHV-SESFYNQELTILDGGRCTVGIESTIIDATDP 182 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246 + +ILR G ++ + + I++ + ++ + PG L SHY P+ ++ + + Sbjct: 183 QNYQILRHGIIDEKAIAELIALP---SLRGENSLRVPGKLDSHYQPQKKLY----YFDSY 235 Query: 247 EALIRFGNVPIKNIENAIISLNLSKT--------GKLKEAAFNLFNYMKIADDSGASSIA 298 L F NI + ++ AF+L+ ++ AD S A I Sbjct: 236 NLLTHFCQKNGDNIYVIASKKPMGMREEYFHLLEDNPEKVAFDLYYQLRKADASNAEVIV 295 Query: 299 FSSIPNHGLGIAINNRLERAAAP 321 P G + R+ +A AP Sbjct: 296 IELPPATGAWQGVRERILKAGAP 318 >gi|71906092|ref|YP_283679.1| translation factor SUA5 [Dechloromonas aromatica RCB] gi|71845713|gb|AAZ45209.1| translation factor SUA5 [Dechloromonas aromatica RCB] Length = 331 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 103/341 (30%), Positives = 165/341 (48%), Gaps = 29/341 (8%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 MS T+++ ++A E L AG +A+PTETVYGL D+ NP A+ +++ K RPA +PLI H Sbjct: 1 MSPTEAD-YQRAVELLRAGELVAMPTETVYGLGADAANPAAVAKIFAAKGRPADHPLIVH 59 Query: 64 VSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 +S V + A V ++ L + FWPGPLT++L + + T T RVP Sbjct: 60 LSGHDAVDRWAEQVPAVAWELMEAFWPGPLTVILKKQAW--VPDAVTGGQDTVGLRVPGH 117 Query: 122 GFTKKLIETYGHP------LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 +L+ + +A PSANR G+IS T H+ + + + +I+DGG +G Sbjct: 118 PVALELLRRFAAATGEHAGIAAPSANRFGRISPTTAAHV-AEELGDAVSMILDGGPCAVG 176 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQ 235 +ESTIV+ + V +LRPG + L+ + P+ G L++HYAP + Sbjct: 177 IESTIVDCSRGEPV-VLRPGHISPLHLEAILGRRPAIET-AVGAPRVSGSLEAHYAPVTP 234 Query: 236 VRLRAI-----------HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFN 284 +R+ A H + A+I P + +A + G A +++ Sbjct: 235 LRMVAGERLLDFINAQRHRGGKCAVISANQPPQAGMPHAWRLMPADPVG----YAHDIYA 290 Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325 ++ D +G I +IP A+ +RL RA A Q+ Sbjct: 291 ALRDMDHAGVDLIVVEAIPEDSAWAAVADRLRRAVAGAGQA 331 >gi|254247338|ref|ZP_04940659.1| Sua5/YciO/YrdC/YwlC [Burkholderia cenocepacia PC184] gi|124872114|gb|EAY63830.1| Sua5/YciO/YrdC/YwlC [Burkholderia cenocepacia PC184] Length = 342 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 88/318 (27%), Positives = 142/318 (44%), Gaps = 24/318 (7%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81 G +A PTETVYGL D+ NP A+ R+Y K RPA +P+I H+ A P Sbjct: 24 GQLVAFPTETVYGLGGDAANPEAVARIYAAKGRPANHPVIVHLPPGGDPGYWADDLPADA 83 Query: 82 H-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETY-------GH 133 H L FWPGPLTL+L + I + + R P + + Sbjct: 84 HALIDAFWPGPLTLILKRHA--RIPDAVSGGQDSVGLRCPSHPVAQALLAAFSARRGGHG 141 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 +A PSANR G +S T +H+ + ++DGG S++G+ESTI+++ +LR Sbjct: 142 GVAAPSANRFGHVSPTTAQHVRDEF--GDTVHVLDGGASEVGIESTILDLSRGFPA-LLR 198 Query: 194 PGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQV----------RLRAIH 242 PG + + + + + + + P++ G LK+HYAPR+ + L A Sbjct: 199 PGHVTPQQIADVLGRAPKLPDGSDATAPRASGTLKAHYAPRTPLALLPFDALEPLLAAAQ 258 Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302 + + + A ++ + A +L+ ++ D + + I + Sbjct: 259 TDGERVALVARASRAGHWAQADGVHFIAAPEDPQAYARDLYGMLRALDRAQVARILVEKL 318 Query: 303 PNHGLGIAINNRLERAAA 320 P IA+N+RL RAAA Sbjct: 319 PETVEWIAVNDRLGRAAA 336 >gi|312147861|gb|ADQ30520.1| Sua5/YciO/YrdC/YwlC family protein, putative [Borrelia burgdorferi JD1] Length = 337 Score = 266 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 99/336 (29%), Positives = 164/336 (48%), Gaps = 18/336 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I S+ ++KA + + G + PTETVYG+ ++ N A++ ++ +KKRP NPL Sbjct: 1 MISTEIISSSQIQKAAKLIKMGELVVFPTETVYGIGANAYNEDAVKMIFLVKKRPINNPL 60 Query: 61 ICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I HV + +K+ + P +L L K F PGPLT VL + I + NL T R+ Sbjct: 61 IVHVDTVKKIKELSEYIPKSALMLIKKFSPGPLTYVL--KKSIKISRFVSGNLDTVAIRI 118 Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK---IG 175 P LI+ P+ PSAN S + S TN + L + + II +K IG Sbjct: 119 PANKTALSLIKASKVPIVAPSANISKRPSSTNFEMALKE-LNGLVRGIIKPEENKDFNIG 177 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPR 233 +EST+V + V ILRPG + + ++ + + + Y + +SPG HY P+ Sbjct: 178 IESTVVGFDLKDNVLILRPGAITKKMIENELQGKYTVNYAETKMELEKSPGNTIEHYKPK 237 Query: 234 SQVRLRAIHVNPREALIRFGNVPI--KNIENAIISL-----NLSKTGKLKEAAFNLFNYM 286 V L N R L + + I +++ + + N++ L+E A NL+ + Sbjct: 238 IPVYLFKSQDNIRRYLNKDTKILITKATLKSYLFNFFWNKKNITVFNTLEEYAQNLYKEL 297 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 + ++ I + + LG +INNR+++A++ R Sbjct: 298 -VNSENNYKQILSEFLKDEELGHSINNRIKKASSNR 332 >gi|315123100|ref|YP_004065106.1| putative translation factor [Pseudoalteromonas sp. SM9913] gi|315016860|gb|ADT70197.1| putative translation factor [Pseudoalteromonas sp. SM9913] Length = 335 Score = 266 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 94/323 (29%), Positives = 154/323 (47%), Gaps = 19/323 (5%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A L AG +A+PTETVYGLA D+ N A+ +++ K RP +PLI H+ ++S Sbjct: 13 EERINQAVALLKAGECVALPTETVYGLAADASNSDAVAKIFAAKGRPTNHPLIVHIPELS 72 Query: 69 MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKK 126 V A V+ ++ LA+ FWPGPLTL+L+ + T L + RVP Sbjct: 73 HVHHWAKNVNKAAITLAEAFWPGPLTLILNAKDNLNSP--VTGGLNSIGLRVPAHPQFLA 130 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 +++ LA PSANR Q+S N H++ + I +++GG +G+ESTIV+ E Sbjct: 131 VLKQLNTGLAAPSANRYKQLSPINTAHVMRD-LNGRISAVLEGGQCDVGIESTIVDATTE 189 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP- 245 + +RILRPG + + + + + + PG +K+HY P + L P Sbjct: 190 Q-LRILRPGPISAADILQKTGLNVTTPLSHNEAV--PGNVKAHYQPHAPAILINSADFPS 246 Query: 246 ----REALIRFGNVPIKNIENAIISLNLSK------TGKLKEAAFNLFNYMKIADDSGAS 295 L + E +++ ++S + E A N++ + D++ Sbjct: 247 VLSNTPHLQTHYLIYSTKAEQQLLANHISPQYITKLSACPVEYAKNMYKTLHHIDETTPM 306 Query: 296 SIAFSSIPNHGLGIAINNRLERA 318 +I P A+N+RL RA Sbjct: 307 NIYIEKPPVSSKWGAVNDRLSRA 329 >gi|159045624|ref|YP_001534418.1| Sua5/YciO/YrdC/YwlC family protein [Dinoroseobacter shibae DFL 12] gi|157913384|gb|ABV94817.1| Sua5/YciO/YrdC/YwlC family protein [Dinoroseobacter shibae DFL 12] Length = 325 Score = 266 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 106/296 (35%), Positives = 156/296 (52%), Gaps = 21/296 (7%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 +A PTETVYGL D+R+ A+ ++ K RP+ NPLI HV D++ + + P L LA Sbjct: 30 VAFPTETVYGLGGDARSDRAVAGIFAAKGRPSFNPLIVHVPDLAAAGRLVDLPPAGLALA 89 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRS 143 + FWPG LTLV + + I PL TA L+T RVP + L+ + P+A PSAN S Sbjct: 90 EAFWPGALTLVAPMRAEAGISPLVTAGLETLAVRVPAHSAAQALLRGFDGPVAAPSANPS 149 Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203 G +S T H+L + +I ++DGG +GLESTIV++ E + +LRPGG+ E L Sbjct: 150 GGVSPTTAAHVL-DGLDGKIAAVLDGGACPVGLESTIVSLAGETPM-LLRPGGVTAEALA 207 Query: 204 RAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENA 263 + + + + P +PG L SHYAP + VRL A E + FG + Sbjct: 208 QVLGAPIAEGAGSATQPTAPGQLASHYAPDAPVRLNATARQDGEVWLGFGP-------DC 260 Query: 264 IISLNLSKTGK------LKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINN 313 ++LS++G+ AA + + + IA + +P GLG AIN+ Sbjct: 261 PGDMSLSESGELAEAAARLFAALRAMDAL-----AEGRRIAVAPVPQTGLGAAIND 311 >gi|296157275|ref|ZP_06840111.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. Ch1-1] gi|295892611|gb|EFG72393.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. Ch1-1] Length = 346 Score = 266 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 89/327 (27%), Positives = 146/327 (44%), Gaps = 23/327 (7%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + A LDAG +A PTETVYGL D+ NP A+ R+Y K RPA +P+I H++ Sbjct: 16 AAQIEHAAALLDAGELVAFPTETVYGLGGDAENPDAVARIYAAKGRPANHPVIVHLAPQG 75 Query: 69 MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + + L FWPGPLTL+L + I + + R P + Sbjct: 76 DPNYWVEYLPAEAQRLIDAFWPGPLTLILKRAA--RIPAAVSGGQDSVGLRCPSHPVAQA 133 Query: 127 LIETY------GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L+E + +A PSANR G +S T +H+ + ++DGG S +G+ESTI Sbjct: 134 LLEAFSALRSGHGGVAAPSANRFGHVSPTTAQHVRDEF--GDTIHVLDGGASDVGIESTI 191 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQV--- 236 +++ +LRPG + + + + + + P++ G LK+HYAPR+ + Sbjct: 192 LDLSRGFPA-LLRPGRVTPQDIADVLGEAPRLPDGSDATAPRASGTLKAHYAPRTPLALL 250 Query: 237 ------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD 290 L A + + +A ++ A L+ +++ D Sbjct: 251 PFGALETLLAARQADERVALVARASRAGHWADAEGVHFIAAPEDPHVYARELYGLLRVLD 310 Query: 291 DSGASSIAFSSIPNHGLGIAINNRLER 317 + S I +P+ IA+N+RL R Sbjct: 311 HANVSRILIEKLPDTIEWIAVNDRLGR 337 >gi|223889416|ref|ZP_03624002.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi 64b] gi|224532614|ref|ZP_03673236.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi WI91-23] gi|224533276|ref|ZP_03673870.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi CA-11.2a] gi|223885102|gb|EEF56206.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi 64b] gi|224512470|gb|EEF82849.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi WI91-23] gi|224513441|gb|EEF83798.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi CA-11.2a] gi|312149111|gb|ADQ29182.1| Sua5/YciO/YrdC/YwlC family protein, putative [Borrelia burgdorferi N40] Length = 337 Score = 266 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 99/336 (29%), Positives = 165/336 (49%), Gaps = 18/336 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I S+ ++KA + + G + PTETVYG+ ++ N A++ ++ +KKRP NPL Sbjct: 1 MISTEIISSSQIQKAAKLIKMGELVVFPTETVYGIGANAYNEDAVKMIFLVKKRPINNPL 60 Query: 61 ICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I HV + +K+ + P +L L K F PGPLT VL + I + NL T R+ Sbjct: 61 IVHVDTVKKIKELSEYIPKSALMLIKKFSPGPLTYVL--KKSIKISRFVSGNLDTVAIRI 118 Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK---IG 175 P LI+ P+ PSAN S + S TN + L + + II +K IG Sbjct: 119 PANKTALSLIKASKVPIVAPSANISKRPSSTNFEMALKE-LNGLVRGIIKPEENKDFNIG 177 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPR 233 +EST+V + V ILRPG + + ++ + + + Y + +SPG + HY P+ Sbjct: 178 IESTVVGFDLKDNVLILRPGAITKKMIENELQGKYTVNYAETKMELEKSPGNIIEHYKPK 237 Query: 234 SQVRLRAIHVNPREALIRFGNVPI--KNIENAIISL-----NLSKTGKLKEAAFNLFNYM 286 V L N R L + + I +++ + + N++ L+E A NL+ + Sbjct: 238 IPVYLFKSQDNIRRYLNKDTKILITKATLKSYLFNFFWDKKNITVFNTLEEYAQNLYKEL 297 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 + ++ I + + LG +INNR+++A++ R Sbjct: 298 -VNSENNYKQILSEFLKDEELGHSINNRIKKASSNR 332 >gi|15595079|ref|NP_212868.1| hypothetical protein BB0734 [Borrelia burgdorferi B31] gi|218249379|ref|YP_002375233.1| putative Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi ZS7] gi|225548887|ref|ZP_03769864.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi 94a] gi|226321432|ref|ZP_03796959.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi Bol26] gi|2688669|gb|AAC67081.1| conserved hypothetical protein [Borrelia burgdorferi B31] gi|218164567|gb|ACK74628.1| putative Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi ZS7] gi|225370490|gb|EEG99926.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi 94a] gi|226233228|gb|EEH31980.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi Bol26] Length = 337 Score = 266 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 99/336 (29%), Positives = 165/336 (49%), Gaps = 18/336 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I S+ ++KA + + G + PTETVYG+ ++ N A++ ++ +KKRP NPL Sbjct: 1 MISTEIISSSQIQKAAKLIKMGELVVFPTETVYGIGANAYNEDAVKMIFLVKKRPINNPL 60 Query: 61 ICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I HV + +K+ + P +L L K F PGPLT VL + I + NL T R+ Sbjct: 61 IVHVDTVKKIKELSEYIPKSALMLIKKFSPGPLTYVL--KKSIKISRFVSGNLDTVAIRI 118 Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK---IG 175 P LI+ P+ PSAN S + S TN + L + + II +K IG Sbjct: 119 PANKTALSLIKASKVPIVAPSANISKRPSSTNFEMALKE-LNGLVRGIIKPEENKDFNIG 177 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPR 233 +EST+V + V ILRPG + + ++ + + + Y + +SPG + HY P+ Sbjct: 178 IESTVVGFDLKDNVLILRPGAITKKMIENELQGKYTVNYAETKMELEKSPGNIIEHYKPK 237 Query: 234 SQVRLRAIHVNPREALIRFGNVPI--KNIENAIISL-----NLSKTGKLKEAAFNLFNYM 286 V L N R L + + I +++ + + N++ L+E A NL+ + Sbjct: 238 IPVYLFKSQDNIRRYLNKDTKILITKATLKSYLFNFFWNKKNITVFNTLEEYAQNLYKEL 297 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 + ++ I + + LG +INNR+++A++ R Sbjct: 298 -VNSENNYKQILSEFLKDEELGHSINNRIKKASSNR 332 >gi|115352720|ref|YP_774559.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia ambifaria AMMD] gi|115282708|gb|ABI88225.1| translation factor SUA5 [Burkholderia ambifaria AMMD] Length = 342 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 87/318 (27%), Positives = 140/318 (44%), Gaps = 24/318 (7%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL-S 80 G +A PTETVYGL D+ NP A+ R+Y K RPA +P+I H+ A P + Sbjct: 24 GQLVAFPTETVYGLGGDAANPEAVARIYAAKGRPANHPVIVHLPPGGDPGYWADDLPADA 83 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETY-------GH 133 L FWPGPLTL+L + I + + R P + + Sbjct: 84 QALIDAFWPGPLTLILKRHA--RIPDAVSGGQDSVGLRCPSHPVAQALLAAFSARRGGHG 141 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 +A PSANR G +S T +H+ + ++DGG S++G+ESTI+++ +LR Sbjct: 142 GVAAPSANRFGHVSPTTAQHVRDEF--GDTVHVLDGGASEVGIESTILDLSRGFPA-LLR 198 Query: 194 PGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRLR----------AIH 242 PG + + + + + + P++ G LK+HYAPR+ + L A Sbjct: 199 PGHVTPQQIADVLGRAPRLPDGGDATAPRASGTLKAHYAPRTPLSLMPFDALEPLLAAAQ 258 Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302 + + A ++ + A +L+ ++ D + + I + Sbjct: 259 TDGERVALVARASRAGRWAQADGVHFVAAPEDPQAYARDLYGMLRALDRAQVARILVEKL 318 Query: 303 PNHGLGIAINNRLERAAA 320 P IA+N+RL RAAA Sbjct: 319 PETVEWIAVNDRLGRAAA 336 >gi|107023558|ref|YP_621885.1| Sua5/YciO/YrdC/YwlC [Burkholderia cenocepacia AU 1054] gi|116690642|ref|YP_836265.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia cenocepacia HI2424] gi|105893747|gb|ABF76912.1| translation factor SUA5 [Burkholderia cenocepacia AU 1054] gi|116648731|gb|ABK09372.1| translation factor SUA5 [Burkholderia cenocepacia HI2424] Length = 342 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 88/318 (27%), Positives = 143/318 (44%), Gaps = 24/318 (7%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81 G +A PTETVYGL D+ NP A+ R+Y K RPA +P+I H+ A P Sbjct: 24 GQLVAFPTETVYGLGGDAANPEAVARIYAAKGRPANHPVIVHLPPGGDPGYWADDLPADA 83 Query: 82 H-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETY-------GH 133 H L + FWPGPLTL+L + I + + R P + + Sbjct: 84 HALIEAFWPGPLTLILKRHA--RIPDAVSGGQDSVGLRCPSHPVAQALLAAFSARRGGHG 141 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 +A PSANR G +S T +H+ + ++DGG S++G+ESTI+++ +LR Sbjct: 142 GVAAPSANRFGHVSPTTAQHVRDEF--GDTVHVLDGGASEVGIESTILDLSRGFPA-LLR 198 Query: 194 PGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQV----------RLRAIH 242 PG + + + + + + + P++ G LK+HYAPR+ + L A Sbjct: 199 PGHVTPQQIADVLGRAPKLPDGSDATAPRASGTLKAHYAPRTPLALLPFDALEPLLAAAQ 258 Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302 + + + A ++ + A +L+ ++ D + + I + Sbjct: 259 TDGERVALVARASRAGHWAQADGVHFIAAPEDPQAYARDLYGMLRALDRAQVARILIEKL 318 Query: 303 PNHGLGIAINNRLERAAA 320 P IA+N+RL RAAA Sbjct: 319 PETVEWIAVNDRLGRAAA 336 >gi|195941552|ref|ZP_03086934.1| hypothetical protein Bbur8_01541 [Borrelia burgdorferi 80a] Length = 337 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 99/336 (29%), Positives = 165/336 (49%), Gaps = 18/336 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I S+ ++KA + + G + PTETVYG+ ++ N A++ ++ +KKRP NPL Sbjct: 1 MISTEIISSSQIQKAAKLIKMGELVVFPTETVYGIGANAYNEDAVKMIFLVKKRPINNPL 60 Query: 61 ICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I HV + +K+ + P +L L K F PGPLT VL + I + NL T R+ Sbjct: 61 IVHVDTVKKIKELSEYIPKSALILIKKFSPGPLTYVL--KKSIKISRFVSGNLDTVAIRI 118 Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK---IG 175 P LI+ P+ PSAN S + S TN + L + + II +K IG Sbjct: 119 PANKTALSLIKASKVPIVAPSANISKRPSSTNFEMALKE-LNGLVRGIIKPEENKDFNIG 177 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPR 233 +EST+V + V ILRPG + + ++ + + + Y + +SPG + HY P+ Sbjct: 178 IESTVVGFDLKDNVLILRPGAITKKMIENELQGKYTVNYAETKMELEKSPGNIIEHYKPK 237 Query: 234 SQVRLRAIHVNPREALIRFGNVPI--KNIENAIISL-----NLSKTGKLKEAAFNLFNYM 286 V L N R L + + I +++ + + N++ L+E A NL+ + Sbjct: 238 IPVYLFKSQDNIRRYLNKDTKILITKATLKSYLFNFFWNKKNIAVFNTLEEYAQNLYKEL 297 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 + ++ I + + LG +INNR+++A++ R Sbjct: 298 -VNSENNYKQILSEFLKDEELGHSINNRIKKASSNR 332 >gi|238028508|ref|YP_002912739.1| Sua5/YciO/YrdC/YwlC [Burkholderia glumae BGR1] gi|237877702|gb|ACR30035.1| Sua5/YciO/YrdC/YwlC [Burkholderia glumae BGR1] Length = 359 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 86/328 (26%), Positives = 141/328 (42%), Gaps = 24/328 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A L AG +A PTETVYGL D+ +P A+ R+Y K RPA +P+I H+ Sbjct: 27 IDEAAARLAAGELVAFPTETVYGLGGDAESPQAVARIYAAKGRPANHPVIVHLPPGGDPG 86 Query: 72 KHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI-- 128 P + L + FWPGPLTL+L + I + + R P + + Sbjct: 87 YWVPALPADARRLIEAFWPGPLTLILKRAAH--IPDAVSGGQDSVGLRCPSHPVAQALLA 144 Query: 129 -----ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 +A PSANR G +S T +H+ + ++DGG +++G+ESTI+++ Sbjct: 145 AFSARRAGHGGVAAPSANRFGHVSPTTAQHVRDEF--GDAVHVLDGGAAEVGIESTILDL 202 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRL---- 238 +LRPG + + + + + P++ G LK+HYAPR+ + L Sbjct: 203 SRGFPA-LLRPGHVTPQQIAEVLGTLPRLPDGGDPGAPRASGTLKAHYAPRTPLVLLPFG 261 Query: 239 ------RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDS 292 A + A ++ + A L+ ++ D + Sbjct: 262 RLAPLLEAAAAAGEPVALVARASSAGAWAAAPGVHFVAAPEDPQAYARELYGLLRALDRA 321 Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAA 320 + I +P A+N+RL RAAA Sbjct: 322 SVTRILVEQLPGTPEWAAVNDRLGRAAA 349 >gi|225551793|ref|ZP_03772736.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia sp. SV1] gi|225371588|gb|EEH01015.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia sp. SV1] Length = 337 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 100/336 (29%), Positives = 165/336 (49%), Gaps = 18/336 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I S+ ++KA + + G + PTETVYG+ ++ N A++ ++ +KKRP NPL Sbjct: 1 MISTEIISSSQIQKAAKLIKMGELVVFPTETVYGIGANAYNEDAVKMIFLVKKRPINNPL 60 Query: 61 ICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I HV + +K+ + P +L L K F PGPLT VL + I + NL T R+ Sbjct: 61 IVHVDTVKKIKELSEYIPKSALMLIKKFSPGPLTYVL--KKSIKISRFVSGNLDTVAIRI 118 Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK---IG 175 P LI+ PL PSAN S + S TN + L + + II +K IG Sbjct: 119 PANKTALSLIKASKVPLVAPSANISKRPSSTNFEMALKE-LNGLVRGIIKPEENKDFNIG 177 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPR 233 +EST+V + V ILRPG + + ++ + + + Y + +SPG + HY P+ Sbjct: 178 IESTVVGFDLKDNVLILRPGAITKKMIENELQGKYTVNYAETKIELEKSPGNIIEHYKPK 237 Query: 234 SQVRLRAIHVNPREALIRFGNVPI--KNIENAIISL-----NLSKTGKLKEAAFNLFNYM 286 V L N R L + + I +++ + + N++ L+E A NL+ + Sbjct: 238 IPVYLFKSQDNIRRYLNKDTKILITKATLKSYLFNFFWDKKNITVFNTLEEYAQNLYKEL 297 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 + ++ I + + LG +INNR+++A++ R Sbjct: 298 -VNSENNYKQILSEFLKDEELGHSINNRIKKASSNR 332 >gi|78067422|ref|YP_370191.1| translation factor SUA5 [Burkholderia sp. 383] gi|77968167|gb|ABB09547.1| translation factor SUA5 [Burkholderia sp. 383] Length = 342 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 87/318 (27%), Positives = 140/318 (44%), Gaps = 24/318 (7%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL-S 80 G +A PTETVYGL D+ NP A+ R+Y K RPA +P+I H+ A P + Sbjct: 24 GQLVAFPTETVYGLGGDAANPEAVARIYAAKGRPANHPVIVHLPPGGDPGYWADDLPADA 83 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETY-------GH 133 L FWPGPLTL+L + I + + R P + + Sbjct: 84 QALIDAFWPGPLTLILKRHA--RIPDAVSGGQDSVGLRCPSHPVAQALLAAFSARRGGHG 141 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 +A PSANR G +S T +H+ + ++DGG S++G+ESTI+++ +LR Sbjct: 142 GVAAPSANRFGHVSPTTAQHVRDEF--GDTVHVLDGGASEVGIESTILDLSRGFPA-LLR 198 Query: 194 PGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQV----------RLRAIH 242 PG + + + + + + P++ G LK+HYAPR+ + L A Sbjct: 199 PGHVTPQQIADVLGRAPRLPDGSDATAPRASGTLKAHYAPRTPLALLPFDALEPLLAAAQ 258 Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302 + + A ++ + A +L+ ++ D + + I + Sbjct: 259 TDGERVALVARASRAGRWAQADGVHFVAAPEDPQAYARDLYGMLRALDRAQVARILVEKL 318 Query: 303 PNHGLGIAINNRLERAAA 320 P IA+N+RL RAAA Sbjct: 319 PETVEWIAVNDRLGRAAA 336 >gi|269860590|ref|XP_002650015.1| hypothetical protein EBI_24439 [Enterocytozoon bieneusi H348] gi|220066566|gb|EED44043.1| hypothetical protein EBI_24439 [Enterocytozoon bieneusi H348] Length = 334 Score = 266 bits (680), Expect = 5e-69, Method: Composition-based stats. Identities = 100/314 (31%), Positives = 160/314 (50%), Gaps = 26/314 (8%) Query: 24 PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS--VDPLSL 81 P+ IPTETVYGLA N + +Y+IK RP+ NPLI H+S+++M+K + P Sbjct: 24 PVVIPTETVYGLAGVINNDNILSNIYQIKGRPSDNPLIVHISNLNMLKSLIKETILPEYA 83 Query: 82 HLAKLFWPGPLTLVLDLLSTTDIHPLSTANL-KTACFRVPCG-FTKKLIETYGHPLAIPS 139 L K +WPGPLTL+ + ++ + N T R+P KLI+ G PLA PS Sbjct: 84 VLIKKYWPGPLTLIF--KANDNVSNIVKGNHMDTIAIRMPNNSKLLKLIDKLGIPLAAPS 141 Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEI 199 AN SGQ S T + H+L+ + ++ ID G GLESTI+++Q K + ILRPG + Sbjct: 142 ANTSGQPSPTEINHVLND-LGNKVETYIDDGKCLYGLESTILSMQNNK-ITILRPGIITK 199 Query: 200 ETLKRAISVELEYCVDETSTPQS-PGMLKSHYAPRSQVRLRAIHV-------------NP 245 E +++ + +++ ++ + PGM +HY+P+ V L N Sbjct: 200 EEIEKCLQKQVDLYTKISNINYTIPGMKYTHYSPKIDVYLFIGKDYNINMIKKAQHFKNK 259 Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305 + ++ ++ + + I + KT LKE A N F+ ++ + I P Sbjct: 260 KIGIMGSNDIIVHGFKYEEI-FYMGKT--LKECASNCFSGLRHF-EKKVDLIFIKGFPCI 315 Query: 306 GLGIAINNRLERAA 319 G+A+ +RLE+A+ Sbjct: 316 DEGVALMDRLEKAS 329 >gi|226321225|ref|ZP_03796758.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi 29805] gi|226233354|gb|EEH32102.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi 29805] Length = 337 Score = 265 bits (678), Expect = 6e-69, Method: Composition-based stats. Identities = 99/336 (29%), Positives = 165/336 (49%), Gaps = 18/336 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I S+ ++KA + + G + PTETVYG+ ++ N A++ ++ +KKRP NPL Sbjct: 1 MISTEIISSSQIQKAAKLIKMGELVVFPTETVYGIGANAYNEDAVKMIFLVKKRPINNPL 60 Query: 61 ICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I HV + +K+ + P +L L K F PGPLT VL + I + NL T R+ Sbjct: 61 IVHVDTVKKIKELSEYIPKSALMLIKKFSPGPLTYVL--KKSIKISRFVSGNLDTVAIRI 118 Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK---IG 175 P LI+ P+ PSAN S + S TN + L + + II +K IG Sbjct: 119 PANKTALSLIKASKVPIVAPSANISKRPSSTNFEMALKE-LNGLVRGIIKPEENKDFNIG 177 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPR 233 +EST+V + V ILRPG + + ++ + + + Y + +SPG + HY P+ Sbjct: 178 IESTVVGFDLKDNVLILRPGTITKKMIENELQGKYTVNYAETKMELEKSPGNIIEHYKPK 237 Query: 234 SQVRLRAIHVNPREALIRFGNVPI--KNIENAIISL-----NLSKTGKLKEAAFNLFNYM 286 V L N R L + + I +++ + + N++ L+E A NL+ + Sbjct: 238 IPVYLFKSQDNIRRYLNKDTKILITKATLKSYLFNFFWDKKNITVFNTLEEYAQNLYKEL 297 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 + ++ I + + LG +INNR+++A++ R Sbjct: 298 -VNSENNYKQILSEFLKDEELGHSINNRIKKASSNR 332 >gi|216264566|ref|ZP_03436558.1| putative Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi 156a] gi|221217952|ref|ZP_03589419.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi 72a] gi|225550010|ref|ZP_03770971.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi 118a] gi|215981039|gb|EEC21846.1| putative Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi 156a] gi|221192258|gb|EEE18478.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi 72a] gi|225369469|gb|EEG98921.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi 118a] Length = 337 Score = 265 bits (678), Expect = 7e-69, Method: Composition-based stats. Identities = 99/336 (29%), Positives = 165/336 (49%), Gaps = 18/336 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I S+ ++KA + + G + PTETVYG+ ++ N A++ ++ +KKRP NPL Sbjct: 1 MISTEIISSSQIQKAAKLIKMGELVVFPTETVYGIGANAYNEDAVKMIFLVKKRPINNPL 60 Query: 61 ICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I HV + +K+ + P +L L K F PGPLT VL + I + NL T R+ Sbjct: 61 IVHVDTVKKIKELSEYIPKSALMLIKKFSPGPLTYVL--KKSIKISRFVSGNLDTVAIRI 118 Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK---IG 175 P LI+ P+ PSAN S + S TN + L + + II +K IG Sbjct: 119 PANKTALSLIKASKVPIVAPSANISKRPSSTNFEMALKE-LNGLVRGIIKTEENKDFNIG 177 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPR 233 +EST+V + V ILRPG + + ++ + + + Y + +SPG + HY P+ Sbjct: 178 IESTVVGFDLKDNVLILRPGAITKKMIENELQGKYTVNYAETKMELEKSPGNIIEHYKPK 237 Query: 234 SQVRLRAIHVNPREALIRFGNVPI--KNIENAIISL-----NLSKTGKLKEAAFNLFNYM 286 V L N R L + + I +++ + + N++ L+E A NL+ + Sbjct: 238 IPVYLFKSQDNIRRYLNKDTKILITKATLKSYLFNFFWDKKNITVFNTLEEYAQNLYKEL 297 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 + ++ I + + LG +INNR+++A++ R Sbjct: 298 -VNSENNYKQILSEFLKDEELGHSINNRIKKASSNR 332 >gi|297620333|ref|YP_003708470.1| Sua5/YciO/YrdC/YwlC family protein [Waddlia chondrophila WSU 86-1044] gi|297375634|gb|ADI37464.1| Sua5/YciO/YrdC/YwlC family protein [Waddlia chondrophila WSU 86-1044] Length = 307 Score = 265 bits (678), Expect = 7e-69, Method: Composition-based stats. Identities = 90/309 (29%), Positives = 151/309 (48%), Gaps = 12/309 (3%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 R+A L +G +A+PTETVYGLA + P AI++++ +K RP+ NPLI HV I + Sbjct: 6 RQAIRMLLSGEVVALPTETVYGLAASLKFPEAIKKIFSLKGRPSDNPLIVHVGKIEQLSS 65 Query: 73 HA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETY 131 + + P LA+ FWPG LTL++D + + A L T R+P + + Sbjct: 66 YVTTFPPGFESLAEAFWPGALTLIID-ANKEMVPEAVRAGLSTVAVRIPSHAKTRQVLEE 124 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 L +PSAN SG+ S T +H++ ++ ++DGG + G+ESTI+ + + + I Sbjct: 125 TGALVMPSANLSGRPSATTAQHVIDDF--QDAAPVLDGGKCQQGVESTIMIFR-DTRWVI 181 Query: 192 LRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIR 251 R G + E + + ++ + T+ P PG HYAP + L+ + + +I Sbjct: 182 AREGAVTAEEIALVLGYAPDFS-ERTAKPICPGQHYKHYAPNA--VLKPLGKDQTGVVIG 238 Query: 252 FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSS-IPNHGLGIA 310 F + + ++ L + + A NL++ ++ D G PN GL Sbjct: 239 FSD---RKYPHSTALYILGDLSEPEIVAGNLYSVLRALDTDGVQEAFIDWDFPNEGLWRT 295 Query: 311 INNRLERAA 319 I RL +A+ Sbjct: 296 IRERLRKAS 304 >gi|257439052|ref|ZP_05614807.1| Sua5/YciO/YrdC/YwlC family protein [Faecalibacterium prausnitzii A2-165] gi|257198542|gb|EEU96826.1| Sua5/YciO/YrdC/YwlC family protein [Faecalibacterium prausnitzii A2-165] Length = 302 Score = 265 bits (678), Expect = 7e-69, Method: Composition-based stats. Identities = 93/304 (30%), Positives = 148/304 (48%), Gaps = 27/304 (8%) Query: 1 MQI-MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 M+ + + A+ KA + L G +A+PTETVYG+A D+RN A+ +++ K RP NP Sbjct: 6 MKTEILPAEGEAIAKAADLLRRGELVALPTETVYGIAADARNGAAVAKIFVAKGRPQDNP 65 Query: 60 LICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 LI HV+ M+ V + L F PGPLT+++ ++ A L T R Sbjct: 66 LIVHVTGPEMLPGLVSEVPERAQLLMAAFCPGPLTIIMPRGP--EVAAECCAGLDTVGIR 123 Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 +P + +I G A PSAN SG+ S TN + + + + +PLI+DGG +G+E Sbjct: 124 MPSHPVARAVIAQSGCAFAAPSANLSGKPSPTNAQDVFTD-MDGRLPLILDGGECDVGVE 182 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAISVELEYC------VDETSTPQSPGMLKSHYA 231 ST+++V EK + RPG + +E L+RA+ E+E + E + +SPGM HYA Sbjct: 183 STVISVVGEKP-TLFRPGHITLEDLERALGEEVEVSKAILEKLPEGAVVRSPGMKYKHYA 241 Query: 232 PRSQVRL-----------RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAF 280 P++ V L H + + + F K + + G + A Sbjct: 242 PKADVTLLDGTFEQFKAYVDAHADQNPSCLCFTGEAEKL---GWPCVEYGREGDGADQAK 298 Query: 281 NLFN 284 ++F Sbjct: 299 HIFR 302 >gi|172061583|ref|YP_001809235.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia ambifaria MC40-6] gi|171994100|gb|ACB65019.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia ambifaria MC40-6] Length = 342 Score = 265 bits (678), Expect = 7e-69, Method: Composition-based stats. Identities = 87/318 (27%), Positives = 139/318 (43%), Gaps = 24/318 (7%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL-S 80 G +A PTETVYGL D+ NP A+ R+Y K RPA +P+I H+ A P + Sbjct: 24 GQLVAFPTETVYGLGGDAANPEAVARIYAAKGRPANHPVIVHLPPGGDPGYWADDLPADA 83 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETY-------GH 133 L FWPGPLTL+L + I + + R P + + Sbjct: 84 QALIDAFWPGPLTLILKRHA--RIPDAVSGGQDSVGLRCPSHPVAQALLAAFSARRGGHG 141 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 +A PSANR G +S T +H+ + ++DGG S++G+ESTI+++ +LR Sbjct: 142 GVAAPSANRFGHVSPTTAQHVRDEF--GDTVHVLDGGASEVGIESTILDLSRGFPA-LLR 198 Query: 194 PGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQV----------RLRAIH 242 PG + + + + + P++ G LK+HYAPR+ + L A Sbjct: 199 PGHVTPRQIADVLGRAPRLPDGGDATAPRASGTLKAHYAPRTPLSLLPFDALEPLLAAAQ 258 Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302 + + A ++ + A +L+ ++ D + + I + Sbjct: 259 TDGERVALVARASRAGRWAQADGVHFVAAPEDPQAYARDLYGMLRALDRAQVARILVEKL 318 Query: 303 PNHGLGIAINNRLERAAA 320 P IA+N+RL RAAA Sbjct: 319 PETVEWIAVNDRLGRAAA 336 >gi|206561172|ref|YP_002231937.1| hypothetical protein BCAL2835 [Burkholderia cenocepacia J2315] gi|198037214|emb|CAR53135.1| conserved hypothetical protein [Burkholderia cenocepacia J2315] Length = 342 Score = 265 bits (678), Expect = 7e-69, Method: Composition-based stats. Identities = 88/318 (27%), Positives = 141/318 (44%), Gaps = 24/318 (7%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81 G +A PTETVYGL D+ NP A+ R+Y K RPA +P+I H+ A P Sbjct: 24 GQLVAFPTETVYGLGGDAANPEAVARIYAAKGRPANHPVIVHLPPGGDPGYWADDLPADA 83 Query: 82 H-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETY-------GH 133 H L FWPGPLTL+L + I + + R P + + Sbjct: 84 HALIDAFWPGPLTLILKRHA--RIPDAVSGGQDSVGLRCPSHPVAQALLAAFSARRGGHG 141 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 +A PSANR G +S T +H+ + ++DGG S++G+ESTI+++ +LR Sbjct: 142 GVAAPSANRFGHVSPTTAQHVRDEF--GDTVHVLDGGASEVGIESTILDLSRGFPA-LLR 198 Query: 194 PGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQV----------RLRAIH 242 PG + + + + + + + P++ G LK+HYAPR+ + L A Sbjct: 199 PGHVTPQQIADVLGRAPKLPDGSDATAPRASGTLKAHYAPRTPLALLPFDALEPLLAAAQ 258 Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302 + + A ++ + A +L+ ++ D + + I + Sbjct: 259 TDGERIALVARASRAGRWAQADGVHFVAAPEDPQAYARDLYGMLRALDRAQVARILVEKL 318 Query: 303 PNHGLGIAINNRLERAAA 320 P IA+N+RL RAAA Sbjct: 319 PETVEWIAVNDRLGRAAA 336 >gi|146307051|ref|YP_001187516.1| translation factor SUA5 [Pseudomonas mendocina ymp] gi|145575252|gb|ABP84784.1| translation factor SUA5 [Pseudomonas mendocina ymp] Length = 339 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 102/319 (31%), Positives = 156/319 (48%), Gaps = 14/319 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + L + + L +G +A+PTETVYGLA D+RN A+ +++++K+RP NPLI H++D S Sbjct: 28 TTDLDRCVQQLRSGNLLAMPTETVYGLAADARNGEAVAKVFQLKQRPDSNPLIVHLADAS 87 Query: 69 MVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 AS P L WPGPLTLVL + D+ TA + RVP + Sbjct: 88 QASNWASHIPAQAQVLMDACWPGPLTLVLP--ARDDVLRSVTAGQDSVALRVPAHPVARA 145 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L++ +G L PSANR IS T+ H+ + LI+DGG ++GLES+IV++ Sbjct: 146 LLQAFGDGLVAPSANRYMSISPTSAAHVAR-QFAESELLILDGGACQVGLESSIVSLLPG 204 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246 R+LR G L L++ + LE + ++PG + HYAP + + P+ Sbjct: 205 DSPRLLRHGMLGQARLEQVLGQALENRPG---SVRAPGQCRRHYAPGTPTSSFSELPRPQ 261 Query: 247 EALIRFGNVPI-KNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305 A G + + + +++LS G + A L+ + D I P Sbjct: 262 LADPDCGWIWCGQAHPSRGPAVDLS--GDPERYAAGLYAALYQLDALALRHIHIQLPPQS 319 Query: 306 GLGIAINNRLERA---AAP 321 A++ RL RA AAP Sbjct: 320 AAWAAVHERLSRACEPAAP 338 >gi|188591315|ref|YP_001795915.1| hypothetical protein RALTA_A0528 [Cupriavidus taiwanensis LMG 19424] gi|170938209|emb|CAP63195.1| conserved hypothetical protein, Sua5/YciO/YrdC/YwlC family; putative double-stranded RNA binding domain [Cupriavidus taiwanensis LMG 19424] Length = 329 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 86/324 (26%), Positives = 143/324 (44%), Gaps = 18/324 (5%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + L +A L+AG +A PTETVYGL D+ NP A+ R++ +K RP+ +P+I HV D + Sbjct: 8 AAELDEAVRLLEAGQLVAFPTETVYGLGADAENPAAVGRIFALKGRPSNHPVIVHVVDGA 67 Query: 69 MVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 + P + L FWPGPLTL+L + D + R P + Sbjct: 68 DIGYWTDDVPAAAQQLIDAFWPGPLTLILKRAAHIDAA--VAGGQDSIGLRCPSHPVAQA 125 Query: 128 I----ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + + +A PSAN+ GQ+S T +H+ + +++G ++G+ESTIV++ Sbjct: 126 LLSRFKRGRGGIAAPSANKFGQVSPTTAQHVREEF--GDAVYVLEGDGVEVGIESTIVDL 183 Query: 184 QCEKK---VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 + +LRPG + + L + + G LK+HYAP + + L Sbjct: 184 SRLDQGIGPVLLRPGAVTVGMLAQVLGEAPLPPDAAAPRA--SGTLKAHYAPHTPLLLAD 241 Query: 241 IHVNPREALIRFGNVPIKNIENAII----SLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296 + + + A + + G A L+ ++ D G + Sbjct: 242 AQAAAARLEALPADARVAWVGRAPLADQRCTWVQAPGDAAAYAQELYRLLRKLDRQGYTQ 301 Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320 + F +P + +RLERAAA Sbjct: 302 LVFEVLPEGQDWAGVRDRLERAAA 325 >gi|51598986|ref|YP_073174.1| hypothetical protein BG0756 [Borrelia garinii PBi] gi|51573557|gb|AAU07582.1| conserved hypothetical protein [Borrelia garinii PBi] Length = 337 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 101/335 (30%), Positives = 162/335 (48%), Gaps = 18/335 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I SN ++KA +F+ G + PTETVYG+ ++ N A++ ++ +KKR NPL Sbjct: 1 MISTEIIRSNQIQKAAKFIKTGELVVFPTETVYGIGANAYNEDAVKMIFLVKKRSIQNPL 60 Query: 61 ICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I HV + +K+ P +L L K F PGPLT VL + I + NL T R+ Sbjct: 61 IVHVDTVKKIKELTEYIPKSALMLIKRFSPGPLTYVL--KKSIKISRFVSGNLDTVAIRI 118 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK---IG 175 P LI+ P+A PSAN S + S TN + L + + II +K IG Sbjct: 119 PANKIALNLIKASKVPIAAPSANISKRPSATNFEMALKE-LNGLVRGIIKLEENKDFNIG 177 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPR 233 +EST++ + V ILRPG + + +++ + + Y + +SPG + HY P+ Sbjct: 178 IESTVIGFDLKDNVIILRPGAITKKMIEKELKGRYTVNYAETKIELEKSPGNIIEHYKPK 237 Query: 234 SQVRLRAIHVNPREALIRFGNVPI-KNIENAII------SLNLSKTGKLKEAAFNLFNYM 286 V L N R L + + I K N+ + N++ L+E A NL+ + Sbjct: 238 IPVYLFKSQDNIRRYLNKDTKILITKPTLNSYLFNFLWDKKNITVFNTLEEYAQNLYKEL 297 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 + ++ I + + LG +INNR+ +A++ Sbjct: 298 IKS-ENNYKQILSEFVKDEELGYSINNRIRKASSN 331 >gi|161523856|ref|YP_001578868.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia multivorans ATCC 17616] gi|189351383|ref|YP_001947011.1| putative translation factor [Burkholderia multivorans ATCC 17616] gi|160341285|gb|ABX14371.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia multivorans ATCC 17616] gi|189335405|dbj|BAG44475.1| putative translation factor [Burkholderia multivorans ATCC 17616] Length = 342 Score = 263 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 85/318 (26%), Positives = 139/318 (43%), Gaps = 24/318 (7%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLS 80 G +A PTETVYGL D+ +P A+ R+Y K RPA +P+I H+ A + + Sbjct: 24 GQLVAFPTETVYGLGGDAASPDAVARIYAAKGRPANHPVIVHLPPGGDPAYWAAELPADA 83 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETY-------GH 133 L FWPGPLTL+L I + + R P + + Sbjct: 84 QKLIDAFWPGPLTLILKRHP--RIPDAVSGGQDSVGLRCPSHPVAQALLAAFSARRGGHG 141 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 +A PSANR G +S T +H+ + ++DGG S++G+ESTI+++ +LR Sbjct: 142 GVAAPSANRFGHVSPTTAQHVRDEF--GDTVHVLDGGASEVGIESTILDLSRGFPA-LLR 198 Query: 194 PGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQV----------RLRAIH 242 PG + + + + + + P++ G LK+HYAPR+ + L A Sbjct: 199 PGHVTPQQIADVLGRAPRLPDGSDATAPRASGTLKAHYAPRTPLALLPFDALEPLLAAAQ 258 Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302 + + A ++ + A +L+ ++ D + + I + Sbjct: 259 ADGERVALVARASRAGRWAQADGVHFVAAPEDPQAYARDLYGMLRALDRAQVARILVEKL 318 Query: 303 PNHGLGIAINNRLERAAA 320 P IA+N+RL RAAA Sbjct: 319 PETVEWIAVNDRLGRAAA 336 >gi|121606749|ref|YP_984078.1| Sua5/YciO/YrdC/YwlC family protein [Polaromonas naphthalenivorans CJ2] gi|120595718|gb|ABM39157.1| translation factor SUA5 [Polaromonas naphthalenivorans CJ2] Length = 327 Score = 263 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 101/330 (30%), Positives = 154/330 (46%), Gaps = 17/330 (5%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 I TD A+ +A + AG + PTETVYGL D+ + A+ +++ K RPA +PLI Sbjct: 2 IRPGTDPQAIVEAARRIQAGALVGFPTETVYGLGADASSDAAVAGIFKAKGRPADHPLIV 61 Query: 63 HVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 HV+D S V +A SV + L + FWPGPLT++L + + ++ R P Sbjct: 62 HVADASQVSDYASSVPAFAARLMQAFWPGPLTVILPRREGVALA--AAGGQESIGLRCPA 119 Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 ++ G +A PSANR G++S T H+ + L++DGG +G+ES+I Sbjct: 120 HPVALAFLKACGTGVAGPSANRFGRVSPTTALHVAQEF--GDELLVLDGGPCAVGIESSI 177 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVR 237 V+ + V +LRPG L L+ A + E S P++ G L++HYAP ++VR Sbjct: 178 VDCTRGRPV-LLRPGVLTRAQLEAACGEPVLGKEDAQAAGSAPRASGTLEAHYAPNAKVR 236 Query: 238 L-RAIHVNPREALIRFGNVPIKNIENAII------SLNLSKTGKLKEAAFNLFNYMKIAD 290 L A + L+ I ++ L A LF ++ D Sbjct: 237 LMDAGAMQAALDLLGADAAHIAIYARTLLGIKSTRVLYRRMPDDALATAQQLFAVLRDFD 296 Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAA 320 GA I + P + +RL RAAA Sbjct: 297 AQGARLIWVETPPVACEWDGVRDRLGRAAA 326 >gi|221200181|ref|ZP_03573224.1| Sua5/YciO/YrdC family protein [Burkholderia multivorans CGD2M] gi|221206666|ref|ZP_03579678.1| Sua5/YciO/YrdC family protein [Burkholderia multivorans CGD2] gi|221173321|gb|EEE05756.1| Sua5/YciO/YrdC family protein [Burkholderia multivorans CGD2] gi|221180420|gb|EEE12824.1| Sua5/YciO/YrdC family protein [Burkholderia multivorans CGD2M] Length = 342 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 85/318 (26%), Positives = 139/318 (43%), Gaps = 24/318 (7%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLS 80 G +A PTETVYGL D+ +P A+ R+Y K RPA +P+I H+ A + + Sbjct: 24 GQLVAFPTETVYGLGGDAASPDAVARIYAAKGRPANHPVIVHLPPGGDPAYWAAELPADA 83 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETY-------GH 133 L FWPGPLTL+L I + + R P + + Sbjct: 84 QKLIDAFWPGPLTLILKRHP--RIPDAVSGGQDSVGLRCPSHPVAQALLAAFSARRGGHG 141 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 +A PSANR G +S T +H+ + ++DGG S++G+ESTI+++ +LR Sbjct: 142 GVAAPSANRFGHVSPTTAQHVRDEF--GDTVHVLDGGASEVGIESTILDLSRGFPA-LLR 198 Query: 194 PGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQV----------RLRAIH 242 PG + + + + + + P++ G LK+HYAPR+ + L A Sbjct: 199 PGHVTPQQIADVLGRAPRLPDGSDATAPRASGTLKAHYAPRTPLALLPFDALEPLLAAAQ 258 Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302 + + A ++ + A +L+ ++ D + + I + Sbjct: 259 ADGERVALVARASRAGRWAQADGVHFVAAPEDPQAYARDLYGMLRALDRAQVARILVEKL 318 Query: 303 PNHGLGIAINNRLERAAA 320 P IA+N+RL RAAA Sbjct: 319 PETVEWIAVNDRLGRAAA 336 >gi|332531641|ref|ZP_08407538.1| Sua5/YciO/YrdC/YwlC family protein [Hylemonella gracilis ATCC 19624] gi|332039004|gb|EGI75433.1| Sua5/YciO/YrdC/YwlC family protein [Hylemonella gracilis ATCC 19624] Length = 351 Score = 262 bits (671), Expect = 5e-68, Method: Composition-based stats. Identities = 98/355 (27%), Positives = 160/355 (45%), Gaps = 42/355 (11%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 I+ D +A+++A + L AG + +PTETVYGLA D+ + A+ ++Y K RPA +PLI Sbjct: 2 ILDGRDPSAVQRAAQALRAGELLGLPTETVYGLAADAGSDEAVAKIYAAKGRPAGHPLIV 61 Query: 63 HVSDISMVKKH-----ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 H++D S ++ A V + L + FWPGPLTL+L + + + Sbjct: 62 HLADESGAREGLAHFAAEVPAFARALMEAFWPGPLTLILPRRAGVAAA--AAGGQHSIGL 119 Query: 118 RVPCGFTKKLIETYGH-----PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172 R P + + LA PSAN G++S T H+ + LI+DGG Sbjct: 120 RCPAHPVAQAVLQAARSLGVLGLAAPSANLFGRVSPTTAAHVQAELGEGL--LILDGGPC 177 Query: 173 KIGLESTIVNVQCEKKVRILRPGGLEIETLKRAI---SVELEY-------CVDETSTPQS 222 ++G+ESTIV+ V +LRPG + + + ++ + P++ Sbjct: 178 EVGIESTIVDCTRGAPV-LLRPGQITRVRIDEVLLAAGTDMRLRSADEVQARTAQAAPRA 236 Query: 223 PGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAIIS--LNLSKTGKL----- 275 GML+SHYAPR++VRL R + + + + + + + L Sbjct: 237 SGMLESHYAPRAKVRLLDAVALQSALAARHSDAGAARLADEVQAPPVAVYARTSLQLPAG 296 Query: 276 ----------KEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 AA LF ++ D++G I + P+ + +RL RAAA Sbjct: 297 VVHRPMPVEAAVAAHELFAALRALDEAGVREIWVETPPDAPAWEGVMDRLSRAAA 351 >gi|293607071|ref|ZP_06689414.1| Sua5/YciO/YrdC/YwlC family protein [Achromobacter piechaudii ATCC 43553] gi|292814561|gb|EFF73699.1| Sua5/YciO/YrdC/YwlC family protein [Achromobacter piechaudii ATCC 43553] Length = 352 Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats. Identities = 92/327 (28%), Positives = 150/327 (45%), Gaps = 28/327 (8%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-AS 75 + L G A PTETVYGL D+++P A+ ++Y K RP+ +P+I H++ V A Sbjct: 20 QRLLDGELAAFPTETVYGLGADAQSPEAVAKIYAAKGRPSNHPVIVHIAPTGDVSYWAAD 79 Query: 76 VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT---KKLIETYG 132 V P + L FWPGPLTL+L I + + R P G Sbjct: 80 VPPEARLLIDAFWPGPLTLILKRAPH--IADTVSGGQDSIGIRCPSHPVAQALLAAFAAG 137 Query: 133 HP-----LAIPSANRSGQISITNVKHILSSSICKEIPL--IIDGGISKIGLESTIVNVQ- 184 P +A PSAN+ GQ+S T +H+ S + +++GG S++G+ESTI+++ Sbjct: 138 KPNGQGGVAAPSANKFGQVSPTRAEHVRSEFPDEVAAGMPVLEGGASEVGIESTILDLSR 197 Query: 185 ---CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241 V +LRPG + ++ + V++ + + P++ G LK+HYAPR+ + L + Sbjct: 198 LDRGAGPV-LLRPGHISAAQIEAVLGVQV--FAPDAAAPRASGTLKAHYAPRTPLELASD 254 Query: 242 HVNPREAL---IRFGNVPIKNIENAIISLNL-----SKTGKLKEAAFNLFNYMKIADDSG 293 A + G V + +L+ A L+ ++ D G Sbjct: 255 ERLRDIAQGRNLPSGKVVVVAYGEPPEALDARVQWQPVPADPARYAQALYGLLRDLDTQG 314 Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAA 320 + I + P A+N+R+ RAAA Sbjct: 315 YARIVVQAPPATDAWHAVNDRIGRAAA 341 >gi|260221970|emb|CBA31066.1| hypothetical protein Csp_C26690 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 352 Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats. Identities = 93/330 (28%), Positives = 143/330 (43%), Gaps = 36/330 (10%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS-----MVKKHASV 76 G + +PTETVYGL D+ +P A+ +++ K RP+ +PLI HV+ + A V Sbjct: 28 GGLLGLPTETVYGLGADASDPVAVGKIFNAKGRPSDHPLIVHVAAFDGGMGGVAHYCARV 87 Query: 77 DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP- 134 + L FWPGPLTL+L + + + R P + ++ T P Sbjct: 88 PAFAQQLMSAFWPGPLTLILPRKEG--VGEAAAGGQNSIGLRCPAHPVAQAVLATLRKPS 145 Query: 135 --------LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 +A PSAN+ G++S T H+ S + LI+DGG ++G+ESTI++ Sbjct: 146 DGGREVWGIAAPSANKFGRVSPTTAAHVHSEF--GDDLLILDGGPCEVGIESTIIDCTRG 203 Query: 187 KKVRILRPGGLEIETLKRAISVEL----EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242 V +LRPG + + ++ A +L E P++ G L SHYAP + VRL Sbjct: 204 APV-LLRPGSITAQQVEDACGRKLLSKEELLAQSQQAPRASGTLDSHYAPSATVRLMDAK 262 Query: 243 VNPREALIRFGNVPIKNIENAIISLN--LSKTGKLKE----------AAFNLFNYMKIAD 290 + G P + L L AA LF+ ++ D Sbjct: 263 ALQSALDLLSGTTPPDKRPTIALYHRSPLHVRSPLVTAHRMPSHAQPAAHELFSKLREMD 322 Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAA 320 G I + P+ + +RL RAAA Sbjct: 323 AQGVKLIWVEAPPDSPEWDGVRDRLTRAAA 352 >gi|219684274|ref|ZP_03539218.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia garinii PBr] gi|219672263|gb|EED29316.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia garinii PBr] Length = 335 Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats. Identities = 100/335 (29%), Positives = 163/335 (48%), Gaps = 18/335 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I SN ++KA + + G + PTETVYG+ ++ N A++ ++ +KKR NPL Sbjct: 1 MISTEIIRSNQIQKAAKLIKTGELVVFPTETVYGIGANAYNEDAVKMIFLVKKRSIQNPL 60 Query: 61 ICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I HV + +K+ + P +L L K F PGPLT VL + I + NL T R+ Sbjct: 61 IVHVDTVKKIKELSEYIPKSALMLIKRFSPGPLTYVL--KKSIKISRFVSGNLDTVAIRI 118 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK---IG 175 P LI+ P+A PSAN S + S TN + L + + II +K IG Sbjct: 119 PANKIALNLIKASKVPIAAPSANISKRPSATNFEMALKE-LNGLVRGIIKLEENKDFNIG 177 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPR 233 +EST++ + V ILRPG + + +++ + + + Y + +SPG + HY P+ Sbjct: 178 IESTVIGFDLKDNVIILRPGAITKKMIEKGLQGKYTVNYAETKIELEKSPGNMIEHYKPK 237 Query: 234 SQVRLRAIHVNPREALIRFGNVPI-KNIENAII------SLNLSKTGKLKEAAFNLFNYM 286 V L N R L + + I K N+ + N++ L+E A NL+ + Sbjct: 238 IPVYLFKNQDNIRRYLNKDTKILITKPTLNSYLFNFLWDKKNITVFNTLEEYAQNLYKEL 297 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 + ++ I + + LG +INNR+ +A++ Sbjct: 298 -VNSENSYKQILSEFVKDEELGYSINNRIRKASSN 331 >gi|300705060|ref|YP_003746663.1| hypothetical protein RCFBP_20897 [Ralstonia solanacearum CFBP2957] gi|299072724|emb|CBJ44077.1| conserved protein of unknown function, translation factor domain, SUA5 type [Ralstonia solanacearum CFBP2957] Length = 336 Score = 262 bits (670), Expect = 7e-68, Method: Composition-based stats. Identities = 99/328 (30%), Positives = 156/328 (47%), Gaps = 32/328 (9%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +A L+AG +A PTETVYGL D+ NP AI R+Y +K RP+ +P+I HV D + + Sbjct: 16 LDEAARRLEAGELVAFPTETVYGLGADAENPQAIARIYALKGRPSNHPVIVHVVDGADLT 75 Query: 72 KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI-- 128 A P ++L L + FWPGPLTL+L I + R P + + Sbjct: 76 YWADDLPGIALQLVEAFWPGPLTLILKRAPH--IPAAVAGGQDSIGLRCPSHPVAQALLS 133 Query: 129 --ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 + +A PSAN+ GQ+S T +H+ E +++G +G+ESTIV++ Sbjct: 134 RFKRGRGGIAAPSANKFGQVSPTTAQHVREEF--GEAVFVLEGDGVDVGIESTIVDLSRL 191 Query: 187 KK---VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 + +LRPG + E ++R V + + + P++ G L++HYAPR+ + L A Sbjct: 192 DQGIGPVLLRPGAITPEDIERVTGV--MPSLPDAAAPRASGTLRAHYAPRTPLYLLAAAD 249 Query: 244 NP-REALIRFG----------NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDS 292 P R A + G ++P + A + L + D Sbjct: 250 VPTRLAALPAGQRIVWVGAPVDLPSGCDQRAAPVTPAAYANALYALL-------RELDHG 302 Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAA 320 G +I ++P+ A+N+RL RAAA Sbjct: 303 GYHAIWVQTLPDTSAWAAVNDRLRRAAA 330 >gi|163848701|ref|YP_001636745.1| Sua5/YciO/YrdC/YwlC family protein [Chloroflexus aurantiacus J-10-fl] gi|222526643|ref|YP_002571114.1| Sua5/YciO/YrdC/YwlC family protein [Chloroflexus sp. Y-400-fl] gi|163669990|gb|ABY36356.1| Sua5/YciO/YrdC/YwlC family protein [Chloroflexus aurantiacus J-10-fl] gi|222450522|gb|ACM54788.1| Sua5/YciO/YrdC/YwlC family protein [Chloroflexus sp. Y-400-fl] Length = 351 Score = 261 bits (669), Expect = 7e-68, Method: Composition-based stats. Identities = 95/322 (29%), Positives = 150/322 (46%), Gaps = 26/322 (8%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 T A+ A E L G +A PTETVYGL + + A+ ++ K RPA +PLI H++ Sbjct: 8 TSPAAIAMAGELLRRGELVAFPTETVYGLGGHALDERAVAAIFTAKGRPANDPLIVHITA 67 Query: 67 ISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 + + A+V PL+ LA WPGPLTL++ + TA +T RVP Sbjct: 68 ATDLPLVAATVPPLAGRLAAACWPGPLTLIVPRHP--RVPLTVTAGRETVAVRVPSHPIA 125 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 ++L+ G P+A PSANR G S T H+L + + I +IDGG + IG+EST+++ Sbjct: 126 QELLRAAGVPVAAPSANRFGHTSPTTADHVL-ADLDGRIAAVIDGGATPIGIESTVLDCT 184 Query: 185 CEKKVRILRPGGLEIETLKRAIS---VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241 + +LRPGG+ +ETL I + + DE +PG+L+ HYAP ++ L + Sbjct: 185 TD-PPTLLRPGGISLETLTDLIGEVQLRSQPTADEAHGLTAPGLLERHYAPDHELWLFSG 243 Query: 242 HVNPREALIRFGNVPIKN--------IENAIISL---------NLSKTGKLKEAAFNLFN 284 + A +R + ++L +L T A L+ Sbjct: 244 KPDSVLARLRAETEAALARGLRVGLLLPEEDLALMHDLPVERESLGPTSDPAIIARRLYA 303 Query: 285 YMKIADDSGASSIAFSSIPNHG 306 ++ D+ + + G Sbjct: 304 ALRALDERQPDRMFTRDLDEAG 325 >gi|219685554|ref|ZP_03540371.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia garinii Far04] gi|219672953|gb|EED29975.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia garinii Far04] Length = 335 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 100/335 (29%), Positives = 163/335 (48%), Gaps = 18/335 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I SN ++KA + + G + PTETVYG+ ++ N A++ ++ +KKR NPL Sbjct: 1 MISTEIIKSNQIQKAAKLIKTGELVVFPTETVYGIGANAYNEDAVKMIFLVKKRSIQNPL 60 Query: 61 ICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I HV + +K+ + P +L L K F PGPLT VL + I + NL T R+ Sbjct: 61 IVHVDTVKKIKELSEYIPKSALMLIKRFSPGPLTYVL--KKSIKISRFVSGNLDTVAIRI 118 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK---IG 175 P LI+ P+A PSAN S + S TN + L + + II +K IG Sbjct: 119 PANKIALNLIKASKVPIAAPSANISKRPSATNFEMALKE-LNGLVRGIIKLEENKDFNIG 177 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPR 233 +EST++ + V ILRPG + + +++ + + + Y + +SPG + HY P+ Sbjct: 178 IESTVIGFDLKDNVIILRPGAITKKMIEKGLQGKYTVNYAETKIELEKSPGNMIEHYKPK 237 Query: 234 SQVRLRAIHVNPREALIRFGNVPI-KNIENAII------SLNLSKTGKLKEAAFNLFNYM 286 V L N R+ L + + I K N+ + N+ L+E A NL+ + Sbjct: 238 IPVYLFKSQDNIRKYLNKDTKILITKPTLNSYLFNFLWDKKNIIVFNTLEEYAQNLYKEL 297 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 + ++ I + + LG +INNR+ +A++ Sbjct: 298 -VNSENSYKQILSEFVKDEELGYSINNRIRKASSN 331 >gi|300692406|ref|YP_003753401.1| hypothetical protein RPSI07_2776 [Ralstonia solanacearum PSI07] gi|299079466|emb|CBJ52141.1| conserved protein of unknown function, translation factor domain, SUA5 type [Ralstonia solanacearum PSI07] Length = 336 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 98/328 (29%), Positives = 157/328 (47%), Gaps = 32/328 (9%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +A L+AG +A PTETVYGL D+ NP AI R+Y +K RP+ +P+I HV D + + Sbjct: 16 LDEAARRLEAGELVAFPTETVYGLGADAENPQAIARIYAMKGRPSNHPVIVHVVDGADLT 75 Query: 72 KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI-- 128 A P ++L L + FWPGPLTL+L I + R P + + Sbjct: 76 YWADDVPGIALQLVEAFWPGPLTLILKRAPH--IPAAVAGGQDSIGLRCPSHPVAQALLS 133 Query: 129 --ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 + +A PSAN+ GQ+S T +H+ + +++G +G+ESTIV++ Sbjct: 134 RFKRGRGGIAAPSANKFGQVSPTTAQHVRDEF--GDTVFVLEGDGVDVGIESTIVDLSRL 191 Query: 187 KK---VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVR-LRAIH 242 + +LRPG + E ++R V + + + P++ G L++HYAPR+ + L A Sbjct: 192 DEGIGPVLLRPGAITPEDIERVTGV--MPSLPDAAAPRASGTLRAHYAPRTPLYLLDAAD 249 Query: 243 VNPREALIRFG----------NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDS 292 V R A + G ++P + A + + L + D Sbjct: 250 VPARLAALPAGQRIAWVGAPVDLPSGCDQRAAPATPAAYANALYALL-------RDLDRC 302 Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAA 320 G +I ++P+ A+N+RL RAAA Sbjct: 303 GYHAIWVETLPDTSAWAAVNDRLRRAAA 330 >gi|134296828|ref|YP_001120563.1| translation factor SUA5 [Burkholderia vietnamiensis G4] gi|134139985|gb|ABO55728.1| translation factor SUA5 [Burkholderia vietnamiensis G4] Length = 345 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 85/315 (26%), Positives = 135/315 (42%), Gaps = 24/315 (7%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLS 80 G +A PTETVYGL D+ NP A+ R+Y K RPA +P+I H+ A V + Sbjct: 24 GQLVAFPTETVYGLGGDAANPEAVARIYAAKGRPANHPVIVHLPPGGDPGYWAADVPADA 83 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETY-------GH 133 L FWPGPLTL+L I + + R P + + Sbjct: 84 RALIDAFWPGPLTLILKRHP--RIPDAVSGGQDSVGLRCPSHPVAQALLAAFSARRGGHG 141 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 +A PSANR G +S T +H+ + ++DGG S++G+ESTIV++ +LR Sbjct: 142 GVAAPSANRFGHVSPTTAQHVRDEF--GDTVHVLDGGASEVGIESTIVDLSRGFPA-LLR 198 Query: 194 PGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQV----------RLRAIH 242 PG + + + + + + P++ G LK+HYAPR+ + L A Sbjct: 199 PGHVTPQQIADVLGRAPRLPDGSDATAPRASGTLKAHYAPRTPLALLPFDALEPLLAAAQ 258 Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302 + + A ++ A +L+ ++ D + + I + Sbjct: 259 ADGERVALVARASRAGRWAQADGVHFIAAPEDPHAYARDLYGMLRALDRAQVARILVEKL 318 Query: 303 PNHGLGIAINNRLER 317 P IA+N+RL R Sbjct: 319 PETVEWIAVNDRLGR 333 >gi|309791839|ref|ZP_07686326.1| Sua5/YciO/YrdC/YwlC family protein [Oscillochloris trichoides DG6] gi|308226161|gb|EFO79902.1| Sua5/YciO/YrdC/YwlC family protein [Oscillochloris trichoides DG6] Length = 347 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 105/342 (30%), Positives = 158/342 (46%), Gaps = 38/342 (11%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 ++ +++A L G +A PTETVYGL D+ NPTA+ R++ K RPA +PLI H++D+ Sbjct: 13 NTATIQEAATILATGGLVAFPTETVYGLGADALNPTAVGRIFAAKGRPAEDPLIVHLADL 72 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 S + + P+ HLA WPGPLTLVL + TA L+T RVP + Sbjct: 73 SDLARVTPHCPPVVAHLAAHCWPGPLTLVLPRGPA--VPYRVTAGLETVAVRVPAHPVAR 130 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LI G P+A PSANR G S T H+L + + I +++DGG + +G+EST++++ Sbjct: 131 ALIAAAGTPIAAPSANRFGHTSPTTAAHVL-ADLDGRIEMVLDGGPATLGVESTVLDL-S 188 Query: 186 EKKVRILRPGGLEIETLKRAIS-VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244 +LRPGG+ +ETL+ + V L T +PG+L HYAP + + L Sbjct: 189 APIPTLLRPGGVSLETLRDLLGEVALGGRAAPTGGQIAPGLLDRHYAPDNALHLCIGAAA 248 Query: 245 PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYM------------------ 286 + + + L + LF + Sbjct: 249 ACQGWLYHTAQTQLAAGRQVGL--LIPDDDVA-----LFADLAVDIEPLGPTSDPLVIAA 301 Query: 287 ------KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 + D I + + G+ AI +RL RAAA R Sbjct: 302 RLYAALRALDARQPDLILARDVGDVGIARAIRDRLTRAAAGR 343 >gi|257093416|ref|YP_003167057.1| Sua5/YciO/YrdC/YwlC family protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045940|gb|ACV35128.1| Sua5/YciO/YrdC/YwlC family protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 352 Score = 259 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 107/339 (31%), Positives = 157/339 (46%), Gaps = 33/339 (9%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 TD + +A L AG +A PTETVYG+ D+ NP A+ R++ K RPA +PLI H+ Sbjct: 3 TDQAVIDRAVALLQAGELVAFPTETVYGVGADAANPAAVGRIFTAKGRPADHPLIVHLPG 62 Query: 67 ISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125 + + A P + LA+ FWPGPLTL+L + + T T RVP Sbjct: 63 DGGLDRWARDIPTRAWELAEAFWPGPLTLILKRAPA--VPAIVTGGQDTVGVRVPAHPLA 120 Query: 126 KLIETYG----------HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 + +A PSANR G+IS T H+ + + +PLI+DGG +G Sbjct: 121 LALLRAYAEAGGGVDGLCGIAAPSANRFGRISPTEAAHV-RAELGDAVPLILDGGRCPVG 179 Query: 176 LESTIVNVQ--CEKKVRILRPGGLEIETLKRAISV--ELEYCVDETSTPQSPGMLKSHYA 231 +ESTIV++ ++ R+LRPG + E + I V E+ + TP+ G L +HYA Sbjct: 180 IESTIVDLTRGDDQAPRLLRPGRVTPEQIAAVIGVLPEIVTRPADDGTPRVSGSLAAHYA 239 Query: 232 PRSQVRLRAI-----------HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAF 280 P + +R R AL+ +P + +A + L + G A Sbjct: 240 PTTPLRFVTQADLVDVVDELRQTGRRCALLHHSQLPNASALHAGLRLPVDPQG----YAR 295 Query: 281 NLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 L+ ++ D A I IP AI +RL RAA Sbjct: 296 GLYAALRELDQMAADIILVEEIPAAPAWAAIADRLHRAA 334 >gi|301116637|ref|XP_002906047.1| conserved hypothetical protein [Phytophthora infestans T30-4] gi|262109347|gb|EEY67399.1| conserved hypothetical protein [Phytophthora infestans T30-4] Length = 363 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 95/365 (26%), Positives = 166/365 (45%), Gaps = 39/365 (10%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M + D+ A + L G +A PTETVYGL ++ N A+ ++E K RP +PL Sbjct: 1 MARLLKPDAEGFSFAAQQLRLGQLVAFPTETVYGLGANALNSEAVLAIFEAKARPLTDPL 60 Query: 61 ICHVSDISMVKKHASVDPLSLH----LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 I HV + K + P L + FWPGPLTL+ + ++ + +AN Sbjct: 61 IVHVPALDDAVKLVDMTPTGRQAFECLGRAFWPGPLTLIAKAVP--ELPLMLSANTGFVG 118 Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG---GIS 172 R P + L++ P+A PSANR G +S T KH++ E +I+ G Sbjct: 119 LRCPKHPIAQALLKEAKVPVAAPSANRFGHVSPTTAKHVMDDLGACENLSVIEATEEGCC 178 Query: 173 KIGLESTIVNVQCEK-KVRILRPGGLEIETLK--------------RAISVELEYCVDET 217 ++G+EST+V + E+ K+ + R GG+ + LK ++++ E + Sbjct: 179 EVGIESTVVKIVPEECKLIVFRRGGVSEQALKLVLEDNAELLGGQYEVVTIQKEAKMQTK 238 Query: 218 STPQSPGMLKSHYAPRSQVRLRAIHVNP-----------REALIRFGNVPIKNIENAIIS 266 Q+PG + +HYAP L R +I F + Sbjct: 239 EAQQAPGQMITHYAPDVDTYLYQADAAETMDASRKQDLSRWVVIDFHGKLSDLKDRVGGY 298 Query: 267 LNLSKTGKLKEAAFNLFNYMKIADD-SGASSIAFSSI--PNHGLGIAINNRLERAAAPRN 323 L+LS TG + EA+ +F+ ++ +++ G + + + H A+++R+ RAA+ + Sbjct: 299 LDLSPTGDVAEASQRIFDSLRWSENVQGVERVLITGVSSETHEQAAALHDRMYRAASGKQ 358 Query: 324 QSQRI 328 ++ ++ Sbjct: 359 RALQL 363 >gi|226228996|ref|YP_002763102.1| hypothetical protein GAU_3590 [Gemmatimonas aurantiaca T-27] gi|226092187|dbj|BAH40632.1| hypothetical protein [Gemmatimonas aurantiaca T-27] Length = 363 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 109/371 (29%), Positives = 163/371 (43%), Gaps = 61/371 (16%) Query: 1 MQIMSIT----DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56 M+++++ D + L A + L AG +A PTETVYGL ++ +P A+ R+Y K RPA Sbjct: 1 MRVVAVDAVHPDPDVLADAAQILRAGGLVAFPTETVYGLGANALDPDAVARIYAAKGRPA 60 Query: 57 MNPLICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115 NP+I HV+ M AS P+ + LA+ WPGPLTLV+ + + +A T Sbjct: 61 WNPVIMHVASADMAAGFASHWPISAARLAERCWPGPLTLVVPRADH--VPDIVSAGGDTV 118 Query: 116 CFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174 RVP LI G P+A PSANR Q+S T +H++ +S+ + L++DGG S + Sbjct: 119 ALRVPSHPVALALITAAGCPIAAPSANRFTQVSPTTAQHVV-ASLGDRVGLVLDGGPSTV 177 Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRA---ISVELEYCV----------------- 214 G+EST+V+ + V ILRPG L ETL+ A + V + + Sbjct: 178 GIESTVVDCTGD-TVTILRPGMLGRETLEAALDGLGVAVRHAAPRAVPHAASQALAEAST 236 Query: 215 ----DETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLS 270 + P+SPGM HYAPR+ V L A + ++L Sbjct: 237 HADDGTPAAPRSPGMADRHYAPRADVWLFAPEQQAEVSTALIARQEGSADSGPTMALLRG 296 Query: 271 -----KTGKLKEAAFNLFNYM-----------------KIADDSGASSIAFSSIPNHGLG 308 +G E + D AS + P+ Sbjct: 297 TVFGPSSGNGPEMM-----TLTMPQAPDAYARALYAALHEVDARRASLVLIEMPPDEPGW 351 Query: 309 IAINNRLERAA 319 + +RL RA+ Sbjct: 352 EGVRDRLTRAS 362 >gi|17545296|ref|NP_518698.1| hypothetical protein RSc0577 [Ralstonia solanacearum GMI1000] gi|17427588|emb|CAD14107.1| probable translation factor, sua5 type protein [Ralstonia solanacearum GMI1000] Length = 336 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 95/330 (28%), Positives = 154/330 (46%), Gaps = 24/330 (7%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + + L +A L+AG +A PTETVYGL D+ NP AI R+Y +K RP+ +P+I HV Sbjct: 10 MPPAARLDEAARRLEAGELVAFPTETVYGLGADAENPQAIARIYALKGRPSNHPVIVHVV 69 Query: 66 DISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 D + + A P ++L L + FWPGPLTL+L I + R P Sbjct: 70 DGADLTYWADDVPGIALQLVEAFWPGPLTLILKRAPH--IPAAVAGGQDSVGLRCPSHPV 127 Query: 125 KKLI----ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 + + + +A PSAN+ GQ+S T +H+ + +++G +G+ESTI Sbjct: 128 AQALLSRFKRGRGGIAAPSANKFGQVSPTTAQHVRDEF--GDAVFVLEGDGVDVGIESTI 185 Query: 181 VNVQCEKK---VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVR 237 V++ + +LRPG + E + R V + + + P++ G L++HYAPR+ + Sbjct: 186 VDLSRLDQGVGPVLLRPGAITPEDIGRVTGV--MPLLPDAAAPRASGTLRAHYAPRTPLY 243 Query: 238 LRAIHVNPREAL-------IRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD 290 L A P I + P+ + A + ++ D Sbjct: 244 LLAAADVPARLAALPAGRRIVWVGAPVDLPPGCDQHAAPATPAAYANALY---ALLRELD 300 Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAA 320 G +I ++P+ A+N+RL RAAA Sbjct: 301 RGGYHAIWVETLPDTSAWAAVNDRLRRAAA 330 >gi|52843166|ref|YP_096965.1| Sua5/YciO/YrdC/YwlC family protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52630277|gb|AAU29018.1| SUA5/yciO/yrdC family:Sua5/YciO/YrdC/YwlC protein family [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 322 Score = 258 bits (661), Expect = 7e-67, Method: Composition-based stats. Identities = 107/331 (32%), Positives = 162/331 (48%), Gaps = 15/331 (4%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I++ L +A L G P+AIPTETVYGLA N AIR ++E+K RP +PL Sbjct: 1 MSIITTN----LNRAIHDLQQGKPVAIPTETVYGLAAPINNNAAIRAVFEMKGRPLNHPL 56 Query: 61 ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I H++ + K V + LA FWPGPLTLV I+PL T T R Sbjct: 57 IVHIASNWDLHKLVEEVPEYAHQLASKFWPGPLTLVF-YCKKDQINPLITGGQSTIAIRC 115 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T+KL++ P+ PSAN G+IS T H+ S I+DGG ++G+ES Sbjct: 116 PDHPLTQKLLQKLNIPVVAPSANPFGKISPTTALHV-KQSFNDAELTILDGGRCRVGIES 174 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238 TIV+ +ILR G ++ +T+ I++ C + + + PG L SHY P+ + Sbjct: 175 TIVDATNPVSYQILRHGIIDEKTIAETIAIG---CSTQKNNIRVPGKLDSHYQPQKTLYY 231 Query: 239 --RAIHVNPREALIRFGNVPIKNIENAIISLNL-SKTG-KLKEAAFNLFNYMKIADDSGA 294 + ++ + I N + + NL G +++A++L+ +++AD S A Sbjct: 232 FDQYETLSEFCQKRKGTVYVIANRQPPGVETNLFHPLGMHPEKSAYDLYYQLRLADTSDA 291 Query: 295 SSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325 IA PN + R+ +A P +Q Sbjct: 292 ICIAIELPPNTSEWQGVRERILKAGFPYSQQ 322 >gi|116328292|ref|YP_798012.1| Sua5 family translation factor [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331018|ref|YP_800736.1| Sua5 family translation factor [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121036|gb|ABJ79079.1| Translation factor, SUA5 family [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124707|gb|ABJ75978.1| Translation factor, SUA5 family [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 314 Score = 258 bits (660), Expect = 9e-67, Method: Composition-based stats. Identities = 96/320 (30%), Positives = 159/320 (49%), Gaps = 19/320 (5%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 ITDS +A + L G + PTETVYG+ + + A +++YE+K RP NPLI HV Sbjct: 10 ITDSPL--EAAKILLEGGNVVFPTETVYGIGASAFDFKACKKIYEVKNRPFDNPLILHVE 67 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125 ++S +K + ++ + + + F PGP+T + T L TA L T R+P T Sbjct: 68 NLSSLKTYGNISEKAGLVFQNFSPGPITGIF----TKKNQDLFTAGLNTVALRIPSNPTT 123 Query: 126 KL-IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 +L + G P+A PSAN SG+ S+T +++IL + I+ G KIG+EST+++ Sbjct: 124 QLFLNLCGVPVAAPSANLSGKPSLTKIEYIL-EEFSGRVDCILKGEEPKIGIESTVIDFS 182 Query: 185 CEKKVRILRPGGLEIETLKRAIS--VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242 E V +LRPG ++ L + + +E + P+SPG+ HYAP +V L Sbjct: 183 SEPPV-LLRPGFVDRNDLLKILPDLKGIESFNELNKIPRSPGLKYRHYAPACKVVL---K 238 Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302 + + F + ++ + +S +E +++++ D G I Sbjct: 239 DSLKGISGNFAQIGFHFESESMFQILVSSN---EEYMKSIYSFFVECDRKGIKEAWCE-I 294 Query: 303 PNHGLG-IAINNRLERAAAP 321 P G G A+ NR+ +AA+ Sbjct: 295 PKDGNGKEALINRISKAASK 314 >gi|154297352|ref|XP_001549103.1| hypothetical protein BC1G_12080 [Botryotinia fuckeliana B05.10] gi|150858585|gb|EDN33777.1| hypothetical protein BC1G_12080 [Botryotinia fuckeliana B05.10] Length = 334 Score = 258 bits (660), Expect = 1e-66, Method: Composition-based stats. Identities = 88/249 (35%), Positives = 139/249 (55%), Gaps = 23/249 (9%) Query: 11 ALRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 ++ +A E+L +P+A PTETVYGL D+ A++ +Y+ K RP+ NPLI HV D++M Sbjct: 46 SVAEAAEYLKTQSIPVAFPTETVYGLGADATRSDAVKGIYKAKGRPSDNPLIIHVCDLTM 105 Query: 70 VK-------------KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 ++ + + + L K FWPGPLT++L S + + P TA L T Sbjct: 106 LRSLLTSTDNQSVDADFSEIPDIYKPLIKRFWPGPLTVLLPNPSPSKLAPEVTAGLPTFG 165 Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R+P LI G PLA PSAN S + S T +H+ + I +I+DGG ++G Sbjct: 166 ARMPSSPLALSLIRLAGVPLAAPSANASTKPSCTTAQHV-HHDLDGRIEIILDGGACQVG 224 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVE--LEYCVDETS----TPQSPGMLKSH 229 +EST+V+ C+ V +LRPGG+ I+ ++ E ++ D++ P++PGM H Sbjct: 225 VESTVVDGMCDPPV-VLRPGGVSIDEIRECPGWEGVVKGYKDQSEIGDKAPRAPGMKYKH 283 Query: 230 YAPRSQVRL 238 Y+P+++V L Sbjct: 284 YSPKAKVIL 292 >gi|311108227|ref|YP_003981080.1| SUA5 domain-containing protein [Achromobacter xylosoxidans A8] gi|310762916|gb|ADP18365.1| SUA5 domain protein [Achromobacter xylosoxidans A8] Length = 350 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 89/323 (27%), Positives = 148/323 (45%), Gaps = 28/323 (8%) Query: 21 AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPL 79 G A PTETVYGL D+ NP A+ ++Y K RP+ +P+I H++ + A V Sbjct: 24 DGELAAFPTETVYGLGADAENPQAVAKIYAAKGRPSNHPVIVHIAPQGDLSYWAAEVPQE 83 Query: 80 SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT---KKLIETYGHP-- 134 + L FWPGPLTL+L I + + R P G P Sbjct: 84 ARLLIDAFWPGPLTLILKRAPH--IVDTVSGGQDSIGIRCPSHPVAQALLAAFAAGKPNG 141 Query: 135 ---LAIPSANRSGQISITNVKHILSSSICKEIPL--IIDGGISKIGLESTIVNVQ----C 185 +A PSAN+ GQ+S T +H+ S + +++GG S++G+ESTI+++ Sbjct: 142 QGGVAAPSANKFGQVSPTRAEHVRSEFPEEVAAGMPVLEGGASEVGIESTILDLSRLDRG 201 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA---IH 242 V +LRPG + ++ + V++ + + P++ G LK+HYAPR+ + L + Sbjct: 202 AGPV-LLRPGHISAAQIEAVLGVQV--FAPDAAAPRASGTLKAHYAPRTALELATDARLR 258 Query: 243 VNPREALIRFGNVPIKNIENAIISLNL-----SKTGKLKEAAFNLFNYMKIADDSGASSI 297 + + G V + + +L+ + A L+ ++ D G + I Sbjct: 259 DVVQGQGLPEGKVVVVAYGDRPAALDARVQWQAVPADPARYAQALYGLLRDLDQQGYARI 318 Query: 298 AFSSIPNHGLGIAINNRLERAAA 320 + P A+N+R+ RAAA Sbjct: 319 IVQAPPATDDWHAVNDRIGRAAA 341 >gi|113866600|ref|YP_725089.1| putative translation factor (SUA5) [Ralstonia eutropha H16] gi|113525376|emb|CAJ91721.1| putative translation factor (SUA5) [Ralstonia eutropha H16] Length = 325 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 86/324 (26%), Positives = 144/324 (44%), Gaps = 18/324 (5%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + L +A L+AG +A PTETVYGL D+ NP A+ R++ +K RP+ +P+I HV D + Sbjct: 4 AAELDEAVRLLEAGQLVAFPTETVYGLGADAENPEAVARIFALKGRPSNHPVIVHVVDGA 63 Query: 69 MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 + V + L FWPGPLTL+L + IHP + R P + Sbjct: 64 DIGYWTDEVPEAAQQLIDAFWPGPLTLILKRAAH--IHPAVAGGQDSIGVRCPSHPVAQA 121 Query: 128 I----ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + + +A PSAN+ GQ+S T +H+ + +++G ++G+ESTIV++ Sbjct: 122 LLARFKRGRGGIAAPSANKFGQVSPTTAQHVRDEF--GDAVYVLEGDGVEVGIESTIVDL 179 Query: 184 QCEKK---VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 + +LRPG + + + + G LK+HYAP + + L Sbjct: 180 SRLDQGIGPVLLRPGAITAAMMAQVLGAAPLPPDAAAPRA--SGTLKAHYAPHTPLLLAD 237 Query: 241 IHVNPREALIRFGNVPIKNIENAIIS----LNLSKTGKLKEAAFNLFNYMKIADDSGASS 296 + + + + A + + A L+ ++ D G + Sbjct: 238 AQAASAQLASLPDDARVAWVGRAPLVDQRCTWVQAPADAAAYARELYRLLRKLDKQGYTQ 297 Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320 + F +P + +RLERAAA Sbjct: 298 LMFEVLPEGQDWAGVRDRLERAAA 321 >gi|119193304|ref|XP_001247258.1| hypothetical protein CIMG_01029 [Coccidioides immitis RS] Length = 736 Score = 257 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 82/251 (32%), Positives = 126/251 (50%), Gaps = 26/251 (10%) Query: 24 PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-------- 75 P+A PTETVYGL D+ A++ +Y K+RP+ NPLI HVS +++ Sbjct: 479 PVAFPTETVYGLGADATRSAAVQGIYRAKQRPSDNPLIVHVSSREQLERLLRPPGCPTLN 538 Query: 76 ---------VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125 + P+ L + FWPGPLT+++ + + P T+NL T R+P + Sbjct: 539 QNSLQTSSLIPPIYEPLIERFWPGPLTILIPNPKHSPLAPEVTSNLSTFGVRMPSSSLAR 598 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LI+ PLA PSAN S + S T +H+ + + I +I+DGG +G+EST+V+ Sbjct: 599 LLIKLADRPLAAPSANASTKPSPTTAQHVY-ADLHGRIDIILDGGPCGVGVESTVVD-GL 656 Query: 186 EKKVRILRPGGLEIETLKRAISVEL------EYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 ILRPGG+ IE ++ E + + TP++PGM HY+PR++V L Sbjct: 657 NHPPAILRPGGVGIEEIRACRGWEDVRVGYKDGALPGKMTPRAPGMKYRHYSPRAKVVLF 716 Query: 240 AIHVNPREALI 250 + Sbjct: 717 ETSQEMPSVAL 727 >gi|258614609|ref|ZP_05712379.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium DO] Length = 231 Score = 257 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 86/234 (36%), Positives = 129/234 (55%), Gaps = 9/234 (3%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ D L++A E L G +A PTETVYGL ++ P A+++++ +K RP NPL Sbjct: 1 METKR-YDETELQEAAEALKEGELVAFPTETVYGLGANALLPNAVKKVFSVKGRPQDNPL 59 Query: 61 ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I HV+ VK++ P + + K FWPGPLTL+ + T + + T L TA FR+ Sbjct: 60 IVHVASFEQVKEYVDNFHPAAEKIVKNFWPGPLTLIFKIKKDT-LPSVVTGGLSTAAFRI 118 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T ++IE G PL PSAN SG+ S T H+ + +I IID G ++IG+ES Sbjct: 119 PDNKKTLEVIELSGVPLVGPSANTSGKPSPTTADHVY-HDLQGKITGIIDDGATRIGVES 177 Query: 179 TIVNVQCEKK-VRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKS 228 T++++ ILRPG + E ++ I + ++ V E TP++PGM Sbjct: 178 TVLDLSDPTAMPMILRPGAVTKEQIEAVIESPVAIDQHLVKENETPKAPGMKYK 231 >gi|254709554|ref|ZP_05171365.1| Sua5/YciO/YrdC/YwlC protein family [Brucella pinnipedialis B2/94] gi|261317082|ref|ZP_05956279.1| Sua5/YciO/YrdC/YwlC family protein [Brucella pinnipedialis B2/94] gi|261296305|gb|EEX99801.1| Sua5/YciO/YrdC/YwlC family protein [Brucella pinnipedialis B2/94] Length = 242 Score = 257 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 100/235 (42%), Positives = 139/235 (59%), Gaps = 7/235 (2%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D A+ +A E L G +AIPTETVYGLA D+ N + ++ K RP NPLI HV I Sbjct: 8 DDGAVLRAVEVLRRGGLVAIPTETVYGLAADAANGEGVAGIFAAKGRPQFNPLIAHVDGI 67 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS----TTDIHPLSTANLKTACFRVPCGF 123 +M ++ + DP+S LA+ FWPGPLT+VL L IHPL TA L T R+P G Sbjct: 68 AMAGRYVAFDPVSRRLAEAFWPGPLTIVLPLKERQDTERPIHPLVTAGLSTLAVRMPHGR 127 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + +I P+A PSAN SG+IS T+ + + I LI+D G +G+ESTIV V Sbjct: 128 VRDVITALDSPVAAPSANTSGRISPTSAAAVAGD-LGGRIDLILDAGPCGVGVESTIVKV 186 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238 ++ V +LRPGGL E ++ + +L + + Q+PGM++SHYAP + +RL Sbjct: 187 DGDQ-VHLLRPGGLAAEEIEAFLGQKLRRA-EHAAAIQAPGMMESHYAPDASMRL 239 >gi|167378326|ref|XP_001734759.1| sua5 [Entamoeba dispar SAW760] gi|165903590|gb|EDR29072.1| sua5, putative [Entamoeba dispar SAW760] Length = 289 Score = 257 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 87/241 (36%), Positives = 123/241 (51%), Gaps = 10/241 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 DS + A + + G + PTETVYGL D P AI +++++K RP NPLICH+SDI Sbjct: 28 DSKLITPAAKIIQQGGLVCFPTETVYGLGADVFQPNAINQIFKVKGRPNDNPLICHISDI 87 Query: 68 SMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 M+ K A V + L K FWPG LT++ T + TA L T R+P Sbjct: 88 EMLNKLAAHVSEDAHKLIKRFWPGALTIIFPRNET--VPNEVTAGLNTVGVRMPSHPIAY 145 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 + I+ P+A PSAN S + S T +H + + I +IIDGG IG+EST++ + Sbjct: 146 EFIKQCKTPIAAPSANLSTKPSPTIGRHCI-DDLNGRIEMIIDGGACDIGVESTVL-LLG 203 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDET----STPQSPGMLKSHYAPRSQVRLRAI 241 + ILRPGG+ +E L+ I Y + + P +PGM HYAP + Sbjct: 204 NEHPTILRPGGVTLEMLREVIPSTQVYKMSTNLSLEAKPPTPGMKYRHYAPSVDTIVITG 263 Query: 242 H 242 Sbjct: 264 D 264 >gi|317405862|gb|EFV86145.1| translation factor [Achromobacter xylosoxidans C54] Length = 348 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 91/326 (27%), Positives = 146/326 (44%), Gaps = 30/326 (9%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVD 77 L AG +A PTETVYGL D+ NP A+ +Y K RP+ +P+I H++ + A V Sbjct: 20 LLAGELVAFPTETVYGLGADAENPRAVGSIYAAKGRPSNHPVIVHIAPQGDLSYWAAEVP 79 Query: 78 PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT---KKLIETYGHP 134 P + L FWPGPLTL+L I + + R P G P Sbjct: 80 PEARLLIDAFWPGPLTLILKRAPH--IADTVSGGQDSIGIRCPSHPVAQALLAAFAAGKP 137 Query: 135 -----LAIPSANRSGQISITNVKHILSSSICKEIPL--IIDGGISKIGLESTIVNVQ--- 184 +A PSAN+ GQ+S T H+ + +++GG S++G+ESTI+++ Sbjct: 138 NGQGGVAAPSANKFGQVSPTRADHVRGEFPDEVAAGMPVLEGGASEVGIESTILDLSRLD 197 Query: 185 -CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 V +LRPG + ++ + V++ + + P++ G LK+HYAPR+ + L + Sbjct: 198 RGAGPV-LLRPGHISAAQIEAVLGVQV--FAPDAAAPRASGTLKAHYAPRTALELASDAR 254 Query: 244 ---------NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGA 294 P ++ P + I A L+ ++ D G Sbjct: 255 LQAALQGRGLPPGKVVVVAYAPPPAACDTRIQWQ-QVPADPARYAQALYALLRDLDGQGF 313 Query: 295 SSIAFSSIPNHGLGIAINNRLERAAA 320 + I + P+ A+N+R+ RAAA Sbjct: 314 ARIIVQAPPDSEAWHAVNDRIGRAAA 339 >gi|33592619|ref|NP_880263.1| hypothetical protein BP1528 [Bordetella pertussis Tohama I] gi|33572265|emb|CAE41817.1| conserved hypothetical protein [Bordetella pertussis Tohama I] gi|332382036|gb|AEE66883.1| hypothetical protein BPTD_1510 [Bordetella pertussis CS] Length = 350 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 93/324 (28%), Positives = 142/324 (43%), Gaps = 25/324 (7%) Query: 18 FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77 L AG A PTETVYGL D+ NP A+ R+Y K RP+ +P+I H++ V AS Sbjct: 19 CLLAGELAAFPTETVYGLGADAENPQAVARIYAAKGRPSNHPVIVHIAPEGDVDYWASDV 78 Query: 78 PLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY--GH 133 P + L + FWPGPLTL+L + + R P + L+ + G Sbjct: 79 PAAARQLIQAFWPGPLTLILKRAPHIGAA--VSGGQDSIGIRCPSHPVAQALLRAFAAGK 136 Query: 134 P-----LAIPSANRSGQISITNVKHILSSSICKEIPL--IIDGGISKIGLESTIVNVQCE 186 P +A PSAN G +S T +H+ + + ++DGG +++G+ESTI+++ Sbjct: 137 PNGQGGVAAPSANTFGHVSPTRAEHVRAEFPREVAAGMPVLDGGDAEVGIESTIIDLSRL 196 Query: 187 KK---VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 + +LRPG + + + + + G LK+HYAPR+ + L Sbjct: 197 DQGVGPVLLRPGHISAAQVAAVLGMPVARPDAAAPRA--SGTLKAHYAPRTPLELLDAAQ 254 Query: 244 NPREALIRFGNVPIKNIENAIISLNLS-------KTGKLKEAAFNLFNYMKIADDSGASS 296 PR V + A LS A L+ ++ D G + Sbjct: 255 LPRALAAAPAGVRQAVVALAPAPAGLSADVHWRMAPAGPARYAQALYALLRELDRQGYAR 314 Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320 I P G A+N+R+ RAAA Sbjct: 315 ILVEQPPRSGDWDAVNDRIGRAAA 338 >gi|322708850|gb|EFZ00427.1| translation initiation protein Sua5 [Metarhizium anisopliae ARSEF 23] Length = 437 Score = 256 bits (656), Expect = 3e-66, Method: Composition-based stats. Identities = 90/254 (35%), Positives = 134/254 (52%), Gaps = 16/254 (6%) Query: 11 ALRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 AL A E+L P+A PTETVYGL D+ +++ +Y K RP+ NPLI HV D+ M Sbjct: 42 ALEPAAEYLRTKDTPVAFPTETVYGLGADATRSASVKGIYSAKGRPSDNPLIVHVCDLDM 101 Query: 70 VKKHA------SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CG 122 ++ ++ L K FWPGPLT++L + + P TA L + R+P Sbjct: 102 LRTLLGSRGQDAIPARYQSLVKKFWPGPLTILLPNPDPSPLAPEVTAGLDSFGVRMPSSP 161 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 LI+ G PLA PSAN S + S T +H+ + I +I+DGG ++G+EST+V+ Sbjct: 162 LALTLIKLAGVPLAAPSANASTKPSPTTAQHV-KDDLDGRIEMILDGGSCQVGVESTVVD 220 Query: 183 VQCEKKVRILRPGGLEIETLKRAISVE------LEYCVDETSTPQSPGMLKSHYAPRSQV 236 C+ V +LRPGG+ I+ L+ E + + + P++PGM HY+PR++V Sbjct: 221 GLCDPPV-VLRPGGVGIDELRSCPGWEHVVKAYKDQSEEGKAAPRAPGMKYKHYSPRARV 279 Query: 237 RLRAIHVNPREALI 250 L A I Sbjct: 280 VLYESSYENGRAGI 293 Score = 72.4 bits (177), Expect = 9e-11, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 1/83 (1%) Query: 239 RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIA 298 ++ + + G + + E ++ + + A LF+ ++ D GA I Sbjct: 351 QSGQHDEMPYDVCAGELQNEQGETVGQVFDIGLGQETRGIAQGLFSALRELDRRGADVIF 410 Query: 299 FSSIPNH-GLGIAINNRLERAAA 320 I + + A+ NRL +AA+ Sbjct: 411 VDGIDDELDIAAAVMNRLRKAAS 433 >gi|121596222|ref|YP_988118.1| translation factor SUA5 [Acidovorax sp. JS42] gi|120608302|gb|ABM44042.1| translation factor SUA5 [Acidovorax sp. JS42] Length = 332 Score = 256 bits (656), Expect = 3e-66, Method: Composition-based stats. Identities = 100/326 (30%), Positives = 157/326 (48%), Gaps = 21/326 (6%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 +++ A + L G + +PTETVYGLA D+ N A+ +++ K RPA +PLI HV+D + + Sbjct: 10 SVQAAAQALARGELLGLPTETVYGLAADADNDAAVAQIFAAKGRPASHPLIVHVADAAAI 69 Query: 71 KKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK---- 125 ++A PL + L FWPGPLTL+L L + ST + R P Sbjct: 70 TRYAKEVPLFAQQLIDAFWPGPLTLILPRLPHAAVA--STGGQDSVGLRCPAHPVAHAVL 127 Query: 126 KLIETYGHP---LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 + + P +A PSAN G++S T +H+ + L++DGG +G+ESTI++ Sbjct: 128 QACQRLEPPVWGVAAPSANHFGRVSPTTAQHVAEEF--GDDLLVLDGGACTVGIESTIID 185 Query: 183 VQCEKKVRILRPGGLEIETLKRAIS-VELEYCVDETSTPQSPGMLKSHYAPRSQVRL-RA 240 V +LRPG + E ++RA L TP++ G L +HYAP ++VRL A Sbjct: 186 CTRGVPV-LLRPGAISREDVQRACGQRPLSKEELPALTPRASGTLLAHYAPTARVRLMDA 244 Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSK------TGKLKEAAFNLFNYMKIADDSGA 294 + ++ I A + SK A LF ++ D++G Sbjct: 245 KQLQAGLDVLGADAAHIAVYARAPLRAASSKILVRRMPDDAAATAQQLFAALRGFDEAGV 304 Query: 295 SSIAFSSIPNHGLGIAINNRLERAAA 320 I + P+ + +RL+RAAA Sbjct: 305 KLIWIETPPDAPAWEGVRDRLQRAAA 330 >gi|303390839|ref|XP_003073650.1| translation factor [Encephalitozoon intestinalis ATCC 50506] gi|303302797|gb|ADM12290.1| translation factor [Encephalitozoon intestinalis ATCC 50506] Length = 332 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 98/315 (31%), Positives = 151/315 (47%), Gaps = 28/315 (8%) Query: 24 PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS--VDPLSL 81 + +PTETVYGLA + N A+ R++ +K RPA NPLI +S + M+++ + Sbjct: 21 VVVVPTETVYGLAANIWNLRAVERIFALKGRPANNPLIAGISSVQMLEEIVEGPIPLQYK 80 Query: 82 HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSA 140 L + FWPGPLTL+ S ++ P+ L T R+P K+IE G PL IPSA Sbjct: 81 KLIENFWPGPLTLLF--KSKDNVSPIVRGGLNTIAVRMPGSKLLLKIIERLGAPLVIPSA 138 Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200 N SG+ S T ++H++ E+ L+IDGG S IG+ESTIV + ++++LRPGG+ +E Sbjct: 139 NISGRPSPTTIEHVI-EDFGDEVKLMIDGGPSSIGVESTIVQ-YVDGRLQVLRPGGITVE 196 Query: 201 TLKRAISVELEYCVDE-TSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKN 259 +K + E+ +E + HY+P+S + L + I N Sbjct: 197 RIKDVVDCEVIVKKNEWGGKEK----RHKHYSPKSPLVLFKGRQEDIKDGILKYISESSN 252 Query: 260 IENAIISLNLSKT---------------GKLKEAAFNLFNYMKIADDSGASSIAFSSIPN 304 I ++L+ K N F ++ D I + + Sbjct: 253 IARVGVALHSGMDLKIFSDVKVDIFDMGDDKKNICKNFFRGIRKLDKVN-DIILVAGMDC 311 Query: 305 HGLGIAINNRLERAA 319 G AI +RLE+AA Sbjct: 312 DEQGHAIMDRLEKAA 326 >gi|222112449|ref|YP_002554713.1| sua5/ycio/yrdc/ywlc family protein [Acidovorax ebreus TPSY] gi|221731893|gb|ACM34713.1| Sua5/YciO/YrdC/YwlC family protein [Acidovorax ebreus TPSY] Length = 332 Score = 256 bits (655), Expect = 4e-66, Method: Composition-based stats. Identities = 100/326 (30%), Positives = 158/326 (48%), Gaps = 21/326 (6%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 +++ A + L G + +PTETVYGLA D+ N A+ +++ K RPA +PLI HV+D + + Sbjct: 10 SVQAAAQALARGELLGLPTETVYGLAADADNDAAVAQIFAAKGRPASHPLIVHVADAAAI 69 Query: 71 KKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK---- 125 ++A PL + L FWPGPLTL+L L+ + ST + R P Sbjct: 70 TRYAKEVPLFAQQLIDAFWPGPLTLILPRLAHAAVA--STGGQDSVGLRCPAHPVAHAVL 127 Query: 126 KLIETYGHP---LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 + + P +A PSAN G++S T +H+ + L++DGG +G+ESTI++ Sbjct: 128 QACQRLEPPVWGVAAPSANHFGRVSPTTAQHVAEEF--GDDLLVLDGGACTVGIESTIID 185 Query: 183 VQCEKKVRILRPGGLEIETLKRAIS-VELEYCVDETSTPQSPGMLKSHYAPRSQVRL-RA 240 V +LRPG + E ++RA L TP++ G L +HYAP ++VRL A Sbjct: 186 CTRGVPV-LLRPGAISREDVQRACGQRPLSKEELPALTPRASGTLLAHYAPTARVRLMDA 244 Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSK------TGKLKEAAFNLFNYMKIADDSGA 294 + ++ I A + SK A LF ++ D++G Sbjct: 245 KQLQAGLDVLGADAAHIAVYARAPLRAASSKILVRRMPDDAAATAQQLFAALRGFDEAGV 304 Query: 295 SSIAFSSIPNHGLGIAINNRLERAAA 320 I + P+ + +RL+RAAA Sbjct: 305 KLIWIETPPDAPAWEGVRDRLQRAAA 330 >gi|156062334|ref|XP_001597089.1| hypothetical protein SS1G_01283 [Sclerotinia sclerotiorum 1980] gi|154696619|gb|EDN96357.1| hypothetical protein SS1G_01283 [Sclerotinia sclerotiorum 1980 UF-70] Length = 459 Score = 256 bits (655), Expect = 4e-66, Method: Composition-based stats. Identities = 87/248 (35%), Positives = 135/248 (54%), Gaps = 23/248 (9%) Query: 12 LRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 + +A E+L +P+A PTETVYGL D+ A++ +Y+ K RP+ NPLI HV D++M+ Sbjct: 47 IAEAAEYLKTKSIPVAFPTETVYGLGADATRSDAVKGIYKTKGRPSDNPLIIHVCDLTML 106 Query: 71 K-------------KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 + + + L K FWPGPLT++L S + + P TA L+T Sbjct: 107 RSLLSSTENQSSGADFPEIPEIYKPLIKCFWPGPLTILLPNPSPSKLAPEVTAGLQTFGA 166 Query: 118 RVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P LI G PLA PSAN S + S T +H+ + I +I+DGG ++G+ Sbjct: 167 RMPSSPLALSLIRLAGVPLAAPSANASTKPSCTTAEHVY-HDLNGRIEIILDGGACQVGV 225 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETL------KRAISVELEYCVDETSTPQSPGMLKSHY 230 EST+V+ C+ V +LRPGG+ I+ + +R + + P++PGM HY Sbjct: 226 ESTVVDGMCDPPV-VLRPGGVSIDEIRGCHGWERVVKGYKDQSEIGDKAPRAPGMKYKHY 284 Query: 231 APRSQVRL 238 +P+++V L Sbjct: 285 SPKAKVIL 292 Score = 78.2 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 3/75 (4%) Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305 + + G+ P + + L +K+ A LF+ ++ D G I I + Sbjct: 382 KPWIKDLGDQPTGWHVADCLKIALGSE--VKDIAHGLFSALRELDQKGCDVIFVEGIKDE 439 Query: 306 G-LGIAINNRLERAA 319 G + A+ NRL +AA Sbjct: 440 GNIAAAVMNRLRKAA 454 >gi|307611858|emb|CBX01573.1| hypothetical protein LPW_32601 [Legionella pneumophila 130b] Length = 322 Score = 256 bits (655), Expect = 4e-66, Method: Composition-based stats. Identities = 106/331 (32%), Positives = 161/331 (48%), Gaps = 15/331 (4%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I++ L +A L G P+AIPTETVYGLA N AIR ++E+K RP +PL Sbjct: 1 MSIITTN----LNRAIHDLQQGKPVAIPTETVYGLAAPINNNAAIRAVFEMKSRPLNHPL 56 Query: 61 ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I H++ + V + LA FWPGPLTLV I+PL T T R Sbjct: 57 IVHIASNWDLHDLVEEVPEYAHQLADKFWPGPLTLVF-HCKKDQINPLITGGQSTIAIRC 115 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T+KL++ P+ PSAN G+IS T H+ S I+DGG ++G+ES Sbjct: 116 PDHPLTQKLLQKLNIPVVAPSANPFGKISPTTALHV-KQSFNDAELTILDGGRCRVGIES 174 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238 TIV+ +ILR G ++ +T+ I++ C + + + PG L SHY P+ + Sbjct: 175 TIVDATNPDSYQILRHGIIDEKTIAETIAIG---CSTQKNDIRVPGKLDSHYQPQKTLYY 231 Query: 239 --RAIHVNPREALIRFGNVPIKNIENAIISLNL-SKTG-KLKEAAFNLFNYMKIADDSGA 294 + ++ + I N + + NL G +++A++L+ +++AD S A Sbjct: 232 FDQYETLSEFCQKRKGTVYVIANRQPPGVETNLFHPLGMHPEKSAYDLYYQLRLADTSDA 291 Query: 295 SSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325 IA PN + R+ +A P +Q Sbjct: 292 ICIAIELPPNTSEWQGVRERILKAGFPYSQQ 322 >gi|189911316|ref|YP_001962871.1| SUA5 family translation factor [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775992|gb|ABZ94293.1| Translation factor, SUA5 family [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] Length = 338 Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats. Identities = 101/345 (29%), Positives = 157/345 (45%), Gaps = 36/345 (10%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ + +D +R + + G + PTETV+G+ S N A R+Y+IK RP+ NPL Sbjct: 1 MKTLISSD---VRLLADLIRKGGVVVFPTETVFGIGAASDNEDACLRIYQIKGRPSDNPL 57 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 I H S I +KK V+ ++ L F PGP TLVL + L T R+P Sbjct: 58 IAHFSSIDAIKKVCYVNEVANQLLCEFSPGPFTLVLPKTD----PKIFPKQLPTLAVRIP 113 Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 ++ IE G P++ PSAN SG+ S+T + ++ + I+ +G+EST Sbjct: 114 KNPVIREWIEACGSPISAPSANLSGRPSLTRMTDVVR-YFDGIVDGILIAEEPNLGIEST 172 Query: 180 IVNVQCEKKVRILRPGGLEIETLKR-----AISVELEYCVDETS--------TPQSPGML 226 ++ + E V +LRPG +E + L+R I E++ ++ P SPGM Sbjct: 173 VLGLTTEVPV-LLRPGSIESQALRRFLPNLVIPNEIKSKDSKSEDSKTNQSFVPLSPGMK 231 Query: 227 KSHYAPRSQVRLRAIH----------VNPREALIRFGNVPIKNIENAIISLNLSKTGKLK 276 HYAP ++V L ++P+ A I F E + L + Sbjct: 232 YKHYAPNAKVVLLETEIFLSTFSKQGMDPKFAWIGFSFGSKTLPEVLGGNRVLCVANNID 291 Query: 277 EAAFNLFNYMKIADDSGASSIAFSSIPNHGLG-IAINNRLERAAA 320 A L+ + + D G + I +P G + NRLE+AAA Sbjct: 292 YMAK-LYAFFESCDLEGYNRIYCE-MPREEEGREGLLNRLEKAAA 334 >gi|54298977|ref|YP_125346.1| hypothetical protein lpp3044 [Legionella pneumophila str. Paris] gi|53752762|emb|CAH14197.1| hypothetical protein lpp3044 [Legionella pneumophila str. Paris] Length = 322 Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats. Identities = 106/331 (32%), Positives = 161/331 (48%), Gaps = 15/331 (4%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I++ L +A L G P+AIPTETVYGLA N AIR ++E+K RP +PL Sbjct: 1 MSIITTN----LNRAIHDLQQGKPVAIPTETVYGLAAPINNNAAIRAVFEMKSRPLNHPL 56 Query: 61 ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I H++ + V + LA FWPGPLTLV I+PL T T R Sbjct: 57 IVHIASNWDLHDLVEEVPEYAHQLADKFWPGPLTLVF-HCKKDQINPLITGGQSTIAIRC 115 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T+KL++ P+ PSAN G+IS T H+ S I+DGG ++G+ES Sbjct: 116 PDHPLTQKLLKKLNIPVVAPSANPFGKISPTTALHV-KQSFNDAELTILDGGRCRVGIES 174 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238 TIV+ +ILR G ++ +T+ I++ C + + + PG L SHY P+ + Sbjct: 175 TIVDATNPDSYQILRHGIIDEKTIAETIAIG---CSTQKNDIRVPGKLDSHYQPQKTLYY 231 Query: 239 --RAIHVNPREALIRFGNVPIKNIENAIISLNL-SKTG-KLKEAAFNLFNYMKIADDSGA 294 + ++ + I N + + NL G +++A++L+ +++AD S A Sbjct: 232 FDQYETLSEFCQKRKGTVYVIANRQPPGVETNLFHPLGMHPEKSAYDLYYQLRLADTSDA 291 Query: 295 SSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325 IA PN + R+ +A P +Q Sbjct: 292 ICIAIELPPNTSEWQGVRERILKAGFPYSQQ 322 >gi|54295812|ref|YP_128227.1| hypothetical protein lpl2902 [Legionella pneumophila str. Lens] gi|53755644|emb|CAH17146.1| hypothetical protein lpl2902 [Legionella pneumophila str. Lens] Length = 322 Score = 255 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 105/331 (31%), Positives = 161/331 (48%), Gaps = 15/331 (4%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I++ L +A L G P+AIPTETVYGLA N AIR ++E+K RP +PL Sbjct: 1 MSIITTN----LNRAIHDLQQGKPVAIPTETVYGLAAPINNNAAIRAVFEMKSRPLNHPL 56 Query: 61 ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I H++ + V + LA FWPGPLTLV I+PL T T R Sbjct: 57 IVHIASNWDLHDLVEEVPEYAHQLADKFWPGPLTLVF-HCKKDQINPLITGGQSTIAIRC 115 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T+KL++ P+ PSAN G+IS T H+ S I+DGG ++G+ES Sbjct: 116 PDHPLTQKLLQKLNIPVVAPSANPFGKISPTTALHV-KQSFNDAELTILDGGRCRVGIES 174 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238 TIV+ +ILR G ++ +T+ +++ C + + + PG L SHY P+ + Sbjct: 175 TIVDATNPDSYQILRHGIIDEKTIAETVAIG---CSTQKNDIRVPGKLDSHYQPQKTLYY 231 Query: 239 --RAIHVNPREALIRFGNVPIKNIENAIISLNL-SKTG-KLKEAAFNLFNYMKIADDSGA 294 + ++ + I N + + NL G +++A++L+ +++AD S A Sbjct: 232 FDQYETLSEFCQKRKGTVYVIANRQPPGVETNLFHPLGMHPEKSAYDLYYQLRLADTSDA 291 Query: 295 SSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325 IA PN + R+ +A P +Q Sbjct: 292 ICIAIELPPNTSEWQGVRERILKAGFPYSQQ 322 >gi|33600403|ref|NP_887963.1| hypothetical protein BB1417 [Bordetella bronchiseptica RB50] gi|33568002|emb|CAE31915.1| conserved hypothetical protein [Bordetella bronchiseptica RB50] Length = 345 Score = 255 bits (652), Expect = 8e-66, Method: Composition-based stats. Identities = 91/324 (28%), Positives = 140/324 (43%), Gaps = 25/324 (7%) Query: 18 FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77 L AG A PTETVYGL D+ NP A+ R+Y K RP+ +P+I H++ V AS Sbjct: 14 CLLAGELAAFPTETVYGLGADAENPQAVARIYAAKGRPSNHPVIVHIAPEGDVDYWASDV 73 Query: 78 P-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY--GH 133 P + L + FWPGPLTL+L + + R P + L+ + G Sbjct: 74 PAAARQLIQAFWPGPLTLILKRAPHIGAA--VSGGQDSIGIRCPSHPVAQALLRAFAAGK 131 Query: 134 P-----LAIPSANRSGQISITNVKHILSSSICKEIPL--IIDGGISKIGLESTIVNVQCE 186 P +A PSAN G +S T +H+ + + ++DGG +++G+ESTI+++ Sbjct: 132 PNGQGGVAAPSANTFGHVSPTRAEHVRAEFPREVAAGMPVLDGGDAEVGIESTIIDLSRL 191 Query: 187 KK---VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 + +LRPG + + + + + G LK+HYAPR+ + L Sbjct: 192 DQGVGPVLLRPGHISAAQVAAVLGMPVARPDAAAPRA--SGTLKAHYAPRTPLELLDAAQ 249 Query: 244 NPREALIRFGNVPIKNIENAIISLNLS-------KTGKLKEAAFNLFNYMKIADDSGASS 296 PR V + A L A L+ ++ D + Sbjct: 250 LPRALAAAPAGVRQAVVALAPAPAGLPAEVHWRMAPADPARYAQALYALLRELDRQAYAR 309 Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320 I P G A+N+R+ RAAA Sbjct: 310 ILVEQPPRSGDWDAVNDRIGRAAA 333 >gi|253744903|gb|EET01038.1| SUA5 protein [Giardia intestinalis ATCC 50581] Length = 370 Score = 254 bits (651), Expect = 9e-66, Method: Composition-based stats. Identities = 108/371 (29%), Positives = 166/371 (44%), Gaps = 55/371 (14%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +I+ T S + +A + G +AIPTETVYGLA D+ + TA +++ +K+RPA +PLI Sbjct: 4 RILGTTQSELI-EAAGAIQCGELVAIPTETVYGLAADALSNTACAKIFALKRRPANDPLI 62 Query: 62 CHVSDISMVKKHA----SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 H+S +S + A + P+ LA FWPGPLT+VL + TA +T Sbjct: 63 VHISSVSQLSMVAVLSVDLSPIVDILATAFWPGPLTMVLPAAPC--VPSTVTAGSQTIGV 120 Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P + +IE PLA PSAN G IS T + + + I ++ LIIDGG +G+ Sbjct: 121 RMPRHSVARTIIELAARPLAAPSANMFGSISPTRAEDVATEFIESDL-LIIDGGPCNVGI 179 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAI------SVELE------YCVDETSTPQSPG 224 EST++ + E + ILR G + + L+ + V +E + SPG Sbjct: 180 ESTVL-LIAEBCLTILRRGQVTEQMLEAVLMENALSHVRIEARALSMSSIQANEVVPSPG 238 Query: 225 MLKSHYAPRSQVRLRA-------------------------------IHVNPREALIRFG 253 HY+P++ L + P R Sbjct: 239 QFLRHYSPQTPCYLVMKGGPALPGAVRTTLPARLNGFVMVLDCNPALAELGPDAIFTRLA 298 Query: 254 NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI-PNHGLGIAIN 312 ++ + E A + L + L+ A LF ++ D G + I P GL A+ Sbjct: 299 DILPEGTEPAQL-LRVYSAPTLEAVAQGLFGALRQVDRLGPACILILPPEPVRGLAGALL 357 Query: 313 NRLERAAAPRN 323 +RL RAA+ R Sbjct: 358 DRLFRAASGRW 368 >gi|33595873|ref|NP_883516.1| hypothetical protein BPP1200 [Bordetella parapertussis 12822] gi|33565952|emb|CAE36502.1| conserved hypothetical protein [Bordetella parapertussis] Length = 350 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 91/324 (28%), Positives = 140/324 (43%), Gaps = 25/324 (7%) Query: 18 FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77 L AG A PTETVYGL D+ NP A+ R+Y K RP+ +P+I H++ V AS Sbjct: 19 CLLAGELAAFPTETVYGLGADAENPQAVARIYAAKGRPSNHPVIVHIAPEGDVDYWASDV 78 Query: 78 P-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY--GH 133 P + L + FWPGPLTL+L + + R P + L+ + G Sbjct: 79 PAAARQLIQAFWPGPLTLILKRAPHIGAA--VSGGQDSIGIRCPSHPVAQALLRAFAAGK 136 Query: 134 P-----LAIPSANRSGQISITNVKHILSSSICKEIPL--IIDGGISKIGLESTIVNVQCE 186 P +A PSAN G +S T +H+ + + ++DGG +++G+ESTI+++ Sbjct: 137 PNGQGGVAAPSANTFGHVSPTRAEHVRAEFPREVAAGMPVLDGGDAEVGIESTIIDLSRL 196 Query: 187 KK---VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 + +LRPG + + + + + G LK+HYAPR+ + L Sbjct: 197 DQGVGPVLLRPGHISAAQVAAVLGMPVARPDAAAPRA--SGTLKAHYAPRTPLELLDAAQ 254 Query: 244 NPREALIRFGNVPIKNIENAIISLNLS-------KTGKLKEAAFNLFNYMKIADDSGASS 296 PR V + A L A L+ ++ D + Sbjct: 255 LPRALAAAPAGVRQAVVALAPAPAGLPAEVHWRMAPADPARYAQALYALLRELDRQAYAR 314 Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320 I P G A+N+R+ RAAA Sbjct: 315 ILVEQPPRSGDWDAVNDRIGRAAA 338 >gi|148361313|ref|YP_001252520.1| SUA5/yciO/yrdC family transporter:Sua5/YciO/YrdC/YwlC family transporter protein [Legionella pneumophila str. Corby] gi|296108653|ref|YP_003620354.1| putative translation factor [Legionella pneumophila 2300/99 Alcoy] gi|148283086|gb|ABQ57174.1| SUA5/yciO/yrdC family:Sua5/YciO/YrdC/YwlC protein family [Legionella pneumophila str. Corby] gi|295650555|gb|ADG26402.1| putative translation factor [Legionella pneumophila 2300/99 Alcoy] Length = 322 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 106/331 (32%), Positives = 161/331 (48%), Gaps = 15/331 (4%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I++ L +A L G P+AIPTETVYGLA N AIR ++E+K RP +PL Sbjct: 1 MSIITTN----LNRAIHDLQQGKPVAIPTETVYGLAAPINNNAAIRAVFEMKSRPLNHPL 56 Query: 61 ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I H++ + V + LA FWPGPLTLV I+PL T T R Sbjct: 57 IVHIASNWDLHDLVEEVPEYAHQLAGKFWPGPLTLVF-HCKKDQINPLITGGQSTIAIRC 115 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T+KL++ P+ PSAN G+IS T H+ S I+DGG ++G+ES Sbjct: 116 PDHPLTQKLLQKLNIPVVAPSANPFGKISPTTALHV-KQSFNDAELTILDGGRCRVGIES 174 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238 TIV+ +ILR G ++ +T+ I++ C + + + PG L SHY P+ + Sbjct: 175 TIVDATNPDSYQILRHGIIDEKTIAETIAIG---CSTQKNDIRVPGKLDSHYQPQKTLYY 231 Query: 239 --RAIHVNPREALIRFGNVPIKNIENAIISLNL-SKTG-KLKEAAFNLFNYMKIADDSGA 294 + ++ + I N + + NL G +++A++L+ +++AD S A Sbjct: 232 FDQYETLSEFCQKRKGTVYVIANRQPPGVETNLFHPLGMHPEKSAYDLYYQLRLADTSDA 291 Query: 295 SSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325 IA PN + R+ +A P +Q Sbjct: 292 ICIAIELPPNTSEWQGVRERILKAGFPYSQQ 322 >gi|241662102|ref|YP_002980462.1| Sua5/YciO/YrdC/YwlC family protein [Ralstonia pickettii 12D] gi|240864129|gb|ACS61790.1| Sua5/YciO/YrdC/YwlC family protein [Ralstonia pickettii 12D] Length = 337 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 94/335 (28%), Positives = 152/335 (45%), Gaps = 30/335 (8%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 ++ + L +A L+AG +A PTETVYGL D+ NP AI ++Y K RP+ +P+I H Sbjct: 9 YNMPSAERLDEAARRLEAGELVAFPTETVYGLGADAENPQAIAKIYAAKGRPSNHPVIVH 68 Query: 64 VSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 V D + + A P ++L L + FWPGPLTL+L I + R P Sbjct: 69 VVDGADISYWADDVPGIALQLIEAFWPGPLTLILKRAPH--IPAAVAGGQDSIGLRCPSH 126 Query: 123 FTKKLI----ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 + + + +A PSAN+ GQ+S T +H+ + +++G +G+ES Sbjct: 127 PVAQALLSRFKRGRGGIAAPSANKFGQVSPTTAQHVRDEF--GDAVFVLEGDGVDVGIES 184 Query: 179 TIVNVQCEKK---VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQ 235 TI+++ + +LRPG + E ++R EL D + S G LK+HYAPR+ Sbjct: 185 TIIDLSRLDQGIGPVLLRPGAITPEDIERVTG-ELPAAPDAAAPRAS-GTLKAHYAPRTP 242 Query: 236 V----------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNY 285 + RL A+ + R + + + + A Sbjct: 243 LYLLSAADVPARLAALPADKRIVWLGAPVALRDGCDQRVAPATPAAYANALYALL----- 297 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + D G +I ++ + A+N+RL RAAA Sbjct: 298 -RELDRGGYDAIWVETLADTPAWAAVNDRLRRAAA 331 >gi|24214909|ref|NP_712390.1| putative translation factor Sua5 [Leptospira interrogans serovar Lai str. 56601] gi|24195936|gb|AAN49408.1| putative translation factor Sua5 [Leptospira interrogans serovar Lai str. 56601] Length = 315 Score = 253 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 89/320 (27%), Positives = 156/320 (48%), Gaps = 18/320 (5%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 ITDS + +A + L G + PTETVYG+ + + A +R+Y++K RP+ NPLI HV+ Sbjct: 10 ITDSTS--EAAKILLKGGLVVFPTETVYGIGASAFDIDACKRIYKVKNRPSDNPLILHVA 67 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125 + S +K +D + + + PGP+T + + L TA L + R+P T Sbjct: 68 NFSSLKDCGEIDDRANLVFQKLSPGPITGIFKKKNQN----LFTAGLDSVAIRIPSNPTA 123 Query: 126 K-LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 ++ P+A PSAN SG+ S+T +++IL I K + I+ G +IG+EST+V+ Sbjct: 124 LGFLKFCKIPVAAPSANFSGKPSLTKIEYILEEFIGK-VDCILKGEEPQIGIESTVVDFI 182 Query: 185 CEKKVRILRPGGLEIETLKRAI-SVELEYCVDETS--TPQSPGMLKSHYAPRSQVRLRAI 241 + + +LRPG ++ L + ++ +D+ S TP SPG+ HY+P +V Sbjct: 183 SKPPI-LLRPGFIDKNDLSEILPDLQEMKSLDKNSYTTPISPGLKYRHYSPNCKV---IF 238 Query: 242 HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSS 301 + + F + N++ + +S KE ++++ D G + Sbjct: 239 KNSLKGIPKEFAQIGFHFESNSVYQVLVSSN---KEYMKEIYSFFVECDRRGITEAWCEI 295 Query: 302 IPNHGLGIAINNRLERAAAP 321 + NR+ +AA+ Sbjct: 296 PKEEKWKEVLINRISKAASK 315 >gi|45657585|ref|YP_001671.1| hypothetical protein LIC11719 [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45600824|gb|AAS70308.1| conserved hypothetical protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 315 Score = 253 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 89/320 (27%), Positives = 156/320 (48%), Gaps = 18/320 (5%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 ITDS + +A + L G + PTETVYG+ + + A +R+Y++K RP+ NPLI HV+ Sbjct: 10 ITDSTS--EAAKILLKGGLVVFPTETVYGIGASAFDIDACKRIYKVKNRPSDNPLILHVA 67 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125 + S +K +D + + + PGP+T + + L TA L + R+P T Sbjct: 68 NFSSLKDCGEIDDRANLVFQKLSPGPITGIFKKKNQN----LFTAGLDSVAIRIPSNPTA 123 Query: 126 K-LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 ++ P+A PSAN SG+ S+T +++IL I K + I+ G +IG+EST+V+ Sbjct: 124 LGFLKFCKIPVAAPSANFSGKPSLTKIEYILEEFIGK-VDCILKGEEPQIGIESTVVDFI 182 Query: 185 CEKKVRILRPGGLEIETLKRAI-SVELEYCVDETS--TPQSPGMLKSHYAPRSQVRLRAI 241 + + +LRPG ++ L + ++ +D+ S TP SPG+ HY+P +V Sbjct: 183 SKPPI-LLRPGFIDKNDLSEILPDLQEMKSLDKNSYTTPISPGLKYKHYSPNCKV---IF 238 Query: 242 HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSS 301 + + F + N++ + +S KE ++++ D G + Sbjct: 239 KNSLKGIPKEFAQIGFHFESNSVYQVLVSSN---KEYMKEIYSFFVECDRRGITEAWCEI 295 Query: 302 IPNHGLGIAINNRLERAAAP 321 + NR+ +AA+ Sbjct: 296 PKEEKWKEVLINRISKAASK 315 >gi|322699100|gb|EFY90864.1| translation initiation protein Sua5 [Metarhizium acridum CQMa 102] Length = 437 Score = 253 bits (647), Expect = 3e-65, Method: Composition-based stats. Identities = 89/260 (34%), Positives = 133/260 (51%), Gaps = 16/260 (6%) Query: 12 LRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 L A E+L P+A PTETVYGL D+ +++ +Y K RP+ NPLI HV D+ M+ Sbjct: 43 LEPAAEYLRTKDTPVAFPTETVYGLGADATRSASVKGIYSAKGRPSDNPLIVHVCDLDML 102 Query: 71 KKHA------SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123 + ++ L K FWPGPLT++L + + P TA L T R+P Sbjct: 103 RTLLGSRGEDAIPARYQSLMKRFWPGPLTILLPNPDPSPLAPEVTAGLATFGVRMPSSPL 162 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 LI+ G PLA PSAN S + S T +H+ + I +I+DGG ++G+EST+V+ Sbjct: 163 ALTLIKLAGVPLAAPSANASTKPSPTMAQHV-KDDLDGRIEMILDGGSCRVGVESTVVDG 221 Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL------EYCVDETSTPQSPGMLKSHYAPRSQVR 237 C+ +LRPGG+ I+ L+ E + + + P++PGM HY+PR++V Sbjct: 222 LCDPPA-VLRPGGVAIDELRSCPGWEDVVKAYKDQSEEGKAAPRAPGMKYKHYSPRARVV 280 Query: 238 LRAIHVNPREALIRFGNVPI 257 L A I + Sbjct: 281 LYESSYENGRAGIVKADAEA 300 Score = 70.5 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 1/80 (1%) Query: 242 HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSS 301 + + G + + E ++S + + A LF+ ++ D GA I Sbjct: 354 QHDEMPYDVYAGELQNEQGETIGQVFDISLGQEHRGIAQGLFSALRELDRRGADVIFVDG 413 Query: 302 IPNH-GLGIAINNRLERAAA 320 I + + A+ NRL +AA+ Sbjct: 414 IDDELDIAAAVMNRLRKAAS 433 >gi|300175748|emb|CBK21291.2| unnamed protein product [Blastocystis hominis] Length = 364 Score = 253 bits (647), Expect = 3e-65, Method: Composition-based stats. Identities = 94/353 (26%), Positives = 161/353 (45%), Gaps = 36/353 (10%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 QI+ T N L + L G ++ PTETVYGL ++ N A+ +++ K RP +P+I Sbjct: 7 QILKPTPENFLF-CSQVLHNGGLVSFPTETVYGLGANALNRDAVCDIFKAKNRPFNDPVI 65 Query: 62 CHVSDISMVKKHASVDPLSLH----LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 HV +++ V LA FWPGPLT+V+ + + +A F Sbjct: 66 VHVLSEEDAERYIDVSNEERRIFHSLATSFWPGPLTIVM--KAKEILPKELSAGTGKVGF 123 Query: 118 RVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG--ISKI 174 R P ++L+ G P+A PSAN+ G IS T +H+ S + IIDGG + + Sbjct: 124 RCPSQPLARELLRVSGLPIAAPSANKFGHISPTRAEHVYSD-LSDWPVQIIDGGDIVCDV 182 Query: 175 GLESTIVNVQCEK-KVRILRPGGLEIETLKRAIS---------VELEYCVDE-TSTPQSP 223 G+EST++ + CEK ++ + R GG+ + + +++ E +P Sbjct: 183 GIESTVIGIDCEKQQIVLFRRGGVSEHAIMSCLQENGMAWSVWEPVKHVAMEMKEAQVAP 242 Query: 224 GMLKSHYAPRSQVRLRAIHVNPRE-----------ALIRFGNVPIKNIENAIISLNLSKT 272 G L +HYAP L + ++ F + E + L+LS+ Sbjct: 243 GQLITHYAPYCDTFLAEVDPKAMMPQIVRERIESTVVLDFAGMLEGYRERCLKFLSLSEK 302 Query: 273 GKLKEAAFNLFNYMKIADD-SGASSIAFSSIPN--HGLGIAINNRLERAAAPR 322 G + EA N++ ++ A+ G I +S+ L +++ +R+ RA + + Sbjct: 303 GDVMEAMKNIYGKLREAERVEGVKLILLASLGQRKEELALSVMDRMVRATSGK 355 >gi|159111922|ref|XP_001706191.1| SUA5 protein [Giardia lamblia ATCC 50803] gi|157434285|gb|EDO78517.1| SUA5 protein [Giardia lamblia ATCC 50803] Length = 406 Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats. Identities = 112/365 (30%), Positives = 162/365 (44%), Gaps = 53/365 (14%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 T + L A L G +AIPTETVYGLA D+ + A +++ +K+RPA +PLI H+S Sbjct: 45 TTQSELADAAGALQRGELVAIPTETVYGLAADALSEAACAKIFTLKQRPANDPLIVHISH 104 Query: 67 ISMVKKHA----SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 IS + A + + LA FWPGPLT+VL + + TA +T R+P Sbjct: 105 ISQLPMVAVVSVELSSIVDALAAAFWPGPLTMVLPAAPC--VPSIVTAGSQTIGVRMPRH 162 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 ++E PLA PSAN G IS T + + + + ++ LIIDGG IG+EST++ Sbjct: 163 PVACAILELAARPLAAPSANMFGSISPTQAEDVAAEFVNSDL-LIIDGGRCDIGIESTVL 221 Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVE-LEYCVDE----------TSTPQSPGMLKSHY 230 + + + ILR G + E L + L+Y E T SPG HY Sbjct: 222 -LVEKDCLTILRRGQVNEEMLVATLPTNALDYIRVETRALSSSGLQTKAVSSPGQFLRHY 280 Query: 231 APRSQVRLRA-------------------------------IHVNPREALIRFGNVPIKN 259 +PR++ L + P L + + Sbjct: 281 SPRTECYLVMKGGPMLPGAVRAILPARLDGFVVILDCNPALAELEPDALLRSLAGLLPEG 340 Query: 260 IENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI-PNHGLGIAINNRLERA 318 E A I L L+ AA +LF ++ AD G + I P GL A+ +RL RA Sbjct: 341 TEPARI-LRAYSVPTLEAAAQSLFETLRRADKLGPACILALPPEPARGLADALLDRLFRA 399 Query: 319 AAPRN 323 A+ R Sbjct: 400 ASGRW 404 >gi|187927597|ref|YP_001898084.1| Sua5/YciO/YrdC/YwlC family protein [Ralstonia pickettii 12J] gi|187724487|gb|ACD25652.1| Sua5/YciO/YrdC/YwlC family protein [Ralstonia pickettii 12J] Length = 337 Score = 252 bits (645), Expect = 5e-65, Method: Composition-based stats. Identities = 93/335 (27%), Positives = 153/335 (45%), Gaps = 30/335 (8%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 ++ + L +A L+AG +A PTETVYGL D+ +P+AI ++Y K RP+ +P+I H Sbjct: 9 YTMPSAERLDEAARRLEAGELVAFPTETVYGLGADAESPSAIAKIYAAKGRPSNHPVIVH 68 Query: 64 VSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 V D + + A P ++L L + FWPGPLTL+L I + R P Sbjct: 69 VVDGADISYWADDVPGIALQLIEAFWPGPLTLILKRAPH--IPAAVAGGQDSIGLRCPSH 126 Query: 123 FTKKLI----ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 + + + +A PSAN+ GQ+S T +H+ + +++G +G+ES Sbjct: 127 PVAQALLSRFKRGRGGIAAPSANKFGQVSPTTAQHVRDEF--GDAVFVLEGDGVDVGIES 184 Query: 179 TIVNVQCEKK---VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQ 235 TI+++ + +LRPG + E ++R EL D + S G LK+HYAPR+ Sbjct: 185 TIIDLSRLDQGIGPVLLRPGAITPEDIERVTG-ELPAAPDAAAPRAS-GTLKAHYAPRTP 242 Query: 236 V----------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNY 285 + RL A+ + R + + + + A Sbjct: 243 LYLLSAADVSARLAALPADKRIVWLGAPVALRDGCDQRVAPATPAAYANALYALL----- 297 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + D G +I ++ + A+N+RL RAAA Sbjct: 298 -RELDRGGYDAIWVETLADTPAWAAVNDRLRRAAA 331 >gi|258539383|ref|YP_003173882.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus rhamnosus Lc 705] gi|257151059|emb|CAR90031.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus rhamnosus Lc 705] Length = 322 Score = 252 bits (644), Expect = 6e-65, Method: Composition-based stats. Identities = 88/287 (30%), Positives = 142/287 (49%), Gaps = 15/287 (5%) Query: 47 RLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP 106 ++Y K RP+ NPLI V+D +MV ++A++ P + L FWPGPLT++L++L + Sbjct: 27 KVYAAKGRPSDNPLIVTVADAAMVSQYATITPDAAKLMDTFWPGPLTIILNILPGR-LSM 85 Query: 107 LSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPL 165 T L+TA FR P T+KLI T G P+ PSAN SG+ S T H+L + +I Sbjct: 86 KVTGGLQTAAFRNPDDALTRKLIATAGVPIVGPSANTSGKPSPTTADHVL-HDLADKIAG 144 Query: 166 IIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSP 223 ++D G +++G+ESTI+++ ILRPG + L+ + + V + P++P Sbjct: 145 VLDDGPTRVGVESTIIDLTVTPPA-ILRPGAIGPHELEPLLGPVDSAAHHVGKNEAPKAP 203 Query: 224 GMLKSHYAPRSQVRLRAIHVNPREALIR-------FGNVPIKNIENAIISLNLSKTG-KL 275 GM HYAP +QV + +A+ FG + +I + G + Sbjct: 204 GMKYKHYAPAAQVVVVDTIDQFDDAVAWAKKTGQTFGLLATDSILAHFPDVPSYSLGQDI 263 Query: 276 KEAAFNLFNYMKIAD-DSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 A LF ++ D + + + + L A NRL ++A Sbjct: 264 TSATHALFAGLRWFDLHPDVTLVLAQAFSHSELSAAYMNRLLKSAGN 310 >gi|124265490|ref|YP_001019494.1| translation factor SUA5 [Methylibium petroleiphilum PM1] gi|124258265|gb|ABM93259.1| translation factor SUA5 [Methylibium petroleiphilum PM1] Length = 335 Score = 251 bits (643), Expect = 7e-65, Method: Composition-based stats. Identities = 105/345 (30%), Positives = 158/345 (45%), Gaps = 34/345 (9%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M + A+ +A L AG +A PTETVYGL + + A+ +++ K RP +PL Sbjct: 1 MPRLDGHAPEAVAEAARLLAAGHLVAFPTETVYGLGARADDDAAVAKIFAAKGRPTDHPL 60 Query: 61 ICHV-SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I HV A + PL+ L FWPG LT+++ + ++ + R Sbjct: 61 IVHVADAAGAQAFAAELPPLAQRLIAAFWPGTLTVIVSRRAGVAAA--ASGGQPSIGLRC 118 Query: 120 PCGFTKKLIETY----GHP-LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174 P + + G P +A PSANR G++S T H+ +++DGG ++ Sbjct: 119 PSHPVAQALLRSAAALGVPGVAGPSANRYGRVSPTRAAHVEGEF--DAALVVLDGGDCEV 176 Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD--ETSTPQSPGMLKSHYAP 232 G+ESTIV+ V +LRPG L E ++ A L D S P++PG L SHYAP Sbjct: 177 GIESTIVDCTRGHPV-LLRPGVLPRERIEAAAGERLLDAADALAGSAPRAPGTLASHYAP 235 Query: 233 RSQVRLR-------AIHVNPREALIRFGNVPIKNIENAIISLNLSK---------TGKLK 276 R+ +RL A+ V P +AL + G + A+ S ++S Sbjct: 236 RATLRLMPATALRTALEVLPTDALPKRGGSRL-----AVYSRSVSPPSRLTARRMPDDPA 290 Query: 277 EAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 AA LF+ ++ DD G I P + +RL+RAAAP Sbjct: 291 AAAHELFSVLRELDDEGVQLIWVEEPPAGPAWEGVRDRLQRAAAP 335 >gi|254497395|ref|ZP_05110195.1| Sua5/YciO/YrdC/YwlC family protein [Legionella drancourtii LLAP12] gi|254353374|gb|EET12109.1| Sua5/YciO/YrdC/YwlC family protein [Legionella drancourtii LLAP12] Length = 323 Score = 251 bits (643), Expect = 7e-65, Method: Composition-based stats. Identities = 105/330 (31%), Positives = 159/330 (48%), Gaps = 23/330 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS--- 65 + + A L AG P+AIPTETVYGLA N AI+ ++ +K+RP +PLI HV+ Sbjct: 5 TTDIALAVHDLQAGKPVAIPTETVYGLAAPINNEQAIKAVFAMKERPLNHPLIVHVAANW 64 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 D+S + + + L K FWPGPLTLVL T I+PL T R P Sbjct: 65 DLSTL--VTDIPAYANLLIKKFWPGPLTLVLRCNPT-QINPLINGGQTTVAIRCPAHPLA 121 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 ++L+ P+ PSAN G++S T H+ S ++ I+DGG +G+ESTIV+ Sbjct: 122 QELLTQLRIPVVAPSANPFGKVSPTTALHV-QESFPQQALTILDGGRCTVGIESTIVDAS 180 Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244 + +ILR G ++ +++ I+ D+ S + PG L SHY P+ + A + + Sbjct: 181 NPEHYQILRHGLIDEQSIAAVITAP---ARDQPSRIRVPGKLDSHYQPQKTLYYFADYEH 237 Query: 245 PREALIRFGNVPIKNIENAIISLNLSK--------TGKLKEAAFNLFNYMKIADDSGASS 296 L +F I + + ++AAF+L+ ++ AD S A Sbjct: 238 ----LAQFCQQSSAEIYAIASKCPATVHHEHYHPLATQPEQAAFDLYFQLRAADASNAQC 293 Query: 297 IAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326 IA P +GL I R+ +A P Q Sbjct: 294 IAIELPPENGLWQGIRERILKAGIPYAAEQ 323 >gi|46107246|ref|XP_380682.1| hypothetical protein FG00506.1 [Gibberella zeae PH-1] Length = 433 Score = 251 bits (643), Expect = 9e-65, Method: Composition-based stats. Identities = 91/266 (34%), Positives = 136/266 (51%), Gaps = 18/266 (6%) Query: 10 NALRKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 AL A L P+A PTETVYGL D+ +++ +Y K RP+ NPLI HV D+ Sbjct: 40 KALEDAAHELRTTDTPVAFPTETVYGLGADATRTPSVKGIYSAKGRPSDNPLISHVCDLD 99 Query: 69 MVKKHA--------SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 M++++ + L + FWPGPLT++L + + P TA LKT R+P Sbjct: 100 MLRQYIGHTDETQDPIPERYRALIERFWPGPLTILLPNPVPSKLAPEVTAGLKTFGVRMP 159 Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 LI+ G PLA PSAN S + S T +H+ + I LI+DGG ++G+EST Sbjct: 160 SSPLALSLIKLAGVPLAAPSANASTKPSPTAAQHV-KDDLDGRIELILDGGHCQVGVEST 218 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVE------LEYCVDETSTPQSPGMLKSHYAPR 233 +V+ C+ V +LRPGGL ++ L+ E + + + P++PGM HY+P+ Sbjct: 219 VVDGLCDPPV-VLRPGGLGMDELRTCPGWENATIAYKDKSEEGKAAPRAPGMKYKHYSPK 277 Query: 234 SQVRLRAIHVNPREALIRFGNVPIKN 259 + V L + I N + N Sbjct: 278 ATVVLYESSFDKGGDGIALSNFEVSN 303 Score = 69.3 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%) Query: 276 KEAAFNLFNYMKIADDSGASSIAFSSIPNH-GLGIAINNRLERAAA 320 + A LF ++ D GA +I I + + A+ NRL +AA+ Sbjct: 384 EGIARGLFAALRDFDRRGADTIFVDGIEDKSDIAAAVMNRLRKAAS 429 >gi|312222358|emb|CBY02298.1| hypothetical protein [Leptosphaeria maculans] Length = 543 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 85/261 (32%), Positives = 134/261 (51%), Gaps = 26/261 (9%) Query: 2 QIMSITDSNALRKAC-EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 Q + D +L++A E L+ P+A PTETVYGL D+ +A++ ++ K RPA NPL Sbjct: 132 QYVEGKDYESLKRAAGELLNTDTPVAFPTETVYGLGADATRSSAVKAIFAAKGRPADNPL 191 Query: 61 ICHVSDISMVKKHAS----------------VDPLSLHLAKLFWPGPLTLVLDLLSTTDI 104 I H+ + ++ S + + + + FWPGP+T++L ++ + Sbjct: 192 IVHIHSLRQLRAILSGGKENLKGAVGPEDDPIPAIYRPIIERFWPGPITIILPAPDSSML 251 Query: 105 HPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEI 163 P TA L T R+P L+ G PLA PSAN S + S T +H+ + + I Sbjct: 252 APEVTAGLPTFGARMPRSILALSLLRLCGRPLAAPSANASTRPSPTAAEHVF-DDLQERI 310 Query: 164 PLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVE------LEYCVDET 217 IIDGG ++G+EST+V+ ILRPGG+ +E L++ E + Sbjct: 311 RTIIDGGPCEVGVESTVVDGLSS-PPSILRPGGITVEQLRQCPGWENVVVGYKDSQEGGA 369 Query: 218 STPQSPGMLKSHYAPRSQVRL 238 S P++PGM HY+P+++V L Sbjct: 370 SKPRAPGMKYRHYSPKAKVIL 390 Score = 74.3 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 3/56 (5%) Query: 267 LNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPN---HGLGIAINNRLERAA 319 ++ ++ A LF+ ++ D GA I I + + A+ NRL +AA Sbjct: 484 WDIYLGADTQDVARGLFSALRELDKKGADVIYVEGIDDKAGDDIAAAVMNRLRKAA 539 >gi|94500117|ref|ZP_01306651.1| hypothetical protein RED65_13317 [Oceanobacter sp. RED65] gi|94427690|gb|EAT12666.1| hypothetical protein RED65_13317 [Oceanobacter sp. RED65] Length = 352 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 90/334 (26%), Positives = 158/334 (47%), Gaps = 23/334 (6%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +++ + ++A L G +A+PTETVYGLA D+RN A+ ++E K RP +PLI Sbjct: 4 KLLKAHSAKDRQQAGAILKQGGLVAVPTETVYGLAADARNDIALASIFEAKGRPVDHPLI 63 Query: 62 CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 H+++ + ++K A V ++ L + FWPG LTLVL + + T L T R+P Sbjct: 64 LHIANSTELEKWARDVPHIAQSLVEAFWPGALTLVL--KKAEGVSDILTGGLDTVAIRMP 121 Query: 121 CGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 ++ T+ +A PSAN ++S T H+++ + + I ++DGG + G+EST Sbjct: 122 NQPALLDILRTHELIVAAPSANPYEKLSPTQAHHVMN-GMGELIDAVVDGGACEQGIEST 180 Query: 180 IVNVQCEKK--VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVR 237 I+++ + R+LRPG + ++ + + + + G K HY P++ + Sbjct: 181 ILDISDYPRTSPRVLRPGPISASQIEAVLDQTVLQPDNHNE--KVSGNKKVHYRPKATLV 238 Query: 238 LRAIHVNPREALIRFGNVPIKNIENAII------------SLNLSKTGKLKEAAFNLFNY 285 L ALIR G + + II + L + A + ++ Sbjct: 239 LCETEQLD--ALIRNGVAGVFLYHSEIIETALNDSQLHGDQIALRLPADHQGYAQSWYST 296 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 + D ++ +PN+ I NR+ RAA Sbjct: 297 LHEVDCLMPDTVYTECVPNNTEWSGIANRIARAA 330 >gi|154281557|ref|XP_001541591.1| hypothetical protein HCAG_03689 [Ajellomyces capsulatus NAm1] gi|150411770|gb|EDN07158.1| hypothetical protein HCAG_03689 [Ajellomyces capsulatus NAm1] Length = 490 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 83/279 (29%), Positives = 135/279 (48%), Gaps = 36/279 (12%) Query: 8 DSNALRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 ++ L +A E L + +P+A PTETVYGL D+ A++ +Y+ K+RP+ NPLI HVS Sbjct: 57 EAKVLLEAAEALRTSDIPVAFPTETVYGLGADATRSAAVQGIYKAKQRPSDNPLIVHVSS 116 Query: 67 ISMVKKHAS--------------------------VDPLSLHLAKLFWPGPLTLVLDLLS 100 +++ + P+ L FWPGPLT++L + Sbjct: 117 KEQLQRLLQPHSSSPSRGEYGSRTEGSQQGGKRNFIPPIYEPLISKFWPGPLTIILPNPT 176 Query: 101 TTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSI 159 + + P T+ L+T R+P + LI PLA PSAN S + S T +H+ + + Sbjct: 177 PSPLAPEVTSTLRTFGVRMPSSPVARLLIYLADRPLAAPSANASTKPSPTTAQHVY-ADL 235 Query: 160 CKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL------EYC 213 I +I+DGG +G+EST+V+ +LRPGG+ IE ++ E + Sbjct: 236 QGRINMILDGGPCGVGVESTVVDGLL-YPPAVLRPGGVGIEEIRACPGWEDVQIGYKDGA 294 Query: 214 VDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRF 252 + P++PGM HY+P+++V L + + Sbjct: 295 LQGKEVPRAPGMKYKHYSPKAKVVLFEAGQDVEAVKSKL 333 Score = 68.5 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 4/58 (6%) Query: 264 IISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG--LGIAINNRLERAA 319 + +++ A LF+ ++ D+ S I I + L AI NRL +AA Sbjct: 429 LFDIDIGPDTD--SIARGLFSALRGLDEKNVSIIYVEGISDTEGDLAAAIMNRLRKAA 484 >gi|225563151|gb|EEH11430.1| translation initiation protein Sua5 [Ajellomyces capsulatus G186AR] Length = 490 Score = 250 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 83/279 (29%), Positives = 135/279 (48%), Gaps = 36/279 (12%) Query: 8 DSNALRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 ++ L +A E L + +P+A PTETVYGL D+ A++ +Y+ K+RP+ NPLI HVS Sbjct: 57 EAKVLLEAAEELRTSDIPVAFPTETVYGLGADATRSAAVQGIYKAKQRPSDNPLIVHVSS 116 Query: 67 ISMVKKHAS--------------------------VDPLSLHLAKLFWPGPLTLVLDLLS 100 +++ + P+ L FWPGPLT++L + Sbjct: 117 REQLQRLLQPHSSSPSQGGYGSRTEGSQQGGKRNFIPPIYEPLISKFWPGPLTIILPNPT 176 Query: 101 TTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSI 159 + + P T+ L+T R+P + LI PLA PSAN S + S T +H+ + + Sbjct: 177 PSPLAPEVTSTLRTFGVRMPSSPVARLLIYLADRPLAAPSANASTKPSPTTAQHVY-ADL 235 Query: 160 CKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL------EYC 213 I +I+DGG +G+EST+V+ +LRPGG+ IE ++ E + Sbjct: 236 QGRINMILDGGPCGVGVESTVVDGLL-YPPAVLRPGGIGIEEIRACPGWEDVQIGYEDGA 294 Query: 214 VDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRF 252 + P++PGM HY+P+++V L + + Sbjct: 295 LQGKEVPRAPGMKYKHYSPKAKVVLFEAGQDVETVKSKL 333 Score = 68.5 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 4/58 (6%) Query: 264 IISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG--LGIAINNRLERAA 319 + +++ A LF+ ++ D+ S I I + L AI NRL +AA Sbjct: 429 LFDIDIGPDTD--SIARGLFSALRGLDEKNVSIIYVEGISDTEGDLAAAIMNRLRKAA 484 >gi|302923042|ref|XP_003053592.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256734533|gb|EEU47879.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 431 Score = 250 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 89/265 (33%), Positives = 135/265 (50%), Gaps = 18/265 (6%) Query: 10 NALRKACEFLDAG-LPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 AL KA L P+A PTETVYGL D+ +++ +Y K RP+ NPLI HV D+ Sbjct: 40 KALEKAAHELRTTPTPVAFPTETVYGLGADATRSPSVKGIYSAKGRPSDNPLISHVCDLE 99 Query: 69 MVKKHA--------SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 M++++ + L + FWPGPLT++L T + P TA LKT R+P Sbjct: 100 MLREYIGQIEGGQDPIPSRYRALIERFWPGPLTILLPNPQPTKLAPEVTAGLKTFGVRMP 159 Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 LI+ G PLA PSAN S + S T +H++ + I LI+DGG +G+EST Sbjct: 160 SSPLALSLIKLAGVPLAAPSANASTKPSPTTAQHVM-DDLRGRIELILDGGQCAVGVEST 218 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVE------LEYCVDETSTPQSPGMLKSHYAPR 233 +V+ C+ V +LRPGG+ ++ L+ E + + + P++PGM HY+P+ Sbjct: 219 VVDGLCDPPV-VLRPGGIGLDELRSCPGWEGAVIAYKDQSEEGKAAPRAPGMKYKHYSPK 277 Query: 234 SQVRLRAIHVNPREALIRFGNVPIK 258 ++V L + + Sbjct: 278 ARVVLYESSCAKGATGVASSELATA 302 Score = 76.6 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 1/69 (1%) Query: 253 GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH-GLGIAI 311 G++ +N + L++ + A LF+ ++ D GA +I I + + A+ Sbjct: 359 GDLLDENEKPIGKILDIDLGRDTEGIARGLFSALREFDRQGADTIFVEGIEDRIDIAAAV 418 Query: 312 NNRLERAAA 320 NRL +AA+ Sbjct: 419 MNRLRKAAS 427 >gi|325093106|gb|EGC46416.1| translation initiation protein Sua5 [Ajellomyces capsulatus H88] Length = 490 Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats. Identities = 83/279 (29%), Positives = 134/279 (48%), Gaps = 36/279 (12%) Query: 8 DSNALRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 ++ L +A E L + +P+A PTETVYGL D+ A++ +Y+ K+RP+ NPLI HVS Sbjct: 57 EAKVLLEAAEALRTSDIPVAFPTETVYGLGADATRSAAVQGIYKAKQRPSDNPLIVHVSS 116 Query: 67 ISMVKKHAS--------------------------VDPLSLHLAKLFWPGPLTLVLDLLS 100 +++ + P+ L FWPGPLT++L + Sbjct: 117 REQLQRLLQPHSSSPSQGGYGSRTEGSQQGGKRNFIPPIYEPLISKFWPGPLTIILPNQT 176 Query: 101 TTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSI 159 + + P T+ L+T R+P + LI PLA PSAN S + S T +H+ + + Sbjct: 177 PSPLAPEVTSTLRTFGVRMPSSPVARLLIYLADRPLAAPSANASTKPSPTTAQHVY-ADL 235 Query: 160 CKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL------EYC 213 I +I+DGG +G+EST+V+ +LRPGG+ IE ++ E + Sbjct: 236 QGRINMILDGGPCGVGVESTVVDGLL-YPPAVLRPGGIGIEEIRACPGWEDVQIGYKDGA 294 Query: 214 VDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRF 252 + P +PGM HY+P+++V L + + Sbjct: 295 LQGKEVPLAPGMKYKHYSPKAKVVLFEAGQDVETVKSKL 333 Score = 68.5 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 4/58 (6%) Query: 264 IISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG--LGIAINNRLERAA 319 + +++ A LF+ ++ D+ S I I + L AI NRL +AA Sbjct: 429 LFDIDIGPDTD--SIARGLFSALRGLDEKNVSIIYVEGISDTEGDLAAAIMNRLRKAA 484 >gi|320040093|gb|EFW22027.1| translation initiation protein Sua5 [Coccidioides posadasii str. Silveira] Length = 461 Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats. Identities = 83/253 (32%), Positives = 127/253 (50%), Gaps = 26/253 (10%) Query: 24 PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-------- 75 P+A PTETVYGL D+ A++ +Y K+RP+ NPLI HVS +++ Sbjct: 69 PVAFPTETVYGLGADATRSAAVQGIYRAKQRPSDNPLIVHVSSREQLERLLRPPGCPTSN 128 Query: 76 ---------VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125 + P+ L + FWPGPLT+++ + + P T+NL T R+P + Sbjct: 129 QNSLQTSSLIPPIYEPLIERFWPGPLTILIPNPKHSPLAPEVTSNLSTFGVRMPSSSLAR 188 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LI+ PLA PSAN S + S T +H+ + + I +I+DGG +G+EST+V+ Sbjct: 189 LLIKLADRPLAAPSANASTKPSPTTAQHVY-ADLHGRIDIILDGGSCGVGVESTVVD-GL 246 Query: 186 EKKVRILRPGGLEIETLKRAISVEL------EYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 ILRPGG+ IE ++ E + + TP++PGM HY+PR++V L Sbjct: 247 NHPPAILRPGGVGIEEIRACRGWEDVRVGYKDGALPGKMTPRAPGMKYRHYSPRAKVVLF 306 Query: 240 AIHVNPREALIRF 252 + R Sbjct: 307 ETGQEMPSVVRRI 319 Score = 66.2 bits (161), Expect = 6e-09, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%) Query: 278 AAFNLFNYMKIADDSGASSIAFSSIPNH--GLGIAINNRLERAA 319 A LF+ ++ D++ S+I I + L AI NRL +AA Sbjct: 412 IARGLFSALRSLDENDVSTIYVEGIADTDGDLAAAIMNRLRKAA 455 >gi|303312189|ref|XP_003066106.1| SUA5 protein, putative [Coccidioides posadasii C735 delta SOWgp] gi|240105768|gb|EER23961.1| SUA5 protein, putative [Coccidioides posadasii C735 delta SOWgp] Length = 461 Score = 249 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 83/253 (32%), Positives = 127/253 (50%), Gaps = 26/253 (10%) Query: 24 PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-------- 75 P+A PTETVYGL D+ A++ +Y K+RP+ NPLI HVS +++ Sbjct: 69 PVAFPTETVYGLGADATRSAAVQGIYRAKQRPSDNPLIVHVSSREQLERLLRPPGCPTSN 128 Query: 76 ---------VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125 + P+ L + FWPGPLT+++ + + P T+NL T R+P + Sbjct: 129 QNSLQTSSLIPPIYEPLIERFWPGPLTILIPNPKHSPLAPEVTSNLSTFGVRMPSSSLAR 188 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LI+ PLA PSAN S + S T +H+ + + I +I+DGG +G+EST+V+ Sbjct: 189 LLIKLADRPLAAPSANASTKPSPTTAQHVY-ADLHGRIDIILDGGSCGVGVESTVVD-GL 246 Query: 186 EKKVRILRPGGLEIETLKRAISVEL------EYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 ILRPGG+ IE ++ E + + TP++PGM HY+PR++V L Sbjct: 247 NHPPAILRPGGVGIEEIRACRGWEDVRVGYKDGALPGKMTPRAPGMKYRHYSPRAKVVLF 306 Query: 240 AIHVNPREALIRF 252 + R Sbjct: 307 ETGQEMPSVVRRI 319 Score = 66.2 bits (161), Expect = 6e-09, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%) Query: 278 AAFNLFNYMKIADDSGASSIAFSSIPNH--GLGIAINNRLERAA 319 A LF+ ++ D++ S+I I + L AI NRL +AA Sbjct: 412 IARGLFSALRSLDENDVSTIYVEGIADTDGDLAAAIMNRLRKAA 455 >gi|171915109|ref|ZP_02930579.1| Sua5/YciO/YrdC/YwlC family protein [Verrucomicrobium spinosum DSM 4136] Length = 329 Score = 249 bits (637), Expect = 4e-64, Method: Composition-based stats. Identities = 110/332 (33%), Positives = 164/332 (49%), Gaps = 23/332 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A L AG +A+PTETVYGLA D+ N A+ +++ K+RPA +PLI H+ + Sbjct: 1 MDEAVRALSAGEVVALPTETVYGLAADALNADAVAKVFAAKERPAFDPLIVHLPHKKDLD 60 Query: 72 KHASVD----PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KK 126 A V + + + FWPGPLT+VL + L TA + T R + Sbjct: 61 LVAEVPEDIAEVVKKITEKFWPGPLTIVLP--KKAVVPDLVTAGMPTVAVRASNHLVFNR 118 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 + + PLA PSANR G IS T+ + + + IPLI+D G + GLESTI+ ++ Sbjct: 119 VARSLDKPLAAPSANRFGSISPTSASAV-QAELDGRIPLILDAGATMHGLESTIIRIEAA 177 Query: 187 KK---VRILRPGGLEIETLKRAISVELEYCV--DETSTPQSPGMLKSHYAPRSQVRLRAI 241 K + ILRPG + + LK L + +E ++PG L SHYAPR+ +RL Sbjct: 178 KPKARIIILRPGPITPDDLKPFGKPILARNLKPEEQEKLEAPGQLPSHYAPRTPLRLLES 237 Query: 242 ------HVNPREALIRFGNVP---IKNIENAIISLNLSKT-GKLKEAAFNLFNYMKIADD 291 + AL+ + P ++ + LS GKL EAA F ++ D Sbjct: 238 PEEFTPEPGKKYALLSYRGDPDDGYSDLAEWDHVMVLSPGKGKLPEAAVRFFFALRELDK 297 Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAAPRN 323 G I +P LG+A+ +RL RA+ R+ Sbjct: 298 LGVDEIIAEPLPERELGLAMMDRLRRASVKRS 329 >gi|11498387|ref|NP_069615.1| hypothetical protein AF0781 [Archaeoglobus fulgidus DSM 4304] gi|2649831|gb|AAB90461.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304] Length = 309 Score = 248 bits (635), Expect = 6e-64, Method: Composition-based stats. Identities = 99/321 (30%), Positives = 152/321 (47%), Gaps = 33/321 (10%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +RKA L AG +A PTETVYG+ D+ N A+RRLYEIK R P I V Sbjct: 10 EGIRKAVAVLRAGGIVAFPTETVYGMGCDATNEEALRRLYEIKGRSLNKPFIVGVWSRDY 69 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLI 128 V K A VD + L + F+PGPLTLVL + + P + R+P +L+ Sbjct: 70 VGKIAEVDERAEKLMEAFFPGPLTLVL---KSKGVMPSLLSPKGKIAVRMPAHEVPLQLM 126 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E P+ +PSAN SG+ S+ +H++ + I ++ G K+G+ESTIV++ E Sbjct: 127 EMLRKPIVVPSANLSGRPSLMRWEHVV-EELGSRIDAVVKGE-CKVGVESTIVDLT-ETP 183 Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVR-------LRAI 241 ++LR G + +E++K+ + V +E + Y+ QV L+ I Sbjct: 184 AKVLRVGAVSVESIKKHVEVVVEPRKET-------------YSLSCQVYVFVGERALQRI 230 Query: 242 HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSS 301 EA R V I + ++ + K+ +E + NLF+ ++ A+ I Sbjct: 231 KEFVDEAEKRGRVVVIAREKITDETIVIGKSA--EEYSANLFSAVREAESRRPDIIVIEG 288 Query: 302 IPNHGLGIAINNRLERAAAPR 322 + N AI +RL R A R Sbjct: 289 VENE----AIMDRLRRLAGER 305 >gi|121608514|ref|YP_996321.1| Sua5/YciO/YrdC/YwlC family protein [Verminephrobacter eiseniae EF01-2] gi|121553154|gb|ABM57303.1| translation factor SUA5 [Verminephrobacter eiseniae EF01-2] Length = 348 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 96/330 (29%), Positives = 142/330 (43%), Gaps = 38/330 (11%) Query: 24 PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL-SLH 82 + +PTETVYGLA D+ N A+ +++ K RP +PLI HV+ + A P + Sbjct: 23 LLGLPTETVYGLAADAGNDAAVAQIFAAKGRPRDHPLIVHVASAEGIAHFARALPAFAQA 82 Query: 83 LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP------- 134 LA FWPGPLTL+L + + + R P + L+ P Sbjct: 83 LADAFWPGPLTLILPRRPG--VASAAAGGQDSVGLRCPAHPVAQALLRACAAPPPEGGTD 140 Query: 135 ------------LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 LA PSANR G++S T +H+ L++DGG +G+ESTIV+ Sbjct: 141 QGHDQGGPPIRGLAAPSANRFGRVSTTTAQHVQDEL--GAALLVLDGGPCALGIESTIVD 198 Query: 183 VQCEKKVRILRPGGLEIETLKRAISV-ELEYCVDETSTPQSPGMLKSHYAPRSQVRL--- 238 V +LRPG + + A + L P++PG L +HYAPR++VRL Sbjct: 199 CTRGLPV-LLRPGSITRAQIAAACGIAPLSRAELPALDPRAPGTLAAHYAPRAKVRLMDA 257 Query: 239 RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTG--------KLKEAAFNLFNYMKIAD 290 RA+ + A +L + G A LF ++ D Sbjct: 258 RALQTSLDLWAASAPAATAPMAVYARSALRMPAPGPILRRMPDDASATAQQLFAVLRSLD 317 Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAA 320 D+G I + P + +RL+RAAA Sbjct: 318 DAGVPLIWIETPPATPDWEGVRDRLQRAAA 347 >gi|258574551|ref|XP_002541457.1| hypothetical protein UREG_00973 [Uncinocarpus reesii 1704] gi|237901723|gb|EEP76124.1| hypothetical protein UREG_00973 [Uncinocarpus reesii 1704] Length = 458 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 80/253 (31%), Positives = 126/253 (49%), Gaps = 26/253 (10%) Query: 24 PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-------- 75 P+A PTETVYGL D+ A++ +Y+ K+RP+ NPLI HV ++ Sbjct: 69 PVAFPTETVYGLGADATRSAAVQGIYKAKQRPSDNPLIVHVHSREQLEGLLQPPKCPKSQ 128 Query: 76 ---------VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125 + P+ L + FWPGPLT+++ + + P T+NL T R+P + Sbjct: 129 QTTAQSSSLIPPIYEPLIQRFWPGPLTILIPNPPHSPLAPEVTSNLSTFGVRMPSSSLAR 188 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LI PLA PSAN S + S T +H+ + + I +I+DGG +G+EST+V+ Sbjct: 189 LLIRLADRPLAAPSANASTKPSPTTAQHVYTD-LRGRIDIILDGGPCGVGVESTVVDGLS 247 Query: 186 EKKVRILRPGGLEIETLKRAISVEL------EYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 + ILRPGG+ IE ++ E + + + P++PGM HY+P+++V L Sbjct: 248 -QPPAILRPGGVGIEEIRSCRGWEDVRIGYKDGALQGRTAPRAPGMKYRHYSPKAKVVLF 306 Query: 240 AIHVNPREALIRF 252 + R Sbjct: 307 ESGQPMSSVIERI 319 Score = 74.7 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%) Query: 267 LNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG--LGIAINNRLERAA 319 +++S A LF+ ++ D S+I IP L AI NRL +AA Sbjct: 398 IDISLGADTHSIARGLFSALRSLDAHNVSTIYVEGIPETEGDLAAAIMNRLRKAA 452 >gi|327348880|gb|EGE77737.1| SUA5 [Ajellomyces dermatitidis ATCC 18188] Length = 490 Score = 246 bits (629), Expect = 4e-63, Method: Composition-based stats. Identities = 85/271 (31%), Positives = 133/271 (49%), Gaps = 36/271 (13%) Query: 8 DSNALRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 ++ L +A E L + +P+A PTETVYGL D+ A++ +Y+ K+RP+ NPLI HVS Sbjct: 57 EAKVLLEAAEALRTSDIPVAFPTETVYGLGADATRSAAVQGIYKAKQRPSDNPLIVHVSS 116 Query: 67 ISMVKKHASVDPLSLH--------------------------LAKLFWPGPLTLVLDLLS 100 +++ SL L FWPGPLT++L + Sbjct: 117 REQLQRLLLSPSDSLRDGKSDSGTKRSQQGGETNLIPLIYEPLISRFWPGPLTIILPNPT 176 Query: 101 TTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSI 159 + + P T+ L T R+P + LI PLA PSAN S + S T +H+ + + Sbjct: 177 PSPLAPEVTSTLPTFGVRMPSSPLARLLIYLADRPLAAPSANASTKPSPTTAQHVYTD-L 235 Query: 160 CKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVE------LEYC 213 I +I+DGG S +G+EST+V+ +LRPGG+ IE ++ E + Sbjct: 236 QGRIDMILDGGPSGVGVESTVVDGLL-YPPAVLRPGGIGIEEIRACPGWEEVRIGYKDGA 294 Query: 214 VDETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244 + P++PGM HY+P+++V L + Sbjct: 295 LQGKEVPRAPGMKYKHYSPKAKVVLFEAGRD 325 Score = 69.3 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 2/90 (2%) Query: 232 PRSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291 P + + + +R N+ I ++ A LF+ ++ D+ Sbjct: 395 PTNPFNSSSHVTGYQSTCLRLLPSIELNLGTPIELFDIYIGPDTDSIARGLFSALRGLDE 454 Query: 292 SGASSIAFSSIPNHG--LGIAINNRLERAA 319 S I I + L AI NRL +AA Sbjct: 455 KNVSIIYVEGISDTEGDLAAAIMNRLRKAA 484 >gi|296813235|ref|XP_002846955.1| translation initiation protein Sua5 [Arthroderma otae CBS 113480] gi|238842211|gb|EEQ31873.1| translation initiation protein Sua5 [Arthroderma otae CBS 113480] Length = 447 Score = 246 bits (629), Expect = 4e-63, Method: Composition-based stats. Identities = 81/259 (31%), Positives = 131/259 (50%), Gaps = 26/259 (10%) Query: 10 NALRKACEFLDAGLP-IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 AL +A E + +A PTETVYGL D+ A++ +Y+ K+RP+ NPLI HVS Sbjct: 47 TALLEAAEAIRTSDVPVAFPTETVYGLGADATRSAAVQGIYKAKQRPSDNPLIVHVSSRE 106 Query: 69 MVKKH----------------ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANL 112 +++ + + + + + FWPG L+++L S + P TA+L Sbjct: 107 QLERLLQTSQPSNGAIHNPTASPIPKIYEPVIEKFWPGALSIILPNPSHLPLAPEVTASL 166 Query: 113 KTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171 T R+P + LI P+A PSAN S + S T +H+ + + I +I+DGG Sbjct: 167 STFAVRMPSSPLARLLIALADRPVAAPSANASTKPSPTTAQHVYTD-LQGRIDIILDGGP 225 Query: 172 SKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVE------LEYCVDETSTPQSPGM 225 +G+EST+V+ ILRPGG+ I+ L+ E + + +TP++PGM Sbjct: 226 CGVGVESTVVDGLSSPPA-ILRPGGVGIDELRTCPGWENVQIGYKDGALQGKATPRAPGM 284 Query: 226 LKSHYAPRSQVRLRAIHVN 244 HY+P+++V L + Sbjct: 285 KYKHYSPKARVVLFEAGQD 303 Score = 68.5 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 2/55 (3%) Query: 267 LNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG--LGIAINNRLERAA 319 ++ A LF+ ++ D+ S I I + L A+ NRL +AA Sbjct: 385 FDIYLGDDTSSIARGLFSALRSLDERNVSVIYIEGISDTEGDLAAAVMNRLRKAA 439 >gi|261195106|ref|XP_002623957.1| SUA5 [Ajellomyces dermatitidis SLH14081] gi|239587829|gb|EEQ70472.1| SUA5 [Ajellomyces dermatitidis SLH14081] Length = 490 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 85/271 (31%), Positives = 133/271 (49%), Gaps = 36/271 (13%) Query: 8 DSNALRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 ++ L +A E L + +P+A PTETVYGL D+ A++ +Y+ K+RP+ NPLI HVS Sbjct: 57 EAKVLLEAAEALRTSDIPVAFPTETVYGLGADATRSAAVQGIYKAKQRPSDNPLIVHVSS 116 Query: 67 ISMVKKHASVDPLSLH--------------------------LAKLFWPGPLTLVLDLLS 100 +++ SL L FWPGPLT++L + Sbjct: 117 REQLQRLLLSPSDSLRDGKSDSGTKRSQQGGETNLIPLIYEPLISRFWPGPLTIILPNPT 176 Query: 101 TTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSI 159 + + P T+ L T R+P + LI PLA PSAN S + S T +H+ + + Sbjct: 177 PSPLAPEVTSTLPTFGVRMPSSPLARLLIYLADRPLAAPSANASTKPSPTTAQHVYTD-L 235 Query: 160 CKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVE------LEYC 213 I +I+DGG S +G+EST+V+ +LRPGG+ IE ++ E + Sbjct: 236 QGRIDMILDGGPSGVGVESTVVDGLL-YPPAVLRPGGIGIEEIRACPGWEEVRIGYKDGA 294 Query: 214 VDETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244 + P++PGM HY+P+++V L + Sbjct: 295 LQGKEVPRAPGMKYKHYSPKAKVVLFEAGRD 325 Score = 68.9 bits (168), Expect = 9e-10, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 2/90 (2%) Query: 232 PRSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291 P + + + +R N+ I ++ A LF+ ++ D+ Sbjct: 395 PTNPFNSSSHVTGYQSTCLRLLPSIELNLGTPIELFDIYIGPDTDSIARGLFSALRGLDE 454 Query: 292 SGASSIAFSSIPNHG--LGIAINNRLERAA 319 S I I + L AI NRL +AA Sbjct: 455 KNVSIIYVEGISDTEGDLAAAIMNRLRKAA 484 >gi|308162394|gb|EFO64793.1| SUA5 protein [Giardia lamblia P15] Length = 369 Score = 245 bits (627), Expect = 6e-63, Method: Composition-based stats. Identities = 109/363 (30%), Positives = 162/363 (44%), Gaps = 53/363 (14%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 T + L A L G +AIPTETVYGLA D+ + TA +++ +K+RPA +PLI H+S Sbjct: 8 TTQSELADAAGALQRGDLVAIPTETVYGLAADALSETACVKIFALKQRPASDPLIVHISH 67 Query: 67 ISMVKKHA----SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 S + A V P+ LA FWPGPLT+VL + + TA +T R+P Sbjct: 68 SSQLPIIAVISTEVSPIVDALAATFWPGPLTMVLPAAPC--VPSIVTAGSQTVGVRMPRH 125 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 + +IE PLA PSAN G IS T + + + + ++ LI+DGG +G+EST++ Sbjct: 126 PVARAIIELAARPLAAPSANMFGSISPTQPEDVAAEFVNSDL-LIVDGGRCDVGIESTVL 184 Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-----------ETSTPQSPGMLKSHY 230 + + + ILR G + E L A+S+ + V ++ SPG HY Sbjct: 185 -LIEKDCLTILRRGQVTEEMLIAALSMNILNHVRIETRVLSSSDIQSKAVSSPGQFLRHY 243 Query: 231 APRSQVRL------------------------RAIHVNPREALIR-------FGNVPIKN 259 +PR+ L + NP A ++ + Sbjct: 244 SPRTVCYLVMKGGPMLPGAVRATLPAHLDGFVVVLDCNPAFAELKPDVLLKSLAGLLPAG 303 Query: 260 IENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI-PNHGLGIAINNRLERA 318 E + L L+ A LF ++ AD G + I P GL A+ +RL RA Sbjct: 304 TEPTRL-LRAYSAPTLEAVAQGLFEALRRADRLGPACILALPPQPARGLADALLDRLFRA 362 Query: 319 AAP 321 A Sbjct: 363 AGG 365 >gi|295673282|ref|XP_002797187.1| translation initiation protein Sua5 [Paracoccidioides brasiliensis Pb01] gi|226282559|gb|EEH38125.1| translation initiation protein Sua5 [Paracoccidioides brasiliensis Pb01] Length = 489 Score = 245 bits (627), Expect = 7e-63, Method: Composition-based stats. Identities = 83/265 (31%), Positives = 132/265 (49%), Gaps = 36/265 (13%) Query: 8 DSNALRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 ++ L ++ E L + +P+A PTETVYGL D+ A++ +Y+ K+RP+ NPLI HVS Sbjct: 57 EAKTLLESAEVLQTSDIPVAFPTETVYGLGADATRSAAVQGIYKAKQRPSDNPLIVHVSS 116 Query: 67 ISMVKKHAS--------------------------VDPLSLHLAKLFWPGPLTLVLDLLS 100 +++ + P+ L FWPGPLT++L + Sbjct: 117 REQLQRILQSNSSSTDHGGSDSRKTRNQGREETNLIPPIYEPLISKFWPGPLTIILPNPT 176 Query: 101 TTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSI 159 + + P T+ L T R+P + LI PLA PSAN S + S T +H+ + + Sbjct: 177 PSPLAPEVTSTLTTFGARMPSSPLARLLIHLADRPLAAPSANASTKPSPTTAQHVFTD-M 235 Query: 160 CKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL------EYC 213 I +I+DGG +G+EST+V+ ILRPGG+ IE ++ E + Sbjct: 236 QGRIDIILDGGPCGVGVESTVVDGLL-HPPAILRPGGIGIEEIRACPGWEDVRVGYKDGA 294 Query: 214 VDETSTPQSPGMLKSHYAPRSQVRL 238 + P++PGM HY+P+++V L Sbjct: 295 LQGKEAPRAPGMKYKHYSPKAKVVL 319 Score = 72.4 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Query: 259 NIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG--LGIAINNRLE 316 N+ + ++S + A LF+ ++ D+ S I I + L AI NRL Sbjct: 422 NLATPVELFDVSIGRDTESIARGLFSALRGLDEKNVSVIYVEGISDTEGYLAAAIMNRLR 481 Query: 317 RAA 319 +AA Sbjct: 482 KAA 484 >gi|226292280|gb|EEH47700.1| translation initiation protein Sua5 [Paracoccidioides brasiliensis Pb18] Length = 544 Score = 245 bits (626), Expect = 7e-63, Method: Composition-based stats. Identities = 85/265 (32%), Positives = 133/265 (50%), Gaps = 36/265 (13%) Query: 8 DSNALRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 ++ AL ++ E L + +P+A PTETVYGL D+ A++ +Y+ K+RPA NPLI HVS Sbjct: 112 EAKALLESAEALRMSDIPVAFPTETVYGLGADATRSAAVQGIYKAKQRPADNPLIVHVSS 171 Query: 67 ISMVKKHAS--------------------------VDPLSLHLAKLFWPGPLTLVLDLLS 100 +++ + P+ L FWPGPLT++L + Sbjct: 172 REQLQRILRSHSSRPDHGSSDSRKTGNQEREETNLIPPIYEPLISKFWPGPLTIILPNPT 231 Query: 101 TTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSI 159 + + P T+ L T R+P + LI PLA PSAN S + S T +H+ + + Sbjct: 232 PSPLAPEVTSTLTTFGARMPSSPLARLLIHLTDRPLAAPSANASTKPSPTTAQHVFTD-M 290 Query: 160 CKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL------EYC 213 I +I+DGG +G+EST+V+ ILRPGG+ IE ++ E + Sbjct: 291 QGRIDIILDGGPCGVGVESTVVDGLL-HPPAILRPGGIGIEEIRACPGWEDVRVGYKDGA 349 Query: 214 VDETSTPQSPGMLKSHYAPRSQVRL 238 + P++PGM HY+P+++V L Sbjct: 350 LQGKEAPRAPGMKYKHYSPKAKVVL 374 Score = 75.5 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 2/63 (3%) Query: 259 NIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG--LGIAINNRLE 316 N+ + ++S + A LF+ ++ D+ S I IP+ L AI NRL Sbjct: 477 NLATPVELFDVSIGRDTESIARGLFSALRGLDEENVSVIYVEGIPDTEGDLAAAIMNRLR 536 Query: 317 RAA 319 +AA Sbjct: 537 KAA 539 >gi|239610683|gb|EEQ87670.1| SUA5 [Ajellomyces dermatitidis ER-3] Length = 489 Score = 244 bits (625), Expect = 9e-63, Method: Composition-based stats. Identities = 84/270 (31%), Positives = 131/270 (48%), Gaps = 35/270 (12%) Query: 8 DSNALRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 ++ L +A E L + +P+A PTETVYGL D+ A++ +Y+ K+RP+ NPLI HVS Sbjct: 57 EAKVLLEAAEALRTSDIPVAFPTETVYGLGADATRSAAVQGIYKAKQRPSDNPLIVHVSS 116 Query: 67 ISMVKKHASVDPLSLH-------------------------LAKLFWPGPLTLVLDLLST 101 ++ S L FWPGPLT++L + Sbjct: 117 REQLRLLLSPSDSLRDGKSDSGTKRSQQGGETNLIPLIYEPLISRFWPGPLTIILPNPTP 176 Query: 102 TDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSIC 160 + + P T+ L T R+P + LI PLA PSAN S + S T +H+ + + Sbjct: 177 SPLAPEVTSTLPTFGVRMPSSPLARLLIYLADRPLAAPSANASTKPSPTTAQHVYTD-LQ 235 Query: 161 KEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVE------LEYCV 214 I +I+DGG S +G+EST+V+ +LRPGG+ IE ++ E + + Sbjct: 236 GRIDMILDGGPSGVGVESTVVDGLL-YPPAVLRPGGIGIEEIRACPGWEEVRIGYKDGAL 294 Query: 215 DETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244 P++PGM HY+P+++V L + Sbjct: 295 QGKEVPRAPGMKYKHYSPKAKVVLFEAGRD 324 Score = 68.9 bits (168), Expect = 9e-10, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 2/90 (2%) Query: 232 PRSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291 P + + + +R N+ I ++ A LF+ ++ D+ Sbjct: 394 PTNPFNSSSHVTGYQSTCLRLLPSIELNLGTPIELFDIYIGPDTDSIARGLFSALRGLDE 453 Query: 292 SGASSIAFSSIPNHG--LGIAINNRLERAA 319 S I I + L AI NRL +AA Sbjct: 454 KNVSIIYVEGISDTEGDLAAAIMNRLRKAA 483 >gi|261334880|emb|CBH17874.1| hypothetical protein, conserved [Trypanosoma brucei gambiense DAL972] Length = 379 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 109/373 (29%), Positives = 175/373 (46%), Gaps = 58/373 (15%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 I D + L A L G +A+PTETVYGL ++ + A+++++E+K RP+ +PLICHV Sbjct: 3 RIIDVSELDYAAHSLTRGGLVALPTETVYGLGGNALDERAVQQIFEVKGRPSTDPLICHV 62 Query: 65 SDISMVKKHAS--VDPLSLHLAK----LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 DI DP +L +AK WPGPLT+V + + + P T N R Sbjct: 63 PDIQRAVGLWDSNADPAALEVAKWIGDAIWPGPLTIVF--RANSVLPPSVTGNSGYVGVR 120 Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP--LIIDGGISKIG 175 +P +L++ P+A PSAN G +S T +H+L + + P L+IDGG S IG Sbjct: 121 IPNHPIALQLLQLVNFPVAAPSANTFGHVSPTTAEHVLRD-LGERCPSLLVIDGGHSNIG 179 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELE---YCVDETSTP----QS---PGM 225 +EST++ V KV ILR G + + L++ I + E D S P + PG Sbjct: 180 IESTVLKVASATKVEILRRGKVSLADLQQVIWKKFECHITVRDTRSCPGTVDMAMDGPGQ 239 Query: 226 LKSHYAP----------RSQVRLRAIHVNP------------------REALIRFGNVPI 257 L +HY+P + + ++ + +I FG + Sbjct: 240 LLTHYSPSVLSGMLTPKSTNCEVHQNELDKAVVELPSTPPLTGGVPLNQTVIIDFGGLLQ 299 Query: 258 KNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSIAFSSIPN-------HGLGI 309 + + +LS G++++A F +F ++ ++ SGA + F I L Sbjct: 300 RFQRVCLAYRDLSAEGEVQQACFAVFEALRWSETVSGAGVVLFPLISEWPCKTGDEELLA 359 Query: 310 AINNRLERAAAPR 322 A+ +RL RAA+ + Sbjct: 360 AVEDRLFRAASGK 372 >gi|71010426|ref|XP_758389.1| hypothetical protein UM02242.1 [Ustilago maydis 521] gi|46098131|gb|EAK83364.1| hypothetical protein UM02242.1 [Ustilago maydis 521] Length = 516 Score = 243 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 88/274 (32%), Positives = 136/274 (49%), Gaps = 39/274 (14%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 I S N+L KA L A +A P+ETVYGL ++ + +A ++Y KKRPA NPLI Sbjct: 54 ISSPVTRNSLDKAASHLRASQLVAFPSETVYGLGANALSQSAASKIYAAKKRPADNPLIV 113 Query: 63 HVSDISMVKKH----ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACF 117 HVSD+ M+ ++ L K FWPG LTL+ + + P + T + Sbjct: 114 HVSDLEMLDTLLPQSYTMSQAYSDLIKAFWPGALTLLFPVDTQRPAVPTVVTCGHPSVAV 173 Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP------------ 164 R+P + LI G P+A PSAN SG+ S T H+L + ++ Sbjct: 174 RMPSHPIARALIAISGLPMAGPSANASGRPSPTTAGHVLRD-LGGQLDAESSSADASQAP 232 Query: 165 -----LIIDGGISKIGLESTIVN-VQCEKKVRILRPGGLEIETLKRAI------------ 206 I+DGG ++G+EST+++ + +VR+LRPGG+ +E + + Sbjct: 233 KGRLRYILDGGACQVGVESTVIDGITAADEVRVLRPGGVTVEQIASVLDKAGLANKVKLR 292 Query: 207 --SVELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238 ++E V++ S P +PGM HY+P ++V L Sbjct: 293 VYGKDMERSVEQESNPTTPGMKYRHYSPTARVVL 326 Score = 72.4 bits (177), Expect = 8e-11, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 38/73 (52%), Gaps = 7/73 (9%) Query: 255 VPIKNIENA-IISLNLSKTGKLKEAAFNLFNYMKIADD------SGASSIAFSSIPNHGL 307 + ++ +EN + +L +G + A +F+ ++ D+ I ++ + G+ Sbjct: 437 LALEQLENVRVHPFDLGPSGSAEVYAQRMFDGLRTLDEGPLHGADRCDLIFVEAMDDAGV 496 Query: 308 GIAINNRLERAAA 320 G+A+ NRL++AA+ Sbjct: 497 GLAVMNRLKKAAS 509 >gi|327541326|gb|EGF27868.1| Translation factor, SUA5 type [Rhodopirellula baltica WH47] Length = 372 Score = 243 bits (620), Expect = 4e-62, Method: Composition-based stats. Identities = 103/348 (29%), Positives = 161/348 (46%), Gaps = 35/348 (10%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +I+ T ++R A + L G I +PTETVYGLA P ++ +++ K+RP+ NPLI Sbjct: 21 KILPAT-PESIRLAGQALRDGKLIGLPTETVYGLAARGDQPDSVAKIFAAKQRPSTNPLI 79 Query: 62 CHVSDISMVKKHASVD-PLSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 HV D S V +D ++ + WPGPLTLVL + + TA T Sbjct: 80 LHVGDASAVHPLVVLDSAITRRRFEAASSLWPGPLTLVLP--KSEAVLDCVTAGGNTVAV 137 Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 RVP +L+ P+A PSAN S +S T +H+ + + I ++DGG+ +GL Sbjct: 138 RVPAHPVALQLLREVSLPIAAPSANVSNYVSPTRPEHV-TDGLADCIEWVLDGGVCDVGL 196 Query: 177 ESTIVNVQCEK-KVRILRPGGLEIETLKRAISVEL--------EYCVDETSTPQS-PGML 226 EST++++ ILR G L L+ + E + P + PG+ Sbjct: 197 ESTVLSIADPNAPPTILREGVLSATKLESVFGEPVLSASSSNMELPHPPSDAPAASPGLH 256 Query: 227 KSHYAPRSQVRL--RAIHVNPREALIRFGNVPIKNIENAII----SLNLSKTGKLKEAAF 280 + HY+PR+ +RL H +P +R + ++ N++ +LS G E A Sbjct: 257 RRHYSPRTPLRLVRETEHASPANNDLRVLRIRLRGPANSLPGYADVWSLSAVGDPLEIAN 316 Query: 281 NLFNYMKIADDSGASSI---------AFSSIPNHGLGIAINNRLERAA 319 L+ ++ AD I S N L AI++RL RA+ Sbjct: 317 RLYETLRRADSGEFDQIEIDQMNVEDWIES-GNANLIAAISDRLHRAS 363 >gi|160896437|ref|YP_001562019.1| Sua5/YciO/YrdC/YwlC family protein [Delftia acidovorans SPH-1] gi|160362021|gb|ABX33634.1| Sua5/YciO/YrdC/YwlC family protein [Delftia acidovorans SPH-1] Length = 332 Score = 242 bits (619), Expect = 5e-62, Method: Composition-based stats. Identities = 95/316 (30%), Positives = 146/316 (46%), Gaps = 21/316 (6%) Query: 21 AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL- 79 G + +PTETVYGLA D+ N A+ +++ K RP +PLI HV+D + ++A PL Sbjct: 20 RGELLGLPTETVYGLAADADNDAAVAQIFTAKGRPPNHPLIVHVADSGAITRYAREVPLF 79 Query: 80 SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK----KLIETYGHPL 135 + L FWPGPLTL+L L ST + R P P+ Sbjct: 80 AQQLIDAFWPGPLTLILPRLP--QAARASTGGQDSVGLRCPSHPVAHAVLAACRQLQPPV 137 Query: 136 A---IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192 PSAN+ G++S T H+ + L++DGG ++G+ESTIV+ V +L Sbjct: 138 WGVSAPSANKFGRVSPTTAAHVADEF--GDTLLVLDGGACEVGIESTIVDCTRGVPV-LL 194 Query: 193 RPGGLEIETLKRAIS-VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIR 251 RPG + + ++RA L + +TP++ G L +HYAP +QVRL + Sbjct: 195 RPGAITRDDIERACGQRPLSKEELQENTPRASGTLLAHYAPNAQVRLMDARQLQAGLDVL 254 Query: 252 FGNVPIKNIENAIISLNLSKTGKLK-------EAAFNLFNYMKIADDSGASSIAFSSIPN 304 + + + S+ L+ A LF ++ D+ GA I + P+ Sbjct: 255 GADARNLAVYHRTPLRTASRAVTLRAMPADAAATARELFGALRDFDEVGARLIWIETPPD 314 Query: 305 HGLGIAINNRLERAAA 320 + +RL RAAA Sbjct: 315 TPDWEGVRDRLLRAAA 330 >gi|71756077|ref|XP_828953.1| hypothetical protein [Trypanosoma brucei TREU927] gi|70834339|gb|EAN79841.1| hypothetical protein, conserved [Trypanosoma brucei] Length = 379 Score = 242 bits (618), Expect = 6e-62, Method: Composition-based stats. Identities = 108/373 (28%), Positives = 174/373 (46%), Gaps = 58/373 (15%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 I D + L A L G +A+PTETVYGL ++ + A+++++E+K RP+ +PLICHV Sbjct: 3 RIIDVSELDYAAHSLTRGGLVALPTETVYGLGGNALDERAVQQIFEVKGRPSTDPLICHV 62 Query: 65 SDISMVKKHAS--VDPLSLHLAK----LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 DI DP +L +AK WPGPLT+V + + + P T N R Sbjct: 63 PDIQRAVGLWDSNADPAALEVAKWIGDAIWPGPLTIVF--RANSVLPPSVTGNSGYVGVR 120 Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP--LIIDGGISKIG 175 +P +L++ P+A PSAN G +S T +H+L + + P L+IDGG S IG Sbjct: 121 IPNHPIALQLLQLVNFPVAAPSANTFGHVSPTTAEHVLRD-LGERCPSLLVIDGGHSNIG 179 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELE---YCVDETSTP----QS---PGM 225 +EST++ V KV ILR G + + L++ I + D S P + PG Sbjct: 180 IESTVLKVASATKVEILRRGKVSLADLQQVIWKKFACHITVRDTRSCPGTVDMAMDGPGQ 239 Query: 226 LKSHYAP----------RSQVRLRAIHVNP------------------REALIRFGNVPI 257 L +HY+P + + ++ + +I FG + Sbjct: 240 LLTHYSPSVLSGMLTPKSTNCEVHQNELDKAVVELPSTPPLTGGVPLNQTVIIDFGGLLQ 299 Query: 258 KNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSIAFSSIPN-------HGLGI 309 + + +LS G++++A F +F ++ ++ SGA + F I L Sbjct: 300 RFQRVCLAYRDLSAEGEVQQACFAVFEALRWSETVSGAGVVLFPLISEWPCKTGDEELLA 359 Query: 310 AINNRLERAAAPR 322 A+ +RL RAA+ + Sbjct: 360 AVEDRLFRAASGK 372 >gi|32474396|ref|NP_867390.1| translation factor [Rhodopirellula baltica SH 1] gi|32444934|emb|CAD74936.1| putative translation factor [Rhodopirellula baltica SH 1] Length = 372 Score = 242 bits (618), Expect = 7e-62, Method: Composition-based stats. Identities = 103/348 (29%), Positives = 162/348 (46%), Gaps = 35/348 (10%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +I+ T ++R A + L G I +PTETVYGLA P ++ +++ K+RP+ NPLI Sbjct: 21 KILPAT-PESIRLAGQALRDGRLIGLPTETVYGLAARGDQPDSVAKIFAAKQRPSTNPLI 79 Query: 62 CHVSDISMVKKHASVD-PLSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 HV D S V +D ++ + WPGPLTLVL + + TA T Sbjct: 80 LHVGDASAVHPLVVLDSAITRRRFEAASSLWPGPLTLVLP--KSEAVLDCVTAGGNTVAV 137 Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 RVP +L+ P+A PSAN S +S T +H+ + + + I ++DGG+ +GL Sbjct: 138 RVPAHPVALQLLREVSLPIAAPSANVSNYVSPTRPEHV-TDGLAECIEWVLDGGVCDVGL 196 Query: 177 ESTIVNVQCEK-KVRILRPGGLEIETLKRAISVE--------LEYCVDETSTPQS-PGML 226 EST++++ ILR G L L+ +E + P + PG+ Sbjct: 197 ESTVLSIADPNAPPTILREGVLSATKLESVFGEPVLSGSSSNIELPHPPSDAPAASPGLH 256 Query: 227 KSHYAPRSQVRL--RAIHVNPREALIRFGNVPIKNIENAII----SLNLSKTGKLKEAAF 280 + HY+PR+ +RL H +P +R + ++ N++ +LS G E A Sbjct: 257 RRHYSPRTPLRLVRETEHASPANNDLRVLRIRLRGPANSLPGYADVWSLSAVGDPLEIAN 316 Query: 281 NLFNYMKIADDSGASSI---------AFSSIPNHGLGIAINNRLERAA 319 L+ ++ AD I S N L AI++RL RA+ Sbjct: 317 RLYETLRRADSGEFDQIEIDQMNVEDWIES-GNANLIAAISDRLHRAS 363 >gi|66828913|ref|XP_647810.1| hypothetical protein DDB_G0278955 [Dictyostelium discoideum AX4] gi|60470098|gb|EAL68079.1| hypothetical protein DDB_G0278955 [Dictyostelium discoideum AX4] Length = 403 Score = 241 bits (617), Expect = 9e-62, Method: Composition-based stats. Identities = 98/387 (25%), Positives = 163/387 (42%), Gaps = 67/387 (17%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +I++ T N + +A + G +A PTETVYGL ++ + A+ +++ K RP +P+I Sbjct: 9 KIVNPTLENLI-EAGNKIKNGGLVAFPTETVYGLGANALDKDAVLSIFKAKGRPLTDPVI 67 Query: 62 CHVSDISMVKKHASVDPLSLH----LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 H+ + K + L+ FWPGPLT+V S+ I + TA Sbjct: 68 VHIIESEYALKLLKLTEKQKEIFQVLSDNFWPGPLTIV--AKSSELIPMIVTAETGYVGV 125 Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEI------------- 163 R P ++LI+ G P+A PSANR G +S T H+L I Sbjct: 126 RFPNHPLAQQLIKHSGKPIAAPSANRFGHVSPTTANHVLDDLADSPITILNSINNNSSCD 185 Query: 164 ---------PLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV 214 + KIG+EST++ + + ++ ILR GG+ ++LK I+ + + + Sbjct: 186 NKDIDDNNNNTKEEEEACKIGIESTVLKIVSDSELVILRRGGVSEKSLKCVINNKFKDTI 245 Query: 215 DETSTPQ-----------SPGMLKSHYAPRSQVRLRAIHVN------------------- 244 TS + +PG L +HYAP Q + +N Sbjct: 246 QITSINKTVENTTSQGQEAPGQLLTHYAPDIQTFILDNILNSENDNNNNNNKNNDNSLDL 305 Query: 245 PREALIRFGNVPIKNIENAIISL-NLSKTGKLKEAAFNLFNYMKIAD-DSGASSIAF--- 299 I FGN +N ++ +LS+ + EAA LF ++ ++ GA I Sbjct: 306 KECVYIDFGNQLPNEFKNQCLAYRDLSENKNILEAANQLFAVLRWSENQEGAKIILLPDL 365 Query: 300 --SSIPNHGLGIAINNRLERAAAPRNQ 324 + A+ +R+ RAA+ + Sbjct: 366 RKEPFKSLDNSEAVFDRIFRAASGKQA 392 >gi|332525423|ref|ZP_08401583.1| Sua5/YciO/YrdC/YwlC family protein [Rubrivivax benzoatilyticus JA2] gi|332108692|gb|EGJ09916.1| Sua5/YciO/YrdC/YwlC family protein [Rubrivivax benzoatilyticus JA2] Length = 323 Score = 241 bits (617), Expect = 9e-62, Method: Composition-based stats. Identities = 97/332 (29%), Positives = 150/332 (45%), Gaps = 21/332 (6%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I+ T ++ A E L G +A PTETVYGL + A ++ +K RP +PL Sbjct: 1 MPILDGTKPASITSAAERLRDGGLVAFPTETVYGLGARADRDVATAAVFAVKGRPDDHPL 60 Query: 61 ICHVSDISMVKKHASVD-PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I HV+D + V + A P++ L FWPGPLTL+L + T R+ Sbjct: 61 IVHVADAAAVTEFAEPPGPVAQALMARFWPGPLTLILRRREGRGEA--AAGGQDTIGLRL 118 Query: 120 PCG-FTKKLIE---TYGHP-LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174 P L+ G P +A PSANR G++S T H++ LI+DGG ++ Sbjct: 119 PSHPVALALLREAARLGVPGVAAPSANRFGRVSPTTAAHVVGEFGDGL--LIVDGGACEV 176 Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRS 234 G+ES IV+ E+ +LRPG L+ ++ I L +P++ G L+SHYAP + Sbjct: 177 GIESAIVDCSGERPA-LLRPGALDRREIEAVIGAPL--AAAGADSPRASGTLESHYAPAA 233 Query: 235 QVR------LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKI 288 ++R L A+ P A + + + +++ + ++ Sbjct: 234 RIRLLDTASLMAVLRKPVPAGVAVYSRVVPPPGSSVQHRPMPADPAAAAHELF--AALRG 291 Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 D GAS + P + +RL RAAA Sbjct: 292 FDAGGASLVWVEQPPAGPEWDGVRDRLTRAAA 323 >gi|115372429|ref|ZP_01459738.1| Sua5/YciO/YrdC/YwlC [Stigmatella aurantiaca DW4/3-1] gi|115370642|gb|EAU69568.1| Sua5/YciO/YrdC/YwlC [Stigmatella aurantiaca DW4/3-1] Length = 297 Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 102/300 (34%), Positives = 148/300 (49%), Gaps = 14/300 (4%) Query: 33 YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGP 91 YGLA ++ + A+RR++ IK RPA +PLI H+ + + A + P + LA FWPGP Sbjct: 2 YGLAANAEDELAVRRVFAIKGRPATHPLIVHLPQAEALPRWARDIPPEAWKLAAAFWPGP 61 Query: 92 LTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITN 150 LTLVL T+ T T RVP ++ G LA PSANR G++S T Sbjct: 62 LTLVLRR--TSRATDAVTGGQDTVALRVPNHPLALAVLSALGGGLAAPSANRFGRVSPTT 119 Query: 151 VKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL 210 H+ + ++ LI+DGG +G+ESTIV++ ILRPGGL E L+ + + Sbjct: 120 AGHV-REDLGSDVDLILDGGPCTVGVESTIVDLSSGDPA-ILRPGGLAAEELEHVLGRPV 177 Query: 211 EYCVDETSTPQSPGMLKSHYAPRSQVRLRAI------HVNPREALIRFGNVPIKNIENAI 264 V TS+ + G L SHYAPR+ V L + R +R G + ++ Sbjct: 178 P--VRATSSVRVSGSLASHYAPRAGVTLVEVPEAAARAQALRGQGLRVGVLGPASLALPP 235 Query: 265 ISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQ 324 AA +L+ ++ AD +G + GLG+A+ +RL RAAAPR Sbjct: 236 GVPRFDMPEDPAGAAHDLYLRLREADLAGLDLLLACLPSARGLGLAVRDRLARAAAPRTS 295 >gi|183221225|ref|YP_001839221.1| putative translation factor SUA5 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|167779647|gb|ABZ97945.1| Putative translation factor SUA5 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 318 Score = 240 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 97/321 (30%), Positives = 147/321 (45%), Gaps = 33/321 (10%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 + PTETV+G+ S N A R+Y+IK RP+ NPLI H S I +KK V+ ++ L Sbjct: 2 VVFPTETVFGIGAASDNEDACLRIYQIKGRPSDNPLIAHFSSIDAIKKVCYVNEVANQLL 61 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRS 143 F PGP TLVL + L T R+P ++ IE G P++ PSAN S Sbjct: 62 CEFSPGPFTLVLPKTD----PKIFPKQLPTLAVRIPKNPVIREWIEACGSPISAPSANLS 117 Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203 G+ S+T + ++ + I+ +G+EST++ + E V +LRPG +E + L+ Sbjct: 118 GRPSLTRMTDVVR-YFDGIVDGILIAEEPNLGIESTVLGLTTEVPV-LLRPGSIESQALR 175 Query: 204 R-----AISVELEYCVDETS--------TPQSPGMLKSHYAPRSQVRLRAIH-------- 242 R I E++ ++ P SPGM HYAP ++V L Sbjct: 176 RFLPNLVIPNEIKSKDSKSEDSKTNQSFVPLSPGMKYKHYAPNAKVVLLETEIFLSTFSK 235 Query: 243 --VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300 ++P+ A I F E + L + A L+ + + D G + I Sbjct: 236 QGMDPKFAWIGFSFGSKTLPEVLGGNRVLCVANNIDYMAK-LYAFFESCDLEGYNRIYCE 294 Query: 301 SIPNHGLG-IAINNRLERAAA 320 +P G + NRLE+AAA Sbjct: 295 -MPREEEGREGLLNRLEKAAA 314 >gi|330799541|ref|XP_003287802.1| hypothetical protein DICPUDRAFT_151977 [Dictyostelium purpureum] gi|325082178|gb|EGC35669.1| hypothetical protein DICPUDRAFT_151977 [Dictyostelium purpureum] Length = 382 Score = 240 bits (613), Expect = 3e-61, Method: Composition-based stats. Identities = 90/372 (24%), Positives = 160/372 (43%), Gaps = 48/372 (12%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +I+ + N + +A + + G ++ PTETVYGL ++ + A+ +++ K RP +P+I Sbjct: 9 KIVEPSIENII-EAGKKIKDGGLVSFPTETVYGLGANALDEKAVLSIFQSKGRPLTDPVI 67 Query: 62 CHVSDISMVKKHASVDPLSLH----LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 HV D K + L WPGPLT+V S+ I + TA Sbjct: 68 VHVIDSEYAKTLLQLTDKQKMIFKVLTDNLWPGPLTIV--AKSSELIPMIVTAQTGYVGV 125 Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG-----I 171 R P + LI+ G P+A PSANR G +S T H+ + I+D Sbjct: 126 RYPKHDLAQLLIKHSGKPIAAPSANRFGHVSPTRAMHVF-DDLGHSDITILDCNEKYQSP 184 Query: 172 SKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAI-----------SVELEYCVDETSTP 220 KIG+EST++ + + + ILR GG ++++ I ++ + Sbjct: 185 CKIGIESTVLKIVSDDHLVILRKGGHSEKSIREIIDKHFGNEIRIEAINKTVSNQTSEGQ 244 Query: 221 QSPGMLKSHYAPRSQVRL----------------RAIHVNPREALIRFGNVPIKNIENAI 264 ++PG L +HYAP Q + + I FGN +N Sbjct: 245 EAPGQLLTHYAPDIQTFILENTLTNNIDNNSNNSSSNIDFSECVYIDFGNQLPMEFKNKC 304 Query: 265 ISL-NLSKTGKLKEAAFNLFNYMKIADD-SGASSIAF-----SSIPNHGLGIAINNRLER 317 ++ +LS++ ++EA+ LF+ ++ +++ A I A+ +R+ R Sbjct: 305 LAYKDLSESCNIEEASGELFSVLRWSENVKNAKIILLPDLRKEQFKQLDNSEAVFDRIFR 364 Query: 318 AAAPRNQSQRIV 329 A++ + S ++ Sbjct: 365 ASSGKYASLSLI 376 >gi|171057058|ref|YP_001789407.1| Sua5/YciO/YrdC/YwlC family protein [Leptothrix cholodnii SP-6] gi|170774503|gb|ACB32642.1| Sua5/YciO/YrdC/YwlC family protein [Leptothrix cholodnii SP-6] Length = 346 Score = 239 bits (611), Expect = 4e-61, Method: Composition-based stats. Identities = 87/324 (26%), Positives = 142/324 (43%), Gaps = 30/324 (9%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV-SDISMVKKHASVDPLS 80 G +A PTETVYGL + + A+ +++ K RP+ +PLI HV S + A + P++ Sbjct: 27 GELVAFPTETVYGLGARADDADAVVKIFAAKGRPSDHPLIVHVADAASALAFAAELPPVA 86 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-----KKLIETYGHPL 135 L FWPGPL+LV+ + D+ + + R P + + Sbjct: 87 RRLMDAFWPGPLSLVVPRRA--DVAAAAAGGQSSVGLRCPAHPVAQALLRAAAAAGVPGV 144 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 A PSANR G++S T H++ ++DGG ++G+ES IV+ V +LRPG Sbjct: 145 AAPSANRFGRVSPTRAAHVIDEFADLADLPVLDGGDCELGIESAIVDCTRGYPV-LLRPG 203 Query: 196 GLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNV 255 L ++ A L + P++ G L++HYAPR++VRL + G++ Sbjct: 204 CLGAAQIEAAAGEPLRSR--DEQAPRASGTLEAHYAPRAKVRLMDRQQIQTALQVLHGSL 261 Query: 256 ---PIKNIENAIISLNLSKTG----------------KLKEAAFNLFNYMKIADDSGASS 296 ++L + G AA LF ++ DD+ Sbjct: 262 PAGKAARAAAPGLTLAVYSRGPRPASQPGVLWRTMPADAGAAAHELFGVLRELDDALVQL 321 Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320 I P+ + +RL+RA+A Sbjct: 322 IWVEQPPSEPAWDGVRDRLQRASA 345 >gi|212528906|ref|XP_002144610.1| translation initiation protein Sua5 [Penicillium marneffei ATCC 18224] gi|210074008|gb|EEA28095.1| translation initiation protein Sua5 [Penicillium marneffei ATCC 18224] Length = 426 Score = 239 bits (610), Expect = 5e-61, Method: Composition-based stats. Identities = 84/251 (33%), Positives = 124/251 (49%), Gaps = 17/251 (6%) Query: 24 PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH--------AS 75 P+ PTETVYGL D+ +++ +Y+ KKRP+ NPLI HV I MV + Sbjct: 55 PVGFPTETVYGLGADATRSGSVQGIYKAKKRPSDNPLIVHVDSIEMVNRLLNPDGNSTTK 114 Query: 76 VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHP 134 + + L FWPG LT++L + + TANL T R+P F + LI P Sbjct: 115 IPTIYEPLISRFWPGALTILLPNPKGSLLAKEVTANLPTFGVRMPSSAFARLLIHVTDRP 174 Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194 LA PSAN S + S T +H+ + I LI+DGG +G+EST+V+ + ILRP Sbjct: 175 LAAPSANASTKPSPTTAQHVY-HDLQGRIDLILDGGPCGVGVESTVVDGLSDPPA-ILRP 232 Query: 195 GGLEIETLKRAISVEL------EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248 GG+ IE +K E + + P++PGM HY+P+++V L + Sbjct: 233 GGIGIEEIKTCPGWENVQVGYHDNALQSKEAPRAPGMKYKHYSPKARVVLFEAGSDLELV 292 Query: 249 LIRFGNVPIKN 259 + + N Sbjct: 293 AAQVKQESVSN 303 Score = 76.6 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 4/72 (5%) Query: 250 IRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI--PNHGL 307 IR +VPI++I I + L + + A LF ++ D +I I L Sbjct: 351 IRQISVPIEDIPTTIYDVQLGSSA--ESIARGLFAALRSLDAENVDAIYIEGIRDDEGDL 408 Query: 308 GIAINNRLERAA 319 A+ NRL +AA Sbjct: 409 SAAVMNRLRKAA 420 >gi|189211403|ref|XP_001942032.1| translation initiation protein Sua5 [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187978125|gb|EDU44751.1| translation initiation protein Sua5 [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 507 Score = 239 bits (610), Expect = 5e-61, Method: Composition-based stats. Identities = 82/258 (31%), Positives = 133/258 (51%), Gaps = 26/258 (10%) Query: 12 LRKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 +++A + L P+A PTETVYGL D+ A++ ++ K RPA NPLI HV + + Sbjct: 105 MKRAAKELQDTNNPVAFPTETVYGLGADATRSAAVKEIFARKGRPADNPLIVHVHSLPQL 164 Query: 71 KKHAS----------------VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT 114 + + + + + + FWPGP+T++L + + + P TA L T Sbjct: 165 RALLAGRLEAEGDGKILGKDPIPEIYRPVIERFWPGPITIILPVPQNSILAPEVTAGLST 224 Query: 115 ACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173 R+P L+ G PLA PSAN S + S T +H+ + +++ LIIDGG + Sbjct: 225 FGARMPRSIIALSLLRLCGRPLAAPSANASTRPSPTAAEHV-HDDLREKLDLIIDGGPCE 283 Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVE------LEYCVDETSTPQSPGMLK 227 +G+EST+V+ ILRPGG+ +E L++ E + +++S P++PGM Sbjct: 284 VGVESTVVDGLSNPPA-ILRPGGVTVEQLRQCPGWESVIVGYKDKQAEDSSKPRAPGMKY 342 Query: 228 SHYAPRSQVRLRAIHVNP 245 HY+P++ V L N Sbjct: 343 RHYSPKASVLLFESGANK 360 Score = 71.6 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 3/61 (4%) Query: 262 NAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPN---HGLGIAINNRLERA 318 AI ++ K ++ A LF+ ++ D +I I + + A+ NRL +A Sbjct: 443 GAIQVWDIDLGAKTEDVARGLFSALRELDKKAVETIYVEGIDDKTGDDIAAAVMNRLRKA 502 Query: 319 A 319 A Sbjct: 503 A 503 >gi|149921509|ref|ZP_01909960.1| Sua5/YciO/YrdC/YwlC [Plesiocystis pacifica SIR-1] gi|149817584|gb|EDM77052.1| Sua5/YciO/YrdC/YwlC [Plesiocystis pacifica SIR-1] Length = 356 Score = 239 bits (610), Expect = 6e-61, Method: Composition-based stats. Identities = 103/324 (31%), Positives = 156/324 (48%), Gaps = 25/324 (7%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLS 80 G +A PTETVYGL ++ +P A+ +Y K RP+ NPLI HV D + A+ PL+ Sbjct: 36 GRLVAFPTETVYGLGANALDPRAVAGIYAAKGRPSTNPLIVHVRDSDHARTLVAAWPPLA 95 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPLAIPS 139 LA+ FWPGPLTLVL + L +A L T R P + L+ PLA PS Sbjct: 96 QALAEAFWPGPLTLVLPKRG--LVPDLVSAGLDTVGVRAPAHPVAQALLRAALLPLAAPS 153 Query: 140 ANRSGQISITNVKHILS--SSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197 ANRS IS T H+ + + + I+DGG +++G+EST++++ + +LR GG+ Sbjct: 154 ANRSQAISPTTAAHVARSLAHVDADALTILDGGTTRVGIESTVLDLSRGQP-TVLRLGGV 212 Query: 198 EIETLKRAISVELEYCV---------DETSTPQ-SPGMLKSHYAPRSQVRLRAIH----- 242 L+ ++ E +T + SPGM HYAP QV L + Sbjct: 213 STRALEAELARHPELGARLVHATNGSKDTEVARPSPGMDARHYAPAGQVLLAPLDTLRAR 272 Query: 243 -VNPREALIRFGNVPIKNIENAIISLN--LSKTGKLKEAAFNLFNYMKIADDSGASSIAF 299 +AL R + A+ +++ L + A L+ + D+ G S+ Sbjct: 273 LERDGDALPRPLGALTRGDVEALGAVDHHLRMPDDASDYASMLYAALHTLDELGCGSVLI 332 Query: 300 SSIPNHGLGIAINNRLERAAAPRN 323 ++P+ A+ +RL RAA PR Sbjct: 333 EAVPDAPSWAAVADRLRRAATPRG 356 >gi|330916672|ref|XP_003297514.1| hypothetical protein PTT_07940 [Pyrenophora teres f. teres 0-1] gi|311329751|gb|EFQ94374.1| hypothetical protein PTT_07940 [Pyrenophora teres f. teres 0-1] Length = 447 Score = 238 bits (609), Expect = 7e-61, Method: Composition-based stats. Identities = 82/255 (32%), Positives = 133/255 (52%), Gaps = 26/255 (10%) Query: 8 DSNALRKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 D+ +++A + L P+A PTETVYGL D+ A++ ++ K RPA NPLI HV Sbjct: 41 DAGIMKRAAKELQDTNNPVAFPTETVYGLGADATRSAAVKEIFARKGRPADNPLIVHVHS 100 Query: 67 ISMVKKHA----------------SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA 110 + ++ + + + + FWPGP+T++L + + + P TA Sbjct: 101 LPQLRALLVGKLEAEGDGKIAGKDPIPEIYRPVIECFWPGPITIILPVPKNSILAPEVTA 160 Query: 111 NLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169 L T R+P L+ G PLA PSAN S + S T +H+ + +++ LIIDG Sbjct: 161 GLSTFGARMPRSIIALSLLRLCGRPLAAPSANASTRPSPTAAEHV-HDDLREKLDLIIDG 219 Query: 170 GISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVE------LEYCVDETSTPQSP 223 G ++G+EST+V+ ILRPGG+ +E L++ E + +++S P++P Sbjct: 220 GPCEVGVESTVVDGLSSPPA-ILRPGGVTVEQLRQCPGWESVVVGYKDKQAEDSSKPRAP 278 Query: 224 GMLKSHYAPRSQVRL 238 GM HY+P++ V L Sbjct: 279 GMKYRHYSPKASVLL 293 Score = 71.2 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 3/61 (4%) Query: 262 NAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPN---HGLGIAINNRLERA 318 AI ++ K ++ A LF+ ++ D +I I + + A+ NRL +A Sbjct: 383 GAIQVWDIDLGAKTEDVARGLFSALRELDKKAVETIYVEGIDDKTGDDIAAAVMNRLRKA 442 Query: 319 A 319 A Sbjct: 443 A 443 >gi|322824288|gb|EFZ29735.1| hypothetical protein TCSYLVIO_3990 [Trypanosoma cruzi] Length = 384 Score = 238 bits (608), Expect = 9e-61, Method: Composition-based stats. Identities = 109/380 (28%), Positives = 169/380 (44%), Gaps = 59/380 (15%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 I ++ L +A + L G +AIPTETVYGL ++ N A+ +++ +K RP +PLICHV Sbjct: 3 RIISASELERAADALARGNLVAIPTETVYGLGGNALNKEAVEKIFTVKGRPLTDPLICHV 62 Query: 65 SDISMVKKHASV--DPLSLHLAK----LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 SD+ V DP ++ LA+ WPGPLT+VL + + T R Sbjct: 63 SDVEKAMDLWDVHADPEAVELARVLGTAIWPGPLTIVL--RANPLLPNSVTGGSGFVGAR 120 Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP--LIIDGGISKIG 175 +P T +L++ P+A PSAN G +S T H+L + + LI+DGG IG Sbjct: 121 IPRHEITLRLLQLVNFPVAAPSANTFGHVSPTTADHVLKD-LGPKDSSLLIVDGGPCDIG 179 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEY----------CVDETSTPQSPGM 225 +EST+V V + V ILR GG+ + + RA+ + + PG Sbjct: 180 IESTVVKVNNVESVEILRRGGVTLTEVLRALGDKFHPLITIRDTRLRHLSPEMAMDGPGQ 239 Query: 226 LKSHYAPRSQVRL-----------------------RAIHVNPREALIR------FGNVP 256 L +HY+P RL + P E L+R FG Sbjct: 240 LLTHYSPSVPSRLLTPSSFTTNLPMDPEGALVEFSSNSSVAAPTEVLLRHTVIIDFGGKL 299 Query: 257 IKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSI---AFSSIP----NHGLG 308 + +LS +++EA F +F+ ++ + GA + S P + L Sbjct: 300 QCLKPGCLAYRDLSVNAQVREACFAVFDALRWTETIPGAEVVLFPLVSGWPHASVDTDLL 359 Query: 309 IAINNRLERAAAPRNQSQRI 328 A+ +RL RAA+ + R+ Sbjct: 360 AAVEDRLFRAASGKVARIRM 379 >gi|71421441|ref|XP_811801.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70876508|gb|EAN89950.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 384 Score = 238 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 110/380 (28%), Positives = 169/380 (44%), Gaps = 59/380 (15%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 I ++ L KA + L G +AIPTETVYGL ++ N A+ +++ +K RP +PLICHV Sbjct: 3 RIISASELEKAADALARGNLVAIPTETVYGLGGNALNKEAVEKIFIVKGRPLTDPLICHV 62 Query: 65 SDISMVKKHASV--DPLSLHLAK----LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 SD+ V DP ++ LA+ WPGPLT+VL + + T R Sbjct: 63 SDVEKAMDLWDVHADPEAVELARVLGTAIWPGPLTIVL--RANPLLPNSVTGGSGFVGAR 120 Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP--LIIDGGISKIG 175 +P T +L++ P+A PSAN G +S T H+L + + LI+DGG IG Sbjct: 121 IPRHEITLRLLQLVNFPVAAPSANTFGHVSPTTADHVLKD-LGPKDSSLLIVDGGPCDIG 179 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEY----------CVDETSTPQSPGM 225 +EST+V V + V ILR GG+ + + RA+ + + PG Sbjct: 180 IESTVVKVNNVESVEILRRGGVTLTEVLRALGDKFHPLITIRDTRLRHLSPEMAMDGPGQ 239 Query: 226 LKSHYAPRSQVRL-----------------------RAIHVNPREALIR------FGNVP 256 L +HY+P RL + P E L+R FG Sbjct: 240 LLTHYSPNVPSRLLTPSSFTTNLPMDPEGALVEFSSNSSVAAPTEVLLRHTVIIDFGGKL 299 Query: 257 IKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSI---AFSSIP----NHGLG 308 + +LS +++EA F +F+ ++ + GA + S P + L Sbjct: 300 QCLKPGCLAYRDLSVNAQVREACFAVFDALRWTETIPGAEVVLFPLVSGWPHASVDTDLL 359 Query: 309 IAINNRLERAAAPRNQSQRI 328 A+ +RL RAA+ + R+ Sbjct: 360 AAVEDRLFRAASGKVARIRM 379 >gi|328870458|gb|EGG18832.1| hypothetical protein DFA_02571 [Dictyostelium fasciculatum] Length = 560 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 100/390 (25%), Positives = 162/390 (41%), Gaps = 73/390 (18%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +I ++TD N +R A + + G +A PTETVYGL ++ + A+ ++E K RP +P+I Sbjct: 108 KIDTLTDDN-MRDAADKIRRGGLVAFPTETVYGLGANALDEKAVLSIFEAKGRPLTDPVI 166 Query: 62 CHVSDISMVKKHASVDPLSLH----LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 HV K + L FWPGPLT+V ++ I P+ TA Sbjct: 167 VHVICKDEAAKLLELTDAQKRLFTTLTDAFWPGPLTIV--GRASALIPPIVTAQTGYVGV 224 Query: 118 RVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG---ISK 173 R P ++LI+ P+A PSANR G +S T H+ + I++ G Sbjct: 225 RYPKHPVAQRLIKESQCPIAAPSANRFGHVSPTLPIHVF-DDLGHSPITILEPGQDAPCA 283 Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIETLKRAI--------SVELEYCVDETSTPQSPGM 225 G+EST++ + + + ILR GG+ + +K+ +V + T ++PG Sbjct: 284 FGIESTVLKIVDDHTLCILRKGGVCEKDIKQLFQHQTISITAVNKQVSNKTTEGQEAPGQ 343 Query: 226 LKSHYAPRSQVRL----------------------RAIHVNPREALIRFGN--------- 254 L +HYAP Q + I FG+ Sbjct: 344 LLTHYAPDIQAYILLDIIINTENGNGTTNNNNQEENNSFNLSECVFIDFGDYLNKSRSSS 403 Query: 255 ---------------VPIKNIENAIISL-NLSKTGKLKEAAFNLFNYMKIAD-DSGASSI 297 NIEN ++ +LSKTG + EAA LF+ ++ ++ A I Sbjct: 404 QSHSSSSSSQSNNSNNNNNNIENEFLAFKDLSKTGNVLEAANVLFSTLRWSESQQQAKII 463 Query: 298 AFSSIPNHGL-----GIAINNRLERAAAPR 322 + + A+ +R+ RAA+ + Sbjct: 464 LLPDLRRDDVKSLDYSDAVFDRIFRAASGK 493 >gi|313903648|ref|ZP_07837038.1| Sua5/YciO/YrdC/YwlC family protein [Thermaerobacter subterraneus DSM 13965] gi|313466201|gb|EFR61725.1| Sua5/YciO/YrdC/YwlC family protein [Thermaerobacter subterraneus DSM 13965] Length = 493 Score = 237 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 88/236 (37%), Positives = 123/236 (52%), Gaps = 9/236 (3%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D A+R+A L G +A PTETVYGL D+ NP A+ R++ K RPA NPLI HV+ Sbjct: 76 DEAAVRRAGAILRQGGLVAFPTETVYGLGADALNPRAVARIFAAKGRPADNPLIVHVTGP 135 Query: 68 SMVKK--HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 AS LA+ FWPGPLTLVL + + + A L T R P Sbjct: 136 EQAGPELVASWPEAGRRLAERFWPGPLTLVLP--AGPAVPAVVRAGLPTVAVRCPAHPVA 193 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + LI G P+A PSANRSG+ S T + + + + + +++D G +G+EST+V+V Sbjct: 194 QALIAAAGTPVAAPSANRSGRPSPTRAEDVW-ADLGPHLDMLLDAGPVPVGVESTVVDVT 252 Query: 185 CEKKVRILRPGGLEIETLKRAIS--VELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238 R+LRPGG+ E L+ + + V +PGM HYAP + + L Sbjct: 253 VW-PPRLLRPGGVPAEDLEAVLGVALAAPPVVAAGEAAPAPGMKYRHYAPEAPLAL 307 Score = 81.3 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 35/69 (50%) Query: 253 GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAIN 312 G + + L+L + + A LF ++ AD GA+ + ++P HGLG A+ Sbjct: 410 GRERAGDFARGPVVLDLGSRHRPDQQARRLFRALRAADALGATRVLALAVPEHGLGRAVM 469 Query: 313 NRLERAAAP 321 NRL +AAA Sbjct: 470 NRLRKAAAG 478 >gi|71416654|ref|XP_810332.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70874846|gb|EAN88481.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 384 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 108/374 (28%), Positives = 165/374 (44%), Gaps = 59/374 (15%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 I ++ L KA L G +AIPTETVYGL ++ N A+ +++ +K RP +PLICHV Sbjct: 3 RIISASELEKAAGALARGNLVAIPTETVYGLGGNALNKEAVEKIFTVKGRPLTDPLICHV 62 Query: 65 SDISMVKKHASV--DPLSLHLAK----LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 SD+ V DP ++ LA+ WPGPLT+VL + + T R Sbjct: 63 SDVEKAMDLWDVHADPEAVELARVLGTAIWPGPLTIVL--RANPLLPNSVTGGSGFVGAR 120 Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP--LIIDGGISKIG 175 +P T +L++ P+A PSAN G +S T H+L + + LI+DGG IG Sbjct: 121 IPRHEITLRLLQLVNFPVAAPSANTFGHVSPTTADHVLKD-LGPKDSSLLIVDGGPCDIG 179 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEY----------CVDETSTPQSPGM 225 +EST+V V + V ILR GG+ + ++RA+ + + PG Sbjct: 180 IESTVVKVNNVESVEILRRGGVTLTEVQRALGDKFHPLITIRDTRLRHLSPEMAMDGPGQ 239 Query: 226 LKSHYAPRSQVRL-----------------------RAIHVNPREALIR------FGNVP 256 L HY+P RL + P E L+R FG Sbjct: 240 LLMHYSPSVPSRLLTPSSFTTNLPMDPEGALVEFSSNSSVAAPTEVLLRHTVIIDFGGKL 299 Query: 257 IKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSIAFSSIPN-------HGLG 308 + +LS +++EA F +F+ ++ + GA + F + L Sbjct: 300 HCLKSGCLAYRDLSVNAQVREACFAVFDALRWTETIPGAEVVLFPLVSEWPHASVDTDLL 359 Query: 309 IAINNRLERAAAPR 322 A+ +RL RAA+ + Sbjct: 360 AAVEDRLFRAASGK 373 >gi|319764783|ref|YP_004128720.1| sua5/ycio/yrdc/ywlc family protein [Alicycliphilus denitrificans BC] gi|317119344|gb|ADV01833.1| Sua5/YciO/YrdC/YwlC family protein [Alicycliphilus denitrificans BC] Length = 332 Score = 236 bits (602), Expect = 5e-60, Method: Composition-based stats. Identities = 101/345 (29%), Positives = 159/345 (46%), Gaps = 43/345 (12%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 I+ T ++++ A L G + +PTETVYGLA D+ N A+ R++ K RPA +PLI Sbjct: 2 ILDGTLPSSVQAAARLLARGELLGLPTETVYGLAADADNDAAVARIFAAKGRPANHPLIV 61 Query: 63 HVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 HV+D + + +A PL + L FWPGPLTL+L L ST + R P Sbjct: 62 HVADSTAITHYAKEVPLFAQQLIDAFWPGPLTLILPRLPAA--ARASTGGQDSVGLRCPA 119 Query: 122 GFTK----KLIETYGHP---LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174 + P +A PSAN G++S T +H+ + + E+ L++DGG + Sbjct: 120 HPVAHAVLAACQRLDPPVWGVAAPSANHFGKVSPTTAQHV-ADAFGDEL-LVLDGGACAV 177 Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAISV-ELEYCVDETSTPQSPGMLKSHYAPR 233 G+ESTI++ V +LRPG + ++RA + L T TP++ G L +HYAP Sbjct: 178 GIESTIIDCTRGVPV-LLRPGAISRADVQRACGLRPLSKEELPTHTPRASGTLLAHYAPT 236 Query: 234 SQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKI----- 288 ++VRL + + L + L+ A+ + ++ Sbjct: 237 ARVRLMDARQL---------QAGLDVLGADAAHLAVYARAPLRSASSRI--ILRRMPDDA 285 Query: 289 -------------ADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 DD+GA I + P+ + +RL+RAAA Sbjct: 286 AAAAQQLFAALRGFDDAGARLIWIETPPDTPDWEGVRDRLQRAAA 330 >gi|162455228|ref|YP_001617595.1| putative translation factor [Sorangium cellulosum 'So ce 56'] gi|161165810|emb|CAN97115.1| conserved putative translation factor [Sorangium cellulosum 'So ce 56'] Length = 329 Score = 235 bits (601), Expect = 6e-60, Method: Composition-based stats. Identities = 104/314 (33%), Positives = 152/314 (48%), Gaps = 14/314 (4%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 E L G +A PTETVYGL + + A R ++E K RP NPLI HV D++ + A Sbjct: 18 EILRRGGLVAFPTETVYGLGARADDARAARGIFEAKGRPPGNPLIVHVPDVASARALADG 77 Query: 77 DPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134 P + LA+ WPGPLTL++ + + A T RVP + L++ G P Sbjct: 78 WPADAERLAQAMWPGPLTLIVARRPDR-VAGVVAAGGPTVAIRVPVHPIARALLDAVGLP 136 Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194 +A PSANRS +IS T +H+ S+ I I+DGG + +G+ESTIV+V R+LRP Sbjct: 137 IAAPSANRSTEISPTTAEHV-EKSLGGRIDAILDGGPTAVGIESTIVDVT-RSPARVLRP 194 Query: 195 GGLEIETLKRAISVELEYCVDETSTPQS--PGMLKSHYAPRSQVRLRAIH------VNPR 246 G + E + + V+ + ++ PG HYAPR+QV L H Sbjct: 195 GHVTAEAIAALVPVQAAAGLVTAPAERAPSPGTHARHYAPRAQVALVPAHAVRGELDRAA 254 Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306 +A R G V + L G A L+ + +D+G I +++P Sbjct: 255 QAGSRAGAVEYGSRTATGPHAEL-LPGDPAGYAAALYAALHRLEDAGCDVIVIAAVPEDP 313 Query: 307 LGIAINNRLERAAA 320 A+ +RL RA+A Sbjct: 314 AWDAVRDRLTRASA 327 >gi|321248724|ref|XP_003191218.1| protein required for respiratory growth [Cryptococcus gattii WM276] gi|317457685|gb|ADV19431.1| Protein required for respiratory growth, putative [Cryptococcus gattii WM276] Length = 488 Score = 235 bits (601), Expect = 7e-60, Method: Composition-based stats. Identities = 108/396 (27%), Positives = 157/396 (39%), Gaps = 99/396 (25%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +A + L + +A+PTETVYGLA S +P A + +Y+IK RP+ NPLI HVS ++M++ Sbjct: 64 LEEASKHLHSHKTVAVPTETVYGLAASSLDPEACKMIYKIKNRPSDNPLIIHVSSLNMLR 123 Query: 72 KH----ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + + PL L L FWPG L P +T R+P T Sbjct: 124 RLLPPAYNFSPLYLALINAFWPG-----PLSLLFPSPSPPPPPAPQTNAIRMPSHPLTLA 178 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSIC-KEIPLIIDGGISKIGLESTIVNVQ- 184 LI PL+ PSAN SG+ S T +H+L+ + IIDGG ++G+EST+VN Sbjct: 179 LIAHSNLPLSAPSANSSGRPSPTKAQHVLNDLNGADGLGCIIDGGDCEVGVESTVVNGLE 238 Query: 185 ----CEKKVRILRPGGLEIETLKRAISVELEYCVDETST--------------------- 219 KV ILRPGGL +E +K+ + E++ +T Sbjct: 239 WKEGGGGKVDILRPGGLGVEQIKKIVD-EVDGGEGKTEIFLLGKPWKRASFKHSSSTDSV 297 Query: 220 ----------------PQSPGMLKSHYAPRSQVRLRA----------------------- 240 P +PGM HY+PR V L Sbjct: 298 KQNDVNFSTTPKVNLPPSTPGMKYRHYSPRVPVFLLKPSNVFPRPPALTSQSPSSTSAVL 357 Query: 241 ----------IHVNPREALIRFGNVPIKN----IENAIISLNLSKTGKLKEAAFNLFNYM 286 R ++ F P+ + + +S AA LF M Sbjct: 358 REIVSNISSGSKSKKRIGVLHFEGSPLSKQLLLHTDEAELIPVSLGNSAASAAHRLFAGM 417 Query: 287 KIADD--------SGASSIAFSSIPNHGLGIAINNR 314 + SG +I ++GLG+A+ R Sbjct: 418 LSLESIPSTEGQPSGVDAIVIEGCSDNGLGLAVMER 453 >gi|46445827|ref|YP_007192.1| hypothetical protein pc0193 [Candidatus Protochlamydia amoebophila UWE25] gi|46399468|emb|CAF22917.1| conserved hypothetical protein [Candidatus Protochlamydia amoebophila UWE25] Length = 311 Score = 235 bits (600), Expect = 7e-60, Method: Composition-based stats. Identities = 103/312 (33%), Positives = 154/312 (49%), Gaps = 13/312 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E L A +A+PTETVYGLA P AI++++EIK R +NPLI HV++ V Sbjct: 5 VEEAIEKLLANQLVAMPTETVYGLAARLTCPGAIKKIFEIKGRSLVNPLIIHVANPIDVC 64 Query: 72 KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 +A ++ P L FWPGPLTL++ + + + A L TA FR+P T +I Sbjct: 65 AYAIALPPHFDALTHAFWPGPLTLIVPIQ-LDLVDSIVRAGLPTAAFRMPSHPLTLHVIR 123 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL +PSAN SG+ S T+VKH+ + P ++DGG + G+ESTI++ + + Sbjct: 124 AVG-PLVMPSANLSGKPSSTDVKHV-EMDFGLDFP-VLDGGPCQEGVESTILHYRNSQ-W 179 Query: 190 RILRPGGLEIETLKRAISVELEY-CVDETSTPQSPGMLKSHYAPRSQVRL-RAIHVNPRE 247 I R G L + + E Y + + SPG + HYAP++ + L + + Sbjct: 180 EIARLGALSATVFQPILGYEPIYQKIVKNDQIISPGQMFRHYAPQATLFLGDQKQITEAD 239 Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF-SSIPNHG 306 ++ F K+ L L E A NL+ ++ D A P+ G Sbjct: 240 FIVGFTE---KSYPVEKRVLYLGSLSNPHEVAENLYAVLRQLDFEKAKIAWVDMDFPSEG 296 Query: 307 LGIAINNRLERA 318 L I RL RA Sbjct: 297 LWKTIAERLSRA 308 >gi|330826999|ref|YP_004390302.1| Sua5/YciO/YrdC/YwlC family protein [Alicycliphilus denitrificans K601] gi|329312371|gb|AEB86786.1| Sua5/YciO/YrdC/YwlC family protein [Alicycliphilus denitrificans K601] Length = 332 Score = 234 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 100/345 (28%), Positives = 158/345 (45%), Gaps = 43/345 (12%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 I+ T ++++ A L G + +PTETVYGLA D+ N A+ R++ K RPA +PLI Sbjct: 2 ILDGTLPSSVQAAARLLARGELLGLPTETVYGLAADADNDAAVARIFAAKGRPANHPLIV 61 Query: 63 HVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 HV+D + + +A PL + L FWPGPLTL+L L ST + R P Sbjct: 62 HVADSTAITHYAKEVPLFAQQLIDAFWPGPLTLILPRLPAA--ARASTGGQDSVGLRCPA 119 Query: 122 GFTK----KLIETYGHP---LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174 + P +A PSAN G++S T +H+ + + E+ L++DGG + Sbjct: 120 HPVAHAVLAACQRLDPPVWGVAAPSANHFGKVSPTTAQHV-ADAFGDEL-LVLDGGACAV 177 Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAISV-ELEYCVDETSTPQSPGMLKSHYAPR 233 G+ESTI++ V +LRPG + ++RA + L TP++ G L +HYAP Sbjct: 178 GIESTIIDCTRGVPV-LLRPGAISRADVQRACGLRPLSKEELPAHTPRASGTLLAHYAPT 236 Query: 234 SQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKI----- 288 ++VRL + + L + L+ A+ + ++ Sbjct: 237 ARVRLMDARQL---------QAGLDVLGADAAHLAVYARAPLRSASSRI--ILRRMPDDA 285 Query: 289 -------------ADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 DD+GA I + P+ + +RL+RAAA Sbjct: 286 AAAAQQLFAALRGFDDAGARLIWIETPPDTPDWEGVRDRLQRAAA 330 >gi|325192804|emb|CCA27207.1| conserved hypothetical protein [Albugo laibachii Nc14] Length = 370 Score = 234 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 92/367 (25%), Positives = 164/367 (44%), Gaps = 42/367 (11%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M +++ D+ ALR A L +G +A PTETVYGL ++ + A+ +++ K RP +PL Sbjct: 1 MAVLARFDAVALRDAAIQLKSGHLVAFPTETVYGLGANALDAEAVSLIFQAKGRPLTDPL 60 Query: 61 ICHVSDISMVKKHASVDPLSLH----LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 I HV+ + L++ FWPGPLT++ ++ I PL TAN Sbjct: 61 IVHVAKAEDALPLIQLTAKGHKLFSILSEKFWPGPLTIIAP--ASDRIPPLVTANTGFVG 118 Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG---GIS 172 R P +L++ P+A PSANR G +S T +H+++ ++D S Sbjct: 119 VRCPAHPVALELLQAAKIPIAAPSANRFGHVSPTCAQHVMNDLGHCANLTVLDDSNEETS 178 Query: 173 KIGLESTIVNVQ-CEKKVRILRPGGLEIETLKRAI-----------SVELEYCVDETSTP 220 ++G+EST++ + +V I R GG + L + +V ++ S+ Sbjct: 179 RVGIESTVIRIVPSMDQVWIYRRGGTSEDALSSVLQENQKQLEATYTVIVKANTTSESSA 238 Query: 221 Q---SPGMLKSHYAPRSQVRLRAIHVN--------------PREALIRFGNVPIKNIENA 263 + +PG L HYAP + L I + ++ + Sbjct: 239 KNQEAPGQLLKHYAPDVETHLIQICSDSNQNCALLTAEFDLAECVILDVNRQLAPFEAKS 298 Query: 264 IISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSIAFSSIPN--HGLGIAINNRLERAAA 320 + +LSK G + +A+ +F ++ ++ A + + I + H A+ +R+ RAA+ Sbjct: 299 LAYRDLSKDGDITKASQLIFEALRWSESVPKAKKVLMADIEHISHQHTAALRDRMFRAAS 358 Query: 321 PRNQSQR 327 + Q + Sbjct: 359 GKVQKLK 365 >gi|240275733|gb|EER39246.1| translation initiation protein Sua5 [Ajellomyces capsulatus H143] Length = 473 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 80/263 (30%), Positives = 130/263 (49%), Gaps = 21/263 (7%) Query: 8 DSNALRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 ++ L +A E L + +P+A PTETVYGL D+ A++ +Y+ K+RP+ NPLI H Sbjct: 57 EAKVLLEAAEALRTSDIPVAFPTETVYGLGADATRSAAVQGIYKAKQRPSDNPLIVHQPK 116 Query: 67 ISMVKKHAS----------VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 ++ + P+ L FWPGP+T +L + + + P T+ L+T Sbjct: 117 SRGLRLRTEGSQQGGKRNFIPPIYEPLISKFWPGPVT-ILPNQTPSPLAPEVTSTLRTFG 175 Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R+P + LI PLA PSAN S + S T +H+ + + I +I+DGG +G Sbjct: 176 VRMPSSPVARLLIYLADRPLAAPSANASTKPSPTTAQHVY-ADLQGRINMILDGGPCGVG 234 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL------EYCVDETSTPQSPGMLKSH 229 +EST+V+ +LRPGG+ IE ++ E + + P +PGM H Sbjct: 235 VESTVVDGLL-YPPAVLRPGGIGIEEIRACPGWEDVQIGYKDGALQGKEVPLAPGMKYKH 293 Query: 230 YAPRSQVRLRAIHVNPREALIRF 252 Y+P+++V L + + Sbjct: 294 YSPKAKVVLFEAGQDVETVKSKL 316 Score = 68.2 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 4/58 (6%) Query: 264 IISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG--LGIAINNRLERAA 319 + +++ A LF+ ++ D+ S I I + L AI NRL +AA Sbjct: 412 LFDIDIGPDTD--SIARGLFSALRGLDEKNVSIIYVEGISDTEGDLAAAIMNRLRKAA 467 >gi|323304969|gb|EGA58723.1| Sua5p [Saccharomyces cerevisiae FostersB] Length = 337 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 87/279 (31%), Positives = 136/279 (48%), Gaps = 29/279 (10%) Query: 5 SITDSN---ALRKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 +ITD AL +A + +A PTETVYGL + N ++ +Y+ K RP+ NPL Sbjct: 33 TITDPETETALVEAARIIRDTDETVAFPTETVYGLGGSALNDNSVLSIYKAKNRPSDNPL 92 Query: 61 ICHVSDISMVKK-------------HASVDPLSLHLAKLFWPGPLTLVLDLLST--TDIH 105 I HVS I + + ++ + L WPGPLT++L + S+ + + Sbjct: 93 ITHVSSIDQLNRKVFNQPHLSGTSLFDNIPSIYRPLISSLWPGPLTILLPVPSSEHSALS 152 Query: 106 PLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP 164 L+TA+ T R+P + LI P+A PSAN S + S T H+ + +IP Sbjct: 153 KLTTADQPTFAVRIPANPVARALIALSDTPIAAPSANASTRPSPTLASHVY-HDLKDKIP 211 Query: 165 LIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKR-------AISVELEYCVDET 217 +I+DGG K+G+EST+V+ C + +LRPGG E + + VE + V++ Sbjct: 212 IILDGGACKVGVESTVVDGLCNPPM-LLRPGGFTYEEIVKLGGEAWSLCKVENKKTVEKG 270 Query: 218 STPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVP 256 ++PGM HY+P ++V L H L + Sbjct: 271 EKVRTPGMKYRHYSPSAKVVLLVPHCEGDGILKGXDRME 309 >gi|58263054|ref|XP_568937.1| cell growth and/or maintenance-related protein [Cryptococcus neoformans var. neoformans JEC21] gi|57223587|gb|AAW41630.1| cell growth and/or maintenance-related protein, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 488 Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats. Identities = 108/398 (27%), Positives = 155/398 (38%), Gaps = 103/398 (25%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +A + L + +A+PTETVYGLA S +P A + +Y+IK RP+ NPLI HVS + M++ Sbjct: 64 LEEASKHLHSHKTVAVPTETVYGLAASSLDPEACKMIYKIKNRPSDNPLIIHVSSLDMLR 123 Query: 72 KH----ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + S L L L FWPG L P + +T R+P Sbjct: 124 RLLPPDYSFSSLYLALINAFWPG-----PLSLLFPSPSPPPSPAPQTNAIRMPSHPLALA 178 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSIC-KEIPLIIDGGISKIGLESTIVNVQ- 184 LI PL+ PSAN SG+ S T +H+ + + IIDGG +G+EST+VN Sbjct: 179 LIAHSNLPLSAPSANSSGRPSPTKAQHVWNDLNGSDGLGCIIDGGDCGVGVESTVVNGLE 238 Query: 185 ----CEKKVRILRPGGLEIETLKRAISVELEYCVDETS---------------------- 218 KV ILRPGGL +E +K+ + E++ +T Sbjct: 239 WKEGGGGKVDILRPGGLGVEQIKKIVD-EVDGGEGKTEILLLGKPWKGASFKHSSSTDPV 297 Query: 219 ---------------TPQSPGMLKSHYAPRSQVRLRA----------------------- 240 P +PGM HY+PR V L Sbjct: 298 QQNDVNLLTTPKVNFAPSTPGMKYRHYSPRVPVFLLKPSNIFPRPPALMSPSSSSASAVL 357 Query: 241 ----------IHVNPREALIRF------GNVPIKNIENAIISLNLSKTGKLKEAAFNLFN 284 R ++ F + I E +I ++L + AA LF Sbjct: 358 RQILSNISSDSKFKRRIGVLHFEGSPLSKQLLIDTDEAELIPVSLG--DSVASAAQRLFA 415 Query: 285 YMKIADD--------SGASSIAFSSIPNHGLGIAINNR 314 M + SG +I + GLG+A+ R Sbjct: 416 GMLTLESVPSTDGQPSGVDAIVIEGCSDDGLGLAVMER 453 >gi|134107902|ref|XP_777333.1| hypothetical protein CNBB1350 [Cryptococcus neoformans var. neoformans B-3501A] gi|50260023|gb|EAL22686.1| hypothetical protein CNBB1350 [Cryptococcus neoformans var. neoformans B-3501A] Length = 488 Score = 232 bits (593), Expect = 6e-59, Method: Composition-based stats. Identities = 108/398 (27%), Positives = 155/398 (38%), Gaps = 103/398 (25%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +A + L + +A+PTETVYGLA S +P A + +Y+IK RP+ NPLI HVS + M++ Sbjct: 64 LEEASKHLHSHKTVAVPTETVYGLAASSLDPEACKMIYKIKNRPSDNPLIIHVSSLDMLR 123 Query: 72 KH----ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + S L L L FWPG L P + +T R+P Sbjct: 124 RLLPPDYSFSSLYLALINAFWPG-----PLSLLFPSPSPPPSPAPQTNAIRMPSHPLALA 178 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSIC-KEIPLIIDGGISKIGLESTIVNVQ- 184 LI PL+ PSAN SG+ S T +H+ + + IIDGG +G+EST+VN Sbjct: 179 LIAHSNLPLSAPSANSSGRPSPTKAQHVWNDLNGSDGLGCIIDGGDCGVGVESTVVNGLE 238 Query: 185 ----CEKKVRILRPGGLEIETLKRAISVELEYCVDETS---------------------- 218 KV ILRPGGL +E +K+ + E++ +T Sbjct: 239 WKEGGGGKVDILRPGGLGVEQIKKIVD-EVDGGEGKTEILLLGKPWKGASFKHSSSTDPV 297 Query: 219 ---------------TPQSPGMLKSHYAPRSQVRLRA----------------------- 240 P +PGM HY+PR V L Sbjct: 298 QQNDVNLLTTPKVNFAPSTPGMKYRHYSPRVPVFLLKPSNIFPRPPALMSPSSSSASAVL 357 Query: 241 ----------IHVNPREALIRF------GNVPIKNIENAIISLNLSKTGKLKEAAFNLFN 284 R ++ F + I E +I ++L + AA LF Sbjct: 358 RQILSNISSDSKFKRRIGVLHFEGSPLSKQLLIDTDEAELIPVSLG--DSVASAAQRLFA 415 Query: 285 YMKIADD--------SGASSIAFSSIPNHGLGIAINNR 314 M + SG +I + GLG+A+ R Sbjct: 416 GMLTLESVPSTDGQPSGVDAIVIEGCSDDGLGLAVMER 453 >gi|118389926|ref|XP_001028008.1| Sua5/YciO/YrdC/YwlC family protein [Tetrahymena thermophila] gi|89309778|gb|EAS07766.1| Sua5/YciO/YrdC/YwlC family protein [Tetrahymena thermophila SB210] Length = 434 Score = 232 bits (592), Expect = 6e-59, Method: Composition-based stats. Identities = 87/348 (25%), Positives = 150/348 (43%), Gaps = 52/348 (14%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 QI+ + +++A E L G ++ PTETVYGL ++ + A++ ++ K RP +P+I Sbjct: 31 QILDDKNEEDMKQAGELLRNGKLVSFPTETVYGLGANALDEEAVKSIFLAKNRPLTDPVI 90 Query: 62 CHVSDISMVKKHASVDP----LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 H+ + P + LA FWPGPLT++L I + TA Sbjct: 91 VHIDKKEDGLNFVEITPGIKEVYDFLADNFWPGPLTMILKANFNI-IPRVVTAQTDFVGI 149 Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG----GIS 172 R P ++LI P+A PSAN +S T+ H+ + + I +I D Sbjct: 150 RCPQHEVARRLIRIAQRPIAAPSANLFAHVSPTSAVHVFNDFYDQNISIINDPVQELPSC 209 Query: 173 KIGLESTIVNVQ----------CEKKVRILRPGGLEIETLKRAIS-------------VE 209 + G+EST+V ++ + + ILR G L E + +AIS + Sbjct: 210 EFGIESTVVKIEEIASSNQQENSKFNLVILRFGSLSGEQIAQAISKSDQFKDRITIVKKK 269 Query: 210 LEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAII---- 265 E V E ++PG L HY+P L + + + +++ + NI+ +II Sbjct: 270 KENKVAEHIHSEAPGQLLKHYSPYINCYLFHLRSSDDKQDLKYPLLNDINIKESIIFDYK 329 Query: 266 ------------SLNLSKTGKLKEAAFNLFNYMKIA---DDSGASSIA 298 ++LS+ G ++E L++ ++ A D + I Sbjct: 330 NQTEHLKDKCMKYISLSEKGDMREIMTKLYDSLRWAENVDAAKNILIY 377 >gi|260891996|ref|YP_003238093.1| Sua5/YciO/YrdC/YwlC family protein [Ammonifex degensii KC4] gi|260864137|gb|ACX51243.1| Sua5/YciO/YrdC/YwlC family protein [Ammonifex degensii KC4] Length = 338 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 94/327 (28%), Positives = 154/327 (47%), Gaps = 16/327 (4%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 AL +A E L G +A PTETVYGL + A+RR++ +K RPA PL H++D V Sbjct: 17 ALEEAGELLRRGELVAFPTETVYGLGAAATQDEALRRVFAVKGRPARKPLTLHLADPEEV 76 Query: 71 KKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 ++ P + L FWPGPLTL+L + + + P TA +T RVP ++LI Sbjct: 77 FRYVKEVPSTARRLISSFWPGPLTLILP--AASGLPPSLTAGGETVGIRVPDHAVAQELI 134 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 G PLA PSAN SG+ + T H+L+ + +I ++DGG + +G+EST+V V+ E+ Sbjct: 135 RMAGLPLAAPSANLSGRPAPTKAAHVLAE-LGGKIAGVLDGGPTPLGIESTVVEVRGEE- 192 Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTP---QSPGMLKSHYAPRSQV-RLRAIHVN 244 + + R G L E ++ ++ E ++P +L P V R+ A Sbjct: 193 LVVRRVGALLPEEIEERTGIKPLVAPAEGEGRWWLKAPLVLVEGEVPEQVVARVLAEASR 252 Query: 245 PREALIRFGNVPIKN---IENAIISLNLSKTGK-LKEAAFNLFNYMKIADDSGASSIAFS 300 R G + + + +L + + A + ++ ++ I Sbjct: 253 QDRVGRRVGVLTREERVGLYQPFTALACGRVEDGPRSVAAAFYAALRDIEER-VEIIVAE 311 Query: 301 SIPNHGLGIAINNRLERAAAPRNQSQR 327 ++ +G + RL AA R ++ R Sbjct: 312 AVVAE-VGKVVLLRLREMAAERYEAGR 337 >gi|310790728|gb|EFQ26261.1| yrdC domain-containing protein [Glomerella graminicola M1.001] Length = 448 Score = 228 bits (582), Expect = 9e-58, Method: Composition-based stats. Identities = 86/259 (33%), Positives = 131/259 (50%), Gaps = 26/259 (10%) Query: 12 LRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 LR A E++ P+A PTETVYGL D+ A++ ++ K RP+ NPLI HV D+ M+ Sbjct: 42 LRDAAEYMRTQDTPVAFPTETVYGLGADATRSGAVKGIFSAKGRPSDNPLISHVCDLDML 101 Query: 71 KKHAS----------------VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT 114 + + + L + FWPGPLT++L + + P TA L++ Sbjct: 102 RGLLRPERQTMHGDVAAETDPIPEIYKPLIEKFWPGPLTILLRNPEPSKLAPEVTAGLES 161 Query: 115 ACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173 R+P LI+ PLA PSAN S + S T +H+ + I LI+DGG + Sbjct: 162 FGVRMPSSPLALTLIKLAAAPLAAPSANASTKPSPTTAQHVY-HDLEGRIGLILDGGACQ 220 Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVE------LEYCVDETSTPQSPGMLK 227 +G+EST+V+ C+ V +LRPGG+ +E L+ E + S P++PGM Sbjct: 221 VGVESTVVDGLCDPPV-VLRPGGVSMEELRSCAGWEGVVKAYKDASETGRSAPRAPGMKY 279 Query: 228 SHYAPRSQVRLRAIHVNPR 246 HY+P+++V L Sbjct: 280 KHYSPKAKVVLYEWSCKAG 298 Score = 70.9 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Query: 250 IRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG-LG 308 ++ G + + L++ G + A LF+ ++ D GAS I I + + Sbjct: 373 VKEGELQDAEKKPMARVLDIDLGGDTRGIAQGLFSALRDLDRRGASVIFVDGIDDRNDIA 432 Query: 309 IAINNRLERAAA 320 A+ NRL +AA+ Sbjct: 433 EAVMNRLRKAAS 444 >gi|322505247|emb|CBZ14756.1| conserved hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 382 Score = 228 bits (582), Expect = 9e-58, Method: Composition-based stats. Identities = 105/371 (28%), Positives = 167/371 (45%), Gaps = 53/371 (14%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M + T LR+A + L G +AIPTETVYGL ++ +A +R+Y +K RP +PL Sbjct: 1 MAQIIGTSLEDLRRAADALLQGKLVAIPTETVYGLGGNALIESAAKRIYTVKGRPPTDPL 60 Query: 61 ICHVSDISMVKKHASV------DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT 114 ICHV ++ V++ + L+ + WPGPLT+V + + T Sbjct: 61 ICHVCNLDGVRRLWDLKWDEGAVELACAIGAALWPGPLTIVFKANPS--LPDCVTGGSGY 118 Query: 115 ACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP--LIIDGGI 171 R+P T KL+E P+A PSAN G +S T +H+ + P LIIDGG Sbjct: 119 VGARIPNNAITLKLLEMVDVPVAAPSANTFGHVSPTTSQHVY-DDLAARDPELLIIDGGQ 177 Query: 172 SKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDE-----------TSTP 220 S +G+EST+ V+ + V +LR G + + + RAI+ E T+ Sbjct: 178 SSVGIESTVAKVESKDLVVVLRRGCITVSMIHRAIAERYPQTRVEVRDMRIMCGSMTAPM 237 Query: 221 QSPGMLKSHYAPRSQVRL----------------------RAIHVNPREALIRFGNVPIK 258 +SPG L +HY+PR L + + ++ F + Sbjct: 238 ESPGQLLTHYSPRVPSSLLTPGSLAMLTASAGVPVYVHRGKDVVPLSETIVLDFNGYLSR 297 Query: 259 NIENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSIAFSSI-------PNHGLGIA 310 ++ + ++S G +E F +F+ ++ + GA S+ F I N L A Sbjct: 298 FRDSCLSYHDMSPDGNPEEGCFAVFDALRATETVKGAKSLVFPFISEWPHDKENEDLLAA 357 Query: 311 INNRLERAAAP 321 + +RL RAA+ Sbjct: 358 MEDRLFRAASG 368 >gi|320591982|gb|EFX04421.1| translation initiation protein sua5 [Grosmannia clavigera kw1407] Length = 452 Score = 227 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 84/258 (32%), Positives = 129/258 (50%), Gaps = 29/258 (11%) Query: 10 NALRKACEFLDAGLP-IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++ A +L + PTETVYGLA D +A+R ++ +K RP+ NPLI HV D+ Sbjct: 42 ESVATAARYLRETDVPVGFPTETVYGLAADVTRSSAVRGIFSVKGRPSDNPLIVHVCDLD 101 Query: 69 MVKKHA---------SVDPLSLHLAKLFWPGPLTLVLDLLSTTD----IHPLSTANLKTA 115 MV+ + + L + FWPGPLT++LD+ + + P TA L+T Sbjct: 102 MVRGLLGTGEDGQPRELPAIYRPLVERFWPGPLTILLDVPDSGSGRWTLAPEVTAGLRTF 161 Query: 116 CFRVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174 R+P + LI PLA PSAN S + S T +H++ + I ++DGG + Sbjct: 162 GCRLPDSPLARTLIRLAQAPLAAPSANASTRPSPTTAQHVV-DDLDGRIVAVLDGGPCAV 220 Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL------------EYCVDETSTPQS 222 G+EST+V+ CE V +LRPGG+ + L+ E + P++ Sbjct: 221 GVESTVVDGLCEPPV-VLRPGGISMAQLRSVPGWEKVQRAYRDQSAGQPVDGTTATAPRA 279 Query: 223 PGMLKSHYAPRSQVRLRA 240 PGM HY+P+++V L Sbjct: 280 PGMKYKHYSPKARVVLYE 297 Score = 60.1 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 31/99 (31%), Gaps = 2/99 (2%) Query: 224 GMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLF 283 G L P R + P + A L L A LF Sbjct: 351 GQLLRPIGPIGGNRGQKTEQAPGHTATYRLEAFALDGTTAATVLELDLGRDQASVAHGLF 410 Query: 284 NYMKIADDSGASSIAFSSI--PNHGLGIAINNRLERAAA 320 + ++ D GA I + + A+ NRL +AA+ Sbjct: 411 SGLRDLDARGADVILVEGLDDRADDIAAAVMNRLRKAAS 449 >gi|326319262|ref|YP_004236934.1| Sua5/YciO/YrdC/YwlC family protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323376098|gb|ADX48367.1| Sua5/YciO/YrdC/YwlC family protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 336 Score = 227 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 93/335 (27%), Positives = 153/335 (45%), Gaps = 30/335 (8%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++ A L AG + +PTETVYGLA D+ + A+ +++E K RP+ +PLI HV+ Sbjct: 8 PSSIDAAARALRAGQLLGLPTETVYGLAADAASDAAVAQIFEAKGRPSDHPLIVHVAGSE 67 Query: 69 MVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 + AS+ + L + FWPGPLTL+L L D + + R P + Sbjct: 68 GIPHFAASIPAFAEALVRAFWPGPLTLILPRLP--DRAAAAAGGQDSVGLRCPAHPVAQA 125 Query: 128 IETY---------GHP---LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 + G P +A PSANR G++S T +H+ L++DGG +G Sbjct: 126 VLKACASDDPALGGQPVHGVAAPSANRFGRVSPTTAQHVQGEFGDGL--LVLDGGPCTVG 183 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCVDETSTPQSPGMLKSHYAPRS 234 +ESTI++ V +LRPG + + A V L + TP++ G L++HYAP + Sbjct: 184 IESTIIDCTRGVPV-LLRPGAITRAEIAAACGLVPLSKEELPSHTPRASGTLEAHYAPSA 242 Query: 235 QVRLRAIHV---------NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNY 285 +VRL L + P+++ + ++ + + Sbjct: 243 KVRLMDAKALRAGLELLGADARHLAVYARAPLRSPSSGVVLRRMPEAAAAAAQELF--AA 300 Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ DD+G I + P + +RL+RAAA Sbjct: 301 LRDFDDAGVKLIWVETPPETPDWEGVRDRLQRAAA 335 >gi|299117058|emb|CBN73829.1| conserved unknown protein [Ectocarpus siliculosus] Length = 453 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 95/405 (23%), Positives = 164/405 (40%), Gaps = 91/405 (22%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 + L +A L +G +A PTETVYGL ++ + A+ ++++ K+RP +PLI HV D Sbjct: 51 EEPWLTEAGARLRSGKLVAFPTETVYGLGANALSEDAVLKIFQAKQRPLTDPLIVHVPDT 110 Query: 68 SMVKKHASVD------PLSLHLA----KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 + + + L + WPGPLTL+ + + P TA Sbjct: 111 AGALAVVDFEVEGGGGQKARRLLDLLGEKLWPGPLTLI--AKADKKVPPCITAGTGFVGV 168 Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG---GISK 173 R P T++L+ G P+A PSANR G +S T H++ + L++DG G Sbjct: 169 RCPAHPVTRQLLSIAGVPVAAPSANRFGHVSPTQAMHVM-EDLGGSDILVLDGDTSGACG 227 Query: 174 IGLESTI--VNVQCEKKVRILRPGGLEIETLKRAI------------------------- 206 +G+EST+ ++ + ++ ILR GG+ + ++ A+ Sbjct: 228 VGIESTVAKIDAAND-RILILRMGGVTQDRIRDALKEGGEEFSGISVYAGSVAGGKTEAK 286 Query: 207 -----------SVELEYCVDETSTP-----------QSPGMLKSHYAPRSQVRLRAIHVN 244 S++ E DE P + G L HY+P +V Sbjct: 287 GEEEREREARGSLKDEPAKDEGQAPGLMRQLCAISDATTGQLLRHYSPDLEVFRVLGATP 346 Query: 245 PREALIRFGNVPIKNI--------------------ENAIISLNLSKTGKLKEAAFNLFN 284 + G + ++ +A+ +LS G EAA LF Sbjct: 347 GSTSGRMVGGGELADLASMARTSVVVDFAGQLKGLQASAVAYSDLSIEGSADEAAKGLFR 406 Query: 285 YMKIADDSG-ASSIAFSSIP---NHGLGIAINNRLERAAAPRNQS 325 ++ A+ A + + +P N + A+N+R+ R+A+ + S Sbjct: 407 ALRWAETQPSAQRLLIAGLPSKSNGDMAAAVNDRIYRSASGKTIS 451 >gi|167909744|ref|ZP_02496835.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 112] Length = 252 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 80/243 (32%), Positives = 121/243 (49%), Gaps = 14/243 (5%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + A+ A LDAG +A PTETVYGL D++NP A+ R+Y K RPA +P+I H++ S Sbjct: 11 AEAIEDAAARLDAGELVAFPTETVYGLGADAQNPAAVARIYAAKGRPANHPVIVHLAPGS 70 Query: 69 MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 P + L FWPGPLTL+L T I + + R P + Sbjct: 71 DPGYWVEALPADAKKLIDAFWPGPLTLILKR--ATHIPDAVSGGQDSVGLRCPSHPVAQA 128 Query: 127 LIETYG------HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L+ + +A PSANR G +S T +H+ + ++DGG S +G+ESTI Sbjct: 129 LLRAFDARRGGHGGVAAPSANRFGHVSPTTAQHVRDEF--GDAVHVLDGGPSDVGIESTI 186 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQVRLR 239 +++ +LRPG + + + V + + P++ G LK+HYAPR+ + L Sbjct: 187 LDLSRGFPA-LLRPGHVSPRQIADVLGVAPRLPDGSDATAPRASGTLKAHYAPRTPLALA 245 Query: 240 AIH 242 A Sbjct: 246 AFE 248 >gi|299136790|ref|ZP_07029973.1| Sua5/YciO/YrdC/YwlC family protein [Acidobacterium sp. MP5ACTX8] gi|298601305|gb|EFI57460.1| Sua5/YciO/YrdC/YwlC family protein [Acidobacterium sp. MP5ACTX8] Length = 343 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 99/349 (28%), Positives = 156/349 (44%), Gaps = 47/349 (13%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 + D + +A + L +G +A TETVYGL D+ + A+ R++E K+RP+ +PLI H Sbjct: 6 LHAEDPGDVSRAADLLRSGGTVAFATETVYGLGADALSEAAVARIFEAKQRPSWDPLIVH 65 Query: 64 VSDISMVKKHASVDPLSLH----LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 ++ + + +V+ LA+ FWPGPLTL+L + TA RV Sbjct: 66 LASATEISSITNVEGELQRRVNLLAETFWPGPLTLLLPR--KVVVPDSVTAGRPLVGVRV 123 Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P L++ G P+A PSAN G S T H+L + + I ++D G + +GLES Sbjct: 124 PSHPAALALLQAAGLPIAAPSANTFGHTSPTTAAHVL-ADLEGRIDAVLDAGPTSVGLES 182 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELE---YCVDETSTPQ----SPGMLKSHYA 231 T+++ + + + RPG + E + A V +E T+ P+ SPG+ HYA Sbjct: 183 TVLD-PAQTPMVLYRPGAVTAEQIAAATGVPVEIFRVAGMSTAQPKESLPSPGVGIRHYA 241 Query: 232 PRSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKI--- 288 PR+++ L +R V + E + L +L A + Sbjct: 242 PRARLILVEGSEEALRQTLR--EVLSQGGERVGVL--LPDGWRLDAVA------LVEPWA 291 Query: 289 ------------------ADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 DD GA+ I + GL AI +RLE+AA Sbjct: 292 AWEDQAALAAALFAGLRALDDRGATIILCPLPLSGGLKDAIRDRLEKAA 340 >gi|42521964|ref|NP_967344.1| putative translation factor related to Sua5 [Bdellovibrio bacteriovorus HD100] gi|39574494|emb|CAE77998.1| putative translation factor related to Sua5 [Bdellovibrio bacteriovorus HD100] Length = 338 Score = 226 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 104/338 (30%), Positives = 169/338 (50%), Gaps = 27/338 (7%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 ++ + AL KA L+ G I PTETVYGLA P+AI +++ K+RP +PLI HV+ Sbjct: 2 MSPNEALAKAKIILEEGGVIGFPTETVYGLAARIDIPSAIEKIFTTKERPFFDPLIVHVA 61 Query: 66 DISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 I KK A P S LA+ FWPGPLT+VL + ++ + T+ L++ R+P Sbjct: 62 SIEQAKKVTAFWGPASQALAEAFWPGPLTMVLPRDPS--VNAMITSGLESVGIRMPNHPL 119 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 +L++ G PLA PSAN+ G+ S T+ H+ E ++DGG +IG+EST++ V Sbjct: 120 ALELLQQVGVPLAAPSANKFGRTSPTSASHV-RVEFKNENVFVVDGGDCEIGIESTVLLV 178 Query: 184 QCEKK---VRILRPGGLEIETLKRAISVE-LEY-CVDETSTPQSPGMLKSHYAPRSQVRL 238 + + + ILR G + L R + + L Y +++ +SPG +K HY P + + Sbjct: 179 RHRPEGVMLSILRRGHILKSDLARVLEEKGLAYEFIEQVDKRESPGHMKHHYMPPVPLVV 238 Query: 239 RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTG---------KLKE----AAFNLFNY 285 E++++ N I + + I S+ + K KL E A + + Sbjct: 239 CLDPSRSPESVLKEVNEKIGELPDEIESIKIIKPKAGIHSYEVLKLSEDPLLATREFYGH 298 Query: 286 MKIADDSGASSIAF--SSIPNHGL-GIAINNRLERAAA 320 ++ G I F + G ++ +RL +AA+ Sbjct: 299 LRDVAARGKDCILFYREA-HQTGERWESLFDRLNKAAS 335 >gi|167917766|ref|ZP_02504857.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei BCC215] Length = 263 Score = 226 bits (577), Expect = 4e-57, Method: Composition-based stats. Identities = 84/259 (32%), Positives = 127/259 (49%), Gaps = 15/259 (5%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + A+ A LDAG +A PTETVYGL D++NP A+ R+Y K RPA +P+I H++ S Sbjct: 10 AEAIEDAAARLDAGELVAFPTETVYGLGADAQNPAAVARIYAAKGRPANHPVIVHLAPGS 69 Query: 69 MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 P + L FWPGPLTL+L T I + + R P + Sbjct: 70 DPGYWVEALPADAKKLIDAFWPGPLTLILKR--ATHIPDAVSGGQDSVGLRCPSHPVAQA 127 Query: 127 LIETYG------HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L+ + +A PSANR G +S T +H+ + ++DGG S +G+ESTI Sbjct: 128 LLRAFDARRGGHGGVAAPSANRFGHVSPTTAQHVRDEF--GDAVHVLDGGPSDVGIESTI 185 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQVRLR 239 +++ +LRPG + + + V + + P++ G LK+HYAPR+ + L Sbjct: 186 LDLSRGFPA-LLRPGHVSPRQIADVLGVAPRLPDGSDATAPRASGTLKAHYAPRTPLALA 244 Query: 240 AIH-VNPREALIRFGNVPI 257 A + P A R P+ Sbjct: 245 AFERLEPLLAAARDTGEPV 263 >gi|241563383|ref|XP_002401681.1| sua5, putative [Ixodes scapularis] gi|215501873|gb|EEC11367.1| sua5, putative [Ixodes scapularis] Length = 227 Score = 226 bits (577), Expect = 4e-57, Method: Composition-based stats. Identities = 79/214 (36%), Positives = 118/214 (55%), Gaps = 5/214 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + KA E++ +G + +PTETVYG+ D+ N A ++++ K RPA+NPLI HV+ I K Sbjct: 16 ISKAVEYIKSGKVVVLPTETVYGIGADATNNEACLKIFQFKNRPAINPLIVHVASIEQAK 75 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIET 130 + + L+ +A+ FWPGPL++V+ L +I P T L T R+P +LI Sbjct: 76 EIGEFNDLATKIAEKFWPGPLSIVVPLKVNANIAPSVTVGLNTIAIRMPSYPLALELIRQ 135 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI--SKIGLESTIVNVQCEKK 188 G P+A PSAN S IS TNV+H+ I+ I S+ GLESTI++ Sbjct: 136 SGVPIAAPSANPSNYISPTNVEHVTKHFSENAEIFILAPEIYQSEYGLESTIID-TTTVT 194 Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQS 222 ILR G + E L+ + V++ ETST ++ Sbjct: 195 PTILREGFITAEILEEVLGVKV-LKASETSTIKA 227 >gi|167822943|ref|ZP_02454414.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 9] Length = 260 Score = 226 bits (577), Expect = 4e-57, Method: Composition-based stats. Identities = 80/243 (32%), Positives = 121/243 (49%), Gaps = 14/243 (5%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + A+ A LDAG +A PTETVYGL D++NP A+ R+Y K RPA +P+I H++ S Sbjct: 11 AEAIEDAAARLDAGELVAFPTETVYGLGADAQNPAAVARIYAAKGRPANHPVIVHLAPGS 70 Query: 69 MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 P + L FWPGPLTL+L T I + + R P + Sbjct: 71 DPGYWVEALPADAKKLIDAFWPGPLTLILKR--ATHIPDAVSGGQDSVGLRCPSHPVAQA 128 Query: 127 LIETYG------HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L+ + +A PSANR G +S T +H+ + ++DGG S +G+ESTI Sbjct: 129 LLRAFDARRGGHGGVAAPSANRFGHVSPTTAQHVRDEF--GDAVHVLDGGPSDVGIESTI 186 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQVRLR 239 +++ +LRPG + + + V + + P++ G LK+HYAPR+ + L Sbjct: 187 LDLSRGFPA-LLRPGHVSPRQIADVLGVAPRLPDGSDATAPRASGTLKAHYAPRTPLALA 245 Query: 240 AIH 242 A Sbjct: 246 AFE 248 >gi|167901498|ref|ZP_02488703.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei NCTC 13177] Length = 255 Score = 226 bits (577), Expect = 4e-57, Method: Composition-based stats. Identities = 80/243 (32%), Positives = 121/243 (49%), Gaps = 14/243 (5%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + A+ A LDAG +A PTETVYGL D++NP A+ R+Y K RPA +P+I H++ S Sbjct: 10 AEAIEDAAARLDAGELVAFPTETVYGLGADAQNPAAVARIYAAKGRPANHPVIVHLAPGS 69 Query: 69 MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 P + L FWPGPLTL+L T I + + R P + Sbjct: 70 DPGYWVEALPADAKKLIDAFWPGPLTLILKR--ATHIPDAVSGGQDSVGLRCPSHPVAQA 127 Query: 127 LIETYG------HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L+ + +A PSANR G +S T +H+ + ++DGG S +G+ESTI Sbjct: 128 LLRAFDARRGGHGGVAAPSANRFGHVSPTTAQHVRDEF--GDAVHVLDGGPSDVGIESTI 185 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQVRLR 239 +++ +LRPG + + + V + + P++ G LK+HYAPR+ + L Sbjct: 186 LDLSRGFPA-LLRPGHVSPRQIADVLGVAPRLPDGSDATAPRASGTLKAHYAPRTPLALA 244 Query: 240 AIH 242 A Sbjct: 245 AFE 247 >gi|145478343|ref|XP_001425194.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124392263|emb|CAK57796.1| unnamed protein product [Paramecium tetraurelia] Length = 425 Score = 226 bits (577), Expect = 4e-57, Method: Composition-based stats. Identities = 94/364 (25%), Positives = 157/364 (43%), Gaps = 58/364 (15%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + L A + L G +A PTETVYGL +++N AI +++ KKRP +PLI HV D + Sbjct: 54 DELHIAAQLLHQGELVAFPTETVYGLGANAKNAQAILNIFKAKKRPLSDPLIVHVHDKNN 113 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + + A+LFWPGP T+VL + + +A + R+P +L+ Sbjct: 114 I--YTDKPDFLDSFAELFWPGPFTIVLKST-QLETTEILSAGTGSIGIRIPNHKVALELL 170 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E P+A PSAN IS T+ H+ + + + IID G S G+EST++ + Sbjct: 171 EKANLPVAAPSANLFTHISPTSAAHVFNDFYDQRV-HIIDAGRSDNGIESTVIKPLGNE- 228 Query: 189 VRILRPGGLEIETLKRAISVELEY-----------------------------CVDETST 219 + ILR G L ET+ + I + ++ ++ Sbjct: 229 LHILRLGSLAKETIMKKIGQSDKLKHFAIKYENKYMQIEETEEDIEKELEELNVLERKNS 288 Query: 220 PQSPGMLKSHYAPRSQVRLRAIHVN----------PREALIRFGNVPIKNIEN--AIISL 267 ++PG HY+ R + N +I FG+ I + I Sbjct: 289 MEAPGQFLKHYSARINSFIVTFQSNTIGQQIDLDLKESVIIDFGSELKNRIADLDEIKYK 348 Query: 268 NLSKTGKLKEAAFNLFNYMKIAD-DSGASSIAFSSIP---------NHGLGIAINNRLER 317 +LS+ KEA FNL++ ++ A+ GA I + + ++I +++ R Sbjct: 349 SLSENYDAKEAMFNLYDSLRWAELQQGAKQILLYDFDTQINQKVQNDENV-LSIQDKIFR 407 Query: 318 AAAP 321 +A+ Sbjct: 408 SASG 411 >gi|167814478|ref|ZP_02446158.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 91] Length = 245 Score = 226 bits (576), Expect = 5e-57, Method: Composition-based stats. Identities = 80/241 (33%), Positives = 121/241 (50%), Gaps = 14/241 (5%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + A+ A LDAG +A PTETVYGL D++NP A+ R+Y K RPA +P+I H++ S Sbjct: 10 AEAIEDAAARLDAGELVAFPTETVYGLGADAQNPAAVARIYAAKGRPANHPVIVHLAPGS 69 Query: 69 MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 P + L FWPGPLTL+L T I + + R P + Sbjct: 70 DPGYWVEALPADAKKLIDAFWPGPLTLILKR--ATHIPDAVSGGQDSVGLRCPSHPVAQA 127 Query: 127 LIETYG------HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L+ + +A PSANR G +S T +H+ + ++DGG S +G+ESTI Sbjct: 128 LLRAFDARRGGHGGVAAPSANRFGHVSPTTAQHVRDEF--GDAVHVLDGGPSDVGIESTI 185 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQVRLR 239 +++ +LRPG + + + V + + P++ G LK+HYAPR+ + L Sbjct: 186 LDLSRGFPA-LLRPGHVSPRQIADVLGVAPRLPDGSDATAPRASGTLKAHYAPRTPLALA 244 Query: 240 A 240 A Sbjct: 245 A 245 >gi|167893038|ref|ZP_02480440.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 7894] Length = 257 Score = 225 bits (575), Expect = 5e-57, Method: Composition-based stats. Identities = 80/243 (32%), Positives = 121/243 (49%), Gaps = 14/243 (5%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + A+ A LDAG +A PTETVYGL D++NP A+ R+Y K RPA +P+I H++ S Sbjct: 10 AEAIEDAAARLDAGELVAFPTETVYGLGADAQNPAAVARIYAAKGRPANHPVIVHLAPGS 69 Query: 69 MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 P + L FWPGPLTL+L T I + + R P + Sbjct: 70 DPGYWVEALPADAKKLIDAFWPGPLTLILKR--ATHIPDAVSGGQDSVGLRCPSHPVAQA 127 Query: 127 LIETYG------HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L+ + +A PSANR G +S T +H+ + ++DGG S +G+ESTI Sbjct: 128 LLRAFDARRGGHGGVAAPSANRFGHVSPTTAQHVRDEF--GDAVHVLDGGPSDVGIESTI 185 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQVRLR 239 +++ +LRPG + + + V + + P++ G LK+HYAPR+ + L Sbjct: 186 LDLSRGFPA-LLRPGHVSPRQIADVLGVAPRLPDGSDATAPRASGTLKAHYAPRTPLALA 244 Query: 240 AIH 242 A Sbjct: 245 AFE 247 >gi|123473197|ref|XP_001319788.1| Sua5/YciO/YrdC/YwlC family protein [Trichomonas vaginalis G3] gi|121902579|gb|EAY07565.1| Sua5/YciO/YrdC/YwlC family protein [Trichomonas vaginalis G3] Length = 350 Score = 224 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 96/347 (27%), Positives = 151/347 (43%), Gaps = 30/347 (8%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M + T L A + ++AG +A PTETVYGL A+ +++ K RP +PL Sbjct: 1 MAKVLTTSEEDLTIAAKQINAGGLVAFPTETVYGLGAH-LEEKALAQIFAAKHRPYSDPL 59 Query: 61 ICHVSDISMVKKHASVDPLS----LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 I H + KK+ + LA FWPGP+TLV +T + PL A Sbjct: 60 ITHFATAEAAKKYLILTDEESANFDKLAAAFWPGPMTLVAP--ATKAVPPLVMAGTGCVG 117 Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 RVP + +E G P+A PSAN G +S T H++ L+I GG + IG Sbjct: 118 VRVPSHPIAHRFLEICGEPVAAPSANLFGHVSPTTCDHVMYDLGQTPDLLVISGGNATIG 177 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQ 235 +EST++ + K + +LRPG + +++ I + SPG HYAP Sbjct: 178 IESTVLRLHG-KNITVLRPGFITAGQVEQVIPGSVTRDAGVQEKLASPGHETRHYAPNMP 236 Query: 236 VRL-----------RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFN 284 L + + + P LI F + +LS G + +A N++N Sbjct: 237 TYLVRKQGSKDAVEQTVSLTPDTVLIDFNRTFSTASSQVLRYFDLSPVGNVADAVRNVYN 296 Query: 285 YMKIAD-DSGAS-SIAFSSIP--------NHGLGIAINNRLERAAAP 321 ++ A+ GA I + ++ L ++ +RL R+A+ Sbjct: 297 VLRDAEVTPGAKQCIIADILESGNHDDTHDNELCNSLRDRLLRSASH 343 >gi|114567901|ref|YP_755055.1| hypothetical protein Swol_2395 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338836|gb|ABI69684.1| translation factor SUA5 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 318 Score = 224 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 87/329 (26%), Positives = 148/329 (44%), Gaps = 39/329 (11%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 +A + A +A PTETVYGL + A+ +++ K R NPL+ H+S + V+ Sbjct: 2 QAASLIKAQELVAFPTETVYGLGAAAFQSQAVEKIFLAKGRAETNPLLLHLSCMEQVESV 61 Query: 74 A-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY 131 A + P ++ L + FWPGPL+++L T + + T R+P LI+ Sbjct: 62 AKEIPPAAIMLMERFWPGPLSIILPARET--VPAIVRGGKTTVGLRMPAHPVALALIDQA 119 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 G PLA PSAN SG+ S +H+ + + +I I+D G + +GLESTI+++ RI Sbjct: 120 G-PLAAPSANLSGRPSPVTAEHV-KADLDGKIAAILDAGPTGLGLESTIIDLSNPG-YRI 176 Query: 192 LRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIR 251 LR GG+ +E L++A+ + + E HY S++ L + L Sbjct: 177 LRQGGITVEELEKAMGMSITVNNPEQE-------HFPHYQIESKLLLCQSWEEMDDYLSN 229 Query: 252 FGNVPIK-------------------NIENAIISLNLSKTGKLKEAAFNLFNYMKIADDS 292 + K + S +L L A L++ ++ A++ Sbjct: 230 IEQLEKKLVLVHTYIDKNDTRWEKLIDKYPQYQSYDL----DLNTATNRLYSLLREAEER 285 Query: 293 GASSIAFSSIPNHGLGIA-IN-NRLERAA 319 + F+ + GIA + +R+ +AA Sbjct: 286 EIELLLFTPLHKKLGGIARVMLDRIYQAA 314 >gi|322500549|emb|CBZ35626.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 386 Score = 223 bits (569), Expect = 3e-56, Method: Composition-based stats. Identities = 106/371 (28%), Positives = 162/371 (43%), Gaps = 53/371 (14%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M + T LR+A + L G +AIPTETVYGL ++ +A++ +Y +K RP +PL Sbjct: 1 MAQIIGTSPEDLRRAADALVQGKLVAIPTETVYGLGGNALIGSAVKSIYAVKGRPPTDPL 60 Query: 61 ICHVSDISMVKKHAS--VDPLSLHLA----KLFWPGPLTLVLDLLSTTDIHPLSTANLKT 114 ICHV + +K D ++ LA WPGPLT+V T + T Sbjct: 61 ICHVYTLDGARKLWDLKWDEGAVELACTIGAALWPGPLTIVCKASPT--LPDCVTGGSGY 118 Query: 115 ACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP--LIIDGGI 171 R+P T KL+E P+A PSAN G +S T +H+ + P LIIDGG Sbjct: 119 VGARIPNNPITLKLLEMADVPVAAPSANTFGHVSPTTAQHVY-DDLAARDPELLIIDGGQ 177 Query: 172 SKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS-------VELEYCV---DETSTPQ 221 S IG+EST+ V+ V +LR G + + + RAI+ VE+ D P Sbjct: 178 SAIGIESTVAKVEANDLVVVLRRGCITVSMIHRAIADRYPQTRVEIRDTRIMCDPAKAPM 237 Query: 222 -SPGMLKSHYAPRSQVRL----------------------RAIHVNPREALIRFGNVPIK 258 SPG L +HY+P L + + ++ F + Sbjct: 238 VSPGQLLTHYSPHVPSSLLTPGSLAALTASADVPVYVHRGKDVVPLCETVVLDFNGYLSR 297 Query: 259 NIENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSIAFSSIPN-------HGLGIA 310 + + ++S G +E + +F+ ++ + GA + F I L A Sbjct: 298 FRDTCLFYHDMSPDGNPEEGCYAVFDALRATETIKGAKGLVFPLISEWPHDKAKEDLLTA 357 Query: 311 INNRLERAAAP 321 + +RL RAA+ Sbjct: 358 MEDRLFRAASG 368 >gi|146092262|ref|XP_001470247.1| hypothetical protein [Leishmania infantum] gi|134085041|emb|CAM69442.1| conserved hypothetical protein [Leishmania infantum JPCM5] Length = 386 Score = 223 bits (569), Expect = 3e-56, Method: Composition-based stats. Identities = 107/371 (28%), Positives = 164/371 (44%), Gaps = 53/371 (14%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M + T LR+A + L G +AIPTETVYGL ++ +A++ +Y +K RP +PL Sbjct: 1 MAQIIGTSPEDLRRAADALVQGKLVAIPTETVYGLGGNALIGSAVKSIYAVKGRPPTDPL 60 Query: 61 ICHVSDISMVKKHAS--VDPLSLHLA----KLFWPGPLTLVLDLLSTTDIHPLSTANLKT 114 ICHV + +K D ++ LA WPGPLT+V T + T Sbjct: 61 ICHVYTLDGARKLWDLKWDEGAVELACTIGAALWPGPLTIVCKASPT--LPDCVTGGSGY 118 Query: 115 ACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP--LIIDGGI 171 R+P T KL+E P+A PSAN G +S T +H+ + P LIIDGG Sbjct: 119 VGARIPNNPITLKLLEMADVPVAAPSANTFGHVSPTTAQHVY-DDLAARDPELLIIDGGQ 177 Query: 172 SKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS-------VELEYCV---DETSTPQ 221 S IG+EST+ V+ + V +LR G + + + RAI+ VE+ D T P Sbjct: 178 SAIGIESTVAKVEAKDLVVVLRRGCITVSMIHRAIADRYPQTRVEIRDTRIMCDPTKAPM 237 Query: 222 -SPGMLKSHYAPRSQVRL----------------------RAIHVNPREALIRFGNVPIK 258 SPG L +HY+P L + + ++ F + Sbjct: 238 VSPGQLLTHYSPHVPSSLLTPGSLAALTASADVPVYVHRGKDVVPLCETVVLDFNGYLSR 297 Query: 259 NIENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSIAFSSIPN-------HGLGIA 310 + + ++S G +E + +F+ ++ + GA + F I L A Sbjct: 298 FRDTCLFYHDMSPDGNPEEGCYAVFDALRATETIKGAKGLVFPLISEWPHDKAKEDLLTA 357 Query: 311 INNRLERAAAP 321 + +RL RAA+ Sbjct: 358 MEDRLFRAASG 368 >gi|322493293|emb|CBZ28578.1| conserved hypothetical protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 382 Score = 223 bits (568), Expect = 4e-56, Method: Composition-based stats. Identities = 114/370 (30%), Positives = 172/370 (46%), Gaps = 54/370 (14%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 QI+ T + LR+A + L G +AIPTETVYGL ++ +A +R+Y +K RPA++PLI Sbjct: 3 QIIGTTPED-LRRAADALLEGKLVAIPTETVYGLGGNALIESAGKRIYAVKGRPAIDPLI 61 Query: 62 CHVSDISMVKKHAS--VDPLSLHLA----KLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115 CHV + V+K D ++ LA WPGPLT+V + + T Sbjct: 62 CHVYSLDGVRKLWDLKWDEGAVELACTIGAALWPGPLTIVCKASPS--LPGCVTGGSGYV 119 Query: 116 CFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP--LIIDGGIS 172 R+P T KL+E P+A PSAN G +S T +H+ + P LIIDGG S Sbjct: 120 GARIPNNPITLKLLEMVDVPVAAPSANTFGHVSPTTAQHVY-DDLAARDPELLIIDGGQS 178 Query: 173 KIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS-------VELEYCV---DETSTPQ- 221 IG+EST+ V+ + V +LR G + + + RAI+ VE+ D T TP Sbjct: 179 AIGIESTVAKVESKDLVVVLRRGRITVSMIHRAIADSYPQTRVEIRDTRIMYDSTKTPMV 238 Query: 222 SPGMLKSHYAPRSQVRL----------------------RAIHVNPREALIRFGNVPIKN 259 SPG L +HY+P L + + ++ F + Sbjct: 239 SPGQLLTHYSPSVPSSLLTPGSLAALTAAADVPVYVHRGKDVVPLCETIVLDFNGYLSRF 298 Query: 260 IENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSIAFSSI-------PNHGLGIAI 311 + + ++S G +E F +F+ ++ + GA S+ F I P L A+ Sbjct: 299 RDTCLSYHDISPDGNPEEGCFAVFDALRATETVKGAKSLVFPLISEWPHDKPKEDLLAAM 358 Query: 312 NNRLERAAAP 321 +RL RAA+ Sbjct: 359 EDRLFRAASG 368 >gi|226325557|ref|ZP_03801075.1| hypothetical protein COPCOM_03362 [Coprococcus comes ATCC 27758] gi|225206040|gb|EEG88394.1| hypothetical protein COPCOM_03362 [Coprococcus comes ATCC 27758] Length = 412 Score = 223 bits (568), Expect = 5e-56, Method: Composition-based stats. Identities = 68/247 (27%), Positives = 111/247 (44%), Gaps = 32/247 (12%) Query: 100 STTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSS 158 + +T L+T R+P ++LI G ++ PSAN SG+ S T +H+ + Sbjct: 5 KNEKVPLGTTGGLETVAVRMPDDEIARELILAGGGYVSAPSANTSGRPSPTTAQHV-AED 63 Query: 159 ICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDET- 217 + +I +I+DGG IG+ESTI+++ + ILRPG + E L I E VDET Sbjct: 64 LSGKIEMILDGGSVDIGVESTILDMTVTPPM-ILRPGAITKEMLSEVIG---EVAVDETL 119 Query: 218 ------STPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNI----------- 260 P++PGM HYAP++++ + + P EA+ + + + Sbjct: 120 ISENSTKAPKAPGMKYRHYAPKAEMII--VDGEPEEAVRAIKQIAYEQVRLGYKVGIIAS 177 Query: 261 ------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNR 314 + + K A NL+ ++ D+ I + P G+G AI NR Sbjct: 178 NESVDQYTTGVVKCIGSRVNEKTVARNLYKVLREFDEEEVDYIYSEAFPEAGIGTAIMNR 237 Query: 315 LERAAAP 321 L +AA Sbjct: 238 LGKAAGH 244 >gi|209881512|ref|XP_002142194.1| hypothetical protein [Cryptosporidium muris RN66] gi|209557800|gb|EEA07845.1| hypothetical protein, conserved [Cryptosporidium muris RN66] Length = 393 Score = 219 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 106/372 (28%), Positives = 156/372 (41%), Gaps = 57/372 (15%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+I I D + + ++L G +AIPTETVYGL ++ N +I +Y+IK RP NPL Sbjct: 1 MKISDIGDDICVEEYVKYLLDGDLVAIPTETVYGLGGNAFNQKSILDIYKIKGRPKNNPL 60 Query: 61 ICHVSDISMVKKHA-----SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115 ICHV + V+ + LA FWPGPL+L+ ++I A Sbjct: 61 ICHVYSFEQAELQVFELTHKVNVVYKQLAFKFWPGPLSLI--GKKKSEIIEDV-ALSGKV 117 Query: 116 CFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSS-------SICKEIPLII 167 R P T K I+ P+A PSANRSG IS TN +HI+ I I ++ Sbjct: 118 AVRCPNNGLTLKFIKMANVPIAAPSANRSGHISPTNPQHIIKEFTEQYMREIGVNIWILY 177 Query: 168 DGGISKIGLESTIVN-VQCEKKVRILRPGGLEIETLKRAI--------------SVELEY 212 D IG+EST++ V+ ++ I RPG + + + + + Y Sbjct: 178 DRDCCNIGVESTVIEYVEDTNEIIIYRPGAISKCDILNCLTKDNQFIKSQSWIKDINIRY 237 Query: 213 CVDET---STPQSPGMLKSHYAPRSQVRLRAIHVN------------PREALIRFGNVPI 257 E P SPGM HY+P L + N +I G+ Sbjct: 238 FSRENRDLDLP-SPGMDIKHYSPIVSTFLIKVTDNLLSSAKPINTNIQNIIIIDIGHKLE 296 Query: 258 KNIENAIISLNLSK-TGKLKEAAFNLFNYMKIADDS--------GASSIAFSSI-PNHGL 307 + ++LS+ K+A NLFN + A+D I P + Sbjct: 297 FLTSEVGVYMSLSEYEDDFKQACRNLFNSLHKAEDMALSKFPDPNKVKIFLMGFKPQDDI 356 Query: 308 GIAINNRLERAA 319 A+ +RL RA+ Sbjct: 357 SSALWDRLYRAS 368 >gi|291001607|ref|XP_002683370.1| predicted protein [Naegleria gruberi] gi|284096999|gb|EFC50626.1| predicted protein [Naegleria gruberi] Length = 380 Score = 217 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 95/380 (25%), Positives = 158/380 (41%), Gaps = 76/380 (20%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 + E L G ++ PTETVYGL ++ + A+ +++ KKRP +P+I HV D+ KK Sbjct: 1 EECSEHLRNGGLVSFPTETVYGLGANALDEKAVYSIFKAKKRPLTDPVIVHVLDVDQAKK 60 Query: 73 HASVDP------LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + +++ L HLA FWPGPLTLV I TA+ RVP + Sbjct: 61 YITIEENSLHMRLYEHLAATFWPGPLTLVSKSNEQV-IPDCVTASTGFVGIRVPAHPIIR 119 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI-------------- 171 KL+E P++ PSANR G IS T H++ I + + Sbjct: 120 KLLEHCKLPISAPSANRFGHISPTRASHVMEDLGLYGKDEIDNENVFRILVLEEENNSES 179 Query: 172 ---SKIGLESTIVNVQCEK----KVRILRPGGLEIETLKR-----------------AIS 207 +G+EST+ + + K+ +LR GG+ +E LK+ + Sbjct: 180 KTECSVGIESTVAKISELEDKSLKIEVLRRGGISLEQLKKSVQEFILEESNTRGTIPEVK 239 Query: 208 VELEYCV-----DETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA-------------- 248 VE + ++ + +PG L +HYAP + + A Sbjct: 240 VEARHQTYSVKMNDNTAQIAPGQLITHYAPYVPAFILDSQTSVNCAASEKTTRVSIEDSI 299 Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFN-LFNYMKIADD-SGASSIAFSSIP--- 303 L+ FG + + ++LS + + A N +F ++ + A +I +P Sbjct: 300 LVDFGGKLNHLSSHCMHYIDLSPSSDIN-IARNKVFQVLRDCEKIENAKAIL---LPNLL 355 Query: 304 --NHGLGIAINNRLERAAAP 321 + ++ +RL RAA+ Sbjct: 356 NVDIEHADSLFDRLFRAASG 375 >gi|120613197|ref|YP_972875.1| translation factor SUA5 [Acidovorax citrulli AAC00-1] gi|120591661|gb|ABM35101.1| translation factor SUA5 [Acidovorax citrulli AAC00-1] Length = 336 Score = 217 bits (553), Expect = 3e-54, Method: Composition-based stats. Identities = 88/316 (27%), Positives = 143/316 (45%), Gaps = 30/316 (9%) Query: 28 PTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLSLHLAKL 86 PTETVYGLA D+ + A+ +++E K RP+ +PLI HV+ + ASV P + L + Sbjct: 27 PTETVYGLAADAASDAAVAQIFEAKGRPSDHPLIVHVAGPEGIPHFAASVPPFAEALVRA 86 Query: 87 FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETY---------GHP--- 134 FWPGPLTL+L L D + + R P + + G P Sbjct: 87 FWPGPLTLILPRLP--DRAAAAAGGQNSVGLRCPAHPVAQAVLKACASDDPALGGQPVHG 144 Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194 +A PSANR G++S T +H+ + ++DGG +G+ESTI++ V +LRP Sbjct: 145 VAAPSANRFGRVSPTTAQHVQDEFGEGLV--VLDGGPCAVGIESTIIDCTRGVPV-LLRP 201 Query: 195 GGLEIETLKRAISV-ELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV---------N 244 G + + A + L + TP++ G L++HYAP ++VRL Sbjct: 202 GAITRAEIAAACGLSPLSKEELPSHTPRASGTLEAHYAPSAKVRLMDAKALQAGLELLGA 261 Query: 245 PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPN 304 L + +++ ++ + + ++ DD+G I + P Sbjct: 262 EARHLAVYARARLRSPSPGVVLRRMPEDAAAAARELF--AALRDFDDAGVKLIWVETPPE 319 Query: 305 HGLGIAINNRLERAAA 320 + +RL+RAAA Sbjct: 320 TPDWEGVRDRLQRAAA 335 >gi|219115932|ref|XP_002178761.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|219115936|ref|XP_002178763.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217409528|gb|EEC49459.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217409530|gb|EEC49461.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 357 Score = 216 bits (552), Expect = 3e-54, Method: Composition-based stats. Identities = 84/341 (24%), Positives = 152/341 (44%), Gaps = 40/341 (11%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L G ++ PTETVYGL + + A R+++ K+RP +PLI HV++ + ++ Sbjct: 12 LRRGDLVSFPTETVYGLGCHALDELACRKVFAAKERPLTDPLIVHVNEEAKAQELWQATA 71 Query: 79 LSLH------LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETY 131 SL L FWPGPLTLV +T+ + + A R P + LI + Sbjct: 72 DSLEGRILACLIHEFWPGPLTLV--AKATSSVPSVLMAGTGFVACRSPSHPTARALIASA 129 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR- 190 G P+A PSAN+ G +S T H+ +++ ++ + ++G+ES++ ++ + K R Sbjct: 130 GVPIAAPSANKFGHVSPTCADHVFDDLRYEDVWIVEEDEPLQVGVESSVAKLEMQDKARG 189 Query: 191 ---ILRPGGLEIETLKRAI------SVELE----YCVDETSTPQSPGMLKSHYAPRSQVR 237 +LR G + + L+R + SV++ + +PG HY+P Sbjct: 190 VLTVLRQGAISVLDLQRCLRKANIDSVQVRANTSRSTSDEEANVAPGQTVRHYSPNIPSF 249 Query: 238 LRAIHVN------------PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNY 285 L + + ++ +G + E +LS +AA +F+ Sbjct: 250 LVSKYCVESYMNDGNQSKLADTVIVDYGETMLSWKEYCAAYRDLSSVADSTKAAQAVFDT 309 Query: 286 MKIADD-SGASSIAFSSIPNHGLG----IAINNRLERAAAP 321 ++ A+ GAS + F + +A+ ++L RAA+ Sbjct: 310 LRWAEQVEGASRVLFPDLEVDDESDALILAVKDKLTRAASG 350 >gi|284161228|ref|YP_003399851.1| Sua5/YciO/YrdC/YwlC family protein [Archaeoglobus profundus DSM 5631] gi|284011225|gb|ADB57178.1| Sua5/YciO/YrdC/YwlC family protein [Archaeoglobus profundus DSM 5631] Length = 289 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 84/306 (27%), Positives = 137/306 (44%), Gaps = 42/306 (13%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + LR+ + G +A PTETVYGL ++ + A++RL+E+K RP P+ VSD+ Sbjct: 13 DESVLREVAHMIKEGKLVAYPTETVYGLGTNALDENAVKRLFEVKGRP-KKPVSVVVSDL 71 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKK 126 V++ A + +L L + F+PGP+T+++ I P+ TA R+P K Sbjct: 72 DHVERIAEPNETALKLMEKFFPGPITIIV--KKKKVIPPIVTAGTDKIGIRLPDYKIPLK 129 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L E G P+ SAN SG+ S T +HI+ + K I I+D G + + +EST+++ E Sbjct: 130 LAEFSGVPVTSTSANVSGKPSPTKPEHIMVDFMGK-IDAILDAGETPLKIESTVIDTTTE 188 Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246 R+LR G L + +++ + E+E Y P+++V Sbjct: 189 -PPRVLRVGALPLNEIEKVVG-EVEVLD------------YRAYKPKAKVVAVFKGDVEE 234 Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306 A G V I +KE +L + ++ I F I Sbjct: 235 VASRFEGRVCI-----------------IKEV-KDLMDVLRRC--KDCDVIVFECID--- 271 Query: 307 LGIAIN 312 L A+ Sbjct: 272 LSEAVR 277 >gi|224000475|ref|XP_002289910.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220975118|gb|EED93447.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 410 Score = 211 bits (537), Expect = 2e-52, Method: Composition-based stats. Identities = 84/356 (23%), Positives = 148/356 (41%), Gaps = 48/356 (13%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 +L A E L +G ++ PTETVYGL + +P A++R+++ K+RP +PLI HV+ + Sbjct: 51 SLTTAGERLRSGHLVSFPTETVYGLGCHALDPVAVQRVFDAKERPLSDPLIVHVTSQQIQ 110 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + L F+PGPLT+V + I + AN R P + LI+ Sbjct: 111 QMQQLEKQALQTLTASFFPGPLTIVAKAKPS--IPQILMANTGYVACRSPSHPIARALIK 168 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC-EKK 188 P+A PSAN+ G +S T +H++ + +E I D + ++G+EST+ Sbjct: 169 CAKCPIAAPSANKFGHVSPTLARHVM-DDLGREDVWISDSAVCQVGVESTVAKDNGFVGS 227 Query: 189 VRILRPGGLEIETLKRAIS-------VELEYCV---DETSTPQSPGMLKSHYAPRSQVRL 238 + +LR G + ++ A+ +++ V E +PG HY+P + Sbjct: 228 ITVLRHGAISSAAIRVALKQSNLDQYFDVKDAVQYTPENVNNVAPGQTVKHYSPNVPCFM 287 Query: 239 RAIHVNP-----------------REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFN 281 + +I + + +A+ +LS G AA N Sbjct: 288 VGSSRQQSADTTAVVTEEEKSILSQSVIIDYAQSLLHYQPHALAYRDLSTDGNSNIAASN 347 Query: 282 LFNYMKIADDSG------ASSIAFSSIPNH-------GLG---IAINNRLERAAAP 321 +F ++ ++ I G G +A+ ++L RAA+ Sbjct: 348 VFAVLRWSESIEGAIRVFVPEIVLEDGEEEGRSVGGKGEGALVLAVKDKLTRAASG 403 >gi|328463675|gb|EGF35267.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus rhamnosus MTCC 5462] Length = 272 Score = 210 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 76/263 (28%), Positives = 124/263 (47%), Gaps = 15/263 (5%) Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129 ++A++ P + L FWPGPLT++L++L + T L+TA FR P T+KLI Sbjct: 1 SQYATITPDAAKLMDTFWPGPLTIILNILPGR-LSMKVTGGLQTAAFRNPDDALTRKLIA 59 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 T G P+ PSAN SG+ S T H+L + +I ++D G +++G+ESTI+++ Sbjct: 60 TAGVPIVGPSANTSGKPSPTTADHVL-HDLADKIAGVLDDGPTRVGVESTIIDLTVTPPA 118 Query: 190 RILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247 ILRPG + L+ + + V + P++PGM HYAP +QV + + Sbjct: 119 -ILRPGAIGPHELEPLLGPVDSAAHHVGKNEAPKAPGMKYKHYAPAAQVVVVDTIDQFDD 177 Query: 248 ALI-------RFGNVPIKNIENAIISLNLSKTG-KLKEAAFNLFNYMKIAD-DSGASSIA 298 A+ FG + I + G + A LF ++ D + + Sbjct: 178 AVAWAKKTGQAFGLLATDPILAHFPDVPSYSLGQDITSATHALFAGLRWFDLHPDVTLVL 237 Query: 299 FSSIPNHGLGIAINNRLERAAAP 321 + + L A NRL ++A Sbjct: 238 AQAFSHSELSAAYMNRLLKSAGN 260 >gi|157871880|ref|XP_001684489.1| hypothetical protein [Leishmania major strain Friedlin] gi|68127558|emb|CAJ05637.1| conserved hypothetical protein [Leishmania major strain Friedlin] Length = 386 Score = 210 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 102/374 (27%), Positives = 160/374 (42%), Gaps = 59/374 (15%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M + T LR+A + L G +AIPTETVYGL ++ +A++ +Y +K RP +PL Sbjct: 1 MAQIIGTSPEDLRRAADALVQGKLVAIPTETVYGLGGNALIGSAVKSIYAVKGRPPTDPL 60 Query: 61 ICHVSDISMVKKHAS--VDPLSLHLA----KLFWPGPLTLVLDLLSTTDIHPLSTANLKT 114 ICHV + + D ++ LA WPGPLT+V T + T Sbjct: 61 ICHVYTLDGACRLWDQKWDEGAVELACTIGAALWPGPLTIVCKANPT--LPDCVTGGSGY 118 Query: 115 ACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP--LIIDGGI 171 R+P KL+E P+A PSAN G +S T +H+ + P LIIDGG Sbjct: 119 VGARIPNNPVALKLLEMVDAPVAAPSANTFGHVSPTTAQHVY-DDLAARDPELLIIDGGQ 177 Query: 172 SKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS-------VELEY----CVDETSTP 220 S IG+EST+ V+ + V +LR G + + + RAI+ VE+ C + Sbjct: 178 SAIGIESTVAKVESKDLVVVLRRGCITVSMIHRAIAGRYPQTRVEIRDTRIMCDPAKALM 237 Query: 221 QSPGMLKSHYAPRSQVRL----------------------RAIHVNPREALIRFGNVPIK 258 SPG L +HY+P L + + ++ F + Sbjct: 238 VSPGQLLTHYSPHVPSSLLTPGSLGALTASADVPVYVHRGKDVVPLCETIVLDFNGYLSR 297 Query: 259 NIENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSIAFSSIPNHGLG--------- 308 + + ++S G +E + +F+ ++ + GA + F I Sbjct: 298 FKDACLSYHDMSPDGNPEEGCYAVFDALRATETVKGAKGLVFPLISE---WPHAKAKADL 354 Query: 309 -IAINNRLERAAAP 321 A+ +RL RAA+ Sbjct: 355 LAAMEDRLFRAASG 368 >gi|167835602|ref|ZP_02462485.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia thailandensis MSMB43] Length = 231 Score = 208 bits (531), Expect = 7e-52, Method: Composition-based stats. Identities = 70/231 (30%), Positives = 111/231 (48%), Gaps = 14/231 (6%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 I + + +A LDAG +A PTETVYGL D++NP A+ R+Y K RPA +P+I H+ Sbjct: 6 PIPTAEQIDEAAGLLDAGELVAFPTETVYGLGGDAQNPAAVARIYAAKGRPANHPVIVHL 65 Query: 65 SDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 + S + + L FWPGPLTL+L + I + + R P Sbjct: 66 APGSDPGYWVDSLPADAQKLIDAFWPGPLTLILKRAAH--IPDAVSGGQDSVGLRCPSHP 123 Query: 123 FTKKLIETYG------HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 + L+ + +A PSANR G +S T +H+ + ++DGG S +G+ Sbjct: 124 VAQALLRAFDARRGGHGGVAAPSANRFGHVSPTTAQHVRDEF--GDAVHVLDGGPSDVGI 181 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-ETSTPQSPGML 226 ESTI+++ +LRPG + + + V + + P++ G L Sbjct: 182 ESTILDLSRGFPA-LLRPGQVTPRQIADVLGVAPRLPDGSDATAPRASGTL 231 >gi|160872705|ref|ZP_02062837.1| Sua5/YciO/YrdC family protein [Rickettsiella grylli] gi|159121504|gb|EDP46842.1| Sua5/YciO/YrdC family protein [Rickettsiella grylli] Length = 307 Score = 206 bits (524), Expect = 5e-51, Method: Composition-based stats. Identities = 85/309 (27%), Positives = 144/309 (46%), Gaps = 13/309 (4%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + +N L A L AG I +PTETVY LA D+ N AI +++ +K+RP PL ++ Sbjct: 1 MITNNELASAVSCLKAGKLIVLPTETVYALAGDATNLNAILQIFSLKRRPLNQPLSVLLA 60 Query: 66 DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 + + A + ++ LA+ FWPGPLTL+L T + P T RVP Sbjct: 61 KEHPMTRWARDIPEVAEKLAERFWPGPLTLILKKEKT--VLPELTGGQHKIGLRVPDHPI 118 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + ++ ++ +A PSANRS +S T++KH+ + + + +IDGG +IG+ESTI++V Sbjct: 119 AQAVLSSFARGVAAPSANRSTALSPTHIKHV-RAEFDQPLEWMIDGGPCRIGIESTIIDV 177 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQV-RLRAIH 242 RILR G L + + E+E + + P + + P+ + + H Sbjct: 178 TFTIP-RILRLGALPLAKIASITPYEIEKSTSPSCFSKKPLITQ---VPKQVLDEVIDTH 233 Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302 +N + L F P K + + + L++Y+ + + I ++ Sbjct: 234 LNHYQPLTVFAFSPAKKKHKNVTWIQMPSEASR--YGQQLYHYLHQS-KAMHHRILVEAV 290 Query: 303 PNHGLGIAI 311 P I Sbjct: 291 PKRNHWAGI 299 >gi|11497366|ref|NP_051465.1| hypothetical protein BBU11 [Borrelia burgdorferi B31] gi|11497448|ref|NP_051542.1| hypothetical protein BB_T06 [Borrelia burgdorferi B31] gi|216264952|ref|ZP_03436942.1| putative Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi 156a] gi|6382387|gb|AAF07698.1|AE001582_6 conserved hypothetical protein [Borrelia burgdorferi B31] gi|6435847|gb|AAF08548.1|AE001583_3 conserved hypothetical protein [Borrelia burgdorferi B31] gi|34734011|gb|AAQ81893.1| conserved hypothetical protein [Borrelia burgdorferi] gi|215980592|gb|EEC21401.1| putative Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi 156a] Length = 330 Score = 206 bits (524), Expect = 5e-51, Method: Composition-based stats. Identities = 83/335 (24%), Positives = 137/335 (40%), Gaps = 22/335 (6%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I + + A + + G I PT+TVY + + + A+R + +KK+ PL Sbjct: 1 MIKTPIISEDQFKIALKLIKMGEIIVFPTDTVYAIGANIYDEYAVRMINLVKKKSINEPL 60 Query: 61 ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 + +V I +K+ +S P S L + F PGPLT VL + I NL T R+ Sbjct: 61 MLYVDTIEKIKELSSHVPKSAKILMEKFSPGPLTYVL--KKSIKIPKFINNNLDTVAIRI 118 Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI---SKIG 175 P LI +PL + SAN S + S T+ L + + II S IG Sbjct: 119 PKNKTALNLIRKLKNPLVVSSANLSKRPSSTSFSMALKE-LNGLVGGIIMPKKNKDSNIG 177 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQ 235 +ESTI+ + V ILRPG + + +++ + + + + LK ++ R + Sbjct: 178 IESTIIEFDSKDNVIILRPGAITKKMIEKVLGSRYKVNYAKETKID----LKKMFSYRLR 233 Query: 236 VRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGK---------LKEAAFNLFNYM 286 + + N + + S L E A NL+ + Sbjct: 234 IPVHTFKRGDNIRKYLKTNTKVLITRDTFKFYFFSFLWDKKNIILFDSLIEYAENLYKEL 293 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 A + + + N LG AINNR+ +A++ Sbjct: 294 VNA-EEKYDQVIVEIVENEELGYAINNRIVKASSN 327 >gi|124027648|ref|YP_001012968.1| hypothetical protein Hbut_0770 [Hyperthermus butylicus DSM 5456] gi|123978342|gb|ABM80623.1| universally conserved protein [Hyperthermus butylicus DSM 5456] Length = 214 Score = 204 bits (521), Expect = 1e-50, Method: Composition-based stats. Identities = 58/201 (28%), Positives = 99/201 (49%), Gaps = 5/201 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +R A + G + PT+TVYGL + + A+ R++ K+RP+ P+ VS + + Sbjct: 17 IRVAARIVALGGLVVYPTDTVYGLGANPFSSYAVWRVFRAKERPSNRPIPVLVSSLRAAE 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 K A +D + LA+ FWPGPLT+V+ + + L A RVP K IE Sbjct: 77 KIAELDDRARRLAERFWPGPLTIVVP--AKPGLPSLLHAGTGRIGVRVPNHPIALKFIEA 134 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G + SAN + S V+ + + + + +DGG + G ST+V++ K R Sbjct: 135 VGGAITGTSANLHRKPSPCTVQEAMK-QLGCRVDIYLDGGPTPGGTPSTVVDLTTPKP-R 192 Query: 191 ILRPGGLEIETLKRAISVELE 211 ++R G + E ++ ++ +E Sbjct: 193 LVRRGPIPPEEIEAVLATPIE 213 >gi|167737355|ref|ZP_02410129.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 14] Length = 228 Score = 203 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 108/224 (48%), Gaps = 14/224 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + A+ A LDAG +A PTETVYGL D++NP A+ R+Y K RPA +P+I H++ S Sbjct: 10 AEAIEDAAARLDAGELVAFPTETVYGLGADAQNPAAVARIYAAKGRPANHPVIVHLAPGS 69 Query: 69 MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 P + L FWPGPLTL+L T I + + R P + Sbjct: 70 DPGYWVEALPADAKKLIDAFWPGPLTLILKR--ATHIPDAVSGGQDSVGLRCPSHPVAQA 127 Query: 127 LIETYG------HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L+ + +A PSANR G +S T +H+ + ++DGG S +G+ESTI Sbjct: 128 LLRAFDARRGGHGGVAAPSANRFGHVSPTTAQHVRDEF--GDAVHVLDGGPSDVGIESTI 185 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-ETSTPQSP 223 +++ +LRPG + + + V + + P++ Sbjct: 186 LDLSRGFPA-LLRPGHVSPRQIADVLGVAPRLPDGSDATAPRAS 228 >gi|167844511|ref|ZP_02470019.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei B7210] Length = 227 Score = 203 bits (517), Expect = 3e-50, Method: Composition-based stats. Identities = 70/223 (31%), Positives = 108/223 (48%), Gaps = 14/223 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + A+ A LDAG +A PTETVYGL D++NP A+ R+Y K RPA +P+I H++ S Sbjct: 10 AEAIEDAAARLDAGELVAFPTETVYGLGADAQNPAAVARIYAAKGRPANHPVIVHLAPGS 69 Query: 69 MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 P + L FWPGPLTL+L T I + + R P + Sbjct: 70 DPGYWVEALPADAKKLIDAFWPGPLTLILKR--ATHIPDAVSGGQDSVGLRCPSHPVAQA 127 Query: 127 LIETYG------HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L+ + +A PSANR G +S T +H+ + ++DGG S +G+ESTI Sbjct: 128 LLRAFDARRGGHGGVAAPSANRFGHVSPTTAQHVRDEF--GDAVHVLDGGPSDVGIESTI 185 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-ETSTPQS 222 +++ +LRPG + + + V + + P++ Sbjct: 186 LDLSRGFPA-LLRPGHVSPRQIADVLGVAPRLPDGSDATAPRA 227 >gi|300087769|ref|YP_003758291.1| Sua5/YciO/YrdC/YwlC family protein [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527502|gb|ADJ25970.1| Sua5/YciO/YrdC/YwlC family protein [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 205 Score = 203 bits (517), Expect = 3e-50, Method: Composition-based stats. Identities = 67/208 (32%), Positives = 106/208 (50%), Gaps = 7/208 (3%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M ++++ + L+ A + L G +A PT+TVY LA + +AI R+++IK R L Sbjct: 1 MSVINM--ESKLKTATQILVDGGIVAFPTDTVYCLAAAICHESAIERIFQIKGRQTTKAL 58 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 V+D +++ A V ++ L + F PG LTL+L + L T T R+P Sbjct: 59 PVLVADSIQMRQVAEVSSVAEMLVRRFMPGALTLILPKKP--LVPDLVTGGKPTVAVRIP 116 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 LI+ G PL SAN SG+ S+T + S I I I+DGG+ G+EST Sbjct: 117 GHTLALYLIKAVGSPLTGTSANLSGRGSVTTAMEV-ESQIGGRIDSIVDGGLCPGGIEST 175 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAIS 207 IV++ R++R G + E +++ I Sbjct: 176 IVDLTGLTP-RLVRSGAVPKEEIEKIIG 202 >gi|312148920|gb|ADQ31566.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi JD1] Length = 330 Score = 203 bits (517), Expect = 4e-50, Method: Composition-based stats. Identities = 83/335 (24%), Positives = 137/335 (40%), Gaps = 22/335 (6%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I + + A + + G I PT+TVY + + + A+R + +KK+ PL Sbjct: 1 MIKTPIISEDQFKIALKLIKMGEIIVFPTDTVYSIGANIYDEYAVRMINLVKKKSINEPL 60 Query: 61 ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 + +V I +K+ +S P S L + F PGPLT VL + I NL T R+ Sbjct: 61 MLYVDTIEKIKELSSHVPKSAKILMEKFSPGPLTYVL--KKSIKIPKFINNNLDTVAIRI 118 Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI---SKIG 175 P LI +PL + SAN S + S T+ L + + II S IG Sbjct: 119 PKNKTALNLIRKLKNPLVVSSANLSKRPSSTSFSMALKE-LNGLVGGIIMPKKNKDSNIG 177 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQ 235 +ESTI+ + V ILRPG + + +++ + + + + LK ++ R + Sbjct: 178 IESTIIEFDSKDNVIILRPGAITKKMIEKVLGSRYKVNYAKETKID----LKKMFSYRLR 233 Query: 236 VRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGK---------LKEAAFNLFNYM 286 + + N + + S L E A NL+ + Sbjct: 234 IPVHTFKRGDNIRKYLKTNTKVLITRDTFKFYFFSFLWDKKNIILFDSLIEYAENLYKEL 293 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 A + + + N LG AINNR+ +A++ Sbjct: 294 VNA-EEKYDQVIVEIVENEELGYAINNRIVKASSN 327 >gi|224796796|ref|YP_002642475.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi WI91-23] gi|224554416|gb|ACN55801.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi WI91-23] Length = 330 Score = 202 bits (516), Expect = 4e-50, Method: Composition-based stats. Identities = 83/335 (24%), Positives = 136/335 (40%), Gaps = 22/335 (6%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I + A + + G I PT+TVY + + + A+R + +KK+ PL Sbjct: 1 MIKTPIISEYQFKIALKLIKMGEIIVFPTDTVYAIGANIYDEYAVRMINLVKKKSINEPL 60 Query: 61 ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 + +V I +K+ +S P S L + F PGPLT VL + I NL T R+ Sbjct: 61 MLYVDTIEKIKELSSHVPKSAKILMEKFSPGPLTYVL--KKSIKIPKFINNNLDTVAIRI 118 Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI---SKIG 175 P LI +PL + SAN S + S T+ L + + II S IG Sbjct: 119 PKNKTALNLIRKLKNPLVVSSANLSKRPSSTSFSMALKE-LNGLVGGIIMPKKNKDSNIG 177 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQ 235 +ESTI+ + V ILRPG + + +++ + + + + LK ++ R + Sbjct: 178 IESTIIEFDSKDNVIILRPGAITKKMIEKVLGSRYKVNYAKETKID----LKKMFSYRLR 233 Query: 236 VRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGK---------LKEAAFNLFNYM 286 + + N + + S L E A NL+ + Sbjct: 234 IPVHTFKRGDNIRKYLKTNTKVLITRDTFKFYFFSFLWDKKNIILFDSLIEYAENLYKEL 293 Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321 A + + + N LG AINNR+ +A++ Sbjct: 294 VNA-EEKYDQVIVEIVENEELGYAINNRIVKASSN 327 >gi|69249629|ref|ZP_00605027.1| SUA5 [Enterococcus faecium DO] gi|68194108|gb|EAN08648.1| SUA5 [Enterococcus faecium DO] Length = 235 Score = 202 bits (514), Expect = 7e-50, Method: Composition-based stats. Identities = 71/229 (31%), Positives = 111/229 (48%), Gaps = 18/229 (7%) Query: 109 TANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 T L TA FR+P T ++IE G PL PSAN SG+ S T H+ + +I II Sbjct: 2 TGGLSTAAFRIPDNKKTLEVIELSGVPLVGPSANTSGKPSPTTADHVY-HDLQGKITGII 60 Query: 168 DGGISKIGLESTIVNVQCEKK-VRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSP 223 D G ++IG+EST++++ ILRPG + E ++ I + ++ V E TP++P Sbjct: 61 DDGATRIGVESTVLDLSDPTAMPMILRPGAVTKEQIEAVIESPVAIDQHLVKENETPKAP 120 Query: 224 GMLKSHYAPRSQVRLRAI------HVNPREALIRFGNVPIKNIENAI----ISLNLSKTG 273 GM HY+P ++V + + IR G + I + + ++ + Sbjct: 121 GMKYKHYSPDTRVLMVRDGDWSTAVQWAKNKKIRAGVIASPEIADQVRTDTAAVYMYNDN 180 Query: 274 KLKEAAFNLFNYMKIADD--SGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ AA LF ++ D+ G I P GLG A NRL++AA Sbjct: 181 SVEAAAKGLFAGLRGLDEPTLGLDLIFVQVYPETGLGNAYMNRLKKAAG 229 >gi|67623713|ref|XP_668139.1| hypothetical protein [Cryptosporidium hominis TU502] gi|54659320|gb|EAL37902.1| hypothetical protein Chro.10272 [Cryptosporidium hominis] Length = 389 Score = 201 bits (513), Expect = 9e-50, Method: Composition-based stats. Identities = 89/360 (24%), Positives = 144/360 (40%), Gaps = 59/360 (16%) Query: 16 CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75 +++ G +AIPTETVYGL ++ + ++I ++++IK RP NPLICHV + + Sbjct: 8 AKYILNGELVAIPTETVYGLGGNAYDRSSILKIFKIKGRPINNPLICHVHSFKFAEDNVF 67 Query: 76 VDPLSLH-----LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 L FWPGPLT++ +I + + K R P T L++ Sbjct: 68 ELSERTRVIYKILTDKFWPGPLTVI--SKKRRNIVDEVSVSGK-VGVRCPNNQLTLDLLK 124 Query: 130 TYGHPLAIPSANRSGQISITNVKHI---LSSSICKEI---PLIIDGG-ISKIGLESTIVN 182 P+A PSANRSG IS T+ H+ S E+ I+DGG +G+EST++ Sbjct: 125 LSSVPIAAPSANRSGHISPTSPLHVSKEFDQSYMNEVGIKVWILDGGECCSVGVESTVLE 184 Query: 183 VQCEKK-VRILRPGGLEIETLKRAI-----------SVELEYCVDETSTP---------- 220 + + I R G + + + +++ Y S+P Sbjct: 185 YYEDGNFISIFRCGKVTKNQIWETLIDNCRNNEWIKDIKISYFGSNNSSPNRNYLSLHDT 244 Query: 221 --QSPGMLKSHYAPRSQVRLRAIHVN-----------PREALIRFGNVPIKNIENAIISL 267 SPGM HY+P +L + + LI G+ Sbjct: 245 VAISPGMDIKHYSPTICTKLISFISDTHKCTGIDVDLRNIILIDIGSKLSFLRYYVRHYF 304 Query: 268 NLSKTGKLKEAAFNLFNYMKI-------ADDSGASSIAFSSIP-NHGLGIAINNRLERAA 319 +L A NLF + DD + I + + +A+ +R+ RA+ Sbjct: 305 SLCDDYDFSSACKNLFATLHQAEDFANSLDDLSSVYIFITGFETEDNISLALWDRVYRAS 364 >gi|323508601|dbj|BAJ77194.1| cgd1_2420 [Cryptosporidium parvum] gi|323510581|dbj|BAJ78184.1| cgd1_2420 [Cryptosporidium parvum] Length = 389 Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats. Identities = 89/362 (24%), Positives = 145/362 (40%), Gaps = 59/362 (16%) Query: 16 CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75 +++ G +AIPTETVYGL ++ + ++I ++++IK RP NPLICHV + + Sbjct: 8 AKYILNGELVAIPTETVYGLGGNAYDRSSILKIFKIKGRPINNPLICHVHSFKFAEDNVF 67 Query: 76 VDPLSLH-----LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 L FWPGPLT++ +I + + K R P T L++ Sbjct: 68 ELSERTRVIYKILTDKFWPGPLTVI--SKKRHNIVDEVSVSGK-VGVRCPNNQLTLDLLK 124 Query: 130 TYGHPLAIPSANRSGQISITNVKHI---LSSSICKEI---PLIIDGG-ISKIGLESTIVN 182 P+A PSANRSG IS T H+ S E+ I+DGG +G+EST++ Sbjct: 125 LSSVPIAAPSANRSGHISPTTPLHVSKEFDQSYMNEVGIKVWILDGGECCSVGVESTVLE 184 Query: 183 VQCEKK-VRILRPGGLEIETLKRAI-----------SVELEYCVDETSTP---------- 220 + + I R G + + + + +++ Y S+P Sbjct: 185 YYEDGNFISIFRCGKVTKKQIWETLIDNCRNNEWIKEIKISYFGSNNSSPNRNYLSLHDT 244 Query: 221 --QSPGMLKSHYAPRSQVRLRAIHVN-----------PREALIRFGNVPIKNIENAIISL 267 SPGM HY+P +L + + LI G+ Sbjct: 245 VAISPGMDIKHYSPTICTKLISFISDTNKYTGINVDLRNIILIDIGSKLSFLRCYVRHYF 304 Query: 268 NLSKTGKLKEAAFNLFNYMKI-------ADDSGASSIAFSSIP-NHGLGIAINNRLERAA 319 +L A NLF + DD + I + + +A+ +R+ RA+ Sbjct: 305 SLCDDYDFSLACKNLFATLHQAEDFANSLDDLSSVYIFITGFETEDNISLALWDRVYRAS 364 Query: 320 AP 321 + Sbjct: 365 SG 366 >gi|66362214|ref|XP_628071.1| SUA5 like RNA binding domain containing protein [Cryptosporidium parvum Iowa II] gi|46227629|gb|EAK88564.1| SUA5 like RNA binding domain containing protein [Cryptosporidium parvum Iowa II] Length = 390 Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats. Identities = 89/362 (24%), Positives = 145/362 (40%), Gaps = 59/362 (16%) Query: 16 CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75 +++ G +AIPTETVYGL ++ + ++I ++++IK RP NPLICHV + + Sbjct: 9 AKYILNGELVAIPTETVYGLGGNAYDRSSILKIFKIKGRPINNPLICHVHSFKFAEDNVF 68 Query: 76 VDPLSLH-----LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 L FWPGPLT++ +I + + K R P T L++ Sbjct: 69 ELSERTRVIYKILTDKFWPGPLTVI--SKKRHNIVDEVSVSGK-VGVRCPNNQLTLDLLK 125 Query: 130 TYGHPLAIPSANRSGQISITNVKHI---LSSSICKEI---PLIIDGG-ISKIGLESTIVN 182 P+A PSANRSG IS T H+ S E+ I+DGG +G+EST++ Sbjct: 126 LSSVPIAAPSANRSGHISPTTPLHVSKEFDQSYMNEVGIKVWILDGGECCSVGVESTVLE 185 Query: 183 VQCEKK-VRILRPGGLEIETLKRAI-----------SVELEYCVDETSTP---------- 220 + + I R G + + + + +++ Y S+P Sbjct: 186 YYEDGNFISIFRCGKVTKKQIWETLIDNCRNNEWIKEIKISYFGSNNSSPNRNYLSLHDT 245 Query: 221 --QSPGMLKSHYAPRSQVRLRAIHVN-----------PREALIRFGNVPIKNIENAIISL 267 SPGM HY+P +L + + LI G+ Sbjct: 246 VAISPGMDIKHYSPTICTKLISFISDTNKYTGINVDLRNIILIDIGSKLSFLRCYVRHYF 305 Query: 268 NLSKTGKLKEAAFNLFNYMKI-------ADDSGASSIAFSSIP-NHGLGIAINNRLERAA 319 +L A NLF + DD + I + + +A+ +R+ RA+ Sbjct: 306 SLCDDYDFSLACKNLFATLHQAEDFANSLDDLSSVYIFITGFETEDNISLALWDRVYRAS 365 Query: 320 AP 321 + Sbjct: 366 SG 367 >gi|258592148|emb|CBE68453.1| conserved protein of unknown function [NC10 bacterium 'Dutch sediment'] Length = 195 Score = 200 bits (509), Expect = 3e-49, Method: Composition-based stats. Identities = 63/197 (31%), Positives = 104/197 (52%), Gaps = 6/197 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM-V 70 + +A L +G +A PT+T+Y L D+ NP A+ R++E K R + P+ V+D++M + Sbjct: 1 MAQAASVLRSGGLVAFPTDTLYALGADASNPLAVERVFEAKGRSLIKPIPLLVADLTMAI 60 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIE 129 + + ++ LA+ +WPGPLTLV+ T + L TA RVP LI Sbjct: 61 QLVGELPEAAVRLAERWWPGPLTLVVTAPRT--VCALLTAETGRIGLRVPDSAVALALIR 118 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 +G P+ SANRSGQ N +L + ++ L++DGG G ST+++V + + Sbjct: 119 QFGGPVTGTSANRSGQKDPMNAYEVL-HQLGDQVDLVLDGGPVVGGSPSTVIDVTTDPPI 177 Query: 190 RILRPGGLEIETLKRAI 206 I+R G + E + + Sbjct: 178 -IMREGPIRQEEILSVL 193 >gi|323448739|gb|EGB04634.1| hypothetical protein AURANDRAFT_12057 [Aureococcus anophagefferens] Length = 357 Score = 199 bits (507), Expect = 5e-49, Method: Composition-based stats. Identities = 91/355 (25%), Positives = 152/355 (42%), Gaps = 48/355 (13%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + L +G A PTETVYGL ++ + A+RR++E+K+RP +PLI HV++ Sbjct: 1 VEECGRVLASGGLCAFPTETVYGLGANALDEAAVRRIFEVKRRPLSDPLIVHVAEPEDAL 60 Query: 72 KHASV-------DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 + + + L + FWPGPLTLV + + A T R P Sbjct: 61 GLVDLGGARAAAHKVFVTLTRAFWPGPLTLVCP--ARNHLPACLGAGTGTVGVRCPSHGL 118 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG---------GISKI 174 + LI G P+A PSAN G +S T +H++ + ++DG Sbjct: 119 ARALIGAAGVPVAAPSANLFGHVSPTRAQHVV-DDLGASELHVLDGSAAGEFGGDPPCAH 177 Query: 175 GLESTIVNVQCEK------KVRILRPGGLEIETLKRAIS----VELEYCVDETSTPQ-SP 223 G+EST+ + + + R G + L+RA++ EL V + P+ +P Sbjct: 178 GIESTVCAIAPAPGRDDAVVLTVYRRGAVAATALERAVADEPDAELRAAVAKLVVPECAP 237 Query: 224 GMLKSHYAPRSQVRLRAIHVNPR------------EALIRFGNVPIKNIENAIISLNLSK 271 G L +HYAP+ L ++ ++ FG + A+ +LS Sbjct: 238 GQLLTHYAPKIPAALVSLVAEAGADDAKSDAYVAQCVVVDFGGRLAALEDVALAYRDLSA 297 Query: 272 TGKLKEAAFNLFNYMKIADD-SGASSIAFSSIPNH----GLGIAINNRLERAAAP 321 G AA LF ++ A+D A ++ + + GL + +R+ RA + Sbjct: 298 AGDAAAAAAALFETLRWAEDVPKAKNVFIADLQAEKASPGLIAGVADRVYRATSG 352 >gi|95929617|ref|ZP_01312359.1| Sua5/YciO/YrdC/YwlC [Desulfuromonas acetoxidans DSM 684] gi|95134314|gb|EAT15971.1| Sua5/YciO/YrdC/YwlC [Desulfuromonas acetoxidans DSM 684] Length = 204 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 53/195 (27%), Positives = 98/195 (50%), Gaps = 6/195 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + E L IA PT+T+YG+ D N I+++Y++K+R P SD+S + Sbjct: 15 IDQVVECLRRDGVIAYPTDTIYGVGCDIFNKKGIKKIYQLKRRDVKKPFSFICSDLSEIS 74 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 ++A V ++ + K PGP T VLD ++ + L +T R+P T +++ Sbjct: 75 RYAHVSNMAFKIMKRHLPGPYTFVLD--ASRVVPDLVMTKQRTVGIRMPDNAITLEIVRQ 132 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 GHPL SAN SG + ++ K + +++DGG G ST+++++ ++ + Sbjct: 133 LGHPLVTTSANISGDETY-QDPSLIHDDWGKHLDMVVDGGR-LYGDPSTVISLRNDQ-IE 189 Query: 191 ILRPGGLEIETLKRA 205 +LR G + + + Sbjct: 190 VLRQGCGPTDWIHQL 204 >gi|57234410|ref|YP_181562.1| Sua5/YciO/YrdC/YwlC family protein [Dehalococcoides ethenogenes 195] gi|57224858|gb|AAW39915.1| Sua5/YciO/YrdC/YwlC family protein [Dehalococcoides ethenogenes 195] Length = 213 Score = 195 bits (496), Expect = 8e-48, Method: Composition-based stats. Identities = 62/198 (31%), Positives = 98/198 (49%), Gaps = 6/198 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A L G + PT+TVY + + N A+RR+++IK R L + DIS Sbjct: 11 ESQIDQAVSILKRGGVVVFPTDTVYAVGALASNTQAVRRVFDIKGRANTKGLPALIGDIS 70 Query: 69 MVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KK 126 + + A V PL+ LAK +WPG LTLVL T +I T +T R+P + Sbjct: 71 QINQVAKVFPPLASKLAKEYWPGGLTLVLP--KTDNIPLELTGGNETVAIRIPNQPAVIE 128 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 +++ G P+ SAN SG S N + + I+DGG G+ESTI+ V + Sbjct: 129 MLKRVGEPVTGTSANLSGCKSSLNAAEA-EKQLGDRVDFILDGGQVSGGVESTIIAVNPD 187 Query: 187 KKVRILRPGGLEIETLKR 204 ++I+R G ++ + Sbjct: 188 G-LKIIRQGAIKESDILE 204 >gi|225022788|ref|ZP_03711980.1| hypothetical protein CORMATOL_02833 [Corynebacterium matruchotii ATCC 33806] gi|224944395|gb|EEG25604.1| hypothetical protein CORMATOL_02833 [Corynebacterium matruchotii ATCC 33806] Length = 227 Score = 195 bits (496), Expect = 1e-47, Method: Composition-based stats. Identities = 56/226 (24%), Positives = 100/226 (44%), Gaps = 10/226 (4%) Query: 2 QIMSITDSN-----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56 +I S TD+ ++ A + +G + +PT+T+YGL D+ + A+ RL K R Sbjct: 3 RIYSCTDTGEVRSLGIKAAVGAVKSGRLVVLPTDTLYGLGCDAFDNDAVARLLAAKDRGP 62 Query: 57 MNPLICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115 P+ V + L L + FWPG L++V+ + + T T Sbjct: 63 DMPVPVLVGSWDTARGLVHSYNDQLRTLIEAFWPGGLSIVVPQAPSLMWNLGDT--RGTV 120 Query: 116 CFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R+P + P+A+ SAN SGQ T + + ++ + +DGG + +G Sbjct: 121 MLRMPLHPVAIELLRETGPMAVSSANISGQPPATTAA-MAEEQLGDKVNVYLDGGETSVG 179 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQ 221 + S+I++V ++ R+LR G + + + V E TP+ Sbjct: 180 VASSIIDVSGDQP-RLLREGAIPATRIADVLGVAPETLTPAARTPE 224 >gi|305681802|ref|ZP_07404606.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium matruchotii ATCC 14266] gi|305658275|gb|EFM47778.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium matruchotii ATCC 14266] Length = 227 Score = 194 bits (495), Expect = 1e-47, Method: Composition-based stats. Identities = 56/226 (24%), Positives = 100/226 (44%), Gaps = 10/226 (4%) Query: 2 QIMSITDSN-----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56 +I S TD+ ++ A + +G + +PT+T+YGL D+ + A+ RL K R Sbjct: 3 RIYSCTDTGEIRSLGIKAAVGAVKSGRLVVLPTDTLYGLGCDAFDNDAVARLLAAKDRGP 62 Query: 57 MNPLICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115 P+ V + L L + FWPG L++V+ + + T T Sbjct: 63 DMPVPVLVGSWDTARGLVHSYNDQLRTLIEAFWPGGLSIVVPQAPSLMWNLGDT--RGTV 120 Query: 116 CFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R+P + P+A+ SAN SGQ T + + ++ + +DGG + +G Sbjct: 121 MLRMPLHPVAIELLRETGPMAVSSANISGQPPATTAA-MAEEQLGDKVNVYLDGGETSVG 179 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQ 221 + S+I++V ++ R+LR G + + + V E TP+ Sbjct: 180 VASSIIDVSGDQP-RLLREGAIPATRIADVLGVAPETLTPAARTPE 224 >gi|218516174|ref|ZP_03513014.1| probable translation factor protein [Rhizobium etli 8C-3] Length = 185 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 88/170 (51%), Positives = 109/170 (64%), Gaps = 1/170 (0%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 + AL A L G IA+PTETVYGLA D+ NP AI R+YE K RP NPLICH Sbjct: 17 IEADRQAALEAASTALADGFAIAMPTETVYGLAADATNPAAITRIYETKGRPRFNPLICH 76 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 ++D++M + HA+ DPLS LA+ FWPGPLTLVL L + IH L+TA L + RVP GF Sbjct: 77 MADLAMAEHHAAFDPLSRALAEAFWPGPLTLVLPLKPESPIHSLATAGLDSVGVRVPKGF 136 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173 LI +G PLA PSAN SG IS T+ H+ + + +IPLI+D G S Sbjct: 137 AGALIGAFGRPLAAPSANTSGAISATSAAHV-EADLGAKIPLILDAGPSA 185 >gi|108800849|ref|YP_641046.1| translation factor SUA5 [Mycobacterium sp. MCS] gi|119869989|ref|YP_939941.1| translation factor SUA5 [Mycobacterium sp. KMS] gi|126436447|ref|YP_001072138.1| translation factor SUA5 [Mycobacterium sp. JLS] gi|108771268|gb|ABG09990.1| translation factor SUA5 [Mycobacterium sp. MCS] gi|119696078|gb|ABL93151.1| translation factor SUA5 [Mycobacterium sp. KMS] gi|126236247|gb|ABN99647.1| translation factor SUA5 [Mycobacterium sp. JLS] Length = 218 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 54/218 (24%), Positives = 90/218 (41%), Gaps = 9/218 (4%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 Q+ TD + + A L G + +PT+TVYG+ D+ N A+ L K R Sbjct: 3 QLFDCTDPDNRATGIAAAVSALKDGGLVVLPTDTVYGIGADAFNNEAVAALLAAKGRGRD 62 Query: 58 NPLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 P+ V ++ V + L + FWPG L+LV+ + + T Sbjct: 63 MPVPVLVGSWHTIEGLVYTVPHTARELIRAFWPGALSLVVRQAPS--LPWDLGDAHGTVM 120 Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P + P+A+ SAN SG+ + + + + + +D G S+ Sbjct: 121 LRMPLHPVAIELLREVGPMAVSSANISGRPAAVSAADA-REQLGDLVDVYLDAGPSEQQA 179 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV 214 STIV++ RILR G + E + + V E + Sbjct: 180 ASTIVDLSGAHP-RILRTGPVTAEAVAEVLGVNTESLL 216 >gi|227548002|ref|ZP_03978051.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium lipophiloflavum DSM 44291] gi|227079908|gb|EEI17871.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium lipophiloflavum DSM 44291] Length = 219 Score = 193 bits (492), Expect = 3e-47, Method: Composition-based stats. Identities = 51/204 (25%), Positives = 92/204 (45%), Gaps = 5/204 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++ ++ A + + AG + +PT+TVYG+ D+ N A+ +L K+R P+ V S Sbjct: 15 TDGIKAAVDAIRAGQCVVMPTDTVYGIGCDAFNNDAVAKLLATKRRGPDMPVPVLVGSWS 74 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 V+ + L + FWPG L++V+ + + T T R+P Sbjct: 75 TVQGLVREFTDTAQTLVEAFWPGGLSIVVPEAPSLPWNLGDT--RGTVLLRMPNQPLAIE 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + P+ + SAN +G +P+ +DGG S +G STI+++ Sbjct: 133 LLREVGPMGVSSANLTGNEPPVTTSAA-RQQFGNAVPVYLDGGRSTVGEPSTIIDISGPS 191 Query: 188 KVRILRPGGLEIETLKRAISVELE 211 V ILR G + E + ++++ E Sbjct: 192 PV-ILRNGAISAERICEVLNLDPE 214 >gi|145295341|ref|YP_001138162.1| hypothetical protein cgR_1281 [Corynebacterium glutamicum R] gi|140845261|dbj|BAF54260.1| hypothetical protein [Corynebacterium glutamicum R] Length = 216 Score = 193 bits (492), Expect = 3e-47, Method: Composition-based stats. Identities = 55/215 (25%), Positives = 94/215 (43%), Gaps = 9/215 (4%) Query: 2 QIMSITDSNA----LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 +I D ++ L+ A + + AG + +PT+T+YGL D+ N A+ L K R Sbjct: 3 RIYDCADQDSRAAGLKAAVDAVKAGQLVVLPTDTLYGLGCDAFNNEAVANLLATKHRGPD 62 Query: 58 NPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 P+ V ++ S + L + FWPG L++++ + + T T Sbjct: 63 MPVPVLVGSWDTIQGLVHSYSAQAKALVEAFWPGGLSIIVPQAPSLPWNLGDT--RGTVM 120 Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P + P+A+ SAN SG + V + + + + +DGG IG Sbjct: 121 LRMPLHPVAIELLRQTGPMAVSSANISGHTPPSTVLEA-RQQLNQNVSVYLDGGECAIGK 179 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELE 211 STIV++ +ILR G + E + + V E Sbjct: 180 PSTIVDISGPAP-KILREGAISAERVGEVLGVSAE 213 >gi|25027862|ref|NP_737916.1| hypothetical protein CE1306 [Corynebacterium efficiens YS-314] gi|259506253|ref|ZP_05749155.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium efficiens YS-314] gi|23493145|dbj|BAC18116.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] gi|259166157|gb|EEW50711.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium efficiens YS-314] Length = 216 Score = 193 bits (491), Expect = 4e-47, Method: Composition-based stats. Identities = 50/215 (23%), Positives = 92/215 (42%), Gaps = 9/215 (4%) Query: 2 QIMSITDSNA----LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 ++ D + L+ A + + AG + +PT+T+YGL D+ N A+ L K R Sbjct: 3 RVYDCADPESRVAGLKAAVDAVKAGQLVVLPTDTLYGLGCDAFNNQAVANLLATKHRGPD 62 Query: 58 NPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 P+ V ++ + L + FWPG L++++ + + T T Sbjct: 63 MPVPVLVGSWDTIQGLVQHYSEQARTLVQAFWPGGLSIIVPQAPSLPWNLGDT--RGTVM 120 Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P + P+A+ SAN SG + V + + + + +DGG IG Sbjct: 121 LRMPLHPVAIELLRETGPMAVSSANISGHTPPSTVTEA-RQQLNQNVSVYLDGGECAIGK 179 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELE 211 S+I+++ ++LR G + E + + V E Sbjct: 180 PSSIIDISGPHP-KLLREGAISAERIGEVLGVTAE 213 >gi|221632454|ref|YP_002521675.1| Sua5/YciO/YrdC/YwlC family protein [Thermomicrobium roseum DSM 5159] gi|221156754|gb|ACM05881.1| Sua5/YciO/YrdC/YwlC family protein [Thermomicrobium roseum DSM 5159] Length = 209 Score = 192 bits (490), Expect = 5e-47, Method: Composition-based stats. Identities = 59/208 (28%), Positives = 100/208 (48%), Gaps = 6/208 (2%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+++ + ++ A + L G + PT+TVYG+ P A+ RLY K RP P+ Sbjct: 1 MKVLRADEPGSVEIAAQVLREGGLVVFPTDTVYGVGAVVDRPDAVARLYVAKGRPLDKPI 60 Query: 61 ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 ++D+ ++K A V P LA+ FWPG LT+V+ + R+ Sbjct: 61 PVLIADLDQLEKLAREVTPEVQLLAQHFWPGALTIVVPAQPW--LPREIVRETGAVGLRM 118 Query: 120 PCGFTKK-LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P +I G +A SANRSG+ V+ + + + + L IDGG + G+ S Sbjct: 119 PDHPVALGIISGAGGAVATTSANRSGEREACTVEEAIGA-LGDAVDLYIDGGRTPGGIPS 177 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAI 206 T+V + ++ +LR G L +E ++ + Sbjct: 178 TVVAFEGS-RLVVLRRGALPVEVIEEVL 204 >gi|77919164|ref|YP_356979.1| Sua5/YciO/YrdC/YwlC family protein [Pelobacter carbinolicus DSM 2380] gi|77545247|gb|ABA88809.1| translation factor SUA5 [Pelobacter carbinolicus DSM 2380] Length = 204 Score = 192 bits (489), Expect = 6e-47, Method: Composition-based stats. Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 10/208 (4%) Query: 3 IMSITDS----NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58 I++I + + E + G +A PT+T+YGL D N I+R+Y+IK+R Sbjct: 2 ILTINPETPQKRLISRVVECIKQGGIVAYPTDTIYGLGCDIFNRKGIKRIYQIKERVHRK 61 Query: 59 PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 P +D+S V +A V + + K + PGP T VL+ +T + L KT R Sbjct: 62 PFSFICADLSDVANYAQVSNFAFKIMKRYLPGPYTFVLE--ATRVVPDLLVTKQKTVGIR 119 Query: 119 VPCGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 +P ++ GHPL SAN SG+ ++ + K+I +++DGGI K G Sbjct: 120 IPSNPISLAIVRELGHPLVTTSANLSGEE-PCCDPSLIEEELGKQINMVVDGGIIK-GEA 177 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRA 205 ST++++ + + +LR G +I + + Sbjct: 178 STVISLIDDN-IEVLRQGAGDISWIHQL 204 >gi|38233637|ref|NP_939404.1| hypothetical protein DIP1043 [Corynebacterium diphtheriae NCTC 13129] gi|38199897|emb|CAE49563.1| Conserved hypothetical protein [Corynebacterium diphtheriae] Length = 216 Score = 192 bits (488), Expect = 7e-47, Method: Composition-based stats. Identities = 54/206 (26%), Positives = 94/206 (45%), Gaps = 5/206 (2%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 T L++A + G + IPT+T+YG+ D+ + TA+ +L E K R P+ V Sbjct: 12 TREAGLQQAISTVKDGRLVVIPTDTLYGIGCDAFDNTAVAKLLETKHRGPDMPVPVLVGS 71 Query: 67 ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125 + S L + FWPG L++V++ + + T T R+P Sbjct: 72 WDTARGLVHSYSDQLRTLIEAFWPGGLSIVVEQAPSLQWNLGDT--RGTVMLRMPLHPVA 129 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 + P+A+ SAN SGQ T + + + + +D G + +G STI+++ Sbjct: 130 IELLRETGPMAVSSANISGQTPATTAQEAQR-QLGDNVSVYLDAGETPVGTASTIIDLSG 188 Query: 186 EKKVRILRPGGLEIETLKRAISVELE 211 + RILR G + E + + V++E Sbjct: 189 DHP-RILREGAISAERVAEVLEVDVE 213 >gi|256833002|ref|YP_003161729.1| Sua5/YciO/YrdC/YwlC family protein [Jonesia denitrificans DSM 20603] gi|256686533|gb|ACV09426.1| Sua5/YciO/YrdC/YwlC family protein [Jonesia denitrificans DSM 20603] Length = 246 Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats. Identities = 63/219 (28%), Positives = 100/219 (45%), Gaps = 10/219 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 NAL +A L G + +PT+TVYG+ D+ NP+A+ L K R P V+ + Sbjct: 16 NALDEAINQLHRGAVVVLPTDTVYGIGADAFNPSAVNALLRAKGRGRHMPPPVLVASPAT 75 Query: 70 VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128 + A V + LA+ FWPG LTL+ + + T RVP T + Sbjct: 76 IDALATHVPEGARALAERFWPGGLTLICHAQPS--LAWDLGETQGTVALRVPDHPTALAL 133 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 PLA+ SANR+G + + + + + +D G G+ STIV+ E Sbjct: 134 LQRTGPLAVSSANRTGGEAALTAQQA-RDQLGDSVAVYLDAGEVPGGVASTIVDATTEN- 191 Query: 189 VRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQS 222 +R++R G + +E L+ + EL D ++T Q+ Sbjct: 192 LRLIRAGAVSLEELRAVTFVLDVGEELPDSPDVSATDQA 230 >gi|270308141|ref|YP_003330199.1| translation factor SUA5 [Dehalococcoides sp. VS] gi|270154033|gb|ACZ61871.1| translation factor SUA5 [Dehalococcoides sp. VS] Length = 213 Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats. Identities = 62/201 (30%), Positives = 97/201 (48%), Gaps = 6/201 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 N + A L G + PT+TVY + +RN A+ R+++IK R L + D+S Sbjct: 11 ENQITNAVRILKEGGVVIFPTDTVYAVGALARNTHAVNRVFDIKGRANTKGLPALIGDVS 70 Query: 69 MVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KK 126 + + A V L+ LA +WPG LTLVL T +I T +T R+P + Sbjct: 71 QINQVAKVFPELARKLAAEYWPGGLTLVLP--KTNNIPLELTGGNETVAIRIPNQPAVIE 128 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 +++ G P+ SAN SG S N S + + I+DGG G+ESTIV V Sbjct: 129 MLKRIGEPITGTSANLSGCKSSLNAAEA-RSQLGDRVDFILDGGQVSGGVESTIVAV-NN 186 Query: 187 KKVRILRPGGLEIETLKRAIS 207 +++I+R G ++ + + Sbjct: 187 NELKIIRQGAIKEADILKTAG 207 >gi|111225292|ref|YP_716086.1| putative translation factor [Frankia alni ACN14a] gi|111152824|emb|CAJ64568.1| Putative translation factor [Frankia alni ACN14a] Length = 216 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 54/218 (24%), Positives = 87/218 (39%), Gaps = 9/218 (4%) Query: 1 MQIMSITDS----NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56 MQ +D L A + G + +PT+T+YGL D+ + A+ L K R Sbjct: 1 MQRFDCSDEAERARGLDAAVAAVGRGGLVVLPTDTLYGLGADAFDRDAVAALLAAKGRGR 60 Query: 57 MNPLICHVSDISMVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115 P+ V + P L FWPG LTLV+ ++ + T Sbjct: 61 NMPVPVLVGSWRTLDGLIDRKTPQVKDLISAFWPGGLTLVVRHAAS--LRWDLGEGRGTV 118 Query: 116 CFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R+P + P+A+ SAN SGQ T + + + +DGG Sbjct: 119 AVRMPLHPVAIELLGRTGPMAVSSANISGQPPATTADEAV-DQLGGAAEVYLDGGPCPAA 177 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYC 213 + STIV+ E V ++R G + ++ L+ + + E Sbjct: 178 VPSTIVDCTGEVPV-VVRSGAVGLDALREVLPLVREPA 214 >gi|296268875|ref|YP_003651507.1| Sua5/YciO/YrdC/YwlC family protein [Thermobispora bispora DSM 43833] gi|296091662|gb|ADG87614.1| Sua5/YciO/YrdC/YwlC family protein [Thermobispora bispora DSM 43833] Length = 215 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 55/200 (27%), Positives = 86/200 (43%), Gaps = 5/200 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + L A + G + IPT+TVYG+ D+ N A+ L E K R P V +S Sbjct: 14 AAGLTDAASAVRRGELVVIPTDTVYGIGCDAFNTRAVAALLEAKGRGRDMPAPVLVGTVS 73 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 S+ L FWPGPLTL+ + + T R+P Sbjct: 74 AATALVQSLGTHGQDLIDAFWPGPLTLIF--RANPSLAWDLGDTKGTVAVRMPMHQVALD 131 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + P+A+ SANRSGQ T V+ + + + +DGG + STIV++ Sbjct: 132 LLRETGPMAVSSANRSGQPPATTVEEA-QEQLGDAVSVYLDGGPCTDNVPSTIVDLTTAV 190 Query: 188 KVRILRPGGLEIETLKRAIS 207 R+LR G + ++ ++ + Sbjct: 191 P-RLLRKGAIPVDKIRGVVG 209 >gi|312139169|ref|YP_004006505.1| hypothetical protein REQ_17520 [Rhodococcus equi 103S] gi|325673526|ref|ZP_08153217.1| Sua5/YciO/YrdC/YwlC family protein [Rhodococcus equi ATCC 33707] gi|311888508|emb|CBH47820.1| conserved hypothetical protein [Rhodococcus equi 103S] gi|325555547|gb|EGD25218.1| Sua5/YciO/YrdC/YwlC family protein [Rhodococcus equi ATCC 33707] Length = 219 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 56/210 (26%), Positives = 91/210 (43%), Gaps = 5/210 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 L A L AG + +PT+TVYGL D+ + A+ L K R P+ V + Sbjct: 14 EAGLTAAKNSLKAGRLVVLPTDTVYGLGADAFDGDAVASLLRAKGRGRDMPVPVLVGSWN 73 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 + SV P + L K FWPG L++V+ + + + T R+P Sbjct: 74 TIDGLVYSVRPQARELIKAFWPGGLSIVVQQAPS--LAWDLGDSRGTVMLRMPLHPVALE 131 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + P+A+ SAN SG+ T V + + +DGG + + STIV++ ++ Sbjct: 132 LLRDVGPMAVSSANISGRPPATTVDEA-RDQLGGAASVYLDGGPATHAVASTIVDLTGDE 190 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDET 217 +RILR G + + + V E + Sbjct: 191 -IRILREGAVPTADVAEVLGVTPESLLGGA 219 >gi|19552426|ref|NP_600428.1| putative translation factor (SUA5) [Corynebacterium glutamicum ATCC 13032] gi|62390090|ref|YP_225492.1| translation factor (SUA5) [Corynebacterium glutamicum ATCC 13032] gi|21323969|dbj|BAB98595.1| Putative translation factor (SUA5) [Corynebacterium glutamicum ATCC 13032] gi|41325426|emb|CAF19906.1| Putative translation factor (SUA5) [Corynebacterium glutamicum ATCC 13032] Length = 216 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 54/215 (25%), Positives = 93/215 (43%), Gaps = 9/215 (4%) Query: 2 QIMSITDSNA----LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 +I D ++ L+ A + + AG + +PT+T+YGL D+ N A+ L K R Sbjct: 3 RIYDCADQDSRAAGLKAAVDAVKAGQLVVLPTDTLYGLGCDAFNNEAVANLLATKHRGPD 62 Query: 58 NPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 P+ V ++ S + L + FWPG L++++ + + T T Sbjct: 63 MPVPVLVGSWDTIQGLVHSYSAQAKALVEAFWPGGLSIIVPQAPSLPWNLGDT--RGTVM 120 Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P + P+A+ SAN SG T V + + + + +DGG + Sbjct: 121 LRMPLHPVAIELLRQTGPMAVSSANISGHTPPTTVLEA-RQQLNQNVAVYLDGGECALAT 179 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELE 211 STIV++ +ILR G + E + + V E Sbjct: 180 PSTIVDISGPAP-KILREGAISAERVGEVLGVSAE 213 >gi|306835873|ref|ZP_07468868.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium accolens ATCC 49726] gi|304568238|gb|EFM43808.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium accolens ATCC 49726] Length = 222 Score = 190 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 52/208 (25%), Positives = 92/208 (44%), Gaps = 5/208 (2%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 + A + +G + +PT+T+YGL D+ + A+ L K+R P+ V Sbjct: 11 DTEREEGVSIATKAAKSGRLVVMPTDTLYGLGCDAFDNDAVANLLATKQRGPDMPVPVLV 70 Query: 65 SDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 + V+ AS + L + FWPG L++V+ + + T T R+P Sbjct: 71 GSWNTVRGLVASYPDSTRDLVEAFWPGGLSIVVPQAPSLPWNLGDT--RGTVMLRMPLHP 128 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + P+A+ SAN SG T + + + K + + +DGG + IG STI+++ Sbjct: 129 IAIELLREVGPMAVSSANISGHQPPTTAQ-MAKDQLGKAVTVYLDGGETDIGKPSTIIDL 187 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELE 211 + +LR G L E + + V + Sbjct: 188 SGDHPY-LLREGALSAEEIGEVLGVSAD 214 >gi|117925136|ref|YP_865753.1| translation factor SUA5 [Magnetococcus sp. MC-1] gi|117608892|gb|ABK44347.1| translation factor SUA5 [Magnetococcus sp. MC-1] Length = 206 Score = 190 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 89/206 (43%), Gaps = 9/206 (4%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 Q I N LR+A + L G I PT+T YGL N + R+ IK+ Sbjct: 3 QYFKIHPENPQARLLRQAAQILQEGGVIVYPTDTTYGLGCVMSNRKGVERVVRIKQLSDT 62 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 + L +D+S + +A VD L K F PGP T VL+ ++ ++ KT Sbjct: 63 HQLTLLCADLSDIANYARVDNSCYRLLKRFLPGPYTFVLE--ASREVPKKILPRRKTIGL 120 Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 RVP L+E G PL S G I ++ + ++ LIIDGGI Sbjct: 121 RVPNHQICHALLELVGEPLLSTSVRLPGHEEIFTDPSLIRDQLEHQVDLIIDGGILPEH- 179 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETL 202 STI+++ + +LR G + + Sbjct: 180 PSTIIDMTSGEP-ELLREGAGDSAAI 204 >gi|169628535|ref|YP_001702184.1| hypothetical protein MAB_1444 [Mycobacterium abscessus ATCC 19977] gi|169240502|emb|CAM61530.1| Conserved hypothetical protein (Sua5/YciO/YRDC/ YwlC family protein?) [Mycobacterium abscessus] Length = 226 Score = 190 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 50/207 (24%), Positives = 92/207 (44%), Gaps = 5/207 (2%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 + T + + A L AG + +PT+TVYGL D+ + A+ L K R P+ V Sbjct: 10 AATRQSGIDAAVSALKAGELVVMPTDTVYGLGCDAFDSGAVTALLAAKGRGRDMPVGVLV 69 Query: 65 SDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 + +V + L + FWPGPL++++ + + + R+P Sbjct: 70 GSWHTIDGLVFAVPAAARELIEAFWPGPLSIIVRHAPS--LSWDLGDAQGSVMLRMPMHP 127 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + P+A+ SAN SG+ + + ++ + +DGG +++G STIV++ Sbjct: 128 VAIELLRAVGPMAVSSANVSGRPAALTAAEA-RGQLDDKVAVYLDGGQAELGAASTIVDL 186 Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL 210 V I+R G + E + I ++ Sbjct: 187 TGPAPV-IVREGPISREQIVEVIGGQV 212 >gi|311898378|dbj|BAJ30786.1| hypothetical protein KSE_50080 [Kitasatospora setae KM-6054] Length = 215 Score = 190 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 53/199 (26%), Positives = 87/199 (43%), Gaps = 5/199 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++ LR+A + G + +PT+TVYGLA D+ + A+ L K R P V + Sbjct: 14 ASGLREAASAIRRGELVVVPTDTVYGLAADAFSAEAVAGLLAAKGRGRNMPSPVLVGSPT 73 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 + + L FWPG LTLV + + T R+P Sbjct: 74 TLHGLVTDFSEQAWELVDAFWPGGLTLVARHQPS--LRWDLGETRGTVAVRMPLHPVVLE 131 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + PLA+ S N++G S + + + + + +DGG + G STIV+V + Sbjct: 132 LLNATGPLAVSSGNKTGGPSPSTCDEA-EAQLGDAVSIYLDGGTADYGTPSTIVDVTGKV 190 Query: 188 KVRILRPGGLEIETLKRAI 206 V +LR G + +E L+ + Sbjct: 191 PV-VLRAGAISVEQLREVV 208 >gi|300933614|ref|ZP_07148870.1| hypothetical protein CresD4_06047 [Corynebacterium resistens DSM 45100] Length = 219 Score = 190 bits (483), Expect = 3e-46, Method: Composition-based stats. Identities = 59/220 (26%), Positives = 100/220 (45%), Gaps = 9/220 (4%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 Q + TD N A+ A +D G + +PT+TVYG+ D+ + A+ L K R Sbjct: 3 QRVDATDPNDRERAIEIAASAVDGGRLVVLPTDTVYGIGCDAFDNQAVEALLRAKGRGPD 62 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLA-KLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 P+ V ++ ++ L + FWPG L++V+ + + T T Sbjct: 63 MPVPVLVGSWDTIQGLVRDYTYNMRLLVEAFWPGGLSMVVHQAPSLPWNLGDT--RGTVM 120 Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P + P+A+ SAN SGQ TNV+ + + ++ + I+GG + G+ Sbjct: 121 LRMPEHPIAIELLNQTGPMAVSSANISGQPPATNVQ-MAEDQLGADVAVYINGGNATHGV 179 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDE 216 STIV++ + RILR G + E + R + + E Sbjct: 180 ASTIVDLSSGRP-RILREGAITAEQIGRVLGMSPAELRGE 218 >gi|227832891|ref|YP_002834598.1| hypothetical protein cauri_1065 [Corynebacterium aurimucosum ATCC 700975] gi|262182620|ref|ZP_06042041.1| hypothetical protein CaurA7_01395 [Corynebacterium aurimucosum ATCC 700975] gi|227453907|gb|ACP32660.1| hypothetical protein cauri_1065 [Corynebacterium aurimucosum ATCC 700975] Length = 225 Score = 190 bits (483), Expect = 3e-46, Method: Composition-based stats. Identities = 59/215 (27%), Positives = 95/215 (44%), Gaps = 9/215 (4%) Query: 2 QIMSITD----SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 QI + D + A + +G + +PT+T+YGL D+ + A+ L K R Sbjct: 4 QIYNCADAAEREEGMALAVKAAKSGRLVVMPTDTLYGLGCDAFDNDAVASLLATKHRGPD 63 Query: 58 NPLICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 P+ V VK AS+D + L + FWPG L++V+ + + T T Sbjct: 64 MPVPVLVGSWDTVKGLVASLDDTAQTLIEAFWPGGLSIVVPQAPSLPWNLGDT--RGTVM 121 Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P + P+A+ SAN SGQ T + K + + +DGG +++G Sbjct: 122 LRMPLHPIAIELLREVGPMAVSSANISGQTPPTTAIAA-KQQLGKAVTVYLDGGEAEVGK 180 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELE 211 STI+++ +LR G L E + I V E Sbjct: 181 PSTIIDLSGPHPY-LLREGALSAEQIGEVIGVSAE 214 >gi|227501696|ref|ZP_03931745.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium accolens ATCC 49725] gi|227077721|gb|EEI15684.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium accolens ATCC 49725] Length = 222 Score = 190 bits (483), Expect = 3e-46, Method: Composition-based stats. Identities = 52/208 (25%), Positives = 92/208 (44%), Gaps = 5/208 (2%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 + A + +G + +PT+T+YGL D+ + A+ L K+R P+ V Sbjct: 11 DAEREEGVSIATKAAKSGRLVVMPTDTLYGLGCDAFDNDAVANLLATKQRGPDMPVPVLV 70 Query: 65 SDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 + V+ AS + L + FWPG L++V+ + + T T R+P Sbjct: 71 GSWNTVRGLVASYPDSTRDLVEAFWPGGLSIVVPQAPSLPWNLGDT--RGTVMLRMPLHP 128 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + P+A+ SAN SG T + + + K + + +DGG + IG STI+++ Sbjct: 129 IAIELLREVGPMAVSSANISGHQPPTTAQ-MAKDQLGKAVTVYLDGGETDIGKPSTIIDL 187 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELE 211 + +LR G L E + + V + Sbjct: 188 SGDHPY-LLREGALSAEEIGEVLGVSAD 214 >gi|254251532|ref|ZP_04944850.1| Sua5/YciO/YrdC/YwlC [Burkholderia dolosa AUO158] gi|124894141|gb|EAY68021.1| Sua5/YciO/YrdC/YwlC [Burkholderia dolosa AUO158] Length = 281 Score = 189 bits (482), Expect = 4e-46, Method: Composition-based stats. Identities = 68/280 (24%), Positives = 115/280 (41%), Gaps = 24/280 (8%) Query: 60 LICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 +I H+ A+ P + L FWPGPLTL+L I + + R Sbjct: 1 MIVHLPPGGDPAYWAADLPADARKLIDAFWPGPLTLILKRHP--RIPDAVSGGQDSVGLR 58 Query: 119 VPCG-FTKKLIETY------GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171 P + L+ + +A PSANR G +S T +H+ + ++DGG Sbjct: 59 CPSHAVAQALLAAFSARRGGHGGVAAPSANRFGHVSPTTAQHVRDEF--GDTVHVLDGGP 116 Query: 172 SKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHY 230 S++G+ESTIV++ +LRPG + + + + + + P++ G LK+HY Sbjct: 117 SEVGIESTIVDLSRGFPA-LLRPGHVSPQQIADVLGRAPRLPDGSDATAPRASGTLKAHY 175 Query: 231 APRSQV----------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAF 280 APR+ + L A + + A ++ A Sbjct: 176 APRTPLALLPFDALEPLLAAAQADGERVALVARASRAGRWAQADGVHFVAAPEDPHAYAR 235 Query: 281 NLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 +L+ ++ D + + I +P IA+N+RL RAAA Sbjct: 236 DLYGMLRALDRAQVARILVEKLPETIDWIAVNDRLGRAAA 275 >gi|255324518|ref|ZP_05365635.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium tuberculostearicum SK141] gi|255298424|gb|EET77724.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium tuberculostearicum SK141] Length = 222 Score = 189 bits (482), Expect = 4e-46, Method: Composition-based stats. Identities = 53/206 (25%), Positives = 91/206 (44%), Gaps = 5/206 (2%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 + A + +G + +PT+T+YGL D+ + A+ L K+R P+ V Sbjct: 11 DAEREEGMNIAVKAAQSGRLVVMPTDTLYGLGCDAFDNDAVANLLATKQRGPDMPVPVLV 70 Query: 65 SDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 V+ AS + L + FWPG L++V+ + + T T R+P Sbjct: 71 GSWDTVRGLVASYTDTARDLVEAFWPGGLSIVVPQAPSLPWNLGDT--RGTVMLRMPLHP 128 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + P+A+ SAN SG T + + K + + +DGG + +G STI+++ Sbjct: 129 IAIELLREVGPMAVSSANISGHQPPTTAL-MAKQQLGKAVTVYLDGGETAVGKPSTIIDL 187 Query: 184 QCEKKVRILRPGGLEIETLKRAISVE 209 E+ +LR G L E + I V+ Sbjct: 188 SGERPY-LLREGALSAEEIGEVIGVD 212 >gi|297569512|ref|YP_003690856.1| Sua5/YciO/YrdC/YwlC family protein [Desulfurivibrio alkaliphilus AHT2] gi|296925427|gb|ADH86237.1| Sua5/YciO/YrdC/YwlC family protein [Desulfurivibrio alkaliphilus AHT2] Length = 205 Score = 189 bits (481), Expect = 5e-46, Method: Composition-based stats. Identities = 54/196 (27%), Positives = 91/196 (46%), Gaps = 5/196 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++ E L G I PT+TVYG+ D N A++R+Y++K+RP P +D+ Sbjct: 12 PRLIKQVVEALRQGAVICYPTDTVYGIGCDIFNQKAVKRIYQLKQRPLARPFSFICADLK 71 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 V +A V + + PGP T VL +T + + KT R+P +L Sbjct: 72 DVSTYAHVSNTGYRVLRKSLPGPYTFVLP--ATKLVPKIMMTKQKTVGIRMPDHRICMEL 129 Query: 128 IETYGHPLAIPSANRSG-QISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 + G+P+ SA + + K++ LIID G ST+V+++ + Sbjct: 130 VTGLGNPILTTSAAPDDPDARQLIHAYEVEERYGKQVDLIIDSGPLAHSSPSTVVSLEDD 189 Query: 187 KKVRILRPGGLEIETL 202 +++LRPG +E L Sbjct: 190 D-LQVLRPGKGSLEGL 204 >gi|94266543|ref|ZP_01290229.1| Sua5/YciO/YrdC/YwlC [delta proteobacterium MLMS-1] gi|93452818|gb|EAT03344.1| Sua5/YciO/YrdC/YwlC [delta proteobacterium MLMS-1] Length = 204 Score = 189 bits (481), Expect = 5e-46, Method: Composition-based stats. Identities = 54/204 (26%), Positives = 91/204 (44%), Gaps = 5/204 (2%) Query: 1 MQIMSITD-SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 M+I +++ E L G I PT+TVYG+ D N A++R+Y++K RP P Sbjct: 1 MEINPDNPQPRLIKRVVEALRQGAVICYPTDTVYGIGCDIFNQKAVKRIYQLKCRPLGQP 60 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 +D+ + +A V + + PGP T VL +T + + + KT RV Sbjct: 61 FSFICADLKEISNYAHVSNTGYRVMRKSLPGPYTFVLP--ATKLVPKIMMSKQKTVGIRV 118 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P +L+ G+P+ SA S + + + ID G + S Sbjct: 119 PDNRICLELVAGLGNPILTTSAAPDDPDSRQLLAFEVDERYGHLVDYTIDSGPLTVAQPS 178 Query: 179 TIVNVQCEKKVRILRPGGLEIETL 202 T+V++ + ++ +LRPG +E L Sbjct: 179 TVVSM-VDDELTVLRPGKGRLEDL 201 >gi|91202678|emb|CAJ72317.1| similar to YrdC protein [Candidatus Kuenenia stuttgartiensis] Length = 210 Score = 189 bits (481), Expect = 6e-46, Method: Composition-based stats. Identities = 69/212 (32%), Positives = 107/212 (50%), Gaps = 19/212 (8%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 QI+ + + + ++ A + L G +A PTETVYGL V NP AI RLYE KKRPA Sbjct: 10 QILDVRNQDLYWTSIEIAAKALRNGGIVAFPTETVYGLGVHKDNPEAIERLYEAKKRPAE 69 Query: 58 NPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 L ++DI V+ +A +V ++ L + FWPGPL ++ L +D C Sbjct: 70 KRLTLMIADIGEVELYAGAVSDVAKRLMESFWPGPLAIIFPLKDGSD-----------IC 118 Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R+P + LI T P+A SAN SG T+ + ++ EI I+DGG + Sbjct: 119 VRLPDNAIARDLIRTANIPVATTSANTSGHPPSTDASQV-TAYFKDEIDFILDGGPTPSH 177 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAIS 207 ST+V ++ + ++R G + T++ + Sbjct: 178 EPSTVVKIK-DGVCEVVRHGIIPETTIRNCLK 208 >gi|253581898|ref|ZP_04859122.1| SUA5 protein [Fusobacterium varium ATCC 27725] gi|251836247|gb|EES64784.1| SUA5 protein [Fusobacterium varium ATCC 27725] Length = 216 Score = 189 bits (480), Expect = 6e-46, Method: Composition-based stats. Identities = 68/213 (31%), Positives = 110/213 (51%), Gaps = 11/213 (5%) Query: 1 MQIMSITDSNA-LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 M + T NA K + L G I PT+TVYG+ + +I ++Y+ K+R +P Sbjct: 1 MDRIKYTSLNADYNKIGKLLKEGNLIIYPTDTVYGVGGIIESDESIAKIYKAKERSFKSP 60 Query: 60 LICHVSDISMVKKHASVDPLSL----HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115 LI VSD+S ++K A ++ + L K FWPG LT++L+ ++ + + KT Sbjct: 61 LIVLVSDVSKIEKIAYIEEKNREKIEKLIKEFWPGGLTIILN--KKDNVPDIMVSGGKTV 118 Query: 116 CFRVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174 R+P K+IE G L SAN SG+ + + LS + + +++DGG I Sbjct: 119 GVRMPNLDTALKIIEAAGGLLPTTSANISGETTPRSYDE-LSEEFKERVEILVDGGRCPI 177 Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAIS 207 G STI+++ K +ILR G + IE +++ I Sbjct: 178 GNASTIIDMS--DKPKILRTGAISIEDIEKIIG 208 >gi|311740612|ref|ZP_07714439.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium pseudogenitalium ATCC 33035] gi|311304132|gb|EFQ80208.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium pseudogenitalium ATCC 33035] Length = 223 Score = 189 bits (480), Expect = 6e-46, Method: Composition-based stats. Identities = 53/206 (25%), Positives = 90/206 (43%), Gaps = 5/206 (2%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 + A + +G + +PT+T+YGL D+ + A+ L K+R P+ V Sbjct: 12 DAEREEGMNIAVKAAQSGRLVVMPTDTLYGLGCDAFDNDAVANLLATKQRGPDMPVPVLV 71 Query: 65 SDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 V+ AS + L + FWPG L++V+ + + T T R+P Sbjct: 72 GSWDTVRGLVASYTDTARDLVEAFWPGGLSIVVPQAPSLPWNLGDT--RGTVMLRMPLHP 129 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + P+A+ SAN SG T + + K + + +DGG + +G STI+++ Sbjct: 130 IAIELLREVGPMAVSSANISGHQPPTTAL-MAKQQLGKAVTVYLDGGETAVGKPSTIIDL 188 Query: 184 QCEKKVRILRPGGLEIETLKRAISVE 209 E +LR G L E + I V+ Sbjct: 189 SGECPY-LLREGALSAEEIGEVIGVD 213 >gi|94266276|ref|ZP_01289981.1| Sua5/YciO/YrdC/YwlC [delta proteobacterium MLMS-1] gi|93453127|gb|EAT03598.1| Sua5/YciO/YrdC/YwlC [delta proteobacterium MLMS-1] Length = 206 Score = 188 bits (479), Expect = 8e-46, Method: Composition-based stats. Identities = 52/195 (26%), Positives = 88/195 (45%), Gaps = 4/195 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++ E L G I PT+TVYG+ D N A++R+Y++K RP P +D+ Sbjct: 12 PRLIKRVVEALRQGAVICYPTDTVYGIGCDIFNQKAVKRIYQLKCRPLGQPFSFICADLK 71 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A V + + PGP T VL +T + + + KT RVP +L Sbjct: 72 EISNYAHVSNTGYRVMRKSLPGPYTFVLP--ATKLVPKIMMSKQKTVGIRVPDNRICLEL 129 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G+P+ SA S + + + ID G + ST+V++ + Sbjct: 130 VAGLGNPILTTSAAPDDPDSRQLLAFEVDERYGHLVDYTIDSGPLTVAQPSTVVSM-VDD 188 Query: 188 KVRILRPGGLEIETL 202 ++ +LRPG +E L Sbjct: 189 ELTVLRPGKGRLEDL 203 >gi|111018482|ref|YP_701454.1| hypothetical protein RHA1_ro01481 [Rhodococcus jostii RHA1] gi|110818012|gb|ABG93296.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length = 218 Score = 188 bits (479), Expect = 9e-46, Method: Composition-based stats. Identities = 57/209 (27%), Positives = 92/209 (44%), Gaps = 5/209 (2%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 + + S + A L AG + +PT+T+YG+ D+ + A+ L K R P+ Sbjct: 9 LPDSRSAGMSAAKNALKAGRLVVLPTDTLYGIGADAFDSEAVAALLRAKGRGRDMPVPVL 68 Query: 64 VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 V + + SV P + L + FWPG L+LV++ + + T R+P Sbjct: 69 VGSWNTIDGLVYSVRPQTRDLIRAFWPGGLSLVVEQAPS--LAWDLGDTRGTVMLRMPLH 126 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 + PLA+ SAN SGQ T V+ + + +DGG ++ G STIV+ Sbjct: 127 PVALELLREVGPLAVSSANVSGQPPATTVEEA-REQLGGSASVYLDGGRAEQGQASTIVD 185 Query: 183 VQCEKKVRILRPGGLEIETLKRAISVELE 211 + RILR G + + + V E Sbjct: 186 LTGATP-RILREGAVPTGDVADVLGVTAE 213 >gi|309775205|ref|ZP_07670216.1| Sua5/YciO/YrdC/YwlC family protein [Erysipelotrichaceae bacterium 3_1_53] gi|308917024|gb|EFP62753.1| Sua5/YciO/YrdC/YwlC family protein [Erysipelotrichaceae bacterium 3_1_53] Length = 234 Score = 188 bits (479), Expect = 9e-46, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 105/207 (50%), Gaps = 7/207 (3%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ D +++ ++L G +A PT+TVYGL V N A++ L E K RP P+ Sbjct: 30 METRRF-DKKDVKEVAQYLKEGKVVAFPTDTVYGLGVIYENEEALQALKESKGRPENKPI 88 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 V+++ +++ A ++ + LAK F PG T++L T + T T R+P Sbjct: 89 PTMVANVEQMQQIAVMNEAACKLAKAFMPGAFTMILKKKET--LPAYVTNGFPTVGIRMP 146 Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 F +LI G PL + SANRSG+ + + +L + I I+ G + L ST Sbjct: 147 NDPFVLQLIAECGKPLLVTSANRSGEETGVRDEQVLK-QLDGRIDAIVLGE-ADGKLAST 204 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAI 206 IV++ ++ V ++R G + E +++ + Sbjct: 205 IVDMSTQEAV-LVREGPVTAEDIQKVL 230 >gi|167561724|ref|ZP_02354640.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia oklahomensis EO147] Length = 198 Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats. Identities = 64/194 (32%), Positives = 98/194 (50%), Gaps = 13/194 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A LDAG +A PTETVYGL D+++P A+ R+Y K RPA +P+I H++ S Sbjct: 10 AAQIDEAAALLDAGELVAFPTETVYGLGGDAQSPAAVARIYAAKGRPANHPVIVHLAPGS 69 Query: 69 MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 P + L FWPGPLTL+L + I + + R P + Sbjct: 70 DPGYWVDELPADAKKLIDAFWPGPLTLILKRAAH--IPDAVSGGQDSVGLRCPSHPVAQA 127 Query: 127 LIETYG------HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L+ + +A PSANR G +S T +H+ + ++DGG S +G+ESTI Sbjct: 128 LLRAFDARRGGHGGVAAPSANRFGHVSPTTAQHV-RDEFGDSV-HVLDGGASDVGIESTI 185 Query: 181 VNVQCEKKVRILRP 194 +++ +LRP Sbjct: 186 LDLSRGFPA-LLRP 198 >gi|227503860|ref|ZP_03933909.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium striatum ATCC 6940] gi|227199483|gb|EEI79531.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium striatum ATCC 6940] Length = 222 Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats. Identities = 55/204 (26%), Positives = 90/204 (44%), Gaps = 5/204 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + A + +G + +PT+T+YGL D+ + A+ L K R P+ V Sbjct: 15 EEGMALAVKAAKSGRLVVMPTDTLYGLGCDAFDNDAVASLLATKHRGPDMPVPVLVGSWD 74 Query: 69 MVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 ++ AS + L + FWPG L++V+ + + T T R+P Sbjct: 75 TIRGLVASYTDTARTLVEAFWPGGLSIVVPQAPSLPWNLGDT--RGTVMLRMPLHPIAIE 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + P+A+ SAN SGQ T + K + + +DGG + IG STI+++ E+ Sbjct: 133 LLREVGPMAVSSANISGQTPPTTALEA-KQQLGKAVTVYLDGGETAIGKPSTIIDLSGER 191 Query: 188 KVRILRPGGLEIETLKRAISVELE 211 +LR G L E + I V E Sbjct: 192 PY-LLREGALSAEEIAAVIGVTAE 214 >gi|85858566|ref|YP_460768.1| sua5/yciO/yrdC/ywlC family protein [Syntrophus aciditrophicus SB] gi|85721657|gb|ABC76600.1| sua5/yciO/yrdC/ywlC family protein [Syntrophus aciditrophicus SB] Length = 217 Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats. Identities = 62/201 (30%), Positives = 98/201 (48%), Gaps = 6/201 (2%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 + L+ E L G +A PTET YGL D+ N AI +++ IK R NP+ + D Sbjct: 15 EPALLQHVAENLRKGRVVAYPTETFYGLGADAGNERAIEKIFSIKGRQFNNPIPLIIGDR 74 Query: 68 SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + + + + L +FWPGPLTLV ++ ++ P TAN R+ + Sbjct: 75 DELDSLVTAIPEAAQRLIHVFWPGPLTLVF--RASKNVSPRLTANTGLIGIRISSHPIAR 132 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 L + G PL SAN SGQ T + ++ I I+DGG ++ ST+VN+ Sbjct: 133 SLARSLGAPLTATSANFSGQKESTTAHEVAR-TLGSLIDGIVDGGQTRGNKGSTVVNIAV 191 Query: 186 EKKVRILRPGGLEIETLKRAI 206 + + ILR G + +++A+ Sbjct: 192 DPPL-ILRVGVITEIEIRKAL 211 >gi|167585582|ref|ZP_02377970.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia ubonensis Bu] Length = 214 Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats. Identities = 60/194 (30%), Positives = 93/194 (47%), Gaps = 13/194 (6%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-VDPLS 80 G +A PTETVYGL D+ NP A+ R+Y K RPA +P+I H+ + + Sbjct: 24 GQLVAFPTETVYGLGGDAANPEAVARIYAAKGRPANHPVIVHLPPGGDPGYWVEALPDDA 83 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY------GH 133 L FWPGPLTL+L I + + R P + L++ + Sbjct: 84 RKLIDAFWPGPLTLILKRHP--RIPDAVSGGQDSVGLRCPSHPVAQALLDAFSARRGGHG 141 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 +A PSANR G +S T +H+ + ++DGG S++G+ESTI+++ +LR Sbjct: 142 GVAAPSANRFGHVSPTTAQHVRDEF--GDTVHVLDGGPSEVGIESTILDLSRGFPA-LLR 198 Query: 194 PGGLEIETLKRAIS 207 PG + + + Sbjct: 199 PGHVSPRQIADVLG 212 >gi|313899365|ref|ZP_07832876.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium sp. HGF2] gi|312955818|gb|EFR37475.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium sp. HGF2] Length = 214 Score = 187 bits (477), Expect = 1e-45, Method: Composition-based stats. Identities = 66/207 (31%), Positives = 105/207 (50%), Gaps = 7/207 (3%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ D +++ E L G +A PT+TV+GL V N A+R+L E K RP P+ Sbjct: 11 METRRF-DKKDVKEVAELLKNGQVVAFPTDTVFGLGVIYENEEALRKLKESKGRPENKPI 69 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 V+D+ +K A + ++ LA F PG T++L T + T T R+P Sbjct: 70 PTMVADVEQMKCIAQMPAEAVALADAFMPGAFTMILKKQET--LPDYVTNGFPTVGIRMP 127 Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 F +LI+ G PL + SANRSG+ + + +L + I I+ G +K L ST Sbjct: 128 DDPFVLRLIKECGKPLLVTSANRSGEETGVRDEQVL-EQLDGRIDAIVLGE-AKGKLAST 185 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAI 206 IV++ E+ RI+R G + + +K+ + Sbjct: 186 IVDMSEEEP-RIVREGPISADDIKKVL 211 >gi|86742399|ref|YP_482799.1| translation factor SUA5 [Frankia sp. CcI3] gi|86569261|gb|ABD13070.1| translation factor SUA5 [Frankia sp. CcI3] Length = 216 Score = 187 bits (477), Expect = 1e-45, Method: Composition-based stats. Identities = 54/213 (25%), Positives = 86/213 (40%), Gaps = 9/213 (4%) Query: 1 MQIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56 M+ +D L A + G + +PT+T+YGL D+ + A+ L K R Sbjct: 1 MERFDCSDERERARGLDAAVSTVARGGLVVLPTDTLYGLGADAFDRDAVASLLAAKGRGR 60 Query: 57 MNPLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115 P+ V + + P L FWPG LTLV + + + T Sbjct: 61 NMPVPVLVGSWRTLDGLIERMTPQVRELITAFWPGGLTLVARHTPS--LRWDLGESRGTV 118 Query: 116 CFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R+P + P+A+ SAN SGQ T + L + + +DGG Sbjct: 119 AVRMPLHPVAIELLGRTGPMAVSSANISGQPPATTIDEAL-HQLGGAADVYLDGGPCPAA 177 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISV 208 + STIV+ E V +LR G + + L+ + + Sbjct: 178 VPSTIVDCTGEVPV-VLRSGAIGLTALRAVLPL 209 >gi|257056937|ref|YP_003134769.1| translation factor SUA5 [Saccharomonospora viridis DSM 43017] gi|256586809|gb|ACU97942.1| translation factor SUA5 [Saccharomonospora viridis DSM 43017] Length = 216 Score = 187 bits (477), Expect = 1e-45, Method: Composition-based stats. Identities = 55/206 (26%), Positives = 98/206 (47%), Gaps = 5/206 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++ L+ A + +G + +PT+TVYG+ D+ + TA+R L + K R P+ V S Sbjct: 14 ADGLKAAISAVRSGRLVVLPTDTVYGIGADAFDATAVRALLQAKNRGPDMPVGVLVGSWS 73 Query: 69 MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 V + + L + FWPG L++V+ + +H T R+P Sbjct: 74 TVDGLVLGLSQEARTLIEAFWPGDLSIVVSHAPS--LHWNLGTTRGTVMLRMPLHPVALE 131 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + P+A+ SAN SGQ + ++ + + + + +DGG S + STIV++ EK Sbjct: 132 VLREVGPMAVSSANVSGQPPASTMQEA-KEQLGESVAVYLDGGPSGDPVPSTIVDLTGEK 190 Query: 188 KVRILRPGGLEIETLKRAISVELEYC 213 +LR G + E + A+ +E+ Sbjct: 191 P-SLLREGAVSAEAVSEALGMEIGRA 215 >gi|73748639|ref|YP_307878.1| putative translation factor Sua5 [Dehalococcoides sp. CBDB1] gi|289432664|ref|YP_003462537.1| Sua5/YciO/YrdC/YwlC family protein [Dehalococcoides sp. GT] gi|73660355|emb|CAI82962.1| putative translation factor Sua5 [Dehalococcoides sp. CBDB1] gi|288946384|gb|ADC74081.1| Sua5/YciO/YrdC/YwlC family protein [Dehalococcoides sp. GT] Length = 213 Score = 187 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 59/199 (29%), Positives = 97/199 (48%), Gaps = 6/199 (3%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 + +A + L G + PT+TVY + + N A+ R+++IK R L + DIS + Sbjct: 13 QINRAVQVLKNGGVVIFPTDTVYAVGALASNTHAVNRVFDIKGRTNTKGLPALIGDISQI 72 Query: 71 KKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLI 128 + A + PL+ LA +WPG LTLVL T +I T +T R+P +++ Sbjct: 73 HQVAKIFPPLARKLAAEYWPGGLTLVLP--KTDNIPLELTGGNETVAIRIPNQAAVIEML 130 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 + P+ SAN SG S N + + I+DGG G+ESTIV V ++ Sbjct: 131 KRVAEPVTGTSANLSGCKSSLNASEAKI-QLGDRVDFILDGGQVSGGVESTIVTVNNDE- 188 Query: 189 VRILRPGGLEIETLKRAIS 207 ++I+R G ++ + + Sbjct: 189 LKIIRQGAIKESDIMKTAG 207 >gi|297202392|ref|ZP_06919789.1| yrdC domain-containing protein [Streptomyces sviceus ATCC 29083] gi|197710087|gb|EDY54121.1| yrdC domain-containing protein [Streptomyces sviceus ATCC 29083] Length = 215 Score = 187 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 53/204 (25%), Positives = 88/204 (43%), Gaps = 6/204 (2%) Query: 5 SITD-SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 TD + LR+A + G + +PT+TVYG+ D+ + A+ L E K R P Sbjct: 9 DATDRTTGLREAASAVRRGELVVLPTDTVYGIGADAFSSEAVHDLLEAKGRGRNMPTPVL 68 Query: 64 VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 + + + L+ L FWPG LTLV + T T R+P Sbjct: 69 IGSPNTLHGLVTDFSELAWELVDAFWPGALTLVAKHQPSLQWDLGDT--RGTVAVRMPLH 126 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 + T P+A+ SAN +G S + + + +DGG + + S+IV+ Sbjct: 127 PVAIELLTEVGPMAVSSANLTGHPSPETC-DAAQEMLGDSVSVYLDGGPTPGNVPSSIVD 185 Query: 183 VQCEKKVRILRPGGLEIETLKRAI 206 V E + +LR G + + L++ + Sbjct: 186 VTREVPL-LLRAGAISADELRKVV 208 >gi|152965228|ref|YP_001361012.1| Sua5/YciO/YrdC/YwlC family protein [Kineococcus radiotolerans SRS30216] gi|151359745|gb|ABS02748.1| Sua5/YciO/YrdC/YwlC family protein [Kineococcus radiotolerans SRS30216] Length = 241 Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats. Identities = 65/222 (29%), Positives = 101/222 (45%), Gaps = 8/222 (3%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 + L A + G + +PT+TVYG+ D+ NP A++RL E K R P V Sbjct: 10 PVIRERGLSAAHNAVKRGEVVVLPTDTVYGIGADAFNPAAVKRLLEAKGRGRDMPPPVLV 69 Query: 65 SDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 + + AS P ++ L FWPG LT+V + T T R+P Sbjct: 70 PETRTIDGLASSIPFAVRELIDAFWPGALTIVCRAQPSLTWDLGETNG--TVALRMPLHP 127 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + P+A+ SAN SG+ + T V + + + + + +DGG S G STIV+ Sbjct: 128 VALELLRRTGPMAVSSANLSGRPAATVVGEAV-EQLGESVRVYLDGGPSTKGAPSTIVDA 186 Query: 184 QCEKKVRILRPGGLEIETLKRAIS---VELEYCVDETSTPQS 222 + +R+LR G + L+ A+ VELE E T ++ Sbjct: 187 -SDGPLRVLRVGAISEAELRAAVPAGWVELEEPAVEEPTAEA 227 >gi|237737623|ref|ZP_04568104.1| SUA5 protein [Fusobacterium mortiferum ATCC 9817] gi|229419503|gb|EEO34550.1| SUA5 protein [Fusobacterium mortiferum ATCC 9817] Length = 212 Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats. Identities = 67/211 (31%), Positives = 112/211 (53%), Gaps = 11/211 (5%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +I ++ + + L + + L AG I PT+TVYG+ + I+ +Y+ K+R +PLI Sbjct: 6 KIYNLQNIDFL-EIEKSLKAGELIIYPTDTVYGIGGVISSEETIKNIYKAKERSFKSPLI 64 Query: 62 CHVSDISMVKKHASVDPLSL----HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 VSD+ +++ A V+ + L FWPG LT++L I + TA+ T Sbjct: 65 VLVSDVKKIEEVAYVEEKNREAIEKLIAKFWPGGLTIIL--KKKEWIPNIMTADGDTVGV 122 Query: 118 RVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P +K+I+ G L SAN SG+ + LS + + + +I+DGG S +G Sbjct: 123 RMPALNIAQKIIKAAGGLLPTTSANISGEKTP-RAYDELSDTFKERVDIIVDGGKSPLGT 181 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAIS 207 ESTI+++ K +ILR G + IE +++ I Sbjct: 182 ESTIIDMT--DKPKILRLGAISIEDIEKVIG 210 >gi|269925890|ref|YP_003322513.1| Sua5/YciO/YrdC/YwlC family protein [Thermobaculum terrenum ATCC BAA-798] gi|269789550|gb|ACZ41691.1| Sua5/YciO/YrdC/YwlC family protein [Thermobaculum terrenum ATCC BAA-798] Length = 205 Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats. Identities = 69/209 (33%), Positives = 115/209 (55%), Gaps = 9/209 (4%) Query: 1 MQIMS-ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 M I I D A+R+A +F G IA PT+TVYG+ +P A+ ++Y K+RP P Sbjct: 1 MAIRKPIEDKEAVRQAIDFALKGELIAFPTDTVYGVG-SIVDPQAVSKIYRAKERPLDKP 59 Query: 60 LICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 + +SD S ++K+A +D +++ LA+ FWPG LTLV+ + D+ + T FR Sbjct: 60 IPILLSDDSYLEKYAKDIDAIAMELARTFWPGALTLVV--RAREDVAEAVGSKDGTVGFR 117 Query: 119 VPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 +P +++I G +A+ SAN SG+ + + + + +I+DGG +IG Sbjct: 118 IPDYEPAREIIRQCGGAMAVTSANISGERNPLTADDV-EHDLGDRVAIILDGGPCRIGKP 176 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAI 206 ST+V++ EK + I+R G L E ++ + Sbjct: 177 STVVDLSKEKPL-IVRKGAL-AEQIRAIL 203 >gi|226360605|ref|YP_002778383.1| hypothetical protein ROP_11910 [Rhodococcus opacus B4] gi|226239090|dbj|BAH49438.1| hypothetical protein [Rhodococcus opacus B4] Length = 218 Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats. Identities = 57/209 (27%), Positives = 92/209 (44%), Gaps = 5/209 (2%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 + + S L A L AG + +PT+T+YG+ D+ + A+ L K R P+ Sbjct: 9 LPDSRSAGLSAAKNALKAGRLVVLPTDTLYGIGADAFDSEAVAALLRAKGRGRDMPVPVL 68 Query: 64 VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 V + + SV P + L + FWPG L+LV++ + + T R+P Sbjct: 69 VGSWNTIDGLVYSVRPQARDLIRAFWPGGLSLVVEQAPS--LAWDLGDTRGTVMLRMPLH 126 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 + PLA+ SAN SG+ T V+ + + +DGG ++ G STIV+ Sbjct: 127 PVALELLREVGPLAVSSANVSGRPPATTVEEA-REQLGGSASVYLDGGRAEQGQASTIVD 185 Query: 183 VQCEKKVRILRPGGLEIETLKRAISVELE 211 + RILR G + + + V E Sbjct: 186 LTGAAP-RILRVGAVPTGDVADVLGVTAE 213 >gi|328885061|emb|CCA58300.1| YrdC or Sua5 family protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA [Streptomyces venezuelae ATCC 10712] Length = 215 Score = 186 bits (474), Expect = 3e-45, Method: Composition-based stats. Identities = 51/198 (25%), Positives = 84/198 (42%), Gaps = 5/198 (2%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 LR+A + G + +PT+TVYG+ D+ + A+ L K R P + + Sbjct: 15 TGLREAASAVRRGELVVLPTDTVYGIGADAFSSEAVADLLAAKGRGRNMPTPVLIGSPNT 74 Query: 70 VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128 + + L FWPG LTLV + T T R+P + Sbjct: 75 LHGLVTDFSEQAWELVDAFWPGALTLVAKHQPSLQWDLGDT--RGTVAIRMPLHPVAIEL 132 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 T P+A+ SAN +G S + + + + +DGG + + S+IV+V + Sbjct: 133 LTEVGPMAVSSANLTGHPSPEDC-DAAQQMLGDSVSVYLDGGPTPGIVPSSIVDVTGKVP 191 Query: 189 VRILRPGGLEIETLKRAI 206 V +LR G L E L++ + Sbjct: 192 V-LLRQGALSPEELRKVV 208 >gi|255038761|ref|YP_003089382.1| Sua5/YciO/YrdC/YwlC family protein [Dyadobacter fermentans DSM 18053] gi|254951517|gb|ACT96217.1| Sua5/YciO/YrdC/YwlC family protein [Dyadobacter fermentans DSM 18053] Length = 208 Score = 186 bits (474), Expect = 3e-45, Method: Composition-based stats. Identities = 52/191 (27%), Positives = 86/191 (45%), Gaps = 7/191 (3%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSD 66 D +R+ + L G + PT+TVYGL D N A+ ++ IK +P N D Sbjct: 14 DERRVRQVVDCLRNGGLVIYPTDTVYGLGCDIYNTRAVEKIARIKGIKPQKNDFSFICYD 73 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126 +S + A V + K PGP T +L+ +T+++ L N KT RVP + Sbjct: 74 LSHISDFARVGNTAFKTMKRVLPGPYTFILE--ATSNVPKLLNTNKKTVGIRVPDNLIPR 131 Query: 127 LI-ETYGHPLAIPSANRSGQIS-ITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 LI + G+P+ S +I + ++ ++ +++DGG + STIV Sbjct: 132 LIVKELGNPIVTTSIRDDDEIIEYSTDPELIFEKFQHQVDMVVDGGYGG-NVASTIVKAD 190 Query: 185 CEKKVRILRPG 195 + I+R G Sbjct: 191 GDD-FEIIREG 200 >gi|315443362|ref|YP_004076241.1| translation factor SUA5 [Mycobacterium sp. Spyr1] gi|315261665|gb|ADT98406.1| translation factor SUA5 [Mycobacterium sp. Spyr1] Length = 221 Score = 186 bits (474), Expect = 4e-45, Method: Composition-based stats. Identities = 50/211 (23%), Positives = 87/211 (41%), Gaps = 5/211 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + A L G + +PT+TVYG+ D+ + A+ L + K R P+ V Sbjct: 15 ATGIASAISALKEGRLVVMPTDTVYGIGADAFDGEAVAALLDAKGRGRDMPVPVLVGSWH 74 Query: 69 MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 ++ V + L + FWPG L+LV+ + T R+P Sbjct: 75 TIQGLVYTVPNSAKELIRAFWPGALSLVVHQAPSLQW--DLGDANGTVMLRMPLHPVAIE 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + P+A+ SAN SG + + + +DGG ++ STIV++ Sbjct: 133 LLREVGPMAVSSANISGSPPAVTAAQA-REQLGDRVEVYLDGGPAEQQAASTIVDLTGAH 191 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETS 218 R+LR G + +E + + VE + + T Sbjct: 192 P-RVLRQGPVTLEAIADVLGVEAQSLLAPTE 221 >gi|309812117|ref|ZP_07705875.1| Sua5/YciO/YrdC/YwlC family protein [Dermacoccus sp. Ellin185] gi|308433804|gb|EFP57678.1| Sua5/YciO/YrdC/YwlC family protein [Dermacoccus sp. Ellin185] Length = 305 Score = 186 bits (473), Expect = 4e-45, Method: Composition-based stats. Identities = 60/213 (28%), Positives = 90/213 (42%), Gaps = 7/213 (3%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 A+ A + G + +PT+TVYG+ D NP + L K R P V + + V Sbjct: 16 AIEAAHAAVGEGKLVVLPTDTVYGVGADPFNPDGVAALLAAKGRGRDKPPAVLVPNPATV 75 Query: 71 KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129 + A SV + L FWPG LTL+ + T T R+P + Sbjct: 76 EGLAMSVPSYARRLMDRFWPGGLTLIFRAQPSLMWDLGDTNG--TVGLRMPDHEIALELL 133 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 PLA+ SANR+GQ +T + + + + +DGG GL STI++ V Sbjct: 134 QATGPLAVSSANRTGQPPVTTITEAGFA-FGPAVEVYLDGGTCDDGLPSTILDCTKPDPV 192 Query: 190 RILRPGGLEIETLKRAISVELEYCVDETSTPQS 222 +LR G + L+ + +D T P S Sbjct: 193 -MLRRGTITPAQLREVLGPID--LLDSTGAPLS 222 >gi|145222897|ref|YP_001133575.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium gilvum PYR-GCK] gi|145215383|gb|ABP44787.1| translation factor SUA5 [Mycobacterium gilvum PYR-GCK] Length = 221 Score = 186 bits (473), Expect = 4e-45, Method: Composition-based stats. Identities = 50/211 (23%), Positives = 87/211 (41%), Gaps = 5/211 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + A L G + +PT+TVYG+ D+ + A+ L + K R P+ V Sbjct: 15 ATGIASAISALKEGRLVVMPTDTVYGIGADAFDGEAVAALLDAKGRGRDMPVPVLVGSWH 74 Query: 69 MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 + V + L + FWPG L+LV+ + T R+P Sbjct: 75 TISGLVYTVPNSAKELIRAFWPGALSLVVHQAPSLQW--DLGDANGTVMLRMPLHPVAIE 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + P+A+ SAN SG + + + + +DGG ++ STIV++ Sbjct: 133 LLREVGPMAVSSANISGSPAAVTAAQA-REQLGDRVEVYLDGGPAEQQAASTIVDLTGAH 191 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETS 218 R+LR G + +E + + VE + + T Sbjct: 192 P-RVLRQGPVTLEAIADVLGVEAQSLLAPTE 221 >gi|239928892|ref|ZP_04685845.1| hypothetical protein SghaA1_11775 [Streptomyces ghanaensis ATCC 14672] gi|291437219|ref|ZP_06576609.1| translation factor SUA5 [Streptomyces ghanaensis ATCC 14672] gi|291340114|gb|EFE67070.1| translation factor SUA5 [Streptomyces ghanaensis ATCC 14672] Length = 215 Score = 186 bits (473), Expect = 5e-45, Method: Composition-based stats. Identities = 53/204 (25%), Positives = 87/204 (42%), Gaps = 6/204 (2%) Query: 5 SITD-SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 TD + LR+A + G + +PT+TVYG+ D+ P A+ L K R P Sbjct: 9 DATDRTTGLREAASAIRRGELVVLPTDTVYGIGADAFTPDAVADLLAAKGRGRTMPTPVL 68 Query: 64 VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 + + + ++ L FWPG LTLV + T T R+P Sbjct: 69 IGSPNTLHGLVTDFSEMAWELVDAFWPGALTLVARHQPSLQWDLGDT--RGTVAVRMPLH 126 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 + T P+A+ SAN +G + N + + + +DGG + + S+IV+ Sbjct: 127 PVAIELLTDVGPMAVSSANLTGHPAPENC-DAAQEMLGDSVSVYLDGGPTPGNVPSSIVD 185 Query: 183 VQCEKKVRILRPGGLEIETLKRAI 206 V V +LR G + E L++ + Sbjct: 186 VTRPVPV-LLREGAISPEELRKVV 208 >gi|94969639|ref|YP_591687.1| translation factor SUA5 [Candidatus Koribacter versatilis Ellin345] gi|94551689|gb|ABF41613.1| translation factor SUA5 [Candidatus Koribacter versatilis Ellin345] Length = 215 Score = 186 bits (472), Expect = 5e-45, Method: Composition-based stats. Identities = 67/211 (31%), Positives = 107/211 (50%), Gaps = 10/211 (4%) Query: 2 QIMSIT----DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 +I+ I + + + L AG+ + +PT+T YGLA D N A+ R+YEIK R Sbjct: 4 EIIKINSAEPEQKLVAYVADQLKAGMVLGMPTDTFYGLAADPFNLRAVERIYEIKSRSRH 63 Query: 58 NPLICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 PL + + ++ A P S + LA+ FWPGPLT+++ + + +TAN Sbjct: 64 KPLSLMIESVDQAEELAQDLPSSFYLLARRFWPGPLTMII--RAHARLPLKATANSGNIA 121 Query: 117 FRVPCGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R+P +++ G P+ SAN SGQ T + L + + +PLIIDGG S Sbjct: 122 VRIPSAPIPLAVLKAAGLPITATSANLSGQAECTTAR-ALKQQMEERLPLIIDGGNSPRD 180 Query: 176 LESTIVNV-QCEKKVRILRPGGLEIETLKRA 205 + STIV++ + + RI+R G + E + Sbjct: 181 VHSTIVDLSSGDGQWRIIREGAVSQEQISEM 211 >gi|68536429|ref|YP_251134.1| hypothetical protein jk1344 [Corynebacterium jeikeium K411] gi|68264028|emb|CAI37516.1| conserved hypothetical protein [Corynebacterium jeikeium K411] Length = 219 Score = 186 bits (472), Expect = 5e-45, Method: Composition-based stats. Identities = 56/212 (26%), Positives = 94/212 (44%), Gaps = 9/212 (4%) Query: 2 QIMSITD----SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 + + TD AL A + G + +PT+TVYG+ D+ + A+ L K R Sbjct: 3 RTVDATDPQNREAALDTAANAVKGGRLVVLPTDTVYGIGCDAFDNEAVAALLRAKGRGPD 62 Query: 58 NPLICHVSDISMVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 P+ V + ++ + L + FWPG L++V+ + + T T Sbjct: 63 MPVPVLVPSWTTIQGLVREYTYNMRKLVEAFWPGGLSMVVHQAPSLPWNLGDT--RGTVM 120 Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P + P+A+ SAN SGQ TNV+ + + ++ IDGG + G+ Sbjct: 121 LRMPNQPIALELLERTGPMAVSSANISGQPPATNVQ-MAEDQLGADVTTYIDGGEAHHGV 179 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISV 208 STIV++ + RILR G E + + + Sbjct: 180 ASTIVDLSSGRP-RILREGAATTERVAEVLGM 210 >gi|20094073|ref|NP_613920.1| translation factor (SUA5) [Methanopyrus kandleri AV19] gi|19887062|gb|AAM01850.1| Translation factor (SUA5) [Methanopyrus kandleri AV19] Length = 212 Score = 186 bits (472), Expect = 5e-45, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 96/205 (46%), Gaps = 4/205 (1%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 ++ D +A++ L AG +AIP +TVY L+ D+ N A+RRLY K+RP P+ Sbjct: 4 VLEEEDPHAVKHVVRALRAGKLVAIPCDTVYSLSCDATNSEAVRRLYAAKERPKDKPVSV 63 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 V + P + PGP+T+V + P A +T R+P Sbjct: 64 AVHSPEKALELLEPVPRLEAALETLTPGPVTIVAPRRPGV-VAPEVAAGRRTLGVRIPDH 122 Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 F +++ +G P+ SAN SG+ + T+ + + + ++++G + G ST++ Sbjct: 123 PFFLRVVRRFGKPIVTTSANVSGRPAPTDPDEVF-EQLGDRLDILVEGE-CRFGEPSTVI 180 Query: 182 NVQCEKKVRILRPGGLEIETLKRAI 206 + E + ILR G + E + + Sbjct: 181 ELTPEGNIDILREGAMPKEEILETL 205 >gi|227487984|ref|ZP_03918300.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium glucuronolyticum ATCC 51867] gi|227092075|gb|EEI27387.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium glucuronolyticum ATCC 51867] Length = 212 Score = 186 bits (472), Expect = 6e-45, Method: Composition-based stats. Identities = 52/202 (25%), Positives = 93/202 (46%), Gaps = 5/202 (2%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 T L A + ++AG + IPT+TVYG+ ++ NP A+ +L + K R P+ V Sbjct: 12 TREVGLNSAADAVEAGRLVVIPTDTVYGIGCNAFNPEAVNKLLQAKHRGPDMPVPVLVGS 71 Query: 67 ISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125 V+ + ++ L + FWPG L++V+ + + T + R+P Sbjct: 72 WDTVRGLSRDYTRQMNVLIEAFWPGGLSIVVPQAPSLTWNLGDTNG--SVMLRMPLQKLA 129 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 + P+A+ SAN SGQ N + + + + ++GG ++IG STI+++ Sbjct: 130 IELLQKTGPMAVSSANISGQPPALNAREA-EEQLGNSVSVYLEGGQAEIGTPSTIIDLTQ 188 Query: 186 EKKVRILRPGGLEIETLKRAIS 207 ILR G + E + + Sbjct: 189 ATP-TILREGAIPSEKIFEVLK 209 >gi|297192051|ref|ZP_06909449.1| translation factor SUA5 [Streptomyces pristinaespiralis ATCC 25486] gi|197719499|gb|EDY63407.1| translation factor SUA5 [Streptomyces pristinaespiralis ATCC 25486] Length = 215 Score = 186 bits (472), Expect = 6e-45, Method: Composition-based stats. Identities = 53/204 (25%), Positives = 90/204 (44%), Gaps = 6/204 (2%) Query: 5 SITD-SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 TD + LR+A + G + +PT+TVYG+ D+ +P A+ L E K R P Sbjct: 9 DATDRTTGLREAASAVRRGELVVLPTDTVYGIGADAFSPEAVADLLEAKGRGRNMPTPVL 68 Query: 64 VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 + + + + L +WPG LTLV + + T T R+P Sbjct: 69 IGSPNTLHGLVTDFSEQAWELVDAYWPGALTLVTKHQPSLQWNLGDT--RGTVAIRMPLH 126 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 + T P+A+ SAN +G S + + + + +DGG + + S+IV+ Sbjct: 127 PVAIELLTEVGPMAVSSANLTGHPSPEDCDAAQG-MLGDSVSVYLDGGPTPGIVPSSIVD 185 Query: 183 VQCEKKVRILRPGGLEIETLKRAI 206 V + V +LR G L + L++ + Sbjct: 186 VTGKVPV-LLREGALSADELRKVV 208 >gi|147669398|ref|YP_001214216.1| translation factor SUA5 [Dehalococcoides sp. BAV1] gi|146270346|gb|ABQ17338.1| translation factor SUA5 [Dehalococcoides sp. BAV1] Length = 213 Score = 185 bits (471), Expect = 7e-45, Method: Composition-based stats. Identities = 60/199 (30%), Positives = 98/199 (49%), Gaps = 6/199 (3%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 + +A + L G + PT+TVY + +RN A+ R+++IK R L + DIS + Sbjct: 13 QINRAVQVLKNGGVVIFPTDTVYAVGALARNTHAVNRVFDIKGRANTKGLPALIGDISQI 72 Query: 71 KKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLI 128 + A + P L+ LA +WPG LTLVL T +I T +T R+P +++ Sbjct: 73 HQVAKIFPLLARKLAAEYWPGGLTLVLP--KTDNIPLELTGGNETVAIRIPNQAAVIEML 130 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 + P+ SAN SG S N + + I+DGG G+ESTIV V ++ Sbjct: 131 KRVAEPVTGTSANLSGCKSSLNASEAKI-QLGDRVDFILDGGQVSGGVESTIVAVNNDE- 188 Query: 189 VRILRPGGLEIETLKRAIS 207 ++I+R G ++ + + Sbjct: 189 LKIIRQGAIKESDILKTAG 207 >gi|120405291|ref|YP_955120.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium vanbaalenii PYR-1] gi|119958109|gb|ABM15114.1| translation factor SUA5 [Mycobacterium vanbaalenii PYR-1] Length = 220 Score = 185 bits (471), Expect = 7e-45, Method: Composition-based stats. Identities = 50/213 (23%), Positives = 87/213 (40%), Gaps = 9/213 (4%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 + TD + A L G + +PT+TVYG+ D+ + A+ L K R Sbjct: 3 ETFDCTDPEQRDTGIASAISALKGGRLVVMPTDTVYGIGADAFDGEAVAALLAAKGRGRN 62 Query: 58 NPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 P+ V ++ SV + L + FWPG L+LV+ + T Sbjct: 63 MPVPVLVGSWHTIQGLVYSVPNSAKELIRAFWPGALSLVVRQAPSLQW--DLGDANGTVM 120 Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P + P+A+ SAN SG+ + + + +DGG ++ Sbjct: 121 LRMPLHPVAIELLREVGPMAVSSANISGRPPAVTAAQA-REQLGDLVEVYLDGGPAEQQA 179 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVE 209 STIV++ R+LR G + ++ + + V+ Sbjct: 180 ASTIVDLTGAHP-RVLREGPVTLDAIADVLGVD 211 >gi|329939828|ref|ZP_08289129.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces griseoaurantiacus M045] gi|329301398|gb|EGG45293.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces griseoaurantiacus M045] Length = 215 Score = 185 bits (471), Expect = 7e-45, Method: Composition-based stats. Identities = 53/204 (25%), Positives = 88/204 (43%), Gaps = 6/204 (2%) Query: 5 SITD-SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 TD + LR+A + G + +PT+TVYG+ D+ + A+ L E K R P Sbjct: 9 DATDRATGLREAAAAVRRGELVVLPTDTVYGIGADAFSAEAVGDLLEAKGRGRNMPTPVL 68 Query: 64 VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 + + + ++ L FWPG LTLV + T T R+P Sbjct: 69 IGSPNTLHGLVTDFSEMAWELVDAFWPGALTLVAKHQPSLQWDLGET--RGTVAVRMPLH 126 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 + T P+A+ SAN +G + + + + + +DGG + + S+IV+ Sbjct: 127 PVAIELLTEFGPMAVSSANLTGHPAPEDC-DAAQEMLGDSVSVYLDGGPTPGNVPSSIVD 185 Query: 183 VQCEKKVRILRPGGLEIETLKRAI 206 V V +LR G L E L++ + Sbjct: 186 VTGRVPV-LLRQGALSPEELRKVV 208 >gi|325002822|ref|ZP_08123934.1| translation factor SUA5 [Pseudonocardia sp. P1] Length = 220 Score = 185 bits (471), Expect = 7e-45, Method: Composition-based stats. Identities = 55/206 (26%), Positives = 97/206 (47%), Gaps = 5/206 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 L A + +G + +PT+TVYG+ D+ + TA+R L K+R P+ V + Sbjct: 19 QRGLTAAARAVRSGELVVLPTDTVYGIGCDAFSGTAVRNLLSAKRRGPDMPVGVLVGSWT 78 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 + SV P + L + FWPG ++LVL+ + + + T R+P Sbjct: 79 TIDGLVTSVPPSARALIEAFWPGEVSLVLEHAPS--LAWDLGSTRGTVMLRMPLHPVALE 136 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + P+A+ SAN SG + V ++ + + + +DGG S + STIV++ + Sbjct: 137 LLREVGPMAVSSANTSGNPPASTVTEAIT-QLASSVQVYLDGGPSGDPVASTIVDLTGVR 195 Query: 188 KVRILRPGGLEIETLKRAISVELEYC 213 R+LR GG+ E + + E++ Sbjct: 196 P-RLLREGGVSAEQVAEVVGQEVDRP 220 >gi|197117703|ref|YP_002138130.1| tRNA (N6-threonylcarbamoyl-A37) modification ATPase [Geobacter bemidjiensis Bem] gi|197087063|gb|ACH38334.1| tRNA (N6-threonylcarbamoyl-A37) modification ATPase [Geobacter bemidjiensis Bem] Length = 202 Score = 185 bits (470), Expect = 9e-45, Method: Composition-based stats. Identities = 53/188 (28%), Positives = 90/188 (47%), Gaps = 6/188 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + K E L G +A PT+T YG+ + I R+Y++K+R P SDIS Sbjct: 12 PRLVAKVVEILKNGGVVAYPTDTTYGIGCSIFSKKGIERIYQVKQRDRKKPFSFICSDIS 71 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 + ++A V + + PGP T VL+ + + + L T +T R+P + Sbjct: 72 EISRYARVSNYAFKQLRRLLPGPYTFVLE--ANSVVPDLVTTKQRTVGIRMPDNNICLAI 129 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ GHP+ SAN SG+ I N + + K + L++DGG + S++V++ + Sbjct: 130 VKELGHPIVTTSANLSGEDPIGNPWQV-EHELGKLLDLVVDGGDLSADV-SSVVSLIGDS 187 Query: 188 KVRILRPG 195 +LR G Sbjct: 188 P-ELLRKG 194 >gi|297559306|ref|YP_003678280.1| Sua5/YciO/YrdC/YwlC family protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843754|gb|ADH65774.1| Sua5/YciO/YrdC/YwlC family protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 261 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 60/224 (26%), Positives = 96/224 (42%), Gaps = 8/224 (3%) Query: 2 QIMSITDS----NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 +I D + + A + G + +PT+TVYG+ D+ +PTA+ RL K R Sbjct: 3 RIYDCADETARKDGIADAASAVRRGDLVVLPTDTVYGIGTDAFSPTAVARLLATKGRGRE 62 Query: 58 NPLICHVSDISMVKKHASVD-PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 P V + L + FWPGPLTLV +T + T Sbjct: 63 MPPPVLVGSMRAANALVDDLGNHGRDLMEEFWPGPLTLVCT--ATPSLSWDLGDTKGTVG 120 Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P + P+A+ SAN+SGQ S T V+ + +++ + +DGG ++ + Sbjct: 121 VRMPMDPVALDLLKEVGPMAVSSANKSGQPSATRVEEAIEQLGDEDVAVYLDGGETESRV 180 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTP 220 STIV++ R+LR G + IE L+ + P Sbjct: 181 SSTIVDLTYAVP-RVLRAGAISIEQLRAVCGTVIGELRKGPRKP 223 >gi|148546653|ref|YP_001266755.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas putida F1] gi|148510711|gb|ABQ77571.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas putida F1] Length = 221 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 47/200 (23%), Positives = 82/200 (41%), Gaps = 8/200 (4%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 Q I N +++A E + G + PT++ Y L + +AI R+ ++ Sbjct: 15 QFFQIHPENPQARLIKQAVEIIRKGGVVVYPTDSAYALGCQIGDKSAIERVRRLRGLDKT 74 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 + D+S + +A VD + L K PGP T +L+ L +T Sbjct: 75 HNFTLMCCDMSQLGLYAKVDTGTFRLLKAHVPGPYTFILNGTREVP-RLLLHDKRRTIGL 133 Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 RVP T L+ G PL S G + + + ++ L+IDGG + Sbjct: 134 RVPDHAITLALLAELGEPLMSVSLILPGDSEPMTDPYEIRERLEHQVDLVIDGGFGDL-K 192 Query: 177 ESTIVNVQCEKKVRILRPGG 196 STI+++ ++ ++R G Sbjct: 193 ASTIIDLSGDEP-ELIREGC 211 >gi|307327908|ref|ZP_07607090.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces violaceusniger Tu 4113] gi|306886426|gb|EFN17430.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces violaceusniger Tu 4113] Length = 215 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 56/204 (27%), Positives = 86/204 (42%), Gaps = 6/204 (2%) Query: 5 SITD-SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 TD LR+A + G + +PT+TVYG+ D+ N A+ L E K R P Sbjct: 9 DATDRKTGLREAASAVRRGELVVLPTDTVYGIGADAFNAEAVGDLLEAKGRGRNMPTPVL 68 Query: 64 VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 V + + ++ L FWPG LTLV + T T R+P Sbjct: 69 VGSPNTLHGLVTDFSEMAWELVDAFWPGALTLVARHQPSLTWDLGET--RGTVAVRMPLH 126 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 + T P+A+ SAN +G S + + + +DGG + + S+IV+ Sbjct: 127 PVAIELLTDFGPMAVSSANLTGHPSP-QDCDAAQDMLGDSVSVYLDGGPTPAAVPSSIVD 185 Query: 183 VQCEKKVRILRPGGLEIETLKRAI 206 V + V +LR G L E L+ + Sbjct: 186 VTGKVPV-LLRAGALTAEQLREVV 208 >gi|170722951|ref|YP_001750639.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas putida W619] gi|169760954|gb|ACA74270.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas putida W619] Length = 221 Score = 184 bits (469), Expect = 1e-44, Method: Composition-based stats. Identities = 45/189 (23%), Positives = 77/189 (40%), Gaps = 4/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +R+A E + G + PT++ Y L + AI R+ ++ + D+S Sbjct: 26 PRLIRQAVEIIRKGGVVVYPTDSAYALGCQIGDKAAIERVRRLRGLDKTHNFTLMCCDMS 85 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD + L K PGP T +L+ L +T RVP T L Sbjct: 86 QLGLYAKVDTGTFRLLKAHVPGPYTFILNGTREVP-RLLLHEKRRTIGLRVPDHGITLAL 144 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL S G + + + + L+IDGG + STI+++ ++ Sbjct: 145 LAELGEPLMSVSLILPGDSEPMTDPYEIRERLEHHVDLVIDGGFGDL-KASTIIDLSGDE 203 Query: 188 KVRILRPGG 196 ++R G Sbjct: 204 P-EVIREGC 211 >gi|326382084|ref|ZP_08203777.1| hypothetical protein SCNU_04032 [Gordonia neofelifaecis NRRL B-59395] gi|326199510|gb|EGD56691.1| hypothetical protein SCNU_04032 [Gordonia neofelifaecis NRRL B-59395] Length = 219 Score = 184 bits (469), Expect = 1e-44, Method: Composition-based stats. Identities = 52/189 (27%), Positives = 85/189 (44%), Gaps = 5/189 (2%) Query: 24 PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLSLH 82 + +PT+TVYGL D+ + A+ L K R P+ V V SV P + Sbjct: 29 LVVMPTDTVYGLGCDAFDSEAVASLLAAKGRGRDMPVPVLVGSWHTVDGLVRSVSPQARE 88 Query: 83 LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANR 142 L + FWPG L+LV++ + T+ + R+P + P+A+ SAN Sbjct: 89 LVQAFWPGGLSLVVEQAPSLAWDLGDTSG--SVMIRMPLHPVAIELLREVGPMAVSSANI 146 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202 SG T + ++ + +DGG + + STIV++ + +ILR G + E L Sbjct: 147 SGHPPATTAPEA-RDQLQDKVSVYLDGGPADHAVASTIVDLTGPEP-KILREGAITAEHL 204 Query: 203 KRAISVELE 211 + V+ E Sbjct: 205 AEVLDVDAE 213 >gi|325958344|ref|YP_004289810.1| Sua5/YciO/YrdC/YwlC family protein [Methanobacterium sp. AL-21] gi|325329776|gb|ADZ08838.1| Sua5/YciO/YrdC/YwlC family protein [Methanobacterium sp. AL-21] Length = 204 Score = 184 bits (469), Expect = 1e-44, Method: Composition-based stats. Identities = 58/211 (27%), Positives = 105/211 (49%), Gaps = 12/211 (5%) Query: 1 MQIMSIT----DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56 M+I+ I D + + +A E+L G + PT+TVYG+A ++ N +A+ ++++ KKR Sbjct: 1 MKILKINNKNPDPDTITQAKEYLKQGKIVVYPTDTVYGIAANAYNESAVSKVFDTKKRLK 60 Query: 57 MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 + +++I + A +D + L + +PGP T+++ I PL T Sbjct: 61 TKAVSLCLAEIEAINDVAFMDNKTEILVEQLFPGPFTVIM--RKKEQISPLLTGGTNKIG 118 Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R+P ++ L + P+ SAN SG K ++ + + L++D G+ K G Sbjct: 119 IRIPDNKLSRDLASEF--PITSTSANISGLNVPETPKEVV-EQLGDSVDLVLDAGVCKYG 175 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAI 206 ST+V++ +K + ILR G ETL + Sbjct: 176 YHSTVVDMTGDKPI-ILRMGA-GYETLMNLL 204 >gi|302558379|ref|ZP_07310721.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces griseoflavus Tu4000] gi|302475997|gb|EFL39090.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces griseoflavus Tu4000] Length = 215 Score = 184 bits (469), Expect = 1e-44, Method: Composition-based stats. Identities = 53/204 (25%), Positives = 88/204 (43%), Gaps = 6/204 (2%) Query: 5 SITD-SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 TD + LR+A + G + +PT+TVYG+ D+ P A+ L E K R P Sbjct: 9 DATDRATGLREAASAVRRGELVVLPTDTVYGIGADAFTPDAVGDLLEAKGRGRNMPSPVL 68 Query: 64 VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 + + + ++ L FWPG LTLV + T T R+P Sbjct: 69 IGSPNTLHGLVTDFSEMAWELVDAFWPGALTLVARHQPSLQWDLGDT--RGTVAVRMPLH 126 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 + T P+A+ SAN +G + + + + + +DGG + + S+IV+ Sbjct: 127 PVAIELLTEVGPMAVSSANLTGHPAPEDC-DAAQEMLGDSVSVYLDGGPTPGNVPSSIVD 185 Query: 183 VQCEKKVRILRPGGLEIETLKRAI 206 V V +LR G + E L++ + Sbjct: 186 VTRPVPV-LLREGAISPEELRKVV 208 >gi|253701566|ref|YP_003022755.1| Sua5/YciO/YrdC/YwlC family protein [Geobacter sp. M21] gi|251776416|gb|ACT18997.1| Sua5/YciO/YrdC/YwlC family protein [Geobacter sp. M21] Length = 202 Score = 184 bits (469), Expect = 1e-44, Method: Composition-based stats. Identities = 53/188 (28%), Positives = 90/188 (47%), Gaps = 6/188 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + K E L G +A PT+T YG+ + I R+Y++K+R P SDIS Sbjct: 12 PRLVAKVVEVLKNGGVVAYPTDTTYGIGCSIFSKKGIERIYQVKQRDRKKPFSFICSDIS 71 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 + ++A V + + PGP T VL+ + + + L T +T R+P + Sbjct: 72 EISRYARVSNYAFKQLRRLLPGPYTFVLE--ANSVVPDLVTTKQRTVGIRMPDNNICLAI 129 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ GHP+ SAN SG+ I N + + K + L++DGG + S++V++ + Sbjct: 130 VKELGHPIVTTSANLSGEDPIGNPWQV-EHELGKLLDLVVDGGDLSADV-SSVVSLIGDS 187 Query: 188 KVRILRPG 195 +LR G Sbjct: 188 P-ELLRKG 194 >gi|328952765|ref|YP_004370099.1| Sua5/YciO/YrdC/YwlC family protein [Desulfobacca acetoxidans DSM 11109] gi|328453089|gb|AEB08918.1| Sua5/YciO/YrdC/YwlC family protein [Desulfobacca acetoxidans DSM 11109] Length = 214 Score = 184 bits (469), Expect = 1e-44, Method: Composition-based stats. Identities = 70/203 (34%), Positives = 101/203 (49%), Gaps = 6/203 (2%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L A L G IA PTET Y LAVD+ +A+ RL ++KKRP L+ ++D+ Sbjct: 12 DDRILDPALPTLQEGGVIACPTETYYALAVDAFQESALHRLLQLKKRPRSKGLLVLLADL 71 Query: 68 SMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 M+ A V L+ L FWPGPLTL+L D+ T T RV + Sbjct: 72 QMLDLVAAEVPSLAQRLMAQFWPGPLTLILKARP--DLPKALTGGDNTIGVRVSSHPLAQ 129 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 L + YG P+ SAN SGQ + + + + +I LI+ GL STI+N+ C Sbjct: 130 HLPQMYGRPVTGTSANLSGQAPMISASQ-IEQELGAQIDLILKNSPCGGGLPSTILNITC 188 Query: 186 EKKVRILRPGGLEIETLKRAISV 208 + + ++R G + +E L+ I V Sbjct: 189 KPPL-LVRAGAVSLEHLEECIGV 210 >gi|297569316|ref|YP_003690660.1| Sua5/YciO/YrdC/YwlC family protein [Desulfurivibrio alkaliphilus AHT2] gi|296925231|gb|ADH86041.1| Sua5/YciO/YrdC/YwlC family protein [Desulfurivibrio alkaliphilus AHT2] Length = 221 Score = 184 bits (469), Expect = 1e-44, Method: Composition-based stats. Identities = 62/203 (30%), Positives = 96/203 (47%), Gaps = 6/203 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 L +A + G +A PTET YGLAVD N A+ RL+ +K+R P++C V D Sbjct: 13 PAELEQAAAIIRRGGIVAFPTETYYGLAVDPFNREALSRLFALKRRAPDKPILCLVPDRE 72 Query: 69 MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + A + P L + FWPGPLTL+ + T T R+ + Sbjct: 73 HLFSLADSIPPSYEPLMEAFWPGPLTLIFTAREEVPVS--LTGYSGTVGVRLSSHPVAAR 130 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L + YG + SAN SG + N + + + ++ I+DGG + G ST+V V+ E Sbjct: 131 LAQIYGGAITATSANFSGHPAAVNAAEV-GAQLGPDVDYILDGGETPGGAGSTLVGVENE 189 Query: 187 KKVRILRPGGLEIETLKRAISVE 209 + + + RPG + + L + E Sbjct: 190 Q-LVLRRPGVITRQELNDVLGPE 211 >gi|312194812|ref|YP_004014873.1| Sua5/YciO/YrdC/YwlC family protein [Frankia sp. EuI1c] gi|311226148|gb|ADP79003.1| Sua5/YciO/YrdC/YwlC family protein [Frankia sp. EuI1c] Length = 218 Score = 184 bits (469), Expect = 1e-44, Method: Composition-based stats. Identities = 54/213 (25%), Positives = 98/213 (46%), Gaps = 9/213 (4%) Query: 1 MQIMSITDSNA----LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56 M+ TD A L A + G + +PT+TVYGL D+ + +A+R L K R Sbjct: 1 MRRFDCTDPAARQAGLEAAASAVGRGDLVVLPTDTVYGLGADAFDASAVRALLATKNRGR 60 Query: 57 MNPLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115 P+ + + S V L + FWPG LT+++ + + + T Sbjct: 61 NMPVPVLIGSWRTLDGLVSHVSMPVRELTRAFWPGGLTVIVRQAPS--LRWDLGESRGTV 118 Query: 116 CFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R+P + P+A+ SAN SGQ + T + + + +++ + +D G + G Sbjct: 119 AVRMPLHPVAIDLLGRTGPMAVSSANLSGQPAATTADEAV-AQLGEQVDVYLDAGPATHG 177 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISV 208 + STIV+ + R++R G +++ TL+ + + Sbjct: 178 VASTIVDCTTDVP-RVVRLGAIDLPTLRSVLPL 209 >gi|322418699|ref|YP_004197922.1| Sua5/YciO/YrdC/YwlC family protein [Geobacter sp. M18] gi|320125086|gb|ADW12646.1| Sua5/YciO/YrdC/YwlC family protein [Geobacter sp. M18] Length = 202 Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 52/188 (27%), Positives = 91/188 (48%), Gaps = 6/188 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + K E L G +A PT+T YG+ + I R+Y+IK+R P SD+S Sbjct: 12 PRLVAKVVEILKNGGVVAYPTDTTYGIGCSIFSKKGIERIYQIKQRDRKKPFSFICSDMS 71 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + ++A V + + PGP T VL+ + + + L T +T RVP + Sbjct: 72 EISRYARVSNYAFKQLRRLLPGPYTFVLE--ANSVVPDLVTTKQRTVGIRVPDNKICLAI 129 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ G P+ SAN SG+ I N + + +++ L++DGG + S++V++ ++ Sbjct: 130 VKELGAPIVTTSANLSGEDPIGN-PWAVEHELGRQLDLVVDGGDLSADV-SSVVSLIGDR 187 Query: 188 KVRILRPG 195 +LR G Sbjct: 188 P-EVLRKG 194 >gi|237785866|ref|YP_002906571.1| hypothetical protein ckrop_1283 [Corynebacterium kroppenstedtii DSM 44385] gi|237758778|gb|ACR18028.1| conserved hypothetical protein [Corynebacterium kroppenstedtii DSM 44385] Length = 218 Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 55/211 (26%), Positives = 85/211 (40%), Gaps = 9/211 (4%) Query: 3 IMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58 I TD + L A + G + IPT+TVYG+ D+ + A+ L K R Sbjct: 4 IYDCTDQDERRRGLEAAQSAVKGGRLVVIPTDTVYGIGCDAFDNDAVAALLRAKHRGPDM 63 Query: 59 PLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 P+ V V V P L + FWPG L+ V+ + T + Sbjct: 64 PVPVLVGSWDTVDGLVQTVTPRMRELVQAFWPGGLSFVVTQAPSLPWDLGDTNG--SVML 121 Query: 118 RVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 R+P + P+A+ SAN SGQ T+ + E+ + +D G + IG Sbjct: 122 RMPLQPVAIELLRATGPMAVSSANISGQPPATSAIAA-KQMLGSEVSVYLDDGEATIGEP 180 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAISV 208 STI+++ +LR G + E + I Sbjct: 181 STIIDLTS-PTPHLLREGAISAERISEVIGT 210 >gi|310779285|ref|YP_003967618.1| translation factor SUA5 [Ilyobacter polytropus DSM 2926] gi|309748608|gb|ADO83270.1| translation factor SUA5 [Ilyobacter polytropus DSM 2926] Length = 209 Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 62/201 (30%), Positives = 104/201 (51%), Gaps = 9/201 (4%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 L + + +G I PT+TVYG+ A++++Y K+R +PLI VSD ++V Sbjct: 12 DLPTVAKKVKSGELIIYPTDTVYGVGGIIEKEEALKKIYVAKERTFSSPLIALVSDENIV 71 Query: 71 KKHASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 +K A +D L K FWPG LT++L ++ + + ++ R+P Sbjct: 72 EKIAYIDKNKEKIEKLMKSFWPGALTIIL--RKKKNVPSVMVSGGESIGVRMPNHPLALD 129 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 +I G LA SAN SG+ S + S K + +++DGG +G+ESTI++++ Sbjct: 130 IIRACGGILATTSANISGEPSPKRFSDV-SEEFKKRVDILVDGGACNLGIESTIIDMR-- 186 Query: 187 KKVRILRPGGLEIETLKRAIS 207 +K ILR GG+ E +++ I Sbjct: 187 EKPFILRHGGISKEEIEKIIG 207 >gi|167035000|ref|YP_001670231.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas putida GB-1] gi|166861488|gb|ABY99895.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas putida GB-1] Length = 221 Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 47/200 (23%), Positives = 80/200 (40%), Gaps = 8/200 (4%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 Q I N +++A E + G + PT++ Y L + AI R+ ++ Sbjct: 15 QFFQIHPENPQARLIKQAVEIIRKGGVVVYPTDSAYALGCQMGDKNAIERVRRLRGLDKT 74 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 + D+S + +A VD + L K PGP T +L+ L +T Sbjct: 75 HNFTLMCCDMSQLGLYAKVDTGTFRLLKAHVPGPYTFILNGTREVP-RLLLHDKRRTIGL 133 Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 RVP T L+ G PL S G + + + + L+IDGG + Sbjct: 134 RVPNHVITLALLAELGEPLMSVSLILPGDSEPMTDPYEIRERLEHHVDLVIDGGFGDL-K 192 Query: 177 ESTIVNVQCEKKVRILRPGG 196 STI+++ ++ ++R G Sbjct: 193 ASTIIDLSGDEP-ELIREGC 211 >gi|332708156|ref|ZP_08428149.1| Sua5/YciO/YrdC/YwlC family protein [Lyngbya majuscula 3L] gi|332353058|gb|EGJ32605.1| Sua5/YciO/YrdC/YwlC family protein [Lyngbya majuscula 3L] Length = 214 Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 52/207 (25%), Positives = 99/207 (47%), Gaps = 6/207 (2%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +I+ D A KA + L G + T+T+YG+ + I++++E+K R PLI Sbjct: 3 EILPADDQAARNKAVDLLKKGDVVVFSTDTIYGIGASIAKESGIKKIFEVKSRSPDKPLI 62 Query: 62 CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 +V+ +++ + ++ + WPG ++ + T + P T+ T R+P Sbjct: 63 IYVASFEQLQQVTQEIPESTIESLRKIWPGAMSGIFP--KTDIVPPFVTSGKDTVAVRIP 120 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 +L+ G PLA+ SAN SG + + ++ + + +PL++DGG + ST Sbjct: 121 NHPLCLELVRQVGAPLAVTSANVSGMETQKTAPEV-AAQLGERVPLVLDGGPNPEQQPST 179 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAI 206 +V+ ++LR G L++AI Sbjct: 180 LVDFTGS-PAQLLREGAWSFSKLRQAI 205 >gi|320352189|ref|YP_004193528.1| translation factor SUA5 [Desulfobulbus propionicus DSM 2032] gi|320120691|gb|ADW16237.1| translation factor SUA5 [Desulfobulbus propionicus DSM 2032] Length = 205 Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 50/194 (25%), Positives = 87/194 (44%), Gaps = 5/194 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A + L G I PT+T+YG+ D N A++R+Y+IK+RP P + ++ Sbjct: 14 PRLIAQAVDILQHGGVICYPTDTMYGVGCDIFNQKAVKRVYQIKRRPKDKPFSFMCASLT 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + ++ V + L + PGP T VL T + + KT RVP + Sbjct: 74 NISQYGHVGNTAYRLMRKNLPGPYTFVLS--GTKMVPKIMLTKQKTVGIRVPNHPVCLAM 131 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G+P+ SA + K++ LIID G + S+++++ E+ Sbjct: 132 LELLGNPVLNTSAMIEDDDQPVRTAMDVERLFGKQVDLIIDSG-EIVPAPSSVISLLSEQ 190 Query: 188 KVRILRPGGLEIET 201 +LR G +I Sbjct: 191 P-EVLREGRGDISA 203 >gi|262201850|ref|YP_003273058.1| sua5/YciO/YrdC/YwlC family protein [Gordonia bronchialis DSM 43247] gi|262085197|gb|ACY21165.1| Sua5/YciO/YrdC/YwlC family protein [Gordonia bronchialis DSM 43247] Length = 219 Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats. Identities = 55/210 (26%), Positives = 93/210 (44%), Gaps = 5/210 (2%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 + S +R A + AG + +PT+T+YGL D+ + A+ L K R P+ V Sbjct: 12 SRSAGIRAAVGAIKAGRLVVMPTDTLYGLGCDAFDSDAVSALLAAKNRGRDMPVPVLVGS 71 Query: 67 ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125 + +V + L + FWPG L+LV++ + T T R+P Sbjct: 72 WHTIDGLVLTVSQAARDLVEAFWPGGLSLVVEQAPSLAWDLGDTDG--TVMLRMPLHPVA 129 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 + P+A+ SAN SGQ T + + +++ + +DGG + STIV+V Sbjct: 130 IEVLREVGPMAVSSANVSGQRPATTADDA-RAQLGEDVAVYLDGGPAPAAQASTIVDVTG 188 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVD 215 RILR G + E + + V+ ++ Sbjct: 189 PVP-RILRVGAVTTEQVAEVLDVDPASLLE 217 >gi|26991184|ref|NP_746609.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas putida KT2440] gi|24986231|gb|AAN70073.1|AE016647_3 Sua5/YciO/YrdC/YwlC family protein [Pseudomonas putida KT2440] Length = 221 Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats. Identities = 47/200 (23%), Positives = 81/200 (40%), Gaps = 8/200 (4%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 Q I N +++A E + G + PT++ Y L + +AI R+ ++ Sbjct: 15 QFFQIHPENPQARLIKQAVEIIRKGGVVVYPTDSAYALGCQIGDKSAIERVRRLRGLDKT 74 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 + D+S + +A VD + L K PGP T +L+ L +T Sbjct: 75 HNFTLMCCDMSQLGLYAKVDTGTFRLLKAHVPGPYTFILNGTREVP-RLLLHDKRRTIGL 133 Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 RVP T L+ G PL S G + + + + L+IDGG + Sbjct: 134 RVPDHAITLALLAELGEPLMSVSLILPGDSEPMTDPYEIRERLEHHVDLVIDGGFGDL-K 192 Query: 177 ESTIVNVQCEKKVRILRPGG 196 STI+++ ++ ++R G Sbjct: 193 ASTIIDLSGDEP-ELIREGC 211 >gi|222055790|ref|YP_002538152.1| Sua5/YciO/YrdC/YwlC family protein [Geobacter sp. FRC-32] gi|221565079|gb|ACM21051.1| Sua5/YciO/YrdC/YwlC family protein [Geobacter sp. FRC-32] Length = 202 Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats. Identities = 56/188 (29%), Positives = 92/188 (48%), Gaps = 6/188 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 L +A E L+ G +A PT+T YG+ N I R+Y IK+R P +D+S Sbjct: 12 PRLLAQAVEILEKGGVVAYPTDTTYGIGCSIFNKKGIERIYAIKQRDRKKPFSFICADLS 71 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A V + + K F PGP T +LD +T+ + L KT R+P + Sbjct: 72 DIAHYARVSNYAFKVMKRFLPGPYTFILD--ATSVVPDLCMTKQKTVGIRIPANKICLAI 129 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + GHP+ SAN SG+ + +++ K I L +DGG+ + S++V++ ++ Sbjct: 130 TKLLGHPIITTSANLSGED-PIGDPFQVENTLGKLIDLTVDGGVLTADV-SSVVSLIGDR 187 Query: 188 KVRILRPG 195 +LR G Sbjct: 188 P-EVLRKG 194 >gi|300858258|ref|YP_003783241.1| hypothetical protein cpfrc_00840 [Corynebacterium pseudotuberculosis FRC41] gi|300685712|gb|ADK28634.1| hypothetical protein cpfrc_00840 [Corynebacterium pseudotuberculosis FRC41] gi|302205979|gb|ADL10321.1| Putative translation factor SUA5 [Corynebacterium pseudotuberculosis C231] gi|302330532|gb|ADL20726.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium pseudotuberculosis 1002] gi|308276214|gb|ADO26113.1| Putative translation factor SUA5 [Corynebacterium pseudotuberculosis I19] Length = 216 Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats. Identities = 53/215 (24%), Positives = 96/215 (44%), Gaps = 9/215 (4%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 +I +D++ AL+ A + + G + +PT+T+YG+ D+ + A+ +L K+R Sbjct: 3 RIYDCSDASIRNAALKVASDAVKDGRLVVMPTDTLYGIGCDAFDNNAVAKLLTTKQRGPD 62 Query: 58 NPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 P+ V + S L + FWPG L++V+ + + T T Sbjct: 63 MPVPVLVGSWDTARGLVHSYSEQMRTLIEAFWPGALSIVVAQAPSLQWNLGDT--RGTVM 120 Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P + P+A+ SAN SGQ T + + +DGG + +G Sbjct: 121 LRMPLHPVAIELLRETGPMAVSSANVSGQKPATTALAA-QEQLGDAVSAYLDGGATPVGT 179 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELE 211 STI+++ RILR G + E + + +++E Sbjct: 180 ASTIIDLSGPSP-RILREGAISAERIAEVLDLDVE 213 >gi|226307402|ref|YP_002767362.1| hypothetical protein RER_39150 [Rhodococcus erythropolis PR4] gi|229490001|ref|ZP_04383854.1| Sua5/YciO/YrdC/YwlC family protein [Rhodococcus erythropolis SK121] gi|226186519|dbj|BAH34623.1| conserved hypothetical protein [Rhodococcus erythropolis PR4] gi|229323102|gb|EEN88870.1| Sua5/YciO/YrdC/YwlC family protein [Rhodococcus erythropolis SK121] Length = 220 Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats. Identities = 55/198 (27%), Positives = 90/198 (45%), Gaps = 5/198 (2%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLS 80 G + +PT+T+YGLA D+ + A+ L K R P+ V + + SV P + Sbjct: 27 GRLVVLPTDTLYGLAADAFDSEAVTSLLRAKGRGRDMPVPVLVGSWNTIDGLVYSVRPQA 86 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSA 140 L + FWPG L+LV++ + + T R+P + PLA+ SA Sbjct: 87 RDLIRAFWPGGLSLVVEQAPS--LAWDLGDTRGTVMLRMPLHPVALELLRDVGPLAVSSA 144 Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200 N SG+ T V+ + + +DGG ++ + STIV++ RILR G + E Sbjct: 145 NISGRPPATTVEEA-RDQLGGSASVYLDGGKAEHAVASTIVDLTGNSP-RILRVGAVSAE 202 Query: 201 TLKRAISVELEYCVDETS 218 ++ + E V+ S Sbjct: 203 SIAEVLGTSPESLVEGVS 220 >gi|255578866|ref|XP_002530287.1| Protein SUA5, putative [Ricinus communis] gi|223530185|gb|EEF32094.1| Protein SUA5, putative [Ricinus communis] Length = 233 Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats. Identities = 67/193 (34%), Positives = 104/193 (53%), Gaps = 4/193 (2%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 +A E L AG IA+PT+T+YG A D+ + A+ R+YEIK R +PL + D+S +K Sbjct: 29 EEAVEALKAGKVIAVPTDTLYGFACDACSLEAVNRIYEIKGRKHTSPLAICIGDVSDIKH 88 Query: 73 HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETY 131 A D L L PG +T+VL+ ++ + L T RVP C F +++ Sbjct: 89 FAVTDHLPNGLLDSLLPGAVTVVLNRGESSALEKSLNPGLDTIGVRVPDCNFIREIAHGL 148 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKKVR 190 G +A+ SAN SG+ S +K ++ + + DGG+ G E ST+V++ K + Sbjct: 149 GRAVALTSANLSGKPSSVCIKD--FENLWEHCAYVYDGGVLPSGREGSTVVDLSRLGKYK 206 Query: 191 ILRPGGLEIETLK 203 ILRPG + ET++ Sbjct: 207 ILRPGSAKEETVE 219 >gi|289643110|ref|ZP_06475240.1| Sua5/YciO/YrdC/YwlC family protein [Frankia symbiont of Datisca glomerata] gi|289507074|gb|EFD28043.1| Sua5/YciO/YrdC/YwlC family protein [Frankia symbiont of Datisca glomerata] Length = 218 Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats. Identities = 51/208 (24%), Positives = 88/208 (42%), Gaps = 9/208 (4%) Query: 4 MSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 TDS L A + G + +PT+T+YG+ D+ + A+R L K R P Sbjct: 5 YDCTDSEVRVAGLEAATRAVRHGGLVVLPTDTLYGIGADAFDQVAVRALLTAKGRGPEMP 64 Query: 60 LICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 + + + V L + FWPG LTL++ + + T R Sbjct: 65 VPVLIGSWRTLDGLVERVTEQVRDLVRAFWPGGLTLIVRHAPS--LSWDLGDARGTVAVR 122 Query: 119 VPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 +P + P+A+ SAN SG+ T + + + + +DGG +G+ S Sbjct: 123 MPLHPVAIELLGRTGPMAVSSANISGRPPATTADDAF-AQLGDSVEVYLDGGPCALGVAS 181 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAI 206 TIV+ + R+LR G +++ L+ + Sbjct: 182 TIVDCTDDVP-RVLRVGAVDLAALRAVV 208 >gi|297157197|gb|ADI06909.1| hypothetical protein SBI_03788 [Streptomyces bingchenggensis BCW-1] Length = 215 Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats. Identities = 55/200 (27%), Positives = 87/200 (43%), Gaps = 7/200 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 LR+A + G + +PT+TVYG+ D+ N A+ L E K R P V + Sbjct: 14 KTGLREAASAVRRGELVVLPTDTVYGIGADAFNAEAVGDLLEAKGRGRNMPTPVLVGSPN 73 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126 + + + L FWPG LTLV + T T R+P + Sbjct: 74 TLHGLVTDLSEQAWELVDAFWPGALTLVARHQPSLTWDLGET--HGTVAVRMPLHPVAIE 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+ +G P+A+ SAN +G S + + + +DGG + + S+IV+V + Sbjct: 132 LLNDFG-PMAVSSANLTGHPSP-QDCDAAQDMLGDSVSVYLDGGPTPAAVPSSIVDVTSK 189 Query: 187 KKVRILRPGGLEIETLKRAI 206 V +LR G L E L+ + Sbjct: 190 VPV-LLRAGALSAEQLREVV 208 >gi|172040387|ref|YP_001800101.1| hypothetical protein cur_0707 [Corynebacterium urealyticum DSM 7109] gi|171851691|emb|CAQ04667.1| conserved hypothetical protein [Corynebacterium urealyticum DSM 7109] Length = 219 Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats. Identities = 54/202 (26%), Positives = 89/202 (44%), Gaps = 5/202 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 A+ A + G I +PT+T+YG+ D+ + A+ L + K R P+ + Sbjct: 14 EGAIVTAENAVKGGRLIVMPTDTLYGIGCDAFDNAAVEALLQAKHRGPDMPVPVLIGSWE 73 Query: 69 MVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 V+ A L + FWPG L+LV+ + + T T R+P Sbjct: 74 TVEGLVAEFSAHLRRLVEAFWPGGLSLVVPQAPSLPWNLGDT--RGTVMLRMPNHPIAID 131 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + P+A+ SAN SGQ T V + + + + +DGG + IG STIV++ + Sbjct: 132 LLQRTGPMAVSSANVSGQPPATTVA-MAEDQLGDSVAVYLDGGEATIGEPSTIVDLAGHR 190 Query: 188 KVRILRPGGLEIETLKRAISVE 209 RILR G + E + + + Sbjct: 191 P-RILREGAISAEQIGEVLQMP 211 >gi|254382317|ref|ZP_04997677.1| Sua5/YciO/YrdC/YwlC [Streptomyces sp. Mg1] gi|194341222|gb|EDX22188.1| Sua5/YciO/YrdC/YwlC [Streptomyces sp. Mg1] Length = 215 Score = 183 bits (466), Expect = 2e-44, Method: Composition-based stats. Identities = 51/204 (25%), Positives = 84/204 (41%), Gaps = 6/204 (2%) Query: 5 SITD-SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 TD LR+A + G + +PT+T+YG+ D+ + A+ L K R P Sbjct: 9 DATDRKTGLREAASAVRRGELVVLPTDTLYGIGADAFSAEAVGDLLAAKGRGRNMPTPVL 68 Query: 64 VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 + + + + L FWPG LTLV + + T R+P Sbjct: 69 IGSPNTLHGLVTDFSEQAWELVDAFWPGALTLVAKHQPS--LAWDLGETRGTVAVRMPLH 126 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 + T P+A+ SAN SG + + + + + +DGG + S+IV+ Sbjct: 127 PVAIELLTEVGPMAVSSANLSGHPAPEDC-DAAREMLGDSVSVYLDGGPTPGIQPSSIVD 185 Query: 183 VQCEKKVRILRPGGLEIETLKRAI 206 V + V +LR G L E L+ + Sbjct: 186 VTGKVPV-LLREGALTAEQLREVV 208 >gi|302554166|ref|ZP_07306508.1| yrdC domain-containing protein [Streptomyces viridochromogenes DSM 40736] gi|302471784|gb|EFL34877.1| yrdC domain-containing protein [Streptomyces viridochromogenes DSM 40736] Length = 215 Score = 183 bits (466), Expect = 3e-44, Method: Composition-based stats. Identities = 51/198 (25%), Positives = 85/198 (42%), Gaps = 5/198 (2%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 LR+A + G + +PT+TVYG+ D+ A+ L E K R P + + Sbjct: 15 TGLREAASAVRRGELVVLPTDTVYGIGADAFASEAVGDLLEAKGRGRNMPSPVLIGSPNT 74 Query: 70 VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128 + L+ L FWPG LTLV + T T R+P + Sbjct: 75 LHGLVTDFSELAWELVDAFWPGALTLVAKHQPSLQWDLGDT--RGTVAVRMPLHPVAIEL 132 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 T P+A+ SAN +G + + + + + +DGG + + S+IV+V E Sbjct: 133 LTEVGPMAVSSANLTGHPAPEDC-DAAQEMLGDSVSVYLDGGPTPGNVPSSIVDVTQEVP 191 Query: 189 VRILRPGGLEIETLKRAI 206 R+LR G + + L++ + Sbjct: 192 -RLLRAGAISADELRKVV 208 >gi|312887346|ref|ZP_07746947.1| Sua5/YciO/YrdC/YwlC family protein [Mucilaginibacter paludis DSM 18603] gi|311300149|gb|EFQ77217.1| Sua5/YciO/YrdC/YwlC family protein [Mucilaginibacter paludis DSM 18603] Length = 206 Score = 183 bits (465), Expect = 3e-44, Method: Composition-based stats. Identities = 48/197 (24%), Positives = 90/197 (45%), Gaps = 8/197 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSD 66 + ++ + + L G I PT+TVYGL D NP AI + +I+ +P D Sbjct: 11 NEKSIDQVVQILKRGGLIIYPTDTVYGLGCDITNPKAIDAICKIRHIKPEKANFSFICYD 70 Query: 67 ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124 +S + + +D + + K PGP T + + + + + L ++N KT RVP Sbjct: 71 LSHISDYIKPIDNATYRVLKKALPGPFTFIFN--ANSHVPKLLSSNKKTVGIRVPDNNIA 128 Query: 125 KKLIETYGHPLAIPSANRSGQIS-ITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 +++++ G+P+ S +I + ++ + L+IDGG + ST+V+ Sbjct: 129 REIVKALGNPILSSSIRDEDEIIEYSTDPELIHEKYEGLVDLVIDGGYGD-NVPSTVVDC 187 Query: 184 QCEKKVRILRPGGLEIE 200 I+R G ++E Sbjct: 188 TTGD-FEIIREGKGDLE 203 >gi|296393118|ref|YP_003658002.1| Sua5/YciO/YrdC/YwlC family protein [Segniliparus rotundus DSM 44985] gi|296180265|gb|ADG97171.1| Sua5/YciO/YrdC/YwlC family protein [Segniliparus rotundus DSM 44985] Length = 214 Score = 183 bits (465), Expect = 3e-44, Method: Composition-based stats. Identities = 48/189 (25%), Positives = 82/189 (43%), Gaps = 4/189 (2%) Query: 24 PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLSLH 82 + +PT+TVYGL D+ + A+ L K R P + + V+ A+V + Sbjct: 29 LVVMPTDTVYGLGCDAFDQGAVAALLSAKGRGRDMPTPVLIGSWATVEGLAATVSDQAWQ 88 Query: 83 LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANR 142 L FWPGPL+LVL + + + T R+P + P+A+ SANR Sbjct: 89 LIHAFWPGPLSLVLPVAPS--LAWDLGETRGTVMVRMPLHPVALQVLAKVGPMAVSSANR 146 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202 SGQ + + + ++ G + +G STI+++ + +LR G L + + Sbjct: 147 SGQPPARTAAEA-REQLGDSVSVYLESGPAPLGEPSTILDLSSGGEPTVLRQGALSVRQI 205 Query: 203 KRAISVELE 211 V + Sbjct: 206 TETTGVPVH 214 >gi|288559761|ref|YP_003423247.1| Sua5/YciO/YrdC/YwlC family translation factor [Methanobrevibacter ruminantium M1] gi|288542471|gb|ADC46355.1| Sua5/YciO/YrdC/YwlC family translation factor [Methanobrevibacter ruminantium M1] Length = 221 Score = 183 bits (465), Expect = 3e-44, Method: Composition-based stats. Identities = 60/213 (28%), Positives = 104/213 (48%), Gaps = 12/213 (5%) Query: 1 MQIMSIT----DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56 M+I + D + + +A + + G I PT+TVYGL + N A++R+Y+IK R Sbjct: 1 MKIFKMNPENPDMDLIDEAIDIMAQGGVILYPTDTVYGLGANIFNNQAVQRIYKIKHRER 60 Query: 57 MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 PL VSDI ++ A +D S + + PGP T +L+ T + P +++ K Sbjct: 61 SKPLSVLVSDIESLELIAHLDDHSREVVNKWLPGPFTFILNKQKT--VSPYVSSSTK-VG 117 Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P + + P+ SAN + + +++N H + I I L ID G G Sbjct: 118 VRIPDNKIAREL-ASIFPITTTSANIANEETLSN-PHDILKQIGDCIDLAIDVGDLTGGK 175 Query: 177 ESTIVNVQCEKKVRILRPGGLE--IETLKRAIS 207 ST++++ K ++R G + +E++K I Sbjct: 176 PSTVIDLTSAKP-SLVRKGLISNDLESIKEDIG 207 >gi|153004279|ref|YP_001378604.1| Sua5/YciO/YrdC/YwlC family protein [Anaeromyxobacter sp. Fw109-5] gi|152027852|gb|ABS25620.1| Sua5/YciO/YrdC/YwlC family protein [Anaeromyxobacter sp. Fw109-5] Length = 205 Score = 183 bits (465), Expect = 4e-44, Method: Composition-based stats. Identities = 72/191 (37%), Positives = 98/191 (51%), Gaps = 5/191 (2%) Query: 18 FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77 L G +A PTET YGL +R+P A+ RL K RP PL +D V++ A +D Sbjct: 17 VLRRGGLVAYPTETFYGLGALARDPAALERLARAKLRPEGKPLPLLAADADQVREVARLD 76 Query: 78 PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLA 136 L+ LA+ FWPGPLTLVL L D TA +T RVP + L G + Sbjct: 77 GLASRLAERFWPGPLTLVLPALPGLDAA--VTAGSRTVAVRVPGSELARALARQAGGAIV 134 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 SAN SG ++ LS S+ I ++DGG + G STIV V E +VR++R G Sbjct: 135 STSANLSGDPPPSSAAQ-LSPSLVARIDHVLDGGSTPGGRPSTIVEVVGE-RVRLVRDGV 192 Query: 197 LEIETLKRAIS 207 + E ++ A + Sbjct: 193 IPFEEVQAACA 203 >gi|256380139|ref|YP_003103799.1| Sua5/YciO/YrdC/YwlC family protein [Actinosynnema mirum DSM 43827] gi|255924442|gb|ACU39953.1| Sua5/YciO/YrdC/YwlC family protein [Actinosynnema mirum DSM 43827] Length = 216 Score = 182 bits (464), Expect = 4e-44, Method: Composition-based stats. Identities = 51/196 (26%), Positives = 90/196 (45%), Gaps = 5/196 (2%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVD 77 + +G + +PT+TVYG+ D+ + A+R L K R P+ V + + SV Sbjct: 24 VRSGRLVVLPTDTVYGIGCDAFDAAAVRSLLAAKGRGPDMPVPVLVGSWTTIDGLVLSVP 83 Query: 78 PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAI 137 + L + FWPG L+LVL + T T R+P + P+A+ Sbjct: 84 RQARSLIEAFWPGGLSLVLHHAPSLAWDLGQT--RGTVMLRMPLHPVALELLRDVGPMAV 141 Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197 SAN+SG ++ + +++ + +DGG S + STIV++ + +LR G + Sbjct: 142 SSANKSGFPPASSAAQA-REQLGEDVQVYLDGGPSGENVASTIVDLTGTDPL-VLREGAV 199 Query: 198 EIETLKRAISVELEYC 213 + + + VE+E Sbjct: 200 PVADIASVLGVEVEVA 215 >gi|239982317|ref|ZP_04704841.1| hypothetical protein SalbJ_22996 [Streptomyces albus J1074] gi|291454161|ref|ZP_06593551.1| translation factor SUA5 [Streptomyces albus J1074] gi|291357110|gb|EFE84012.1| translation factor SUA5 [Streptomyces albus J1074] Length = 215 Score = 182 bits (464), Expect = 4e-44, Method: Composition-based stats. Identities = 51/198 (25%), Positives = 86/198 (43%), Gaps = 5/198 (2%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 LR+A + G + +PT+TVYG+ D+ +P A+ L K R P + + Sbjct: 15 TGLREAASAVRRGELVVLPTDTVYGVGADAFSPEAVGDLLTAKGRGRNMPSPVLIGSPNT 74 Query: 70 VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128 + + L FWPG LTLV + + T T R+P + Sbjct: 75 LHGLVTDFSETAWDLVDAFWPGALTLVARHQPSLQWNLGDT--RGTVAVRMPLHPVAIEL 132 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 T P+A+ SAN +G S + + I + +DGG + + S+IV+V Sbjct: 133 LTETGPMAVSSANLTGHPSPETC-EAARNMLGDAISVYLDGGPTPGIVPSSIVDVTGSVP 191 Query: 189 VRILRPGGLEIETLKRAI 206 V +LR G ++ + L++ + Sbjct: 192 V-LLRAGAIDADELRKVV 208 >gi|282861119|ref|ZP_06270184.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces sp. ACTE] gi|282563777|gb|EFB69314.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces sp. ACTE] Length = 215 Score = 182 bits (464), Expect = 4e-44, Method: Composition-based stats. Identities = 52/204 (25%), Positives = 85/204 (41%), Gaps = 6/204 (2%) Query: 5 SITD-SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 TD + LR+A + G + +PT+TVYG+ D+ + I L K R P Sbjct: 9 DATDRTTGLREAASAVRRGELVVLPTDTVYGIGADAFSSEGIADLLAAKGRGRNMPTPVL 68 Query: 64 VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 + + + + L FWPG LTLV + T T R+P Sbjct: 69 IGSPNTLHGLVTDFSEEAWELVDAFWPGALTLVARHQPSLQWDLGDT--RGTVAVRMPLH 126 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 + T P+ + SAN +G S + + + +DGG + + S+IV+ Sbjct: 127 PVAIELLTEVGPMGVSSANLTGHPSPETC-DAAQDMLGDSVSVYLDGGPTPGIVPSSIVD 185 Query: 183 VQCEKKVRILRPGGLEIETLKRAI 206 V + V +LR G L +E L++ + Sbjct: 186 VTGKVPV-LLRAGALSVEELRKVV 208 >gi|302542526|ref|ZP_07294868.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces hygroscopicus ATCC 53653] gi|302460144|gb|EFL23237.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces himastatinicus ATCC 53653] Length = 215 Score = 182 bits (464), Expect = 4e-44, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 88/205 (42%), Gaps = 8/205 (3%) Query: 5 SITD-SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 TD LR+A + G + +PT+TVYG+ D+ + A+ L E K R P Sbjct: 9 DATDRKTGLREAASAVRRGELVVLPTDTVYGIGADAFSAEAVGDLLEAKGRGRNMPTPVL 68 Query: 64 VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 V + + + L FWPG LTLV + T T R+P Sbjct: 69 VGSPNTLHGLVTDFSEQAWELVDAFWPGALTLVARHQPSLTWDLGET--RGTVAVRMPLH 126 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 +L+ +G P+A+ SAN +G S + + + +DGG + + S+IV Sbjct: 127 PVAIELLNDFG-PMAVSSANLTGHPSP-QDCDAAQDMLGDSVSVYLDGGPTPAAVPSSIV 184 Query: 182 NVQCEKKVRILRPGGLEIETLKRAI 206 +V + V +LR G L E L+ + Sbjct: 185 DVTGKVPV-LLRAGALSAEQLREVV 208 >gi|298374321|ref|ZP_06984279.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 3_1_19] gi|298268689|gb|EFI10344.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 3_1_19] Length = 200 Score = 182 bits (464), Expect = 4e-44, Method: Composition-based stats. Identities = 49/195 (25%), Positives = 88/195 (45%), Gaps = 8/195 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSD 66 + + K + L G + PT+TVY + D+ N A+ ++ ++K P + L D Sbjct: 11 NQKEIDKVVKVLQDGGLVVYPTDTVYAIGCDALNVRAVEKICQMKGVNPQKSNLSIICYD 70 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTK 125 +S + ++A V + L K PGP T +L S P N K RVP T+ Sbjct: 71 LSNLSEYAKVSNAAFKLMKKHLPGPFTFILPTSSEL---PKIYKNRKEVGIRVPDNNITR 127 Query: 126 KLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 L+++ G+P+ S + I T ++ ++ ++IDGG + ST+++ Sbjct: 128 TLVQSLGNPILTMSIRDEDEVIEYTTDPELIHEKYEHQVDIVIDGGFGGL-EASTVIDCT 186 Query: 185 CEKKVRILRPGGLEI 199 + I+R G E+ Sbjct: 187 TDN-FEIVRQGKGEL 200 >gi|256838758|ref|ZP_05544268.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|262382729|ref|ZP_06075866.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 2_1_33B] gi|301307849|ref|ZP_07213805.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 20_3] gi|256739677|gb|EEU53001.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|262295607|gb|EEY83538.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 2_1_33B] gi|300834192|gb|EFK64806.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 20_3] Length = 200 Score = 182 bits (464), Expect = 4e-44, Method: Composition-based stats. Identities = 49/195 (25%), Positives = 88/195 (45%), Gaps = 8/195 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSD 66 + + K + L G + PT+TVY + D+ N A+ ++ ++K P + L D Sbjct: 11 NQKEIDKVVKVLQDGGLVVYPTDTVYAIGCDALNVRAVEKICQMKGVNPQKSNLSIICYD 70 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTK 125 +S + ++A V + L K PGP T +L S P N K RVP T+ Sbjct: 71 LSNLSEYAKVSNAAFKLMKKHLPGPFTFILPTSSEL---PKIYKNRKEVGIRVPDNNITR 127 Query: 126 KLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 L+++ G+P+ S + I T ++ ++ ++IDGG + ST+++ Sbjct: 128 TLVQSLGNPILTMSIRDEDEVIEYTTDPELIHEKYEHQVDIVIDGGFGGL-EASTVIDCT 186 Query: 185 CEKKVRILRPGGLEI 199 + I+R G E+ Sbjct: 187 TDN-FEIVRQGKGEL 200 >gi|294631402|ref|ZP_06709962.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces sp. e14] gi|292834735|gb|EFF93084.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces sp. e14] Length = 215 Score = 182 bits (464), Expect = 4e-44, Method: Composition-based stats. Identities = 53/204 (25%), Positives = 87/204 (42%), Gaps = 6/204 (2%) Query: 5 SITD-SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 TD + LR+A + G + +PT+TVYG+ D+ + A+ L + K R P Sbjct: 9 DATDRATGLREAASAVRRGELVVLPTDTVYGIGADAFSGDAVADLLDAKGRGRAMPTPVL 68 Query: 64 VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 + + + + L FWPG LTLV + T T R+P Sbjct: 69 IGSPNTLHGLVTDFSEQAWELVDAFWPGALTLVARHQPSLQWDLGDT--RGTVAVRMPLH 126 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 + T P+A+ SAN +G + + + + +DGG + + S+IV+ Sbjct: 127 PVAIELLTEVGPMAVSSANLTGHPAPETC-DAAQEMLGDSVSVYLDGGPTPGNVPSSIVD 185 Query: 183 VQCEKKVRILRPGGLEIETLKRAI 206 V E V +LR G L E L++ + Sbjct: 186 VTREVPV-LLREGALSPEELRKVV 208 >gi|192361717|ref|YP_001982272.1| Sua5/YciO/YrdC/YwlC family protein [Cellvibrio japonicus Ueda107] gi|190687882|gb|ACE85560.1| Sua5/YciO/YrdC/YwlC family protein [Cellvibrio japonicus Ueda107] Length = 205 Score = 182 bits (464), Expect = 5e-44, Method: Composition-based stats. Identities = 40/188 (21%), Positives = 80/188 (42%), Gaps = 4/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A + + G + PT++ Y L + A+ R+ +++ + D+S Sbjct: 14 QRLIQQAVDIIRKGGLVVYPTDSAYALGCHIGDKDALERIRTLRQLDKYHNFTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A V+ + L K PG T +L+ + L KT RVP L Sbjct: 74 ELATYARVNNQAFRLLKNHTPGAYTFILEATADVP-RRLMHPKRKTIGLRVPDNAIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL S G+ + + ++ ++ L+IDGG + +T+V++ + Sbjct: 133 LEELGEPLMTSSLLLPGEEYPMTDPYDIRETLEHQVDLVIDGGYCGL-EPTTVVDLTGDA 191 Query: 188 KVRILRPG 195 ++R G Sbjct: 192 P-ELIRQG 198 >gi|313497709|gb|ADR59075.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas putida BIRD-1] Length = 209 Score = 182 bits (464), Expect = 5e-44, Method: Composition-based stats. Identities = 47/200 (23%), Positives = 81/200 (40%), Gaps = 8/200 (4%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 Q I N +++A E + G + PT++ Y L + +AI R+ ++ Sbjct: 3 QFFQIHPENPQARLIKQAVEIIRKGGVVVYPTDSAYALGCQIGDKSAIERVRRLRGLDKT 62 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 + D+S + +A VD + L K PGP T +L+ L +T Sbjct: 63 HNFTLMCCDMSQLGLYAKVDTGTFRLLKAHVPGPYTFILNGTREVP-RLLLHDKRRTIGL 121 Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 RVP T L+ G PL S G + + + + L+IDGG + Sbjct: 122 RVPDHAITLALLAELGEPLMSVSLILPGDSEPMTDPYEIRERLEHHVDLVIDGGFGDL-K 180 Query: 177 ESTIVNVQCEKKVRILRPGG 196 STI+++ ++ ++R G Sbjct: 181 ASTIIDLSGDEP-ELIREGC 199 >gi|134102725|ref|YP_001108386.1| SUA5/YciO/YrdC/YwlC [Saccharopolyspora erythraea NRRL 2338] gi|291007818|ref|ZP_06565791.1| SUA5/YciO/YrdC/YwlC [Saccharopolyspora erythraea NRRL 2338] gi|133915348|emb|CAM05461.1| SUA5/YciO/YrdC/YwlC [Saccharopolyspora erythraea NRRL 2338] Length = 216 Score = 182 bits (464), Expect = 5e-44, Method: Composition-based stats. Identities = 52/191 (27%), Positives = 86/191 (45%), Gaps = 5/191 (2%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLS 80 G + +PT+TVYG+ D+ + A+ L K R P+ V S V SV + Sbjct: 27 GGLVVLPTDTVYGIGADAFDSNAVASLLAAKGRGPDMPVPVLVGSWSTVDGLVMSVPQQA 86 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSA 140 L + FWPG L++VL + +T T R+P + P+A+ SA Sbjct: 87 RALIEAFWPGGLSIVLPQAPSLSWDLGNT--RGTVNLRMPLHPVALDLLREVGPMAVSSA 144 Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200 NR+G + + + + +DGG S + STIV++ + R+LR G + ++ Sbjct: 145 NRTGHPPASTATEA-REQLGDSVSVYLDGGPSGEPVASTIVDLTQAQP-RVLREGAVGLD 202 Query: 201 TLKRAISVELE 211 L + V+ E Sbjct: 203 DLADVLGVDAE 213 >gi|296119523|ref|ZP_06838081.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium ammoniagenes DSM 20306] gi|295967406|gb|EFG80673.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium ammoniagenes DSM 20306] Length = 235 Score = 182 bits (463), Expect = 5e-44, Method: Composition-based stats. Identities = 55/213 (25%), Positives = 87/213 (40%), Gaps = 9/213 (4%) Query: 2 QIMSITDS----NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 +I +D + A + +G I PT+TVYGL D+ + A+ L K R Sbjct: 4 KIYDCSDEQQRAEGIALATKAAKSGRLIVTPTDTVYGLGCDAFDNDAVASLLAAKHRGPD 63 Query: 58 NPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 P+ + K S L + FWPG L++V+ + + T T Sbjct: 64 MPVPVLIGSWDTAKGLVQSFTDQMKLLTEAFWPGGLSIVVPQAPSLPWNLGDT--RGTVM 121 Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P + P+A+ SAN SG T + K + + +DGG + IG Sbjct: 122 LRMPLHPIAIELLREVGPMAVSSANISGHAPATTAIAA-KQQLGKAVAVYLDGGEAPIGE 180 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVE 209 STI+++ +LR G L E + I V+ Sbjct: 181 PSTIIDLSGPWPY-LLREGALSAERISEVIGVD 212 >gi|309789073|ref|ZP_07683668.1| yrdC domain protein [Shigella dysenteriae 1617] gi|308923344|gb|EFP68856.1| yrdC domain protein [Shigella dysenteriae 1617] Length = 206 Score = 182 bits (463), Expect = 6e-44, Method: Composition-based stats. Identities = 44/188 (23%), Positives = 78/188 (41%), Gaps = 4/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A E + G I PT++ Y L + A+ R+ I++ P + D+S Sbjct: 14 QRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAVERICRIRQLPDGHNFTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + ++ VD ++ L K PG T +L L KT RVP + L Sbjct: 74 ELSTYSFVDNVAFRLMKNNTPGNYTFILKGTKEVP-RRLLQEKRKTIGMRVPSNPIAQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G P+ S G + + + K++ LII GG +T++++ + Sbjct: 133 LEALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGGYLGQ-KPTTVIDLTDDT 191 Query: 188 KVRILRPG 195 V ++R G Sbjct: 192 PV-VVREG 198 >gi|54023023|ref|YP_117265.1| hypothetical protein nfa10560 [Nocardia farcinica IFM 10152] gi|54014531|dbj|BAD55901.1| hypothetical protein [Nocardia farcinica IFM 10152] Length = 234 Score = 182 bits (463), Expect = 6e-44, Method: Composition-based stats. Identities = 55/213 (25%), Positives = 94/213 (44%), Gaps = 5/213 (2%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 + + L A L +G + +PT+T+YGLA D+ + TA+ L K+R P+ V Sbjct: 25 SRAAGLTAATSALKSGRLVVMPTDTLYGLAADAFDSTAVAELLAAKRRGRDMPVPVLVGS 84 Query: 67 ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125 + + SV P + L + FWPG L+LV+ + + T R+P Sbjct: 85 WNTIDGLVFSVRPQARDLIRAFWPGGLSLVVQQAPS--LAWDLGDTRGTVMLRMPLHPVA 142 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 + PLA+ SAN SGQ T + + + +DGG + + STIV++ Sbjct: 143 LDLLRDVGPLAVSSANVSGQPPATTAAEA-REQLGSLVSVYLDGGPAAHAVASTIVDLTA 201 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETS 218 ++ RILR G + + + + + + Sbjct: 202 DRP-RILREGAVSAAEIAEVLGMSPDELTGTAA 233 >gi|227538437|ref|ZP_03968486.1| RNA binding protein [Sphingobacterium spiritivorum ATCC 33300] gi|227241719|gb|EEI91734.1| RNA binding protein [Sphingobacterium spiritivorum ATCC 33300] Length = 206 Score = 182 bits (463), Expect = 6e-44, Method: Composition-based stats. Identities = 47/198 (23%), Positives = 87/198 (43%), Gaps = 8/198 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP-LICHVSD 66 + A+++ + L G I PT+TVYG+ D N AI R+ EI+ L D Sbjct: 11 NEKAIQQVVDVLKRGGVIIYPTDTVYGIGCDITNHKAIERVCEIRGLKVDKANLSFICYD 70 Query: 67 ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124 ++ + ++ D + K PGP T + + ++ + L ++ KT RVP Sbjct: 71 LTDISQYTKPFDTSVFRVLKKALPGPFTFIFN--ASGQVPKLLSSKKKTVGIRVPDNHIV 128 Query: 125 KKLIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 ++++ G+P+ S I + ++ + L+IDGG + ST+V++ Sbjct: 129 REIVRVLGNPIVTTSIRDEDDILEYSTDPELIHEKYENMVDLVIDGGYGD-NVASTVVDL 187 Query: 184 QCEKKVRILRPGGLEIET 201 I+R G ++E Sbjct: 188 TNGD-FEIVREGKGDLEQ 204 >gi|29829452|ref|NP_824086.1| hypothetical protein SAV_2910 [Streptomyces avermitilis MA-4680] gi|29606560|dbj|BAC70621.1| hypothetical protein [Streptomyces avermitilis MA-4680] Length = 215 Score = 182 bits (463), Expect = 6e-44, Method: Composition-based stats. Identities = 51/204 (25%), Positives = 89/204 (43%), Gaps = 6/204 (2%) Query: 5 SITD-SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 TD + LR+A + G + +PT+TVYG+ D+ + A+ L + K R P Sbjct: 9 DATDRATGLREAASAVRRGELVVLPTDTVYGVGADAFSSEAVADLLQSKGRGRNMPTPVL 68 Query: 64 VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 + + + ++ L FWPG LTLV + T T R+P Sbjct: 69 IGSPNTLHGLVTDFSEMAWELVDAFWPGALTLVAKHQPSLQWDLGDT--RGTVAVRMPLH 126 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 + + P+A+ SAN +G + + + I + +DGG + + S+IV+ Sbjct: 127 PVALELLSEVGPMAVSSANLTGHPAPEDC-DAAQEMLGDSISVYLDGGPTPGIVPSSIVD 185 Query: 183 VQCEKKVRILRPGGLEIETLKRAI 206 V + + +LR G L E L++ + Sbjct: 186 VSGKIPL-LLREGALSAEELRKVV 208 >gi|302521937|ref|ZP_07274279.1| translation factor SUA5 [Streptomyces sp. SPB78] gi|333024403|ref|ZP_08452467.1| hypothetical protein STTU_1907 [Streptomyces sp. Tu6071] gi|302430832|gb|EFL02648.1| translation factor SUA5 [Streptomyces sp. SPB78] gi|332744255|gb|EGJ74696.1| hypothetical protein STTU_1907 [Streptomyces sp. Tu6071] Length = 215 Score = 182 bits (463), Expect = 7e-44, Method: Composition-based stats. Identities = 51/204 (25%), Positives = 86/204 (42%), Gaps = 6/204 (2%) Query: 5 SITD-SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 TD + LR+A + G + +PT+TVYG+ D+ + A+ L K R P Sbjct: 9 DATDRATGLREAAAAVRRGELVVLPTDTVYGIGADAFSAEAVGDLLAAKGRGRNMPSPVL 68 Query: 64 VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 + + + + L FWPG LTLV + + T R+P Sbjct: 69 IGSPNTLHGLVTDFSETAWDLVDAFWPGGLTLVARHQPS--LAWDLGDTRGTVAIRMPLH 126 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 + T P+A+ S N +G S + + + +DGG + + S+IV+ Sbjct: 127 PVAIELLTEFGPMAVSSGNLTGHPSPETC-DAAQEMLGDSVSVYLDGGPTSGNVPSSIVD 185 Query: 183 VQCEKKVRILRPGGLEIETLKRAI 206 V E V +LR G ++ E L++ + Sbjct: 186 VSGEVPV-LLRAGVIDAEELRKVV 208 >gi|326776591|ref|ZP_08235856.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces cf. griseus XylebKG-1] gi|326656924|gb|EGE41770.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces cf. griseus XylebKG-1] Length = 215 Score = 182 bits (463), Expect = 7e-44, Method: Composition-based stats. Identities = 53/204 (25%), Positives = 86/204 (42%), Gaps = 6/204 (2%) Query: 5 SITD-SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 TD + LR+A + G + +PT+TVYG+ D+ A+ L + K R P Sbjct: 9 DATDRATGLREAASAVRRGELVVLPTDTVYGIGADAFTSEAVADLLDAKGRGRNMPTPVL 68 Query: 64 VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 + + + + L FWPG LTLV + T T R+P Sbjct: 69 IGSPNTLHGLVTDFSEEAWELVDAFWPGALTLVAKHQPSLQWDLGDT--RGTVAIRMPLH 126 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 + T P+A+ SAN +G S + + + + +DGG + + S+IV+ Sbjct: 127 PVAIELLTEVGPMAVSSANLTGHPSPEDCDAAQG-MLGDSVSVYLDGGPTPGIVPSSIVD 185 Query: 183 VQCEKKVRILRPGGLEIETLKRAI 206 V V +LR G L E L++ + Sbjct: 186 VTGATPV-LLRAGALSAEELRKVV 208 >gi|82776624|ref|YP_402973.1| hypothetical protein SDY_1335 [Shigella dysenteriae Sd197] gi|81240772|gb|ABB61482.1| conserved hypothetical protein [Shigella dysenteriae Sd197] Length = 218 Score = 182 bits (462), Expect = 7e-44, Method: Composition-based stats. Identities = 44/188 (23%), Positives = 78/188 (41%), Gaps = 4/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A E + G I PT++ Y L + A+ R+ I++ P + D+S Sbjct: 26 QRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAVERICRIRQLPDGHNFTLMCRDLS 85 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + ++ VD ++ L K PG T +L L KT RVP + L Sbjct: 86 ELSTYSFVDNVAFRLMKNNTPGNYTFILKGTKEVP-RRLLQEKRKTIGMRVPSNPIAQAL 144 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G P+ S G + + + K++ LII GG +T++++ + Sbjct: 145 LEALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGGYLGQ-KPTTVIDLTDDT 203 Query: 188 KVRILRPG 195 V ++R G Sbjct: 204 PV-VVREG 210 >gi|320154891|ref|YP_004187270.1| YrdC/Sua5 family protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA [Vibrio vulnificus MO6-24/O] gi|319930203|gb|ADV85067.1| yrdC/Sua5 family protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA [Vibrio vulnificus MO6-24/O] Length = 185 Score = 182 bits (462), Expect = 8e-44, Method: Composition-based stats. Identities = 58/183 (31%), Positives = 89/183 (48%), Gaps = 7/183 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++ + L G +A PTE V+GL D N AI RL IK+RP+ LI +D ++ Sbjct: 4 LQQVVKALKQGQVVAYPTEGVFGLGCDPDNEVAIERLLTIKQRPSDKGLILIAADFQQLQ 63 Query: 72 KHASVDPL-SLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + L + L ++F WPGP T V+ ++ L T +T RV +KL Sbjct: 64 PYLDLTSLSAEQLQRVFATWPGPYTWVMP--ASARASALVTGYRQTVAVRVSDHPLVQKL 121 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 YG PL SAN SGQ V+ + + +I +I+ G I + S I + + E+ Sbjct: 122 CSEYGKPLTSTSANLSGQTECKTVEQV-QDQLGSQISVILFGEIGERHRPSEIRDARTEQ 180 Query: 188 KVR 190 +R Sbjct: 181 LLR 183 >gi|295133073|ref|YP_003583749.1| YrdC domain-containing protein [Zunongwangia profunda SM-A87] gi|294981088|gb|ADF51553.1| YrdC domain-containing protein [Zunongwangia profunda SM-A87] Length = 206 Score = 182 bits (462), Expect = 8e-44, Method: Composition-based stats. Identities = 51/209 (24%), Positives = 92/209 (44%), Gaps = 17/209 (8%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK---R 54 +I+ I + N + K + L G + PT+TVYGL D N +A+ ++ +IK Sbjct: 3 EIIRIYNENPNPREITKVVKTLRNGGLVIYPTDTVYGLGCDITNNSALEKIAQIKGVKLE 62 Query: 55 PAMNPLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK 113 A ICH D+S + + +D + + K PGP T +L + P K Sbjct: 63 KANFSFICH--DLSNLSDYVKQIDTSTFKILKRCLPGPYTFILPGNNNL---PTVFKKKK 117 Query: 114 TACFRVPC-GFTKKLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGI 171 T RVP + ++ G+P+ S + I T ++ + ++IDGG Sbjct: 118 TVGIRVPDNNICRAIVAELGNPIVSTSIRDEDEVIEYTTDPELIQEKWDNLVDIVIDGGY 177 Query: 172 SKIGLESTIVNVQCEKKVRILRPGGLEIE 200 + ST++++ ++ ++R G +E Sbjct: 178 GD-NIPSTVIDLTTDQP-EVVREGKGSLE 204 >gi|27364487|ref|NP_760015.1| Sua5 YciO YrdC YwlC family protein [Vibrio vulnificus CMCP6] gi|81448837|sp|Q8DDD6|RIMN_VIBVU RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|212288261|sp|Q7MGL3|RIMN_VIBVY RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|27360606|gb|AAO09542.1| Sua5 YciO YrdC YwlC family protein [Vibrio vulnificus CMCP6] Length = 186 Score = 182 bits (462), Expect = 8e-44, Method: Composition-based stats. Identities = 58/183 (31%), Positives = 89/183 (48%), Gaps = 7/183 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++ + L G +A PTE V+GL D N AI RL IK+RP+ LI +D ++ Sbjct: 5 LQQVVKALKQGQVVAYPTEGVFGLGCDPDNEVAIERLLTIKQRPSDKGLILIAADFQQLQ 64 Query: 72 KHASVDPL-SLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + L + L ++F WPGP T V+ ++ L T +T RV +KL Sbjct: 65 PYLDLTSLSAEQLQRVFATWPGPYTWVMP--ASARASALVTGYRQTVAVRVSDHPLVQKL 122 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 YG PL SAN SGQ V+ + + +I +I+ G I + S I + + E+ Sbjct: 123 CSEYGKPLTSTSANLSGQTECKTVEQV-QDQLGSQISVILFGEIGERHRPSEIRDARTEQ 181 Query: 188 KVR 190 +R Sbjct: 182 LLR 184 >gi|37681401|ref|NP_936010.1| putative translation factor [Vibrio vulnificus YJ016] gi|37200153|dbj|BAC95981.1| putative translation factor [Vibrio vulnificus YJ016] Length = 237 Score = 182 bits (462), Expect = 8e-44, Method: Composition-based stats. Identities = 58/183 (31%), Positives = 89/183 (48%), Gaps = 7/183 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++ + L G +A PTE V+GL D N AI RL IK+RP+ LI +D ++ Sbjct: 56 LQQVVKALKQGQVVAYPTEGVFGLGCDPDNEVAIERLLTIKQRPSDKGLILIAADFQQLQ 115 Query: 72 KHASVDPL-SLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + L + L ++F WPGP T V+ ++ L T +T RV +KL Sbjct: 116 PYLDLTSLSAEQLQRVFATWPGPYTWVMP--ASARASALVTGYRQTVAVRVSDHPLVQKL 173 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 YG PL SAN SGQ V+ + + +I +I+ G I + S I + + E+ Sbjct: 174 CSEYGKPLTSTSANLSGQTECKTVEQV-QDQLGSQISVILFGEIGERHRPSEIRDARTEQ 232 Query: 188 KVR 190 +R Sbjct: 233 LLR 235 >gi|319948466|ref|ZP_08022602.1| hypothetical protein ES5_03818 [Dietzia cinnamea P4] gi|319437886|gb|EFV92870.1| hypothetical protein ES5_03818 [Dietzia cinnamea P4] Length = 217 Score = 182 bits (462), Expect = 8e-44, Method: Composition-based stats. Identities = 56/200 (28%), Positives = 88/200 (44%), Gaps = 5/200 (2%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 L A L AG + PT+T+YG+A D+ +P A+ L K R P+ V + Sbjct: 16 GLSSAAGALRAGRLVVTPTDTLYGIAADAFDPDAVNLLLSAKHRGPDMPVPVLVGSWETI 75 Query: 71 KKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129 P + L + FWPG L+L++ + + + T T R+P + Sbjct: 76 DGLVVSTPAPARDLIRAFWPGGLSLIVHQAPSLNWNLGHT--RGTVMLRMPLHPVAIELL 133 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 PLA+ SAN SGQ T V + + + +DGG IG STIV++ Sbjct: 134 REVGPLAVSSANVSGQPPATTVAQA-REQLGDSVAVYLDGGPCAIGAPSTIVDITGAAP- 191 Query: 190 RILRPGGLEIETLKRAISVE 209 RI+R G + E + + ++ Sbjct: 192 RIVREGAVTAERVGEVLGID 211 >gi|149278400|ref|ZP_01884537.1| translation factor [Pedobacter sp. BAL39] gi|149230770|gb|EDM36152.1| translation factor [Pedobacter sp. BAL39] Length = 250 Score = 182 bits (462), Expect = 8e-44, Method: Composition-based stats. Identities = 50/198 (25%), Positives = 89/198 (44%), Gaps = 8/198 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSD 66 + A+ +A E L G I PT+TVYGL D N AI R+ I+ +P SD Sbjct: 55 NPKAIEQAVEVLKKGGIIIYPTDTVYGLGCDITNQKAIERICRIRGIKPEKANFSFVCSD 114 Query: 67 ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 + + + +D + + K PGP T +L+ + ++ L ++N KT RVP Sbjct: 115 LRHISDYIKPIDTTTFRVLKKALPGPFTFILN--ANNNVPKLLSSNKKTVGIRVPDNDIA 172 Query: 125 KKLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 ++++ G+P+ S + I + ++ + L+IDGG ST+V+ Sbjct: 173 REIVRLLGNPILSTSIKDDDEVIEYSTDPELIHEKYEDRVDLVIDGGYGD-NEPSTVVDC 231 Query: 184 QCEKKVRILRPGGLEIET 201 + ++R G ++ Sbjct: 232 TS-GEFEVIREGKGILDD 248 >gi|148263967|ref|YP_001230673.1| Sua5/YciO/YrdC/YwlC family protein [Geobacter uraniireducens Rf4] gi|146397467|gb|ABQ26100.1| translation factor SUA5 [Geobacter uraniireducens Rf4] Length = 202 Score = 182 bits (462), Expect = 8e-44, Method: Composition-based stats. Identities = 58/188 (30%), Positives = 90/188 (47%), Gaps = 6/188 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + E L+ G +A PT+T YG+ N I R+Y IK+R P +D+S Sbjct: 12 PRLVAQVVEVLNKGGVVAYPTDTTYGIGCSIFNKRGIERIYSIKQREKKKPFSFICADLS 71 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + ++A V + L K PGP T VLD +T+ + L KT R+P + Sbjct: 72 DIARYAKVSNYAFKLMKRLLPGPYTFVLD--ATSVVPDLLMTKQKTVGIRIPANKICLAV 129 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ GHP+ SAN SG+ + S + K I L IDGGI + S++V++ + Sbjct: 130 VKQLGHPIVTTSANLSGEE-PIGDPFQVESYLGKLIDLTIDGGILSADV-SSVVSLIGDV 187 Query: 188 KVRILRPG 195 +LR G Sbjct: 188 P-EVLRKG 194 >gi|196232003|ref|ZP_03130859.1| Sua5/YciO/YrdC/YwlC family protein [Chthoniobacter flavus Ellin428] gi|196224125|gb|EDY18639.1| Sua5/YciO/YrdC/YwlC family protein [Chthoniobacter flavus Ellin428] Length = 203 Score = 182 bits (462), Expect = 9e-44, Method: Composition-based stats. Identities = 71/178 (39%), Positives = 97/178 (54%), Gaps = 8/178 (4%) Query: 21 AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80 G P+ +PTETVYGLA D+ P A+ ++E K+RP +PLI H+ + + ++ S Sbjct: 27 DGQPVGLPTETVYGLAADALRPEAVAEVFEAKERPFFDPLIVHLPSRDWLDRVTNIPAES 86 Query: 81 L----HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPL 135 L FWPGPLTLVL + + T+ L T R+ + ++E YGHPL Sbjct: 87 RAMVEALITKFWPGPLTLVLPRQ--LVVPDIVTSGLDTVAVRMSAHPVFRAVVEHYGHPL 144 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 A PSANR G IS T H+ S + IPLI+DGG ++ G+ESTIV V R Sbjct: 145 AAPSANRFGHISPTTASHV-RSELHGRIPLIVDGGPTQHGVESTIVKVTVANCACCAR 201 >gi|320008547|gb|ADW03397.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces flavogriseus ATCC 33331] Length = 215 Score = 181 bits (461), Expect = 9e-44, Method: Composition-based stats. Identities = 50/204 (24%), Positives = 86/204 (42%), Gaps = 6/204 (2%) Query: 5 SITD-SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 TD + LR+A + G + +PT+TVYG+ D+ + + L + K R P Sbjct: 9 DATDRTTGLREAASAVRRGELVVLPTDTVYGIGADAFSSEGVADLLDAKGRGRNMPTPVL 68 Query: 64 VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 + + + + L FWPG LTLV + T T R+P Sbjct: 69 IGSPNTLHGLVTDFSEQAWELVDAFWPGALTLVAKHQPSLQWDLGDT--RGTVAVRMPLH 126 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 + T P+A+ SAN +G S + + + +DGG + + S+IV+ Sbjct: 127 PVAIELLTEVGPMAVSSANLTGHPSPETC-DAAQEMLGDSVSVYLDGGSTPGIVPSSIVD 185 Query: 183 VQCEKKVRILRPGGLEIETLKRAI 206 V + +LR G + +E L++ + Sbjct: 186 VTGRIPL-LLRAGAIPVEELRKVV 208 >gi|288922984|ref|ZP_06417141.1| Sua5/YciO/YrdC/YwlC family protein [Frankia sp. EUN1f] gi|288345660|gb|EFC80032.1| Sua5/YciO/YrdC/YwlC family protein [Frankia sp. EUN1f] Length = 217 Score = 181 bits (461), Expect = 9e-44, Method: Composition-based stats. Identities = 50/189 (26%), Positives = 88/189 (46%), Gaps = 5/189 (2%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-VD 77 + +G + +PT+T+YG+ D+ +P A+ L K R P+ V + V Sbjct: 24 VRSGRLVVLPTDTLYGIGADAFDPVAVGCLLGAKGRGRDMPVPVLVGSWRTLDGLVEQVT 83 Query: 78 PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAI 137 L + FWPG LTLV++ + + T R+P + T P+A+ Sbjct: 84 DQVRDLVRAFWPGGLTLVVNHAPS--LSWDLGDARGTVAVRMPLHPVAIELLTRTGPMAV 141 Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197 SAN SG+ T + L + + + + +DGG + +G STI++ V ++R G + Sbjct: 142 SSANISGRPPATTAQDAL-AQLGGAVDVYLDGGRTPVGKASTILDCTGTVPV-VVREGAV 199 Query: 198 EIETLKRAI 206 +IE L+ + Sbjct: 200 DIEALRSVV 208 >gi|318060716|ref|ZP_07979439.1| hypothetical protein SSA3_22428 [Streptomyces sp. SA3_actG] gi|318075507|ref|ZP_07982839.1| hypothetical protein SSA3_01992 [Streptomyces sp. SA3_actF] Length = 215 Score = 181 bits (461), Expect = 9e-44, Method: Composition-based stats. Identities = 50/204 (24%), Positives = 86/204 (42%), Gaps = 6/204 (2%) Query: 5 SITD-SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 TD + LR+A + G + +PT+TVYG+ D+ + A+ L K R P Sbjct: 9 DATDRATGLREAAAAVRRGELVVLPTDTVYGIGADAFSAEAVGDLLAAKGRGRNMPSPVL 68 Query: 64 VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 + + + + L FWPG LTLV + + T R+P Sbjct: 69 IGSPNTLHGLVTDFSETAWDLVDAFWPGGLTLVARHQPS--LAWDLGDTRGTVAIRMPLH 126 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 + T P+A+ S N +G + + + + +DGG + + S+IV+ Sbjct: 127 PVAIELLTEFGPMAVSSGNLTGHPAPETC-DAAQEMLGDSVSVYLDGGPTSGNVPSSIVD 185 Query: 183 VQCEKKVRILRPGGLEIETLKRAI 206 V E V +LR G ++ E L++ + Sbjct: 186 VSGEVPV-LLRAGVIDAEELRKVV 208 >gi|150009964|ref|YP_001304707.1| hypothetical protein BDI_3382 [Parabacteroides distasonis ATCC 8503] gi|255012773|ref|ZP_05284899.1| hypothetical protein B2_02632 [Bacteroides sp. 2_1_7] gi|149938388|gb|ABR45085.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503] Length = 200 Score = 181 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 49/195 (25%), Positives = 88/195 (45%), Gaps = 8/195 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSD 66 + + K + L G + PT+TVY + D+ N A+ ++ ++K P + L D Sbjct: 11 NQKEIDKVVKVLQDGGLVVYPTDTVYAIGCDALNVRAVEKICQMKGVNPQKSNLSIICYD 70 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTK 125 +S + ++A V + L K PGP T +L S P N K RVP T+ Sbjct: 71 LSNLSEYAKVSNAAFKLMKKHLPGPFTFILPTSSEL---PKIYKNRKEVGIRVPDNNITR 127 Query: 126 KLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 L+++ G+P+ S + I T ++ ++ ++IDGG + ST+++ Sbjct: 128 TLVQSLGNPILTMSIRDKDEVIEYTTDPELIHEKYEHQVDIVIDGGFGGL-EASTVIDCT 186 Query: 185 CEKKVRILRPGGLEI 199 + I+R G E+ Sbjct: 187 TDN-FEIVRQGKGEL 200 >gi|51246039|ref|YP_065923.1| hypothetical protein DP2187 [Desulfotalea psychrophila LSv54] gi|50877076|emb|CAG36916.1| hypothetical protein DP2187 [Desulfotalea psychrophila LSv54] Length = 218 Score = 181 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 65/202 (32%), Positives = 99/202 (49%), Gaps = 6/202 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++ +A + + G +A PTET YGLAVD N AI RLY +K R PL+ V++ + Sbjct: 19 KSSILQAVDVIRRGGIVAFPTETSYGLAVDPYNVEAIERLYSLKGRHRSKPLLLLVANHA 78 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF-RVPCGFTKK 126 + ++ PL L FWPGPLTL+ T I + T KT R P + Sbjct: 79 QLLDCVCAIPPLYKPLIARFWPGPLTLIFQAKET--IPAILTGGSKTIAIRRSPHPVAQF 136 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 +E+ G PL SAN S + + L + IID G + STI+ V+ E Sbjct: 137 FVESAGIPLTATSANFSQKKPALTAQDCL-HMFGDLVDYIIDDGQRGLNGFSTILAVKKE 195 Query: 187 KKVRILRPGGLEIETLKRAISV 208 + ++R G L ++T+ R + + Sbjct: 196 G-LIVIREGELSLKTIARELDI 216 >gi|239944289|ref|ZP_04696226.1| hypothetical protein SrosN15_25025 [Streptomyces roseosporus NRRL 15998] gi|239990744|ref|ZP_04711408.1| hypothetical protein SrosN1_25792 [Streptomyces roseosporus NRRL 11379] gi|291447757|ref|ZP_06587147.1| translation factor SUA5 [Streptomyces roseosporus NRRL 15998] gi|291350704|gb|EFE77608.1| translation factor SUA5 [Streptomyces roseosporus NRRL 15998] Length = 215 Score = 181 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 52/204 (25%), Positives = 86/204 (42%), Gaps = 6/204 (2%) Query: 5 SITD-SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 TD + LR+A + G + +PT+TVYG+ D+ A+ L + K R P Sbjct: 9 DATDRTTGLREAASAVRRGELVVLPTDTVYGIGADAFTSEAVADLLDAKGRGRNMPTPVL 68 Query: 64 VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 + + + + L FWPG LTLV + T T R+P Sbjct: 69 IGSPNTLHGLVTDFSEEAWELVDAFWPGALTLVARHQPSLQWDLGDT--RGTVAIRMPLH 126 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 + T P+A+ SAN +G + + + + + +DGG + + S+IV+ Sbjct: 127 PVAIELLTEVGPMAVSSANLTGHPAPEDCDAAQG-MLGDSVSVYLDGGPTPGIVPSSIVD 185 Query: 183 VQCEKKVRILRPGGLEIETLKRAI 206 V V +LR G L E L++ + Sbjct: 186 VTGATPV-LLRAGALSAEELRKVV 208 >gi|332827684|gb|EGK00423.1| Sua5/YciO/YrdC/YwlC family protein [Dysgonomonas gadei ATCC BAA-286] Length = 202 Score = 181 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 54/195 (27%), Positives = 90/195 (46%), Gaps = 8/195 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR-PAMNPLICHVSD 66 + + K + L G I PT+TVY + D+ N A+ ++ +K P + L D Sbjct: 11 NPKEIDKIIKVLQDGGLIVYPTDTVYAIGCDALNVRAVEKICRMKDINPEKSNLSIICYD 70 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTK 125 +S + ++A VD + L K PGP T +L+ S+ P N KT R+P + Sbjct: 71 LSNISEYARVDNNTFKLMKKNLPGPFTFILNTTSSL---PKIYKNKKTVGIRIPDNNIIR 127 Query: 126 KLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 +L+ T G+P+ S + I T ++ + ++IDGG I STIV+ Sbjct: 128 ELVHTLGNPIMTTSVKDDDEVIEYTTDPELIYERYQDLVDIVIDGGYGGI-EASTIVDCT 186 Query: 185 CEKKVRILRPGGLEI 199 ++ I+R G E+ Sbjct: 187 GDEP-EIMRQGKGEL 200 >gi|302414222|ref|XP_003004943.1| SUA5 [Verticillium albo-atrum VaMs.102] gi|261356012|gb|EEY18440.1| SUA5 [Verticillium albo-atrum VaMs.102] Length = 414 Score = 181 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 74/203 (36%), Positives = 107/203 (52%), Gaps = 23/203 (11%) Query: 27 IPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP-------- 78 +P ETVYGL D+ A++ +Y K RP+ NPLI HVSD++M+++ + P Sbjct: 191 LPDETVYGLGADATRSAAVKGIYAAKGRPSDNPLIIHVSDLTMLRRFLAPPPPSDTPDAV 250 Query: 79 ------------LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125 + L + FWPGPLT++L L S + + P TA L T R+P Sbjct: 251 VTAAAAADPIPAIYKPLLERFWPGPLTILLPLPSPSPLAPEVTAGLPTFAVRMPASPLAL 310 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LI PLA PSAN S + S T +H+L + I LI+D G +G+EST+V+ C Sbjct: 311 SLIALADTPLAGPSANASTKPSPTAARHVL-DDLAGRIELILDAGPCDVGVESTVVDGLC 369 Query: 186 EKKVRILRPGGLEIETLKRAISV 208 + V ILRPGG+ ++ L+ Sbjct: 370 DPPV-ILRPGGIALDRLRACPGW 391 >gi|254387521|ref|ZP_05002760.1| Sua5/YciO/YrdC/YwlC [Streptomyces clavuligerus ATCC 27064] gi|294815092|ref|ZP_06773735.1| Sua5/YciO/YrdC/YwlC [Streptomyces clavuligerus ATCC 27064] gi|326443454|ref|ZP_08218188.1| hypothetical protein SclaA2_20413 [Streptomyces clavuligerus ATCC 27064] gi|197701247|gb|EDY47059.1| Sua5/YciO/YrdC/YwlC [Streptomyces clavuligerus ATCC 27064] gi|294327691|gb|EFG09334.1| Sua5/YciO/YrdC/YwlC [Streptomyces clavuligerus ATCC 27064] Length = 215 Score = 181 bits (460), Expect = 1e-43, Method: Composition-based stats. Identities = 51/199 (25%), Positives = 86/199 (43%), Gaps = 5/199 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + LR+A + G + +PT+TVYG+ D+ + A+ L E K R P + + Sbjct: 14 ATGLREATSAVRRGELVVLPTDTVYGIGADAFSSEAVSDLLEAKGRGRNMPTPVLIGSPN 73 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 + + L FWPG LTLV + T T R+P Sbjct: 74 TLHGLVTDFSEQAWELVDAFWPGALTLVAKHQPSLQWDLGDT--RGTVAVRMPLHPVAIE 131 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + T P+A+ SAN +G + + + + + +DGG + + S+IV+V Sbjct: 132 LLTETGPMAVSSANLTGHRAPEDC-DAAQEMLGDSVSVYLDGGPTPGIVPSSIVDVTGRV 190 Query: 188 KVRILRPGGLEIETLKRAI 206 V +LR G L+ E L++ + Sbjct: 191 PV-LLRAGALDAEELRKVV 208 >gi|260854965|ref|YP_003228856.1| hypothetical protein ECO26_1832 [Escherichia coli O26:H11 str. 11368] gi|257753614|dbj|BAI25116.1| conserved predicted protein [Escherichia coli O26:H11 str. 11368] gi|323153301|gb|EFZ39559.1| yrdC domain protein [Escherichia coli EPECa14] Length = 206 Score = 181 bits (460), Expect = 1e-43, Method: Composition-based stats. Identities = 45/188 (23%), Positives = 79/188 (42%), Gaps = 4/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A E + G I PT++ Y L + A+ R+ I++ P + D+S Sbjct: 14 QRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + ++ VD ++ L K PG T +L L KT RVP + L Sbjct: 74 ELSTYSFVDNVAFRLMKNNTPGNYTFILKGTKEVP-RRLLQEKRKTIGMRVPSNPIAQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G P+ S G + + + K++ LII GG +T++++ +K Sbjct: 133 LEALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGGYLGQ-KPTTVIDLTDDK 191 Query: 188 KVRILRPG 195 V ++R G Sbjct: 192 PV-VVREG 198 >gi|77457715|ref|YP_347220.1| translation factor SUA5 [Pseudomonas fluorescens Pf0-1] gi|77381718|gb|ABA73231.1| conserved hypothetical protein [Pseudomonas fluorescens Pf0-1] Length = 209 Score = 181 bits (460), Expect = 1e-43, Method: Composition-based stats. Identities = 44/200 (22%), Positives = 82/200 (41%), Gaps = 8/200 (4%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 Q I N +++A E + G + PT++ Y + + AI R+ +++ Sbjct: 3 QFFQIHPENPQARLIKQAVEIIRKGGVVVYPTDSSYAIGCQIGDKNAIERVRRLRQLDEK 62 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 + SD+S + +A +D + + K PGP T +L+ L +T Sbjct: 63 HNFALICSDLSQLGNYAKIDTATFRILKAHLPGPYTFILNATREVP-RLLLHPKKRTIGL 121 Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 RVP L+ G PL + G + + + + ++ LIIDGG I Sbjct: 122 RVPSHPIALALLAELGEPLMSVTLIMPGDEDPLSDPYEMRQVLEHQVDLIIDGGSGGI-K 180 Query: 177 ESTIVNVQCEKKVRILRPGG 196 ST++++ + ++R G Sbjct: 181 ASTVIDLTGDDP-EVIRVGC 199 >gi|284921148|emb|CBG34214.1| conserved hypothetical protein [Escherichia coli 042] gi|323964604|gb|EGB60077.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli M863] gi|323977102|gb|EGB72189.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli TW10509] gi|327253957|gb|EGE65586.1| yrdC domain protein [Escherichia coli STEC_7v] Length = 206 Score = 181 bits (460), Expect = 1e-43, Method: Composition-based stats. Identities = 45/188 (23%), Positives = 78/188 (41%), Gaps = 4/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A E + G I PT++ Y L + A+ R+ I++ P + D+S Sbjct: 14 QRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + ++ VD ++ L K PG T +L L KT RVP + L Sbjct: 74 ELSTYSFVDNVAFRLMKNNTPGNYTFILKGTKEVP-RRLLQEKRKTIGMRVPSNPIAQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G P+ S G + + + K++ LII GG +T++++ + Sbjct: 133 LEALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGGYLGQ-KPTTVIDLTDDT 191 Query: 188 KVRILRPG 195 V +LR G Sbjct: 192 PV-VLREG 198 >gi|320353909|ref|YP_004195248.1| translation factor SUA5 [Desulfobulbus propionicus DSM 2032] gi|320122411|gb|ADW17957.1| translation factor SUA5 [Desulfobulbus propionicus DSM 2032] Length = 211 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 70/206 (33%), Positives = 104/206 (50%), Gaps = 7/206 (3%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 +++T N L +A L +G +A PTET YGLAVD N A+ RL++IK+R P++ Sbjct: 5 LAVTPEN-LDRAAAVLLSGGVVAFPTETYYGLAVDPFNQKALERLFQIKRRARELPILVL 63 Query: 64 VSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PC 121 VS V++ P + L + FWPGPLTLV S+ + T N T R P Sbjct: 64 VSSHEQVRRLVEEIPAIYNCLIEAFWPGPLTLVYPARSS--VPNRLTGNTGTVGIRHSPN 121 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 +LI+ +G P+ SANRSG + + E+ LI+DGG + G ST+V Sbjct: 122 ETANRLIDVFGGPITATSANRSGSPAAVTADEV-ERIFDTEVDLILDGGHTPGGSGSTLV 180 Query: 182 NVQCEKKVRILRPGGLEIETLKRAIS 207 + + LR G L T++ ++ Sbjct: 181 GLHGA-TLTCLREGKLAFATVRSRVA 205 >gi|290957363|ref|YP_003488545.1| hypothetical protein SCAB_28871 [Streptomyces scabiei 87.22] gi|260646889|emb|CBG69986.1| conserved hypothetical protein [Streptomyces scabiei 87.22] Length = 215 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 52/199 (26%), Positives = 86/199 (43%), Gaps = 5/199 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + LR+A + G + +PT+TVYG+ D+ A+ L E K R P + + Sbjct: 14 ATGLREAASAVRRGELVVLPTDTVYGIGADAFTAEAVADLLEAKGRGRSMPTPVLIGSPN 73 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 + ++ L FWPG LTLV + T T R+P Sbjct: 74 TLHGLVTDFSEMAWELVDAFWPGALTLVAKHQPSLQWDLGDT--RGTVAVRMPLHPVAIE 131 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + T P+A+ SAN +G + N + + + + +DGG + S+IV+V + Sbjct: 132 LLTEVGPMAVSSANLTGHPAPENC-DAAEAMLGDSVSVYLDGGPTPGIEPSSIVDVTGKV 190 Query: 188 KVRILRPGGLEIETLKRAI 206 V +LR G L E L++ + Sbjct: 191 PV-LLRAGALSAEELRKVV 208 >gi|124486054|ref|YP_001030670.1| translation factor SUA5 [Methanocorpusculum labreanum Z] gi|124363595|gb|ABN07403.1| translation factor SUA5 [Methanocorpusculum labreanum Z] Length = 198 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 102/204 (50%), Gaps = 13/204 (6%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 +++ T+ + + KA L + PTETVYGL D+ + TA+ ++YE K+RP P+ Sbjct: 1 MITPTEESRIEKAVRVLSRDGLVVYPTETVYGLGADALSDTAVIKVYEAKQRPLGKPISV 60 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 VSDI M+ A V P + F PGP+T+VL + + + + T R P Sbjct: 61 AVSDIEMIYGIADVSPFAERFISKFLPGPVTIVLPVKNC--LPGDLSGGTGTIGIRYPDH 118 Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 +LI + P+ SAN SG+IS +V + ++DGG+ G+ ST+V Sbjct: 119 TLALELISMFDCPITATSANISGEISPVSVDQV-----NVPHDYLLDGGVLP-GIPSTVV 172 Query: 182 NVQCEKKVRILRPGGLEIETLKRA 205 N++ I RPG + ++ + R Sbjct: 173 NLETRN---IERPGAM-LDDIARF 192 >gi|182435967|ref|YP_001823686.1| hypothetical protein SGR_2174 [Streptomyces griseus subsp. griseus NBRC 13350] gi|178464483|dbj|BAG19003.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus NBRC 13350] Length = 215 Score = 180 bits (458), Expect = 2e-43, Method: Composition-based stats. Identities = 53/204 (25%), Positives = 85/204 (41%), Gaps = 6/204 (2%) Query: 5 SITD-SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 TD + LR+A + G + +PT+TVYG+ D+ A+ L + K R P Sbjct: 9 DATDRATGLREAASAVRRGELVVLPTDTVYGIGADAFTSEAVADLLDAKGRGRNMPTPVL 68 Query: 64 VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 + + + + L FWPG LTLV + T T R+P Sbjct: 69 IGSPNTLHGLVTDFSEEAWELVDAFWPGALTLVAKHQPSLQWDLGDT--RGTVAIRMPLH 126 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 + T P+A+ SAN +G S + + + + +DGG + + S+IV+ Sbjct: 127 PVAIELLTEVGPMAVSSANLTGHPSPEDCDAAQG-MLGDSVSVYLDGGPTPGIVPSSIVD 185 Query: 183 VQCEKKVRILRPGGLEIETLKRAI 206 V V +LR G L E L+ + Sbjct: 186 VTGATPV-LLRAGALSAEELRTVV 208 >gi|295836496|ref|ZP_06823429.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces sp. SPB74] gi|197699010|gb|EDY45943.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces sp. SPB74] Length = 215 Score = 180 bits (458), Expect = 2e-43, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 89/205 (43%), Gaps = 8/205 (3%) Query: 5 SITD-SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 TD + LR+A + G + +PT+TVYG+ D+ + A+ L K R P Sbjct: 9 DATDRATGLREAAAAVRRGELVVLPTDTVYGIGADAFSAEAVGDLLTAKGRGRNMPSPVL 68 Query: 64 VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 + + + + L FWPG LTLV + + T R+P Sbjct: 69 IGSPNTLHGLVTDFSETAWDLVDAFWPGGLTLVARHQPS--LAWDLGDTRGTVAIRMPLH 126 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 +L+ +G P+A+ S N +G S + + + +DGG + + S+IV Sbjct: 127 PVAIELLSDFG-PMAVSSGNLTGHPSPETC-DAAQEMLGDSVSVYLDGGPTSGNVPSSIV 184 Query: 182 NVQCEKKVRILRPGGLEIETLKRAI 206 +V E V +LR G ++ E L++ + Sbjct: 185 DVSGEVPV-LLRAGVIDTEELRKVV 208 >gi|300769987|ref|ZP_07079866.1| Sua5/YciO/YrdC/YwlC family protein [Sphingobacterium spiritivorum ATCC 33861] gi|300762463|gb|EFK59280.1| Sua5/YciO/YrdC/YwlC family protein [Sphingobacterium spiritivorum ATCC 33861] Length = 206 Score = 180 bits (458), Expect = 2e-43, Method: Composition-based stats. Identities = 47/198 (23%), Positives = 87/198 (43%), Gaps = 8/198 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP-LICHVSD 66 + A+++ + L G I PT+TVYG+ D N AI R+ EI+ L D Sbjct: 11 NEKAIQQVVDVLKRGGVIIYPTDTVYGIGCDITNHKAIERVCEIRGMKVDKANLSFICYD 70 Query: 67 ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124 ++ + ++ D + K PGP T + + ++ + L ++ KT RVP Sbjct: 71 LTDISQYTKPFDTSVFRVLKKALPGPFTFIFN--ASGQVPKLLSSKKKTVGIRVPDNHIV 128 Query: 125 KKLIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 ++++ G+P+ S I + ++ + L+IDGG + ST+V++ Sbjct: 129 REIVRVLGNPIVTASIRDEDDILEYSTDPELIHEKYENMVDLVIDGGYGD-NVASTVVDL 187 Query: 184 QCEKKVRILRPGGLEIET 201 I+R G ++E Sbjct: 188 TGGD-FEIVREGKGDLEQ 204 >gi|254786472|ref|YP_003073901.1| Sua5/YciO/YrdC/YwlC family protein [Teredinibacter turnerae T7901] gi|237685207|gb|ACR12471.1| Sua5/YciO/YrdC/YwlC family protein [Teredinibacter turnerae T7901] Length = 224 Score = 180 bits (458), Expect = 2e-43, Method: Composition-based stats. Identities = 51/208 (24%), Positives = 88/208 (42%), Gaps = 10/208 (4%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 Q SI N + +A + L G I PT++ Y L + A+ R+ +++ Sbjct: 21 QFFSIHPENPQARLISQAVDILRRGGLIVYPTDSAYALGCHIGDKLALDRIRALRQLDKH 80 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 + D+S + +A VD + + K PGP T +L+ S L KT Sbjct: 81 HNFTLMCRDLSELANYARVDNTAYRIIKSHTPGPFTFILNATSEVP-RRLQHPKRKTLGM 139 Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 RVP L+E G PL S G + + ++ + L+IDGG GL Sbjct: 140 RVPDNAIALALLEELGEPLMSSSLILPGDTLPLTDPYDIRDTLEHQCELVIDGGFC--GL 197 Query: 177 EST-IVNVQCEKKVRILRPGGLEIETLK 203 E T ++++ ++ +++R G +I + Sbjct: 198 EPTSVIDLTGDEP-QVMREGCGDISDFR 224 >gi|158312866|ref|YP_001505374.1| Sua5/YciO/YrdC/YwlC family protein [Frankia sp. EAN1pec] gi|158108271|gb|ABW10468.1| Sua5/YciO/YrdC/YwlC family protein [Frankia sp. EAN1pec] Length = 216 Score = 180 bits (458), Expect = 2e-43, Method: Composition-based stats. Identities = 53/219 (24%), Positives = 93/219 (42%), Gaps = 9/219 (4%) Query: 1 MQIMSITDS----NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56 MQ+ +D L A + + G + +PT+T+YG+ D+ N A+ L K R Sbjct: 1 MQVFDCSDEGQRKAGLDAATDAVGRGKLVVLPTDTLYGIGADAFNRDAVTALLAAKGRGR 60 Query: 57 MNPLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115 P+ V + A V L + FWPG LTLV++ + + T Sbjct: 61 NMPVPVLVGSWRTLDGLAEQVTGHIRDLVRAFWPGGLTLVVNHAPS--LRWDLGDARGTV 118 Query: 116 CFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R+P + P+A+ SAN SG+ T+ + + + + +DGG + +G Sbjct: 119 AVRMPLHPVAIELLGRTGPMAVSSANISGRPPATSAVDAV-AQLGGAAAVYLDGGTTPVG 177 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV 214 STIV+ ++R G +++ L+ + + E Sbjct: 178 TASTIVDCTGPVP-TVVREGAVDLAALRSVLPLVREPAA 215 >gi|261213222|ref|ZP_05927504.1| YrdC family protein [Vibrio sp. RC341] gi|260837496|gb|EEX64199.1| YrdC family protein [Vibrio sp. RC341] Length = 185 Score = 180 bits (458), Expect = 2e-43, Method: Composition-based stats. Identities = 53/188 (28%), Positives = 87/188 (46%), Gaps = 10/188 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++A + L G IA PTE V+GL D N A+ RL IK+RP +I ++ ++ Sbjct: 4 LQQAVDVLQRGGVIAYPTEGVFGLGCDPDNQAAMLRLLAIKQRPIEKGVILIAANYEQLR 63 Query: 72 KHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + D L+ WP PLT V+ ++ D T RV ++L Sbjct: 64 PYIDEDQLTEQQLLQVLASWPAPLTWVMP--ASVDTPSWVRGQFDTVAVRVSNHPLVQQL 121 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +G PL SAN SGQ + T + ++ + + +I +++G S S I + + Sbjct: 122 CLAFGKPLTSTSANLSGQPACTTRQEVV-AQLGNQIETVLEGETSGRCGPSEIRDARS-- 178 Query: 188 KVRILRPG 195 +++LR G Sbjct: 179 -LQVLRQG 185 >gi|224104509|ref|XP_002313460.1| predicted protein [Populus trichocarpa] gi|222849868|gb|EEE87415.1| predicted protein [Populus trichocarpa] Length = 232 Score = 180 bits (458), Expect = 2e-43, Method: Composition-based stats. Identities = 65/193 (33%), Positives = 100/193 (51%), Gaps = 4/193 (2%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 ++A E L AG IA+PT+T+YG A D+ + A+ R+YE+K R +PL V D+S ++ Sbjct: 28 QEAIEALKAGKVIAVPTDTLYGFACDACSLEAVNRIYEMKGRKHTSPLAICVGDVSQIQH 87 Query: 73 HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETY 131 A + L L PGP+T++L ++ + L + RVP C F + + Sbjct: 88 FAVTEYLPHGLLDSLLPGPVTVILRRGESSALEKSLNPGLDSVGVRVPDCNFIRVVARGL 147 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKKVR 190 G +A+ SAN SGQ S +K ++ + DGG+ STIV++ K + Sbjct: 148 GKAVALTSANLSGQPSSLCIKD--FENLWNRCAYVYDGGVLPSNRAGSTIVDLTRPGKYK 205 Query: 191 ILRPGGLEIETLK 203 ILRPG + ETL Sbjct: 206 ILRPGSAKEETLA 218 >gi|89108113|ref|AP_001893.1| hypothetical protein [Escherichia coli str. K-12 substr. W3110] gi|110641496|ref|YP_669226.1| hypothetical protein ECP_1314 [Escherichia coli 536] gi|157155810|ref|YP_001462564.1| hypothetical protein EcE24377A_1466 [Escherichia coli E24377A] gi|157160772|ref|YP_001458090.1| hypothetical protein EcHS_A1376 [Escherichia coli HS] gi|162135901|ref|NP_415783.6| predicted RNA binding protein [Escherichia coli str. K-12 substr. MG1655] gi|168758351|ref|ZP_02783358.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4401] gi|170020369|ref|YP_001725323.1| hypothetical protein EcolC_2361 [Escherichia coli ATCC 8739] gi|170080944|ref|YP_001730264.1| hypothetical protein ECDH10B_1382 [Escherichia coli str. K-12 substr. DH10B] gi|187733520|ref|YP_001880097.1| hypothetical protein SbBS512_E1491 [Shigella boydii CDC 3083-94] gi|188495376|ref|ZP_03002646.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli 53638] gi|191166644|ref|ZP_03028472.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli B7A] gi|193069999|ref|ZP_03050947.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli E110019] gi|194435054|ref|ZP_03067293.1| Sua5/YciO/YrdC/YwlC family protein [Shigella dysenteriae 1012] gi|195939200|ref|ZP_03084582.1| hypothetical protein EscherichcoliO157_22736 [Escherichia coli O157:H7 str. EC4024] gi|209918507|ref|YP_002292591.1| hypothetical protein ECSE_1316 [Escherichia coli SE11] gi|215486562|ref|YP_002328993.1| hypothetical protein E2348C_1457 [Escherichia coli O127:H6 str. E2348/69] gi|218549042|ref|YP_002382833.1| hypothetical protein EFER_1690 [Escherichia fergusonii ATCC 35469] gi|218553819|ref|YP_002386732.1| hypothetical protein ECIAI1_1286 [Escherichia coli IAI1] gi|218558252|ref|YP_002391165.1| hypothetical protein ECS88_1401 [Escherichia coli S88] gi|218689257|ref|YP_002397469.1| hypothetical protein ECED1_1473 [Escherichia coli ED1a] gi|218694838|ref|YP_002402505.1| hypothetical protein EC55989_1424 [Escherichia coli 55989] gi|218699974|ref|YP_002407603.1| hypothetical protein ECIAI39_1603 [Escherichia coli IAI39] gi|218704790|ref|YP_002412309.1| hypothetical protein ECUMN_1565 [Escherichia coli UMN026] gi|238900500|ref|YP_002926296.1| hypothetical protein BWG_1096 [Escherichia coli BW2952] gi|253773736|ref|YP_003036567.1| hypothetical protein ECBD_2356 [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161346|ref|YP_003044454.1| hypothetical protein ECB_01241 [Escherichia coli B str. REL606] gi|254792855|ref|YP_003077692.1| hypothetical protein ECSP_1785 [Escherichia coli O157:H7 str. TW14359] gi|256018487|ref|ZP_05432352.1| hypothetical protein ShiD9_06202 [Shigella sp. D9] gi|256023025|ref|ZP_05436890.1| hypothetical protein E4_06609 [Escherichia sp. 4_1_40B] gi|260843615|ref|YP_003221393.1| hypothetical protein ECO103_1429 [Escherichia coli O103:H2 str. 12009] gi|260867716|ref|YP_003234118.1| hypothetical protein ECO111_1647 [Escherichia coli O111:H- str. 11128] gi|261224249|ref|ZP_05938530.1| hypothetical protein EscherichiacoliO157_06545 [Escherichia coli O157:H7 str. FRIK2000] gi|261257495|ref|ZP_05950028.1| hypothetical protein EscherichiacoliO157EcO_16982 [Escherichia coli O157:H7 str. FRIK966] gi|293404808|ref|ZP_06648800.1| hypothetical protein ECGG_00131 [Escherichia coli FVEC1412] gi|293409651|ref|ZP_06653227.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli B354] gi|293414599|ref|ZP_06657248.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli B185] gi|293433628|ref|ZP_06662056.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli B088] gi|298380449|ref|ZP_06990048.1| hypothetical protein ECFG_00142 [Escherichia coli FVEC1302] gi|300820148|ref|ZP_07100317.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 107-1] gi|300822570|ref|ZP_07102709.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 119-7] gi|300896125|ref|ZP_07114679.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 198-1] gi|300904136|ref|ZP_07122009.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 84-1] gi|300919447|ref|ZP_07135948.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 115-1] gi|300926648|ref|ZP_07142425.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 182-1] gi|300927773|ref|ZP_07143337.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 187-1] gi|300940070|ref|ZP_07154680.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 21-1] gi|300951923|ref|ZP_07165727.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 116-1] gi|300955868|ref|ZP_07168207.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 175-1] gi|300971790|ref|ZP_07171624.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 200-1] gi|300982414|ref|ZP_07176111.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 45-1] gi|301019491|ref|ZP_07183660.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 69-1] gi|301046929|ref|ZP_07194043.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 185-1] gi|301304782|ref|ZP_07210888.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 124-1] gi|301327009|ref|ZP_07220296.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 78-1] gi|301647239|ref|ZP_07247058.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 146-1] gi|306813710|ref|ZP_07447891.1| hypothetical protein ECNC101_17397 [Escherichia coli NC101] gi|307137904|ref|ZP_07497260.1| hypothetical protein EcolH7_07197 [Escherichia coli H736] gi|307309979|ref|ZP_07589629.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli W] gi|309793260|ref|ZP_07687687.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 145-7] gi|312966805|ref|ZP_07781023.1| yrdC domain protein [Escherichia coli 2362-75] gi|331657314|ref|ZP_08358276.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli TA206] gi|331662678|ref|ZP_08363601.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli TA143] gi|331682752|ref|ZP_08383371.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli H299] gi|84027907|sp|P0AFR5|YCIO_ECOL6 RecName: Full=Uncharacterized protein yciO gi|84027908|sp|P0AFR4|YCIO_ECOLI RecName: Full=Uncharacterized protein yciO gi|84027909|sp|P0AFR6|YCIO_SHIFL RecName: Full=Uncharacterized protein yciO gi|85674890|dbj|BAA14801.2| conserved hypothetical protein [Escherichia coli str. K12 substr. W3110] gi|87081864|gb|AAC74349.2| predicted RNA binding protein [Escherichia coli str. K-12 substr. MG1655] gi|110343088|gb|ABG69325.1| probable translation factor YciO [Escherichia coli 536] gi|157066452|gb|ABV05707.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli HS] gi|157077840|gb|ABV17548.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli E24377A] gi|169755297|gb|ACA77996.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli ATCC 8739] gi|169888779|gb|ACB02486.1| conserved protein [Escherichia coli str. K-12 substr. DH10B] gi|187430512|gb|ACD09786.1| Sua5/YciO/YrdC/YwlC family protein [Shigella boydii CDC 3083-94] gi|188490575|gb|EDU65678.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli 53638] gi|189354813|gb|EDU73232.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4401] gi|190903293|gb|EDV63014.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli B7A] gi|192956752|gb|EDV87207.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli E110019] gi|194416711|gb|EDX32841.1| Sua5/YciO/YrdC/YwlC family protein [Shigella dysenteriae 1012] gi|209911766|dbj|BAG76840.1| conserved hypothetical protein [Escherichia coli SE11] gi|215264634|emb|CAS09005.1| predicted protein [Escherichia coli O127:H6 str. E2348/69] gi|218351570|emb|CAU97282.1| conserved hypothetical protein [Escherichia coli 55989] gi|218356583|emb|CAQ89206.1| conserved hypothetical protein [Escherichia fergusonii ATCC 35469] gi|218360587|emb|CAQ98145.1| conserved hypothetical protein [Escherichia coli IAI1] gi|218365021|emb|CAR02724.1| conserved hypothetical protein [Escherichia coli S88] gi|218369960|emb|CAR17734.1| conserved hypothetical protein [Escherichia coli IAI39] gi|218426821|emb|CAR07671.2| conserved hypothetical protein [Escherichia coli ED1a] gi|218431887|emb|CAR12772.1| conserved hypothetical protein [Escherichia coli UMN026] gi|222033071|emb|CAP75811.1| Uncharacterized protein yciO [Escherichia coli LF82] gi|238860471|gb|ACR62469.1| conserved protein [Escherichia coli BW2952] gi|242377044|emb|CAQ31768.1| conserved protein [Escherichia coli BL21(DE3)] gi|253324780|gb|ACT29382.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973247|gb|ACT38918.1| hypothetical protein ECB_01241 [Escherichia coli B str. REL606] gi|253977461|gb|ACT43131.1| hypothetical protein ECD_01241 [Escherichia coli BL21(DE3)] gi|254592255|gb|ACT71616.1| predicted RNA-binding protein [Escherichia coli O157:H7 str. TW14359] gi|257758762|dbj|BAI30259.1| conserved predicted protein [Escherichia coli O103:H2 str. 12009] gi|257764072|dbj|BAI35567.1| conserved predicted protein [Escherichia coli O111:H- str. 11128] gi|260449603|gb|ACX40025.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli DH1] gi|281178455|dbj|BAI54785.1| conserved hypothetical protein [Escherichia coli SE15] gi|291324447|gb|EFE63869.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli B088] gi|291427016|gb|EFF00043.1| hypothetical protein ECGG_00131 [Escherichia coli FVEC1412] gi|291434657|gb|EFF07630.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli B185] gi|291470119|gb|EFF12603.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli B354] gi|294493370|gb|ADE92126.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli IHE3034] gi|298277891|gb|EFI19405.1| hypothetical protein ECFG_00142 [Escherichia coli FVEC1302] gi|300301155|gb|EFJ57540.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 185-1] gi|300309296|gb|EFJ63816.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 200-1] gi|300317270|gb|EFJ67054.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 175-1] gi|300359989|gb|EFJ75859.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 198-1] gi|300399232|gb|EFJ82770.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 69-1] gi|300403901|gb|EFJ87439.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 84-1] gi|300408752|gb|EFJ92290.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 45-1] gi|300413469|gb|EFJ96779.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 115-1] gi|300417349|gb|EFK00660.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 182-1] gi|300448867|gb|EFK12487.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 116-1] gi|300455105|gb|EFK18598.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 21-1] gi|300464166|gb|EFK27659.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 187-1] gi|300524986|gb|EFK46055.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 119-7] gi|300527303|gb|EFK48365.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 107-1] gi|300839903|gb|EFK67663.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 124-1] gi|300846357|gb|EFK74117.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 78-1] gi|301074601|gb|EFK89407.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 146-1] gi|305852984|gb|EFM53429.1| hypothetical protein ECNC101_17397 [Escherichia coli NC101] gi|306909697|gb|EFN40191.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli W] gi|307553325|gb|ADN46100.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli ABU 83972] gi|307627159|gb|ADN71463.1| hypothetical protein UM146_10450 [Escherichia coli UM146] gi|308122847|gb|EFO60109.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 145-7] gi|309701565|emb|CBJ00872.1| conserved hypothetical protein [Escherichia coli ETEC H10407] gi|312288269|gb|EFR16171.1| yrdC domain protein [Escherichia coli 2362-75] gi|312945901|gb|ADR26728.1| hypothetical protein NRG857_06500 [Escherichia coli O83:H1 str. NRG 857C] gi|313649456|gb|EFS13887.1| yrdC domain protein [Shigella flexneri 2a str. 2457T] gi|315060518|gb|ADT74845.1| hypothetical protein ECW_m1359 [Escherichia coli W] gi|315135903|dbj|BAJ43062.1| hypothetical protein ECDH1ME8569_1206 [Escherichia coli DH1] gi|315254774|gb|EFU34742.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 85-1] gi|315289105|gb|EFU48503.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 110-3] gi|315294758|gb|EFU54101.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 153-1] gi|315297256|gb|EFU56536.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 16-3] gi|315619345|gb|EFU99889.1| yrdC domain protein [Escherichia coli 3431] gi|320181707|gb|EFW56618.1| YciO family [Shigella boydii ATCC 9905] gi|320189982|gb|EFW64634.1| YciO family [Escherichia coli O157:H7 str. EC1212] gi|320637161|gb|EFX06987.1| hypothetical protein ECO5101_20125 [Escherichia coli O157:H7 str. G5101] gi|320642527|gb|EFX11775.1| hypothetical protein ECO9389_21424 [Escherichia coli O157:H- str. 493-89] gi|320647880|gb|EFX16588.1| hypothetical protein ECO2687_09354 [Escherichia coli O157:H- str. H 2687] gi|320653482|gb|EFX21587.1| hypothetical protein ECO7815_06412 [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659182|gb|EFX26771.1| hypothetical protein ECO5905_15803 [Escherichia coli O55:H7 str. USDA 5905] gi|320663975|gb|EFX31162.1| hypothetical protein ECOSU61_13093 [Escherichia coli O157:H7 str. LSU-61] gi|323162372|gb|EFZ48227.1| yrdC domain protein [Escherichia coli E128010] gi|323168240|gb|EFZ53925.1| yrdC domain protein [Shigella sonnei 53G] gi|323172377|gb|EFZ58014.1| yrdC domain protein [Escherichia coli LT-68] gi|323179781|gb|EFZ65342.1| yrdC domain protein [Escherichia coli 1180] gi|323185574|gb|EFZ70935.1| yrdC domain protein [Escherichia coli 1357] gi|323378919|gb|ADX51187.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli KO11] gi|323937588|gb|EGB33856.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli E1520] gi|323942381|gb|EGB38551.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli E482] gi|323947452|gb|EGB43456.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli H120] gi|323949130|gb|EGB45022.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli H252] gi|323953862|gb|EGB49663.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli H263] gi|323962567|gb|EGB58147.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli H489] gi|323973493|gb|EGB68679.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli TA007] gi|324006123|gb|EGB75342.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 57-2] gi|324011322|gb|EGB80541.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 60-1] gi|324018953|gb|EGB88172.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 117-3] gi|324113139|gb|EGC07114.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia fergusonii B253] gi|324117540|gb|EGC11446.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli E1167] gi|325497459|gb|EGC95318.1| hypothetical protein ECD227_1556 [Escherichia fergusonii ECD227] gi|326341073|gb|EGD64866.1| YciO family [Escherichia coli O157:H7 str. 1125] gi|331055562|gb|EGI27571.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli TA206] gi|331061100|gb|EGI33064.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli TA143] gi|331080383|gb|EGI51562.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli H299] gi|332091657|gb|EGI96737.1| yrdC domain protein [Shigella boydii 5216-82] gi|332094838|gb|EGI99882.1| yrdC domain protein [Shigella boydii 3594-74] gi|332098121|gb|EGJ03094.1| yrdC domain protein [Shigella dysenteriae 155-74] gi|332342859|gb|AEE56193.1| conserved hypothetical protein [Escherichia coli UMNK88] gi|332757919|gb|EGJ88246.1| yrdC domain protein [Shigella flexneri 4343-70] gi|332759350|gb|EGJ89658.1| yrdC domain protein [Shigella flexneri 2747-71] gi|332760362|gb|EGJ90652.1| yrdC domain protein [Shigella flexneri K-671] gi|332767502|gb|EGJ97696.1| yrdC domain protein [Shigella flexneri 2930-71] gi|333004582|gb|EGK24106.1| yrdC domain protein [Shigella flexneri VA-6] gi|333005653|gb|EGK25171.1| yrdC domain protein [Shigella flexneri K-218] gi|333019096|gb|EGK38386.1| yrdC domain protein [Shigella flexneri K-304] Length = 206 Score = 180 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 44/188 (23%), Positives = 78/188 (41%), Gaps = 4/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A E + G I PT++ Y L + A+ R+ I++ P + D+S Sbjct: 14 QRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + ++ VD ++ L K PG T +L L KT RVP + L Sbjct: 74 ELSTYSFVDNVAFRLMKNNTPGNYTFILKGTKEVP-RRLLQEKRKTIGMRVPSNPIAQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G P+ S G + + + K++ LII GG +T++++ + Sbjct: 133 LEALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGGYLGQ-KPTTVIDLTDDT 191 Query: 188 KVRILRPG 195 V ++R G Sbjct: 192 PV-VVREG 198 >gi|325274080|ref|ZP_08140224.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas sp. TJI-51] gi|324100791|gb|EGB98493.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas sp. TJI-51] Length = 201 Score = 180 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 45/189 (23%), Positives = 77/189 (40%), Gaps = 4/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +R+A E + G + PT++ Y L + AI R+ ++ + D+S Sbjct: 6 PRLIRQAVEIIRKGGVVVYPTDSAYALGCQIGDKAAIERVRRLRGLDKTHNFTLMCCDMS 65 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD + L K PGP T +L+ L +T RVP T L Sbjct: 66 QLGLYAKVDTGTFRLLKAHVPGPYTFILNGTREVP-RLLLHEKRRTIGLRVPDHAITLAL 124 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL S G + + + + L+IDGG + STI+++ ++ Sbjct: 125 LAELGEPLMSVSLILPGDNEPMTDPYEIRERLEHHVDLVIDGGYGDL-KASTIIDLSGDE 183 Query: 188 KVRILRPGG 196 ++R G Sbjct: 184 P-ELIREGC 191 >gi|223983284|ref|ZP_03633477.1| hypothetical protein HOLDEFILI_00757 [Holdemania filiformis DSM 12042] gi|223964777|gb|EEF69096.1| hypothetical protein HOLDEFILI_00757 [Holdemania filiformis DSM 12042] Length = 201 Score = 180 bits (457), Expect = 3e-43, Method: Composition-based stats. Identities = 67/207 (32%), Positives = 103/207 (49%), Gaps = 7/207 (3%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ +T ++ + E L+ G +A PT+TVYGLAV AI ++ E K+RP P Sbjct: 1 METQRLTKKDS-AQIVEILNRGGVVAFPTDTVYGLAVRYDLKEAILKMKEAKQRPETKPF 59 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 VS + +++ A D S L + PG LTLV +I L T T R+P Sbjct: 60 PMMVSSKAQIERVAVTDARSQKLIDQWMPGALTLVFKKRP--EIDELVTNGFPTIGIRMP 117 Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 F ++I G PL +PSAN SGQ S T + +L + I ++ G S ST Sbjct: 118 DDDFVLEIINRVGVPLLVPSANLSGQPSCTTSEEVLK-QLDGRIDAVVLGE-SGASTAST 175 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAI 206 + + +++ILR G +++E L+ +I Sbjct: 176 VCD-TTGDELKILRQGPIKLEDLEASI 201 >gi|296159003|ref|ZP_06841831.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. Ch1-1] gi|295890878|gb|EFG70668.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. Ch1-1] Length = 211 Score = 180 bits (457), Expect = 3e-43, Method: Composition-based stats. Identities = 50/189 (26%), Positives = 82/189 (43%), Gaps = 3/189 (1%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A + + G +A+PT++ Y LA + A+ RL I+ L V D+S Sbjct: 14 PRLVKQAVQIIKDGGVVALPTDSSYALACHLDDKEAVERLRRIRGLDEKQLLSLLVRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + A VD L K PGP VL LS + KT RVP T + Sbjct: 74 ELSNFAMVDNRQYRLIKSVTPGPYVFVLQATKEVP-RRLSHPSRKTIGLRVPDHAITLAI 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL + G+ N + + + K++ L+IDGG + ST++++ + Sbjct: 133 LEELGQPLLGSTLIMPGETQPLNDPEEIRARLEKQLDLVIDGGPC-VCEPSTVIDLTGAE 191 Query: 188 KVRILRPGG 196 V + G Sbjct: 192 PVLVRAGRG 200 >gi|104782899|ref|YP_609397.1| hypothetical protein PSEEN3903 [Pseudomonas entomophila L48] gi|95111886|emb|CAK16610.1| conserved hypothetical protein; Sua5/YciO/YrdC/YwlC family protein [Pseudomonas entomophila L48] Length = 221 Score = 180 bits (457), Expect = 3e-43, Method: Composition-based stats. Identities = 43/190 (22%), Positives = 82/190 (43%), Gaps = 6/190 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +++A E + G + PT++ Y + + AI R+ +++ + D+S Sbjct: 26 ARLIKQAVEIIRKGGVVVYPTDSAYAMGCQIGDKNAIERVRRLRQLDKNHNFTLLCCDLS 85 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVP-CGFTKK 126 + A +D + L K PGP T +L+ +T ++ L +T RVP Sbjct: 86 QMGTFAKIDTATFRLLKAHIPGPYTFILN--ATREVPRLLMHEKRRTIGLRVPSNPIVLA 143 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+E G PL S G + + + + LIIDGG + ST++++ + Sbjct: 144 LLEELGEPLMSVSLILPGDEEPMTDPYEIRQRLEHHVDLIIDGGFGDL-KASTVIDLSGD 202 Query: 187 KKVRILRPGG 196 + ++R G Sbjct: 203 EPA-LIREGC 211 >gi|302536945|ref|ZP_07289287.1| Sua5/YciO/YrdC/YwlC [Streptomyces sp. C] gi|302445840|gb|EFL17656.1| Sua5/YciO/YrdC/YwlC [Streptomyces sp. C] Length = 215 Score = 180 bits (457), Expect = 3e-43, Method: Composition-based stats. Identities = 50/204 (24%), Positives = 83/204 (40%), Gaps = 6/204 (2%) Query: 5 SITD-SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 TD LR+A + G + +PT+T+YG+ D+ + A+ L K R P Sbjct: 9 DATDRKTGLREAASAVRRGELVVLPTDTLYGIGADAFSAEAVGDLLAAKGRGRNMPTPVL 68 Query: 64 VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 + + + + L FWPG LTLV + + T R+P Sbjct: 69 IGSPNTLHGLVTDFSEQAWELVDAFWPGGLTLVAKHQPS--LAWDLGETRGTVAVRMPLH 126 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 + T P+A+ SAN SG + + + + + +DGG + S+IV+ Sbjct: 127 PVAIELLTEVGPMAVSSANLSGHPAPADC-DAAREMLGDSVSVYLDGGPTPSTEPSSIVD 185 Query: 183 VQCEKKVRILRPGGLEIETLKRAI 206 V + V +LR G L L+ + Sbjct: 186 VTGKVPV-LLREGALSAAQLREVV 208 >gi|262402041|ref|ZP_06078605.1| YrdC family protein [Vibrio sp. RC586] gi|262351687|gb|EEZ00819.1| YrdC family protein [Vibrio sp. RC586] Length = 185 Score = 180 bits (457), Expect = 3e-43, Method: Composition-based stats. Identities = 53/190 (27%), Positives = 88/190 (46%), Gaps = 10/190 (5%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + L++A L +G IA PTE V+GL D N A+ RL IK+RP +I ++ Sbjct: 2 DNLQQAVHVLQSGGVIAYPTEGVFGLGCDPDNQAAMLRLLAIKQRPIEKGVILIAANYEQ 61 Query: 70 VKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 ++ + D L+ WP PLT V+ ++ D T RV + Sbjct: 62 LRPYIDEDQLTEQQLLQVLASWPAPLTWVMP--ASVDTPSWVRGQFDTVAVRVSNHPLVQ 119 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +L +G PL SAN SGQ + T + ++ + + +I +++G S S I + + Sbjct: 120 QLCLAFGKPLTSTSANLSGQPACTTRQEVV-AQLGNQIETVLEGETSGRCGPSEIRDARS 178 Query: 186 EKKVRILRPG 195 +++LR G Sbjct: 179 ---LQVLRQG 185 >gi|333007604|gb|EGK27082.1| yrdC domain protein [Shigella flexneri K-272] gi|333019538|gb|EGK38818.1| yrdC domain protein [Shigella flexneri K-227] Length = 206 Score = 180 bits (457), Expect = 3e-43, Method: Composition-based stats. Identities = 44/188 (23%), Positives = 78/188 (41%), Gaps = 4/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A E + G I PT++ Y L + A+ R+ I++ P + D+S Sbjct: 14 QRLINQAVEIVRKGGVIVYPTDSGYALGCKVEDKNAMERICRIRQLPDGHNFTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + ++ VD ++ L K PG T +L L KT RVP + L Sbjct: 74 ELSTYSFVDNVAFRLMKNNTPGSYTFILKGTKEVP-RRLLQEKRKTIGMRVPSNPIAQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G P+ S G + + + K++ LII GG +T++++ + Sbjct: 133 LEALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGGYLGQ-KPTTVIDLTDDT 191 Query: 188 KVRILRPG 195 V ++R G Sbjct: 192 PV-VVREG 198 >gi|315604643|ref|ZP_07879706.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 180 str. F0310] gi|315313655|gb|EFU61709.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 180 str. F0310] Length = 224 Score = 180 bits (457), Expect = 3e-43, Method: Composition-based stats. Identities = 58/212 (27%), Positives = 95/212 (44%), Gaps = 7/212 (3%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 I AL +A L G + +PT+TVYG+ D+ N A+ + K R P Sbjct: 12 IAPTVRDEALARAAAVLSNGGILVVPTDTVYGIGCDAANHEAVAEVLAAKGRGRQMPPPV 71 Query: 63 HVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 V+ + + V + LA+ FWPG LTL+L TA T R+P Sbjct: 72 LVASVDAIDTLCVDVPDAARALARAFWPGALTLILRARPDLGWDLGQTAG--TIGVRMPN 129 Query: 122 GFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 +L++ +G P+A+ SAN +GQ T V+ + +S + +DGG ++ S+I Sbjct: 130 QDALLRLLKEFG-PMAVTSANLTGQPPATTVEQAV-ASFGARVGAYLDGGPTRASTASSI 187 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEY 212 ++ + R +R G + +E L V + Sbjct: 188 IDC-AHGEPRAIRLGAISLEELSSRAGVSIAP 218 >gi|307354113|ref|YP_003895164.1| Sua5/YciO/YrdC/YwlC family protein [Methanoplanus petrolearius DSM 11571] gi|307157346|gb|ADN36726.1| Sua5/YciO/YrdC/YwlC family protein [Methanoplanus petrolearius DSM 11571] Length = 192 Score = 179 bits (456), Expect = 4e-43, Method: Composition-based stats. Identities = 65/197 (32%), Positives = 92/197 (46%), Gaps = 13/197 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A L I PTETVYGL D+ + A+ RLYE K RP P+ VSD+ M+ Sbjct: 5 IDEAVRVLRRDGIIVYPTETVYGLGCDALSDEAVSRLYEAKCRPLSKPVSIAVSDMEMLH 64 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 A +D K F PGP+T+++ + I P+ T R+P ++IE Sbjct: 65 AVAIIDEAEEKFIKRFLPGPVTVIV--RAKKCIPPVLTGGTGLIGIRMPDNDIAIEIIEK 122 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 +G P+ SAN SG IS V + IID G G ST+V++ K VR Sbjct: 123 FGSPITSTSANLSGDISPVTVSQV-----NVIYDHIIDSGTLP-GNPSTVVDLVNRKIVR 176 Query: 191 ILRPGGLEIETLKRAIS 207 G +IE + I+ Sbjct: 177 ----AGAQIEEVASFIA 189 >gi|21223722|ref|NP_629501.1| hypothetical protein SCO5362 [Streptomyces coelicolor A3(2)] gi|256785185|ref|ZP_05523616.1| hypothetical protein SlivT_11905 [Streptomyces lividans TK24] gi|289769078|ref|ZP_06528456.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces lividans TK24] gi|8568784|emb|CAB94533.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)] gi|289699277|gb|EFD66706.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces lividans TK24] Length = 215 Score = 179 bits (456), Expect = 4e-43, Method: Composition-based stats. Identities = 52/198 (26%), Positives = 85/198 (42%), Gaps = 5/198 (2%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 LR+A + G + +PT+TVYG+ D+ A+ L E K R P + + Sbjct: 15 TGLREAASAVRRGELVVLPTDTVYGIGADAFAAEAVGDLLEAKGRGRNMPSPVLIGSPNT 74 Query: 70 VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128 + ++ L FWPG LTLV + T T R+P + Sbjct: 75 LHGLVTDFSEMAWELVDAFWPGALTLVAKHQPSLQWDLGET--RGTVAVRMPLHPVAIEL 132 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 T P+A+ SAN +G + + + + + +DGG + + S+IV+V E Sbjct: 133 LTEVGPMAVSSANLTGHPAPEDC-DAAQQMLGDSVSVYLDGGPTPGIVPSSIVDVTREVP 191 Query: 189 VRILRPGGLEIETLKRAI 206 V +LR G L E L++ + Sbjct: 192 V-LLRAGALSAEELRKVV 208 >gi|124007775|ref|ZP_01692477.1| Sua5/YciO/YrdC/YwlC family protein [Microscilla marina ATCC 23134] gi|123986721|gb|EAY26502.1| Sua5/YciO/YrdC/YwlC family protein [Microscilla marina ATCC 23134] Length = 209 Score = 179 bits (456), Expect = 4e-43, Method: Composition-based stats. Identities = 49/196 (25%), Positives = 89/196 (45%), Gaps = 8/196 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM--NPLICHVS 65 + + + E L +G I PT+TVYGL D N A+ ++ +IKK L + Sbjct: 14 EMRKISQVVECLRSGGVIIYPTDTVYGLGCDIHNQKAVEKICQIKKINPKKRKNLSFICN 73 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125 D+S + ++A + + L K PGP T +L+ ++ + + + K R+P Sbjct: 74 DLSHIAEYARIGNATFKLMKKALPGPYTFILET--SSRVPKILNISKKNVGIRIPDNNIA 131 Query: 126 KLI-ETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 +LI + G+P+ S + + + ++ L+IDGG + STI++ Sbjct: 132 RLIVKELGNPIITSSVLAEDEVVKYLTDPEDIYEQYKHKVDLVIDGGNG-SNVGSTIIDC 190 Query: 184 QCEKKVRILRPGGLEI 199 + V +LR G +I Sbjct: 191 SDDN-VTVLRQGAGDI 205 >gi|15801912|ref|NP_287932.1| hypothetical protein Z2543 [Escherichia coli O157:H7 EDL933] gi|24112666|ref|NP_707176.1| hypothetical protein SF1270 [Shigella flexneri 2a str. 301] gi|26247596|ref|NP_753636.1| hypothetical protein c1732 [Escherichia coli CFT073] gi|30062790|ref|NP_836961.1| hypothetical protein S1355 [Shigella flexneri 2a str. 2457T] gi|74312363|ref|YP_310782.1| hypothetical protein SSON_1876 [Shigella sonnei Ss046] gi|82544279|ref|YP_408226.1| hypothetical protein SBO_1799 [Shigella boydii Sb227] gi|91210558|ref|YP_540544.1| hypothetical protein UTI89_C1535 [Escherichia coli UTI89] gi|110805270|ref|YP_688790.1| hypothetical protein SFV_1280 [Shigella flexneri 5 str. 8401] gi|117623527|ref|YP_852440.1| hypothetical protein APECO1_427 [Escherichia coli APEC O1] gi|162139712|ref|NP_309866.3| hypothetical protein ECs1839 [Escherichia coli O157:H7 str. Sakai] gi|170681810|ref|YP_001743920.1| hypothetical protein EcSMS35_1866 [Escherichia coli SMS-3-5] gi|187776059|ref|ZP_02800082.2| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4196] gi|188025120|ref|ZP_02776177.2| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4113] gi|189010692|ref|ZP_02808776.2| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4076] gi|189403568|ref|ZP_02796272.2| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4486] gi|189404340|ref|ZP_02788593.2| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4501] gi|189405385|ref|ZP_02815073.2| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC869] gi|189406137|ref|ZP_02826620.2| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC508] gi|191171102|ref|ZP_03032653.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli F11] gi|193062588|ref|ZP_03043682.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli E22] gi|194425821|ref|ZP_03058377.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli B171] gi|194436951|ref|ZP_03069050.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli 101-1] gi|208810838|ref|ZP_03252671.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4206] gi|208815519|ref|ZP_03256698.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4045] gi|208819462|ref|ZP_03259782.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4042] gi|209400954|ref|YP_002270321.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4115] gi|217329124|ref|ZP_03445204.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. TW14588] gi|227886305|ref|ZP_04004110.1| RNA binding protein [Escherichia coli 83972] gi|237705290|ref|ZP_04535771.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|291282354|ref|YP_003499172.1| hypothetical protein G2583_1606 [Escherichia coli O55:H7 str. CB9615] gi|331641825|ref|ZP_08342960.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli H736] gi|331646588|ref|ZP_08347691.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli M605] gi|331652304|ref|ZP_08353323.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli M718] gi|331672792|ref|ZP_08373578.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli TA280] gi|331677045|ref|ZP_08377741.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli H591] gi|332279543|ref|ZP_08391956.1| yciO [Shigella sp. D9] gi|12515530|gb|AAG56548.1|AE005380_7 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] gi|26107998|gb|AAN80198.1|AE016760_57 Protein yciO [Escherichia coli CFT073] gi|13361304|dbj|BAB35262.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|24051580|gb|AAN42883.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] gi|30041038|gb|AAP16768.1| hypothetical protein S1355 [Shigella flexneri 2a str. 2457T] gi|73855840|gb|AAZ88547.1| conserved hypothetical protein [Shigella sonnei Ss046] gi|81245690|gb|ABB66398.1| conserved hypothetical protein [Shigella boydii Sb227] gi|91072132|gb|ABE07013.1| hypothetical protein UTI89_C1535 [Escherichia coli UTI89] gi|110614818|gb|ABF03485.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] gi|115512651|gb|ABJ00726.1| conserved hypothetical protein [Escherichia coli APEC O1] gi|170519528|gb|ACB17706.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli SMS-3-5] gi|187769320|gb|EDU33164.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4196] gi|188014770|gb|EDU52892.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4113] gi|188998955|gb|EDU67941.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4076] gi|189359972|gb|EDU78391.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4486] gi|189366283|gb|EDU84699.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4501] gi|189370440|gb|EDU88856.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC869] gi|189376257|gb|EDU94673.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC508] gi|190908834|gb|EDV68422.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli F11] gi|192931710|gb|EDV84310.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli E22] gi|194415876|gb|EDX32142.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli B171] gi|194423934|gb|EDX39922.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli 101-1] gi|208724344|gb|EDZ74052.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4206] gi|208732167|gb|EDZ80855.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4045] gi|208739585|gb|EDZ87267.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4042] gi|209162354|gb|ACI39787.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4115] gi|209772038|gb|ACI84331.1| hypothetical protein ECs1839 [Escherichia coli] gi|209772040|gb|ACI84332.1| hypothetical protein ECs1839 [Escherichia coli] gi|209772042|gb|ACI84333.1| hypothetical protein ECs1839 [Escherichia coli] gi|209772044|gb|ACI84334.1| hypothetical protein ECs1839 [Escherichia coli] gi|209772046|gb|ACI84335.1| hypothetical protein ECs1839 [Escherichia coli] gi|217317563|gb|EEC25991.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. TW14588] gi|226900047|gb|EEH86306.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|227836509|gb|EEJ46975.1| RNA binding protein [Escherichia coli 83972] gi|281600689|gb|ADA73673.1| hypothetical protein SFxv_1441 [Shigella flexneri 2002017] gi|290762227|gb|ADD56188.1| hypothetical protein G2583_1606 [Escherichia coli O55:H7 str. CB9615] gi|320176681|gb|EFW51719.1| YciO family [Shigella dysenteriae CDC 74-1112] gi|320187505|gb|EFW62191.1| YciO family [Shigella flexneri CDC 796-83] gi|320195720|gb|EFW70345.1| YciO family [Escherichia coli WV_060327] gi|320199302|gb|EFW73893.1| YciO family [Escherichia coli EC4100B] gi|326343314|gb|EGD67081.1| YciO family [Escherichia coli O157:H7 str. 1044] gi|330911130|gb|EGH39640.1| YciO family [Escherichia coli AA86] gi|331038623|gb|EGI10843.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli H736] gi|331045340|gb|EGI17467.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli M605] gi|331050582|gb|EGI22640.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli M718] gi|331070013|gb|EGI41382.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli TA280] gi|331075734|gb|EGI47032.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli H591] gi|332101895|gb|EGJ05241.1| yciO [Shigella sp. D9] Length = 218 Score = 179 bits (456), Expect = 4e-43, Method: Composition-based stats. Identities = 44/188 (23%), Positives = 78/188 (41%), Gaps = 4/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A E + G I PT++ Y L + A+ R+ I++ P + D+S Sbjct: 26 QRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLS 85 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + ++ VD ++ L K PG T +L L KT RVP + L Sbjct: 86 ELSTYSFVDNVAFRLMKNNTPGNYTFILKGTKEVP-RRLLQEKRKTIGMRVPSNPIAQAL 144 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G P+ S G + + + K++ LII GG +T++++ + Sbjct: 145 LEALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGGYLGQ-KPTTVIDLTDDT 203 Query: 188 KVRILRPG 195 V ++R G Sbjct: 204 PV-VVREG 210 >gi|15608441|ref|NP_215817.1| hypothetical protein Rv1301 [Mycobacterium tuberculosis H37Rv] gi|15840751|ref|NP_335788.1| hypothetical protein MT1340 [Mycobacterium tuberculosis CDC1551] gi|148661089|ref|YP_001282612.1| hypothetical protein MRA_1309 [Mycobacterium tuberculosis H37Ra] gi|148822519|ref|YP_001287273.1| hypothetical protein TBFG_11328 [Mycobacterium tuberculosis F11] gi|167969628|ref|ZP_02551905.1| hypothetical protein MtubH3_17041 [Mycobacterium tuberculosis H37Ra] gi|215403143|ref|ZP_03415324.1| hypothetical protein Mtub0_05486 [Mycobacterium tuberculosis 02_1987] gi|215410940|ref|ZP_03419748.1| hypothetical protein Mtub9_06325 [Mycobacterium tuberculosis 94_M4241A] gi|215445479|ref|ZP_03432231.1| hypothetical protein MtubT_05893 [Mycobacterium tuberculosis T85] gi|218753009|ref|ZP_03531805.1| hypothetical protein MtubG1_05995 [Mycobacterium tuberculosis GM 1503] gi|253799653|ref|YP_003032654.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis KZN 1435] gi|254231559|ref|ZP_04924886.1| conserved hypothetical protein [Mycobacterium tuberculosis C] gi|254364198|ref|ZP_04980244.1| conserved hypothetical protein [Mycobacterium tuberculosis str. Haarlem] gi|254550309|ref|ZP_05140756.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|289554909|ref|ZP_06444119.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605] gi|289745047|ref|ZP_06504425.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|289757401|ref|ZP_06516779.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis T85] gi|289761456|ref|ZP_06520834.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|297633853|ref|ZP_06951633.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis KZN 4207] gi|297730840|ref|ZP_06959958.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis KZN R506] gi|298524805|ref|ZP_07012214.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|306775473|ref|ZP_07413810.1| hypothetical protein TMAG_01936 [Mycobacterium tuberculosis SUMu001] gi|306781616|ref|ZP_07419953.1| hypothetical protein TMBG_01305 [Mycobacterium tuberculosis SUMu002] gi|306784025|ref|ZP_07422347.1| hypothetical protein TMCG_00932 [Mycobacterium tuberculosis SUMu003] gi|306788388|ref|ZP_07426710.1| hypothetical protein TMDG_01180 [Mycobacterium tuberculosis SUMu004] gi|306792715|ref|ZP_07431017.1| hypothetical protein TMEG_01198 [Mycobacterium tuberculosis SUMu005] gi|306797121|ref|ZP_07435423.1| hypothetical protein TMFG_02493 [Mycobacterium tuberculosis SUMu006] gi|306803001|ref|ZP_07439669.1| hypothetical protein TMHG_00486 [Mycobacterium tuberculosis SUMu008] gi|306807191|ref|ZP_07443859.1| hypothetical protein TMGG_01864 [Mycobacterium tuberculosis SUMu007] gi|306967390|ref|ZP_07480051.1| hypothetical protein TMIG_02976 [Mycobacterium tuberculosis SUMu009] gi|306971582|ref|ZP_07484243.1| hypothetical protein TMJG_03944 [Mycobacterium tuberculosis SUMu010] gi|307079296|ref|ZP_07488466.1| hypothetical protein TMKG_01801 [Mycobacterium tuberculosis SUMu011] gi|307083865|ref|ZP_07492978.1| hypothetical protein TMLG_02639 [Mycobacterium tuberculosis SUMu012] gi|313658172|ref|ZP_07815052.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis KZN V2475] gi|1722959|sp|Q10618|Y1301_MYCTU RecName: Full=Uncharacterized protein Rv1301/MT1340 gi|1322425|emb|CAA97734.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv] gi|13880943|gb|AAK45602.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis CDC1551] gi|124600618|gb|EAY59628.1| conserved hypothetical protein [Mycobacterium tuberculosis C] gi|134149712|gb|EBA41757.1| conserved hypothetical protein [Mycobacterium tuberculosis str. Haarlem] gi|148505241|gb|ABQ73050.1| conserved hypothetical protein [Mycobacterium tuberculosis H37Ra] gi|148721046|gb|ABR05671.1| conserved hypothetical protein [Mycobacterium tuberculosis F11] gi|253321156|gb|ACT25759.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis KZN 1435] gi|289439541|gb|EFD22034.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605] gi|289685575|gb|EFD53063.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|289708962|gb|EFD72978.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|289712965|gb|EFD76977.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis T85] gi|298494599|gb|EFI29893.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|308216021|gb|EFO75420.1| hypothetical protein TMAG_01936 [Mycobacterium tuberculosis SUMu001] gi|308325578|gb|EFP14429.1| hypothetical protein TMBG_01305 [Mycobacterium tuberculosis SUMu002] gi|308331258|gb|EFP20109.1| hypothetical protein TMCG_00932 [Mycobacterium tuberculosis SUMu003] gi|308335074|gb|EFP23925.1| hypothetical protein TMDG_01180 [Mycobacterium tuberculosis SUMu004] gi|308338882|gb|EFP27733.1| hypothetical protein TMEG_01198 [Mycobacterium tuberculosis SUMu005] gi|308342496|gb|EFP31347.1| hypothetical protein TMFG_02493 [Mycobacterium tuberculosis SUMu006] gi|308346430|gb|EFP35281.1| hypothetical protein TMGG_01864 [Mycobacterium tuberculosis SUMu007] gi|308350301|gb|EFP39152.1| hypothetical protein TMHG_00486 [Mycobacterium tuberculosis SUMu008] gi|308355002|gb|EFP43853.1| hypothetical protein TMIG_02976 [Mycobacterium tuberculosis SUMu009] gi|308358950|gb|EFP47801.1| hypothetical protein TMJG_03944 [Mycobacterium tuberculosis SUMu010] gi|308362832|gb|EFP51683.1| hypothetical protein TMKG_01801 [Mycobacterium tuberculosis SUMu011] gi|308366498|gb|EFP55349.1| hypothetical protein TMLG_02639 [Mycobacterium tuberculosis SUMu012] gi|323720258|gb|EGB29357.1| hypothetical protein TMMG_01997 [Mycobacterium tuberculosis CDC1551A] gi|326902923|gb|EGE49856.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis W-148] gi|328459399|gb|AEB04822.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 4207] Length = 217 Score = 179 bits (456), Expect = 4e-43, Method: Composition-based stats. Identities = 51/202 (25%), Positives = 88/202 (43%), Gaps = 5/202 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S + A + AG + +PT+TVYG+ D+ + +A+ L K R P+ V Sbjct: 14 SRGIVSAVGAIKAGQLVVMPTDTVYGIGADAFDSSAVAALLSAKGRGRDMPVGVLVGSWH 73 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 ++ S+ + L + FWPG L+LV+ + T R+P Sbjct: 74 TIEGLVYSMPDGARELIRAFWPGALSLVVVQAPSLQW--DLGDAHGTVMLRMPLHPVAIE 131 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + P+A+ SAN SG + + S + + + +D G S+ STIV++ Sbjct: 132 LLREVGPMAVSSANISGHPPPVDAEQA-RSQLGDHVAVYLDAGPSEQQAGSTIVDLTGAT 190 Query: 188 KVRILRPGGLEIETLKRAISVE 209 R+LRPG + E + + V+ Sbjct: 191 P-RVLRPGPVSTERIAEVLGVD 211 >gi|213964492|ref|ZP_03392692.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium amycolatum SK46] gi|213952685|gb|EEB64067.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium amycolatum SK46] Length = 218 Score = 179 bits (456), Expect = 4e-43, Method: Composition-based stats. Identities = 63/199 (31%), Positives = 93/199 (46%), Gaps = 9/199 (4%) Query: 2 QIMSI-TDSN---ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 +IM TD N A+ A + + AG + +PT+TVYGL D+ + A+ L K R Sbjct: 3 RIMDCSTDENRERAIAAAVDAVKAGRLVVMPTDTVYGLGCDAFDNQAVASLLRAKHRGPD 62 Query: 58 NPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 P+ V + ++ P + L + FWPG L+LV++ + + TA T Sbjct: 63 MPVPVLVGSWNTIEGLVREYSPAARTLVEAFWPGGLSLVVNQAPSLPWNLGDTAG--TVM 120 Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P I P+A+ SAN SGQ TN + E + +DGG + IG Sbjct: 121 LRMPLHPIAIEILRRTGPMAVSSANISGQAPATNAVRA-KQMLGGEAAVYVDGGEATIGT 179 Query: 177 ESTIVNVQCEKKVRILRPG 195 STIV++ RILR G Sbjct: 180 PSTIVDISTPVP-RILREG 197 >gi|240169513|ref|ZP_04748172.1| hypothetical protein MkanA1_09381 [Mycobacterium kansasii ATCC 12478] Length = 219 Score = 179 bits (455), Expect = 5e-43, Method: Composition-based stats. Identities = 57/207 (27%), Positives = 93/207 (44%), Gaps = 5/207 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S+ + A L AG + +PT+TVYG+A D+ + +A+ L K R P+ V Sbjct: 16 SSGITAAVAALKAGRLVVMPTDTVYGVAADAFDRSAVDALLAAKGRGRDMPVGVLVGSWH 75 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 ++ SV P + L + FWPG L+LV+ + T R+P Sbjct: 76 TIEGLVYSVPPGARELIRAFWPGALSLVVVQAPSLQW--DLGDARGTVMLRMPLHPVAIE 133 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + PLA+ SAN SGQ + + + + + +DGG + STIV++ Sbjct: 134 LLREVGPLAVSSANVSGQPAAVDAGEA-RRQLGDRVDVYLDGGPAAQQAASTIVDLTGAT 192 Query: 188 KVRILRPGGLEIETLKRAISVELEYCV 214 RILRPG + E + + V++ + Sbjct: 193 P-RILRPGPVSAERIAEVLGVDVATLI 218 >gi|327329872|gb|EGE71626.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL097PA1] Length = 300 Score = 179 bits (455), Expect = 5e-43, Method: Composition-based stats. Identities = 61/199 (30%), Positives = 99/199 (49%), Gaps = 6/199 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +AL +A + + G I +PT+TVYG+ D+ N A++RL K+R P VSD Sbjct: 58 EDALEQAADAIADGECIVLPTDTVYGIGADALNALAVQRLLNAKERGRDMPPPVLVSDSV 117 Query: 69 MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKK 126 + P + LA+ +WPG LTLVL + + T T RVP T++ Sbjct: 118 ALPALCQHIPAGAKALAEKYWPGGLTLVLRAQESLGMDLGETNG--TLAVRVPDQDQTRE 175 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+ G PLA+ SAN+SG + + + + E+ + +D G S++G STI++ Sbjct: 176 LLRMTG-PLAVSSANKSGHPAALTAQEA-ADQLGVEVAVYLDAGPSRVGESSTIIDFVST 233 Query: 187 KKVRILRPGGLEIETLKRA 205 +++R G L +E + Sbjct: 234 TDGKVVRQGALSLEAIHEV 252 >gi|312129970|ref|YP_003997310.1| translation factor sua5 [Leadbetterella byssophila DSM 17132] gi|311906516|gb|ADQ16957.1| translation factor SUA5 [Leadbetterella byssophila DSM 17132] Length = 205 Score = 179 bits (455), Expect = 5e-43, Method: Composition-based stats. Identities = 53/190 (27%), Positives = 83/190 (43%), Gaps = 5/190 (2%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSD 66 D +++ E L G I PT+TVY + +S + A+ +L +IK +P N D Sbjct: 14 DMRKIKQVVECLMDGGIIIYPTDTVYSMGCNSYHNKAVEKLCKIKGIKPNQNKFSIVCHD 73 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-K 125 +S + +A V + K + PGP T +L ST ++ L + KT RVP + Sbjct: 74 LSDIATYAKVSNEAFRTMKQYLPGPYTFILP--STNELPKLLQTSRKTIGIRVPDHMIPQ 131 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 LI+ G P+ S N ++ +IIDGG I + STIV+ Sbjct: 132 TLIKELGRPIITTSVKYDDIREYPNEIEVIYEENMYLADIIIDGGWCGI-VPSTIVDCTD 190 Query: 186 EKKVRILRPG 195 ++R G Sbjct: 191 PDHFEVIREG 200 >gi|91784220|ref|YP_559426.1| Sua5/YciO/YrdC/YwlC family translation factor [Burkholderia xenovorans LB400] gi|91688174|gb|ABE31374.1| Sua5/YciO/YrdC/YwlC family translation factor [Burkholderia xenovorans LB400] Length = 211 Score = 179 bits (455), Expect = 5e-43, Method: Composition-based stats. Identities = 50/189 (26%), Positives = 82/189 (43%), Gaps = 3/189 (1%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A + + G +A+PT++ Y LA + A+ RL I+ L V D+S Sbjct: 14 PRLVKQAVQIIKDGGVVALPTDSSYALACHLDDKDAVERLRRIRGLDEKQLLSLLVRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + A VD L K PGP VL LS + KT RVP T + Sbjct: 74 ELSNFAMVDNRQYRLIKSVTPGPYVFVLQATKEVP-RRLSHPSRKTIGLRVPDHAITLAI 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL + G+ N + + + K++ L+IDGG + ST++++ + Sbjct: 133 LEELGQPLLGSTLIMPGETQPLNDPEEIRARLEKQLDLVIDGGPC-VCEPSTVIDLTGAE 191 Query: 188 KVRILRPGG 196 V + G Sbjct: 192 PVLVRAGRG 200 >gi|312883596|ref|ZP_07743321.1| YrdC family protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309368819|gb|EFP96346.1| YrdC family protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 206 Score = 179 bits (455), Expect = 5e-43, Method: Composition-based stats. Identities = 44/196 (22%), Positives = 78/196 (39%), Gaps = 4/196 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A + G + PT++ Y L N A+ R+ +I++ + D+S Sbjct: 14 ARLINQAVAIIRNGGVVVYPTDSGYALGCQLENKQALERICQIRRLDDKHNFTLLCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD + L K PGP T + L + KT RVP L Sbjct: 74 ELSLYARVDNTAFRLLKNNTPGPYTFIFKGTKEVP-RRLMNSKRKTIGIRVPDNRIALDL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL S GQ + + + + I++GG +T+V+ ++ Sbjct: 133 LEALGEPLMSTSLILPGQDVTESDPEDIRDKLEHAVDCILNGGYLGE-QPTTVVDFSEDE 191 Query: 188 KVRILRPGGLEIETLK 203 V I+R G + + Sbjct: 192 PV-IVRMGSGDPSAFE 206 >gi|86133170|ref|ZP_01051752.1| YrdC protein [Polaribacter sp. MED152] gi|85820033|gb|EAQ41180.1| YrdC protein [Polaribacter sp. MED152] Length = 206 Score = 179 bits (455), Expect = 5e-43, Method: Composition-based stats. Identities = 50/199 (25%), Positives = 84/199 (42%), Gaps = 9/199 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP-LICHVSD 66 + ++KA + L G I PT+TVYGL D N A+ ++ IK +D Sbjct: 13 NPKEIQKAVKVLKNGGLIIYPTDTVYGLGCDITNTKALEKIALIKGIKLDKANFSFVCND 72 Query: 67 ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124 +S + + +D + L K PGP T +L ++ P KT R+P Sbjct: 73 LSHLSDYVKQLDSPTFKLLKRALPGPYTFILP---GSNNLPKVFKKRKTVGIRIPDNNIA 129 Query: 125 KKLIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + L+E G+P+ S I T ++ + L+IDGG STI+++ Sbjct: 130 RTLVEALGNPIVSSSIRDDDDILEYTTDPELIYEKWNNLVDLVIDGGYGD-NQASTIIDL 188 Query: 184 QCEKKVRILRPGGLEIETL 202 + ++R G ++ L Sbjct: 189 T-DNVPEVIREGKGSLDVL 206 >gi|282851604|ref|ZP_06260969.1| SUA5 domain protein [Lactobacillus gasseri 224-1] gi|282557572|gb|EFB63169.1| SUA5 domain protein [Lactobacillus gasseri 224-1] Length = 204 Score = 179 bits (455), Expect = 5e-43, Method: Composition-based stats. Identities = 57/202 (28%), Positives = 91/202 (45%), Gaps = 11/202 (5%) Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I G P+ PSAN S + S T H+ + +I IID G ++IGLESTIV++ E Sbjct: 2 ISELGKPIVGPSANTSTKPSPTTAGHVY-HDLKGKIAGIIDNGPTEIGLESTIVDLSVET 60 Query: 188 KVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244 +LRPG + E + + + E+ + P++PGM HYAP + V + Sbjct: 61 P-TVLRPGEITPEEISKVLGEEVLMNKGTTQTKGVPKAPGMKYRHYAPSAPVFI-VDKEE 118 Query: 245 PREALIRFGNVPIKNIENAIISLNLSKTGKL----KEAAFNLFNYMKIAD-DSGASSIAF 299 + + ++ + +N S L +AA NLF ++ D ++ I Sbjct: 119 DFSKIKWDKETGVAALDEVLDKINSSNKYSLGTTIDKAAHNLFGALRYFDSENNIKRIYV 178 Query: 300 SSIPNHGLGIAINNRLERAAAP 321 + + A NRL +AAA Sbjct: 179 QGFDHGTISPAYMNRLNKAAAG 200 >gi|187924529|ref|YP_001896171.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia phytofirmans PsJN] gi|187715723|gb|ACD16947.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia phytofirmans PsJN] Length = 211 Score = 179 bits (454), Expect = 6e-43, Method: Composition-based stats. Identities = 51/188 (27%), Positives = 84/188 (44%), Gaps = 4/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A + ++ G +A+PT++ Y LA + A+ RL I+ L V D+S Sbjct: 14 PRLVKQAVQIINDGGVVALPTDSSYALACHLDDKDAVERLRRIRGLDEKQLLSLLVRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + A VD L K PGP VL LS + KT RVP T + Sbjct: 74 ELANFAMVDNRQYRLIKSVTPGPYVFVLQATKEVP-RRLSHPSRKTIGLRVPDHAITLAI 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL + G+ N + + K++ L+ID G + ST++++ + Sbjct: 133 LEELGQPLLGSTLIMPGETQPLNDPEEIRERLEKQLDLVIDSGPC-VCEPSTVIDLTGAE 191 Query: 188 KVRILRPG 195 V ++RPG Sbjct: 192 PV-LVRPG 198 >gi|330503928|ref|YP_004380797.1| SUA5/YciO/YrdC/YwlC family protein [Pseudomonas mendocina NK-01] gi|328918214|gb|AEB59045.1| SUA5/YciO/YrdC/YwlC family protein [Pseudomonas mendocina NK-01] Length = 208 Score = 179 bits (454), Expect = 6e-43, Method: Composition-based stats. Identities = 46/189 (24%), Positives = 80/189 (42%), Gaps = 4/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +++A E + G + PT++ Y L + A+ R+ +++ + D+S Sbjct: 14 ARLIKQAVEIIRGGGVVVYPTDSSYALGCAIGDKNAVERIRRLRQLDDKHNFTLVCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + A VD + L K PGP T +L+ L +T RVP L Sbjct: 74 QIGLFAKVDTAAFRLLKNHTPGPYTFILNATREVP-RMLLHPKRRTIGIRVPSHPIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL S G + + + + + LIIDGG + ST+VN+ ++ Sbjct: 133 LEQLGEPLMSVSLIMPGDELPMSDPYEMRQILEHHVDLIIDGGFGGL-EASTVVNL-ADE 190 Query: 188 KVRILRPGG 196 ++LR G Sbjct: 191 SPQVLRVGC 199 >gi|260577562|ref|ZP_05845501.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium jeikeium ATCC 43734] gi|258604286|gb|EEW17524.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium jeikeium ATCC 43734] Length = 219 Score = 179 bits (454), Expect = 6e-43, Method: Composition-based stats. Identities = 51/191 (26%), Positives = 87/191 (45%), Gaps = 5/191 (2%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 + G + +PT+TVYG+ D+ + A+ L K R P+ V + ++ Sbjct: 24 VKGGRLVVLPTDTVYGIGCDAFDNEAVAALLRAKGRGPDMPVPVLVPSWTTIQGLVREYT 83 Query: 79 LS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAI 137 + L + FWPG L++V+ + + T T R+P + P+A+ Sbjct: 84 YNMRKLVEAFWPGGLSMVVHQAPSLPWNLGDT--RGTVMLRMPNQPIALELLERTGPMAV 141 Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197 SAN SGQ TNV+ + + ++ IDGG + G+ STIV++ + RILR G Sbjct: 142 SSANISGQPPATNVQ-MAEDQLGADVTTYIDGGEAHHGVASTIVDLSSGRP-RILREGAA 199 Query: 198 EIETLKRAISV 208 E + + + Sbjct: 200 TTERVAEVLGM 210 >gi|301022797|ref|ZP_07186639.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 196-1] gi|299881098|gb|EFI89309.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 196-1] Length = 206 Score = 179 bits (454), Expect = 7e-43, Method: Composition-based stats. Identities = 44/188 (23%), Positives = 78/188 (41%), Gaps = 4/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A E + G I PT++ Y L + A+ R+ I++ P + D+S Sbjct: 14 QRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + ++ VD ++ L K PG T +L L KT RVP + L Sbjct: 74 ELSTYSFVDNVAFRLMKNNTPGNYTFILKGTKEVP-RRLLQEKRKTIGMRVPSNPIAQTL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G P+ S G + + + K++ LII GG +T++++ + Sbjct: 133 LEALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGGYLGQ-KPTTVIDLTDDT 191 Query: 188 KVRILRPG 195 V ++R G Sbjct: 192 PV-VVREG 198 >gi|146306866|ref|YP_001187331.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas mendocina ymp] gi|145575067|gb|ABP84599.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas mendocina ymp] Length = 222 Score = 179 bits (454), Expect = 7e-43, Method: Composition-based stats. Identities = 47/189 (24%), Positives = 80/189 (42%), Gaps = 4/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +++A E + +G + PT++ Y L + A+ R+ +++ + D+S Sbjct: 28 ARLIKQAVEIIRSGGVVVYPTDSSYALGCAIGDKNAVERIRRLRQLDDKHNFTLVCRDLS 87 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + A VD + L K PGP T +L+ L +T RVP L Sbjct: 88 QIGLFAKVDTAAFRLLKNHTPGPYTFILNATREVP-RMLLHPKRRTIGLRVPSHPIALAL 146 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL S G + + + + ++ LIIDGG + ST+VN+ + Sbjct: 147 LEQLGEPLMSVSLILPGDELPMSDPYEMRQILEHQVELIIDGGFGGL-EASTVVNL-ADD 204 Query: 188 KVRILRPGG 196 ILR G Sbjct: 205 TPEILRVGC 213 >gi|228472867|ref|ZP_04057624.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga gingivalis ATCC 33624] gi|228275449|gb|EEK14226.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga gingivalis ATCC 33624] Length = 207 Score = 179 bits (454), Expect = 7e-43, Method: Composition-based stats. Identities = 46/199 (23%), Positives = 85/199 (42%), Gaps = 9/199 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP-LICHVSD 66 + ++K + L G I PT+TVYGL D + A+ R+ ++K +D Sbjct: 13 NEREIQKVVDCLREGGVIIYPTDTVYGLGCDITHSKALERIAQLKGIKLDKANFSFICAD 72 Query: 67 ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 +S + + +D + L K PG T +L ++ P KT R+P Sbjct: 73 LSNLSDYVKQIDTTTFKLLKRALPGAYTFILP---GSNNLPKEFKKKKTVGIRIPDNTIA 129 Query: 125 KKLIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + L+E G+P+ S ++ T ++ ++ ++IDGG + ST++++ Sbjct: 130 RTLVEKLGNPIVSSSIYDEDEVLEYTTDPELIFEKWQDKVDIVIDGGYGD-NVASTVIDL 188 Query: 184 QCEKKVRILRPGGLEIETL 202 ++R G IE L Sbjct: 189 SSGVP-ELIRQGKGSIEGL 206 >gi|84494536|ref|ZP_00993655.1| Sua5/YciO/YrdC/YwlC [Janibacter sp. HTCC2649] gi|84384029|gb|EAP99909.1| Sua5/YciO/YrdC/YwlC [Janibacter sp. HTCC2649] Length = 260 Score = 179 bits (454), Expect = 7e-43, Method: Composition-based stats. Identities = 57/212 (26%), Positives = 97/212 (45%), Gaps = 5/212 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + KA + G + +PT+T+YG+ D+ +P A++RL + K R P V ++ Sbjct: 14 QDGIAKATAGVRQGDLVVLPTDTLYGIGADAFSPDAVQRLLDAKGRGREMPPPVLVPEVR 73 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 V A V + L + +WPGPLTLV + T T R+P Sbjct: 74 TVDGLATDVPAYARALIERYWPGPLTLVFKAQPSLMWDLGDTGG--TVAVRMPDNEVALE 131 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + P+A+ SANR+GQ + + ++ + + +DGG GL STIV+ Sbjct: 132 LLKEVGPMAVSSANRTGQPASRTIIDA-ATQLGASVEFYLDGGPVTGGLASTIVDCT-HP 189 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETST 219 + ILR G ++ + + + LE +E + Sbjct: 190 EPTILRRGAIDADEIMALANQHLELPPEEPAA 221 >gi|317506168|ref|ZP_07963989.1| Sua5/YciO/YrdC/YwlC family protein [Segniliparus rugosus ATCC BAA-974] gi|316255513|gb|EFV14762.1| Sua5/YciO/YrdC/YwlC family protein [Segniliparus rugosus ATCC BAA-974] Length = 213 Score = 179 bits (454), Expect = 8e-43, Method: Composition-based stats. Identities = 51/187 (27%), Positives = 82/187 (43%), Gaps = 5/187 (2%) Query: 24 PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLSLH 82 + IPT+TVYGL D+ + A+ L K R P V + V+ A+V + Sbjct: 29 LVVIPTDTVYGLGCDAFDQAAVAALLSAKGRGRDMPTPVLVGSWATVEGLTAAVTDQAWQ 88 Query: 83 LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANR 142 L FWPGPL+LVL + + + T R+P + P+A+ SANR Sbjct: 89 LIHAFWPGPLSLVLPVAPS--LAWDLGETRGTVMVRMPLHPVALQVLGKVGPMAVSSANR 146 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202 SGQ + + + ++ G + +G STI+++ ++LR G L E + Sbjct: 147 SGQPPARTAAEA-KEQLGDSVAVYLESGSAPLGEPSTILDLSSGAP-KVLREGALSAERI 204 Query: 203 KRAISVE 209 + V Sbjct: 205 AEVLGVP 211 >gi|295394651|ref|ZP_06804870.1| Sua5/YciO/YrdC/YwlC family protein [Brevibacterium mcbrellneri ATCC 49030] gi|294972544|gb|EFG48400.1| Sua5/YciO/YrdC/YwlC family protein [Brevibacterium mcbrellneri ATCC 49030] Length = 220 Score = 178 bits (453), Expect = 8e-43, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 93/207 (44%), Gaps = 6/207 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L + + + IPT+TVYG+A D+ +P + +L + K R P V V Sbjct: 19 LEECARVVRGDGLLVIPTDTVYGIAADAFSPQGVAKLLQAKGRGRDMPPPVLVPRAETVM 78 Query: 72 KHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130 A VD + L FWPGPLT++ + + +H T R+P + + Sbjct: 79 GLAEAVDSSVMELTARFWPGPLTIICNAQPS--LHWDLGDTHGTVGLRMPDHEDTLALLS 136 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 PLA+ SAN SG+ + NV+ S + + + +DGG + G STI+++ R Sbjct: 137 KVGPLAVSSANLSGEPAAVNVEQA-QSMLGDRVDIFLDGGEAPGGQSSTIIDMSGSVP-R 194 Query: 191 ILRPGGLEIETLKRAISVELEYCVDET 217 +LR G + + L + LE E Sbjct: 195 MLREGPISFDELAEVVD-GLEPLAPEA 220 >gi|31792494|ref|NP_854987.1| hypothetical protein Mb1333 [Mycobacterium bovis AF2122/97] gi|121637230|ref|YP_977453.1| hypothetical protein BCG_1361 [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|215426623|ref|ZP_03424542.1| hypothetical protein MtubT9_09614 [Mycobacterium tuberculosis T92] gi|224989705|ref|YP_002644392.1| hypothetical protein JTY_1336 [Mycobacterium bovis BCG str. Tokyo 172] gi|260186240|ref|ZP_05763714.1| hypothetical protein MtubCP_09458 [Mycobacterium tuberculosis CPHL_A] gi|260200354|ref|ZP_05767845.1| hypothetical protein MtubT4_09548 [Mycobacterium tuberculosis T46] gi|260204559|ref|ZP_05772050.1| hypothetical protein MtubK8_09663 [Mycobacterium tuberculosis K85] gi|289442740|ref|ZP_06432484.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis T46] gi|289446896|ref|ZP_06436640.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis CPHL_A] gi|289573964|ref|ZP_06454191.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis K85] gi|289749855|ref|ZP_06509233.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|31618083|emb|CAD94194.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97] gi|121492877|emb|CAL71348.1| Conserved hypothetical protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224772818|dbj|BAH25624.1| hypothetical protein JTY_1336 [Mycobacterium bovis BCG str. Tokyo 172] gi|289415659|gb|EFD12899.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis T46] gi|289419854|gb|EFD17055.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis CPHL_A] gi|289538395|gb|EFD42973.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis K85] gi|289690442|gb|EFD57871.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] Length = 217 Score = 178 bits (453), Expect = 8e-43, Method: Composition-based stats. Identities = 50/202 (24%), Positives = 87/202 (43%), Gaps = 5/202 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S + A + AG + +PT+TVYG+ D+ + +A+ L K R P+ V Sbjct: 14 SRGIVSAVGAIKAGQLVVMPTDTVYGIGADAFDSSAVAALLSAKGRGRDMPVGVLVGSWH 73 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 ++ S+ + L + FWPG L+LV+ + T R+P Sbjct: 74 TIEGLVYSMPDGARELIRAFWPGALSLVVVQAPSLQW--DLGDAHGTVMLRMPLHPVAIE 131 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + P+A+ SAN SG + + S + + + +D G S+ STIV++ Sbjct: 132 LLREVGPMAVSSANISGHPPPVDAEQA-RSQLGDHVAVYLDAGPSEQQAGSTIVDLTGAT 190 Query: 188 KVRILRPGGLEIETLKRAISVE 209 R+LR G + E + + V+ Sbjct: 191 P-RVLRQGPVSTERIAEVLGVD 211 >gi|257452399|ref|ZP_05617698.1| SUA5 protein [Fusobacterium sp. 3_1_5R] gi|317058942|ref|ZP_07923427.1| SUA5 protein [Fusobacterium sp. 3_1_5R] gi|313684618|gb|EFS21453.1| SUA5 protein [Fusobacterium sp. 3_1_5R] Length = 202 Score = 178 bits (453), Expect = 8e-43, Method: Composition-based stats. Identities = 57/199 (28%), Positives = 100/199 (50%), Gaps = 8/199 (4%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 ++ E + G I PT+TVYG+ ++ A+ LY+ K R +PLI V + + + Sbjct: 6 QEIGEQIKKGALIIYPTDTVYGIGASIQSEEALIHLYQAKSRNFSSPLIALVDSVERISE 65 Query: 73 HASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 A V+ L L++ FWPG LT++L + + + + T R+P +I Sbjct: 66 IAYVERKKELLEKLSQKFWPGGLTIILP--AKDCVPKIMISGGNTVGVRIPNHEMALSII 123 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 G L SAN SG+ + ++ + LS +I + ++IDGG+ +G STI++ + Sbjct: 124 RASGGILPTTSANISGEATPSSYQE-LSEAIKRNADIVIDGGVCPVGEASTILDFTKD-S 181 Query: 189 VRILRPGGLEIETLKRAIS 207 ++ILR G + E ++ I Sbjct: 182 IQILRLGAITKEEIEAVIG 200 >gi|254506994|ref|ZP_05119132.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio parahaemolyticus 16] gi|219549989|gb|EED26976.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio parahaemolyticus 16] Length = 206 Score = 178 bits (453), Expect = 9e-43, Method: Composition-based stats. Identities = 40/182 (21%), Positives = 70/182 (38%), Gaps = 3/182 (1%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A + G + PT++ Y L N A+ R+ +I++ + D+S Sbjct: 14 ARLINQAVAIIRNGGVVVYPTDSGYALGCQLENKQALERICQIRRLDEKHNFTLLCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD + L K PGP T + L + KT RVP L Sbjct: 74 ELSLYARVDNSAFRLLKNNTPGPYTFIFKGTKEVP-RRLMNSKRKTIGIRVPDNQIALDL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL S G + + + + I++GG +T+V+ + Sbjct: 133 LEALGEPLMSTSLILPGNDYTESDPEDIRDKLEHAVDCILNGGYLGE-QPTTVVDFSDDD 191 Query: 188 KV 189 V Sbjct: 192 PV 193 >gi|189424902|ref|YP_001952079.1| Sua5/YciO/YrdC/YwlC family protein [Geobacter lovleyi SZ] gi|189421161|gb|ACD95559.1| Sua5/YciO/YrdC/YwlC family protein [Geobacter lovleyi SZ] Length = 203 Score = 178 bits (453), Expect = 9e-43, Method: Composition-based stats. Identities = 50/195 (25%), Positives = 93/195 (47%), Gaps = 6/195 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + + L G +A PT+T YGL N + R+Y++K+R P SD+S Sbjct: 12 PRQIAQVVDCLKNGGIVAYPTDTTYGLGCSIFNKKGLERIYQVKQRDKRKPFSFICSDLS 71 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 V ++A + + + K + PGP T VL+ ++ ++ L KT R+P + Sbjct: 72 EVSRYARLTNHAFKIMKRYLPGPYTFVLE--ASREVPDLLITKQKTVGIRMPDNAICLSI 129 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ G P+ SAN SG+ ++ + L++DGG+ + S++V++ K Sbjct: 130 VQGLGVPIVTTSANLSGED-PVGDPLEINRLFGHALDLVVDGGLLTTDV-SSVVSL-VGK 186 Query: 188 KVRILRPGGLEIETL 202 + +LR G ++ L Sbjct: 187 EPELLREGAGDLSWL 201 >gi|283785438|ref|YP_003365303.1| hypothetical protein ROD_17371 [Citrobacter rodentium ICC168] gi|282948892|emb|CBG88494.1| conserved hypothetical protein [Citrobacter rodentium ICC168] Length = 206 Score = 178 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 44/188 (23%), Positives = 77/188 (40%), Gaps = 4/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A E + G I PT++ Y L + A+ R+ I++ P + D+S Sbjct: 14 QRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKGAMERICRIRQLPDGHNFTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + ++ VD ++ L K PG T +L L KT RVP +L Sbjct: 74 DLSTYSFVDNVAFRLIKNNTPGNYTFILKGTKEVP-RRLLQEKRKTIGLRVPSNPIALEL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G P+ S G + + + K++ LII GG +T++++ + Sbjct: 133 LAALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGGYLGQ-QPTTVIDLTDDS 191 Query: 188 KVRILRPG 195 V +LR G Sbjct: 192 PV-VLREG 198 >gi|85859579|ref|YP_461781.1| Sua5/YciO/YrdC/YwlC family protein [Syntrophus aciditrophicus SB] gi|85722670|gb|ABC77613.1| Sua5/YciO/YrdC/YwlC family protein [Syntrophus aciditrophicus SB] Length = 202 Score = 178 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 54/194 (27%), Positives = 85/194 (43%), Gaps = 6/194 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++K E L G + PT+TVYGL + N I ++YEIKKR PL +D+ Sbjct: 12 TRLIKKVAEILRDGGIVIYPTDTVYGLGCNLFNKKGIEKIYEIKKRNKKQPLSFICADLK 71 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + K+A V + K PGP T +L ++ + + +T RVP L Sbjct: 72 DISKYAQVTDFGYRIMKRHLPGPYTFILQ--ASRLVPKIILPKRQTTGIRVPDNRICMAL 129 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G P+ S + N + S + +II+GGI STIV++ + Sbjct: 130 VAELGQPIISTSVKAADD-RYLNDPEEIESIFKHHVDVIINGGIIAA-EPSTIVSLI-DD 186 Query: 188 KVRILRPGGLEIET 201 V +LR G + Sbjct: 187 TVEVLRIGKGDASE 200 >gi|255532909|ref|YP_003093281.1| Sua5/YciO/YrdC/YwlC family protein [Pedobacter heparinus DSM 2366] gi|255345893|gb|ACU05219.1| Sua5/YciO/YrdC/YwlC family protein [Pedobacter heparinus DSM 2366] Length = 206 Score = 178 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 46/197 (23%), Positives = 87/197 (44%), Gaps = 8/197 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSD 66 + A+ + + L G I PT+TVYGL D N AI ++ ++ +P SD Sbjct: 11 NPKAIEQIVDVLKKGGLIIYPTDTVYGLGCDITNQKAIEKICRLRGIKPEKANFSFICSD 70 Query: 67 ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 + + +D + + K PGP T +L+ + ++ L ++N KT RVP Sbjct: 71 LRHISDFIKPIDTATFRVLKKALPGPFTFILN--ANNNVPKLLSSNKKTVGIRVPDNDIA 128 Query: 125 KKLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 ++++ G+P+ S + I + ++ + ++IDGG ST+V+ Sbjct: 129 REIVRQLGNPILSTSIRDDDEVIEYSTDPELIHEKYENTVDMVIDGGFGD-NEASTVVDC 187 Query: 184 QCEKKVRILRPGGLEIE 200 I+R G +++ Sbjct: 188 TSGD-FEIIREGKGDLD 203 >gi|170768140|ref|ZP_02902593.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia albertii TW07627] gi|170122906|gb|EDS91837.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia albertii TW07627] Length = 218 Score = 178 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 44/188 (23%), Positives = 77/188 (40%), Gaps = 4/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A E + G I PT++ Y L + A+ R+ I++ P + D+S Sbjct: 26 QRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLS 85 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + ++ VD ++ L K PG T +L L KT RVP + L Sbjct: 86 ELSTYSFVDNVAFRLMKNNTPGNYTFILKGTKEVP-RRLLQEKRKTIGMRVPSNPIAQAL 144 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G P+ S G + + + K++ LII GG +T++++ Sbjct: 145 LEALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGGYLGQ-KPTTVIDLTDNT 203 Query: 188 KVRILRPG 195 V ++R G Sbjct: 204 PV-VVREG 210 >gi|183984067|ref|YP_001852358.1| hypothetical protein MMAR_4096 [Mycobacterium marinum M] gi|183177393|gb|ACC42503.1| conserved hypothetical protein [Mycobacterium marinum M] Length = 216 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 55/202 (27%), Positives = 88/202 (43%), Gaps = 6/202 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 SN + A L AG + +PT+TVYG+ D+ + A+ L K R P+ V Sbjct: 14 SNGIASAAGALKAGRLVVMPTDTVYGIGADAFDSAAVNALLSAKGRGRDMPVGVLVGSWH 73 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 ++ S+ + L + FWPG L+LV+ + T R+P Sbjct: 74 TIEGLVFSMPAGARELIRAFWPGALSLVVVQAPSLQW--DLGNAHGTVMLRMPLHPVAIE 131 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + P+A+ SAN SGQ +V + + + +DGG + STIV++ Sbjct: 132 LLRQVGPMAVSSANVSGQPPAVDVADA-RNQFGDLVDVYLDGGPAAQQAASTIVDLTGA- 189 Query: 188 KVRILRPGGLEIETLKRAISVE 209 RILRPG + E + + V+ Sbjct: 190 -PRILRPGPVSAERIADVLGVD 210 >gi|256820827|ref|YP_003142106.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga ochracea DSM 7271] gi|256582410|gb|ACU93545.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga ochracea DSM 7271] Length = 206 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 48/199 (24%), Positives = 83/199 (41%), Gaps = 9/199 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP-LICHVSD 66 + + + E L G I PT+TVYGL D N A+ ++ IK SD Sbjct: 13 NEKDINRVVEVLRRGGLIIYPTDTVYGLGCDITNTKALEKIARIKGVKLEKANFSFVCSD 72 Query: 67 ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 + + + +D + L K PGP T ++ + P KT RVP Sbjct: 73 LKNLSDYVKQIDTSTFKLLKRTLPGPYTFIMQGNNNL---PKDFKKKKTVGIRVPDNLIA 129 Query: 125 KKLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + ++E G+P+ S I T ++ ++ L+IDGG + ST++++ Sbjct: 130 RTIVEKLGNPIVSTSIYDEDDVIEYTTDPELIFEKWQNKVDLVIDGGYGD-NVASTVIDL 188 Query: 184 QCEKKVRILRPGGLEIETL 202 + ++LR G +I + Sbjct: 189 SGDAP-KVLREGKGDISII 206 >gi|283832908|ref|ZP_06352649.1| Sua5/YciO/YrdC/YwlC family protein [Citrobacter youngae ATCC 29220] gi|291071513|gb|EFE09622.1| Sua5/YciO/YrdC/YwlC family protein [Citrobacter youngae ATCC 29220] Length = 206 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 45/188 (23%), Positives = 76/188 (40%), Gaps = 4/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A E + G I PT++ Y L + A+ R+ I+ P + D+S Sbjct: 14 QRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKGAMERICRIRHLPDGHNFTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + ++ VD ++ L K PG T +L L KT RVP L Sbjct: 74 ELSTYSFVDNVAFRLIKNNTPGNYTFILKGTKEVP-RRLLQEKRKTIGLRVPSNPIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G P+ S G + + + K++ LII GG +T++++ + Sbjct: 133 LEALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGGYLGQ-QPTTVIDLTDDS 191 Query: 188 KVRILRPG 195 V +LR G Sbjct: 192 PV-VLREG 198 >gi|118467540|ref|YP_889200.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium smegmatis str. MC2 155] gi|118168827|gb|ABK69723.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium smegmatis str. MC2 155] Length = 221 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 53/218 (24%), Positives = 91/218 (41%), Gaps = 9/218 (4%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 Q+ D+ + A + G + +PT+TVYG+ D+ + A+ L K R Sbjct: 3 QLFDCADAEQRAIGIASAVSAVKGGRLVVMPTDTVYGIGADAFDSGAVGALLAAKGRGRD 62 Query: 58 NPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 P+ V + + SV + L + FWPG L+LV+ + T + Sbjct: 63 MPVGVLVGSWTTIDGLVYSVPRAARELIRAFWPGALSLVVHQAPSLQWDLGDT--RGSVM 120 Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P + P+A+ SAN SG+ + + + + +DGG ++ Sbjct: 121 LRMPLHPVAIELLREVGPMAVSSANISGRPAAGTATEA-REQLGDLVEVYLDGGPAEQQA 179 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV 214 STIV++ RILR G + E + R + VE+ Sbjct: 180 ASTIVDLTGSDP-RILRTGPISAEDVARVLDVEVATLT 216 >gi|157145596|ref|YP_001452915.1| hypothetical protein CKO_01342 [Citrobacter koseri ATCC BAA-895] gi|157082801|gb|ABV12479.1| hypothetical protein CKO_01342 [Citrobacter koseri ATCC BAA-895] Length = 206 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 45/188 (23%), Positives = 76/188 (40%), Gaps = 4/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A E + G I PT++ Y L + A+ R+ I+ P + D+S Sbjct: 14 QRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKGAMERICRIRHLPDGHNFTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + ++ VD ++ L K PG T +L L KT RVP L Sbjct: 74 ELSTYSFVDNVAFRLIKNNTPGNYTFILKGTKDVP-RRLLQEKRKTIGLRVPSNPIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G P+ S G + + + K++ LII GG +T++++ + Sbjct: 133 LEALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGGYLGQ-QPTTVIDLTDDS 191 Query: 188 KVRILRPG 195 V +LR G Sbjct: 192 PV-VLREG 198 >gi|157118653|ref|XP_001659198.1| hypothetical protein AaeL_AAEL001412 [Aedes aegypti] gi|108883260|gb|EAT47485.1| conserved hypothetical protein [Aedes aegypti] Length = 251 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 106/206 (51%), Gaps = 8/206 (3%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 ++ +D+ A+R+A L++G IA+PT+TVYGLA + +P AI+RLY IK R P+ Sbjct: 38 VIKSSDNKAIRQAANLLESGKVIALPTDTVYGLACSANDPKAIQRLYAIKGREEKKPVAI 97 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC- 121 V+D + ++ + L L + PGP+T+V+ D +P ++ R+P Sbjct: 98 CVADFNDLRHWGQANHLPNELLEQLLPGPVTIVVRKSVHLD-NPFLNPGVEKIGIRIPDF 156 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE---- 177 F + + + P+A+ SANRS + S NV + + + DGG + E Sbjct: 157 DFIRDVSRAFRFPVALTSANRSSEQSTLNVGE--FEKLWPALGAVFDGGQLGLREEQRAA 214 Query: 178 STIVNVQCEKKVRILRPGGLEIETLK 203 ST++++ + +I+R G T++ Sbjct: 215 STVIDLSQVGQYKIIRKGVAIEHTVR 240 >gi|325528913|gb|EGD05947.1| putative translation factor [Burkholderia sp. TJI49] Length = 195 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 57/175 (32%), Positives = 82/175 (46%), Gaps = 12/175 (6%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL-S 80 G +A PTETVYGL D+ NP A+ R+Y K RPA +P+I H+ P + Sbjct: 24 GQLVAFPTETVYGLGGDAANPEAVARIYAAKGRPANHPVIVHLPPGGDPGYWVDALPADA 83 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETY-------GH 133 L FWPGPLTL+L I + + R P + + Sbjct: 84 QKLIDAFWPGPLTLILKRHP--RIPDAVSGGQDSVGLRCPSHPVAQALLAAFSARRGGHG 141 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 +A PSANR G +S T +H+ + ++DGG S++G+ESTIV++ Sbjct: 142 GVAAPSANRFGHVSPTTAQHVRDEF--GDTVHVLDGGASEVGIESTIVDLSRGFP 194 >gi|323356868|ref|YP_004223264.1| translation factor (SUA5) [Microbacterium testaceum StLB037] gi|323273239|dbj|BAJ73384.1| putative translation factor (SUA5) [Microbacterium testaceum StLB037] Length = 253 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 61/209 (29%), Positives = 101/209 (48%), Gaps = 11/209 (5%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + +R A + + G + +PT+TVYG+A D+ N A+ L E K R P V+ + Sbjct: 15 SGMRHARQAIGRGELVVLPTDTVYGIAADAFNARAVAGLLEAKGRGRQQPPPVLVAGVGT 74 Query: 70 VKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 ++ + P ++ L + FWPG LT+VL + + T R+P T +L Sbjct: 75 LRALVAEIPAAVDDLVREFWPGGLTIVLPAQPS--LSWDLGDTHGTVAVRMPAHHLTLEL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC-- 185 +E G PLA+ SAN +G + ++ + + +D G S+ G+ STIV+ Sbjct: 133 LEETG-PLAVSSANLTGMAAAVDIDSA-RDMLGDSVSAYLDSGPSETGIASTIVDATTLV 190 Query: 186 ---EKKVRILRPGGLEIETLKRAISVELE 211 E +VR+LR G + E L+ + LE Sbjct: 191 GGAEPRVRVLREGAVSRERLREVLGDLLE 219 >gi|257466268|ref|ZP_05630579.1| SUA5 protein [Fusobacterium gonidiaformans ATCC 25563] gi|315917425|ref|ZP_07913665.1| SUA5 protein [Fusobacterium gonidiaformans ATCC 25563] gi|313691300|gb|EFS28135.1| SUA5 protein [Fusobacterium gonidiaformans ATCC 25563] Length = 202 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 57/199 (28%), Positives = 100/199 (50%), Gaps = 8/199 (4%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 ++ E + G I PT+TVYG+ ++ A+ LY+ K R +PLI V + + + Sbjct: 6 QEIGEQIKKGALIIYPTDTVYGIGASIQSEEALIHLYQAKSRNFSSPLIALVDSVERISE 65 Query: 73 HASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 A V+ L L++ FWPG LT++L + + + + T R+P +I Sbjct: 66 IAYVERKKELLEKLSQKFWPGGLTIILP--AKDCVPKIMISGGNTVGVRIPNHEMALSII 123 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 G L SAN SG+ + ++ + LS +I + ++IDGG+ +G STI++ + Sbjct: 124 RAAGGILPTTSANISGEATPSSYQE-LSEAIKRNADIVIDGGVCPVGEASTILDFTKD-S 181 Query: 189 VRILRPGGLEIETLKRAIS 207 ++ILR G + E ++ I Sbjct: 182 IQILRLGAITKEEIEAVIG 200 >gi|314966528|gb|EFT10627.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL082PA2] gi|315092952|gb|EFT64928.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL060PA1] gi|327327352|gb|EGE69128.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL103PA1] Length = 290 Score = 177 bits (451), Expect = 1e-42, Method: Composition-based stats. Identities = 58/198 (29%), Positives = 95/198 (47%), Gaps = 4/198 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +AL +A + + G I +PT+TVYG+ D+ N A++RL K+R P VSD Sbjct: 58 EDALEQAADAIADGECIVLPTDTVYGIGADALNALAVQRLLNAKERGRDMPPPVLVSDSV 117 Query: 69 MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 + P + LA+ +WPG LTLVL + + T T RVP + Sbjct: 118 ALPALCQHIPAGAKALAEKYWPGGLTLVLRAQESLGMDLGKTNG--TLAVRVPDQDQTRE 175 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + PLA+ SAN+SG + + + + E+ + +D G S++G STI++ Sbjct: 176 LLRMTGPLAVSSANKSGHPAALTAQEA-ADQLGVEVAVYLDAGPSRVGESSTIIDFVSTT 234 Query: 188 KVRILRPGGLEIETLKRA 205 +++R G L +E + Sbjct: 235 DGKVVRQGALSLEAIHEV 252 >gi|62180287|ref|YP_216704.1| hypothetical protein SC1717 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62127920|gb|AAX65623.1| putative translation factor [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322714761|gb|EFZ06332.1| Uncharacterized protein yciO [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 206 Score = 177 bits (451), Expect = 1e-42, Method: Composition-based stats. Identities = 44/188 (23%), Positives = 77/188 (40%), Gaps = 4/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A + + G I PT++ Y L + A+ R+ I+ P + D+S Sbjct: 14 QRLINQAVDIVRKGGVIVYPTDSGYALGCKIEDKGAMERICRIRHLPDGHNFTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + ++ VD ++ L K PG T +L L KT RVP L Sbjct: 74 ELSTYSYVDNVAFRLMKNNTPGNYTFILKGTKEVP-RRLLQEKRKTIGLRVPSNPIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++T G P+ S G + + + K++ LII GG +T++++ + Sbjct: 133 LDTLGEPMLSTSLMLPGSDFTESDPEEIKDRLEKQVDLIIHGGYLGQ-QPTTVIDLTNDS 191 Query: 188 KVRILRPG 195 V +LR G Sbjct: 192 PV-VLREG 198 >gi|118619167|ref|YP_907499.1| hypothetical protein MUL_3963 [Mycobacterium ulcerans Agy99] gi|118571277|gb|ABL06028.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99] Length = 216 Score = 177 bits (451), Expect = 1e-42, Method: Composition-based stats. Identities = 55/202 (27%), Positives = 88/202 (43%), Gaps = 6/202 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 SN + A L AG + +PT+TVYG+ D+ + A+ L K R P+ V Sbjct: 14 SNGIASAAGALKAGRLVVMPTDTVYGIGADAFDSAAVNALLSAKGRGRDMPVGVLVGSWH 73 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 ++ S+ + L + FWPG L+LV+ + T R+P Sbjct: 74 TIEGLVFSMPAGARELIRAFWPGALSLVVVQAPSLQW--DLGNAHGTVMLRMPLHPVAIE 131 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + P+A+ SAN SGQ +V + + + +DGG + STIV++ Sbjct: 132 LLRQVGPMAVSSANVSGQPPAVDVADA-RNQFGDLVDVYLDGGPAAQQAASTIVDLTGA- 189 Query: 188 KVRILRPGGLEIETLKRAISVE 209 RILRPG + E + + V+ Sbjct: 190 -PRILRPGPVSAERIADVLGVD 210 >gi|237806935|ref|YP_002891375.1| Sua5/YciO/YrdC/YwlC family protein [Tolumonas auensis DSM 9187] gi|237499196|gb|ACQ91789.1| Sua5/YciO/YrdC/YwlC family protein [Tolumonas auensis DSM 9187] Length = 186 Score = 177 bits (451), Expect = 1e-42, Method: Composition-based stats. Identities = 51/187 (27%), Positives = 79/187 (42%), Gaps = 7/187 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + L++AC+ L +G IA TE V+GL D N TA+ +L +IK+RP LI + Sbjct: 2 TENLQQACQILRSGGVIAYATEAVFGLGCDPDNETAVHKLLQIKQRPIEKGLILIAASWE 61 Query: 69 MVKKHASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-T 124 + + V L A+ WPGP T V + T + R+ Sbjct: 62 QLAPYLDVSLLTEEQLQRAQKSWPGPYTWVFP--AKISTPKWLTGQFSSLAVRISAHPQV 119 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + L YG P+ SAN + V+ + S + I I+ G + K S I +V Sbjct: 120 QALCLMYGKPMVSTSANLTSLPPCRTVEDV-RSQLTGRIDYILPGDVGKQTNPSEIRDVI 178 Query: 185 CEKKVRI 191 + +R Sbjct: 179 TNQLIRA 185 >gi|311746055|ref|ZP_07719840.1| Sua5/YciO/YrdC/YwlC family protein [Algoriphagus sp. PR1] gi|126576272|gb|EAZ80550.1| Sua5/YciO/YrdC/YwlC family protein [Algoriphagus sp. PR1] Length = 209 Score = 177 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 48/199 (24%), Positives = 86/199 (43%), Gaps = 8/199 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR-PAMNPLICHVSD 66 D +R+ L G + PT+TVYGL D N A+ R+ IK P + +D Sbjct: 14 DPKKIREIAALLRDGAVVIYPTDTVYGLGCDITNTRAVERICRIKGINPRKHNFSFVCAD 73 Query: 67 ISMVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT- 124 +S + + V + K PGP T +L+ + T + + + KT RVP Sbjct: 74 LSTISHYTRVITKPVFKMMKKALPGPYTFILE--ANTQVPKILHSKKKTVGIRVPDHKVP 131 Query: 125 KKLIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + L+E G PL S ++ + ++ + ++I GG + + ST+++ Sbjct: 132 RMLVEELGQPLLSTSIRDEDEVLEYSTDPELIFEKYEHLVDVVIHGGFGQ-NIGSTVLDC 190 Query: 184 QCEKKVRILRPGGLEIETL 202 ++ I+R G +E + Sbjct: 191 TG-HEMEIIREGLGNVEEI 208 >gi|313764218|gb|EFS35582.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL013PA1] gi|313812713|gb|EFS50427.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL025PA1] gi|313816311|gb|EFS54025.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL059PA1] gi|313827395|gb|EFS65109.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL063PA2] gi|314915696|gb|EFS79527.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL005PA4] gi|314917935|gb|EFS81766.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL050PA1] gi|314920318|gb|EFS84149.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL050PA3] gi|314931538|gb|EFS95369.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL067PA1] gi|314955549|gb|EFS99952.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL027PA1] gi|314957923|gb|EFT02026.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL002PA1] gi|314967571|gb|EFT11670.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL037PA1] gi|315098769|gb|EFT70745.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL059PA2] gi|315101461|gb|EFT73437.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL046PA1] gi|315108753|gb|EFT80729.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL030PA2] gi|327450547|gb|EGE97201.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL087PA3] gi|327454114|gb|EGF00769.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL083PA2] gi|328753197|gb|EGF66813.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL025PA2] gi|328753964|gb|EGF67580.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL087PA1] Length = 290 Score = 177 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 58/198 (29%), Positives = 95/198 (47%), Gaps = 4/198 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +AL +A + + G I +PT+TVYG+ D+ N A++RL K+R P VSD Sbjct: 58 EDALEQAADAIADGECIVLPTDTVYGIGADALNALAVQRLLNAKERGRDMPPPVLVSDSV 117 Query: 69 MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 + P + LA+ +WPG LTLVL + + T T RVP + Sbjct: 118 ALPALCQHIPAGAKALAEKYWPGGLTLVLRAQESLGMDLGETNG--TLAVRVPDQDQTRE 175 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + PLA+ SAN+SG + + + + E+ + +D G S++G STI++ Sbjct: 176 LLRMTGPLAVSSANKSGHPAALTAQEA-ADQLGVEVAVYLDAGPSRVGESSTIIDFVSTT 234 Query: 188 KVRILRPGGLEIETLKRA 205 +++R G L +E + Sbjct: 235 DGKVVRQGALSLEAIHEV 252 >gi|119715988|ref|YP_922953.1| translation factor SUA5 [Nocardioides sp. JS614] gi|119536649|gb|ABL81266.1| translation factor SUA5 [Nocardioides sp. JS614] Length = 219 Score = 177 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 60/190 (31%), Positives = 91/190 (47%), Gaps = 5/190 (2%) Query: 18 FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SV 76 + G + +PT+TVYG+ D+ +P A+R L K R P VS + + A V Sbjct: 23 AVQRGELVVLPTDTVYGVGADAFDPAAVRGLLAAKGRGRDLPPPVLVSAATTLDALAVRV 82 Query: 77 DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLA 136 + L + FWPGPLTLV S+ T T R+P + I PLA Sbjct: 83 PGYARALVEAFWPGPLTLVCHQQSSLQWDLGDT--RGTVAVRMPDHDVAREILERTGPLA 140 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 + SAN++G + T+ + ++ +I+DGG + G STIV+V + R+LR G Sbjct: 141 VSSANKTGMPAATDADQA-EDMLGDDVAVIVDGGPAPGGEASTIVDVTGAQG-RVLRRGA 198 Query: 197 LEIETLKRAI 206 L +E L + Sbjct: 199 LSLERLNEVL 208 >gi|16760160|ref|NP_455777.1| hypothetical protein STY1330 [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16765064|ref|NP_460679.1| hypothetical protein STM1720 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29142069|ref|NP_805411.1| hypothetical protein t1633 [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56413354|ref|YP_150429.1| hypothetical protein SPA1156 [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161613790|ref|YP_001587755.1| hypothetical protein SPAB_01524 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167549771|ref|ZP_02343529.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168230159|ref|ZP_02655217.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168237773|ref|ZP_02662831.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168241299|ref|ZP_02666231.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168260058|ref|ZP_02682031.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168462805|ref|ZP_02696736.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168819543|ref|ZP_02831543.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194443555|ref|YP_002040974.1| hypothetical protein SNSL254_A1847 [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194451404|ref|YP_002045767.1| hypothetical protein SeHA_C1910 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194470175|ref|ZP_03076159.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194734510|ref|YP_002114752.1| hypothetical protein SeSA_A1852 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197250623|ref|YP_002146306.1| hypothetical protein SeAg_B1426 [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197262994|ref|ZP_03163068.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197362278|ref|YP_002141915.1| hypothetical protein SSPA1075 [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|200390159|ref|ZP_03216770.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204927841|ref|ZP_03219042.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|207856767|ref|YP_002243418.1| hypothetical protein SEN1313 [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213023265|ref|ZP_03337712.1| hypothetical protein Salmonelentericaenterica_12025 [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213163148|ref|ZP_03348858.1| hypothetical protein Salmoneentericaenterica_25228 [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213421198|ref|ZP_03354264.1| hypothetical protein Salmonentericaenterica_27079 [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213424437|ref|ZP_03357250.1| hypothetical protein SentesTyphi_01480 [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213582659|ref|ZP_03364485.1| hypothetical protein SentesTyph_16218 [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213619078|ref|ZP_03372904.1| hypothetical protein SentesTyp_22475 [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213649102|ref|ZP_03379155.1| hypothetical protein SentesTy_18553 [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213855224|ref|ZP_03383464.1| hypothetical protein SentesT_14592 [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224583788|ref|YP_002637586.1| hypothetical protein SPC_2009 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238911888|ref|ZP_04655725.1| hypothetical protein SentesTe_12251 [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289829088|ref|ZP_06546768.1| hypothetical protein Salmonellentericaenterica_21274 [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25319041|pir||AH0653 conserved hypothetical protein STY1330 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16420250|gb|AAL20638.1| putative translation factor [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16502454|emb|CAD08411.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29137698|gb|AAO69260.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56127611|gb|AAV77117.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161363154|gb|ABX66922.1| hypothetical protein SPAB_01524 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194402218|gb|ACF62440.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194409708|gb|ACF69927.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194456539|gb|EDX45378.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194710012|gb|ACF89233.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195634421|gb|EDX52773.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197093755|emb|CAR59229.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197214326|gb|ACH51723.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197241249|gb|EDY23869.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197289249|gb|EDY28616.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|199602604|gb|EDZ01150.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204323183|gb|EDZ08379.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205325048|gb|EDZ12887.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205335546|gb|EDZ22310.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205339648|gb|EDZ26412.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205343598|gb|EDZ30362.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205350954|gb|EDZ37585.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206708570|emb|CAR32891.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224468315|gb|ACN46145.1| hypothetical protein SPC_2009 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261246910|emb|CBG24727.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|301158248|emb|CBW17747.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912713|dbj|BAJ36687.1| hypothetical protein STMDT12_C17440 [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320085781|emb|CBY95557.1| putative ribosome maturation factor rimN [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321224351|gb|EFX49414.1| YciO family [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323129992|gb|ADX17422.1| Uncharacterized protein yciO [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326623168|gb|EGE29513.1| Uncharacterized protein yciO [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|332988609|gb|AEF07592.1| hypothetical protein STMUK_1692 [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 206 Score = 177 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 44/188 (23%), Positives = 77/188 (40%), Gaps = 4/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A + + G I PT++ Y L + A+ R+ I+ P + D+S Sbjct: 14 QRLINQAVDIVRKGGVIVYPTDSGYALGCKIEDKGAMERICRIRHLPDGHNFTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + ++ VD ++ L K PG T +L L KT RVP L Sbjct: 74 ELSTYSYVDNVAFRLMKNNTPGNYTFILKGTKEVP-RRLLQEKRKTIGLRVPSNPIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++T G P+ S G + + + K++ LII GG +T++++ + Sbjct: 133 LDTLGEPMLSTSLMLPGSDFTESDPEEIKDRLEKQVDLIIHGGYLGQ-QPTTVIDLTNDS 191 Query: 188 KVRILRPG 195 V +LR G Sbjct: 192 PV-VLREG 198 >gi|50842729|ref|YP_055956.1| SUA5 related protein [Propionibacterium acnes KPA171202] gi|50840331|gb|AAT82998.1| SUA5 related protein [Propionibacterium acnes KPA171202] Length = 307 Score = 177 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 58/198 (29%), Positives = 95/198 (47%), Gaps = 4/198 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +AL +A + + G I +PT+TVYG+ D+ N A++RL K+R P VSD Sbjct: 75 EDALEQAADAIADGECIVLPTDTVYGIGADALNALAVQRLLNAKERGRDMPPPVLVSDSV 134 Query: 69 MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 + P + LA+ +WPG LTLVL + + T T RVP + Sbjct: 135 ALPALCQHIPAGAKALAEKYWPGGLTLVLRAQESLGMDLGETNG--TLAVRVPDQDQTRE 192 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + PLA+ SAN+SG + + + + E+ + +D G S++G STI++ Sbjct: 193 LLRMTGPLAVSSANKSGHPAALTAQEA-ADQLGVEVAVYLDAGPSRVGESSTIIDFVSTT 251 Query: 188 KVRILRPGGLEIETLKRA 205 +++R G L +E + Sbjct: 252 DGKVVRQGALSLEAIHEV 269 >gi|314923484|gb|EFS87315.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL001PA1] gi|315103527|gb|EFT75503.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL050PA2] Length = 290 Score = 177 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 58/198 (29%), Positives = 95/198 (47%), Gaps = 4/198 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +AL +A + + G I +PT+TVYG+ D+ N A++RL K+R P VSD Sbjct: 58 EDALEQAADAIADGECIVLPTDTVYGIGADALNALAVQRLLNAKERGRDMPPPVLVSDSV 117 Query: 69 MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 + P + LA+ +WPG LTLVL + + T T RVP + Sbjct: 118 ALPALCQHIPAGAKALAEKYWPGGLTLVLRAQESLGMDLGETNG--TLAVRVPDQDQTRE 175 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + PLA+ SAN+SG + + + + E+ + +D G S++G STI++ Sbjct: 176 LLRMTGPLAVSSANKSGHPAALTAQEA-ADQLGVEVAVYLDAGPSRVGESSTIIDFVSTT 234 Query: 188 KVRILRPGGLEIETLKRA 205 +++R G L +E + Sbjct: 235 DGKVVRQGALSLEAIHEV 252 >gi|227542626|ref|ZP_03972675.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium glucuronolyticum ATCC 51866] gi|227181824|gb|EEI62796.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium glucuronolyticum ATCC 51866] Length = 189 Score = 177 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 49/190 (25%), Positives = 89/190 (46%), Gaps = 5/190 (2%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 ++AG + IPT+TVYG+ ++ NP A+ +L + K R P+ V V+ + Sbjct: 1 MEAGRLVVIPTDTVYGIGCNAFNPEAVNKLLQAKHRGPDMPVPVLVGSWDTVRGLSRDYT 60 Query: 79 LSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAI 137 ++ L + FWPG L++V+ + + T + R+P + P+A+ Sbjct: 61 RQMNVLIEAFWPGGLSIVVPQAPSLTWNLGDTNG--SVMLRMPLQKLAIELLQKTGPMAV 118 Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197 SAN SGQ N + + + + ++GG ++IG STI+++ ILR G + Sbjct: 119 SSANISGQPPALNAREA-EEQLGNSVSVYLEGGQAEIGTPSTIIDLTQATP-TILREGAI 176 Query: 198 EIETLKRAIS 207 E + + Sbjct: 177 PSEKIFEVLK 186 >gi|289425314|ref|ZP_06427091.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes SK187] gi|289428531|ref|ZP_06430215.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes J165] gi|295130810|ref|YP_003581473.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes SK137] gi|289154292|gb|EFD02980.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes SK187] gi|289158225|gb|EFD06444.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes J165] gi|291376823|gb|ADE00678.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes SK137] gi|315077780|gb|EFT49831.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL053PA2] Length = 287 Score = 177 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 58/198 (29%), Positives = 95/198 (47%), Gaps = 4/198 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +AL +A + + G I +PT+TVYG+ D+ N A++RL K+R P VSD Sbjct: 55 EDALEQAADAIADGECIVLPTDTVYGIGADALNALAVQRLLNAKERGRDMPPPVLVSDSV 114 Query: 69 MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 + P + LA+ +WPG LTLVL + + T T RVP + Sbjct: 115 ALPALCQHIPAGAKALAEKYWPGGLTLVLRAQESLGMDLGETNG--TLAVRVPDQDQTRE 172 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + PLA+ SAN+SG + + + + E+ + +D G S++G STI++ Sbjct: 173 LLRMTGPLAVSSANKSGHPAALTAQEA-ADQLGVEVAVYLDAGPSRVGESSTIIDFVSTT 231 Query: 188 KVRILRPGGLEIETLKRA 205 +++R G L +E + Sbjct: 232 DGKVVRQGALSLEAIHEV 249 >gi|299137093|ref|ZP_07030276.1| Sua5/YciO/YrdC/YwlC family protein [Acidobacterium sp. MP5ACTX8] gi|298601608|gb|EFI57763.1| Sua5/YciO/YrdC/YwlC family protein [Acidobacterium sp. MP5ACTX8] Length = 243 Score = 177 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 61/202 (30%), Positives = 101/202 (50%), Gaps = 6/202 (2%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 +S + + + L++G +A+PT+T YGLAVD N A+ R+Y++K R PL ++D+ Sbjct: 43 ESAHIDRVVQHLNSGEVVALPTDTFYGLAVDPVNLRAVDRIYDLKSRARHKPLSLLIADV 102 Query: 68 SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125 + + A +D LA+ FWPGPLT+++ S + TAN RVP + Sbjct: 103 AQAYELARGIDTAFDRLAERFWPGPLTIIVKAGSKLPLR--VTANTGNVALRVPEAPICR 160 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 ++ G P+ SAN G + + +IPLI+DGG + + +TIV++ Sbjct: 161 AVVAKLGLPITATSANLRGLPEC-SYAGCVRDQFGDKIPLIVDGGPTSRSMATTIVDLSG 219 Query: 186 EK-KVRILRPGGLEIETLKRAI 206 ILR G + + A+ Sbjct: 220 GGNSWMILREGAIPTHEIALAL 241 >gi|206575970|ref|YP_002239002.1| Sua5/YciO/YrdC/YwlC family protein [Klebsiella pneumoniae 342] gi|288935910|ref|YP_003439969.1| Sua5/YciO/YrdC/YwlC family protein [Klebsiella variicola At-22] gi|290512944|ref|ZP_06552308.1| Sua5/YciO/YrdC/YwlC family protein [Klebsiella sp. 1_1_55] gi|206565028|gb|ACI06804.1| Sua5/YciO/YrdC/YwlC family protein [Klebsiella pneumoniae 342] gi|288890619|gb|ADC58937.1| Sua5/YciO/YrdC/YwlC family protein [Klebsiella variicola At-22] gi|289774557|gb|EFD82561.1| Sua5/YciO/YrdC/YwlC family protein [Klebsiella sp. 1_1_55] Length = 206 Score = 177 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 79/188 (42%), Gaps = 4/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A E + G I PT++ Y L + A+ R+ I++ P + D+S Sbjct: 14 ARLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKGAMERICRIRQLPDGHNFTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD ++ L K PG T +L L KT RVP + L Sbjct: 74 ELSTYAFVDNVAFRLMKNNTPGNYTFILKGTKEVP-RRLLQEKRKTIGMRVPSNPIAQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +ET G P+ S G + + + K + LII GG +T++++ + Sbjct: 133 LETLGEPMLSTSLMLPGSDFTESDPEEIKDRLEKVVDLIIHGGFLGQ-QPTTVIDLTEDT 191 Query: 188 KVRILRPG 195 V +LR G Sbjct: 192 PV-VLREG 198 >gi|282853792|ref|ZP_06263129.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes J139] gi|282583245|gb|EFB88625.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes J139] Length = 287 Score = 177 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 58/198 (29%), Positives = 95/198 (47%), Gaps = 4/198 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +AL +A + + G I +PT+TVYG+ D+ N A++RL K+R P VSD Sbjct: 55 EDALEQAADAIADGECIVLPTDTVYGIGADALNALAVQRLLNAKERGRDMPPPVLVSDSV 114 Query: 69 MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 + P + LA+ +WPG LTLVL + + T T RVP + Sbjct: 115 ALPALCQHIPAGAKALAEKYWPGGLTLVLRAQESLGMDLGETNG--TLAVRVPDQDQTRE 172 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + PLA+ SAN+SG + + + + E+ + +D G S++G STI++ Sbjct: 173 LLRMTGPLAVSSANKSGHPAALTAQEA-ADQLGVEVAVYLDAGPSRVGESSTIIDFVSTT 231 Query: 188 KVRILRPGGLEIETLKRA 205 +++R G L +E + Sbjct: 232 DGKVVRQGALSLEAIHEV 249 >gi|332886163|gb|EGK06407.1| Sua5/YciO/YrdC/YwlC family protein [Dysgonomonas mossii DSM 22836] Length = 202 Score = 177 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 52/196 (26%), Positives = 91/196 (46%), Gaps = 10/196 (5%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR-PAMNPLICHVSD 66 + + + L G I PT+TVY + D+ N A+ + ++K PA + L D Sbjct: 11 NQKEIDRVVSVLQDGGLIIYPTDTVYAIGCDALNVRAVEEICKMKDINPAKSNLSIICYD 70 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTK 125 +S + ++A VD L K PGP T +L+ S+ P N KT R+P + Sbjct: 71 LSNISEYAKVDNAIFKLMKKNLPGPFTFILNTTSSL---PKIYKNKKTVGIRIPDNNIIR 127 Query: 126 KLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNV 183 +L+ G+P+ S + + T ++ ++ ++IDGG G+E ST+V+ Sbjct: 128 ELVRNLGNPILTTSVKDEDEVVEYTTDPELIYEKYQDKVDIVIDGGFG--GIEGSTVVDC 185 Query: 184 QCEKKVRILRPGGLEI 199 ++ I+R G E+ Sbjct: 186 TSDEP-EIIRQGKGEL 200 >gi|110637486|ref|YP_677693.1| translation factor SUA5 [Cytophaga hutchinsonii ATCC 33406] gi|110280167|gb|ABG58353.1| translation factor SUA5 [Cytophaga hutchinsonii ATCC 33406] Length = 208 Score = 177 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 49/197 (24%), Positives = 84/197 (42%), Gaps = 8/197 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSDIS 68 N + A E + G + PT+TVY + D N A+ R+ +K +P L D+S Sbjct: 16 NKILTAVEIIRKGGIVIYPTDTVYAIGCDIHNQKAVERVCRLKNIQPGKINLSFICQDLS 75 Query: 69 MVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + ++ P + K PGP T +L+ + ++ + KT RVP + Sbjct: 76 HISEYTKALPTQVFKVMKQVLPGPYTFILN--ANNNVPNILNTKKKTIGIRVPDNRIVQL 133 Query: 127 LIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 L++ G+P+ S +I T + + +IIDGG STI++ Sbjct: 134 LLKELGNPILSTSIKNEDEILEYTTDPEEIYERYKNVVDVIIDGGFGG-NEASTILDCTG 192 Query: 186 EKKVRILRPGGLEIETL 202 + + ++R G IE L Sbjct: 193 NE-IEVIREGKGSIEEL 208 >gi|260768729|ref|ZP_05877663.1| YrdC family protein [Vibrio furnissii CIP 102972] gi|260616759|gb|EEX41944.1| YrdC family protein [Vibrio furnissii CIP 102972] gi|315180432|gb|ADT87346.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio furnissii NCTC 11218] Length = 206 Score = 177 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 78/189 (41%), Gaps = 4/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A + G + PT++ Y L N A+ R+ +I++ + D+S Sbjct: 14 ARLITQAVAIIRNGGVVVYPTDSGYALGCQLENKHALERICQIRRLDDKHNFTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD + L K PGP T + L A KT RVP L Sbjct: 74 ELSLYARVDNTAFRLLKNNTPGPYTFIFKGTKEVP-RRLMNAKRKTIGIRVPNNQIALDL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL S G + + + + + +I++GG +T+V+ + Sbjct: 133 LEAMGEPLMSTSLILPGNETTESDPEEIRDRLEHAVDVILNGGYLGE-QPTTVVDF-SDD 190 Query: 188 KVRILRPGG 196 +++++R G Sbjct: 191 EMQVVRFGA 199 >gi|257464356|ref|ZP_05628733.1| SUA5 protein [Fusobacterium sp. D12] gi|317061861|ref|ZP_07926346.1| SUA5 protein [Fusobacterium sp. D12] gi|313687537|gb|EFS24372.1| SUA5 protein [Fusobacterium sp. D12] Length = 202 Score = 177 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 58/199 (29%), Positives = 102/199 (51%), Gaps = 8/199 (4%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 ++ E + G I PT+TVYG+A ++ A+ LY+ K R +PLI V + + + Sbjct: 6 KEIGEQVKKGALIIYPTDTVYGIAASMQSEEALIHLYQAKSRNFSSPLIALVDSVERISE 65 Query: 73 HASVDPLSLH---LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 A +D L+K FWPG LT++L + + + + T R+P ++I Sbjct: 66 IAYIDNKKEELETLSKAFWPGGLTVILP--AKDCVPKIMISGGNTVGVRIPNHKMALEII 123 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 G L SAN SG+ + ++ + LS +I ++ ++IDGG+ +G STI++ + Sbjct: 124 RAAGGILPTTSANISGEATPSSYQE-LSEAIKQKADIVIDGGVCPVGEASTILDFTKD-S 181 Query: 189 VRILRPGGLEIETLKRAIS 207 ++ILR G + E ++ I Sbjct: 182 LQILRLGAITKEEIEAVIG 200 >gi|314981453|gb|EFT25547.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL110PA3] gi|315092117|gb|EFT64093.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL110PA4] Length = 290 Score = 177 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 58/198 (29%), Positives = 95/198 (47%), Gaps = 4/198 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +AL +A + + G I +PT+TVYG+ D+ N A++RL K+R P VSD Sbjct: 58 EDALEQAADAIADGECIVLPTDTVYGIGADALNALAVQRLLNAKERGRDMPPPVLVSDSV 117 Query: 69 MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 + P + LA+ +WPG LTLVL + + T T RVP + Sbjct: 118 ALPALCQHIPAGAKALAEKYWPGGLTLVLRAQESLGMDLGETNG--TLAVRVPDQDQTRE 175 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + PLA+ SAN+SG + + + + E+ + +D G S++G STI++ Sbjct: 176 LLRMTGPLAVSSANKSGHPAALTAQEA-ADQLGVEVAVYLDAGPSRVGESSTIIDFVSTT 234 Query: 188 KVRILRPGGLEIETLKRA 205 +++R G L +E + Sbjct: 235 DGKVVRQGALSLEAIHEV 252 >gi|313772060|gb|EFS38026.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL074PA1] gi|313791910|gb|EFS40011.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL110PA1] gi|313801608|gb|EFS42848.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL110PA2] gi|313810260|gb|EFS47981.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL083PA1] gi|313818788|gb|EFS56502.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL046PA2] gi|313820560|gb|EFS58274.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL036PA1] gi|313822635|gb|EFS60349.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL036PA2] gi|313825432|gb|EFS63146.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL063PA1] gi|313830590|gb|EFS68304.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL007PA1] gi|313833626|gb|EFS71340.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL056PA1] gi|313838321|gb|EFS76035.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL086PA1] gi|314924925|gb|EFS88756.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL036PA3] gi|314960550|gb|EFT04652.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL002PA2] gi|314962566|gb|EFT06666.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL082PA1] gi|314973591|gb|EFT17687.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL053PA1] gi|314975813|gb|EFT19908.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL045PA1] gi|314978721|gb|EFT22815.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL072PA2] gi|314983708|gb|EFT27800.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL005PA1] gi|314987889|gb|EFT31980.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL005PA2] gi|314989700|gb|EFT33791.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL005PA3] gi|315080407|gb|EFT52383.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL078PA1] gi|315084736|gb|EFT56712.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL027PA2] gi|315085420|gb|EFT57396.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL002PA3] gi|315088522|gb|EFT60498.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL072PA1] gi|315095864|gb|EFT67840.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL038PA1] gi|315105834|gb|EFT77810.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL030PA1] gi|327326416|gb|EGE68206.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL096PA2] gi|327443485|gb|EGE90139.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL013PA2] gi|327445688|gb|EGE92342.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL043PA2] gi|327448328|gb|EGE94982.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL043PA1] gi|327453371|gb|EGF00026.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL092PA1] gi|328754697|gb|EGF68313.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL020PA1] gi|328760893|gb|EGF74458.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL099PA1] Length = 290 Score = 177 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 58/198 (29%), Positives = 95/198 (47%), Gaps = 4/198 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +AL +A + + G I +PT+TVYG+ D+ N A++RL K+R P VSD Sbjct: 58 EDALEQAADAIADGECIVLPTDTVYGIGADALNALAVQRLLNAKERGRDMPPPVLVSDSV 117 Query: 69 MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 + P + LA+ +WPG LTLVL + + T T RVP + Sbjct: 118 ALPALCQHIPAGAKALAEKYWPGGLTLVLRAQESLGMDLGETNG--TLAVRVPDQDQTRE 175 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + PLA+ SAN+SG + + + + E+ + +D G S++G STI++ Sbjct: 176 LLRMTGPLAVSSANKSGHPAALTAQEA-ADQLGVEVAVYLDAGPSRVGESSTIIDFVSTT 234 Query: 188 KVRILRPGGLEIETLKRA 205 +++R G L +E + Sbjct: 235 DGKVVRQGALSLEAIHEV 252 >gi|152969813|ref|YP_001334922.1| hypothetical protein KPN_01259 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238894321|ref|YP_002919055.1| hypothetical protein KP1_2300 [Klebsiella pneumoniae NTUH-K2044] gi|262043011|ref|ZP_06016154.1| Sua5/YciO/YrdC/YwlC family protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330002627|ref|ZP_08304382.1| Sua5/YciO/YrdC/YwlC family protein [Klebsiella sp. MS 92-3] gi|150954662|gb|ABR76692.1| hypothetical protein KPN_01259 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238546637|dbj|BAH62988.1| hypothetical protein KP1_2300 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259039613|gb|EEW40741.1| Sua5/YciO/YrdC/YwlC family protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328537247|gb|EGF63508.1| Sua5/YciO/YrdC/YwlC family protein [Klebsiella sp. MS 92-3] Length = 206 Score = 177 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 79/188 (42%), Gaps = 4/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A E + G I PT++ Y L + A+ R+ I++ P + D+S Sbjct: 14 ARLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKGAMERICRIRQLPDGHNFTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD ++ L K PG T +L L KT RVP + L Sbjct: 74 ELSTYAFVDNVAFRLMKNNTPGNYTFILKGTKEVP-RRLLQEKRKTIGMRVPSNPIAQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +ET G P+ S G + + + K + LII GG +T++++ + Sbjct: 133 LETLGEPMLSTSLMLPGSDFTESDPEEIKDRLEKVVDLIIHGGFLGQ-QPTTVIDLTEDT 191 Query: 188 KVRILRPG 195 V +LR G Sbjct: 192 PV-VLREG 198 >gi|317125566|ref|YP_004099678.1| translation factor SUA5 [Intrasporangium calvum DSM 43043] gi|315589654|gb|ADU48951.1| translation factor SUA5 [Intrasporangium calvum DSM 43043] Length = 255 Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats. Identities = 52/198 (26%), Positives = 83/198 (41%), Gaps = 5/198 (2%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVD 77 + G + +PT+TVYG+ D+ + A+ + K R P + A V Sbjct: 24 IRTGRLVVLPTDTVYGVGCDAFDAEAVGAVLAAKGRGRDMPPPVLIPTPRTAHGLATQVP 83 Query: 78 PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAI 137 + L + FWPGPLTLVL S+ +H T RVP + P+A+ Sbjct: 84 DYAQRLMERFWPGPLTLVLKAQSS--LHWDLGETNGTVALRVPDNEVALELLRDIGPMAV 141 Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197 SAN +G + V + + + + +DGG S STI++ ++ R LR G L Sbjct: 142 TSANSTGAPAARTVDEA-EGMLGESVAVYLDGGPSTDAAPSTIIDCTGDEP-RTLRLGAL 199 Query: 198 EIETLKRAISVELEYCVD 215 + ++ VD Sbjct: 200 SQSEIDAVLATGAAPEVD 217 >gi|315224006|ref|ZP_07865847.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga ochracea F0287] gi|314945977|gb|EFS97985.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga ochracea F0287] Length = 206 Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats. Identities = 48/197 (24%), Positives = 82/197 (41%), Gaps = 9/197 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP-LICHVSD 66 + + + E L G I PT+TVYGL D N A+ ++ IK D Sbjct: 13 NEKDINRVVEVLRRGGLIIYPTDTVYGLGCDITNTKALEKIARIKGVKLEKANFSFVCPD 72 Query: 67 ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 + + + +D + L K PGP T ++ + P KT RVP Sbjct: 73 LKNLSDYVKQIDTSTFKLLKRTLPGPYTFIMQGNNNL---PKDFKKKKTVGIRVPDNLIA 129 Query: 125 KKLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + ++E G+P+ S I T ++ ++ L+IDGG + ST++++ Sbjct: 130 RTIVEKLGNPIVSTSIYDEDDVIEYTTDPELIFEKWQNKVDLVIDGGYGD-NVASTVIDL 188 Query: 184 QCEKKVRILRPGGLEIE 200 + V +LR G +I+ Sbjct: 189 SGDAPV-VLREGKGDID 204 >gi|256419763|ref|YP_003120416.1| Sua5/YciO/YrdC/YwlC family protein [Chitinophaga pinensis DSM 2588] gi|256034671|gb|ACU58215.1| Sua5/YciO/YrdC/YwlC family protein [Chitinophaga pinensis DSM 2588] Length = 205 Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats. Identities = 50/198 (25%), Positives = 85/198 (42%), Gaps = 7/198 (3%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR-PAMNPLICHVSD 66 + L+ E L G I PT+TVYG+ D P A+ R+ IK PA D Sbjct: 11 NPRHLKTIVECLKDGGVIIYPTDTVYGMGCDICQPKAVERICRIKHINPAKAQFSFICYD 70 Query: 67 ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124 +S + +A VD + + K PGP T +L ++ + L T RVP + Sbjct: 71 LSHLSDYAKSVDTPTFRMLKKALPGPYTFILS--ASRAVPRLLKQKKDTVGIRVPDNNIS 128 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + +++ G+P+ S + I+ + +++DGGI + ST+V+ Sbjct: 129 RAIVKELGNPILSTSLPIETYVEEYTDPEIIHEKFGSIVDIVVDGGIGGMTF-STVVDCT 187 Query: 185 CEKKVRILRPGGLEIETL 202 ++ ++R G E L Sbjct: 188 GDEP-ELIREGAGSWEEL 204 >gi|269962637|ref|ZP_06176982.1| Sua5/YciO/YrdC family protein [Vibrio harveyi 1DA3] gi|269832560|gb|EEZ86674.1| Sua5/YciO/YrdC family protein [Vibrio harveyi 1DA3] Length = 186 Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats. Identities = 45/185 (24%), Positives = 76/185 (41%), Gaps = 7/185 (3%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + + E L G IA PTE V+G+ D NP AI++L E+K+RP LI + Sbjct: 3 DNFEQVLEALQKGEVIAYPTEGVFGVGCDPDNPEAIQKLLELKQRPVEKGLILIAASYEQ 62 Query: 70 VKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + + L+ WPGP T ++ ++ + + + RV + Sbjct: 63 LLPYVDESQLTQEQLDKVHATWPGPYTWIMP--ASDKVSHWVSGQFDSIAVRVTDHPLVQ 120 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 K+ +G PL SAN +G K + + + I+ G S S I + + Sbjct: 121 KMCNAFGKPLTSTSANLTGLPPCMTTKEV-EEQLGGRLVAILRGETSGRDKPSEIRDAKT 179 Query: 186 EKKVR 190 + +R Sbjct: 180 SQILR 184 >gi|327331709|gb|EGE73446.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL096PA3] Length = 290 Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats. Identities = 58/198 (29%), Positives = 95/198 (47%), Gaps = 4/198 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +AL +A + + G I +PT+TVYG+ D+ N A++RL K+R P VSD Sbjct: 58 EDALEQAADAIADGECIVLPTDTVYGIGADALNALAVQRLLNAKERGRDMPPPVLVSDSV 117 Query: 69 MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 + P + LA+ +WPG LTLVL + + T T RVP + Sbjct: 118 ALPALCQHIPAGAKALAEKYWPGGLTLVLRAQESLGMDLGETNG--TLAVRVPDQDQTRE 175 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + PLA+ SAN+SG + + + + E+ + +D G S++G STI++ Sbjct: 176 LLRMTGPLAVSSANKSGHPAALTAQEA-ADQLGVEVAVYLDAGPSRVGESSTIIDFVSTT 234 Query: 188 KVRILRPGGLEIETLKRA 205 +++R G L +E + Sbjct: 235 DGKVVRQGALSLEAIHEV 252 >gi|149190890|ref|ZP_01869153.1| hypothetical protein VSAK1_01032 [Vibrio shilonii AK1] gi|148835245|gb|EDL52219.1| hypothetical protein VSAK1_01032 [Vibrio shilonii AK1] Length = 206 Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 74/189 (39%), Gaps = 4/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A + G I PT++ Y L N A+ R+ +I++ + D+S Sbjct: 14 ARLINQAVAIVRNGGVIIYPTDSGYALGCQLENKQALERICQIRRLDDKHNFTLLCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD + L K PGP T + L KT RVP L Sbjct: 74 ELSLYARVDNTAFRLLKNNTPGPYTFIFKGTKEVP-RRLMNPKRKTIGIRVPDNQIALDL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL S G + + + + I++GG +T+++ + Sbjct: 133 LEALGEPLMSTSLILPGNEVTESDPEEIRDQLEHAVDCILNGGYLGE-QPTTVIDF-SDD 190 Query: 188 KVRILRPGG 196 + ++LR G Sbjct: 191 EAKVLRTGA 199 >gi|332675654|gb|AEE72470.1| SUA5 related protein [Propionibacterium acnes 266] Length = 280 Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats. Identities = 58/198 (29%), Positives = 95/198 (47%), Gaps = 4/198 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +AL +A + + G I +PT+TVYG+ D+ N A++RL K+R P VSD Sbjct: 48 EDALEQAADAIADGECIVLPTDTVYGIGADALNALAVQRLLNAKERGRDMPPPVLVSDSV 107 Query: 69 MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 + P + LA+ +WPG LTLVL + + T T RVP + Sbjct: 108 ALPALCQHIPAGAKALAEKYWPGGLTLVLRAQESLGMDLGETNG--TLAVRVPDQDQTRE 165 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + PLA+ SAN+SG + + + + E+ + +D G S++G STI++ Sbjct: 166 LLRMTGPLAVSSANKSGHPAALTAQEA-ADQLGVEVAVYLDAGPSRVGESSTIIDFVSTT 224 Query: 188 KVRILRPGGLEIETLKRA 205 +++R G L +E + Sbjct: 225 DGKVVRQGALSLEAIHEV 242 >gi|313807751|gb|EFS46238.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL087PA2] Length = 290 Score = 176 bits (448), Expect = 3e-42, Method: Composition-based stats. Identities = 58/198 (29%), Positives = 95/198 (47%), Gaps = 4/198 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +AL +A + + G I +PT+TVYG+ D+ N A++RL K+R P VSD Sbjct: 58 EDALEQAADAIADGECIVLPTDTVYGIGADALNTLAVQRLLNAKERGRDMPPPVLVSDSV 117 Query: 69 MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 + P + LA+ +WPG LTLVL + + T T RVP + Sbjct: 118 ALPALCQHIPAGAKALAEKYWPGGLTLVLRAQESLGMDLGETNG--TLAVRVPDQDQTRE 175 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + PLA+ SAN+SG + + + + E+ + +D G S++G STI++ Sbjct: 176 LLRMTGPLAVSSANKSGHPAALTAQEA-ADQLGVEVAVYLDAGPSRVGESSTIIDFVSTT 234 Query: 188 KVRILRPGGLEIETLKRA 205 +++R G L +E + Sbjct: 235 DGKVVRQGALSLEAIHEV 252 >gi|260776102|ref|ZP_05884997.1| YrdC family protein [Vibrio coralliilyticus ATCC BAA-450] gi|260607325|gb|EEX33590.1| YrdC family protein [Vibrio coralliilyticus ATCC BAA-450] Length = 206 Score = 176 bits (448), Expect = 3e-42, Method: Composition-based stats. Identities = 43/196 (21%), Positives = 76/196 (38%), Gaps = 4/196 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A + G + PT++ Y L N A+ R+ +I++ + D+S Sbjct: 14 ARLINQAVAIIRNGGVVIYPTDSGYALGCQLENKQALERICKIRRLDEKHNFTLLCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD + L K PGP T + L + KT RVP L Sbjct: 74 ELSLYARVDNTAFRLLKNNTPGPYTFIFKGTKEVP-RRLMNSKRKTIGIRVPDNQIALDL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL S G + + + + I++GG +T+V+ ++ Sbjct: 133 LEALGEPLMSTSLILPGNDVTESDPEEIRDKLEHAVDCILNGGYLGE-QPTTVVDFSDDE 191 Query: 188 KVRILRPGGLEIETLK 203 V I R G + + Sbjct: 192 PV-IARVGSGDPAAFE 206 >gi|323526589|ref|YP_004228742.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. CCGE1001] gi|323383591|gb|ADX55682.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. CCGE1001] Length = 211 Score = 176 bits (448), Expect = 3e-42, Method: Composition-based stats. Identities = 50/189 (26%), Positives = 84/189 (44%), Gaps = 3/189 (1%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A + ++ G +A+PT++ Y LA + A+ RL I+ L V D+S Sbjct: 14 PRLVKQAVQIINDGGVVALPTDSSYALACHLDDKNAVERLRRIRGLDEKQLLSLLVRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + A VD L K PGP VL LS + KT RVP T + Sbjct: 74 ELANFAMVDNRQYRLIKSVTPGPYVFVLQATKEVP-RRLSHPSRKTIGLRVPDHAITLAI 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL S G+ + N + + + K++ L+IDGG + ST++++ ++ Sbjct: 133 LGELGQPLLGSSLILPGETAPLNDPEDIRARLEKQLDLVIDGGAC-VCEPSTVIDLTGDE 191 Query: 188 KVRILRPGG 196 V + G Sbjct: 192 PVLVRAGRG 200 >gi|330897267|gb|EGH28686.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. japonica str. M301072PT] Length = 209 Score = 176 bits (448), Expect = 3e-42, Method: Composition-based stats. Identities = 49/190 (25%), Positives = 86/190 (45%), Gaps = 6/190 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E + AG + PT++ Y L + +AI R+ +++ + D+S Sbjct: 14 PRLIKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKK 126 + A VD + K PGP T +L+ +T ++ L +T RVP + Sbjct: 74 QLGLFAKVDTGAFRALKAHTPGPYTFILN--ATREVPRLVLHPKRRTIGLRVPSHPIAQA 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+E G PL S G + + + + ++ LIIDGGI ST++N+ E Sbjct: 132 LLEQLGEPLMSVSLIMPGDSVPLSDPYEMRQILEHQVDLIIDGGIGGFS-ASTVINL-AE 189 Query: 187 KKVRILRPGG 196 + +I+R G Sbjct: 190 GEPQIVRVGC 199 >gi|300789603|ref|YP_003769894.1| SUA5/YciO/YrdC/YwlC family protein [Amycolatopsis mediterranei U32] gi|299799117|gb|ADJ49492.1| SUA5/YciO/YrdC/YwlC family protein [Amycolatopsis mediterranei U32] Length = 216 Score = 176 bits (448), Expect = 3e-42, Method: Composition-based stats. Identities = 49/197 (24%), Positives = 86/197 (43%), Gaps = 5/197 (2%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-VD 77 + + + +PT+TVYG+ D+ + A++ L K R P+ V S V V Sbjct: 24 VRSSRLVVLPTDTVYGIGADAFDAGAVQALLRAKNRGPDMPVGVLVGSWSTVDGLVLGVP 83 Query: 78 PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAI 137 P + L + FWPG L++VL + + T R+P + P+A+ Sbjct: 84 PQARALIEAFWPGDLSIVLPHAPSLQWN--LGDARGTVMLRMPLHPVALELLRDVGPMAV 141 Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197 SAN SG+ + + + + + +DGG S + S+IV++ + V +LR G + Sbjct: 142 SSANVSGRPPASTAQEA-QEQLGDSVAVYLDGGSSGEAVASSIVDLTGTEPV-VLREGAV 199 Query: 198 EIETLKRAISVELEYCV 214 E + + V E Sbjct: 200 GKEAIAEVLGVPAESLA 216 >gi|325103134|ref|YP_004272788.1| Sua5/YciO/YrdC/YwlC family protein [Pedobacter saltans DSM 12145] gi|324971982|gb|ADY50966.1| Sua5/YciO/YrdC/YwlC family protein [Pedobacter saltans DSM 12145] Length = 206 Score = 176 bits (448), Expect = 3e-42, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 88/198 (44%), Gaps = 8/198 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSD 66 + +++ + L G I PT+T+YG+ D N AI ++ ++K +P D Sbjct: 11 NEKQVQQVVDILKKGGIIIYPTDTIYGMGCDITNQKAIEKIAQLKGIKPEKANFSFVCHD 70 Query: 67 ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124 +S + ++ +D + L K PG T + + + +++ L + KT RVP Sbjct: 71 LSHISQYVKPLDNSTFRLLKKALPGAFTFIFE--ANSNVPKLLASKKKTVGIRVPDNNIA 128 Query: 125 KKLIETYGHPLAIPSANRSGQIS-ITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 ++++ G+P+ S +I + ++ + +++DGG + ST+V+ Sbjct: 129 REIVRMLGNPILSTSIRDDDEIIEYSTDPELIYEKYKDLVDVVVDGGYGN-NVASTVVDC 187 Query: 184 QCEKKVRILRPGGLEIET 201 E I+R G +E Sbjct: 188 T-EGDFEIVRQGLGNLEE 204 >gi|325519096|gb|EGC98583.1| Sua5/YciO/YrdC/YwlC [Burkholderia sp. TJI49] Length = 210 Score = 176 bits (448), Expect = 3e-42, Method: Composition-based stats. Identities = 51/193 (26%), Positives = 85/193 (44%), Gaps = 4/193 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E ++ G IA+PT++ Y LA + A+ R+ I+ L V D+S Sbjct: 14 PRLIKQAVEIVNKGGVIAMPTDSSYALACHLDDKDAVERVRRIRGLDEKQHLSLLVRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + A VD L K PGP +L LS + KT RVP T L Sbjct: 74 ELANFAMVDNRQYRLIKSVTPGPYVFILQATKEVP-RRLSHPSRKTIGLRVPDHAITLAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL + N + + + K++ L+IDGG ST++++ ++ Sbjct: 133 LEALGQPLLGTTLILPPDDEPLNDPEEIRARLEKQVDLVIDGGACPR-EPSTVIDLTGDE 191 Query: 188 KVRILRPGGLEIE 200 +++R G +E Sbjct: 192 P-QLVRAGRGALE 203 >gi|237731719|ref|ZP_04562200.1| conserved hypothetical protein [Citrobacter sp. 30_2] gi|226907258|gb|EEH93176.1| conserved hypothetical protein [Citrobacter sp. 30_2] Length = 206 Score = 176 bits (448), Expect = 3e-42, Method: Composition-based stats. Identities = 45/188 (23%), Positives = 75/188 (39%), Gaps = 4/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A E + G I PT++ Y L + A+ R+ I+ P + D+S Sbjct: 14 QRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKGAMERICRIRHLPDGHNFTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + ++ VD ++ L K PG T +L L KT RVP L Sbjct: 74 ELSTYSFVDNVAFRLIKNNTPGNYTFILKGTKEVP-RRLLQEKRKTIGLRVPSNPIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G P+ S G + + + K + LII GG +T++++ + Sbjct: 133 LEALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKLVDLIIHGGYLGQ-QPTTVIDLTDDS 191 Query: 188 KVRILRPG 195 V +LR G Sbjct: 192 PV-VLREG 198 >gi|296102093|ref|YP_003612239.1| hypothetical protein ECL_01732 [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056552|gb|ADF61290.1| hypothetical protein ECL_01732 [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 206 Score = 176 bits (448), Expect = 3e-42, Method: Composition-based stats. Identities = 46/188 (24%), Positives = 77/188 (40%), Gaps = 4/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A E + G I PT++ Y L + A+ R+ I++ P + D+S Sbjct: 14 PRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKAAMERICRIRQLPDGHNFTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD ++ L K PG T +L L KT RVP + L Sbjct: 74 ELSTYAYVDNVAFRLIKNNTPGNYTFILKGTKEVP-RRLLQEKRKTIGMRVPSNPIAQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +ET G P+ S G + + + K + LII GG +T+V++ + Sbjct: 133 LETLGEPMLSTSLMLPGSEFTESDPEEIKDRLEKVVELIIHGGYLGQ-QPTTVVDLTEDA 191 Query: 188 KVRILRPG 195 ++R G Sbjct: 192 P-EVIREG 198 >gi|91228667|ref|ZP_01262582.1| putative translation factor [Vibrio alginolyticus 12G01] gi|254230518|ref|ZP_04923890.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio sp. Ex25] gi|262393862|ref|YP_003285716.1| YrdC family protein [Vibrio sp. Ex25] gi|269967048|ref|ZP_06181116.1| conserved hypothetical protein [Vibrio alginolyticus 40B] gi|91187788|gb|EAS74105.1| putative translation factor [Vibrio alginolyticus 12G01] gi|151936966|gb|EDN55852.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio sp. Ex25] gi|262337456|gb|ACY51251.1| YrdC family protein [Vibrio sp. Ex25] gi|269828307|gb|EEZ82573.1| conserved hypothetical protein [Vibrio alginolyticus 40B] Length = 206 Score = 176 bits (448), Expect = 4e-42, Method: Composition-based stats. Identities = 41/196 (20%), Positives = 77/196 (39%), Gaps = 4/196 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A + G + PT++ Y L N A+ R+ +I++ + D+S Sbjct: 14 ARLINQAVAIIRNGGVVVYPTDSGYALGCQLENKQALERICQIRRLDDKHNFTLLCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD + L K PGP T + L A KT RVP L Sbjct: 74 ELSLYARVDNSAFRLLKNNTPGPYTFIFKGTKEVP-RRLMNAKRKTIGIRVPDNQIALDL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G P+ S G + + + + +I++GG +T+++ + Sbjct: 133 LEALGEPMMSTSLILPGSDVTESDPEDIRDKLEHAVDVILNGGYLGE-QPTTVIDFSEGE 191 Query: 188 KVRILRPGGLEIETLK 203 V ++R G + + Sbjct: 192 PV-VVRLGSGDPAPFE 206 >gi|271963196|ref|YP_003337392.1| Sua5_yciO_yrdC, YrdC domain-containing protein [Streptosporangium roseum DSM 43021] gi|270506371|gb|ACZ84649.1| Sua5_yciO_yrdC, YrdC domain protein [Streptosporangium roseum DSM 43021] Length = 221 Score = 176 bits (448), Expect = 4e-42, Method: Composition-based stats. Identities = 53/211 (25%), Positives = 86/211 (40%), Gaps = 5/211 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + L A + G + +PT+TVYG+ D+ P+A+ L E K R P+ V + Sbjct: 14 AAGLTDAASAVRRGELVVLPTDTVYGIGADAFTPSAVTSLLEAKGRGRDMPVPVLVGTVR 73 Query: 69 MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 + P L FWPGPLTL+ + + + T R+P Sbjct: 74 AANALVENLGPYGQDLVDSFWPGPLTLIC--RANRSLSWDLGDSKGTVAIRMPLHSVALE 131 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + P+A+ SANRSG + + + + +DGG STI+++ Sbjct: 132 LLKETGPMAVSSANRSGAPAAITAA-DAEKQLGDSVAVYLDGGPCADDTPSTILDLTTAV 190 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETS 218 R+LR G + +E L+ I E+ Sbjct: 191 P-RLLRRGAVSVEKLRGVIGYVATDAGPESD 220 >gi|258622997|ref|ZP_05718012.1| Sua5/YciO/YrdC family protein [Vibrio mimicus VM573] gi|258584780|gb|EEW09514.1| Sua5/YciO/YrdC family protein [Vibrio mimicus VM573] Length = 185 Score = 176 bits (447), Expect = 4e-42, Method: Composition-based stats. Identities = 51/190 (26%), Positives = 87/190 (45%), Gaps = 10/190 (5%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + L++A L +G IA PTE V+GL D N A+ RL IK+RP +I ++ Sbjct: 2 DNLQQAVHVLQSGGVIAYPTEGVFGLGCDPDNQAAMLRLLAIKQRPIEKGVILIAANYEQ 61 Query: 70 VKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 ++ + + L+ WP PLT V+ ++ T RV + Sbjct: 62 LRPYIDENQLTADQLAQVLASWPAPLTWVMP--ASIHTPSWVRGQFDTVAVRVSNHPLVQ 119 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +L +G PL SAN SGQ + T + ++ + + +I +++G S S I + + Sbjct: 120 QLCLAFGKPLTSTSANLSGQPACTTQQEVV-AQLGNQIETLLEGKTSGHCGPSEIRDARS 178 Query: 186 EKKVRILRPG 195 +++LR G Sbjct: 179 ---LQVLRQG 185 >gi|323497600|ref|ZP_08102617.1| hypothetical protein VISI1226_22275 [Vibrio sinaloensis DSM 21326] gi|323317349|gb|EGA70343.1| hypothetical protein VISI1226_22275 [Vibrio sinaloensis DSM 21326] Length = 206 Score = 176 bits (447), Expect = 4e-42, Method: Composition-based stats. Identities = 42/196 (21%), Positives = 76/196 (38%), Gaps = 4/196 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A + G + PT++ Y L N A+ R+ +I++ + D+S Sbjct: 14 ARLINQAVAIIRNGGVVVYPTDSGYALGCQLENKQALERICQIRRLNEKHNFTLLCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD + L K PGP T + L + KT RVP L Sbjct: 74 ELSLYARVDNTAFRLLKNNTPGPYTFIFKGTKEVP-RRLMNSKRKTIGIRVPDNRIALDL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G P+ S G + + + + I++GG +T+V+ ++ Sbjct: 133 LEALGEPMMSTSLILPGNDYTESDPEDIRDKLEHAVDCILNGGYLGE-QPTTVVDFSEDE 191 Query: 188 KVRILRPGGLEIETLK 203 V I R G + + Sbjct: 192 PV-IARVGAGDPAPFE 206 >gi|167837135|ref|ZP_02464018.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia thailandensis MSMB43] Length = 209 Score = 176 bits (447), Expect = 4e-42, Method: Composition-based stats. Identities = 53/193 (27%), Positives = 86/193 (44%), Gaps = 4/193 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +++A E + G IA+PT++ Y LA + A+ R+ I+ L V D+S Sbjct: 14 TRLVKQAAEIVRGGGVIALPTDSSYALACHLDDKDAVERVRRIRGLDEKQHLSLLVRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + A VD L K PGP +L LS + KT RVP T L Sbjct: 74 ELATFAMVDNRQYRLIKSVTPGPYVFILQATKEVP-RRLSHPSRKTIGLRVPAHAITLAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL + S N + + + K+I L+IDGG ST++++ ++ Sbjct: 133 LEALGQPLLGTTLILSPDDEPLNDPEEIRARLEKQIDLVIDGGACPR-EPSTVIDLTGDE 191 Query: 188 KVRILRPGGLEIE 200 +++R G +E Sbjct: 192 P-QLVRAGRGPLE 203 >gi|300781420|ref|ZP_07091274.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium genitalium ATCC 33030] gi|300533127|gb|EFK54188.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium genitalium ATCC 33030] Length = 221 Score = 176 bits (447), Expect = 4e-42, Method: Composition-based stats. Identities = 50/204 (24%), Positives = 89/204 (43%), Gaps = 5/204 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + A AG + IPT+TVYG+ D+ NP A +L K+R P+ V + Sbjct: 15 KEGIEAATNAARAGQCVVIPTDTVYGIGADAFNPDACAKLLATKRRGPDMPVPVLVGSWT 74 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 ++ + L + FWPG L++V+ + + T T R+P Sbjct: 75 TIQGLVREFTDTAKTLVEAFWPGGLSIVVPEAPSLPWNLGDT--RGTVLLRMPLQPVAIE 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + P+A+ SAN SG+ + + + + +DGG +++G STI+++ Sbjct: 133 LLRETGPMAVSSANISGEAPPVTALGA-RNQFGEAVQVYLDGGKAEVGEPSTIIDISGPS 191 Query: 188 KVRILRPGGLEIETLKRAISVELE 211 + ILR G + E + + + E Sbjct: 192 PI-ILREGAISPERIGGVLGMTPE 214 >gi|311279824|ref|YP_003942055.1| Sua5/YciO/YrdC/YwlC family protein [Enterobacter cloacae SCF1] gi|308749019|gb|ADO48771.1| Sua5/YciO/YrdC/YwlC family protein [Enterobacter cloacae SCF1] Length = 206 Score = 176 bits (447), Expect = 4e-42, Method: Composition-based stats. Identities = 46/188 (24%), Positives = 77/188 (40%), Gaps = 4/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A E + G I PT++ Y L + A+ R+ I+ P + D+S Sbjct: 14 PRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKGAMERICRIRHLPDGHNFTLVCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD ++ L K PG T +L L KT RVP + L Sbjct: 74 ELSTYAYVDNVAFRLIKNNTPGNYTFILKGTKEVP-RRLLQEKRKTIGMRVPSNPIAQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G P+ S G + + + K++ LII GG +T++++ + Sbjct: 133 LEAIGEPMLSTSLMLPGSDFTESDPDEIKDRLEKQVDLIIHGGYLGQ-QPTTVIDLTDDA 191 Query: 188 KVRILRPG 195 V +LR G Sbjct: 192 PV-VLREG 198 >gi|118580209|ref|YP_901459.1| Sua5/YciO/YrdC/YwlC family protein [Pelobacter propionicus DSM 2379] gi|118502919|gb|ABK99401.1| translation factor SUA5 [Pelobacter propionicus DSM 2379] Length = 202 Score = 176 bits (447), Expect = 4e-42, Method: Composition-based stats. Identities = 52/188 (27%), Positives = 87/188 (46%), Gaps = 6/188 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + + L G IA PT+T YG+ N I R+Y +K+R P ++S Sbjct: 12 QRLIARVVDCLRNGGIIAYPTDTTYGIGCSIFNKKGIERIYRMKQREHKKPFSFICPNLS 71 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 V + A V + + K + PGP T VL+ +T D+ L KT R+P ++ Sbjct: 72 EVARFARVSNTAFKILKRYLPGPYTFVLE--ATRDVPDLLLTRQKTVGIRIPDNRICLEI 129 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ G P+ SAN SG T + ++ +++DGGI + S++VN+ + Sbjct: 130 VQMLGSPIVTTSANLSGDE-PTGNPGFIDEIFGHQLDIVVDGGILTKEV-SSVVNLVNDT 187 Query: 188 KVRILRPG 195 I+R G Sbjct: 188 P-EIIRAG 194 >gi|117926737|ref|YP_867354.1| translation factor SUA5 [Magnetococcus sp. MC-1] gi|117610493|gb|ABK45948.1| translation factor SUA5 [Magnetococcus sp. MC-1] Length = 211 Score = 176 bits (447), Expect = 4e-42, Method: Composition-based stats. Identities = 63/207 (30%), Positives = 98/207 (47%), Gaps = 5/207 (2%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 + S LR A + L+ G +A PTET+YGL VD NP A+RRL ++K R A LI V Sbjct: 6 PLYPSEQLRHAVQLLEGGGILAYPTETLYGLGVDPFNPQAVRRLLDLKGREAKKGLILLV 65 Query: 65 SDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCG 122 + + ++ ++ L + FWP PLTLVL + + L T R Sbjct: 66 PNSVALLPLVQPLEAVAQRLIEHFWPAPLTLVLP--AQAGLSSLLTGGTGLVAVRHSSSP 123 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 + + L+ + PL SAN SG +++ ++ +I+ G L ST+V Sbjct: 124 YVQALMAHWQRPLVSTSANPSGSQVQHWSPERIAAEWGGQVDMILAGPYDDGALASTVVK 183 Query: 183 VQCEKKVRILRPGGLEIETLKRAISVE 209 V + V +LR G + L++ I +E Sbjct: 184 VIAGRGV-VLREGAITCAQLQQIIPIE 209 >gi|260771095|ref|ZP_05880023.1| YrdC family protein [Vibrio furnissii CIP 102972] gi|260613984|gb|EEX39175.1| YrdC family protein [Vibrio furnissii CIP 102972] Length = 185 Score = 176 bits (447), Expect = 4e-42, Method: Composition-based stats. Identities = 49/190 (25%), Positives = 80/190 (42%), Gaps = 10/190 (5%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 N + L +G IA PTE V+G+ D NP AI +L ++K+RP LI + Sbjct: 2 NNFEHTLQALQSGEVIAYPTEGVFGVGCDPDNPQAIEKLLQLKQRPVEKGLILIAASYQQ 61 Query: 70 VKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + + L+ + WPGP+T ++ ++ + + T RV + Sbjct: 62 LLPYVDESQLTQEQLERVQSTWPGPVTWIMP--ASERVSHWVSGQFDTIAVRVTDHPLVQ 119 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 KL YG PL SAN SG + + + ++ I+ G S I + Sbjct: 120 KLCLAYGKPLTSTSANLSGLPPCMTTQEV-EQQLGDQLVAILQGETGGRNKPSEIRDA-- 176 Query: 186 EKKVRILRPG 195 K +++LR G Sbjct: 177 -KTLQVLRQG 185 >gi|218778786|ref|YP_002430104.1| Sua5/YciO/YrdC/YwlC family protein [Desulfatibacillum alkenivorans AK-01] gi|218760170|gb|ACL02636.1| Sua5/YciO/YrdC/YwlC family protein [Desulfatibacillum alkenivorans AK-01] Length = 202 Score = 176 bits (447), Expect = 5e-42, Method: Composition-based stats. Identities = 52/195 (26%), Positives = 91/195 (46%), Gaps = 6/195 (3%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + + E L G IA PT+T+YG+ D N AI+++Y +K+ + PL SD+ Sbjct: 13 RKIAQVVEVLKRGGIIAYPTDTIYGIGCDIMNKKAIQKVYRLKQMESTQPLSFICSDLQN 72 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLI 128 + +A V + K PGP T +L+ ++ + + KTA RVP ++I Sbjct: 73 ISDYAKVSNYAYKTMKRLLPGPYTFILE--ASKLVPKIMITKRKTAGIRVPEHAICMEII 130 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 + G+P+ SA +L +I L+IDGG G S++V++ ++ Sbjct: 131 KELGNPIISTSAADLDGNEFM-DPSLLHDYYNNQIDLVIDGGPV-SGRASSVVSLIDDEP 188 Query: 189 VRILRPGGLEIETLK 203 +LR G ++ + Sbjct: 189 -EVLRVGAGDVSIFE 202 >gi|302878814|ref|YP_003847378.1| Sua5/YciO/YrdC/YwlC family protein [Gallionella capsiferriformans ES-2] gi|302581603|gb|ADL55614.1| Sua5/YciO/YrdC/YwlC family protein [Gallionella capsiferriformans ES-2] Length = 209 Score = 176 bits (447), Expect = 5e-42, Method: Composition-based stats. Identities = 43/190 (22%), Positives = 81/190 (42%), Gaps = 4/190 (2%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 + +++A L G + PT++ Y L + A+ R+ EI++ + L D Sbjct: 12 INMRLIKQAVSILKDGGIVVYPTDSCYALGCLLDDKNAVSRIREIRQLDDEHYLTLMCRD 71 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 +S + +A VD L K PG T +L+ L T R+P Sbjct: 72 LSEISNYARVDNAQFRLLKANTPGSYTFILEATREVP-KRLQHPKRSTIGIRIPDHPVAL 130 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 L+E G P++ + ++ N + + K++ +IDGG + + +T++++ Sbjct: 131 ALLEELGEPMSSSTLILPDEVWPLNDAERIRELLEKKVDAVIDGGAAGVDF-TTVIDLTG 189 Query: 186 EKKVRILRPG 195 E V +LR G Sbjct: 190 EHPV-LLRQG 198 >gi|150024959|ref|YP_001295785.1| translation factor [Flavobacterium psychrophilum JIP02/86] gi|149771500|emb|CAL42969.1| Putative translation factor [Flavobacterium psychrophilum JIP02/86] Length = 206 Score = 176 bits (447), Expect = 5e-42, Method: Composition-based stats. Identities = 48/199 (24%), Positives = 85/199 (42%), Gaps = 9/199 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP-LICHVSD 66 + A++K + L G I PT+TVYGL D N A+ R+ +IK D Sbjct: 13 NEAAIKKVVDVLKNGGLIIYPTDTVYGLGCDITNTKALERIAKIKGIKLEKANFSFVCHD 72 Query: 67 ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124 +S + + +D + + K PGP T +L + P T RVP Sbjct: 73 LSNISDYVKQIDTATFKILKRALPGPYTFILPGNNNL---PKEFKKKTTVGIRVPDNNIA 129 Query: 125 KKLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 ++++ G+P+ S + + I T ++ + L+IDGG + STI+++ Sbjct: 130 LEIVKMLGNPIVSTSIHDDDEVIEYTTDPELIFEKWQNLVDLVIDGGYGD-NVGSTIIDL 188 Query: 184 QCEKKVRILRPGGLEIETL 202 + ++R G ++ L Sbjct: 189 SGHEP-EVIREGKGSLDIL 206 >gi|156972719|ref|YP_001443626.1| translation factor [Vibrio harveyi ATCC BAA-1116] gi|212288234|sp|A7N129|RIMN_VIBHB RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|156524313|gb|ABU69399.1| hypothetical protein VIBHAR_00384 [Vibrio harveyi ATCC BAA-1116] Length = 185 Score = 176 bits (446), Expect = 5e-42, Method: Composition-based stats. Identities = 44/182 (24%), Positives = 76/182 (41%), Gaps = 7/182 (3%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 + + L G IA PTE V+G+ D NP AI++L E+K+RP LI + + Sbjct: 5 EQVLKALQTGEVIAYPTEGVFGVGCDPDNPEAIQKLLELKQRPVEKGLILIAASYEQLLP 64 Query: 73 HASVDPLSLHLAK---LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + L+ WPGP T ++ ++ + + + RV +K+ Sbjct: 65 YIDESQLTQEQLDQVHATWPGPYTWIMP--ASDKVSHWVSGQFDSIAVRVTDHPLVQKMC 122 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 +G PL SAN +GQ + + + + I+ G S S I + + + Sbjct: 123 NAFGKPLTSTSANLTGQPPCMTTEEV-EEQLGDRLVAILRGETSGRNKPSEIRDAKTSQI 181 Query: 189 VR 190 +R Sbjct: 182 LR 183 >gi|120555438|ref|YP_959789.1| Sua5/YciO/YrdC/YwlC family protein [Marinobacter aquaeolei VT8] gi|120325287|gb|ABM19602.1| Sua5/YciO/YrdC/YwlC family protein [Marinobacter aquaeolei VT8] gi|302608188|emb|CBW44443.1| putative RNA binding protein with YrdC/RibB domain [Marinobacter hydrocarbonoclasticus] Length = 207 Score = 176 bits (446), Expect = 5e-42, Method: Composition-based stats. Identities = 50/197 (25%), Positives = 82/197 (41%), Gaps = 5/197 (2%) Query: 1 MQIMSITDS-NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 QI T +++A E L G I PT++ Y L + A R+ I++ + Sbjct: 5 FQIHPETPQKRLIKQAVEILRKGGVIVYPTDSGYALGCHLGDKQAADRIKRIRRLDDKHN 64 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 D+S + +A VD L K F PGP T +LD S L ++ RV Sbjct: 65 FTLVCRDLSDIGVYAKVDNTQYRLLKNFTPGPYTFILDATSEVP-RRLLHPKRRSIGIRV 123 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P ++L+ G P+ + G+ + + ++ E+ LIIDGG + + Sbjct: 124 PDNEIVRELLGELGEPIMSSTLILPGETEPLTDPYDIRETLGHELDLIIDGGFCGM-EAT 182 Query: 179 TIVNVQCEKKVRILRPG 195 T+VN + + R G Sbjct: 183 TVVNFTGDVP-EVTRVG 198 >gi|157150566|ref|YP_001450439.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus gordonii str. Challis substr. CH1] gi|157075360|gb|ABV10043.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus gordonii str. Challis substr. CH1] Length = 206 Score = 176 bits (446), Expect = 5e-42, Method: Composition-based stats. Identities = 64/193 (33%), Positives = 101/193 (52%), Gaps = 8/193 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + K L AG + +PTETVYGL + N A+ R+YE+K+RP L +V+ + + Sbjct: 11 MDKIENILAAGGAVVLPTETVYGLFAQALNEEAVERVYELKRRPRDKALNLNVASLEEIY 70 Query: 72 KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129 + P L L + F PGPLT++L + + + + T FR+P T LI Sbjct: 71 AFSKNQPTYLDQLYQAFLPGPLTIILQ--ANDQVPTWINSGMDTVGFRIPKHPVTLDLIR 128 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 YG PL PSAN SG++S T+ + I+ +++ + D + G +STI+++ EK Sbjct: 129 KYG-PLIGPSANLSGKVSGTSFQQIVMD-FQEQVSGVEDDA-ALTGQDSTILDLSGEK-A 184 Query: 190 RILRPGGLEIETL 202 ILR G + E + Sbjct: 185 HILRQGAIAREDI 197 >gi|158521899|ref|YP_001529769.1| Sua5/YciO/YrdC/YwlC family protein [Desulfococcus oleovorans Hxd3] gi|158510725|gb|ABW67692.1| Sua5/YciO/YrdC/YwlC family protein [Desulfococcus oleovorans Hxd3] Length = 202 Score = 176 bits (446), Expect = 6e-42, Method: Composition-based stats. Identities = 42/196 (21%), Positives = 85/196 (43%), Gaps = 6/196 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + K + L G +A PT+T Y + D ++ ++Y+IK+R P D+ Sbjct: 12 ERLIAKVVDSLRQGGIVAFPTDTFYAIGCDIMQKKSVEKIYQIKQRHKSKPFSFICCDLK 71 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + ++A V + K PGP T +L+ + + + KTA RVP + Sbjct: 72 DISEYAKVTDYAYRTMKRLLPGPYTFILE--GSRPLPKTMVSKRKTAGIRVPDNAICMAI 129 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G+P+ +A + T ++ K + +++DGG S+I++ ++ Sbjct: 130 VRALGNPVISTTAKLPDKGVFT-DPELIHDHFGKLLDIVVDGGPVPC-QPSSILSF-VDE 186 Query: 188 KVRILRPGGLEIETLK 203 + I+R G ++ + Sbjct: 187 EPEIIRRGLGPLDIFE 202 >gi|83719037|ref|YP_442432.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia thailandensis E264] gi|167619438|ref|ZP_02388069.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia thailandensis Bt4] gi|257138635|ref|ZP_05586897.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia thailandensis E264] gi|83652862|gb|ABC36925.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia thailandensis E264] Length = 209 Score = 176 bits (446), Expect = 6e-42, Method: Composition-based stats. Identities = 51/193 (26%), Positives = 85/193 (44%), Gaps = 4/193 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E + G IA+PT++ Y LA + A+ R+ I+ L V D+S Sbjct: 14 PRLIKQAAEIVRGGGVIALPTDSSYALACHLDDKDAVERVRRIRGLDEKQHLSLLVRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + A VD L K PGP +L LS + KT RVP T L Sbjct: 74 ELATFAMVDNRQYRLIKSVTPGPYVFILQATKEVP-RRLSHPSRKTIGLRVPAHAITLAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E+ G PL + N + + + K++ L+IDGG ST++++ ++ Sbjct: 133 LESLGQPLLGTTLILPPDDEPLNDPEEIRARLEKQVDLVIDGGACPR-EPSTVIDLTGDE 191 Query: 188 KVRILRPGGLEIE 200 +++R G +E Sbjct: 192 P-QLVRAGRGPLE 203 >gi|262282283|ref|ZP_06060051.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus sp. 2_1_36FAA] gi|262261574|gb|EEY80272.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus sp. 2_1_36FAA] Length = 196 Score = 176 bits (446), Expect = 6e-42, Method: Composition-based stats. Identities = 64/193 (33%), Positives = 102/193 (52%), Gaps = 8/193 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + K + L AG + +PTETVYGL + N A+ R+YE+K+RP L +V+ + + Sbjct: 1 MDKIEKTLAAGGAVVLPTETVYGLFAQALNEEAVERVYELKRRPRDKALNLNVASLEEIY 60 Query: 72 KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129 + P L L + F PGPLT++L + + + + T FR+P T LI Sbjct: 61 AFSKNHPTYLDQLYQAFLPGPLTIILQ--ANDQVPTWINSGMDTVGFRIPKHPVTLDLIR 118 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 YG PL PSAN SG++S T+ + I+ +++ + D + G +STI+++ EK Sbjct: 119 KYG-PLIGPSANLSGKVSGTSFQQIVMD-FQEQVSGVEDDA-ALTGQDSTILDLSGEK-A 174 Query: 190 RILRPGGLEIETL 202 ILR G + E + Sbjct: 175 HILRQGAITREDI 187 >gi|205352606|ref|YP_002226407.1| hypothetical protein SG1394 [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205272387|emb|CAR37267.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326627670|gb|EGE34013.1| hypothetical protein SG9_1422 [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 206 Score = 176 bits (446), Expect = 6e-42, Method: Composition-based stats. Identities = 44/188 (23%), Positives = 77/188 (40%), Gaps = 4/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A + + G I PT++ Y L + A+ R+ I+ P + D+S Sbjct: 14 QRLINQAVDIVRKGGVIVYPTDSGYALGCKIEDKGAMERICRIRHLPDGHNFTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + ++ VD ++ L K PG T +L L KT RVP L Sbjct: 74 GLSTYSYVDNVAFRLMKNNTPGNYTFILKGTKEVP-RRLLQEKRKTIGLRVPSNPIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++T G P+ S G + + + K++ LII GG +T++++ + Sbjct: 133 LDTLGEPMLSTSLMLPGSDFTESDPEEIKDRLEKQVDLIIHGGYLGQ-QPTTVIDLTNDS 191 Query: 188 KVRILRPG 195 V +LR G Sbjct: 192 PV-VLREG 198 >gi|146282789|ref|YP_001172942.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas stutzeri A1501] gi|145570994|gb|ABP80100.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas stutzeri A1501] gi|327481127|gb|AEA84437.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas stutzeri DSM 4166] Length = 207 Score = 176 bits (446), Expect = 6e-42, Method: Composition-based stats. Identities = 45/193 (23%), Positives = 83/193 (43%), Gaps = 4/193 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E + G + PT++ Y + N I R+ +++ + D+S Sbjct: 14 PRLIKQAVEIIRKGGVVVYPTDSSYAIGCSMGNKAGIERIRRLRQLDDKHNFTLACRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 + A VD + L K PGP T++L L +T RVP + L Sbjct: 74 QLGLFAKVDTAAFRLLKAHLPGPYTIILTATREVP-RMLLHPKRRTIGLRVPALPIAQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL S G+ + + + ++ ++ LIIDGG + ST+V++ ++ Sbjct: 133 LEELGEPLMSVSLILPGEDLPMSDPYEMRDALEHQVDLIIDGGYGGL-EASTVVSLVDDQ 191 Query: 188 KVRILRPGGLEIE 200 ++R G + E Sbjct: 192 P-EVVRVGCGDPE 203 >gi|306829486|ref|ZP_07462676.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus mitis ATCC 6249] gi|304428572|gb|EFM31662.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus mitis ATCC 6249] Length = 200 Score = 176 bits (446), Expect = 6e-42, Method: Composition-based stats. Identities = 61/193 (31%), Positives = 101/193 (52%), Gaps = 8/193 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + L+ G + +PTETVYGL ++ + A+ +Y++K+RP L +V+ + + Sbjct: 2 MDRIRQELEKGGAVVLPTETVYGLFANALDEKAVDHVYQLKRRPRDKALNLNVASLEDIL 61 Query: 72 KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P L L + F PGPLT++L+ + + + L T FR+P T LI Sbjct: 62 HFSKNQPTYLQKLVEAFLPGPLTIILE--ANDRVPYWVNSGLATVGFRMPSHPITLDLIR 119 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL PSAN SGQ S IL + + L D ++ G +STI+++ +K V Sbjct: 120 ETG-PLIGPSANISGQASGVTFAQILKDFDQEVLGLEDDAFLT--GQDSTILDLSGDK-V 175 Query: 190 RILRPGGLEIETL 202 +ILR G ++ E + Sbjct: 176 KILRQGAIKREDI 188 >gi|288869983|ref|ZP_06112469.2| Sua5/YciO/YrdC/YwlC family protein [Clostridium hathewayi DSM 13479] gi|288868885|gb|EFD01184.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium hathewayi DSM 13479] Length = 162 Score = 176 bits (446), Expect = 6e-42, Method: Composition-based stats. Identities = 51/137 (37%), Positives = 72/137 (52%), Gaps = 4/137 (2%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 D L KA L G +A PTETVYGL ++ + A +++Y K RP+ NPLI H++D Sbjct: 27 IDLKKLEKAAAILREGGLVAFPTETVYGLGANALDEEAAKKIYAAKGRPSDNPLIAHIAD 86 Query: 67 ISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFT 124 S +K A + + L + FWPGPLT++ + + +T L T R+P Sbjct: 87 FSDLKPLVAEIPETAKKLMEAFWPGPLTMIFP--KSDAVPYGTTGGLDTVAVRMPSDPVA 144 Query: 125 KKLIETYGHPLAIPSAN 141 LI G P+A PSAN Sbjct: 145 MTLIRLSGVPVAAPSAN 161 >gi|146311854|ref|YP_001176928.1| hypothetical protein Ent638_2202 [Enterobacter sp. 638] gi|145318730|gb|ABP60877.1| Sua5/YciO/YrdC/YwlC family protein [Enterobacter sp. 638] Length = 206 Score = 176 bits (446), Expect = 6e-42, Method: Composition-based stats. Identities = 46/188 (24%), Positives = 78/188 (41%), Gaps = 4/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A E + G I PT++ Y L + A+ R+ I+ P + D+S Sbjct: 14 ARLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKGAMERICRIRHLPDGHNFTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD ++ L K PG T +L L KT RVP + L Sbjct: 74 EISTYAYVDNVAFRLIKNNTPGNYTFILKGTKEVP-RRLLQEKRKTIGMRVPSNPIAQML 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +ET G P+ S G + + + K++ LII GG +T+V++ + Sbjct: 133 LETLGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGGYLGQ-QPTTVVDLTEDA 191 Query: 188 KVRILRPG 195 ++R G Sbjct: 192 P-EVIREG 198 >gi|198245890|ref|YP_002215421.1| hypothetical protein SeD_A1608 [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197940406|gb|ACH77739.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] Length = 206 Score = 176 bits (446), Expect = 6e-42, Method: Composition-based stats. Identities = 44/188 (23%), Positives = 77/188 (40%), Gaps = 4/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A + + G I PT++ Y L + A+ R+ I+ P + D+S Sbjct: 14 QRLINQAVDIVRKGGVIVYPTDSGYALGCKIEDKGAMERICRIRHLPDGHNFTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + ++ VD ++ L K PG T +L L KT RVP L Sbjct: 74 ELSTYSYVDNVAFRLMKNNTPGNYTFILKGTKEVP-RRLLQEKRKTIGLRVPSNPIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++T G P+ S G + + + K++ LII GG +T++++ + Sbjct: 133 LDTLGEPMLSTSLMLLGSDFTESDPEEIKDRLEKQVDLIIHGGYLGQ-QPTTVIDLTNDS 191 Query: 188 KVRILRPG 195 V +LR G Sbjct: 192 PV-VLREG 198 >gi|91226311|ref|ZP_01261151.1| Sua5/YciO/YrdC family protein [Vibrio alginolyticus 12G01] gi|269966992|ref|ZP_06181062.1| Sua5/YciO/YrdC family protein [Vibrio alginolyticus 40B] gi|91189322|gb|EAS75601.1| Sua5/YciO/YrdC family protein [Vibrio alginolyticus 12G01] gi|269828386|gb|EEZ82650.1| Sua5/YciO/YrdC family protein [Vibrio alginolyticus 40B] Length = 185 Score = 176 bits (446), Expect = 6e-42, Method: Composition-based stats. Identities = 44/185 (23%), Positives = 77/185 (41%), Gaps = 7/185 (3%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + + L G IA PTE V+G+ D NP AI++L E+K+RP LI + Sbjct: 2 DNFEQVLNALKQGEVIAYPTEGVFGVGCDPDNPEAIQKLLELKQRPVEKGLILIAASYDQ 61 Query: 70 VKKHASVDPLSLHLAK---LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + + L+ + WPGP T ++ ++ + + + RV + Sbjct: 62 LLPYIDESQLTEEQLQTVHATWPGPYTWIMP--ASDKVSNWVSGQFDSIAVRVTDHPLVQ 119 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 K+ +G PL SAN SG + + + ++ I+ G S S I + + Sbjct: 120 KMCNAFGKPLTSTSANLSGLPPCMTTEEV-EEQLGDKLVAILRGETSGRDKPSEIRDAKT 178 Query: 186 EKKVR 190 + +R Sbjct: 179 SQILR 183 >gi|332521840|ref|ZP_08398289.1| Sua5/YciO/YrdC/YwlC family protein [Lacinutrix algicola 5H-3-7-4] gi|332042512|gb|EGI78714.1| Sua5/YciO/YrdC/YwlC family protein [Lacinutrix algicola 5H-3-7-4] Length = 206 Score = 176 bits (446), Expect = 6e-42, Method: Composition-based stats. Identities = 51/207 (24%), Positives = 87/207 (42%), Gaps = 13/207 (6%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 Q + I + N ++K E L G + PT+TVYGL D N A+ R+ IK Sbjct: 3 QFIRIYEENPNPKEIKKVIEVLKNGGLVIYPTDTVYGLGCDINNTKALERIARIKGVKLE 62 Query: 58 NP-LICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115 L D+S + + +D + + K PGP T +L + P K Sbjct: 63 KANLSFICEDLSNLSDYVKQIDTATFKILKRALPGPYTFILPGSKSL---PSVFKKKKEV 119 Query: 116 CFRVP-CGFTKKLIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGGISK 173 R+P T ++++ G+PL S ++ T ++ + L+IDGG Sbjct: 120 GIRIPNNNITLEIVKALGNPLVSTSIRDEDEVLEYTTDPELILEKWDNLVDLVIDGGYGG 179 Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIE 200 STI+++ ++ ++R G +E Sbjct: 180 -NQGSTIIDLSNDEP-EVVREGKGSLE 204 >gi|78222805|ref|YP_384552.1| translation factor SUA5 [Geobacter metallireducens GS-15] gi|78194060|gb|ABB31827.1| translation factor SUA5 [Geobacter metallireducens GS-15] Length = 203 Score = 175 bits (445), Expect = 7e-42, Method: Composition-based stats. Identities = 54/188 (28%), Positives = 94/188 (50%), Gaps = 6/188 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + + L G IA PT+T YG+ + I R+Y +K+R P SD+S Sbjct: 12 PRLVAQVVKILKDGGIIAYPTDTTYGIGCSIFSKKGIERIYLLKQREKKKPFSFICSDLS 71 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 V ++A V + + K PGP T VLD +T+ + L KT R+P L Sbjct: 72 EVARYAKVSNYAYKMLKRHLPGPYTFVLD--ATSIVPDLLVTKQKTVGIRIPDNRICLSL 129 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ GHP+ SAN SG+ +++ ++ K++ +++DGGI + S++V++ + Sbjct: 130 VKELGHPIITTSANLSGEE-PIGDPYLVDLNMGKQLDVVVDGGILSADV-SSVVSLIGDY 187 Query: 188 KVRILRPG 195 ++LR G Sbjct: 188 P-QVLRQG 194 >gi|307729238|ref|YP_003906462.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. CCGE1003] gi|307583773|gb|ADN57171.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. CCGE1003] Length = 211 Score = 175 bits (445), Expect = 7e-42, Method: Composition-based stats. Identities = 49/189 (25%), Positives = 84/189 (44%), Gaps = 3/189 (1%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A + ++ G +A+PT++ Y LA + A+ RL I+ L V D+S Sbjct: 14 PRLVKQAVQIINDGGVVALPTDSSYALACHLDDKNAVERLRRIRGLDEKQLLSLLVRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + A VD L K PGP VL LS + KT RVP T + Sbjct: 74 ELANFAMVDNRQYRLIKSVTPGPYVFVLQATKEVP-RRLSHPSRKTIGLRVPDHAITLAI 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + G+ + N + + + K++ L+IDGG + ST++++ ++ Sbjct: 133 LGELGQPLLGSTLILPGETAPLNDPEEIRARLEKQLDLVIDGGAC-VCEPSTVIDLTGDE 191 Query: 188 KVRILRPGG 196 V + G Sbjct: 192 PVLVRAGRG 200 >gi|314927456|gb|EFS91287.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL044PA1] gi|328907542|gb|EGG27308.1| SUA5 related protein [Propionibacterium sp. P08] Length = 295 Score = 175 bits (445), Expect = 7e-42, Method: Composition-based stats. Identities = 60/210 (28%), Positives = 101/210 (48%), Gaps = 8/210 (3%) Query: 3 IMSITDSNA----LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58 I+ + D +A L +A + + G I +PT+TVYG+ D+ NP A++RL K+R Sbjct: 53 ILDVADPDACEEALVQAADAIADGECIVLPTDTVYGIGADALNPLAVQRLLNAKERGRDM 112 Query: 59 PLICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 P VSD + P + LA+ +WPG LTL+L + + T T Sbjct: 113 PPPVLVSDSVALPALCQHIPAGAKALAEKYWPGGLTLILRAQESLGMDLGETNG--TLAV 170 Query: 118 RVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 RVP + + P+A+ SAN+SG + + + + E+ + +D G S++G Sbjct: 171 RVPDQDQTRELLRMTGPMAVSSANKSGHPAALTAQEA-ADQLGVEVAVYLDAGPSRVGES 229 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAIS 207 STI++ +++R G L +E + S Sbjct: 230 STIIDFVSTADGKVVRQGALSLEAIHEVAS 259 >gi|295676914|ref|YP_003605438.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. CCGE1002] gi|295436757|gb|ADG15927.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. CCGE1002] Length = 211 Score = 175 bits (445), Expect = 7e-42, Method: Composition-based stats. Identities = 51/193 (26%), Positives = 88/193 (45%), Gaps = 4/193 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A + ++ G +A+PT++ Y LA + A+ RL I+ L V D+S Sbjct: 14 PRLVKQAAQIINDGGVVALPTDSTYALACRLDDKDAVERLRRIRGLDEKQLLSLLVRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + A VD L K PGP VL +S + KT RVP T + Sbjct: 74 ELANFAMVDNWQYRLLKSVTPGPYVFVLQATKEVP-RRVSHPSRKTIGLRVPDHAITLAI 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL + G+ N + + + K++ L+IDGG + ST++++ + Sbjct: 133 LEELGQPLLGTTLIMPGETEPLNDPEEIRARLEKQLDLVIDGGAC-VCEPSTVIDLTGSE 191 Query: 188 KVRILRPGGLEIE 200 V ++R G ++E Sbjct: 192 PV-LVRAGRGQLE 203 >gi|229592266|ref|YP_002874385.1| hypothetical protein PFLU4879 [Pseudomonas fluorescens SBW25] gi|229364132|emb|CAY51764.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25] Length = 209 Score = 175 bits (445), Expect = 7e-42, Method: Composition-based stats. Identities = 49/200 (24%), Positives = 83/200 (41%), Gaps = 8/200 (4%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 Q I N +++A E + AG + PT++ Y + + A+ R+ +++ Sbjct: 3 QFFQIHPENPQARLIKQAVEIIRAGGVVIYPTDSSYAIGCQIGDKGAVERVRRLRQLDDK 62 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 + SD+S + A VD + L K PGP T +L+ L +T Sbjct: 63 HNFALICSDLSQLGLFAKVDTGTFRLLKAHTPGPYTFILNATREVP-RLLLHPKKRTIGL 121 Query: 118 RVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 RVP L+ G PL S G + + + K++ LIIDGG G Sbjct: 122 RVPEHPIALALLAELGEPLMSVSLIMPGDTEPLEDPYEMRQLLEKQVDLIIDGGFGG-GK 180 Query: 177 ESTIVNVQCEKKVRILRPGG 196 ST++N+ + + ++R G Sbjct: 181 ASTVINL-ADGEPEVIRVGC 199 >gi|324992931|gb|EGC24851.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK405] gi|325687439|gb|EGD29460.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK72] gi|327462227|gb|EGF08554.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK1] gi|327489582|gb|EGF21374.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK1058] Length = 196 Score = 175 bits (445), Expect = 7e-42, Method: Composition-based stats. Identities = 65/193 (33%), Positives = 103/193 (53%), Gaps = 8/193 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + K + L AG + +PTETVYGL + N A+ R+YE+K+RP L +V+ + + Sbjct: 1 MDKIEKTLAAGGAVVLPTETVYGLFAQALNQEAVERVYELKRRPRDKALNLNVASLEEIY 60 Query: 72 KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129 + P L L + F PGPLT++L + + + ++T FR+P T LI Sbjct: 61 AFSKNPPSYLDQLYQAFLPGPLTIILQ--ANDQVPVWINSGMETVGFRIPKHPVTLDLIR 118 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 YG PL PSAN SG+ S T+ + I+ +++ + D + G +STI+++ EK Sbjct: 119 KYG-PLIGPSANLSGKASGTSFQQIMMD-FQEQVSGVEDD-PALTGQDSTILDLSGEK-A 174 Query: 190 RILRPGGLEIETL 202 RILR G + E + Sbjct: 175 RILRQGAITREDI 187 >gi|72162816|ref|YP_290473.1| translation factor SUA5 [Thermobifida fusca YX] gi|71916548|gb|AAZ56450.1| translation factor SUA5 [Thermobifida fusca YX] Length = 259 Score = 175 bits (445), Expect = 7e-42, Method: Composition-based stats. Identities = 51/214 (23%), Positives = 87/214 (40%), Gaps = 5/214 (2%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 + A + G + +PT+TVYG+ D+ NP A+ L K+R +P V + Sbjct: 16 GIADAASTVRRGELVVLPTDTVYGVGADAFNPAAVTALRNAKQRGREHPPAVLVGTVRAA 75 Query: 71 KKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129 + L + FWPGPLTLV +T + T R+P + Sbjct: 76 QALIDDLGKYGQDLIEEFWPGPLTLVC--AATPSLSWDLGDTKGTVAVRMPMHPVALELL 133 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+A+ AN +G+ + T V+ + + + +D G STIV++ Sbjct: 134 KEVGPMAVSGANVTGKPAATTVEEA-ETQFGDAVSVYLDAGPCTSTPPSTIVDLTYAVP- 191 Query: 190 RILRPGGLEIETLKRAISVELEYCVDETSTPQSP 223 R+LR G + +E L+ + P++ Sbjct: 192 RVLRSGAITLEQLRSVCGTVIAELKRPEREPKTS 225 >gi|313837663|gb|EFS75377.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL037PA2] gi|314972603|gb|EFT16700.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL037PA3] Length = 295 Score = 175 bits (445), Expect = 7e-42, Method: Composition-based stats. Identities = 60/210 (28%), Positives = 101/210 (48%), Gaps = 8/210 (3%) Query: 3 IMSITDSNA----LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58 I+ + D +A L +A + + G I +PT+TVYG+ D+ NP A++RL K+R Sbjct: 53 ILDVADPDACEEALVQAADAIADGECIVLPTDTVYGIGADALNPLAVQRLLNAKERGRDM 112 Query: 59 PLICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 P VSD + P + LA+ +WPG LTL+L + + T T Sbjct: 113 PPPVLVSDSVALPALCQHIPAGAKALAEKYWPGGLTLILRAQESLGMDLGETNG--TLAV 170 Query: 118 RVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 RVP + + P+A+ SAN+SG + + + + E+ + +D G S++G Sbjct: 171 RVPDQDQTRELLRMTGPMAVSSANKSGHPAALTAQEA-ADQLGVEVAVYLDAGPSRVGES 229 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAIS 207 STI++ +++R G L +E + S Sbjct: 230 STIIDFVSTADGKVVRQGALSLEAIHEVAS 259 >gi|108706710|gb|ABF94505.1| yrdC protein, putative, expressed [Oryza sativa Japonica Group] gi|125585293|gb|EAZ25957.1| hypothetical protein OsJ_09812 [Oryza sativa Japonica Group] gi|215695443|dbj|BAG90626.1| unnamed protein product [Oryza sativa Japonica Group] Length = 274 Score = 175 bits (445), Expect = 7e-42, Method: Composition-based stats. Identities = 67/201 (33%), Positives = 101/201 (50%), Gaps = 5/201 (2%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 I+ T+ + ++ A + ++ G IA+PT+T+YG A D+ + A+ R+YEIK R PL Sbjct: 64 ILPATNDHVMK-AIDSINRGQVIAVPTDTIYGFACDACSAEAVNRIYEIKGRVQTRPLAI 122 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC- 121 V+D+ + + A VD L L PGP+T+VL + + + L++ RVP Sbjct: 123 CVADVPDISRFAVVDHLPHGLLDSLLPGPVTVVLKRGNNSILERSLNPGLESIGVRVPDF 182 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STI 180 F + + G LA+ SAN SG S NVK + + DGGI G STI Sbjct: 183 DFIRAISRGAGSALALTSANLSGHPSSVNVKD--FEDLWPHCSYVFDGGILPSGRAGSTI 240 Query: 181 VNVQCEKKVRILRPGGLEIET 201 V++ +ILR G ET Sbjct: 241 VDLITPGVYKILRDGSSRQET 261 >gi|257061454|ref|YP_003139342.1| Sua5/YciO/YrdC/YwlC family protein [Cyanothece sp. PCC 8802] gi|256591620|gb|ACV02507.1| Sua5/YciO/YrdC/YwlC family protein [Cyanothece sp. PCC 8802] Length = 217 Score = 175 bits (445), Expect = 7e-42, Method: Composition-based stats. Identities = 50/207 (24%), Positives = 96/207 (46%), Gaps = 10/207 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 ++ + L G + PT+TVY + D N A++R+ ++K+ PL S +S Sbjct: 15 RSIEEITTELQKGAVMLYPTDTVYAIGCDLNNKAAVQRVRQLKQLSNDKPLTFLCSSLSN 74 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKKL 127 + +A V + + K PGP T +L +T + L + KT RVP + + Sbjct: 75 IADYALVSDEAYRIMKRVIPGPYTFLLP--ATKLVPKLVMSPKRKTTGIRVPNHSICQMI 132 Query: 128 IETYGHPLAIPSANRSGQ----ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 ++ G+P+ SA+ + ++ K L + ++ LIID G+ STI+++ Sbjct: 133 LQNLGNPIVSSSAHLPDEEGEFPTLELEKAKLFDRLDHQVDLIIDNGLEPGFEVSTILDM 192 Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL 210 E+ I + GL + L+ +++ + Sbjct: 193 TSEEPAVIRQ--GLGWDELQNWLNITV 217 >gi|311694079|gb|ADP96952.1| Sua5/YciO/YrdC/YwlC family protein [marine bacterium HP15] Length = 207 Score = 175 bits (445), Expect = 7e-42, Method: Composition-based stats. Identities = 48/198 (24%), Positives = 80/198 (40%), Gaps = 4/198 (2%) Query: 1 MQIMSITDS-NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 QI T + +A + L G I PT++ Y + + A R+ I++ + Sbjct: 5 FQIHPETPQKRLINQAVDILRRGGVIVYPTDSAYAIGCHLGDKQAADRIKRIRRLDDKHN 64 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 D+S + +A VD L K F PGP T +LD S L ++ RV Sbjct: 65 FTLVCRDLSDIGVYAKVDNTQYRLLKNFTPGPYTFILDATSEVP-RRLLHPKRRSVGVRV 123 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P ++L+ G P+ + G+ + + ++ E+ LIIDGG + + Sbjct: 124 PDNAIVQELLGELGEPIMSSTLILPGETDPMTDPYEIRETLEHELDLIIDGGFCGM-EAT 182 Query: 179 TIVNVQCEKKVRILRPGG 196 T+V+ E V G Sbjct: 183 TVVDFTGEAPVVTRVGKG 200 >gi|186476189|ref|YP_001857659.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia phymatum STM815] gi|184192648|gb|ACC70613.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia phymatum STM815] Length = 230 Score = 175 bits (445), Expect = 8e-42, Method: Composition-based stats. Identities = 53/188 (28%), Positives = 86/188 (45%), Gaps = 4/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A + +++G +A+PT++ Y LA N A+ R+ I+ L V D+S Sbjct: 33 PRLIKQAAQIIESGGVVALPTDSSYALACQLDNRNAVDRVRRIRGIDERQLLSLLVRDLS 92 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + A VD L K PGP VL LS + KT RVP T + Sbjct: 93 ELANFALVDNRQYRLIKSVTPGPYVFVLQATKEVP-RRLSHPSRKTIGLRVPDHAITLAI 151 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL + G+ N + + K++ L+IDGG ST++++ E+ Sbjct: 152 LEELGQPLLGSTLILPGETQPLNDPAEIRERLEKQLDLVIDGGACPC-EPSTVIDLTGEE 210 Query: 188 KVRILRPG 195 V ++RPG Sbjct: 211 PV-LVRPG 217 >gi|315426641|dbj|BAJ48267.1| translation factor [Candidatus Caldiarchaeum subterraneum] Length = 194 Score = 175 bits (445), Expect = 8e-42, Method: Composition-based stats. Identities = 62/196 (31%), Positives = 94/196 (47%), Gaps = 6/196 (3%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A E + G I PT+TVYG+ D A+ R+ K+R P VSD + + A Sbjct: 4 AAEAVKRGGVIVYPTDTVYGIGCDPFKIEAVERVIHAKRR-EKKPAPVLVSDFDQLHEVA 62 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI-ETYGH 133 L A WPG +T+V+ ++ L TA KT R+P LI + Sbjct: 63 VPTEEELEAAIRLWPGAVTIVM--AKKPELPELVTAGEKTVGVRMPAHVVPLLIMQKAHR 120 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 PL SAN S + S T + I SS + K + +++D G + L ST+V +Q + +V +LR Sbjct: 121 PLVGTSANISDEPSATTIDQIPSSVLEK-VDVVVDAGRTHHLLPSTVVKIQ-DGQVVVLR 178 Query: 194 PGGLEIETLKRAISVE 209 G L E +++ I + Sbjct: 179 EGVLSREEIEKRIGLR 194 >gi|119775262|ref|YP_928002.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella amazonensis SB2B] gi|119767762|gb|ABM00333.1| translation factor SUA5 [Shewanella amazonensis SB2B] Length = 206 Score = 175 bits (445), Expect = 8e-42, Method: Composition-based stats. Identities = 45/192 (23%), Positives = 76/192 (39%), Gaps = 4/192 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A L +G I PT++ Y L + A+ R+ I++ + D+S Sbjct: 14 KRLIDQAVNILRSGGVIVYPTDSGYALGCLIGDKNAMERIVRIRQMEQDHHFSLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A V+ + L K PGP T + L KT RVP L Sbjct: 74 EIATYARVENQAFRLVKHCTPGPYTFIFKATKEVP-RRLQNDKKKTIGIRVPDNVIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL S GQ + + + ++ I++GG +T+V++ E Sbjct: 133 LEALGEPLMSTSLVMPGQEFAESDPEHIRDLLEHQVEAILNGGYLGES-PTTVVDM-SED 190 Query: 188 KVRILRPGGLEI 199 +LR G +I Sbjct: 191 TFEVLREGAGDI 202 >gi|227080291|ref|YP_002808842.1| Sua5/YciO/YrdC family protein [Vibrio cholerae M66-2] gi|298501236|ref|ZP_07011035.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio cholerae MAK 757] gi|227008179|gb|ACP04391.1| Sua5/YciO/YrdC family protein [Vibrio cholerae M66-2] gi|297540108|gb|EFH76170.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio cholerae MAK 757] Length = 188 Score = 175 bits (445), Expect = 8e-42, Method: Composition-based stats. Identities = 53/190 (27%), Positives = 87/190 (45%), Gaps = 10/190 (5%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 L++A + L G IA PTE V+GL D N TA++RL IK+RP +I + + Sbjct: 5 ENLQQAVDALRKGCVIAYPTEGVFGLGCDPDNQTAMQRLLAIKQRPVEKGVILIAASYAQ 64 Query: 70 VKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 ++ + L+ WP PLT V+ ++ D T RV + Sbjct: 65 LRPYVDETQLTADQLAQVLASWPAPLTWVMP--ASGDTPSWVRGQFDTVAVRVSDHPVVQ 122 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 KL +G PL SAN SGQ + + ++ + +I ++++G S S I + + Sbjct: 123 KLCLAFGKPLTSTSANLSGQPACVTQQEVMV-QLGNQIAVVVEGKTSGRCGPSEIRDARS 181 Query: 186 EKKVRILRPG 195 +++LR G Sbjct: 182 ---LQVLRQG 188 >gi|218247212|ref|YP_002372583.1| Sua5/YciO/YrdC/YwlC family protein [Cyanothece sp. PCC 8801] gi|218167690|gb|ACK66427.1| Sua5/YciO/YrdC/YwlC family protein [Cyanothece sp. PCC 8801] Length = 217 Score = 175 bits (445), Expect = 8e-42, Method: Composition-based stats. Identities = 50/207 (24%), Positives = 96/207 (46%), Gaps = 10/207 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 ++ + L G + PT+TVY + D N A++R+ ++K+ PL S +S Sbjct: 15 RSIEEITTELQKGAVMLYPTDTVYAIGCDLNNKAAVQRVRQLKQLSNDKPLTFLCSSLSN 74 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKKL 127 + +A V + + K PGP T +L +T + L + KT RVP + + Sbjct: 75 IADYALVSDEAYRIMKRVIPGPYTFLLP--ATKLVPKLVMSPKRKTTGIRVPNHSICQMI 132 Query: 128 IETYGHPLAIPSANRSGQ----ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 ++ G+P+ SA+ + ++ K L + ++ LIID G+ STI+++ Sbjct: 133 LQNLGNPIVSSSAHLPDEDGEFPTLELEKAKLFDRLDHQVDLIIDNGLEPGFEVSTILDM 192 Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL 210 E+ I + GL + L+ +++ + Sbjct: 193 TSEEPAVIRQ--GLGWDELQNWLNITV 217 >gi|153834324|ref|ZP_01986991.1| protein YrdC [Vibrio harveyi HY01] gi|148869332|gb|EDL68346.1| protein YrdC [Vibrio harveyi HY01] Length = 185 Score = 175 bits (445), Expect = 8e-42, Method: Composition-based stats. Identities = 44/185 (23%), Positives = 76/185 (41%), Gaps = 7/185 (3%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + + L G IA PTE V+G+ D NP AI++L E+K+RP LI + Sbjct: 2 ENFEQVLKALQTGEVIAYPTEGVFGVGCDPDNPEAIQKLLELKQRPVEKGLILIAASYEQ 61 Query: 70 VKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + + L+ WPGP T ++ ++ + + + RV + Sbjct: 62 LLPYIDESQLTQEQLDKVHATWPGPYTWIMP--ASDKVSHWVSGQFDSIAVRVTDHPLVQ 119 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 K+ +G PL SAN +GQ + + + + I+ G S S I + + Sbjct: 120 KMCNAFGKPLTSTSANLTGQPPCMTTEEV-EEQLGDRLVAILRGETSGRDKPSEIRDAKT 178 Query: 186 EKKVR 190 + +R Sbjct: 179 SQILR 183 >gi|293399949|ref|ZP_06644095.1| Sua5/YciO/YrdC/YwlC family protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306349|gb|EFE47592.1| Sua5/YciO/YrdC/YwlC family protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 203 Score = 175 bits (445), Expect = 8e-42, Method: Composition-based stats. Identities = 56/207 (27%), Positives = 96/207 (46%), Gaps = 7/207 (3%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ + ++ + + L G +A PT+TVYGLAV N A+ L + K RP P+ Sbjct: 1 METVR-YEAKDIETIADLLKEGKVVAFPTDTVYGLAVIYENEAALEALKKSKGRPENKPI 59 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 VS+ +++ A + + LA+ F PG T++L + T T R+P Sbjct: 60 PTMVSNFRQMEEIAYMSEDARKLAEEFMPGGFTMIL--KKKEHLPAYLTNGFDTVGIRMP 117 Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 LI+ PL + SAN SG+ + +L + I I+ G S ST Sbjct: 118 DDDIILHLIDLCEKPLLVTSANLSGEEPQETAEGVLK-QLDGRIDAIVVGE-SGGSKAST 175 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAI 206 IV++ ++ +RI+R G + + ++ + Sbjct: 176 IVDMSTDE-LRIVREGPISEKRIREVL 201 >gi|260773018|ref|ZP_05881934.1| YrdC family protein [Vibrio metschnikovii CIP 69.14] gi|260612157|gb|EEX37360.1| YrdC family protein [Vibrio metschnikovii CIP 69.14] Length = 206 Score = 175 bits (445), Expect = 8e-42, Method: Composition-based stats. Identities = 41/189 (21%), Positives = 76/189 (40%), Gaps = 4/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A + G + PT++ Y L N A+ R+ +I++ + D+S Sbjct: 14 ARLINQAVAIIRNGGVVVYPTDSGYALGCQLENKQALERICQIRRLDDKHNFTLLCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD + L K PGP T + L KT RVP L Sbjct: 74 ELSLYARVDNTAFRLLKNNTPGPYTFIFKGTKEVP-RRLMNVKRKTIGIRVPDNKIALDL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL S G+ + + + + + +I++GG +T+++ ++ Sbjct: 133 LEALGEPLMSTSLILPGKETTESDPEEIRDRLEHLVDVILNGGYLGE-QPTTVIDFSEDE 191 Query: 188 KVRILRPGG 196 V + R G Sbjct: 192 MV-VARLGA 199 >gi|332879949|ref|ZP_08447634.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332682160|gb|EGJ55072.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 208 Score = 175 bits (444), Expect = 9e-42, Method: Composition-based stats. Identities = 47/201 (23%), Positives = 83/201 (41%), Gaps = 9/201 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP-LICHVSD 66 + + K E L G I PT+TVYGL D N A+ ++ IK SD Sbjct: 13 NEKEIAKIVEVLRNGGLIIYPTDTVYGLGCDITNTKALEKIARIKGVKLEKANFSFVCSD 72 Query: 67 ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 + + + +D + L K PG T ++ + P KT RVP Sbjct: 73 LKNLSDYVKQIDSSTFKLLKRALPGAYTFIMQGNNNL---PKDFKKKKTVGIRVPDNLIA 129 Query: 125 KKLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + ++E G+P+ S I T ++ + ++IDGG ST++++ Sbjct: 130 RTIVERLGNPIVSTSIYDEDDVIEYTTDPELIFEKWQNLVDIVIDGGYGD-NTASTVIDL 188 Query: 184 QCEKKVRILRPGGLEIETLKR 204 ++ V ++R G +++ + R Sbjct: 189 SGDEPV-VIREGKGDVDIISR 208 >gi|312962721|ref|ZP_07777210.1| SUA5/YciO/YrdC/YwlC family protein [Pseudomonas fluorescens WH6] gi|311283096|gb|EFQ61688.1| SUA5/YciO/YrdC/YwlC family protein [Pseudomonas fluorescens WH6] Length = 222 Score = 175 bits (444), Expect = 9e-42, Method: Composition-based stats. Identities = 49/200 (24%), Positives = 83/200 (41%), Gaps = 8/200 (4%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 Q I N +++A E + AG + PT++ Y + + A+ R+ +++ Sbjct: 16 QFFQIHPENPQARLIKQAVEIIRAGGVVIYPTDSSYAIGCQIGDKGAVERVRRLRQLDDK 75 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 + SD+S + A VD + L K PGP T +L+ L +T Sbjct: 76 HNFALICSDLSQLGLFAKVDTGTFRLLKAHTPGPYTFILNATREVP-RLLLHPKKRTIGL 134 Query: 118 RVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 RVP L+ G PL S G + + + K++ LIIDGG G Sbjct: 135 RVPEHPIALALLAELGEPLMSVSLIMPGDTEPLEDPYEMRQLLEKQVDLIIDGGFGG-GK 193 Query: 177 ESTIVNVQCEKKVRILRPGG 196 ST++N+ + + ++R G Sbjct: 194 ASTVINL-ADGEPEVVRVGC 212 >gi|28898727|ref|NP_798332.1| putative translation factor [Vibrio parahaemolyticus RIMD 2210633] gi|153839753|ref|ZP_01992420.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio parahaemolyticus AQ3810] gi|260363729|ref|ZP_05776505.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio parahaemolyticus K5030] gi|260877277|ref|ZP_05889632.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio parahaemolyticus AN-5034] gi|260897776|ref|ZP_05906272.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio parahaemolyticus Peru-466] gi|260903496|ref|ZP_05911891.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio parahaemolyticus AQ4037] gi|28806945|dbj|BAC60216.1| putative translation factor [Vibrio parahaemolyticus RIMD 2210633] gi|149746720|gb|EDM57708.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio parahaemolyticus AQ3810] gi|308087594|gb|EFO37289.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio parahaemolyticus Peru-466] gi|308090289|gb|EFO39984.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio parahaemolyticus AN-5034] gi|308106751|gb|EFO44291.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio parahaemolyticus AQ4037] gi|308114914|gb|EFO52454.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio parahaemolyticus K5030] gi|328474709|gb|EGF45514.1| putative translation factor [Vibrio parahaemolyticus 10329] Length = 206 Score = 175 bits (444), Expect = 9e-42, Method: Composition-based stats. Identities = 42/196 (21%), Positives = 77/196 (39%), Gaps = 4/196 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A + G + PT++ Y L N A+ R+ +I++ + D+S Sbjct: 14 ARLINQAVAIIRNGGVVVYPTDSGYALGCQLENKQALERICQIRRLDDKHNFTLLCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD + L K PGP T + L A KT RVP L Sbjct: 74 EISLYARVDNGAFRLLKNNTPGPYTFIFKGTKEVP-RRLMNAKRKTIGIRVPNNQIALDL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL S G + + + + +I++GG +T+++ E Sbjct: 133 LEALGEPLMSTSLILPGSDVTESDPEDIRDKLEHAVDVILNGGYLGE-QPTTVIDF-SEG 190 Query: 188 KVRILRPGGLEIETLK 203 + ++R G + + Sbjct: 191 EPEVVRIGSGDPSPFE 206 >gi|315178580|gb|ADT85494.1| translation factor [Vibrio furnissii NCTC 11218] Length = 185 Score = 175 bits (444), Expect = 9e-42, Method: Composition-based stats. Identities = 49/190 (25%), Positives = 80/190 (42%), Gaps = 10/190 (5%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 N + L +G IA PTE V+G+ D NP AI +L ++K+RP LI + Sbjct: 2 NNFEHTLQALQSGEVIAYPTEGVFGVGCDPDNPQAIEKLLQLKQRPVEKGLILIAASYQQ 61 Query: 70 VKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + + L+ + WPGP+T ++ ++ + + T RV + Sbjct: 62 LLPYIDESQLTQEQLERVQSTWPGPVTWIMP--ASERVSHWVSGQFDTIAVRVTDHPLVQ 119 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 KL YG PL SAN SG + + + ++ I+ G S I + Sbjct: 120 KLCLAYGKPLTSTSANLSGLPPCMTTQEV-EQQLGDQLVAILQGETGGRNKPSEIRDA-- 176 Query: 186 EKKVRILRPG 195 K +++LR G Sbjct: 177 -KTLQVLRQG 185 >gi|108757718|ref|YP_632028.1| Sua5/YciO/YrdC/YwlC family protein [Myxococcus xanthus DK 1622] gi|108461598|gb|ABF86783.1| Sua5/YciO/YrdC/YwlC family protein [Myxococcus xanthus DK 1622] Length = 203 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 55/194 (28%), Positives = 94/194 (48%), Gaps = 6/194 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E L+ G +A PT+T +GL D + I RLY++K R PL D+S Sbjct: 15 PRHIQRAVEVLERGGLLAYPTDTYFGLGCDLSSKKGIERLYQLKGRDKKKPLSFLCPDLS 74 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 V ++A V + K PG T +L+ +T + L + K RVP ++L Sbjct: 75 DVARYAHVSNFAYRTMKSLTPGAFTFILE--ATRLVPDLMMSKQKQVGIRVPDSALVREL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 G PL SA + +T+ K + + + + LI+DGG++ + ST++++ + Sbjct: 133 TRALGRPLVTTSATNTEGEPLTDAKD-IKADLGHGLDLILDGGVT-LNEPSTVISLIGD- 189 Query: 188 KVRILRPGGLEIET 201 + ILR G +E Sbjct: 190 SLEILRQGKGRLED 203 >gi|125542795|gb|EAY88934.1| hypothetical protein OsI_10418 [Oryza sativa Indica Group] Length = 274 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 67/201 (33%), Positives = 102/201 (50%), Gaps = 5/201 (2%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 I+ T+ + ++ A + ++ G IA+PT+T+YG A D+ + A+ R+YEIK R PL Sbjct: 64 ILPATNDHVMK-AIDSINRGQVIAVPTDTIYGFACDACSAEAVNRIYEIKGRVQTRPLAI 122 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC- 121 V+D+ + + A VD L L PGP+T+VL + + + L++ RVP Sbjct: 123 CVADVPDISRFAVVDHLPHGLLDSLLPGPVTVVLKRGNNSILERSLNPGLESIGVRVPDF 182 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STI 180 F + + G LA+ SAN SG+ S NVK + + DGGI G STI Sbjct: 183 DFIRAISRGAGSALALTSANLSGRPSSVNVKD--FEDLWPHCSYVFDGGILPSGRAGSTI 240 Query: 181 VNVQCEKKVRILRPGGLEIET 201 V++ +ILR G ET Sbjct: 241 VDLITPGVYKILRDGSSRQET 261 >gi|331007378|ref|ZP_08330567.1| hypothetical protein IMCC1989_1396 [gamma proteobacterium IMCC1989] gi|330418812|gb|EGG93289.1| hypothetical protein IMCC1989_1396 [gamma proteobacterium IMCC1989] Length = 203 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 49/204 (24%), Positives = 89/204 (43%), Gaps = 8/204 (3%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 Q+ SI N + +A E + G +A PT++ Y L + A+ R+ I++ Sbjct: 3 QLFSIHPENPQARFITRAVEIIRKGGLVAYPTDSAYALGCHIGDKFALDRIRGIRQLDKH 62 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 + D+S + +A V+ + + K F PGP T +L+ S T L KT Sbjct: 63 HNFTLVCRDLSEIATYAKVNNQAYRMIKNFTPGPFTFILEATSETP-RRLKHPKRKTIGL 121 Query: 118 RVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 RVP L+E P+ + + + + ++ ++ L+IDGG + Sbjct: 122 RVPSNPVALALLEELNEPMMTSTLILPNESQPLTDPYDIRETLEHQLELVIDGGFCGM-E 180 Query: 177 ESTIVNVQCEKKVRILRPGGLEIE 200 +T+V++ ++ V I+R G E Sbjct: 181 ATTVVDMTGDEPV-IVRQGCGVFE 203 >gi|324991174|gb|EGC23108.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK353] Length = 196 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 68/193 (35%), Positives = 103/193 (53%), Gaps = 8/193 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + K + L AG + +PTETVYGL + N A+ R+YE+K+RP L +V+ I + Sbjct: 1 MDKIEKTLVAGGAVVLPTETVYGLFAQALNEEAVERVYELKRRPRDKALNLNVASIEEIY 60 Query: 72 KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129 + P L L + F PGPLT++L + + + ++T FR+P T LI Sbjct: 61 AFSKNQPSYLKQLYQAFLPGPLTIILQ--ANDRVPTWINSGMETVGFRIPKHPVTLDLIR 118 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 YG PL PSAN SG+ S T+ + I+ +EI + D S G +STI+++ EK + Sbjct: 119 KYG-PLIGPSANLSGKASGTSFQQIMMD-FQEEISGVEDDA-SLTGQDSTILDLSGEKAL 175 Query: 190 RILRPGGLEIETL 202 ILR G + E + Sbjct: 176 -ILRQGAITREDI 187 >gi|261340037|ref|ZP_05967895.1| Sua5/YciO/YrdC/YwlC family protein [Enterobacter cancerogenus ATCC 35316] gi|288317957|gb|EFC56895.1| Sua5/YciO/YrdC/YwlC family protein [Enterobacter cancerogenus ATCC 35316] Length = 206 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 45/188 (23%), Positives = 78/188 (41%), Gaps = 4/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A E + G I PT++ Y L + A+ R+ I++ P + D+S Sbjct: 14 ARLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKGAMERICRIRQLPDGHNFTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD ++ L K PG T +L L KT RVP + L Sbjct: 74 ELSTYAYVDNVAFRLIKNNTPGNYTFILKGTKEVP-RRLLQEKRKTIGMRVPSNPIAQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +ET G P+ S G + + + K + LII GG +T++++ + Sbjct: 133 LETLGEPMLSTSLMLPGSEFTESDPEEIKDRLEKVVELIIHGGYLGQ-QPTTVIDLTEDA 191 Query: 188 KVRILRPG 195 ++R G Sbjct: 192 P-EVIREG 198 >gi|317063168|ref|ZP_07927653.1| SUA5 protein [Fusobacterium ulcerans ATCC 49185] gi|313688844|gb|EFS25679.1| SUA5 protein [Fusobacterium ulcerans ATCC 49185] Length = 219 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 64/202 (31%), Positives = 104/202 (51%), Gaps = 11/202 (5%) Query: 1 MQIMSITDSNA-LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 M + T NA + L G I PT+TVYG+ + AI ++Y+ K+R +P Sbjct: 4 MNKVKYTSLNADYDEIGRLLKDGNLIIYPTDTVYGVGGIIESDEAITKVYKAKERSFKSP 63 Query: 60 LICHVSDISMVKKHASVDPLSL----HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115 LI VSD+S +++ A ++ + L K FWPG LT++L+ ++ + + KT Sbjct: 64 LIVLVSDVSKIEEIAYIEEKNREKIEKLIKKFWPGGLTIILN--KKENVPDIMVSGGKTV 121 Query: 116 CFRVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174 R+P K+IE G L SAN SG+ + + + LS + + + +++DGG I Sbjct: 122 GVRMPDLDTALKIIEAAGGLLPTTSANISGEATPKSYEE-LSEAFKERVEILVDGGKCPI 180 Query: 175 GLESTIVNVQCEKKVRILRPGG 196 G STI+++ K +ILR G Sbjct: 181 GNASTIIDMS--DKPKILRTGA 200 >gi|322614979|gb|EFY11904.1| hypothetical protein SEEM315_01811 [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621427|gb|EFY18281.1| hypothetical protein SEEM971_11630 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623231|gb|EFY20073.1| hypothetical protein SEEM973_05841 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628521|gb|EFY25309.1| hypothetical protein SEEM974_16300 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633685|gb|EFY30425.1| hypothetical protein SEEM201_01494 [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638507|gb|EFY35202.1| hypothetical protein SEEM202_14835 [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640823|gb|EFY37472.1| hypothetical protein SEEM954_09139 [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645313|gb|EFY41841.1| hypothetical protein SEEM054_03164 [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651804|gb|EFY48176.1| hypothetical protein SEEM675_03227 [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654299|gb|EFY50621.1| hypothetical protein SEEM965_10369 [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659264|gb|EFY55512.1| hypothetical protein SEEM19N_12191 [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662734|gb|EFY58941.1| hypothetical protein SEEM801_18172 [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667655|gb|EFY63815.1| hypothetical protein SEEM507_07019 [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671931|gb|EFY68052.1| hypothetical protein SEEM877_04046 [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677023|gb|EFY73087.1| hypothetical protein SEEM867_17434 [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322680315|gb|EFY76354.1| hypothetical protein SEEM180_05885 [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685256|gb|EFY81252.1| hypothetical protein SEEM600_09039 [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195434|gb|EFZ80613.1| hypothetical protein SEEM581_00405 [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199315|gb|EFZ84409.1| hypothetical protein SEEM501_04659 [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204773|gb|EFZ89769.1| hypothetical protein SEEM460_05081 [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205931|gb|EFZ90894.1| hypothetical protein SEEM020_06034 [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323209959|gb|EFZ94868.1| hypothetical protein SEEM6152_14301 [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217256|gb|EGA01977.1| hypothetical protein SEEM0077_19770 [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220711|gb|EGA05156.1| hypothetical protein SEEM0047_22885 [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227965|gb|EGA12117.1| hypothetical protein SEEM0055_13137 [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323232120|gb|EGA16227.1| hypothetical protein SEEM0052_17269 [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234647|gb|EGA18734.1| hypothetical protein SEEM3312_15960 [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238099|gb|EGA22158.1| hypothetical protein SEEM5258_03733 [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243297|gb|EGA27316.1| hypothetical protein SEEM1156_03139 [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248446|gb|EGA32381.1| hypothetical protein SEEM9199_22439 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252552|gb|EGA36395.1| hypothetical protein SEEM8282_02206 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255423|gb|EGA39189.1| hypothetical protein SEEM8283_12880 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260825|gb|EGA44427.1| hypothetical protein SEEM8284_12339 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267588|gb|EGA51071.1| hypothetical protein SEEM8285_08414 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270946|gb|EGA54382.1| hypothetical protein SEEM8287_13334 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 206 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 44/188 (23%), Positives = 77/188 (40%), Gaps = 4/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A + + G I PT++ Y L + A+ R+ I+ P + D+S Sbjct: 14 QRLINQAVDIVLKGGVIVYPTDSGYALGCKIEDKGAMERICRIRHLPDGHNFTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + ++ VD ++ L K PG T +L L KT RVP L Sbjct: 74 ELSTYSYVDNVAFRLMKNNTPGNYTFILKGTKEVP-RRLLQEKRKTIGLRVPSNPIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++T G P+ S G + + + K++ LII GG +T++++ + Sbjct: 133 LDTLGEPMLSTSLMLPGSDFTESDPEEIKDRLEKQVDLIIHGGYLGQ-QPTTVIDLTNDS 191 Query: 188 KVRILRPG 195 V +LR G Sbjct: 192 PV-VLREG 198 >gi|110832995|ref|YP_691854.1| Sua5/YciO/YrdC/YwlC family protein [Alcanivorax borkumensis SK2] gi|123345894|sp|Q0VTD8|RIMN_ALCBS RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|110646106|emb|CAL15582.1| Sua5/YciO/YrdC/YwlC family protein [Alcanivorax borkumensis SK2] Length = 182 Score = 174 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 43/178 (24%), Positives = 81/178 (45%), Gaps = 4/178 (2%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A + + G +A PTE+VYGL D N A+ +L IK RP LI ++ + + Sbjct: 8 AAQIIQEGGVVAYPTESVYGLGCDPFNRNAVMQLLAIKHRPVSKGLILIGESLAQLAPYL 67 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133 ++ + WP P+T ++D ++ + + RVP ++L + G Sbjct: 68 HLNEQQSAQLEKKWPAPITYLVD--ASDRLPAWVRGEHRKVAVRVPDHPLARQLCQLAGQ 125 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 P+ SAN SG+ + N + + ++ I+ G + STI++++ + +R Sbjct: 126 PIISTSANISGRPAARNRYQVAR-QLGNQLDFIVSGACDRAAKPSTIIDLESGRILRP 182 >gi|258626121|ref|ZP_05720972.1| Sua5/YciO/YrdC family protein [Vibrio mimicus VM603] gi|262172819|ref|ZP_06040497.1| YrdC family protein [Vibrio mimicus MB-451] gi|258581647|gb|EEW06545.1| Sua5/YciO/YrdC family protein [Vibrio mimicus VM603] gi|261893895|gb|EEY39881.1| YrdC family protein [Vibrio mimicus MB-451] Length = 185 Score = 174 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 51/190 (26%), Positives = 87/190 (45%), Gaps = 10/190 (5%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + L++A L +G IA PTE V+GL D N A+ RL IK+RP +I ++ Sbjct: 2 DNLQQAVHVLQSGGVIAYPTEGVFGLGCDPDNQAAMLRLLAIKQRPIEKGVILIAANYEQ 61 Query: 70 VKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 ++ + + L+ WP PLT V+ ++ T RV + Sbjct: 62 LRPYIDENQLTADQLAQVLASWPAPLTWVMP--ASIHTPSWVRGQFDTVAVRVSNHPLVQ 119 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +L +G PL SAN SGQ + T + ++ + + +I +++G S S I + + Sbjct: 120 QLCLAFGKPLTSTSANLSGQSACTTQQEVV-AQLGSQIEAVLEGKTSGRCGPSEIRDARS 178 Query: 186 EKKVRILRPG 195 +++LR G Sbjct: 179 ---LQVLRQG 185 >gi|257468920|ref|ZP_05633014.1| SUA5 protein [Fusobacterium ulcerans ATCC 49185] Length = 216 Score = 174 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 64/202 (31%), Positives = 104/202 (51%), Gaps = 11/202 (5%) Query: 1 MQIMSITDSNA-LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 M + T NA + L G I PT+TVYG+ + AI ++Y+ K+R +P Sbjct: 1 MNKVKYTSLNADYDEIGRLLKDGNLIIYPTDTVYGVGGIIESDEAITKVYKAKERSFKSP 60 Query: 60 LICHVSDISMVKKHASVDPLSL----HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115 LI VSD+S +++ A ++ + L K FWPG LT++L+ ++ + + KT Sbjct: 61 LIVLVSDVSKIEEIAYIEEKNREKIEKLIKKFWPGGLTIILN--KKENVPDIMVSGGKTV 118 Query: 116 CFRVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174 R+P K+IE G L SAN SG+ + + + LS + + + +++DGG I Sbjct: 119 GVRMPDLDTALKIIEAAGGLLPTTSANISGEATPKSYEE-LSEAFKERVEILVDGGKCPI 177 Query: 175 GLESTIVNVQCEKKVRILRPGG 196 G STI+++ K +ILR G Sbjct: 178 GNASTIIDMS--DKPKILRTGA 197 >gi|322391880|ref|ZP_08065345.1| Sua5/YciO/YrdC family protein [Streptococcus peroris ATCC 700780] gi|321145360|gb|EFX40756.1| Sua5/YciO/YrdC family protein [Streptococcus peroris ATCC 700780] Length = 200 Score = 174 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 61/190 (32%), Positives = 100/190 (52%), Gaps = 8/190 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L+ G + +PTETVYGL + + A+ +Y++K+RP L +++ + ++ + P Sbjct: 9 LENGGAVVLPTETVYGLFAKALDEKAVEHVYQLKRRPKDKALNLNIASLEAIEFFSKNQP 68 Query: 79 LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136 L L + F PGPLT++L+ + + + LKT FR+P T LI G PL Sbjct: 69 TYLKRLVEAFLPGPLTIILE--ANDRVPYWVNSGLKTVGFRMPSHPITLDLIRETG-PLI 125 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SG +S K IL + + L D ++ G +STI+++ +K V+ILR G Sbjct: 126 GPSANISGHVSGIVFKDILKDFDQEVLGLEDDAFLT--GQDSTILDLSGDK-VKILRQGA 182 Query: 197 LEIETLKRAI 206 + E + + Sbjct: 183 ITREDILAEL 192 >gi|303260466|ref|ZP_07346434.1| Sua5/YciO/YrdC family protein [Streptococcus pneumoniae SP-BS293] gi|303262823|ref|ZP_07348760.1| Sua5/YciO/YrdC family protein [Streptococcus pneumoniae SP14-BS292] gi|303265293|ref|ZP_07351203.1| Sua5/YciO/YrdC family protein [Streptococcus pneumoniae BS397] gi|303266500|ref|ZP_07352387.1| Sua5/YciO/YrdC family protein [Streptococcus pneumoniae BS457] gi|303268381|ref|ZP_07354177.1| Sua5/YciO/YrdC family protein [Streptococcus pneumoniae BS458] gi|302636021|gb|EFL66519.1| Sua5/YciO/YrdC family protein [Streptococcus pneumoniae SP14-BS292] gi|302638378|gb|EFL68845.1| Sua5/YciO/YrdC family protein [Streptococcus pneumoniae SP-BS293] gi|302642102|gb|EFL72453.1| Sua5/YciO/YrdC family protein [Streptococcus pneumoniae BS458] gi|302643951|gb|EFL74211.1| Sua5/YciO/YrdC family protein [Streptococcus pneumoniae BS457] gi|302645158|gb|EFL75395.1| Sua5/YciO/YrdC family protein [Streptococcus pneumoniae BS397] Length = 209 Score = 174 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 61/197 (30%), Positives = 102/197 (51%), Gaps = 8/197 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + L+ G + +PTETVYGL + + A+ +Y++K+RP L +++ + Sbjct: 11 IDRIRQELENGGAVVLPTETVYGLFAKALDEKAVDHVYQLKRRPRDKALNLNIASFEDIL 70 Query: 72 KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P L L + F PGPLT++L+ + + ++L T FR+P T LI Sbjct: 71 HFSKNQPTYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIR 128 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL PSAN SGQ S + IL + + L D ++ G +STIV++ +K V Sbjct: 129 ETG-PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGDK-V 184 Query: 190 RILRPGGLEIETLKRAI 206 +ILR G ++ E + + Sbjct: 185 KILRQGAIKREDILARL 201 >gi|53719872|ref|YP_108858.1| hypothetical protein BPSL2262 [Burkholderia pseudomallei K96243] gi|53723777|ref|YP_103302.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei ATCC 23344] gi|76812077|ref|YP_334088.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 1710b] gi|121599611|ref|YP_993496.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei SAVP1] gi|124385702|ref|YP_001029074.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei NCTC 10229] gi|126440920|ref|YP_001059595.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 668] gi|126450648|ref|YP_001081004.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei NCTC 10247] gi|126453661|ref|YP_001066876.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 1106a] gi|134277533|ref|ZP_01764248.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 305] gi|167001768|ref|ZP_02267560.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei PRL-20] gi|167720315|ref|ZP_02403551.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei DM98] gi|167816526|ref|ZP_02448206.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 91] gi|167824921|ref|ZP_02456392.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 9] gi|167846438|ref|ZP_02471946.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei B7210] gi|167895016|ref|ZP_02482418.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 7894] gi|167903401|ref|ZP_02490606.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei NCTC 13177] gi|167911654|ref|ZP_02498745.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 112] gi|167919652|ref|ZP_02506743.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei BCC215] gi|217420441|ref|ZP_03451946.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 576] gi|226198927|ref|ZP_03794490.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei Pakistan 9] gi|237812987|ref|YP_002897438.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei MSHR346] gi|238561611|ref|ZP_00441723.2| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei GB8 horse 4] gi|242315443|ref|ZP_04814459.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 1106b] gi|254177849|ref|ZP_04884504.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei ATCC 10399] gi|254184394|ref|ZP_04890984.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 1655] gi|254191427|ref|ZP_04897931.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei Pasteur 52237] gi|254195745|ref|ZP_04902171.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei S13] gi|254200256|ref|ZP_04906622.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei FMH] gi|254209334|ref|ZP_04915680.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei JHU] gi|254261445|ref|ZP_04952499.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 1710a] gi|254297059|ref|ZP_04964512.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 406e] gi|254357996|ref|ZP_04974269.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei 2002721280] gi|52210286|emb|CAH36265.1| conserved hypothetical protein [Burkholderia pseudomallei K96243] gi|52427200|gb|AAU47793.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei ATCC 23344] gi|76581530|gb|ABA51005.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 1710b] gi|121228421|gb|ABM50939.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei SAVP1] gi|124293722|gb|ABN02991.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei NCTC 10229] gi|126220413|gb|ABN83919.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 668] gi|126227303|gb|ABN90843.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 1106a] gi|126243518|gb|ABO06611.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei NCTC 10247] gi|134251183|gb|EBA51262.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 305] gi|147749852|gb|EDK56926.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei FMH] gi|147750107|gb|EDK57178.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei JHU] gi|148027123|gb|EDK85144.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei 2002721280] gi|157807680|gb|EDO84850.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 406e] gi|157939099|gb|EDO94769.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei Pasteur 52237] gi|160698888|gb|EDP88858.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei ATCC 10399] gi|169652490|gb|EDS85183.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei S13] gi|184214925|gb|EDU11968.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 1655] gi|217395853|gb|EEC35870.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 576] gi|225929027|gb|EEH25051.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei Pakistan 9] gi|237505250|gb|ACQ97568.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei MSHR346] gi|238524204|gb|EEP87638.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei GB8 horse 4] gi|242138682|gb|EES25084.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 1106b] gi|243062460|gb|EES44646.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei PRL-20] gi|254220134|gb|EET09518.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 1710a] Length = 209 Score = 174 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 52/193 (26%), Positives = 84/193 (43%), Gaps = 4/193 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +R+A E + G IA+PT++ Y LA + A+ R+ I+ L V D+S Sbjct: 14 PRLVRQAAEIVRGGGVIALPTDSSYALACHLDDKDAVERVRRIRGLDDKQHLSLLVRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + A VD L K PGP +L LS + KT RVP T L Sbjct: 74 ELATFAMVDNRQYRLIKSVTPGPYVFILQATKEVP-RRLSHPSRKTIGLRVPAHAITLAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL + N + + + K++ L+IDGG ST++++ ++ Sbjct: 133 LEALGQPLLGTTLILPPDDEPLNDPEEIRARLEKQVDLVIDGGACPR-EPSTVIDLTGDE 191 Query: 188 KVRILRPGGLEIE 200 +++R G +E Sbjct: 192 P-QLVRAGRGPLE 203 >gi|322376708|ref|ZP_08051201.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus sp. M334] gi|321282515|gb|EFX59522.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus sp. M334] Length = 200 Score = 174 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 60/193 (31%), Positives = 102/193 (52%), Gaps = 8/193 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + L+ G + +PTETVYGL + + A+ +Y++K RP L +++ + + Sbjct: 2 MDRIRQELENGGAVVLPTETVYGLFAKALDEKAVDHVYQLKHRPRDKALNLNIASLEDIL 61 Query: 72 KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P L L ++F PGPLT++L+ + + + L T FR+P FT LI Sbjct: 62 HFSKNQPAYLQKLVEIFLPGPLTIILE--ANDRVPYWVNSGLATVGFRMPSHPFTLNLIR 119 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL PSAN SGQ S + IL + + + D ++ G +STI+++ +K V Sbjct: 120 ETG-PLIGPSANISGQASGVTFEQILEDFDQEVLGMEDDAFLT--GQDSTILDLSGDK-V 175 Query: 190 RILRPGGLEIETL 202 +ILR G ++ E + Sbjct: 176 KILRQGTIKREDI 188 >gi|307706538|ref|ZP_07643345.1| yrdC domain protein [Streptococcus mitis SK321] gi|307617993|gb|EFN97153.1| yrdC domain protein [Streptococcus mitis SK321] Length = 199 Score = 174 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 58/196 (29%), Positives = 99/196 (50%), Gaps = 6/196 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + L+ G + +PTETVYGL + + A+ +Y+IK+RP L +++ + + Sbjct: 1 MDRIKQELENGGAVVLPTETVYGLFAKALDEKAVNHVYQIKRRPRDKALNLNIASLEDIL 60 Query: 72 KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130 + P L L + F PGPLT++L+ + + + L T FR+P T + Sbjct: 61 YFSKNQPTYLQKLVETFLPGPLTIILE--ANDRVPYWVNSGLATVGFRMPSHPTTLDLIR 118 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 PL PSAN SGQ S IL + + L D ++ G +STI+++ +K V+ Sbjct: 119 ETGPLIGPSANISGQESGVTFNQILEDFDQEVLGLEDDAFLT--GQDSTILDLSGDK-VK 175 Query: 191 ILRPGGLEIETLKRAI 206 ILR G ++ E + + Sbjct: 176 ILRQGAIKREDILARL 191 >gi|331695521|ref|YP_004331760.1| Sua5/YciO/YrdC/YwlC family protein [Pseudonocardia dioxanivorans CB1190] gi|326950210|gb|AEA23907.1| Sua5/YciO/YrdC/YwlC family protein [Pseudonocardia dioxanivorans CB1190] Length = 214 Score = 174 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 49/193 (25%), Positives = 87/193 (45%), Gaps = 5/193 (2%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-VDPLS 80 G + +PT+TVYG+ D+ + TA+R L K R P+ V S + V + Sbjct: 26 GNLVVLPTDTVYGIGCDAFSATAVRSLLAAKGRGPDMPVPVLVGSWSTIDGLVIGVPTAA 85 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSA 140 L + FWPG L+LVL + + T R+P + P+A+ SA Sbjct: 86 RELIEAFWPGGLSLVLQHAPS--LAWDLGTTRGTVMLRMPLHPVALELLRDVGPMAVSSA 143 Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200 NRSG + + + + + + +DGG ++ + ST+V++ + R+LR G + + Sbjct: 144 NRSGHAPAVDAA-DAVAQLGEHVAVYLDGGPTEENVPSTVVDLTADAP-RVLREGAVSVA 201 Query: 201 TLKRAISVELEYC 213 + + E+ Sbjct: 202 AISEVLGREVASA 214 >gi|126664113|ref|ZP_01735106.1| translation factor [Flavobacteria bacterium BAL38] gi|126623827|gb|EAZ94522.1| translation factor [Flavobacteria bacterium BAL38] Length = 206 Score = 174 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 50/209 (23%), Positives = 89/209 (42%), Gaps = 13/209 (6%) Query: 2 QIMSITD----SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 +I+ I + A++K L G + PT+TVYGL D N A+ +L +IK Sbjct: 3 EIIKIYEDKPSEAAIKKVVSVLKDGGLVIYPTDTVYGLGCDITNSRALEKLAKIKGIKLE 62 Query: 58 NP-LICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115 S +S + + +D + + K PGP T +L + P KT Sbjct: 63 KANFSFVCSSLSNLSDYVKQIDTSTFKILKRALPGPYTFILP---GNNDLPREFRKKKTV 119 Query: 116 CFRVP-CGFTKKLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISK 173 RVP +++E G+P+ S + I + ++ ++ L+IDGG Sbjct: 120 GIRVPANNIALQIVEMLGNPIVSTSIRDEDEVIEYSTDPELIFEKWQNKVDLVIDGGYGD 179 Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIETL 202 + STI+++ + ++R G ++ L Sbjct: 180 -NVASTIIDLTGHEP-EVIREGKGSLDVL 206 >gi|323496967|ref|ZP_08101995.1| Sua5/YciO/YrdC family protein [Vibrio sinaloensis DSM 21326] gi|323318041|gb|EGA71024.1| Sua5/YciO/YrdC family protein [Vibrio sinaloensis DSM 21326] Length = 185 Score = 174 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 43/185 (23%), Positives = 76/185 (41%), Gaps = 7/185 (3%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +A L G IA PTE V+G+ D NP AI +L +K+RP LI + Sbjct: 2 ENFDQALNALKQGEVIAYPTEGVFGVGCDPDNPEAIEKLLTLKQRPVEKGLILIAASYQQ 61 Query: 70 VKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + + LS K WPGP+T ++ + + + + RV + Sbjct: 62 LLPYIDETQLSEEQLKRVHQTWPGPVTWIMPC--SDKVSSWVSGQFDSIAVRVTDHPLVQ 119 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 K+ +G PL SAN +G+ + + + ++ +++G S I + + Sbjct: 120 KMCNAFGKPLTSTSANLTGEPPCMTTEEVYR-QLGDKLVAVLEGETGGRDKPSEIRDAKT 178 Query: 186 EKKVR 190 + +R Sbjct: 179 SQVLR 183 >gi|319939132|ref|ZP_08013496.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus anginosus 1_2_62CV] gi|319812182|gb|EFW08448.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus anginosus 1_2_62CV] Length = 196 Score = 174 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 65/197 (32%), Positives = 99/197 (50%), Gaps = 8/197 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + K E L +G + +PTETVYGL + + A+ +Y++K RP L +VS + + Sbjct: 1 MDKIEEVLSSGGAVVLPTETVYGLFCKALDEQAVSHVYDLKGRPREKALNLNVSSLEEIY 60 Query: 72 KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIE 129 + + P L L + F PGPLT++L + + + +KT FRVP T LI Sbjct: 61 QFSKHQPQYLKKLYQAFLPGPLTIILQ--ANEQVPIWVNSGMKTIGFRVPSHPKTLDLIR 118 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 +G PL PSAN SG+ S N + I++ E+ I D G +STI+++ E Sbjct: 119 KFG-PLIGPSANLSGKSSGVNFQQIMTD-FNHEVLGIEDDAF-LTGQDSTILDLSGE-TA 174 Query: 190 RILRPGGLEIETLKRAI 206 ILR G + E + I Sbjct: 175 YILRQGAVTCEEILAKI 191 >gi|257052622|ref|YP_003130455.1| Sua5/YciO/YrdC/YwlC family protein [Halorhabdus utahensis DSM 12940] gi|256691385|gb|ACV11722.1| Sua5/YciO/YrdC/YwlC family protein [Halorhabdus utahensis DSM 12940] Length = 198 Score = 174 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 58/204 (28%), Positives = 94/204 (46%), Gaps = 10/204 (4%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 +T + L A E + +G + PTETVYGL D+ + AI ++E K+R NPL V+ Sbjct: 1 MTRDSDLTAAAEVVKSGGLVVYPTETVYGLGADALDTAAIEAVFETKRRDRDNPLSLGVA 60 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 + + S + F PGP+T+V++ + T R+P Sbjct: 61 SVEAALDYVSPSVTEQRFMQEFLPGPVTVVVEGRD--PVPDALTGGRDRVGVRIPDHDLA 118 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 ++L+E G PL SAN SGQ S+T+ L + I +I+DGG + G ST+V+V Sbjct: 119 RELLERSG-PLTATSANVSGQPSVTDPAD-LDAEIRTAAGVILDGGETP-GTASTVVDVS 175 Query: 185 CEKKVRILRPGGLEIETLKRAISV 208 + G + ++ + Sbjct: 176 RG----TIHRRGANADAVEDWLET 195 >gi|225024541|ref|ZP_03713733.1| hypothetical protein EIKCOROL_01416 [Eikenella corrodens ATCC 23834] gi|224942692|gb|EEG23901.1| hypothetical protein EIKCOROL_01416 [Eikenella corrodens ATCC 23834] Length = 206 Score = 174 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 41/189 (21%), Positives = 74/189 (39%), Gaps = 5/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E + G I PT++ Y L N A+ R+ I++ + L +D+S Sbjct: 14 ERLVKQAAEIVRQGGVIVYPTDSCYALGCQMGNKEAMERILAIRQIDLKHHLTLMCADLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD K PG T +L L KT RVP L Sbjct: 74 ELGTYAKVDNSQFRQLKAATPGAYTFILPATKEVPNRTL-HPKRKTIGLRVPDNKIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G P+ + + + + + + + LIIDGG +T++++ Sbjct: 133 LAELGEPMLSCTLMLPEETEPQTDPYEIRNLLEHAVDLIIDGGWCGT-EPTTVIDMTNGT 191 Query: 188 KVRILRPGG 196 ++ +R G Sbjct: 192 EL--IRQGA 198 >gi|308272719|emb|CBX29323.1| hypothetical protein N47_J03040 [uncultured Desulfobacterium sp.] Length = 253 Score = 174 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 59/220 (26%), Positives = 101/220 (45%), Gaps = 10/220 (4%) Query: 2 QIMSIT----DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 +I+ I + ++KA + +G + P +YGLA D+ N TA+++++EIK R Sbjct: 31 KIIKIDPDNPEPELIKKAASVIRSGGVVVFPARCLYGLAADAFNETAVQKVFEIKGRTEK 90 Query: 58 NPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 PL+ M+ + P++ + K FWPG +T++L+ + + TA Sbjct: 91 KPLLVLADSHLMISCIVKDITPMAQKIMKSFWPGLVTIILE--ANDSLCDNLTAGTGKIG 148 Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R P L++ G P+ SAN SG ++ + I +++ LI+D G K G Sbjct: 149 VRKPGHPVALALVKAVGGPVTGTSANPSGASGCYDITD-IDPEIAEKVDLILDAGTLKGG 207 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD 215 ST+V+V E V I+R G + + A Y Sbjct: 208 TGSTVVDVTGEVPV-IIREGEVSGNEILAASGASAVYETS 246 >gi|261253232|ref|ZP_05945805.1| YrdC family protein [Vibrio orientalis CIP 102891] gi|260936623|gb|EEX92612.1| YrdC family protein [Vibrio orientalis CIP 102891] Length = 206 Score = 174 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 40/188 (21%), Positives = 74/188 (39%), Gaps = 4/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A + G + PT++ Y L N A+ R+ +I++ + D+S Sbjct: 14 ARLINQAVAIIRNGGVVVYPTDSGYALGCQLENKQALERICQIRRLDDKHNFTLLCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD + L K PGP T + L + KT RVP L Sbjct: 74 ELSLYARVDNGAFRLLKNNTPGPFTFIFKGTKEVP-RRLMNSKRKTIGIRVPDNRIALDL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL S G + + + + I++GG +T+++ ++ Sbjct: 133 LEALGEPLMSTSLILPGNDITESDPEDIRDKLEHAVDCILNGGYLGE-QPTTVIDFSDDE 191 Query: 188 KVRILRPG 195 ++ R G Sbjct: 192 P-KVARLG 198 >gi|154509271|ref|ZP_02044913.1| hypothetical protein ACTODO_01796 [Actinomyces odontolyticus ATCC 17982] gi|293189725|ref|ZP_06608441.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces odontolyticus F0309] gi|153798905|gb|EDN81325.1| hypothetical protein ACTODO_01796 [Actinomyces odontolyticus ATCC 17982] gi|292821315|gb|EFF80258.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces odontolyticus F0309] Length = 224 Score = 174 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 56/211 (26%), Positives = 90/211 (42%), Gaps = 5/211 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 L +A L G + +PT+TVYG+ D+ NP A+ + K R P V+ + Sbjct: 18 EADLARAQRELRDGHLLVVPTDTVYGIGADAANPEAVAAVLAAKGRGRQMPPPVLVASVD 77 Query: 69 MVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 + + + LA+ FWPG LTL+L T T R+P Sbjct: 78 AIDLLCVDIPEAARALARAFWPGGLTLILRARPDLGWDLGETGG--TIGVRMPNQAALLR 135 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + P+A+ SAN +GQ T+V+ + + +DGG ++ S+IV+ E Sbjct: 136 LLHDFGPMAVTSANLTGQPPATSVEQAVG-YFGTRVSAYLDGGPTQGSTASSIVDFAHET 194 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETS 218 R+LR G + ++ L A V + S Sbjct: 195 P-RVLRFGTISLDDLSAAAGVPIAPVEGAAS 224 >gi|110834252|ref|YP_693111.1| Sua5/YciO/YrdC/YwlC family protein [Alcanivorax borkumensis SK2] gi|110647363|emb|CAL16839.1| Sua5/YciO/YrdC/YwlC family protein [Alcanivorax borkumensis SK2] Length = 207 Score = 174 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 44/195 (22%), Positives = 80/195 (41%), Gaps = 3/195 (1%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +R+A E + G IA PT+T Y L A+ RL +++ + D+S Sbjct: 14 PRLIRQAVEVIRGGGLIAYPTDTTYALGCGIGEKNALDRLIRLRQLDKKHEFTLLCHDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD L K PGP T +L + L +T RVP + L Sbjct: 74 ALAIYAKVDNPDYRLLKAHTPGPYTFILQGTTEVP-RRLMHPKKRTIGIRVPDHAICQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + +G P+ + + + + + L+IDGG +E+T++++ + Sbjct: 133 LAEHGEPIMTSTCHLPNDEFPLTDPQDVRDFLDHHVDLVIDGGFCGT-VETTVISLSQGE 191 Query: 188 KVRILRPGGLEIETL 202 ++R G I+ + Sbjct: 192 GPEVVREGAGPIDAI 206 >gi|332361223|gb|EGJ39027.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK1056] Length = 196 Score = 174 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 67/193 (34%), Positives = 103/193 (53%), Gaps = 8/193 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + K + L AG + +PTETVYGL + N A+ R+YE+K+RP L +V+ + + Sbjct: 1 MDKIEKTLAAGGAVVLPTETVYGLFAQALNEEAVERVYELKRRPRDKALNLNVASLEEIY 60 Query: 72 KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129 + P L HL + F PGPLT++L + + + +T FR+P T LI Sbjct: 61 AFSKNQPSYLDHLYQAFLPGPLTIILQ--ANDRVPAWINSGKETVGFRIPKHPVTLDLIR 118 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 YG PL PSAN SG+ S T+ + I+ +E+ + D S G +STI+++ EK + Sbjct: 119 KYG-PLIGPSANLSGKASGTSFQQIMMD-FQEEVSGVEDDD-SLTGQDSTILDLSGEKAL 175 Query: 190 RILRPGGLEIETL 202 ILR G + E + Sbjct: 176 -ILRQGVITREDI 187 >gi|224369573|ref|YP_002603737.1| hypothetical protein HRM2_24790 [Desulfobacterium autotrophicum HRM2] gi|223692290|gb|ACN15573.1| conserved hypothetical protein [Desulfobacterium autotrophicum HRM2] Length = 202 Score = 174 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 48/192 (25%), Positives = 85/192 (44%), Gaps = 6/192 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + + L G IA PT+T YG+ D N AI ++Y+IK+R P +D+ Sbjct: 12 PRLISQIVDALRQGGIIAYPTDTHYGIGCDIMNKKAIEKVYQIKQRSKNQPFSFICADLK 71 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + ++A V + K PGP T +L + + + KTA RVP + Sbjct: 72 HISEYAKVSTFAYRNMKRLLPGPYTFILQ--GSKLVPKMMLTKRKTAGIRVPDNAIALAI 129 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G+P+ SA +L + + L++DGG G +S++V++ + Sbjct: 130 AKELGNPVLSTSATGPDD-RPFEDPSLLHDWFGQRLELVVDGGPVP-GTDSSVVSLIDDV 187 Query: 188 KVRILRPGGLEI 199 I+R G ++ Sbjct: 188 P-EIIRYGAGDV 198 >gi|167563323|ref|ZP_02356239.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia oklahomensis EO147] Length = 209 Score = 174 bits (442), Expect = 1e-41, Method: Composition-based stats. Identities = 52/193 (26%), Positives = 84/193 (43%), Gaps = 4/193 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E + G IA+PT++ Y LA + A+ R+ I+ L V D+S Sbjct: 14 PRLIKQAAEIVRGGGVIALPTDSSYALACHLDDKDAVERVRRIRGLDEKQHLSLLVRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + A VD L K PGP +L LS + KT RVP T L Sbjct: 74 ELAAFAMVDNRQYRLIKSVTPGPYVFILQATKEVP-RRLSHPSRKTIGLRVPAHAITLAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL + S N + + + K+ L+IDGG ST++++ ++ Sbjct: 133 LEALGQPLLGTTLILSPDDEPLNDPEEIRTRLEKQADLVIDGGACPR-EPSTVIDLTGDE 191 Query: 188 KVRILRPGGLEIE 200 +++R G +E Sbjct: 192 P-QLVRAGRGPLE 203 >gi|269219855|ref|ZP_06163709.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 848 str. F0332] gi|269210760|gb|EEZ77100.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 848 str. F0332] Length = 205 Score = 174 bits (442), Expect = 1e-41, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 94/206 (45%), Gaps = 6/206 (2%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+++ D+ A A + GL + +PT+TVYGL D R+P A+ RL K R P Sbjct: 1 MRVIDSADAAAAGAAAAAVREGLLVVLPTDTVYGLGADPRSPRAVDRLLTAKGRGRDKPS 60 Query: 61 ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 V+ ++ ++ A ++ L FWPG LTLVL + + T R+ Sbjct: 61 PVLVASVAQAEELAREAPDVAKALMAEFWPGALTLVLP---SERLGWDLGETNGTIALRM 117 Query: 120 PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 P + PLA+ SAN SG+ V + + ++ + +DGG G ST Sbjct: 118 PNHPAALELLKEAGPLAVSSANLSGRPPAATVGEAV-EQLGGKVAVYLDGGPCPGGAPST 176 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRA 205 IV+ +R+LR GG+ L R Sbjct: 177 IVSF-DGGLMRVLREGGVGRGELARF 201 >gi|152979360|ref|YP_001344989.1| Sua5/YciO/YrdC/YwlC family protein [Actinobacillus succinogenes 130Z] gi|150841083|gb|ABR75054.1| Sua5/YciO/YrdC/YwlC family protein [Actinobacillus succinogenes 130Z] Length = 207 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 56/195 (28%), Positives = 89/195 (45%), Gaps = 7/195 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S + +A E L G I PT++ Y L + A+ R+ I+ P + SD+S Sbjct: 14 SRLINQAVEILRNGGVIVYPTDSGYALGCMIGDKHAMDRIVAIRHLPQGHNFTLVCSDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A+V ++ L K PG T +L L T+ KT RVP L Sbjct: 74 ELSHYATVSNVAYRLIKNNTPGRYTFILTATKELP-RRLMTSKRKTIGLRVPDNQIALDL 132 Query: 128 IETYGHPLAIPSANRSGQISIT-NVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQC 185 ++T G P+ S G+ IT + + + +++ LII GG +G E +T+V++ Sbjct: 133 LKTLGEPILSCSLMLPGEDHITQSDPEEIRDRLERQVELIIHGGY--LGQEPTTVVDLTD 190 Query: 186 EKKVRILRPGGLEIE 200 E V ILR G +E Sbjct: 191 ETPV-ILREGSGSVE 204 >gi|326800728|ref|YP_004318547.1| Sua5/YciO/YrdC/YwlC family protein [Sphingobacterium sp. 21] gi|326551492|gb|ADZ79877.1| Sua5/YciO/YrdC/YwlC family protein [Sphingobacterium sp. 21] Length = 235 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 47/196 (23%), Positives = 88/196 (44%), Gaps = 8/196 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSD 66 + A+ + L G I PT+TVYG+ D N AI L I+ +P L D Sbjct: 40 NERAIEQVVAVLKKGGIIIYPTDTVYGIGCDITNQKAIETLCRIRGIKPEKANLSFICYD 99 Query: 67 ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124 ++ + ++ +D + L K PGP T + + ++ + L ++N KT RVP Sbjct: 100 LTDIAQYTKPIDTATFRLLKKSLPGPFTYIFN--ASNQVPKLMSSNKKTVGIRVPDNNIA 157 Query: 125 KKLIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 ++++ G+P+ S + +I + ++ + L+IDGG ST+V+ Sbjct: 158 REIVRQLGNPIVSASIHDEDEILEYSTDPELIHEKFQNLVDLVIDGGYGG-NEASTVVDC 216 Query: 184 QCEKKVRILRPGGLEI 199 + ++R G ++ Sbjct: 217 TS-GEFDVIRQGKGDL 231 >gi|170694767|ref|ZP_02885918.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia graminis C4D1M] gi|170140398|gb|EDT08575.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia graminis C4D1M] Length = 211 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 49/189 (25%), Positives = 84/189 (44%), Gaps = 3/189 (1%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A + ++ G +A+PT++ Y LA + A+ RL I+ L V D+S Sbjct: 14 PRLVKQAVQIINDGGVVALPTDSSYALACHLDDKDAVERLRRIRGLDEKQLLSLLVRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + A VD L K PGP VL LS + KT RVP T + Sbjct: 74 ELANFAMVDNRQYRLIKSVTPGPYVFVLQATKEVP-RRLSHPSRKTIGLRVPDHAITLAI 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + G+ + N + + + K++ L+IDGG + ST++++ ++ Sbjct: 133 LGELGQPLLGSTLILPGETAPLNEPEEIRARLEKQLDLVIDGGAC-VCEPSTVIDLTGDE 191 Query: 188 KVRILRPGG 196 V + G Sbjct: 192 PVLVRAGRG 200 >gi|90021364|ref|YP_527191.1| hypothetical protein Sde_1719 [Saccharophagus degradans 2-40] gi|89950964|gb|ABD80979.1| Sua5/YciO/YrdC/YwlC [Saccharophagus degradans 2-40] Length = 207 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 49/200 (24%), Positives = 82/200 (41%), Gaps = 8/200 (4%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 Q SI N + ++ + + G IA PT++ Y L + A+ R+ I++ Sbjct: 3 QFFSIHPENPQARLISQSVDIVRRGGLIAYPTDSAYALGCHIGDKLALDRIRAIRQLDKD 62 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 + D+S + +A VD L K PG T +L S L KT Sbjct: 63 HNFTLMCRDLSELANYAKVDNAVFRLIKSHTPGAYTFILPATSEVP-RRLMHPKRKTLGL 121 Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 RVP L++ G PL S G + + S+ ++ L+IDGG + Sbjct: 122 RVPNNPIALALMDALGEPLMSSSLILPGDTVPLTDPYDIRESLEHQLELVIDGGYCGM-E 180 Query: 177 ESTIVNVQCEKKVRILRPGG 196 +T+V++ ++ V + R G Sbjct: 181 PTTVVDLTGDEPV-VTRVGC 199 >gi|268326242|emb|CBH39830.1| conserved hypothetical protein, containing yrdC domain [uncultured archaeon] Length = 234 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 58/192 (30%), Positives = 88/192 (45%), Gaps = 9/192 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +R A + G I PTETVYGL D+ + TA+R++Y+IK+R P+ VS Sbjct: 24 ESQIRAAIAIIKRGGTIVYPTETVYGLGADALSETAVRKVYKIKRRDVSQPISVAVSSFE 83 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128 M+ K A DP + PGP+T++L + L TA R P I Sbjct: 84 MLHKVAYTDPGISEILFALLPGPVTVLLKKKEI--VPALLTAESDVLGVRFPDNEIATRI 141 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK- 187 P+ SAN SG+ T V+ + + + +II G K + ST+V++ Sbjct: 142 IEETGPITATSANVSGRTPPTCVEEVEIKFL---VDIIIHGSKCKYSMPSTVVDMTTANE 198 Query: 188 ---KVRILRPGG 196 K++I R G Sbjct: 199 GKAKIKIKRRGA 210 >gi|330811305|ref|YP_004355767.1| hypothetical protein PSEBR_a4356 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379413|gb|AEA70763.1| Conserved hypothetical protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 209 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 44/200 (22%), Positives = 83/200 (41%), Gaps = 8/200 (4%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 Q I N +++A E + G + PT++ Y + + A+ R+ +++ Sbjct: 3 QFFQIHPENPQARLIKQAVEIIRGGGVVVYPTDSSYAIGCQIGDKNAVERVRRLRQLDDK 62 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 + SD+S + A +D + L K PGP T +L+ L +T Sbjct: 63 HNFALICSDLSQLGLFAKIDTGTFRLLKAHLPGPYTFILNATREVP-RLLLHPKKRTIGL 121 Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 RVP L+ G PL + G+ + + + ++ LIIDGG + Sbjct: 122 RVPSHPIALALLAELGEPLMSVTLIMPGESEPLTDPYEMRQILEHQVDLIIDGGFGGMS- 180 Query: 177 ESTIVNVQCEKKVRILRPGG 196 ST++N+ + + +++R G Sbjct: 181 ASTVINL-ADGEPQVVRVGC 199 >gi|323492457|ref|ZP_08097605.1| hypothetical protein VIBR0546_15511 [Vibrio brasiliensis LMG 20546] gi|323313244|gb|EGA66360.1| hypothetical protein VIBR0546_15511 [Vibrio brasiliensis LMG 20546] Length = 206 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 41/182 (22%), Positives = 71/182 (39%), Gaps = 3/182 (1%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A + G + PT++ Y L N A+ R+ +I++ + D+S Sbjct: 14 ARLINQAVAIIRNGGVVVYPTDSGYALGCQLENKQALERICQIRRLNDKHNFTLLCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD + L K PGP T + L A KT RVP L Sbjct: 74 EISLYARVDNTAFRLLKNNTPGPYTFIFKGTKEVP-RRLMNAKRKTIGIRVPDNRIALDL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL S G + + + + I++GG +T+V+ ++ Sbjct: 133 LEALGEPLMSTSLILPGSDVTESDPEDIRDKLEHAVDCILNGGYLGE-QPTTVVDFSEDE 191 Query: 188 KV 189 V Sbjct: 192 PV 193 >gi|34763117|ref|ZP_00144087.1| SUA5 protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887215|gb|EAA24316.1| SUA5 protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 217 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 64/194 (32%), Positives = 97/194 (50%), Gaps = 9/194 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 + G I PT+TVYGL N +I +Y K R +PLI +S + V++ A V Sbjct: 25 IKKGSLIIYPTDTVYGLGAIVTNEQSINNIYLAKSRSFTSPLIALLSSVDKVEEVAYVSD 84 Query: 79 ----LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGH 133 L LAK FWPG LT++L I + + T R+P K+IE G Sbjct: 85 KNKNLLEKLAKAFWPGALTVILKRKEH--IPSIMVSGGDTIGVRIPNLDLAIKIIELAGG 142 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 LA SAN SG+ + + LS +I ++ ++ID G K+G STI+++ + +ILR Sbjct: 143 ILATTSANISGEATPKSYDE-LSEAIKSKVDILIDSGECKLGEASTIIDLTSDVP-KILR 200 Query: 194 PGGLEIETLKRAIS 207 G + I +++ I Sbjct: 201 KGAISIGEIEKIIG 214 >gi|302529791|ref|ZP_07282133.1| SUA5/YciO/YrdC/YwlC [Streptomyces sp. AA4] gi|302438686|gb|EFL10502.1| SUA5/YciO/YrdC/YwlC [Streptomyces sp. AA4] Length = 228 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 52/206 (25%), Positives = 92/206 (44%), Gaps = 5/206 (2%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 + + L A + + + +PT+TVYG+ D+ + A++ L K R P+ V Sbjct: 24 SRAEGLSAAAAAVRSSRLVVLPTDTVYGIGADAFDSGAVQALLRAKNRGPDMPVGVLVGS 83 Query: 67 ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125 S V V P + L + FWPG L++VL + + + T R+P Sbjct: 84 WSTVDGLVLGVPPQARALIEAFWPGDLSIVLPHAPSLQWN--LGNSRGTVMLRMPLHPVA 141 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 + P+A+ SAN SG+ + V+ + + + +DGG S + S+IV++ Sbjct: 142 LELLRDVGPMAVSSANVSGRSPASTVEDA-QEQLGDSVSVYLDGGSSGETVASSIVDLTG 200 Query: 186 EKKVRILRPGGLEIETLKRAISVELE 211 +K + +LR G + + I V E Sbjct: 201 DKPL-VLREGTVTKAAIAEVIGVAEE 225 >gi|161524350|ref|YP_001579362.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia multivorans ATCC 17616] gi|189350896|ref|YP_001946524.1| putative translation factor [Burkholderia multivorans ATCC 17616] gi|221198404|ref|ZP_03571450.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia multivorans CGD2M] gi|221208919|ref|ZP_03581916.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia multivorans CGD2] gi|221214750|ref|ZP_03587719.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia multivorans CGD1] gi|160341779|gb|ABX14865.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia multivorans ATCC 17616] gi|189334918|dbj|BAG43988.1| putative translation factor [Burkholderia multivorans ATCC 17616] gi|221165289|gb|EED97766.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia multivorans CGD1] gi|221171202|gb|EEE03652.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia multivorans CGD2] gi|221182336|gb|EEE14737.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia multivorans CGD2M] Length = 210 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 49/193 (25%), Positives = 84/193 (43%), Gaps = 4/193 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E ++ G +A+PT++ Y LA + A+ R+ I+ L V D+S Sbjct: 14 PRLIKQAVEIVNKGGVVAMPTDSSYALACHLDDKDAVERVRRIRGLDEKQHLSLLVRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + A VD K PGP +L LS + KT RVP T L Sbjct: 74 ELANFAMVDNRQYRQIKSVTPGPYVFILQATKEVP-RRLSHPSRKTIGLRVPDHAITLAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E+ G PL + N + + + K++ L+IDGG ST++++ + Sbjct: 133 LESLGQPLLGTTLILPPDDEPLNDPEDIRARLEKQVDLVIDGGACPR-EPSTVIDLTGDV 191 Query: 188 KVRILRPGGLEIE 200 +++R G +E Sbjct: 192 P-QLVRAGRGALE 203 >gi|332360648|gb|EGJ38457.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK49] Length = 196 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 65/193 (33%), Positives = 103/193 (53%), Gaps = 8/193 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + K + L AG + +PTETVYGL + N A+ R+YE+K+RP L +V+ I + Sbjct: 1 MDKIEKTLVAGGAVVLPTETVYGLFAQALNEEAVERVYELKRRPRDKALNLNVASIEEIY 60 Query: 72 KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129 + P L L + F PGPLT++L + + + ++T FR+P T LI Sbjct: 61 AFSKNQPSYLKQLYQAFLPGPLTIILQ--ANDRVPTWINSGMETVGFRIPKHPVTLDLIR 118 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 YG PL PSAN SG+ S T+ + I+ +++ + D + G +STI+++ EK + Sbjct: 119 KYG-PLIGPSANLSGKASGTSFQQIMMD-FQEQVSGVEDD-TALTGQDSTILDLSGEKAL 175 Query: 190 RILRPGGLEIETL 202 ILR G + E + Sbjct: 176 -ILRQGAITREDI 187 >gi|154489839|ref|ZP_02030100.1| hypothetical protein PARMER_00068 [Parabacteroides merdae ATCC 43184] gi|218258263|ref|ZP_03474665.1| hypothetical protein PRABACTJOHN_00320 [Parabacteroides johnsonii DSM 18315] gi|154089281|gb|EDN88325.1| hypothetical protein PARMER_00068 [Parabacteroides merdae ATCC 43184] gi|218225606|gb|EEC98256.1| hypothetical protein PRABACTJOHN_00320 [Parabacteroides johnsonii DSM 18315] Length = 202 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 46/193 (23%), Positives = 81/193 (41%), Gaps = 8/193 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSDIS 68 + K + G + PT+TVY + D+ N A+ ++ ++K P + L D+S Sbjct: 13 REIDKVVNIMRDGGLVIYPTDTVYAIGCDALNVRAVEKICQLKGVNPQKSNLSIICYDLS 72 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 + ++A V + L K PG T +L S P N K RVP + L Sbjct: 73 NLSEYAKVSNAAFKLMKKNLPGAFTFILPTSSEL---PKIYKNRKEVGIRVPDNNIIRTL 129 Query: 128 IETYGHPLAIPSANRSGQIS-ITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 + G+P+ S + +I + ++ + ++IDGG ST++N + Sbjct: 130 VRELGNPILTMSLHDKDEIIEYSTDPELIEEKYENLVDIVIDGGYGGT-EASTVINCTTD 188 Query: 187 KKVRILRPGGLEI 199 I+R G E+ Sbjct: 189 D-FEIIRQGKGEL 200 >gi|330817634|ref|YP_004361339.1| Sua5/YciO/YrdC/YwlC [Burkholderia gladioli BSR3] gi|327370027|gb|AEA61383.1| Sua5/YciO/YrdC/YwlC [Burkholderia gladioli BSR3] Length = 211 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 57/193 (29%), Positives = 85/193 (44%), Gaps = 4/193 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +R+A E + G IA+PT++ Y LA + TA+ R+ +I+ L V D+S Sbjct: 14 PRLVRQAVEIVKQGGVIAMPTDSSYALACHLDDKTAVERVRKIRGLDDKQLLSLLVRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + A VD L K PGP VL LS + KT RVP T + Sbjct: 74 ELANFAMVDNHQYRLIKSVTPGPYVFVLQATKEVP-RRLSHPSRKTIGLRVPDHAITLAV 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +ET G PL + N + + K++ L+IDGG STIV++ + Sbjct: 133 LETLGQPLLGTTLILPPDSDPLNDPEEIRERLEKQVDLVIDGGACPR-EPSTIVDLTGDA 191 Query: 188 KVRILRPGGLEIE 200 V ++R G +E Sbjct: 192 PV-LVRAGRGSLE 203 >gi|88859929|ref|ZP_01134568.1| putative RNA binding protein with YrdC/RibB domain [Pseudoalteromonas tunicata D2] gi|88817923|gb|EAR27739.1| putative RNA binding protein with YrdC/RibB domain [Pseudoalteromonas tunicata D2] Length = 206 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 88/205 (42%), Gaps = 5/205 (2%) Query: 1 MQI-MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 QI + + +R+A E + G I PT++ Y L N TA+ R+ I+ + Sbjct: 5 FQIHVDNPQTRLIRQAIEVIQKGGVIVYPTDSGYALGCSIGNKTAMERIQRIRSLEKHHN 64 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 L D+S + +A VD L K PG T + L KT RV Sbjct: 65 LTLVCCDLSELATYARVDNQMFRLVKNNTPGAYTFIFKGTKEVP-KRLLNDKKKTIGIRV 123 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T+ L+ G P+ S GQ + ++ S + K++ LIIDGG I + Sbjct: 124 PNHKITQALLAELGEPIMSCSLILPGQEHTESDPEVIRSLLEKQVDLIIDGGY-LIEQAT 182 Query: 179 TIVNVQCEKKVRILRPGGLEIETLK 203 T++++ + V ILR G ++ + Sbjct: 183 TVIDL-SDDSVEILRVGCGDVSPFE 206 >gi|325287671|ref|YP_004263461.1| Sua5/YciO/YrdC/YwlC family protein [Cellulophaga lytica DSM 7489] gi|324323125|gb|ADY30590.1| Sua5/YciO/YrdC/YwlC family protein [Cellulophaga lytica DSM 7489] Length = 206 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 46/197 (23%), Positives = 86/197 (43%), Gaps = 9/197 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP-LICHVSD 66 +++A++K + L G + PT+TVYGL D N A+ ++ IK +D Sbjct: 13 NADAIKKVVDVLKKGGLVIYPTDTVYGLGCDITNTKALEKIARIKGVKLAKANFSFICAD 72 Query: 67 ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 +S + ++ +D + + K PGP T +L + P KT RVP Sbjct: 73 LSNLSEYVKQIDTATFKILKRALPGPYTFILPGNNNL---PKDFKKKKTVGIRVPDNSIA 129 Query: 125 KKLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 +++ G+P+ S + + T ++ + ++IDGG ST+V++ Sbjct: 130 NAMVQALGNPIVSTSIRDEDELLEYTTDPELIYEKWDNLVDIVIDGGYGD-NTASTVVDL 188 Query: 184 QCEKKVRILRPGGLEIE 200 + + I+R G I+ Sbjct: 189 -SDGEPEIIREGKGSID 204 >gi|262392839|ref|YP_003284693.1| YrdC family protein [Vibrio sp. Ex25] gi|262336433|gb|ACY50228.1| YrdC family protein [Vibrio sp. Ex25] Length = 185 Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats. Identities = 46/185 (24%), Positives = 77/185 (41%), Gaps = 7/185 (3%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + + L G IA PTE V+G+ D NP AI++L E+K+RP LI + Sbjct: 2 DNFEQVLNALQQGEVIAYPTEGVFGVGCDPDNPEAIQKLLELKQRPVEKGLILIAASYEQ 61 Query: 70 VKKHASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + + P L WPGP T ++ ++ + + + RV + Sbjct: 62 LLPYIDESQLTPEQLATVHATWPGPYTWIMP--ASDKVSNWVSGQFDSIAVRVTDHPLVQ 119 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 K+ +G PL SAN SG N + + + ++ I+ G S S I + + Sbjct: 120 KMCNAFGKPLTSTSANLSGLPPCMNTEEV-EQQLGDKLVAILRGETSGRDKPSEIRDAKT 178 Query: 186 EKKVR 190 + +R Sbjct: 179 SQILR 183 >gi|312375719|gb|EFR23031.1| hypothetical protein AND_13789 [Anopheles darlingi] Length = 247 Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats. Identities = 58/198 (29%), Positives = 102/198 (51%), Gaps = 8/198 (4%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 +++ITD +A+R+A L++G IA+PT+TVYGLA + NP AI++LY IK R P+ Sbjct: 26 LIAITDGSAIRQAANLLESGQVIALPTDTVYGLACSANNPAAIQKLYAIKGRHEQKPVAI 85 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC- 121 V+D ++ D L L + PG +T+V+ D +P ++ R+P Sbjct: 86 CVADFDDLRYWGQADHLPDALLRQLLPGAVTIVVRKSLHLD-NPFLNPGIEKIGIRIPDF 144 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI----SKIGLE 177 F + + + +P+A+ SAN+S S NV + + + DGG + Sbjct: 145 KFIRDVSRAFRYPIALTSANKSACQSTLNVHE--FQCLWSSLGAVFDGGQLGQSDEQRAA 202 Query: 178 STIVNVQCEKKVRILRPG 195 ST++++ + +++R G Sbjct: 203 STVIDLSEDGSYQLIRAG 220 >gi|261349624|ref|ZP_05975041.1| Sua5/YciO/YrdC/YwlC family protein [Methanobrevibacter smithii DSM 2374] gi|288861582|gb|EFC93880.1| Sua5/YciO/YrdC/YwlC family protein [Methanobrevibacter smithii DSM 2374] Length = 193 Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats. Identities = 53/198 (26%), Positives = 87/198 (43%), Gaps = 10/198 (5%) Query: 1 MQIMSIT----DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56 M+I+ D + +A + L G I PT+TVYGL + N A++R+Y IKKR Sbjct: 1 MKILKTNQNKVDKKVIDEAVKVLADGGVILYPTDTVYGLGANIFNRKAVKRVYNIKKRSY 60 Query: 57 MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 + P+ VS + + L+ + PGP T +L H T+ Sbjct: 61 LKPISLLVSSKDAIPLVSRASVNQLNFMDKYLPGPYTFILKKSKIVPRH--LTSGSANVG 118 Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 RVP L + + P+ SAN S + + + + + E+ L+ID G K Sbjct: 119 IRVPESEIACNLAKLF--PITTTSANISSE-NTLDTPEEILEQLGCEVDLVIDVGPLKSK 175 Query: 176 LESTIVNVQCEKKVRILR 193 STI+++ E+ + + R Sbjct: 176 NPSTIIDLTAEEPIFVKR 193 >gi|15641191|ref|NP_230823.1| hypothetical protein VC1178 [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587790|ref|ZP_01677549.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|121728251|ref|ZP_01681284.1| conserved hypothetical protein [Vibrio cholerae V52] gi|153215328|ref|ZP_01949941.1| conserved hypothetical protein [Vibrio cholerae 1587] gi|153819097|ref|ZP_01971764.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|153823502|ref|ZP_01976169.1| conserved hypothetical protein [Vibrio cholerae B33] gi|153826680|ref|ZP_01979347.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|153829624|ref|ZP_01982291.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|183179583|ref|ZP_02957794.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|227081350|ref|YP_002809901.1| hypothetical protein VCM66_1133 [Vibrio cholerae M66-2] gi|229505228|ref|ZP_04394738.1| hypothetical protein VCF_000436 [Vibrio cholerae BX 330286] gi|229511102|ref|ZP_04400581.1| hypothetical protein VCE_002509 [Vibrio cholerae B33] gi|229515559|ref|ZP_04405018.1| hypothetical protein VCB_003217 [Vibrio cholerae TMA 21] gi|229518221|ref|ZP_04407665.1| hypothetical protein VCC_002245 [Vibrio cholerae RC9] gi|229529734|ref|ZP_04419124.1| hypothetical protein VCG_002831 [Vibrio cholerae 12129(1)] gi|229608247|ref|YP_002878895.1| hypothetical protein VCD_003165 [Vibrio cholerae MJ-1236] gi|254226704|ref|ZP_04920281.1| conserved hypothetical protein [Vibrio cholerae V51] gi|254291997|ref|ZP_04962776.1| conserved hypothetical protein [Vibrio cholerae AM-19226] gi|254848304|ref|ZP_05237654.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|255745588|ref|ZP_05419536.1| YrdC family protein [Vibrio cholera CIRS 101] gi|262158339|ref|ZP_06029455.1| YrdC family protein [Vibrio cholerae INDRE 91/1] gi|262169497|ref|ZP_06037189.1| YrdC family protein [Vibrio cholerae RC27] gi|262191634|ref|ZP_06049812.1| YrdC family protein [Vibrio cholerae CT 5369-93] gi|297578778|ref|ZP_06940706.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|298498720|ref|ZP_07008527.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio cholerae MAK 757] gi|9655654|gb|AAF94337.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547954|gb|EAX58035.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|121629502|gb|EAX61928.1| conserved hypothetical protein [Vibrio cholerae V52] gi|124114771|gb|EAY33591.1| conserved hypothetical protein [Vibrio cholerae 1587] gi|125620765|gb|EAZ49122.1| conserved hypothetical protein [Vibrio cholerae V51] gi|126510380|gb|EAZ72974.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|126518970|gb|EAZ76193.1| conserved hypothetical protein [Vibrio cholerae B33] gi|148874900|gb|EDL73035.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|149739542|gb|EDM53770.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|150422074|gb|EDN14042.1| conserved hypothetical protein [Vibrio cholerae AM-19226] gi|183012994|gb|EDT88294.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|227009238|gb|ACP05450.1| conserved hypothetical protein [Vibrio cholerae M66-2] gi|229333508|gb|EEN98994.1| hypothetical protein VCG_002831 [Vibrio cholerae 12129(1)] gi|229344936|gb|EEO09910.1| hypothetical protein VCC_002245 [Vibrio cholerae RC9] gi|229347328|gb|EEO12288.1| hypothetical protein VCB_003217 [Vibrio cholerae TMA 21] gi|229351067|gb|EEO16008.1| hypothetical protein VCE_002509 [Vibrio cholerae B33] gi|229357451|gb|EEO22368.1| hypothetical protein VCF_000436 [Vibrio cholerae BX 330286] gi|229370902|gb|ACQ61325.1| hypothetical protein VCD_003165 [Vibrio cholerae MJ-1236] gi|254844009|gb|EET22423.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|255736663|gb|EET92060.1| YrdC family protein [Vibrio cholera CIRS 101] gi|262022310|gb|EEY41019.1| YrdC family protein [Vibrio cholerae RC27] gi|262029780|gb|EEY48428.1| YrdC family protein [Vibrio cholerae INDRE 91/1] gi|262032476|gb|EEY51036.1| YrdC family protein [Vibrio cholerae CT 5369-93] gi|297536372|gb|EFH75205.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|297543053|gb|EFH79103.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio cholerae MAK 757] gi|327483879|gb|AEA78286.1| YciO family [Vibrio cholerae LMA3894-4] Length = 206 Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats. Identities = 40/189 (21%), Positives = 73/189 (38%), Gaps = 4/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A + G + PT++ Y L N + R+ +I++ + D+S Sbjct: 14 TRLINQAVAIIRNGGVVVYPTDSGYALGCQLENKHGMERICQIRRLDDKHNFTLLCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD + L K PGP T + L KT RVP L Sbjct: 74 ELSLYARVDNTAFRLLKNNTPGPYTFIFKGTKEVP-RRLMNEKRKTIGIRVPNNKIALDL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL S G + + + + +I++GG +T+++ + Sbjct: 133 LEALGEPLMSTSLILPGNDFTESDPEEIRDRLEHAVDVILNGGYLGQ-QPTTVIDF-SDD 190 Query: 188 KVRILRPGG 196 +V + R G Sbjct: 191 EVVVARVGA 199 >gi|332671311|ref|YP_004454319.1| Sua5/YciO/YrdC/YwlC family protein [Cellulomonas fimi ATCC 484] gi|332340349|gb|AEE46932.1| Sua5/YciO/YrdC/YwlC family protein [Cellulomonas fimi ATCC 484] Length = 222 Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats. Identities = 56/206 (27%), Positives = 97/206 (47%), Gaps = 9/206 (4%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 +I S +D + A+ +A + G + +PT+TVYG+ D+ P A++ L + K R Sbjct: 4 RIRSASDPSTWGPAIDEAVAAVSRGALVVLPTDTVYGIGADAFTPPAVQALLDAKGRGRQ 63 Query: 58 NPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 P + D+ + A V + LA+ FWPG LTL++ + T T Sbjct: 64 MPPPVLIPDVRTLDGLATDVPDAARALAEAFWPGGLTLIVHAQPSLAWDLGETNG--TVA 121 Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 RVP T + P+A+ SANR+G + + + + + + +D G + + Sbjct: 122 LRVPDHPTALALLRRTGPMAVSSANRTGSPAAVTAQDA-HAQLGDSVAVYLDAGDAPGQV 180 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETL 202 STIV+ + +R++R G L +E L Sbjct: 181 ASTIVDATGD-VLRLVRAGALTLEQL 205 >gi|149012961|ref|ZP_01833850.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae SP19-BS75] gi|303255578|ref|ZP_07341629.1| hypothetical protein CGSSpBS455_08777 [Streptococcus pneumoniae BS455] gi|147763114|gb|EDK70055.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae SP19-BS75] gi|301801856|emb|CBW34574.1| conserved hypothetical protein [Streptococcus pneumoniae INV200] gi|302597434|gb|EFL64529.1| hypothetical protein CGSSpBS455_08777 [Streptococcus pneumoniae BS455] Length = 200 Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats. Identities = 61/197 (30%), Positives = 102/197 (51%), Gaps = 8/197 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + L+ G + +PTETVYGL + + A+ +Y++K+RP L +++ + Sbjct: 2 IDRIRQELENGGAVVLPTETVYGLFAKALDEKAVDHVYQLKRRPRDKALNLNIASFEDIL 61 Query: 72 KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P L L + F PGPLT++L+ + + ++L T FR+P T LI Sbjct: 62 HFSKNQPTYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIR 119 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL PSAN SGQ S + IL + + L D ++ G +STIV++ +K V Sbjct: 120 ETG-PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGDK-V 175 Query: 190 RILRPGGLEIETLKRAI 206 +ILR G ++ E + + Sbjct: 176 KILRQGAIKREDILARL 192 >gi|284032940|ref|YP_003382871.1| Sua5/YciO/YrdC/YwlC family protein [Kribbella flavida DSM 17836] gi|283812233|gb|ADB34072.1| Sua5/YciO/YrdC/YwlC family protein [Kribbella flavida DSM 17836] Length = 295 Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats. Identities = 59/214 (27%), Positives = 101/214 (47%), Gaps = 8/214 (3%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 A R A + ++AG + +PT+TVYGLA D+ A++RL + K R P +S + + Sbjct: 26 AYRAAVDAIEAGDLVVLPTDTVYGLAADAFKADAVQRLLDAKGRGRDMPPPVLISVVESL 85 Query: 71 KKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129 A+ P + L + FWPG LT++ + + T RVP + + Sbjct: 86 DALATDVPEAGRKLCEEFWPGALTVICHAQGS--LMWDLGDTHGTVALRVPDHENTRELL 143 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 + PLA+ SANRSGQ + +V + + + +DGG G STIV++ + Sbjct: 144 SRTGPLAVSSANRSGQPAALDVYDA-EEQLADSVAVYLDGGAVSGGEPSTIVDLTGDVP- 201 Query: 190 RILRPGGLEIETLKRAI---SVELEYCVDETSTP 220 ++R G L + +++ + + +LE P Sbjct: 202 HVVRIGALSMAQIRKVVPEATTDLEPAEKPAEEP 235 >gi|189485673|ref|YP_001956614.1| Sua5-related translation factor [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287632|dbj|BAG14153.1| Sua5-related translation factor [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 202 Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats. Identities = 62/204 (30%), Positives = 103/204 (50%), Gaps = 7/204 (3%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 +S D A +K E + G +PT+TVYG AVD+ N A + +Y+IK R I Sbjct: 5 ISSRDKMAYKKVAEVIRNGGIAIVPTDTVYGFAVDAFNIEAQKVVYKIKGRSHKKSFILM 64 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 V DI ++ + +L +AK FWPG LTL+L TT++ + + K R+P Sbjct: 65 VPDIESIRILVEIPEKALKIAKRFWPGQLTLILP---TTEMGKILSGGKKDLGVRIPDSK 121 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 F KL++ G P+ S N S + S N+ L + + + +DGG + EST+++ Sbjct: 122 FMLKLLKEMGSPVFTTSVNMSNKKSAKNIDETLR--FDEMVDIAVDGGQCRFSFESTVID 179 Query: 183 VQCEKKVRILRPGGLEIETLKRAI 206 + + ++R G L+ + + + I Sbjct: 180 M-VKFPYMVVRRGCLDTDKILKCI 202 >gi|292654433|ref|YP_003534330.1| Sua5/YciO/YrdC/YwlC family protein [Haloferax volcanii DS2] gi|291371068|gb|ADE03295.1| Sua5/YciO/YrdC/YwlC family protein [Haloferax volcanii DS2] Length = 199 Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats. Identities = 57/206 (27%), Positives = 97/206 (47%), Gaps = 9/206 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S+ +++A + G + PTETVYG+ D+ N A+ R+++IK R NPL D+ Sbjct: 2 SDDVQRAAAAIRRGEAVVYPTETVYGMGADATNADAVERVFDIKGRDRDNPLSAGFPDVD 61 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + VD + F PGP+T+V++ + + A R+P L Sbjct: 62 AALELVEVDDREEAFMRRFLPGPVTVVVERRDS--LPDALVAGKDRIGVRIPDHELALAL 119 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 G P+ SANRSG SIT+ LS I + + +++DGG + G EST+V+ Sbjct: 120 FRASGTPVTATSANRSGTGSITHPSQ-LSDEIREAVAVVLDGGTTP-GTESTVVD---PG 174 Query: 188 KVRILRPGGLEIETLKRAISVELEYC 213 + + R G + + ++ + + Sbjct: 175 RGVVHRRGAM-ADDIEAWLDEHDDDA 199 >gi|242036585|ref|XP_002465687.1| hypothetical protein SORBIDRAFT_01g043750 [Sorghum bicolor] gi|241919541|gb|EER92685.1| hypothetical protein SORBIDRAFT_01g043750 [Sorghum bicolor] Length = 275 Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats. Identities = 66/195 (33%), Positives = 97/195 (49%), Gaps = 4/195 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + KA + ++ G IA+PT+T+YG A D+ + A+ R+YEIK R PL V+D+S Sbjct: 70 KDHVLKATDAINRGEVIAVPTDTIYGFACDACSAGAVNRIYEIKGRIQTRPLAICVADVS 129 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 + + A VD L L PGP+T+VL + + L + RVP F + + Sbjct: 130 DISRFALVDHLPHGLLDSLLPGPVTVVLKRGENSILERSLNPGLDSIGVRVPDLDFIRSI 189 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCE 186 G LA+ SAN SGQ S +VK + + DGG+ G STIV++ Sbjct: 190 ARGAGSALALTSANLSGQPSSVSVKD--FEGLWPHCSCVFDGGVLPSGRAGSTIVDLITP 247 Query: 187 KKVRILRPGGLEIET 201 +ILR G ET Sbjct: 248 GVYKILRDGSSRKET 262 >gi|260598146|ref|YP_003210717.1| hypothetical protein CTU_23540 [Cronobacter turicensis z3032] gi|260217323|emb|CBA31309.1| Uncharacterized protein yciO [Cronobacter turicensis z3032] Length = 206 Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats. Identities = 45/188 (23%), Positives = 76/188 (40%), Gaps = 4/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E + G I PT++ Y L + A+ R+ I+ P + D+S Sbjct: 14 PRLIKQAVEIVRKGGVIVYPTDSGYALGCKLEDKGAMERICRIRDLPDGHNFTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + ++ VD ++ L K PG T +L L KT RVP L Sbjct: 74 ELSTYSYVDNVAFRLIKNNTPGNYTFILKGTKEVP-RRLLQEKRKTIGLRVPSNPIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E P+ S G + + + K++ LII GG +T+V++ + Sbjct: 133 LEALDEPMLSTSLMLPGSDFTESDPDEIKDRLEKQVDLIIHGGYLGQ-QPTTVVDLTDDA 191 Query: 188 KVRILRPG 195 V +LR G Sbjct: 192 PV-VLREG 198 >gi|254381732|ref|ZP_04997096.1| translation factor SUA5 [Streptomyces sp. Mg1] gi|194340641|gb|EDX21607.1| translation factor SUA5 [Streptomyces sp. Mg1] Length = 214 Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats. Identities = 52/198 (26%), Positives = 86/198 (43%), Gaps = 5/198 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + LR+A + + G + +PT+TVYG+ D+ +P A+ R+ K R P V Sbjct: 14 AEGLREAADAVRRGELVVLPTDTVYGVGADAFSPDAVARVLRAKGRGRQMPSPVLVGSPD 73 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 + + + L FWPG LTLV + I T R+P Sbjct: 74 ALDGLVIDLSVQARELIDAFWPGGLTLVARHEPS--IKWDLGETHGTVAIRMPAHPVAIS 131 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + PLA+ SAN +G+ S + L + + + + +D G + + S+IV+V + Sbjct: 132 LLDQTGPLAVSSANLTGRPSPQDCDAAL-AMLGDTVAVYLDAGPTPADVPSSIVDVTAKT 190 Query: 188 KVRILRPGGLEIETLKRA 205 V +LR G L L+ Sbjct: 191 PV-LLREGALSAARLREV 207 >gi|284036531|ref|YP_003386461.1| Sua5/YciO/YrdC/YwlC family protein [Spirosoma linguale DSM 74] gi|283815824|gb|ADB37662.1| Sua5/YciO/YrdC/YwlC family protein [Spirosoma linguale DSM 74] Length = 206 Score = 173 bits (440), Expect = 2e-41, Method: Composition-based stats. Identities = 51/191 (26%), Positives = 87/191 (45%), Gaps = 7/191 (3%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSD 66 D + + L G I PT+T+YG+ D N A+ R+ IK +PA N D Sbjct: 14 DPRRIEHIVKALRDGAVIIYPTDTIYGMGCDIHNTRAVERVARIKGIKPAKNDFSFICYD 73 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 +S + +A V + L K PGP T +L+ +T + + +N KT RVP + Sbjct: 74 LSHIADYARVGNQAFKLMKKVLPGPFTFILE--ATGSVPKILNSNKKTVGIRVPDNDIPR 131 Query: 126 KLIETYGHPLAIPSANRSGQIS-ITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 +++ G+P+ S +I + ++ ++ ++IDGG + STIV+ Sbjct: 132 QIVHELGNPIITTSIRDEDEIIEYSTDPELIFEKFQNQVDMVIDGGYGG-NVASTIVDAT 190 Query: 185 CEKKVRILRPG 195 + I+R G Sbjct: 191 DDN-FSIIRQG 200 >gi|153835312|ref|ZP_01987979.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio harveyi HY01] gi|156975029|ref|YP_001445936.1| hypothetical protein VIBHAR_02755 [Vibrio harveyi ATCC BAA-1116] gi|148868177|gb|EDL67330.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio harveyi HY01] gi|156526623|gb|ABU71709.1| hypothetical protein VIBHAR_02755 [Vibrio harveyi ATCC BAA-1116] Length = 206 Score = 173 bits (440), Expect = 3e-41, Method: Composition-based stats. Identities = 39/182 (21%), Positives = 71/182 (39%), Gaps = 3/182 (1%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A + G + PT++ Y L N A+ R+ +I++ + D+S Sbjct: 14 ARLINQAVAIIRNGGVVVYPTDSGYALGCQLENKQALERICQIRRLDDKHNFTLLCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD + L K PGP T + L A KT RVP L Sbjct: 74 ELSLYARVDNSAFRLLKNNTPGPYTFIFKGTKEVP-RRLMNAKRKTIGIRVPDNRIALDL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G P+ S G + + + + +I++GG +T+++ + Sbjct: 133 LEALGEPMMSTSLILPGSDVTESDPEDIRDKLEHAVDVILNGGYLGE-QPTTVIDFSEGE 191 Query: 188 KV 189 V Sbjct: 192 SV 193 >gi|113460885|ref|YP_718952.1| translation factor SUA5 [Haemophilus somnus 129PT] gi|170717433|ref|YP_001784533.1| Sua5/YciO/YrdC/YwlC family protein [Haemophilus somnus 2336] gi|112822928|gb|ABI25017.1| translation factor SUA5 [Haemophilus somnus 129PT] gi|168825562|gb|ACA30933.1| Sua5/YciO/YrdC/YwlC family protein [Haemophilus somnus 2336] Length = 207 Score = 173 bits (440), Expect = 3e-41, Method: Composition-based stats. Identities = 50/193 (25%), Positives = 84/193 (43%), Gaps = 5/193 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S + +A E L G I PT++ Y L + A+ R+ +I++ P + SD+S Sbjct: 14 SRLINQAVEILRQGGVIVYPTDSGYALGCMIGDKHAMDRIVKIRQLPEGHNFTLVCSDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + ++ V+ L K PG T +L L T+ KT RVP L Sbjct: 74 ELSTYSVVNNSVYRLIKNNTPGRYTFILSATKELP-RRLMTSKRKTIGIRVPDNQIALDL 132 Query: 128 IETYGHPLAIPSANRSGQISIT-NVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 +++ G P+ S G+ T + + + ++ LII GG +T+V++ + Sbjct: 133 LKSLGEPILSCSLMLPGEEYTTQSDPEEIRDRLEHQVDLIIHGGYLSQ-QPTTVVDLTED 191 Query: 187 KKVRILRPGGLEI 199 V ILR G +I Sbjct: 192 NPV-ILREGSGDI 203 >gi|325689726|gb|EGD31730.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK115] Length = 196 Score = 173 bits (440), Expect = 3e-41, Method: Composition-based stats. Identities = 65/193 (33%), Positives = 103/193 (53%), Gaps = 8/193 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + K + L AG + +PTETVYGL + N A+ R+YE+K+RP+ L +V+ + + Sbjct: 1 MDKIEKNLAAGGAVVLPTETVYGLFAQALNEEAVERVYELKRRPSDKALNLNVASLEEIY 60 Query: 72 KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P L L + F PGPLT++L + + + ++T FR+P T LI Sbjct: 61 NFSKNRPCYLDQLYQAFLPGPLTIILQ--ANDRVPAWINSGMETVGFRIPNHPVTLDLIR 118 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 YG PL PSAN SG+ S T+ + I+ +E+ + D G +STI+++ EK + Sbjct: 119 KYG-PLIGPSANLSGKASGTSFQQIMMD-FQEEVSGVEDDDF-LTGQDSTILDLSGEKAL 175 Query: 190 RILRPGGLEIETL 202 ILR G + E + Sbjct: 176 -ILRQGAITREDI 187 >gi|163803031|ref|ZP_02196917.1| putative translation factor [Vibrio sp. AND4] gi|159173205|gb|EDP58034.1| putative translation factor [Vibrio sp. AND4] Length = 206 Score = 173 bits (440), Expect = 3e-41, Method: Composition-based stats. Identities = 41/196 (20%), Positives = 77/196 (39%), Gaps = 4/196 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A + G + PT++ Y L N A+ R+ +I++ + D+S Sbjct: 14 ARLINQAVAIIRNGGVVVYPTDSGYALGCQLENKQALERICQIRRLDDKHNFTLLCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD + L K PGP T + L A KT RVP L Sbjct: 74 ELSLYARVDNSAFRLLKNNTPGPYTFIFKGTKEVP-RRLMNAKRKTIGIRVPDNRIALDL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G P+ S G + + + + +I++GG +T+++ E Sbjct: 133 LEALGEPMMSTSLILPGSDVTESDPEDIRDKLEHAVDVILNGGYLGE-QPTTVIDF-SEG 190 Query: 188 KVRILRPGGLEIETLK 203 + + R G + + + Sbjct: 191 EAVVARVGSGDPASFE 206 >gi|325696483|gb|EGD38373.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK160] Length = 196 Score = 173 bits (440), Expect = 3e-41, Method: Composition-based stats. Identities = 64/193 (33%), Positives = 102/193 (52%), Gaps = 8/193 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + K + L AG + +PTETVYGL + N A+ R+YE+K+RP L +V + + Sbjct: 1 MDKIEKTLAAGGAVVLPTETVYGLFAQALNQEAVERVYELKRRPRDKALNLNVGSLEEIY 60 Query: 72 KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P L L + F PGPLT++L + + + ++T FR+P T LI Sbjct: 61 DFSKNQPCYLDQLYQAFLPGPLTIILQ--ANDRVPAWINSGMETVGFRIPNHPVTLDLIR 118 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 YG PL PSAN SG+ S T+ + I+ +++ + D + G +STI+++ EK + Sbjct: 119 KYG-PLIGPSANLSGKASGTSFQQIMMD-FQEQVSGVEDDA-ALTGQDSTILDLSGEKAL 175 Query: 190 RILRPGGLEIETL 202 ILR G + E + Sbjct: 176 -ILRQGAITREDI 187 >gi|167586772|ref|ZP_02379160.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia ubonensis Bu] Length = 210 Score = 173 bits (440), Expect = 3e-41, Method: Composition-based stats. Identities = 51/193 (26%), Positives = 87/193 (45%), Gaps = 4/193 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E ++ G IA+PT++ Y LA + A+ R+ I+ L V D+S Sbjct: 14 PRLIKQAVEIVNKGGVIAMPTDSSYALACHLDDKDAVERVRRIRGLDDRQHLSLLVRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + A VD L K PGP +L LS + KT RVP T L Sbjct: 74 ELANFAMVDNRQYRLIKSVTPGPYVFILQATKEVP-RRLSHPSRKTIGLRVPEHAITLAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E+ G PL + + N + + + K++ L+IDGG ST++++ ++ Sbjct: 133 LESLGQPLLGTTLILPPEEEPLNDPEDIRARLEKQVDLVIDGGACPR-EPSTVIDLTADE 191 Query: 188 KVRILRPGGLEIE 200 +++R G +E Sbjct: 192 P-QLVRAGRGPLE 203 >gi|315634118|ref|ZP_07889407.1| Sua5/YciO/YrdC/YwlC family protein [Aggregatibacter segnis ATCC 33393] gi|315477368|gb|EFU68111.1| Sua5/YciO/YrdC/YwlC family protein [Aggregatibacter segnis ATCC 33393] Length = 207 Score = 173 bits (440), Expect = 3e-41, Method: Composition-based stats. Identities = 51/191 (26%), Positives = 84/191 (43%), Gaps = 7/191 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E L G I PT++ Y L + A+ R+ +I++ P + SD+S + Sbjct: 17 INQAVEILRNGGVIVYPTDSGYALGCMIGDKHAMDRIVQIRQLPEGHNFTLVCSDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 ++ V + L K PG T +L L T+ KT RVP L++ Sbjct: 77 NYSLVTNSAYRLIKNNTPGRYTFILTATKELP-RRLMTSKRKTIGIRVPDNQIALDLLKA 135 Query: 131 YGHPLAIPSANRSGQISIT-NVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKK 188 G P+ S + IT + + + ++ LII GG +G E +T+V++ E Sbjct: 136 LGEPILSCSLMLPNEEHITQSDPEEIRDRLEHQVDLIIHGGY--LGQEPTTVVDLTTETP 193 Query: 189 VRILRPGGLEI 199 V ILR G + Sbjct: 194 V-ILREGSGSV 203 >gi|226500320|ref|NP_001148954.1| ischemia/reperfusion inducible protein [Zea mays] gi|195623606|gb|ACG33633.1| ischemia/reperfusion inducible protein [Zea mays] Length = 275 Score = 173 bits (440), Expect = 3e-41, Method: Composition-based stats. Identities = 66/195 (33%), Positives = 96/195 (49%), Gaps = 4/195 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + KA + ++ G IA+PT+T+YG A D+ + A+ R+YEIK R PL V D+S Sbjct: 70 KDHVLKATDAINRGEVIAVPTDTIYGFACDACSAGAVNRIYEIKGRIQTRPLAICVGDVS 129 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 + + A VD L L PGP+T+VL + + L + RVP F + + Sbjct: 130 DISRFALVDHLPHGLLDSLLPGPVTIVLKRGENSILERSLNPGLDSIGVRVPDLDFIRSI 189 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCE 186 + G LA+ SAN SGQ S VK + + DGG+ G STIV++ Sbjct: 190 VRGTGSALALTSANLSGQPSSVCVKD--FEGLWPHCSYVFDGGVLPSGRAGSTIVDLITP 247 Query: 187 KKVRILRPGGLEIET 201 +ILR G ET Sbjct: 248 GVYKILRDGSSRKET 262 >gi|182683970|ref|YP_001835717.1| Sua5/YciO/YrdC family protein [Streptococcus pneumoniae CGSP14] gi|182629304|gb|ACB90252.1| Sua5/YciO/YrdC family protein [Streptococcus pneumoniae CGSP14] Length = 209 Score = 173 bits (440), Expect = 3e-41, Method: Composition-based stats. Identities = 62/197 (31%), Positives = 102/197 (51%), Gaps = 8/197 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + K + L+ G + +PTETVYGL + + A+ +Y++K+RP L +++ + Sbjct: 11 MDKIRQELENGGAVVLPTETVYGLFAKALDEKAVDHVYQLKRRPRDKALNLNIASFEDIL 70 Query: 72 KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P L L + F PGPLT++L+ + + ++L T FR+P T LI Sbjct: 71 HFSKNQPTYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIR 128 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL PSAN SGQ S + IL + + L D ++ G +STIV++ +K V Sbjct: 129 ETG-PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGDK-V 184 Query: 190 RILRPGGLEIETLKRAI 206 +ILR G ++ E + + Sbjct: 185 KILRQGAIKREDILARL 201 >gi|125717979|ref|YP_001035112.1| hypothetical protein SSA_1154 [Streptococcus sanguinis SK36] gi|125497896|gb|ABN44562.1| Conserved hypothetical protein [Streptococcus sanguinis SK36] Length = 196 Score = 173 bits (440), Expect = 3e-41, Method: Composition-based stats. Identities = 68/193 (35%), Positives = 103/193 (53%), Gaps = 8/193 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + K + L AG + +PTETVYGL + N A+ R+YE+K+RP L +V+ I + Sbjct: 1 MDKIEKTLVAGGAVVLPTETVYGLFAQALNEEAVERVYELKRRPRDKALNLNVASIEEIY 60 Query: 72 KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129 + P L L + F PGPLT++L + + + ++T FR+P T LI Sbjct: 61 AFSKNQPSYLKQLYQAFLPGPLTIILQ--ANDRVPTWINSGMETVGFRIPKHPVTLDLIR 118 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 YG PL PSAN SG+ S T+ + I+ +EI + D S G +STI+++ EK + Sbjct: 119 KYG-PLIGPSANLSGKASGTSFQQIMMD-FQEEISGVEDDA-SLTGQDSTILDLSGEKAL 175 Query: 190 RILRPGGLEIETL 202 ILR G + E + Sbjct: 176 -ILRQGAITREYI 187 >gi|167570496|ref|ZP_02363370.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia oklahomensis C6786] Length = 209 Score = 173 bits (440), Expect = 3e-41, Method: Composition-based stats. Identities = 52/193 (26%), Positives = 84/193 (43%), Gaps = 4/193 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E + G IA+PT++ Y LA + A+ R+ I+ L V D+S Sbjct: 14 PRLVKQAAEIVRGGGVIALPTDSSYALACHLDDKDAVERVRRIRGLDEKQHLSLLVRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + A VD L K PGP +L LS + KT RVP T L Sbjct: 74 ELATFAMVDNRQYRLIKSVTPGPYVFILQATKEVP-RRLSHPSRKTIGLRVPAHAITLAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL + S N + + + K+ L+IDGG ST++++ ++ Sbjct: 133 LEALGQPLLGTTLILSPDDEPLNDPEEIRTRLEKQADLVIDGGACPR-EPSTVIDLTGDE 191 Query: 188 KVRILRPGGLEIE 200 +++R G +E Sbjct: 192 P-QLVRAGRGPLE 203 >gi|296138965|ref|YP_003646208.1| Sua5/YciO/YrdC/YwlC family protein [Tsukamurella paurometabola DSM 20162] gi|296027099|gb|ADG77869.1| Sua5/YciO/YrdC/YwlC family protein [Tsukamurella paurometabola DSM 20162] Length = 216 Score = 173 bits (440), Expect = 3e-41, Method: Composition-based stats. Identities = 47/192 (24%), Positives = 85/192 (44%), Gaps = 5/192 (2%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-VD 77 L G + +PT+T+YG+ D+ + A+ L K R P+ V + S V Sbjct: 24 LKGGHLVVMPTDTLYGIGCDAFDNRAVGDLLAAKHRGPDMPVGVLVGSWDTIDGLVSRVS 83 Query: 78 PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAI 137 P + L FWPG ++LV++ + + T T R+P + P+A+ Sbjct: 84 PAARELTHAFWPGAVSLVVEQAPSLAWNLGDT--RGTVMLRMPLHPVAIELLREVGPMAV 141 Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197 SAN SG+ + + + + +DGG ++ + STIV++ + R+LR G + Sbjct: 142 SSANVSGKPPAATMTDA-RDQLGDSVEVYLDGGPAEHAVASTIVDLSGPQP-RVLREGAV 199 Query: 198 EIETLKRAISVE 209 + + V+ Sbjct: 200 TSARIAEVLGVD 211 >gi|327460376|gb|EGF06713.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK1057] Length = 196 Score = 173 bits (440), Expect = 3e-41, Method: Composition-based stats. Identities = 65/193 (33%), Positives = 101/193 (52%), Gaps = 8/193 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + K L AG + +PTETVYGL + N A+ R+YE+K+RP L +++ + + Sbjct: 1 MDKIENTLAAGGAVVLPTETVYGLFAQALNQEAVERVYELKRRPRDKALNLNMASLEEIY 60 Query: 72 KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P L L + F PGPLT++L + + + ++T FR+P T LI Sbjct: 61 AFSKNQPTYLKQLYQAFLPGPLTIIL--HANDRVPTWINSGMETVGFRIPNHPVTLDLIR 118 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 YG PL PSAN SG+ S T+ + I+ EI + D + G +STI+++ EK + Sbjct: 119 KYG-PLIGPSANLSGKASGTSFQQIMMD-FQGEISGVEDDA-TLTGQDSTILDLSGEKAI 175 Query: 190 RILRPGGLEIETL 202 ILR G + E + Sbjct: 176 -ILRQGAITREDI 187 >gi|229520393|ref|ZP_04409818.1| hypothetical protein VIF_000914 [Vibrio cholerae TM 11079-80] gi|229342491|gb|EEO07484.1| hypothetical protein VIF_000914 [Vibrio cholerae TM 11079-80] Length = 206 Score = 173 bits (440), Expect = 3e-41, Method: Composition-based stats. Identities = 40/189 (21%), Positives = 73/189 (38%), Gaps = 4/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A + G + PT++ Y L N + R+ +I++ + D+S Sbjct: 14 TRLINQAVAIIRNGGVVVYPTDSGYALGCQLENKYGMERICQIRRLDDKHNFTLLCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD + L K PGP T + L KT RVP L Sbjct: 74 ELSLYARVDNTAFRLLKNNTPGPYTFIFKGTKEVP-RRLMNEKRKTIGIRVPNNKIALDL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL S G + + + + +I++GG +T+++ + Sbjct: 133 LEALGEPLMSTSLILPGNDFTESDPEEIRDRLEHAVDVILNGGYLGQ-QPTTVIDF-SDD 190 Query: 188 KVRILRPGG 196 +V + R G Sbjct: 191 EVVVARVGA 199 >gi|163755495|ref|ZP_02162614.1| translation factor [Kordia algicida OT-1] gi|161324408|gb|EDP95738.1| translation factor [Kordia algicida OT-1] Length = 207 Score = 173 bits (440), Expect = 3e-41, Method: Composition-based stats. Identities = 45/199 (22%), Positives = 83/199 (41%), Gaps = 9/199 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP-LICHVSD 66 + ++K + L G + PT+TVYGL D N A+ R+ IK +D Sbjct: 13 NPKEIKKVVDILRDGGLVIYPTDTVYGLGCDITNTKALERIARIKGIKLEKANFSFICND 72 Query: 67 ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124 +S + + +D + + K PGP T +L + P KT RVP Sbjct: 73 LSHISDYIRQIDTPTYKILKKALPGPYTFILPGNNNL---PKVFKKKKTVGIRVPDNNIA 129 Query: 125 KKLIETYGHPLAIPSANRSGQIS-ITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + +++ G+P+ S I T ++ + ++DGG + STI+++ Sbjct: 130 RTIVQELGNPIVSTSIYDEDDIIEYTTDPELILEKWENLVDAVVDGGYGD-NVASTIIDL 188 Query: 184 QCEKKVRILRPGGLEIETL 202 + ++R G +I+ + Sbjct: 189 SGYEP-EVIREGKGDIDII 206 >gi|22297687|ref|NP_680934.1| hypothetical protein tlr0143 [Thermosynechococcus elongatus BP-1] gi|22293864|dbj|BAC07696.1| tlr0143 [Thermosynechococcus elongatus BP-1] Length = 213 Score = 173 bits (440), Expect = 3e-41, Method: Composition-based stats. Identities = 47/199 (23%), Positives = 85/199 (42%), Gaps = 4/199 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 A+ + E L G + PT+TVY + D + A++R+ ++K+ P+ S +S Sbjct: 14 PRAIAQIVEALKEGAVMLYPTDTVYAIGCDMNHKGAVQRVRQLKQLSNDKPVTFLCSSLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLST-ANLKTACFRVPCGFT-KK 126 + ++A V + L + PGP T +L +T + L KT RVP + Sbjct: 74 NIAQYAYVSDSAYRLMRRLIPGPYTFLLP--ATKLVPRLVQNPKRKTTGIRVPDHVVSQA 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+ G+P+ SA + L + K + L+ID G S+I+++ E Sbjct: 132 LLTALGNPIISTSARLPDDETYYVNTADLFDAFDKRVDLMIDTGEPPTQQMSSILDLTVE 191 Query: 187 KKVRILRPGGLEIETLKRA 205 + + + G E + Sbjct: 192 PPLLVRKGRGWEALPAEMV 210 >gi|269103770|ref|ZP_06156467.1| YrdC family protein [Photobacterium damselae subsp. damselae CIP 102761] gi|268163668|gb|EEZ42164.1| YrdC family protein [Photobacterium damselae subsp. damselae CIP 102761] Length = 185 Score = 173 bits (440), Expect = 3e-41, Method: Composition-based stats. Identities = 45/185 (24%), Positives = 76/185 (41%), Gaps = 7/185 (3%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + + L G I PTE V+G+ D + A+ +L +K+RP LI +D Sbjct: 2 DNFAQVVAALQQGEVIGYPTEAVFGVGCDPDSEQAVHKLLALKQRPIEKGLILIAADYDQ 61 Query: 70 VKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + + L+ L K WPGP+T V+ + + T +T RV + Sbjct: 62 LLAYVDESQLTTNQLEQIKNSWPGPVTWVMPTKPS--VPKFLTGQFETIAVRVSDHPLVQ 119 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +L +G P+ SAN +GQ + + + + + I+ G + S I + Q Sbjct: 120 QLCRQFGKPITSTSANLTGQEPGRTYQDV-EAQLGHYLAAILQGEVGGRDNPSEIRDAQT 178 Query: 186 EKKVR 190 K R Sbjct: 179 GKVFR 183 >gi|78066874|ref|YP_369643.1| Sua5/YciO/YrdC/YwlC [Burkholderia sp. 383] gi|77967619|gb|ABB08999.1| Sua5/YciO/YrdC/YwlC [Burkholderia sp. 383] Length = 210 Score = 173 bits (440), Expect = 3e-41, Method: Composition-based stats. Identities = 51/193 (26%), Positives = 82/193 (42%), Gaps = 4/193 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E + G IA+PT++ Y LA + A+ R+ I+ L V D+S Sbjct: 14 PRLIKQAVEIVSKGGVIAMPTDSSYALACHLDDKDAVERVRRIRGLDEKQHLSLLVRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + A VD K PGP +L LS + KT RVP T L Sbjct: 74 ELANFAMVDNRQYRQIKSVTPGPYVFILQATKEVP-RRLSHPSRKTIGLRVPDHAITLAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E+ G PL + N + + K++ L+IDGG ST++++ E+ Sbjct: 133 LESLGQPLLGTTLILPPDDEPLNEPEEIRERLEKQVDLVIDGGACPR-EPSTVIDLTGEE 191 Query: 188 KVRILRPGGLEIE 200 ++R G +E Sbjct: 192 P-ELVRAGRGALE 203 >gi|332366921|gb|EGJ44662.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK1059] Length = 196 Score = 173 bits (440), Expect = 3e-41, Method: Composition-based stats. Identities = 65/193 (33%), Positives = 103/193 (53%), Gaps = 8/193 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + K + L AG + +PTETVYGL + N A+ R+YE+K+RP L +V+ + + Sbjct: 1 MDKIEKTLAAGGAVVLPTETVYGLFAQALNEEAVERVYELKRRPRDKALNLNVASLEEIY 60 Query: 72 KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129 + P L L + F PGPLT++L + + + ++T FR+P T LI Sbjct: 61 AFSKNPPSYLDQLYQAFLPGPLTIILQ--ANDQVPVWINSGMETVGFRIPKHPVTLDLIR 118 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 YG PL PSAN SG+ S T+ + I+ +E+ + D + G +STI+++ EK + Sbjct: 119 KYG-PLIGPSANLSGKASGTSFQQIMMD-FQEEVSGVEDDA-ALTGQDSTILDLSGEKAL 175 Query: 190 RILRPGGLEIETL 202 ILR G + E + Sbjct: 176 -ILRQGAITREDI 187 >gi|307709437|ref|ZP_07645894.1| yrdC domain protein [Streptococcus mitis SK564] gi|307619751|gb|EFN98870.1| yrdC domain protein [Streptococcus mitis SK564] Length = 199 Score = 173 bits (439), Expect = 3e-41, Method: Composition-based stats. Identities = 56/192 (29%), Positives = 96/192 (50%), Gaps = 6/192 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + L+ G + +PTETVYGL + + A+ +Y++K+RP L ++ + + Sbjct: 1 MDRIKQELENGGAVVLPTETVYGLFAKALDEKAVDHVYQLKRRPRDKALNLNIDSLEDIL 60 Query: 72 KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130 + P L L + F PGPLT++L+ + + + L T FR+P + Sbjct: 61 HFSKNQPTYLQKLVETFLPGPLTIILE--ANDRVPYWVNSGLATVGFRMPSHPITLDLIR 118 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 PL PSAN SGQ S + IL + L D ++ G +STI+++ +K V+ Sbjct: 119 VTGPLIGPSANISGQSSGVTFEQILKDFDQDVLGLEDDAFLT--GQDSTILDLSGDK-VK 175 Query: 191 ILRPGGLEIETL 202 ILR G ++ E + Sbjct: 176 ILRQGAIKREDI 187 >gi|296128917|ref|YP_003636167.1| Sua5/YciO/YrdC/YwlC family protein [Cellulomonas flavigena DSM 20109] gi|296020732|gb|ADG73968.1| Sua5/YciO/YrdC/YwlC family protein [Cellulomonas flavigena DSM 20109] Length = 236 Score = 173 bits (439), Expect = 3e-41, Method: Composition-based stats. Identities = 56/209 (26%), Positives = 100/209 (47%), Gaps = 9/209 (4%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 +I +TD A+ +A + G + +PT+TVYG+ D+ + A++ L + K R Sbjct: 5 RIKDVTDPATWGPAVDEAVHAVGRGELVVLPTDTVYGIGADAFDARAVQALLDAKGRGRQ 64 Query: 58 NPLICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 P + D+ + A+ P ++ LA+ FWPG LT++L + + T Sbjct: 65 MPPPVLIPDVRTLDGLATDVPDAVRALAETFWPGGLTVILRAQPS--LAWDLGETHGTVA 122 Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P + PLA+ SANR+G+ + T + + + +DGG + G+ Sbjct: 123 LRMPDHPAALALLRRTGPLAVSSANRTGRPAATTAA-EAHEQLGDAVAVYLDGGTAPGGV 181 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRA 205 STIV+ + +R++R G L++ TL Sbjct: 182 ASTIVDATGD-ALRVVRLGALDLATLATV 209 >gi|312172531|emb|CBX80787.1| Uncharacterized protein yciO [Erwinia amylovora ATCC BAA-2158] Length = 207 Score = 173 bits (439), Expect = 3e-41, Method: Composition-based stats. Identities = 45/196 (22%), Positives = 80/196 (40%), Gaps = 4/196 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E L+ G I PT++ Y L + +A+ R+ I++ + D+S Sbjct: 15 PRLIKQAVEMLNKGSVIVYPTDSGYALGCKLEDKSAMERICRIRQLDGNHNFTLMCRDLS 74 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD + L K PG T +L L + KT RVP L Sbjct: 75 ELSTYAYVDNTAFRLIKNNTPGNYTFILKATKEVP-RRLMSEKRKTIGLRVPSNPIALAL 133 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E P+ S G + + I K + LII GG +T++++ E Sbjct: 134 LEALNEPMMSTSLMLPGNDFTESDPEAIQDEIGKLVDLIIHGGFLGQ-QPTTVIDLT-EN 191 Query: 188 KVRILRPGGLEIETLK 203 ++R G +++ + Sbjct: 192 TPEVVREGVGDVQPFR 207 >gi|85712441|ref|ZP_01043490.1| Possible translation factor, Sua5/YciO/YrdC/YwlC family protein [Idiomarina baltica OS145] gi|85693719|gb|EAQ31668.1| Possible translation factor, Sua5/YciO/YrdC/YwlC family protein [Idiomarina baltica OS145] Length = 207 Score = 173 bits (439), Expect = 3e-41, Method: Composition-based stats. Identities = 43/205 (20%), Positives = 81/205 (39%), Gaps = 5/205 (2%) Query: 1 MQIMSITDS-NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 ++ + +++A + + G + PT++ Y + + A+ R+ +I+ + Sbjct: 5 FEVHPMNPQKRLIQQAVDIIRQGGIVVYPTDSGYAIGCQIGDKKAVDRICQIRDIDKEHN 64 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 D+S + +A VD + L K PGP T +L L KT RV Sbjct: 65 FTLMCRDLSELSTYARVDNDAFRLLKNNTPGPYTFILKGTKEVP-KRLLNPKRKTIGIRV 123 Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P L+E PL S + + + K + LI+DGG K + Sbjct: 124 PTNRIALALLEELNEPLMSTSLILGNNELAESDPETIREQLEKRVDLIVDGGH-KGEEPT 182 Query: 179 TIVNVQCEKKVRILRPGGLEIETLK 203 T+V++ V ++R G + + + Sbjct: 183 TVVDLSEGAPV-VIRGGSGDTQPFE 206 >gi|254427759|ref|ZP_05041466.1| Sua5/YciO/YrdC/YwlC family protein [Alcanivorax sp. DG881] gi|196193928|gb|EDX88887.1| Sua5/YciO/YrdC/YwlC family protein [Alcanivorax sp. DG881] Length = 182 Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats. Identities = 44/178 (24%), Positives = 81/178 (45%), Gaps = 4/178 (2%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A + + AG IA PTE+VYGL D N A+ +L IK+RP LI ++ + + Sbjct: 8 AAQIIQAGGVIAYPTESVYGLGCDPFNQDAVMQLLAIKQRPVSKGLILIGETLAQLAPYL 67 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133 ++ + WP P+T +++ + + + RVP ++L G Sbjct: 68 RLNDQQAARLQQQWPAPVTYLVE--ANEHLPAWVRGQHRKVAVRVPDHPLARQLCNLAGQ 125 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 P+ SAN SG+ + N + + ++ I+ G + STI++++ + +R Sbjct: 126 PIISTSANISGRPAACNRYQVAR-QLGDQLDFIVSGACDRASKPSTIIDLESGRILRP 182 >gi|54310611|ref|YP_131631.1| putative Sua5/YciO/YrdC family protein [Photobacterium profundum SS9] gi|46915054|emb|CAG21829.1| Putative Sua5/YciO/YrdC family protein [Photobacterium profundum SS9] Length = 192 Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats. Identities = 51/194 (26%), Positives = 87/194 (44%), Gaps = 8/194 (4%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I + D + L++ L +G IA PTE V+G+ D NP A+ +L +K+RP L Sbjct: 1 MVIYEV-DMDNLQQVVSALQSGEVIAYPTEGVFGVGCDPDNPQAVEKLLALKQRPIEKGL 59 Query: 61 ICHVSDISMVKKH---ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 I ++ ++ + A + L WPGP+T V+ + DI PL T + Sbjct: 60 ILIAANYQQLQPYIDDAQLSDLQKQKIFSTWPGPVTWVMPVKK--DISPLLTGKFTSIAV 117 Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 RV +KL +G P+ SAN +G V + + + + + I++G Sbjct: 118 RVSDHPLVQKLCHQFGKPITSTSANLTGLPPCKTVTEV-QNQLGEHLSAILEGETGGREN 176 Query: 177 ESTIVNVQCEKKVR 190 + I + + +R Sbjct: 177 PTEIRDAFSDTVLR 190 >gi|22125943|ref|NP_669366.1| hypothetical protein y2053 [Yersinia pestis KIM 10] gi|45441809|ref|NP_993348.1| hypothetical protein YP_2009 [Yersinia pestis biovar Microtus str. 91001] gi|51596460|ref|YP_070651.1| hypothetical protein YPTB2134 [Yersinia pseudotuberculosis IP 32953] gi|108807565|ref|YP_651481.1| hypothetical protein YPA_1570 [Yersinia pestis Antiqua] gi|108811841|ref|YP_647608.1| hypothetical protein YPN_1679 [Yersinia pestis Nepal516] gi|145598220|ref|YP_001162296.1| hypothetical protein YPDSF_0923 [Yersinia pestis Pestoides F] gi|149365869|ref|ZP_01887904.1| hypothetical protein YPE_1047 [Yersinia pestis CA88-4125] gi|153949288|ref|YP_001400904.1| hypothetical protein YpsIP31758_1929 [Yersinia pseudotuberculosis IP 31758] gi|165927411|ref|ZP_02223243.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165938161|ref|ZP_02226720.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis biovar Orientalis str. IP275] gi|166010763|ref|ZP_02231661.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166210525|ref|ZP_02236560.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167400845|ref|ZP_02306351.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420278|ref|ZP_02312031.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425046|ref|ZP_02316799.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167470516|ref|ZP_02335220.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis FV-1] gi|170024275|ref|YP_001720780.1| hypothetical protein YPK_2040 [Yersinia pseudotuberculosis YPIII] gi|186895509|ref|YP_001872621.1| hypothetical protein YPTS_2203 [Yersinia pseudotuberculosis PB1/+] gi|218929308|ref|YP_002347183.1| hypothetical protein YPO2212 [Yersinia pestis CO92] gi|229894896|ref|ZP_04510074.1| predicted RNA-binding protein [Yersinia pestis Pestoides A] gi|229897639|ref|ZP_04512795.1| predicted RNA-binding protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229898284|ref|ZP_04513431.1| predicted RNA-binding protein [Yersinia pestis biovar Orientalis str. India 195] gi|229902143|ref|ZP_04517264.1| predicted RNA-binding protein [Yersinia pestis Nepal516] gi|270490617|ref|ZP_06207691.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis KIM D27] gi|294503750|ref|YP_003567812.1| hypothetical protein YPZ3_1640 [Yersinia pestis Z176003] gi|21958883|gb|AAM85617.1|AE013807_11 hypothetical protein y2053 [Yersinia pestis KIM 10] gi|45436671|gb|AAS62225.1| Putative translation factor (SUA5) [Yersinia pestis biovar Microtus str. 91001] gi|51589742|emb|CAH21372.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP 32953] gi|108775489|gb|ABG18008.1| translation factor SUA5 [Yersinia pestis Nepal516] gi|108779478|gb|ABG13536.1| translation factor SUA5 [Yersinia pestis Antiqua] gi|115347919|emb|CAL20841.1| conserved hypothetical protein [Yersinia pestis CO92] gi|145209916|gb|ABP39323.1| translation factor SUA5 [Yersinia pestis Pestoides F] gi|149292282|gb|EDM42356.1| hypothetical protein YPE_1047 [Yersinia pestis CA88-4125] gi|152960783|gb|ABS48244.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pseudotuberculosis IP 31758] gi|165913822|gb|EDR32440.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis biovar Orientalis str. IP275] gi|165920677|gb|EDR37925.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165990465|gb|EDR42766.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166207705|gb|EDR52185.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis biovar Antiqua str. B42003004] gi|166961973|gb|EDR57994.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049698|gb|EDR61106.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056233|gb|EDR66011.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169750809|gb|ACA68327.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pseudotuberculosis YPIII] gi|186698535|gb|ACC89164.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pseudotuberculosis PB1/+] gi|229681039|gb|EEO77134.1| predicted RNA-binding protein [Yersinia pestis Nepal516] gi|229688574|gb|EEO80643.1| predicted RNA-binding protein [Yersinia pestis biovar Orientalis str. India 195] gi|229693976|gb|EEO84025.1| predicted RNA-binding protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701991|gb|EEO90012.1| predicted RNA-binding protein [Yersinia pestis Pestoides A] gi|262362130|gb|ACY58851.1| hypothetical protein YPD4_1944 [Yersinia pestis D106004] gi|262365459|gb|ACY62016.1| hypothetical protein YPD8_1331 [Yersinia pestis D182038] gi|270339121|gb|EFA49898.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis KIM D27] gi|294354209|gb|ADE64550.1| hypothetical protein YPZ3_1640 [Yersinia pestis Z176003] gi|320014877|gb|ADV98448.1| putative RNA-binding protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 206 Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats. Identities = 42/192 (21%), Positives = 78/192 (40%), Gaps = 4/192 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + + L G + PT++ Y L + TA+ R+ I++ + D+S Sbjct: 14 PRLINQCVDVLRKGGVVVYPTDSGYALGCRLEDKTAMERICRIRQLDGNHNFTLVCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD + L K PG T +L L KT RVP L Sbjct: 74 ELSTYAYVDNSAFRLIKNNTPGNYTFILKATKEVP-RRLMNDKRKTIGLRVPSNPIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ G PL + G + + ++ K++ LII GG S +T++++ + Sbjct: 133 LDALGEPLMSTTLMLPGNDFAESDPEEIKENLGKQVDLIIHGG-SLGQQPTTVIDLT-DS 190 Query: 188 KVRILRPGGLEI 199 ++R G ++ Sbjct: 191 APEVIREGAGDV 202 >gi|86147036|ref|ZP_01065353.1| Putative translation factor [Vibrio sp. MED222] gi|218709945|ref|YP_002417566.1| translation factor [Vibrio splendidus LGP32] gi|85835101|gb|EAQ53242.1| Putative translation factor [Vibrio sp. MED222] gi|218322964|emb|CAV19141.1| hypothetical translation factor [Vibrio splendidus LGP32] Length = 206 Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 76/189 (40%), Gaps = 3/189 (1%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A + G + PT++ Y L N A+ R+ +I++ + D+S Sbjct: 14 ARLITQAVAIIRNGGVVVYPTDSGYALGCQLENKQALERICKIRRIDDKHNFTLLCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD ++ L K PG T + L A KT RVP L Sbjct: 74 ELSLYARVDNVAFRLLKAHTPGAYTFIFKATKEVP-KRLMNAKRKTIGIRVPDNKIALDL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL S G + + + S+ + +I++GG +T+++ + Sbjct: 133 LEAMGEPLMSTSLILPGNETTESDPEEIRDSLEHAVDVILNGGYLGE-QPTTVIDFSDDD 191 Query: 188 KVRILRPGG 196 V + R G Sbjct: 192 AVVLRRGAG 200 >gi|313203740|ref|YP_004042397.1| translation factor sua5 [Paludibacter propionicigenes WB4] gi|312443056|gb|ADQ79412.1| translation factor SUA5 [Paludibacter propionicigenes WB4] Length = 201 Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats. Identities = 54/207 (26%), Positives = 98/207 (47%), Gaps = 16/207 (7%) Query: 3 IMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK---RP 55 ++ I D+N +R+ E L G I PT+ VY + N + + + ++K+ R Sbjct: 2 LIKIYDTNPNPIEIRRVVEVLRKGGIIIFPTDGVYAFGCNIFNASGVEFIAKLKEHDMRK 61 Query: 56 AMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115 A ICH ++S + ++A +D +S L K PGP T +L+ S P N KT Sbjct: 62 ANLSFICH--EMSQISEYAKMDDVSFKLMKRNLPGPFTFILNGSSKL---PKLFKNKKTV 116 Query: 116 CFRVP-CGFTKKLIETYGHPLAIPSANRSGQIS-ITNVKHILSSSICKEIPLIIDGGISK 173 R+P +++ G+PL S + + ++ ++ ++IDGG+ Sbjct: 117 GIRMPQNNIALEIVRELGNPLMTSSIFTDEKTTEYITDPELIEEKYGHQVDMVIDGGMGG 176 Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIE 200 + + STIV+ ++ V I+R G E++ Sbjct: 177 L-IHSTIVDCTEDEPV-IIRQGAGELQ 201 >gi|315222984|ref|ZP_07864863.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus anginosus F0211] gi|315187934|gb|EFU21670.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus anginosus F0211] Length = 196 Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats. Identities = 63/197 (31%), Positives = 101/197 (51%), Gaps = 8/197 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + K E L +G + +PTETVYGL + + A+ +Y++K RP L +VS + + Sbjct: 1 MDKIEEMLSSGGAVVLPTETVYGLFCKALDEQAVSHVYDLKGRPREKALNLNVSSLEEIY 60 Query: 72 KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIE 129 + + P L L + F PGPLT++L + + + +KT FRVP T LI Sbjct: 61 QFSKHQPQYLKKLYQAFLPGPLTIILQ--ANEQVPVWVNSGMKTIGFRVPSHPKTLDLIR 118 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 +G PL PSAN SG+ S N + I++ + + + D ++ G +STI+++ E Sbjct: 119 KFG-PLIGPSANLSGKSSGVNFQQIMTDFNYEVLGIEDDAFLT--GQDSTILDLSGE-TA 174 Query: 190 RILRPGGLEIETLKRAI 206 ILR G + E + I Sbjct: 175 YILRQGAVTCEEILAKI 191 >gi|266619533|ref|ZP_06112468.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium hathewayi DSM 13479] gi|288868944|gb|EFD01243.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium hathewayi DSM 13479] Length = 216 Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats. Identities = 53/200 (26%), Positives = 87/200 (43%), Gaps = 25/200 (12%) Query: 145 QISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKR 204 + S T H+ + +I +I+DGG IG+ESTI++V + V ILRPG + E Sbjct: 1 RPSPTTADHVW-QDMNGKIDMIVDGGPVGIGVESTIIDVSGQVPV-ILRPGAVTQEMAGA 58 Query: 205 AISVEL--------EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV------------N 244 + +E+ + + P++PGM HYAP++ + L Sbjct: 59 VLGMEIGLDPAITGDGPMKADVKPKAPGMKYKHYAPKADLTLVEGEPAEVARTINHLAKE 118 Query: 245 PREALIRFGNV---PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSS 301 +A R G + + + + +L + + A NL+ ++ DD A I S Sbjct: 119 KLQAGYRVGIICTDETRELYPEGMVRSLGLRAREETIAHNLYAVLREFDDLEADYIYSES 178 Query: 302 IPNHGLGIAINNRLERAAAP 321 LG AI NRL++AA Sbjct: 179 FSADHLGQAIMNRLKKAAGY 198 >gi|295095682|emb|CBK84772.1| Sua5/YciO/YrdC/YwlC family protein [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 206 Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats. Identities = 45/188 (23%), Positives = 77/188 (40%), Gaps = 4/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A E + G I PT++ Y L + ++ R+ I++ P + D+S Sbjct: 14 PRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKGSMERICRIRQLPDGHNFTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD ++ L K PG T +L L KT RVP + L Sbjct: 74 ELSTYAYVDNVAFRLIKNNTPGNYTFILKGTKEVP-RRLLQEKRKTIGMRVPSNPIAQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +ET G P+ S G + + + K + LII GG +T+V++ + Sbjct: 133 LETLGEPMLSTSLMLPGSEFTESDPEEIKDRLEKVVELIIHGGYLGQ-QPTTVVDLTEDA 191 Query: 188 KVRILRPG 195 ++R G Sbjct: 192 P-EVIREG 198 >gi|147674311|ref|YP_001216749.1| hypothetical protein VC0395_A0799 [Vibrio cholerae O395] gi|146316194|gb|ABQ20733.1| conserved hypothetical protein [Vibrio cholerae O395] gi|227013095|gb|ACP09305.1| conserved hypothetical protein [Vibrio cholerae O395] Length = 206 Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats. Identities = 40/189 (21%), Positives = 73/189 (38%), Gaps = 4/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A + G + PT++ Y L N + R+ +I++ + D+S Sbjct: 14 TRLINQAVAIIRNGGVVVYPTDSGYALGCQLENKHGMERICQIRRLDDKHNFTLLCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD + L K PGP T + L KT RVP L Sbjct: 74 ELSLYARVDNTAFRLLKNNTPGPYTFIFKGTKEVP-RRLMNEKRKTIGIRVPNNKIALDL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL S G + + + + +I++GG +T+++ + Sbjct: 133 LEVLGEPLMSTSLILPGNDFTESDPEEIRDRLEHAVDVILNGGYLGQ-QPTTVIDF-SDD 190 Query: 188 KVRILRPGG 196 +V + R G Sbjct: 191 EVVVARVGA 199 >gi|324994442|gb|EGC26355.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK678] Length = 196 Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats. Identities = 66/193 (34%), Positives = 102/193 (52%), Gaps = 8/193 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + K + L AG + +PTETVYGL + N A+ R+YE+K+RP L +V+ I + Sbjct: 1 MDKIEKTLVAGGAVVLPTETVYGLFAQALNEEAVERVYELKRRPRDKALNLNVASIEEIY 60 Query: 72 KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129 + P L L + F PGPLT++L + + + ++T FR+P T LI Sbjct: 61 AFSKNQPSYLKQLYQAFLPGPLTIILQ--ANDRVPAWINSGMETVGFRIPKHPVTLDLIR 118 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 YG PL PSAN SG+ S T+ + I+ +E+ + D G +STI+++ EK + Sbjct: 119 KYG-PLIGPSANLSGKASGTSFQQIMMD-FQEEVSGVEDDAY-LTGQDSTILDLSGEKAL 175 Query: 190 RILRPGGLEIETL 202 ILR G + E + Sbjct: 176 -ILRQGAITREDI 187 >gi|149374416|ref|ZP_01892190.1| hypothetical protein MDG893_10226 [Marinobacter algicola DG893] gi|149361119|gb|EDM49569.1| hypothetical protein MDG893_10226 [Marinobacter algicola DG893] Length = 207 Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats. Identities = 50/205 (24%), Positives = 81/205 (39%), Gaps = 5/205 (2%) Query: 1 MQIMSITDS-NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 QI T + +A + L G I PT++ Y + + A R+ I++ + Sbjct: 5 FQIHPETPQKRLINQAVDILRKGGVIVYPTDSAYAIGCHLGDKQAADRIKRIRRLDDKHN 64 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 D+S + A VD L K F PG T +LD S L KT RV Sbjct: 65 FTLMCRDLSDIGVFAKVDNTQYRLLKNFTPGAYTFILDATSEVP-RRLLHPKRKTIGMRV 123 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P + L+ G P+ + G + + ++ E+ LIIDGG + + Sbjct: 124 PDNAIVQALLAELGEPIMSSTLILPGDEDPMTDPYDIRETLEHELDLIIDGGFCGL-EAT 182 Query: 179 TIVNVQCEKKVRILRPGGLEIETLK 203 T+VN+ + + R G + E + Sbjct: 183 TVVNMTGDAP-EVTRVGKGDPEPFR 206 >gi|170724414|ref|YP_001758440.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella woodyi ATCC 51908] gi|212288229|sp|B1KCX0|RIMN_SHEWM RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|169809761|gb|ACA84345.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella woodyi ATCC 51908] Length = 185 Score = 172 bits (438), Expect = 4e-41, Method: Composition-based stats. Identities = 53/186 (28%), Positives = 83/186 (44%), Gaps = 7/186 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 A + + +++G +A PTE VYGL D N AI +L IKKRP LI SD Sbjct: 3 EQAPAEVKQVIESGGVVAYPTEAVYGLGCDPDNDAAITKLLAIKKRPWEKGLILVASDYQ 62 Query: 69 MVKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT- 124 + + L+ + WPGP T ++ + I L + + RV T Sbjct: 63 QLLPYIDDSQLTEEQRERVFSKWPGPFTFIMPIKPG--ISNLLCGSFNSLAVRVSDHPTI 120 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + + + G PL SAN SG+ + + IL + EI ++ G + + STI++ Sbjct: 121 QAICQQLGKPLVSTSANHSGEEPAMSHEEIL-AKFEGEIDALVAGSLGEQRKPSTIIDAI 179 Query: 185 CEKKVR 190 K +R Sbjct: 180 SGKILR 185 >gi|218779903|ref|YP_002431221.1| Sua5/YciO/YrdC/YwlC family protein [Desulfatibacillum alkenivorans AK-01] gi|218761287|gb|ACL03753.1| Sua5/YciO/YrdC/YwlC family protein [Desulfatibacillum alkenivorans AK-01] Length = 214 Score = 172 bits (438), Expect = 4e-41, Method: Composition-based stats. Identities = 57/201 (28%), Positives = 91/201 (45%), Gaps = 6/201 (2%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 A+ +A L G + PT +YGLA + +P A+ ++ IK RP PL+ V I Sbjct: 15 EAINQAVRILKEGGVVVFPTTGLYGLAAKASDPQAVAEVFRIKGRPDDKPLLILVDSIDQ 74 Query: 70 VKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 VK P S L + WPG +TLV ++ + P K R+ + L Sbjct: 75 VKPLVREVPESGRLLMEKLWPGGITLVF--CASDLLPPSLLGGKKKIGIRMAAHPVARAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ G P+ SAN SG+ + + + + + + PL +D G G ST+V+V + Sbjct: 133 VKGLGEPITGTSANLSGEPGAGDFRQLSLAVL-ERTPLALDAGKLAGGAGSTVVDVTEDP 191 Query: 188 KVRILRPGGLEIETLKRAISV 208 + ILR G E + A+ Sbjct: 192 PL-ILRQGAAPKEKIFNALKT 211 >gi|163803308|ref|ZP_02197186.1| Sua5/YciO/YrdC family protein [Vibrio sp. AND4] gi|159172878|gb|EDP57717.1| Sua5/YciO/YrdC family protein [Vibrio sp. AND4] Length = 185 Score = 172 bits (438), Expect = 4e-41, Method: Composition-based stats. Identities = 45/182 (24%), Positives = 76/182 (41%), Gaps = 7/182 (3%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 K E L G IA PTE V+G+ D NP AI++L +K+RP LI + + Sbjct: 5 EKVLEALQNGEVIAYPTEGVFGVGCDPDNPAAIQKLLALKQRPVEKGLILIAASYEQLMP 64 Query: 73 HASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + L+ WPGP T V+ ++ + + + RV +K+ Sbjct: 65 YIDESQLTQEQLDKVHATWPGPFTWVMP--ASDKVSHWVSGQFDSIAVRVTDHPLVQKMC 122 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 +G PL SAN +GQ + + + ++ ++ G S S I + + + Sbjct: 123 HAFGKPLTSTSANLTGQPPCMTTEEV-EQQLGDQLVAVLRGETSGRDKPSEIRDAKTSQI 181 Query: 189 VR 190 +R Sbjct: 182 LR 183 >gi|116511390|ref|YP_808606.1| translation factor SUA5 [Lactococcus lactis subsp. cremoris SK11] gi|116107044|gb|ABJ72184.1| translation factor SUA5 [Lactococcus lactis subsp. cremoris SK11] Length = 306 Score = 172 bits (438), Expect = 4e-41, Method: Composition-based stats. Identities = 59/196 (30%), Positives = 100/196 (51%), Gaps = 8/196 (4%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 +A + L G + +PTETVYGL D+ N A+++LY +K RP L +VS + K Sbjct: 110 ARAVKALKNGQLVVLPTETVYGLFADAMNEQAVQKLYSVKGRPTEKALNMNVSSFEDILK 169 Query: 73 HASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIET 130 ++ P L + F PGPLT++L+ +++++ T FR+P T+K+I+ Sbjct: 170 YSINPPDYLGKIVDAFLPGPLTIILE--ASSEVPEWIHIGKSTVGFRMPNIAVTQKVIKE 227 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G L PSAN +G S + + + + D I GL++TI+++ EK + Sbjct: 228 VGV-LVGPSANLTGSKSPSFFADLSQEILENAAVAVQDDNI--YGLDTTIIDLTQEKP-K 283 Query: 191 ILRPGGLEIETLKRAI 206 +LR G + L + + Sbjct: 284 LLRQGAVTKAELLKKV 299 >gi|292488388|ref|YP_003531270.1| hypothetical protein EAMY_1912 [Erwinia amylovora CFBP1430] gi|291553817|emb|CBA20862.1| Uncharacterized protein yciO [Erwinia amylovora CFBP1430] Length = 207 Score = 172 bits (438), Expect = 4e-41, Method: Composition-based stats. Identities = 45/196 (22%), Positives = 81/196 (41%), Gaps = 4/196 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E L+ G I PT++ Y L + +A+ R++ I++ + D+S Sbjct: 15 PRLIKQAVEMLNKGSVIVYPTDSGYALGCKLEDKSAMERIWRIRQLDGNHNFTLMCRDLS 74 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD + L K PG T +L L + KT RVP L Sbjct: 75 ELSTYAYVDNTAFRLIKNNTPGNYTFILKATKEVP-RRLMSEKRKTIGLRVPSNPIALAL 133 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E P+ S G + + I K + LII GG +T++++ E Sbjct: 134 LEALNEPMMSTSLMLPGNDFTESDPEAIQDEIGKLVDLIIHGGFLGQ-QPTTVIDLT-EN 191 Query: 188 KVRILRPGGLEIETLK 203 ++R G +++ + Sbjct: 192 TPEVVREGVGDVQPFR 207 >gi|161503166|ref|YP_001570278.1| hypothetical protein SARI_01234 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864513|gb|ABX21136.1| hypothetical protein SARI_01234 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 206 Score = 172 bits (438), Expect = 5e-41, Method: Composition-based stats. Identities = 43/188 (22%), Positives = 77/188 (40%), Gaps = 4/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A + + G I PT++ Y L + A+ R+ I++ P + D+S Sbjct: 14 QRLINQAVDIVRKGGVIVYPTDSGYALGCKIEDKGAMERICRIRQLPDGHNFTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + ++ VD ++ L K PG T +L L KT RVP L Sbjct: 74 ELSTYSFVDNVAFRLIKNNTPGNYTFILKGTKELP-RRLLQEKRKTIGLRVPSNPIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++T P+ S G + + + K++ LII GG +T++++ + Sbjct: 133 LDTLSEPMLSTSLMLPGSDFTESDPEEIKERLEKQVDLIIHGGYLGQ-QPTTVIDLTDDS 191 Query: 188 KVRILRPG 195 V +LR G Sbjct: 192 PV-VLRVG 198 >gi|292899585|ref|YP_003538954.1| hypothetical protein EAM_1875 [Erwinia amylovora ATCC 49946] gi|291199433|emb|CBJ46550.1| conserved hypothetical protein [Erwinia amylovora ATCC 49946] Length = 206 Score = 172 bits (438), Expect = 5e-41, Method: Composition-based stats. Identities = 45/196 (22%), Positives = 81/196 (41%), Gaps = 4/196 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E L+ G I PT++ Y L + +A+ R++ I++ + D+S Sbjct: 14 PRLIKQAVEMLNKGSVIVYPTDSGYALGCKLEDKSAMERIWRIRQLDGNHNFTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD + L K PG T +L L + KT RVP L Sbjct: 74 ELSTYAYVDNTAFRLIKNNTPGNYTFILKATKEVP-RRLMSEKRKTIGLRVPSNPIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E P+ S G + + I K + LII GG +T++++ E Sbjct: 133 LEALNEPMMSTSLMLPGNDFTESDPEAIQDEIGKLVDLIIHGGFLGQ-QPTTVIDLT-EN 190 Query: 188 KVRILRPGGLEIETLK 203 ++R G +++ + Sbjct: 191 TPEVVREGVGDVQPFR 206 >gi|167624539|ref|YP_001674833.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella halifaxensis HAW-EB4] gi|167354561|gb|ABZ77174.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella halifaxensis HAW-EB4] Length = 206 Score = 172 bits (438), Expect = 5e-41, Method: Composition-based stats. Identities = 42/192 (21%), Positives = 78/192 (40%), Gaps = 4/192 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A + +G I PT++ Y L + A+ ++ I++ + D S Sbjct: 14 TRLISQAVNVIKSGGVIVYPTDSGYALGCLIGDKNAMSKIARIRQIDNDHNFSLMCRDQS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD + L K PGP T + L KT RVP L Sbjct: 74 ELATYARVDNQAYRLLKQNTPGPYTFIFMASKEVP-KRLQNPKKKTIGIRVPDNVIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL S GQ + + + ++ LII GG +T++++ + Sbjct: 133 LEALGEPLMSTSLILPGQEFTESDPEHIRDILEHQVDLIIHGGYLGE-KPTTVIDL-SDG 190 Query: 188 KVRILRPGGLEI 199 ++ ++R G ++ Sbjct: 191 EIEVIREGAGDV 202 >gi|157373182|ref|YP_001471782.1| SUA5/YciO/YrdC/YwlC family protein [Shewanella sediminis HAW-EB3] gi|212288227|sp|A8FP81|RIMN_SHESH RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|157315556|gb|ABV34654.1| SUA5/YciO/YrdC/YwlC family protein [Shewanella sediminis HAW-EB3] Length = 185 Score = 172 bits (438), Expect = 5e-41, Method: Composition-based stats. Identities = 56/186 (30%), Positives = 84/186 (45%), Gaps = 7/186 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 A + E ++ G +A PTE VYGL D N AI RL +KKRP LI SD Sbjct: 3 EQAPDEVQEIIEQGGVVAYPTEAVYGLGCDPDNDEAITRLLALKKRPWQKGLILVASDYQ 62 Query: 69 MVKKHASVDPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT- 124 + + L+ L K+F WPGP T ++ + + L + + RV T Sbjct: 63 QLLPYIDESRLTNEQLNKVFVKWPGPFTFIMPIKPG--LSNLLCGSFNSLAVRVSSHPTI 120 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + + + G PL SAN +G+ + + I+ + EI +I G + STIV+ Sbjct: 121 QAICQRLGKPLVSTSANHAGEPPAMSCEEII-AKFDGEIDALISGSLGAERKPSTIVDAI 179 Query: 185 CEKKVR 190 K +R Sbjct: 180 SGKVLR 185 >gi|326335637|ref|ZP_08201824.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692403|gb|EGD34355.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 207 Score = 172 bits (438), Expect = 5e-41, Method: Composition-based stats. Identities = 46/199 (23%), Positives = 85/199 (42%), Gaps = 9/199 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP-LICHVSD 66 + ++K + L G I PT+TVYGL D + A+ R+ ++K +D Sbjct: 13 NEREVQKVVDCLREGGVIIYPTDTVYGLGCDITHSKALERIAQLKGIKLEKANFSFVCAD 72 Query: 67 ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124 +S + + +D + + K PG T +L + P KT RVP Sbjct: 73 LSNLSDYVKQIDTATFKILKRALPGAYTFILPGNTNL---PKEFKKKKTVGIRVPDNNIA 129 Query: 125 KKLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + L++ G+P+ S + I T ++ ++ ++IDGG + ST++++ Sbjct: 130 RILVKKLGNPIVSSSIYDEDEVIEYTTDPELIFEKWQDKVDMVIDGGYGD-NVASTVIDL 188 Query: 184 QCEKKVRILRPGGLEIETL 202 + ++R G IE L Sbjct: 189 ST-RVPELIREGKGSIEGL 206 >gi|260775021|ref|ZP_05883921.1| YrdC family protein [Vibrio coralliilyticus ATCC BAA-450] gi|260609111|gb|EEX35270.1| YrdC family protein [Vibrio coralliilyticus ATCC BAA-450] Length = 185 Score = 172 bits (438), Expect = 5e-41, Method: Composition-based stats. Identities = 44/185 (23%), Positives = 75/185 (40%), Gaps = 7/185 (3%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + +A L G IA PTE V+G+ D NP AI++L E+K+RP LI + Sbjct: 2 DNFEQALLALKNGEVIAYPTEGVFGVGCDPDNPEAIQKLLELKQRPVEKGLILIAASYEQ 61 Query: 70 VKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + + L+ + WPGP+T ++ + + + + RV + Sbjct: 62 LLPYIDESQLTDEQLQKVHQTWPGPVTWIMPC--SDKVSDWVSGQFDSIAVRVTDHPLVQ 119 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 K+ G PL SAN +G+ + + + I+ G S I + + Sbjct: 120 KMCNALGKPLTSTSANLTGEPPCMTTAEV-EQQLGDRLVAILAGDTGGRDKPSEIRDAKT 178 Query: 186 EKKVR 190 K +R Sbjct: 179 SKVLR 183 >gi|268325206|emb|CBH38794.1| conserved hypothetical protein, containing yrdC domain [uncultured archaeon] Length = 216 Score = 172 bits (438), Expect = 5e-41, Method: Composition-based stats. Identities = 58/192 (30%), Positives = 88/192 (45%), Gaps = 9/192 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +R A + G I PTETVYGL D+ + TA+R +Y+IK+R P+ VS Sbjct: 6 ESQIRAAIAIIKRGGTIVYPTETVYGLGADALSETAVREVYKIKRRDVTQPISVAVSSFE 65 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128 M+ K A +DP + PGP+T++L + L TA R P I Sbjct: 66 MLHKVAYIDPGISEIISALLPGPVTVLLKKKEI--VPALLTAESDVLGVRFPDNEIATRI 123 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK- 187 P+ SAN SG+ T V+ + + + +II G K + ST+V++ Sbjct: 124 IEETGPITATSANVSGRTPPTCVEEVEIEFL---VDIIIHGTKCKYSMPSTVVDMTTANE 180 Query: 188 ---KVRILRPGG 196 K++I R G Sbjct: 181 GKAKIKIKRRGA 192 >gi|322385291|ref|ZP_08058936.1| Sua5/YciO/YrdC family protein [Streptococcus cristatus ATCC 51100] gi|321270550|gb|EFX53465.1| Sua5/YciO/YrdC family protein [Streptococcus cristatus ATCC 51100] Length = 196 Score = 172 bits (438), Expect = 5e-41, Method: Composition-based stats. Identities = 65/193 (33%), Positives = 102/193 (52%), Gaps = 8/193 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + K L AG + +PTETVYGL + N A+ R+YE+K+RP L +V+ + + Sbjct: 1 MDKIENTLAAGGAVVLPTETVYGLFAQALNEEAVERVYELKRRPRDKALNLNVASLEDIY 60 Query: 72 KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129 + P L + + F PGPLT++L + + + ++T FR+P T LI Sbjct: 61 AFSKNQPSYLEQVYQAFLPGPLTIILQ--ANDRVPAWINSGMETVGFRIPKHPVTLDLIR 118 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 YG PL PSAN SG+ S T+ + I+ +E+ + D + G +STI+++ EK Sbjct: 119 KYG-PLIGPSANLSGKASGTSFQQIMMD-FQEEVSGVEDD-TALTGQDSTILDLSGEK-A 174 Query: 190 RILRPGGLEIETL 202 RILR G + E + Sbjct: 175 RILRQGAITREDI 187 >gi|281491066|ref|YP_003353046.1| Sua5/YciO/YrdC/YwlC family RNA-binding protein [Lactococcus lactis subsp. lactis KF147] gi|281374824|gb|ADA64344.1| RNA-binding protein, Sua5/YciO/YrdC/YwlC family [Lactococcus lactis subsp. lactis KF147] gi|326406101|gb|ADZ63172.1| Sua5/YciO/YrdC/YwlC family RNA-binding protein [Lactococcus lactis subsp. lactis CV56] Length = 306 Score = 172 bits (438), Expect = 5e-41, Method: Composition-based stats. Identities = 61/196 (31%), Positives = 101/196 (51%), Gaps = 8/196 (4%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 +A + L +G +PTETVYGL D+ N A+++LY +K RP L ++S + K Sbjct: 110 ARAIKALKSGQLAILPTETVYGLFADAMNEEAVQKLYSVKGRPTEKALNMNISSFEDILK 169 Query: 73 HASVDPLSLHLA-KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIET 130 ++ P+ L + F PGPLT++L+ ++ D+ T FR+P T+K+I+ Sbjct: 170 YSINQPVYLQKIVEAFLPGPLTIILE--ASKDVPEWIHIGKSTVGFRMPNIAVTQKIIKE 227 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G L PSAN SG S + + + + D S GL++TI+++ EK + Sbjct: 228 VGV-LVGPSANLSGSKSPSFFADLSPEILENAAVAVQDD--SIYGLDTTIIDLTQEKP-K 283 Query: 191 ILRPGGLEIETLKRAI 206 +LR G + E L + + Sbjct: 284 LLRQGAVTKEELLKKV 299 >gi|229525789|ref|ZP_04415194.1| hypothetical protein VCA_003425 [Vibrio cholerae bv. albensis VL426] gi|229339370|gb|EEO04387.1| hypothetical protein VCA_003425 [Vibrio cholerae bv. albensis VL426] Length = 206 Score = 172 bits (438), Expect = 5e-41, Method: Composition-based stats. Identities = 40/189 (21%), Positives = 73/189 (38%), Gaps = 4/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A + G + PT++ Y L N + R+ +I++ + D+S Sbjct: 14 TRLINQAVAIIRNGGVVVYPTDSGYALGCQLENKHGMERICQIRRLDDKHNFTLLCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD + L K PGP T + L KT RVP L Sbjct: 74 EIALYARVDNTAFRLLKNNTPGPYTFIFKGTKEVP-RRLMNEKRKTIGIRVPNNKIALDL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL S G + + + + +I++GG +T+++ + Sbjct: 133 LEALGEPLMSTSLILPGNDFTESDPEEIRDRLEHAVDVILNGGYLGQ-QPTTVIDF-SDD 190 Query: 188 KVRILRPGG 196 +V + R G Sbjct: 191 EVVVARVGA 199 >gi|162457645|ref|YP_001620012.1| putative translation factor [Sorangium cellulosum 'So ce 56'] gi|161168227|emb|CAN99532.1| Putative translation factor [Sorangium cellulosum 'So ce 56'] Length = 201 Score = 172 bits (438), Expect = 5e-41, Method: Composition-based stats. Identities = 52/196 (26%), Positives = 91/196 (46%), Gaps = 7/196 (3%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 + + +A + + G I PT+TVYG D N AI R+Y+IK L D+ Sbjct: 11 EPRKIARAIDLIQKGEVIGYPTDTVYGFGCDLMNKAAIERVYQIKGMRQNKNLAFICPDL 70 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 S + ++A V+ + + K + PGP T +L +T ++ KT RVP Sbjct: 71 SDIARYAIVENQTYRILKRYLPGPYTFILP--ATREVPKYVHLKQKTVGIRVPNHPVALA 128 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+ G PL +A G+ I + I + L++D G + + +T++++ + Sbjct: 129 LVRALGRPLISTTAAPPGEDPIIDPGEI--DDRFPGLALVLDAG-TGGSVPTTVIDL-SQ 184 Query: 187 KKVRILRPGGLEIETL 202 +V+I+R G I+ L Sbjct: 185 GEVQIVREGAGPIDDL 200 >gi|255007792|ref|ZP_05279918.1| putative Sua5/yciO/yrdC family protein [Bacteroides fragilis 3_1_12] gi|313145497|ref|ZP_07807690.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313134264|gb|EFR51624.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 204 Score = 172 bits (438), Expect = 5e-41, Method: Composition-based stats. Identities = 54/201 (26%), Positives = 86/201 (42%), Gaps = 9/201 (4%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICH 63 + L++ + L+ G I PT+T+Y + AI R+ IK+ P N L Sbjct: 8 KNNNPQDLQRIVDLLNDGGLIIYPTDTMYAIGCHGLKERAIERICRIKEIDPKKNNLSII 67 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-G 122 D+S + ++A VD L K PGP T +L+ T+ P N K R+P Sbjct: 68 CYDLSSISEYAKVDNNIFKLMKRNLPGPFTFILN---GTNRLPKIFRNRKEVGIRMPDNH 124 Query: 123 FTKKLIETYGHPLAIPSANRSGQISIT--NVKHILSSSICKEIPLIIDGGISKIGLESTI 180 +++ P+ + I ++ ++ L+IDGGI I STI Sbjct: 125 IIREIARLLDAPIMTTTLPHDEHEDIEYITDPELIDEKFGDQVDLVIDGGIGGI-EPSTI 183 Query: 181 VNVQCEKKVRILRPGGLEIET 201 VN + +V I+R G E+E Sbjct: 184 VNCT-DGEVTIVRQGKGELEE 203 >gi|223946371|gb|ACN27269.1| unknown [Zea mays] Length = 275 Score = 172 bits (438), Expect = 5e-41, Method: Composition-based stats. Identities = 66/195 (33%), Positives = 95/195 (48%), Gaps = 4/195 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + KA + ++ G IA+PT+T+YG A D+ + A+ R+YEIK R PL V D+S Sbjct: 70 KDHVLKATDAINRGEVIAVPTDTIYGFACDACSAGAVNRIYEIKGRIQTRPLAICVGDVS 129 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 + + A VD L L PGP+T+VL + + L + RVP F + + Sbjct: 130 DISRFALVDHLPHGLLDSLLPGPVTIVLKRGENSILERSLNPGLDSIGVRVPDLDFIRSI 189 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCE 186 G LA+ SAN SGQ S VK + + DGG+ G STIV++ Sbjct: 190 ARGTGSALALTSANLSGQPSSVCVKD--FEGLWPHCSYVFDGGVLPSGRAGSTIVDLITP 247 Query: 187 KKVRILRPGGLEIET 201 +ILR G ET Sbjct: 248 GVYKILRDGSSRKET 262 >gi|148981774|ref|ZP_01816522.1| putative translation factor [Vibrionales bacterium SWAT-3] gi|145960741|gb|EDK26080.1| putative translation factor [Vibrionales bacterium SWAT-3] Length = 206 Score = 172 bits (438), Expect = 5e-41, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 76/189 (40%), Gaps = 3/189 (1%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A + G + PT++ Y L N A+ R+ +I++ + D+S Sbjct: 14 ARLINQAVAIVRNGGVVVYPTDSGYALGCQLENKQALERICKIRRIDDKHNFTLLCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD ++ L K PG T + L A KT RVP L Sbjct: 74 ELSLYARVDNVAFRLLKAHTPGAYTFIFKATKEVP-KRLMNAKRKTIGIRVPDNKIALDL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL S G + + + S+ + +I++GG +T+++ + Sbjct: 133 LEAMGEPLMSTSLILPGNETTESDPEEIRDSLEHAVDVILNGGYLGE-QPTTVIDFSDDD 191 Query: 188 KVRILRPGG 196 V + R G Sbjct: 192 AVILRRGAG 200 >gi|119773191|ref|YP_925931.1| SUA5/YciO/YrdC-like protein [Shewanella amazonensis SB2B] gi|119765691|gb|ABL98261.1| translation factor SUA5 [Shewanella amazonensis SB2B] Length = 190 Score = 172 bits (438), Expect = 5e-41, Method: Composition-based stats. Identities = 48/181 (26%), Positives = 82/181 (45%), Gaps = 7/181 (3%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 + +++G +A PTE VYGL D N TAI++L +K+RP LI S +K + Sbjct: 11 QISGIIESGGVVAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWEKGLILIASSFDQLKPY 70 Query: 74 ASVDPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIE 129 + ++ L F WPGP T V+ + D+ P+ T RV + + Sbjct: 71 IDLSRVTEAQLQAAFDKWPGPFTFVIP--AKADVSPMLRGCFDTIAVRVSAHQDVRAMCY 128 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 PL SAN +G+ + + + + +I ++ G + + STI+++Q Sbjct: 129 ACQKPLVSTSANLAGEQPALTLAEV-QTQLGDKIDAVVLGALGQSCQPSTIIDIQTGHIF 187 Query: 190 R 190 R Sbjct: 188 R 188 >gi|183603846|ref|ZP_02722143.2| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae MLV-016] gi|225856677|ref|YP_002738188.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae P1031] gi|183577918|gb|EDT98446.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae MLV-016] gi|225724879|gb|ACO20731.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae P1031] gi|301799988|emb|CBW32578.1| conserved hypothetical protein [Streptococcus pneumoniae OXC141] gi|332200607|gb|EGJ14679.1| yrdC domain protein [Streptococcus pneumoniae GA41317] Length = 200 Score = 172 bits (438), Expect = 5e-41, Method: Composition-based stats. Identities = 62/197 (31%), Positives = 103/197 (52%), Gaps = 8/197 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + L+ G + +PTETVYGL + + A+ +Y++K+RP L +V+ + + Sbjct: 2 MDRIRQELENGGAVILPTETVYGLFAKALDEKAVDHVYQLKRRPRDKALNLNVASLEDIL 61 Query: 72 KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P L L + F PGPLT++L+ + + ++L T FR+P T LI Sbjct: 62 HFSKNQPAYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIR 119 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL PSAN SGQ S + IL + + L D ++ G +STIV++ +K V Sbjct: 120 ETG-PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGDK-V 175 Query: 190 RILRPGGLEIETLKRAI 206 +ILR G ++ E + + Sbjct: 176 KILRQGAIKREDILARL 192 >gi|23200231|pdb|1K7J|A Chain A, Structural Genomics, Protein Tf1 Length = 206 Score = 172 bits (438), Expect = 5e-41, Method: Composition-based stats. Identities = 44/188 (23%), Positives = 76/188 (40%), Gaps = 4/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A E + G I PT++ Y L + A R+ I++ P + D+S Sbjct: 14 QRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAXERICRIRQLPDGHNFTLXCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + ++ VD ++ L K PG T +L L KT RVP + L Sbjct: 74 ELSTYSFVDNVAFRLXKNNTPGNYTFILKGTKEVP-RRLLQEKRKTIGXRVPSNPIAQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G P S G + + + K++ LII GG +T++++ + Sbjct: 133 LEALGEPXLSTSLXLPGSEFTESDPEEIKDRLEKQVDLIIHGGYLGQ-KPTTVIDLTDDT 191 Query: 188 KVRILRPG 195 V ++R G Sbjct: 192 PV-VVREG 198 >gi|269102963|ref|ZP_06155660.1| YrdC family protein [Photobacterium damselae subsp. damselae CIP 102761] gi|268162861|gb|EEZ41357.1| YrdC family protein [Photobacterium damselae subsp. damselae CIP 102761] Length = 221 Score = 172 bits (437), Expect = 6e-41, Method: Composition-based stats. Identities = 40/196 (20%), Positives = 74/196 (37%), Gaps = 4/196 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A E + G I PT++ Y L N +A+ R+ +I++ + D+S Sbjct: 28 TRLINQAVEIIRNGGVIVYPTDSGYALGCQLENKSALERICQIRRLNDKHNFTLLCRDLS 87 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD + L + PG T + L KT RVP L Sbjct: 88 EISLYARVDNAAFRLLRNNTPGAYTFIFKGTKDVP-RRLMNPKRKTIGIRVPDNQIALDL 146 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G P+ S + + + + LII GG +T+++ + Sbjct: 147 LAALGEPMMSTSLILPNHEMTESDPDEIRDKLEHAVDLIIHGGYLGE-QPTTVIDFSNDD 205 Query: 188 KVRILRPGGLEIETLK 203 + I+R G + + Sbjct: 206 -IEIVRVGAGDPAPFE 220 >gi|255746765|ref|ZP_05420711.1| YrdC family protein [Vibrio cholera CIRS 101] gi|262166889|ref|ZP_06034610.1| YrdC family protein [Vibrio cholerae RC27] gi|255735522|gb|EET90921.1| YrdC family protein [Vibrio cholera CIRS 101] gi|262024660|gb|EEY43340.1| YrdC family protein [Vibrio cholerae RC27] Length = 185 Score = 172 bits (437), Expect = 6e-41, Method: Composition-based stats. Identities = 53/190 (27%), Positives = 86/190 (45%), Gaps = 10/190 (5%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 L++A + L G IA PTE V+GL D N TA+ RL IK+RP +I + + Sbjct: 2 ENLQQAVDALRKGCVIAYPTEGVFGLGCDPDNQTAMLRLLAIKQRPVEKGVILIAASYAQ 61 Query: 70 VKKHASVDPLSLHLA---KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 ++ + L+ WP PLT V+ ++ D T RV + Sbjct: 62 LRPYVDETQLTAEQLTQVLASWPAPLTWVMP--ASGDTPSWVRGQFDTVAVRVSDHPVVQ 119 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 KL +G PL SAN SGQ + + ++ + +I ++++G S S I + + Sbjct: 120 KLCLAFGKPLTSTSANLSGQPACVTQQEVMV-QLGNQIAVVVEGKTSGRHGPSEIRDARS 178 Query: 186 EKKVRILRPG 195 +++LR G Sbjct: 179 ---LQVLRQG 185 >gi|300723350|ref|YP_003712653.1| protein yciO [Xenorhabdus nematophila ATCC 19061] gi|297629870|emb|CBJ90488.1| Protein yciO [Xenorhabdus nematophila ATCC 19061] Length = 206 Score = 172 bits (437), Expect = 6e-41, Method: Composition-based stats. Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 6/189 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + ++ E L G + PT++ Y + N A+ R+ I++ + D+S Sbjct: 14 ARLIEQSAEVLKKGGVVIYPTDSGYAIGCCLENKDAMTRICRIRQLEGRHNFTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD + L K PG T +L L KT RVP +L Sbjct: 74 EISTYAHVDNQAFRLIKNNTPGNYTFILQATKEVP-RRLMNEKRKTIGLRVPSNPIALEL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES-TIVNVQCE 186 +E G PL S G + + ++ K++ LII GG +G +S T+V++ + Sbjct: 133 LEKMGEPLMSCSLILPGNDFAESDPEEIKETLGKQVDLIIHGGY--LGQQSTTVVDLTGD 190 Query: 187 KKVRILRPG 195 V ILR G Sbjct: 191 SPV-ILREG 198 >gi|183599267|ref|ZP_02960760.1| hypothetical protein PROSTU_02728 [Providencia stuartii ATCC 25827] gi|188021499|gb|EDU59539.1| hypothetical protein PROSTU_02728 [Providencia stuartii ATCC 25827] Length = 206 Score = 172 bits (437), Expect = 6e-41, Method: Composition-based stats. Identities = 46/197 (23%), Positives = 82/197 (41%), Gaps = 6/197 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + ++ E L+ G I PT++ Y + A++R+ I++ A + D+S Sbjct: 14 ARLINQSVEILNKGGVIVYPTDSGYAIGCRLEEKEALQRICRIRQLDANHNFTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD + L K PG T +L L KT RVP + L Sbjct: 74 ELSNYAHVDNTAFRLIKNNTPGNYTFILRGTKEVP-RRLMNEKRKTIGLRVPSNPIARDL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL-ESTIVNVQCE 186 +E G PL S G + + + K++ L+I GG IG +T+++ + Sbjct: 133 LEAVGEPLMSTSLIMPGDDFTQSDPEEIRDLLGKQVDLVIHGGY--IGQKPTTVIDFTDD 190 Query: 187 KKVRILRPGGLEIETLK 203 V ++R G + + Sbjct: 191 SPV-VVRVGTGDPSPFE 206 >gi|153826414|ref|ZP_01979081.1| Sua5/YciO/YrdC family protein [Vibrio cholerae MZO-2] gi|149739800|gb|EDM53995.1| Sua5/YciO/YrdC family protein [Vibrio cholerae MZO-2] Length = 188 Score = 172 bits (437), Expect = 6e-41, Method: Composition-based stats. Identities = 53/190 (27%), Positives = 87/190 (45%), Gaps = 10/190 (5%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 L++A + L G IA PTE V+GL D N TA++RL IK+RP +I + + Sbjct: 5 ENLQQAVDALRKGCVIAYPTEGVFGLGCDPDNQTAMQRLLAIKQRPVEKGVILIAASYAQ 64 Query: 70 VKKHASVDPLSLHLA---KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 ++ + L+ WP PLT V+ ++ D T RV + Sbjct: 65 LRPYVDETQLTAEQLTQVLASWPAPLTWVMP--ASGDTPSWIRGQFDTVAVRVSDHPVVQ 122 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 KL +G PL SAN SGQ + + ++ + +I ++++G S S I + + Sbjct: 123 KLCLAFGKPLTSTSANLSGQPACVTRQEVMV-QLGNQIAVVVEGKTSGRHGPSEIRDARS 181 Query: 186 EKKVRILRPG 195 +++LR G Sbjct: 182 ---LQVLRQG 188 >gi|302344113|ref|YP_003808642.1| Sua5/YciO/YrdC/YwlC family protein [Desulfarculus baarsii DSM 2075] gi|301640726|gb|ADK86048.1| Sua5/YciO/YrdC/YwlC family protein [Desulfarculus baarsii DSM 2075] Length = 203 Score = 172 bits (437), Expect = 6e-41, Method: Composition-based stats. Identities = 52/198 (26%), Positives = 92/198 (46%), Gaps = 6/198 (3%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 + + L G +A PT+T YGL D + A+RRL++IK +P P D Sbjct: 10 IQPRKIAQVTAALREGGVVAYPTDTSYGLGCDIFSQKALRRLHQIKAQPESKPFSFICPD 69 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + + +A+V + + PGP T VL+ + + KT RVP Sbjct: 70 LKDLSTYANVTNYAYKTLRRLLPGPYTFVLE--GSRHAPKMVLTKRKTVGIRVPDHPVCL 127 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +++ GHP+A +A GQ N + S + + L++DGG + GL S+++ + Sbjct: 128 AIVQELGHPIASTTA-MDGQGRALNTPWEIESELGHALDLVVDGGPAP-GLLSSVIGLIG 185 Query: 186 EKKVRILRPGGLEIETLK 203 ++ +I+R G ++E + Sbjct: 186 DEP-QIIREGAGDVEEFR 202 >gi|148984976|ref|ZP_01818219.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae SP3-BS71] gi|147922674|gb|EDK73791.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae SP3-BS71] Length = 199 Score = 172 bits (437), Expect = 6e-41, Method: Composition-based stats. Identities = 62/197 (31%), Positives = 103/197 (52%), Gaps = 8/197 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + L+ G + +PTETVYGL + + A+ +Y++K+RP L +V+ + + Sbjct: 1 MDRIRQELENGGAVILPTETVYGLFAKALDEKAVDHVYQLKRRPRDKALNLNVASLEDIL 60 Query: 72 KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P L L + F PGPLT++L+ + + ++L T FR+P T LI Sbjct: 61 HFSKNQPAYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIR 118 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL PSAN SGQ S + IL + + L D ++ G +STIV++ +K V Sbjct: 119 ETG-PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGDK-V 174 Query: 190 RILRPGGLEIETLKRAI 206 +ILR G ++ E + + Sbjct: 175 KILRQGAIKREDILARL 191 >gi|169833958|ref|YP_001694466.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae Hungary19A-6] gi|183603195|ref|ZP_02713042.2| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae SP195] gi|183603653|ref|ZP_02718594.2| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae CDC3059-06] gi|221231775|ref|YP_002510927.1| hypothetical protein SPN23F_09450 [Streptococcus pneumoniae ATCC 700669] gi|225854523|ref|YP_002736035.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae JJA] gi|225861005|ref|YP_002742514.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae Taiwan19F-14] gi|298230458|ref|ZP_06964139.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255328|ref|ZP_06978914.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502958|ref|YP_003724898.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae TCH8431/19A] gi|307067801|ref|YP_003876767.1| putative translation factor [Streptococcus pneumoniae AP200] gi|168996460|gb|ACA37072.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae Hungary19A-6] gi|183572442|gb|EDT92970.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae SP195] gi|183575597|gb|EDT96125.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae CDC3059-06] gi|220674235|emb|CAR68770.1| conserved hypothetical protein [Streptococcus pneumoniae ATCC 700669] gi|225722954|gb|ACO18807.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae JJA] gi|225728267|gb|ACO24118.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae Taiwan19F-14] gi|298238553|gb|ADI69684.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae TCH8431/19A] gi|301794158|emb|CBW36568.1| conserved hypothetical protein [Streptococcus pneumoniae INV104] gi|306409338|gb|ADM84765.1| Putative translation factor (SUA5) [Streptococcus pneumoniae AP200] gi|327389394|gb|EGE87739.1| yrdC domain protein [Streptococcus pneumoniae GA04375] gi|332073354|gb|EGI83833.1| yrdC domain protein [Streptococcus pneumoniae GA17570] gi|332075370|gb|EGI85839.1| yrdC domain protein [Streptococcus pneumoniae GA41301] gi|332201493|gb|EGJ15563.1| yrdC domain protein [Streptococcus pneumoniae GA47368] gi|332202884|gb|EGJ16952.1| yrdC domain protein [Streptococcus pneumoniae GA47901] Length = 200 Score = 172 bits (437), Expect = 6e-41, Method: Composition-based stats. Identities = 61/197 (30%), Positives = 102/197 (51%), Gaps = 8/197 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + L+ G + +PTETVYGL + + A+ +Y++K+RP L +++ + Sbjct: 2 MDRIRQELENGGAVVLPTETVYGLFAKALDEKAVDHVYQLKRRPRDKALNLNIASFEDIL 61 Query: 72 KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P L L + F PGPLT++L+ + + ++L T FR+P T LI Sbjct: 62 HFSKNQPTYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIR 119 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL PSAN SGQ S + IL + + L D ++ G +STIV++ +K V Sbjct: 120 ETG-PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGDK-V 175 Query: 190 RILRPGGLEIETLKRAI 206 +ILR G ++ E + + Sbjct: 176 KILRQGAIKREDILARL 192 >gi|107028721|ref|YP_625816.1| Sua5/YciO/YrdC/YwlC [Burkholderia cenocepacia AU 1054] gi|116690120|ref|YP_835743.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia cenocepacia HI2424] gi|170733453|ref|YP_001765400.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia cenocepacia MC0-3] gi|206560533|ref|YP_002231298.1| hypothetical protein BCAL2171 [Burkholderia cenocepacia J2315] gi|105897885|gb|ABF80843.1| Sua5/YciO/YrdC/YwlC [Burkholderia cenocepacia AU 1054] gi|116648209|gb|ABK08850.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia cenocepacia HI2424] gi|169816695|gb|ACA91278.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia cenocepacia MC0-3] gi|198036575|emb|CAR52472.1| conserved hypothetical protein [Burkholderia cenocepacia J2315] Length = 210 Score = 172 bits (437), Expect = 6e-41, Method: Composition-based stats. Identities = 50/193 (25%), Positives = 82/193 (42%), Gaps = 4/193 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E + G IA+PT++ Y LA + A+ R+ I+ L V D+S Sbjct: 14 PRLIKQAVEIVSKGGVIAMPTDSSYALACHLDDKDAVERVRRIRGLDEKQHLSLLVRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + A VD K PGP +L LS + KT RVP T L Sbjct: 74 ELANFAMVDNRQYRQIKSVTPGPYVFILQATKEVP-RRLSHPSRKTIGLRVPDHAITLAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E+ G PL + N + + + K++ L+IDGG ST++++ + Sbjct: 133 LESLGQPLLGTTLILPPDDEPLNDPEEIRTRLEKQVDLVIDGGACPR-EPSTVIDLTGDA 191 Query: 188 KVRILRPGGLEIE 200 ++R G +E Sbjct: 192 P-ELIRAGRGALE 203 >gi|183600716|ref|ZP_02962209.1| hypothetical protein PROSTU_04312 [Providencia stuartii ATCC 25827] gi|188019696|gb|EDU57736.1| hypothetical protein PROSTU_04312 [Providencia stuartii ATCC 25827] Length = 189 Score = 172 bits (437), Expect = 6e-41, Method: Composition-based stats. Identities = 54/191 (28%), Positives = 77/191 (40%), Gaps = 8/191 (4%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 M + A+ L+ G IA PTE V+GL D + A+ +L E+K+RP LI Sbjct: 1 MQNKATPAIENIIISLNKGEVIAYPTEAVFGLGCDPDSEQAVNKLLELKQRPWEKGLILI 60 Query: 64 VSDISMVKKHASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 + +K + WPGP+T V+ S+T T T RV Sbjct: 61 ADNYEQLKDYVDDSQLTDEQKQTMFASWPGPVTWVIPAKSST--PKWLTGRFDTLAVRVT 118 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 K+L YG PL SAN SGQ +L IP ++DG + S Sbjct: 119 DHGLVKELCREYGKPLVSTSANLSGQEPCRTTNEVL-EQFKGSIP-VLDGMVGGRQNPSE 176 Query: 180 IVNVQCEKKVR 190 I + + + R Sbjct: 177 IRDAKTGQLYR 187 >gi|253751630|ref|YP_003024771.1| hypothetical protein SSUSC84_0755 [Streptococcus suis SC84] gi|253753532|ref|YP_003026673.1| hypothetical protein SSU0792 [Streptococcus suis P1/7] gi|253755643|ref|YP_003028783.1| hypothetical protein SSUBM407_1043 [Streptococcus suis BM407] gi|251815919|emb|CAZ51533.1| conserved hypothetical protein [Streptococcus suis SC84] gi|251818107|emb|CAZ55901.1| conserved hypothetical protein [Streptococcus suis BM407] gi|251819778|emb|CAR45685.1| conserved hypothetical protein [Streptococcus suis P1/7] Length = 200 Score = 172 bits (437), Expect = 6e-41, Method: Composition-based stats. Identities = 67/205 (32%), Positives = 109/205 (53%), Gaps = 9/205 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + K L+ G + +PTETVYGL + N A+ R+Y++K+RP + +VS+++ + Sbjct: 1 MDKLRTILENGGAVILPTETVYGLFAQALNEDAVNRVYQLKQRPRDKAMNLNVSNLNDIY 60 Query: 72 KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P L L F PGPLT++L + ++ + L T FR+P T +LI Sbjct: 61 FFSQNTPFFLEKLYNRFMPGPLTIIL--KANDNVPFWVNSGLDTVGFRLPNHEQTLRLIS 118 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL PSAN SG S + + ++P I D + G++STI+++ +K Sbjct: 119 ETG-PLIGPSANISGNESGKKFSD-IQAQFSVDLPGIEDD-QALTGIDSTILDLSG-QKA 174 Query: 190 RILRPGGLEIETLKRAISVELEYCV 214 RILR G + E +++AI E+E+ V Sbjct: 175 RILRQGAISREEIQKAI-PEIEFEV 198 >gi|209522310|ref|ZP_03270935.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. H160] gi|209497255|gb|EDZ97485.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. H160] Length = 211 Score = 172 bits (437), Expect = 6e-41, Method: Composition-based stats. Identities = 48/189 (25%), Positives = 83/189 (43%), Gaps = 3/189 (1%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A + ++ G +A+PT++ Y LA + A+ RL ++ L V D+S Sbjct: 14 PRLVKQAAQIINDGGVVALPTDSTYALACRLDDKDAVERLRRVRGLDDKQLLSLLVRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + A VD L K PGP VL +S + KT RVP T + Sbjct: 74 ELANFAMVDNWQYRLLKSVTPGPYVFVLQATKEVP-RRVSHPSRKTIGLRVPDHAITLAI 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL + G+ N + + + K++ L+IDGG + ST++++ + Sbjct: 133 LEELGQPLLSTTLIMPGETEPLNDPEEIRALLEKQLDLVIDGGAC-VCEPSTVIDLTGSE 191 Query: 188 KVRILRPGG 196 V + G Sbjct: 192 PVLVRAGRG 200 >gi|146318504|ref|YP_001198216.1| translation factor (SUA5) [Streptococcus suis 05ZYH33] gi|146320695|ref|YP_001200406.1| translation factor (SUA5) [Streptococcus suis 98HAH33] gi|145689310|gb|ABP89816.1| Putative translation factor (SUA5) [Streptococcus suis 05ZYH33] gi|145691501|gb|ABP92006.1| Putative translation factor (SUA5) [Streptococcus suis 98HAH33] gi|292558285|gb|ADE31286.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus suis GZ1] gi|319758068|gb|ADV70010.1| putative translation factor (SUA5) [Streptococcus suis JS14] Length = 202 Score = 172 bits (437), Expect = 6e-41, Method: Composition-based stats. Identities = 67/205 (32%), Positives = 109/205 (53%), Gaps = 9/205 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + K L+ G + +PTETVYGL + N A+ R+Y++K+RP + +VS+++ + Sbjct: 3 MDKLRTILENGGAVILPTETVYGLFAQALNEDAVNRVYQLKQRPRDKAMNLNVSNLNDIY 62 Query: 72 KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P L L F PGPLT++L + ++ + L T FR+P T +LI Sbjct: 63 FFSQNTPFFLEKLYNRFMPGPLTIIL--KANDNVPFWVNSGLDTVGFRLPNHEQTLRLIS 120 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL PSAN SG S + + ++P I D + G++STI+++ +K Sbjct: 121 ETG-PLIGPSANISGNESGKKFSD-IQAQFSVDLPGIEDD-QALTGIDSTILDLSG-QKA 176 Query: 190 RILRPGGLEIETLKRAISVELEYCV 214 RILR G + E +++AI E+E+ V Sbjct: 177 RILRQGAISREEIQKAI-PEIEFEV 200 >gi|188533748|ref|YP_001907545.1| hypothetical protein ETA_16060 [Erwinia tasmaniensis Et1/99] gi|188028790|emb|CAO96652.1| Conserved hypothetical protein [Erwinia tasmaniensis Et1/99] Length = 206 Score = 172 bits (437), Expect = 6e-41, Method: Composition-based stats. Identities = 44/196 (22%), Positives = 79/196 (40%), Gaps = 4/196 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E L+ G I PT++ Y L + A+ R+ I+K + D+S Sbjct: 14 PRLIKQAVEMLNKGSVIVYPTDSGYALGCKLEDKNALERICRIRKLDGNHNFTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD + L K PG T +L L + KT RVP L Sbjct: 74 ELSTYAYVDNTAFRLIKNNTPGNYTFILKATKEVP-RRLMSEKRKTIGLRVPSNPIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E P+ S G + + + K + LII GG +T++++ + Sbjct: 133 LEALNEPMMSTSLILPGNDFTESDPEAIQDELGKLVDLIIHGGYLGQ-QPTTVIDLTEDA 191 Query: 188 KVRILRPGGLEIETLK 203 ++R G +++ + Sbjct: 192 P-EVVREGVGDVQPFR 206 >gi|148994241|ref|ZP_01823534.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae SP9-BS68] gi|148998844|ref|ZP_01826280.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae SP11-BS70] gi|147755271|gb|EDK62322.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae SP11-BS70] gi|147927382|gb|EDK78413.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae SP9-BS68] Length = 199 Score = 172 bits (437), Expect = 6e-41, Method: Composition-based stats. Identities = 61/197 (30%), Positives = 102/197 (51%), Gaps = 8/197 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + L+ G + +PTETVYGL + + A+ +Y++K+RP L +++ + Sbjct: 1 MDRIRQELENGGAVVLPTETVYGLFAKALDEKAVDHVYQLKRRPRDKALNLNIASFEDIL 60 Query: 72 KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P L L + F PGPLT++L+ + + ++L T FR+P T LI Sbjct: 61 HFSKNQPTYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIR 118 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL PSAN SGQ S + IL + + L D ++ G +STIV++ +K V Sbjct: 119 ETG-PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGDK-V 174 Query: 190 RILRPGGLEIETLKRAI 206 +ILR G ++ E + + Sbjct: 175 KILRQGAIKREDILARL 191 >gi|171322306|ref|ZP_02911138.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia ambifaria MEX-5] gi|172061054|ref|YP_001808706.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia ambifaria MC40-6] gi|171092368|gb|EDT37729.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia ambifaria MEX-5] gi|171993571|gb|ACB64490.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia ambifaria MC40-6] Length = 210 Score = 172 bits (437), Expect = 6e-41, Method: Composition-based stats. Identities = 49/193 (25%), Positives = 84/193 (43%), Gaps = 4/193 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A + + G IA+PT++ Y LA + A+ R+ I+ L V D+S Sbjct: 14 PRLIKQAADIVSKGGVIAMPTDSSYALACHLDDKDAVERVRRIRGLDDKQHLSLLVRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + A VD K PGP +L LS + KT RVP T L Sbjct: 74 ELANFAMVDNRQYRQIKSVTPGPYVFILQATKEVP-RRLSHPSRKTIGLRVPDHAITLAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E+ G PL + N + + + K++ L+IDGG ST++++ ++ Sbjct: 133 LESLGQPLLGTTLILPPDDEPLNDPEDIRARLEKQVDLVIDGGACPR-EPSTVIDLTGDE 191 Query: 188 KVRILRPGGLEIE 200 +++R G +E Sbjct: 192 P-QLVRAGRGALE 203 >gi|153830131|ref|ZP_01982798.1| Sua5/YciO/YrdC family protein [Vibrio cholerae 623-39] gi|148874395|gb|EDL72530.1| Sua5/YciO/YrdC family protein [Vibrio cholerae 623-39] Length = 188 Score = 172 bits (437), Expect = 6e-41, Method: Composition-based stats. Identities = 53/190 (27%), Positives = 86/190 (45%), Gaps = 10/190 (5%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 L++A + L G IA PTE V+GL D N TA+ RL IK+RP +I + + Sbjct: 5 ENLQQAVDALRKGCVIAYPTEGVFGLGCDPDNQTAMLRLLAIKQRPVEKGVILIAASYAQ 64 Query: 70 VKKHASVDPLSLHLA---KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 ++ + L+ WP PLT V+ ++ D T RV + Sbjct: 65 LRPYVDETQLTADQLTQVLASWPAPLTWVMP--ASGDTPSWVRGQFDTVAVRVSDHPVVQ 122 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 KL +G PL SAN SGQ + + ++ + +I ++++G S S I + + Sbjct: 123 KLCLAFGKPLTSTSANLSGQPACVTQQEVMV-QLGNQIAVVVEGKTSGRHGPSEIRDARS 181 Query: 186 EKKVRILRPG 195 +++LR G Sbjct: 182 ---LQVLRQG 188 >gi|238020912|ref|ZP_04601338.1| hypothetical protein GCWU000324_00809 [Kingella oralis ATCC 51147] gi|237867892|gb|EEP68898.1| hypothetical protein GCWU000324_00809 [Kingella oralis ATCC 51147] Length = 206 Score = 172 bits (437), Expect = 6e-41, Method: Composition-based stats. Identities = 41/188 (21%), Positives = 74/188 (39%), Gaps = 5/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E + G I PT++ Y + + TA+ R+ I+K + L +D+S Sbjct: 14 ERLIKQAVEIVRKGGVIVYPTDSCYAIGCALGDKTAMERILAIRKIDLKHHLTLMCADLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD K PG T +L L KT RVP L Sbjct: 74 DLGTYAKVDNSQFRQLKAATPGSYTFILQATKEVPNRTL-HPKRKTIGLRVPDNAIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ G P+ + + + + + L+IDGG +T++++ Sbjct: 133 LKELGEPMLSSTLMLPEDDEPLTDPYEIRDRLEHAVDLVIDGGWCGT-EPTTVIDMTDG- 190 Query: 188 KVRILRPG 195 V ++R G Sbjct: 191 -VELVRQG 197 >gi|148642672|ref|YP_001273185.1| Sua5/YciO/YrdC/YwlC family translation factor [Methanobrevibacter smithii ATCC 35061] gi|222445831|ref|ZP_03608346.1| hypothetical protein METSMIALI_01475 [Methanobrevibacter smithii DSM 2375] gi|148551689|gb|ABQ86817.1| putative translation factor, Sua5/YciO/YrdC/YwlC family [Methanobrevibacter smithii ATCC 35061] gi|222435396|gb|EEE42561.1| hypothetical protein METSMIALI_01475 [Methanobrevibacter smithii DSM 2375] Length = 193 Score = 172 bits (437), Expect = 7e-41, Method: Composition-based stats. Identities = 53/198 (26%), Positives = 87/198 (43%), Gaps = 10/198 (5%) Query: 1 MQIMSIT----DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56 M+I+ D + +A + L G I PT+TVYGL + N A++R+Y IKKR Sbjct: 1 MKILKTNQNKVDKKVIDEAVKVLADGGVILYPTDTVYGLGANIFNRKAVKRVYNIKKRSY 60 Query: 57 MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 + P+ VS + + L+ + PGP T +L H T+ Sbjct: 61 LKPISLLVSSKDAIPLVSRASVNQLNFMDKYLPGPYTFILKKSKIVPRH--LTSGSANVG 118 Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 RVP L + + P+ SAN S + + + + + E+ L+ID G K Sbjct: 119 IRVPESEIACNLAKLF--PITTTSANISSE-NTLDTPEEILKQLGCEVDLVIDVGPLKSK 175 Query: 176 LESTIVNVQCEKKVRILR 193 STI+++ E+ + + R Sbjct: 176 NPSTIIDLTAEEPIFVKR 193 >gi|307127429|ref|YP_003879460.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae 670-6B] gi|306484491|gb|ADM91360.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae 670-6B] Length = 200 Score = 172 bits (437), Expect = 7e-41, Method: Composition-based stats. Identities = 62/197 (31%), Positives = 103/197 (52%), Gaps = 8/197 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + L+ G + +PTETVYGL + + A+ +Y++K+RP L +V+ + + Sbjct: 2 MDRIRQELEKGGAVILPTETVYGLFAKALDEKAVDHVYQLKRRPRDKALNLNVASLEDIL 61 Query: 72 KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P L L + F PGPLT++L+ + + ++L T FR+P T LI Sbjct: 62 HFSKNQPAYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIR 119 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL PSAN SGQ S + IL + + L D ++ G +STIV++ +K V Sbjct: 120 ETG-PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGDK-V 175 Query: 190 RILRPGGLEIETLKRAI 206 +ILR G ++ E + + Sbjct: 176 KILRQGAIKREDILARL 192 >gi|282163670|ref|YP_003356055.1| hypothetical protein MCP_1000 [Methanocella paludicola SANAE] gi|282155984|dbj|BAI61072.1| conserved hypothetical protein [Methanocella paludicola SANAE] Length = 197 Score = 172 bits (437), Expect = 7e-41, Method: Composition-based stats. Identities = 56/195 (28%), Positives = 89/195 (45%), Gaps = 13/195 (6%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 N + +A + G IA PTETVYG+ + + A++R+Y+IK RP PL VS + M Sbjct: 5 NDIARAAGIVKTGGVIAYPTETVYGIGALATDVGALQRVYQIKNRPLNQPLSIAVSSMEM 64 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129 +K A V+ F PGP+T++L + + TA K R P + Sbjct: 65 LKSVAKVECE--DFILKFLPGPVTVIL--KKNKILPDILTARSKYIGIRWPDNKMALDLI 120 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+ SAN G+ + + + + ++DGG + G STIV++ V Sbjct: 121 NQTGPIVSTSANLHGEKDPVRAEEVKIA-----VDYVLDGGPCRYGAPSTIVDLHEYTVV 175 Query: 190 RILRPGGLEIETLKR 204 R G+ E ++R Sbjct: 176 R----KGIMYEEVRR 186 >gi|212288263|sp|A1S1K5|RIMN_SHEAM RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN Length = 187 Score = 172 bits (437), Expect = 7e-41, Method: Composition-based stats. Identities = 48/181 (26%), Positives = 82/181 (45%), Gaps = 7/181 (3%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 + +++G +A PTE VYGL D N TAI++L +K+RP LI S +K + Sbjct: 8 QISGIIESGGVVAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWEKGLILIASSFDQLKPY 67 Query: 74 ASVDPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIE 129 + ++ L F WPGP T V+ + D+ P+ T RV + + Sbjct: 68 IDLSRVTEAQLQAAFDKWPGPFTFVIP--AKADVSPMLRGCFDTIAVRVSAHQDVRAMCY 125 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 PL SAN +G+ + + + + +I ++ G + + STI+++Q Sbjct: 126 ACQKPLVSTSANLAGEQPALTLAEV-QTQLGDKIDAVVLGALGQSCQPSTIIDIQTGHIF 184 Query: 190 R 190 R Sbjct: 185 R 185 >gi|172079499|ref|ZP_02708045.2| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae CDC1873-00] gi|172043340|gb|EDT51386.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae CDC1873-00] Length = 200 Score = 172 bits (437), Expect = 7e-41, Method: Composition-based stats. Identities = 61/197 (30%), Positives = 102/197 (51%), Gaps = 8/197 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + L+ G + +PTETVYGL + + A+ +Y++K+RP L +++ + Sbjct: 2 MDRIRQELENGGAVVLPTETVYGLFAKALDEKAVDHVYQLKRRPRDKALNLNIASFEDIL 61 Query: 72 KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P L L + F PGPLT++L+ + + ++L T FR+P T LI Sbjct: 62 HFSKNQPAYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIR 119 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL PSAN SGQ S + IL + + L D ++ G +STIV++ +K V Sbjct: 120 ETG-PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGDK-V 175 Query: 190 RILRPGGLEIETLKRAI 206 +ILR G ++ E + + Sbjct: 176 KILRQGAIKREDILARL 192 >gi|238027994|ref|YP_002912225.1| Sua5/YciO/YrdC/YwlC [Burkholderia glumae BGR1] gi|237877188|gb|ACR29521.1| Sua5/YciO/YrdC/YwlC [Burkholderia glumae BGR1] Length = 211 Score = 172 bits (437), Expect = 7e-41, Method: Composition-based stats. Identities = 58/204 (28%), Positives = 85/204 (41%), Gaps = 8/204 (3%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 Q I N +R+A E + G IA+PT++ Y LA + A+ R+ I+ Sbjct: 3 QFFRIHPENPQPRLVRQAVEIVKQGGVIAMPTDSSYALACQLDDRAAVERVRRIRGLDEK 62 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 L V D+S + A VD L K PGP VL LS + KT Sbjct: 63 QLLSLLVRDLSELANFAMVDNHQYRLIKSVTPGPYVFVLQATKEVP-RRLSHPSRKTIGL 121 Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 RVP T ++E G PL + N + + K++ L+IDGG Sbjct: 122 RVPDHAITLAVLEALGEPLLGTTLILPPDTDPLNDPEEIRERLEKQVDLVIDGGACPR-E 180 Query: 177 ESTIVNVQCEKKVRILRPGGLEIE 200 STIV++ + V ++R G +E Sbjct: 181 PSTIVDLTGAEPV-LVRAGRGPLE 203 >gi|254247809|ref|ZP_04941130.1| conserved hypothetical protein [Burkholderia cenocepacia PC184] gi|124872585|gb|EAY64301.1| conserved hypothetical protein [Burkholderia cenocepacia PC184] Length = 210 Score = 172 bits (437), Expect = 7e-41, Method: Composition-based stats. Identities = 50/193 (25%), Positives = 82/193 (42%), Gaps = 4/193 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E + G IA+PT++ Y LA + A+ R+ I+ L V D+S Sbjct: 14 PRLIKQAVEIVSKGGVIAMPTDSSYALACHLDDKDAVERVRRIRGLDEKQHLSLLVRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + A VD K PGP +L LS + KT RVP T L Sbjct: 74 ELANFAMVDNRQYRQIKSVTPGPYVFILQATKEVP-RRLSHPSRKTIGLRVPDHAITLAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E+ G PL + N + + + K++ L+IDGG ST++++ + Sbjct: 133 LESLGQPLLGTTLILPPDDEPLNDPEEIRTRLEKQVDLVIDGGACPR-EPSTVIDLTGDA 191 Query: 188 KVRILRPGGLEIE 200 ++R G +E Sbjct: 192 P-ELVRAGRGALE 203 >gi|269959634|ref|ZP_06174014.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269835557|gb|EEZ89636.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 206 Score = 172 bits (436), Expect = 7e-41, Method: Composition-based stats. Identities = 41/196 (20%), Positives = 77/196 (39%), Gaps = 4/196 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A + +G + PT++ Y L N A+ R+ +I++ + D+S Sbjct: 14 ARLINQAVAIIRSGGVVVYPTDSGYALGCQLENKQALERICQIRRLDDKHNFTLLCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD + L K PGP T + L A KT RVP L Sbjct: 74 ELSLYARVDNAAFRLLKNNTPGPYTFIFKGTKEVP-RRLMNAKRKTIGIRVPDNRIALDL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G P+ S G + + + + +I++GG +T+++ E Sbjct: 133 LEALGEPMMSTSLILPGSDVTESDPEDIRDKLEHAVDVILNGGYLGE-QPTTVIDF-SEG 190 Query: 188 KVRILRPGGLEIETLK 203 + + R G + + Sbjct: 191 EAVVARVGSGDPAPFE 206 >gi|149006294|ref|ZP_01830006.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae SP18-BS74] gi|147762071|gb|EDK69033.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae SP18-BS74] Length = 199 Score = 172 bits (436), Expect = 7e-41, Method: Composition-based stats. Identities = 62/197 (31%), Positives = 103/197 (52%), Gaps = 8/197 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + L+ G + +PTETVYGL + + A+ +Y++K+RP L +V+ + + Sbjct: 1 MDRIRQELEKGGAVILPTETVYGLFAKALDEKAVDHVYQLKRRPRDKALNLNVASLEDIL 60 Query: 72 KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P L L + F PGPLT++L+ + + ++L T FR+P T LI Sbjct: 61 HFSKNQPAYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIR 118 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL PSAN SGQ S + IL + + L D ++ G +STIV++ +K V Sbjct: 119 ETG-PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGDK-V 174 Query: 190 RILRPGGLEIETLKRAI 206 +ILR G ++ E + + Sbjct: 175 KILRQGAIKREDILARL 191 >gi|15640086|ref|NP_229713.1| Sua5/YciO/YrdC family protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587255|ref|ZP_01677028.1| Sua5/YciO/YrdC family protein [Vibrio cholerae 2740-80] gi|121727865|ref|ZP_01680924.1| Sua5/YciO/YrdC family protein [Vibrio cholerae V52] gi|147673407|ref|YP_001218359.1| Sua5/YciO/YrdC family protein [Vibrio cholerae O395] gi|153817585|ref|ZP_01970252.1| Sua5/YciO/YrdC family protein [Vibrio cholerae NCTC 8457] gi|153821951|ref|ZP_01974618.1| Sua5/YciO/YrdC family protein [Vibrio cholerae B33] gi|229508338|ref|ZP_04397842.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae BX 330286] gi|229508823|ref|ZP_04398314.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae B33] gi|229517094|ref|ZP_04406540.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae RC9] gi|229520239|ref|ZP_04409666.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae TM 11079-80] gi|229530161|ref|ZP_04419550.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae 12129(1)] gi|229606613|ref|YP_002877261.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae MJ-1236] gi|254851618|ref|ZP_05240968.1| Sua5/YciO/YrdC family protein [Vibrio cholerae MO10] gi|262155846|ref|ZP_06028968.1| YrdC family protein [Vibrio cholerae INDRE 91/1] gi|81545625|sp|Q9KVT5|RIMN_VIBCH RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|212288233|sp|A5F4C5|RIMN_VIBC3 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|9654448|gb|AAF93232.1| Sua5/YciO/YrdC family protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|18254364|gb|AAL66733.1| Sua5/YciO/YrdC family protein [Vibrio cholerae] gi|121548501|gb|EAX58557.1| Sua5/YciO/YrdC family protein [Vibrio cholerae 2740-80] gi|121629809|gb|EAX62224.1| Sua5/YciO/YrdC family protein [Vibrio cholerae V52] gi|126511853|gb|EAZ74447.1| Sua5/YciO/YrdC family protein [Vibrio cholerae NCTC 8457] gi|126520571|gb|EAZ77794.1| Sua5/YciO/YrdC family protein [Vibrio cholerae B33] gi|146315290|gb|ABQ19829.1| Sua5/YciO/YrdC family protein [Vibrio cholerae O395] gi|227011943|gb|ACP08153.1| Sua5/YciO/YrdC family protein [Vibrio cholerae O395] gi|229332294|gb|EEN97781.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae 12129(1)] gi|229342833|gb|EEO07824.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae TM 11079-80] gi|229346157|gb|EEO11129.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae RC9] gi|229354098|gb|EEO19030.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae B33] gi|229354611|gb|EEO19533.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae BX 330286] gi|229369268|gb|ACQ59691.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae MJ-1236] gi|254847323|gb|EET25737.1| Sua5/YciO/YrdC family protein [Vibrio cholerae MO10] gi|262030298|gb|EEY48940.1| YrdC family protein [Vibrio cholerae INDRE 91/1] Length = 188 Score = 172 bits (436), Expect = 7e-41, Method: Composition-based stats. Identities = 53/190 (27%), Positives = 86/190 (45%), Gaps = 10/190 (5%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 L++A + L G IA PTE V+GL D N TA+ RL IK+RP +I + + Sbjct: 5 ENLQQAVDALRKGCVIAYPTEGVFGLGCDPDNQTAMLRLLAIKQRPVEKGVILIAASYAQ 64 Query: 70 VKKHASVDPLSLHLA---KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 ++ + L+ WP PLT V+ ++ D T RV + Sbjct: 65 LRPYVDETQLTAEQLTQVLASWPAPLTWVMP--ASGDTPSWVRGQFDTVAVRVSDHPVVQ 122 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 KL +G PL SAN SGQ + + ++ + +I ++++G S S I + + Sbjct: 123 KLCLAFGKPLTSTSANLSGQPACVTQQEVMV-QLGNQIAVVVEGKTSGRHGPSEIRDARS 181 Query: 186 EKKVRILRPG 195 +++LR G Sbjct: 182 ---LQVLRQG 188 >gi|223932124|ref|ZP_03624128.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus suis 89/1591] gi|223899105|gb|EEF65462.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus suis 89/1591] Length = 200 Score = 172 bits (436), Expect = 8e-41, Method: Composition-based stats. Identities = 67/205 (32%), Positives = 109/205 (53%), Gaps = 9/205 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + K L+ G + +PTETVYGL + N A+ R+Y++K+RP + +VS+++ + Sbjct: 1 MDKLRTILENGGAVILPTETVYGLFAQALNEDAVNRVYQLKQRPRDKAMNLNVSNLNDIY 60 Query: 72 KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P L L F PGPLT++L + ++ + L T FR+P T +LI Sbjct: 61 FFSQNTPFFLEKLYNRFMPGPLTIIL--KANENVPFWVNSGLDTVGFRLPNHEQTLRLIS 118 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL PSAN SG S + + ++P I D + G++STI+++ +K Sbjct: 119 ETG-PLIGPSANISGNESGKKFSD-IQAQFSVDLPGIEDD-QALTGIDSTILDLSG-QKA 174 Query: 190 RILRPGGLEIETLKRAISVELEYCV 214 RILR G + E +++AI E+E+ V Sbjct: 175 RILRQGAISREEIQKAI-PEIEFEV 198 >gi|302023745|ref|ZP_07248956.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus suis 05HAS68] gi|330832778|ref|YP_004401603.1| putative translation factor (SUA5) [Streptococcus suis ST3] gi|329307001|gb|AEB81417.1| putative translation factor (SUA5) [Streptococcus suis ST3] Length = 202 Score = 172 bits (436), Expect = 8e-41, Method: Composition-based stats. Identities = 67/205 (32%), Positives = 109/205 (53%), Gaps = 9/205 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + K L+ G + +PTETVYGL + N A+ R+Y++K+RP + +VS+++ + Sbjct: 3 MDKLRTILENGGAVILPTETVYGLFAQALNEDAVNRVYQLKQRPRDKAMNLNVSNLNDIY 62 Query: 72 KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P L L F PGPLT++L + ++ + L T FR+P T +LI Sbjct: 63 FFSQNTPFFLEKLYNRFMPGPLTIIL--KANENVPFWVNSGLDTVGFRLPNHEQTLRLIS 120 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL PSAN SG S + + ++P I D + G++STI+++ +K Sbjct: 121 ETG-PLIGPSANISGNESGKKFSD-IQAQFSVDLPGIEDD-QALTGIDSTILDLSG-QKA 176 Query: 190 RILRPGGLEIETLKRAISVELEYCV 214 RILR G + E +++AI E+E+ V Sbjct: 177 RILRQGAISREEIQKAI-PEIEFEV 200 >gi|27573707|pdb|1KK9|A Chain A, Crystal Structure Of E. Coli Ycio Length = 221 Score = 172 bits (436), Expect = 8e-41, Method: Composition-based stats. Identities = 44/188 (23%), Positives = 76/188 (40%), Gaps = 4/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A E + G I PT++ Y L + A R+ I++ P + D+S Sbjct: 29 QRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAXERICRIRQLPDGHNFTLXCRDLS 88 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + ++ VD ++ L K PG T +L L KT RVP + L Sbjct: 89 ELSTYSFVDNVAFRLXKNNTPGNYTFILKGTKEVP-RRLLQEKRKTIGXRVPSNPIAQAL 147 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G P S G + + + K++ LII GG +T++++ + Sbjct: 148 LEALGEPXLSTSLXLPGSEFTESDPEEIKDRLEKQVDLIIHGGYLGQ-KPTTVIDLTDDT 206 Query: 188 KVRILRPG 195 V ++R G Sbjct: 207 PV-VVREG 213 >gi|315125143|ref|YP_004067146.1| double-stranded RNA-binding protein [Pseudoalteromonas sp. SM9913] gi|315013656|gb|ADT66994.1| double-stranded RNA-binding protein [Pseudoalteromonas sp. SM9913] Length = 187 Score = 172 bits (436), Expect = 8e-41, Method: Composition-based stats. Identities = 55/189 (29%), Positives = 83/189 (43%), Gaps = 7/189 (3%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 ++D ++L A L+ G I PTE VYGL D N A+ RL IK+RP LI Sbjct: 1 MSDLSSLSAAITSLEQGDVILYPTEAVYGLGCDPDNQQAVERLLSIKQRPVEKGLILIAD 60 Query: 66 DISMVKKHASVDPLSLH-LAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 + + K+ L + A +F WPG LT V+ +T T T RV Sbjct: 61 NYGQLLKYVDDAKLPMDKRADIFSSWPGALTWVMPAAKST--PKWLTGQFDTIAVRVTNH 118 Query: 123 F-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 K+L + +G PL SAN +GQ ++T++ +++ +D + STI Sbjct: 119 PTVKRLCQQFGKPLVSTSANLTGQATVTSIVEA-QQQFAEQVSFYVDEPLGGNTQPSTIK 177 Query: 182 NVQCEKKVR 190 + R Sbjct: 178 DAMTGNVFR 186 >gi|153802780|ref|ZP_01957366.1| Sua5/YciO/YrdC family protein [Vibrio cholerae MZO-3] gi|124121693|gb|EAY40436.1| Sua5/YciO/YrdC family protein [Vibrio cholerae MZO-3] Length = 188 Score = 172 bits (436), Expect = 8e-41, Method: Composition-based stats. Identities = 53/190 (27%), Positives = 86/190 (45%), Gaps = 10/190 (5%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 L++A + L G IA PTE V+GL D N TA+ RL IK+RP +I + + Sbjct: 5 ENLQQAVDALRKGCVIAYPTEGVFGLGCDPDNQTAMLRLLAIKQRPVEKGVILIAASYAQ 64 Query: 70 VKKHASVDPLSLHLA---KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 ++ + L+ WP PLT V+ ++ D T RV + Sbjct: 65 LRPYVDETQLTADQLTQVLASWPAPLTWVMP--ASGDTSSWVRGQFDTVAVRVSDHPVVQ 122 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 KL +G PL SAN SGQ + + ++ + +I ++++G S S I + + Sbjct: 123 KLCLAFGKPLTSTSANLSGQPACVTQQEVMV-QLGNQIAVVVEGKTSGRHGPSEIRDARS 181 Query: 186 EKKVRILRPG 195 +++LR G Sbjct: 182 ---LQVLRQG 188 >gi|115380236|ref|ZP_01467257.1| Sua5/YciO/YrdC/YwlC family protein [Stigmatella aurantiaca DW4/3-1] gi|310821629|ref|YP_003953987.1| sua5/ycio/yrdc/ywlc family protein [Stigmatella aurantiaca DW4/3-1] gi|115362760|gb|EAU61974.1| Sua5/YciO/YrdC/YwlC family protein [Stigmatella aurantiaca DW4/3-1] gi|309394701|gb|ADO72160.1| Sua5/YciO/YrdC/YwlC family protein [Stigmatella aurantiaca DW4/3-1] Length = 203 Score = 172 bits (436), Expect = 8e-41, Method: Composition-based stats. Identities = 56/194 (28%), Positives = 91/194 (46%), Gaps = 6/194 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A E L G +A PT+T YGL D + AI RLY++K R PL D+S Sbjct: 15 PRHVSRAVEVLSRGGLVAYPTDTYYGLGCDLASKKAIERLYQLKGRDKKKPLSFLCPDLS 74 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 V K+A V + K PG T +L+ +T + + + K RVP + L Sbjct: 75 DVAKYAHVSNFAYRTMKGLTPGAFTFILE--ATRIVPDMMMSRQKQVGIRVPDAPLARAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 G PL SA+ + + + + + + LI+DGG++ I ST+V++ + Sbjct: 133 AAGLGRPLVTTSASDEEGEPLIDARD-IKERLGHGLDLILDGGVTLI-EPSTVVSLIGD- 189 Query: 188 KVRILRPGGLEIET 201 + ILR G +++ Sbjct: 190 SIEILRQGKGQLDA 203 >gi|125623427|ref|YP_001031910.1| putative translation factor [Lactococcus lactis subsp. cremoris MG1363] gi|124492235|emb|CAL97164.1| putative translation factor [Lactococcus lactis subsp. cremoris MG1363] gi|300070174|gb|ADJ59574.1| putative translation factor [Lactococcus lactis subsp. cremoris NZ9000] Length = 306 Score = 172 bits (436), Expect = 9e-41, Method: Composition-based stats. Identities = 59/196 (30%), Positives = 99/196 (50%), Gaps = 8/196 (4%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 +A + L G + +PTETVYGL D+ N A+++LY +K RP L +VS + K Sbjct: 110 ARAVKALKNGQLVVLPTETVYGLFADAMNEQAVQKLYSVKGRPTEKALNMNVSSFEDILK 169 Query: 73 HASVDPLSLHLA-KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIET 130 ++ P L F PGPLT++L+ +++++ T FR+P T+K+I+ Sbjct: 170 YSINTPDYLRKIVDAFLPGPLTIILE--ASSEVPEWIHIGKSTVGFRMPNIAVTQKVIKE 227 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G L PSAN +G S + + + + D S GL++TI+++ EK + Sbjct: 228 VGV-LVGPSANLTGSKSPSFFADLSPEILENAAVAVQDD--SIYGLDTTIIDLTQEKP-K 283 Query: 191 ILRPGGLEIETLKRAI 206 +LR G + L + + Sbjct: 284 LLRQGAVTKAELLKKV 299 >gi|327470057|gb|EGF15521.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK330] Length = 196 Score = 172 bits (436), Expect = 9e-41, Method: Composition-based stats. Identities = 65/193 (33%), Positives = 103/193 (53%), Gaps = 8/193 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + K + L AG + +PTETVYGL + N A+ R+YE+K+RP L +V+ + + Sbjct: 1 MDKIEKTLAAGGAVVLPTETVYGLFAQALNQEAVERVYELKRRPRDKALNLNVASLEEIY 60 Query: 72 KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129 + P L L + F PGPLT++L + + + ++T FR+P T LI Sbjct: 61 AFSKNQPSYLKQLYQTFLPGPLTIILQ--ANDRVPTWINSGMETVGFRIPKHPVTLNLIR 118 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 YG PL PSAN SG+ S T+ + I+ +E+ + D + G +STI+++ EK + Sbjct: 119 KYG-PLIGPSANLSGKASGTSFQQIMMD-FQEEVSGVEDDA-ALTGQDSTILDLSGEKAL 175 Query: 190 RILRPGGLEIETL 202 ILR G + E + Sbjct: 176 -ILRQGAITREDI 187 >gi|254361757|ref|ZP_04977892.1| possible RNA-binding protein [Mannheimia haemolytica PHL213] gi|153093292|gb|EDN74288.1| possible RNA-binding protein [Mannheimia haemolytica PHL213] Length = 205 Score = 172 bits (436), Expect = 9e-41, Method: Composition-based stats. Identities = 46/188 (24%), Positives = 76/188 (40%), Gaps = 5/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A E + G I PT++ Y L + A+ R+ I+K P + SD+S Sbjct: 14 QRLINQAVEIIRNGGVIVYPTDSGYALGCAMGDKHAMDRIVAIRKLPENHNFTLVCSDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A V+ + L K P P T +L +T ++ KT RVP L Sbjct: 74 ELSIYALVNNQAYRLIKNNTPNPYTFILP--ATKELPRRLMTKRKTVGIRVPDNAIALAL 131 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I G P+ S + + + + LII GG +T+V++ + Sbjct: 132 ISALGEPILSCSLMLPETEMTESDPDEIRDHLQNRVDLIIHGGYLGQ-QPTTVVDLTDDV 190 Query: 188 KVRILRPG 195 V I+R G Sbjct: 191 PV-IIREG 197 >gi|308050243|ref|YP_003913809.1| translation factor SUA5 [Ferrimonas balearica DSM 9799] gi|307632433|gb|ADN76735.1| translation factor SUA5 [Ferrimonas balearica DSM 9799] Length = 206 Score = 172 bits (436), Expect = 9e-41, Method: Composition-based stats. Identities = 45/189 (23%), Positives = 76/189 (40%), Gaps = 4/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S + +A + G I PT++ Y L + +A+ R+ I++ + D+S Sbjct: 14 SRLINQAVATIHKGGVIVYPTDSGYALGCHIGDKSALERICRIRRLNEHHNFTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 + +A VD + L K PGP T + L A KT RVP L Sbjct: 74 ELSLYARVDNAAFRLLKNNTPGPYTFIFKGTKEVP-RRLLNAKRKTIGIRVPDNNIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G P+ S G+ + + + ++ LI+ GG +T+V+ E Sbjct: 133 LEALGEPMMSTSLILPGETLAESDPDDIRDKLEHQVDLILHGGFLGES-PTTVVDF-SEG 190 Query: 188 KVRILRPGG 196 + I+R G Sbjct: 191 EGEIVRVGA 199 >gi|238763131|ref|ZP_04624097.1| hypothetical protein ykris0001_40700 [Yersinia kristensenii ATCC 33638] gi|238698630|gb|EEP91381.1| hypothetical protein ykris0001_40700 [Yersinia kristensenii ATCC 33638] Length = 206 Score = 172 bits (436), Expect = 9e-41, Method: Composition-based stats. Identities = 41/192 (21%), Positives = 77/192 (40%), Gaps = 4/192 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ + L G + PT++ Y L + A+ R+ I++ + D+S Sbjct: 14 PRLINQSVDVLRKGGVVVYPTDSGYALGCRLEDKAAMERICRIRQLDGNHNFTLVCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD + L K PG T +L L KT RVP L Sbjct: 74 ELSTYAYVDNSAFRLIKNNTPGNYTFILKATKEVP-RRLMNDKRKTIGLRVPSNPIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ G PL + G + + ++ K++ LII GG S +T++++ + Sbjct: 133 LDVLGEPLMSTTLMLPGNDFAESDPEEIKENLGKQVDLIIHGG-SLGQQPTTVIDLT-DS 190 Query: 188 KVRILRPGGLEI 199 ++R G + Sbjct: 191 SPEVIREGAGDA 202 >gi|134296280|ref|YP_001120015.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia vietnamiensis G4] gi|134139437|gb|ABO55180.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia vietnamiensis G4] Length = 210 Score = 172 bits (436), Expect = 9e-41, Method: Composition-based stats. Identities = 50/193 (25%), Positives = 84/193 (43%), Gaps = 4/193 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A + + G IA+PT++ Y LA + A+ R+ I+ L V D+S Sbjct: 14 PRLVKQAADIVSKGGVIAMPTDSSYALACHLDDKDAVERVRRIRGLDEKQHLSLLVRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + A VD L K PGP +L LS + KT RVP T L Sbjct: 74 ELANFAMVDNRQYRLIKSVTPGPYVFILQATKEVP-RRLSHPSRKTIGLRVPDHAITLAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E+ G PL + N + + + K++ L+IDGG ST++++ + Sbjct: 133 LESLGQPLLGTTLILPPDDEPLNDPEDIRARLEKQVDLVIDGGACPR-EPSTVIDLTGDA 191 Query: 188 KVRILRPGGLEIE 200 +++R G +E Sbjct: 192 P-QLVRAGRGALE 203 >gi|307704779|ref|ZP_07641675.1| yrdC domain protein [Streptococcus mitis SK597] gi|307621688|gb|EFO00729.1| yrdC domain protein [Streptococcus mitis SK597] Length = 199 Score = 172 bits (436), Expect = 9e-41, Method: Composition-based stats. Identities = 60/197 (30%), Positives = 101/197 (51%), Gaps = 8/197 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + L+ G + +PTETVYGL + + A+ +Y++K+RP L ++ + + Sbjct: 1 MDRIRQELENGGAVVLPTETVYGLFAKALDEKAVNHVYQLKRRPRDKALNLNIDSLEDIL 60 Query: 72 KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P L L + F PGPLT++L+ + + + L T FR+P T LI Sbjct: 61 HFSKNQPTYLQKLVETFLPGPLTIILE--ANDRVPYWVNSGLATVGFRMPSHPITLDLIR 118 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL PSAN SGQ S + IL + + L D ++ G +STI+++ +K V Sbjct: 119 ETG-PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTILDLSGDK-V 174 Query: 190 RILRPGGLEIETLKRAI 206 +ILR G ++ E + + Sbjct: 175 KILRQGSIKREDILARL 191 >gi|84394230|ref|ZP_00992958.1| Putative translation factor [Vibrio splendidus 12B01] gi|84375144|gb|EAP92063.1| Putative translation factor [Vibrio splendidus 12B01] Length = 206 Score = 172 bits (436), Expect = 9e-41, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 76/189 (40%), Gaps = 3/189 (1%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A + G + PT++ Y L N A+ R+ +I++ + D+S Sbjct: 14 ARLIIQAVAIIRNGGVVVYPTDSGYALGCQLENKQALERICKIRRIDDKHNFTLLCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD ++ L K PG T + L A KT RVP L Sbjct: 74 ELSLYARVDNVAFRLLKAHTPGAYTFIFKATKEVP-KRLMNAKRKTIGIRVPDNKIALDL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL S G + + + S+ + +I++GG +T+++ + Sbjct: 133 LEAMGEPLMSTSLILPGNETTESDPEEIRDSLEHAVDVILNGGYLGE-QPTTVIDFSDDD 191 Query: 188 KVRILRPGG 196 V + R G Sbjct: 192 AVVLRRGAG 200 >gi|332360427|gb|EGJ38238.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK355] Length = 196 Score = 172 bits (436), Expect = 9e-41, Method: Composition-based stats. Identities = 66/193 (34%), Positives = 103/193 (53%), Gaps = 8/193 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + K + L AG + +PTETVYGL + N A+ R+YE+K+RP L +V+ + + Sbjct: 1 MDKIEKTLAAGGAVVLPTETVYGLFAQALNQEAVERVYELKRRPRDKALNLNVASLEEIY 60 Query: 72 KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129 + P L L + F PGPLT++L + + + ++T FR+P T LI Sbjct: 61 AFSKNQPSYLEQLYQAFLPGPLTIILQ--ANDRVPAWINSGMETVGFRIPKHPVTLDLIR 118 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 YG PL PSAN SG+ S T+ + I+ +E+ + D S G +STI+++ EK + Sbjct: 119 KYG-PLIGPSANLSGKASGTSFQRIMMD-FQEEVSGVEDDA-SLTGQDSTILDLSGEKAL 175 Query: 190 RILRPGGLEIETL 202 ILR G + E + Sbjct: 176 -ILRQGAITREDI 187 >gi|28899809|ref|NP_799414.1| Sua5/YciO/YrdC family protein [Vibrio parahaemolyticus RIMD 2210633] gi|153837692|ref|ZP_01990359.1| protein YrdC [Vibrio parahaemolyticus AQ3810] gi|260362026|ref|ZP_05775031.1| Sua5/YciO/YrdC family protein [Vibrio parahaemolyticus K5030] gi|260876487|ref|ZP_05888842.1| Sua5/YciO/YrdC family protein [Vibrio parahaemolyticus AN-5034] gi|260897456|ref|ZP_05905952.1| Sua5/YciO/YrdC family protein [Vibrio parahaemolyticus Peru-466] gi|260901347|ref|ZP_05909742.1| Sua5/YciO/YrdC family protein [Vibrio parahaemolyticus AQ4037] gi|81726622|sp|Q87KE2|RIMN_VIBPA RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|28808061|dbj|BAC61298.1| Sua5/YciO/YrdC family protein [Vibrio parahaemolyticus RIMD 2210633] gi|149748982|gb|EDM59809.1| protein YrdC [Vibrio parahaemolyticus AQ3810] gi|308087914|gb|EFO37609.1| Sua5/YciO/YrdC family protein [Vibrio parahaemolyticus Peru-466] gi|308090420|gb|EFO40115.1| Sua5/YciO/YrdC family protein [Vibrio parahaemolyticus AN-5034] gi|308109865|gb|EFO47405.1| Sua5/YciO/YrdC family protein [Vibrio parahaemolyticus AQ4037] gi|308114150|gb|EFO51690.1| Sua5/YciO/YrdC family protein [Vibrio parahaemolyticus K5030] gi|328471159|gb|EGF42061.1| Sua5/YciO/YrdC family protein [Vibrio parahaemolyticus 10329] Length = 185 Score = 171 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 44/185 (23%), Positives = 76/185 (41%), Gaps = 7/185 (3%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + + L G IA PTE V+G+ D NP AI++L ++K+RP LI + Sbjct: 2 DNFEQVLNALQQGEVIAYPTEGVFGVGCDPDNPDAIQKLLDLKQRPVEKGLILIAASYEQ 61 Query: 70 VKKHASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + + P L WPGP T ++ ++ + + + RV + Sbjct: 62 LLPYIDESQLTPEQLATVHATWPGPYTWIMP--ASDKVSNWVSGQFDSIAVRVTDHPLVQ 119 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 K+ +G PL SAN SG + + + ++ I+ G S S I + + Sbjct: 120 KMCNAFGKPLTSTSANLSGLPPCMTTEEV-EQQLGDKLVAILRGETSGRDKPSEIRDAKT 178 Query: 186 EKKVR 190 + +R Sbjct: 179 SQILR 183 >gi|238788419|ref|ZP_04632212.1| hypothetical protein yfred0001_830 [Yersinia frederiksenii ATCC 33641] gi|238723332|gb|EEQ14979.1| hypothetical protein yfred0001_830 [Yersinia frederiksenii ATCC 33641] Length = 206 Score = 171 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 41/192 (21%), Positives = 77/192 (40%), Gaps = 4/192 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ + L G + PT++ Y L + +A+ R+ I++ + D+S Sbjct: 14 PRLINQSVDVLRKGGVVVYPTDSGYALGCRLEDKSAMERICRIRQLDGNHNFTLVCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD + L K PG T +L L KT RVP L Sbjct: 74 ELSTYAYVDNSAFRLIKNNTPGNYTFILKATKEVP-RRLMNDKRKTIGLRVPSNPIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ G PL + G + + + K++ LII GG S +T++++ + Sbjct: 133 LDVLGEPLMSTTLMLPGNDFAESDPEEIKEHLGKQVDLIIHGG-SLGQQPTTVIDLT-DS 190 Query: 188 KVRILRPGGLEI 199 ++R G + Sbjct: 191 SPEVIREGAGDA 202 >gi|114319880|ref|YP_741563.1| translation factor SUA5 [Alkalilimnicola ehrlichii MLHE-1] gi|114226274|gb|ABI56073.1| translation factor SUA5 [Alkalilimnicola ehrlichii MLHE-1] Length = 207 Score = 171 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 50/205 (24%), Positives = 87/205 (42%), Gaps = 5/205 (2%) Query: 1 MQIMSITDS-NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 +I +T +++ E + AG IA PT++ Y L A+ R+ +I++ + Sbjct: 5 FEIHPVTPQVRLVKRTVEIIRAGGVIAYPTDSSYALGCGIGEKQAVDRIRQIRRLREDHN 64 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 D+S + +A V+ + L K PGP T +L S L KT RV Sbjct: 65 FTLACRDLSDIGTYARVENYAYRLLKSHTPGPYTFILKATSKVP-RLLQHPKKKTIGIRV 123 Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P T+ ++E G PL S + +++ ++ +IDGG + S Sbjct: 124 PDHPTTQAILEELGEPLMTVSLIMPDDDMPITDPVDIRAALEHQVDAVIDGGPGGL-EPS 182 Query: 179 TIVNVQCEKKVRILRPGGLEIETLK 203 T+V++ E R+LR G + + Sbjct: 183 TVVDLSGEAP-RVLREGAGDPSVFE 206 >gi|319441090|ref|ZP_07990246.1| hypothetical protein CvarD4_04907 [Corynebacterium variabile DSM 44702] Length = 218 Score = 171 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 54/199 (27%), Positives = 82/199 (41%), Gaps = 5/199 (2%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVD 77 + G I +PT+TVYG+ D+ + A+ L K R P V V D Sbjct: 24 VKGGRLIVMPTDTVYGIGADAFDNDAVAALLVAKHRGPDYPTPVVVGSWDTVTGLVRDAD 83 Query: 78 PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAI 137 L + FWPG LT+V + + T T R+P + P+A+ Sbjct: 84 ARMKALVEAFWPGGLTIVTHQAPSLPWNLGDT--RGTVALRMPLHPVAIELLQQTGPMAL 141 Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197 SAN GQ S + + + + +DGG + IG STIV++ ++ RILR G + Sbjct: 142 SSANVHGQPSALSAAQA-REQLGDSVSVYLDGGPATIGTSSTIVDLSG-RRPRILRHGAI 199 Query: 198 EIETLKRAISVELEYCVDE 216 E + + V E Sbjct: 200 EAARVAEVLGVPEESLTQG 218 >gi|91217342|ref|ZP_01254302.1| putative Sua5/yciO/yrdC family protein [Psychroflexus torquis ATCC 700755] gi|91184450|gb|EAS70833.1| putative Sua5/yciO/yrdC family protein [Psychroflexus torquis ATCC 700755] Length = 205 Score = 171 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 49/207 (23%), Positives = 90/207 (43%), Gaps = 13/207 (6%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 +++ I + N L++ + L G + PT+TVYGL D N A+ ++ IK Sbjct: 3 ELIRIYEENPSEKELKRIVKILKKGGLVIYPTDTVYGLGCDINNTKALEKIARIKGIKLE 62 Query: 58 NP-LICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115 D+S + ++ A +D + + K PGP T +L + P KT Sbjct: 63 KANFSFVCQDLSNLSEYVAQLDSTTFKILKRNLPGPYTFILPGNNKL---PSVFKKKKTV 119 Query: 116 CFRVPCG-FTKKLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISK 173 RVP + L++ G+P+ S I T +++ K + ++IDGG Sbjct: 120 GIRVPNNKIVQLLVQHLGNPIISTSIRDEDDVIEYTTDPELIAEKWGKLVDVVIDGGFGD 179 Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIE 200 + ST+ ++ E + +++R G + Sbjct: 180 -NVASTVFDLT-ETEPKLIRQGKGSAD 204 >gi|89074767|ref|ZP_01161225.1| Putative Sua5/YciO/YrdC family protein [Photobacterium sp. SKA34] gi|89049531|gb|EAR55092.1| Putative Sua5/YciO/YrdC family protein [Photobacterium sp. SKA34] Length = 185 Score = 171 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 42/185 (22%), Positives = 69/185 (37%), Gaps = 7/185 (3%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + L G I PTE V+G+ D N A+ +L IK+RP LI ++ Sbjct: 2 ENFAQVVAALKQGEVIGYPTEAVFGVGCDPDNQDAVEKLLAIKQRPVEKGLILIAANYDQ 61 Query: 70 VKKHASVDPLSLHLAK---LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + + L+ + WPGP+T V+ ++ T T RV + Sbjct: 62 LLSYIDESQLTEQQKQTVMATWPGPVTWVMPTKP--NVPSFLTGQFTTIAVRVSDHPLVQ 119 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +L +G P+ SAN +GQ + + + + I+ G S I + Sbjct: 120 RLCLEFGKPITSTSANLTGQEPGRTAQEV-EQQLGHCLAAILQGETGGRTNPSEIRDALN 178 Query: 186 EKKVR 190 R Sbjct: 179 GNIFR 183 >gi|127514658|ref|YP_001095855.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella loihica PV-4] gi|212288223|sp|A3QJE8|RIMN_SHELP RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|126639953|gb|ABO25596.1| translation factor SUA5 [Shewanella loihica PV-4] Length = 185 Score = 171 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 52/187 (27%), Positives = 82/187 (43%), Gaps = 10/187 (5%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D AL E + G IA PTE VYGL D N AI++L ++K+RP LI SD Sbjct: 5 DPAAL---VETVLQGGVIAYPTEAVYGLGCDPDNDEAIQKLLDLKQRPWQKGLILVASDF 61 Query: 68 SMVKKHASVDPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF- 123 + + + L+ L F WPGP T ++ + L + + RV Sbjct: 62 NQLTPYIDSSVLTEAQLQSAFDKWPGPFTFIMPKRPG--LSSLLSGQFDSLAVRVSNHPG 119 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + L + G P+ SAN +G+ + ++ +I ++ G + STI++V Sbjct: 120 VQALCQALGKPIVSTSANLTGEEPALTPEEVIR-QFDGKIDGLVAGSLGAEPKPSTIIDV 178 Query: 184 QCEKKVR 190 K +R Sbjct: 179 ISGKILR 185 >gi|194397422|ref|YP_002037657.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae G54] gi|194357089|gb|ACF55537.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae G54] Length = 200 Score = 171 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 61/197 (30%), Positives = 103/197 (52%), Gaps = 8/197 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + L+ G + +PTETVYGL + + A+ +Y++K+RP L +++ + + Sbjct: 2 MDRIRQELEKGGAVILPTETVYGLFAKALDEKAVDHVYQLKRRPRDKALNLNIASLEDIL 61 Query: 72 KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P L L + F PGPLT++L+ + + ++L T FR+P T LI Sbjct: 62 HFSKNQPAYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIR 119 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL PSAN SGQ S + IL + + L D ++ G +STIV++ +K V Sbjct: 120 ETG-PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGDK-V 175 Query: 190 RILRPGGLEIETLKRAI 206 +ILR G ++ E + + Sbjct: 176 KILRQGAIKREDILARL 192 >gi|319936647|ref|ZP_08011060.1| hypothetical protein HMPREF9488_01893 [Coprobacillus sp. 29_1] gi|319808204|gb|EFW04769.1| hypothetical protein HMPREF9488_01893 [Coprobacillus sp. 29_1] Length = 200 Score = 171 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 56/204 (27%), Positives = 102/204 (50%), Gaps = 7/204 (3%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 + + + + C ++ +A PTETVYG+ V + A+ +L E K R + V Sbjct: 3 KVVSVDEIEEVCNIIECNGVVAFPTETVYGVGVKFGSKIALDKLMEAKNRDYSKAITLMV 62 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 +D ++K+A V + + + F PG +TLV T D P+ T +T R+P + Sbjct: 63 ADEKDIEKYAFVSDDAKKIVQAFMPGMITLVFKKKDTVD--PIMTNGKETIGIRIPDDQY 120 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 L++ G P+ + SAN S + T+ K +L+ + I L++DG + + ST+V+V Sbjct: 121 VLTLLKKAG-PMLVTSANLSNHPNTTSTKEVLN-QLDGRIDLVVDG-QTTDNVASTVVDV 177 Query: 184 QCEKKVRILRPGGLEIETLKRAIS 207 +++ILR G + E ++ + Sbjct: 178 -SRNEMKILREGKITKEDIQEVLK 200 >gi|238794708|ref|ZP_04638312.1| hypothetical protein yinte0001_18120 [Yersinia intermedia ATCC 29909] gi|238725939|gb|EEQ17489.1| hypothetical protein yinte0001_18120 [Yersinia intermedia ATCC 29909] Length = 206 Score = 171 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 41/192 (21%), Positives = 76/192 (39%), Gaps = 4/192 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ + L G + PT++ Y L + A+ R+ I++ + D+S Sbjct: 14 PRLINQSVDVLRKGGVVVYPTDSGYALGCRLEDKAAMERICRIRQLDGNHNFTLVCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD + L K PG T +L L KT RVP L Sbjct: 74 ELSTYAYVDNSAFRLIKNNTPGNYTFILKATKEVP-RRLMNDKRKTIGLRVPSNPIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ G PL + G + + + K++ LII GG S +T++++ + Sbjct: 133 LDVLGEPLMSTTLMLPGNDFAESDPEEIKDHLGKQVDLIIHGG-SLGQQPTTVIDLT-DS 190 Query: 188 KVRILRPGGLEI 199 ++R G + Sbjct: 191 SPEVIREGAGDA 202 >gi|257386952|ref|YP_003176725.1| Sua5/YciO/YrdC/YwlC family protein [Halomicrobium mukohataei DSM 12286] gi|257169259|gb|ACV47018.1| Sua5/YciO/YrdC/YwlC family protein [Halomicrobium mukohataei DSM 12286] Length = 193 Score = 171 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 54/198 (27%), Positives = 96/198 (48%), Gaps = 8/198 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + L +A + +D G + PTETVYGLA D+ +P A++R++++K R P+ V + Sbjct: 2 SDLDRAADAIDDGELVIYPTETVYGLAGDALDPDAVQRVFDVKGRDRSKPVSLAVPSVDA 61 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129 + L + F PGP+T++ + + + TA RVP + Sbjct: 62 ATDYTEPSERELAFMRAFLPGPVTVLARRRPS--VPDVLTAGRDRVGIRVPDHELALALL 119 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+ SAN SG+ S V + S+ + +++DGG + G EST+V+V ++ V Sbjct: 120 ERVAPITSTSANVSGEQSARTVDE-IGESVREGTAVVLDGGRTP-GTESTVVDVAADEIV 177 Query: 190 RILRPGGLEIETLKRAIS 207 R G + E ++ ++ Sbjct: 178 RE----GADCEAIREWLA 191 >gi|77359010|ref|YP_338585.1| double-stranded RNA-binding protein [Pseudoalteromonas haloplanktis TAC125] gi|123587103|sp|Q3IDH7|RIMN_PSEHT RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|76873921|emb|CAI85142.1| putative double-stranded RNA-binding protein with unique protein fold, with YrdC/RibB domain [Pseudoalteromonas haloplanktis TAC125] Length = 187 Score = 171 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 54/189 (28%), Positives = 80/189 (42%), Gaps = 7/189 (3%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 ++D + + A L G I PTE VYGL D N A+ RL IK+RP LI Sbjct: 1 MSDQSTIAAAITCLAQGEVILYPTEAVYGLGCDPDNQQAVERLLAIKQRPVEKGLILIAD 60 Query: 66 DISMVKKHASVDPLSLH-LAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 + + K+ + + A +F WP +T V+ T T T RV Sbjct: 61 NYGQLLKYVDDAKIPMDKRADIFSSWPNAITWVMPAAKNT--PKWLTGQYDTIAVRVTNH 118 Query: 123 F-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 K+L + +G PL SAN SGQ ++ ++ S ++I +D + STI Sbjct: 119 PTVKRLCQEFGKPLVSTSANLSGQNTVLSIAEA-KSQFTEQIGYYVDEPLGGNTQPSTIK 177 Query: 182 NVQCEKKVR 190 + K R Sbjct: 178 DAMNGKVFR 186 >gi|107102729|ref|ZP_01366647.1| hypothetical protein PaerPA_01003796 [Pseudomonas aeruginosa PACS2] gi|218890608|ref|YP_002439472.1| putative SUA5/yciO/yrdC family:Sua5/YciO/YrdC/YwlC protein family [Pseudomonas aeruginosa LESB58] gi|218770831|emb|CAW26596.1| putative SUA5/yciO/yrdC family:Sua5/YciO/YrdC/YwlC protein family [Pseudomonas aeruginosa LESB58] Length = 209 Score = 171 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 48/189 (25%), Positives = 79/189 (41%), Gaps = 4/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E + G I PT++ Y L TA+ R+ I++ + D+S Sbjct: 14 PRLVKQAVEIVRQGGVIVYPTDSSYALGCRIGEKTAVDRIRRIRQLDDKHNFTLVCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD L K PGP T +L L +T RVP C + L Sbjct: 74 ELGVYAKVDTGLFRLLKAHTPGPYTFILSATREVP-RMLLHPKRRTIGLRVPNCPIARAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL S G+ N + + + ++ LI+DGG G ST++++ Sbjct: 133 LEELGEPLMSVSLIMPGRGEPLNDPYEMRQVLEHQVDLIVDGGYGG-GEASTVISLTDTD 191 Query: 188 KVRILRPGG 196 ++R G Sbjct: 192 P-EVIRVGC 199 >gi|322833322|ref|YP_004213349.1| Sua5/YciO/YrdC/YwlC family protein [Rahnella sp. Y9602] gi|321168523|gb|ADW74222.1| Sua5/YciO/YrdC/YwlC family protein [Rahnella sp. Y9602] Length = 206 Score = 171 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 47/189 (24%), Positives = 76/189 (40%), Gaps = 4/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A E L G I PT++ Y L A+ R+ I++ + + D+S Sbjct: 14 PRLINQAVELLRKGQVIVYPTDSGYALGCRLEEKNAMERICRIRQLDSNHNFTLVCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD + L K PG T +L L + KT RVP L Sbjct: 74 ELSTYAYVDNAAFRLMKNNTPGNYTFILKATKEVP-RRLMSEKRKTIGLRVPSNPIAIAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL + G + + + K + L+IDGG S +T+V++ E Sbjct: 133 LEALGEPLMSTTLMLPGNDFAESDPEDIKDHLGKVVDLVIDGG-SIGQQPTTVVDLT-EA 190 Query: 188 KVRILRPGG 196 ++R G Sbjct: 191 APEVVREGA 199 >gi|261494041|ref|ZP_05990544.1| putative RNA-binding protein [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496198|ref|ZP_05992604.1| putative RNA-binding protein [Mannheimia haemolytica serotype A2 str. OVINE] gi|261308150|gb|EEY09447.1| putative RNA-binding protein [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310207|gb|EEY11407.1| putative RNA-binding protein [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 205 Score = 171 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 46/188 (24%), Positives = 76/188 (40%), Gaps = 5/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A E + G I PT++ Y L + A+ R+ I+K P + SD+S Sbjct: 14 QRLINQAVEIIRNGGVIVYPTDSGYALGCAMGDKHAMDRIVAIRKLPENHNFTLVCSDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A V+ + L K P P T +L +T ++ KT RVP L Sbjct: 74 ELSIYALVNNQAYRLIKNNTPNPYTFILP--ATKELPRRLMTKRKTVGIRVPDNAIALAL 131 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I G P+ S + + + + LII GG +T+V++ + Sbjct: 132 ISALGEPILSCSLMLPETEMTESDPDEIRDHLQNRVDLIIHGGYLGQ-QPTTVVDLTDDV 190 Query: 188 KVRILRPG 195 V I+R G Sbjct: 191 PV-IIREG 197 >gi|229524955|ref|ZP_04414360.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae bv. albensis VL426] gi|229338536|gb|EEO03553.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae bv. albensis VL426] Length = 188 Score = 171 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 53/190 (27%), Positives = 86/190 (45%), Gaps = 10/190 (5%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 L++A + L G IA PTE V+GL D N TA+ RL IK+RP +I + + Sbjct: 5 ENLQQAVDALRKGCVIAYPTEGVFGLGCDPDNQTAMLRLLAIKQRPVEKGVILIAASYAQ 64 Query: 70 VKKHASVDPLSLHLA---KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 ++ + L+ WP PLT V+ ++ D T RV + Sbjct: 65 LRPYVDETQLTADQLTQVLASWPAPLTWVMP--ASGDTPSWIRGQFDTVAVRVSDHPVVQ 122 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 KL +G PL SAN SGQ + + ++ + +I ++++G S S I + + Sbjct: 123 KLCLAFGKPLTSTSANLSGQPACVTQQEVMV-QLGNQIAVVVEGKTSGRHGPSEIRDARS 181 Query: 186 EKKVRILRPG 195 +++LR G Sbjct: 182 ---LQVLRQG 188 >gi|170699294|ref|ZP_02890343.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia ambifaria IOP40-10] gi|170135786|gb|EDT04065.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia ambifaria IOP40-10] Length = 210 Score = 171 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 50/193 (25%), Positives = 83/193 (43%), Gaps = 4/193 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A + + G IAIPT++ Y LA + A+ R+ I+ L V D+S Sbjct: 14 PRLIKQAADIVSKGGVIAIPTDSSYALACHLDDKDAVERVRRIRGLDEKQHLSLLVRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + A VD K PGP +L LS + KT RVP T L Sbjct: 74 ELANFAMVDNRQYRQIKSVTPGPYVFILQATKEVP-RRLSHPSRKTIGLRVPDHAITLAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E+ G PL + N + + + K++ L+IDGG ST++++ ++ Sbjct: 133 LESLGQPLLGTTLILPPDDEPLNDPEDIRARLEKQVDLVIDGGACPR-EPSTVIDLTGDE 191 Query: 188 KVRILRPGGLEIE 200 +++R G E Sbjct: 192 P-QLVRAGRGAPE 203 >gi|322435977|ref|YP_004218189.1| Sua5/YciO/YrdC/YwlC family protein [Acidobacterium sp. MP5ACTX9] gi|321163704|gb|ADW69409.1| Sua5/YciO/YrdC/YwlC family protein [Acidobacterium sp. MP5ACTX9] Length = 214 Score = 171 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 62/212 (29%), Positives = 101/212 (47%), Gaps = 10/212 (4%) Query: 2 QIMSIT----DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 +I+ I + + +++GL +A+PT+T YGLAVD N A+ R+Y +K R Sbjct: 4 EILRINPDEPEPALVDYIAGRIESGLLVALPTDTFYGLAVDPVNLRAVERIYHLKNRARH 63 Query: 58 NPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 PL ++D++ A D LA+ FWPGPLT+++ S + TAN Sbjct: 64 KPLSLLIADVAQAYGLARECDTAFDRLAERFWPGPLTIIVKAGSKLPLR--VTANTGNVA 121 Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 RVP + ++ G P+ SAN G T+ + + +IPLI+DGG + Sbjct: 122 LRVPEAPIARAVVAKLGLPITATSANLEGHAECTSASGV-REQLGDKIPLIVDGGPTART 180 Query: 176 LESTIVNVQCEK-KVRILRPGGLEIETLKRAI 206 + +TIV++ ILR G + + + Sbjct: 181 VATTIVDLSGGGNSWTILREGAIPTHEIALCL 212 >gi|123442466|ref|YP_001006445.1| hypothetical protein YE2207 [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122089427|emb|CAL12275.1| conserved hypothetical protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 206 Score = 171 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 76/189 (40%), Gaps = 4/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ + L G + PT++ Y L + TA+ R+ I++ + D+S Sbjct: 14 PRLINQSVDVLRKGGVVVYPTDSGYALGCRLEDKTAMERICRIRQLDGNHNFTLVCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD + L K PG T +L L KT RVP L Sbjct: 74 ELSTYAYVDNPAFRLIKNNTPGNYTFILKATKEVP-RRLMNDKRKTIGLRVPSNPIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ G PL + G + + + K++ LII GG S +T++++ + Sbjct: 133 LDVLGEPLMSTTLMLPGNDFAESDPEEIKEYLGKQVDLIIHGG-SLGQQPTTVIDLT-DS 190 Query: 188 KVRILRPGG 196 ++R G Sbjct: 191 SPEVIREGA 199 >gi|300312576|ref|YP_003776668.1| translation factor SUA5 [Herbaspirillum seropedicae SmR1] gi|300075361|gb|ADJ64760.1| translation factor (SUA5) protein [Herbaspirillum seropedicae SmR1] Length = 211 Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats. Identities = 45/185 (24%), Positives = 82/185 (44%), Gaps = 3/185 (1%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A + + G +A+PT++ Y L N A+ R+ I+ + L D+S + Sbjct: 17 IKQAAQIIHKGGLVALPTDSCYALVCQLDNKDAVERVRRIRGVDEKHHLTLLCRDLSEIA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130 ++A VD L K PG T +L+ LS + KT RVP L+E Sbjct: 77 QYAKVDNRQYRLLKAATPGAYTFILEATKEVP-RRLSHPSRKTIGLRVPENRIAHMLLEE 135 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G PL + + S + K+I L+ID G + +T++++ +++ Sbjct: 136 LGQPLLGTTLILPDDDLPLTSAEDIRSHLEKQIDLVIDSGACSL-EPTTVIDLTDDEQPV 194 Query: 191 ILRPG 195 ++R G Sbjct: 195 LVRQG 199 >gi|315613127|ref|ZP_07888037.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus sanguinis ATCC 49296] gi|315314689|gb|EFU62731.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus sanguinis ATCC 49296] Length = 200 Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats. Identities = 60/193 (31%), Positives = 100/193 (51%), Gaps = 8/193 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + L+ G + +PTETVYGL + + A+ +Y++K+RP L +V+ + + Sbjct: 2 MDRIRQELEKGGAVVLPTETVYGLFAKALDEKAVDHVYQLKRRPREKALNLNVASLEDIL 61 Query: 72 KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P L L + F PGPLT++L+ + + + + T FR+P T LI Sbjct: 62 HFSKNQPTYLQKLVEAFLPGPLTIILE--ANDRVPYWVNSGIATVGFRMPSHPITLDLIR 119 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL PSAN SGQ S IL + + L D ++ G +STI+++ +K V Sbjct: 120 ETG-PLIGPSANISGQASGVTFAQILEDFDQEVLGLEDDAFLT--GQDSTILDLSGDK-V 175 Query: 190 RILRPGGLEIETL 202 +ILR G ++ E + Sbjct: 176 KILRQGAIKREDI 188 >gi|222478840|ref|YP_002565077.1| Sua5/YciO/YrdC/YwlC family protein [Halorubrum lacusprofundi ATCC 49239] gi|222451742|gb|ACM56007.1| Sua5/YciO/YrdC/YwlC family protein [Halorubrum lacusprofundi ATCC 49239] Length = 199 Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats. Identities = 58/200 (29%), Positives = 97/200 (48%), Gaps = 8/200 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D++ LR+A E + G + PTETVYGL D+ +PTA+ R++++K R NPL V + Sbjct: 4 DTDTLRRAAEAVADGDLVVYPTETVYGLGGDALDPTAVERVFDLKGRERSNPLSLGVPSV 63 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 ++ ++ A+ F PGP+T+V++ + TA RVP + Sbjct: 64 DAALRYTKPTEFAVAFARAFLPGPVTVVVER--GDPVPDALTAGSDRVGVRVPDHPIARD 121 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + PL SAN SG+ S+T+ L I + + ++ID G + G EST+V+ Sbjct: 122 LLRETGPLTATSANVSGRGSVTH-PDDLDDRIREGVAVVIDDGETP-GTESTVVD----P 175 Query: 188 KVRILRPGGLEIETLKRAIS 207 R + G ++ + Sbjct: 176 DARTIHRRGAMAGAIEAWLD 195 >gi|310767749|gb|ADP12699.1| conserved uncharacterized protein [Erwinia sp. Ejp617] Length = 206 Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats. Identities = 46/196 (23%), Positives = 80/196 (40%), Gaps = 4/196 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E L+ G I PT++ Y L + +A+ R+ I++ + D+S Sbjct: 14 PRLIKQAVEMLNKGSVIVYPTDSGYALGCKLEDKSAMERICRIRQLDGNHNFTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD + L K PG T +L L + KT RVP L Sbjct: 74 ELSTYAYVDNTAFRLIKNNTPGNYTFILKATKEVP-RRLMSEKRKTIGLRVPSNPIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E P+ S G + + I K + LII GG +T++++ E Sbjct: 133 LEALNEPMMSTSLMLPGNDFTESDPEAIQDEIGKLVDLIIHGGYLGQ-QPTTVIDLT-EV 190 Query: 188 KVRILRPGGLEIETLK 203 ++R G +I+ + Sbjct: 191 APEVVREGVGDIQPFR 206 >gi|153004978|ref|YP_001379303.1| Sua5/YciO/YrdC/YwlC family protein [Anaeromyxobacter sp. Fw109-5] gi|152028551|gb|ABS26319.1| Sua5/YciO/YrdC/YwlC family protein [Anaeromyxobacter sp. Fw109-5] Length = 235 Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats. Identities = 51/195 (26%), Positives = 93/195 (47%), Gaps = 6/195 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A L +G +A PT+T YGL D + AI R+Y++K+ P + L D++ Sbjct: 44 PRVVERAVSVLSSGGLLAFPTDTYYGLGCDLFDKRAIERIYQLKQLPRSHELSFICQDLA 103 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 + ++A VD + + + PGP T +L +T + L KT R+P ++ Sbjct: 104 EISRYAIVDNAAYRVLRRKVPGPYTFILP--ATRLVPDLVLRRQKTVGIRIPDSPIALEI 161 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + GHPL SA G + + H + + + L++DGG S+++++ + Sbjct: 162 VRRLGHPLISTSAATPGGEVLIDA-HDIKEQLGHGLDLVLDGGYKP-NEPSSVIDLSGAE 219 Query: 188 KVRILRPGGLEIETL 202 R+LR G ++ L Sbjct: 220 P-RVLRAGKGDVSDL 233 >gi|37526349|ref|NP_929693.1| hypothetical protein plu2456 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36785780|emb|CAE14830.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 206 Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats. Identities = 42/192 (21%), Positives = 78/192 (40%), Gaps = 4/192 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ + L G + PT++ Y + + ++ R+ I++ + + D+S Sbjct: 14 PRLIGQSVDMLKKGGVVIYPTDSGYAIGCHLEDKDSMTRICRIRQLDSHHNFTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD + L K PG T +L L KT RVP L Sbjct: 74 EISTYAYVDNSAFRLIKNNTPGNYTFILRATKEVP-RRLMNDKRKTIGLRVPSNPIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL S G + + ++ K++ LII GG +T++++ + Sbjct: 133 LEQVGEPLMSTSLILPGNDFAESDPEEIKDNLGKQVDLIIHGGYLGQ-QPTTVIDLTEDT 191 Query: 188 KVRILRPGGLEI 199 V ++R G I Sbjct: 192 PV-VIREGAGNI 202 >gi|116749551|ref|YP_846238.1| Sua5/YciO/YrdC/YwlC family protein [Syntrophobacter fumaroxidans MPOB] gi|116698615|gb|ABK17803.1| translation factor SUA5 [Syntrophobacter fumaroxidans MPOB] Length = 204 Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats. Identities = 49/189 (25%), Positives = 84/189 (44%), Gaps = 5/189 (2%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 + ++K E L G IA PT+T YG+ D N +I R+Y +K+R P +D+ Sbjct: 11 EPRKIQKIVEVLANGGIIAYPTDTYYGIGCDLFNKASIERIYLMKRRSPQQPFSFICNDL 70 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + ++A V + K PGP T VL+ + + + +T RVP Sbjct: 71 KNISEYAQVTNYAYKTMKRLLPGPYTFVLE--GSRLVPKIMLTKRQTVGIRVPDNPICLA 128 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 +++ GHP+ SA I + + + LI+DGG G S+++++ + Sbjct: 129 IVQELGHPIISTSATNPETNQILASPQEIKEILGHTLDLIVDGGNV-SGKPSSVISLIDD 187 Query: 187 KKVRILRPG 195 +LR G Sbjct: 188 SP-EVLRVG 195 >gi|152987724|ref|YP_001347308.1| hypothetical protein PSPA7_1927 [Pseudomonas aeruginosa PA7] gi|150962882|gb|ABR84907.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7] Length = 209 Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats. Identities = 48/189 (25%), Positives = 78/189 (41%), Gaps = 4/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E + G I PT++ Y L TA+ R+ I++ + D+S Sbjct: 14 PRLVKQAVEIVRQGGVIVYPTDSSYALGCRIGEKTAVDRIRRIRQLDDKHNFTLVCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD L K PGP T +L L +T RVP C + L Sbjct: 74 ELGVYAKVDTGLFRLLKAHTPGPYTFILSATREVP-RMLLHPKRRTIGLRVPNCPIARAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL S G N + + + ++ LI+DGG G ST++++ Sbjct: 133 LEELGEPLMSVSLIMPGSSEPLNDPYEMRQVLEHQVDLIVDGGYGG-GEASTVISLTDTD 191 Query: 188 KVRILRPGG 196 ++R G Sbjct: 192 P-EVIRVGC 199 >gi|323351593|ref|ZP_08087247.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis VMC66] gi|322122079|gb|EFX93805.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis VMC66] Length = 196 Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats. Identities = 64/193 (33%), Positives = 102/193 (52%), Gaps = 8/193 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + K + L A + +PTETVYGL + N A+ R+YE+K+RP L +V+ + + Sbjct: 1 MDKIEKILAASGAVVLPTETVYGLFAQALNEEAVERVYELKRRPRDKALNLNVASLEEIY 60 Query: 72 KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129 + P L L + F PGPLT++L + + + ++T FR+P T LI Sbjct: 61 AFSKKQPSYLKQLYQAFLPGPLTIILQ--ANDRVPTWINSGMETVGFRIPKHPVTLDLIR 118 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 YG PL PSAN SG+ S T+ + I+ +E+ + D + G +STI+++ EK + Sbjct: 119 KYG-PLIGPSANLSGKASGTSFQQIMMD-FQEEVSGVEDDA-TLTGQDSTILDLSGEKAL 175 Query: 190 RILRPGGLEIETL 202 ILR G + E + Sbjct: 176 -ILRQGAITREDI 187 >gi|39996696|ref|NP_952647.1| Sua5/YciO/YrdC/YwlC family protein [Geobacter sulfurreducens PCA] gi|39983577|gb|AAR34970.1| Sua5/YciO/YrdC/YwlC family protein [Geobacter sulfurreducens PCA] gi|298505707|gb|ADI84430.1| tRNA (N6-threonylcarbamoyl-A37) modification ATPase [Geobacter sulfurreducens KN400] Length = 203 Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats. Identities = 54/188 (28%), Positives = 94/188 (50%), Gaps = 6/188 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + E L G IA PT+T YG+ + I R+Y +K+R P S++S Sbjct: 12 ARLISHVAEVLGRGGVIAYPTDTTYGIGCSIFSKKGIERIYLLKQREKKKPFSFICSELS 71 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 V ++A V + + K + PGP T V+D +T+ + L KT R+P L Sbjct: 72 EVARYAKVSNYAYKILKRYLPGPYTFVID--ATSVVPDLLVTKQKTVGIRIPDNRICIAL 129 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ GHP+ SAN SG+ I + + ++ K++ L++DGG + S++V++ + Sbjct: 130 VKELGHPIVTTSANLSGEEPIGDPLEV-ERTLGKQLDLVVDGGNLTADV-SSVVSLIGDY 187 Query: 188 KVRILRPG 195 ++LR G Sbjct: 188 P-QVLRRG 194 >gi|327482964|gb|AEA77371.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae LMA3894-4] Length = 185 Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats. Identities = 53/190 (27%), Positives = 86/190 (45%), Gaps = 10/190 (5%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 L++A + L G IA PTE V+GL D N TA+ RL IK+RP +I + + Sbjct: 2 ENLQQAVDALRKGCVIAYPTEGVFGLGCDPDNQTAMLRLLAIKQRPVEKGVILIAASYAQ 61 Query: 70 VKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 ++ + L+ WP PLT V+ ++ D T RV + Sbjct: 62 LRPYVDETQLTADQLTQVLASWPAPLTWVMP--ASGDTPSWVRGQFDTVAVRVSDHPVVQ 119 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 KL +G PL SAN SGQ + + ++ + +I ++++G S S I + + Sbjct: 120 KLCLAFGKPLTSTSANLSGQRACVTQQEVMV-QLGNQIAVVVEGKTSGRHGPSEIRDARS 178 Query: 186 EKKVRILRPG 195 +++LR G Sbjct: 179 ---LQVLRQG 185 >gi|148272340|ref|YP_001221901.1| hypothetical protein CMM_1160 [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830270|emb|CAN01204.1| conserved hypothetical protein [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 309 Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats. Identities = 65/229 (28%), Positives = 105/229 (45%), Gaps = 9/229 (3%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +R A + + G + IPT+TVYG+A D+ NP A++RL + K R P + S Sbjct: 15 TGMRLARQAVGRGEVVVIPTDTVYGIAADAFNPDAVQRLLDAKGRGRDAPPPVLIPGQST 74 Query: 70 VKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128 + A V + L FWPG LT++L + + T R+P + Sbjct: 75 LDALADFVPDVVRRLVDEFWPGGLTVILVAQPS--LVWDLGETRGTVALRMPANSFALEL 132 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ---- 184 PLA+ SANR+GQ + + + + + + +DGG + STIV+ Sbjct: 133 LAETGPLAVSSANRTGQPAAATAQEAV-DQLGGSVDVFLDGGAAGG-AASTIVDASRVTQ 190 Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPR 233 +VRI+R G + +++ I ELE V + P+ P + + APR Sbjct: 191 AGGRVRIVREGAITRAQIQQLIGDELEPVVTAPTEPEEPAVPDAPEAPR 239 >gi|116753773|ref|YP_842891.1| Sua5/YciO/YrdC/YwlC family protein [Methanosaeta thermophila PT] gi|116665224|gb|ABK14251.1| translation factor SUA5 [Methanosaeta thermophila PT] Length = 198 Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats. Identities = 56/207 (27%), Positives = 96/207 (46%), Gaps = 12/207 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M ++ TD +A + +G + PTETVYG+ ++ + ++I R+Y IK+RP P+ Sbjct: 3 MAVVGGTD-----EAARCILSGGIVVYPTETVYGIGANALDESSIVRVYAIKRRPLDKPI 57 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 VS M+ A V P L + + PGP+T ++ S + + TA R P Sbjct: 58 SIAVSSFEMLCDVAHVRPEDLDMMRKLLPGPVTFLVRKRSI--VPDMLTAGSPLVGVRYP 115 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 + P+ SAN +G ++ K + I + ++IDGG + + ST+ Sbjct: 116 DHEMALRLIEMTGPITSTSANITGAPPPSDPKE-IDPEILSRVDMLIDGGRCRYAVPSTL 174 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAIS 207 V++ RILR G + + + I Sbjct: 175 VDLSTR---RILRMGAM-ADRVLEVIG 197 >gi|325694522|gb|EGD36431.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK150] Length = 196 Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats. Identities = 66/198 (33%), Positives = 106/198 (53%), Gaps = 8/198 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + K + L AG + +PTETVYGL + N A+ R+YE+K+RP L +V+ + + Sbjct: 1 MDKIEKTLAAGGAVVLPTETVYGLFAQALNEEAVERVYELKRRPRDKALNLNVASLEEIY 60 Query: 72 KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129 + P L HL + F PGPLT++L + + + ++T FR+P T LI+ Sbjct: 61 AFSKNQPSYLDHLYQAFLPGPLTIILQ--ANDRVPTWINSGMETVGFRIPKHPVTLDLIQ 118 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 YG PL PSAN SG+ S T+ + I+ +E+ + D + G +STI+++ EK Sbjct: 119 KYG-PLIGPSANLSGKASGTSFQQIMMD-FQEEVSGVEDDA-ALTGQDSTILDLSGEK-A 174 Query: 190 RILRPGGLEIETLKRAIS 207 ILR G + E + ++ Sbjct: 175 HILRQGVITREDILARVN 192 >gi|288575494|ref|ZP_05977046.2| Sua5/YciO/YrdC/YwlC family protein [Neisseria mucosa ATCC 25996] gi|288567761|gb|EFC89321.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria mucosa ATCC 25996] Length = 227 Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 74/192 (38%), Gaps = 3/192 (1%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A + + +G + PT++ Y L + A+ R+ I+K + L +D+S Sbjct: 35 ERLIKQATDIVRSGGVVVYPTDSCYALGCKLGDKAAMERILAIRKIDLKHHLTLMCADLS 94 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD K PG T +L L KT RVP L Sbjct: 95 ELGTYAKVDNAQFRQLKAATPGSYTFILQATKEVPNRTL-HPKRKTIGLRVPDNTIALSL 153 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ G PL + + + + + L+IDGG +T++++ Sbjct: 154 LQELGEPLLSCTLMLPEDDEPLTDPYEIRDRLEHAVDLVIDGGWCGT-EPTTVIDMTDGT 212 Query: 188 KVRILRPGGLEI 199 ++ G + + Sbjct: 213 ELIRQGKGDITL 224 >gi|149190428|ref|ZP_01868699.1| Sua5/YciO/YrdC family protein [Vibrio shilonii AK1] gi|148835682|gb|EDL52648.1| Sua5/YciO/YrdC family protein [Vibrio shilonii AK1] Length = 185 Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats. Identities = 46/184 (25%), Positives = 81/184 (44%), Gaps = 10/184 (5%) Query: 16 CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75 L +G IA PTE V+G+ D + +AI +L +K+RP LI ++ ++ + Sbjct: 8 VAALKSGEVIAYPTEGVFGVGCDPDDVSAIEKLLAVKQRPVEKGLILIAANYEQLRPYVD 67 Query: 76 VDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY 131 L+ + WPGP T ++ ++ + + T RV ++L +Y Sbjct: 68 ETKLTATQLESVQNTWPGPYTWIMP--ASDRVSSWLSGAFDTIAVRVTDHELVQQLCLSY 125 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 G P+ SAN SG S + + S + + I+DG S I + + +++ Sbjct: 126 GKPITSTSANLSGMPSCMTTEEV-KSQLGDRLAEILDGETGGRNKPSEIRDART---LKV 181 Query: 192 LRPG 195 LR G Sbjct: 182 LRQG 185 >gi|261343645|ref|ZP_05971290.1| Sua5/YciO/YrdC/YwlC family protein [Providencia rustigianii DSM 4541] gi|282568028|gb|EFB73563.1| Sua5/YciO/YrdC/YwlC family protein [Providencia rustigianii DSM 4541] Length = 206 Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats. Identities = 42/183 (22%), Positives = 76/183 (41%), Gaps = 5/183 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + ++ + L+ G + PT++ Y + + A++R+ I++ A + D+S Sbjct: 14 ARLISQSVDILNKGGVVVYPTDSGYAIGCRLEDKDALQRICRIRQLDANHNFTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD L K PG T +L L KT RVP + L Sbjct: 74 EISNYAHVDNTVFRLIKNNTPGNYTFILKGTKEVP-RRLMNEKKKTIGLRVPSNPIARDL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL-ESTIVNVQCE 186 +E G PL S G + + + K++ L+I GG IG +T+++ + Sbjct: 133 LEAVGEPLMSTSLILPGDDFTQSDPEEIRDLLDKQVDLVIHGGY--IGQKPTTVIDFTDD 190 Query: 187 KKV 189 V Sbjct: 191 VPV 193 >gi|83647680|ref|YP_436115.1| putative translation factor (SUA5) [Hahella chejuensis KCTC 2396] gi|83635723|gb|ABC31690.1| putative translation factor (SUA5) [Hahella chejuensis KCTC 2396] Length = 205 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 49/193 (25%), Positives = 82/193 (42%), Gaps = 6/193 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +R+A E + +G I PT++ Y L + A R+ I++ + D+S Sbjct: 14 ARLVRQAVEIIHSGGVIVYPTDSGYALGCAIGDKNAADRIKSIRRLDDKHNFTLVCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD + L K PG T +L S L + RVP + L Sbjct: 74 DISTYAKVDNSTYRLLKNHTPGAYTFILTATSEVP-RRLLHPKRRQIGIRVPDNRIAQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST-IVNVQCE 186 +E G PL + G+ + + + + LIIDGG G+E T +V++ + Sbjct: 133 LEELGAPLMSSTLIMPGEEMPMTDPYEIRQMLEHAVDLIIDGGFC--GMEPTSVVDLTDD 190 Query: 187 KKVRILRPGGLEI 199 V ILR G ++ Sbjct: 191 APV-ILREGAGDV 202 >gi|68171141|ref|ZP_00544550.1| Sua5/YciO/YrdC/YwlC [Ehrlichia chaffeensis str. Sapulpa] gi|88658214|ref|YP_507600.1| Sua5/YciO/YrdC/YwlC family protein [Ehrlichia chaffeensis str. Arkansas] gi|67999466|gb|EAM86106.1| Sua5/YciO/YrdC/YwlC [Ehrlichia chaffeensis str. Sapulpa] gi|88599671|gb|ABD45140.1| Sua5/YciO/YrdC/YwlC family protein [Ehrlichia chaffeensis str. Arkansas] Length = 194 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 52/196 (26%), Positives = 99/196 (50%), Gaps = 7/196 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + L I PTETVY LA + + A++++Y+IK R PL +S+I +K Sbjct: 2 ISEAVQALKNKHLILFPTETVYALAGSAYSIEAVQKIYQIKGRSYNKPLSLLLSNIDKIK 61 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 + +++ + + + PGP+T VL + + + T R+P +++ Sbjct: 62 QFSTLTEHTFKIIQKLSPGPVTFVLPIHNYNKLPRQFFN--DTIGIRIPDHPIALEILSN 119 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 + +P+ S N SGQ S+T H + +I + I +II+ G+EST++++ + Sbjct: 120 FDNPVVGTSVNISGQPSVT-ASHQVQETIKQHISVIIEDDSLVNGIESTVIDLTS---YK 175 Query: 191 ILRPGGLEIETLKRAI 206 ILR G + + ++ I Sbjct: 176 ILRTGAVSEKKIQDII 191 >gi|157961471|ref|YP_001501505.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella pealeana ATCC 700345] gi|157846471|gb|ABV86970.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella pealeana ATCC 700345] Length = 206 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 41/192 (21%), Positives = 77/192 (40%), Gaps = 4/192 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A + G I PT++ Y L + A+ ++ I++ + D S Sbjct: 14 ARLISQAVNVIKTGGVIVYPTDSGYALGCLIGDKDAMSKIARIRQIDNDHNFSLMCRDQS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD + L K PGP T + L KT RVP L Sbjct: 74 ELATYARVDNQAYRLLKQNTPGPYTFIFMASKEVP-KRLQNPKKKTIGIRVPDNVIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL S G+ + + + ++ LII GG +T++++ + Sbjct: 133 LEALGEPLMSTSLILPGKEFTESDPEHIRDILEHQVDLIIHGGYLGE-KPTTVIDL-SDG 190 Query: 188 KVRILRPGGLEI 199 ++ ++R G ++ Sbjct: 191 EIEVIREGAGDV 202 >gi|293395933|ref|ZP_06640214.1| Sua5/YciO/YrdC/YwlC family protein [Serratia odorifera DSM 4582] gi|291421431|gb|EFE94679.1| Sua5/YciO/YrdC/YwlC family protein [Serratia odorifera DSM 4582] Length = 206 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 43/189 (22%), Positives = 73/189 (38%), Gaps = 4/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A E L G I PT++ Y L A+ R+ I++ + D+S Sbjct: 14 PRLINQAVEVLRKGGVIVYPTDSGYALGCKLEEKAAMERICRIRQLDGNHNFTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD + L K PG T +L L KT RVP L Sbjct: 74 ELSTYAYVDNSAFRLIKNNTPGHYTFILKATKEVP-RRLMNDKRKTIGLRVPSNPIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E P+ + G + +S + K++ L+I GG +T++++ E Sbjct: 133 LEELNEPMMSTTLMLPGNDFAESDPEEISDHLGKQVELVIHGGFLGQ-QPTTVIDLT-ES 190 Query: 188 KVRILRPGG 196 ++R G Sbjct: 191 SPEVVREGA 199 >gi|167044297|gb|ABZ08976.1| putative yrdC domain protein [uncultured marine crenarchaeote HF4000_APKG6B14] Length = 199 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 98/205 (47%), Gaps = 7/205 (3%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+I S +D++ ++ A + ++ G + PT+TVYGL + N A+ LYEIKKR P Sbjct: 1 MKI-SCSDAD-IQIAAKAINDGATVVFPTDTVYGLGCNPYNHEAVLSLYEIKKRKKTKPF 58 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 ++K A +PL +A+ FWPGP+TL+L + L RVP Sbjct: 59 PVIGYAKKELEKIAEFNPLEEKIAEKFWPGPITLILKVKDKEIQKSL--GLDGKIAVRVP 116 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 + L SAN SG + N S ++ L++DGGI ESTI Sbjct: 117 NNQCVLALLKECKLLVATSANISG-TAPFNDPKECSENLSG-YDLLMDGGIISSQGESTI 174 Query: 181 VNVQCEKKVRILRPGGLEIETLKRA 205 V ++ VRILR G + E +K+ Sbjct: 175 VEIENND-VRILRKGNVSEEEIKKI 198 >gi|260913990|ref|ZP_05920464.1| Sua5/YciO/YrdC/YwlC family protein [Pasteurella dagmatis ATCC 43325] gi|260632077|gb|EEX50254.1| Sua5/YciO/YrdC/YwlC family protein [Pasteurella dagmatis ATCC 43325] Length = 207 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 52/194 (26%), Positives = 88/194 (45%), Gaps = 7/194 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A E L G I PT++ Y L + A+ R+ +I++ P + SD+S Sbjct: 14 ARLINQAVEILRRGGVIIYPTDSGYALGCMIGDKHAMDRIVQIRQLPEGHNFTLVCSDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + ++ V+ + L K PG T +L L T+ KT RVP L Sbjct: 74 ELSTYSLVNNTAYRLIKNNTPGRYTFILAATKELP-RRLMTSKRKTIGIRVPDNQIALDL 132 Query: 128 IETYGHPLAIPSANRSGQISIT-NVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQC 185 ++ G P+ S G+ IT + + + +++ LII GG +G E +T+V++ Sbjct: 133 LKALGEPILSCSLMLPGEEYITQSDPEEIRDRLERQVDLIIHGGY--LGQEPTTVVDLTE 190 Query: 186 EKKVRILRPGGLEI 199 + V ILR G I Sbjct: 191 DTPV-ILREGSGSI 203 >gi|159901360|ref|YP_001547607.1| Sua5/YciO/YrdC/YwlC family protein [Herpetosiphon aurantiacus ATCC 23779] gi|159894399|gb|ABX07479.1| Sua5/YciO/YrdC/YwlC family protein [Herpetosiphon aurantiacus ATCC 23779] Length = 207 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 58/185 (31%), Positives = 96/185 (51%), Gaps = 6/185 (3%) Query: 24 PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLSLH 82 + PT+TVYG+ + + AI ++++ K RPA L ++D+ + K A + L+ Sbjct: 25 ILCFPTDTVYGIGGSALDEAAIAQVFQAKARPATVALPMLLADLDDLSKVARDIPDLAWR 84 Query: 83 LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSAN 141 LA+ +WPG LTLVL ++ + L TA T RVP + LI +G P+A SAN Sbjct: 85 LAEAWWPGGLTLVLPAVA--QLPQLLTAGKATIAVRVPNHGQLRNLIRQFGTPIAGTSAN 142 Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIET 201 G+ + + + + + +PL++DGG + STIV++ E+ ILR G + Sbjct: 143 LHGKATPNTAQAV-AEQLAGRVPLVLDGGFAMGEQPSTIVDLSGEQP-TILRQGVISAAQ 200 Query: 202 LKRAI 206 L + Sbjct: 201 LSPWL 205 >gi|90581183|ref|ZP_01236982.1| Putative Sua5/YciO/YrdC family protein [Vibrio angustum S14] gi|90437704|gb|EAS62896.1| Putative Sua5/YciO/YrdC family protein [Vibrio angustum S14] Length = 185 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 42/185 (22%), Positives = 70/185 (37%), Gaps = 7/185 (3%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + + L G I PTE V+G+ D N A+ +L IK+RP LI ++ Sbjct: 2 DNFAQVVAALKQGEVIGYPTEAVFGVGCDPDNQEAVEKLLAIKQRPVEKGLILIAANYEQ 61 Query: 70 VKKHASVDPLSLHLAK---LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + + L+ + WPGP+T V+ ++ T T RV + Sbjct: 62 LLSYIDESLLTEQQKQTVMATWPGPVTWVMPTKP--NVPSFLTGQFTTIAVRVSDHPLVQ 119 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +L +G P+ SAN +GQ + + + + I+ G S I + Sbjct: 120 RLCLEFGKPITSTSANLTGQEPGRTAQEV-EQQLGHCLAAILQGETGGRTNPSEIRDALN 178 Query: 186 EKKVR 190 R Sbjct: 179 GNIFR 183 >gi|153217569|ref|ZP_01951250.1| Sua5/YciO/YrdC family protein [Vibrio cholerae 1587] gi|229515908|ref|ZP_04405365.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae TMA 21] gi|124113481|gb|EAY32301.1| Sua5/YciO/YrdC family protein [Vibrio cholerae 1587] gi|229347008|gb|EEO11970.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae TMA 21] Length = 188 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 53/190 (27%), Positives = 85/190 (44%), Gaps = 10/190 (5%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 L++A L G IA PTE V+GL D N TA+ RL IK+RP +I + + Sbjct: 5 ENLQQAVNALRKGCVIAYPTEGVFGLGCDPDNQTAMLRLLAIKQRPVEKGVILIAASYAQ 64 Query: 70 VKKHASVDPLSLHLA---KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 ++ + L+ WP PLT V+ ++ D T RV + Sbjct: 65 LRPYVDETQLTAEQLTQVLASWPAPLTWVMP--ASGDTPSWVRGQFDTVAVRVSDHPVVQ 122 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 KL +G PL SAN SGQ + + ++ + +I ++++G S S I + + Sbjct: 123 KLCLAFGKPLTSTSANLSGQPACVTRQEVMV-QLGNQIAVVVEGKTSGRHGPSEIRDARS 181 Query: 186 EKKVRILRPG 195 +++LR G Sbjct: 182 ---LQVLRQG 188 >gi|33152183|ref|NP_873536.1| hypothetical protein HD1051 [Haemophilus ducreyi 35000HP] gi|33148405|gb|AAP95925.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP] Length = 205 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 47/189 (24%), Positives = 76/189 (40%), Gaps = 5/189 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E + G I PT++ Y L A+ R+ I+K P + SD++ + Sbjct: 17 INQAVEIIKNGGVIIYPTDSGYALGCAIGEKHAMDRIVAIRKLPENHNFTLVCSDLAELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 +A V S L K P P T +L +T D+ KT RVP LI Sbjct: 77 TYALVTNQSYRLIKNNTPNPYTFILP--ATKDVPRRLMTKRKTIGIRVPNNTIALALISA 134 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G P+ S + + + + LII GG +T+V++ + + Sbjct: 135 LGEPILSCSLMLPDTEITESDPDEIRQHLEHRVDLIIHGGYLGQ-QPTTVVDLTGDTPM- 192 Query: 191 ILRPGGLEI 199 ILR G ++ Sbjct: 193 ILREGSGDL 201 >gi|259908328|ref|YP_002648684.1| hypothetical protein EpC_16760 [Erwinia pyrifoliae Ep1/96] gi|224963950|emb|CAX55455.1| conserved uncharacterized protein [Erwinia pyrifoliae Ep1/96] gi|283478266|emb|CAY74182.1| Uncharacterized protein yciO [Erwinia pyrifoliae DSM 12163] Length = 206 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 45/196 (22%), Positives = 80/196 (40%), Gaps = 4/196 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E L+ G I PT++ Y L + +A+ R+ I++ + D+S Sbjct: 14 PRLIKQAVEMLNKGSVIVYPTDSGYALGCKLEDKSAMERICRIRQLDGNHNFTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD + L K PG T +L L + KT RVP L Sbjct: 74 ELSTYAYVDNTAFRLIKNNTPGNYTFILKATKEVP-RRLMSEKRKTIGLRVPSNPIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E P+ S G + + I K + LII GG +T++++ E Sbjct: 133 LEALNEPMMSTSLMLPGNDFTESDPEAIQDEIGKLVDLIIHGGYLGQ-QPTTVIDLT-EV 190 Query: 188 KVRILRPGGLEIETLK 203 ++R G +++ + Sbjct: 191 APEVVREGVGDVQPFR 206 >gi|224026570|ref|ZP_03644936.1| hypothetical protein BACCOPRO_03327 [Bacteroides coprophilus DSM 18228] gi|224019806|gb|EEF77804.1| hypothetical protein BACCOPRO_03327 [Bacteroides coprophilus DSM 18228] Length = 203 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 49/201 (24%), Positives = 90/201 (44%), Gaps = 9/201 (4%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICH 63 + + +++ + L+ G I PT+T+Y + + I R+ ++KK P + L Sbjct: 8 KNNNPDDIQRVVDILNDGGIIIYPTDTMYAIGCHALKERPIERICKLKKIDPRKHNLSII 67 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-G 122 D+S + ++A V+ + L K PGP T +L+ S P N K RVP Sbjct: 68 CYDLSNISEYARVNNATFKLMKRCLPGPFTFILNADSRL---PKIFRNRKEVGIRVPDNN 124 Query: 123 FTKKLIETYGHPLAIPSANRSGQISIT--NVKHILSSSICKEIPLIIDGGISKIGLESTI 180 +++ + P+ + R I ++ +E+ L+IDGGI I ST+ Sbjct: 125 IIREICRSLDAPILTTTLPREEHEDIEYVTDPELIDEKFGEEVDLVIDGGIGGI-ESSTV 183 Query: 181 VNVQCEKKVRILRPGGLEIET 201 ++ C+ + I+R G +E Sbjct: 184 IDC-CDDEPEIIRQGKGILEE 203 >gi|297581913|ref|ZP_06943833.1| Sua5/YciO/YrdC family protein [Vibrio cholerae RC385] gi|297533780|gb|EFH72621.1| Sua5/YciO/YrdC family protein [Vibrio cholerae RC385] Length = 188 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 53/190 (27%), Positives = 86/190 (45%), Gaps = 10/190 (5%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 L++A + L G IA PTE V+GL D N TA+ RL IK+RP +I + + Sbjct: 5 ENLQQAVDALRKGCVIAYPTEGVFGLGCDPDNQTAMLRLLAIKQRPVEKGVILIAASYAQ 64 Query: 70 VKKHASVDPLSLHLA---KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 ++ + L+ WP PLT V+ ++ D T RV + Sbjct: 65 LRPYVDETQLTADQLTQVLASWPAPLTWVMP--ASGDTPSWIRGQFDTVAVRVSDHPVVQ 122 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 KL +G PL SAN SGQ + + ++ + +I ++++G S S I + + Sbjct: 123 KLCLAFGKPLTSTSANLSGQPACVTRQEVMV-QLGNQIAVVVEGKTSGRHGPSEIRDARS 181 Query: 186 EKKVRILRPG 195 +++LR G Sbjct: 182 ---LQVLRQG 188 >gi|49079254|gb|AAT49871.1| PA3199 [synthetic construct] Length = 210 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 48/189 (25%), Positives = 78/189 (41%), Gaps = 4/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E + G I PT++ Y L TA+ R+ I++ + D+S Sbjct: 14 PRLVKQAVEIVRQGGVIVYPTDSSYALGCRIGEKTAVDRIRRIRQLDDKHNFTLVCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD L K PGP T +L L +T RVP C + L Sbjct: 74 ELGVYAKVDTGLFRLLKAHTPGPYTFILSATREVP-RMLLHPKRRTIGLRVPNCPIARAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL S G N + + + ++ LI+DGG G ST++++ Sbjct: 133 LEELGEPLMSVSLIMPGSGEPLNDPYEMRQVLEHQVDLIVDGGYGG-GEASTVISLTDTD 191 Query: 188 KVRILRPGG 196 ++R G Sbjct: 192 P-EVIRVGC 199 >gi|15602527|ref|NP_245599.1| hypothetical protein PM0662 [Pasteurella multocida subsp. multocida str. Pm70] gi|12720939|gb|AAK02746.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 207 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 49/189 (25%), Positives = 86/189 (45%), Gaps = 5/189 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E L AG I PT++ Y L + A+ R+ +I++ P + SD+S + Sbjct: 17 INQAVEILRAGGVIVYPTDSGYALGCMIGDKHAMDRIVQIRQLPEGHNFTLVCSDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 ++ V+ ++ L K PG T +L L T+ KT RVP L+ T Sbjct: 77 TYSLVNNMAYRLIKNNTPGRYTFILTATKELP-RRLMTSKRKTIGIRVPDNQIALALLST 135 Query: 131 YGHPLAIPSANRSGQISIT-NVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G P+ S G+ ++T + + + K++ LII GG +T+V++ + + Sbjct: 136 LGEPILSCSLMLPGEENVTQSDPEEIRDRLEKQVDLIIHGGY-LGAEPTTVVDLTNDTPI 194 Query: 190 RILRPGGLE 198 I+R G Sbjct: 195 -IIREGSGS 202 >gi|293375560|ref|ZP_06621834.1| Sua5/YciO/YrdC/YwlC family protein [Turicibacter sanguinis PC909] gi|292645777|gb|EFF63813.1| Sua5/YciO/YrdC/YwlC family protein [Turicibacter sanguinis PC909] Length = 223 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 56/218 (25%), Positives = 102/218 (46%), Gaps = 6/218 (2%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I L + L I PT+TVYG+ + +P A+ +++E+K RP LI + Sbjct: 2 IFKKEQLSEIIGQLHEDDVIVFPTDTVYGIGANIHSPIALNKIFEVKNRPTDKSLIILCA 61 Query: 66 DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 ++ +++ +D L F PG LTL+L+ ++ T T R+P Sbjct: 62 NVMQMEEIVGPLDQQVKVLVDNFLPGGLTLILNT--KLELADEITRGKSTIGLRIPNHPV 119 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + PLA SAN SG+ S T ++ S+ + + +ID G + + STI++ Sbjct: 120 ALELLEKVGPLATTSANISGEPSPTMIE--TSNPVISRVKFVIDDGETMEKVPSTILDCT 177 Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQS 222 + ++ ILR G + E +K+ + ++ + + S+ S Sbjct: 178 -QSEIVILRQGAISEEEIKKVLKNKVRCIILKKSSILS 214 >gi|262191286|ref|ZP_06049480.1| YrdC family protein [Vibrio cholerae CT 5369-93] gi|262032824|gb|EEY51368.1| YrdC family protein [Vibrio cholerae CT 5369-93] Length = 188 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 53/190 (27%), Positives = 86/190 (45%), Gaps = 10/190 (5%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 L++A + L G IA PTE V+GL D N TA+ RL IK+RP +I + + Sbjct: 5 ENLQQAVDALRKGCVIAYPTEGVFGLGCDPDNQTAMLRLLAIKQRPVEKGVILIAASYAQ 64 Query: 70 VKKHASVDPLSLHLA---KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 ++ + L+ WP PLT V+ ++ D T RV + Sbjct: 65 LRPYVDETQLTADQLTQVLASWPAPLTWVMP--ASGDTPSWVRGQFDTVAVRVSDHPVVQ 122 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 KL +G PL SAN SGQ + + ++ + +I ++++G S S I + + Sbjct: 123 KLCLAFGKPLTSTSANLSGQRACVTQQEVMV-QLGNQIAVVVEGKTSGRHGPSEIRDARS 181 Query: 186 EKKVRILRPG 195 +++LR G Sbjct: 182 ---LQVLRQG 188 >gi|15598395|ref|NP_251889.1| hypothetical protein PA3199 [Pseudomonas aeruginosa PAO1] gi|116051189|ref|YP_789980.1| SUA5/yciO/yrdC family:Sua5/YciO/YrdC/YwlC family protein [Pseudomonas aeruginosa UCBPP-PA14] gi|254236161|ref|ZP_04929484.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|254241887|ref|ZP_04935209.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|296388314|ref|ZP_06877789.1| SUA5/yciO/yrdC family:Sua5/YciO/YrdC/YwlC family protein [Pseudomonas aeruginosa PAb1] gi|313108516|ref|ZP_07794517.1| putative Sua5/YciO/YrdC/YwlC protein family [Pseudomonas aeruginosa 39016] gi|9949319|gb|AAG06587.1|AE004744_2 conserved hypothetical protein [Pseudomonas aeruginosa PAO1] gi|115586410|gb|ABJ12425.1| putative SUA5/yciO/yrdC family:Sua5/YciO/YrdC/YwlC protein family [Pseudomonas aeruginosa UCBPP-PA14] gi|126168092|gb|EAZ53603.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|126195265|gb|EAZ59328.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|310881019|gb|EFQ39613.1| putative Sua5/YciO/YrdC/YwlC protein family [Pseudomonas aeruginosa 39016] Length = 209 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 48/189 (25%), Positives = 78/189 (41%), Gaps = 4/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E + G I PT++ Y L TA+ R+ I++ + D+S Sbjct: 14 PRLVKQAVEIVRQGGVIVYPTDSSYALGCRIGEKTAVDRIRRIRQLDDKHNFTLVCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD L K PGP T +L L +T RVP C + L Sbjct: 74 ELGVYAKVDTGLFRLLKAHTPGPYTFILSATREVP-RMLLHPKRRTIGLRVPNCPIARAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL S G N + + + ++ LI+DGG G ST++++ Sbjct: 133 LEELGEPLMSVSLIMPGSGEPLNDPYEMRQVLEHQVDLIVDGGYGG-GEASTVISLTDTD 191 Query: 188 KVRILRPGG 196 ++R G Sbjct: 192 P-EVIRVGC 199 >gi|328951772|ref|YP_004369106.1| Sua5/YciO/YrdC/YwlC family protein [Desulfobacca acetoxidans DSM 11109] gi|328452096|gb|AEB07925.1| Sua5/YciO/YrdC/YwlC family protein [Desulfobacca acetoxidans DSM 11109] Length = 202 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 53/195 (27%), Positives = 93/195 (47%), Gaps = 6/195 (3%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 LR+ + L AG IA PT+T YG+ D N AI ++Y+ KKRP P +D+ Sbjct: 11 PERLLRRVVQVLTAGGIIAYPTDTCYGIGCDLFNKKAIEKIYQFKKRPLTKPFSFICADL 70 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + ++A V + + PGP T +L+ + + + KTA RVP Sbjct: 71 KHISEYAKVSNFAYKTMRRLLPGPYTFILE--GSRLVPKIMLTRRKTAGLRVPDNAICLG 128 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L++ GHP+ SA+R S+ + + ++ + L+IDGG+ S+++++ + Sbjct: 129 LVKLLGHPIISTSASREDG-SVMSDPYDIAEYYKPPLDLVIDGGVIAPA-PSSVISLIGD 186 Query: 187 KKVRILRPGGLEIET 201 ++R G E+ Sbjct: 187 VP-EVIREGKGEVSD 200 >gi|330447323|ref|ZP_08310973.1| protein involved in synthesis of threonylcarbamoyladenosine-modified tRNA [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491514|dbj|GAA05470.1| protein involved in synthesis of threonylcarbamoyladenosine-modified tRNA [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 185 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 43/185 (23%), Positives = 71/185 (38%), Gaps = 7/185 (3%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + L G I PTE V+G+ D N A+ +L EIK+RP LI ++ Sbjct: 2 ENFAQVVAALKQGEVIGYPTEAVFGVGCDPDNQQAVEKLLEIKQRPVEKGLILIAANYDQ 61 Query: 70 VKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + + L+ WPGP+T V+ + ++ T T RV + Sbjct: 62 LLPYIDESQLTAEQKAAVMATWPGPVTWVMPTKA--NVPAFLTGQFTTIAVRVSDHPLVQ 119 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +L +G P+ SAN +GQ + + + + I+ G S I + + Sbjct: 120 RLCLEFGKPITSTSANLTGQEPGRTAQEV-EQQLGHCLAAILQGETGGRTNPSEIRDARN 178 Query: 186 EKKVR 190 R Sbjct: 179 GNIFR 183 >gi|255067572|ref|ZP_05319427.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria sicca ATCC 29256] gi|255048193|gb|EET43657.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria sicca ATCC 29256] Length = 206 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 40/188 (21%), Positives = 74/188 (39%), Gaps = 5/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A + + +G I PT++ Y L + A+ R+ I+K + L +D+S Sbjct: 14 ERLIKQAADIVRSGGVIVYPTDSCYALGCKLGDKAAMERILAIRKIDLKHHLTLMCADLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD K PG T +L L KT RVP L Sbjct: 74 ELGTYAKVDNAQFRQLKAATPGSYTFILQATKEVPNRTL-HPKRKTIGLRVPDNTIALSL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ G PL + + + + + L+IDGG +T++++ Sbjct: 133 LQELGEPLLSCTLMLPEDDEPLTDPYEIRDRLEHSVDLVIDGGWCGT-EPTTVIDMTDGT 191 Query: 188 KVRILRPG 195 ++ +R G Sbjct: 192 EL--IRQG 197 >gi|115352187|ref|YP_774026.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia ambifaria AMMD] gi|115282175|gb|ABI87692.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia ambifaria AMMD] Length = 210 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 49/193 (25%), Positives = 84/193 (43%), Gaps = 4/193 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A + + G IA+PT++ Y LA + A+ R+ I+ L V D+S Sbjct: 14 PRLIKQAADIVSKGGVIAMPTDSSYALACHLDDKGAVERVRRIRGLDDKQHLSLLVRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + A VD K PGP +L LS + KT RVP T L Sbjct: 74 ELANFAMVDNRQYRQIKSVTPGPYVFILQATKEVP-RRLSHPSRKTIGLRVPDHAITLAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E+ G PL + N + + + K++ L+IDGG ST++++ ++ Sbjct: 133 LESLGQPLLGTTLILPPDDEPLNDPEDIRARLEKQVDLVIDGGACPR-EPSTVIDLTGDE 191 Query: 188 KVRILRPGGLEIE 200 +++R G +E Sbjct: 192 P-QLVRAGRGALE 203 >gi|58617022|ref|YP_196221.1| hypothetical protein ERGA_CDS_02950 [Ehrlichia ruminantium str. Gardel] gi|58416634|emb|CAI27747.1| Conserved hypothetical protein (putative translation factor SUA5 family) [Ehrlichia ruminantium str. Gardel] Length = 199 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 55/197 (27%), Positives = 97/197 (49%), Gaps = 7/197 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + KA E L I PTETVY LA D+ + I+++Y+IK RP P+ +S+I +K Sbjct: 2 ISKAVEALKNKQLICFPTETVYALAGDAYSIEVIQKIYKIKNRPYNKPVSLLLSNIDQIK 61 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 + +++ + ++ + PGP+T +L + + + N R+P ++ Sbjct: 62 QFSNLTEHTAYIIQELSPGPITFILPIHNYGKLPKQFFYNK--IGIRIPNHPIALAILNN 119 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 + HP+ S N SGQ T+V +S +I K I IID G ST++++ + Sbjct: 120 FDHPITATSVNISGQQDATSVDQ-ISDNIKKNISFIIDNNRLVHGTASTVIDLTS---YK 175 Query: 191 ILRPGGLEIETLKRAIS 207 ILR G + + ++ + Sbjct: 176 ILRKGAVTKQKIQEILK 192 >gi|312796685|ref|YP_004029607.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia rhizoxinica HKI 454] gi|312168460|emb|CBW75463.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia rhizoxinica HKI 454] Length = 209 Score = 170 bits (432), Expect = 2e-40, Method: Composition-based stats. Identities = 51/193 (26%), Positives = 85/193 (44%), Gaps = 4/193 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A + +D G +A+PT++ Y LA + A+ +L I+ L V D+S Sbjct: 14 PRLIKQAAQIIDGGGVVALPTDSSYALACHLDDKAAVEQLRRIRGLNERRHLSLMVRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + A VD L K PGP +L LS + KT RVP T L Sbjct: 74 ELATFAMVDNRQYRLIKAVTPGPYVFILQATKEVP-RRLSHPSRKTIGLRVPDHAITLAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G P+ + G N + + + K++ L+IDGG ST++++ + Sbjct: 133 LEALGQPVIASTLILPGDDEPLNEPEAIRAQLEKQLDLVIDGGACAA-EPSTVIDLSGDA 191 Query: 188 KVRILRPGGLEIE 200 V ++R G +E Sbjct: 192 PV-LVRVGRGPLE 203 >gi|225872631|ref|YP_002754088.1| Sua5/YciO/YrdC/YwlC family protein [Acidobacterium capsulatum ATCC 51196] gi|225793984|gb|ACO34074.1| Sua5/YciO/YrdC/YwlC family protein [Acidobacterium capsulatum ATCC 51196] Length = 210 Score = 170 bits (432), Expect = 2e-40, Method: Composition-based stats. Identities = 60/202 (29%), Positives = 100/202 (49%), Gaps = 6/202 (2%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 + + ++ + +G + +PT+T YGLAVD N A+ +YE+K R PL +++ Sbjct: 10 EPDRIQYVVSCIRSGKVVGMPTDTFYGLAVDPVNLRAVESIYELKSRQKHKPLSLLIANP 69 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + A VD LA+ FWPGPLT+++ + + + STAN RVP + Sbjct: 70 GQAYELAREVDNHFDRLAERFWPGPLTVIV--KAGSRLPLRSTANTGNVALRVPDAEIPR 127 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ- 184 ++E G P+ SAN T + + + IPLI+DGG + L +TIV++ Sbjct: 128 AVVEALGLPITATSANLQNAAECTYASCV-RDQLGERIPLIVDGGPTPRSLPTTIVDLSA 186 Query: 185 CEKKVRILRPGGLEIETLKRAI 206 + +ILR G + + A+ Sbjct: 187 GGGQWQILREGAIPTYAIALAL 208 >gi|229819785|ref|YP_002881311.1| Sua5/YciO/YrdC/YwlC family protein [Beutenbergia cavernae DSM 12333] gi|229565698|gb|ACQ79549.1| Sua5/YciO/YrdC/YwlC family protein [Beutenbergia cavernae DSM 12333] Length = 338 Score = 170 bits (432), Expect = 2e-40, Method: Composition-based stats. Identities = 61/224 (27%), Positives = 99/224 (44%), Gaps = 9/224 (4%) Query: 1 MQIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56 M ++ TD + +L A E + G I +PT+TVYG+A D+ + A+ L K R Sbjct: 1 MTLLDCTDPDNREKSLDAAVEAVTHGGLIVLPTDTVYGIAADAFDKDAVAALLAAKGRGR 60 Query: 57 MNPLICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115 P V D S + A+ P + L + FWPG LT+++ + T T Sbjct: 61 QKPPPVLVGDHSTLDGLATDVPEVVRTLIERFWPGALTIIVRAQPSLTWDLGYT--RGTV 118 Query: 116 CFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R+P + PLA SANR+G+ + T + + + +DGG ++ G Sbjct: 119 ALRMPDDEIALDVLRRTGPLATSSANRTGRPAATTAA-EAQEQLGARVGVYLDGGPARGG 177 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETST 219 STI++ + I+R G L +E L L ++ +T Sbjct: 178 EASTIIDATG-PTLSIVREGALSVEVLGEVAPELLPPPPEDETT 220 >gi|320106655|ref|YP_004182245.1| Sua5/YciO/YrdC/YwlC family protein [Terriglobus saanensis SP1PR4] gi|319925176|gb|ADV82251.1| Sua5/YciO/YrdC/YwlC family protein [Terriglobus saanensis SP1PR4] Length = 214 Score = 170 bits (432), Expect = 2e-40, Method: Composition-based stats. Identities = 59/202 (29%), Positives = 100/202 (49%), Gaps = 6/202 (2%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 + ++ L++G+ AIPT+T YGLAVD N A+ ++YE+K R PL ++D Sbjct: 14 EPELVQHVVRCLESGMVAAIPTDTFYGLAVDPVNLRAVEQIYELKGRAKHKPLSLLIADT 73 Query: 68 SMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125 + + A + LA+ FWPGPLT+++ + + + TA+ RVP + Sbjct: 74 AHAYELARDVDTAFDKLAEKFWPGPLTIIV--KAGSRLPLRVTAHTGNVALRVPEAAIPR 131 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +++ G P+ SAN G N + + +IPLI+DGG + + +TIV++ Sbjct: 132 AIVKKLGLPITATSANLRGLPEC-NYAACVRDQLGGQIPLIVDGGPTARSIATTIVDLSG 190 Query: 186 EK-KVRILRPGGLEIETLKRAI 206 ILR G + + A+ Sbjct: 191 GGNSWMILREGAIPTHEIALAL 212 >gi|330996846|ref|ZP_08320715.1| Sua5/YciO/YrdC/YwlC family protein [Paraprevotella xylaniphila YIT 11841] gi|329572289|gb|EGG53948.1| Sua5/YciO/YrdC/YwlC family protein [Paraprevotella xylaniphila YIT 11841] Length = 202 Score = 170 bits (432), Expect = 2e-40, Method: Composition-based stats. Identities = 54/195 (27%), Positives = 85/195 (43%), Gaps = 8/195 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSD 66 + + KA + L G I PT+TVY + D+ N A+ R+ +K P + L D Sbjct: 11 NPREMVKALKMLRDGELIIYPTDTVYAIGCDALNVRAVERICALKGVNPQKSNLSIICYD 70 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 +S + ++A V + L K PGP T +L S P N K RVP + Sbjct: 71 LSNISEYAQVSNAAFKLLKKNLPGPFTFILPTSSRL---PKIYKNKKEVGIRVPDNSIAR 127 Query: 126 KLIETYGHPLAIPSANRSGQIS-ITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 L+E G+PL S + +I + ++ + L+IDGG ST+V+ Sbjct: 128 GLVEGLGNPLLTMSVHDEDEIIEYSTDPELIHEKYEGRVALVIDGGYGGS-EASTVVDC- 185 Query: 185 CEKKVRILRPGGLEI 199 + I+R G E+ Sbjct: 186 VDDAFEIVRQGKGEL 200 >gi|291298831|ref|YP_003510109.1| Sua5/YciO/YrdC/YwlC family protein [Stackebrandtia nassauensis DSM 44728] gi|290568051|gb|ADD41016.1| Sua5/YciO/YrdC/YwlC family protein [Stackebrandtia nassauensis DSM 44728] Length = 217 Score = 170 bits (432), Expect = 2e-40, Method: Composition-based stats. Identities = 51/198 (25%), Positives = 85/198 (42%), Gaps = 5/198 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +A++ A +++G + +PT+TVYGL D+ A+ L KKR V Sbjct: 13 DSAIKAAVSAVESGDLVVMPTDTVYGLGADAFKSYAVDALLRTKKRGRDMVPPVLVGSRK 72 Query: 69 MVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 + SV + L FWPGPLT+V+ T + + T R+P Sbjct: 73 ALDGLTISVPSMIKDLVAAFWPGPLTVVMHYSPT--LAWDLGDDDGTVAVRMPLHPVALE 130 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + P+A+ SAN++GQ + + + ++ G S STIV+ + Sbjct: 131 VLAETGPMAVSSANKTGQPPAATATDA-KEQLGYAVQVYLEAGPSPDTKPSTIVDCTGDV 189 Query: 188 KVRILRPGGLEIETLKRA 205 ++LR G L +E L+ Sbjct: 190 P-KVLRQGALSLERLREV 206 >gi|126666027|ref|ZP_01737007.1| putative translation factor (SUA5) [Marinobacter sp. ELB17] gi|126629349|gb|EAZ99966.1| putative translation factor (SUA5) [Marinobacter sp. ELB17] Length = 206 Score = 170 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 46/189 (24%), Positives = 76/189 (40%), Gaps = 3/189 (1%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A + L G IA PT++ Y L + +A R+ I+K + D+S Sbjct: 14 KRLINQAVDILRKGGVIAYPTDSGYALGCHLGDKSASDRIKRIRKLDDKHNFTLVCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD + + K + PG T +LD S L +T RVP L Sbjct: 74 DIGTYAKVDNTTYRMLKTYTPGAYTFILDATSEVP-RRLLHPKRRTIGVRVPDNAVVHAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + +G P+ + G+ + ++ E+ LIIDGG + +T+VN Sbjct: 133 LGEFGEPIMSSTLILPGETEPMTDPEDIRDALEHELDLIIDGGFCGM-EATTVVNFTSGS 191 Query: 188 KVRILRPGG 196 V G Sbjct: 192 PVVTRVGKG 200 >gi|270262116|ref|ZP_06190388.1| hypothetical protein SOD_b03230 [Serratia odorifera 4Rx13] gi|270043992|gb|EFA17084.1| hypothetical protein SOD_b03230 [Serratia odorifera 4Rx13] Length = 206 Score = 170 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 43/192 (22%), Positives = 76/192 (39%), Gaps = 4/192 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A + L G I PT++ Y L +A+ R+ I++ + D+S Sbjct: 14 PRLINQAVDVLRKGGVIVYPTDSGYALGCKLEEKSAMERICRIRQLDGNHNFTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD + L K PG T +L L KT RVP L Sbjct: 74 ELSTYAYVDNTAFRLIKNNTPGNYTFILKATKEVP-RRLMNDKRKTIGLRVPSNPIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E P+ + G + +S + K++ L+I GG +T++++ E Sbjct: 133 LEVLNEPMMSTTLMLPGNDFAESDPEEISDHLGKQVDLVIHGGFLGQ-QPTTVIDLT-ES 190 Query: 188 KVRILRPGGLEI 199 ++R G +I Sbjct: 191 APEVVREGAGDI 202 >gi|89094112|ref|ZP_01167055.1| hypothetical protein MED92_16255 [Oceanospirillum sp. MED92] gi|89081587|gb|EAR60816.1| hypothetical protein MED92_16255 [Oceanospirillum sp. MED92] Length = 205 Score = 170 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 47/205 (22%), Positives = 81/205 (39%), Gaps = 8/205 (3%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 Q I N + +A E ++ G + PT+ Y L + +A+ ++ I++ Sbjct: 3 QFFQIHPENPQQRLINQAVEIINRGGVVIYPTDCAYALGCHLGDKSALEKIKRIRQLDDK 62 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 + D+S + +A VD L K PG T +L S L +T Sbjct: 63 HNFTLVCRDLSEISTYAKVDNSCYRLLKSHTPGAYTFILKATSEVP-RRLLHPKRRTIGI 121 Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P L E G P+ S G+ + + + ++ L+IDGG G+ Sbjct: 122 RIPDNPIALALTEALGEPIMSTSLIMPGEEMPLMDPYEMRELLQHQVDLVIDGGYC--GM 179 Query: 177 ESTIVNVQCEKKVRILRPGGLEIET 201 E+T V E+ I+R G ++ Sbjct: 180 EATSVINLVEETPEIIREGAGDVSD 204 >gi|258621658|ref|ZP_05716689.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|258626397|ref|ZP_05721244.1| conserved hypothetical protein [Vibrio mimicus VM603] gi|262171790|ref|ZP_06039468.1| YrdC family protein [Vibrio mimicus MB-451] gi|258581449|gb|EEW06351.1| conserved hypothetical protein [Vibrio mimicus VM603] gi|258585889|gb|EEW10607.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|261892866|gb|EEY38852.1| YrdC family protein [Vibrio mimicus MB-451] Length = 206 Score = 170 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 74/189 (39%), Gaps = 4/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A + G + PT++ Y + N + R+ +I++ + D+S Sbjct: 14 TRLINQAVAIIRNGGVVVYPTDSGYAVGCQLENKHGMERICQIRRLDDKHNFTLLCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD + L K PGP T + L KT RVP L Sbjct: 74 ELSLYARVDNTAFRLLKNNTPGPYTFIFKGTKEVP-RRLMNEKRKTIGIRVPDNKIALDL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL S G + + S+ + +I++GG +T+++ + Sbjct: 133 LEALGEPLMSTSLILPGNDFTESDPEAIRDSLEHAVDVILNGGYLGQ-QPTTVIDF-SDD 190 Query: 188 KVRILRPGG 196 ++ + R G Sbjct: 191 EIVVARVGA 199 >gi|306825265|ref|ZP_07458607.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432701|gb|EFM35675.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 200 Score = 170 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 61/197 (30%), Positives = 101/197 (51%), Gaps = 8/197 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + L+ G + +PTETVYGL + + A+ +Y++K+RP L +V+ + + Sbjct: 2 MDRIRQELEKGRAVVLPTETVYGLFAKALDEKAVDHVYKLKRRPREKALNLNVASLEDIL 61 Query: 72 KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P L L + F PGPLT++L+ + + + L T FR+P T LI Sbjct: 62 HFSKNQPTYLQKLVEAFLPGPLTIILE--ANDRVPYWVNSGLSTVGFRMPSHPITLDLIR 119 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL PSAN SGQ S IL + + L D ++ G +STI+++ +K V Sbjct: 120 ETG-PLIGPSANISGQASGVTFAQILEDFDQEVLGLEDDAFLT--GQDSTILDLSGDK-V 175 Query: 190 RILRPGGLEIETLKRAI 206 +ILR G ++ E + + Sbjct: 176 KILRQGAIKREDILARL 192 >gi|183603392|ref|ZP_02711993.2| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae CDC1087-00] gi|183569699|gb|EDT90227.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae CDC1087-00] Length = 200 Score = 170 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 60/197 (30%), Positives = 101/197 (51%), Gaps = 8/197 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + L+ G + +PTETVYGL + + A+ +Y++K+RP L +++ + Sbjct: 2 MDRIRQELENGGAVVLPTETVYGLFAKALDEKAVDHVYQLKRRPRDKALNLNIASFEDIL 61 Query: 72 KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P L L + F PG LT++L+ + + ++L T FR+P T LI Sbjct: 62 HFSKNQPTYLQKLVETFLPGSLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIR 119 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL PSAN SGQ S + IL + + L D ++ G +STIV++ +K V Sbjct: 120 ETG-PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGDK-V 175 Query: 190 RILRPGGLEIETLKRAI 206 +ILR G ++ E + + Sbjct: 176 KILRQGAIKREDILARL 192 >gi|117619033|ref|YP_857424.1| Sua5/YciO/YrdC/YwlC family protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560440|gb|ABK37388.1| Sua5/YciO/YrdC/YwlC family protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 229 Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats. Identities = 41/189 (21%), Positives = 74/189 (39%), Gaps = 3/189 (1%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A + + G I PT++ Y L + A+ R+ I++ + D+S Sbjct: 37 ARLISQAVQIIQNGGVIVYPTDSGYALGCQMGDKGALERICRIRRIDPNHDFTLVCRDLS 96 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD + L K PGP T + L KT RVP + L Sbjct: 97 EISTYAKVDNTAFRLIKNNTPGPYTFIFKATKEVP-RRLMNEKKKTIGIRVPDNKIAQAL 155 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL + + + K++ L+++GG +T+V+ ++ Sbjct: 156 LEALGEPLLSTTLILPESDMAEFDPEEIFDKLGKQLDLVVNGGYLGE-QPTTVVDFSDDE 214 Query: 188 KVRILRPGG 196 V R G Sbjct: 215 PVLRRRGAG 223 >gi|294787792|ref|ZP_06753036.1| Sua5/YciO/YrdC/YwlC family protein [Simonsiella muelleri ATCC 29453] gi|294484085|gb|EFG31768.1| Sua5/YciO/YrdC/YwlC family protein [Simonsiella muelleri ATCC 29453] Length = 206 Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats. Identities = 42/199 (21%), Positives = 78/199 (39%), Gaps = 9/199 (4%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 Q ++I N +++A E ++ G + PT++ Y L + A+ R+ I++ Sbjct: 3 QFLTIHPDNPQDRLIKQAVETINKGGVVIYPTDSCYALGCRLGDKAAMERILAIRQMNLK 62 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 + +D+S + +A VD K PG T +L L KT Sbjct: 63 HHFTLMCADLSELGTYAKVDNSQFRQLKAATPGSYTFILQATKEVPNRTL-HPKRKTIGL 121 Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 RVP L++ G P+ + + + + + LIIDGG Sbjct: 122 RVPDNQIALALLKELGEPMLSCTLILPEDNEPLTDPYEIRDRLDYAVDLIIDGGWCGT-E 180 Query: 177 ESTIVNVQCEKKVRILRPG 195 +T++++ V ++R G Sbjct: 181 PTTVIDMTDG--VELVRQG 197 >gi|212288267|sp|Q6LLJ9|RIMN_PHOPR RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN Length = 185 Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats. Identities = 48/185 (25%), Positives = 83/185 (44%), Gaps = 7/185 (3%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + L++ L +G IA PTE V+G+ D NP A+ +L +K+RP LI ++ Sbjct: 2 DNLQQVVSALQSGEVIAYPTEGVFGVGCDPDNPQAVEKLLALKQRPIEKGLILIAANYQQ 61 Query: 70 VKKH---ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 ++ + A + L WPGP+T V+ + DI PL T + RV + Sbjct: 62 LQPYIDDAQLSDLQKQKIFSTWPGPVTWVMPVKK--DISPLLTGKFTSIAVRVSDHPLVQ 119 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 KL +G P+ SAN +G V + + + + + I++G + I + Sbjct: 120 KLCHQFGKPITSTSANLTGLPPCKTVTEV-QNQLGEHLSAILEGETGGRENPTEIRDAFS 178 Query: 186 EKKVR 190 + +R Sbjct: 179 DTVLR 183 >gi|332290736|ref|YP_004429345.1| Sua5/YciO/YrdC/YwlC family protein [Krokinobacter diaphorus 4H-3-7-5] gi|332168822|gb|AEE18077.1| Sua5/YciO/YrdC/YwlC family protein [Krokinobacter diaphorus 4H-3-7-5] Length = 205 Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats. Identities = 44/197 (22%), Positives = 82/197 (41%), Gaps = 9/197 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP-LICHVSD 66 + L++ + L G I P++TVY L D N A+ R+ +IK D Sbjct: 13 NPRDLQEIVKILKNGGLIIYPSDTVYALGCDITNTKALERVAQIKGVKLAKANFSFVCED 72 Query: 67 ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 +S + + +D + + K PGP T +L + P K RVP T Sbjct: 73 LSNLSDYVKQIDTQTFKILKRALPGPYTFILPGNNNL---PSVFKKKKEVGIRVPDNEIT 129 Query: 125 KKLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + ++ G+P+ S + I T ++ + +I+DGG + ST++++ Sbjct: 130 RAIVRALGNPIISTSIYDEDEVIEYTTDPELIFEKWQNRVDVIVDGGYGG-NIPSTVIDL 188 Query: 184 QCEKKVRILRPGGLEIE 200 ++ + ++R G E Sbjct: 189 TGDEPI-LIREGKGSPE 204 >gi|251782313|ref|YP_002996615.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390942|dbj|BAH81401.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 208 Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats. Identities = 56/195 (28%), Positives = 94/195 (48%), Gaps = 6/195 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S+ + + +++G + +PTETVYGL + + A+ +Y++K+RP + +V+D Sbjct: 10 SSIMERLASIIESGGALVLPTETVYGLFAKALDEKAVNAVYDLKQRPRDKAMNLNVADFD 69 Query: 69 MVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 + + P L L + F PGPLT++L + + + L T FR+P Sbjct: 70 SILAFSKEQPTYLEKLYQAFLPGPLTVILK--ANDHVPHWINSGLATVGFRLPSHPITAA 127 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + PL PSAN SG+ S I+ + I D ++ G +STI+++ E Sbjct: 128 LIQKTGPLIGPSANLSGKPSGKVFDQIIQDFDFQVIGYADDPFLT--GKDSTILDLSGES 185 Query: 188 KVRILRPGGLEIETL 202 V ILR G + E L Sbjct: 186 PV-ILRQGAITKEEL 199 >gi|86132278|ref|ZP_01050873.1| YrdC protein [Dokdonia donghaensis MED134] gi|85817197|gb|EAQ38380.1| YrdC protein [Dokdonia donghaensis MED134] Length = 205 Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats. Identities = 45/197 (22%), Positives = 84/197 (42%), Gaps = 9/197 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP-LICHVSD 66 + L++ + L AG I P++TVY L D N A+ ++ +IK D Sbjct: 13 NPKDLKQIVKILKAGGLIIYPSDTVYALGCDITNAKALEKVAQIKGVKLAKANFSFVCED 72 Query: 67 ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 +S + + +D + + K PGP T +L + P S K RVP T Sbjct: 73 LSNLSDYVRQIDTKTFKILKRALPGPYTFILPGNNNL---PSSFKKKKEVGIRVPDNEIT 129 Query: 125 KKLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + ++ G+P+ S + I T ++ + +I+DGG + ST++++ Sbjct: 130 RAIVRALGNPIVSTSIYDEDEVIEYTTDPELIFEKWQNRVDVIVDGGYGG-NIPSTVIDL 188 Query: 184 QCEKKVRILRPGGLEIE 200 ++ + ++R G E Sbjct: 189 TGDEPI-LIREGKGSPE 204 >gi|323493845|ref|ZP_08098963.1| Sua5/YciO/YrdC family protein [Vibrio brasiliensis LMG 20546] gi|323311979|gb|EGA65125.1| Sua5/YciO/YrdC family protein [Vibrio brasiliensis LMG 20546] Length = 185 Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats. Identities = 46/185 (24%), Positives = 79/185 (42%), Gaps = 7/185 (3%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + KA L G IA PTE V+G+ D +P AI +L ++K+RP LI + Sbjct: 2 DNFDKALSALRNGEVIAYPTEGVFGVGCDPDSPQAIEKLLKLKQRPIEKGLILIAASYQQ 61 Query: 70 VKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + + LS L + WPGP+T V+ + + + + RV + Sbjct: 62 LLPYIDESQLSAEQLQQVQKSWPGPVTWVMPC--SDKVSDWVSGQYDSIAVRVSDHPLVQ 119 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 K+ +G PL SAN SGQ + + + ++ +++G S I + + Sbjct: 120 KMCNAFGKPLTSTSANLSGQPPCMTTEEVY-QQLGSQLVAVLEGQTGGREKPSEIRDAKT 178 Query: 186 EKKVR 190 + +R Sbjct: 179 SQVLR 183 >gi|322515423|ref|ZP_08068414.1| Sua5/YciO/YrdC/YwlC family protein [Actinobacillus ureae ATCC 25976] gi|322118546|gb|EFX90779.1| Sua5/YciO/YrdC/YwlC family protein [Actinobacillus ureae ATCC 25976] Length = 205 Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats. Identities = 53/192 (27%), Positives = 76/192 (39%), Gaps = 5/192 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A E + G I PT++ Y L AI R+ I+K P + SD+S Sbjct: 14 ARLINQAVEIIKNGGVIIYPTDSGYALGCAIGEKHAIDRIVAIRKLPENHNFTLVCSDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A V S L K P P T +L +T D+ KT RVP L Sbjct: 74 ELSTYALVTNQSYRLIKNNTPNPYTFILP--ATKDVPRRLMTKRKTIGIRVPDNAIALAL 131 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I G P+ S + + + + LII GG +G E T V E Sbjct: 132 IAELGEPILSCSLMLPDTEITESDPDEIREHLEHRVDLIIHGGY--LGQEPTTVIDLTED 189 Query: 188 KVRILRPGGLEI 199 RI+R G +I Sbjct: 190 SPRIIREGSGDI 201 >gi|294138840|ref|YP_003554818.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella violacea DSS12] gi|293325309|dbj|BAJ00040.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella violacea DSS12] Length = 185 Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats. Identities = 56/178 (31%), Positives = 79/178 (44%), Gaps = 7/178 (3%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 E ++ G IA PTE VYGL D N AI +L +K+RP LI SD S + + Sbjct: 11 EVIENGGVIAYPTEAVYGLGCDPDNDVAIEKLLALKQRPWQKGLILVASDYSQIAPYLDD 70 Query: 77 DPLSL-HLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYG 132 L+ LA F WPGP T ++ + S DI L N + RV + + G Sbjct: 71 TQLTEKQLAFAFSKWPGPFTFIMPIRS--DISKLLCGNFNSLAVRVSAHPGIQAICNKLG 128 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 PL SAN +GQ +V + I ++ G + STI++ K +R Sbjct: 129 KPLVSTSANITGQQPAMSVDEVTM-QFEGVIAGVVTGKLGCEANPSTIIDALSGKVLR 185 >gi|261867922|ref|YP_003255844.1| SUA5 protein [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413254|gb|ACX82625.1| SUA5 protein [Aggregatibacter actinomycetemcomitans D11S-1] Length = 207 Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats. Identities = 49/187 (26%), Positives = 82/187 (43%), Gaps = 7/187 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E L G I PT++ Y L + A+ R+ I++ P + SD+S + Sbjct: 17 INQAVEILRNGGVIVYPTDSGYALGCMIGDKHAMDRIVHIRQLPEGHNFTLVCSDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 ++ V + L K PG T +L L T+ KT RVP L++ Sbjct: 77 TYSLVTNSAYRLIKNNTPGRYTFILTATKELP-RRLMTSKRKTIGIRVPDNQIALDLLKA 135 Query: 131 YGHPLAIPSANRSGQISIT-NVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKK 188 G P+ S + +T + + + ++ LII GG +G E +T+V++ + Sbjct: 136 LGEPILSCSLMLPNEEHLTQSDPEEIRDRLEHQVDLIIHGGY--LGQEPTTVVDLTGDTP 193 Query: 189 VRILRPG 195 V ILR G Sbjct: 194 V-ILREG 199 >gi|317048305|ref|YP_004115953.1| Sua5/YciO/YrdC/YwlC family protein [Pantoea sp. At-9b] gi|316949922|gb|ADU69397.1| Sua5/YciO/YrdC/YwlC family protein [Pantoea sp. At-9b] Length = 206 Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats. Identities = 46/192 (23%), Positives = 79/192 (41%), Gaps = 4/192 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A ++L+ G I PT++ Y L A+ R+ I++ + D+S Sbjct: 14 PRLVNQAVDYLNKGGVIVYPTDSGYALGCRLEEKNAMERICRIRQLDGHHNFTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + ++ VD + + K PG T +L L KT RVP L Sbjct: 74 ELSTYSQVDNSAFRIIKNNTPGSYTFILKATKEVP-RRLMNDKRKTIGLRVPSNPVALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E P+ S G + + SI K + LIIDGG + +T+V++ + Sbjct: 133 LEALNEPMMSTSLMLPGNDFTESDPEEIQHSIGKLVDLIIDGG-TLGQQPTTVVDLTSDA 191 Query: 188 KVRILRPGGLEI 199 + I+R G +I Sbjct: 192 PI-IVREGVGDI 202 >gi|212710704|ref|ZP_03318832.1| hypothetical protein PROVALCAL_01771 [Providencia alcalifaciens DSM 30120] gi|212686401|gb|EEB45929.1| hypothetical protein PROVALCAL_01771 [Providencia alcalifaciens DSM 30120] Length = 206 Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats. Identities = 43/183 (23%), Positives = 74/183 (40%), Gaps = 5/183 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + ++ E L+ G + PT++ Y + A+ R+ I+K + + D+S Sbjct: 14 ARLISQSVEILNKGGVVVYPTDSGYAIGCRLEEKNALERICRIRKLDSNHNFTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD L K PG T +L L KT RVP + L Sbjct: 74 ELSNYAHVDNTVFRLIKNNTPGNYTFILKATKEVP-RRLMNEKRKTIGLRVPSNPIARDL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL-ESTIVNVQCE 186 +E G PL S G + + + K++ L+I GG IG +T+++ + Sbjct: 133 LEAVGEPLMSTSLILPGDDFTQSDPEEIRDLLDKQVDLVIHGGY--IGQKPTTVIDFTDD 190 Query: 187 KKV 189 V Sbjct: 191 TPV 193 >gi|325280506|ref|YP_004253048.1| Sua5/YciO/YrdC/YwlC family protein [Odoribacter splanchnicus DSM 20712] gi|324312315|gb|ADY32868.1| Sua5/YciO/YrdC/YwlC family protein [Odoribacter splanchnicus DSM 20712] Length = 202 Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats. Identities = 48/191 (25%), Positives = 87/191 (45%), Gaps = 7/191 (3%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSD 66 ++ + K E L AG I PT+T+Y + D N A++R+ ++K +P D Sbjct: 11 NTRDILKVVEVLKAGGIIIYPTDTIYAIGCDINNVKAVQRVCQLKNIKPEKANFSMICRD 70 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 +S + +A V+ + K PGP T VL +T + + KT R+P Sbjct: 71 LSNIAAYAKVNNEVFKVMKRNLPGPFTFVLP--ATNKLPNVMINRRKTIGIRIPDNYIVM 128 Query: 126 KLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 ++E G+PL S + + ++ K + L+IDGG + + ST+V+ Sbjct: 129 SIVEELGNPLLTTSVKAEDEVVEYMTDPELIHEKYEKLVDLVIDGGFGQ-NVASTVVDCT 187 Query: 185 CEKKVRILRPG 195 + ++ ++R G Sbjct: 188 -DDRIEVIRQG 197 >gi|312865283|ref|ZP_07725511.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus downei F0415] gi|311099394|gb|EFQ57610.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus downei F0415] Length = 199 Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats. Identities = 70/209 (33%), Positives = 110/209 (52%), Gaps = 12/209 (5%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + D AL+ L G + +PTETVYGL + + +A++++Y +K RPA + +V+ Sbjct: 1 MADLEALK---ATLAEGGAVVLPTETVYGLFAKALDESAVKKVYALKGRPADKAMNLNVA 57 Query: 66 DISMVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 + ++ P L L + F+PGPLT++L + + A L + FR+P Sbjct: 58 SYQDILDYSQDQPSYLEKLYQAFFPGPLTIIL--KANDKVPGWVNAGLDSVGFRLPQHPV 115 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 T++LI +G PL PSAN SGQ S +I++ K L DG I GL+STI+++ Sbjct: 116 TQELIAQFG-PLVGPSANISGQASGKVFANIMADFDQKVTGLADDGAI--QGLDSTILDL 172 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEY 212 K +ILR G + E L + EL+Y Sbjct: 173 SGTKP-KILRQGAISKEDLLEVV-PELKY 199 >gi|289167968|ref|YP_003446237.1| hypothetical protein smi_1125 [Streptococcus mitis B6] gi|288907535|emb|CBJ22372.1| conserved hypothetical protein [Streptococcus mitis B6] Length = 209 Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats. Identities = 58/197 (29%), Positives = 100/197 (50%), Gaps = 8/197 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + L+ G + +PTETVYGL + + + +Y++K+RP L +++ + + Sbjct: 11 MDRIRQELENGGAVVLPTETVYGLFAKALDEKVVNHVYQLKRRPRDKALNLNIASLEDIL 70 Query: 72 KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P L L + F PGPLT++L+ + + + L T FR+P T LI Sbjct: 71 NFSKNQPTYLQKLVETFLPGPLTIILE--ANDRVPYWVNSGLATVGFRMPSHPITLDLIR 128 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL PSAN SG+ S IL + + L D ++ G +STI+++ +K V Sbjct: 129 ETG-PLIGPSANISGRASGVTFAQILEDFDQEVLGLEDDSFLT--GQDSTILDLSGDK-V 184 Query: 190 RILRPGGLEIETLKRAI 206 +ILR G ++ E + + Sbjct: 185 KILRQGAIKREDILARL 201 >gi|261210663|ref|ZP_05924955.1| YrdC family protein [Vibrio sp. RC341] gi|262402465|ref|ZP_06079026.1| YrdC family protein [Vibrio sp. RC586] gi|260840148|gb|EEX66728.1| YrdC family protein [Vibrio sp. RC341] gi|262351247|gb|EEZ00380.1| YrdC family protein [Vibrio sp. RC586] Length = 206 Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 74/189 (39%), Gaps = 4/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A + G + PT++ Y + N + R+ +I++ + D+S Sbjct: 14 TRLINQAVAIIRNGGVVVYPTDSGYAVGCQLENKHGMERICQIRRLDDKHNFTLLCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD + L K PGP T + L KT RVP L Sbjct: 74 EISLYARVDNTAFRLLKNNTPGPYTFIFKGTKEVP-RRLMNEKRKTIGIRVPDNKIALDL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL S G + + S+ + +I++GG +T+++ + Sbjct: 133 LEALGEPLMSTSLILPGNDFTESDPEAIRDSLEHAVDVILNGGYLGQ-QPTTVIDF-SDD 190 Query: 188 KVRILRPGG 196 ++ + R G Sbjct: 191 EIVVARVGA 199 >gi|225435305|ref|XP_002285123.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|297746251|emb|CBI16307.3| unnamed protein product [Vitis vinifera] Length = 272 Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats. Identities = 69/203 (33%), Positives = 104/203 (51%), Gaps = 5/203 (2%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 + TD++A +A E + AG IA+PT+T+YG A D+ + A+ R+YEIK R +PL Sbjct: 59 VRPATDAHA-EEAIEAIKAGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAI 117 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 V D+ +++ A D L L PGP+T+VL + I L + RVP C Sbjct: 118 CVGDVLDIQRFAVTDHLPDGLLGSLLPGPVTVVLRRGELSIIEKSLNPGLDSIGVRVPDC 177 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STI 180 F + + LA+ SAN SGQ S +K ++ + + DGG+ G ST+ Sbjct: 178 DFIRVIAHGSETALALTSANLSGQPSSVCIKD--FENLWEHCAYVYDGGVLPSGRAGSTV 235 Query: 181 VNVQCEKKVRILRPGGLEIETLK 203 V++ K +ILRPG ET+ Sbjct: 236 VDLSRLGKYKILRPGSAMEETVA 258 >gi|300716950|ref|YP_003741753.1| hypothetical protein [Erwinia billingiae Eb661] gi|299062786|emb|CAX59906.1| Conserved uncharacterized protein [Erwinia billingiae Eb661] Length = 206 Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats. Identities = 48/189 (25%), Positives = 79/189 (41%), Gaps = 6/189 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E L+ G I PT++ Y L + +A+ R+ +I+K + D+S Sbjct: 14 PRLIKQAVELLNKGSVIVYPTDSGYALGCKLEDKSAMERICKIRKLDGNHNFTLVCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD + L K PG T +L L KT RVP L Sbjct: 74 ELSTYAHVDNTAFRLIKNNTPGNYTFILKATKEVP-RRLMNDKRKTIGLRVPSNPIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL-ESTIVNVQCE 186 +E P+ S G + + SI K + LII GG +G +T++++ E Sbjct: 133 LEALNEPMMSTSLMLPGNDFTESDPEAIQDSIGKLVDLIIHGGY--LGQHPTTVIDLT-E 189 Query: 187 KKVRILRPG 195 ++R G Sbjct: 190 NTPEVVREG 198 >gi|298370013|ref|ZP_06981329.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria sp. oral taxon 014 str. F0314] gi|298281473|gb|EFI22962.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria sp. oral taxon 014 str. F0314] Length = 242 Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats. Identities = 38/188 (20%), Positives = 71/188 (37%), Gaps = 5/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A + + G + PT++ Y L + A+ R+ I+K + L +D+ Sbjct: 50 ERLVKQAADIIRNGGVVVYPTDSCYALGCKLGDKAAMERILAIRKIDLKHHLTLMCADLR 109 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD K PG T +L L KT RVP L Sbjct: 110 ELGTYAKVDNAQFRQLKAATPGSYTFILQATKEVPNRTL-HPKRKTIGLRVPDNTIALSL 168 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ G PL + + + + + L+IDGG +T++++ Sbjct: 169 LQELGEPLLSCTLMLPEDDEPLTDPYEIRDRLEHAVDLVIDGGWCGT-EPTTVIDMTDGT 227 Query: 188 KVRILRPG 195 + +R G Sbjct: 228 VL--IREG 233 >gi|219850818|ref|YP_002465250.1| Sua5/YciO/YrdC/YwlC family protein [Methanosphaerula palustris E1-9c] gi|219545077|gb|ACL15527.1| Sua5/YciO/YrdC/YwlC family protein [Methanosphaerula palustris E1-9c] Length = 193 Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats. Identities = 54/187 (28%), Positives = 87/187 (46%), Gaps = 12/187 (6%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + +++A + L + PT+T+YGL D+ + A+ +YE K RP P+ VSD M Sbjct: 2 DRIKEAVKVLHRDGLVVYPTDTIYGLGADALSDEAVAAVYEAKHRPLAKPISIAVSDRDM 61 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + A V P++ + F PGP T+VL + + T R+P +LI Sbjct: 62 LAALAVVTPVAEQFIEAFLPGPFTVVL--KAKKVLPETLTGGTGMIGLRIPDHPIALELI 119 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 + P+ SAN SG + + L+ID G GL ST+V++ Sbjct: 120 REFDGPITATSANLSGGKDPVTINDV-----HVRYDLLIDAGR-LTGLPSTVVDLVD--- 170 Query: 189 VRILRPG 195 +R++RPG Sbjct: 171 MRMIRPG 177 >gi|293365354|ref|ZP_06612071.1| Sua5/YciO/YrdC family protein [Streptococcus oralis ATCC 35037] gi|322374349|ref|ZP_08048863.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus sp. C300] gi|291316804|gb|EFE57240.1| Sua5/YciO/YrdC family protein [Streptococcus oralis ATCC 35037] gi|321279849|gb|EFX56888.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus sp. C300] Length = 200 Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats. Identities = 61/193 (31%), Positives = 100/193 (51%), Gaps = 8/193 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + L+ G + +PTETVYGL + + A+ +Y++K+RP L +V+ + + Sbjct: 2 MDRIRQELEKGGAVVLPTETVYGLFAKALDEKAVDHVYKLKRRPRDKALNLNVAFLEDIL 61 Query: 72 KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P L L + F PGPLT++L+ + + + L T FR+P T LI Sbjct: 62 HFSKNQPTYLQKLVEAFLPGPLTIILE--ANDRVPYWVNSGLATVGFRMPSHPITLDLIR 119 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL PSAN SGQ S IL + + L D ++ G +STI+++ +K V Sbjct: 120 ETG-PLIGPSANISGQASGVTFAQILEDFDQEVLGLEDDAFLT--GQDSTILDLSGDK-V 175 Query: 190 RILRPGGLEIETL 202 +ILR G ++ E + Sbjct: 176 KILRQGAIKREDI 188 >gi|146300671|ref|YP_001195262.1| Sua5/YciO/YrdC/YwlC family protein [Flavobacterium johnsoniae UW101] gi|146155089|gb|ABQ05943.1| translation factor SUA5 [Flavobacterium johnsoniae UW101] Length = 206 Score = 169 bits (430), Expect = 4e-40, Method: Composition-based stats. Identities = 50/200 (25%), Positives = 86/200 (43%), Gaps = 13/200 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK---RPAMNPLICHVS 65 A+ K + L G + PT+TVYGL D N A+ ++ +IK A ICH Sbjct: 14 EAAIAKVVKVLQNGGLVIYPTDTVYGLGCDITNSRALEKIAKIKGVKLEKANFSFICH-- 71 Query: 66 DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GF 123 D+S + + +D + + K PGP T +L + P T RVP Sbjct: 72 DLSNLSDYVRQIDTSTFKILKRALPGPYTFILPGNNNL---PKEFKKKTTVGIRVPDNNI 128 Query: 124 TKKLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 +++ G+P+ S I T ++ + ++IDGG + STI++ Sbjct: 129 VLEIVRQLGNPIVSTSIRDEDDVIEYTTDPELIFEKWQNLVDMVIDGGYGD-NVGSTIID 187 Query: 183 VQCEKKVRILRPGGLEIETL 202 + + + ++R G +I+ L Sbjct: 188 LSEHEPI-VVREGKGDIDIL 206 >gi|318605611|emb|CBY27109.1| ycio family [Yersinia enterocolitica subsp. palearctica Y11] Length = 206 Score = 169 bits (430), Expect = 4e-40, Method: Composition-based stats. Identities = 41/189 (21%), Positives = 75/189 (39%), Gaps = 4/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ + L G + PT++ Y L + TA+ R+ I++ + D+S Sbjct: 14 PRLINQSVDVLRKGGVVVYPTDSGYALGCRLEDKTAMERICRIRQLDGNHNFTLVCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD + L K PG T + L KT RVP L Sbjct: 74 ELSTYAYVDNPAFRLIKNNTPGNYTFIFKATKEVP-RRLMNDKRKTIGLRVPSNPIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ G PL + G + + + K++ LII GG S +T++++ + Sbjct: 133 LDVLGEPLMSTTLMLPGNDFAESDPEEIKEHLGKQVDLIIHGG-SLGQQPTTVIDLT-DS 190 Query: 188 KVRILRPGG 196 ++R G Sbjct: 191 SPEVIRVGA 199 >gi|307703896|ref|ZP_07640837.1| yrdC domain protein [Streptococcus oralis ATCC 35037] gi|307622731|gb|EFO01727.1| yrdC domain protein [Streptococcus oralis ATCC 35037] Length = 199 Score = 169 bits (430), Expect = 4e-40, Method: Composition-based stats. Identities = 61/193 (31%), Positives = 100/193 (51%), Gaps = 8/193 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + L+ G + +PTETVYGL + + A+ +Y++K+RP L +V+ + + Sbjct: 1 MDRIRQELEKGGAVVLPTETVYGLFAKALDEKAVDHVYKLKRRPRDKALNLNVAFLEDIL 60 Query: 72 KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P L L + F PGPLT++L+ + + + L T FR+P T LI Sbjct: 61 HFSKNQPTYLQKLVEAFLPGPLTIILE--ANDRVPYWVNSGLATVGFRMPSHPITLDLIR 118 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL PSAN SGQ S IL + + L D ++ G +STI+++ +K V Sbjct: 119 ETG-PLIGPSANISGQASGVTFAQILEDFDQEVLGLEDDAFLT--GQDSTILDLSGDK-V 174 Query: 190 RILRPGGLEIETL 202 +ILR G ++ E + Sbjct: 175 KILRQGAIKREDI 187 >gi|308047752|ref|YP_003911318.1| translation factor SUA5 [Ferrimonas balearica DSM 9799] gi|307629942|gb|ADN74244.1| translation factor SUA5 [Ferrimonas balearica DSM 9799] Length = 187 Score = 169 bits (430), Expect = 4e-40, Method: Composition-based stats. Identities = 43/184 (23%), Positives = 75/184 (40%), Gaps = 7/184 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + G +A PTE V+GL D N A+ RL +IK+RP LI ++ + Sbjct: 7 VSEGAALMAKGGVVAYPTEAVFGLGCDPSNEEAVSRLLDIKQRPVEKGLILIAANYGQLL 66 Query: 72 KHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + L + WPGP T V+ + + T T RV L Sbjct: 67 PFVNDSALPDARREAVMARWPGPTTWVMPAQPS--VPGWVTGQFDTLAVRVTDHAIAADL 124 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +G P+ SAN +GQ + +L++ + + ++ G + S I++ ++ Sbjct: 125 CRAFGGPVVSTSANLTGQPPCRSADEVLAA-LGDRVDGVVMGDVGGRKDPSMILDAMTDQ 183 Query: 188 KVRI 191 R Sbjct: 184 VFRT 187 >gi|325578257|ref|ZP_08148392.1| Sua5/YciO/YrdC/YwlC family protein [Haemophilus parainfluenzae ATCC 33392] gi|325159993|gb|EGC72122.1| Sua5/YciO/YrdC/YwlC family protein [Haemophilus parainfluenzae ATCC 33392] Length = 207 Score = 169 bits (430), Expect = 4e-40, Method: Composition-based stats. Identities = 52/195 (26%), Positives = 86/195 (44%), Gaps = 7/195 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A E L G I PT++ Y L + A+ R+ I+K P + SD+S Sbjct: 14 ARLINQAVEILRQGGVIVYPTDSGYALGCMIGDKHAMDRIVAIRKLPEGHNFTLVCSDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A+V ++ L K PG T +L L T+ KT RVP L Sbjct: 74 ELSTYATVSNVAYRLIKNNTPGRYTFILTATKELP-RRLMTSKRKTIGLRVPDNQIALDL 132 Query: 128 IETYGHPLAIPSANRSGQISIT-NVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQC 185 ++ G P+ S +T + + + +++ LII GG +G E +T+V++ Sbjct: 133 LKALGEPILSCSLMLPDNEHMTYSDPEEIRECLERQVDLIIHGGY--LGQEPTTVVDLTE 190 Query: 186 EKKVRILRPGGLEIE 200 E V ILR G + Sbjct: 191 ESPV-ILREGSGSTD 204 >gi|52841673|ref|YP_095472.1| translation factor [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628784|gb|AAU27525.1| translation factor [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 221 Score = 169 bits (430), Expect = 4e-40, Method: Composition-based stats. Identities = 50/197 (25%), Positives = 87/197 (44%), Gaps = 6/197 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + LRKA ++ G I PT++ Y L N +A+ R+ +++ + + D+S Sbjct: 29 ARLLRKAVSIIEEGGLIVYPTDSGYALGCSLGNKSALERIRRLRQLDKHHNMTLVCRDLS 88 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCG-FTKK 126 + +A V L K F PG T +L+ +T ++ L +T RVP T Sbjct: 89 QLGTYAKVSNPIFRLLKAFTPGSYTFILN--ATHEVPRLMLHPKRRTLGLRVPDNTITLS 146 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+E PL + G + + + + +I LIIDGG +T+V++ + Sbjct: 147 LLECLEAPLMSTTLILPGAEAPLSEPEAIKDLLGNQIDLIIDGGNCGH-EPTTVVDLTGD 205 Query: 187 KKVRILRPGGLEIETLK 203 + I+R G + E K Sbjct: 206 YPI-IIREGKGDPEPFK 221 >gi|308274797|emb|CBX31396.1| Uncharacterized protein yciO [uncultured Desulfobacterium sp.] Length = 201 Score = 169 bits (430), Expect = 4e-40, Method: Composition-based stats. Identities = 52/188 (27%), Positives = 82/188 (43%), Gaps = 6/188 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + K + L IA PT+T YG+ D N AI ++Y +K+R +P S + Sbjct: 12 KRLISKVIDILKKDGVIAYPTDTYYGIGCDIMNKKAIEKIYLLKQREKNSPFSFMCSGLK 71 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A V + K PGP T VL+ + + + N KTA RVP L Sbjct: 72 NISDYAKVSNYAYKTMKRLLPGPYTFVLE--GSKLVPKIMLTNRKTAGIRVPNNIICLAL 129 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G+P+ SA N ++ I L+IDGG G S++V++ + Sbjct: 130 VEELGNPIITTSATMPDGTVFDN-PSLIHEYYKTRINLVIDGGPVP-GQPSSVVSLINDI 187 Query: 188 KVRILRPG 195 ++R G Sbjct: 188 P-EVIRQG 194 >gi|294783757|ref|ZP_06749081.1| Sua5/YciO/YrdC/YwlC family protein [Fusobacterium sp. 1_1_41FAA] gi|294480635|gb|EFG28412.1| Sua5/YciO/YrdC/YwlC family protein [Fusobacterium sp. 1_1_41FAA] Length = 217 Score = 169 bits (430), Expect = 4e-40, Method: Composition-based stats. Identities = 66/210 (31%), Positives = 103/210 (49%), Gaps = 10/210 (4%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 I I+D A E L G I PT+TVYGLA N +I +Y K R +PLI Sbjct: 10 ISDISDDKWTELASE-LKKGSLIIYPTDTVYGLASIVTNEQSINNIYLAKSRSFTSPLIA 68 Query: 63 HVSDISMVKKHASVDPLSL----HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 +S + V++ A++ + LA FWPG LT++L I + + T R Sbjct: 69 LLSSVDKVEEVATISDENREILEKLAHAFWPGALTVILKRKEH--IPSIMVSGGDTIGVR 126 Query: 119 VPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 +P K+I+ G LA SAN SG+ + + LS +I + +++DGG K+G Sbjct: 127 IPNLDLAIKIIDLAGGILATTSANISGEATPKSYNE-LSEAIKSRVDILVDGGECKLGEA 185 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAIS 207 STI+++ + +ILR G + + + + I Sbjct: 186 STIIDLTSDVP-KILRNGAISTDEITKIIG 214 >gi|148358974|ref|YP_001250181.1| translation factor [Legionella pneumophila str. Corby] gi|296107023|ref|YP_003618723.1| putative translation factor [Legionella pneumophila 2300/99 Alcoy] gi|148280747|gb|ABQ54835.1| translation factor [Legionella pneumophila str. Corby] gi|295648924|gb|ADG24771.1| putative translation factor [Legionella pneumophila 2300/99 Alcoy] Length = 206 Score = 169 bits (430), Expect = 4e-40, Method: Composition-based stats. Identities = 50/197 (25%), Positives = 87/197 (44%), Gaps = 6/197 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + LRKA ++ G I PT++ Y L N +A+ R+ +++ + + D+S Sbjct: 14 ARLLRKAVSIIEEGGLIVYPTDSGYALGCSLGNKSALERIRRLRQLDKHHNMTLVCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCG-FTKK 126 + +A V L K F PG T +L+ +T ++ L +T RVP T Sbjct: 74 QLGTYAKVSNPIFRLLKAFTPGSYTFILN--ATHEVPRLMLHPKRRTLGLRVPDNTITLS 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+E PL + G + + + + +I LIIDGG +T+V++ + Sbjct: 132 LLECLEAPLMSTTLILPGAEAPLSEPEAIKDLLGNQIDLIIDGGNCGH-EPTTVVDLTGD 190 Query: 187 KKVRILRPGGLEIETLK 203 V I+R G + E + Sbjct: 191 YPV-IIREGKGDPEPFR 206 >gi|332075636|gb|EGI86104.1| yrdC domain protein [Streptococcus pneumoniae GA17545] Length = 199 Score = 169 bits (430), Expect = 4e-40, Method: Composition-based stats. Identities = 55/192 (28%), Positives = 97/192 (50%), Gaps = 6/192 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + L+ G + +PTETVYGL + + A+ +Y++K+RP L +++ + + Sbjct: 1 MDRIRQELENGRAVVLPTETVYGLFAKALDEKAVDHVYQLKRRPRDKALNLNIASLEDIL 60 Query: 72 KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130 + P L L + F PGPLT++L+ + + + L T FR+P + Sbjct: 61 HFSKNQPAYLQKLVETFLPGPLTIILE--ANDRVPYWVNSGLATVGFRMPSHPITLDLIR 118 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 PL PSAN SGQ S IL + + L D ++ G +STI+++ +K V+ Sbjct: 119 VTGPLIGPSANISGQASGVTFNQILKDFDQEVLGLEDDAFLT--GQDSTIIDLSGDK-VK 175 Query: 191 ILRPGGLEIETL 202 ILR G ++ + + Sbjct: 176 ILRQGAIKRDDI 187 >gi|332161875|ref|YP_004298452.1| hypothetical protein YE105_C2253 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325666105|gb|ADZ42749.1| hypothetical protein YE105_C2253 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330860991|emb|CBX71264.1| uncharacterized protein yciO [Yersinia enterocolitica W22703] Length = 206 Score = 169 bits (430), Expect = 4e-40, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 76/189 (40%), Gaps = 4/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ + L G + PT++ Y L + TA+ R+ I++ + D+S Sbjct: 14 PRLINQSVDVLRKGGVVVYPTDSGYALGCRLEDKTAMERICRIRQLDGNHNFTLVCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD + L K PG T +L L KT RVP L Sbjct: 74 ELSTYAYVDNPAFRLIKNNTPGNYTFILKATKEVP-RRLMNDKRKTIGLRVPSNPIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ G PL + G + + + K++ LII GG S +T++++ + Sbjct: 133 LDVLGEPLMSTTLMLPGNDFAESDPEEIKEHLGKQVDLIIHGG-SLGQQPTTVIDLT-DS 190 Query: 188 KVRILRPGG 196 ++R G Sbjct: 191 SPEVIRVGA 199 >gi|145641202|ref|ZP_01796782.1| hypothetical protein CGSHiR3021_05354 [Haemophilus influenzae R3021] gi|145274039|gb|EDK13905.1| hypothetical protein CGSHiR3021_05354 [Haemophilus influenzae 22.4-21] gi|309973339|gb|ADO96540.1| Conserved hypothetical protein [Haemophilus influenzae R2846] Length = 207 Score = 169 bits (430), Expect = 4e-40, Method: Composition-based stats. Identities = 53/190 (27%), Positives = 82/190 (43%), Gaps = 7/190 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E L G I PT++ Y L + A+ R+ I+K P + SD+S + Sbjct: 17 INQAVEILQKGGVIVYPTDSGYALGCMMGDKHAMDRIVAIRKLPEGHNFTLVCSDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 +A V+ + L K PG T +L L T+ KT RVP L+ Sbjct: 77 TYARVNNTAYRLIKNNTPGRYTFILTATKELP-RRLMTSKRKTIGLRVPDNKIALDLLSA 135 Query: 131 YGHPLAIPSANRSGQISIT-NVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKK 188 G P+ S G+ T + + + ++ LII GG +G E +T+V++ E Sbjct: 136 LGEPILSCSLMLPGEEHTTQSDPEEIRDRLEHQVDLIIHGGY--LGQEPTTVVDLTEESP 193 Query: 189 VRILRPGGLE 198 V ILR G Sbjct: 194 V-ILREGSGS 202 >gi|257465550|ref|ZP_05629921.1| hypothetical protein AM202_03495 [Actinobacillus minor 202] gi|257451210|gb|EEV25253.1| hypothetical protein AM202_03495 [Actinobacillus minor 202] Length = 205 Score = 169 bits (430), Expect = 4e-40, Method: Composition-based stats. Identities = 46/192 (23%), Positives = 81/192 (42%), Gaps = 5/192 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A E + I PT++ Y L N +A+ R+ +I+K P + SD+S Sbjct: 14 PRLINQAVEIIKNDGVIVYPTDSGYALGCAIGNKSAMERIVKIRKLPENHNFTLVCSDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A V + L K P P T +L +T D+ KT RVP L Sbjct: 74 ELSNYAMVSNQAYRLIKNNVPNPYTFILP--ATKDVPRRLLTKRKTIGIRVPQNEIALAL 131 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I G P+ S + + + + +++ LII GG +T++++ + Sbjct: 132 ISALGEPILSCSLMLPDEEITQSDPEAIRDLLERQVDLIIHGGY-LGAEPTTVIDLTDDS 190 Query: 188 KVRILRPGGLEI 199 V I+R G ++ Sbjct: 191 PV-IIREGSGDL 201 >gi|87306381|ref|ZP_01088528.1| probable low molecular weight protein-tyrosine-phosphatase ywlE [Blastopirellula marina DSM 3645] gi|87290560|gb|EAQ82447.1| probable low molecular weight protein-tyrosine-phosphatase ywlE [Blastopirellula marina DSM 3645] Length = 380 Score = 169 bits (430), Expect = 4e-40, Method: Composition-based stats. Identities = 74/277 (26%), Positives = 114/277 (41%), Gaps = 17/277 (6%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + + +A + L G +A PTETVYG+AV + N AI RL E K RP P + Sbjct: 16 DVIHRAVQALAEGQVVAFPTETVYGVAVSALNSGAIDRLMEAKGRPKNQPFALAIRSKDE 75 Query: 70 VKKHA-SVDPLSLHLAKLFWPGPLTLVLD---------LLSTTDIHPLSTANLKTACFRV 119 + + PL LA WPGP+TLVL L + I ++ + R+ Sbjct: 76 LADYVPQATPLMKRLATRCWPGPVTLVLPCDDPRSVVQSLPASVIPAIAPSGF--VGLRI 133 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P ++ + PLA+ SANRSGQ + + ++ + L++D G + S Sbjct: 134 PSHDLIQEAMRLLPGPLALTSANRSGQPDAVRGSEV-TEALGDALGLVLDCGKCRYSQPS 192 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISV-ELEYCVDETS-TPQSPGMLKSHYAPRSQV 236 T+V V V ILR G + + LKR S + C T +P + +++ H A R Sbjct: 193 TVVRVVGNH-VEILRSGVVSEKILKRLSSYCVVFVCTGNTCRSPMAEVLMQKHAAERFGC 251 Query: 237 RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTG 273 +L + A + G Sbjct: 252 KLEELDARGFIVASAGLAAFPGGRAAAEAIKVMGDRG 288 >gi|261381413|ref|ZP_05985986.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria subflava NJ9703] gi|284795602|gb|EFC50949.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria subflava NJ9703] Length = 206 Score = 169 bits (430), Expect = 4e-40, Method: Composition-based stats. Identities = 40/189 (21%), Positives = 76/189 (40%), Gaps = 5/189 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A + + +G I PT++ Y L + A+ R+ I+K + L +D+S + Sbjct: 17 IKQAADIVRSGGVIVYPTDSCYALGCKLGDKNAMERILTIRKIDQKHHLTLMCADLSELG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIET 130 +A VD K PG T +L L KT RVP L++ Sbjct: 77 TYAKVDNAQFRQLKAATPGSYTFILQATKEVPNRTL-HPKRKTIGLRVPDNATALALLQE 135 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G P+ + + + + + L+IDGG +T++++ ++ Sbjct: 136 LGEPILSCTLMLPEDEEPLTDPYEIRDRLEHAVDLVIDGGWCGT-EPTTVIDMTDGTEL- 193 Query: 191 ILRPGGLEI 199 +R G +I Sbjct: 194 -IRQGKGDI 201 >gi|90416537|ref|ZP_01224468.1| hypothetical protein GB2207_05027 [marine gamma proteobacterium HTCC2207] gi|90331736|gb|EAS46964.1| hypothetical protein GB2207_05027 [marine gamma proteobacterium HTCC2207] Length = 204 Score = 169 bits (430), Expect = 4e-40, Method: Composition-based stats. Identities = 44/188 (23%), Positives = 75/188 (39%), Gaps = 4/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + KA + G I PT++VY + + A+ R+ I++ + D+S Sbjct: 14 QRLIAKAAAIVRKGGVIVYPTDSVYAIGCHIGDKQAMDRIRSIRQLDKNHNFTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 + +A VD + K PGP T +L S L KT RVP + L Sbjct: 74 ELASYARVDNSAFRSLKAQTPGPFTFILPATSEVP-RRLMHPKRKTIGLRVPDSPIAQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ G P+ + G + + + +++ + ++IDGG GLE T V Sbjct: 133 LDELGEPMMSVTLILPGDEYPLSDPYDIRAALEAHVDVLIDGGHC--GLEPTTVVDMTGP 190 Query: 188 KVRILRPG 195 + R G Sbjct: 191 VPEVTRQG 198 >gi|54294522|ref|YP_126937.1| hypothetical protein lpl1598 [Legionella pneumophila str. Lens] gi|53754354|emb|CAH15838.1| hypothetical protein lpl1598 [Legionella pneumophila str. Lens] gi|307610146|emb|CBW99692.1| hypothetical protein LPW_14601 [Legionella pneumophila 130b] Length = 206 Score = 169 bits (430), Expect = 4e-40, Method: Composition-based stats. Identities = 50/197 (25%), Positives = 87/197 (44%), Gaps = 6/197 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + LRKA ++ G I PT++ Y L N +A+ R+ +++ + + D+S Sbjct: 14 ARLLRKAVSIIEEGGLIVYPTDSGYALGCSLGNKSALERIRRLRQLDKHHNMTLVCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCG-FTKK 126 + +A V L K F PG T +L+ +T ++ L +T RVP T Sbjct: 74 QLGTYAKVSNPIFRLLKAFTPGSYTFILN--ATHEVPRLMLHPKRRTLGLRVPDNTITLS 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+E PL + G + + + + +I LIIDGG +T+V++ + Sbjct: 132 LLECLEAPLMSTTLILPGAEAPLSEPEAIKDLLGNQIDLIIDGGNCGH-EPTTVVDLTGD 190 Query: 187 KKVRILRPGGLEIETLK 203 + I+R G + E K Sbjct: 191 YPI-IIREGKGDPEPFK 206 >gi|74317545|ref|YP_315285.1| putative translation factor Sua5 [Thiobacillus denitrificans ATCC 25259] gi|74057040|gb|AAZ97480.1| putative translation factor Sua5 [Thiobacillus denitrificans ATCC 25259] Length = 207 Score = 169 bits (430), Expect = 4e-40, Method: Composition-based stats. Identities = 44/197 (22%), Positives = 77/197 (39%), Gaps = 4/197 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++ + L G I PT++ Y L + A RL ++ + L D+S Sbjct: 14 PRLIQQTVDILKRGGVIVYPTDSCYALGCHIGDKEAAMRLLSVRGLDTGHDLTLVCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + ++A VD L K PGP T +L L T RVP + L Sbjct: 74 ELGRYAQVDNAQFRLLKAHTPGPYTFILRGTREVP-RRLLHKRHDTIGLRVPAHPLVQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G P+ + G+ + + ++ L+IDGG + +T+V++ E Sbjct: 133 LEGLGEPILSSTLLLYGEDVPLTEPWEIRERLEHQVDLVIDGGACGL-TPTTVVDLTAET 191 Query: 188 KVRILRPGGLEIETLKR 204 ++R G E + Sbjct: 192 PA-VVRYGKGEASAFEA 207 >gi|197285200|ref|YP_002151072.1| dsRNA-binding protein [Proteus mirabilis HI4320] gi|227355625|ref|ZP_03840019.1| RNA binding protein [Proteus mirabilis ATCC 29906] gi|194682687|emb|CAR42839.1| putative dsRNA-binding protein [Proteus mirabilis HI4320] gi|227164232|gb|EEI49125.1| RNA binding protein [Proteus mirabilis ATCC 29906] Length = 206 Score = 169 bits (430), Expect = 4e-40, Method: Composition-based stats. Identities = 46/193 (23%), Positives = 83/193 (43%), Gaps = 6/193 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + ++ + L G + PT++ Y + N A+ R+ I++ + D+S Sbjct: 14 ARLIEQSADVLRKGGVVIYPTDSGYAIGCCLDNKDAMTRICRIRQLDKHHNFTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVP-CGFTKK 126 + +A VD + L K PG T +L +T D+ L KT RVP Sbjct: 74 EIATYAYVDNVVFRLIKNNTPGNYTFIL--KATKDVPKRLMNDKRKTIGLRVPSNPIALA 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+E G PL S G + ++ + K++ L+I GG +T++++ + Sbjct: 132 LLENIGEPLMSTSLILPGNDFAESDPEEINDLLGKQVDLVIHGGYLGQ-KPTTVIDLTED 190 Query: 187 KKVRILRPGGLEI 199 V I+R G +I Sbjct: 191 SPV-IVREGMGDI 202 >gi|149910322|ref|ZP_01898965.1| Putative Sua5/YciO/YrdC family protein [Moritella sp. PE36] gi|149806570|gb|EDM66538.1| Putative Sua5/YciO/YrdC family protein [Moritella sp. PE36] Length = 195 Score = 169 bits (430), Expect = 4e-40, Method: Composition-based stats. Identities = 49/191 (25%), Positives = 83/191 (43%), Gaps = 7/191 (3%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 +++ +S A+ A L IA PTE V+GL D N A++RL IK+RP LI Sbjct: 8 ITVNNSAAINNAVAALHTQQVIAYPTEAVFGLGCDPMNELAVQRLLTIKQRPVEKGLILI 67 Query: 64 VSDISMVKKHASVDPLSL---HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 ++++ + + + LS K WPGP T V+ + + T + RV Sbjct: 68 AANLAQLNDYVDLTRLSATQIDKIKQTWPGPATWVMP--AKAQVPKWLTGQFDSIAVRVS 125 Query: 121 CGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + L +G P+ SAN +G + +S + + I+D + ++ +T Sbjct: 126 AHPTVQALCLAFGGPITSTSANLTGLTPCITAAEV-ASQLELLLGAIVDEAVGELAQPTT 184 Query: 180 IVNVQCEKKVR 190 I + K R Sbjct: 185 ITDALTGKIYR 195 >gi|262066500|ref|ZP_06026112.1| Sua5/YciO/YrdC/YwlC family protein [Fusobacterium periodonticum ATCC 33693] gi|291379804|gb|EFE87322.1| Sua5/YciO/YrdC/YwlC family protein [Fusobacterium periodonticum ATCC 33693] Length = 217 Score = 169 bits (430), Expect = 5e-40, Method: Composition-based stats. Identities = 64/210 (30%), Positives = 103/210 (49%), Gaps = 10/210 (4%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 I I+D A E L G I PT+TVYGLA N +I +Y K R +PLI Sbjct: 10 ISDISDDKWTELASE-LKKGSLIIYPTDTVYGLASIVTNEQSINNIYLAKSRSFTSPLIA 68 Query: 63 HVSDISMVKKHASVDPLSLHLAKL----FWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 +S + V++ A++ + + + FWPG LT++L I + + T R Sbjct: 69 LLSSVDKVEEVATISDENREILEKLAHTFWPGALTVILKR--KQHIPSIMVSGGDTIGVR 126 Query: 119 VPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 +P K+I+ G LA SAN SG+ + + LS +I + +++DGG K+G Sbjct: 127 IPNLDLAIKIIDLAGGILATTSANISGEATPKSYNE-LSEAIKSRVDILVDGGECKLGEA 185 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAIS 207 STI+++ + +ILR G + + + + I Sbjct: 186 STIIDLTSDVP-KILRNGAISTDEITKIIG 214 >gi|15902970|ref|NP_358520.1| hypothetical protein spr0926 [Streptococcus pneumoniae R6] gi|15458534|gb|AAK99730.1| Conserved hypothetical protein [Streptococcus pneumoniae R6] Length = 203 Score = 169 bits (429), Expect = 5e-40, Method: Composition-based stats. Identities = 61/197 (30%), Positives = 102/197 (51%), Gaps = 8/197 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + L+ G + +PTETVYGL + + A+ +Y++K+RP L +++ + Sbjct: 5 MDRIRQELEKGGAVVLPTETVYGLFSKALDEKAVDHVYQLKRRPRDKALNLNIASFEDIL 64 Query: 72 KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P L L + F PGPLT++L+ + + ++L T FR+P T LI Sbjct: 65 HFSKNQPAYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIR 122 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL PSAN SGQ S + IL + + L D ++ G +STIV++ +K V Sbjct: 123 ETG-PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGDK-V 178 Query: 190 RILRPGGLEIETLKRAI 206 +ILR G ++ E + + Sbjct: 179 KILRQGAIKREDILARL 195 >gi|270292699|ref|ZP_06198910.1| Sua5/YciO/YrdC family protein [Streptococcus sp. M143] gi|270278678|gb|EFA24524.1| Sua5/YciO/YrdC family protein [Streptococcus sp. M143] Length = 200 Score = 169 bits (429), Expect = 5e-40, Method: Composition-based stats. Identities = 61/197 (30%), Positives = 102/197 (51%), Gaps = 8/197 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + L+ G + +PTETVYGL + + A+ +Y++K+RP L +V+ + + Sbjct: 2 MDRIRQELEKGGAVVLPTETVYGLFAKALDEKAVDHVYQLKRRPRDKALNLNVAYLEDIL 61 Query: 72 KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P L L + F PGPLT++L+ + + + L T FR+P T LI+ Sbjct: 62 HFSKNQPTYLQKLVETFLPGPLTIILE--ANDRVPYWVNSGLATVGFRMPSHPITLDLIQ 119 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL PSAN SGQ S IL + + L D ++ G +STI+++ +K V Sbjct: 120 ETG-PLIGPSANISGQASGVTFAQILEDFDQEVLGLEDDAFLT--GQDSTILDLSGDK-V 175 Query: 190 RILRPGGLEIETLKRAI 206 +ILR G ++ E + + Sbjct: 176 KILRQGAIKREDILARL 192 >gi|145633071|ref|ZP_01788803.1| hypothetical protein CGSHi3655_05899 [Haemophilus influenzae 3655] gi|144986297|gb|EDJ92876.1| hypothetical protein CGSHi3655_05899 [Haemophilus influenzae 3655] Length = 207 Score = 169 bits (429), Expect = 5e-40, Method: Composition-based stats. Identities = 54/190 (28%), Positives = 82/190 (43%), Gaps = 7/190 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E L G I PT++ Y L + A+ R+ I+K P + SD+S + Sbjct: 17 INQAVEILQKGGVIVYPTDSGYALGCMMGDKHAMDRIVAIRKLPEGHNFTLVCSDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 +A V+ + L K PG T +L L T+ KT RVP L+ Sbjct: 77 TYARVNNTAYRLIKNNTPGRYTFILTATKELP-RRLMTSKRKTIGLRVPDNKIALDLLSA 135 Query: 131 YGHPLAIPSANRSGQISIT-NVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKK 188 G P+ S G+ T + + + +I LII GG +G E +T+V++ E Sbjct: 136 LGEPILSCSLMLPGEEHTTQSDPEEIRDRLEHQIDLIIHGGY--LGQEPTTVVDLTEESP 193 Query: 189 VRILRPGGLE 198 V ILR G Sbjct: 194 V-ILREGSGS 202 >gi|52425092|ref|YP_088229.1| SUA5 protein [Mannheimia succiniciproducens MBEL55E] gi|52307144|gb|AAU37644.1| SUA5 protein [Mannheimia succiniciproducens MBEL55E] Length = 207 Score = 169 bits (429), Expect = 5e-40, Method: Composition-based stats. Identities = 51/192 (26%), Positives = 84/192 (43%), Gaps = 7/192 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + L G I PT++ Y L + A+ R+ +I+ P + SD+S + Sbjct: 17 INQAVDILRNGGVIVYPTDSGYALGCMIGDKRAMDRIVQIRHLPEGHNFTLVCSDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 ++ V + L K PG T +L L T+ KT RVP L+ T Sbjct: 77 TYSLVTNTAYRLIKNNTPGRYTFILTATKELP-RRLMTSKRKTIGIRVPDNQIALDLLRT 135 Query: 131 YGHPLAIPSANRSGQISIT-NVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKK 188 G P+ S + IT + + + ++ LII GG +G E +T+V++ E Sbjct: 136 LGEPILSCSLMLPNEEHITQSDPEEIRDRLEHQVDLIIHGGY--LGQEPTTVVDLTEETP 193 Query: 189 VRILRPGGLEIE 200 V ILR G ++ Sbjct: 194 V-ILREGSGPLD 204 >gi|121997386|ref|YP_001002173.1| Sua5/YciO/YrdC/YwlC family protein [Halorhodospira halophila SL1] gi|121588791|gb|ABM61371.1| translation factor SUA5 [Halorhodospira halophila SL1] Length = 208 Score = 169 bits (429), Expect = 5e-40, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 79/188 (42%), Gaps = 4/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A + L G IA PT++ Y L + A+ R+ EI++ + D+ Sbjct: 14 QRLINQAVQILADGGVIAYPTDSSYALGCRLGDKAALDRIREIRRLDNSHNFTMACKDLK 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKL 127 + +A ++ + L K PGP T +L S L KT RVP + L Sbjct: 74 DIGTYAKMENYAYRLLKSHTPGPYTFILRATSEVP-RRLQHPKRKTIGIRVPDHPASRAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + T G PL + G N + I K I ++ GG + G+ ST++++ E Sbjct: 133 LNTLGEPLMSVTLQMPGDDMPLNDPEAIQERIGKLIDAVVAGGPTGGGV-STVIDLTGE- 190 Query: 188 KVRILRPG 195 ++R G Sbjct: 191 AAEVIREG 198 >gi|269138888|ref|YP_003295589.1| hypothetical protein ETAE_1537 [Edwardsiella tarda EIB202] gi|267984549|gb|ACY84378.1| hypothetical protein ETAE_1537 [Edwardsiella tarda EIB202] gi|304558874|gb|ADM41538.1| hypothetical protein ETAF_1426 [Edwardsiella tarda FL6-60] Length = 206 Score = 169 bits (429), Expect = 5e-40, Method: Composition-based stats. Identities = 40/196 (20%), Positives = 78/196 (39%), Gaps = 4/196 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++ E L G I PT++ Y L A+ R+ I++ + + D+S Sbjct: 14 PRLIKQVVEVLHKGGVIVYPTDSGYALGCMLEEKNAMERICRIRRIDSNHNFTLVCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD + L K PG T +L L + KT RVP + L Sbjct: 74 ELSSYAFVDNAAFRLLKNNTPGGYTFILKASKEVP-RRLMSEKRKTIGLRVPSNPIAQDL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + + + + K++ L+I GG +T++++ + Sbjct: 133 LAELGEPLMSTTLMLPDSEFAESDPEEIQERLGKQVDLVIHGGYLGQ-QPTTVIDLTDDT 191 Query: 188 KVRILRPGGLEIETLK 203 + ++R G + + + Sbjct: 192 PL-VVRVGAGDPKPFQ 206 >gi|148988474|ref|ZP_01819921.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae SP6-BS73] gi|149019618|ref|ZP_01834937.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae SP23-BS72] gi|147926155|gb|EDK77229.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae SP6-BS73] gi|147930993|gb|EDK81973.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae SP23-BS72] Length = 199 Score = 169 bits (429), Expect = 5e-40, Method: Composition-based stats. Identities = 61/197 (30%), Positives = 102/197 (51%), Gaps = 8/197 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + L+ G + +PTETVYGL + + A+ +Y++K+RP L +++ + Sbjct: 1 MDRIRQELENGGAVVLPTETVYGLFSKALDEKAVDHVYQLKRRPRDKALNLNIASFEDIL 60 Query: 72 KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P L L + F PGPLT++L+ + + ++L T FR+P T LI Sbjct: 61 HFSKNQPAYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIR 118 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL PSAN SGQ S + IL + + L D ++ G +STIV++ +K V Sbjct: 119 ETG-PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGDK-V 174 Query: 190 RILRPGGLEIETLKRAI 206 +ILR G ++ E + + Sbjct: 175 KILRQGAIKREDILARL 191 >gi|332307257|ref|YP_004435108.1| Sua5/YciO/YrdC/YwlC family protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174586|gb|AEE23840.1| Sua5/YciO/YrdC/YwlC family protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 206 Score = 169 bits (429), Expect = 5e-40, Method: Composition-based stats. Identities = 42/188 (22%), Positives = 82/188 (43%), Gaps = 4/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +++ACE + +G + PT++ Y + + A+ ++ I++ + D+S Sbjct: 14 TRLIKQACELIHSGEVVVYPTDSGYSIGCHMDDKNALEQICRIRQIGKDHNFTLMCRDMS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + ++A VD + + K PGP T +L L +T RVP L Sbjct: 74 ELSEYARVDNAAFRMIKNNTPGPYTFILKATKEVP-KRLQNPKRRTIGIRVPDNAIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G P+ + +I + + + K++ LII GG +T+V++ + Sbjct: 133 LEELGEPMMSTTLILPSEIVAESDPDEIRDKLEKQVGLIIHGGFLGE-QPTTVVDLSEGE 191 Query: 188 KVRILRPG 195 V I+R G Sbjct: 192 PV-IIRQG 198 >gi|301156160|emb|CBW15631.1| conserved protein [Haemophilus parainfluenzae T3T1] Length = 207 Score = 169 bits (429), Expect = 5e-40, Method: Composition-based stats. Identities = 52/195 (26%), Positives = 85/195 (43%), Gaps = 7/195 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A E L G I PT++ Y L + A+ R+ I+K P + SD+S Sbjct: 14 ARLINQAVEILRQGGVIVYPTDSGYALGCMIGDKHAMDRIVAIRKLPEGHNFTLVCSDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A+V + L K PG T +L L T+ KT RVP L Sbjct: 74 ELSTYATVSNSAYRLIKNNTPGRYTFILTATKELP-RRLMTSKRKTIGLRVPDNQIALDL 132 Query: 128 IETYGHPLAIPSANRSGQISIT-NVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQC 185 ++ G P+ S +T + + + +++ LII GG +G E +T+V++ Sbjct: 133 LKALGEPILSCSLMLPDNEHMTYSDPEEIRECLERQVDLIIHGGY--LGQEPTTVVDLTE 190 Query: 186 EKKVRILRPGGLEIE 200 E V ILR G + Sbjct: 191 ESPV-ILREGSGSTD 204 >gi|256822097|ref|YP_003146060.1| Sua5/YciO/YrdC/YwlC family protein [Kangiella koreensis DSM 16069] gi|256795636|gb|ACV26292.1| Sua5/YciO/YrdC/YwlC family protein [Kangiella koreensis DSM 16069] Length = 207 Score = 169 bits (429), Expect = 5e-40, Method: Composition-based stats. Identities = 45/208 (21%), Positives = 83/208 (39%), Gaps = 9/208 (4%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 Q++ I N + + + G + PT++ Y L + A+ R+ +I+ Sbjct: 3 QLIEIHPENPQPRLVSQIVAIIRNGGVVVYPTDSGYALGCHIGDKKALDRIRQIRDLEKD 62 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 + D+S + +A VD + L K PGP T +L + + L KT Sbjct: 63 HNFTLVCRDLSELAFYARVDNTAFRLIKNNTPGPYTFILRATAEVP-NRLKHPKKKTIGI 121 Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISIT-NVKHILSSSICKEIPLIIDGGISKIG 175 RVP ++ ++E G P+ S GQ + + + + +IDGG Sbjct: 122 RVPDNAISQAILEALGEPMMNTSLILPGQDEGEVLAPYEIFDELNGRVDAVIDGGYCGH- 180 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLK 203 E+T+V++ I+R G + + Sbjct: 181 QETTVVDMTSGYP-EIIRYGAGDATVFE 207 >gi|225075954|ref|ZP_03719153.1| hypothetical protein NEIFLAOT_00979 [Neisseria flavescens NRL30031/H210] gi|224952669|gb|EEG33878.1| hypothetical protein NEIFLAOT_00979 [Neisseria flavescens NRL30031/H210] Length = 206 Score = 169 bits (429), Expect = 5e-40, Method: Composition-based stats. Identities = 40/189 (21%), Positives = 76/189 (40%), Gaps = 5/189 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A + + +G I PT++ Y L + A+ R+ I+K + L +D+S + Sbjct: 17 IKQAADIVRSGGVIVYPTDSCYALGCKLGDKNAMERILTIRKIDQKHHLTLMCADLSELG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIET 130 +A VD K PG T +L L KT RVP L++ Sbjct: 77 TYAKVDNAQFRQLKAATPGSYTFILQATKEVPNRTL-HPKRKTIGLRVPDNATALALLQE 135 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G P+ + + + + + L+IDGG +T++++ ++ Sbjct: 136 LGEPILSCTLMLPEDDEPLTDPYEIRDRLEHAVDLVIDGGWCGT-EPTTVIDMTDGTEL- 193 Query: 191 ILRPGGLEI 199 +R G +I Sbjct: 194 -IRQGKGDI 201 >gi|240948953|ref|ZP_04753309.1| hypothetical protein AM305_08629 [Actinobacillus minor NM305] gi|240296768|gb|EER47379.1| hypothetical protein AM305_08629 [Actinobacillus minor NM305] Length = 205 Score = 169 bits (429), Expect = 5e-40, Method: Composition-based stats. Identities = 46/192 (23%), Positives = 81/192 (42%), Gaps = 5/192 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A E + I PT++ Y L N +A+ R+ +I+K P + SD+S Sbjct: 14 PRLINQAVEIIKNDGVIIYPTDSGYALGCAIGNKSAMERIVKIRKLPENHNFTLVCSDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A V + L K P P T +L +T D+ KT RVP L Sbjct: 74 ELSNYAMVSNQAYRLIKNNVPNPYTFILP--ATKDVPRRLLTKRKTIGIRVPQNEIALAL 131 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I G P+ S + + + + +++ LII GG +T++++ + Sbjct: 132 ISALGEPILSCSLMLPDEEITQSDPEAIRDLLERQVDLIIHGGY-LGAEPTTVIDLTDDS 190 Query: 188 KVRILRPGGLEI 199 V I+R G ++ Sbjct: 191 PV-IIREGSGDL 201 >gi|254291086|ref|ZP_04961883.1| Sua5/YciO/YrdC family protein [Vibrio cholerae AM-19226] gi|150422931|gb|EDN14881.1| Sua5/YciO/YrdC family protein [Vibrio cholerae AM-19226] Length = 188 Score = 169 bits (429), Expect = 5e-40, Method: Composition-based stats. Identities = 53/190 (27%), Positives = 86/190 (45%), Gaps = 10/190 (5%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 L++A + L G IA PTE V+GL D N TA+ RL IK+RP +I + + Sbjct: 5 ENLQQAMDALRKGCVIAYPTEGVFGLGCDPDNQTAMLRLLAIKQRPVEKGVILIAASYAQ 64 Query: 70 VKKHASVDPLSLHLA---KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 ++ + L+ WP PLT V+ ++ D T RV + Sbjct: 65 LRPYVDETQLTAEQLTQVLASWPAPLTWVMP--ASGDTPSWVRGQFDTVAVRVSDHPVVQ 122 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 KL +G PL SAN SGQ + + ++ + +I ++++G S S I + + Sbjct: 123 KLCLAFGKPLTSTSANLSGQPACVTQQEVMV-QLGNQIAVVVEGKTSGRHGPSEIRDARS 181 Query: 186 EKKVRILRPG 195 +++LR G Sbjct: 182 ---LQVLRQG 188 >gi|237807720|ref|YP_002892160.1| Sua5/YciO/YrdC/YwlC family protein [Tolumonas auensis DSM 9187] gi|237499981|gb|ACQ92574.1| Sua5/YciO/YrdC/YwlC family protein [Tolumonas auensis DSM 9187] Length = 206 Score = 169 bits (429), Expect = 5e-40, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 78/189 (41%), Gaps = 4/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A L G I PT++ Y L + +A+ ++ I++ + +D+S Sbjct: 14 TRLISQAVGILRQGGVIIYPTDSGYALGCMMGDKSALEKICRIRQLEDEHNFTLLCNDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A +D + L K PG T +L L KT RVP + L Sbjct: 74 ELSVYAKIDNTAFRLIKNNTPGAYTFILKATKEVP-RRLMNEKKKTIGIRVPTNNIAQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + GQ + K + LIIDGG ++ +T+++ ++ Sbjct: 133 LTELGEPLMSSTLILPGQALAEADPEEFRGQLEKVVDLIIDGG-TQGAQPTTVIDFSDDE 191 Query: 188 KVRILRPGG 196 +++R G Sbjct: 192 P-KVVRFGA 199 >gi|77360238|ref|YP_339813.1| RNA binding protein [Pseudoalteromonas haloplanktis TAC125] gi|76875149|emb|CAI86370.1| putative RNA binding protein with YrdC/RibB domain [Pseudoalteromonas haloplanktis TAC125] Length = 206 Score = 169 bits (429), Expect = 5e-40, Method: Composition-based stats. Identities = 47/196 (23%), Positives = 79/196 (40%), Gaps = 4/196 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S +++A + + G + PT++ Y + + N A R+ I+ + D+S Sbjct: 14 SRLIQQAADIIKQGGVVVYPTDSGYAIGCNIGNKQAKERIERIRGIEKHHNFTLVCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGFTKKL 127 + +A VD + L K PGP T + L KT RV L Sbjct: 74 ELSTYARVDNQTFRLIKNNTPGPYTFIFKGTKEVP-KRLLNDKKKTIGIRVIAHPIACAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL S G+ + + + K + LII GG +T+V++ E Sbjct: 133 LEELGEPLMSCSLILPGEEYTESDPDEIIERLDKHVDLIIHGGYLAE-QATTVVDL-SED 190 Query: 188 KVRILRPGGLEIETLK 203 +V+ILR G + + Sbjct: 191 EVQILRVGCGDTSPFE 206 >gi|312278144|gb|ADQ62801.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus thermophilus ND03] Length = 201 Score = 169 bits (429), Expect = 6e-40, Method: Composition-based stats. Identities = 58/196 (29%), Positives = 100/196 (51%), Gaps = 8/196 (4%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 ++ E L+ G + +PTETVYGL + + A+ +YE+K RP + +V+ + Sbjct: 6 KQLREILNNGEAVVLPTETVYGLFAKALDEKAVNYVYELKNRPRDKAMNLNVASYEDILF 65 Query: 73 HASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 ++ P L L F PGPLT++L + + + L T FR+P T++LI+ Sbjct: 66 YSKEQPKYLKQLYDAFLPGPLTIIL--KANDQVPRWINSGLATVGFRLPNHPVTRELIQA 123 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G PL PSAN+SG+ S + + + ++ D + +G++STI+++ R Sbjct: 124 EG-PLIGPSANKSGKESGRHFDD-IRAQFDFQVTGYQDDN-ALLGVDSTILDLSVS-PAR 179 Query: 191 ILRPGGLEIETLKRAI 206 ILR G + + L A+ Sbjct: 180 ILRQGKITKDDLLAAL 195 >gi|52548507|gb|AAU82356.1| putative translation factor [uncultured archaeon GZfos17A3] Length = 241 Score = 169 bits (429), Expect = 6e-40, Method: Composition-based stats. Identities = 55/201 (27%), Positives = 93/201 (46%), Gaps = 11/201 (5%) Query: 5 SITD-SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 I D + +R A + G + PTETVYGL D+ + A+R +Y+IK+R A P+ Sbjct: 19 DINDIEDQIRTATAIIKHGGMVVYPTETVYGLGADAFSEAAVRNVYKIKRRAATQPISIA 78 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 VS M+ + A +D + + PGP+T++ + + TA + R P Sbjct: 79 VSSFEMLHEVADIDSEYVEIIAELLPGPVTILF--KKKDIVPAILTAASEVIGVRFPDNE 136 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSS-SICKEIPLIIDGGISKIGLESTIVN 182 I P+ SAN SG+ T ++ + + E+ +II+GG K + ST+V+ Sbjct: 137 IATRIIKETGPITATSANVSGRNPPTCIEEVEVELKLKVELGIIINGGKCKYSMPSTVVD 196 Query: 183 VQCE-------KKVRILRPGG 196 + +++I R G Sbjct: 197 MSKAGATANEKGEIKIKRKGA 217 >gi|126172293|ref|YP_001048442.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica OS155] gi|152998587|ref|YP_001364268.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica OS185] gi|217971252|ref|YP_002356003.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica OS223] gi|212288219|sp|A3CYL0|RIMN_SHEB5 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|212288220|sp|A6WHB6|RIMN_SHEB8 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|125995498|gb|ABN59573.1| translation factor SUA5 [Shewanella baltica OS155] gi|151363205|gb|ABS06205.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica OS185] gi|217496387|gb|ACK44580.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica OS223] Length = 188 Score = 169 bits (429), Expect = 6e-40, Method: Composition-based stats. Identities = 50/178 (28%), Positives = 77/178 (43%), Gaps = 7/178 (3%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 + + G IA PTE VYGL D N TAI++L +K+RP LI SD + + Sbjct: 11 DIILQGGVIAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWQKGLILVASDFQQLLAYVDE 70 Query: 77 DPL-SLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYG 132 L + L F WPGP T V+ + + + + RV + L Sbjct: 71 SQLTAEQLEFAFSKWPGPFTFVMPIKAH--VSKYLCGEFDSIAVRVSAHAGVQALCRALN 128 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 PL SAN +G+ IL + +I ++ G + + STI++ + K +R Sbjct: 129 KPLVSTSANLAGEDPALTAAEIL-ADFTGKIDALVLGELGEQRQPSTIIDARSGKILR 185 >gi|148826193|ref|YP_001290946.1| hypothetical protein CGSHiEE_06050 [Haemophilus influenzae PittEE] gi|229846228|ref|ZP_04466340.1| hypothetical protein CGSHi7P49H1_05268 [Haemophilus influenzae 7P49H1] gi|148716353|gb|ABQ98563.1| hypothetical protein CGSHiEE_06050 [Haemophilus influenzae PittEE] gi|229811232|gb|EEP46949.1| hypothetical protein CGSHi7P49H1_05268 [Haemophilus influenzae 7P49H1] Length = 207 Score = 169 bits (429), Expect = 6e-40, Method: Composition-based stats. Identities = 53/190 (27%), Positives = 82/190 (43%), Gaps = 7/190 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E L G I PT++ Y L + A+ R+ I+K P + SD+S + Sbjct: 17 INQAVEILQKGGVIVYPTDSGYALGCMMGDKHAMDRIVAIRKLPEGHNFTLVCSDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 +A V+ + L K PG T +L L T+ KT RVP L+ Sbjct: 77 TYARVNNTAYRLIKNNTPGRYTFILTATKELP-RRLMTSKRKTIGLRVPDNKIALDLLSA 135 Query: 131 YGHPLAIPSANRSGQISIT-NVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKK 188 G P+ S G+ T + + + ++ LII GG +G E +T+V++ E Sbjct: 136 LGEPILSCSLMLPGEEHTTQSDPEEIRDRLEHQVDLIIHGGY--LGQEPTTVVDLTEESP 193 Query: 189 VRILRPGGLE 198 V ILR G Sbjct: 194 V-ILREGSGS 202 >gi|327474247|gb|EGF19654.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK408] Length = 196 Score = 169 bits (428), Expect = 6e-40, Method: Composition-based stats. Identities = 64/193 (33%), Positives = 102/193 (52%), Gaps = 8/193 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + K + L AG + +PTETVYGL + N A+ R+YE+K+RP L +V+ + + Sbjct: 1 MDKIEKTLAAGGAVVLPTETVYGLFAQALNQEAVERVYELKRRPRDKALNLNVASLEEIY 60 Query: 72 KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129 + P L L + F PGPLT++L + + + ++T FR+P T LI Sbjct: 61 AFSKNQPSYLEQLYQAFLPGPLTIILQ--ANDRVPVWINSGMETVGFRIPKHPVTLDLIR 118 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 YG PL PSAN SG+ S T+ + I+ + + D ++ G +STI+++ EK + Sbjct: 119 KYG-PLIGPSANLSGKASGTSFQQIMMDFQEEVSGVEEDAALT--GKDSTILDLSGEKAL 175 Query: 190 RILRPGGLEIETL 202 ILR G + E + Sbjct: 176 -ILRQGAITREDI 187 >gi|183603629|ref|ZP_02716060.2| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae CDC0288-04] gi|183573819|gb|EDT94347.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae CDC0288-04] Length = 200 Score = 169 bits (428), Expect = 6e-40, Method: Composition-based stats. Identities = 61/197 (30%), Positives = 102/197 (51%), Gaps = 8/197 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + L+ G + +PTETVYGL + + A+ +Y++K+RP L +++ + Sbjct: 2 MDRIRQELENGGAVILPTETVYGLFSKALDEKAVDHVYQLKRRPRDKALNLNIASFEDIL 61 Query: 72 KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P L L + F PGPLT++L+ + + ++L T FR+P T LI Sbjct: 62 HFSKNQPAYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIR 119 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL PSAN SGQ S + IL + + L D ++ G +STIV++ +K V Sbjct: 120 ETG-PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGDK-V 175 Query: 190 RILRPGGLEIETLKRAI 206 +ILR G ++ E + + Sbjct: 176 KILRQGAIKREDILARL 192 >gi|116516461|ref|YP_816386.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae D39] gi|225858813|ref|YP_002740323.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae 70585] gi|116077037|gb|ABJ54757.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae D39] gi|225721912|gb|ACO17766.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae 70585] Length = 200 Score = 169 bits (428), Expect = 6e-40, Method: Composition-based stats. Identities = 61/197 (30%), Positives = 102/197 (51%), Gaps = 8/197 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + L+ G + +PTETVYGL + + A+ +Y++K+RP L +++ + Sbjct: 2 MDRIRQELEKGGAVVLPTETVYGLFSKALDEKAVDHVYQLKRRPRDKALNLNIASFEDIL 61 Query: 72 KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P L L + F PGPLT++L+ + + ++L T FR+P T LI Sbjct: 62 HFSKNQPAYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIR 119 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL PSAN SGQ S + IL + + L D ++ G +STIV++ +K V Sbjct: 120 ETG-PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGDK-V 175 Query: 190 RILRPGGLEIETLKRAI 206 +ILR G ++ E + + Sbjct: 176 KILRQGAIKREDILARL 192 >gi|291326241|ref|ZP_06123711.2| Sua5/YciO/YrdC/YwlC family protein [Providencia rettgeri DSM 1131] gi|291315158|gb|EFE55611.1| Sua5/YciO/YrdC/YwlC family protein [Providencia rettgeri DSM 1131] Length = 220 Score = 169 bits (428), Expect = 6e-40, Method: Composition-based stats. Identities = 44/183 (24%), Positives = 75/183 (40%), Gaps = 5/183 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + ++ E L+ G I PT++ Y + A++R+ I++ A + D+S Sbjct: 28 ARLISQSVEILNKGGVIVYPTDSGYAIGCRLEEKDALQRICRIRQLDANHNFTLMCRDLS 87 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD L K PG T +L L KT RVP + L Sbjct: 88 ELSNYAHVDNTVFRLIKNNTPGNYTFILRATKEVP-RRLMNEKRKTIGLRVPSNPIARDL 146 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL-ESTIVNVQCE 186 +E G PL S G + + + K++ L+I GG IG +T+++ + Sbjct: 147 LEAVGEPLMSTSLIMPGDDFTQSDPEEIRDLLDKQVDLVIHGGY--IGQKPTTVIDFTDD 204 Query: 187 KKV 189 V Sbjct: 205 TPV 207 >gi|195429998|ref|XP_002063044.1| GK21591 [Drosophila willistoni] gi|194159129|gb|EDW74030.1| GK21591 [Drosophila willistoni] Length = 222 Score = 169 bits (428), Expect = 6e-40, Method: Composition-based stats. Identities = 71/222 (31%), Positives = 109/222 (49%), Gaps = 13/222 (5%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 + S+ + AL A + L AG IA+PT+TVYGLA D+ N AI+RLYEIK R P+ Sbjct: 6 VCSVDEERALDLARQCLLAGQIIALPTDTVYGLACDANNEQAIQRLYEIKGRDEHKPVAI 65 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC- 121 V +I ++++ D L L PGPLT+V++ +PL + R+P Sbjct: 66 CVHNIKALRRYGQADHLGDELLTRLLPGPLTIVIERAPALS-NPLLNPSTSKIGIRIPDF 124 Query: 122 GFTKKLIETYG-HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI----SKIGL 176 F +KL + PLA+ SANRS + S V+ + ++ I D G + L Sbjct: 125 QFIRKLCGVWHEQPLALTSANRSSEPSSLQVEE--FRCLWPQLGGIFDAGPIGLTEERRL 182 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETS 218 ST++++ I+R G ET ++ + EY + E Sbjct: 183 ASTVIDLAKPGSYTIVRAGVALKET-RKVLE---EYGLKENK 220 >gi|213691485|ref|YP_002322071.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213522946|gb|ACJ51693.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 233 Score = 169 bits (428), Expect = 6e-40, Method: Composition-based stats. Identities = 59/210 (28%), Positives = 97/210 (46%), Gaps = 8/210 (3%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 + +TD + L +A + G + IPT+TVYG+A D RN AI R+Y +K+RP L Sbjct: 17 TLKVTDES-LAQAARVIRDGGLVVIPTDTVYGVACDPRNKAAIDRIYRLKRRPRYKALQV 75 Query: 63 HVSDISMVKKHASVDPLSL-HLAKLFWPG---PLTLVLDLLSTTDIHPLSTANLKTACFR 118 ++ + + + P L L+ F PG P+ + + + + T R Sbjct: 76 LLASTDQLDELSLDLPSPLNRLSAAFLPGAFSPIAVARPDCTLETLADTADGRPGTQGIR 135 Query: 119 VPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 +P I PLA SANRSG S V+ + + E+ L +DGG ++ + S Sbjct: 136 IPNSALCLAILKATGPLAASSANRSGDESAQTVQEAV-DAFGSEVDLYLDGGPTQGHVSS 194 Query: 179 TIVNVQ--CEKKVRILRPGGLEIETLKRAI 206 T+V + ILR G + +++A+ Sbjct: 195 TVVKADPYARDGIEILREGVIAQNVIRKAL 224 >gi|319424446|gb|ADV52520.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella putrefaciens 200] Length = 188 Score = 169 bits (428), Expect = 7e-40, Method: Composition-based stats. Identities = 50/178 (28%), Positives = 77/178 (43%), Gaps = 7/178 (3%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 + + G IA PTE VYGL D N TAI++L +K+RP LI SD + + Sbjct: 11 DIVLNGGVIAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWQKGLILVASDFQQLLAYVDE 70 Query: 77 DPL-SLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYG 132 L + L F WPGP T V+ + + + + RV + L Sbjct: 71 SQLTAEQLEFAFSKWPGPFTFVMPIKA--QVSKYLCGEFDSIAVRVSAHAGVQALCRALN 128 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 PL SAN +G+ IL + +I ++ G + + STI++ + K +R Sbjct: 129 KPLVSTSANLAGEDPALTAAEIL-ADFTGKIDALVLGELGEQHQPSTIIDARSGKILR 185 >gi|225708092|gb|ACO09892.1| Hypothetical protein ywlC [Osmerus mordax] Length = 268 Score = 169 bits (428), Expect = 7e-40, Method: Composition-based stats. Identities = 61/191 (31%), Positives = 94/191 (49%), Gaps = 8/191 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + L + L G +A+PT+T+YGLA ++N AI+R+YEIK R PL V +I Sbjct: 61 AEILDATVQSLKEGQVVALPTDTIYGLACLAQNSDAIKRVYEIKGRNGQKPLAICVGEIQ 120 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + K+ V + L K PGP+TLVL +T ++ R+P F ++L Sbjct: 121 DIYKYCKVS-VKEELLKELLPGPVTLVLQR--STVLNTDLNPFTPLVGVRIPNHPFMRRL 177 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI--SKIGLESTIVNVQC 185 + PLA+ SAN S S V + + +++DGG L ST++++ Sbjct: 178 CQLCAEPLALTSANISTHSSTVAVHE--FQDLWPRLAVVVDGGPIGDHSRLGSTVIDLSV 235 Query: 186 EKKVRILRPGG 196 K RI+RPG Sbjct: 236 FGKYRIIRPGC 246 >gi|110669557|ref|YP_659368.1| DNA binding protein; translation factor [Haloquadratum walsbyi DSM 16790] gi|109627304|emb|CAJ53794.1| probable DNA binding protein; probable translation factor [Haloquadratum walsbyi DSM 16790] Length = 235 Score = 169 bits (428), Expect = 7e-40, Method: Composition-based stats. Identities = 61/203 (30%), Positives = 104/203 (51%), Gaps = 10/203 (4%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 DS+ L A + +G + PTETVYGL VD+ NP AI+R+++ K R NPL V Sbjct: 30 IDSDVLSAAVRAIKSGELVVYPTETVYGLGVDALNPDAIKRVFDTKGRTYDNPLSLAVES 89 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125 +S V +H + ++ K F PGP+T++++ +T + + TA R+P Sbjct: 90 VSAVARHTNPSERAMQFIKAFLPGPVTVIVEC--STAVPDILTAGRDRVGIRIPDHHVAL 147 Query: 126 KLIETYG-HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 L+E P+ SAN+SG SI + +L+ SI + + ++++ G + G EST+V+ Sbjct: 148 SLLERAAPTPITATSANQSGTGSIVDTN-MLAQSIQQNVAVVLEAGET-TGTESTVVDPT 205 Query: 185 CEKKVRILRPGGLEIETLKRAIS 207 ++ G + + +S Sbjct: 206 RN----VIHRRGAMADAVMAWLS 224 >gi|256830242|ref|YP_003158970.1| Sua5/YciO/YrdC/YwlC family protein [Desulfomicrobium baculatum DSM 4028] gi|256579418|gb|ACU90554.1| Sua5/YciO/YrdC/YwlC family protein [Desulfomicrobium baculatum DSM 4028] Length = 204 Score = 169 bits (428), Expect = 7e-40, Method: Composition-based stats. Identities = 61/200 (30%), Positives = 98/200 (49%), Gaps = 7/200 (3%) Query: 10 NALRKACEFLD--AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 +A+R+A E L+ G + PTET Y L + +A+ R++ +K RP PL +SD Sbjct: 2 SAVREA-EVLEFARGRLVIYPTETFYALGCLATMHSAVERIFSVKGRPEGKPLPLIISDW 60 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGFTKK 126 M ++ + LA+ FWPGPL++V+++ + PL+ + R+ P + Sbjct: 61 QMAERFLRLTSAQEKLARKFWPGPLSIVVEV--DQRVSPLAQDRGGRSAVRMSPHPIAAR 118 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSI-CKEIPLIIDGGISKIGLESTIVNVQC 185 L G PL SANRSG+ ++ + + E +I D GL ST+V + Sbjct: 119 LCREAGAPLVSSSANRSGRPPACRLEELDPELVRLSEALVITDSPWPGGGLPSTLVEIVG 178 Query: 186 EKKVRILRPGGLEIETLKRA 205 VRILR G + +E + A Sbjct: 179 ANSVRILRAGAIPMEEISAA 198 >gi|139949035|ref|NP_001077336.1| yrdC domain-containing protein, mitochondrial [Danio rerio] gi|134025291|gb|AAI34956.1| Zgc:162301 protein [Danio rerio] Length = 235 Score = 169 bits (428), Expect = 7e-40, Method: Composition-based stats. Identities = 63/191 (32%), Positives = 98/191 (51%), Gaps = 8/191 (4%) Query: 16 CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75 L AG +A+PT+T+YGLA ++N AIRR+Y+IK R PL V +I + K+ Sbjct: 35 VNALKAGQVVAVPTDTIYGLACVAQNSEAIRRVYDIKGRNGDKPLAICVGEIHDIYKYCK 94 Query: 76 VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134 V + L + PGP+TLVL+ +T ++ K R+P F ++L + P Sbjct: 95 VS-VKDRLLRDLLPGPVTLVLERSAT--LNGDLNPFTKLIGVRIPDHPFMRRLCQMCDTP 151 Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI--SKIGLESTIVNVQCEKKVRIL 192 LA+ SAN S Q S + + +++DGG K L ST+V++ + RI+ Sbjct: 152 LALTSANVSTQSSTVAANE--FEDLWPRLAVVVDGGPIEDKSRLGSTVVDLSVCGRYRII 209 Query: 193 RPGGLEIETLK 203 RPG T++ Sbjct: 210 RPGCALSATVQ 220 >gi|15672582|ref|NP_266756.1| hypothetical protein L189883 [Lactococcus lactis subsp. lactis Il1403] gi|12723495|gb|AAK04698.1|AE006293_4 conserved hypothetical protein [Lactococcus lactis subsp. lactis Il1403] Length = 270 Score = 169 bits (428), Expect = 7e-40, Method: Composition-based stats. Identities = 61/196 (31%), Positives = 101/196 (51%), Gaps = 8/196 (4%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 +A + L +G +PTETVYGL D+ N A+++LY +K RP L ++S + K Sbjct: 74 ARAIKALKSGQLAILPTETVYGLFADAMNEEAVQKLYSVKGRPTERALNMNISSFEDILK 133 Query: 73 HASVDPLSLHLA-KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIET 130 ++ P+ L + F PGPLT++L+ ++ D+ T FR+P T+K+I+ Sbjct: 134 YSINQPVYLQKIVEAFLPGPLTIILE--ASKDVPEWIHIGKSTVGFRMPNIAVTQKIIKE 191 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G L PSAN SG S + + + + D S GL++TI+++ EK + Sbjct: 192 VGV-LVGPSANLSGSKSPSFFADLSPEILENAAVAVQDD--SIYGLDTTIIDLTQEKP-K 247 Query: 191 ILRPGGLEIETLKRAI 206 +LR G + E L + + Sbjct: 248 LLRQGAVTKEELLKKV 263 >gi|326487440|dbj|BAJ89704.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 274 Score = 169 bits (428), Expect = 7e-40, Method: Composition-based stats. Identities = 65/203 (32%), Positives = 97/203 (47%), Gaps = 4/203 (1%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M + + + KA + ++ G IA+PT+T+YG A D+ + A+ R+YEIK R PL Sbjct: 61 MDHILPASQDHVVKAIDAINGGQVIAVPTDTIYGFACDACSAEAVNRIYEIKGRIHTRPL 120 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 V+D+ + + A VD L L PGP+T+VL + + L + RVP Sbjct: 121 AICVADVPEISRFAMVDHLPHGLLHNLLPGPVTVVLKRGENSILERSLNPGLDSIGVRVP 180 Query: 121 C-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-S 178 F + + G LA+ SAN SG+ S VK + + DGG+ G S Sbjct: 181 KLDFIRSIARGAGSALALTSANLSGRPSSVGVKD--FGDLWPHCSYVFDGGMLPSGRAGS 238 Query: 179 TIVNVQCEKKVRILRPGGLEIET 201 TIV++ +ILR G ET Sbjct: 239 TIVDLITPGVYKILRDGSSREET 261 >gi|54297353|ref|YP_123722.1| hypothetical protein lpp1398 [Legionella pneumophila str. Paris] gi|53751138|emb|CAH12549.1| hypothetical protein lpp1398 [Legionella pneumophila str. Paris] Length = 206 Score = 169 bits (428), Expect = 7e-40, Method: Composition-based stats. Identities = 50/197 (25%), Positives = 87/197 (44%), Gaps = 6/197 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + LRKA ++ G I PT++ Y L N +A+ R+ +++ + + D+S Sbjct: 14 ARLLRKAVSIIEEGGLIVYPTDSGYALGCSLGNKSALERIRRLRQLDKHHNMTLVCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCG-FTKK 126 + +A V L K F PG T +L+ +T ++ L +T RVP T Sbjct: 74 QLGTYAKVSNPIFRLLKAFTPGSYTFILN--ATHEVPRLMLHPKRRTLGLRVPDNTITLS 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+E PL + G + + + + +I LIIDGG +T+V++ + Sbjct: 132 LLECLEAPLMSTTLILPGAQAPLSEPEAIKDLLGNQIDLIIDGGNCGH-EPTTVVDLTGD 190 Query: 187 KKVRILRPGGLEIETLK 203 + I+R G + E K Sbjct: 191 YPI-IIREGKGDPEPFK 206 >gi|152997398|ref|YP_001342233.1| Sua5/YciO/YrdC/YwlC family protein [Marinomonas sp. MWYL1] gi|150838322|gb|ABR72298.1| Sua5/YciO/YrdC/YwlC family protein [Marinomonas sp. MWYL1] Length = 210 Score = 169 bits (428), Expect = 7e-40, Method: Composition-based stats. Identities = 47/200 (23%), Positives = 79/200 (39%), Gaps = 8/200 (4%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 Q I N +++A E + G IA PT+ Y L + A+ R+ I++ Sbjct: 7 QFFQIHPENPQARLVKQAAEVIRNGGVIAYPTDCGYSLGCHLGDKDALDRIRAIRRLDDK 66 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 + D+S + +A D L K PGP T + S L KT Sbjct: 67 HNFTLVCRDLSEISTYARFDNRLYRLLKNNTPGPYTFIFSATSEVP-RRLLHPKRKTIGI 125 Query: 118 RVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 RVP L+E G P+ S G+ + + ++ + L+IDGG + Sbjct: 126 RVPNNNIVSALLEELGEPIMSSSLILPGETDPMTDPYDIRDTLEHALDLVIDGGFCGL-Q 184 Query: 177 ESTIVNVQCEKKVRILRPGG 196 +T+V + + + ++R G Sbjct: 185 PTTVVKMDAD-SIEVVRVGA 203 >gi|113968380|ref|YP_732173.1| translation factor SUA5 [Shewanella sp. MR-4] gi|114045545|ref|YP_736095.1| translation factor SUA5 [Shewanella sp. MR-7] gi|122945098|sp|Q0I0R7|RIMN_SHESR RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|123325544|sp|Q0HPA1|RIMN_SHESM RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|113883064|gb|ABI37116.1| translation factor SUA5 [Shewanella sp. MR-4] gi|113886987|gb|ABI41038.1| translation factor SUA5 [Shewanella sp. MR-7] Length = 188 Score = 169 bits (428), Expect = 7e-40, Method: Composition-based stats. Identities = 51/181 (28%), Positives = 82/181 (45%), Gaps = 7/181 (3%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 + + + G IA PTE VYGL D N TAI++L +K+RP LI S+ S + + Sbjct: 8 EIKDIVLNGGVIAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWQKGLILVASEFSQLVDY 67 Query: 74 ASVDPL-SLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 L + L F WPGP T V+ + + + RV + L + Sbjct: 68 VDESQLSAEQLEFAFSKWPGPFTFVMPIKPH--VSRYLCGEFDSIAVRVSAHEGVRALCQ 125 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL SAN +G+ + IL++ +I ++ G + + STI++ + K + Sbjct: 126 ALGKPLVSTSANLAGEDPALSGDEILNA-FEGKIDALVLGSLGEQRQPSTIIDARSGKIL 184 Query: 190 R 190 R Sbjct: 185 R 185 >gi|319955258|ref|YP_004166525.1| translation factor sua5 [Cellulophaga algicola DSM 14237] gi|319423918|gb|ADV51027.1| translation factor SUA5 [Cellulophaga algicola DSM 14237] Length = 206 Score = 169 bits (428), Expect = 7e-40, Method: Composition-based stats. Identities = 46/197 (23%), Positives = 82/197 (41%), Gaps = 9/197 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL-ICHVSD 66 + ++K L G I PT+TVYGL D N A+ ++ IK +D Sbjct: 13 NPKEIKKVINVLKKGGLIIYPTDTVYGLGCDITNTKALEKIARIKGIKLDKANWSFICAD 72 Query: 67 ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 +S + + +D + + K PGP T +L + P KT RVP Sbjct: 73 LSNLSDYVRQIDTPTFKILKRALPGPYTFILPGNNNL---PKEFKKKKTVGIRVPDNSIA 129 Query: 125 KKLIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 K ++E G+P+ S ++ T ++ + ++IDGG ST++++ Sbjct: 130 KAIVEALGNPIVSTSIRDEDEVLEYTTDPELIFEKWQNLVDIVIDGGYGD-NKASTVIDL 188 Query: 184 QCEKKVRILRPGGLEIE 200 + + ++R G I+ Sbjct: 189 SEGEPI-VIREGKGPID 204 >gi|157370905|ref|YP_001478894.1| hypothetical protein Spro_2665 [Serratia proteamaculans 568] gi|157322669|gb|ABV41766.1| Sua5/YciO/YrdC/YwlC family protein [Serratia proteamaculans 568] Length = 206 Score = 169 bits (428), Expect = 7e-40, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 74/189 (39%), Gaps = 4/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A + L G I PT++ Y L +A+ R+ I++ + D+S Sbjct: 14 PRLINQAVDVLRKGGVIVYPTDSGYALGCKLEEKSAMERICRIRQLDGNHNFTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD + L K PG T +L L KT RVP L Sbjct: 74 ELSTYAYVDNTAFRLIKNNTPGNYTFILKATKEVP-RRLMNDKRKTIGLRVPSNPIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E P+ + G + +S + K++ L+I GG +T++++ E Sbjct: 133 LEVLNEPMMSTTLMLPGNDFAESDPEEISDHLGKQVDLVIHGGFLGQ-QPTTVIDLT-ES 190 Query: 188 KVRILRPGG 196 ++R G Sbjct: 191 APEVVREGA 199 >gi|241758536|ref|ZP_04756654.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria flavescens SK114] gi|241321309|gb|EER57463.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria flavescens SK114] Length = 206 Score = 169 bits (428), Expect = 7e-40, Method: Composition-based stats. Identities = 40/189 (21%), Positives = 75/189 (39%), Gaps = 5/189 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A + + G I PT++ Y L + A+ R+ I+K + L +D+S + Sbjct: 17 IKQAADIVRGGGVIVYPTDSCYALGCKLGDKNAMERILTIRKIDQKHHLTLMCADLSELG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIET 130 +A VD K PG T +L L KT RVP L++ Sbjct: 77 TYAKVDNAQFRQLKAATPGSYTFILQATKEVPNRTL-HPKRKTIGLRVPDNATALALLQE 135 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G P+ + + + + + L+IDGG +T++++ ++ Sbjct: 136 LGEPILSCTLMLPEDDEPLTDPYEIRDRLEHAVDLVIDGGWCGT-EPTTVIDMTDGTEL- 193 Query: 191 ILRPGGLEI 199 +R G +I Sbjct: 194 -IRQGKGDI 201 >gi|239621650|ref|ZP_04664681.1| conserved protein in the Sua5/YciO/YrdC family protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|296454708|ref|YP_003661851.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium longum subsp. longum JDM301] gi|317482071|ref|ZP_07941095.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium sp. 12_1_47BFAA] gi|239515525|gb|EEQ55392.1| conserved protein in the Sua5/YciO/YrdC family protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|296184139|gb|ADH01021.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium longum subsp. longum JDM301] gi|316916430|gb|EFV37828.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium sp. 12_1_47BFAA] Length = 233 Score = 169 bits (428), Expect = 7e-40, Method: Composition-based stats. Identities = 59/210 (28%), Positives = 96/210 (45%), Gaps = 8/210 (3%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 + +TD + L +A + G + IPT+TVYG+A D RN AI R+Y +K+RP L Sbjct: 17 TLKVTDES-LAQAARVIRDGGLVVIPTDTVYGVACDPRNKAAIDRIYRLKRRPRYKALQV 75 Query: 63 HVSDISMVKKHASVDPLSL-HLAKLFWPG---PLTLVLDLLSTTDIHPLSTANLKTACFR 118 ++ + + P L L+ F PG P+ + + + + T R Sbjct: 76 LLASTDQLDELGLDLPSPLNRLSAAFLPGAFSPIAVARPDCTLETLADTADGRPGTQGIR 135 Query: 119 VPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 +P I PLA SANRSG S V+ + + E+ L +DGG ++ + S Sbjct: 136 IPNSALCLAILKATGPLAASSANRSGDESAQTVQEAV-DAFGSEVDLYLDGGPTQGHVSS 194 Query: 179 TIVNVQ--CEKKVRILRPGGLEIETLKRAI 206 T+V + ILR G + +++A+ Sbjct: 195 TVVKADPYARDGIEILREGVIAQNVIRKAL 224 >gi|326521554|dbj|BAK00353.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 214 Score = 169 bits (428), Expect = 7e-40, Method: Composition-based stats. Identities = 65/203 (32%), Positives = 97/203 (47%), Gaps = 4/203 (1%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M + + + KA + ++ G IA+PT+T+YG A D+ + A+ R+YEIK R PL Sbjct: 1 MDHILPASQDHVVKAIDAINGGQVIAVPTDTIYGFACDACSAEAVNRIYEIKGRIHTRPL 60 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 V+D+ + + A VD L L PGP+T+VL + + L + RVP Sbjct: 61 AICVADVPEISRFAMVDHLPHGLLHNLLPGPVTVVLKRGENSILERSLNPGLDSIGVRVP 120 Query: 121 C-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-S 178 F + + G LA+ SAN SG+ S VK + + DGG+ G S Sbjct: 121 KLDFIRSIARGAGSALALTSANLSGRPSSVGVKD--FGDLWPHCSYVFDGGMLPSGRAGS 178 Query: 179 TIVNVQCEKKVRILRPGGLEIET 201 TIV++ +ILR G ET Sbjct: 179 TIVDLITPGVYKILRDGSSREET 201 >gi|251792412|ref|YP_003007138.1| Sua5/YciO/YrdC/YwlC family protein [Aggregatibacter aphrophilus NJ8700] gi|247533805|gb|ACS97051.1| Sua5/YciO/YrdC/YwlC family protein [Aggregatibacter aphrophilus NJ8700] Length = 207 Score = 169 bits (428), Expect = 7e-40, Method: Composition-based stats. Identities = 49/192 (25%), Positives = 79/192 (41%), Gaps = 5/192 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A E L G I PT++ Y L + A+ R+ +I++ P + SD+S Sbjct: 14 ARLINQAVEILRKGGVIVYPTDSGYALGCMIGDKHAMDRIVQIRQLPEGHNFTLVCSDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + ++ V L K PG T +L L T+ KT RVP L Sbjct: 74 ELSNYSLVPNSVYRLIKNNTPGRYTFILTATKELP-RRLMTSKRKTIGIRVPDNQIALDL 132 Query: 128 IETYGHPLAIPSANRSGQISIT-NVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 ++ G P+ S + IT + + + +++ LII GG +G E T V + Sbjct: 133 LKALGEPILSCSLMLPNEEHITQSDPEEIRDRLERQVDLIIHGGY--LGQEPTTVVDLTD 190 Query: 187 KKVRILRPGGLE 198 ILR G Sbjct: 191 STPIILREGSGS 202 >gi|319639149|ref|ZP_07993903.1| hypothetical protein HMPREF0604_01527 [Neisseria mucosa C102] gi|317399588|gb|EFV80255.1| hypothetical protein HMPREF0604_01527 [Neisseria mucosa C102] Length = 206 Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats. Identities = 41/189 (21%), Positives = 77/189 (40%), Gaps = 5/189 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A + + +G I PT++ Y L + TA+ R+ I+K + L +D+S + Sbjct: 17 IKQAADIVRSGGVIVYPTDSCYALGCKLGDKTAMERILTIRKIDQKHHLTLMCADLSELG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIET 130 +A VD K PG T +L L KT RVP L++ Sbjct: 77 TYAKVDNAQFRQLKAATPGSYTFILQATKEVPNRTL-HPKRKTIGLRVPDNATALALLQE 135 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G P+ + + + + + L+IDGG +T++++ ++ Sbjct: 136 LGEPILSCTLMLPEDEEPLTDPYEIRDRLEHAVDLVIDGGWCGT-EPTTVIDMTDGTEL- 193 Query: 191 ILRPGGLEI 199 +R G +I Sbjct: 194 -IRQGKGDI 201 >gi|55820818|ref|YP_139260.1| Sua5/YciO/YrdC family protein [Streptococcus thermophilus LMG 18311] gi|55736803|gb|AAV60445.1| hypothetical protein, Sua5/YciO/YrdC family protein [Streptococcus thermophilus LMG 18311] Length = 201 Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats. Identities = 58/196 (29%), Positives = 100/196 (51%), Gaps = 8/196 (4%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 ++ E L+ G + +PTETVYGL + + A+ +YE+K RP + +V+ + Sbjct: 6 KQLREILNNGEAVVLPTETVYGLFAKALDEKAVDYVYELKNRPRDKAMNLNVASYEDILF 65 Query: 73 HASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 ++ P L L F PGPLT++L + + + L T FR+P T++LI+ Sbjct: 66 YSKEQPKYLKQLYDAFLPGPLTIIL--KANDQVPRWINSGLATVGFRLPNHPVTRELIQA 123 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G PL PSAN+SG+ S + + + ++ D + +G++STI+++ R Sbjct: 124 EG-PLIGPSANKSGKESGRHFDD-IRAQFDFQVTGYQDDN-ALLGVDSTILDLSVS-PAR 179 Query: 191 ILRPGGLEIETLKRAI 206 ILR G + + L A+ Sbjct: 180 ILRQGKITKDDLLAAL 195 >gi|27366331|ref|NP_761859.1| YciO family [Vibrio vulnificus CMCP6] gi|37679408|ref|NP_934017.1| putative translation factor [Vibrio vulnificus YJ016] gi|320156839|ref|YP_004189218.1| YciO family [Vibrio vulnificus MO6-24/O] gi|27362532|gb|AAO11386.1| YciO family [Vibrio vulnificus CMCP6] gi|37198151|dbj|BAC93988.1| putative translation factor [Vibrio vulnificus YJ016] gi|319932151|gb|ADV87015.1| YciO family [Vibrio vulnificus MO6-24/O] Length = 206 Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats. Identities = 39/182 (21%), Positives = 70/182 (38%), Gaps = 3/182 (1%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A + G + PT++ Y L N A+ R+ +I++ + D+S Sbjct: 14 ARLINQAVAIIRNGGVVVYPTDSGYALGCQLENKQALDRICQIRRLDEKHNFTLLCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD + L K PGP T + L A KT RVP L Sbjct: 74 ELSIYARVDNTAFRLLKNNTPGPYTFIFKGTKEVP-RRLMNAKRKTIGIRVPDNRIALDL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ G PL S G+ + + + +I++GG +T+++ Sbjct: 133 LDALGEPLMSTSLILPGKEVTEADPEEIRDKLEHAVDVILNGGYLGE-QPTTVIDFSEGD 191 Query: 188 KV 189 V Sbjct: 192 AV 193 >gi|88802782|ref|ZP_01118309.1| putative Sua5/yciO/yrdC family protein [Polaribacter irgensii 23-P] gi|88781640|gb|EAR12818.1| putative Sua5/yciO/yrdC family protein [Polaribacter irgensii 23-P] Length = 205 Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats. Identities = 42/199 (21%), Positives = 82/199 (41%), Gaps = 10/199 (5%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP-LICHVSD 66 + + K + L AG + PT+TVYGL D A+ ++ ++K +D Sbjct: 13 NPKEITKIVKVLQAGGLVIYPTDTVYGLGCDITKVKALEKIAQLKGVKLDKANFSFICND 72 Query: 67 ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124 +S + + +D + + K PGP T +L + P KT R+P Sbjct: 73 LSHLSDYVKQIDSTTFKILKRALPGPYTFILPGSTNL---PKVFKKKKTVGIRIPDNNII 129 Query: 125 KKLIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + L+ G+P+ S + T ++ + ++IDGG ST++++ Sbjct: 130 RMLVAELGNPIVSTSIRDEDDVLEYTTDPELIFEKWQNSVDVVIDGGYGD-NEPSTVIDL 188 Query: 184 QCEKKVRILRPGGLEIETL 202 + +++R G ++ L Sbjct: 189 T--EAPKVIREGKGSLDIL 205 >gi|332876662|ref|ZP_08444421.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332685367|gb|EGJ58205.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 202 Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats. Identities = 52/195 (26%), Positives = 85/195 (43%), Gaps = 8/195 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSD 66 + + KA + L G I PT+TVY + D+ N A+ R+ +K P + L D Sbjct: 11 NPREMAKALKMLRDGELIIYPTDTVYAIGCDALNVRAVERICALKGVNPQKSNLSIICYD 70 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 +S + ++A V + L K PGP T +L S P N K RVP + Sbjct: 71 LSNISEYAQVSNAAFKLLKKNLPGPFTFILPTSSRL---PKIYKNKKEVGIRVPDNSIAR 127 Query: 126 KLIETYGHPLAIPSANRSGQIS-ITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 L++ G+P+ S + +I + ++ + L+IDGG ST+VN Sbjct: 128 GLVDGLGNPILTMSVHDEDEIIEYSTDPELIHEKYEGRVALVIDGGYGGS-EASTVVNC- 185 Query: 185 CEKKVRILRPGGLEI 199 + ++R G E+ Sbjct: 186 VDDAFEVVRQGKGEL 200 >gi|307130977|ref|YP_003882993.1| putative RNA-binding protein [Dickeya dadantii 3937] gi|306528506|gb|ADM98436.1| predicted RNA-binding protein [Dickeya dadantii 3937] Length = 206 Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats. Identities = 41/188 (21%), Positives = 70/188 (37%), Gaps = 4/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + E L G I PT++ Y L + A+ R+ I+ + D+S Sbjct: 14 PRLINQTVEILHKGGVIVYPTDSGYALGCMLEDKAAMERICRIRDLDQNHNFTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD + L K PG T +L L KT RVP +L Sbjct: 74 ELSSYAYVDNAAFRLMKNNTPGNYTFILKATKEVP-RRLMNEKRKTIGMRVPSNPIALEL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + PL + G + + + K + L+I GG +T++++ Sbjct: 133 LAALNEPLMSTTLMLPGNDFAESDPEEIQEQLGKRVDLVIHGGFLGQ-QPTTVIDLTESV 191 Query: 188 KVRILRPG 195 V ++R G Sbjct: 192 PV-VVREG 198 >gi|91216559|ref|ZP_01253525.1| hypothetical protein P700755_03367 [Psychroflexus torquis ATCC 700755] gi|91185353|gb|EAS71730.1| hypothetical protein P700755_03367 [Psychroflexus torquis ATCC 700755] Length = 189 Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats. Identities = 50/183 (27%), Positives = 81/183 (44%), Gaps = 3/183 (1%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + L G I PT+TV+G+ D+ N AI ++Y +K +P LIC V D M+ Sbjct: 8 ILECIQILKRGGLILYPTDTVWGIGCDATNAEAIDKIYALKNQPNTKSLICLVPDFKMLN 67 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 ++ P + + P T++ I A+ T RV F K+LI Sbjct: 68 QYVEDIPEVAYDILKYADKPTTIIYQNP--IRISTNLIADDDTLGIRVVDDIFAKELIRK 125 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 Y P+ SAN SGQ + N I + ++ +K STI+ + + KV Sbjct: 126 YKRPIVSTSANISGQPTPANFFEISPEILNGVDYVVNLYQSTKNKKPSTIIKLDLDGKVE 185 Query: 191 ILR 193 ++R Sbjct: 186 VIR 188 >gi|253989544|ref|YP_003040900.1| hypothetical protein PAU_02064 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780994|emb|CAQ84156.1| conserved hypothetical protein [Photorhabdus asymbiotica] Length = 206 Score = 168 bits (427), Expect = 8e-40, Method: Composition-based stats. Identities = 41/189 (21%), Positives = 73/189 (38%), Gaps = 3/189 (1%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ + G + PT++ Y + + A+ R+ I++ + D+S Sbjct: 14 PRLIGQSVDVFKNGGVVVYPTDSGYAIGCHLEDKDAMTRICRIRQLDNHHNFTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD + L K PG T +L L KT RVP L Sbjct: 74 EISTYAYVDNSAFRLIKNNTPGNYTFILRATKEVP-RRLMNDKRKTIGLRVPSNPIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL S G + + ++ K + LII GG +T++++ + Sbjct: 133 LEQVGEPLMSTSLILPGNDFAESDPEEIKDNLGKLVDLIIHGGYLGQ-QPTTVIDLTDDT 191 Query: 188 KVRILRPGG 196 V I + G Sbjct: 192 PVVIRKGVG 200 >gi|158521439|ref|YP_001529309.1| Sua5/YciO/YrdC/YwlC family protein [Desulfococcus oleovorans Hxd3] gi|158510265|gb|ABW67232.1| Sua5/YciO/YrdC/YwlC family protein [Desulfococcus oleovorans Hxd3] Length = 225 Score = 168 bits (427), Expect = 8e-40, Method: Composition-based stats. Identities = 61/203 (30%), Positives = 99/203 (48%), Gaps = 6/203 (2%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 DS + +AC L+AG + PT T+YGLA D+ N +A+ ++ +IK RP P++ + D Sbjct: 25 DSALIDRACGLLNAGGVLVFPTVTLYGLAADAWNRSAVEKVRQIKGRPDDKPILILIPDA 84 Query: 68 SMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + + P + L FWPG +TLV + + H +S + T RVP Sbjct: 85 AAAAGLVTTVPAGAEQLMDRFWPGNVTLVFEASARVPSHLISPSG--TIGLRVPSHPVAH 142 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 L+ G P+ SANRSG + V L I + +++D G+ G+ ST+V+V Sbjct: 143 ALVVRLGRPVTGTSANRSGSPACGRVAD-LDVDIVRLADMVLDAGVLGGGVGSTVVDVTM 201 Query: 186 EKKVRILRPGGLEIETLKRAISV 208 ++LR G + + +A Sbjct: 202 N-PPKVLREGTVRAADILKAAGT 223 >gi|307132802|ref|YP_003884818.1| tRNA (ANN) t(6)A37 threonylcarbamoyladenosine biosynthesis protein [Dickeya dadantii 3937] gi|306530331|gb|ADN00262.1| tRNA (ANN) t(6)A37 threonylcarbamoyladenosine biosynthesis protein [Dickeya dadantii 3937] Length = 190 Score = 168 bits (427), Expect = 8e-40, Method: Composition-based stats. Identities = 53/197 (26%), Positives = 82/197 (41%), Gaps = 11/197 (5%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 +MS +S L + L IA PTE V+GL D + TA+ RL +K+RP LI Sbjct: 1 MMSNINSEDLAPLLQQLREENVIAYPTEAVFGLGCDPDSETAVERLLALKQRPREKGLIL 60 Query: 63 HVSDISMVKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 +D ++ + + + WPGP+T VL + T T + RV Sbjct: 61 IAADFQQLEPYVDISALSDIQRQTIFASWPGPVTWVLP--AKTVTPDWLTGRFTSLAVRV 118 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 K+L +G PL SAN SGQ + + + + P +++G + S Sbjct: 119 SDHPLVKQLCLVFGKPLVSTSANLSGQPPCRTAREV-AEQFGEGFP-VLNGEVGGRLNPS 176 Query: 179 TIVNVQCEKKVRILRPG 195 I + +LR G Sbjct: 177 EIRDALTG---EMLRQG 190 >gi|145627820|ref|ZP_01783621.1| putative translation factor, SUA5 [Haemophilus influenzae 22.1-21] gi|144979595|gb|EDJ89254.1| putative translation factor, SUA5 [Haemophilus influenzae 22.1-21] Length = 207 Score = 168 bits (427), Expect = 8e-40, Method: Composition-based stats. Identities = 52/195 (26%), Positives = 85/195 (43%), Gaps = 7/195 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A E L G I PT++ Y L + A+ R+ I+K P + SD+S Sbjct: 14 ARLINQAVEILQKGGVIVYPTDSGYALGCMMGDKHAMDRIVAIRKLPEGHNFTLVCSDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A+V+ ++ L K PG T +L L T+ KT RVP L Sbjct: 74 ELSTYATVNNIAYRLIKNNTPGRYTFILTATKELP-RRLMTSKRKTIGLRVPDNKIALDL 132 Query: 128 IETYGHPLAIPSANRSGQISIT-NVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQC 185 + G P+ S + T + + + ++ LII GG +G E +T+V++ Sbjct: 133 LSALGEPILSCSLMLPNEEHTTQSDPEEIRDRLEHQVDLIIHGGY--LGQEPTTVVDLTE 190 Query: 186 EKKVRILRPGGLEIE 200 E V ILR G + Sbjct: 191 ESPV-ILREGSGSTD 204 >gi|57239024|ref|YP_180160.1| hypothetical protein Erum2950 [Ehrlichia ruminantium str. Welgevonden] gi|58578965|ref|YP_197177.1| hypothetical protein ERWE_CDS_03010 [Ehrlichia ruminantium str. Welgevonden] gi|57161103|emb|CAH58012.1| conserved hypothetical protein [Ehrlichia ruminantium str. Welgevonden] gi|58417591|emb|CAI26795.1| Conserved hypothetical protein (putative translation factor SUA5 family) [Ehrlichia ruminantium str. Welgevonden] Length = 199 Score = 168 bits (427), Expect = 8e-40, Method: Composition-based stats. Identities = 54/197 (27%), Positives = 96/197 (48%), Gaps = 7/197 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + KA E L I PTETVY LA D+ + I+++Y+IK RP P+ +S+I +K Sbjct: 2 ISKAVEALKNKQLICFPTETVYALAGDAYSIEVIQKIYKIKNRPYNKPVSLLLSNIDQIK 61 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 + +++ + ++ + PGP+T +L + + + N R+P ++ Sbjct: 62 QFSNLTEHTAYIIQQLSPGPITFILPIHNYGKLPKQFFYNK--IGIRIPNHPIALAILNN 119 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 + HP+ S N SGQ +V +S +I K I IID G ST++++ + Sbjct: 120 FDHPITATSVNISGQQDAISVDQ-ISDNIKKNISFIIDNNRLVHGTASTVIDLTS---YK 175 Query: 191 ILRPGGLEIETLKRAIS 207 ILR G + + ++ + Sbjct: 176 ILRKGAVTKQKIQEILK 192 >gi|330830520|ref|YP_004393472.1| translation factor YciO [Aeromonas veronii B565] gi|328805656|gb|AEB50855.1| translation factor YciO [Aeromonas veronii B565] Length = 206 Score = 168 bits (427), Expect = 9e-40, Method: Composition-based stats. Identities = 41/189 (21%), Positives = 74/189 (39%), Gaps = 3/189 (1%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A + + G I PT++ Y L + A+ R+ I++ A + D+S Sbjct: 14 ARLIGQAVQIIQNGGVIVYPTDSGYALGCQMGDKGALERICRIRRLDANHDFTLVCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD + L K PG T + L K+ RVP + L Sbjct: 74 EISTYAKVDNSAFRLIKNNTPGAYTFIFKATKEVP-RRLMNEKKKSIGIRVPDNKIAQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL + + + K+I L+++GG +T+V+ ++ Sbjct: 133 LEALGEPLLSTTLILPDSEIAEFDPEEIFDKLGKQIDLVVNGGYLGE-QPTTVVDFSDDE 191 Query: 188 KVRILRPGG 196 V R G Sbjct: 192 PVLRRRGAG 200 >gi|254821300|ref|ZP_05226301.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium intracellulare ATCC 13950] Length = 219 Score = 168 bits (427), Expect = 9e-40, Method: Composition-based stats. Identities = 50/195 (25%), Positives = 82/195 (42%), Gaps = 5/195 (2%) Query: 24 PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL-SLH 82 + +PT+TVYG+ D+ N A+ L K R P+ V ++ P + Sbjct: 29 LVVMPTDTVYGIGADAFNSAAVSVLLSAKGRGRDMPVGVLVGSWHTIEGLVYTMPDGARD 88 Query: 83 LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANR 142 L + FWPG L+LV+ + T R+P + PLA+ SAN Sbjct: 89 LIRAFWPGALSLVVTQAPSLQW--DLGDARGTVMLRMPLHPVAIELLREVGPLAVSSANI 146 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202 SG+ + + + + + ++ G S+ G STIV++ RILR G + E + Sbjct: 147 SGRTAAVDAGEA-RDQLGDLVDVYLEAGPSEQGAASTIVDLTG-PTPRILRLGPVSAERI 204 Query: 203 KRAISVELEYCVDET 217 + V+ E E Sbjct: 205 AEVLGVDPEGLTAEA 219 >gi|294670991|ref|ZP_06735847.1| hypothetical protein NEIELOOT_02697 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307478|gb|EFE48721.1| hypothetical protein NEIELOOT_02697 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 206 Score = 168 bits (427), Expect = 9e-40, Method: Composition-based stats. Identities = 43/189 (22%), Positives = 71/189 (37%), Gaps = 4/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E + G IA PT++ Y L + A+ R+ I++ + L +D+ Sbjct: 14 ERLIKQAAEIVRNGGVIAYPTDSCYALGCRLGDKEAMERILRIRQIDLKHHLTLMCADLG 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD K PG T +L L KT RVP L Sbjct: 74 ELGTYAKVDNSQFRQLKAATPGSYTFILQATKEVPNRTL-HPKRKTIGLRVPDNKIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + + + + + + L+IDGG G+E T V + Sbjct: 133 LNELGEPLLSCTLMLPEDGEPLSDPYEIRDRLEHSVDLVIDGGWC--GMEPTTVVDMTDG 190 Query: 188 KVRILRPGG 196 V + G Sbjct: 191 TVLVREGRG 199 >gi|238919595|ref|YP_002933110.1| hypothetical protein NT01EI_1694 [Edwardsiella ictaluri 93-146] gi|238869164|gb|ACR68875.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 206 Score = 168 bits (427), Expect = 9e-40, Method: Composition-based stats. Identities = 40/196 (20%), Positives = 79/196 (40%), Gaps = 4/196 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++ E L G I PT++ Y L +A+ R+ I++ + + D+S Sbjct: 14 PRLIKQVVEVLHKGGVIVYPTDSGYALGCMLEEKSAMERICRIRRIDSNHNFTLVCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A V+ + L K PG T +L L + KT RVP + L Sbjct: 74 ELSSYAFVNNAAFRLLKNNTPGGYTFILKASKGVP-RRLMSEKRKTIGLRVPSNPIARDL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL S + + + K++ L+I GG +T++++ + Sbjct: 133 LAELGEPLMSTSLMLPESEFTESDPEEIQERLGKQVDLVIHGGYLGQ-QPTTVIDLTEDT 191 Query: 188 KVRILRPGGLEIETLK 203 + ++R G + + + Sbjct: 192 PL-VVRVGAGDPKPFQ 206 >gi|308235422|ref|ZP_07666159.1| Sua5/YciO/YrdC/YwlC family protein [Gardnerella vaginalis ATCC 14018] gi|311114829|ref|YP_003986050.1| Sua5/YciO/YrdC/YwlC family protein [Gardnerella vaginalis ATCC 14019] gi|310946323|gb|ADP39027.1| Sua5/YciO/YrdC/YwlC family protein [Gardnerella vaginalis ATCC 14019] Length = 220 Score = 168 bits (427), Expect = 9e-40, Method: Composition-based stats. Identities = 61/217 (28%), Positives = 103/217 (47%), Gaps = 13/217 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M + + +L+ A + ++AG I +PT+TVYG+A D N A+ ++Y++K+RP L Sbjct: 1 MSKICTINEESLQLAAQIINAGGVIVVPTDTVYGVACDPFNEDAVAKIYQLKRRPRTKAL 60 Query: 61 ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANL------- 112 +S +S ++K P L LA+ F PG + + + L+T Sbjct: 61 QILMSSVSDLEKLGLYLPNPLDVLAEKFLPGGYSPIARAKKDSVATRLATLCKADESSEK 120 Query: 113 --KTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 T RVP I PLA SANRSG S + + +++ EIPL ++ G Sbjct: 121 CEATQGVRVPDCPELMQILRVTGPLAASSANRSGNESADSAEEAVAA-FGYEIPLYLNAG 179 Query: 171 ISKIGLESTIV--NVQCEKKVRILRPGGLEIETLKRA 205 ++ + ST+V + + + ILR G + E ++ Sbjct: 180 PTRSHVASTVVGADASDKDGIVILREGVISEEQIRAE 216 >gi|161528935|ref|YP_001582761.1| Sua5/YciO/YrdC/YwlC family protein [Nitrosopumilus maritimus SCM1] gi|160340236|gb|ABX13323.1| Sua5/YciO/YrdC/YwlC family protein [Nitrosopumilus maritimus SCM1] Length = 198 Score = 168 bits (427), Expect = 9e-40, Method: Composition-based stats. Identities = 56/198 (28%), Positives = 94/198 (47%), Gaps = 5/198 (2%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + KA + ++ G + PT+TVYG+ + + + +++YEIK R P V Sbjct: 6 DKEGIEKASKVIEDGGIVIFPTDTVYGIGCNPYSKESAKKVYEIKSRDFSKPFPVLVYSK 65 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 + + A D +S L + FWPG LT++L L L+ ++ RVP Sbjct: 66 EIASQIAEFDEISEKLVEKFWPGQLTILLKLKDEKLKESLNLSDK--IALRVPNHKCTLS 123 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + H L SAN SGQ S + + + S + + +DGG ESTI+ ++ + Sbjct: 124 LLEKCHYLIGTSANVSGQPSFFDPQECIKSV--ENYDVFVDGGTITSKGESTIIAIE-DG 180 Query: 188 KVRILRPGGLEIETLKRA 205 K++I+R G L E + + Sbjct: 181 KIKIIREGSLSKEEILKV 198 >gi|282600503|ref|ZP_05974542.2| protein RimN [Providencia rustigianii DSM 4541] gi|282564965|gb|EFB70500.1| protein RimN [Providencia rustigianii DSM 4541] Length = 201 Score = 168 bits (427), Expect = 9e-40, Method: Composition-based stats. Identities = 53/194 (27%), Positives = 77/194 (39%), Gaps = 8/194 (4%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 ++ M + A++ L IA PTE V+GL D + TA+ +L E+K+RP L Sbjct: 10 LKTMQNQSTPAIKNIINALQQQQVIAYPTEAVFGLGCDPDSETAVNKLLELKQRPWEKGL 69 Query: 61 ICHVSDISMVKKHASVDPLSLHL---AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 I +K + L+ WPGP+T V+ TT T T Sbjct: 70 ILIADSYEQLKNYVDDSQLTDQQRQTMFATWPGPVTWVVPAKKTT--PKWLTGKFDTLAV 127 Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 RV K+L YG P+ SAN SG ++ IP I+DG + Sbjct: 128 RVTNHELVKELCSQYGKPIVSTSANLSGLEPCRTTGEVV-EQFQDTIP-ILDGEVGGRLN 185 Query: 177 ESTIVNVQCEKKVR 190 S I + + R Sbjct: 186 PSEIRDAMTGQLYR 199 >gi|312971455|ref|ZP_07785630.1| yrdC domain protein [Escherichia coli 1827-70] gi|310336052|gb|EFQ01252.1| yrdC domain protein [Escherichia coli 1827-70] gi|323187498|gb|EFZ72807.1| yrdC domain protein [Escherichia coli RN587/1] Length = 183 Score = 168 bits (427), Expect = 9e-40, Method: Composition-based stats. Identities = 42/178 (23%), Positives = 74/178 (41%), Gaps = 4/178 (2%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 + G I PT++ Y L + A+ R+ I++ P + D+S + ++ VD Sbjct: 1 MRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELSTYSFVDN 60 Query: 79 LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAI 137 ++ L K PG T +L L KT RVP + L+E G P+ Sbjct: 61 VAFRLMKNNTPGNYTFILKGTKEVP-RRLLQEKRKTIGMRVPSNPIAQALLEALGEPMLS 119 Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 S G + + + K++ LII GG +T++++ + V ++R G Sbjct: 120 TSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGGYLGQ-KPTTVIDLTDDTPV-VVREG 175 >gi|297570958|ref|YP_003696732.1| Sua5/YciO/YrdC/YwlC family protein [Arcanobacterium haemolyticum DSM 20595] gi|296931305|gb|ADH92113.1| Sua5/YciO/YrdC/YwlC family protein [Arcanobacterium haemolyticum DSM 20595] Length = 215 Score = 168 bits (427), Expect = 9e-40, Method: Composition-based stats. Identities = 61/211 (28%), Positives = 96/211 (45%), Gaps = 5/211 (2%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M ++S TD+ A + + AG + +PT+TVYG+ D + A+ L K R P Sbjct: 1 MVVVSSTDTQARTAVQKAVRAGKVVCLPTDTVYGVGADPFSYDAVTALLAAKSRTRAMPP 60 Query: 61 ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 V+ I + A P S L + FWPG LT++L T T T R+ Sbjct: 61 PVLVASIEQAESLAETVPASARALMEEFWPGALTIILPARETLGWDLGET--FGTVALRM 118 Query: 120 PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 P + + PLA+ SAN++GQ T + + + + + + +DGG S G+ S+ Sbjct: 119 PDDSATRDFLAHIGPLAVTSANKTGQPPATTIADA-ETQLGESVAVYVDGGTSPGGVPSS 177 Query: 180 IVNVQ-CEKKVRILRPGGLEIETLKRAISVE 209 IV ++R G L I L R + +E Sbjct: 178 IVRWHPATDTYDVVRLGALSIADLSRIVRIE 208 >gi|260171739|ref|ZP_05758151.1| hypothetical protein BacD2_07728 [Bacteroides sp. D2] gi|315920051|ref|ZP_07916291.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313693926|gb|EFS30761.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 204 Score = 168 bits (427), Expect = 9e-40, Method: Composition-based stats. Identities = 49/202 (24%), Positives = 83/202 (41%), Gaps = 9/202 (4%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICH 63 + L++ + L+ G I PT+T+Y + AI R+ IK+ P N L Sbjct: 8 KNNNPQDLQRIIDILNDGGLIIYPTDTMYAIGCHGLKERAIERICRIKEIDPRKNNLSII 67 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-G 122 D+S + ++A VD L K PGP T +L+ T+ P N K R+P Sbjct: 68 CYDLSNISEYAKVDNNVFKLMKHNLPGPFTFILN---GTNRLPKIFRNRKEVGIRMPDNN 124 Query: 123 FTKKLIETYGHPLAIPSANRSGQIS--ITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 +++ P+ + ++ + L+IDGGI I ST+ Sbjct: 125 IIREIARLLDAPIMTTTLPYEEHEDLEYMTDPELIDEKFGDIVDLVIDGGIGGI-EPSTV 183 Query: 181 VNVQCEKKVRILRPGGLEIETL 202 V + ++ I+R G +E + Sbjct: 184 VKCT-DDELEIIRQGKGWLEEV 204 >gi|222153025|ref|YP_002562202.1| hypothetical protein SUB0873 [Streptococcus uberis 0140J] gi|222113838|emb|CAR41937.1| conserved hypothetical protein [Streptococcus uberis 0140J] Length = 199 Score = 168 bits (427), Expect = 9e-40, Method: Composition-based stats. Identities = 64/197 (32%), Positives = 102/197 (51%), Gaps = 8/197 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + E L+ G + +PTETVYG+ + + TA+ +Y++KKRP + +V+D + Sbjct: 2 IEEFEEILNNGGALVLPTETVYGIFAKALDETAVNHVYQLKKRPRDKAMNLNVADYQTIL 61 Query: 72 KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + + P L L + F PGPLT++L + + + T FR+P T LI+ Sbjct: 62 EFSKEQPSYLKDLFEAFLPGPLTIIL--KANNKVPVWINSGKSTVGFRLPNHSLTADLIK 119 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL PSAN SG S IL++ E+ D + G +STIV++ EK Sbjct: 120 KTG-PLIGPSANISGNESGKEFASILAA-FDHEVAGYEDD-QAITGQDSTIVDLSGEK-A 175 Query: 190 RILRPGGLEIETLKRAI 206 +ILR G L ++ LK+ + Sbjct: 176 KILRQGALTVDELKKVV 192 >gi|331266422|ref|YP_004326052.1| translation factor (SUA5), putative [Streptococcus oralis Uo5] gi|326683094|emb|CBZ00712.1| translation factor (SUA5), putative [Streptococcus oralis Uo5] Length = 199 Score = 168 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 60/193 (31%), Positives = 100/193 (51%), Gaps = 8/193 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + L+ G + +PTETVYGL + + A+ +Y++K+RP L +V+ + + Sbjct: 1 MDRIRQELEKGGAVVLPTETVYGLFAKALDEKAVDHVYKLKRRPRDKALNLNVASLEDIL 60 Query: 72 KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P L L + F PGPLT++L+ + + + L T FR+P T LI Sbjct: 61 HFSKNQPTYLQKLVEAFLPGPLTIILE--ANDRVPYWVNSGLATVGFRMPSHPITLDLIR 118 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL PSAN SG+ S IL + + L D ++ G +STI+++ +K V Sbjct: 119 ETG-PLIGPSANISGRASGVAFARILEDFDQEVLGLEDDAFLT--GQDSTILDLSGDK-V 174 Query: 190 RILRPGGLEIETL 202 +ILR G ++ E + Sbjct: 175 KILRQGAIKREDI 187 >gi|117918499|ref|YP_867691.1| translation factor SUA5 [Shewanella sp. ANA-3] gi|212288226|sp|A0KR66|RIMN_SHESA RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|117610831|gb|ABK46285.1| translation factor SUA5 [Shewanella sp. ANA-3] Length = 188 Score = 168 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 51/181 (28%), Positives = 82/181 (45%), Gaps = 7/181 (3%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 + + + G IA PTE VYGL D N TAI++L +K+RP LI S+ S + + Sbjct: 8 EIKDLVLNGGVIAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWQKGLILVASEFSQLVDY 67 Query: 74 ASVDPL-SLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIE 129 L + L F WPGP T V+ + + + RV + L + Sbjct: 68 VDESQLSAEQLEFAFSKWPGPFTFVMPIKPH--VSRYLCGEFDSIAVRVSAHDGVRALCQ 125 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL SAN +G+ + IL++ +I ++ G + + STI++ + K + Sbjct: 126 ALGKPLVSTSANLAGEDPALSGDEILNA-FEGKIDALVLGALGEQRQPSTIIDARSGKIL 184 Query: 190 R 190 R Sbjct: 185 R 185 >gi|237650079|ref|ZP_04524331.1| hypothetical protein SpneC1_05027 [Streptococcus pneumoniae CCRI 1974] gi|237822152|ref|ZP_04597997.1| hypothetical protein SpneC19_07568 [Streptococcus pneumoniae CCRI 1974M2] Length = 200 Score = 168 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 61/195 (31%), Positives = 101/195 (51%), Gaps = 8/195 (4%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 + + L+ G + +PTETVYGL + + A+ +Y++K+RP L +++ + Sbjct: 4 RIRQELEKGGAVVLPTETVYGLFSKALDEKAVDHVYQLKRRPRDKALNLNIASFEDILHF 63 Query: 74 ASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY 131 + P L L + F PGPLT++L+ + + ++L T FR+P T LI Sbjct: 64 SKNQPAYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIRET 121 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 G PL PSAN SGQ S + IL + + L D ++ G +STIV++ +K V+I Sbjct: 122 G-PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGDK-VKI 177 Query: 192 LRPGGLEIETLKRAI 206 LR G ++ E + + Sbjct: 178 LRQGAIKREDILARL 192 >gi|120596862|ref|YP_961436.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella sp. W3-18-1] gi|146291140|ref|YP_001181564.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella putrefaciens CN-32] gi|212288225|sp|A4Y1D2|RIMN_SHEPC RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|212288228|sp|A1RDY7|RIMN_SHESW RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|120556955|gb|ABM22882.1| translation factor SUA5 [Shewanella sp. W3-18-1] gi|145562830|gb|ABP73765.1| translation factor SUA5 [Shewanella putrefaciens CN-32] Length = 188 Score = 168 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 50/178 (28%), Positives = 77/178 (43%), Gaps = 7/178 (3%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 + + G IA PTE VYGL D N TAI++L +K+RP LI SD + + Sbjct: 11 DIVLNGGVIAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWQKGLILVASDFQQLLAYVDE 70 Query: 77 DPL-SLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYG 132 L + L F WPGP T V+ + + + + RV + L Sbjct: 71 SQLTAEQLEFAFSKWPGPFTFVMPIKA--QVSKYLCGEFDSIAVRVSAHAGVQALCRALN 128 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 PL SAN +G+ IL + +I ++ G + + STI++ + K +R Sbjct: 129 KPLVSTSANLAGEDPALTAAEIL-ADFTGKIDALVLGELGEQRQPSTIIDARSGKILR 185 >gi|90413785|ref|ZP_01221773.1| Putative Sua5/YciO/YrdC family protein [Photobacterium profundum 3TCK] gi|90325254|gb|EAS41751.1| Putative Sua5/YciO/YrdC family protein [Photobacterium profundum 3TCK] Length = 192 Score = 168 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 48/194 (24%), Positives = 83/194 (42%), Gaps = 8/194 (4%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I + D + L++ L +G IA PTE V+G+ D + AI +L +K+RP L Sbjct: 1 MVIYEV-DMDNLQQVVSALQSGEVIAYPTEGVFGVGCDPDHSQAIEKLLALKQRPIEKGL 59 Query: 61 ICHVSDISMVKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 I ++ ++ + L WPGP+T V+ + + PL T + Sbjct: 60 ILIAANYQQLQPYIDDTQLSDLQKQKIFSTWPGPVTWVMPVKKG--VSPLLTGKFTSIAV 117 Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 RV +KL +G P+ SAN +G V + S + + + I++G Sbjct: 118 RVSDHPLVQKLCHQFGKPITSTSANLTGLPPCKTVAEV-HSQLGEHLSAILEGETGGREN 176 Query: 177 ESTIVNVQCEKKVR 190 + I + + +R Sbjct: 177 PTEIRDAFSDTVLR 190 >gi|149003882|ref|ZP_01828705.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae SP14-BS69] gi|147758112|gb|EDK65116.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae SP14-BS69] Length = 199 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 61/195 (31%), Positives = 101/195 (51%), Gaps = 8/195 (4%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 + + L+ G + +PTETVYGL + + A+ +Y++K+RP L +++ + Sbjct: 3 RIRQELEKGGAVVLPTETVYGLFSKALDEKAVDHVYQLKRRPRDKALNLNIASFEDILHF 62 Query: 74 ASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY 131 + P L L + F PGPLT++L+ + + ++L T FR+P T LI Sbjct: 63 SKNQPAYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIRET 120 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 G PL PSAN SGQ S + IL + + L D ++ G +STIV++ +K V+I Sbjct: 121 G-PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGDK-VKI 176 Query: 192 LRPGGLEIETLKRAI 206 LR G ++ E + + Sbjct: 177 LRQGAIKREDILARL 191 >gi|323127210|gb|ADX24507.1| Sua5/YciO/YrdC family protein [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 196 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 55/192 (28%), Positives = 92/192 (47%), Gaps = 6/192 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + +++G + +PTETVYGL + + A+ +Y++K+RP + +V+D + Sbjct: 1 MERLASIIESGGALVLPTETVYGLFAKALDEKAVNAVYDLKQRPRDKAMNLNVADFDSIL 60 Query: 72 KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130 + P L L + F PGPLT++L + + + L T FR+P + Sbjct: 61 AFSKEQPTYLEKLYQAFLPGPLTVILK--ANNHVPHWINSGLATVGFRLPSHPITAALIQ 118 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 PL PSAN SG+ S I+ + I D ++ G +STI+++ E V Sbjct: 119 KTGPLIGPSANLSGKPSGKVFDQIIQDFDFQVIGYADDPFLT--GKDSTILDLSGESPV- 175 Query: 191 ILRPGGLEIETL 202 ILR G + E L Sbjct: 176 ILRQGAITKEEL 187 >gi|85059382|ref|YP_455084.1| hypothetical protein SG1404 [Sodalis glossinidius str. 'morsitans'] gi|84779902|dbj|BAE74679.1| conserved hypothetical protein [Sodalis glossinidius str. 'morsitans'] Length = 206 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 42/188 (22%), Positives = 76/188 (40%), Gaps = 4/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A + L G I PT++ Y L + TA+ R+ I++ + D+S Sbjct: 14 PRLVSQAVDLLRKGAVIVYPTDSGYALGCQLEDKTAMERICRIRQLDGHHNFTLVCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD + L K PG T +L L + KT RVP L Sbjct: 74 ELSTYAQVDNQAFRLMKNNTPGKYTFILKATKEVP-RRLMSDKRKTIGLRVPSNPIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E P+ + G + + + K++ L+I GG +T++++ + Sbjct: 133 LEVLDKPMMSTTLMLPGNDFAESDPESICDHLGKQVDLVIHGGFLGQ-QPTTVIDLT-DP 190 Query: 188 KVRILRPG 195 R++R G Sbjct: 191 TPRVVRQG 198 >gi|304412740|ref|ZP_07394343.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica OS183] gi|307305795|ref|ZP_07585541.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica BA175] gi|304348950|gb|EFM13365.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica OS183] gi|306911288|gb|EFN41714.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica BA175] Length = 188 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 50/178 (28%), Positives = 77/178 (43%), Gaps = 7/178 (3%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 + + G IA PTE VYGL D N TAI++L +K+RP LI SD + + Sbjct: 11 DIILQGGVIAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWQKGLILVASDFQQLLAYVDE 70 Query: 77 DPL-SLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYG 132 L + L F WPGP T V+ + + + + RV + L Sbjct: 71 SQLTAEQLEFAFSKWPGPFTFVMPIKAH--VSKYLCGEFDSIAVRVSAHAGVQTLCRALN 128 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 PL SAN +G+ IL + +I ++ G + + STI++ + K +R Sbjct: 129 KPLVSTSANLAGEDPALTAAEIL-ADFTGKIDALVLGELGEQRQPSTIIDARSGKILR 185 >gi|296170242|ref|ZP_06851835.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895118|gb|EFG74836.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 222 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 48/195 (24%), Positives = 83/195 (42%), Gaps = 5/195 (2%) Query: 24 PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP-LSLH 82 + +PT+TVYG+ D+ N A+ L K R P+ V ++ P + Sbjct: 32 LVVMPTDTVYGIGADAFNSAAVTALLSAKGRGRDMPVGVLVGSWHTIEGLVYTMPGGARD 91 Query: 83 LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANR 142 L + FWPG L+LV+ + T R+P + P+A+ SAN Sbjct: 92 LIRAFWPGALSLVVTQAPSLQW--DLGDARGTVMLRMPLHPVAIELLREVGPMAVSSANV 149 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202 SG+ + + + + + + +D G ++ STIV++ RILRPG + E + Sbjct: 150 SGRPAAVDAAEA-RDQLGELVDVYLDAGTAQQQAASTIVDLTGPAP-RILRPGPVSAERI 207 Query: 203 KRAISVELEYCVDET 217 + V+ E + Sbjct: 208 AEVLGVDAESLTAQG 222 >gi|237739267|ref|ZP_04569748.1| SUA5 protein [Fusobacterium sp. 2_1_31] gi|229422875|gb|EEO37922.1| SUA5 protein [Fusobacterium sp. 2_1_31] Length = 217 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 64/210 (30%), Positives = 103/210 (49%), Gaps = 10/210 (4%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 I I+D + + L G I PT+TVYGLA N +I +Y K R +PLI Sbjct: 10 ISDISDDKW-TELADELKEGSLIIYPTDTVYGLASIVTNEQSINNIYLAKSRSFTSPLIA 68 Query: 63 HVSDISMVKKHASVDPLSL----HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 +S + V++ A++ + LA FWPG LT++L I + + T R Sbjct: 69 LLSSVDKVEEVATISDENREILEKLAHAFWPGALTVILKRKEH--IPNIMVSGGDTIGVR 126 Query: 119 VPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 +P K+I+ G LA SAN SG+ + + LS +I + +++DGG K+G Sbjct: 127 IPNLDLAIKIIDLAGGILATTSANISGEATPKSYNE-LSEAIKSRVDILVDGGECKLGEA 185 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAIS 207 STI+++ + +ILR G + + + + I Sbjct: 186 STIIDLTSDVP-KILRNGAISTDEITKIIG 214 >gi|170781880|ref|YP_001710212.1| hypothetical protein CMS_1485 [Clavibacter michiganensis subsp. sepedonicus] gi|169156448|emb|CAQ01596.1| conserved hypothetical protein [Clavibacter michiganensis subsp. sepedonicus] Length = 320 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 60/219 (27%), Positives = 102/219 (46%), Gaps = 10/219 (4%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 +R A + + G + IPT+TVYG+A D+ NP A++RL + K R P + S + Sbjct: 20 GMRLARQAVGRGEVVVIPTDTVYGIAADAFNPEAVQRLLDAKGRGRDAPPPVLIPGQSTL 79 Query: 71 KKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129 A V + + FWPG LT++L + + T R+P ++ Sbjct: 80 DALADFVPDVVRRMVDEFWPGGLTVILVAQPS--LVWDLGETRGTVALRMPANSYALVLL 137 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ----C 185 PLA+ SAN++GQ + + + + + + + +DGG + STIV+ Sbjct: 138 AETGPLAVSSANKTGQPAAATAQEAV-DQLGESVDIFLDGGAAGG-AASTIVDASRVTQA 195 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQ-SP 223 +VRI+R G + +++ I ELE V P+ +P Sbjct: 196 GGRVRIVREGAITRAQIQQLIGDELEPVVTAPVEPEQAP 234 >gi|602960|gb|AAB59987.1| ORF1 [Escherichia coli str. K-12 substr. W3110] Length = 183 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 42/178 (23%), Positives = 74/178 (41%), Gaps = 4/178 (2%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 + G I PT++ Y L + A+ R+ I++ P + D+S + ++ VD Sbjct: 1 VRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELSTYSFVDN 60 Query: 79 LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAI 137 ++ L K PG T +L L KT RVP + L+E G P+ Sbjct: 61 VAFRLMKNNTPGNYTFILKGTKEVP-RRLLQEKRKTIGMRVPSNPIAQALLEALGEPMLS 119 Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 S G + + + K++ LII GG +T++++ + V ++R G Sbjct: 120 TSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGGYLGQ-KPTTVIDLTDDTPV-VVREG 175 >gi|294635973|ref|ZP_06714415.1| Sua5/YciO/YrdC/YwlC family protein [Edwardsiella tarda ATCC 23685] gi|291090702|gb|EFE23263.1| Sua5/YciO/YrdC/YwlC family protein [Edwardsiella tarda ATCC 23685] Length = 206 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 39/188 (20%), Positives = 74/188 (39%), Gaps = 4/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++ + L G I PT++ Y L A+ R+ I++ + + D+S Sbjct: 14 PRLIKQVVDILRKGGVIVYPTDSGYALGCMLEEKNAMERICRIRRIDSNHNFTLVCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD + L K PG T +L L + KT RVP + L Sbjct: 74 ELSSYAFVDNAAFRLLKNNTPGGYTFILKASKEVP-RRLMSEKRKTIGLRVPSNPIAQDL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + + + + K + L+I GG +T++++ + Sbjct: 133 LAELGEPLMSTTLMLPDSEFAESDPEEIQERLGKLVDLVIHGGYLGQ-QPTTVIDMTDDN 191 Query: 188 KVRILRPG 195 +++R G Sbjct: 192 P-QVVRVG 198 >gi|254428427|ref|ZP_05042134.1| Sua5/YciO/YrdC/YwlC family protein [Alcanivorax sp. DG881] gi|196194596|gb|EDX89555.1| Sua5/YciO/YrdC/YwlC family protein [Alcanivorax sp. DG881] Length = 207 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 42/195 (21%), Positives = 79/195 (40%), Gaps = 3/195 (1%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +R+A + + +G IA PT+T Y L A+ RL +++ + D+S Sbjct: 14 PRLIRQAVDVIRSGGLIAYPTDTTYALGCGIGEKAALDRLIRLRQLDKKHEFTLLCHDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD L K PG T +L + L +T RVP + L Sbjct: 74 ALAIYAKVDNPDYRLLKAHTPGAYTFILQGTTEVP-RRLMHPKKRTIGIRVPDHAICQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + +G P+ + + + + + L+IDGG E+T++++ + Sbjct: 133 LAEHGEPIMTSTCHLPNDEFPLTDPQDVRDFLENHVDLVIDGGFCGT-TETTVISLSEGE 191 Query: 188 KVRILRPGGLEIETL 202 ++R G I+ + Sbjct: 192 GPVVVREGAGPIDAI 206 >gi|212277721|sp|A4WF91|RIMN_ENT38 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN Length = 190 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 49/184 (26%), Positives = 79/184 (42%), Gaps = 8/184 (4%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 ++ +A + L IA PTE V+G+ D + TA+ RL E+K+RP LI ++ + Sbjct: 9 SIAQAVDVLKNEEVIAYPTEAVFGVGCDPDSETAVTRLLELKQRPVEKGLILIAANFEQL 68 Query: 71 KKHASVDPLSLHL---AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 K + L+ WPGP+T V L +T T + RV + Sbjct: 69 KPYIDDSMLTEQQRNTIFSAWPGPVTFVFPALPST--PSWLTGRFDSLAVRVTDHPLVVE 126 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L ET+G PL SAN +G + +L + P+++ G S I + Sbjct: 127 LCETFGKPLVSTSANLTGLPPCRTSQEVL-AQFGDGFPVVV-GETGGRLNPSEIRDALTG 184 Query: 187 KKVR 190 ++ R Sbjct: 185 ERFR 188 >gi|320457559|dbj|BAJ68180.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 224 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 59/210 (28%), Positives = 97/210 (46%), Gaps = 8/210 (3%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 + +TD + L +A + G + IPT+TVYG+A D RN AI R+Y +K+RP L Sbjct: 8 TLKVTDES-LAQAARVIRDGGLVVIPTDTVYGVACDPRNKAAIDRIYRLKRRPRYKALQV 66 Query: 63 HVSDISMVKKHASVDPLSL-HLAKLFWPG---PLTLVLDLLSTTDIHPLSTANLKTACFR 118 ++ + + + P L L+ F PG P+ + + + + T R Sbjct: 67 LLASTDQLDELSLDLPSPLNRLSAAFLPGAFSPIAVARPDCTLETLADTADGRPGTQGIR 126 Query: 119 VPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 +P I PLA SANRSG S V+ + + E+ L +DGG ++ + S Sbjct: 127 IPNSALCLAILKATGPLAASSANRSGDESAQTVQEAV-DAFGSEVDLYLDGGPTQGHVSS 185 Query: 179 TIVNVQ--CEKKVRILRPGGLEIETLKRAI 206 T+V + ILR G + +++A+ Sbjct: 186 TVVKADPYARDGIEILREGVIAQNVIRKAL 215 >gi|270160110|ref|ZP_06188766.1| Sua5/YciO/YrdC/YwlC family protein [Legionella longbeachae D-4968] gi|289165112|ref|YP_003455250.1| translation factor [Legionella longbeachae NSW150] gi|269988449|gb|EEZ94704.1| Sua5/YciO/YrdC/YwlC family protein [Legionella longbeachae D-4968] gi|288858285|emb|CBJ12153.1| putative translation factor [Legionella longbeachae NSW150] Length = 206 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 51/197 (25%), Positives = 87/197 (44%), Gaps = 6/197 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + LRKA ++ G I PT++ Y L N +A+ R+ +++ + + D+S Sbjct: 14 ARLLRKAVNIIEDGGIIVYPTDSGYALGCGLGNKSALERIRRLRQLDKNHNMTLVCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCG-FTKK 126 + +A V L K F PG T +L+ +T ++ L KT RVP T Sbjct: 74 QLGLYARVSNPIFRLLKAFTPGAYTFILN--ATHEVPRLMLHPKRKTLGLRVPDNVITLA 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+E PL + G + + + + +I L+IDGG +T+V++ + Sbjct: 132 LLECLEAPLMSTTLILPGAKAPLSEPEAIRDLLGNQIDLVIDGGHCGQ-EPTTVVDLTGD 190 Query: 187 KKVRILRPGGLEIETLK 203 V I+R G + E K Sbjct: 191 YPV-IIREGKGDPEPFK 206 >gi|261250597|ref|ZP_05943172.1| YrdC family protein [Vibrio orientalis CIP 102891] gi|260939166|gb|EEX95153.1| YrdC family protein [Vibrio orientalis CIP 102891] Length = 185 Score = 167 bits (425), Expect = 1e-39, Method: Composition-based stats. Identities = 44/182 (24%), Positives = 80/182 (43%), Gaps = 7/182 (3%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 +A L G IA PTE V+G+ D NP AI++L E+K+RP LI ++ + Sbjct: 5 ERALSALKQGEVIAYPTEGVFGVGCDPDNPNAIKKLLELKQRPVEKGLILIAANYQQLLP 64 Query: 73 HASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + LS + WPGP+T ++ S+ + + + RV +K+ Sbjct: 65 YIDQQALSAEQLERVQQTWPGPVTWIMP--SSDKVSNWVSGQYDSIAVRVTDHPLVQKMC 122 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 +G PL SAN +G+ + + + ++ +++G S I + + + Sbjct: 123 NAFGKPLTSTSANLTGEPPCVTTEQVYQH-LGDKLVAVLEGQTGGRTNPSEIRDARTSQV 181 Query: 189 VR 190 +R Sbjct: 182 LR 183 >gi|307153963|ref|YP_003889347.1| Sua5/YciO/YrdC/YwlC family protein [Cyanothece sp. PCC 7822] gi|306984191|gb|ADN16072.1| Sua5/YciO/YrdC/YwlC family protein [Cyanothece sp. PCC 7822] Length = 217 Score = 167 bits (425), Expect = 1e-39, Method: Composition-based stats. Identities = 53/206 (25%), Positives = 95/206 (46%), Gaps = 10/206 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + + L G + PT+TVY + D +A+ R+ ++K+ PL S +S Sbjct: 14 KRQIDQIVDALKRGAIMLYPTDTVYAIGCDMNTKSAVERVRKLKQLSNDKPLTFLSSSLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKK 126 + ++A V + + K PGP T +L +T + L + KT RVP + Sbjct: 74 NISEYAVVTDQAYRIMKRLIPGPYTFLLP--ATKLVPKLVMSPKRKTTGIRVPDNEVCQA 131 Query: 127 LIETYGHPLAIPSANRSGQ--ISIT--NVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 +++T G+P+ SA+ T K L S+ + +IID G++ STI++ Sbjct: 132 ILQTLGNPIISTSAHLPDDDGDFPTLGLEKARLFDSMDSLVDIIIDTGVNPGFEVSTILD 191 Query: 183 VQCEKKVRILRPGGLEIETLKRAISV 208 + ++ V + GL E L+ I+V Sbjct: 192 LTQDEPVIVRE--GLGWEQLQNWIAV 215 >gi|23466265|ref|NP_696868.1| Sua5/YciO/YrdC family protein [Bifidobacterium longum NCC2705] gi|189440759|ref|YP_001955840.1| putative translation factor [Bifidobacterium longum DJO10A] gi|227546618|ref|ZP_03976667.1| translation factor Sua5 [Bifidobacterium longum subsp. infantis ATCC 55813] gi|312134012|ref|YP_004001351.1| translation factor [Bifidobacterium longum subsp. longum BBMN68] gi|322689784|ref|YP_004209518.1| hypothetical protein BLIF_1602 [Bifidobacterium longum subsp. infantis 157F] gi|322691730|ref|YP_004221300.1| hypothetical protein BLLJ_1541 [Bifidobacterium longum subsp. longum JCM 1217] gi|23327014|gb|AAN25504.1| conserved protein in the Sua5/YciO/YrdC family [Bifidobacterium longum NCC2705] gi|189429194|gb|ACD99342.1| Putative translation factor [Bifidobacterium longum DJO10A] gi|227212935|gb|EEI80814.1| translation factor Sua5 [Bifidobacterium longum subsp. infantis ATCC 55813] gi|311773317|gb|ADQ02805.1| Putative translation factor [Bifidobacterium longum subsp. longum BBMN68] gi|320456586|dbj|BAJ67208.1| conserved hypothetical protein [Bifidobacterium longum subsp. longum JCM 1217] gi|320461120|dbj|BAJ71740.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis 157F] Length = 224 Score = 167 bits (425), Expect = 1e-39, Method: Composition-based stats. Identities = 59/210 (28%), Positives = 96/210 (45%), Gaps = 8/210 (3%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 + +TD + L +A + G + IPT+TVYG+A D RN AI R+Y +K+RP L Sbjct: 8 TLKVTDES-LAQAARVIRDGGLVVIPTDTVYGVACDPRNKAAIDRIYRLKRRPRYKALQV 66 Query: 63 HVSDISMVKKHASVDPLSL-HLAKLFWPG---PLTLVLDLLSTTDIHPLSTANLKTACFR 118 ++ + + P L L+ F PG P+ + + + + T R Sbjct: 67 LLASTDQLDELGLDLPSPLNRLSAAFLPGAFSPIAVARPDCTLETLADTADGRPGTQGIR 126 Query: 119 VPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 +P I PLA SANRSG S V+ + + E+ L +DGG ++ + S Sbjct: 127 IPNSALCLAILKATGPLAASSANRSGDESAQTVQEAV-DAFGSEVDLYLDGGPTQGHVSS 185 Query: 179 TIVNVQ--CEKKVRILRPGGLEIETLKRAI 206 T+V + ILR G + +++A+ Sbjct: 186 TVVKADPYARDGIEILREGVIAQNVIRKAL 215 >gi|68249744|ref|YP_248856.1| hypothetical protein NTHI1369 [Haemophilus influenzae 86-028NP] gi|229844847|ref|ZP_04464985.1| putative translation factor, SUA5 [Haemophilus influenzae 6P18H1] gi|68057943|gb|AAX88196.1| putative translation factor, SUA5 [Haemophilus influenzae 86-028NP] gi|229812228|gb|EEP47919.1| putative translation factor, SUA5 [Haemophilus influenzae 6P18H1] gi|301169939|emb|CBW29543.1| conserved protein [Haemophilus influenzae 10810] Length = 207 Score = 167 bits (425), Expect = 1e-39, Method: Composition-based stats. Identities = 52/193 (26%), Positives = 83/193 (43%), Gaps = 7/193 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A E L G I PT++ Y L + A+ R+ I+K P + SD+S Sbjct: 14 ARLINQAVEILQKGGVIVYPTDSGYALGCMMGDKHAMDRIVAIRKLPEGHNFTLVCSDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A+V+ + L K PG T +L L T+ KT RVP L Sbjct: 74 ELSTYATVNNTAYRLIKNNTPGRYTFILTATKELP-RRLMTSKRKTIGLRVPDNKIALDL 132 Query: 128 IETYGHPLAIPSANRSGQISIT-NVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQC 185 + G P+ S + T + + + ++ LII GG +G E +T+V++ Sbjct: 133 LSALGEPILSCSLMLPNEEHTTQSDPEEIRDRLEHQVDLIIHGGY--LGQEPTTVVDLTE 190 Query: 186 EKKVRILRPGGLE 198 E V ILR G Sbjct: 191 ESPV-ILREGSGS 202 >gi|293390210|ref|ZP_06634544.1| SUA5 protein [Aggregatibacter actinomycetemcomitans D7S-1] gi|290950744|gb|EFE00863.1| SUA5 protein [Aggregatibacter actinomycetemcomitans D7S-1] Length = 207 Score = 167 bits (425), Expect = 1e-39, Method: Composition-based stats. Identities = 48/187 (25%), Positives = 81/187 (43%), Gaps = 7/187 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E L G I PT++ Y L + A+ R+ I++ P + SD+S + Sbjct: 17 INQAVEILRNGGVIVYPTDSGYALGCMIGDKHAMDRIVHIRQLPEGHNFTLVCSDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 ++ V + L K PG T +L L + KT RVP L++ Sbjct: 77 TYSLVTNSAYRLIKNNTPGRYTFILTATKELP-RRLMASKRKTIGIRVPDNQIALDLLKA 135 Query: 131 YGHPLAIPSANRSGQISIT-NVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKK 188 G P+ S + +T + + + ++ LII GG +G E +T+V++ + Sbjct: 136 LGEPILSCSLMLPNEEHLTQSDPEEIRDRLEHQVDLIIHGGY--LGQEPTTVVDLTGDTP 193 Query: 189 VRILRPG 195 V ILR G Sbjct: 194 V-ILREG 199 >gi|119476916|ref|ZP_01617197.1| putative translation factor (SUA5) [marine gamma proteobacterium HTCC2143] gi|119449723|gb|EAW30960.1| putative translation factor (SUA5) [marine gamma proteobacterium HTCC2143] Length = 207 Score = 167 bits (425), Expect = 1e-39, Method: Composition-based stats. Identities = 45/190 (23%), Positives = 79/190 (41%), Gaps = 5/190 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S + +A + L G I PT++ Y + N A+ + ++K + + D+S Sbjct: 14 SRLINQAVDILKGGGVIVYPTDSGYAIGCQLGNKKALDTIRRVRKLDSSHNFTLVCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD + L K PGP T +L S L +T RVP +L Sbjct: 74 ELGSYAKVDNTAYRLLKNHTPGPYTFILKATSEVP-KRLMHPKRRTIGLRVPENNIALQL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST-IVNVQCE 186 + P+ + G + + ++ E+ L+IDGG G+E T ++++ + Sbjct: 133 LAGLNEPMMSVTMILPGDDLPMTDPYDIRQTLEHELDLVIDGGYC--GMEPTSVIDLVDD 190 Query: 187 KKVRILRPGG 196 V I R G Sbjct: 191 MPVIIRRGQG 200 >gi|220916607|ref|YP_002491911.1| Sua5/YciO/YrdC/YwlC family protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219954461|gb|ACL64845.1| Sua5/YciO/YrdC/YwlC family protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 212 Score = 167 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 62/189 (32%), Positives = 90/189 (47%), Gaps = 5/189 (2%) Query: 20 DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL 79 AG + PTET YGL + + A+ RL K RP PL +D V + AS++ Sbjct: 17 RAGGIVVYPTETFYGLGALASDDAALVRLAAAKLRPEGKPLPLVAADREQVDRVASLEGA 76 Query: 80 SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIP 138 + LA WPGPLTLVL + TA T R+P + L G L Sbjct: 77 AARLAGRLWPGPLTLVLPARPG--LSEAITAGSGTVGVRIPGSEVARALARMAGGALVST 134 Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLE 198 SAN SG V L +++ ++ ++D G + GL ST+V + E +R++RPG + Sbjct: 135 SANLSGGPPPDRV-EALDAALRGQVDHVLDAGPTPGGLPSTVVAIAGE-TLRVVRPGAVS 192 Query: 199 IETLKRAIS 207 IE + A+ Sbjct: 193 IEQVTAALG 201 >gi|172036646|ref|YP_001803147.1| putative Sua5/YciO/YrdC/YwlC [Cyanothece sp. ATCC 51142] gi|171698100|gb|ACB51081.1| putative Sua5/YciO/YrdC/YwlC [Cyanothece sp. ATCC 51142] Length = 221 Score = 167 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 51/208 (24%), Positives = 97/208 (46%), Gaps = 10/208 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + C+ L G + PT+TVY + D + +A++R+ ++K+ PL S +S Sbjct: 18 PRRIDEICDSLRKGAIMLYPTDTVYAIGCDLNSKSAVQRVRQLKQLSNDKPLTFLCSSLS 77 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKK 126 + ++A V + + K PGP T +L +T + L + KT RVP + Sbjct: 78 NISEYAGVTDEAYRIMKRVIPGPYTFLLP--ATKAVPKLVMSPKRKTTGIRVPDHPICQA 135 Query: 127 LIETYGHPLAIPSANRSGQ----ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 ++ +P+ SA+ + +I K L + ++ +IID + STI++ Sbjct: 136 ILTELNNPIISTSAHLPDEEGEFPTIGLEKARLFDILESQVDMIIDNSLEPGFDVSTILD 195 Query: 183 VQCEKKVRILRPGGLEIETLKRAISVEL 210 + + I+R G L E L+ ++VE+ Sbjct: 196 MTSD-PPSIIRQG-LGWEALQNWVTVEV 221 >gi|153875764|ref|ZP_02003416.1| translation factor [Beggiatoa sp. PS] gi|152067772|gb|EDN66584.1| translation factor [Beggiatoa sp. PS] Length = 208 Score = 167 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 50/207 (24%), Positives = 85/207 (41%), Gaps = 8/207 (3%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 Q +I N + + + + G I PT++ Y L + A+ R+ I++ Sbjct: 3 QFFTIHPQNPQQRLISQTVDIIKKGGVIVYPTDSSYALGCYMGDKAAMERISFIRQTDKN 62 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 + S + +A+V+ + L K PGP T +L + L KT Sbjct: 63 HNFTLVCRAFSEIGTYANVNNTAFRLMKSLTPGPYTFILKATNEVP-RRLQNPKRKTIGV 121 Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 RVP + ++E G PL + G+ + + + K++ LIIDGG Sbjct: 122 RVPDHSIVQAIVEMLGEPLMSSTLIMPGKETPETEPDTIKELLQKQVDLIIDGGNCGF-E 180 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLK 203 +TIV++ E +ILR G I+ L Sbjct: 181 ATTIVDMMTESP-QILRQGKGPIDVLN 206 >gi|269128125|ref|YP_003301495.1| Sua5/YciO/YrdC/YwlC family protein [Thermomonospora curvata DSM 43183] gi|268313083|gb|ACY99457.1| Sua5/YciO/YrdC/YwlC family protein [Thermomonospora curvata DSM 43183] Length = 216 Score = 167 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 50/189 (26%), Positives = 87/189 (46%), Gaps = 7/189 (3%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD-PLS 80 G + +PT+TVYG+ + P A+ L + K R P + + + P Sbjct: 27 GELVVLPTDTVYGVGCGAFLPDAVDALLKAKGRGRQMPAPVLIGSPEALADLVTDTGPYG 86 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPS 139 L + FWPG LTLV + + + T R+P +L+ G P+A+ S Sbjct: 87 PALIEEFWPGALTLVFPAVPG--LARVLGDAQGTVAVRMPRDELALELLREAG-PMAVSS 143 Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEI 199 AN +G+ + + + + + + +DGG + +G S+IV++ ++ R+LR G L Sbjct: 144 ANLTGRPAARTAGEAF-AQLGESVAVYLDGGPAPLGEPSSIVDLSGDEP-RLLRAGALAA 201 Query: 200 ETLKRAISV 208 ETL+R Sbjct: 202 ETLRRVCGT 210 >gi|218438456|ref|YP_002376785.1| Sua5/YciO/YrdC/YwlC family protein [Cyanothece sp. PCC 7424] gi|218171184|gb|ACK69917.1| Sua5/YciO/YrdC/YwlC family protein [Cyanothece sp. PCC 7424] Length = 217 Score = 167 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 49/207 (23%), Positives = 96/207 (46%), Gaps = 10/207 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++ + + L +G + PT+TVY + D +A+ R+ ++K+ PL S +S Sbjct: 14 QRSIEQISDALKSGAIMLYPTDTVYAIGCDMNTKSAVERVRQLKQLSNDKPLTFLCSSLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKK 126 + ++A V + + K PGP T +L +T + L + KT RVP + Sbjct: 74 NISEYALVTDQAYRIMKRLIPGPYTFLLP--ATKLVPKLVMSPKRKTTGIRVPDNEVCQA 131 Query: 127 LIETYGHPLAIPSANRSGQI--SITN--VKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 L+ + +P+ SA+ + T K L ++ K + +IID G+ STI++ Sbjct: 132 LLTSLDNPIISASAHLPDEEGDFPTMGVEKARLFDALDKLVDIIIDSGVEPGFEVSTIID 191 Query: 183 VQCEKKVRILRPGGLEIETLKRAISVE 209 + + + + + GL E L ++++ Sbjct: 192 LTDNEPIIVRQ--GLGWEELDNWMALK 216 >gi|332290311|ref|YP_004421163.1| conserved hypothetical protein, yrdC domain protein [Gallibacterium anatis UMN179] gi|330433207|gb|AEC18266.1| conserved hypothetical protein, yrdC domain protein [Gallibacterium anatis UMN179] Length = 207 Score = 167 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 53/195 (27%), Positives = 84/195 (43%), Gaps = 7/195 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A + L G I PT++ Y L + A+ R+ I+K P + SD+S Sbjct: 14 QRLINQAVDILRDGGVIVYPTDSGYALGCMLGDKHAMDRIIRIRKLPEGHNFTLVCSDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 + ++ V L K PG T +L L T+ KT RVP L Sbjct: 74 ELSNYSLVTNTIYRLIKNNTPGRYTFILTATKELP-RRLMTSKRKTIGIRVPDNNIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISIT-NVKHILSSSICKEIPLIIDGGISKIGL-ESTIVNVQC 185 ++T G P+ S G+ T + + + + ++ LII GG +G +T+V++ Sbjct: 133 LKTLGEPILSCSLMLPGEEYFTLSDPEEIRNLLENQVDLIIHGGY--LGQDPTTVVDLTV 190 Query: 186 EKKVRILRPGGLEIE 200 E V ILR G IE Sbjct: 191 EPPV-ILREGSGSIE 204 >gi|163788700|ref|ZP_02183145.1| translation factor [Flavobacteriales bacterium ALC-1] gi|159875937|gb|EDP69996.1| translation factor [Flavobacteriales bacterium ALC-1] Length = 206 Score = 167 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 50/197 (25%), Positives = 78/197 (39%), Gaps = 9/197 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP-LICHVSD 66 + A++ L G I PT+TVYGL D N A+ R+ IK D Sbjct: 13 NPKAIQNVVNVLKRGGLIIYPTDTVYGLGCDITNIKALERIAIIKGVKLEKSNFSFVCED 72 Query: 67 ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 +S + + +D + + K PG T +L P KT RVP Sbjct: 73 LSNLSDYVKQIDTRTFKILKRALPGAYTFILPGSKNL---PNPFKKRKTVGIRVPDNSIA 129 Query: 125 KKLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 L+E G+P+ S I T ++ + L+IDGG STI+++ Sbjct: 130 LALVEALGNPIVSTSIRDEDDVIEYTTDPELILEKWDDLVDLVIDGGYGG-NEASTIIDL 188 Query: 184 QCEKKVRILRPGGLEIE 200 + + I+R G ++E Sbjct: 189 SEDDPI-IVREGKGDLE 204 >gi|197122573|ref|YP_002134524.1| Sua5/YciO/YrdC/YwlC family protein [Anaeromyxobacter sp. K] gi|220917357|ref|YP_002492661.1| Sua5/YciO/YrdC/YwlC family protein [Anaeromyxobacter dehalogenans 2CP-1] gi|196172422|gb|ACG73395.1| Sua5/YciO/YrdC/YwlC family protein [Anaeromyxobacter sp. K] gi|219955211|gb|ACL65595.1| Sua5/YciO/YrdC/YwlC family protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 207 Score = 167 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 52/195 (26%), Positives = 93/195 (47%), Gaps = 6/195 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A L +G IA PT+T YG+ D + AI R+Y++K+ P + L D++ Sbjct: 16 PRVVERAVSALSSGGVIAYPTDTFYGIGCDLFDKRAIERIYQLKQLPRTHELAFICQDLA 75 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 + ++A VD + + + PGP T +L +T + L KT R+P +L Sbjct: 76 EISRYAIVDNAAYRVLRRKVPGPFTFILP--ATRLVPELVLRRQKTVGIRIPDSPIALEL 133 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + GHPL SA + I H + + + LI+DGG + S+++++ + Sbjct: 134 VRRLGHPLISTSAAKPEGE-ILIDAHDIKDELGHGLDLILDGGF-RPAEPSSVIDLSGPE 191 Query: 188 KVRILRPGGLEIETL 202 V ++R G ++ L Sbjct: 192 PV-VVRAGKGDVSDL 205 >gi|329116378|ref|ZP_08245095.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus parauberis NCFD 2020] gi|326906783|gb|EGE53697.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus parauberis NCFD 2020] Length = 196 Score = 167 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 53/196 (27%), Positives = 91/196 (46%), Gaps = 6/196 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++ E + G + +PTETVYG+ + + A+ +Y++K+RP + +++ + Sbjct: 1 MKELIEQIKNGQAVVLPTETVYGIFAKAMDENAVDNVYQLKQRPRDKAMNLNIASYQDIL 60 Query: 72 KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130 ++ P L L F PGPLT++L + + + T FR+P I Sbjct: 61 DYSQGQPAYLEKLVNAFLPGPLTIIL--KANQKVPAWINSGKTTVGFRMPNHPVTCQIIK 118 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 PL PSAN SG S K I+ + ++ D + G +STI++V K + Sbjct: 119 ETGPLIGPSANISGDDSGKTFKAIMKA-FNYQVDGYSDDA-ALTGQDSTIIDVSGLK-AK 175 Query: 191 ILRPGGLEIETLKRAI 206 ILR G + E L + Sbjct: 176 ILRQGSITKEELLDVV 191 >gi|170727252|ref|YP_001761278.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella woodyi ATCC 51908] gi|169812599|gb|ACA87183.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella woodyi ATCC 51908] Length = 213 Score = 167 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 42/192 (21%), Positives = 74/192 (38%), Gaps = 4/192 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A + G I PT++ Y L A+ R+ I++ + D S Sbjct: 21 ARLINQAVNAIKNGGVIVYPTDSGYALGCLLGEKDAMSRIARIRQIDNDHNFSLMCRDQS 80 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD + + K PGP T + L KT RVP L Sbjct: 81 ELSTYAKVDNQAYRVLKHNTPGPYTFIFKASKEVP-KRLQNPKKKTIGIRVPDNVIALAL 139 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E PL S G+ + + + ++ +II GG +T++++ E Sbjct: 140 LEALDEPLMSTSLILPGEEFTESDPEHIRDILEHQVDVIIHGGYLGE-KPTTVIDL-SEG 197 Query: 188 KVRILRPGGLEI 199 + I+R G +I Sbjct: 198 DIEIIREGAGDI 209 >gi|114561217|ref|YP_748730.1| SUA5/yciO/yrdC domain-containing protein [Shewanella frigidimarina NCIMB 400] gi|122301201|sp|Q08A23|RIMN_SHEFN RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|114332510|gb|ABI69892.1| translation factor SUA5 [Shewanella frigidimarina NCIMB 400] Length = 188 Score = 167 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 50/181 (27%), Positives = 84/181 (46%), Gaps = 7/181 (3%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 + G IA PTE V+GL D N +AI +L +K+RP LI S + + Sbjct: 8 AVATTIQQGGVIAYPTEAVFGLGCDPDNDSAIEKLLVVKQRPWQKGLILVASSFEQLLPY 67 Query: 74 ASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + L+ L A+ WPGP T V+ + S + L + RV ++L + Sbjct: 68 LDITQLTEQQLQFAQSKWPGPFTFVMPIQSH--VSKLLCGEFDSIAVRVSAHPVVRELCD 125 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 T PL SAN +G+ + + +HI++ +I +I G + + STI++ + + + Sbjct: 126 TLNKPLVSTSANLAGEQPVVDAQHIITD-FSDKIDALILGKLGEQRQPSTIIDARSGQIL 184 Query: 190 R 190 R Sbjct: 185 R 185 >gi|330506808|ref|YP_004383236.1| Sua5/YciO/YrdC/YwlC family protein [Methanosaeta concilii GP-6] gi|328927616|gb|AEB67418.1| Sua5/YciO/YrdC/YwlC family protein [Methanosaeta concilii GP-6] Length = 190 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 56/194 (28%), Positives = 97/194 (50%), Gaps = 6/194 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + A F+ G + PTETVYGL ++ + A+ R++ IKKRP P+ VS + M++ Sbjct: 2 IPSAARFIIGGGVVVYPTETVYGLGANALDEQAVMRVFLIKKRPLSMPISLAVSSLEMLR 61 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETY 131 + A V + + + PGP++++L + + + TA R P + I Sbjct: 62 EVAEVRDDDMDILEDLLPGPVSILL--RKKSIVPDILTAGSSLVGIRFPDHESALRIIDK 119 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 P+ SANR+GQ + + K + S I + L++DGG K ST+++++ +I Sbjct: 120 AGPITSTSANRTGQPAPVSAKEV-SKEIEDRVELVVDGGRCKYCQPSTLLDLENR---KI 175 Query: 192 LRPGGLEIETLKRA 205 +RPG + LK Sbjct: 176 IRPGAGLDKALKAI 189 >gi|322387786|ref|ZP_08061395.1| Sua5/YciO/YrdC family protein [Streptococcus infantis ATCC 700779] gi|321141653|gb|EFX37149.1| Sua5/YciO/YrdC family protein [Streptococcus infantis ATCC 700779] Length = 200 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 63/197 (31%), Positives = 100/197 (50%), Gaps = 8/197 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + K + L+ G + +PTETVYGL + + A+ +Y++K+RP L +V+ + + Sbjct: 2 MEKIKQELEKGGAVVLPTETVYGLFAKALDKKAVDHVYQLKRRPRDKALNLNVAHLDDIL 61 Query: 72 KHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P L F PGPLT++L+ + + ++L T FR+P T +LI Sbjct: 62 NFSKNQPPYLQKLVDSFLPGPLTIILE--ANDKVPYWVNSDLMTVGFRMPSHPITLELIR 119 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 +G PL PSAN SGQ S + + IL +E+ I D G +STI+++ K Sbjct: 120 EFG-PLIGPSANISGQASGASFEEILKD-FGQEVLGIEDDAF-LTGQDSTILDLTACK-A 175 Query: 190 RILRPGGLEIETLKRAI 206 RILR G + E + I Sbjct: 176 RILRQGSITREDILAKI 192 >gi|269957241|ref|YP_003327030.1| Sua5/YciO/YrdC/YwlC family protein [Xylanimonas cellulosilytica DSM 15894] gi|269305922|gb|ACZ31472.1| Sua5/YciO/YrdC/YwlC family protein [Xylanimonas cellulosilytica DSM 15894] Length = 236 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 56/226 (24%), Positives = 97/226 (42%), Gaps = 10/226 (4%) Query: 3 IMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58 + +TD N A+ +A + G + +PT+TVYG+A ++ + A+ + K R Sbjct: 8 VHDVTDPNTWGAAIDEAVNAVRRGALVVLPTDTVYGVAAEAFDAGAVAAIGTAKGRADRT 67 Query: 59 PLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 P V D+ + A V + LA FWPG LTLVL + N Sbjct: 68 PPPVLVPDVRTLDGLATEVSDDARALADAFWPGALTLVLRAQPSLQW--DLGDNRGVVAL 125 Query: 118 RVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 R+P + PLA+ A R G+ + + + + + + +DGG G Sbjct: 126 RMPDHPAALALLRRTGPLAVTGAQRVGETAPLDA-DAARAQLGDAVAVYLDGGPVPGGG- 183 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSP 223 ST+V+ R++RPG +++E L+ + ++ + SP Sbjct: 184 STVVDATV-TPPRVVRPGAIDVEALREVVPAIEPLAAEDDAPATSP 228 >gi|109899136|ref|YP_662391.1| Sua5/YciO/YrdC/YwlC family protein [Pseudoalteromonas atlantica T6c] gi|109701417|gb|ABG41337.1| translation factor SUA5 [Pseudoalteromonas atlantica T6c] Length = 206 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 41/188 (21%), Positives = 81/188 (43%), Gaps = 4/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +++ACE + G + PT++ Y + + +A+ ++ I++ + D+S Sbjct: 14 ARLIKQACELIHNGQVVVYPTDSGYSIGCHMDDKSALEQICRIRQIGKDHNFTLMCRDMS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + ++A VD + + K PGP T +L L +T RVP L Sbjct: 74 ELSEYAQVDNAAFRMIKNNTPGPYTFILKATKEVP-KRLQNPKRRTIGIRVPDNAIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL + I + + + K++ LII GG +T++++ + Sbjct: 133 LEELGEPLMSTTLILPNAIVAESDPDEIRDKLEKQVGLIIHGGFLGE-QPTTVIDL-SDG 190 Query: 188 KVRILRPG 195 + I+R G Sbjct: 191 EPTIIREG 198 >gi|291457346|ref|ZP_06596736.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium breve DSM 20213] gi|291381181|gb|EFE88699.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium breve DSM 20213] Length = 228 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 61/208 (29%), Positives = 94/208 (45%), Gaps = 8/208 (3%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 +TD + L +A + G I IPT+TVYG+A D RN AI R+YE+K+RP L + Sbjct: 14 KVTDES-LAQAARIIHDGGLIVIPTDTVYGVACDPRNAAAIARIYELKRRPRYKALQVLL 72 Query: 65 SDISMVKKHASVDPLSL-HLAKLFWPG---PLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 + + P L L+ F PG P+ + + + + T R+P Sbjct: 73 DSTDQLDELGLELPSPLNRLSAAFLPGAFSPIAVARPDCTLETLADTAEGRPGTQGIRIP 132 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 I PLA SANRSG S V + + +I L +DGG ++ + ST+ Sbjct: 133 NSALCLEILRATGPLAASSANRSGDESAQTVDEAV-EAFGNQIDLYLDGGPTQGHISSTV 191 Query: 181 VNVQ--CEKKVRILRPGGLEIETLKRAI 206 V + ILR G + +++A+ Sbjct: 192 VKADPYARDGIEILREGVIPQSMIRKAL 219 >gi|167855223|ref|ZP_02477993.1| hypothetical protein HPS_06619 [Haemophilus parasuis 29755] gi|167853676|gb|EDS24920.1| hypothetical protein HPS_06619 [Haemophilus parasuis 29755] Length = 206 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 46/189 (24%), Positives = 78/189 (41%), Gaps = 7/189 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A E + G I PT++ Y L + A+ R+ I++ P + SD+S Sbjct: 14 QRLINQAVEIIKNGGVIVYPTDSGYALGCAIGDKHAMDRIVAIRRLPENHNFTLVCSDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A V S L K P P T +L +T D+ KT RVP L Sbjct: 74 ELSTYALVTNQSYRLIKNNVPNPYTFILP--ATKDVPRRLMTKRKTIGIRVPNNVIALAL 131 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL-ESTIVNVQCE 186 I G P+ S + + + + ++ LII GG +G +T++++ + Sbjct: 132 ISALGEPILSCSLMLPNEAITQSDPDEIREHLEHQVDLIIHGGY--LGQSPTTVIDLTQD 189 Query: 187 KKVRILRPG 195 I+R G Sbjct: 190 SP-EIIRVG 197 >gi|321463246|gb|EFX74263.1| hypothetical protein DAPPUDRAFT_215182 [Daphnia pulex] Length = 226 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 69/219 (31%), Positives = 109/219 (49%), Gaps = 13/219 (5%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 + L+ A E L +G IA+PT+T+YG+A S++P A+++LY+IK R P+ VS Sbjct: 12 NSAAILKNAVELLKSGSVIALPTDTLYGIACLSQSPEALKKLYQIKSRDKNKPVAICVSQ 71 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 +S + K V + L PGP+TLV + ++P K R+P F + Sbjct: 72 VSEIAKWGHVT-VDERLLHDLLPGPVTLVFERSPA--LNPELNPGTKLVGIRIPDSWFIR 128 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG----LESTIV 181 +L + PLA+ SAN SG S +V+ L I + + + +GG G L ST+V Sbjct: 129 QLSNSCAEPLALTSANISGSQSTLSVEEFLG--IWEHLGAVFNGGPIPDGSTARLGSTVV 186 Query: 182 NVQCEKKVRILRPGG---LEIETLKRAISVELEYCVDET 217 ++ RI+RPG + +E L++ VE E Sbjct: 187 DLSSPGTYRIIRPGCAQTITVEKLEKYGLVEASEPASEN 225 >gi|154151514|ref|YP_001405132.1| Sua5/YciO/YrdC/YwlC family protein [Candidatus Methanoregula boonei 6A8] gi|154000066|gb|ABS56489.1| Sua5/YciO/YrdC/YwlC family protein [Methanoregula boonei 6A8] Length = 190 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 49/198 (24%), Positives = 88/198 (44%), Gaps = 13/198 (6%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + + +A L I PT+T+YGL D+ + A+ ++YE KKR P+ VSD M Sbjct: 2 DIIERAVSVLTHDGLIVYPTDTLYGLGADAFSDEALEKVYEAKKRDLSKPISIAVSDFEM 61 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + + P + + F PGP+T+++ + + + + R+P ++I Sbjct: 62 LAAVSHTTPFAEEFIERFLPGPVTVIVPVRKM--LPEILSGGTGMIGIRIPAHGVALQII 119 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E + P+ SAN SG + L +DGG G ST+V++ ++ Sbjct: 120 EKFDAPITATSANLSGGKDPQTPEECTVPR-----DLFVDGGRLA-GKPSTVVDLTKKEI 173 Query: 189 VRILRPGGLEIETLKRAI 206 VR G E + ++ + Sbjct: 174 VR----RGAEADAIEAFL 187 >gi|16273118|ref|NP_439354.1| hypothetical protein HI1198 [Haemophilus influenzae Rd KW20] gi|145639282|ref|ZP_01794888.1| hypothetical protein CGSHiII_00989 [Haemophilus influenzae PittII] gi|260581102|ref|ZP_05848923.1| conserved hypothetical protein [Haemophilus influenzae RdAW] gi|319776560|ref|YP_004139048.1| protein, putative translation factor SUA5 [Haemophilus influenzae F3047] gi|329124071|ref|ZP_08252618.1| Sua5/YciO/YrdC/YwlC family protein [Haemophilus aegyptius ATCC 11116] gi|1175684|sp|P45103|Y1198_HAEIN RecName: Full=Uncharacterized protein HI_1198 gi|1574127|gb|AAC22852.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20] gi|145271585|gb|EDK11496.1| hypothetical protein CGSHiII_00989 [Haemophilus influenzae PittII] gi|260092231|gb|EEW76173.1| conserved hypothetical protein [Haemophilus influenzae RdAW] gi|309751159|gb|ADO81143.1| Conserved hypothetical protein [Haemophilus influenzae R2866] gi|317451151|emb|CBY87384.1| conserved protein, putative translation factor SUA5 [Haemophilus influenzae F3047] gi|327467496|gb|EGF12994.1| Sua5/YciO/YrdC/YwlC family protein [Haemophilus aegyptius ATCC 11116] Length = 207 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 52/193 (26%), Positives = 82/193 (42%), Gaps = 7/193 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A E L G I PT++ Y L + A+ R+ I+K P + SD+S Sbjct: 14 ARLINQAVEILQKGGVIVYPTDSGYALGCMMGDKHAMDRIVAIRKLPEGHNFTLVCSDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A V+ + L K PG T +L L T+ KT RVP L Sbjct: 74 ELSTYARVNNTAYRLIKNNTPGRYTFILTATKELP-RRLMTSKRKTIGLRVPDNKIALDL 132 Query: 128 IETYGHPLAIPSANRSGQISIT-NVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQC 185 + G P+ S + T + + + ++ LII GG +G E +T+V++ Sbjct: 133 LSALGEPILSCSLMLPNEEHTTQSDPEEIRDRLEHQVDLIIHGGY--LGQEPTTVVDLTE 190 Query: 186 EKKVRILRPGGLE 198 E V ILR G Sbjct: 191 ESPV-ILREGSGS 202 >gi|145631248|ref|ZP_01787021.1| hypothetical protein CGSHi22421_04153 [Haemophilus influenzae R3021] gi|145637047|ref|ZP_01792710.1| hypothetical protein CGSHiHH_02268 [Haemophilus influenzae PittHH] gi|148828348|ref|YP_001293101.1| hypothetical protein CGSHiGG_09710 [Haemophilus influenzae PittGG] gi|144983175|gb|EDJ90670.1| hypothetical protein CGSHi22421_04153 [Haemophilus influenzae R3021] gi|145269701|gb|EDK09641.1| hypothetical protein CGSHiHH_02268 [Haemophilus influenzae PittHH] gi|148719590|gb|ABR00718.1| hypothetical protein CGSHiGG_09710 [Haemophilus influenzae PittGG] Length = 207 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 52/190 (27%), Positives = 81/190 (42%), Gaps = 7/190 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A E L G I PT++ Y L + A+ R+ I+K P + SD+S + Sbjct: 17 INQAVEILQKGGVIVYPTDSGYALGCMMGDKHAMDRIVAIRKLPEGHNFTLVCSDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 +A V+ + L K PG T +L L T+ KT RVP L+ Sbjct: 77 TYARVNNTAYRLIKNNTPGRYTFILTATKELP-RRLMTSKRKTIGLRVPDNKIALDLLSA 135 Query: 131 YGHPLAIPSANRSGQISIT-NVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKK 188 G P+ S + T + + + ++ LII GG +G E +T+V++ E Sbjct: 136 LGEPILSCSLMLPNEEHTTQSDPEEIRDRLEHQVDLIIHGGY--LGQEPTTVVDLTEESP 193 Query: 189 VRILRPGGLE 198 V ILR G Sbjct: 194 V-ILREGSGS 202 >gi|59711642|ref|YP_204418.1| hypothetical protein VF_1035 [Vibrio fischeri ES114] gi|59479743|gb|AAW85530.1| conserved protein [Vibrio fischeri ES114] Length = 206 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 40/189 (21%), Positives = 72/189 (38%), Gaps = 4/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A + G + PT++ Y L N A+ R+ +I++ + D+S Sbjct: 14 ARLINQAVAIIRDGGVVIYPTDSGYALGCQLENKQALERICQIRRLDDKHNFTLLCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD L K PG T + L KT RVP L Sbjct: 74 ELSIYARVDNSIFRLLKNNTPGAYTFIFKGTKEVP-RRLMNPKRKTIGMRVPDNKIALDL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL + G + + + + LI++GG +T+++ + Sbjct: 133 LEALGEPLMSTTLILPGNEMAESDPEAIRDQLEHAVDLIMNGGYLGE-QPTTVIDFSDDD 191 Query: 188 KVRILRPGG 196 ++I R G Sbjct: 192 -IKIARVGA 199 >gi|325978214|ref|YP_004287930.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325178142|emb|CBZ48186.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 199 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 62/191 (32%), Positives = 91/191 (47%), Gaps = 8/191 (4%) Query: 18 FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77 L G + +PTETVYGL + N A+ +Y++K+RP + +V+D + + Sbjct: 7 ILQNGGAVILPTETVYGLFAQAMNEKAVEHVYQLKRRPKDKAMNLNVADFETILAFSKQQ 66 Query: 78 PLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPL 135 P L L F PGPLT++L + + + L T FR+P T KLI+ G PL Sbjct: 67 PSYLKKLYDAFLPGPLTIILQ--ANDRVPAWINSGLSTIGFRIPNHPQTLKLIKKAG-PL 123 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 PSAN SGQ S K I D ++ G++STI+++ K RILR G Sbjct: 124 IGPSANISGQESGKVFKEIQKQFGGTVTGFADDAALT--GVDSTILDLSG-KTARILRQG 180 Query: 196 GLEIETLKRAI 206 + L + Sbjct: 181 AITQNDLLAVV 191 >gi|119505057|ref|ZP_01627133.1| putative translation factor (SUA5) [marine gamma proteobacterium HTCC2080] gi|119459039|gb|EAW40138.1| putative translation factor (SUA5) [marine gamma proteobacterium HTCC2080] Length = 208 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 47/193 (24%), Positives = 86/193 (44%), Gaps = 4/193 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +R+A E L +G IA PT++ Y L + A+ + I+K + D+S++ Sbjct: 17 VRQAVEILRSGGVIAYPTDSAYALGCRLGDKRALECIRRIRKLDDNHNFTLVCPDLSVLG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 +A VD + L K PGP T +L+ L KT RVP T+ L+ Sbjct: 77 AYAKVDNSAYRLIKNATPGPYTFILEATGEVP-RRLLHPRRKTVGVRVPDNAITQALLAE 135 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 + P+ + G + + +++ ++ L+IDGG + +T++++ + Sbjct: 136 FAEPIMSVTLQLPGDDYPLTDPYDIRTTLEHDVALVIDGGFCGL-EPTTVIDLSAD-SYE 193 Query: 191 ILRPGGLEIETLK 203 +LR G +I L Sbjct: 194 VLREGLGDISRLA 206 >gi|221134961|ref|ZP_03561264.1| Sua5/YciO/YrdC/YwlC family protein [Glaciecola sp. HTCC2999] Length = 206 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 43/192 (22%), Positives = 83/192 (43%), Gaps = 4/192 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +++A E + G + PT++ Y + N +A+ ++ I++ + D+S Sbjct: 14 ARLIKQAVELIKQGEVVVYPTDSGYSIGCQMDNKSALEQVCRIRELDKTHNFTLMCRDVS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD ++ + K PGP T V L KT RVP + Sbjct: 74 ELSDYARVDNVAFRILKNNTPGPYTFVFKATKEVP-KRLQNPKRKTIGIRVPDNPIALAI 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G P+ + G+ + + + + + + LII GG +T++++ E Sbjct: 133 LEELGEPMMSTTLILPGETTAESDPEAIREQLERRVGLIIHGGYLGEH-PTTVIDL-SEG 190 Query: 188 KVRILRPGGLEI 199 +V ILR G +I Sbjct: 191 EVVILREGSGDI 202 >gi|111658251|ref|ZP_01408943.1| hypothetical protein SpneT_02000565 [Streptococcus pneumoniae TIGR4] Length = 200 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 61/197 (30%), Positives = 101/197 (51%), Gaps = 8/197 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + L+ G + +PTETVYGL + + A+ +Y++K+R L +V+ + + Sbjct: 2 MDRIRQELENGGAVVLPTETVYGLFAKALDEKAVDHVYQLKRRRRDKALNLNVASLEDIL 61 Query: 72 KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P L L ++F PGPLT++L+ + + + L T FR+P T LI Sbjct: 62 YFSKNQPTYLQKLVEIFLPGPLTIILE--ANDRVPYWVNSGLATVGFRMPSHPITLDLIR 119 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL PSAN SGQ S IL + + L D ++ G +STI+N+ +K V Sbjct: 120 ETG-PLIGPSANISGQASGVTFNQILEDFDQEVLGLEDDAFLT--GQDSTILNLSGDK-V 175 Query: 190 RILRPGGLEIETLKRAI 206 +ILR G ++ E + + Sbjct: 176 KILRQGAIKREDILARL 192 >gi|71279291|ref|YP_270194.1| Sua5/YciO/YrdC/YwlC family protein [Colwellia psychrerythraea 34H] gi|71145031|gb|AAZ25504.1| Sua5/YciO/YrdC/YwlC family protein [Colwellia psychrerythraea 34H] Length = 206 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 38/185 (20%), Positives = 72/185 (38%), Gaps = 4/185 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A + + G I PT++ Y L + A+ R+ I+ + D+S + Sbjct: 17 MKQAADIIKQGGVIVYPTDSGYALGCHLGDKKALERICRIRDIDKDHNFTLVCQDLSQIS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 ++ VD + L K PG T + L KT RVP + L+ Sbjct: 77 EYTRVDNTAYRLLKSNTPGAYTFIFKGSKEVP-KRLLNPKKKTIGIRVPDNTIAQALLTE 135 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 P+ S GQ + + ++ LI++GG +T+++ + + Sbjct: 136 LAEPIMSTSLIMPGQEMAEYDPEQIRDLLEHQVDLIVNGGYLGEH-PTTVIDFSND-SIE 193 Query: 191 ILRPG 195 I+R G Sbjct: 194 IIRVG 198 >gi|145635047|ref|ZP_01790753.1| putative translation factor, SUA5 [Haemophilus influenzae PittAA] gi|145267655|gb|EDK07653.1| putative translation factor, SUA5 [Haemophilus influenzae PittAA] Length = 207 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 52/195 (26%), Positives = 85/195 (43%), Gaps = 7/195 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A E L G I PT++ Y L + A+ R+ I+K P + SD+S Sbjct: 14 ARLINQAVEILQKGGVIVYPTDSGYALGCMMGDKHAMDRIIAIRKLPEGHNFTLVCSDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A+V+ ++ L K PG T +L L T+ KT RVP L Sbjct: 74 ELSTYATVNNIAYRLIKNNTPGRYTFILTATKELP-RRLMTSKRKTIGLRVPDNKIALDL 132 Query: 128 IETYGHPLAIPSANRSGQISIT-NVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQC 185 + G P+ S + T + + + ++ LII GG +G E +T+V++ Sbjct: 133 LSALGEPILSCSLMLPNEEHTTQSDPEEIRDRLEHQVDLIIHGGY--LGQEPTTVVDLTE 190 Query: 186 EKKVRILRPGGLEIE 200 E V ILR G + Sbjct: 191 ELPV-ILREGSGSTD 204 >gi|297793617|ref|XP_002864693.1| hypothetical protein ARALYDRAFT_358267 [Arabidopsis lyrata subsp. lyrata] gi|297310528|gb|EFH40952.1| hypothetical protein ARALYDRAFT_358267 [Arabidopsis lyrata subsp. lyrata] Length = 284 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 63/192 (32%), Positives = 101/192 (52%), Gaps = 4/192 (2%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 ++A E + + IA+PT+T+YG A D+ + A+ R+YEIK R +PL V D+ +K+ Sbjct: 77 QEAIEAIKSEKVIAVPTDTLYGFACDACSLEAVNRIYEIKGRKLTSPLAICVGDVLDIKR 136 Query: 73 HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETY 131 A+ + L L PGP+T+VL ++ + + T RVP C F +++ Sbjct: 137 VATTNHLPHGLLDSLLPGPVTIVLQRGESSILEKSLNPGIGTIGVRVPDCEFIREVSRGS 196 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKKVR 190 G LA+ SAN SG S VK ++ + + DGG+ G STIV++ K + Sbjct: 197 GSVLALTSANLSGDRSSVCVKD--FENLWQHCAYVYDGGLLPSGRAGSTIVDLTKAGKYK 254 Query: 191 ILRPGGLEIETL 202 I+RPG + T+ Sbjct: 255 IIRPGSAKQATV 266 >gi|198458321|ref|XP_001360991.2| GA17233 [Drosophila pseudoobscura pseudoobscura] gi|198136301|gb|EAL25567.2| GA17233 [Drosophila pseudoobscura pseudoobscura] Length = 335 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 66/219 (30%), Positives = 104/219 (47%), Gaps = 9/219 (4%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 + + D AL+ A + L G IA+PT+TVYGLA D+ N AI+R+YEIK R P+ Sbjct: 115 VCQVEDRAALKVARQCLLGGQVIALPTDTVYGLACDANNEHAIQRMYEIKGRDEHKPVAI 174 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC- 121 V++I ++++ LS L PGPLT+V++ L+ K R+P Sbjct: 175 CVNNIEALRRYGQAAHLSDELLTRLLPGPLTIVIERTPELSNRFLNPTTSK-IGIRIPDF 233 Query: 122 GFTKKLIETYG-HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI----SKIGL 176 F + L + PLA+ SANRS S V S+ ++ + D G + L Sbjct: 234 QFIRALCSVWHEQPLALTSANRSSAPSSLQVTE--FRSLWPQLGAVFDAGQIGLTEERRL 291 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD 215 ST++++ I+R G +TL+ ++ D Sbjct: 292 ASTVIDLATPGYYEIVRAGVALKQTLRLVEEYGIKPRKD 330 >gi|86158113|ref|YP_464898.1| translation factor SUA5 [Anaeromyxobacter dehalogenans 2CP-C] gi|85774624|gb|ABC81461.1| translation factor SUA5 [Anaeromyxobacter dehalogenans 2CP-C] Length = 231 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 50/197 (25%), Positives = 93/197 (47%), Gaps = 6/197 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A L +G IA PT+T YG+ D + AI R+Y++K+ P + L D++ Sbjct: 40 PRVIERAVSALSSGGVIAYPTDTFYGIGCDLFDKRAIERIYQLKQLPRTHELAFICQDLA 99 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 + ++A VD + + + PGP T +L +T + L KT R+P +L Sbjct: 100 EISRYAIVDNAAYRVLRRKVPGPFTFILP--ATRLVPELVLRRQKTVGIRIPDSPIALEL 157 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + GHPL SA R + + + + + + LI+D G + S+++++ + Sbjct: 158 VRRLGHPLISTSAARPDGDVLIDARD-IKEELGHGLDLILDAGF-RPAEPSSVIDLSGPE 215 Query: 188 KVRILRPGGLEIETLKR 204 V ++R G ++ L Sbjct: 216 PV-VVRVGKGDVSDLME 231 >gi|329894513|ref|ZP_08270327.1| Sua5/YciO/YrdC/YwlC family protein [gamma proteobacterium IMCC3088] gi|328923038|gb|EGG30363.1| Sua5/YciO/YrdC/YwlC family protein [gamma proteobacterium IMCC3088] Length = 207 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 42/190 (22%), Positives = 79/190 (41%), Gaps = 5/190 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +++A + + AG + PT++ Y L + A+ + I+K + D+S Sbjct: 14 ARLIKQAADIIRAGGIVVYPTDSAYALGCHIGDKRALDTIRRIRKLDDKHNFTLVCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + A VD + L K PGP T +L L A KT RVP + L Sbjct: 74 ELANFARVDNAAYRLLKAATPGPYTFILKATPEVP-RRLLHAKRKTIGLRVPENNIAQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCE 186 + P+ + + + + ++ L+IDGG GLE +T++++ + Sbjct: 133 LAELNEPMMSVTLIMPDDEDPLIDPYEIRDLLEHDVDLVIDGGYC--GLEMTTVIDLADD 190 Query: 187 KKVRILRPGG 196 + V + + G Sbjct: 191 EPVLVRQGKG 200 >gi|52548883|gb|AAU82732.1| conserved hypothetical protein [uncultured archaeon GZfos19C7] Length = 224 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 52/197 (26%), Positives = 90/197 (45%), Gaps = 11/197 (5%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ A + G + PTETVYGL D+ + A+R +Y+IK+R P+ VS Sbjct: 6 EDQIKTATAIIKNGGMVVYPTETVYGLGADAFSEAAVRNVYKIKRRDLSRPISIAVSSFE 65 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128 M+ + A +D + PGP+T++L + + TA + R P I Sbjct: 66 MLHEVADIDSECFEIIAELLPGPVTILL--RKKDVVPAILTAASEVVGVRFPDNEIATRI 123 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICK--EIPLIIDGGISKIGLESTIVNVQC- 185 P+ SAN SG+ T ++ + K + +II+GG K + ST+V++ Sbjct: 124 IKETGPITATSANVSGRNPPTCIEEVEVELKLKVELLGIIINGGKCKYSMPSTVVDMSKV 183 Query: 186 ------EKKVRILRPGG 196 + +++I R G Sbjct: 184 GATANEKGEIKIKRKGA 200 >gi|15900893|ref|NP_345497.1| Sua5/YciO/YrdC family protein [Streptococcus pneumoniae TIGR4] gi|14972495|gb|AAK75137.1| Sua5/YciO/YrdC family protein [Streptococcus pneumoniae TIGR4] Length = 199 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 61/197 (30%), Positives = 101/197 (51%), Gaps = 8/197 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + L+ G + +PTETVYGL + + A+ +Y++K+R L +V+ + + Sbjct: 1 MDRIRQELENGGAVVLPTETVYGLFAKALDEKAVDHVYQLKRRRRDKALNLNVASLEDIL 60 Query: 72 KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P L L ++F PGPLT++L+ + + + L T FR+P T LI Sbjct: 61 YFSKNQPTYLQKLVEIFLPGPLTIILE--ANDRVPYWVNSGLATVGFRMPSHPITLDLIR 118 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL PSAN SGQ S IL + + L D ++ G +STI+N+ +K V Sbjct: 119 ETG-PLIGPSANISGQASGVTFNQILEDFDQEVLGLEDDAFLT--GQDSTILNLSGDK-V 174 Query: 190 RILRPGGLEIETLKRAI 206 +ILR G ++ E + + Sbjct: 175 KILRQGAIKREDILARL 191 >gi|116750183|ref|YP_846870.1| Sua5/YciO/YrdC/YwlC family protein [Syntrophobacter fumaroxidans MPOB] gi|116699247|gb|ABK18435.1| translation factor SUA5 [Syntrophobacter fumaroxidans MPOB] Length = 225 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 56/204 (27%), Positives = 93/204 (45%), Gaps = 6/204 (2%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 +++ + A L G + PTET YGL + +P + ++ IKKR L S Sbjct: 26 SETEVVEAATSLLTRGGIVVYPTETFYGLGGNPLSPATVAAIFAIKKREREKALPLIASG 85 Query: 67 ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 I V++ L+ LA FWPGPLTL+L + + P A+ RV Sbjct: 86 IQAVREWVEEFPALAERLAAAFWPGPLTLIL--RAVHRLPPQVHASTGKIAIRVSSHPVA 143 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + L + G + SAN +GQ + + I + +++ +ID G L STIV+V Sbjct: 144 RALAASLGGLIVSTSANFTGQRACRTLAEIPIE-LVRQVDGVIDAGRLPGSLPSTIVDVT 202 Query: 185 CEKKVRILRPGGLEIETLKRAISV 208 + ++R G + ++RA ++ Sbjct: 203 GGSPL-LVREGCVPFMEIERAAAL 225 >gi|116671163|ref|YP_832096.1| translation factor SUA5 [Arthrobacter sp. FB24] gi|116611272|gb|ABK03996.1| translation factor SUA5 [Arthrobacter sp. FB24] Length = 245 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 55/219 (25%), Positives = 97/219 (44%), Gaps = 11/219 (5%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + L A + + PT+TVYG+ D+ +P A+ L K R P + ++ Sbjct: 14 AEGLENAQRAIRQHKCVVFPTDTVYGIGADAFSPQAVTLLLASKGRSRKMPPPVLIPRLN 73 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 + A V + LA+ FWPG LT++ + D T T R+P + Sbjct: 74 ALDGLATDVPAEARKLAEAFWPGGLTMIFHAQPSLDWDLGETKG--TVALRMPADDVAQD 131 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG------LESTIV 181 + T PLA+ SANR+GQ + ++ + + + + ++GG+ G L STIV Sbjct: 132 LLTLTGPLAVSSANRTGQPAARTAAEAMT-QLAESVEVYLEGGLRPDGDADADALPSTIV 190 Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTP 220 + +R++R G + +E L+ + L+ + P Sbjct: 191 DATAL-PLRVVRQGAISVERLREVVPGLLDIDGNAADVP 228 >gi|148978490|ref|ZP_01814964.1| Sua5/YciO/YrdC family protein [Vibrionales bacterium SWAT-3] gi|145962397|gb|EDK27677.1| Sua5/YciO/YrdC family protein [Vibrionales bacterium SWAT-3] Length = 185 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 43/185 (23%), Positives = 79/185 (42%), Gaps = 7/185 (3%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + + + L G IA PTE V+G+ D NP AI++L E+K+RP LI + Sbjct: 2 DNFQHTLQALHQGEVIAYPTEGVFGVGCDPDNPHAIKKLLELKQRPVEKGLILIAASYEQ 61 Query: 70 VKKHASVDPLSLHLA---KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + + L+ K WPGP+T ++ + + + + RV + Sbjct: 62 LLPYIDESQLTDEQLATVKATWPGPVTWIMPTSAK--VTDWVSGQFDSLAVRVTDHPLVQ 119 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 ++ +G PL SAN +G+ + + + + + I++G S I + + Sbjct: 120 RMCNEFGKPLTSTSANLTGEPPCMTTEEV-QQQLGQHLVAILEGKTGGRDKPSEIRDAKT 178 Query: 186 EKKVR 190 K +R Sbjct: 179 SKILR 183 >gi|218710991|ref|YP_002418612.1| Sua5/YciO/YrdC family protein [Vibrio splendidus LGP32] gi|218324010|emb|CAV20372.1| Sua5/YciO/YrdC family protein [Vibrio splendidus LGP32] Length = 189 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 42/185 (22%), Positives = 80/185 (43%), Gaps = 7/185 (3%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + + + L G IA PTE V+G+ D NP AI++L ++K+RP LI + Sbjct: 6 DNFQHTLQALQQGEVIAYPTEGVFGVGCDPDNPQAIKKLLDLKQRPIEKGLILIAASYEQ 65 Query: 70 VKKHASVDPLSLHLA---KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + + L+ K WPGP+T ++ ++ + + + RV + Sbjct: 66 LLPYIDESQLTEAQLATVKATWPGPVTWIMPT--SSKVTDWVSGQFDSIAVRVTDHPLVQ 123 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 ++ +G PL SAN +G+ + + + + + I++G S I + + Sbjct: 124 RMCNEFGKPLTSTSANLTGEPPCMTTEEV-QQQLGQHLVAILEGQTGGREKPSEIRDAKT 182 Query: 186 EKKVR 190 K +R Sbjct: 183 SKILR 187 >gi|45357749|ref|NP_987306.1| hypothetical protein MMP0186 [Methanococcus maripaludis S2] gi|45047309|emb|CAF29742.1| conserved hypothetical protein [Methanococcus maripaludis S2] Length = 206 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 57/213 (26%), Positives = 107/213 (50%), Gaps = 14/213 (6%) Query: 1 MQIMSITDSN------ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR 54 M+ I++SN + A + + G I T+T+YGL+ ++ + AI ++Y IK+R Sbjct: 1 MKTFEISESNLKNCEKEIETAKKMILGGKIILCGTDTLYGLSTNALDKNAIEKIYSIKER 60 Query: 55 PAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT 114 P+ + + ++ + VD + + + F PGP+T++L DI P Sbjct: 61 DPNKPISISLGEKKQIENYVYVDETAKKIIEKFMPGPITVIL---KKKDIIPDILGKDD- 116 Query: 115 ACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174 R+P + I PL SAN SG+ + T+++ + I +++ LI+D G K Sbjct: 117 VGVRIPDNDVIRKI--AVVPLTTTSANISGKTAPTSLEEV-DQIIKEKVDLIVDTGPCKY 173 Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAIS 207 ++STIV V + K+ ++R G + E + +A++ Sbjct: 174 KVQSTIVKVI-DGKIELIREGKIPFEEILKAVN 205 >gi|195119554|ref|XP_002004296.1| GI19851 [Drosophila mojavensis] gi|193909364|gb|EDW08231.1| GI19851 [Drosophila mojavensis] Length = 228 Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 103/206 (50%), Gaps = 9/206 (4%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 I S NAL+ A + L G IA+PT+TVYGLA D+ N AI+RLYEIK R P+ Sbjct: 11 ICSAESLNALKLAEQCLQLGKVIALPTDTVYGLACDANNEQAIQRLYEIKGRDEHKPVAI 70 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC- 121 V++I+ ++++ LS L PGPLT++++ L+ + K R+P Sbjct: 71 CVNNITALRRYGQASHLSDELLTRLLPGPLTIIVEHTPHLSNRYLNPSTSK-IGIRIPDF 129 Query: 122 GFTKKLIETYG-HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI----SKIGL 176 F + L + PLA+ SANRS + S + ++ ++ I D G + L Sbjct: 130 QFIRDLCARWHEQPLALTSANRSSEPSSLEIIE--FQALWPQLGAIFDAGRIGQTEERRL 187 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETL 202 ST++++ I+R G +TL Sbjct: 188 ASTVIDLANPGCYEIVRAGVALKQTL 213 >gi|296104990|ref|YP_003615136.1| putative ribosome maturation factor [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059449|gb|ADF64187.1| putative ribosome maturation factor [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 200 Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 48/184 (26%), Positives = 75/184 (40%), Gaps = 8/184 (4%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 ++ A E L IA PTE V+G+ D + TA+ RL +K+RP LI ++ + Sbjct: 19 SIAHAVEVLKNEEVIAYPTEAVFGVGCDPDSETAVNRLLTLKQRPVEKGLILIAANYEQL 78 Query: 71 KKHASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 K + P WPGP+T V TT T + RV + Sbjct: 79 KPYIDDSMLTPAQRDTIFSAWPGPVTFVFPAQPTT--PRWLTGRFDSLAVRVTDHPLVVE 136 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L +G PL SAN +GQ + + +L + + P+ + G S I + Sbjct: 137 LCLAFGKPLVSTSANLTGQPPCRSTEEVL-AQFGNDFPVAV-GETGGRLNPSEIRDALTG 194 Query: 187 KKVR 190 ++ R Sbjct: 195 ERFR 198 >gi|295086691|emb|CBK68214.1| translation factor SUA5 [Bacteroides xylanisolvens XB1A] Length = 204 Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 49/201 (24%), Positives = 82/201 (40%), Gaps = 9/201 (4%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICH 63 + L++ + L+ G I PT+T+Y + AI R+ IK+ P N L Sbjct: 8 KNNNPQDLQRIIDILNDGGLIIYPTDTMYAIGCHGLKERAIERICRIKEIDPRKNNLSII 67 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-G 122 D+S + ++A VD L K PGP T +L+ T+ P N K R+P Sbjct: 68 CYDLSSISEYAKVDNNVFKLMKHNLPGPFTFILN---GTNRLPKIFRNRKEVGIRMPDNN 124 Query: 123 FTKKLIETYGHPLAIPSANRSGQIS--ITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 +++ P+ + ++ + L+IDGGI I ST+ Sbjct: 125 IIREIARLLDAPIMTTTLPYEEHEDLEYMTDPELIDEKFGDIVDLVIDGGIGGI-EPSTV 183 Query: 181 VNVQCEKKVRILRPGGLEIET 201 V + ++ I+R G +E Sbjct: 184 VKCT-DNELEIVRQGKGWLEE 203 >gi|195154030|ref|XP_002017926.1| GL17434 [Drosophila persimilis] gi|194113722|gb|EDW35765.1| GL17434 [Drosophila persimilis] Length = 335 Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 66/219 (30%), Positives = 104/219 (47%), Gaps = 9/219 (4%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 + + D AL+ A + L G IA+PT+TVYGLA D+ N AI+R+YEIK R P+ Sbjct: 115 VCQVEDRAALKVARQCLLGGQVIALPTDTVYGLACDANNEHAIQRMYEIKGRDEHKPVAI 174 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC- 121 V++I ++++ LS L PGPLT+V++ L+ K R+P Sbjct: 175 CVNNIEALRRYGQAAHLSDELLTRLLPGPLTIVIERTHELSNRFLNPTTSK-IGIRIPDF 233 Query: 122 GFTKKLIETYG-HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI----SKIGL 176 F + L + PLA+ SANRS S V S+ ++ + D G + L Sbjct: 234 QFIRALCSVWHEQPLALTSANRSSAPSSLQVTE--FHSLWPQLGAVFDAGQIGLTEERRL 291 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD 215 ST++++ I+R G +TL+ ++ D Sbjct: 292 ASTVIDLATPGYYEIVRAGVALKQTLRLVEEYGIKPRKD 330 >gi|160873162|ref|YP_001552478.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica OS195] gi|212288221|sp|A9KUA7|RIMN_SHEB9 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|160858684|gb|ABX47218.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica OS195] gi|315265387|gb|ADT92240.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica OS678] Length = 188 Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 50/178 (28%), Positives = 76/178 (42%), Gaps = 7/178 (3%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 + + G IA PTE VYGL D N TAI +L +K+RP LI SD + + Sbjct: 11 DIILQGGVIAYPTEAVYGLGCDPDNDTAILKLLAVKQRPWQKGLILVASDFQQLLAYVDE 70 Query: 77 DPL-SLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYG 132 L + L F WPGP T V+ + + + + RV + L Sbjct: 71 SQLTAEQLEFAFSKWPGPFTFVMPIKA--QVSKYLCGEFDSIAVRVSAHAGVQALCRALN 128 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 PL SAN +G+ IL + +I ++ G + + STI++ + K +R Sbjct: 129 KPLVSTSANLAGEDPALTAAEIL-ADFTGKIDALVLGELGEQRQPSTIIDARSGKILR 185 >gi|306831309|ref|ZP_07464469.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304426545|gb|EFM29657.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 199 Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats. Identities = 62/191 (32%), Positives = 91/191 (47%), Gaps = 8/191 (4%) Query: 18 FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77 L G + +PTETVYGL + N A+ +Y++K+RP + +V+D + + Sbjct: 7 ILQNGGAVILPTETVYGLFAQAMNENAVEHVYQLKRRPKDKAMNLNVADFETILAFSKQQ 66 Query: 78 PLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPL 135 P L L F PGPLT++L + + + L T FR+P T KLI+ G PL Sbjct: 67 PSYLKKLYDAFLPGPLTIILQ--ANDRVPAWINSGLSTIGFRIPNHSQTLKLIKKAG-PL 123 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 PSAN SGQ S K I D ++ G++STI+++ K RILR G Sbjct: 124 IGPSANISGQESGKVFKEIQKQFGGTVTGFADDAALT--GVDSTILDLSG-KTARILRQG 180 Query: 196 GLEIETLKRAI 206 + L + Sbjct: 181 AITQNDLLAVV 191 >gi|224826312|ref|ZP_03699414.1| Sua5/YciO/YrdC/YwlC family protein [Lutiella nitroferrum 2002] gi|224601413|gb|EEG07594.1| Sua5/YciO/YrdC/YwlC family protein [Lutiella nitroferrum 2002] Length = 206 Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats. Identities = 42/188 (22%), Positives = 78/188 (41%), Gaps = 5/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +R+A + L AG I PT++ Y L + A+ R+ +I++ + L +D+S Sbjct: 14 ARLIREAVKILRAGGVIVYPTDSCYALGCLLGDKAAMERILDIRQLDLKHHLTLVCADLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD K PG T +L L T RVP L Sbjct: 74 ELSNYARVDNSQFRQLKAATPGSYTFILQASKEVPRRTL-HPKRATIGLRVPEHPVALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G P+ + + G + + + +++ L+IDGG +T++++ Sbjct: 133 LAELGEPILSCTLSLPGDSEALTDPYEIRERMERQVDLVIDGGWCGT-EPTTVIDLTDG- 190 Query: 188 KVRILRPG 195 V ++R G Sbjct: 191 -VELVRRG 197 >gi|119487019|ref|ZP_01620891.1| Sua5/YciO/YrdC/YwlC-like protein [Lyngbya sp. PCC 8106] gi|119455948|gb|EAW37082.1| Sua5/YciO/YrdC/YwlC-like protein [Lyngbya sp. PCC 8106] Length = 248 Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats. Identities = 51/205 (24%), Positives = 87/205 (42%), Gaps = 14/205 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + K L +G + PT+TVY + D +A+ R+ +IK+ PL S +S Sbjct: 42 ERTITKVIADLRSGAVMLYPTDTVYAIGCDLTVKSAVERVRQIKQLSNDKPLTFLCSSLS 101 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPC-GFTKK 126 + +A+V + + K PG T +L +T + L + KT RVP F Sbjct: 102 NISDYANVSNQAYRIIKRLIPGSYTFLLP--ATKLVPRLVMSPKRKTTGIRVPDNHFCLA 159 Query: 127 LIETYGHPLAIPSANRSGQIS---ITNVK-------HILSSSICKEIPLIIDGGISKIGL 176 LIET G+P+ SA+ + + V L + K + +I+D G Sbjct: 160 LIETLGNPIISTSAHITNEEEGQAPLAVPRTGNMGKAELFDCLEKLVDIIVDDGSDPGYQ 219 Query: 177 ESTIVNVQCEKKVRILRPGGLEIET 201 STI+++ ++ + + G E Sbjct: 220 VSTILDLTGDEPILVREGKGWEAAA 244 >gi|167581361|ref|ZP_02374235.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia thailandensis TXDOH] Length = 209 Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats. Identities = 51/193 (26%), Positives = 85/193 (44%), Gaps = 4/193 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E + G IA+PT++ Y LA + A+ R+ I+ L V D+S Sbjct: 14 PRLIKQAAEIVRGGGVIALPTDSSYALACHLDDKDAVERVRRIRGLDEKQHLSLLVRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + A VD L K PGP +L LS + KT RVP T L Sbjct: 74 ELATFAMVDNRQYRLIKSVTPGPYVFILQATKEVP-RRLSHPSRKTIGLRVPAHAITLAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E+ G PL + N + + + K++ L+IDGG ST++++ ++ Sbjct: 133 LESLGQPLLGTTLILPPDDDPLNDPEEIRARLEKQVDLVIDGGACPR-EPSTVIDLTGDE 191 Query: 188 KVRILRPGGLEIE 200 +++R G +E Sbjct: 192 P-QLVRAGRGPLE 203 >gi|329904391|ref|ZP_08273785.1| hypothetical protein IMCC9480_2045 [Oxalobacteraceae bacterium IMCC9480] gi|327547995|gb|EGF32734.1| hypothetical protein IMCC9480_2045 [Oxalobacteraceae bacterium IMCC9480] Length = 207 Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats. Identities = 47/189 (24%), Positives = 80/189 (42%), Gaps = 3/189 (1%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A E + G +A+PT++ Y L + A+ RL ++ + L D++ Sbjct: 14 QRLINQAAEIIHRGGIVAMPTDSSYALVCHLDDKDAVTRLRRLRGVDDKHLLTLLCRDLA 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD L K PG T++L+ +S + KT RVP L Sbjct: 74 EIALYAKVDNKQYRLLKAATPGSYTMILEATKEVP-RRISHPSRKTIGLRVPENKIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL + G + I K++ LIIDGG + +T+V++ ++ Sbjct: 133 LEQLGQPLLGTTLILPGDEHPLTDAESVRERIEKQVDLIIDGGACSL-EPTTVVDLSGDE 191 Query: 188 KVRILRPGG 196 V I G Sbjct: 192 PVLIRAGRG 200 >gi|15827567|ref|NP_301830.1| hypothetical protein ML1136 [Mycobacterium leprae TN] gi|221230044|ref|YP_002503460.1| hypothetical protein MLBr_01136 [Mycobacterium leprae Br4923] gi|1176863|sp|P45831|Y1136_MYCLE RecName: Full=Uncharacterized protein ML1136 gi|699330|gb|AAA63091.1| sua5 [Mycobacterium leprae] gi|13093117|emb|CAC31517.1| conserved hypothetical protein [Mycobacterium leprae] gi|219933151|emb|CAR71231.1| conserved hypothetical protein [Mycobacterium leprae Br4923] Length = 220 Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats. Identities = 52/212 (24%), Positives = 90/212 (42%), Gaps = 9/212 (4%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 ++ D + + A L G + +PT+TVYG+ D+ + A+ L K R Sbjct: 6 EVFDCADPDQRARGIASAVAALKGGRLVVMPTDTVYGIGADAFDRAAVAALLSAKGRGRD 65 Query: 58 NPLICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 P+ V ++ P + L + FWPG L+LV+ + ++ T Sbjct: 66 MPVGVLVGSWHTIEGLVYTMPDGARELIRAFWPGALSLVVVHAPS--LNWDLGDAHGTVM 123 Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P + P+A+ SAN SGQ + +V + + + + +D G S Sbjct: 124 LRMPLHSVAIELLCEVGPMAVSSANVSGQPAAVDVDGA-RGQLGELVGVYLDAGPSAQQA 182 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISV 208 STIV++ E RILR G + + + + V Sbjct: 183 ASTIVDLT-EATPRILRAGPVSVARIAEVLGV 213 >gi|322411680|gb|EFY02588.1| Sua5/YciO/YrdC family protein [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 196 Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats. Identities = 55/192 (28%), Positives = 92/192 (47%), Gaps = 6/192 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + +++G + +PTETVYGL + + A+ +Y++K+RP + +V+D + Sbjct: 1 MERLASIIESGGALVLPTETVYGLFAKALDEKAVNAVYDLKQRPRDKAMNLNVADFDSIL 60 Query: 72 KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130 + P L L + F PGPLT++L + + + L T FR+P + Sbjct: 61 AFSKEQPTYLEKLYQAFLPGPLTVILK--ANDRVPHWINSGLATVGFRLPSHPITAALIQ 118 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 PL PSAN SG+ S I+ + I D ++ G +STI+++ E V Sbjct: 119 KTGPLIGPSANLSGKPSGKVFNQIIQDFDFQVIGYADDPFLT--GKDSTILDLSGESPV- 175 Query: 191 ILRPGGLEIETL 202 ILR G + E L Sbjct: 176 ILRQGAITKEEL 187 >gi|220935185|ref|YP_002514084.1| SUA5/YciO/YrdC/YwlC family protein [Thioalkalivibrio sp. HL-EbGR7] gi|219996495|gb|ACL73097.1| SUA5/YciO/YrdC/YwlC family protein [Thioalkalivibrio sp. HL-EbGR7] Length = 205 Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats. Identities = 45/188 (23%), Positives = 78/188 (41%), Gaps = 4/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +R+A + + G I PT++ Y L N T + R+ I++ + D+S Sbjct: 14 ARLIRQAVDVIRDGGVIVYPTDSCYALGCGIGNKTGMERIRRIRQLDDNHHFTLVCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD + L K PGP T +L L A KT RVP T+ L Sbjct: 74 EIATYAKVDNTAYRLLKNLTPGPYTFLLKATHEVP-RRLQHAKRKTIGLRVPDHAITQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + G + + + + + LI+ G + +T+V++ E Sbjct: 133 LAELGEPLMSTTLQLPGDHLPLSDPYDIEERLSAHVDLILLAGSCGV-EPTTVVDLVGEV 191 Query: 188 KVRILRPG 195 ++R G Sbjct: 192 P-EVVRQG 198 >gi|237714230|ref|ZP_04544711.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262408394|ref|ZP_06084941.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294647539|ref|ZP_06725118.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides ovatus SD CC 2a] gi|294808576|ref|ZP_06767320.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides xylanisolvens SD CC 1b] gi|298482087|ref|ZP_07000275.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. D22] gi|229445722|gb|EEO51513.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262353946|gb|EEZ03039.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292637107|gb|EFF55546.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides ovatus SD CC 2a] gi|294444219|gb|EFG12942.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides xylanisolvens SD CC 1b] gi|298271644|gb|EFI13217.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. D22] Length = 204 Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats. Identities = 49/201 (24%), Positives = 83/201 (41%), Gaps = 9/201 (4%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICH 63 + L++ + L+ G I PT+T+Y + AI R+ IK+ P N L Sbjct: 8 KNNNPQDLQRIIDILNDGGLIIYPTDTMYAIGCHGLKERAIERICRIKEIDPRKNNLSII 67 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-G 122 D+S + ++A VD L K PGP T +L+ T+ P N K R+P Sbjct: 68 CYDLSSISEYAKVDNNVFKLMKHNLPGPFTFILN---GTNRLPKIFRNRKEVGIRMPDNN 124 Query: 123 FTKKLIETYGHPLAIPSANRSGQIS--ITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 ++++ P+ + ++ + L+IDGGI I ST+ Sbjct: 125 ISREIARLLDAPIMTTTLPYEEHEDLEYMTDPELIDEKFGDIVDLVIDGGIGGI-EPSTV 183 Query: 181 VNVQCEKKVRILRPGGLEIET 201 V + ++ I+R G +E Sbjct: 184 VKCT-DNELEIVRQGKGWLEE 203 >gi|206576981|ref|YP_002236315.1| Sua5/YciO/YrdC/YwlC family protein [Klebsiella pneumoniae 342] gi|288933304|ref|YP_003437363.1| SUA5/yciO/yrdC domain protein [Klebsiella variicola At-22] gi|290512106|ref|ZP_06551474.1| ribosome maturation factor rimN [Klebsiella sp. 1_1_55] gi|206566039|gb|ACI07815.1| Sua5/YciO/YrdC/YwlC family protein [Klebsiella pneumoniae 342] gi|288888033|gb|ADC56351.1| SUA5/yciO/yrdC domain protein [Klebsiella variicola At-22] gi|289775896|gb|EFD83896.1| ribosome maturation factor rimN [Klebsiella sp. 1_1_55] Length = 190 Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats. Identities = 50/187 (26%), Positives = 69/187 (36%), Gaps = 8/187 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 S + A L IA PTE V+G+ D + TA+ RL E+K+RP LI + Sbjct: 6 PSETVAHAVAVLKNEHVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAASF 65 Query: 68 SMVKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 +K + WPGP+T V T T + RV Sbjct: 66 EQLKPYVDDSRLSDSQRDAIFSCWPGPVTFVFPARPET--PRWLTGRFDSLAVRVTNHPL 123 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 +L E YG PL SAN +GQ + + P ++DG S I + Sbjct: 124 VIELCEAYGKPLVSTSANLTGQPPCRTTAEV-HAQFGDSFP-VVDGATGGRQNPSEIRDA 181 Query: 184 QCEKKVR 190 K R Sbjct: 182 LTGKLFR 188 >gi|126660837|ref|ZP_01731931.1| hypothetical protein CY0110_27268 [Cyanothece sp. CCY0110] gi|126617888|gb|EAZ88663.1| hypothetical protein CY0110_27268 [Cyanothece sp. CCY0110] Length = 217 Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats. Identities = 51/208 (24%), Positives = 96/208 (46%), Gaps = 10/208 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + C+ L G + PT+TVY + D + +A++R+ ++K+ PL S +S Sbjct: 14 PRRIDEICDSLRKGAIMLYPTDTVYAIGCDLNSKSAVQRVRQLKQLSNDKPLTFLCSSLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKK 126 + +A V + + K PGP T +L +T + L + KT RVP + Sbjct: 74 NIADYAGVTDEAYRIMKRVIPGPYTFLLP--ATKAVPKLVMSPKRKTTGIRVPDHPICQA 131 Query: 127 LIETYGHPLAIPSANRSGQ----ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 ++ +P+ SA+ + +I K L + ++ +IID + STI++ Sbjct: 132 ILTELNNPIISTSAHLPDEEGEFPTIGLEKARLFDILESQVDMIIDNSLEPGFDVSTILD 191 Query: 183 VQCEKKVRILRPGGLEIETLKRAISVEL 210 + + I+R G L E L+ ++VE+ Sbjct: 192 MTSD-PPSIIRQG-LGWEALQNWVTVEV 217 >gi|306833421|ref|ZP_07466548.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus bovis ATCC 700338] gi|304424191|gb|EFM27330.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus bovis ATCC 700338] Length = 199 Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats. Identities = 62/191 (32%), Positives = 91/191 (47%), Gaps = 8/191 (4%) Query: 18 FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77 L G + +PTETVYGL + N A+ +Y++K+RP + +V+D + + Sbjct: 7 ILQNGGAVILPTETVYGLFAQAMNENAVEHVYQLKRRPKDKAMNLNVADFETILAFSKQQ 66 Query: 78 PLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPL 135 P L L F PGPLT++L + + + L T FR+P T KLI+ G PL Sbjct: 67 PSYLKKLYDAFLPGPLTIILQ--ANDRVPAWINSGLSTIGFRIPNHPQTLKLIKKAG-PL 123 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 PSAN SGQ S K I D ++ G++STI+++ K RILR G Sbjct: 124 IGPSANISGQESGKVFKEIQKQFGGTVTGFADDAALT--GVDSTILDLSG-KTARILRQG 180 Query: 196 GLEIETLKRAI 206 + L + Sbjct: 181 AITQNDLLTVV 191 >gi|297243818|ref|ZP_06927748.1| Sua5/YciO/YrdC family translation factor [Gardnerella vaginalis AMD] gi|296888239|gb|EFH26981.1| Sua5/YciO/YrdC family translation factor [Gardnerella vaginalis AMD] Length = 228 Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats. Identities = 62/228 (27%), Positives = 102/228 (44%), Gaps = 22/228 (9%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M + + +L+ A + ++ G I +PT+TVYG+A D N A+ ++YE+K+RP L Sbjct: 1 MSKICNINEESLQMAAQIINEGGVIVVPTDTVYGVACDPFNEAAVAKIYELKRRPRTKAL 60 Query: 61 ICHVSDISMVKKHASVDPLSLHLA-KLFWPGPLTLVLDLLSTTDIHPLST---------- 109 +S + ++K P L + K F PG + + + L+T Sbjct: 61 QILMSGVEDLEKLGLYLPSPLDILGKKFLPGGYSPIARAKKDSVASKLATLCKTNETDEK 120 Query: 110 --------ANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICK 161 A T RVP I PLA SANRSG S +V+ + Sbjct: 121 TQETETTQAIESTQGVRVPDCPELMQILRVTGPLAASSANRSGNESADSVEEAF-EAFGN 179 Query: 162 EIPLIIDGGISKIGLESTIV--NVQCEKKVRILRPGGLEIETLKRAIS 207 EIPL ++ G ++ + ST+V + + + ILR G + ++ A+S Sbjct: 180 EIPLYLNAGPTRSHVASTVVGADSSDKDGIVILREGVISECEIRNALS 227 >gi|197335779|ref|YP_002155838.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio fischeri MJ11] gi|121308593|dbj|BAF43688.1| hypothetical protein [Vibrio fischeri] gi|197317269|gb|ACH66716.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio fischeri MJ11] Length = 206 Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats. Identities = 40/189 (21%), Positives = 72/189 (38%), Gaps = 4/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A + G + PT++ Y L N A+ R+ +I++ + D+S Sbjct: 14 ARLISQAVAIIRDGGVVIYPTDSGYALGCQLENKQALERICQIRRLDDKHNFTLLCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD L K PG T + L KT RVP L Sbjct: 74 ELSIYARVDNSIFRLLKNNTPGAYTFIFKGTKEVP-RRLMNPKRKTIGMRVPDNKIALDL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL + G + + + + LI++GG +T+++ + Sbjct: 133 LEALGEPLMSTTLILPGNEMAESDPEAIRDQLEHAVDLIMNGGYLGE-QPTTVIDFSDDD 191 Query: 188 KVRILRPGG 196 ++I R G Sbjct: 192 -IKIARVGA 199 >gi|326933011|ref|XP_003212603.1| PREDICTED: yrdC domain-containing protein, mitochondrial-like [Meleagris gallopavo] Length = 243 Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats. Identities = 56/199 (28%), Positives = 96/199 (48%), Gaps = 12/199 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + A L G +A+PT+TVYG+A +++ A+R +Y +K R PL + D+ + Sbjct: 37 VAAAVGALQQGGLVAVPTDTVYGVACLAQDSRAVRSIYSLKGRNGTKPLAICLGDVENIY 96 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 ++ V+ + L + PGP+TLVL + +++ R+P F ++L Sbjct: 97 RYCHVN-VPDELLQDLLPGPVTLVLKR--SEELNKDLNPFTSLVGVRIPNHPFIRELARA 153 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI------SKIGLESTIVNVQ 184 PLA+ SAN S Q S V + ++ L++DGG + L ST+V++ Sbjct: 154 CPGPLALTSANVSSQASTLTVSE--FQDLWPQLSLVVDGGPIGDVQSPECRLGSTVVDLS 211 Query: 185 CEKKVRILRPGGLEIETLK 203 K I+RPG T++ Sbjct: 212 VSGKFTIIRPGCALTSTVE 230 >gi|88810631|ref|ZP_01125888.1| putative translation factor SUA5 [Nitrococcus mobilis Nb-231] gi|88792261|gb|EAR23371.1| putative translation factor SUA5 [Nitrococcus mobilis Nb-231] Length = 207 Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats. Identities = 53/197 (26%), Positives = 77/197 (39%), Gaps = 6/197 (3%) Query: 3 IMSITD-SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 I +T +R+ E L G IA PT+T Y L A+ R+ ++K + Sbjct: 7 IHPMTPQPRLIRRTAEILQRGGVIAYPTDTAYALGCCMGEREAVERIRRLRKLHERHNFT 66 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 D+S + +A V + L K PGP T VL L KT RVP Sbjct: 67 LACRDLSDIGTYAKVGNNAFRLLKAHTPGPYTFVLPATGEVP-RRLQHPKRKTIGIRVPD 125 Query: 122 -GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-ST 179 + G PL + + ++ I ++ LIIDGG GLE ST Sbjct: 126 SAVANAICAELGAPLMTTTLLLPHEDLPLTDPELIRERIGAQLDLIIDGG--AGGLELST 183 Query: 180 IVNVQCEKKVRILRPGG 196 ++++ E I R G Sbjct: 184 VIDLTGETPAVIRRGVG 200 >gi|189468028|ref|ZP_03016813.1| hypothetical protein BACINT_04422 [Bacteroides intestinalis DSM 17393] gi|189436292|gb|EDV05277.1| hypothetical protein BACINT_04422 [Bacteroides intestinalis DSM 17393] Length = 204 Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats. Identities = 45/197 (22%), Positives = 77/197 (39%), Gaps = 8/197 (4%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICH 63 + L++ + L+ G I PT+T+Y + AI R+ IK+ P N L Sbjct: 8 KNNNPQDLQQIVDILNDGGLIIYPTDTMYAIGCHGLKERAIERICRIKEIDPRKNNLSII 67 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 D+S + ++A VD + L K PG T +L+ T P N K R+P Sbjct: 68 CYDLSSISEYAKVDNNTFKLMKRNLPGAFTFILN---GTTRLPKIFRNRKEVGIRMPDNA 124 Query: 123 FTKKLIETYGHPLAIPSANRSGQISIT--NVKHILSSSICKEIPLIIDGGISKIGLESTI 180 +++ P+ + + ++ + L+IDGGI STI Sbjct: 125 IIQEIARVLDAPIMTTTLPHEEHEDMEYCTDPELIDEKFGDLVDLVIDGGIGGT-ESSTI 183 Query: 181 VNVQCEKKVRILRPGGL 197 V+ + + + G Sbjct: 184 VDCTNGETEIVRQGKGW 200 >gi|192360293|ref|YP_001984039.1| Sua5/YciO/YrdC/YwlC family protein [Cellvibrio japonicus Ueda107] gi|190686458|gb|ACE84136.1| Sua5/YciO/YrdC/YwlC family protein [Cellvibrio japonicus Ueda107] Length = 233 Score = 166 bits (422), Expect = 3e-39, Method: Composition-based stats. Identities = 39/179 (21%), Positives = 70/179 (39%), Gaps = 5/179 (2%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A + G IA PTE V+GL + + A+ L +K+RP +I +++ ++ Sbjct: 57 AANMMRQGGVIAYPTEAVWGLGCNPFDEDAVADLLALKQRPVEKGVILIAANLQQIEPFI 116 Query: 75 S-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYG 132 +D L K WPGP+T ++ T + RV L +G Sbjct: 117 DHLDDLQRQRLKNTWPGPVTWLVPN--NGLAPHWITGAFPSVALRVTDHPVAAGLCRAFG 174 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 P+ S N +G+ N+ + ++ + G + S I ++ + VR Sbjct: 175 GPVVSTSCNPAGKPPARNIHEV-RRYFGGQLDAVSSGLAGRRTNPSEIRDLLTGQVVRP 232 >gi|146313348|ref|YP_001178422.1| putative ribosome maturation factor [Enterobacter sp. 638] gi|145320224|gb|ABP62371.1| translation factor SUA5 [Enterobacter sp. 638] Length = 200 Score = 166 bits (422), Expect = 3e-39, Method: Composition-based stats. Identities = 49/184 (26%), Positives = 79/184 (42%), Gaps = 8/184 (4%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 ++ +A + L IA PTE V+G+ D + TA+ RL E+K+RP LI ++ + Sbjct: 19 SIAQAVDVLKNEEVIAYPTEAVFGVGCDPDSETAVTRLLELKQRPVEKGLILIAANFEQL 78 Query: 71 KKHASVDPLSLHL---AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 K + L+ WPGP+T V L +T T + RV + Sbjct: 79 KPYIDDSMLTEQQRNTIFSAWPGPVTFVFPALPST--PSWLTGRFDSLAVRVTDHPLVVE 136 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L ET+G PL SAN +G + +L + P+++ G S I + Sbjct: 137 LCETFGKPLVSTSANLTGLPPCRTSQEVL-AQFGDGFPVVV-GETGGRLNPSEIRDALTG 194 Query: 187 KKVR 190 ++ R Sbjct: 195 ERFR 198 >gi|71027715|ref|XP_763501.1| hypothetical protein [Theileria parva strain Muguga] gi|68350454|gb|EAN31218.1| hypothetical protein, conserved [Theileria parva] Length = 454 Score = 166 bits (422), Expect = 3e-39, Method: Composition-based stats. Identities = 68/208 (32%), Positives = 100/208 (48%), Gaps = 10/208 (4%) Query: 3 IMSITDSNALRKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +++ + L G IAIPTETVYGLA + +I R+++IK+RP +PLI Sbjct: 62 VITGSPEEIYEICATILREPGGLIAIPTETVYGLAGNIHLDESILRIFKIKERPLDDPLI 121 Query: 62 CHVSDISMVKKHASVDP-----LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 HV ++ + L+LA+ F PGPLT+V + + L T Sbjct: 122 VHVHSFLYALRNLYNTNIVESFIVLYLARKFAPGPLTIV--ARRSQAVSALLTNGSDFIA 179 Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R P T KL+E PLA PSAN+ G IS T +H+ + + + I+D G IG Sbjct: 180 VRCPNNQITLKLLEFSEIPLAAPSANKFGHISPTCPEHVKNEFPNENL-HILDDGNCSIG 238 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLK 203 +ESTI+ V + PG E+ + Sbjct: 239 IESTIIKVYSDDNHYYYHPGHTELSNVN 266 >gi|212693543|ref|ZP_03301671.1| hypothetical protein BACDOR_03060 [Bacteroides dorei DSM 17855] gi|237708701|ref|ZP_04539182.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|237724150|ref|ZP_04554631.1| conserved hypothetical protein [Bacteroides sp. D4] gi|265756027|ref|ZP_06090494.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 3_1_33FAA] gi|212663796|gb|EEB24370.1| hypothetical protein BACDOR_03060 [Bacteroides dorei DSM 17855] gi|229437338|gb|EEO47415.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] gi|229457127|gb|EEO62848.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|263234105|gb|EEZ19706.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 3_1_33FAA] Length = 204 Score = 166 bits (422), Expect = 3e-39, Method: Composition-based stats. Identities = 54/195 (27%), Positives = 81/195 (41%), Gaps = 9/195 (4%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICH 63 + L + L+ G I PT+T+Y + AI R+ ++K P N L Sbjct: 8 KNNNPKDLEEVIRILEEGGLIIYPTDTMYAIGCHGLKERAIERICKLKNIDPRKNNLSII 67 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-G 122 D+S + ++A VD + L K PGP T +L+ T + P N K RVP Sbjct: 68 CYDLSNISEYAKVDNSTFKLMKRNLPGPFTFILN---TGNRLPKIFKNRKEVGIRVPDNN 124 Query: 123 FTKKLIETYGHPLAIPSANRSG--QISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 +++ P+ + I ++ KE+ LIIDGGI I STI Sbjct: 125 IIREICHILKAPIMTTTLPLKDGEDIEYITTPELIEEKFGKEVELIIDGGIGNI-EPSTI 183 Query: 181 VNVQCEKKVRILRPG 195 VN + I+R G Sbjct: 184 VNCTS-GEAEIVRQG 197 >gi|224368045|ref|YP_002602208.1| hypothetical protein HRM2_09310 [Desulfobacterium autotrophicum HRM2] gi|223690761|gb|ACN14044.1| conserved hypothetical protein [Desulfobacterium autotrophicum HRM2] Length = 224 Score = 166 bits (422), Expect = 3e-39, Method: Composition-based stats. Identities = 61/199 (30%), Positives = 103/199 (51%), Gaps = 6/199 (3%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + + +AC+ L AG + P + +YG+AVD+ NP AI R++ IK+RP NP++ ++D S Sbjct: 20 DFISRACDILRAGGIVIFPAKCLYGIAVDAFNPEAISRVFGIKQRPRKNPILVLINDRSD 79 Query: 70 VKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128 ++ P + L FWPG +T+V + L + + TA+ R+P K + Sbjct: 80 LEGLVKKVPKTARILMDRFWPGDITIVFEALD--RLPGILTAHTGKIGIRMPQHPVAKAL 137 Query: 129 -ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 G P+ SAN SG I+ ++ L + + LI+D G K G ST+V+V + Sbjct: 138 TRGLGKPITGTSANLSGAEGISRIQD-LPPVLVDRVDLILDAGRLKGGKGSTVVDVTG-Q 195 Query: 188 KVRILRPGGLEIETLKRAI 206 +V +LR G + + + Sbjct: 196 QVLVLREGEIPGAEIHGVL 214 >gi|198276288|ref|ZP_03208819.1| hypothetical protein BACPLE_02480 [Bacteroides plebeius DSM 17135] gi|198270730|gb|EDY95000.1| hypothetical protein BACPLE_02480 [Bacteroides plebeius DSM 17135] Length = 230 Score = 166 bits (422), Expect = 3e-39, Method: Composition-based stats. Identities = 50/195 (25%), Positives = 81/195 (41%), Gaps = 9/195 (4%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICH 63 L++ + L+ G I PT+TVY L + I R+ ++K P N L Sbjct: 35 KNNRPEDLQRIVDILNDGGIIIYPTDTVYALGCHALKERPIERICKLKNIDPRKNNLSII 94 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 D+S + ++A V + L K PGP T +L+ S P N K RVP Sbjct: 95 CYDLSNISEYARVSNATFKLMKRNLPGPFTFILNADSRL---PKIFRNRKEVGIRVPDNA 151 Query: 123 FTKKLIETYGHPLAIPSANRSG--QISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 +++ + P+ + I ++ +++ LIIDGG I ST+ Sbjct: 152 IIREICQLLDAPILTTTLPLEEGEDIEYITEPELIDEKFGEKVDLIIDGGTGGI-EPSTV 210 Query: 181 VNVQCEKKVRILRPG 195 +N C+ I+R G Sbjct: 211 INC-CDDVPEIVRQG 224 >gi|152981334|ref|YP_001352969.1| translation factor (SUA5) [Janthinobacterium sp. Marseille] gi|151281411|gb|ABR89821.1| translation factor (SUA5) [Janthinobacterium sp. Marseille] Length = 207 Score = 166 bits (422), Expect = 3e-39, Method: Composition-based stats. Identities = 43/189 (22%), Positives = 77/189 (40%), Gaps = 3/189 (1%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A + + G +A+PT++ Y L + A+ RL I+ + L D+S Sbjct: 14 ARLISQAVQIVRDGGIVALPTDSCYALVCHLDDKDAVARLRRIRNVDDKHHLTLLCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD + K PG T +L+ LS + KT RVP L Sbjct: 74 EIALYAKVDNQQYRMLKAATPGAYTFILEATKEVP-RRLSHPSRKTIGLRVPENRIVHAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E PL + G+ + + K + L+IDGG +T++++ + Sbjct: 133 LEELAQPLLGTTLILPGEDEPLTDPEDVRDRLNKVVDLVIDGGACSF-EPTTVIDLTSGE 191 Query: 188 KVRILRPGG 196 V + G Sbjct: 192 PVLQRQGRG 200 >gi|170291088|ref|YP_001737904.1| Sua5/YciO/YrdC/YwlC family protein [Candidatus Korarchaeum cryptofilum OPF8] gi|170175168|gb|ACB08221.1| Sua5/YciO/YrdC/YwlC family protein [Candidatus Korarchaeum cryptofilum OPF8] Length = 209 Score = 166 bits (422), Expect = 3e-39, Method: Composition-based stats. Identities = 58/198 (29%), Positives = 94/198 (47%), Gaps = 9/198 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + + + L G I PT+TVYGL D+ N A+RR+YE+K RP L VSDI Sbjct: 11 ESTIDEVVDALRKGKLIIYPTDTVYGLGADAENIDAVRRVYEVKGRPEEKRLTIAVSDID 70 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 M +++A VD +S L + F PG +T +L T+ + + R+P ++ Sbjct: 71 MAERYAVVDEISRRLMEKFLPGKVTFIL--KKTSRVPDIVNPE--AIGIRIPNIPIILRI 126 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I +G + SAN+SG + I E L++D G STIV++ + Sbjct: 127 IREFGGAITATSANKSGSP-PKLDPEEAAMEI--EADLLLDYGRLPPSRPSTIVDLTRGE 183 Query: 188 KVRILRPGGLEIETLKRA 205 V ++R G + + + Sbjct: 184 PV-LVREGDVPFSLVMKE 200 >gi|67920201|ref|ZP_00513721.1| Sua5/YciO/YrdC/YwlC [Crocosphaera watsonii WH 8501] gi|67857685|gb|EAM52924.1| Sua5/YciO/YrdC/YwlC [Crocosphaera watsonii WH 8501] Length = 217 Score = 166 bits (422), Expect = 3e-39, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 95/205 (46%), Gaps = 10/205 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + C L G + PT+TVY + D + +A++R+ ++K+ PL S +S + Sbjct: 17 IDEICSALRQGAIMLYPTDTVYAIGCDLNSKSAVQRVRQLKQLSNDKPLTFLCSSLSNIA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKKLIE 129 K+A V+ + + K PGP T +L +T + L + K+ RVP + +++ Sbjct: 77 KYAGVEDEAYRVMKRLIPGPYTFLLP--ATKAVPKLVMSPKRKSTGIRVPDHPICQAILQ 134 Query: 130 TYGHPLAIPSANRSGQ--ISITNVKH--ILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +P+ SA+ + T L + ++ +IID + STI+++ Sbjct: 135 GLENPIVSTSAHLPDEDGEFPTLGLEKVKLFDILENQVDIIIDNSLEPGFEVSTILDMTS 194 Query: 186 EKKVRILRPGGLEIETLKRAISVEL 210 + I+R G L E L+ + +++ Sbjct: 195 D-PPSIIRQG-LGWEELQNWVKLQV 217 >gi|326799831|ref|YP_004317650.1| Sua5/YciO/YrdC/YwlC family protein [Sphingobacterium sp. 21] gi|326550595|gb|ADZ78980.1| Sua5/YciO/YrdC/YwlC family protein [Sphingobacterium sp. 21] Length = 188 Score = 166 bits (422), Expect = 3e-39, Method: Composition-based stats. Identities = 44/189 (23%), Positives = 87/189 (46%), Gaps = 8/189 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 N + +A + L +G I PT+T++G+ D+ NP A+ ++Y++K R LI + + Sbjct: 4 NDINQALQVLKSGGVILYPTDTIWGIGCDATNPEAVDKVYQLKGRSKDKSLIILLDNEHK 63 Query: 70 VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + + ++ L + + PLT++ D ++ P A + R+ F ++L Sbjct: 64 LASYVQEIPDVAYQLIE-YTEKPLTIIYDGAK--NLAPNLVAEDGSIGIRIAKHRFCEQL 120 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--GLESTIVNVQC 185 I+ + P+ SAN SG+ S N +S I + I++ + STI+ + Sbjct: 121 IQRFRKPIVSTSANISGEPSPKNFLE-ISDEIKNGVDYIVEFEQDDLTPKQASTIMKLDA 179 Query: 186 EKKVRILRP 194 +R Sbjct: 180 SGAFSFIRR 188 >gi|160886924|ref|ZP_02067927.1| hypothetical protein BACOVA_04938 [Bacteroides ovatus ATCC 8483] gi|237721208|ref|ZP_04551689.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|293370410|ref|ZP_06616964.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides ovatus SD CMC 3f] gi|299148444|ref|ZP_07041506.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 3_1_23] gi|156107335|gb|EDO09080.1| hypothetical protein BACOVA_04938 [Bacteroides ovatus ATCC 8483] gi|229449004|gb|EEO54795.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|292634558|gb|EFF53093.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides ovatus SD CMC 3f] gi|298513205|gb|EFI37092.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 3_1_23] Length = 204 Score = 166 bits (422), Expect = 3e-39, Method: Composition-based stats. Identities = 49/202 (24%), Positives = 83/202 (41%), Gaps = 9/202 (4%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICH 63 + L++ + L+ G I PT+T+Y + AI R+ IK+ P N L Sbjct: 8 KNNNPQDLQRIIDILNDGGLIIYPTDTMYAIGCHGLKERAIERICRIKEIDPRKNNLSII 67 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-G 122 D+S + ++A VD L K PGP T +L+ T+ P N K R+P Sbjct: 68 CYDLSSISEYAKVDNNIFKLMKHNLPGPFTFILN---GTNRLPKIFRNRKEVGIRMPDNN 124 Query: 123 FTKKLIETYGHPLAIPSANRSGQIS--ITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 +++ P+ + ++ + L+IDGGI I ST+ Sbjct: 125 IIREIARLLDAPIMTTTLPYEEHEDLEYMTDPELIDEKFGDIVDLVIDGGIGGI-EPSTV 183 Query: 181 VNVQCEKKVRILRPGGLEIETL 202 V + ++ I+R G +E + Sbjct: 184 VKCT-DDELEIIRQGKGWLEEV 204 >gi|297518505|ref|ZP_06936891.1| hypothetical protein EcolOP_12763 [Escherichia coli OP50] Length = 175 Score = 166 bits (422), Expect = 3e-39, Method: Composition-based stats. Identities = 40/163 (24%), Positives = 66/163 (40%), Gaps = 2/163 (1%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A E + G I PT++ Y L + A+ R+ I++ P + D+S Sbjct: 14 QRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + ++ VD ++ L K PG T +L L KT RVP + L Sbjct: 74 ELSTYSFVDNVAFRLMKNNTPGNYTFILKGTKEVP-RRLLQEKRKTIGMRVPSNPIAQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 +E G P+ S G + + + K++ LII GG Sbjct: 133 LEALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGG 175 >gi|289581382|ref|YP_003479848.1| Sua5/YciO/YrdC/YwlC family protein [Natrialba magadii ATCC 43099] gi|289530935|gb|ADD05286.1| Sua5/YciO/YrdC/YwlC family protein [Natrialba magadii ATCC 43099] Length = 196 Score = 166 bits (422), Expect = 4e-39, Method: Composition-based stats. Identities = 55/198 (27%), Positives = 90/198 (45%), Gaps = 9/198 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +A + + G + PTETVYGL D+ +P A+ R++E+K R P+ V + Sbjct: 6 LDRAADAICDGDLVVYPTETVYGLGADALDPDAVERVFEVKGRDRSKPISLAVPSVPAAF 65 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIET 130 + F PGP+T++ L ++ + TA RVP L E Sbjct: 66 DYVRTTERERRFMATFLPGPVTVLCQRLE--NVPDVLTAGEDRVGIRVPDQPTALALCER 123 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G P+ SAN SG S+ ++ L + + + ++DGG + G EST+V+ E Sbjct: 124 AGTPITATSANVSGAGSVRRLEE-LDDGLRESVAAVLDGGETP-GTESTVVDPSSE---T 178 Query: 191 ILRPGGLEIETLKRAISV 208 I R G L + ++ + Sbjct: 179 IHRRGAL-ADEIETWFAT 195 >gi|254282932|ref|ZP_04957900.1| Sua5/YciO/YrdC/YwlC family protein [gamma proteobacterium NOR51-B] gi|219679135|gb|EED35484.1| Sua5/YciO/YrdC/YwlC family protein [gamma proteobacterium NOR51-B] Length = 208 Score = 166 bits (422), Expect = 4e-39, Method: Composition-based stats. Identities = 45/201 (22%), Positives = 78/201 (38%), Gaps = 9/201 (4%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 Q +I N + +A ++ G I PT++ Y L N +A+ R+ I++ Sbjct: 3 QFFAIHPENPQARLVAQAVTIVNKGGVIVYPTDSAYALGCLLGNKSALERIRRIRQLDDS 62 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 + D+S + +A VD + L + PGP T +L+ L KT Sbjct: 63 HNFTLVCRDLSELGNYARVDNTAYRLIRAHTPGPFTFILEATREVP-KRLQHPKRKTIGL 121 Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 RVP + L+ P+ + + + + + +IDGG GL Sbjct: 122 RVPDNAIAQALLAELDAPMMSVTLIMPDDEYPLTDPYDIRDILEHHVDAVIDGGYC--GL 179 Query: 177 EST-IVNVQCEKKVRILRPGG 196 E T +V++ C+ R G Sbjct: 180 EPTSVVDMTCDPPEITRRGLG 200 >gi|55822721|ref|YP_141162.1| Sua5/YciO/YrdC family protein [Streptococcus thermophilus CNRZ1066] gi|55738706|gb|AAV62347.1| hypothetical protein, Sua5/YciO/YrdC family protein [Streptococcus thermophilus CNRZ1066] Length = 201 Score = 166 bits (422), Expect = 4e-39, Method: Composition-based stats. Identities = 58/196 (29%), Positives = 100/196 (51%), Gaps = 8/196 (4%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 ++ E L+ G + +PTETVYGL + + A+ +YE+K RP + +V+ + Sbjct: 6 KQLRETLNNGEAVVLPTETVYGLFAKALDEKAVDYVYELKNRPRDKAMNLNVASYEDILF 65 Query: 73 HASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 ++ P L L F PGPLT++L + + + L T FR+P T++LI+ Sbjct: 66 YSKEQPKYLKQLYDAFLPGPLTIIL--KANDQVPRWINSGLATVGFRLPNHPVTRELIQA 123 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G PL PSAN+SG+ S + + + ++ D + +G++STI+++ R Sbjct: 124 EG-PLIGPSANKSGKESGRHFDD-IRAQFDFQVTGYQDDN-ALLGVDSTILDLSVS-PAR 179 Query: 191 ILRPGGLEIETLKRAI 206 ILR G + + L A+ Sbjct: 180 ILRQGKITKDDLLAAL 195 >gi|42520658|ref|NP_966573.1| Sua5/YciO/YrdC/YwlC family protein [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410398|gb|AAS14507.1| Sua5/YciO/YrdC/YwlC family protein [Wolbachia endosymbiont of Drosophila melanogaster] Length = 195 Score = 166 bits (422), Expect = 4e-39, Method: Composition-based stats. Identities = 57/197 (28%), Positives = 97/197 (49%), Gaps = 5/197 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + K + L + PTETVY LA ++ + +I ++Y+IKKR PL VSDI + Sbjct: 2 VSKIINAIQNNLLVCFPTETVYALACNALDNESIGKIYQIKKRSQNKPLSIFVSDIYNLT 61 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130 K A V + L F PGP+T +L L + + + R+P ++ Sbjct: 62 KIAKVKERYIDLINHFSPGPITYILPLKNNNMLPNEFF--KDSIGIRIPEHPIAISILNK 119 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 P+ S N SG+ S+ + SI + + ++I+ G+ESTI+++ E K++ Sbjct: 120 LKVPIVATSTNISGKESVCKAND-IPQSIKQHLSVVIEDDELVSGIESTIIDLT-EDKIK 177 Query: 191 ILRPGGLEIETLKRAIS 207 +LR G + ++T+ A S Sbjct: 178 VLREGAISLQTVNNAFS 194 >gi|145298417|ref|YP_001141258.1| hypothetical protein ASA_1410 [Aeromonas salmonicida subsp. salmonicida A449] gi|142851189|gb|ABO89510.1| conserved hypothetical protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 206 Score = 166 bits (421), Expect = 4e-39, Method: Composition-based stats. Identities = 43/189 (22%), Positives = 75/189 (39%), Gaps = 3/189 (1%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A + + G IA PT++ Y L + A+ R+ I++ + D+S Sbjct: 14 ARLIGQAVQIIQNGGVIAYPTDSGYALGCQMGDKGALERICRIRRIDPTHDFTLVCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD + L K PGP T + L KT RVP L Sbjct: 74 EISTYAKVDNTAFRLVKGNTPGPYTFIFKATKEVP-RRLMNEKKKTIGIRVPANNIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL + G + + K++ L+++GG +T+V+ ++ Sbjct: 133 LEALGEPLLSTTLILPGSEMAEFDPEEIFDKLGKQLDLVVNGGYLGE-QPTTVVDFSDDE 191 Query: 188 KVRILRPGG 196 V R G Sbjct: 192 TVLRRRGAG 200 >gi|317492214|ref|ZP_07950643.1| Sua5/YciO/YrdC/YwlC family protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919553|gb|EFV40883.1| Sua5/YciO/YrdC/YwlC family protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 206 Score = 166 bits (421), Expect = 4e-39, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 73/189 (38%), Gaps = 4/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S + + E L G I PT++ Y L A+ R+ I+ + + D+S Sbjct: 14 SRLISQCVEVLRKGGVIVYPTDSGYALGCMLGEKNAMERICRIRNLDSNHNFTLVCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD + L K PG T +L L + KT RVP L Sbjct: 74 EISTYAFVDNTAFRLIKNNTPGHYTFILKATKEVP-RRLMSEKRKTIGLRVPSNPIALDL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + G + + ++ K + L+I GG +T++++ + Sbjct: 133 LAALGEPLMSTTLMLPGNDFAESDPEEIQDALGKVVDLVIHGGFLGQ-QPTTVIDLTEDS 191 Query: 188 KVRILRPGG 196 ++R G Sbjct: 192 P-EVVRVGA 199 >gi|160916151|ref|ZP_02078358.1| hypothetical protein EUBDOL_02178 [Eubacterium dolichum DSM 3991] gi|158431875|gb|EDP10164.1| hypothetical protein EUBDOL_02178 [Eubacterium dolichum DSM 3991] Length = 202 Score = 166 bits (421), Expect = 4e-39, Method: Composition-based stats. Identities = 56/208 (26%), Positives = 99/208 (47%), Gaps = 8/208 (3%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ + + ++ + L IA PT+TVYGL V + A+ L K RP P+ Sbjct: 1 METIRYHKED-IQAVVKQLKQKKVIAFPTDTVYGLGV-IYDEEALAALKYSKGRPENKPI 58 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 V ++ +++ A ++ + LA F PG T++L + + T ++T R+P Sbjct: 59 PTMVGSLAQMEEIAVLNEEAKKLAAAFMPGAFTMILKKKDS--VADFVTNGMETIGIRMP 116 Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 F +L+ G P+ + SAN SG+ + +LS + I I+ G + + ST Sbjct: 117 QDDFVLELLRQVGSPMLVTSANLSGEATGLVDVQVLS-QLDGRIDGIVLGE-AGGKVAST 174 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAIS 207 IV++ K++ILR G + L+ A+ Sbjct: 175 IVDMTS-GKLKILREGPISKAMLEAALK 201 >gi|283783533|ref|YP_003374287.1| Sua5/YciO/YrdC/YwlC family protein [Gardnerella vaginalis 409-05] gi|283442164|gb|ADB14630.1| Sua5/YciO/YrdC/YwlC family protein [Gardnerella vaginalis 409-05] Length = 228 Score = 166 bits (421), Expect = 4e-39, Method: Composition-based stats. Identities = 63/228 (27%), Positives = 102/228 (44%), Gaps = 22/228 (9%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M + + +L+ A + ++ G I +PT+TVYG+A D N A+ ++YE+K+RP L Sbjct: 1 MSKICTINEESLQMAAQIINEGGVIVVPTDTVYGVACDPFNEAAVAKIYELKRRPRTKAL 60 Query: 61 ICHVSDISMVKKHASVDPLSLHLA-KLFWPGPLTLVLDLLSTTDIHPLST---------- 109 +S + ++K P L + K F PG + + + L+T Sbjct: 61 QILMSGVEDLEKLGLYLPSPLDILGKKFLPGGYSPIARAKKDSVASKLATLCKTNETDEK 120 Query: 110 --------ANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICK 161 A T RVP I PLA SANRSG S +V+ ++ Sbjct: 121 TQETETTQAIESTQGVRVPDCPELMQILRVTGPLAASSANRSGNESADSVEEAFAA-FGN 179 Query: 162 EIPLIIDGGISKIGLESTIVNVQCEKK--VRILRPGGLEIETLKRAIS 207 EIPL ++ G ++ + ST+V K + ILR G + ++ A+S Sbjct: 180 EIPLYLNAGPTRSHVASTVVGADSNDKDGIVILREGVISECEIRNALS 227 >gi|289624034|ref|ZP_06456988.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289650385|ref|ZP_06481728.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. aesculi str. 2250] Length = 222 Score = 166 bits (421), Expect = 4e-39, Method: Composition-based stats. Identities = 47/190 (24%), Positives = 84/190 (44%), Gaps = 6/190 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E + AG + PT++ Y L + +AI R+ +++ + D+S Sbjct: 27 PRLIKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLS 86 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKK 126 + A VD + K PGP T +L+ +T ++ L +T RVP + Sbjct: 87 QLGLFAKVDTGAFRALKAHTPGPYTFILN--ATREVPRLVLHPKRRTIGLRVPSHPIAQA 144 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+E G PL S G + + + + ++ LII GGI I ST++N+ Sbjct: 145 LLEQLGEPLMSVSLIMPGDTVPLSDPYEMRQILEHQVDLIIGGGIGGIS-ASTVINLAGG 203 Query: 187 KKVRILRPGG 196 + ++R G Sbjct: 204 EP-EVVRVGC 212 >gi|256825640|ref|YP_003149600.1| Sua5/YciO/YrdC/YwlC family protein [Kytococcus sedentarius DSM 20547] gi|256689033|gb|ACV06835.1| Sua5/YciO/YrdC/YwlC family protein [Kytococcus sedentarius DSM 20547] Length = 440 Score = 166 bits (421), Expect = 4e-39, Method: Composition-based stats. Identities = 65/223 (29%), Positives = 98/223 (43%), Gaps = 11/223 (4%) Query: 3 IMSITDS------NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56 + TD A A E L G I +PT+TVYG+A D +P + + K+R A Sbjct: 4 VFDCTDPTDEQRDEAFGAATEALGEGRVIVMPTDTVYGVAADPFHPDGVPNVLAAKQRSA 63 Query: 57 MNPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115 P V + V A S+ P L + WPGPLT+V+ + T T Sbjct: 64 AMPPPVLVPSVRTVDGLATSLQPYVKTLIRELWPGPLTVVVQAQPSLQWDLGETNG--TV 121 Query: 116 CFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R+P + T PLA+ SAN +GQ + T+V ++ + + + +DGG + Sbjct: 122 ALRMPDHDLALRLLTRTGPLAVTSANVTGQPAATSVLEA-ATQLGSAVEVYLDGGPTAGN 180 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETS 218 STIV+ V ILR G L +E L+ I ++ + Sbjct: 181 RPSTIVDCTRPSPV-ILRLGALSVERLEEVIGPDVHLRLSPAE 222 >gi|224538268|ref|ZP_03678807.1| hypothetical protein BACCELL_03159 [Bacteroides cellulosilyticus DSM 14838] gi|224520128|gb|EEF89233.1| hypothetical protein BACCELL_03159 [Bacteroides cellulosilyticus DSM 14838] Length = 204 Score = 166 bits (421), Expect = 4e-39, Method: Composition-based stats. Identities = 49/196 (25%), Positives = 81/196 (41%), Gaps = 11/196 (5%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICH 63 + L++ + L+ G I PT+T+Y + AI R+ IK+ P N L Sbjct: 8 KNNNPQDLQQVVDILNDGGLIIYPTDTMYAIGCHGLKERAIERICRIKEIDPRKNNLSII 67 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 D+S + ++A VD + L K PG T +L+ T P N K R+P Sbjct: 68 CYDLSSISEYAKVDNNTFKLMKRNLPGAFTFILN---GTTRLPKIFRNRKEVGIRMPDNA 124 Query: 123 FTKKLIETYGHPLAIPSANRS--GQISITNVKHILSSSICKEIPLIIDGGISKIGLE-ST 179 +++ P+ + I ++ + L+IDGGI G E ST Sbjct: 125 IIQEIARILDAPIMTTTLPHEAHEDIEYCTDPELIDEKFGDLVDLVIDGGIG--GTEFST 182 Query: 180 IVNVQCEKKVRILRPG 195 IV+ ++ ++R G Sbjct: 183 IVDCTS-GEIEVIRQG 197 >gi|212709015|ref|ZP_03317143.1| hypothetical protein PROVALCAL_00047 [Providencia alcalifaciens DSM 30120] gi|212688381|gb|EEB47909.1| hypothetical protein PROVALCAL_00047 [Providencia alcalifaciens DSM 30120] Length = 189 Score = 166 bits (421), Expect = 4e-39, Method: Composition-based stats. Identities = 49/191 (25%), Positives = 75/191 (39%), Gaps = 8/191 (4%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 M + A++ + L IA PTE V+GL D + A+ +L +K+RP LI Sbjct: 1 MQNQSTPAIKNIIKALKQQHVIAYPTEAVFGLGCDPDSEIAVNQLLALKQRPWEKGLILI 60 Query: 64 VSDISMVKKHASVDPL---SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 + +K + L WPGP+T V+ TT T T RV Sbjct: 61 ADNYEQLKNYVDDSQLNEQQRQAMFATWPGPVTWVIPAKKTT--PKWLTGQFDTLAVRVT 118 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 K L YG P+ SAN SG + +++ K+ ++DG + S Sbjct: 119 NHELVKALCSQYGKPIVSTSANLSGLEPCRTTEEVIAQF--KDTVPVLDGDVGGRLNPSE 176 Query: 180 IVNVQCEKKVR 190 I + + R Sbjct: 177 IRDAMTGQLYR 187 >gi|150004545|ref|YP_001299289.1| hypothetical protein BVU_1995 [Bacteroides vulgatus ATCC 8482] gi|254882717|ref|ZP_05255427.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|319643977|ref|ZP_07998552.1| hypothetical protein HMPREF9011_04155 [Bacteroides sp. 3_1_40A] gi|149932969|gb|ABR39667.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482] gi|254835510|gb|EET15819.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|317384501|gb|EFV65468.1| hypothetical protein HMPREF9011_04155 [Bacteroides sp. 3_1_40A] Length = 204 Score = 166 bits (421), Expect = 4e-39, Method: Composition-based stats. Identities = 54/195 (27%), Positives = 81/195 (41%), Gaps = 9/195 (4%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICH 63 + L + L+ G I PT+T+Y + AI R+ ++K P N L Sbjct: 8 KNNNPKDLEEVIRILEEGGLIIYPTDTMYAIGCHGLKERAIERICKLKNIDPRKNNLSII 67 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-G 122 D+S + ++A VD + L K PGP T +L+ T + P N K RVP Sbjct: 68 CYDLSNISEYAKVDNSTFKLMKRNLPGPFTFILN---TGNRLPKIFKNRKEVGIRVPDNN 124 Query: 123 FTKKLIETYGHPLAIPSANRSG--QISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 +++ P+ + I ++ KE+ LIIDGGI I STI Sbjct: 125 IIREICHILKAPIMTTTLPLKDGEDIEYITTPELIEEKFGKEVELIIDGGIGSI-EPSTI 183 Query: 181 VNVQCEKKVRILRPG 195 VN + I+R G Sbjct: 184 VNCT-NGEAEIVRQG 197 >gi|255691112|ref|ZP_05414787.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides finegoldii DSM 17565] gi|260623465|gb|EEX46336.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides finegoldii DSM 17565] Length = 204 Score = 166 bits (421), Expect = 4e-39, Method: Composition-based stats. Identities = 47/200 (23%), Positives = 79/200 (39%), Gaps = 8/200 (4%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICH 63 + L++ + L+ G I PT+T+Y + AI R+ IK+ P N L Sbjct: 8 KNNNPQDLQRIIDILNDGGLIIYPTDTMYAIGCHGLKERAIERICRIKEIDPRKNNLSII 67 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-G 122 D+S + ++A VD L K PGP T +L+ T+ P N K R+P Sbjct: 68 CYDLSSISEYAKVDNNVFKLMKHNLPGPFTFILN---GTNRLPKIFRNRKEVGIRMPDNH 124 Query: 123 FTKKLIETYGHPLAIPSANRS--GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 +++ P+ + + ++ + L+IDGGI I ST+ Sbjct: 125 IIREIARLLDAPIMTTTLPHEENEDLEYITDPELIDEKFGDIVDLVIDGGIGGI-EPSTV 183 Query: 181 VNVQCEKKVRILRPGGLEIE 200 V + + + G E Sbjct: 184 VKCTENEPEIVRQGKGWLEE 203 >gi|298208805|ref|YP_003716984.1| putative Sua5/yciO/yrdC family protein [Croceibacter atlanticus HTCC2559] gi|83848732|gb|EAP86601.1| putative Sua5/yciO/yrdC family protein [Croceibacter atlanticus HTCC2559] Length = 206 Score = 166 bits (421), Expect = 5e-39, Method: Composition-based stats. Identities = 45/197 (22%), Positives = 82/197 (41%), Gaps = 9/197 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP-LICHVSD 66 + +++ L G + PT+TVYGL D N +A+ R+ ++K D Sbjct: 13 NPKQIKQVVNALRDGALVIYPTDTVYGLGCDISNVSALERIAKLKNVKLEKANFSFICED 72 Query: 67 ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 +S + + +D + + K PGP T +L + P KT RVP Sbjct: 73 LSNLSDYVKQIDTRTFKILKRCLPGPYTFILPGNNNL---PNVFKKKKTVGIRVPDNSIC 129 Query: 125 KKLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 L+ G+P+ S I T ++ K + ++IDGG + ST++++ Sbjct: 130 NALVSGLGNPIISTSIRDEDDVIEYTTDPSLILEKWDKHVDIVIDGGYGD-NIASTVIDL 188 Query: 184 QCEKKVRILRPGGLEIE 200 ++ ++R G +E Sbjct: 189 TGDE-AEVIREGKGSLE 204 >gi|58696928|ref|ZP_00372427.1| Sua5/YciO/YrdC/YwlC family protein [Wolbachia endosymbiont of Drosophila simulans] gi|225630533|ref|YP_002727324.1| Sua5/YciO/YrdC/YwlC family protein [Wolbachia sp. wRi] gi|58536842|gb|EAL60054.1| Sua5/YciO/YrdC/YwlC family protein [Wolbachia endosymbiont of Drosophila simulans] gi|225592514|gb|ACN95533.1| Sua5/YciO/YrdC/YwlC family protein [Wolbachia sp. wRi] Length = 195 Score = 166 bits (421), Expect = 5e-39, Method: Composition-based stats. Identities = 57/197 (28%), Positives = 97/197 (49%), Gaps = 5/197 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + K + L + PTETVY LA ++ + +I ++Y+IKKR PL VSDI + Sbjct: 2 VSKIINAIQNNLLVCFPTETVYALACNALDNESIGKIYQIKKRSQNKPLSIFVSDIYNLT 61 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130 K A V + L F PGP+T +L L + + + R+P ++ Sbjct: 62 KIAKVKERYIDLINHFSPGPITYILPLKNNNILPNEFF--KDSIGIRIPEHPIAISILNK 119 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 P+ S N SG+ S+ + SI + + ++I+ G+ESTI+++ E K++ Sbjct: 120 LKVPIVATSTNISGKESVCKAND-IPQSIKQHLSVVIEDDELVSGIESTIIDLT-EDKIK 177 Query: 191 ILRPGGLEIETLKRAIS 207 +LR G + ++T+ A S Sbjct: 178 VLREGAISLQTVNNAFS 194 >gi|328946332|gb|EGG40476.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK1087] Length = 196 Score = 166 bits (421), Expect = 5e-39, Method: Composition-based stats. Identities = 66/193 (34%), Positives = 102/193 (52%), Gaps = 8/193 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + K + L AG +PTETVYGL + N A+ R+YE+K+RP L +V+ + + Sbjct: 1 MDKIEKTLAAGGAAVLPTETVYGLFAQALNQEAVERVYELKRRPRDKALNLNVASLEEIY 60 Query: 72 KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129 + P L L + F PGPLT++L + + + ++T FR+P T LI Sbjct: 61 AFSKNQPCYLEQLYQAFLPGPLTIILQ--ANDRVPAWINSGMETVGFRIPKHPVTLDLIR 118 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 YG PL PSAN SG+ S T+ + I+ +E+ I D + G +STI+++ EK + Sbjct: 119 KYG-PLIGPSANLSGKASGTSFQQIMMD-FQEEVSGIEDDA-ALTGQDSTILDLSGEKAL 175 Query: 190 RILRPGGLEIETL 202 ILR G + E + Sbjct: 176 -ILRQGVITREDI 187 >gi|158285728|ref|XP_308435.3| AGAP007397-PA [Anopheles gambiae str. PEST] gi|157020133|gb|EAA04653.3| AGAP007397-PA [Anopheles gambiae str. PEST] Length = 272 Score = 166 bits (421), Expect = 5e-39, Method: Composition-based stats. Identities = 63/210 (30%), Positives = 106/210 (50%), Gaps = 9/210 (4%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +++S +A A L AG IAIPT+TVYGL + NP AI RLY IK R + P+ Sbjct: 58 KVISTNRKDAKAIAVAKLQAGEVIAIPTDTVYGLTCSANNPEAIHRLYNIKGRHELKPVA 117 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 V+ I V++ D L+ L +PG +TLV+ S + +P + R+ Sbjct: 118 ICVASIEDVRQWGETDHLNDELLGELFPGAVTLVVRRSSKLN-NPALNPGVANIGIRITE 176 Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE--- 177 F + + E + P+A+ SAN+S S NV+ + E+ + DGG + E Sbjct: 177 NKFIQHVCEAFQQPIALTSANKSSSKSTLNVEE--FKELWGELGAVFDGGQLGLSEEQRA 234 Query: 178 -STIVNVQCEKKVRILRPGGLEIETLKRAI 206 ST++++ ++ +I+R G + +E + + + Sbjct: 235 ASTVIDLSEPERYKIIRWG-VSVEKIIKTV 263 >gi|311743974|ref|ZP_07717780.1| Sua5/YciO/YrdC/YwlC family protein [Aeromicrobium marinum DSM 15272] gi|311313104|gb|EFQ83015.1| Sua5/YciO/YrdC/YwlC family protein [Aeromicrobium marinum DSM 15272] Length = 216 Score = 166 bits (421), Expect = 5e-39, Method: Composition-based stats. Identities = 57/183 (31%), Positives = 87/183 (47%), Gaps = 5/183 (2%) Query: 24 PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH- 82 + +PT+TVYG+A +S +P+A+ RL K R P V + ++ A+ P L Sbjct: 28 LVVVPTDTVYGIAANSFSPSAVARLLAAKGRGRDMPPPVLVGAPTTIEALATDIPSWLRH 87 Query: 83 LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANR 142 L WPGPLT+V + T T R+P + PLA+ SAN Sbjct: 88 LIGRHWPGPLTVVCRQQPSLTWDLGDT--HDTVAVRMPDDPVALAVLRDSGPLAVSSANT 145 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202 +G + T V+ + + + +DGG S+ G STI++V RILR G +++ETL Sbjct: 146 TGAPAATTVEQA-EEMLGDSVAVYLDGGPSRGGTPSTILDVT-AHTPRILRAGAIDLETL 203 Query: 203 KRA 205 Sbjct: 204 HEF 206 >gi|227111427|ref|ZP_03825083.1| hypothetical protein PcarbP_00610 [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 206 Score = 166 bits (421), Expect = 5e-39, Method: Composition-based stats. Identities = 45/188 (23%), Positives = 74/188 (39%), Gaps = 4/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ EFL G I PT++ Y L A+ R+ I+ + + D+S Sbjct: 14 PRLINQSVEFLHKGGVIVYPTDSGYALGCMLGEKNALERICRIRDLGSDHNFTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD + L K PG T +L L KT RVP +L Sbjct: 74 ELSTYAHVDNSAFRLIKNNTPGNYTFILKATKEVP-RRLMNEKRKTIGLRVPSNPIALEL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + PL + G + + + K++ LII GG S +T++++ E Sbjct: 133 LAALNEPLMSTTLMLPGNDFAESDPEEIQDRLGKQVDLIIHGG-SLGQQPTTVIDLT-ES 190 Query: 188 KVRILRPG 195 R+ R G Sbjct: 191 APRVAREG 198 >gi|94499321|ref|ZP_01305859.1| putative translation factor (SUA5) [Oceanobacter sp. RED65] gi|94428953|gb|EAT13925.1| putative translation factor (SUA5) [Oceanobacter sp. RED65] Length = 207 Score = 166 bits (421), Expect = 5e-39, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 83/205 (40%), Gaps = 5/205 (2%) Query: 1 MQIMSITD-SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 QI T +++A + L G IPT+ Y LA ++ A+ R+ I+K + Sbjct: 5 FQIHPETPQPRLVKQAADILKQGGLAVIPTDCAYALACHIQDKQALERVKRIRKLDDKHN 64 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 D++ + +A VD + L K PG T +LD L K RV Sbjct: 65 FTLMCRDLTEISTYAKVDNTAYRLLKNHTPGAFTFILDGTREVP-RRLMHPKRKQIGIRV 123 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P ++E G PL S G + + + + + L++DGG + Sbjct: 124 PDNAIACAIMEELGEPLMTTSLIMPGDTMPLSDPYDIRQMLEHAVDLVVDGGYCGF-EAT 182 Query: 179 TIVNVQCEKKVRILRPGGLEIETLK 203 T+V++ ++ I R G ++ L+ Sbjct: 183 TVVDMTGDE-YSITRQGVGQLPELE 206 >gi|149907888|ref|ZP_01896556.1| Sua5/YciO/YrdC/YwlC family protein [Moritella sp. PE36] gi|149808894|gb|EDM68825.1| Sua5/YciO/YrdC/YwlC family protein [Moritella sp. PE36] Length = 206 Score = 166 bits (421), Expect = 5e-39, Method: Composition-based stats. Identities = 41/189 (21%), Positives = 72/189 (38%), Gaps = 3/189 (1%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A L G I PT++ Y L + A+ R+ +I+K + D+S Sbjct: 14 ARLISQAVAILRDGGVIIYPTDSGYALGCHLGDKNALERICKIRKLDKDHNFTLLCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A V+ + K PGP T + L KT RVP + Sbjct: 74 ELSLYARVENQAYRALKNNTPGPFTFIFKGTKEVP-RRLMNPKRKTIGIRVPDNTIALAI 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G P+ S G + + ++ LII+GG + +T+V+ Sbjct: 133 LEALGEPMMSTSLILPGNEGAEFDPEAIRDQLENQVELIINGGYLGEQV-TTVVDYSEGD 191 Query: 188 KVRILRPGG 196 V + + G Sbjct: 192 AVIVRQGAG 200 >gi|254251991|ref|ZP_04945309.1| Sua5/YciO/YrdC/YwlC [Burkholderia dolosa AUO158] gi|124894600|gb|EAY68480.1| Sua5/YciO/YrdC/YwlC [Burkholderia dolosa AUO158] Length = 210 Score = 166 bits (421), Expect = 5e-39, Method: Composition-based stats. Identities = 51/193 (26%), Positives = 85/193 (44%), Gaps = 4/193 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E + G IA+PT++ Y LA + A+ R+ I+ L V D+S Sbjct: 14 PRLIKQAAEIVSKGGVIAMPTDSSYALACHLDDKDAVERVRRIRGLDEKQHLSLLVRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + A VD L K PGP +L LS + KT RVP T L Sbjct: 74 ELANFAMVDNRQYRLIKSVTPGPYVFILQATKEVP-RRLSHPSRKTIGLRVPDHAITLAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E+ G PL + N + + + K++ L+IDGG ST++++ ++ Sbjct: 133 LESLGQPLLGTTLILPPDDDPLNDPEDIRARLEKQVDLVIDGGACPR-EPSTVIDLTGDE 191 Query: 188 KVRILRPGGLEIE 200 +++R G +E Sbjct: 192 P-QLVRAGRGALE 203 >gi|271500650|ref|YP_003333675.1| Sua5/YciO/YrdC/YwlC family protein [Dickeya dadantii Ech586] gi|270344205|gb|ACZ76970.1| Sua5/YciO/YrdC/YwlC family protein [Dickeya dadantii Ech586] Length = 206 Score = 166 bits (420), Expect = 5e-39, Method: Composition-based stats. Identities = 41/188 (21%), Positives = 70/188 (37%), Gaps = 4/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + E L I PT++ Y L + A+ R+ I++ + D+S Sbjct: 14 PRLINQTVEILRKSGVIVYPTDSGYALGCMLEDKAAMERICRIRELDQNHNFTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD + L K PG T +L L KT RVP L Sbjct: 74 ELSSYAYVDNAAFRLIKNNTPGNYTFILKATKEVP-RRLMNDKRKTIGMRVPSNPIALDL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + PL + G + + + K + LII GG +T++++ + Sbjct: 133 LSVLNEPLMSTTLMLPGNDFAESDPEEIQEQLGKRVDLIIHGGFLGQ-QPTTVIDLTEDV 191 Query: 188 KVRILRPG 195 V ++R G Sbjct: 192 PV-VVREG 198 >gi|149372161|ref|ZP_01891431.1| translation factor [unidentified eubacterium SCB49] gi|149354928|gb|EDM43490.1| translation factor [unidentified eubacterium SCB49] Length = 205 Score = 166 bits (420), Expect = 5e-39, Method: Composition-based stats. Identities = 47/207 (22%), Positives = 91/207 (43%), Gaps = 13/207 (6%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPA 56 + + I D+N +++ + G + P++TVY L D N +A RL ++K +P Sbjct: 3 EFIKIYDNNPNEKDIKRVVSIIKKGGLVIYPSDTVYALGCDVTNKSAYERLAKLKGVKPE 62 Query: 57 MNPLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115 D+S + + +D + L K +PGP T +L + + K Sbjct: 63 KANFSIVCEDLSNLSDYVKQIDGTTFKLLKRAFPGPYTFILP---SNNNLTGYFKKKKEV 119 Query: 116 CFRVPCG-FTKKLIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGGISK 173 RVP T+ +I+ G+P+ S ++ T ++ K + +++DGG Sbjct: 120 GIRVPDNTITQAIIKELGNPIVSTSIKDEDEVLEYTTDPELIFEKWEKLVDVVVDGGYGD 179 Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIE 200 + STI+++ + V ++R G +E Sbjct: 180 -NVASTIIDITSGEPV-LVREGKGSLE 204 >gi|120436667|ref|YP_862353.1| YrdC domain-containing protein [Gramella forsetii KT0803] gi|117578817|emb|CAL67286.1| protein containing YrdC domain [Gramella forsetii KT0803] Length = 206 Score = 166 bits (420), Expect = 5e-39, Method: Composition-based stats. Identities = 46/207 (22%), Positives = 88/207 (42%), Gaps = 13/207 (6%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 +++ I D N + K E L G I PT+T+YGL D N +A+ ++ +IK Sbjct: 3 ELLRIYDENPAPKHINKVVETLRKGGLIIYPTDTIYGLGCDITNVSALEKIAQIKNVKLE 62 Query: 58 NP-LICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115 D+S + + +D + + K PGP T +L ++ P KT Sbjct: 63 KANFSFVCEDLSNLSDYVKQIDSSTFKILKRSLPGPYTFILPGGNSL---PNVFKKKKTV 119 Query: 116 CFRVPC-GFTKKLIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGGISK 173 RVP + ++ G+P+ S ++ + ++ + ++IDGG Sbjct: 120 GIRVPDNNICRAIVNGLGNPIVSTSIRDEDEVLEYSTDPELIKEKWDHLVDIVIDGGFGD 179 Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIE 200 + ST++++ + ++R G I+ Sbjct: 180 -NIASTVIDLTTGEP-EVIREGKGRID 204 >gi|254515167|ref|ZP_05127228.1| Sua5/YciO/YrdC/YwlC family protein [gamma proteobacterium NOR5-3] gi|219677410|gb|EED33775.1| Sua5/YciO/YrdC/YwlC family protein [gamma proteobacterium NOR5-3] Length = 208 Score = 166 bits (420), Expect = 5e-39, Method: Composition-based stats. Identities = 48/188 (25%), Positives = 84/188 (44%), Gaps = 4/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +R+A + + G I PT++ Y L + A+ R+ I+K + D+S Sbjct: 14 ARLVRQAADIVRGGGVIVYPTDSAYALGCHIGDKAALDRIRRIRKLDDRHNFTLVCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD + L K + PGP T +L + L + +T RVP T+ L Sbjct: 74 EIATYARVDNVVYRLLKQYTPGPYTFILKATTEVP-RRLMQSKRRTIGLRVPDNAITQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL S G + + + E+ L++DGG + +T+V++ EK Sbjct: 133 LGDLGEPLMSVSLIMPGDELPLIDPYEIRELLEHEVDLVVDGGYCGM-EATTVVDLADEK 191 Query: 188 KVRILRPG 195 + +LR G Sbjct: 192 PM-LLRAG 198 >gi|16329324|ref|NP_440052.1| hypothetical protein sll0216 [Synechocystis sp. PCC 6803] gi|1651805|dbj|BAA16732.1| sll0216 [Synechocystis sp. PCC 6803] Length = 210 Score = 166 bits (420), Expect = 6e-39, Method: Composition-based stats. Identities = 50/200 (25%), Positives = 92/200 (46%), Gaps = 7/200 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + C+ L G + PT+TVY + D + A++R+ ++K+ PL S +S Sbjct: 14 QRTVEMICKSLRQGAIMLYPTDTVYAIGCDLNDKNAVQRVRQLKQLSNNKPLTFLCSSLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLST-ANLKTACFRVPC-GFTKK 126 + ++A V + L + PGP T +L +T + L KT RVP ++ Sbjct: 74 NIAEYAVVADDAYRLMRKLIPGPYTFLLP--ATKQVPKLVVEPKRKTTGIRVPDRPICQE 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHI-LSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 ++++ G+P+ SA+ Q + L K + +IID S+I++ Sbjct: 132 ILQSLGNPIISTSAHLPDQDEFVMAEKAKLFDLFDKLVDIIIDDDREPGYQTSSIIDFT- 190 Query: 186 EKKVRILRPGGLEIETLKRA 205 +K+ +++R G L ETL+ Sbjct: 191 DKEPKVVREG-LGWETLRDL 209 >gi|84393448|ref|ZP_00992205.1| Sua5/YciO/YrdC family protein [Vibrio splendidus 12B01] gi|84375964|gb|EAP92854.1| Sua5/YciO/YrdC family protein [Vibrio splendidus 12B01] Length = 185 Score = 166 bits (420), Expect = 6e-39, Method: Composition-based stats. Identities = 42/185 (22%), Positives = 81/185 (43%), Gaps = 7/185 (3%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + + + L G IA PTE V+G+ D NP AI++L ++K+RP LI + Sbjct: 2 DNFQHTLQALQQGEVIAYPTEGVFGVGCDPDNPQAIKKLLDLKQRPMEKGLILIAASYEQ 61 Query: 70 VKKHASVDPLSLHLA---KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + + L+ K WPGP+T ++ ++ + + ++ RV + Sbjct: 62 LLPYIDESQLTEAQLATVKATWPGPVTWIMPT--SSKVTDWVSGQFESIAVRVTDHPLVQ 119 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 ++ +G PL SAN +G+ + + + + + I++G S I + + Sbjct: 120 RMCNEFGKPLTSTSANLTGEPPCMTTEEV-QQQLGQHLVAILEGQTGGREKPSEIRDAKT 178 Query: 186 EKKVR 190 K +R Sbjct: 179 SKILR 183 >gi|153807484|ref|ZP_01960152.1| hypothetical protein BACCAC_01764 [Bacteroides caccae ATCC 43185] gi|149129846|gb|EDM21058.1| hypothetical protein BACCAC_01764 [Bacteroides caccae ATCC 43185] Length = 204 Score = 166 bits (420), Expect = 6e-39, Method: Composition-based stats. Identities = 47/200 (23%), Positives = 80/200 (40%), Gaps = 8/200 (4%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICH 63 + L++ + L+ G I PT+T+Y + AI R+ IK+ P N L Sbjct: 8 KNNNPQDLQRIIDILNDGGLIIYPTDTMYAIGCHGLKERAIERICRIKEIDPRKNNLSII 67 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CG 122 D+S + ++A VD L K PGP T +L+ T+ P N K R+P Sbjct: 68 CYDLSSISEYAKVDNNVFKLMKHNLPGPFTFILN---GTNRLPKIFRNRKEVGIRMPNNN 124 Query: 123 FTKKLIETYGHPLAIPSANRSGQISIT--NVKHILSSSICKEIPLIIDGGISKIGLESTI 180 +++ P+ + + ++ + L+IDGGI I ST+ Sbjct: 125 IIREIARLLDAPIMTTTLPYDEDEDLEYITDPELIDEKFGDIVDLVIDGGIGGI-EPSTV 183 Query: 181 VNVQCEKKVRILRPGGLEIE 200 V ++ + + G E Sbjct: 184 VKCTEDEPEIVRQGKGWLEE 203 >gi|219872045|ref|YP_002476420.1| putative translation factor (SUA5) [Haemophilus parasuis SH0165] gi|219692249|gb|ACL33472.1| putative translation factor (SUA5) [Haemophilus parasuis SH0165] Length = 206 Score = 166 bits (420), Expect = 6e-39, Method: Composition-based stats. Identities = 45/188 (23%), Positives = 75/188 (39%), Gaps = 5/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A E + G I PT++ Y L + A+ R+ I++ P + SD+S Sbjct: 14 QRLINQAVEIIKNGGVIVYPTDSGYALGCAIGDKHAMDRIVAIRRLPENHNFTLVCSDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A V S L K P P T +L +T D+ KT RVP L Sbjct: 74 ELSTYALVTNQSYRLIKNNVPNPYTFILP--ATKDVPRRLMTKRKTIGIRVPNNVIALAL 131 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I G P+ S + + + + + LII GG +T++++ + Sbjct: 132 ISALGEPILSCSLILPNEAITQSDPDEIREHLEHHVDLIIHGGYLGQS-PTTVIDLTQDS 190 Query: 188 KVRILRPG 195 I+R G Sbjct: 191 P-EIIRVG 197 >gi|227326053|ref|ZP_03830077.1| hypothetical protein PcarcW_01496 [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 206 Score = 166 bits (420), Expect = 6e-39, Method: Composition-based stats. Identities = 44/188 (23%), Positives = 74/188 (39%), Gaps = 4/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ EFL G I PT++ Y L A+ R+ I+ + + D+S Sbjct: 14 PRLINQSVEFLHKGGVIVYPTDSGYALGCMLGEKNALERICRIRDLGSDHNFTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD + L K PG T +L L KT RVP +L Sbjct: 74 ELSTYAHVDNSAFRLIKNNTPGNYTFILKATKEVP-RRLMNEKRKTIGLRVPSNPIALEL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + PL + G + + + K++ L+I GG S +T++++ E Sbjct: 133 LAALNEPLMSTTLMLPGNDFAESDPEEIQERLGKQVDLVIHGG-SLGQQPTTVIDLT-ES 190 Query: 188 KVRILRPG 195 R+ R G Sbjct: 191 VPRVAREG 198 >gi|53712278|ref|YP_098270.1| hypothetical protein BF0986 [Bacteroides fragilis YCH46] gi|60680456|ref|YP_210600.1| putative Sua5/yciO/yrdC family protein [Bacteroides fragilis NCTC 9343] gi|253563683|ref|ZP_04841140.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|265762469|ref|ZP_06091037.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|52215143|dbj|BAD47736.1| conserved hypothetical protein [Bacteroides fragilis YCH46] gi|60491890|emb|CAH06649.1| putative Sua5/yciO/yrdC family protein [Bacteroides fragilis NCTC 9343] gi|251947459|gb|EES87741.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|263255077|gb|EEZ26423.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] Length = 204 Score = 166 bits (420), Expect = 6e-39, Method: Composition-based stats. Identities = 53/201 (26%), Positives = 85/201 (42%), Gaps = 9/201 (4%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICH 63 + L++ + L+ G I PT+T+Y + AI R+ IK+ P N L Sbjct: 8 KNNNPQDLQRIVDLLNDGGLIIYPTDTMYAIGCHGLKERAIERICRIKEIDPKKNNLSII 67 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 D+S + ++A VD L K PGP T +L+ T+ P N K R+P Sbjct: 68 CYDLSSISEYAKVDNNIFKLMKRNLPGPFTFILN---GTNRLPKIFRNRKEVGIRMPDNS 124 Query: 123 FTKKLIETYGHPLAIPSANRSGQISIT--NVKHILSSSICKEIPLIIDGGISKIGLESTI 180 +++ P+ + I ++ + + L+IDGGI I ST+ Sbjct: 125 IIREIARLLDAPIMTTTLPHDEHEDIEYVTDPELIDEKLGDVVDLVIDGGIGGI-EPSTV 183 Query: 181 VNVQCEKKVRILRPGGLEIET 201 VN E + I+R G E+E Sbjct: 184 VNCT-EGEAAIVRQGKGELEE 203 >gi|251788008|ref|YP_003002729.1| SUA5/yciO/yrdC domain-containing protein [Dickeya zeae Ech1591] gi|247536629|gb|ACT05250.1| SUA5/yciO/yrdC domain protein [Dickeya zeae Ech1591] Length = 190 Score = 166 bits (420), Expect = 6e-39, Method: Composition-based stats. Identities = 50/197 (25%), Positives = 80/197 (40%), Gaps = 11/197 (5%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 +MS +S L + L IA PTE V+GL D + A+ RL +K+RP LI Sbjct: 1 MMSNVNSEELTLLLKQLREERVIAYPTEAVFGLGCDPDSEMAVERLLALKQRPREKGLIL 60 Query: 63 HVSDISMVKKHAS---VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 +D ++ + + WPGP+T V+ + T T + RV Sbjct: 61 IAADFRQLEPYVEMAALSDAQRQTIFTTWPGPVTWVIP--AKTSTPDWLTGRFNSLAVRV 118 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 ++L +G PL SAN +GQ V ++ + P +++G + S Sbjct: 119 SDHPLVRQLCLAFGKPLVSTSANLTGQPPCRTVSEVVR-QFGEGFP-VLNGCVGGRLNPS 176 Query: 179 TIVNVQCEKKVRILRPG 195 I + +LR G Sbjct: 177 EIRDALTG---EMLRQG 190 >gi|319897336|ref|YP_004135532.1| translation factor sua5 [Haemophilus influenzae F3031] gi|317432841|emb|CBY81206.1| conserved protein, putative translation factor SUA5 [Haemophilus influenzae F3031] Length = 207 Score = 166 bits (420), Expect = 6e-39, Method: Composition-based stats. Identities = 51/193 (26%), Positives = 81/193 (41%), Gaps = 7/193 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A E L G I PT++ Y L + A+ R+ I+K + SD+S Sbjct: 14 ARLINQAVEILQKGGVIVYPTDSGYALGCMMGDKHAMDRIVAIRKLSEGHNFTLVCSDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A V+ + L K PG T +L L T+ KT RVP L Sbjct: 74 ELSTYARVNNTAYRLIKNNTPGRYTFILTATKELP-RRLMTSKRKTIGLRVPDNKIALDL 132 Query: 128 IETYGHPLAIPSANRSGQISIT-NVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQC 185 + G P+ S + T + + + ++ LII GG +G E +T+V++ Sbjct: 133 LSALGEPILSCSLMLPNEEHTTQSDPEEIRDRLEHQVDLIIHGGY--LGQELTTVVDLTE 190 Query: 186 EKKVRILRPGGLE 198 E V ILR G Sbjct: 191 ESPV-ILREGSGS 202 >gi|76787929|ref|YP_329782.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus agalactiae A909] gi|77405491|ref|ZP_00782583.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus agalactiae H36B] gi|77408673|ref|ZP_00785406.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus agalactiae COH1] gi|76562986|gb|ABA45570.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus agalactiae A909] gi|77172721|gb|EAO75857.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus agalactiae COH1] gi|77175888|gb|EAO78665.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus agalactiae H36B] Length = 198 Score = 166 bits (420), Expect = 7e-39, Method: Composition-based stats. Identities = 54/191 (28%), Positives = 94/191 (49%), Gaps = 6/191 (3%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 + L+ + +PTETVYG+ + + A+ +YE+KKRP + ++ D + K++ Sbjct: 6 QILEDHGAVIMPTETVYGIFAKALSEEAVNHVYELKKRPRDKAMNLNICDFETILKYSKN 65 Query: 77 DPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPL 135 P L L F PGPLT++L+ ++ ++ + L + FR+P + PL Sbjct: 66 QPTYLKQLYDAFLPGPLTIILE--ASQEVPDWINSGLSSVGFRMPKHPVTLDMIANHGPL 123 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 PSAN SG S + ++ I D + G++STI+++ + +V+ILR G Sbjct: 124 IGPSANISGCDSGRVFSE-IQKQFNHQVLGIEDD-KALTGVDSTIIDLSGD-RVKILRQG 180 Query: 196 GLEIETLKRAI 206 + E L I Sbjct: 181 AITQEVLTATI 191 >gi|119471686|ref|ZP_01614071.1| putative double-stranded RNA-binding protein with unique protein fold, with YrdC/RibB domain [Alteromonadales bacterium TW-7] gi|119445465|gb|EAW26752.1| putative double-stranded RNA-binding protein with unique protein fold, with YrdC/RibB domain [Alteromonadales bacterium TW-7] Length = 187 Score = 165 bits (419), Expect = 7e-39, Method: Composition-based stats. Identities = 48/180 (26%), Positives = 76/180 (42%), Gaps = 7/180 (3%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A L+ G I PTE V+GL D N A+ +L IK+RP LI + + K+ Sbjct: 10 ALTCLNEGEVIVYPTEAVFGLGCDPDNQHAVEKLLAIKQRPVEKGLILIADNYGQLLKYV 69 Query: 75 SVDPLSLH-LAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIET 130 + + A +F WP +T V+ +T T T RV K+L + Sbjct: 70 DDAKVPMDKRADIFSSWPAAITWVMPAAKST--PKWLTGQFDTIAVRVTNHPTVKRLCQE 127 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 +G PL SAN +GQ ++ +++ ++ +D + STI + K R Sbjct: 128 FGKPLVSTSANLTGQETVISIEQA-KEQFADQVGFYVDEPLGGNTQPSTIKDAMTGKVFR 186 >gi|330866210|gb|EGH00919.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 209 Score = 165 bits (419), Expect = 7e-39, Method: Composition-based stats. Identities = 47/190 (24%), Positives = 84/190 (44%), Gaps = 6/190 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E + AG + PT++ Y L + +AI R+ +++ + D+S Sbjct: 14 PRLIKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKK 126 + A VD + K PGP T +L+ +T ++ L +T RVP + Sbjct: 74 QLGLFAKVDTGAFRALKAHTPGPYTFILN--ATREVPRLVLHPKRRTIGLRVPSHPIAQA 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+E G PL S G + + + + ++ LII GGI I ST++N+ Sbjct: 132 LLEQLGEPLMSVSLIMPGDTVPLSDPYEMRQILEHQVDLIIGGGIGGIS-ASTVINLAGG 190 Query: 187 KKVRILRPGG 196 + ++R G Sbjct: 191 EP-EVVRVGC 199 >gi|301161990|emb|CBW21534.1| putative Sua5/yciO/yrdC family protein [Bacteroides fragilis 638R] Length = 204 Score = 165 bits (419), Expect = 7e-39, Method: Composition-based stats. Identities = 53/201 (26%), Positives = 85/201 (42%), Gaps = 9/201 (4%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICH 63 + L++ + L+ G I PT+T+Y + AI R+ IK+ P N L Sbjct: 8 KNNNPQDLQRIVDLLNDGGLIIYPTDTMYAIGCHGLKERAIERICRIKEIDPKKNNLSII 67 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 D+S + ++A VD L K PGP T +L+ T+ P N K R+P Sbjct: 68 CYDLSSISEYAKVDNNIFKLMKRNLPGPFTFILN---GTNRLPKIFRNRKEVGIRMPDNS 124 Query: 123 FTKKLIETYGHPLAIPSANRSGQISIT--NVKHILSSSICKEIPLIIDGGISKIGLESTI 180 +++ P+ + I ++ + + L+IDGGI I ST+ Sbjct: 125 IIREIARLLDAPIMTTTLPYDEHEDIEYVTDPELIDEKLGDVVDLVIDGGIGGI-EPSTV 183 Query: 181 VNVQCEKKVRILRPGGLEIET 201 VN E + I+R G E+E Sbjct: 184 VNCT-EGEAVIVRQGKGELEE 203 >gi|24371637|ref|NP_715679.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella oneidensis MR-1] gi|81464359|sp|Q8EKQ3|RIMN_SHEON RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|24345396|gb|AAN53124.1|AE015455_5 Sua5/YciO/YrdC/YwlC family protein [Shewanella oneidensis MR-1] Length = 188 Score = 165 bits (419), Expect = 7e-39, Method: Composition-based stats. Identities = 50/178 (28%), Positives = 80/178 (44%), Gaps = 7/178 (3%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 + + G IA PTE VYGL D N TAI++L +K+RP LI S+ S + + Sbjct: 11 DVVLNGGVIAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWQKGLILVASEFSQLLAYVDE 70 Query: 77 DPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132 L+ +L WPGP T V+ + + + RV + L + G Sbjct: 71 SQLTDEQLELAFSKWPGPFTFVMPIKPH--VSRYLCGEFDSIAVRVSAHEGVRALCQALG 128 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 PL SAN +G+ + IL+ +I ++ G + + STI++ + K +R Sbjct: 129 KPLVSTSANLAGEDPALSGDEILN-VFEGKIDALVLGQLGEQRQPSTIIDARSGKILR 185 >gi|94265014|ref|ZP_01288783.1| Sua5/YciO/YrdC/YwlC [delta proteobacterium MLMS-1] gi|93454503|gb|EAT04788.1| Sua5/YciO/YrdC/YwlC [delta proteobacterium MLMS-1] Length = 208 Score = 165 bits (419), Expect = 7e-39, Method: Composition-based stats. Identities = 62/181 (34%), Positives = 95/181 (52%), Gaps = 6/181 (3%) Query: 21 AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80 G +A PTET YGLAVD NP A++RL+ K+RPA P++ V+ M+ S P + Sbjct: 25 EGGLVAFPTETYYGLAVDPFNPVALKRLFTAKQRPAQKPILNLVATQQMLPTLVSRVPEA 84 Query: 81 LH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIP 138 L FWPGPLTL+ ++ TAN T R+ + L G P+ Sbjct: 85 YRELMAAFWPGPLTLIFPARP--ELPAALTANSGTVGVRISSHPLAQALAAACGGPITAT 142 Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLE 198 SAN SG+ + + + + I LI+DGGI+ G ST+V + ++++R++R G + Sbjct: 143 SANLSGRAAAVSAA-EVEAQFGSGIDLILDGGITPGGTGSTLVGL-VDEELRLIREGVVP 200 Query: 199 I 199 + Sbjct: 201 V 201 >gi|268593577|ref|ZP_06127798.1| protein RimN [Providencia rettgeri DSM 1131] gi|291310854|gb|EFE51307.1| protein RimN [Providencia rettgeri DSM 1131] Length = 189 Score = 165 bits (419), Expect = 7e-39, Method: Composition-based stats. Identities = 53/191 (27%), Positives = 78/191 (40%), Gaps = 8/191 (4%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 MS + A+ L IA PTE V+GL D + TA+ +L E+K+RP LI Sbjct: 1 MSNISTPAIESIISSLQHEEVIAYPTEAVFGLGCDPDSETAVYKLLELKQRPWEKGLILI 60 Query: 64 VSDISMVKKHASVDPLSL---HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 +K + + L+ WPGP+T V+ + T T RV Sbjct: 61 ADSYEQLKDYIDDEQLTEEQKQAMFATWPGPVTWVIP--AKVTTPKWLTGRFDTIAVRVT 118 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 KKL YG PL SAN SG + ++ + IP ++DG + S Sbjct: 119 DHELVKKLCRHYGKPLVSTSANLSGLEPCRTTEEVI-AQFNGGIP-VLDGMVGGRQNPSE 176 Query: 180 IVNVQCEKKVR 190 I + + + R Sbjct: 177 IRDAKTGQLYR 187 >gi|91791398|ref|YP_561049.1| SUA5/yciO/yrdC-like protein [Shewanella denitrificans OS217] gi|123357281|sp|Q12TA0|RIMN_SHEDO RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|91713400|gb|ABE53326.1| translation factor SUA5 [Shewanella denitrificans OS217] Length = 188 Score = 165 bits (419), Expect = 7e-39, Method: Composition-based stats. Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 7/177 (3%) Query: 18 FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77 + G IA PTE VYGL D N AI +L +K+RP LI S + + V Sbjct: 12 VIAQGGVIAYPTEAVYGLGCDPDNDQAIEKLLAVKQRPWQKGLILVASSFEQLLPYVDVA 71 Query: 78 PLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133 L+ L A WPGP T V+ + S + + RV ++L ++ Sbjct: 72 QLTQAQLDFAHSKWPGPFTFVMPVKSH--VSNKLRGEFDSIAVRVSAHPIVRELCDSLNK 129 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 PL SAN +GQ + + IL+ +I ++ G + + STI++ + +R Sbjct: 130 PLVSTSANLAGQDPVLTSRQILTD-FADKIDALVLGDLGQQAQPSTIIDARSGLVLR 185 >gi|291617617|ref|YP_003520359.1| YciO [Pantoea ananatis LMG 20103] gi|291152647|gb|ADD77231.1| YciO [Pantoea ananatis LMG 20103] gi|327394045|dbj|BAK11467.1| protein YciO [Pantoea ananatis AJ13355] Length = 206 Score = 165 bits (419), Expect = 8e-39, Method: Composition-based stats. Identities = 44/188 (23%), Positives = 75/188 (39%), Gaps = 4/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A E+L+ G I PT++ Y L A+ R+ I++ + D+S Sbjct: 14 PRLINQAVEYLNKGGVIVYPTDSGYALGCRLEEKGAMERICRIRQLDGHHNFTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + ++ V + L K PG T +L L KT RVP L Sbjct: 74 ELSVYSQVGNSAFRLLKNNTPGNYTFILKATKEVP-RRLMNDKRKTIGLRVPSNPVALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E P+ S G + + SI K + LIIDGG + +T++++ + Sbjct: 133 LEALNEPMMSTSLILPGNDFTESDPEDIQHSIGKLVDLIIDGG-TLGQQPTTVIDLTSDA 191 Query: 188 KVRILRPG 195 ++R G Sbjct: 192 P-EVVREG 198 >gi|52550560|gb|AAU84409.1| putative translation factor [uncultured archaeon GZfos9E5] Length = 222 Score = 165 bits (419), Expect = 8e-39, Method: Composition-based stats. Identities = 51/195 (26%), Positives = 88/195 (45%), Gaps = 9/195 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ A + G + PTETVYGL D+ + A+R +Y+IK+R P+ VS Sbjct: 6 EDQIKTATAIIKNGGMVVYPTETVYGLGADAFSEAAVRNVYKIKRRAVTQPISIAVSSFE 65 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128 M+ + A +D + PGP+T++ + + TA + R P I Sbjct: 66 MLHEVADIDFECFEIIAELLPGPVTILF--KKKDIVPAILTAASEVVGVRFPDNEIVTRI 123 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICK--EIPLIIDGGISKIGLESTIVNVQCE 186 P+ SAN SG+ T ++ + K + +II+GG K + ST+V++ Sbjct: 124 IKETGPITATSANVSGRNPPTCIEEVEVELKLKVELLGIIINGGKCKYSMPSTVVDMSKA 183 Query: 187 -----KKVRILRPGG 196 +++ I R G Sbjct: 184 TANEKREIEIKRKGA 198 >gi|42573748|ref|NP_974970.1| yrdC protein-related [Arabidopsis thaliana] gi|332009969|gb|AED97352.1| DHBP synthase RibB-like alpha/beta domain-containing protein [Arabidopsis thaliana] Length = 288 Score = 165 bits (419), Expect = 8e-39, Method: Composition-based stats. Identities = 64/193 (33%), Positives = 100/193 (51%), Gaps = 4/193 (2%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 ++A E + + IA+PT+T+YG A D+ + A+ R+YEIK R +PL V D+ +K+ Sbjct: 77 QEAIEAIKSEKVIAVPTDTLYGFACDACSLEAVSRIYEIKGRKLTSPLAICVGDVLDIKR 136 Query: 73 HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETY 131 A+ L L PGP+TLVL ++ + + T RVP C F +++ Sbjct: 137 VATTSHLPHGLLDSLLPGPVTLVLQRGESSILEKSLNPGIGTIGVRVPDCEFIREVSRGS 196 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKKVR 190 G LA+ SAN SG S VK ++ + + DGG+ G STIV++ K + Sbjct: 197 GSVLALTSANLSGDRSSVCVKD--FENLWQHCAYVYDGGLLPSGRAGSTIVDLTKVGKYK 254 Query: 191 ILRPGGLEIETLK 203 I+RPG + T+ Sbjct: 255 IIRPGSAKQATVA 267 >gi|322373124|ref|ZP_08047660.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus sp. C150] gi|321278166|gb|EFX55235.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus sp. C150] Length = 201 Score = 165 bits (419), Expect = 8e-39, Method: Composition-based stats. Identities = 59/192 (30%), Positives = 96/192 (50%), Gaps = 8/192 (4%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 L G + +PTETVYGL + + A+ +YE+K RP + +V+ + ++ Sbjct: 10 AILANGGAVVLPTETVYGLFARALDEKAVNHVYELKNRPRDKAMNLNVASYEDILTYSKE 69 Query: 77 DPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134 P L L F PGPLT++L + + + L T FR+P T++LI+ G P Sbjct: 70 QPDYLKKLYDAFLPGPLTIIL--KANGQVPKWINSGLATVGFRLPNHPVTRELIQAEG-P 126 Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194 L PSAN+SG S H + + ++ D + +GL+STI+++ + RILR Sbjct: 127 LIGPSANKSGMASGRYFDH-IRAQFDFQVTGYQDDD-ALLGLDSTILDL-SDTPARILRQ 183 Query: 195 GGLEIETLKRAI 206 G + + L A+ Sbjct: 184 GKITKDDLLAAL 195 >gi|332880171|ref|ZP_08447853.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332681930|gb|EGJ54845.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 189 Score = 165 bits (419), Expect = 8e-39, Method: Composition-based stats. Identities = 49/192 (25%), Positives = 91/192 (47%), Gaps = 8/192 (4%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + +R+A E + G I PT+T++G+ D+ N A+RR+Y+IKKR LIC V Sbjct: 1 MNKEEDIRQAVEVMRRGGVILYPTDTIWGIGCDATNEEAVRRVYDIKKRDDSKALICLVD 60 Query: 66 DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123 ++++ V ++ L + + PLT++ D ++ P A + RV F Sbjct: 61 SDHRLQRYVSDVPNVAWDLIE-YATRPLTIIFD--KAKNLAPNLLAEDGSVGIRVTREEF 117 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK--IGLESTIV 181 +++L + + SAN SG+ S +S I + I+ + + S+I+ Sbjct: 118 SRQLCYRFQKAVVSTSANVSGEPSPACFDD-ISDEIKNAVDYIVQSRRKEKTKAVPSSII 176 Query: 182 NVQCEKKVRILR 193 + + +V I+R Sbjct: 177 KLGSDGEVAIIR 188 >gi|189461153|ref|ZP_03009938.1| hypothetical protein BACCOP_01800 [Bacteroides coprocola DSM 17136] gi|189432132|gb|EDV01117.1| hypothetical protein BACCOP_01800 [Bacteroides coprocola DSM 17136] Length = 203 Score = 165 bits (419), Expect = 8e-39, Method: Composition-based stats. Identities = 52/201 (25%), Positives = 84/201 (41%), Gaps = 9/201 (4%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICH 63 DS+ L+ + L+ G I PT+T+Y + + I R+ ++K P N L Sbjct: 8 KNNDSDVLQHIVDILNDGGIIIYPTDTMYAMGCHALKERPIERICKLKNIDPRKNNLSII 67 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-G 122 D+S + ++A V + L K PGP T VL+ S P N K RVP Sbjct: 68 CCDLSNISEYARVSNATFKLMKRNLPGPFTFVLNADSRL---PKIFRNRKEVGIRVPDNN 124 Query: 123 FTKKLIETYGHPLAIPSAN--RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 +++ P+ + + ++ E+ L+IDGGI + ST+ Sbjct: 125 IIREICHLLDAPILTTTLPLNPDEDVEYVTDPELIDEKFGSEVDLVIDGGIGGV-EPSTV 183 Query: 181 VNVQCEKKVRILRPGGLEIET 201 +N CE I+R G +E Sbjct: 184 INC-CEDVPEIIRQGKGVLEE 203 >gi|15679686|ref|NP_276803.1| hypothetical protein MTH1692 [Methanothermobacter thermautotrophicus str. Delta H] gi|22218836|pdb|1JCU|A Chain A, Solution Structure Of Mth1692 Protein From Methanobacterium Thermoautotrophicum gi|2622823|gb|AAB86164.1| conserved protein [Methanothermobacter thermautotrophicus str. Delta H] Length = 208 Score = 165 bits (419), Expect = 8e-39, Method: Composition-based stats. Identities = 52/206 (25%), Positives = 93/206 (45%), Gaps = 10/206 (4%) Query: 1 MQIMSIT----DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56 M I IT + L +A ++ G + PT+T+YGL V++ + A+RRL+ +K R Sbjct: 1 MLIRKITRKNPSPDVLEEAISVMEGGGIVIYPTDTIYGLGVNALDEDAVRRLFRVKGRSP 60 Query: 57 MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 P+ VS + + + + ++ L + PGP T+VL+ I + T Sbjct: 61 HKPVSICVSCVDEIPRFSRPSGDAMELMERILPGPYTVVLER--NELIPDVITGGSSRVG 118 Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 RVP + I P+ SAN SG+ ++ I+ + L++D G Sbjct: 119 IRVPDDEICRRI-AARFPVTATSANISGKPPSPRLEEIVRDL--DAVDLVLDAGDCLDME 175 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETL 202 ST++++ R+LR G ++ + Sbjct: 176 PSTVIDLTVN-PPRVLRRGKGPLDPV 200 >gi|71738162|ref|YP_275690.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558715|gb|AAZ37926.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas syringae pv. phaseolicola 1448A] Length = 209 Score = 165 bits (419), Expect = 8e-39, Method: Composition-based stats. Identities = 48/190 (25%), Positives = 85/190 (44%), Gaps = 6/190 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E + AG + PT++ Y L + +AI R+ +++ + D+S Sbjct: 14 PRLIKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKK 126 + A VD + K PGP T +L+ +T ++ L +T RVP + Sbjct: 74 QLGLFAKVDTGAFRALKAHTPGPYTFILN--ATREVPRLVLHPKRRTIGLRVPSHPIAQA 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+E G PL S G + + + + ++ LIIDGGI I ST++N+ Sbjct: 132 LLEQLGEPLMSVSLIMPGDTVPLSDPYEMRQILEHQVDLIIDGGIGGIS-ASTVINLAGG 190 Query: 187 KKVRILRPGG 196 + ++R G Sbjct: 191 EP-EVVRVGC 199 >gi|256811084|ref|YP_003128453.1| Sua5/YciO/YrdC/YwlC family protein [Methanocaldococcus fervens AG86] gi|256794284|gb|ACV24953.1| Sua5/YciO/YrdC/YwlC family protein [Methanocaldococcus fervens AG86] Length = 207 Score = 165 bits (419), Expect = 9e-39, Method: Composition-based stats. Identities = 62/211 (29%), Positives = 104/211 (49%), Gaps = 16/211 (7%) Query: 2 QIMSIT--DSNALRKACEFLD----AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP 55 +I+ I D N +K FL G I T+T+YG++ ++ + A++++Y+IKKR Sbjct: 5 KIIKIYEFDENERKKILNFLKEELLNGKIIICGTDTLYGISANALDENAVKKVYKIKKRD 64 Query: 56 AMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115 PL V + ++K+A V+ L+ + F PGPLT++L I P A Sbjct: 65 FNKPLSICVKNKEEIEKYAYVNDLAKKIIDEFLPGPLTIIL---KKKPIIPDIVAK-DYI 120 Query: 116 CFRVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174 R+P ++L PL SAN SG+ S T V+ I + K++ ++D G K Sbjct: 121 GIRIPDEAIIREL---SIVPLTTTSANISGEKSPTAVEEINPEIL-KKVDYVVDIGKCKY 176 Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRA 205 STI+ ++ + K+ +R G + I +K Sbjct: 177 SKPSTIIKIE-DNKIIPIREGAIPISKIKEM 206 >gi|147919401|ref|YP_686860.1| YrdC family translation factor [uncultured methanogenic archaeon RC-I] gi|110622256|emb|CAJ37534.1| putative translation factor (YrdC family) [uncultured methanogenic archaeon RC-I] Length = 192 Score = 165 bits (418), Expect = 9e-39, Method: Composition-based stats. Identities = 49/195 (25%), Positives = 88/195 (45%), Gaps = 13/195 (6%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + A + + G IA PTETVYG+ + + AI R++++K+RP PL VS I M Sbjct: 5 TDIGLAADIILKGGVIAYPTETVYGIGALATDVKAISRVFKVKRRPESMPLSIAVSSIEM 64 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129 +++ A + + F PGP+T++L + TA R P + Sbjct: 65 LQEVAEIVH--PDFIEKFLPGPVTVILRKKPV--LPDSLTAGSDYVGIRFPDHPVALDLI 120 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+ SAN G+ + + +++GG +K STIV+++ + Sbjct: 121 RRTGPIVSTSANLHGEPDPVTADEVTVE-----VDYLLEGGRAKYAGSSTIVDLR---EY 172 Query: 190 RILRPGGLEIETLKR 204 ++LR G + + ++ Sbjct: 173 KVLRKGAM-YDEVEE 186 >gi|332993793|gb|AEF03848.1| Sua5/YciO/YrdC/YwlC family protein [Alteromonas sp. SN2] Length = 206 Score = 165 bits (418), Expect = 9e-39, Method: Composition-based stats. Identities = 45/189 (23%), Positives = 76/189 (40%), Gaps = 3/189 (1%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 L +ACE + G + PT++ Y + + A+ +L I+ + D+S Sbjct: 14 QRLLNQACELIREGAVVVYPTDSGYAIGCQMEDKKALEQLCRIRDIGKDHNFTLMCRDMS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD + K PG T VL L KT RVP L Sbjct: 74 ELSIYAKVDNTAFRQIKNNTPGSYTFVLKATREVP-KRLQNPKRKTIGIRVPDNAIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +ET G PL S G + ++ ++ K++ +II GG +T++++ + Sbjct: 133 LETLGEPLMSTSLILPGNTMAESDPDVIRDNLEKQVGVIIHGGYLGE-QPTTVIDLSEDT 191 Query: 188 KVRILRPGG 196 V + R G Sbjct: 192 PVIMRRGTG 200 >gi|94269403|ref|ZP_01291453.1| Sua5/YciO/YrdC/YwlC [delta proteobacterium MLMS-1] gi|93451234|gb|EAT02135.1| Sua5/YciO/YrdC/YwlC [delta proteobacterium MLMS-1] Length = 212 Score = 165 bits (418), Expect = 9e-39, Method: Composition-based stats. Identities = 62/181 (34%), Positives = 95/181 (52%), Gaps = 6/181 (3%) Query: 21 AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80 G +A PTET YGLAVD NP A++RL+ K+RPA P++ V+ M+ S P + Sbjct: 29 EGGLVAFPTETYYGLAVDPFNPVALKRLFTAKQRPAQKPILNLVATQQMLPTLVSRVPEA 88 Query: 81 LH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIP 138 L FWPGPLTL+ ++ TAN T R+ + L G P+ Sbjct: 89 YRELMAAFWPGPLTLIFPARP--ELPAALTANSGTVGVRISSHPLAQALAAACGGPITAT 146 Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLE 198 SAN SG+ + + + + I LI+DGGI+ G ST+V + ++++R++R G + Sbjct: 147 SANLSGRAAAVSAA-EVEAQFGSGIDLILDGGITPGGTGSTLVGL-VDEELRLIREGVVP 204 Query: 199 I 199 + Sbjct: 205 V 205 >gi|269836450|ref|YP_003318678.1| Sua5/YciO/YrdC/YwlC family protein [Sphaerobacter thermophilus DSM 20745] gi|269785713|gb|ACZ37856.1| Sua5/YciO/YrdC/YwlC family protein [Sphaerobacter thermophilus DSM 20745] Length = 216 Score = 165 bits (418), Expect = 9e-39, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 95/206 (46%), Gaps = 6/206 (2%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +++ D A + L G I PT+TVYG+A +P A+ RLY +K RP P+ Sbjct: 8 RLIPGDDPGVPAAAADVLARGGLIVFPTDTVYGVAAAVDHPEAVARLYHVKGRPLDRPIP 67 Query: 62 CHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 VSD+ V + VDPL L L + FWPG LT+ + + + R+P Sbjct: 68 VLVSDLDQVPRLTGEVDPLVLDLLQRFWPGALTVAVPAAPW--LPREIVRDTGRVGLRMP 125 Query: 121 CGFTKKLIETYGHPLA-IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 I SANRSG+ +++ + LIIDGG + G+ ST Sbjct: 126 DHPLALAIIAAAGGALATTSANRSGEPETRTAAEA-DAALGDRVDLIIDGGPAPGGVPST 184 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRA 205 ++ V +++ + R G L+ E + RA Sbjct: 185 VL-VVDGRRLTVTRRGALDPEEIVRA 209 >gi|238896779|ref|YP_002921524.1| putative ribosome maturation factor [Klebsiella pneumoniae NTUH-K2044] gi|238549106|dbj|BAH65457.1| putative RNA-binding protein with unique protein fold [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 205 Score = 165 bits (418), Expect = 9e-39, Method: Composition-based stats. Identities = 50/187 (26%), Positives = 70/187 (37%), Gaps = 8/187 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 S A+ A L IA PTE V+G+ D + TA+ RL E+K+RP LI + Sbjct: 21 PSEAVAHAVAVLKNEHVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVEKGLILIAASF 80 Query: 68 SMVKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 +K + WPGP+T V T T + RV Sbjct: 81 EQLKPYIDDSRLSDSQREAIFSCWPGPVTFVFPARPET--PRWLTGRFDSLAVRVTNHPL 138 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 +L E YG PL SAN +GQ + + P ++DG S I + Sbjct: 139 VIELCEAYGKPLVSTSANLTGQPPCRTTAEV-HAQFGDSFP-VVDGATGGRQNPSEIRDA 196 Query: 184 QCEKKVR 190 + R Sbjct: 197 LTGELFR 203 >gi|229818488|ref|ZP_04448769.1| hypothetical protein BIFANG_03796 [Bifidobacterium angulatum DSM 20098] gi|229784358|gb|EEP20472.1| hypothetical protein BIFANG_03796 [Bifidobacterium angulatum DSM 20098] Length = 225 Score = 165 bits (418), Expect = 9e-39, Method: Composition-based stats. Identities = 64/213 (30%), Positives = 99/213 (46%), Gaps = 9/213 (4%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 ++ +ITD + L +A + G I IPT+TVYG+A D RN AI+R+Y+ K RP L Sbjct: 9 EVRAITDES-LAQAAAIVRGGGVIVIPTDTVYGIACDPRNAEAIQRIYQAKHRPQFKALQ 67 Query: 62 CHVSDISMVKKHASVDPLSL-HLAKLFWPG---PLTLVLDLLSTTDIHPLSTANLKTACF 117 ++ I + P L LA F PG P+ L + + T + T Sbjct: 68 VLLASIDDIDSLGLDLPAPLNRLAAAFMPGAFSPIALARPDCTLATVRKTPTGTM-TQGV 126 Query: 118 RVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 R+P I PLA SANRSG S V+ + + + + L +DGG + + Sbjct: 127 RIPNSTASLRILRATGPLAASSANRSGGESAQTVQEAVQA-LGDSVDLYLDGGATPGHVS 185 Query: 178 STIV--NVQCEKKVRILRPGGLEIETLKRAISV 208 ST+V + + ILR G + + +A+ + Sbjct: 186 STVVEADPHSRDGIAILREGIIGQNAIHQALHI 218 >gi|284053293|ref|ZP_06383503.1| Sua5/YciO/YrdC/YwlC family protein [Arthrospira platensis str. Paraca] Length = 275 Score = 165 bits (418), Expect = 9e-39, Method: Composition-based stats. Identities = 47/199 (23%), Positives = 85/199 (42%), Gaps = 13/199 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + L G + PT+TVY + D +A++++ +IK+ PL S +S + Sbjct: 70 IEQINDALKRGAVMLYPTDTVYAIGCDLTVKSAVQKVRQIKQISNDKPLTFLCSSLSNIA 129 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKKLIE 129 +A V + K PG T VL +T + L + KT RVP ++E Sbjct: 130 DYAIVTDEAYRTIKKLIPGSYTFVLP--ATKQVPKLVMSPKRKTTGIRVPDHPVCLAILE 187 Query: 130 TYGHPLAIPSANRSGQISIT---------NVKHILSSSICKEIPLIIDGGISKIGLESTI 180 + G+P+ SA+ + + K L ++ + +I+D G STI Sbjct: 188 SLGNPVISTSAHIKEEDEPSALIRKIPQNYDKFQLFDALENLVDIIVDDGADLDYQVSTI 247 Query: 181 VNVQCEKKVRILRPGGLEI 199 +++ + V + R G E Sbjct: 248 IDLSADDPVLVRRGKGWEA 266 >gi|320096084|ref|ZP_08027684.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 178 str. F0338] gi|319976964|gb|EFW08707.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 178 str. F0338] Length = 228 Score = 165 bits (418), Expect = 9e-39, Method: Composition-based stats. Identities = 61/212 (28%), Positives = 89/212 (41%), Gaps = 5/212 (2%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 L KA +G + IPT+TVYG+ D+ NP A+ RL +K R P V+D V Sbjct: 21 DLDKARLAAASGALLVIPTDTVYGIGADAANPGAVARLLAVKGRGRQMPPPVLVADADAV 80 Query: 71 KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129 + V + LA+ WPGPLTLVL T T RVP + Sbjct: 81 DRLCEDVPEAARRLARAHWPGPLTLVLRARDGLGWDLGDTGG--TIALRVPDHPGALALL 138 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+A+ SAN +G+ T + + + + L D G + ST+V Sbjct: 139 RATGPMAVTSANTTGRPPATTIDQAV-AYFGGAVDLYADAGPTASSTPSTVVAFAG-GAA 196 Query: 190 RILRPGGLEIETLKRAISVELEYCVDETSTPQ 221 R+LR G L ++ + +E E E + Sbjct: 197 RVLRHGALGVDDIAALAPLEAEGRAGEGGNAR 228 >gi|298488128|ref|ZP_07006165.1| predicted RNA-binding protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157407|gb|EFH98490.1| predicted RNA-binding protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330989191|gb|EGH87294.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas syringae pv. lachrymans str. M301315] Length = 209 Score = 165 bits (418), Expect = 9e-39, Method: Composition-based stats. Identities = 48/190 (25%), Positives = 85/190 (44%), Gaps = 6/190 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E + AG + PT++ Y L + +AI R+ +++ + D+S Sbjct: 14 PRLIKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKK 126 + A VD + K PGP T +L+ +T ++ L +T RVP + Sbjct: 74 QLGLFAKVDTGAFRALKAHTPGPYTFILN--ATREVPRLVLHPKRRTIGLRVPSHPIAQA 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+E G PL S G + + + + ++ LIIDGGI I ST++N+ Sbjct: 132 LLEQLGEPLMSVSLIMPGDTVPLSDPYEMRQILEHQVDLIIDGGIGGIS-ASTVINLAGG 190 Query: 187 KKVRILRPGG 196 + ++R G Sbjct: 191 EP-EVVRVGC 199 >gi|194881657|ref|XP_001974938.1| GG20842 [Drosophila erecta] gi|190658125|gb|EDV55338.1| GG20842 [Drosophila erecta] Length = 251 Score = 165 bits (418), Expect = 9e-39, Method: Composition-based stats. Identities = 66/199 (33%), Positives = 99/199 (49%), Gaps = 9/199 (4%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 + + D ALR A + L +G IA+PT+TVYGLA D+ N TAI+RLYEIK R P+ Sbjct: 35 VCPVGDEAALRLARQCLLSGQVIALPTDTVYGLACDANNETAIQRLYEIKGRDEHKPVAI 94 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC- 121 V +I +++ LS L PGPLT+V++ + L+ + K R+P Sbjct: 95 CVHNIEALRRFGQAVHLSDELLTRLLPGPLTIVIERTAQLSNRFLNPSTSK-IGIRIPDF 153 Query: 122 GFTKKLIETYG-HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI----SKIGL 176 F + L + PLA+ SANRS S V S+ ++ + D G + L Sbjct: 154 NFMRDLCAVWHEQPLALTSANRSSAPSSLQVSE--FRSLWPQLGAVFDAGQIGLTEERRL 211 Query: 177 ESTIVNVQCEKKVRILRPG 195 ST++++ I+R G Sbjct: 212 ASTVIDLATPGYFEIVRAG 230 >gi|34497149|ref|NP_901364.1| hypothetical protein CV_1694 [Chromobacterium violaceum ATCC 12472] gi|34103006|gb|AAQ59369.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 207 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 48/193 (24%), Positives = 80/193 (41%), Gaps = 14/193 (7%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEI-----KKRPAMNPLICH 63 + +R+A + L G IA PT++ Y L + A+ R+ EI K+R + L+CH Sbjct: 14 ARLIREAVKILREGGVIAYPTDSCYALGCALGDKEAMERILEIRGVDLKQR--LMTLVCH 71 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 D+S + +A VD L K PG T +L L T RVP Sbjct: 72 --DLSELANYAKVDNRQYRLLKSTTPGSYTFILQATREVPRRTL-HPKRATIGLRVPDHK 128 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 L+E G P+ + G + + + + + ++DGG +T+V+ Sbjct: 129 VALALLEELGEPILSCTLMLPGDDVPMSDPYEIRERLEHLVDAVLDGGWCGT-EPTTVVD 187 Query: 183 VQCEKKVRILRPG 195 + V ++R G Sbjct: 188 MTDG--VELVREG 198 >gi|326431169|gb|EGD76739.1| yrdC domain-containing protein [Salpingoeca sp. ATCC 50818] Length = 388 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 61/201 (30%), Positives = 101/201 (50%), Gaps = 10/201 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 + + A E L AG I +PT+T+YGLA +++ +RR+Y IK R + P+ V D+ Sbjct: 97 PDDVVADAVETLRAGGVIGVPTDTIYGLACLAQSTQGVRRIYSIKGRSELKPIAICVHDV 156 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKK 126 + + +A + + L + PGP+T+VL ++P + RVP F +K Sbjct: 157 AAIGAYAELS-VPERLLRALLPGPVTVVLPRKPA--LNPELNPHTSLIGVRVPDFPFVRK 213 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE----STIVN 182 L++ G PLA+ SANRSG+ S + S + E+ + D G + ST+V+ Sbjct: 214 LVQALGEPLALTSANRSGEQSCISSSE--FSHLWGELNAVYDAGTIETSGASRLGSTVVD 271 Query: 183 VQCEKKVRILRPGGLEIETLK 203 + K +++R G E TL Sbjct: 272 LSRGKAYQVIRGGSAEEATLA 292 >gi|269119268|ref|YP_003307445.1| Sua5/YciO/YrdC/YwlC family protein [Sebaldella termitidis ATCC 33386] gi|268613146|gb|ACZ07514.1| Sua5/YciO/YrdC/YwlC family protein [Sebaldella termitidis ATCC 33386] Length = 209 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 58/204 (28%), Positives = 94/204 (46%), Gaps = 13/204 (6%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 ++++ L PT+TVYG+ NP I R+YE K+R P+I +SD Sbjct: 6 ISEESVQEIVSCLKNNGIAIFPTDTVYGIGAVYNNPEGIDRIYEAKQRDRSKPIIALISD 65 Query: 67 ISMVKKHASVDPLSL----HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 IS + K S + L + K +WPG LT+V D + A T R+P Sbjct: 66 ISHLHKLISFEEEDLGNISEIMKKYWPGELTIVFDNSK------YNVAEDNTIGVRIPGD 119 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 ++IE+ G + SAN SG+ S + +S I ++ I+DGG G+ ST++ Sbjct: 120 EILLRIIESCGGIVFTTSANISGEKSPVKTQD-ISYDILEKTDFILDGGTILNGVPSTVI 178 Query: 182 NVQCEKKVRILRPGGLEIETLKRA 205 K+ +LR G ++ + + Sbjct: 179 K-YSAGKISVLREGNIKTGEILKL 201 >gi|330983264|gb|EGH81367.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 189 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 42/167 (25%), Positives = 73/167 (43%), Gaps = 4/167 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E + AG + PT++ Y L + +AI R+ +++ + D+S Sbjct: 25 PRLIKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLS 84 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKK 126 + A VD + K PGP T +L+ +T ++ L +T RVP + Sbjct: 85 QLGLFAKVDTGAFRALKAHTPGPYTFILN--ATREVPRLVLHPKRRTIGLRVPSHPIAQA 142 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173 L+E G PL S G + + + + ++ LIIDGGI Sbjct: 143 LLEQLGEPLMSVSLIMPGDSVPLSDPYEMRQILEHQVDLIIDGGIGG 189 >gi|257482786|ref|ZP_05636827.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 222 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 48/190 (25%), Positives = 85/190 (44%), Gaps = 6/190 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E + AG + PT++ Y L + +AI R+ +++ + D+S Sbjct: 27 PRLIKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLS 86 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKK 126 + A VD + K PGP T +L+ +T ++ L +T RVP + Sbjct: 87 QLGLFAKVDTGAFRALKAHTPGPYTFILN--ATREVPRLVLHPKRRTIGLRVPSHPIAQA 144 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+E G PL S G + + + + ++ LIIDGGI I ST++N+ Sbjct: 145 LLEQLGEPLMSVSLIMPGDSVPLSDPYEMRQILEHQVDLIIDGGIGGIS-ASTVINLAGG 203 Query: 187 KKVRILRPGG 196 + ++R G Sbjct: 204 EP-EVVRVGC 212 >gi|50759736|ref|XP_417757.1| PREDICTED: similar to MGC97806 protein [Gallus gallus] Length = 255 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 56/201 (27%), Positives = 97/201 (48%), Gaps = 12/201 (5%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 A+ A L G +A+PT+TVYG+A +++ A++ +Y +K R PL + D+ Sbjct: 47 EAVAAAVGALQEGGLVAVPTDTVYGVACLAQDSRAVQSIYSLKGRNGTKPLAICLGDVEH 106 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + ++ V+ + L + PGP+TLVL + +++ R+P F ++L Sbjct: 107 IYRYCHVN-VPDELLQDLLPGPVTLVLKR--SEELNKDLNPFTSLVGVRIPNHPFIRELA 163 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI------SKIGLESTIVN 182 PLA+ SAN S Q S V + ++ L++DGG + L ST+V+ Sbjct: 164 RACPGPLALTSANVSSQASTLTVSE--FQDLWPQLSLVVDGGPIGDVQSPECRLGSTVVD 221 Query: 183 VQCEKKVRILRPGGLEIETLK 203 + K I+RPG T++ Sbjct: 222 LSVSGKFTIIRPGCALTSTVE 242 >gi|134095363|ref|YP_001100438.1| hypothetical protein HEAR2179 [Herminiimonas arsenicoxydans] gi|133739266|emb|CAL62315.1| Conserved hypothetical protein, putative translation factor [Herminiimonas arsenicoxydans] Length = 207 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 46/200 (23%), Positives = 81/200 (40%), Gaps = 7/200 (3%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 Q I N + +A E + G +A+PT++ Y L + A+ RL I+ Sbjct: 3 QFFQIHPENPQARLISQAVEVIKGGGIVALPTDSCYALVCQLDDKDAVARLRRIRNVDDK 62 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 + L D+S + ++A +D L K PG T +L+ LS + KT Sbjct: 63 HHLTLLCRDLSEIAQYAKIDNQQYRLLKAATPGAYTFILEATKEVP-RRLSHPSRKTIGL 121 Query: 118 RVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 RVP ++E PL + G+ + + K + L+IDGG + Sbjct: 122 RVPENRIVHAVLEELAQPLLGTTLILPGEDEPLTDPDDVRDRLSKVVDLVIDGGACSF-I 180 Query: 177 ESTIVNVQCEKKVRILRPGG 196 +T++++ + V + G Sbjct: 181 PTTVIDLTGPEPVLQRQGRG 200 >gi|119469322|ref|ZP_01612261.1| putative RNA binding protein with YrdC/RibB domain [Alteromonadales bacterium TW-7] gi|119447186|gb|EAW28455.1| putative RNA binding protein with YrdC/RibB domain [Alteromonadales bacterium TW-7] Length = 206 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 44/196 (22%), Positives = 76/196 (38%), Gaps = 4/196 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A + + G + PT++ Y + + N A R+ I+ + D+S Sbjct: 14 ARLITQAVDIIKQGGVVVYPTDSGYAIGCNIGNKQAKERIERIRGIDKNDNFTLVCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGFTKKL 127 + +A VD L K PGP T + L KT RV L Sbjct: 74 ELSTYARVDNQLFRLIKNNTPGPYTFIFKGTKEVP-KRLLNDKKKTIGIRVIEHPIACAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL S GQ + + + K + LII GG +T++++ + Sbjct: 133 LAELGEPLMSCSLILPGQEFTESDPDEILDRLDKHVDLIIHGGYLPE-QATTVIDLSEDD 191 Query: 188 KVRILRPGGLEIETLK 203 V+ILR G ++ + Sbjct: 192 -VKILRVGCGDVSPFE 206 >gi|251789771|ref|YP_003004492.1| Sua5/YciO/YrdC/YwlC family protein [Dickeya zeae Ech1591] gi|247538392|gb|ACT07013.1| Sua5/YciO/YrdC/YwlC family protein [Dickeya zeae Ech1591] Length = 206 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 41/188 (21%), Positives = 69/188 (36%), Gaps = 4/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + E L G I PT++ Y L + A+ R+ I+ + D+S Sbjct: 14 PRLINQTVEILRKGGVIVYPTDSGYALGCMLEDKAAMERICRIRSLDQNHNFTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD + L K PG T +L L KT RVP +L Sbjct: 74 ELSSYAYVDNAAFRLIKNNTPGNYTFILKATKEVP-RRLMNEKRKTIGMRVPSNPIALEL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + PL + G + + + K + L+I GG +T++++ Sbjct: 133 LAVLNEPLMSTTLMLPGNDFAESDPEEIQERLGKLVDLVIHGGFLGQ-QPTTVIDLTESV 191 Query: 188 KVRILRPG 195 V + R G Sbjct: 192 PV-VAREG 198 >gi|9759323|dbj|BAB09832.1| unnamed protein product [Arabidopsis thaliana] Length = 239 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 64/193 (33%), Positives = 100/193 (51%), Gaps = 4/193 (2%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 ++A E + + IA+PT+T+YG A D+ + A+ R+YEIK R +PL V D+ +K+ Sbjct: 28 QEAIEAIKSEKVIAVPTDTLYGFACDACSLEAVSRIYEIKGRKLTSPLAICVGDVLDIKR 87 Query: 73 HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETY 131 A+ L L PGP+TLVL ++ + + T RVP C F +++ Sbjct: 88 VATTSHLPHGLLDSLLPGPVTLVLQRGESSILEKSLNPGIGTIGVRVPDCEFIREVSRGS 147 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKKVR 190 G LA+ SAN SG S VK ++ + + DGG+ G STIV++ K + Sbjct: 148 GSVLALTSANLSGDRSSVCVKD--FENLWQHCAYVYDGGLLPSGRAGSTIVDLTKVGKYK 205 Query: 191 ILRPGGLEIETLK 203 I+RPG + T+ Sbjct: 206 IIRPGSAKQATVA 218 >gi|283788082|ref|YP_003367947.1| hypothetical protein ROD_45391 [Citrobacter rodentium ICC168] gi|282951536|emb|CBG91235.1| conserved hypothetical protein [Citrobacter rodentium ICC168] Length = 190 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 49/187 (26%), Positives = 77/187 (41%), Gaps = 8/187 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 ++++ A E L+ IA PTE V+G+ D + TA+ RL +K+RP LI + Sbjct: 6 PTDSIAAAVEVLNNENVIAYPTEAVFGVGCDPDSETAVNRLLALKQRPVDKGLILIAASF 65 Query: 68 SMVKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 +K + L+ + WPGP+T V +TT T + RV Sbjct: 66 DQLKPYIDDSMLTEARREAVFARWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPL 123 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 L E YG PL SAN SG + + + + P+++ G S I + Sbjct: 124 VVALCEAYGKPLVSTSANLSGLPPCRTTEEV-RAQFGDDFPVVV-GETGGRLNPSEIRDA 181 Query: 184 QCEKKVR 190 + R Sbjct: 182 LTGELFR 188 >gi|239993815|ref|ZP_04714339.1| Sua5/YciO/YrdC/YwlC family protein [Alteromonas macleodii ATCC 27126] Length = 206 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 44/189 (23%), Positives = 75/189 (39%), Gaps = 3/189 (1%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +ACE + G + PT++ Y + + A+ +L I++ + D+S Sbjct: 14 KRLISQACELIREGAVVVYPTDSGYAIGCQMEDKKALEQLCRIRQIDKDHNFTLMCRDMS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD + K PG T VL L KT RVP L Sbjct: 74 ELSIYAKVDNTAFRQIKNNTPGRYTFVLKATREVP-KRLQNPKRKTIGIRVPDNAIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL S G + ++ ++ K++ LII GG +T+V++ + Sbjct: 133 LEELGEPLMSTSLILPGNTMAESDPDVIRDNLEKQVGLIIHGGYIGE-QPTTVVDLSEDT 191 Query: 188 KVRILRPGG 196 V + G Sbjct: 192 PVIVRHGTG 200 >gi|73540803|ref|YP_295323.1| Sua5/YciO/YrdC/YwlC [Ralstonia eutropha JMP134] gi|72118216|gb|AAZ60479.1| Sua5/YciO/YrdC/YwlC [Ralstonia eutropha JMP134] Length = 207 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 44/188 (23%), Positives = 78/188 (41%), Gaps = 4/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A + + G IA+PT++ Y L + A+ RL ++ + L SD+S Sbjct: 14 PRLIKQAVQIIRQGGLIALPTDSSYALGCQLDDKAAVERLRRLRGIDDKHHLTLMCSDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + A VD K PGP +L+ LS + KT RVP L Sbjct: 74 ELGSFARVDNRQYRWIKGATPGPYVFILEATKEVP-RRLSHPSRKTIGVRVPEHAIPLAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + G N + + + K + L+I GG + +T++++ + Sbjct: 133 LADAGEPLLTATLQLPGDEEPMNDPAEIRARLEKLLDLVICGGPAPA-QPTTVIDLTSGE 191 Query: 188 KVRILRPG 195 ++R G Sbjct: 192 P-ELVRQG 198 >gi|329119555|ref|ZP_08248239.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria bacilliformis ATCC BAA-1200] gi|327464342|gb|EGF10643.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria bacilliformis ATCC BAA-1200] Length = 206 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 41/188 (21%), Positives = 73/188 (38%), Gaps = 5/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +R+ + + G A PT++ Y L + A+ R+ I+K + L +D++ Sbjct: 14 ERLIRQVAQIVRGGGVAAYPTDSCYALGCRLGDKEAMERILRIRKIDLKHHLTLMCADLA 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD + K PG T +L L KT RVP L Sbjct: 74 ELGTYAKVDNAQFRMLKAATPGSYTFILQATKEVPNRTL-HPKRKTIGLRVPDNAVALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + + + + + + L+IDGG +T+V++ Sbjct: 133 LRELGEPLLSCTLMLPEDSEPLSDPYEIRDRLEHAVDLVIDGGWCGT-EPTTVVDMTDG- 190 Query: 188 KVRILRPG 195 V ++R G Sbjct: 191 -VTLVREG 197 >gi|306823415|ref|ZP_07456790.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium dentium ATCC 27679] gi|309802724|ref|ZP_07696828.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium dentium JCVIHMP022] gi|304553122|gb|EFM41034.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium dentium ATCC 27679] gi|308220788|gb|EFO77096.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium dentium JCVIHMP022] Length = 220 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 66/213 (30%), Positives = 104/213 (48%), Gaps = 8/213 (3%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 ++ +ITD + L +A E + G I IPT+TVYG+A D RN AIR++Y +K+RP PL Sbjct: 3 EVRTITDES-LAQAVEIIRDGGLIVIPTDTVYGVACDPRNVEAIRKIYMVKQRPKYKPLQ 61 Query: 62 CHVSDISMVKKHASVDPLSL-HLAKLFWPG---PLTLVLDLLSTTDIHPLSTANLKTACF 117 ++ I + P+ L LA +F PG P+ D S + T Sbjct: 62 VLLASIDGLDALRLDLPVPLNRLAAMFMPGAFSPIAEARDNCSLATVRRDPATGKTTQGV 121 Query: 118 RVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 R+P I PLA SANRSG+ S V + ++ + L +DGG + + Sbjct: 122 RIPNSAATLRILRAVGPLAATSANRSGEESAQTVDEAV-EALGDAVDLYLDGGATPGHVS 180 Query: 178 STIV--NVQCEKKVRILRPGGLEIETLKRAISV 208 ST+V + + ILR G + +++A+++ Sbjct: 181 STVVAADPHGRDGISILREGVIREAVIRKALTL 213 >gi|212277729|sp|B3PGZ1|RIMN_CELJU RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN Length = 189 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 39/179 (21%), Positives = 70/179 (39%), Gaps = 5/179 (2%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A + G IA PTE V+GL + + A+ L +K+RP +I +++ ++ Sbjct: 13 AANMMRQGGVIAYPTEAVWGLGCNPFDEDAVADLLALKQRPVEKGVILIAANLQQIEPFI 72 Query: 75 S-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYG 132 +D L K WPGP+T ++ T + RV L +G Sbjct: 73 DHLDDLQRQRLKNTWPGPVTWLVPN--NGLAPHWITGAFPSVALRVTDHPVAAGLCRAFG 130 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 P+ S N +G+ N+ + ++ + G + S I ++ + VR Sbjct: 131 GPVVSTSCNPAGKPPARNIHEV-RRYFGGQLDAVSSGLAGRRTNPSEIRDLLTGQVVRP 188 >gi|209694705|ref|YP_002262633.1| hypothetical protein VSAL_I1156 [Aliivibrio salmonicida LFI1238] gi|208008656|emb|CAQ78841.1| conserved hypothetical protein [Aliivibrio salmonicida LFI1238] Length = 206 Score = 164 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 41/196 (20%), Positives = 73/196 (37%), Gaps = 4/196 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A + G I PT++ Y L N A+ R+ +I++ + D+S Sbjct: 14 ARLISQAVAIIRDGGVIIYPTDSGYALGCQIENKQALERICQIRRLDDKHNFTLVCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD L K PG T + L KT RVP L Sbjct: 74 ELSIYARVDNTMFRLLKNNTPGAYTFIFKGTKEVP-RRLMNPKRKTIGMRVPDNKIALDL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL + G + + + LI++GG +T+++ + Sbjct: 133 LEALGEPLMSTTLILPGNEMAEADPEAIRDQLEHAVDLIMNGGYLGE-QPTTVIDFSDDD 191 Query: 188 KVRILRPGGLEIETLK 203 ++I R G + + Sbjct: 192 -IKIARVGAGDPSPFE 206 >gi|90412190|ref|ZP_01220196.1| putative translation factor [Photobacterium profundum 3TCK] gi|90326914|gb|EAS43299.1| putative translation factor [Photobacterium profundum 3TCK] Length = 206 Score = 164 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 38/189 (20%), Positives = 73/189 (38%), Gaps = 4/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A + G + PT++ Y L N A+ R+ +I++ + D+S Sbjct: 14 ARLMTQAVAIIRNGGVVVYPTDSGYALGCQLENKQALERICQIRRLNDKHNFTLLCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD + L + PG T + L KT R+P L Sbjct: 74 EIANYARVDNAAFRLLRSNTPGAYTFIFKGTKEVP-RRLMNPKRKTIGIRIPDNAIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL S + + + + LI++GG +T+++ ++ Sbjct: 133 LEELGEPLMSTSLILPNSDVAESDPEDIRDKLEHAVDLIMNGGYLGE-QPTTVIDFSNDE 191 Query: 188 KVRILRPGG 196 + +LR G Sbjct: 192 -MEVLRVGA 199 >gi|46198747|ref|YP_004414.1| sua5 protein [Thermus thermophilus HB27] gi|55980762|ref|YP_144059.1| hypothetical protein TTHA0793 [Thermus thermophilus HB8] gi|46196370|gb|AAS80787.1| sua5 protein [Thermus thermophilus HB27] gi|55772175|dbj|BAD70616.1| conserved hypothetical protein [Thermus thermophilus HB8] Length = 195 Score = 164 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 57/198 (28%), Positives = 94/198 (47%), Gaps = 17/198 (8%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 AL KA E L G +A PT+TV+G+ + A +R+YE+K RP PL V+D+ Sbjct: 6 QEALAKAAETLKGGGLVAFPTDTVWGVLALMEDEAACKRIYEVKGRPEDKPLQVLVADLE 65 Query: 69 MVKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 + + PL L LA+ FWPG LT+V+ + I P + + + R+P Sbjct: 66 SALELVDLGPLEGKFLRLAEAFWPGGLTVVVPGKA---IPPWISKD-GSVGLRMPDHALL 121 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 ++L+ G A S N+SG+ + + + + + G GL S++V+++ Sbjct: 122 RELLRRVGGHAAATSLNKSGEPPVRTEAEARTFA----VDFVFPGE--AGGLASSVVDLR 175 Query: 185 CEKKVRILRPGGLEIETL 202 +LR G + E L Sbjct: 176 TG---EVLREGAIPKEAL 190 >gi|288905238|ref|YP_003430460.1| translation factor (SUA5) [Streptococcus gallolyticus UCN34] gi|288731964|emb|CBI13529.1| Putative translation factor (SUA5) [Streptococcus gallolyticus UCN34] Length = 199 Score = 164 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 62/191 (32%), Positives = 90/191 (47%), Gaps = 8/191 (4%) Query: 18 FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77 L G + +PTETVYGL N A+ +Y++K+RP + +V+D + + Sbjct: 7 ILQNGGAVILPTETVYGLFAQVMNEKAVEHVYQLKRRPKDKAMNLNVADFETILAFSKQQ 66 Query: 78 PLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPL 135 P L L F PGPLT++L + + + L T FR+P T KLI+ G PL Sbjct: 67 PSYLKKLYDAFLPGPLTIILQ--ANDRVPAWINSGLSTIGFRIPNHPQTLKLIKKAG-PL 123 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 PSAN SGQ S K I D ++ G++STI+++ K RILR G Sbjct: 124 IGPSANISGQESGKVFKEIQKQFGGTVTGFADDAALT--GVDSTILDLSG-KTARILRQG 180 Query: 196 GLEIETLKRAI 206 + L + Sbjct: 181 AITQNDLLAVV 191 >gi|114050899|ref|NP_001040163.1| ischemia/reperfusion inducible protein [Bombyx mori] gi|87248253|gb|ABD36179.1| ischemia/reperfusion inducible protein [Bombyx mori] Length = 274 Score = 164 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 62/222 (27%), Positives = 108/222 (48%), Gaps = 10/222 (4%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 ++S D A +A E L G IA+PT+T+YGLA + P AI++LY IK R A+ P+ Sbjct: 46 VISCVDFTASLRAAECLAKGQVIAVPTDTIYGLACSANCPLAIKKLYSIKGREAVKPVAI 105 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 V+ ++ ++K +S L PGP+T+VL D +P + R+P Sbjct: 106 CVTSVADLRKWGEASHISDKLLDSLLPGPVTVVLQKTKHLD-NPFLNPSTTKIGIRIPKH 164 Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE---- 177 F + + + P+A+ SAN S + S ++K + + I DGG+ GLE Sbjct: 165 DFMNTVTKIFDMPVALTSANFSNEPSTLSIKE--FEHLYPHLAAIFDGGLLSQGLEQNRT 222 Query: 178 -STIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETS 218 ST++++ +I+R G + + + + + +E+ Sbjct: 223 GSTVIDLSKNGLYKIIRKG-ISYDNVIKVVERYGLKKNNESE 263 >gi|329945874|ref|ZP_08293561.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328528322|gb|EGF55300.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 246 Score = 164 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 65/222 (29%), Positives = 101/222 (45%), Gaps = 16/222 (7%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +AL+ ACE L AG + +PT+TVYG+ ++ + A+ RL K R P V+ + Sbjct: 20 DALQPACEHLRAGGLVILPTDTVYGIGCNAADAGAVERLLASKGRGRQMPPPVLVAGPAD 79 Query: 70 VKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + P + L + FWPGPLTL+LD + T+ T R+P L Sbjct: 80 LTGVVAQVPEAARILMEAFWPGPLTLILDADAALTWDLGETSG--TIAIRMPDHELALDL 137 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILS---------SSICKEIPLIIDGGISKIGLES 178 + G PLA+ SAN +G T+ + ++ E L++DGG + + S Sbjct: 138 LRRSG-PLAVTSANPTGAPPATDAASARAAFPGRVRGVDAVGTEDILLLDGGATSGPVPS 196 Query: 179 TIVNVQCEK--KVRILRPGGLEIETLKRAISVELEYCVDETS 218 TIV + RILR G L L+R V + + + Sbjct: 197 TIVTLAGAHACSPRILRKGVLSPADLERVAGVNVAEQTAQAT 238 >gi|254481766|ref|ZP_05095009.1| Sua5/YciO/YrdC/YwlC family protein [marine gamma proteobacterium HTCC2148] gi|214037895|gb|EEB78559.1| Sua5/YciO/YrdC/YwlC family protein [marine gamma proteobacterium HTCC2148] Length = 207 Score = 164 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 46/196 (23%), Positives = 86/196 (43%), Gaps = 4/196 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +R+A + + AG + PT++ Y + + A+ R+ I+K + D+S Sbjct: 14 ARLVRQAVDIIRAGGVVVYPTDSAYAIGCHIGDKNALDRIRRIRKLADRHNFTLVCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 + ++ VD + K PGP T +L S L A KT RVP T+ L Sbjct: 74 EIATYSRVDNADYRMLKACTPGPYTFILKATSEVP-RRLMHAKRKTVGLRVPDNNITQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G P+ + G + + ++ ++ L+IDGG + +T+V++ E Sbjct: 133 LTDLGEPMMSVTLIMPGDEYPLIDPYDIRETLQHDVDLVIDGGYCGM-EATTVVDLVDET 191 Query: 188 KVRILRPGGLEIETLK 203 + +LR G +I + Sbjct: 192 PL-VLRAGKGDIAPFE 206 >gi|54309647|ref|YP_130667.1| putative translation factor [Photobacterium profundum SS9] gi|46914085|emb|CAG20865.1| putative translation factor [Photobacterium profundum SS9] Length = 206 Score = 164 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 38/189 (20%), Positives = 74/189 (39%), Gaps = 4/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A + G + PT++ Y L N A+ R+ +I++ + D+S Sbjct: 14 ARLMTQAVAIIRNGGVVVYPTDSGYALGCQLENKQALERICQIRRLNDKHNFTLLCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD + L + PG T + L + KT R+P L Sbjct: 74 EIANYARVDNAAFRLLRSNTPGAYTFIFKGTKEVP-RRLMSPKRKTIGIRIPNNAIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL S + + + + LI++GG +T+++ ++ Sbjct: 133 LEELGEPLMSTSLILPNSDVAESDPEDIRDKLEHAVDLIMNGGYLGE-QPTTVIDFSNDE 191 Query: 188 KVRILRPGG 196 + +LR G Sbjct: 192 -MEVLRVGA 199 >gi|332533672|ref|ZP_08409531.1| Sua5 YciO YrdC YwlC family protein [Pseudoalteromonas haloplanktis ANT/505] gi|332036836|gb|EGI73297.1| Sua5 YciO YrdC YwlC family protein [Pseudoalteromonas haloplanktis ANT/505] Length = 187 Score = 164 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 7/189 (3%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 ++D + A L G I PTE VYGL D N A+ L IK+RP LI Sbjct: 1 MSDLSNTPTAITCLTQGEVILYPTEAVYGLGCDPDNQQAVEALLAIKQRPVEKGLILIAD 60 Query: 66 DISMVKKHASVDPLSLH-LAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 + + K+ + + A +F WP +T V+ ++ + T T RV Sbjct: 61 NYGQLLKYVDDAKIPMDKRADIFSSWPAAITWVMP--ASKNTPKWLTGQFDTIAVRVTNH 118 Query: 123 F-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 K+L + +G PL SAN +GQ ++ +++ + +++ +D + STI Sbjct: 119 PTVKRLCQEFGKPLVSTSANLTGQETVISIEQA-KAQFAEQVGFYVDEPLGGNTQPSTIK 177 Query: 182 NVQCEKKVR 190 + K R Sbjct: 178 DAMTGKIFR 186 >gi|70728990|ref|YP_258724.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas fluorescens Pf-5] gi|68343289|gb|AAY90895.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas fluorescens Pf-5] Length = 217 Score = 164 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 44/189 (23%), Positives = 79/189 (41%), Gaps = 4/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E + G + PT++ Y +A + AI R+ +++ + SD+S Sbjct: 22 PRLIKQAVEIIRGGGVVIYPTDSSYAVACQMGDKGAIERVRRLRQLDDKHNFALICSDLS 81 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + A +D + L K PGP T +L+ L +T RVP L Sbjct: 82 QLGLFAKIDTGTFRLLKAHVPGPYTFILNATREVP-RLLLHPKRRTIGLRVPSNPIALAL 140 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL S G + + + + ++ LIIDGG ST++N+ + Sbjct: 141 LAELGEPLMSVSLIMPGDTEALSDPYEMRQLLEHQVDLIIDGGFGST-ESSTVINL-ADG 198 Query: 188 KVRILRPGG 196 + ++R G Sbjct: 199 EPEVIRVGC 207 >gi|332140784|ref|YP_004426522.1| Sua5/YciO/YrdC/YwlC family protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327550806|gb|AEA97524.1| Sua5/YciO/YrdC/YwlC family protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 206 Score = 164 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 45/190 (23%), Positives = 77/190 (40%), Gaps = 5/190 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +ACE + G + PT++ Y + + A+ +L I++ + D+S Sbjct: 14 KRLISQACELIRDGAVVVYPTDSGYAIGCQMEDKKALEQLCRIRQIDKDHNFTLMCRDMS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD + K PG T VL L KT RVP L Sbjct: 74 ELSIYAKVDNTAFRQIKNNTPGHYTFVLKATREVP-KRLQNPKRKTIGIRVPDNAIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL-ESTIVNVQCE 186 +E G PL S G + ++ ++ K++ LII GG IG +T++++ + Sbjct: 133 LEELGEPLMSTSLILPGNTMAESDPDVIRDNLEKQVGLIIHGGY--IGEHPTTVIDLSDD 190 Query: 187 KKVRILRPGG 196 V + G Sbjct: 191 TPVIMRHGTG 200 >gi|297626234|ref|YP_003687997.1| Sua5/YciO/YrdC/YwlC [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921999|emb|CBL56561.1| Sua5/YciO/YrdC/YwlC [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 292 Score = 164 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 61/193 (31%), Positives = 97/193 (50%), Gaps = 5/193 (2%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL-SLHL 83 I +PT+TVYG+ D+ + A++ L K R P +++ +M+ S PL + + Sbjct: 60 IVLPTDTVYGIGADAFSADAVQGLLNAKHRGRDMPPPVLIAEPAMLPALVSSIPLGAERM 119 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRS 143 K WPG LTL+L+ + T +H T RVP + + + PLA+ SAN S Sbjct: 120 IKECWPGALTLILN--AATALHMDLGETAGTIAVRVPDNDDARALLLHTGPLAVSSANIS 177 Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203 GQ S T+V + + + + + +DGG + + STIV+ RILR G + + L+ Sbjct: 178 GQPSATDVGAAI-AMLGDSVAVYLDGGRTPGPVASTIVDFTVSPAGRILRQGVIGFDQLE 236 Query: 204 RAISVELEYCVDE 216 +S LE V E Sbjct: 237 G-LSPGLEDLVTE 248 >gi|225010857|ref|ZP_03701325.1| Sua5/YciO/YrdC/YwlC family protein [Flavobacteria bacterium MS024-3C] gi|225005065|gb|EEG43019.1| Sua5/YciO/YrdC/YwlC family protein [Flavobacteria bacterium MS024-3C] Length = 206 Score = 164 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 54/209 (25%), Positives = 89/209 (42%), Gaps = 13/209 (6%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 Q++ I +N AL K L G I PT+TVYG+ D N A+ +L ++K Sbjct: 3 QLIKIYPNNPQEAALEKVVRALRDGALIIYPTDTVYGIGCDITNNKALEKLAKLKGVKLE 62 Query: 58 NPL-ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115 +D+S + + +D + + K PGP T VL + P + KT Sbjct: 63 KATWSFICADLSNISDYVKQIDTATFKILKRSLPGPYTFVLPGNNNL---PKAFKKRKTI 119 Query: 116 CFRVPCG-FTKKLIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGGISK 173 RVP KK++E G+P+ S ++ T ++ + +IDGG Sbjct: 120 GIRVPDHSIPKKIVEMLGNPIVSTSIYDPDEVLEYTTDPELIFEKWSPHVAFVIDGGYGD 179 Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIETL 202 + STIV++ + ++R G + L Sbjct: 180 -NVPSTIVDLSGDSP-ELIRRGKGNFDLL 206 >gi|331012312|gb|EGH92368.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 209 Score = 164 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 48/190 (25%), Positives = 85/190 (44%), Gaps = 6/190 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E + AG + PT++ Y L + +AI R+ +++ + D+S Sbjct: 14 PRLIKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKK 126 + A VD + K PGP T +L+ +T ++ L +T RVP + Sbjct: 74 QLGLFAKVDTGAFRALKAHTPGPYTFILN--ATREVPRLVLHPKRRTIGLRVPSHPIAQA 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+E G PL S G + + + + ++ LIIDGGI I ST++N+ Sbjct: 132 LLEQLGEPLMSVSLIMPGDSVPLSDPYEMRQILEHQVDLIIDGGIGGIS-ASTVINLAGG 190 Query: 187 KKVRILRPGG 196 + ++R G Sbjct: 191 EP-EVVRVGC 199 >gi|331092924|ref|ZP_04587538.2| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021931|gb|EGI01988.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 209 Score = 164 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 51/190 (26%), Positives = 86/190 (45%), Gaps = 6/190 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E + AG + PT++ Y L + +AI R+ +++ + D+S Sbjct: 14 PRLIKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKK 126 + A VD + K PGP T +L+ +T ++ L +T RVP + Sbjct: 74 QLGLFAKVDTGAFRALKAHTPGPYTFILN--ATREVPRLVLHPKRRTIGLRVPSHPIAQA 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+E G PL S G + + + + + LIIDGGI I ST+VN+ E Sbjct: 132 LLEQLGEPLMSVSLIMPGDTVPLSDPYEMRQVLEHHVDLIIDGGIGGIS-ASTVVNL-SE 189 Query: 187 KKVRILRPGG 196 + +I+R G Sbjct: 190 GEPQIVRVGC 199 >gi|225681026|gb|EEH19310.1| Sua5/YciO/YrdC/YwlC family protein [Paracoccidioides brasiliensis Pb03] Length = 412 Score = 164 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 63/238 (26%), Positives = 101/238 (42%), Gaps = 59/238 (24%) Query: 8 DSNALRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 ++ AL ++ E L + +P+A PTETVYGL D+ A++ +Y+ K+RPA NPLI HVS Sbjct: 57 EAKALLESAEALRMSDIPVAFPTETVYGLGADATRSAAVQGIYKAKQRPADNPLIVHVSS 116 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126 +++ +L S++ H S + R Sbjct: 117 REQLQR----------------------ILRSHSSSPDHGSSDSRKTGNQEREETNLIPP 154 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 + E G I +I+DGG +G+EST+V+ Sbjct: 155 IYEPLG-----------------------------RIDIILDGGPCGVGVESTVVDGLL- 184 Query: 187 KKVRILRPGGLEIETLKRAISVEL------EYCVDETSTPQSPGMLKSHYAPRSQVRL 238 ILRPGG+ IE ++ E + + P++PGM HY+P+++V L Sbjct: 185 HPPAILRPGGIGIEEIRACPGWEDVRVGYKDGALQGKEAPRAPGMKYKHYSPKAKVVL 242 Score = 72.0 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 2/63 (3%) Query: 259 NIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG--LGIAINNRLE 316 N+ ++S + A LF+ ++ D+ S I I + L AI NRL Sbjct: 345 NLATPAELFDVSIGRDTESIARGLFSALRGLDEENVSVIYVEGISDTEGDLAAAIMNRLR 404 Query: 317 RAA 319 +AA Sbjct: 405 KAA 407 >gi|254496473|ref|ZP_05109350.1| translation factor [Legionella drancourtii LLAP12] gi|254354329|gb|EET12987.1| translation factor [Legionella drancourtii LLAP12] Length = 214 Score = 164 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 49/197 (24%), Positives = 87/197 (44%), Gaps = 6/197 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + LRKA ++ G I PT++ Y L N A+ R+ +++ + + D+S Sbjct: 22 ARLLRKAATIIEDGGVIVYPTDSGYALGCSLGNKAALERIRRLRQLDKNHNMTLVCRDLS 81 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCG-FTKK 126 + +A V L K+ PG T +L+ +T ++ L KT RVP T Sbjct: 82 QLGTYARVPNPIFRLLKVLTPGSYTFILN--ATHEVPRLMLHPKKKTLGLRVPDNLITLA 139 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+ET PL + G + + + + ++ L+IDGG +T+V++ + Sbjct: 140 LLETLEAPLMSSTLILPGAKAPLSEPEAIRDILGNQVDLVIDGGNCGQ-EPTTVVDLTGD 198 Query: 187 KKVRILRPGGLEIETLK 203 V ILR G + + + Sbjct: 199 YPV-ILREGKGDPDPFR 214 >gi|213968655|ref|ZP_03396797.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. tomato T1] gi|301384615|ref|ZP_07233033.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. tomato Max13] gi|302062060|ref|ZP_07253601.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. tomato K40] gi|302130738|ref|ZP_07256728.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213926588|gb|EEB60141.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. tomato T1] gi|331017429|gb|EGH97485.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 222 Score = 164 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 50/190 (26%), Positives = 86/190 (45%), Gaps = 6/190 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E + AG + PT++ Y L + +AI R+ +++ + D+S Sbjct: 27 PRLIKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLS 86 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCG-FTKK 126 + A VD + K PGP T +L+ +T ++ L +T RVP + Sbjct: 87 QLGLFAKVDTGAFRALKAHTPGPYTFILN--ATREVPRLILHPKRRTIGLRVPSHPIAQA 144 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+E G PL S G + + + + + LIIDGGI I ST++N+ E Sbjct: 145 LLEQLGEPLMSVSLIMPGDTVPLSDPYEMRQILEHHVDLIIDGGIGGIS-ASTVINL-SE 202 Query: 187 KKVRILRPGG 196 + +I+R G Sbjct: 203 GEPQIVRVGC 212 >gi|302188867|ref|ZP_07265540.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. syringae 642] Length = 222 Score = 164 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 50/190 (26%), Positives = 87/190 (45%), Gaps = 6/190 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E + AG + PT++ Y L + +AI R+ +++ + D+S Sbjct: 27 PRLIKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLS 86 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKK 126 + A VD + K PGP T +L+ +T ++ L +T RVP + Sbjct: 87 QLGLFAKVDTGAFRALKAHTPGPYTFILN--ATREVPRLVLHPKRRTIGLRVPSHPIAQA 144 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+E G PL S G + + + + ++ LIIDGGI I ST++N+ E Sbjct: 145 LLEQLGEPLMSVSLIMPGDTVPLSDPYEMRQVLEHQVDLIIDGGIGGIS-ASTVINL-AE 202 Query: 187 KKVRILRPGG 196 + +I+R G Sbjct: 203 GEPQIVRVGC 212 >gi|333029267|ref|ZP_08457328.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides coprosuis DSM 18011] gi|332739864|gb|EGJ70346.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides coprosuis DSM 18011] Length = 199 Score = 164 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 47/189 (24%), Positives = 90/189 (47%), Gaps = 8/189 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 ++KAC+ L G I PT+TV+G+ D+ N A++R+Y IK+R L+ V Sbjct: 15 EDIKKACQVLRDGGVILYPTDTVWGIGCDATNAEAVKRVYAIKQRTDSKALLVLVDSPVK 74 Query: 70 VKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 V + P ++ L + PLT++ D ++ P A+ + RV F+++L Sbjct: 75 VDFYVEDIPSVAWDLIE-LTEKPLTIIYD--GARNLAPNLLADDGSVGIRVSGEKFSQQL 131 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQC 185 + + + SAN SGQ + +N +S + + I++ + S+I+ + Sbjct: 132 CQRFRKAIVSTSANISGQPTPSNFSE-ISDEVKSLVDYIVEYRQDDMSHPKPSSIIKLGR 190 Query: 186 EKKVRILRP 194 +V+++R Sbjct: 191 GGEVKVIRE 199 >gi|262040758|ref|ZP_06013989.1| Sua5/YciO/YrdC/YwlC family protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259041902|gb|EEW42942.1| Sua5/YciO/YrdC/YwlC family protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 190 Score = 164 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 50/187 (26%), Positives = 70/187 (37%), Gaps = 8/187 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 S A+ A L IA PTE V+G+ D + TA+ RL E+K+RP LI + Sbjct: 6 PSEAVAHAVAVLKNEHVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVEKGLILIAASF 65 Query: 68 SMVKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 +K + WPGP+T V T T + RV Sbjct: 66 EQLKPYIDDSRLSDSQREAIFSCWPGPVTFVFPARPET--PRWLTGRFDSLAVRVTNHPL 123 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 +L E YG PL SAN +GQ + + P ++DG S I + Sbjct: 124 VIELCEAYGKPLVSTSANLTGQPPCRTTAEVY-AQFGDSFP-VVDGATGGRQNPSEIRDA 181 Query: 184 QCEKKVR 190 + R Sbjct: 182 LTGELFR 188 >gi|325836782|ref|ZP_08166249.1| Sua5/YciO/YrdC/YwlC family protein [Turicibacter sp. HGF1] gi|325491160|gb|EGC93449.1| Sua5/YciO/YrdC/YwlC family protein [Turicibacter sp. HGF1] Length = 197 Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 54/201 (26%), Positives = 94/201 (46%), Gaps = 6/201 (2%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I L + L I PT+TVYG+ + +P A+ +++E+K RP LI + Sbjct: 2 IFKKEQLSEIIGQLHEDDVIVFPTDTVYGIGANIHSPIALNKIFEVKNRPTDKSLIILCA 61 Query: 66 DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 ++ +++ +D L F PG LTL+L+ ++ T T R+P Sbjct: 62 NVMQMEEIVGPLDQQVKVLVDNFLPGGLTLILNT--KLELADEITRGKSTIGLRIPNHPV 119 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + PLA SAN SG+ S T ++ S+ + + +ID G + + STI++ Sbjct: 120 ALELLEKIGPLATTSANISGEPSPTMIE--TSNPVISRVKFVIDDGETMEKVPSTILDCT 177 Query: 185 CEKKVRILRPGGLEIETLKRA 205 + ++ ILR G + E +K+ Sbjct: 178 -QSEIVILRQGAISEEEIKKF 197 >gi|294784249|ref|ZP_06749544.1| Sua5/YciO/YrdC/YwlC family protein [Fusobacterium sp. 3_1_27] gi|294488115|gb|EFG35466.1| Sua5/YciO/YrdC/YwlC family protein [Fusobacterium sp. 3_1_27] Length = 217 Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 62/183 (33%), Positives = 91/183 (49%), Gaps = 9/183 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 + G I PT+TVYGL N +I +Y K R +PLI +S + V++ A V Sbjct: 25 IKKGSLIIYPTDTVYGLGAIVTNEQSINNIYLAKSRSFTSPLIALLSSVDKVEEVAYVSD 84 Query: 79 ----LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGH 133 L LAK FWPG LT++L I + + T R+P K+IE G Sbjct: 85 KNKNLLEKLAKAFWPGALTVILKRKEH--IPSIMVSGGDTIGVRIPNLDLAIKIIELAGG 142 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 LA SAN SG+ + + LS +I ++ ++ID G K+G STI+++ + +ILR Sbjct: 143 ILATTSANISGEATPKSYDE-LSEAIKSKVDILIDSGECKLGEASTIIDLTSDVP-KILR 200 Query: 194 PGG 196 G Sbjct: 201 KGA 203 >gi|260062809|ref|YP_003195889.1| putative Sua5/yciO/yrdC family protein [Robiginitalea biformata HTCC2501] gi|88784377|gb|EAR15547.1| putative Sua5/yciO/yrdC family protein [Robiginitalea biformata HTCC2501] Length = 207 Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 47/199 (23%), Positives = 79/199 (39%), Gaps = 9/199 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL-ICHVSD 66 + A+R+ E G + PT+TVYGL D N A+ RL IK D Sbjct: 13 NPKAVRQVVEAFRDGGLVIYPTDTVYGLGCDITNSRALERLARIKGVKLHKANWSFICED 72 Query: 67 ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 +S + + +D + + K PGP T +L + P KT RVP Sbjct: 73 LSNLSDYVRQIDTQTFKILKRALPGPYTFILPGNNNL---PRDFKKKKTVGIRVPDNRIA 129 Query: 125 KKLIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 L+ G P+ S + T ++ + +++DGG + ST++++ Sbjct: 130 HALVAGLGRPIVSTSIRDEDDVLEYTTDPELIYEKWENLVDVVVDGGYGG-NVASTVIDL 188 Query: 184 QCEKKVRILRPGGLEIETL 202 + I+R G ++ L Sbjct: 189 SGPEP-EIVREGKGDLSIL 206 >gi|269128126|ref|YP_003301496.1| Sua5/YciO/YrdC/YwlC family protein [Thermomonospora curvata DSM 43183] gi|268313084|gb|ACY99458.1| Sua5/YciO/YrdC/YwlC family protein [Thermomonospora curvata DSM 43183] Length = 258 Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 51/222 (22%), Positives = 90/222 (40%), Gaps = 8/222 (3%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 + + + +A + G I +PT+TVYG+ D+ P+A++ L + K P V Sbjct: 13 PMERTRGIAEAVSAVRRGELIVLPTDTVYGIGCDAFTPSAVQALLDAKGHGRDRPPAVLV 72 Query: 65 SDISMVKKHASVD-PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 + L FWPG LTLV + ++ T R+P Sbjct: 73 GSVRAATALVEDLGTYGQDLIDEFWPGALTLVC--RANRNLSWDLGDAKGTVAVRMPLHD 130 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + PLA+ +A R G + S + + +DGG S ST++++ Sbjct: 131 LALELLKETGPLAVSAAARKGGPPARSAAQA-ESVFGDAVSVCLDGGPSGERQPSTLLDL 189 Query: 184 QCEKKVRILRPGGLEIETLKRAISV---ELEYCVDETSTPQS 222 R+LR G + ++ ++ V E + +ET+ PQ+ Sbjct: 190 TGPIP-RLLRAGAVSVDRIRAITGVVMTEEDESAEETAEPQA 230 >gi|225870519|ref|YP_002746466.1| hypothetical protein SEQ_1163 [Streptococcus equi subsp. equi 4047] gi|225699923|emb|CAW93855.1| conserved hypothetical protein [Streptococcus equi subsp. equi 4047] Length = 197 Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 60/192 (31%), Positives = 88/192 (45%), Gaps = 6/192 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + E + AG + +PTETVYGL + N A+ +Y +KKRP + +V+D + Sbjct: 2 ITHLIETIKAGGALILPTETVYGLFAQALNEEAVNAVYRLKKRPRDKAMNLNVADFESIL 61 Query: 72 KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130 + P L L + F PGPLT++L + + LKT FR+P I Sbjct: 62 AFSKQQPAYLNKLYEAFLPGPLTIIL--KANAQTPYWINSGLKTVGFRLPSHPLTAKIIR 119 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 PL PSAN SG S I+ + ++ D G +STI+++ KV Sbjct: 120 ATGPLIGPSANLSGSKSGKCFNDIVKA-FDGKVDGYADDAY-LTGKDSTILDLSS-PKVS 176 Query: 191 ILRPGGLEIETL 202 ILR G + E L Sbjct: 177 ILRQGAITKEQL 188 >gi|152972191|ref|YP_001337337.1| putative ribosome maturation factor [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|330002239|ref|ZP_08304250.1| Sua5/YciO/YrdC/YwlC family protein [Klebsiella sp. MS 92-3] gi|212288208|sp|A6TET6|RIMN_KLEP7 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|150957040|gb|ABR79070.1| putative RNA-binding protein with unique protein fold [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|328537378|gb|EGF63627.1| Sua5/YciO/YrdC/YwlC family protein [Klebsiella sp. MS 92-3] Length = 190 Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 50/187 (26%), Positives = 70/187 (37%), Gaps = 8/187 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 S A+ A L IA PTE V+G+ D + TA+ RL E+K+RP LI + Sbjct: 6 PSEAVAHAVAVLKNEHVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVEKGLILIAASF 65 Query: 68 SMVKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 +K + WPGP+T V T T + RV Sbjct: 66 EQLKPYIDDSRLSDSQREAIFSCWPGPVTFVFPARPET--PRWLTGRFDSLAVRVTNHPL 123 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 +L E YG PL SAN +GQ + + P ++DG S I + Sbjct: 124 VIELCEAYGKPLVSTSANLTGQPPCRTTAEV-HAQFGDSFP-VVDGATGGRQNPSEIRDA 181 Query: 184 QCEKKVR 190 + R Sbjct: 182 LTGELFR 188 >gi|118462898|ref|YP_880757.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium avium 104] gi|254774340|ref|ZP_05215856.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium avium subsp. avium ATCC 25291] gi|118164185|gb|ABK65082.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium avium 104] Length = 219 Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 49/207 (23%), Positives = 85/207 (41%), Gaps = 5/207 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S + A + G + +PT+TVYG+ D+ N A+ L K R P+ V Sbjct: 14 SRGIAAAAAAVKGGRLVVMPTDTVYGIGADAFNSAAVSALLSAKGRGRDMPVGVLVGSWH 73 Query: 69 MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 ++ P + L + FWPG L+LV+ + T R+P Sbjct: 74 TIEGLVYTMPDGARDLIRAFWPGALSLVVTQAPSLQW--DLGDARGTVMLRMPLHPVAIE 131 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + P+A+ SAN SG + + + + + + G ++ G STIV++ Sbjct: 132 LLREVGPMAVSSANISGHPAAVDADEA-RGQLGDLVDVYLAAGRAERGAASTIVDLTGAT 190 Query: 188 KVRILRPGGLEIETLKRAISVELEYCV 214 RILRPG + + + + ++ E Sbjct: 191 P-RILRPGPVSAQRIAEVLGIDPESLA 216 >gi|261821581|ref|YP_003259687.1| hypothetical protein Pecwa_2310 [Pectobacterium wasabiae WPP163] gi|261605594|gb|ACX88080.1| Sua5/YciO/YrdC/YwlC family protein [Pectobacterium wasabiae WPP163] Length = 206 Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 45/188 (23%), Positives = 72/188 (38%), Gaps = 4/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ EFL G I PT++ Y L A+ R+ I+ + + D+S Sbjct: 14 PRLINQSVEFLHKGGVIVYPTDSGYALGCMLGEKNALERICRIRDLGSDHNFTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD + L K PG T +L L KT RVP L Sbjct: 74 ELSTYAHVDNSAFRLIKNNTPGNYTFILKATKEVP-RRLMNEKRKTIGLRVPSNPIALDL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + PL + G + + + K + LII GG S +T++++ E Sbjct: 133 LAALNEPLMSTTLMLPGNDFAESDPEEIQEELGKLVDLIIHGG-SLGQQPTTVIDLT-ES 190 Query: 188 KVRILRPG 195 R+ R G Sbjct: 191 VPRVAREG 198 >gi|308177038|ref|YP_003916444.1| Sua5 family translation factor [Arthrobacter arilaitensis Re117] gi|307744501|emb|CBT75473.1| putative Sua5 family translation factor [Arthrobacter arilaitensis Re117] Length = 227 Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 55/200 (27%), Positives = 91/200 (45%), Gaps = 9/200 (4%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLSLHL 83 I +PT+TVYG+ D+ + + L K R P ++ + + A + + L Sbjct: 30 IVLPTDTVYGIGADAFSAQGVAMLLAAKGRNRTMPPPVLIAQSATMDGLARDIPDEARKL 89 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRS 143 A+ FWPG LTL+L + T T RVP T + PLA+ SANR+ Sbjct: 90 AEAFWPGGLTLILHAQPSLTWDLGET--RGTVALRVPNDETALELLGQTGPLAVSSANRT 147 Query: 144 GQISITNVKHILSSSICKEIPLIIDGGI-SKIG---LESTIVNVQCEKKVRILRPGGLEI 199 G + N++ L + + + +DGG + G L STI++ + + ++R G + I Sbjct: 148 GNPAALNIEQAL-EQLGDSVDVYLDGGPRGEEGDDVLPSTIIDCTG-QHLSVVRSGAISI 205 Query: 200 ETLKRAISVELEYCVDETST 219 E L+ + L+ D T Sbjct: 206 EELRVVVPGILDLGQDAPET 225 >gi|256846908|ref|ZP_05552362.1| SUA5 family protein [Fusobacterium sp. 3_1_36A2] gi|256717706|gb|EEU31265.1| SUA5 family protein [Fusobacterium sp. 3_1_36A2] Length = 217 Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 62/183 (33%), Positives = 91/183 (49%), Gaps = 9/183 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 + G I PT+TVYGL N +I +Y K R +PLI +S + V++ A V Sbjct: 25 IKKGSLIIYPTDTVYGLGAIVTNEQSINNIYLAKSRSFTSPLIALLSSVDKVEEVAYVSD 84 Query: 79 ----LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGH 133 L LAK FWPG LT++L I + + T R+P K+IE G Sbjct: 85 KNKNLLEKLAKAFWPGALTVILKRKEH--IPSIIVSGGDTIGVRIPNLDLAIKIIELAGG 142 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 LA SAN SG+ + + LS +I ++ ++ID G K+G STI+++ + +ILR Sbjct: 143 ILATTSANISGEATPKSYDE-LSEAIKSKVDILIDSGECKLGEASTIIDLTSDVP-KILR 200 Query: 194 PGG 196 G Sbjct: 201 KGA 203 >gi|41408558|ref|NP_961394.1| hypothetical protein MAP2460c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41396916|gb|AAS04777.1| hypothetical protein MAP_2460c [Mycobacterium avium subsp. paratuberculosis K-10] Length = 219 Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 49/207 (23%), Positives = 85/207 (41%), Gaps = 5/207 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S + A + G + +PT+TVYG+ D+ N A+ L K R P+ V Sbjct: 14 SRGIAAAAAAVKGGRLVVMPTDTVYGIGADAFNSAAVSALLSAKGRGRDMPVGVLVGSWH 73 Query: 69 MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 ++ P + L + FWPG L+LV+ + T R+P Sbjct: 74 TIEGLVYTMPDGARDLIRAFWPGALSLVVPQAPSLQW--DLGDARGTVMLRMPLHPVAIE 131 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + P+A+ SAN SG + + + + + + G ++ G STIV++ Sbjct: 132 LLREVGPMAVSSANISGHPAAVDADEA-RGQLGDLVDVYLAAGRAERGAASTIVDLTGAT 190 Query: 188 KVRILRPGGLEIETLKRAISVELEYCV 214 RILRPG + + + + ++ E Sbjct: 191 P-RILRPGPVSAQRIAAVLGIDPESLA 216 >gi|313675808|ref|YP_004053804.1| translation factor sua5 [Marivirga tractuosa DSM 4126] gi|312942506|gb|ADR21696.1| translation factor SUA5 [Marivirga tractuosa DSM 4126] Length = 207 Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 51/196 (26%), Positives = 83/196 (42%), Gaps = 8/196 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN-PLICHVSD 66 D +++ + L G I PT+T+YGL D N AI +L +K L D Sbjct: 14 DPRKIQQIVDLLKDGAVIIYPTDTIYGLGCDLTNRKAIDKLCWVKDIKPGKINLSFICED 73 Query: 67 ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFT 124 +S + + + + L K PGP T +L + +++ + AN KT R+P Sbjct: 74 MSHISDYVKNLSTPTFKLMKKNLPGPFTFILP--ANSNVPKIVNANKKTVGIRIPNNNIP 131 Query: 125 KKLIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 L++ G+PL S + I + S + ++IDGG ST+++ Sbjct: 132 IALVKALGNPLITTSIKDNDDIVEYPTDPEEIYESFKNLVDVVIDGGYGN-NNPSTVIDC 190 Query: 184 QCEKKVRILRPGGLEI 199 E I+R G EI Sbjct: 191 TKE-PAEIVREGLGEI 205 >gi|28869017|ref|NP_791636.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28852257|gb|AAO55331.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas syringae pv. tomato str. DC3000] gi|330876948|gb|EGH11097.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330966749|gb|EGH67009.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 209 Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 50/190 (26%), Positives = 86/190 (45%), Gaps = 6/190 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E + AG + PT++ Y L + +AI R+ +++ + D+S Sbjct: 14 PRLIKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCG-FTKK 126 + A VD + K PGP T +L+ +T ++ L +T RVP + Sbjct: 74 QLGLFAKVDTGAFRALKAHTPGPYTFILN--ATREVPRLILHPKRRTIGLRVPSHPIAQA 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+E G PL S G + + + + + LIIDGGI I ST++N+ E Sbjct: 132 LLEQLGEPLMSVSLIMPGDTVPLSDPYEMRQILEHHVDLIIDGGIGGIS-ASTVINL-SE 189 Query: 187 KKVRILRPGG 196 + +I+R G Sbjct: 190 GEPQIVRVGC 199 >gi|253998631|ref|YP_003050694.1| Sua5/YciO/YrdC/YwlC family protein [Methylovorus sp. SIP3-4] gi|253985310|gb|ACT50167.1| Sua5/YciO/YrdC/YwlC family protein [Methylovorus sp. SIP3-4] Length = 209 Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 43/192 (22%), Positives = 75/192 (39%), Gaps = 4/192 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A E L G +A PT++ Y L N A R+ I+ + ++S Sbjct: 14 PRLIAQAVEILRNGGVVAYPTDSSYALGCVVGNKDAQDRIRAIRGVDDDHLFTLVCRNLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD L K PG T +L L T RVP T+ L Sbjct: 74 ELAVYAQVDNSQFRLLKANTPGQYTFILKATREVP-RRLQHPKRSTLGLRVPDHAVTQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E PL S G+ + N + + ++ L+ID G +T++++ + Sbjct: 133 LEALDEPLLSMSLQLPGEEDVLNEAWEIRDRLEHQLDLVIDAGAC-SATPTTVIDLTGDS 191 Query: 188 KVRILRPGGLEI 199 + ++R G + Sbjct: 192 PI-LVRAGAGSL 202 >gi|284163341|ref|YP_003401620.1| Sua5/YciO/YrdC/YwlC family protein [Haloterrigena turkmenica DSM 5511] gi|284012996|gb|ADB58947.1| Sua5/YciO/YrdC/YwlC family protein [Haloterrigena turkmenica DSM 5511] Length = 202 Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 56/204 (27%), Positives = 90/204 (44%), Gaps = 11/204 (5%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + L +A E + AG + PTETVYGL D + A+ R++E K R P+ V Sbjct: 2 DDDDLERAAEAIRAGELVVYPTETVYGLGADGLDADAVERVFEAKGRDRSKPVSVAVPTF 61 Query: 68 SMV--KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFT 124 + + A F PGP+TL+ + T + + TA RVP C Sbjct: 62 ETALEEGYVRASERERAFADEFLPGPVTLLCER--TEALPDVLTAGRDRVGIRVPDCEPA 119 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG--GISKIGLESTIVN 182 + +E P+ SAN SG+ S V+ I + + + L D + + ST+V+ Sbjct: 120 LRFLEAAERPVTATSANVSGEPSARRVEDIGQQVLDEAVVLEADDLYESIEETVPSTVVD 179 Query: 183 VQCEKKVRILRPGGLEIETLKRAI 206 ++ E I R G L + ++ + Sbjct: 180 LEAE---TIHRRGAL-ADEIEAWL 199 >gi|253688396|ref|YP_003017586.1| Sua5/YciO/YrdC/YwlC family protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251754974|gb|ACT13050.1| Sua5/YciO/YrdC/YwlC family protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 206 Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 45/188 (23%), Positives = 74/188 (39%), Gaps = 4/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ EFL G I PT++ Y L A+ R+ I+ + + D+S Sbjct: 14 PRLINQSVEFLHKGGVIVYPTDSGYALGCMLGEKNALERICRIRDLGSDHNFTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD + L K PG T +L L KT RVP +L Sbjct: 74 ELSTYAHVDNAAFRLIKNNTPGNYTFILKATKEVP-RRLMNEKRKTIGLRVPSNPIALEL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + PL + G + + + K++ LII GG S +T++++ E Sbjct: 133 LAALNEPLMSTTLMLPGNDFAESDPEEIQEILGKQVDLIIHGG-SLGQQPTTVIDLT-ES 190 Query: 188 KVRILRPG 195 R+ R G Sbjct: 191 APRVAREG 198 >gi|261342752|ref|ZP_05970610.1| Sua5/YciO/YrdC/YwlC family protein [Enterobacter cancerogenus ATCC 35316] gi|288314931|gb|EFC53869.1| Sua5/YciO/YrdC/YwlC family protein [Enterobacter cancerogenus ATCC 35316] Length = 190 Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 46/184 (25%), Positives = 72/184 (39%), Gaps = 8/184 (4%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 ++ A + L IA PTE V+G+ D + A+ RL +K+RP LI ++ + Sbjct: 9 SIAHAVDVLKNEEVIAYPTEAVFGVGCDPDSEKAVSRLLALKQRPVEKGLILIAANYEQL 68 Query: 71 KKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 K + P WPGP+T V TT T + RV + Sbjct: 69 KPYIDDAMLTPAQRETIFSAWPGPVTFVFPAQPTT--PRWLTGRFDSLAVRVTDHPLVVE 126 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L +G PL SAN +G + +L + + P+ I G S I + Sbjct: 127 LCLAFGKPLVSTSANLTGLPPCRTTEEVL-AQFGNDFPVAI-GETGGRLNPSEIRDALTG 184 Query: 187 KKVR 190 ++ R Sbjct: 185 ERFR 188 >gi|304382269|ref|ZP_07364776.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella marshii DSM 16973] gi|304336626|gb|EFM02855.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella marshii DSM 16973] Length = 189 Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 51/193 (26%), Positives = 93/193 (48%), Gaps = 8/193 (4%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 +T +R+A E L AG I PT+TV+G+ D+ N A+ R+Y IK+R LIC V Sbjct: 1 MTQQEDIRQAVEVLKAGGVILYPTDTVWGIGCDATNKEAVARIYRIKQREDSKALICLVD 60 Query: 66 DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GF 123 + ++++ V P++ L + P T++LD ++ P A+ + R+ F Sbjct: 61 SDARLQRYVRDVPPVAWDLLDVA-EKPTTVILD--GAVNLAPNLIADDGSIALRITKEAF 117 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--GLESTIV 181 +++L + + SAN SGQ + N I + + + + S+I+ Sbjct: 118 SRELCYRFQKAIVSTSANISGQPAAQNYCDIAPELLES-VDYVCHSRRQEKRPHTPSSII 176 Query: 182 NVQCEKKVRILRP 194 + + +V+I+RP Sbjct: 177 KLAADGEVKIVRP 189 >gi|330960478|gb|EGH60738.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 209 Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 50/190 (26%), Positives = 86/190 (45%), Gaps = 6/190 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E + AG + PT++ Y L + +AI R+ +++ + D+S Sbjct: 14 PRLIKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKK 126 + A VD + K PGP T +L+ +T ++ L +T RVP + Sbjct: 74 QLGLFAKVDTGAFRALKAHTPGPYTFILN--ATREVPRLVLHPKRRTIGLRVPSHPIAQA 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+E G PL S G + + + + + LIIDGGI I ST++N+ E Sbjct: 132 LLEQLGEPLMSVSLIMPGDSVPLSDPYEMRQILEHHVDLIIDGGIGGIS-ASTVINL-SE 189 Query: 187 KKVRILRPGG 196 + +I+R G Sbjct: 190 GEPQIVRVGC 199 >gi|332662189|ref|YP_004444977.1| Sua5/YciO/YrdC/YwlC family protein [Haliscomenobacter hydrossis DSM 1100] gi|332331003|gb|AEE48104.1| Sua5/YciO/YrdC/YwlC family protein [Haliscomenobacter hydrossis DSM 1100] Length = 205 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 49/197 (24%), Positives = 84/197 (42%), Gaps = 8/197 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP-LICHVSD 66 + + + E L+ G I PT+TVYGL D N A+ ++ +++ + L D Sbjct: 11 EGRKINQVIEKLNEGGIIIYPTDTVYGLGCDINNQAAVEKICRLRRLDPKDAMLAIICKD 70 Query: 67 ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 IS V++ +D + L K PG T +L + + + KT R+P Sbjct: 71 ISQVQEFTQQIDNPTFKLLKRNLPGAFTFILPAAGS--VPKMFRNRKKTIGIRIPDHNIP 128 Query: 125 KKLIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 +L+E G P+ S +I ++ K + ++ID G ST+V+ Sbjct: 129 LQLVEGLGRPILTTSLKSDDEILEYFTDPELIYEDFQKLVDIVIDSGNGG-NTPSTVVDC 187 Query: 184 QCEKKVRILRPGGLEIE 200 EK + +LR G +E Sbjct: 188 TQEKPI-VLRLGAGMLE 203 >gi|302818656|ref|XP_002991001.1| hypothetical protein SELMODRAFT_132635 [Selaginella moellendorffii] gi|300141332|gb|EFJ08045.1| hypothetical protein SELMODRAFT_132635 [Selaginella moellendorffii] Length = 201 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 61/196 (31%), Positives = 102/196 (52%), Gaps = 5/196 (2%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 ++++ T N +R A L G I++PT+T+YGLA D+ + A+ R+Y+IK R A +PL Sbjct: 8 KVLAATQEN-VRHAIAALRRGDVISVPTDTLYGLAADACSRVAVERIYDIKGRNAGSPLA 66 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 V+D+ +K++A +D L L PGP+TLVL+ +++ L + R+P Sbjct: 67 VCVADVPDLKRYARIDHLPDALLHDLLPGPVTLVLNRGDKSELEKSLNPGLLSIGIRIPD 126 Query: 122 -GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-ST 179 F + + + LA+ SAN S + S V+ + + + D G G ST Sbjct: 127 SDFIRSVARAFDGALALTSANTSSRPSSICVEE--FEHLWPQCAAVFDAGELSAGRAGST 184 Query: 180 IVNVQCEKKVRILRPG 195 IV++ E ++LR G Sbjct: 185 IVDLTAEASFKVLRAG 200 >gi|209693706|ref|YP_002261634.1| hypothetical protein VSAL_I0082 [Aliivibrio salmonicida LFI1238] gi|208007657|emb|CAQ77767.1| conserved hypothetical protein [Aliivibrio salmonicida LFI1238] Length = 185 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 46/183 (25%), Positives = 80/183 (43%), Gaps = 7/183 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L + + L+ G IA PTE V+G+ D N A+ +L ++K+RP LI + I + Sbjct: 4 LDQVVKALNNGGVIAYPTEGVFGVGCDPDNEFALHQLLKVKQRPREKGLILIAASIDQLL 63 Query: 72 KH---ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127 + A ++ ++ K WPGP+T ++ + T PL T + RV K + Sbjct: 64 PYIDLAQLNNDQINRIKFTWPGPVTWIVPVNKNTL--PLVTGQFDSIAVRVSAHPQVKAI 121 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +G P+ SAN SG V + + ++ G I + I + + + Sbjct: 122 CSAFGKPITSTSANLSGYEPCRTVLEV-EEQLGDLGVVVFQGEIGNRTQPTEIRDAKTGE 180 Query: 188 KVR 190 +R Sbjct: 181 TLR 183 >gi|86607002|ref|YP_475765.1| Sua5/YciO/YrdC/YwlC family protein [Synechococcus sp. JA-3-3Ab] gi|86555544|gb|ABD00502.1| Sua5/YciO/YrdC/YwlC family protein [Synechococcus sp. JA-3-3Ab] Length = 235 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 91/228 (39%), Gaps = 25/228 (10%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++++ L G + PT+TVY + D + A+ R+ +K+ PL +S Sbjct: 14 ARSIQRIAAALREGAVMLYPTDTVYAIGCDVTHKQAVERVRRLKRLSNDKPLTFLCPSLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPC-GFTKK 126 + ++A V + L + PGP T +L +T + L KT RVP + Sbjct: 74 QIAQYAQVSDPAYRLMRRLIPGPFTFLLP--ATKLVPKLVMDPKRKTTGIRVPDSAICQA 131 Query: 127 LIETYGHPLAIPSANRSGQIS-----------------ITNVKHILSSSICKEIPLIIDG 169 L+ G+P+ SA G I + + + K++ L++D Sbjct: 132 LLAELGNPIVSTSAKLGGDPVGSLEVGFDSAGDWEEGGIFTAEEM--RQLEKQVDLVLDD 189 Query: 170 GISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDET 217 ST++++ + + L GL E + I++ L+ E Sbjct: 190 EAPYRAQVSTVIDLTGPEPL--LVRAGLGYEQVADLINLNLKPVEAEG 235 >gi|88798246|ref|ZP_01113832.1| hypothetical protein MED297_13347 [Reinekea sp. MED297] gi|88779022|gb|EAR10211.1| hypothetical protein MED297_13347 [Reinekea sp. MED297] Length = 206 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 46/196 (23%), Positives = 79/196 (40%), Gaps = 4/196 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E + G IA PT++ Y L N + + I++ + L D+S Sbjct: 14 PRLIKQAAEIVLQGGVIAYPTDSAYALGCLMGNKRGMDAIRRIRQIDEKHNLTLVCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGFTKKL 127 + +A VD ++ L K PGP T +L L +T RV L Sbjct: 74 DLANYAKVDNVAFRLIKNNTPGPYTFILQATREVP-RKLLHPKRRTIGLRVLANNIASAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ G P+ + N + + + E+ L+IDGG EST+V++ + Sbjct: 133 LDAVGEPMLSSTLILPNDEDPLNDPYYIREILEHELDLVIDGGFCGF-EESTVVSLLDDV 191 Query: 188 KVRILRPGGLEIETLK 203 ILR G + + Sbjct: 192 P-EILRVGAGDPAPFE 206 >gi|224543569|ref|ZP_03684108.1| hypothetical protein CATMIT_02778 [Catenibacterium mitsuokai DSM 15897] gi|224523496|gb|EEF92601.1| hypothetical protein CATMIT_02778 [Catenibacterium mitsuokai DSM 15897] Length = 206 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 61/201 (30%), Positives = 98/201 (48%), Gaps = 7/201 (3%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + + + + G +A PTETVYG+A + + R+ EIKKR + +S Sbjct: 4 VIEPEQMDLLVSAVRDGKIVAFPTETVYGVACLFDDLKGLDRIMEIKKRNPNKAVTLMLS 63 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124 VKK+ VD + + F PG +T+VL L + D + T R+P F Sbjct: 64 KKDDVKKYGLVDEGTQRVIDKFMPGRMTIVLKRLDSVDSR--HVSGKDTIGIRIPDSSFV 121 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 LI+ G PL++ SAN SGQ + TN K +L + + +I +++ G + ST+V++ Sbjct: 122 LSLIDQTG-PLSVTSANLSGQGNTTNEKEVL-AQLDGQIDMVVRG-QTASATASTVVDLS 178 Query: 185 CEKKVRILRPGGLEIETLKRA 205 VRILR G + E ++ Sbjct: 179 QGD-VRILREGLITKEEIEEV 198 >gi|322831110|ref|YP_004211137.1| SUA5/yciO/yrdC domain protein [Rahnella sp. Y9602] gi|321166311|gb|ADW72010.1| SUA5/yciO/yrdC domain protein [Rahnella sp. Y9602] Length = 189 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 49/191 (25%), Positives = 75/191 (39%), Gaps = 8/191 (4%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 M+ + E L IA PTE V+GL D + A+ L +KKRP LI Sbjct: 1 MNKETEKSFSAVLEALHGQHVIAYPTEAVFGLGCDPDSEQAVEALLALKKRPKDKGLILI 60 Query: 64 VSDISMVKKHASVDPLSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 + + + L+ FWPGP+T V+ +T T + RV Sbjct: 61 ADNYQQLLPYIDDSSLTEQQLAHVVSFWPGPVTWVMPAKPST--PDWLTGRFTSLAVRVT 118 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 K+L + +G PL SAN +GQ + + K+ P ++DG + S Sbjct: 119 DHPLVKELCQKFGKPLVSTSANLNGQPPCRLSEEV-RLQFGKDFP-VLDGDVGGRDNPSE 176 Query: 180 IVNVQCEKKVR 190 I + +R Sbjct: 177 IRDALTGNLIR 187 >gi|330995801|ref|ZP_08319698.1| Sua5/YciO/YrdC/YwlC family protein [Paraprevotella xylaniphila YIT 11841] gi|329574531|gb|EGG56096.1| Sua5/YciO/YrdC/YwlC family protein [Paraprevotella xylaniphila YIT 11841] Length = 189 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 49/192 (25%), Positives = 91/192 (47%), Gaps = 8/192 (4%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + +R+A E + G I PT+T++G+ D+ N A+RR+Y+IKKR LIC V Sbjct: 1 MNREEDIRQAVEVMRRGGVILYPTDTIWGIGCDATNEEAVRRVYDIKKRDDSKALICLVD 60 Query: 66 DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123 ++++ V ++ L + + PLT++ D ++ P A + RV F Sbjct: 61 SDHRLQRYVSDVPNVAWDLIE-YATRPLTIIFD--KAKNLAPNLLAEDGSVGIRVTREEF 117 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL--ESTIV 181 +++L + + SAN SG+ S +S I + I+ + S+I+ Sbjct: 118 SRELCYRFQKAVVSTSANVSGEPSPACFDD-ISDEIKNAVDYIVQSRRKEKTKAAPSSII 176 Query: 182 NVQCEKKVRILR 193 ++ + +V I+R Sbjct: 177 KLRPDGEVTIIR 188 >gi|260582127|ref|ZP_05849921.1| SUA5 protein [Haemophilus influenzae NT127] gi|260094759|gb|EEW78653.1| SUA5 protein [Haemophilus influenzae NT127] Length = 207 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 51/193 (26%), Positives = 82/193 (42%), Gaps = 7/193 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A E L G I PT++ Y L + A+ R+ I+K + SD+S Sbjct: 14 ARLINQAVEILQKGGVIVYPTDSGYALGCMMGDKHAMDRIVAIRKLTEGHNFTLVCSDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A+V+ + L K PG T +L L T+ KT RVP L Sbjct: 74 ELSTYATVNNTAYRLIKNNTPGRYTFILTATKELP-RRLMTSKRKTIGLRVPDNKIALDL 132 Query: 128 IETYGHPLAIPSANRSGQISIT-NVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQC 185 + G P+ S + T + + + ++ LII GG +G E +T+V++ Sbjct: 133 LSALGEPILSCSLMLPNEEHTTQSDPEEIRDRLEHQVDLIIHGGY--LGQEPTTVVDLTE 190 Query: 186 EKKVRILRPGGLE 198 E V ILR G Sbjct: 191 ESPV-ILREGSGS 202 >gi|66046814|ref|YP_236655.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. syringae B728a] gi|63257521|gb|AAY38617.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. syringae B728a] Length = 222 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 50/190 (26%), Positives = 87/190 (45%), Gaps = 6/190 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E + AG + PT++ Y L + +AI R+ +++ + D+S Sbjct: 27 PRLIKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLS 86 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKK 126 + A VD + K PGP T +L+ +T ++ L +T RVP + Sbjct: 87 QLGLFAKVDTGAFRALKAHTPGPYTFILN--ATREVPRLVLHPKRRTIGLRVPSHPIAQA 144 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+E G PL S G + + + + ++ LIIDGGI I ST++N+ E Sbjct: 145 LLEQLGEPLMSVSLIMPGDSVPLSDPYEMRQVLEHQVDLIIDGGIGGIS-ASTVINL-AE 202 Query: 187 KKVRILRPGG 196 + +I+R G Sbjct: 203 GEPQIVRVGC 212 >gi|238798392|ref|ZP_04641874.1| hypothetical protein ymoll0001_19710 [Yersinia mollaretii ATCC 43969] gi|238717777|gb|EEQ09611.1| hypothetical protein ymoll0001_19710 [Yersinia mollaretii ATCC 43969] Length = 184 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 42/183 (22%), Positives = 73/183 (39%), Gaps = 4/183 (2%) Query: 18 FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77 L G + PT++ Y L + TA+ R+ I++ + D+S + +A VD Sbjct: 1 MLRKGGVVVYPTDSGYALGCRLEDKTAMERICRIRQLDGNHNFTLVCRDLSELSTYAYVD 60 Query: 78 PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLA 136 + L K PG T +L L KT RVP L++ G PL Sbjct: 61 NSAFRLIKNNTPGNYTFILKATKEVP-RRLMNDKRKTIGLRVPSNPIALALLDVLGEPLM 119 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 + G + + + K++ LII GG S +T++++ + ++R G Sbjct: 120 STTLMLPGNDFAESDPEEIKDHLGKQVDLIIHGG-SLGQQPTTVIDLT-DSSPEVIREGA 177 Query: 197 LEI 199 + Sbjct: 178 GDA 180 >gi|86147122|ref|ZP_01065438.1| Sua5/YciO/YrdC family protein [Vibrio sp. MED222] gi|85835006|gb|EAQ53148.1| Sua5/YciO/YrdC family protein [Vibrio sp. MED222] Length = 185 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 42/185 (22%), Positives = 81/185 (43%), Gaps = 7/185 (3%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + + + L G IA PTE V+G+ D NP AI++L ++K+RP LI + Sbjct: 2 DNFQHTLQALQQGEVIAYPTEGVFGVGCDPDNPQAIKKLLDLKQRPMEKGLILIAASYEQ 61 Query: 70 VKKHASVDPLSLHLA---KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 + + L+ K WPGP+T ++ ++ + + ++ RV + Sbjct: 62 LLPYIDESQLTEAQLATVKATWPGPVTWIMPT--SSKVTDWVSGQFESIAVRVTDHPLVQ 119 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 ++ +G PL SAN +G+ + + + + + I++G S I + + Sbjct: 120 RMCNEFGKPLTSTSANLTGESPCMTTEEV-QQQLGQHLVAILEGQTGGREKPSEIRDAKT 178 Query: 186 EKKVR 190 K +R Sbjct: 179 SKILR 183 >gi|330972285|gb|EGH72351.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. aceris str. M302273PT] Length = 209 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 50/190 (26%), Positives = 87/190 (45%), Gaps = 6/190 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E + AG + PT++ Y L + +AI R+ +++ + D+S Sbjct: 14 PRLIKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKK 126 + A VD + K PGP T +L+ +T ++ L +T RVP + Sbjct: 74 QLGLFAKVDTGAFRALKAHTPGPYTFILN--ATREVPRLVLHPKRRTIGLRVPSHPIAQA 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+E G PL S G + + + + ++ LIIDGGI I ST++N+ E Sbjct: 132 LLEQLGEPLMSVSLIMPGDSVPLSDPYEMRQVLEHQVDLIIDGGIGGIS-ASTVINL-AE 189 Query: 187 KKVRILRPGG 196 + +I+R G Sbjct: 190 GEPQIVRVGC 199 >gi|58584895|ref|YP_198468.1| putative translation factor, SUA5 [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419211|gb|AAW71226.1| Putative translation factor, SUA5 [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 208 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 52/207 (25%), Positives = 97/207 (46%), Gaps = 5/207 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + L + PTETVY LA ++ + AI ++Y++KKR PL VSD+ + Sbjct: 2 VSEIINAIQNNLLVCFPTETVYALACNALDDGAIEKIYQVKKRSQDKPLSIFVSDVCSLV 61 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 K A ++ + L F PGP+T +L L + + + R+P ++ Sbjct: 62 KIARLEEKYIDLINHFSPGPITYILPLKNNNMLPNRFFKG--SIGIRIPDHPIAISILNR 119 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 P+ S N SG+ S+ + SI + + +I+G G+ESTI ++ +++ Sbjct: 120 LKIPIVATSINVSGEKSVCKASD-IPQSIKQHLSAVIEGDELVSGIESTITDLTGN-RIK 177 Query: 191 ILRPGGLEIETLKRAISVELEYCVDET 217 LR G + ++ + + E+ +E Sbjct: 178 FLREGIISLQVVNNMLLTEIYRKKNEK 204 >gi|225868515|ref|YP_002744463.1| hypothetical protein SZO_09360 [Streptococcus equi subsp. zooepidemicus] gi|225701791|emb|CAW99204.1| conserved hypothetical protein [Streptococcus equi subsp. zooepidemicus] Length = 197 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 59/192 (30%), Positives = 88/192 (45%), Gaps = 6/192 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + AG + +PTETVYGL + N A+ +Y +KKRP + +V+D + Sbjct: 2 ITHLIKTIKAGGALILPTETVYGLFAQALNEEAVNAVYRLKKRPRDKAMNLNVADFESIL 61 Query: 72 KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130 + P L L + F PGPLT++L + + LKT FR+P I Sbjct: 62 AFSKQQPAYLNKLYEAFLPGPLTIIL--KANAQTPYWINSGLKTVGFRLPSHPLTAEIIR 119 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 PL PSAN SG S I+ + ++ D G +STI+++ KV Sbjct: 120 ATGPLIGPSANLSGSKSGKCFNDIVKA-FDGKVDGYADDAY-LTGKDSTILDLSS-PKVS 176 Query: 191 ILRPGGLEIETL 202 ILR G + E L Sbjct: 177 ILRQGAITKEQL 188 >gi|289677279|ref|ZP_06498169.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. syringae FF5] Length = 222 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 50/190 (26%), Positives = 87/190 (45%), Gaps = 6/190 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E + AG + PT++ Y L + +AI R+ +++ + D+S Sbjct: 27 PRLIKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLS 86 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKK 126 + A VD + K PGP T +L+ +T ++ L +T RVP + Sbjct: 87 QLGLFAKVDTGAFRALKAHTPGPYTFILN--ATREVPRLVLHPKRRTIGLRVPSHPIAQA 144 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+E G PL S G + + + + ++ LIIDGGI I ST++N+ E Sbjct: 145 LLEQLGEPLMSVSLIMPGDSVPLSDPYEMRQILEHQVDLIIDGGIGGIS-ASTVINL-AE 202 Query: 187 KKVRILRPGG 196 + +I+R G Sbjct: 203 GEPQIVRVGC 212 >gi|317052438|ref|YP_004113554.1| Sua5/YciO/YrdC/YwlC family protein [Desulfurispirillum indicum S5] gi|316947522|gb|ADU66998.1| Sua5/YciO/YrdC/YwlC family protein [Desulfurispirillum indicum S5] Length = 202 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 50/200 (25%), Positives = 84/200 (42%), Gaps = 10/200 (5%) Query: 1 MQIMSI----TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56 M++ ++ DS + A E + G +A PT++ YG+ D N AI R+ IK+ Sbjct: 1 MKLFTVQPNNIDSRQIAAAVEIMRNGGLVAYPTDSAYGIGCDILNKDAIARVRRIKQMHD 60 Query: 57 MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 PL S +S ++A + + K PGP T +LD T + K Sbjct: 61 AKPLTFICSSLSHASQYAIISDYAYRTMKHLIPGPYTFLLDATKLTPKA-VQNPKRKRCG 119 Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R+P L+E G P+ +A G+ T + + + ++DGG S+ Sbjct: 120 IRIPANDICMALVEELGRPIISTTAKVDGE--PTGDPWRIHQELEGMLDALVDGGYSEPT 177 Query: 176 LESTIVNVQCEKKVRILRPG 195 T V + +V ++R G Sbjct: 178 Q--TTVLLFENNQVELVRQG 195 >gi|228477561|ref|ZP_04062194.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus salivarius SK126] gi|228250705|gb|EEK09903.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus salivarius SK126] Length = 201 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 58/192 (30%), Positives = 97/192 (50%), Gaps = 8/192 (4%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 E L G + +PTETVYGL + + +A+ +YE+K RP + +V+ + ++ Sbjct: 10 EILADGGAVVLPTETVYGLFAKAMDESAVNHVYELKNRPRDKAMNLNVASYEDILSYSKE 69 Query: 77 DPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134 P L L F PGPLT++L + + + L T FR+P T++LI+ G P Sbjct: 70 QPKYLKQLYDAFLPGPLTIIL--KANDKVPRWINSGLATVGFRLPNHPVTRELIQAEG-P 126 Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194 L PSAN+SG+ S + + ++ D + +G++STI+++ +ILR Sbjct: 127 LIGPSANKSGEASGRYFDQ-IRAQFDFQVTGYQDDA-ALLGVDSTILDLSVS-PAKILRQ 183 Query: 195 GGLEIETLKRAI 206 G + E L A+ Sbjct: 184 GKITKEDLLAAL 195 >gi|195401705|ref|XP_002059453.1| GJ18829 [Drosophila virilis] gi|194142459|gb|EDW58865.1| GJ18829 [Drosophila virilis] Length = 259 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 103/207 (49%), Gaps = 9/207 (4%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 + ++ +AL+ A + L G I +PT+TVYGLA D+ N AI+RLYEIK R P+ Sbjct: 41 VCAVASLDALKLAEQCLHLGQVIGLPTDTVYGLACDANNEEAIQRLYEIKGRDEHKPVAI 100 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC- 121 V++I+ ++++ LS L PGPLT++++ L+ + K R+P Sbjct: 101 CVNNIAALRRYGQASHLSDELLTRLLPGPLTIIVERSPQLSNRFLNPSTTK-IGIRIPDY 159 Query: 122 GFTKKLIETYG-HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI----SKIGL 176 F + L T+ PLA+ SANRS S V S+ ++ + D G + L Sbjct: 160 KFMRDLCATWHEQPLALTSANRSSAPSSLQVSE--FQSLWPQLGAVFDAGRIGQTEERRL 217 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLK 203 ST++++ I+R G +TL Sbjct: 218 ASTVIDLAKPGSYSIVRAGVALKQTLA 244 >gi|303237066|ref|ZP_07323636.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella disiens FB035-09AN] gi|302482453|gb|EFL45478.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella disiens FB035-09AN] Length = 189 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 47/192 (24%), Positives = 87/192 (45%), Gaps = 8/192 (4%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 +T ++KA E + G I PT+TV+G+ D+ N A+ ++YEIK R L+C V Sbjct: 1 MTQQEDIKKAVEVMRKGGVILYPTDTVWGIGCDATNAEAVAKVYEIKHRDDSKALVCLVD 60 Query: 66 DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GF 123 ++++ +V ++ L + P T++LD ++ A + R+ F Sbjct: 61 SQDRLQRYVRNVPDVAWQLMEAV-VKPTTIILDN--AVNLASNLVAEDGSIGMRITNEPF 117 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--GLESTIV 181 +K+L + + SAN SG+ + N +S I + + + STI+ Sbjct: 118 SKELCFRFQKAIVSTSANISGEPAAQNYPD-ISEEILNAVDYVCMSRRQEHKPHQPSTII 176 Query: 182 NVQCEKKVRILR 193 V ++ I+R Sbjct: 177 KVGESGEITIIR 188 >gi|261403807|ref|YP_003248031.1| Sua5/YciO/YrdC/YwlC family protein [Methanocaldococcus vulcanius M7] gi|261370800|gb|ACX73549.1| Sua5/YciO/YrdC/YwlC family protein [Methanocaldococcus vulcanius M7] Length = 211 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 62/211 (29%), Positives = 105/211 (49%), Gaps = 14/211 (6%) Query: 2 QIMSITD--SNALRKACEFLDA----GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP 55 +I+ I D +K FL G I T+T+YG++ ++ N A++++Y+IKKR Sbjct: 4 KIIKIYDLDKEKRKKVLNFLKKEILDGKIIICGTDTLYGISANALNENAVKKIYQIKKRD 63 Query: 56 AMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115 PL + DI+ +KK+A V+ L+ + K F PGP+T++L ++I L + + Sbjct: 64 YNKPLSICLKDINEIKKYAYVNELAEKIIKHFLPGPITIIL--KKKSNIPNLVS--KEYI 119 Query: 116 CFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R+P + E PL SAN SG T V+ I I K + +ID G K Sbjct: 120 GIRIPDEEIIR--ELAIVPLTTTSANISGGKDPTCVEEIDGE-IIKNVDYVIDIGKCKYS 176 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAI 206 STI+ ++ + + ++R G + + +I Sbjct: 177 KPSTIIKIK-DSSITLIREGAVPFSEILASI 206 >gi|320323237|gb|EFW79325.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. glycinea str. B076] gi|320329732|gb|EFW85721.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. glycinea str. race 4] Length = 222 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 48/190 (25%), Positives = 85/190 (44%), Gaps = 6/190 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E + AG + PT++ Y L + +AI R+ +++ + D+S Sbjct: 27 PRLIKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLS 86 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKK 126 + A VD + K PGP T +L+ +T ++ L +T RVP + Sbjct: 87 QLGLFAKVDTGAFRALKAHTPGPYTFILN--ATREVPRLVLHPKRRTISLRVPSHPIAQA 144 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+E G PL S G + + + + ++ LIIDGGI I ST++N+ Sbjct: 145 LLEQLGEPLMSVSLIMPGDTVPLSDPYEMRQILEHQVDLIIDGGIGGIS-ASTVINLAGG 203 Query: 187 KKVRILRPGG 196 + ++R G Sbjct: 204 EP-EVVRVGC 212 >gi|260062207|ref|YP_003195287.1| Sua5/YciO/YrdC/YwlC family protein [Robiginitalea biformata HTCC2501] gi|88783769|gb|EAR14940.1| Sua5/YciO/YrdC/YwlC family protein [Robiginitalea biformata HTCC2501] Length = 190 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 46/192 (23%), Positives = 90/192 (46%), Gaps = 5/192 (2%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 M N L + L++G I PT+TV+G+ D+ NP A+ R+Y +K+RP LIC Sbjct: 1 MKTAMKNILDNCLQVLESGGLILYPTDTVWGIGCDATNPEAVARVYTLKQRPDSKALICL 60 Query: 64 VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PC 121 V +++ V ++ + P+T+V D + P A + R+ Sbjct: 61 VGSGRQLEQLIPEVPDVAWDIMD-LSEKPVTIVYDNP--QGVAPNLVAADNSLAVRIASD 117 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 F ++L+ + PL SAN +GQ + + I + ++ +++ S+I+ Sbjct: 118 NFCRELLRRFRKPLVSTSANLAGQPTPDSFSGIAPDILNGVDYVVPLQQETELRTPSSII 177 Query: 182 NVQCEKKVRILR 193 ++ + +V+++R Sbjct: 178 RLKADGQVQVIR 189 >gi|242237896|ref|YP_002986077.1| SUA5/yciO/yrdC domain protein [Dickeya dadantii Ech703] gi|242129953|gb|ACS84255.1| SUA5/yciO/yrdC domain protein [Dickeya dadantii Ech703] Length = 189 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 53/186 (28%), Positives = 80/186 (43%), Gaps = 8/186 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S L + + L IA PTE V+GL D + A+ RL ++K+RP LI +D + Sbjct: 6 SKQLSELLKKLREEQVIAYPTEAVFGLGCDPDSEVAVNRLLQLKQRPWEKGLILIAADFA 65 Query: 69 MVKKHASVDPLSL---HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 V+ + V LS WPGP+T V+ + T T + RV Sbjct: 66 QVEPYIDVSALSYIQQQRMFSTWPGPVTWVIPAKAQT--PKWLTGQFSSLAVRVSDHPLV 123 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 K+L +G PL SAN SG+ + +LS K P ++ G + S I + Sbjct: 124 KQLCLAFGKPLVSTSANLSGEAPCRTAEDVLS-QFGKNFP-VLSGKVGGRLNPSEIRDAL 181 Query: 185 CEKKVR 190 ++R Sbjct: 182 TGAQLR 187 >gi|159027852|emb|CAO87065.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 213 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 48/204 (23%), Positives = 91/204 (44%), Gaps = 10/204 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++++ C L G + PT+TVY + D +A+ R+ +IK+ PL S +S Sbjct: 14 QRSIQEICHALKNGAIMLYPTDTVYAIGCDLNVKSAVERVRQIKQLSNDKPLTFLCSSLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKK 126 + ++A V + + + PGP T +L +T + + KT RVP + Sbjct: 74 NISEYAVVSDYAYKIMRRVIPGPYTFLLP--ATKLVPKVVMNPKRKTTGIRVPDHVICRT 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHI----LSSSICKEIPLIIDGGISKIGLESTIVN 182 ++ET +P+ SA+ Q K + L ++ + LII+ G + STIV+ Sbjct: 132 ILETLENPIISSSAHLPDQEGDFPTKGLETARLFDALDHVVDLIIEDGSAPGSEVSTIVD 191 Query: 183 VQCEKKVRILRPGGLEIETLKRAI 206 ++ + + G L++ + Sbjct: 192 FTSDQPDIVRQGLGWP--ELQQWL 213 >gi|85711001|ref|ZP_01042062.1| Possible translation factor, Sua5/YciO/YrdC/YwlC family protein [Idiomarina baltica OS145] gi|85695405|gb|EAQ33342.1| Possible translation factor, Sua5/YciO/YrdC/YwlC family protein [Idiomarina baltica OS145] Length = 184 Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats. Identities = 53/178 (29%), Positives = 75/178 (42%), Gaps = 12/178 (6%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 + A L G IA PTE V+GL D RN AIR++ +K+RP LI +D S + Sbjct: 5 DIESARSALLNG-VIAYPTEAVFGLGCDPRNEEAIRKILTLKERPEDKGLILIAADYSQL 63 Query: 71 KKHASVDPLSLHLAKLF-----WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124 + + K F WPGP+TL+L T + PL T T RV Sbjct: 64 TPYVKDSAIGQD--KRFSVLSHWPGPVTLILPARDT--VSPLLTGGRDTIAVRVTAYEPV 119 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 ++L G L SAN SG+ + + S E+ + D S I++ Sbjct: 120 RELCRKLGTALVSTSANPSGEEPARTAQEV-SGYFGDEVDWVWDEKTGGAEQPSKIID 176 >gi|62181908|ref|YP_218325.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62129541|gb|AAX67244.1| putative translation factor [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322716394|gb|EFZ07965.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 200 Score = 163 bits (414), Expect = 3e-38, Method: Composition-based stats. Identities = 50/193 (25%), Positives = 79/193 (40%), Gaps = 8/193 (4%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 Q+ + + ++ A + L+ IA PTE V+G+ D + TA+ RL +K+RP LI Sbjct: 10 QVNNNLPTGSIAAAVDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLI 69 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 + +K + L+ K WPGP+T V +TT T + R Sbjct: 70 LIAASFEQLKPYIDDSILTAAQRKAVFDCWPGPVTFVFPAPATT--PRWLTGRFDSLAVR 127 Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 V L YG PL SAN SG V+ + + + P +++G Sbjct: 128 VTNHPLVVALCNAYGKPLVSTSANLSGLPPCRTVEEV-RAQFGDDFP-VVEGATGGRLNP 185 Query: 178 STIVNVQCEKKVR 190 S I + + R Sbjct: 186 SEIRDALTGELFR 198 >gi|237728617|ref|ZP_04559098.1| Sua5/YciO/YrdC/YwlC family protein [Citrobacter sp. 30_2] gi|226909239|gb|EEH95157.1| Sua5/YciO/YrdC/YwlC family protein [Citrobacter sp. 30_2] Length = 190 Score = 163 bits (414), Expect = 3e-38, Method: Composition-based stats. Identities = 51/187 (27%), Positives = 78/187 (41%), Gaps = 8/187 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 ++A+ A L IA PTE V+G+ D + TA+ RL +K+RP LI S+ Sbjct: 6 PTDAIAAAIAVLKQEKVIAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIASNF 65 Query: 68 SMVKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 +K + L+ WPGP+T V L+TT T + RV Sbjct: 66 EQLKPYIDDSMLTDAQRDAVFARWPGPVTFVFPALATT--PRWLTGRFDSLAVRVTDHPL 123 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 L + YG PL SAN SG V+ + + + P +++G S I + Sbjct: 124 VVALCQAYGKPLVSTSANLSGLPPCRTVEEV-RAQFGTDFP-VVEGETGGRLNPSEIRDA 181 Query: 184 QCEKKVR 190 ++ R Sbjct: 182 LTGEQFR 188 >gi|300709454|ref|YP_003735268.1| Sua5/YciO/YrdC/YwlC family protein [Halalkalicoccus jeotgali B3] gi|299123137|gb|ADJ13476.1| Sua5/YciO/YrdC/YwlC family protein [Halalkalicoccus jeotgali B3] Length = 192 Score = 163 bits (414), Expect = 3e-38, Method: Composition-based stats. Identities = 60/196 (30%), Positives = 93/196 (47%), Gaps = 8/196 (4%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 L +A + AG + PTETVYGL D+ +P A+ R+YE K R PL V D+ Sbjct: 2 ELDRAVRAIRAGELVVYPTETVYGLGADALDPAAVERVYEAKGRARSKPLSMAVPDVEAA 61 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130 +H S+ + F PGP+T+V+ + ++ TA R+P + Sbjct: 62 ARHTSLTDHERAFMREFLPGPVTVVV--AAGPEVPEALTAGRDRVGIRIPDQDLALSLLE 119 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 P+ SAN SGQ S V L + + + ++DGG + G EST+V+V+ R Sbjct: 120 EVAPITATSANASGQSSARRVAD-LDAGVRRAAACVLDGGETG-GTESTVVDVERG---R 174 Query: 191 ILRPGGLEIETLKRAI 206 + R G L E ++ + Sbjct: 175 LHRRGAL-AEEIEAWL 189 >gi|194753758|ref|XP_001959177.1| GF12752 [Drosophila ananassae] gi|190620475|gb|EDV35999.1| GF12752 [Drosophila ananassae] Length = 342 Score = 163 bits (414), Expect = 3e-38, Method: Composition-based stats. Identities = 64/199 (32%), Positives = 94/199 (47%), Gaps = 9/199 (4%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 + + D A+ A + L G IA+PT+TVYGLA D+ N AI+RLYEIK R P+ Sbjct: 126 VCPVGDETAIPLARQCLLNGEVIALPTDTVYGLACDANNEQAIQRLYEIKGRDEHKPVAI 185 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC- 121 V +I+ +++ LS L PGPLT+V++ S L+ K R+P Sbjct: 186 CVHNIAALRRFGQAAHLSDELLTRLLPGPLTIVIERTSYLSNRFLNPTTSK-IGIRIPDF 244 Query: 122 GFTKKLIETY-GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI----SKIGL 176 F L + PLA+ SANRS S V S+ + + D G + L Sbjct: 245 QFMSDLCAVWQDQPLALTSANRSSAPSSLQVSE--FQSLWPHLGAVFDAGRIGLTEERRL 302 Query: 177 ESTIVNVQCEKKVRILRPG 195 ST++++ I+R G Sbjct: 303 ASTVIDLATPGYYEIVRAG 321 >gi|171741085|ref|ZP_02916892.1| hypothetical protein BIFDEN_00151 [Bifidobacterium dentium ATCC 27678] gi|283455537|ref|YP_003360101.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium dentium Bd1] gi|171276699|gb|EDT44360.1| hypothetical protein BIFDEN_00151 [Bifidobacterium dentium ATCC 27678] gi|283102171|gb|ADB09277.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium dentium Bd1] Length = 220 Score = 163 bits (414), Expect = 3e-38, Method: Composition-based stats. Identities = 67/213 (31%), Positives = 104/213 (48%), Gaps = 8/213 (3%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 ++ +ITD + L +A E + G I IPT+TVYG+A D RN AIR++Y +K+RP PL Sbjct: 3 EVRTITDES-LAQAVEIIRDGGLIVIPTDTVYGVACDPRNVEAIRKIYMVKQRPKYKPLQ 61 Query: 62 CHVSDISMVKKHASVDPLSL-HLAKLFWPG---PLTLVLDLLSTTDIHPLSTANLKTACF 117 ++ I + P+ L LA +F PG P+ D S I T Sbjct: 62 VLLASIDGLDALRLDLPVPLNRLAAMFMPGAFSPIAEARDNCSLATIRRDPATGKTTQGV 121 Query: 118 RVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 R+P I PLA SANRSG+ S V + ++ + L +DGG + + Sbjct: 122 RIPNSAATLRILRAVGPLAATSANRSGEESAQTVDEAV-EALGDAVGLYLDGGATPGHVS 180 Query: 178 STIV--NVQCEKKVRILRPGGLEIETLKRAISV 208 ST+V + + ILR G + +++A+++ Sbjct: 181 STVVAADPHGRDGISILREGVIREAVIRKALTL 213 >gi|290475292|ref|YP_003468180.1| protein yciO [Xenorhabdus bovienii SS-2004] gi|289174613|emb|CBJ81407.1| Protein yciO [Xenorhabdus bovienii SS-2004] Length = 206 Score = 163 bits (414), Expect = 3e-38, Method: Composition-based stats. Identities = 43/188 (22%), Positives = 74/188 (39%), Gaps = 4/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S + ++ + L G + PT++ Y + N A+ R+ I++ + D+S Sbjct: 14 SRLIGQSVDMLKKGGVVIYPTDSGYAIGCCLENKDAMTRICRIRQLDGRHNFTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD + L K PG T +L L KT RVP L Sbjct: 74 EIATYAHVDNQAFRLIKNNTPGNYTFILQATKDVP-RRLMNEKRKTIGLRVPSNPIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E PL S G + + + K++ LII GG +T++++ + Sbjct: 133 LEGMREPLMSCSLILPGNDFAESDPEEIKDVLGKQVDLIIHGGYLGQ-QPTTVIDLTGDS 191 Query: 188 KVRILRPG 195 +LR G Sbjct: 192 PA-VLREG 198 >gi|86141363|ref|ZP_01059909.1| putative Sua5/yciO/yrdC family protein [Leeuwenhoekiella blandensis MED217] gi|85831922|gb|EAQ50377.1| putative Sua5/yciO/yrdC family protein [Leeuwenhoekiella blandensis MED217] Length = 205 Score = 163 bits (414), Expect = 3e-38, Method: Composition-based stats. Identities = 48/206 (23%), Positives = 86/206 (41%), Gaps = 13/206 (6%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 + + + D N +++ E L I PT+TVYGL D + A+ R+ +++ Sbjct: 3 EFIKLYDENPSEREIKRIVEVLKNDGVIIYPTDTVYGLGCDITSNRALERVAQLRGVKLA 62 Query: 58 NP-LICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115 D+S + + +D + L K PGP T +L + P KT Sbjct: 63 KANFSFICEDLSNLSDYVRQIDTPTFKLLKRALPGPYTFILPGNNNL---PTVFKKKKTV 119 Query: 116 CFRVPC-GFTKKLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISK 173 RVP + ++ G+P+ S I T ++ K + ++IDGG Sbjct: 120 GIRVPDNNIARAIVSHLGNPIISTSIYDEDDVIEYTTDPELILEKWDKLVDVVIDGGYGG 179 Query: 174 IGLESTIVNVQCEKKVRILRPGGLEI 199 + ST++++ + V +LR G E+ Sbjct: 180 -NIPSTVIDLTSGEAV-VLREGKGEL 203 >gi|308187010|ref|YP_003931141.1| hypothetical protein Pvag_1502 [Pantoea vagans C9-1] gi|308057520|gb|ADO09692.1| Uncharacterized protein yciO [Pantoea vagans C9-1] Length = 206 Score = 163 bits (414), Expect = 3e-38, Method: Composition-based stats. Identities = 45/188 (23%), Positives = 75/188 (39%), Gaps = 4/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A ++L+ G I PT++ Y L A+ R+ I++ + D+S Sbjct: 14 PRLINQAVDYLNKGSVIVYPTDSGYALGCRLEEKGAMERICRIRQLDGHHNFTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + ++ V + L K PG T +L L KT RVP L Sbjct: 74 ELSVYSQVGNSAFRLLKNNTPGNYTFILKATKEVP-RRLMNEKRKTIGLRVPSNPVALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E P+ S G + + SI K + LIIDGG + +T+V++ + Sbjct: 133 LEALNQPMMSTSLILPGNDFTESDPEEIQHSIGKLVDLIIDGG-TLGQQPTTVVDLTTDS 191 Query: 188 KVRILRPG 195 I+R G Sbjct: 192 P-EIVREG 198 >gi|326796235|ref|YP_004314055.1| Sua5/YciO/YrdC/YwlC family protein [Marinomonas mediterranea MMB-1] gi|326546999|gb|ADZ92219.1| Sua5/YciO/YrdC/YwlC family protein [Marinomonas mediterranea MMB-1] Length = 206 Score = 163 bits (414), Expect = 3e-38, Method: Composition-based stats. Identities = 45/186 (24%), Positives = 79/186 (42%), Gaps = 4/186 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A + + G IA PT++ Y L + A+ R+ I++ + V D+S + Sbjct: 17 IKQAAQIVREGGVIAYPTDSGYSLGCHIGDKKALERIRTIRRLDDKHNFTLVVRDLSEIS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130 +A D + L K PGP T + + S L KT R+P L++ Sbjct: 77 TYARFDNVMYRLLKHNTPGPYTFIFNATSEVP-RRLMHPKRKTIGIRIPQSNIVSALLDE 135 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G PL S G+ + + ++ ++ L+IDGG G+E T V + + Sbjct: 136 LGEPLMSASLILPGESDPMMDPYDIRGTLEHQLDLVIDGGYC--GMEPTTVVHMDSEDIT 193 Query: 191 ILRPGG 196 + R G Sbjct: 194 VSRVGA 199 >gi|254492266|ref|ZP_05105440.1| Sua5/YciO/YrdC/YwlC family protein [Methylophaga thiooxidans DMS010] gi|224462591|gb|EEF78866.1| Sua5/YciO/YrdC/YwlC family protein [Methylophaga thiooxydans DMS010] Length = 207 Score = 163 bits (414), Expect = 3e-38, Method: Composition-based stats. Identities = 41/185 (22%), Positives = 71/185 (38%), Gaps = 4/185 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++AC+ + G + PT++ Y L + + R+ I++ A + D+S + Sbjct: 17 IKQACDIIRRGGLVVYPTDSGYALGCQIGDKNTMDRIRRIRQLDADHNFTLVCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 +A + L K PG T VL L KT R+P L+E Sbjct: 77 TYAKFNNAVFRLLKAHTPGSYTFVLPATKEVP-KRLQHPKRKTIGLRIPEHTIALALLEE 135 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 PL + G + +I K + LIIDGG + +T++ + Sbjct: 136 LDEPLMSSTLILPGDDLPMTDAEDIVDAIGKHVDLIIDGGACGA-IPTTVIEFIDDVP-E 193 Query: 191 ILRPG 195 + R G Sbjct: 194 VTRYG 198 >gi|330881429|gb|EGH15578.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 209 Score = 163 bits (414), Expect = 3e-38, Method: Composition-based stats. Identities = 48/190 (25%), Positives = 85/190 (44%), Gaps = 6/190 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E + AG + PT++ Y L + +AI R+ +++ + D+S Sbjct: 14 PRLIKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKK 126 + A VD + K PGP T +L+ +T ++ L +T RVP + Sbjct: 74 QLGLFAKVDTGAFRALKAHTPGPYTFILN--ATREVPRLVLHPKRRTISLRVPSHPIAQA 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+E G PL S G + + + + ++ LIIDGGI I ST++N+ Sbjct: 132 LLEQLGEPLMSVSLIMPGDTVPLSDPYEMRQILEHQVDLIIDGGIGGIS-ASTVINLAGG 190 Query: 187 KKVRILRPGG 196 + ++R G Sbjct: 191 EP-EVVRVGC 199 >gi|323342352|ref|ZP_08082584.1| hypothetical protein HMPREF0357_10765 [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463464|gb|EFY08658.1| hypothetical protein HMPREF0357_10765 [Erysipelothrix rhusiopathiae ATCC 19414] Length = 215 Score = 163 bits (414), Expect = 3e-38, Method: Composition-based stats. Identities = 47/202 (23%), Positives = 97/202 (48%), Gaps = 7/202 (3%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 + N + + G +AI T+TVYGLA S + + ++L + K+RP P V + Sbjct: 20 NKNQSDDIAQMIQEGGLVAIMTDTVYGLAASSADGSLYQKLKDAKERPENKPFPLMVGSL 79 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKK 126 ++ A + HL K F PG +T + ++ + P + +T R+ + Sbjct: 80 DQIESVAELTDRDRHLMKTFMPGAVTFIFNI--KDGVFPFL-GDQRTIGIRMADDIWVQD 136 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 +I G+P+ +PSANRSG + + ++ + I ++ G G+ S++ ++ + Sbjct: 137 IINKVGYPIWLPSANRSGFDTAISSDMVI-DQLDGRIEGVVLGE-CVGGVSSSVFDITGD 194 Query: 187 KKVRILRPGGLEIETLKRAISV 208 + ++ LR G + +E + + + + Sbjct: 195 E-IKCLRQGVITLEEINKEVGL 215 >gi|88801030|ref|ZP_01116579.1| hypothetical protein MED297_05069 [Reinekea sp. MED297] gi|88776233|gb|EAR07459.1| hypothetical protein MED297_05069 [Reinekea sp. MED297] Length = 185 Score = 163 bits (414), Expect = 3e-38, Method: Composition-based stats. Identities = 51/182 (28%), Positives = 80/182 (43%), Gaps = 5/182 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L+ A E L G IA PTE VYGL D N A+ R+ IK+RP +I + + Sbjct: 7 LQIAAETLLEGGVIAYPTEGVYGLGCDPFNADAVSRILTIKRRPVHKGVILVADRLERFE 66 Query: 72 KHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + ++ K WPGP T V+ + T T RV + L E Sbjct: 67 PFLNPLNDAQRAQLKAHWPGPYTWVIPH--NGRLPEWVTGGRPTVAVRVSAHPLARALSE 124 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G P+ SANRSG+ S+ + +++ ++I ++ G + G S I ++ ++ Sbjct: 125 RSGLPIVSTSANRSGRPSLVTSLQV-RTALGQDIDCLLHGRVQTPGQASQITDLISGQRF 183 Query: 190 RI 191 R Sbjct: 184 RD 185 >gi|195978151|ref|YP_002123395.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974856|gb|ACG62382.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 197 Score = 163 bits (414), Expect = 3e-38, Method: Composition-based stats. Identities = 61/192 (31%), Positives = 89/192 (46%), Gaps = 6/192 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + E + AG + +PTETVYGL + N A+ +Y +KKRP + +V+D + Sbjct: 2 ITHLIETIKAGGALILPTETVYGLFAQALNEEAVNAVYRLKKRPCDKAMNLNVADFESIL 61 Query: 72 KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130 + P L L + F PGPLT++L + T + LKT FR+P I Sbjct: 62 AFSKQQPAYLSKLYEAFLPGPLTIILKANAKT--PYWINSGLKTVGFRLPSHPLTAEIIR 119 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 PL PSAN SG S I+ + ++ D G +STI+++ KV Sbjct: 120 ATGPLIGPSANLSGSKSGKCFNDIVKA-FDGKVDGYADDAY-LTGKDSTILDLSS-PKVS 176 Query: 191 ILRPGGLEIETL 202 ILR G + E L Sbjct: 177 ILRQGAITKEQL 188 >gi|195585167|ref|XP_002082361.1| GD25261 [Drosophila simulans] gi|194194370|gb|EDX07946.1| GD25261 [Drosophila simulans] Length = 248 Score = 163 bits (414), Expect = 3e-38, Method: Composition-based stats. Identities = 65/199 (32%), Positives = 99/199 (49%), Gaps = 9/199 (4%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 + ++ D AL+ A + L G IA+PT+TVYGLA D+ N TAI+RLYEIK R P+ Sbjct: 32 VCAVGDEAALQLARQCLLGGQVIALPTDTVYGLACDANNETAIQRLYEIKGRDEHKPVAI 91 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC- 121 V +I +++ LS L PGPLT+V++ + L+ + K R+P Sbjct: 92 CVHNIEALRRFGQAAHLSDELLTRLLPGPLTIVIERTAQLSNRFLNPSTSK-IGIRIPDF 150 Query: 122 GFTKKLIETYG-HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI----SKIGL 176 F + L + PLA+ SANRS S V S+ ++ + D G + L Sbjct: 151 NFMRDLCAVWQEQPLALTSANRSSAPSSLQVSE--FRSLWPQLGAVFDAGRIGLTEERRL 208 Query: 177 ESTIVNVQCEKKVRILRPG 195 ST++++ I+R G Sbjct: 209 ASTVIDLATPGYFEIVRAG 227 >gi|189233999|ref|XP_001811736.1| PREDICTED: similar to CG33786 CG33786-PA, partial [Tribolium castaneum] Length = 210 Score = 163 bits (414), Expect = 3e-38, Method: Composition-based stats. Identities = 62/197 (31%), Positives = 93/197 (47%), Gaps = 10/197 (5%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 + I D +A A + L +G IA+PT+TVYGLA D+ N T+I +LY IK R P+ Sbjct: 5 VPIRDPHAEALAVDLLKSGRVIALPTDTVYGLACDATNITSINKLYSIKGRNEAKPVAIC 64 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-G 122 + D+ VK A + L L + PGP+T++L ST D A R+P Sbjct: 65 LGDVPQVKAWAKIGHLPQGLLESLLPGPVTVILTSASTLDKSLSFNAK---VGIRIPDYH 121 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG----ISKIGLES 178 F + L G PLA+ SAN S + S + + ++ + DGG S Sbjct: 122 FIRALARGLGRPLALTSANLSNEPSSLTINE--FQDLWAQVGAVFDGGNLGLDDSRRRAS 179 Query: 179 TIVNVQCEKKVRILRPG 195 T++++ I+R G Sbjct: 180 TVIDLSECGLFTIVRHG 196 >gi|332708684|ref|ZP_08428656.1| translation factor SUA5 [Lyngbya majuscula 3L] gi|332352538|gb|EGJ32106.1| translation factor SUA5 [Lyngbya majuscula 3L] Length = 213 Score = 163 bits (414), Expect = 3e-38, Method: Composition-based stats. Identities = 50/200 (25%), Positives = 90/200 (45%), Gaps = 9/200 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + K E L+ G + PT+TVY + D +A++R+ +K+ PL S +S + Sbjct: 17 IEKIRESLEDGAVMLYPTDTVYAIGCDVHVKSAVQRVRRLKQLSNDKPLTFLCSSLSNIA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKKLIE 129 K+A V + + K PGP T +L +T + L + N KT RVP + L+ Sbjct: 77 KYARVSDPAYRIMKHLIPGPYTFLLP--ATKLVPKLVMSPNRKTTGIRVPDHNVCQALLS 134 Query: 130 TYGHPLAIPSANRSGQISIT----NVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 GHP+ SA+ Q T + L ++ + +I+D + STI+++ Sbjct: 135 ALGHPIISTSAHLPNQDGDTPTVGLERAKLFDALDGLVDIIVDNDLEPGFQVSTILDLTS 194 Query: 186 EKKVRILRPGGLEIETLKRA 205 + + + + G + E + Sbjct: 195 SEPMMVRQGLGWD-EAIAWI 213 >gi|29840271|ref|NP_829377.1| Sua5/YciO/YrdC family protein [Chlamydophila caviae GPIC] gi|29834619|gb|AAP05255.1| Sua5/YciO/YrdC family protein [Chlamydophila caviae GPIC] Length = 285 Score = 163 bits (414), Expect = 3e-38, Method: Composition-based stats. Identities = 66/219 (30%), Positives = 111/219 (50%), Gaps = 17/219 (7%) Query: 4 MSITDSNA-LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 MS D + LR+A ++L G IA PT+TVYGLAV +P A ++Y +K R PL+ Sbjct: 1 MSGADPDFFLRQAADYLHQGKVIAFPTDTVYGLAVALNSPNAQEKIYSLKHRERGKPLVI 60 Query: 63 HVSDISMVKKH--ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 +V+ + ++K + ++ LA+ F PGPLTL++D H S + + FR+P Sbjct: 61 YVNTLEDIEKFSGCPLSSQAMKLAQEFLPGPLTLLVD-------HRNSRFSQEKLGFRIP 113 Query: 121 C-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 ++LI+ G PL SAN S + ++ ++I +I G GLEST Sbjct: 114 SLPVVERLIDLSG-PLLGTSANISNFPPAVVSEEVVEDFPNEDIFII--PGQCSFGLEST 170 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETS 218 ++ ++I R G + + ++ + +E CV + + Sbjct: 171 VI---STDPLKIYREGIISRQAIEEIMGETIEPCVTQHA 206 >gi|88705951|ref|ZP_01103659.1| Sua5/YciO/YrdC/YwlC family protein [Congregibacter litoralis KT71] gi|88699665|gb|EAQ96776.1| Sua5/YciO/YrdC/YwlC family protein [Congregibacter litoralis KT71] Length = 208 Score = 163 bits (414), Expect = 3e-38, Method: Composition-based stats. Identities = 48/189 (25%), Positives = 80/189 (42%), Gaps = 3/189 (1%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +R+A + + G I PT++ Y L + A+ R+ I+K + D+S Sbjct: 14 ARLVRQAADIVRGGGVIVYPTDSAYALGCHIGDKGALDRIRRIRKLDDRHNFTLVCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD L K PGP T +L + L A KT RVP T+ L Sbjct: 74 EIATYARVDNSVYRLLKQHTPGPYTFILRATTEVP-RRLMQAKRKTVGLRVPENAITQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL S G + + + E+ L+IDGG + +T+V++ E+ Sbjct: 133 LGDLGEPLMSVSLIMPGDELPLIDPYEIRELLEHEVDLVIDGGYCGM-EATTVVDLADEE 191 Query: 188 KVRILRPGG 196 + + G Sbjct: 192 PMVLRAGKG 200 >gi|319951890|ref|YP_004163157.1| translation factor sua5 [Cellulophaga algicola DSM 14237] gi|319420550|gb|ADV47659.1| translation factor SUA5 [Cellulophaga algicola DSM 14237] Length = 192 Score = 163 bits (413), Expect = 3e-38, Method: Composition-based stats. Identities = 48/188 (25%), Positives = 85/188 (45%), Gaps = 5/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + K E L G I PT+TV+G+ D+ N A+ ++Y +KKR +IC V++ Sbjct: 8 QEEINKCIEILSKGGLILYPTDTVWGIGCDATNEEAVAKIYALKKRENTKTMICLVANDF 67 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGFTKKL 127 M++KH S P + P T+V D + A T RV F + L Sbjct: 68 MLEKHVSAVPEVAYDIIDLATKPTTIVYDNPKG--VAKNLVAEDNTLAIRVASDKFCQYL 125 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK-IGLESTIVNVQCE 186 I + P+ SAN +G+ + + I + + + +++ + G S+I+ + + Sbjct: 126 ISNFKKPIVSTSANIAGETTPQTFQEISIAILKG-VDYVVNLHQDQNSGTPSSIIKLGND 184 Query: 187 KKVRILRP 194 V+I+R Sbjct: 185 GVVKIIRE 192 >gi|163751675|ref|ZP_02158894.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella benthica KT99] gi|161328414|gb|EDP99570.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella benthica KT99] Length = 185 Score = 163 bits (413), Expect = 3e-38, Method: Composition-based stats. Identities = 51/181 (28%), Positives = 78/181 (43%), Gaps = 7/181 (3%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 + E ++ G IA PTE VYGL D N AI +L +K+RP LI SD S + + Sbjct: 8 EISELIENGGVIAYPTEAVYGLGCDPDNDVAIEKLLGLKQRPWQKGLILVASDYSQLAPY 67 Query: 74 ASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIE 129 L+ + WPGP T ++ + S DI L + + RV + + Sbjct: 68 LDDTQLTTKQLESVFSKWPGPFTFIMPIRS--DISKLLCGSFNSLAVRVSAHPGIQAICN 125 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL SAN +GQ ++ + ++ I G + STI++ K + Sbjct: 126 NLGKPLVSTSANITGQQPAMSLDEV-TAQFEGVIAGTATGELGLDANPSTIIDALSGKVL 184 Query: 190 R 190 R Sbjct: 185 R 185 >gi|89890533|ref|ZP_01202043.1| SUA5/YciO/YrdC/YwlC domain protein [Flavobacteria bacterium BBFL7] gi|89517448|gb|EAS20105.1| SUA5/YciO/YrdC/YwlC domain protein [Flavobacteria bacterium BBFL7] Length = 216 Score = 163 bits (413), Expect = 3e-38, Method: Composition-based stats. Identities = 50/186 (26%), Positives = 80/186 (43%), Gaps = 5/186 (2%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +R+A L G I PT+T+YG+ D+ N AI LY+IKKR LI V M Sbjct: 33 EDVREAVTALKKGKVILYPTDTIYGIGCDATNYDAIEELYKIKKRDRSKSLIILVDSFEM 92 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLI 128 + ++ P PLT++ D + A T RV + LI Sbjct: 93 LDRYIEEVPEMAWQVLKLNKKPLTIIYDRPKA--VAENLIAADNTLAIRVTNDPVCRALI 150 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL-ESTIVNVQCEK 187 P+ SAN SG+ + +S + + I+D ++K + S+I+ + + Sbjct: 151 RGLRKPIVSTSANLSGEKTPVGFID-ISEELKSRVDHILDLPLAKTNVPPSSIIKISNDG 209 Query: 188 KVRILR 193 ++ILR Sbjct: 210 TMKILR 215 >gi|332969027|gb|EGK08067.1| Sua5/YciO/YrdC/YwlC family protein [Kingella kingae ATCC 23330] Length = 206 Score = 163 bits (413), Expect = 3e-38, Method: Composition-based stats. Identities = 43/192 (22%), Positives = 78/192 (40%), Gaps = 5/192 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++ACE + G +PT++ Y L + TA+ R+ I+K + L +D+S Sbjct: 14 ERLIKQACEIVRQGGVAVLPTDSCYALVCQLGDKTAMERILSIRKIDLKHHLTLLCADLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD K+ PG T +L L KT RVP L Sbjct: 74 ELGTYAKVDNSQFRQLKMTTPGAYTFILPASKEVPNRTL-HPKRKTIGLRVPDNAIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + + + + + + L+IDGG +T++++ Sbjct: 133 LRELGEPLLSCTLMLPEDDEPLSDPYEIRERLEHSVDLVIDGGWCGT-EPTTVIDMTDGT 191 Query: 188 KVRILRPGGLEI 199 ++ +R G +I Sbjct: 192 EL--VRQGKGDI 201 >gi|94499923|ref|ZP_01306459.1| Sua5/YciO/YrdC/YwlC family protein [Oceanobacter sp. RED65] gi|94428124|gb|EAT13098.1| Sua5/YciO/YrdC/YwlC family protein [Oceanobacter sp. RED65] Length = 182 Score = 163 bits (413), Expect = 3e-38, Method: Composition-based stats. Identities = 49/179 (27%), Positives = 80/179 (44%), Gaps = 5/179 (2%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 +A + L IA PTETV+GL D +P A++R+ IKKR LI +I Sbjct: 7 QASKVLQHSGVIAYPTETVWGLGCDPWDPAALQRIVSIKKRDQHKGLILVAGNIGQFDFL 66 Query: 74 A-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGFTKKLIETY 131 ++ + WPGP T ++ + PL T RV P + L + + Sbjct: 67 LNEINEQQRAKLESLWPGPYTFLVPH--KNRVQPLVHGRFSTVAIRVSPHPRVQALCKYF 124 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G P+ SAN SGQ ++ + + E+ I+DG + S I+++ +++R Sbjct: 125 GGPIVSTSANYSGQPTVRSAVQA-RRVLGHELDFILDGPVGLFPGPSHIIDLASGRQLR 182 >gi|320546678|ref|ZP_08040990.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus equinus ATCC 9812] gi|320448733|gb|EFW89464.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus equinus ATCC 9812] Length = 198 Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats. Identities = 61/192 (31%), Positives = 93/192 (48%), Gaps = 8/192 (4%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 E L +G + +PTETVYGL + N A+ +Y++K+RP + +V+D + + Sbjct: 6 EILQSGGAVILPTETVYGLFAQAMNEDAVEHVYQLKRRPKEKAMNLNVADYETILAFSKN 65 Query: 77 DPLSLHLA-KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHP 134 P L F PGPLT++L + + + L T FR+P T +LI+ G P Sbjct: 66 QPSYLKKIYDTFLPGPLTIILQ--ANDRVPAWINSGLSTIGFRIPKHPQTLELIKKTG-P 122 Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194 L PSAN SG+ S I L D ++ G++STI+++ E RILR Sbjct: 123 LIGPSANISGKESGKIFADIKKQFGNNVTGLSDDAALT--GVDSTILDLSGE-SARILRQ 179 Query: 195 GGLEIETLKRAI 206 G + E L + Sbjct: 180 GAITKEELLACV 191 >gi|190570595|ref|YP_001974953.1| Sua5/YciO/YrdC/YwlC family protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019153|ref|ZP_03334960.1| Sua5/YciO/YrdC/YwlC family protein [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190356867|emb|CAQ54241.1| Sua5/YciO/YrdC/YwlC family protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995262|gb|EEB55903.1| Sua5/YciO/YrdC/YwlC family protein [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 195 Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats. Identities = 53/195 (27%), Positives = 92/195 (47%), Gaps = 5/195 (2%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 + + L PTETVY LA ++ +I ++Y IKKR PL VSD+ + Sbjct: 4 EVINAIKNNLLACFPTETVYALACNALGKESIEKIYRIKKRSQNKPLSIFVSDVDSLTNI 63 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132 A V ++L F PGP+T +L L + + + R+P ++ Sbjct: 64 AKVKEEYINLINYFSPGPMTYILPLQDNSILPNEFF--KDSIGIRIPDHPIAISILNELK 121 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192 P+ S N SG+ SI + + SI + + +I+ G+ESTI+++ +K +++L Sbjct: 122 TPVVATSINISGEKSICKARD-IPQSIKQHLSAVIEDDELVSGIESTIIDLTGDK-IKVL 179 Query: 193 RPGGLEIETLKRAIS 207 R G + ++T+ S Sbjct: 180 RKGKISLQTINNEFS 194 >gi|171779354|ref|ZP_02920318.1| hypothetical protein STRINF_01199 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281971|gb|EDT47402.1| hypothetical protein STRINF_01199 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 199 Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats. Identities = 61/188 (32%), Positives = 88/188 (46%), Gaps = 8/188 (4%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 E L G + +PTETVYGL + N A+ +Y +K RP + +V+D + + Sbjct: 6 EILQTGGAVILPTETVYGLFAQAMNEEAVEHVYRLKCRPKDKAMNLNVADYETILAFSKN 65 Query: 77 DPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHP 134 P L L F PGPLT++L + + + L T FR+P T LI+ G P Sbjct: 66 QPTYLKKLYDAFLPGPLTIILQ--ANDRVPAWINSGLSTIGFRIPKHPQTLALIKETG-P 122 Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194 L PSAN SGQ S + + D S G++STI+++ + RILR Sbjct: 123 LIGPSANISGQESGKVFAQ-IQKQFDNSVEGFADD-SSITGVDSTILDLSGD-FARILRQ 179 Query: 195 GGLEIETL 202 G + E L Sbjct: 180 GAITKEDL 187 >gi|21910337|ref|NP_664605.1| hypothetical protein SpyM3_0801 [Streptococcus pyogenes MGAS315] gi|28895912|ref|NP_802262.1| hypothetical protein SPs1000 [Streptococcus pyogenes SSI-1] gi|21904533|gb|AAM79408.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315] gi|28811162|dbj|BAC64095.1| hypothetical protein [Streptococcus pyogenes SSI-1] Length = 196 Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats. Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 6/188 (3%) Query: 16 CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75 +++G + +PTETVYGL + + A+ +Y++K+RP + +V+D + + + Sbjct: 5 ASIIESGDALVLPTETVYGLFAKALDEKAVNAVYDLKQRPRDKAMNLNVADFNSILAFSK 64 Query: 76 VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHP 134 P L L + F PGPLT++L + + + L T FR+P + P Sbjct: 65 EQPRYLKKLYQAFLPGPLTIILK--ANDQVPYWINSGLSTVGFRLPNHPITAALIQKTGP 122 Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194 L PSAN SG+ S HI+ + D ++ G +STI+++ E+ V ILR Sbjct: 123 LIGPSANLSGKASGRVFDHIMQDFDFQVFGYADDPFLT--GKDSTILDLSGERAV-ILRQ 179 Query: 195 GGLEIETL 202 G + E L Sbjct: 180 GAITKEEL 187 >gi|330445591|ref|ZP_08309243.1| yrdC domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489782|dbj|GAA03740.1| yrdC domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 206 Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats. Identities = 40/196 (20%), Positives = 80/196 (40%), Gaps = 4/196 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +++A E + G + PT++ Y L N A+ R+ +I++ + D+S Sbjct: 14 ARLIKQAVEIIKNGGVVVYPTDSGYALGCQLENKAALERICQIRRLNEKHNFTLLCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + VD ++ L + PG T + L A KT RVP L Sbjct: 74 ELSLYTRVDNVAFRLLRNNTPGAYTFIFKGTKEVP-RRLMNAKRKTIGIRVPDNAIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL S G + + + + + LI+ GG +T+++ + Sbjct: 133 LEALGEPLMSTSLILPGNDTTESDPDEIRDKLEHAVDLIMHGGYLGE-QPTTVIDF-SDG 190 Query: 188 KVRILRPGGLEIETLK 203 ++ ++R G ++ + Sbjct: 191 EIEVVRVGAGDVTPFE 206 >gi|225631196|ref|ZP_03787894.1| Sua5/YciO/YrdC/YwlC family protein [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225591104|gb|EEH12288.1| Sua5/YciO/YrdC/YwlC family protein [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 195 Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats. Identities = 56/197 (28%), Positives = 96/197 (48%), Gaps = 5/197 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + K + L + PTETVY LA ++ + +I ++Y+IKKR PL VSDI + Sbjct: 2 VSKIINAIQNNLLVCFPTETVYALACNALDNESIGKIYQIKKRSQNKPLSIFVSDIYNLT 61 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130 K A V + L F PGP+ +L L + + + R+P ++ Sbjct: 62 KIAKVKERYIDLINHFSPGPIAYILPLKNNNILPNEFF--KDSIGIRIPEHPIAISILNK 119 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 P+ S N SG+ S+ + SI + + ++I+ G+ESTI+++ E K++ Sbjct: 120 LKVPIVATSTNISGKESVCKAND-IPQSIKQHLSVVIEDDELVSGIESTIIDLT-EDKIK 177 Query: 191 ILRPGGLEIETLKRAIS 207 +LR G + ++T+ A S Sbjct: 178 VLREGAISLQTVNNAFS 194 >gi|301064000|ref|ZP_07204465.1| Sua5/YciO/YrdC/YwlC family protein [delta proteobacterium NaphS2] gi|300441911|gb|EFK06211.1| Sua5/YciO/YrdC/YwlC family protein [delta proteobacterium NaphS2] Length = 209 Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats. Identities = 49/185 (26%), Positives = 82/185 (44%), Gaps = 12/185 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + E L+ G IA PT+T YG+ D N I+ +Y +K RP P ++ + Sbjct: 28 IDRVSEILEQGGVIAYPTDTFYGIGCDLYNKKGIQHIYRLKNRPLKKPFSFVCDGLNEIS 87 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130 K+A V + K PGP T +L+ T + + KT RVP T+ ++ T Sbjct: 88 KYALVSNYAYKTMKRLLPGPYTFILE--GTRLVPKIMLTKRKTVGIRVPNNNITRAIVRT 145 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G P+ SA + + + +IIDGG+ S++V++ ++ Sbjct: 146 LGRPIISTSAGFDE-------PRAIEDAYGVNLDVIIDGGL-LYPNPSSVVSLIDDEP-E 196 Query: 191 ILRPG 195 I+R G Sbjct: 197 IIREG 201 >gi|271502209|ref|YP_003335235.1| SUA5/yciO/yrdC domain-containing protein [Dickeya dadantii Ech586] gi|270345764|gb|ACZ78529.1| SUA5/yciO/yrdC domain protein [Dickeya dadantii Ech586] Length = 189 Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats. Identities = 52/196 (26%), Positives = 81/196 (41%), Gaps = 11/196 (5%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 MS +S L + L IA PTE V+GL D + A+ RL +K+RP LI Sbjct: 1 MSNVNSKDLTLLLQQLREERVIAYPTEAVFGLGCDPDSEVAVERLLALKQRPREKGLILI 60 Query: 64 VSDISMVKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 ++ + + + LS WPGP+T V+ + T T + RV Sbjct: 61 AANFQQLASYIELSALSDMQRQTIFATWPGPVTWVIPARAET--PDWLTGRFNSLAVRVS 118 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 +L +G PL SAN SGQ V+ + ++ + P +++G + S Sbjct: 119 DHPLVAQLCLAFGKPLVSTSANLSGQPPCRTVREV-TAQFGESFP-VLNGEVGGRLNPSE 176 Query: 180 IVNVQCEKKVRILRPG 195 I + +LR G Sbjct: 177 IRDALTG---EMLRQG 189 >gi|215430188|ref|ZP_03428107.1| hypothetical protein MtubE_05805 [Mycobacterium tuberculosis EAS054] gi|289753378|ref|ZP_06512756.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis EAS054] gi|289693965|gb|EFD61394.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis EAS054] Length = 188 Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats. Identities = 46/185 (24%), Positives = 80/185 (43%), Gaps = 5/185 (2%) Query: 26 AIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLSLHLA 84 +PT+TVYG+ D+ + +A+ L K R P+ V ++ S+ + L Sbjct: 2 VMPTDTVYGIGADAFDSSAVAALLSAKGRGRDMPVGVLVGSWHTIEGLVYSMPDGARELI 61 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSG 144 + FWPG L+LV+ + T R+P + P+A+ SAN SG Sbjct: 62 RAFWPGALSLVVVQAPSLQW--DLGDAHGTVMLRMPLHPVAIELLREVGPMAVSSANISG 119 Query: 145 QISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKR 204 + + S + + + +D G S+ STIV++ R+LR G + E + Sbjct: 120 HPPPVDAEQA-RSQLGDHVAVYLDAGPSEQQAGSTIVDLTGATP-RVLRQGPVSTERIAE 177 Query: 205 AISVE 209 + V+ Sbjct: 178 VLGVD 182 >gi|84488926|ref|YP_447158.1| hypothetical protein Msp_0096 [Methanosphaera stadtmanae DSM 3091] gi|84372245|gb|ABC56515.1| conserved hypothetical protein [Methanosphaera stadtmanae DSM 3091] Length = 208 Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats. Identities = 60/214 (28%), Positives = 100/214 (46%), Gaps = 11/214 (5%) Query: 1 MQIMSITD---SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 M+++ I D N L K L G + PT+T+YG+ VD N A++++Y KKR Sbjct: 1 MEMVYIVDNPNKNELNKIRSMLGQGKLVVYPTDTIYGIGVDINNIDAVKKVYMTKKRSYD 60 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 P+ + DI+ VK+ A V H+ PGP TL+L ++I + TAN Sbjct: 61 KPISICLHDITQVKEVAIVTDEIEHIINELLPGPYTLLL--RKKSNIPDILTANTNIIGI 118 Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P T L + + P+ SAN S + N+ + + I + ID G Sbjct: 119 RIPDNKITHSLTKDF--PITSTSANLSNIQTPDNITD-IKKQLGDNIDIYIDCGKKIKNQ 175 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL 210 STI+++ + +I+R E + + + ++L Sbjct: 176 PSTIIDLTQQNP-KIIRQ-HKNNELINKILKIDL 207 >gi|313200705|ref|YP_004039363.1| sua5/ycio/yrdc/ywlc family protein [Methylovorus sp. MP688] gi|312440021|gb|ADQ84127.1| Sua5/YciO/YrdC/YwlC family protein [Methylovorus sp. MP688] Length = 209 Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats. Identities = 43/192 (22%), Positives = 75/192 (39%), Gaps = 4/192 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A E L G +A PT++ Y L N A R+ I+ + ++S Sbjct: 14 PRLIAQAVEILRNGGVVAYPTDSSYALGCVVGNKDAQDRIRAIRGVDDDHLFTLVCRNLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD L K PG T +L L T RVP T+ L Sbjct: 74 ELAVYAQVDNSQFRLLKANTPGQYTFILKATREVP-RRLQHPKRSTLGLRVPDHAVTQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E PL S G+ + N + + ++ L+ID G +T++++ + Sbjct: 133 LEALDEPLLSMSLQLPGEEDVLNEAWEIRDRLEHQLGLVIDAGAC-SATPTTVIDLTGDS 191 Query: 188 KVRILRPGGLEI 199 + ++R G + Sbjct: 192 PI-LVRAGAGSL 202 >gi|225350880|ref|ZP_03741903.1| hypothetical protein BIFPSEUDO_02454 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225158336|gb|EEG71578.1| hypothetical protein BIFPSEUDO_02454 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 238 Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats. Identities = 60/214 (28%), Positives = 99/214 (46%), Gaps = 7/214 (3%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M + +L +A E + G I IPT+TVYG+A D RN AIR+++ K+RP L Sbjct: 19 MSEIRTISDESLAQAVEIVRDGGLIVIPTDTVYGVACDPRNIEAIRKVFAAKQRPKYKSL 78 Query: 61 ICHVSDISMVKKHASVDPLSL-HLAKLFWPG---PLTLVLDLLSTTDIHPLSTANLKTAC 116 + I ++K P+ L L+ +F PG P+ + D + + T Sbjct: 79 QVLLPSIESMEKLHLDLPVPLNRLSAMFMPGAFSPIAVADDDCTLATVRTDPATGKVTQG 138 Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P + PLA SANRSG S V + + + + L +DGG + + Sbjct: 139 VRIPNSTAALRVLRATGPLAATSANRSGDESAQTVDEAVQA-LGDAVDLYLDGGATPGHV 197 Query: 177 ESTIV--NVQCEKKVRILRPGGLEIETLKRAISV 208 ST+V + + ILR G + +++A+++ Sbjct: 198 ASTVVAADPHGRDGIAILREGVIHEPVIRKALTL 231 >gi|289706367|ref|ZP_06502725.1| Sua5/YciO/YrdC/YwlC family protein [Micrococcus luteus SK58] gi|289556862|gb|EFD50195.1| Sua5/YciO/YrdC/YwlC family protein [Micrococcus luteus SK58] Length = 243 Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats. Identities = 58/199 (29%), Positives = 91/199 (45%), Gaps = 5/199 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 NA+ +A E L + +PT+TVYG+ D+ +P A+ L K R P ++D Sbjct: 17 ENAVARAREVLADRGCVVLPTDTVYGIGADAFSPLAVAVLLAAKGRSRTMPPPVLIADRR 76 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 ++ A V + LA+ FWPG LTL+L T T T RVP + Sbjct: 77 VMSGLAYDVPEEAEALAERFWPGALTLILKSQPTLTWDLGET--RGTVALRVPDDAVARE 134 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + P+A+ SANR+G + T S + + + L +D G + STIV+ Sbjct: 135 LLYAVGPMAVSSANRTGMDAATTAD-AARSMLGESVALYLDAGPRESRDPSTIVDCTV-T 192 Query: 188 KVRILRPGGLEIETLKRAI 206 R+ R G + +E L+ + Sbjct: 193 PFRVARQGSVPLEELRAVV 211 >gi|25011158|ref|NP_735553.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus agalactiae NEM316] gi|76798420|ref|ZP_00780660.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus agalactiae 18RS21] gi|77410541|ref|ZP_00786902.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus agalactiae CJB111] gi|77413279|ref|ZP_00789475.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus agalactiae 515] gi|23095557|emb|CAD46766.1| Unknown [Streptococcus agalactiae NEM316] gi|76586215|gb|EAO62733.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus agalactiae 18RS21] gi|77160666|gb|EAO71781.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus agalactiae 515] gi|77163489|gb|EAO74439.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus agalactiae CJB111] gi|319745081|gb|EFV97407.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus agalactiae ATCC 13813] Length = 198 Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats. Identities = 54/191 (28%), Positives = 94/191 (49%), Gaps = 6/191 (3%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 + L+ + +PTETVYG+ + + A+ +YE+KKRP + ++ D + K++ Sbjct: 6 QILEDHGAVIMPTETVYGIFAKALSEEAVNHVYELKKRPRDKAMNLNICDFETILKYSKN 65 Query: 77 DPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPL 135 P L L F PGPLT++L+ ++ ++ + L + FR+P + PL Sbjct: 66 QPTYLKQLYDAFLPGPLTIILE--ASQEVPHWINSGLLSVGFRMPKHPVTLDMIANHGPL 123 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 PSAN SG S + ++ I D + G++STI+++ + +V+ILR G Sbjct: 124 IGPSANISGCDSGRVFSE-IQKQFNHQVLGIEDD-KALTGVDSTIIDLSGD-RVKILRQG 180 Query: 196 GLEIETLKRAI 206 + E L I Sbjct: 181 AITQEVLTATI 191 >gi|161506044|ref|YP_001573156.1| putative ribosome maturation factor [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160867391|gb|ABX24014.1| hypothetical protein SARI_04225 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 200 Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats. Identities = 51/193 (26%), Positives = 80/193 (41%), Gaps = 8/193 (4%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 Q+ + + ++ A + L+ IA PTE V+G+ D + TA+ RL E+K+RP LI Sbjct: 10 QVNNNLPTGSIAAAVDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLELKQRPVDKGLI 69 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 + +K + L+ K WPGP+T V +TT T + R Sbjct: 70 LIAASFEQLKPYIDDSILTTAQRKAVFDCWPGPVTFVFPASATT--PRWLTGRFDSLAVR 127 Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 V L YG PL SAN SG V+ + + + P++ +G Sbjct: 128 VTDHPLVVALCNAYGKPLVSTSANLSGLPPCRTVEEV-RAQFGDDFPMV-EGATGGRLNP 185 Query: 178 STIVNVQCEKKVR 190 S I + + R Sbjct: 186 SEIRDALTGELFR 198 >gi|304314044|ref|YP_003849191.1| Sua5-related protein [Methanothermobacter marburgensis str. Marburg] gi|302587503|gb|ADL57878.1| Sua5-related protein [Methanothermobacter marburgensis str. Marburg] Length = 207 Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats. Identities = 53/209 (25%), Positives = 94/209 (44%), Gaps = 11/209 (5%) Query: 1 MQIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56 M I I N + +A ++ G + PT+T+YGL V++ + ++R+L+ IK R Sbjct: 1 MIIRKIRRENPSQKVIDEAISVMERGGAVIYPTDTIYGLGVNALDGESVRKLFRIKGRAP 60 Query: 57 MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 P+ VS +S + + + ++ + + PGP T++L+ + + T Sbjct: 61 DKPVSICVSGVSEIPRFSKPSEHAMEVIRRILPGPYTVLLE--KKDLVPDILTGGSSKVG 118 Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 RVP + I P+ SAN SG+ N I+ E+ L++D G Sbjct: 119 VRVPDDEVCRRISAR-FPVTATSANISGKQPSANPHDIMGDL---EVDLMLDAGECDSTE 174 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRA 205 ST+V++ E +LR G + E + R Sbjct: 175 PSTVVDLTVEPPA-VLRMGRGDPEVIHRI 202 >gi|298372929|ref|ZP_06982919.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroidetes oral taxon 274 str. F0058] gi|298275833|gb|EFI17384.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroidetes oral taxon 274 str. F0058] Length = 212 Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats. Identities = 45/191 (23%), Positives = 76/191 (39%), Gaps = 8/191 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP-LICHVSD 66 + + + K E L G I PT+TVY D +P AI ++ +K + D Sbjct: 22 NEHQIAKVIEVLKNGGVIIYPTDTVYAFGCDIFHPKAIEKICRLKHLNPQKSRMAIVCQD 81 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125 +S + +A + + L K PG T +L+ P + KT R+P Sbjct: 82 LSNISNYAKISTDTFKLLKKNLPGAFTFLLNGSRQL---PSILKDRKTIGIRMPKNNIAL 138 Query: 126 KLIETYGHPLAIPSANRSGQIS-ITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 ++ G+P+ S I+ +L+ + ++IDGG STIV+ Sbjct: 139 DIVRQLGNPIFTTSVIAIDDITEYETDPELLTEKYEDVVDMVIDGGFGD-NTPSTIVDCT 197 Query: 185 CEKKVRILRPG 195 + I+R G Sbjct: 198 QNEP-EIIRQG 207 >gi|149370609|ref|ZP_01890298.1| hypothetical protein SCB49_14135 [unidentified eubacterium SCB49] gi|149356160|gb|EDM44717.1| hypothetical protein SCB49_14135 [unidentified eubacterium SCB49] Length = 186 Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats. Identities = 55/186 (29%), Positives = 82/186 (44%), Gaps = 3/186 (1%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + KA E L G I PT+TV+G+ D+ NP AI ++Y +KKR LIC V D Sbjct: 2 KEEIFKALEVLKKGGLILYPTDTVWGIGCDATNPEAIAKVYALKKRVETKSLICLVHDFK 61 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 M+ + P + + P T+V D I A T FRV F+K L Sbjct: 62 MLNQFVEDIPEVAYDILKYAEKPTTIVYD--DPIRIAENIVAPDNTLGFRVTDDAFSKNL 119 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + + P+ SAN SGQ + + K I + ++ G S I+ + + Sbjct: 120 VRKFRWPVVATSANVSGQKTPKSFKDISQEILDGVDYVVNLNRNKPSGKPSAIIKLSKDG 179 Query: 188 KVRILR 193 V+I+R Sbjct: 180 GVKIIR 185 >gi|304396084|ref|ZP_07377966.1| Sua5/YciO/YrdC/YwlC family protein [Pantoea sp. aB] gi|304356453|gb|EFM20818.1| Sua5/YciO/YrdC/YwlC family protein [Pantoea sp. aB] Length = 206 Score = 162 bits (412), Expect = 5e-38, Method: Composition-based stats. Identities = 45/188 (23%), Positives = 75/188 (39%), Gaps = 4/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A ++L+ G I PT++ Y L A+ R+ I++ + D+S Sbjct: 14 PRLINQAVDYLNKGSVIVYPTDSGYALGCRLEEKGAMERICRIRQLDGHHNFTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + ++ V + L K PG T +L L KT RVP L Sbjct: 74 ELSVYSQVGNSAFRLLKNNTPGNYTFILKATKEVP-RRLMNEKRKTIGLRVPSNPVALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E P+ S G + + SI K + LIIDGG + +T+V++ + Sbjct: 133 LEALNQPMMSTSLILPGNDFTESDPEEIQHSIGKLVDLIIDGG-TLGQQPTTVVDLTTDA 191 Query: 188 KVRILRPG 195 I+R G Sbjct: 192 P-EIVREG 198 >gi|237742936|ref|ZP_04573417.1| SUA5 protein [Fusobacterium sp. 4_1_13] gi|229430584|gb|EEO40796.1| SUA5 protein [Fusobacterium sp. 4_1_13] Length = 217 Score = 162 bits (412), Expect = 5e-38, Method: Composition-based stats. Identities = 61/183 (33%), Positives = 91/183 (49%), Gaps = 9/183 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 + G I PT+TVYGL N +I +Y K R +PLI +S + V++ A V Sbjct: 25 IKKGSLIIYPTDTVYGLGAIVTNEQSINNVYLAKSRSFSSPLIALLSSVDKVEEVAYVPD 84 Query: 79 ----LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGH 133 L LAK FWPG LT++L I + + T R+P K+I+ G Sbjct: 85 KNRELLKKLAKAFWPGALTVIL--KKKKHIPSIMVSGGDTIGVRIPNFDLAIKIIDLAGG 142 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 LA SAN SG+ + + LS +I ++ ++ID G K+G STI+++ + +ILR Sbjct: 143 ILATTSANISGEATPKSYDE-LSEAIKSKVDILIDSGECKLGEASTIIDLTSDVP-KILR 200 Query: 194 PGG 196 G Sbjct: 201 KGA 203 >gi|50914207|ref|YP_060179.1| hypothetical protein M6_Spy0861 [Streptococcus pyogenes MGAS10394] gi|50903281|gb|AAT86996.1| Sua5 [Streptococcus pyogenes MGAS10394] Length = 206 Score = 162 bits (412), Expect = 5e-38, Method: Composition-based stats. Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 6/188 (3%) Query: 16 CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75 +++G + +PTETVYGL + + A+ +Y++K+RP + +V+D + + + Sbjct: 15 ASIIESGDALVLPTETVYGLFAKALDEKAVNAVYDLKQRPRDKAMNLNVADFNSILAFSK 74 Query: 76 VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHP 134 P L L + F PGPLT++L + + + L T FR+P + P Sbjct: 75 EQPRYLKKLYQAFLPGPLTIILK--ANDQVPYWINSGLSTVGFRLPSHPITAALIQKTGP 132 Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194 L PSAN SG+ S HI+ + D ++ G +STI+++ E+ V ILR Sbjct: 133 LIGPSANLSGKASGRVFDHIMQDFDFQVFGYADDPFLT--GKDSTILDLSGERAV-ILRQ 189 Query: 195 GGLEIETL 202 G + E L Sbjct: 190 GAITKEEL 197 >gi|163752812|ref|ZP_02159936.1| hypothetical protein KAOT1_11667 [Kordia algicida OT-1] gi|161326544|gb|EDP97869.1| hypothetical protein KAOT1_11667 [Kordia algicida OT-1] Length = 186 Score = 162 bits (412), Expect = 5e-38, Method: Composition-based stats. Identities = 53/187 (28%), Positives = 91/187 (48%), Gaps = 5/187 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++K + L G I PT+TV+GL D+ N A+ ++Y++K R LIC VSDI Sbjct: 2 TEEIQKTFDELQLGNTILYPTDTVWGLGCDATNSEAVAKIYQLKNREESKALICLVSDIR 61 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 M++++ P + P T++ D I A T R+P F +KL Sbjct: 62 MLERYVENIPDVTYDLLEAANRPTTIIYDNP--VGIAKNLVAADNTLAIRIPDDKFCQKL 119 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL-ESTIVNVQCE 186 I + P+ SAN SGQ + + +S+ I + I++ K + STI+ ++ Sbjct: 120 IRKFKRPIVSTSANISGQPTPKSFDE-ISNEIKTNVDYIVNLKDDKKAVKPSTIIQLRSN 178 Query: 187 KKVRILR 193 +++I+R Sbjct: 179 GEIKIIR 185 >gi|156932272|ref|YP_001436188.1| putative ribosome maturation factor [Cronobacter sakazakii ATCC BAA-894] gi|212277675|sp|A7MPF3|RIMN_ENTS8 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|156530526|gb|ABU75352.1| hypothetical protein ESA_00043 [Cronobacter sakazakii ATCC BAA-894] Length = 190 Score = 162 bits (412), Expect = 5e-38, Method: Composition-based stats. Identities = 48/187 (25%), Positives = 77/187 (41%), Gaps = 8/187 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 ++A+ + L IA PTE V+G+ D + TA++RL E+K+RP LI ++ Sbjct: 6 PADAISFIVDVLKKEQVIAYPTEAVFGVGCDPDSETAVKRLLELKQRPMEKGLILIAANF 65 Query: 68 SMVKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF- 123 +K + L+ + WPGP+T V +T T + RV Sbjct: 66 DQLKPYIDDAALTAEQREAVFARWPGPVTFVFPAKPST--PRWLTGRFDSLAVRVTNHPQ 123 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 L E +G PL SAN SG + +L + + P ++ G S I + Sbjct: 124 VIALCEAFGKPLVSTSANLSGLEPCRTAQEVL-AQFGDDFP-VLHGATGGRQNPSEIRDA 181 Query: 184 QCEKKVR 190 + R Sbjct: 182 LTGELFR 188 >gi|29349536|ref|NP_813039.1| hypothetical protein BT_4128 [Bacteroides thetaiotaomicron VPI-5482] gi|253570092|ref|ZP_04847501.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|298385032|ref|ZP_06994591.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 1_1_14] gi|29341445|gb|AAO79233.1| putative Sua5/yciO/yrdC family protein [Bacteroides thetaiotaomicron VPI-5482] gi|251840473|gb|EES68555.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|298262176|gb|EFI05041.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 1_1_14] Length = 204 Score = 162 bits (412), Expect = 5e-38, Method: Composition-based stats. Identities = 48/202 (23%), Positives = 80/202 (39%), Gaps = 9/202 (4%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICH 63 + L++ + L+ G I PT+T+Y + AI R+ IK P N L Sbjct: 8 KNNNPQDLQRVTDILNDGGLIIYPTDTMYAIGCHGLKERAIERICRIKDIDPRKNNLSII 67 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-G 122 D+S + ++A V L K PGP T +L+ T+ P N K R+P Sbjct: 68 CYDLSSISEYAKVGNNEFKLMKHNLPGPFTFILN---GTNRLPKIFRNRKEVGIRMPDNN 124 Query: 123 FTKKLIETYGHPLAIPSANRSGQIS--ITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 +++ P+ + ++ + L+IDGGI I ST+ Sbjct: 125 IIREIARLLDAPIMTTTLPYDEHEDLEYMTDPELIDEKFGDIVDLVIDGGIGGI-EPSTV 183 Query: 181 VNVQCEKKVRILRPGGLEIETL 202 V ++ I+R G +E + Sbjct: 184 VKCTEDEP-EIVRQGKGWLEGI 204 >gi|56808654|ref|ZP_00366379.1| COG0009: Putative translation factor (SUA5) [Streptococcus pyogenes M49 591] gi|209559425|ref|YP_002285897.1| Sua5/YciO/YrdC family protein [Streptococcus pyogenes NZ131] gi|209540626|gb|ACI61202.1| Sua5/YciO/YrdC family protein [Streptococcus pyogenes NZ131] Length = 196 Score = 162 bits (412), Expect = 5e-38, Method: Composition-based stats. Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 6/188 (3%) Query: 16 CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75 +++G + +PTETVYGL + + A+ +Y++K+RP + +V+D + + + Sbjct: 5 ASIIESGDALVLPTETVYGLFAKALDEKAVNAVYDLKQRPRDKAMNLNVADFNSILAFSK 64 Query: 76 VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHP 134 P L L + F PGPLT++L + + + L T FR+P + P Sbjct: 65 EQPRYLKKLYQAFLPGPLTIILK--ANDQVPYWINSGLSTVGFRLPSHPITAALIQKTGP 122 Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194 L PSAN SG+ S HI+ + D ++ G +STI+++ E+ V ILR Sbjct: 123 LIGPSANLSGKASGRVFDHIMQDFDFQVFGYADDPFLT--GKDSTILDLSGERAV-ILRQ 179 Query: 195 GGLEIETL 202 G + E L Sbjct: 180 GAITKEEL 187 >gi|50121220|ref|YP_050387.1| hypothetical protein ECA2292 [Pectobacterium atrosepticum SCRI1043] gi|49611746|emb|CAG75195.1| conserved hypothetical protein [Pectobacterium atrosepticum SCRI1043] Length = 206 Score = 162 bits (412), Expect = 5e-38, Method: Composition-based stats. Identities = 45/188 (23%), Positives = 72/188 (38%), Gaps = 4/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ EFL G I PT++ Y L A+ R+ I+ + + D+S Sbjct: 14 PRLINQSVEFLHKGGVIVYPTDSGYALGCMLGEKNALERICRIRDLGSDHNFTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD + L K PG T +L L KT RVP L Sbjct: 74 ELSTYAHVDNAAFRLIKNNTPGNYTFILKATKEVP-RRLMNDKRKTIGLRVPSNPIALDL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + PL + G + + + K + LII GG S +T++++ E Sbjct: 133 LAALNEPLMSTTLMLQGNDFAESDPEEIQERLGKLVDLIIHGG-SLGQQPTTVIDLT-ES 190 Query: 188 KVRILRPG 195 R+ R G Sbjct: 191 VPRVAREG 198 >gi|238792973|ref|ZP_04636603.1| Ribosomal modification protein RimN [Yersinia intermedia ATCC 29909] gi|238727827|gb|EEQ19351.1| Ribosomal modification protein RimN [Yersinia intermedia ATCC 29909] Length = 190 Score = 162 bits (412), Expect = 5e-38, Method: Composition-based stats. Identities = 48/187 (25%), Positives = 74/187 (39%), Gaps = 8/187 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 +S AL L +A PTE V+GL D + A+ L +K+RP LI ++ Sbjct: 6 NSGALSDVLRALQQEEVVAYPTEAVFGLGCDPDSEKAVNALLALKQRPWQKGLILIAANY 65 Query: 68 SMVKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 +K + LS+ + WPGP+T V+ + T T + RV Sbjct: 66 EQLKPYVDDSTLSMAQRETLFSCWPGPVTWVIPACANT--PRWLTGTFGSLAVRVSDHPL 123 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 ++L YG PL SAN SG + +P ++ G + S I + Sbjct: 124 VQQLCSQYGKPLVSTSANLSGHEPCRTEAEV-RMQFGPSLP-VLSGEVGGRLNPSEIRDA 181 Query: 184 QCEKKVR 190 K+ R Sbjct: 182 LTGKQFR 188 >gi|195336176|ref|XP_002034718.1| GM19771 [Drosophila sechellia] gi|194126688|gb|EDW48731.1| GM19771 [Drosophila sechellia] Length = 325 Score = 162 bits (412), Expect = 5e-38, Method: Composition-based stats. Identities = 66/199 (33%), Positives = 99/199 (49%), Gaps = 9/199 (4%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 + ++ D AL+ A + L G IA+PT+TVYGLA D+ N TAI+RLYEIK R P+ Sbjct: 109 VCAVGDKAALQLARQCLLGGQVIALPTDTVYGLACDANNETAIQRLYEIKGRDEHKPVAI 168 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC- 121 V +IS +++ LS L PGPLT+V++ L+ + K R+P Sbjct: 169 CVHNISALRRFGQAAHLSDELLTRLLPGPLTIVIERTVQLSNRFLNPSTSK-IGIRIPDF 227 Query: 122 GFTKKLIETYG-HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI----SKIGL 176 F + L + PLA+ SANRS S V S+ ++ + D G + L Sbjct: 228 NFMRDLCGVWQEQPLALTSANRSSAPSSLQVSE--FRSLWPQLGAVFDAGRIGLTEERRL 285 Query: 177 ESTIVNVQCEKKVRILRPG 195 ST++++ I+R G Sbjct: 286 ASTVIDLATPGYFEIVRAG 304 >gi|330720127|gb|EGG98531.1| Sua5 YciO YrdC YwlC family protein [gamma proteobacterium IMCC2047] Length = 182 Score = 162 bits (412), Expect = 5e-38, Method: Composition-based stats. Identities = 50/187 (26%), Positives = 83/187 (44%), Gaps = 7/187 (3%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + D++ L A L G +A PTE V+GL D N A+R+L +K+RP LI + Sbjct: 1 MNDAD-LHNAVVALRNGELVAYPTEAVWGLGCDPMNEAAVRKLLNLKRRPVEKGLILVAA 59 Query: 66 DISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123 I + + S L H + WPG T V+ + T + T + RV Sbjct: 60 SIKQFEPYLSTINLEQRHQLEASWPGFQTWVVPVPDT--VPYWLTGQHSSIALRVSTHPL 117 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 +KL + + PL SAN +G + + + + S + I+ G + S+I+++ Sbjct: 118 IQKLCQAFAGPLVSTSANPAGHLPALSAEEV--HSYFDDQAFIVPGELGGADAPSSIIDL 175 Query: 184 QCEKKVR 190 K +R Sbjct: 176 VTGKSLR 182 >gi|311742467|ref|ZP_07716276.1| Sua5/YciO/YrdC/YwlC family protein [Aeromicrobium marinum DSM 15272] gi|311314095|gb|EFQ84003.1| Sua5/YciO/YrdC/YwlC family protein [Aeromicrobium marinum DSM 15272] Length = 207 Score = 162 bits (412), Expect = 5e-38, Method: Composition-based stats. Identities = 42/203 (20%), Positives = 80/203 (39%), Gaps = 7/203 (3%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 + + I N + +A E + +G IA PT++ Y L + A+ R+ I+ Sbjct: 3 RFIDIHPENPQARNVEQAVEIIRSGGLIAYPTDSGYALGAQIGSADALTRIRSIRDLDDK 62 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 + D + + VD K PGP T +L L A +T Sbjct: 63 HHFTLVCHDFAQLGHVVQVDNAVFRAVKAATPGPYTFILPATREVP-KRLLQAKKRTVGV 121 Query: 118 RVPCGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P + L+ G PL + G+ ++ ++ I ++D G +G Sbjct: 122 RIPDHVVTQALVTALGEPLLSSTLILPGETDPMTTAWEIAEALDGRIEAVVDAGDEVVGR 181 Query: 177 ESTIVNVQCEKKVRILRPGGLEI 199 +T+V++ + ++LR G ++ Sbjct: 182 PTTVVDL-SDGHAQVLREGAGDV 203 >gi|166363887|ref|YP_001656160.1| hypothetical protein MAE_11460 [Microcystis aeruginosa NIES-843] gi|166086260|dbj|BAG00968.1| hypothetical protein MAE_11460 [Microcystis aeruginosa NIES-843] Length = 213 Score = 162 bits (412), Expect = 5e-38, Method: Composition-based stats. Identities = 48/203 (23%), Positives = 90/203 (44%), Gaps = 10/203 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++++ C L G + PT+TVY + D +A+ R+ +IK+ PL S +S Sbjct: 14 QRSIQEICHALKNGAIMLYPTDTVYAIGCDLNVKSAVERVRQIKQLSNDKPLTFLCSSLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKK 126 + ++A V + + + PGP T +L +T + + KT RVP + Sbjct: 74 NISEYAVVSDYAYKIMRRVIPGPYTFLLP--ATKLVPKVVMNPKRKTTGIRVPDHVICRT 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHI----LSSSICKEIPLIIDGGISKIGLESTIVN 182 ++ET +P+ SA+ Q K + L ++ + LII+ G + STIV+ Sbjct: 132 ILETLENPIISSSAHLPDQEGDFPTKGLESARLFDALDHIVDLIIEDGSAPGSEVSTIVD 191 Query: 183 VQCEKKVRILRPGGLEIETLKRA 205 ++ + + G L++ Sbjct: 192 FTGDQPDIVRQGLGWP--ELQQW 212 >gi|90406707|ref|ZP_01214900.1| Sua5/YciO/YrdC family protein [Psychromonas sp. CNPT3] gi|90312160|gb|EAS40252.1| Sua5/YciO/YrdC family protein [Psychromonas sp. CNPT3] Length = 187 Score = 162 bits (412), Expect = 5e-38, Method: Composition-based stats. Identities = 48/187 (25%), Positives = 88/187 (47%), Gaps = 7/187 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +L A + L+ IA PTE+V+GL D +P A++++ +IK+RPA LI ++ Sbjct: 3 KTSLTNALKVLNNQGVIAYPTESVFGLGCDPDSPDALQKILKIKQRPAHKGLILIAANTK 62 Query: 69 MVKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 ++ +A P + + WPGP+T ++ + ++ PL + ++ RV Sbjct: 63 QLQDYADFSQLSPAQIARMQATWPGPVTWIVP--AKKNLQPLIKGDFESVAVRVTAHPIV 120 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSIC-KEIPLIIDGGISKIGLESTIVNV 183 +L + P+ SAN SGQ + N + + + I+ +S G S I + Sbjct: 121 SELCTLFNKPIISTSANISGQDACQNAAQVQKMFVDTPLLETIVQASVSAFGSPSQIYDA 180 Query: 184 QCEKKVR 190 K++R Sbjct: 181 LTGKRLR 187 >gi|291568165|dbj|BAI90437.1| hypothetical protein [Arthrospira platensis NIES-39] Length = 222 Score = 162 bits (412), Expect = 5e-38, Method: Composition-based stats. Identities = 47/199 (23%), Positives = 85/199 (42%), Gaps = 13/199 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + L G + PT+TVY + D +A++++ +IK+ PL S +S + Sbjct: 17 IEQINDALKRGAVMLYPTDTVYAIGCDLTVKSAVQKVRQIKQISNDKPLTFLCSSLSNIA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKKLIE 129 +A V + K PG T VL +T + L + KT RVP ++E Sbjct: 77 DYAIVTDEAYRTIKKLIPGSYTFVLP--ATKQVPKLVMSPKRKTTGIRVPDHPVCLAILE 134 Query: 130 TYGHPLAIPSANRSGQISIT---------NVKHILSSSICKEIPLIIDGGISKIGLESTI 180 + G+P+ SA+ + + K L ++ + +I+D G STI Sbjct: 135 SLGNPVISTSAHIKEEDEPSALIRKIPQNYDKFQLFDALENLVDIIVDDGADLDYQVSTI 194 Query: 181 VNVQCEKKVRILRPGGLEI 199 +++ + V + R G E Sbjct: 195 IDLSADDPVLVRRGKGWEA 213 >gi|325955237|ref|YP_004238897.1| Sua5/YciO/YrdC/YwlC family protein [Weeksella virosa DSM 16922] gi|323437855|gb|ADX68319.1| Sua5/YciO/YrdC/YwlC family protein [Weeksella virosa DSM 16922] Length = 207 Score = 162 bits (412), Expect = 5e-38, Method: Composition-based stats. Identities = 51/197 (25%), Positives = 84/197 (42%), Gaps = 9/197 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP-LICHVSDI 67 A+ + E L G I P++TVYGL D N A+ L +K +D+ Sbjct: 14 EKAIDQVVEVLKQGGLIIYPSDTVYGLGCDITNYKAMENLARLKGVKLDKSQFSIVCNDL 73 Query: 68 SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-K 125 S + + + + K PGP T VL PL+ KT RVP + Sbjct: 74 SHLSNFTRPISNSTFKVLKRALPGPFTFVLQASGNL---PLAYKGKKTVGIRVPDHLVPR 130 Query: 126 KLIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 +++E G+P+A S +I T +++ K + ++ID G + S+I++ Sbjct: 131 RIVEKLGNPIASTSIYDEDEILEYTTDPELIAEKWDKLVDVVIDSGYGD-NVASSIIDAT 189 Query: 185 CEKKVRILRPGGLEIET 201 E ++ ILR G +I Sbjct: 190 -ENEMVILREGKGDINE 205 >gi|15675120|ref|NP_269294.1| hypothetical protein SPy_1143 [Streptococcus pyogenes M1 GAS] gi|19746090|ref|NP_607226.1| hypothetical protein spyM18_1103 [Streptococcus pyogenes MGAS8232] gi|71910678|ref|YP_282228.1| SUA5 protein [Streptococcus pyogenes MGAS5005] gi|306827353|ref|ZP_07460640.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pyogenes ATCC 10782] gi|13622279|gb|AAK34015.1| hypothetical protein SPy_1143 [Streptococcus pyogenes M1 GAS] gi|19748262|gb|AAL97725.1| hypothetical protein spyM18_1103 [Streptococcus pyogenes MGAS8232] gi|71853460|gb|AAZ51483.1| SUA5 protein [Streptococcus pyogenes MGAS5005] gi|304430500|gb|EFM33522.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pyogenes ATCC 10782] Length = 196 Score = 162 bits (412), Expect = 5e-38, Method: Composition-based stats. Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 6/188 (3%) Query: 16 CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75 +++G + +PTETVYGL + + A+ +Y++K+RP + +V+D + + + Sbjct: 5 ASIIESGDALVLPTETVYGLFAKALDEKAVNAVYDLKQRPRDKAMNLNVADFNSILAFSK 64 Query: 76 VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHP 134 P L L + F PGPLT++L + + + L T FR+P + P Sbjct: 65 EQPRYLKKLYQAFLPGPLTIILK--ANDQVPYWINSGLSTVGFRLPSHPITAALIQKTGP 122 Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194 L PSAN SG+ S HI+ + D ++ G +STI+++ E+ V ILR Sbjct: 123 LIGPSANLSGKASGRVFDHIMQDFDFQVFGYADDPFLT--GKDSTILDLSGERAV-ILRQ 179 Query: 195 GGLEIETL 202 G + E L Sbjct: 180 GAITKEEL 187 >gi|19705289|ref|NP_602784.1| SUA5 protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19713254|gb|AAL94083.1| SUA5 protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 217 Score = 162 bits (412), Expect = 5e-38, Method: Composition-based stats. Identities = 64/200 (32%), Positives = 97/200 (48%), Gaps = 10/200 (5%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +I I+D E + G I PT+TVYGL N +I +Y K R +PLI Sbjct: 9 KISDISDDKW-TLLSEEIKKGSLIIYPTDTVYGLGAIVTNEQSINNIYLAKSRSFSSPLI 67 Query: 62 CHVSDISMVKKHASVDPLSLHLAKL----FWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 +S + V++ A V + L K FWPG LT++L S I + + T Sbjct: 68 ALLSSVDKVEEVAYVSDKNRELLKKLSKVFWPGALTVIL--KSKEHIPSIMVSGGDTIGV 125 Query: 118 RVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P K+I+ G LA SAN SG+ + + LS +I ++ ++ID G K+G Sbjct: 126 RIPNLDLAIKIIDLAGGILATTSANISGEATPKSYDE-LSEAIKSKVDILIDSGKCKLGE 184 Query: 177 ESTIVNVQCEKKVRILRPGG 196 STI+++ + +ILR G Sbjct: 185 ASTIIDLTSDVP-KILRKGA 203 >gi|333029883|ref|ZP_08457944.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides coprosuis DSM 18011] gi|332740480|gb|EGJ70962.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides coprosuis DSM 18011] Length = 203 Score = 162 bits (412), Expect = 6e-38, Method: Composition-based stats. Identities = 48/204 (23%), Positives = 82/204 (40%), Gaps = 10/204 (4%) Query: 1 MQIM-SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMN 58 M++ S D +++ + L+ G I PT+T+Y + AI ++ EIK P N Sbjct: 3 MKLYDSNNDPQKIQQVIDILNDGGIIIYPTDTMYAIGCHCMKERAIEQICEIKGIDPRKN 62 Query: 59 PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 L D+S + ++A + + K PGP T +L+ + P N K R Sbjct: 63 NLSLICYDLSTISEYAKMSNTVFKIMKANLPGPFTFILNGTNKL---PKIFRNRKEVGIR 119 Query: 119 VPCG-FTKKLIETYGHPLAIPSANR--SGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 +P + + P+ + + ++ K + L+IDGG Sbjct: 120 MPNNEIIMDITKALEFPIMTTTVPLGENEDTGFLTNPELIYEKFGKIVDLVIDGGTGDYS 179 Query: 176 LESTIVNVQCEKKVRILRPGGLEI 199 STIV+ + V I R G E+ Sbjct: 180 -ASTIVDCTGD-YVEIARQGKGEL 201 >gi|283835700|ref|ZP_06355441.1| hypothetical protein CIT292_10092 [Citrobacter youngae ATCC 29220] gi|291068379|gb|EFE06488.1| Sua5/YciO/YrdC/YwlC family protein [Citrobacter youngae ATCC 29220] Length = 190 Score = 162 bits (412), Expect = 6e-38, Method: Composition-based stats. Identities = 49/183 (26%), Positives = 76/183 (41%), Gaps = 8/183 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + A E L IA PTE V+G+ D + TA+ RL +K+RP LI ++ +K Sbjct: 10 IAAAIEVLKQEKVIAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIAANFDQLK 69 Query: 72 KHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + L+ + WPGP+T V +TT T + RV L Sbjct: 70 PYIDDSTLTDAQRQAVFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVVAL 127 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + YG PL SAN SG V+ + + + P +++G S I + + Sbjct: 128 CQAYGKPLVSTSANLSGLPPCRTVEEV-RAQFGTDFP-VVEGETGGRLNPSEIRDALTGE 185 Query: 188 KVR 190 + R Sbjct: 186 QFR 188 >gi|222825112|dbj|BAH22269.1| Sua5/YciO/YrdC/YwlC family protein [Wolbachia endosymbiont of Cadra cautella] Length = 195 Score = 162 bits (412), Expect = 6e-38, Method: Composition-based stats. Identities = 53/195 (27%), Positives = 91/195 (46%), Gaps = 5/195 (2%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 + + L PTETVY LA ++ +I ++Y IKKR PL VS+I + Sbjct: 4 EVINAIKNNLLACFPTETVYALACNALGKESIEKIYRIKKRSQNKPLSVFVSNIDSLINI 63 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132 A V + L F PGP+T +L L + + + R+P ++ Sbjct: 64 AKVKEEYIDLINYFSPGPMTYILPLQDNSILPNEFF--KDSIGIRIPDHPIAISILNELK 121 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192 P+ S N SG+ SI + + SI + + +I+ G+ESTI+++ +K +++L Sbjct: 122 TPVVATSINISGEKSICKARD-IPQSIKQHLSAVIEDDELVSGIESTIIDLTGDK-IKVL 179 Query: 193 RPGGLEIETLKRAIS 207 R G + ++T+ S Sbjct: 180 RKGKISLQTINNEFS 194 >gi|238752653|ref|ZP_04614124.1| Ribosomal modification protein RimN [Yersinia rohdei ATCC 43380] gi|238709080|gb|EEQ01327.1| Ribosomal modification protein RimN [Yersinia rohdei ATCC 43380] Length = 190 Score = 162 bits (411), Expect = 6e-38, Method: Composition-based stats. Identities = 52/192 (27%), Positives = 80/192 (41%), Gaps = 9/192 (4%) Query: 4 MSITDSNAL-RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 MS T++N + L IA PTE V+GL D + A+ L +K+RP LI Sbjct: 1 MSKTENNVVFSDVLRALQQEQVIAYPTEAVFGLGCDPDSENAVNALLALKQRPWQKGLIL 60 Query: 63 HVSDISMVKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 ++ +K + + LS + WPGP+T V+ T T + + RV Sbjct: 61 IAANYEQLKPYVNDSALSDTQRETLFSCWPGPVTWVIPARPET--PRWLTGHFDSLAVRV 118 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 ++L YG PL SAN SGQ V + +P +++G + S Sbjct: 119 SDHPLVQQLCLQYGKPLVSTSANLSGQEPCRTVAEV-RMQFGPSLP-VLEGQVGGRLNPS 176 Query: 179 TIVNVQCEKKVR 190 I + K+ R Sbjct: 177 EIRDALTGKQFR 188 >gi|296328533|ref|ZP_06871052.1| Sua5/YciO/YrdC/YwlC family protein [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154342|gb|EFG95141.1| Sua5/YciO/YrdC/YwlC family protein [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 217 Score = 162 bits (411), Expect = 6e-38, Method: Composition-based stats. Identities = 65/200 (32%), Positives = 98/200 (49%), Gaps = 10/200 (5%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +I I+D E + G I PT+TVYGL N +I +Y K R +PLI Sbjct: 9 KISDISDDKW-TLLSEEIKKGSLIIYPTDTVYGLGAIVTNEQSINNIYLAKSRSFSSPLI 67 Query: 62 CHVSDISMVKKHASVDP----LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 +S + V++ A V L L+K FWPG LT++L S I + + T Sbjct: 68 ALLSSVDKVEEVAYVSDKNRELLKKLSKAFWPGALTVIL--KSKEHIPSIMVSGGDTIGV 125 Query: 118 RVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P K+I+ G LA SAN SG+ + + LS +I ++ ++ID G K+G Sbjct: 126 RIPNLDLAIKIIDLAGGILATTSANISGEATPKSYDE-LSEAIKSKVDILIDSGKCKLGE 184 Query: 177 ESTIVNVQCEKKVRILRPGG 196 STI+++ + +ILR G Sbjct: 185 ASTIIDLTSDVP-KILRKGA 203 >gi|189461485|ref|ZP_03010270.1| hypothetical protein BACCOP_02144 [Bacteroides coprocola DSM 17136] gi|189431819|gb|EDV00804.1| hypothetical protein BACCOP_02144 [Bacteroides coprocola DSM 17136] Length = 188 Score = 162 bits (411), Expect = 6e-38, Method: Composition-based stats. Identities = 49/190 (25%), Positives = 88/190 (46%), Gaps = 8/190 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++KACE + G I PT+TV+G+ D+ N A++R+YEIK R ++ V Sbjct: 3 KDEIKKACEIMQKGGVILYPTDTVWGIGCDATNEEAVKRVYEIKHRADSKAMLVLVDSPV 62 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 V + V P++ L ++ P T++ D ++ P A + RV F+K+ Sbjct: 63 KVDFYVSDVPPVAWDLIEMTT-KPFTIIYD--GARNLAPNLLAEDGSVGIRVTNETFSKE 119 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQ 184 L + + SAN SGQ + +S I + ++D + G S+I+ + Sbjct: 120 LCFRFRKAIVSTSANISGQPAPAIFSE-ISEEIKNAVDYVVDFRREENGHPKPSSIIKLG 178 Query: 185 CEKKVRILRP 194 V+++R Sbjct: 179 KGGVVKVIRE 188 >gi|227329887|ref|ZP_03833911.1| putative DNA topoisomerase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 189 Score = 162 bits (411), Expect = 6e-38, Method: Composition-based stats. Identities = 53/176 (30%), Positives = 75/176 (42%), Gaps = 8/176 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L IA PTE V+GL D + A+ RL +K+RP LI +D S + + Sbjct: 16 LQNEQVIAYPTEAVFGLGCDPDSEVAVNRLLALKQRPWQKGLILIAADFSQLASYIDDSA 75 Query: 79 LSLH---LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134 LS + WPGP+T VL TT T + RV K+L + YG P Sbjct: 76 LSDEQKAVMFSTWPGPVTWVLPAKHTTPQ--WLTGQFSSLAVRVSDHPLVKELCQRYGKP 133 Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 L SAN SGQ + + S + P ++ G + S I +V + +R Sbjct: 134 LVSTSANLSGQPPCRTAQEV-SQQFGDDFP-VLVGDVGGRMNPSEIRDVLTGELIR 187 >gi|126330406|ref|XP_001380961.1| PREDICTED: similar to Ischemia/reperfusion inducible protein [Monodelphis domestica] Length = 394 Score = 162 bits (411), Expect = 6e-38, Method: Composition-based stats. Identities = 60/195 (30%), Positives = 97/195 (49%), Gaps = 12/195 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S AL A L AG +A+PT+T+YG+A + A+ +Y +K R PL + ++ Sbjct: 182 SEALTAAVTALRAGGLVAVPTDTLYGVACSACCSAALGAVYSLKGRSQTKPLAVCLGGVA 241 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + K+ V + L + PGP+TLV++ + +++ R+P F + L Sbjct: 242 DIYKYCQVR-VPRELLEDLLPGPVTLVMER--SRELNKDLNPFTPLVGIRIPDHAFMRDL 298 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI------SKIGLESTIV 181 + + PLA+ SAN S Q S NVK + ++ L+IDGG + L ST+V Sbjct: 299 AQAFSGPLALTSANISSQPSSLNVKE--FQDLWPQLSLVIDGGPIGDVKSPECRLGSTVV 356 Query: 182 NVQCEKKVRILRPGG 196 ++ K RI+RPG Sbjct: 357 DLSVPGKYRIIRPGC 371 >gi|91776228|ref|YP_545984.1| Sua5/YciO/YrdC/YwlC [Methylobacillus flagellatus KT] gi|91710215|gb|ABE50143.1| Sua5/YciO/YrdC/YwlC [Methylobacillus flagellatus KT] Length = 209 Score = 162 bits (411), Expect = 6e-38, Method: Composition-based stats. Identities = 41/189 (21%), Positives = 70/189 (37%), Gaps = 4/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A L G IA PT++ Y L N A R+ I+ + +++ Sbjct: 14 PRLINQAVAILRDGGVIAYPTDSSYALGCMLGNKEAQDRIRAIRGVDDSHHFTLICRNLA 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD L K PG T +L L T RVP T L Sbjct: 74 ELSTYAQVDNSQFRLLKANTPGQYTFILKATREVP-RRLQHPKRSTVGLRVPQHAVTLAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E P+ + G + N + + ++ L+ID G +T++++ E Sbjct: 133 LEELNEPMLSMTLQLPGDDAPLNEAWEIRDQLEHQVDLVIDAGACAF-KPTTVIDLTGES 191 Query: 188 KVRILRPGG 196 ++R G Sbjct: 192 P-SLVRLGA 199 >gi|160891097|ref|ZP_02072100.1| hypothetical protein BACUNI_03544 [Bacteroides uniformis ATCC 8492] gi|156859318|gb|EDO52749.1| hypothetical protein BACUNI_03544 [Bacteroides uniformis ATCC 8492] Length = 204 Score = 162 bits (411), Expect = 6e-38, Method: Composition-based stats. Identities = 48/196 (24%), Positives = 79/196 (40%), Gaps = 11/196 (5%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICH 63 + L++ + L+ G + PT+T+Y + AI R+ +K P N L Sbjct: 8 KNNNPADLQQVVDLLNDGGILIYPTDTMYAIGCHGLKERAIERICRLKNIDPKKNNLSII 67 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 D+S V ++A VD + L K PG T +L+ T P N K R+P Sbjct: 68 CYDLSKVSEYAKVDNSTFKLMKRNLPGAFTFILN---GTTRLPKIFRNRKEVGIRMPDNS 124 Query: 123 FTKKLIETYGHPLAIPSANRSG--QISITNVKHILSSSICKEIPLIIDGGISKIGLE-ST 179 +++ P+ + I ++ + L+IDGGI G E ST Sbjct: 125 IIQEIARLLDAPIMTTTLPHDDNEDIEYCTDPELIDEKFGDIVDLVIDGGIG--GTEGST 182 Query: 180 IVNVQCEKKVRILRPG 195 +V+ + I+R G Sbjct: 183 VVDCTNGEP-EIIRQG 197 >gi|312863566|ref|ZP_07723804.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus vestibularis F0396] gi|322517015|ref|ZP_08069904.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus vestibularis ATCC 49124] gi|311101102|gb|EFQ59307.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus vestibularis F0396] gi|322124432|gb|EFX95929.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus vestibularis ATCC 49124] Length = 201 Score = 162 bits (411), Expect = 6e-38, Method: Composition-based stats. Identities = 60/196 (30%), Positives = 101/196 (51%), Gaps = 8/196 (4%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 ++ E LD G I +PTETVYGL + + +A+ +YE+K RP + +V+ + Sbjct: 6 KQLRESLDNGEAIVLPTETVYGLFAKAMDESAVNHVYELKNRPIDKAMNLNVASYEDILS 65 Query: 73 HASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 ++ P L L F PGPLT++L + + + L T FR+P T++LI+ Sbjct: 66 YSKEQPKYLKQLYDAFLPGPLTIIL--KANDQVPRWINSGLATVGFRLPNHPVTRELIQA 123 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G PL PSAN+SG+ S + + + ++ D + +G++STI+++ R Sbjct: 124 EG-PLIGPSANKSGKESGRHFDD-IRAQFDFQVTGYRDDN-ALLGVDSTILDLSVS-PAR 179 Query: 191 ILRPGGLEIETLKRAI 206 ILR G + + L A+ Sbjct: 180 ILRQGKITKDDLLAAL 195 >gi|296135809|ref|YP_003643051.1| Sua5/YciO/YrdC/YwlC family protein [Thiomonas intermedia K12] gi|294339974|emb|CAZ88337.1| putative RNA-binding protein, yciO [Thiomonas sp. 3As] gi|295795931|gb|ADG30721.1| Sua5/YciO/YrdC/YwlC family protein [Thiomonas intermedia K12] Length = 211 Score = 162 bits (411), Expect = 6e-38, Method: Composition-based stats. Identities = 46/192 (23%), Positives = 84/192 (43%), Gaps = 4/192 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A L +G AIPT++ Y L + A++RL +I++ + L SD+S + Sbjct: 17 IKQAAAVLHSGGVAAIPTDSSYALVCHLDDKAAVQRLRQIRQVDERHHLTLLCSDLSELG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130 +A VD L + PGP T +L+ +S + KT RVP L+ Sbjct: 77 NYARVDNRQYRLIRACTPGPYTFILEATKEVP-RRVSHPSRKTIGVRVPQNAVAHTLLVE 135 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 PL + G N + + ++ L++D G +T+V++ + V Sbjct: 136 MAQPLLATTLILPGDEHALNDAADIRDQLEHQVDLVLDAGPCPS-EPTTVVDLCGAEPV- 193 Query: 191 ILRPGGLEIETL 202 ++R G ++ L Sbjct: 194 VIRIGRGPLDAL 205 >gi|325104975|ref|YP_004274629.1| translation factor SUA5 [Pedobacter saltans DSM 12145] gi|324973823|gb|ADY52807.1| translation factor SUA5 [Pedobacter saltans DSM 12145] Length = 188 Score = 162 bits (411), Expect = 7e-38, Method: Composition-based stats. Identities = 46/188 (24%), Positives = 85/188 (45%), Gaps = 6/188 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + KA E L G I PT+T++G+ D+ NP A+ ++Y +K+R LI + + Sbjct: 3 KDEINKALEVLKNGGLILYPTDTIWGIGCDATNPEAVAKVYALKQRTESKSLIILLDTDN 62 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A+ P + + P+T++ ++ P + RV F K+L Sbjct: 63 KLVSYANDIPDVAYDLIEYAENPMTIIFSNAK--NLAPNVINEDGSVGIRVTSHQFCKEL 120 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLI--IDGGISKIGLESTIVNVQC 185 I+ + P+ SAN SG S N + + I + I ++ S STI+ ++ Sbjct: 121 IQRFRKPIVSTSANVSGNPSPKNFSY-IDQEIKDGVDYIVNLEQEDSIEKKPSTIIKLEP 179 Query: 186 EKKVRILR 193 + K +R Sbjct: 180 DGKFAFIR 187 >gi|51244753|ref|YP_064637.1| hypothetical protein DP0901 [Desulfotalea psychrophila LSv54] gi|50875790|emb|CAG35630.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54] Length = 203 Score = 162 bits (411), Expect = 7e-38, Method: Composition-based stats. Identities = 50/185 (27%), Positives = 82/185 (44%), Gaps = 5/185 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++ + L G I PT+T YG+ D N A++ L ++KKRP P S ++ + Sbjct: 15 IKQVVQKLQQGAIICYPTDTGYGIGCDLLNQRAVKALMQLKKRPKNKPFSFMCSGLTHIS 74 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIET 130 ++A V + L K PGP T VL + + + KT RVP + LI Sbjct: 75 EYAHVSNTAYRLLKKNLPGPYTFVLP--GSKLVPKVMATKQKTVGIRVPDNPISQALITA 132 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G+P+ S + +I I +IID G S S+++++ ++ Sbjct: 133 LGNPIVNTSVQLGEDDEPLADPFEIDLAIGNRIDIIID-GGSIYPDPSSVIDLTTDQP-E 190 Query: 191 ILRPG 195 ILR G Sbjct: 191 ILRVG 195 >gi|288800032|ref|ZP_06405491.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella sp. oral taxon 299 str. F0039] gi|288333280|gb|EFC71759.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella sp. oral taxon 299 str. F0039] Length = 189 Score = 162 bits (411), Expect = 7e-38, Method: Composition-based stats. Identities = 54/191 (28%), Positives = 92/191 (48%), Gaps = 6/191 (3%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 +T S ++ A E L G I PT+TV+G+ D+ N +A+ R+YE+KKR +IC V Sbjct: 1 MTQSEDIKNAVEVLKRGGLILYPTDTVWGIGCDATNESAVARVYELKKRADSKAMICLVD 60 Query: 66 DISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123 S V+++ V ++ L + P T++LD ++ P A + R+ F Sbjct: 61 SDSRVQRYVKNVPNVAWDLME-LADKPTTIILD--DAVNLAPNLIAEDGSIAIRITREAF 117 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS-KIGLESTIVN 182 +K+L + PL SAN SG+ + +N + I+ I + K S+I+ Sbjct: 118 SKELCYRFQKPLVSTSANISGEPTASNYRDIVQEIIDGVDYVCWTRRQEHKPHAPSSIIK 177 Query: 183 VQCEKKVRILR 193 + +V I+R Sbjct: 178 LTKTGEVTIIR 188 >gi|320449794|ref|YP_004201890.1| Sua5/YciO/YrdC/YwlC family protein [Thermus scotoductus SA-01] gi|320149964|gb|ADW21342.1| Sua5/YciO/YrdC/YwlC family protein [Thermus scotoductus SA-01] Length = 197 Score = 162 bits (411), Expect = 7e-38, Method: Composition-based stats. Identities = 55/198 (27%), Positives = 89/198 (44%), Gaps = 17/198 (8%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 L++A E L G +A PT+TV+G+ + A RR+Y +K R PL V+D+ Sbjct: 6 QKELQEAAETLRRGGLVAFPTDTVWGILARLEDEAACRRIYALKGRGEEKPLQVLVTDLE 65 Query: 69 MVKKHAS---VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 K + L LA+ FWPG LT+V+ +I P + + R+P Sbjct: 66 SALKLVDLGKLRDKFLRLAEAFWPGGLTVVVP---GQNIPPWIS-RDGSVGLRMPDHALL 121 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 ++L+ G A S NRSG+ + K + + G +GL S++V+++ Sbjct: 122 RELLRRVGGYAAATSLNRSGEPPVRTEKEA--REFG--VDYVFPGE--ALGLASSVVDLR 175 Query: 185 CEKKVRILRPGGLEIETL 202 +LR G + E L Sbjct: 176 TG---EVLREGAIPKEAL 190 >gi|85000901|ref|XP_955169.1| hypothetical protein [Theileria annulata strain Ankara] gi|65303315|emb|CAI75693.1| hypothetical protein, conserved [Theileria annulata] Length = 703 Score = 162 bits (411), Expect = 7e-38, Method: Composition-based stats. Identities = 66/188 (35%), Positives = 96/188 (51%), Gaps = 11/188 (5%) Query: 8 DSNALRKACE--FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 D N + + + ++ G IAIPTETVYGLA + ++ R++ IK RP +PLI HV Sbjct: 72 DENEIFEIIKTILMEPGGLIAIPTETVYGLAGNIHLENSLLRIFSIKDRPFNDPLIVHVH 131 Query: 66 D-ISMVKKHASVDPLSLHLA----KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 + ++ V+ + L + F PGPLT+V I PL T R P Sbjct: 132 SFLYALRHLYDVNDVEAFLILFLAEKFAPGPLTIV--ARKAQSISPLLTNQTDFIAVRCP 189 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 T KL+E PLA PSAN+ G IS T +H+ + +++ I+D G IG+EST Sbjct: 190 NNKVTLKLLEFIQVPLAAPSANKFGHISPTCPEHVKNEFPNEDL-YILDDGNCTIGIEST 248 Query: 180 IVNVQCEK 187 I+ + K Sbjct: 249 IIKLTSNK 256 >gi|86142259|ref|ZP_01060769.1| Sua5/YciO/YrdC/YwlC family protein [Leeuwenhoekiella blandensis MED217] gi|85831011|gb|EAQ49468.1| Sua5/YciO/YrdC/YwlC family protein [Leeuwenhoekiella blandensis MED217] Length = 195 Score = 162 bits (411), Expect = 7e-38, Method: Composition-based stats. Identities = 50/190 (26%), Positives = 82/190 (43%), Gaps = 6/190 (3%) Query: 8 DSNALRKACE---FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 D N + + E + G + PT+TV+G+ D+ N AI ++Y +KKR LIC V Sbjct: 7 DQNIINEVNESLGVIKRGGLLLYPTDTVWGIGCDATNADAIDKVYALKKRKESKALICLV 66 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGF 123 SD+ M+ + P + + P T++ D + T R V F Sbjct: 67 SDMKMLNQFIEEIPEVAYNILKYADQPTTIIYD--KPIRVAENLVGEDNTLGIRIVQDEF 124 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + LI+ G PL SAN SG+ + I + ++ K STI+ + Sbjct: 125 CRSLIKKMGRPLVSTSANISGEKTPMRFPEISKPILEGVDYIVNLQRKHKSTKSSTIIRL 184 Query: 184 QCEKKVRILR 193 + +V++LR Sbjct: 185 SNDGQVKVLR 194 >gi|317481004|ref|ZP_07940084.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 4_1_36] gi|316902897|gb|EFV24771.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 4_1_36] Length = 204 Score = 162 bits (411), Expect = 7e-38, Method: Composition-based stats. Identities = 48/196 (24%), Positives = 79/196 (40%), Gaps = 11/196 (5%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICH 63 + L++ + L+ G + PT+T+Y + AI R+ +K P N L Sbjct: 8 KNNNPADLQQVVDLLNDGGILIYPTDTMYAIGCHGLKERAIERICRLKNIDPKKNNLSII 67 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 D+S V ++A VD + L K PG T +L+ T P N K R+P Sbjct: 68 CYDLSKVSEYAKVDNATFKLMKRNLPGAFTFILN---GTTRLPKIFRNRKEVGIRMPDNS 124 Query: 123 FTKKLIETYGHPLAIPSANRSG--QISITNVKHILSSSICKEIPLIIDGGISKIGLE-ST 179 +++ P+ + I ++ + L+IDGGI G E ST Sbjct: 125 IIQEIARLLDAPIMTTTLPHEDNEDIEYCTDPELIDEKFGDIVDLVIDGGIG--GTEGST 182 Query: 180 IVNVQCEKKVRILRPG 195 +V+ + I+R G Sbjct: 183 VVDCTNGEP-EIIRQG 197 >gi|237743716|ref|ZP_04574197.1| SUA5 protein [Fusobacterium sp. 7_1] gi|256028220|ref|ZP_05442054.1| SUA5 protein [Fusobacterium sp. D11] gi|289766152|ref|ZP_06525530.1| SUA5 protein [Fusobacterium sp. D11] gi|229432747|gb|EEO42959.1| SUA5 protein [Fusobacterium sp. 7_1] gi|289717707|gb|EFD81719.1| SUA5 protein [Fusobacterium sp. D11] Length = 217 Score = 162 bits (411), Expect = 7e-38, Method: Composition-based stats. Identities = 61/183 (33%), Positives = 91/183 (49%), Gaps = 9/183 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 + G I PT+TVYGL N +I +Y K R +PLI +S + V++ A V Sbjct: 25 IKKGSLIIYPTDTVYGLGAVITNEQSINNVYLAKSRSFSSPLIALLSSVDKVEEVAYVSD 84 Query: 79 ----LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGH 133 L LAK FWPG LT++L I + + T R+P K+I+ G Sbjct: 85 KNKNLLKKLAKAFWPGALTVILKRKEH--IPSIMVSGGDTIGVRIPNLDLAIKIIDLAGG 142 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 LA SAN SG+ + + LS +I ++ ++ID G K+G STI+++ + +ILR Sbjct: 143 ILATTSANISGEATPKSYDE-LSETIKSKVDILIDSGKCKLGEASTIIDLTSDVP-KILR 200 Query: 194 PGG 196 G Sbjct: 201 KGA 203 >gi|73666905|ref|YP_302921.1| translation factor SUA5 [Ehrlichia canis str. Jake] gi|72394046|gb|AAZ68323.1| translation factor SUA5 [Ehrlichia canis str. Jake] Length = 198 Score = 162 bits (411), Expect = 7e-38, Method: Composition-based stats. Identities = 58/196 (29%), Positives = 100/196 (51%), Gaps = 7/196 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + KA + L+ IA PTETVY LA D+ + AI+++Y+IK R PL V +I+ +K Sbjct: 2 ILKAIQALNNKHLIAFPTETVYALAGDAYSIEAIQKIYQIKGRSYNKPLSLLVGNINKIK 61 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 + +++ ++ + + PGP+T VL + + + N T R+P +++ Sbjct: 62 QFSNLTDHAIKIIQKLSPGPITFVLPIHNYHKLPRQFFNN--TIGIRIPNHPIALEIVNK 119 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 +P+ S N SGQ S+T H + +I K I + I+ G EST++++ + Sbjct: 120 IENPVVGTSINISGQPSVT-AAHQIHETIKKHISVTIEDDSLVNGTESTVIDLTS---YK 175 Query: 191 ILRPGGLEIETLKRAI 206 ILR G + + L I Sbjct: 176 ILRAGAVAEKKLLTII 191 >gi|260599602|ref|YP_003212173.1| tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein [Cronobacter turicensis z3032] gi|260218779|emb|CBA34127.1| Putative ribosome maturation factor rimN [Cronobacter turicensis z3032] Length = 190 Score = 162 bits (411), Expect = 7e-38, Method: Composition-based stats. Identities = 48/187 (25%), Positives = 74/187 (39%), Gaps = 8/187 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 ++A+ + L IA PTE V+G+ D + TA++RL E+K+RP LI ++ Sbjct: 6 PADAISSIVDVLKKEHVIAYPTEAVFGVGCDPDSETAVKRLLELKQRPMEKGLILIAANF 65 Query: 68 SMVKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF- 123 +K + P WPGP+T V ++T T + RV Sbjct: 66 EQLKPYIDDAALTPEQREAVFACWPGPVTFVFPAKAST--PRWLTGRFDSLAVRVTNHPQ 123 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 L E +G PL SAN SG + +L + P ++ G S I + Sbjct: 124 VIALCEAFGKPLVSTSANLSGLEPCRTAQEVL-AQFGDAFP-VLHGATGGRQNPSEIRDA 181 Query: 184 QCEKKVR 190 R Sbjct: 182 LTGALFR 188 >gi|78357332|ref|YP_388781.1| translation factor SUA5 [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219737|gb|ABB39086.1| translation factor SUA5 [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 210 Score = 162 bits (411), Expect = 7e-38, Method: Composition-based stats. Identities = 57/206 (27%), Positives = 94/206 (45%), Gaps = 7/206 (3%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 Q + +TD + +A L G + PTET + + + + A+ +Y IK+RP+ PL Sbjct: 4 QTIPVTD---VNEAAVLLQEGKVVVYPTETFFAVGCLATDVRAVDAVYRIKRRPSGMPLP 60 Query: 62 CHVSDISMVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV- 119 + + +V PL LA+LFWPGPL++++ ++ I + T RV Sbjct: 61 VIIGSAGQLGLVTAVSSPLVTRLAELFWPGPLSVLVT--ASDRIPAILTGETGRVAVRVT 118 Query: 120 PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 P L G L SAN SG+ ++T + + + ++ G ST Sbjct: 119 PHPAAAALCTACGGALVSTSANISGRQAVTAASGLDPELVGQVAAVVDMPPAPAGGKPST 178 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRA 205 +V V VRI+RPG + + L+ A Sbjct: 179 LVEVAGPAHVRIVRPGAVTEDALQTA 204 >gi|226941023|ref|YP_002796097.1| SUA5/YciO/YrdC/YwlC family protein [Laribacter hongkongensis HLHK9] gi|226715950|gb|ACO75088.1| SUA5/YciO/YrdC/YwlC family protein [Laribacter hongkongensis HLHK9] Length = 210 Score = 162 bits (411), Expect = 7e-38, Method: Composition-based stats. Identities = 43/199 (21%), Positives = 80/199 (40%), Gaps = 8/199 (4%) Query: 2 QIMSITDS----NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 Q SI +R+A + + G I PT++ Y L + A+ R+ I++ Sbjct: 3 QFFSIHPETPQARLIREAVKIVREGGVIVYPTDSCYALGCRLSDKKAMDRIITIRQLDLR 62 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 + ++S + +A VD L K PG T +L L +T Sbjct: 63 HHFTLVCHNLSELGTYARVDNTVYRLLKSVTPGAYTFILQATKEVPRRTL-HPKRQTIGL 121 Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 RVP L+E G P+ + G+ + + + +I ++ L+IDGG + Sbjct: 122 RVPDNAIALALLEELGEPMLSCTLMLPGENEPPSDPYDIRDTIGPQVDLVIDGGYCGVD- 180 Query: 177 ESTIVNVQCEKKVRILRPG 195 +T++++ ++R G Sbjct: 181 PTTVIDLTSGAP-ELVRKG 198 >gi|253690146|ref|YP_003019336.1| SUA5/yciO/yrdC domain protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756724|gb|ACT14800.1| SUA5/yciO/yrdC domain protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 189 Score = 162 bits (410), Expect = 8e-38, Method: Composition-based stats. Identities = 51/176 (28%), Positives = 73/176 (41%), Gaps = 8/176 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV-- 76 L IA PTE V+GL D + A+ RL +K+RP LI +D S + + Sbjct: 16 LHNEQVIAYPTEAVFGLGCDPDSEVAVNRLLALKQRPWQKGLILIAADFSQLAPYIDDSV 75 Query: 77 -DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134 + WPGP+T VL TT T + RV K+L + YG P Sbjct: 76 LSDEQKAMMFSTWPGPVTWVLPAKRTTPQ--WLTGQFSSLAVRVSDHPLVKELCQRYGKP 133 Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 L SAN SGQ + + S + P ++ G + S I +V + +R Sbjct: 134 LVSTSANLSGQPPCRTAQEV-SQQFGDDFP-VLAGDVGGRMNPSEIRDVLTGELIR 187 >gi|332521229|ref|ZP_08397687.1| Sua5/YciO/YrdC/YwlC family protein [Lacinutrix algicola 5H-3-7-4] gi|332043322|gb|EGI79519.1| Sua5/YciO/YrdC/YwlC family protein [Lacinutrix algicola 5H-3-7-4] Length = 188 Score = 162 bits (410), Expect = 8e-38, Method: Composition-based stats. Identities = 50/183 (27%), Positives = 86/183 (46%), Gaps = 5/183 (2%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 +A L G I PT+TV+G+ D+ N A++++Y++K R LIC V++ SM++KH Sbjct: 9 EAVTVLKQGGIILYPTDTVWGIGCDATNYNAVKKVYKLKNREESKALICLVNNYSMLEKH 68 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYG 132 P + P T++ D + + A T RV F + LI+ G Sbjct: 69 VDNVPNIAYDILDLAINPTTVIYDNPAG--VAENLIAEDNTLAIRVTQDKFCQHLIKYLG 126 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL-ESTIVNVQCEKKVRI 191 P+ SAN +G + + K + +I K + +++ K STI+ + V+I Sbjct: 127 KPIVSTSANLAGNPTPKSFKE-IDEAILKGVDYVVNLQTEKRSTNPSTIIKLSNNGNVKI 185 Query: 192 LRP 194 +R Sbjct: 186 IRE 188 >gi|270015172|gb|EFA11620.1| hypothetical protein TcasGA2_TC030645 [Tribolium castaneum] Length = 203 Score = 162 bits (410), Expect = 8e-38, Method: Composition-based stats. Identities = 59/186 (31%), Positives = 88/186 (47%), Gaps = 10/186 (5%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A + L +G IA+PT+TVYGLA D+ N T+I +LY IK R P+ + D+ VK A Sbjct: 3 AVDLLKSGRVIALPTDTVYGLACDATNITSINKLYSIKGRNEAKPVAICLGDVPQVKAWA 62 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGH 133 + L L + PGP+T++L ST D A R+P F + L G Sbjct: 63 KIGHLPQGLLESLLPGPVTVILTSASTLDKSLSFNAK---VGIRIPDYHFIRALARGLGR 119 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG----ISKIGLESTIVNVQCEKKV 189 PLA+ SAN S + S + + ++ + DGG ST++++ Sbjct: 120 PLALTSANLSNEPSSLTINE--FQDLWAQVGAVFDGGNLGLDDSRRRASTVIDLSECGLF 177 Query: 190 RILRPG 195 I+R G Sbjct: 178 TIVRHG 183 >gi|86609790|ref|YP_478552.1| Sua5/YciO/YrdC/YwlC family protein [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558332|gb|ABD03289.1| Sua5/YciO/YrdC/YwlC family protein [Synechococcus sp. JA-2-3B'a(2-13)] Length = 237 Score = 162 bits (410), Expect = 8e-38, Method: Composition-based stats. Identities = 46/212 (21%), Positives = 86/212 (40%), Gaps = 24/212 (11%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++R+ L G + PT+TVY + D+ + A+ R+ IK+ PL +S Sbjct: 14 ARSIRRIAAALREGAVMLYPTDTVYAIGCDATHKQAVERVRRIKQLSNDKPLTFLCPSLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLST-ANLKTACFRVPC-GFTKK 126 + +A V + L + PGP T +L +T + L KT RVP + Sbjct: 74 RIAHYAQVTDSAYRLMRRLIPGPFTFLLP--ATKLVPKLVMEPKRKTTGIRVPDSAICQA 131 Query: 127 LIETYGHPLAIPSANRSGQI----------------SITNVKHILSS----SICKEIPLI 166 L+E G+P+ SA G + I ++ + K++ L+ Sbjct: 132 LLEELGNPIVSTSAKLGGDPVGSLDLSSGQAWEWESDPWDEGGIFAAEEMRQLEKQVDLV 191 Query: 167 IDGGISKIGLESTIVNVQCEKKVRILRPGGLE 198 +D + ST++++ + + + G E Sbjct: 192 LDDDAPRRAKVSTVIDLTGSEPLVVRAGLGYE 223 >gi|254796933|ref|YP_003081770.1| Sua5/YciO/YrdC/YwlC family protein [Neorickettsia risticii str. Illinois] gi|254590181|gb|ACT69543.1| Sua5/YciO/YrdC/YwlC family protein [Neorickettsia risticii str. Illinois] Length = 195 Score = 162 bits (410), Expect = 8e-38, Method: Composition-based stats. Identities = 50/188 (26%), Positives = 86/188 (45%), Gaps = 6/188 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + L G + PTETVY LA D+ N A+ R+Y+IK+R L V+ IS ++ Sbjct: 2 IFETVSLLRVGGVVIFPTETVYALACDASNYRAMLRIYDIKQRNIKKNLPVMVAGISQLE 61 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 AS + L K PGP+T +L + + RVP K++ Sbjct: 62 SFASFNESQARLIKECCPGPVTFILKRKKSAHLRFRFPEK---VAVRVPDSKVALKILRG 118 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 + P+ S N SG+ ++++ + S + K + II G S+I+++ ++ V Sbjct: 119 FNRPVFATSVNLSGRPAVSSFTQ-IGSYMKKRVSRIICDNRGVKGTASSIIDISGKRAV- 176 Query: 191 ILRPGGLE 198 ++R G Sbjct: 177 LVRKGAFS 184 >gi|305667010|ref|YP_003863297.1| putative Sua5/yciO/yrdC family protein [Maribacter sp. HTCC2170] gi|88709245|gb|EAR01479.1| putative Sua5/yciO/yrdC family protein [Maribacter sp. HTCC2170] Length = 206 Score = 162 bits (410), Expect = 8e-38, Method: Composition-based stats. Identities = 47/197 (23%), Positives = 85/197 (43%), Gaps = 9/197 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL-ICHVSD 66 + A+ + + L G I PT+TVY L D N A+ +L IK +D Sbjct: 13 NPKAISRVVQSLRKGGLIIYPTDTVYSLGCDITNTRALEKLARIKGIKLEKANWSFVCAD 72 Query: 67 ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125 +S + + +D + K PGP T +L ++ P KT RVP Sbjct: 73 LSNLSDYVRQIDTSVFKILKRALPGPYTFILP---GSNSLPKVFKKKKTIGIRVPNNSIP 129 Query: 126 K-LIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 K L++ G+P+ S + ++ T ++ + ++IDGG + ST++++ Sbjct: 130 KTLVQELGNPIVSTSIHDEDEVLEYTTDPELIHEKWGNIVDVVIDGGYGG-NIASTVIDL 188 Query: 184 QCEKKVRILRPGGLEIE 200 ++ V ++R G I+ Sbjct: 189 SQDE-VEVVREGKGAID 204 >gi|320532875|ref|ZP_08033646.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320134905|gb|EFW27082.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 256 Score = 162 bits (410), Expect = 8e-38, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 103/233 (44%), Gaps = 26/233 (11%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + L+ ACE L AG + +PT+TVYG+ ++ + A+ RL K R P V+D + Sbjct: 19 PDPLQPACEHLRAGGLVILPTDTVYGIGCNAADAGAVERLLAAKGRGRQMPPPVLVADPA 78 Query: 69 MVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + + P + H L + FWPG LTLVLD T T T R+P Sbjct: 79 DLTGIVAQVPEAAHTLMEAFWPGALTLVLDADETLTWDLGETGG--TLAVRMPAHGLALN 136 Query: 127 LIETYGHPLAIPSANRSGQI-----------SITNVKHILS--------SSICKEIPLII 167 L+ G PLA+ SAN +G V+ I ++ +E L++ Sbjct: 137 LLRRSG-PLAVTSANPTGAPPATDAASARAAFPGRVRDIEELTPGTGDVGAVGREDILLL 195 Query: 168 DGGISKIGLESTIVNVQC--EKKVRILRPGGLEIETLKRAISVELEYCVDETS 218 DGG + + STIV + + RILR G L L+R + V L E + Sbjct: 196 DGGATPGPVPSTIVTLAGAHARAPRILRQGVLARGDLERVVGVALSERTAEAA 248 >gi|121635430|ref|YP_975675.1| hypothetical protein NMC1726 [Neisseria meningitidis FAM18] gi|120867136|emb|CAM10903.1| conserved hypothetical protein [Neisseria meningitidis FAM18] Length = 254 Score = 162 bits (410), Expect = 8e-38, Method: Composition-based stats. Identities = 40/189 (21%), Positives = 76/189 (40%), Gaps = 5/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E ++ G + PT++ Y L + A+ R+ I+K + L +D+S Sbjct: 62 ERLIKQAVEIVNQGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLS 121 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A +D + K PGP T +L L KT R+P + L Sbjct: 122 ELGTYAKIDNVQFRQLKAATPGPYTFILQATKEVPARTL-HPKRKTIGLRIPDNAIAQAL 180 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + + + + + L+IDGG +T+V++ Sbjct: 181 LGELGEPLLSCTLMLPEDGEPLTDPYEIRERLEHAVDLVIDGGWCGT-EPTTVVDMTDGT 239 Query: 188 KVRILRPGG 196 ++ +R G Sbjct: 240 EL--VRRGC 246 >gi|296876520|ref|ZP_06900571.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus parasanguinis ATCC 15912] gi|296432513|gb|EFH18309.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus parasanguinis ATCC 15912] Length = 203 Score = 162 bits (410), Expect = 8e-38, Method: Composition-based stats. Identities = 69/205 (33%), Positives = 104/205 (50%), Gaps = 11/205 (5%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L+AG + +PTETVYG+ + + A+ +YE+K+RP L +V+D ++ ++ P Sbjct: 8 LEAGRAVILPTETVYGIFAKALDQEAVDYIYELKRRPRDKALNLNVADEKTIRIYSKNQP 67 Query: 79 LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLA 136 L L F PGPLT++L + + + L T FR+P T +LI YG PL Sbjct: 68 SYLTKLIHSFLPGPLTIILQ--ANDKVPDWIHSGLDTVGFRIPAHPKTLELIRKYG-PLV 124 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SG S T + I+S + +P I D G +STI+++ K RILR G Sbjct: 125 GPSANLSGHASGTKYEAIVSE-FDQVVPGIEDDDF-LTGQDSTILDISGSK-ARILRQGS 181 Query: 197 LEIETLKRAISVELEYCVDETSTPQ 221 + L ++ E +E PQ Sbjct: 182 ITKTDL---LAQVPELSFEEDELPQ 203 >gi|170078316|ref|YP_001734954.1| Sua5/YciO/YrdC/YwlC family protein [Synechococcus sp. PCC 7002] gi|169885985|gb|ACA99698.1| Sua5/YciO/YrdC/YwlC family protein [Synechococcus sp. PCC 7002] Length = 223 Score = 162 bits (410), Expect = 8e-38, Method: Composition-based stats. Identities = 48/206 (23%), Positives = 92/206 (44%), Gaps = 10/206 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 L + L AG + PT+TVY + D A++++ ++K+ PL S +S Sbjct: 14 QRDLEAIAQQLRAGAVMLYPTDTVYAIGCDLTAKQAVQKVRQLKRLANDKPLTFLCSSLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKK 126 + ++A V + + K PGP T +L +T + L + ++ RVP + Sbjct: 74 NISEYALVSDEAYRIMKRAIPGPYTFLLP--ATKQVPKLVMSPKRRSTGIRVPDHAICQG 131 Query: 127 LIETYGHPLAIPSANRSGQI-SITN---VKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 L++ G+P+ SA+ + K L ++ + +IID STI++ Sbjct: 132 LLQALGNPIISTSAHLPDEDGEPFTLGLEKARLFDALEPLVDIIIDSDSEPGTKTSTILD 191 Query: 183 VQCEKKVRILRPGGLEIETLKRAISV 208 C+++ ++R G L + L+ + V Sbjct: 192 F-CDRQPTLIRKG-LGWDALEGWLDV 215 >gi|87119434|ref|ZP_01075331.1| putative translation factor [Marinomonas sp. MED121] gi|86164910|gb|EAQ66178.1| putative translation factor [Marinomonas sp. MED121] Length = 206 Score = 162 bits (410), Expect = 8e-38, Method: Composition-based stats. Identities = 44/205 (21%), Positives = 82/205 (40%), Gaps = 8/205 (3%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 Q I N +R+A + + G I PT+ Y L + +A+ R+ +I++ Sbjct: 3 QFFQIHPENPQARLIRQATDIIRNGGVIVYPTDCGYSLGCHIGDKSALDRIRQIRRLDDK 62 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 + D+S + +A D L K PGP T + S L KT Sbjct: 63 HNFTLVCKDLSEISTYARFDNRLYRLLKHHTPGPYTFIFGATSEVP-RRLLHPKRKTIGI 121 Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P + L++ G P+ S + + + ++ ++ L+IDGG + Sbjct: 122 RIPENKIVQALLDELGEPIMSSSLILPNETLPMMDPYDIRDTLQHQLDLVIDGGYCGM-E 180 Query: 177 ESTIVNVQCEKKVRILRPGGLEIET 201 +T++ + + + ILR G + Sbjct: 181 PTTVIKMDLDD-MAILRQGAGDASA 204 >gi|254423359|ref|ZP_05037077.1| Sua5/YciO/YrdC/YwlC family protein [Synechococcus sp. PCC 7335] gi|196190848|gb|EDX85812.1| Sua5/YciO/YrdC/YwlC family protein [Synechococcus sp. PCC 7335] Length = 219 Score = 162 bits (410), Expect = 9e-38, Method: Composition-based stats. Identities = 54/211 (25%), Positives = 91/211 (43%), Gaps = 11/211 (5%) Query: 2 QIMSIT-DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 ++ +T D + + L G + PT+TVY + D + +AI+R+ ++K+ PL Sbjct: 6 EVHPVTPDPRTINALRDDLRQGAIMLYPTDTVYAIGCDLSSKSAIKRVRQLKQLSNDKPL 65 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRV 119 + +S V +A V + + K PGP T +L +T + L +T RV Sbjct: 66 TFLCASLSNVASYAHVTDPAYKIMKRLIPGPYTFLLP--ATKAVPKLVINPKRRTTGIRV 123 Query: 120 PC-GFTKKLIETYGHPLAIPSA-----NRSGQISITNVKHILSSSICKEIPLIIDGGISK 173 P LIE G+P+ SA + T K +L I K + +++D Sbjct: 124 PNSPLCLSLIEALGNPIISTSAASIVSRSTEDDIDTLSKVMLFDQIEKLVDVVVDSNTEL 183 Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIETLKR 204 STIV+V + I R G + E ++ Sbjct: 184 GHQVSTIVDVTDGSPLVIRRGQGWQ-EAIEW 213 >gi|327395467|dbj|BAK12889.1| protein yrdC YrdC [Pantoea ananatis AJ13355] Length = 190 Score = 162 bits (410), Expect = 9e-38, Method: Composition-based stats. Identities = 49/186 (26%), Positives = 72/186 (38%), Gaps = 8/186 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S +L+ L IA PTE V+GL D N +A+ L +K+RP LI +D Sbjct: 7 SGSLQDCVNHLKQHAVIAYPTEAVFGLGCDPDNESAVMALLALKRRPVEKGLILIAADYG 66 Query: 69 MVKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-T 124 + + S + WPGP+T V+ T T + RV Sbjct: 67 QLMPYVSDHVLTAMQRERMFACWPGPVTFVVPAAPHT--PRWLTGQFDSLAIRVSDHPDV 124 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + L +G PL SAN SGQ V + P +++G S I +V Sbjct: 125 QALCRAFGKPLVSTSANLSGQPPCRTVDEVKR-QFGPAFP-VLNGNTGGRLNPSEIRDVI 182 Query: 185 CEKKVR 190 ++R Sbjct: 183 SGNQIR 188 >gi|325300388|ref|YP_004260305.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides salanitronis DSM 18170] gi|324319941|gb|ADY37832.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides salanitronis DSM 18170] Length = 203 Score = 162 bits (410), Expect = 9e-38, Method: Composition-based stats. Identities = 47/198 (23%), Positives = 80/198 (40%), Gaps = 8/198 (4%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR-PAMNPLICHVS 65 D + L+ + L+ G I PT+T+Y + + I ++ +K P N L Sbjct: 10 NDPDVLQHIVDILNDGGIIIYPTDTMYAMGCHALKERPIEKICRLKNLNPKKNNLSIICY 69 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFT 124 D+S + ++A V + L K PGP T +L S P N K RVP Sbjct: 70 DLSNISEYAQVGNATFKLMKRNLPGPFTFILKADSRL---PKIFRNRKEVGIRVPGNPII 126 Query: 125 KKLIETYGHPLAIPSANRS--GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 +++ P+ + I ++ E+ L+IDGGI + ST++N Sbjct: 127 REICRLLDAPILTTTLPLHEGEDIEYVTDPELIDEKFGDEVDLVIDGGIGGV-EPSTVIN 185 Query: 183 VQCEKKVRILRPGGLEIE 200 + + + G+ IE Sbjct: 186 CCEDMPEIVRQGKGILIE 203 >gi|302802275|ref|XP_002982893.1| hypothetical protein SELMODRAFT_234090 [Selaginella moellendorffii] gi|300149483|gb|EFJ16138.1| hypothetical protein SELMODRAFT_234090 [Selaginella moellendorffii] Length = 201 Score = 162 bits (410), Expect = 9e-38, Method: Composition-based stats. Identities = 63/196 (32%), Positives = 101/196 (51%), Gaps = 5/196 (2%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +I + T N +R A L G I++PT+T+YGLA D+ + A+ R+YEIK R A +PL Sbjct: 8 KIWAATQEN-VRHAIAALRHGDVISVPTDTLYGLAADACSRVALERIYEIKGRNAGSPLA 66 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 V+D+ +K++A +D L L PGP+TLVL+ +++ L + R+P Sbjct: 67 VCVADVPDLKRYARIDHLPDALLHDLLPGPVTLVLNRGDKSELEKSLNPGLLSIGIRIPD 126 Query: 122 -GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-ST 179 F + + + LA+ SAN S + S V+ + + + D G G ST Sbjct: 127 SDFIRSVARAFDGALALTSANTSSKPSSICVEE--FEHLWPQCAAVFDAGELSAGRAGST 184 Query: 180 IVNVQCEKKVRILRPG 195 IV++ E ++LR G Sbjct: 185 IVDLTAEASFKVLRAG 200 >gi|92112840|ref|YP_572768.1| Sua5/YciO/YrdC/YwlC [Chromohalobacter salexigens DSM 3043] gi|91795930|gb|ABE58069.1| Sua5/YciO/YrdC/YwlC [Chromohalobacter salexigens DSM 3043] Length = 206 Score = 162 bits (410), Expect = 9e-38, Method: Composition-based stats. Identities = 45/188 (23%), Positives = 76/188 (40%), Gaps = 4/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + L G IA PT++ Y L + AI ++ ++ + SD+S Sbjct: 14 KRLIDQTLTILRGGGVIAYPTDSGYALGCCLGDKKAIEKIKWLRSLDDKHNFTLMCSDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD L K PGP T +L+ S L ++ RVP T L Sbjct: 74 EIGTYAKVDNAVFRLLKAHTPGPYTFILNATSEVP-RLLLHPKRRSIGVRVPDHRITHAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ G PL + G+ ++ + +IDGG + +T+V+V+ E Sbjct: 133 LDALGEPLMSVTLIPVGEDLPMTDPEVIRDRFGAHLDAVIDGGACHLD-PTTVVDVR-EI 190 Query: 188 KVRILRPG 195 I+R G Sbjct: 191 PPTIVREG 198 >gi|226943682|ref|YP_002798755.1| Sua5/YciO/YrdC/YwlC family protein [Azotobacter vinelandii DJ] gi|226718609|gb|ACO77780.1| Sua5/YciO/YrdC/YwlC family protein [Azotobacter vinelandii DJ] Length = 209 Score = 162 bits (410), Expect = 9e-38, Method: Composition-based stats. Identities = 45/187 (24%), Positives = 83/187 (44%), Gaps = 6/187 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +R+A E + G I PT+ Y L N + R+ +++ + SD+S + Sbjct: 17 VRQAVEIVRGGGVIVYPTDASYALGCQLGNKAGLERIRRLRQLDDRHNFTLVCSDLSQLS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVP-CGFTKKLIE 129 A VD + L K + PGP T +L ++ ++ + +T R+P + L+ Sbjct: 77 LFARVDTGAFRLLKTWTPGPYTFIL--HASREVPRIMLHPKRRTIGLRIPANPIAQALLA 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL S G+ + + + +++ LI+DGG + ST+V++ E + Sbjct: 135 ELGEPLMSASLILPGETLPLSDPEEMRRRLERQVDLIVDGGAGTL-EASTVVSLL-EGEP 192 Query: 190 RILRPGG 196 +LR G Sbjct: 193 EVLRVGC 199 >gi|292489809|ref|YP_003532699.1| hypothetical protein EAMY_3346 [Erwinia amylovora CFBP1430] gi|291555246|emb|CBA23517.1| Uncharacterized protein yrdC [Erwinia amylovora CFBP1430] gi|312173992|emb|CBX82245.1| Uncharacterized protein yrdC [Erwinia amylovora ATCC BAA-2158] Length = 190 Score = 162 bits (410), Expect = 9e-38, Method: Composition-based stats. Identities = 55/192 (28%), Positives = 83/192 (43%), Gaps = 9/192 (4%) Query: 4 MSITDS-NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 M + ++L + E L IA PTE V+GL D + A+ RL +K+RP LI Sbjct: 1 MKMNPEVDSLAQCVEQLAQSKVIAYPTEAVFGLGCDPDSEEAVMRLLALKQRPVEKGLIL 60 Query: 63 HVSDISMVKKHASVDPL-SLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 +D + + + L + A++F WPGP+T VL STT T T RV Sbjct: 61 IAADYQQLMPWIADEQLSAEQKARMFSRWPGPVTWVLPARSTT--PGWLTGRFTTLAVRV 118 Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 L +G PL SAN SG + +L + ++ P ++ G S Sbjct: 119 SDHPDVIALCNAFGKPLVSTSANLSGLPPCRHAAEVL-AQFGRDFP-VLKGETGGRLNPS 176 Query: 179 TIVNVQCEKKVR 190 I +V + +R Sbjct: 177 EIRDVLSGELIR 188 >gi|239816993|ref|YP_002945903.1| Sua5/YciO/YrdC/YwlC family protein [Variovorax paradoxus S110] gi|239803570|gb|ACS20637.1| Sua5/YciO/YrdC/YwlC family protein [Variovorax paradoxus S110] Length = 211 Score = 162 bits (410), Expect = 1e-37, Method: Composition-based stats. Identities = 48/198 (24%), Positives = 81/198 (40%), Gaps = 6/198 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 L++A L G +A+PT++ Y LA + A+ +L I++ + L D+S Sbjct: 14 QRLLKQAAALLQRGEIVAVPTDSSYALACHLDDKDAVDQLRRIRQVDEKHHLTLLCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD L K PGP T +L+ +S KT RVP +L Sbjct: 74 ELANYARVDNKQYRLLKAATPGPYTFLLEATKEVP-RRVSHPQRKTIGLRVPDHKVLLEL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ--- 184 + +G PL + G+ N + K+I +ID G +T+V++ Sbjct: 133 LMLHGAPLLATTLIAPGETEALNDAQTIRERFEKQIGAVIDAGACPS-QPTTVVDLTPMG 191 Query: 185 CEKKVRILRPGGLEIETL 202 ++R G + L Sbjct: 192 TGDDPVVVRQGRGTLAVL 209 >gi|330831504|ref|YP_004394456.1| putative ribosome maturation factor rimN [Aeromonas veronii B565] gi|328806640|gb|AEB51839.1| Putative ribosome maturation factor rimN [Aeromonas veronii B565] Length = 186 Score = 162 bits (410), Expect = 1e-37, Method: Composition-based stats. Identities = 49/187 (26%), Positives = 79/187 (42%), Gaps = 7/187 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 N +A L IA TE V+GL D + A++RL IK+RP LI +D+ Sbjct: 2 PNEFEQAVAALQQEGVIAYATEAVFGLGCDPDSEVAVQRLLAIKQRPVEKGLILIAADVE 61 Query: 69 MVKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-T 124 ++ + + LS L + WPGP T ++ +TT T +T RV Sbjct: 62 QLQDYIDLSQLSGEQLARVEASWPGPFTWIMPARATTPA--WLTGQFETLAVRVTAHPQV 119 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + L +G PL SAN +G+ V + + ++ I+ G + S I + + Sbjct: 120 QALCRAFGKPLVSTSANLTGEEPARRVAD-IGERLASKLAYILPGEVGGQANPSEIKDAR 178 Query: 185 CEKKVRI 191 +R Sbjct: 179 TGAIIRP 185 >gi|304386703|ref|ZP_07368976.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis ATCC 13091] gi|304339218|gb|EFM05299.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis ATCC 13091] Length = 224 Score = 162 bits (410), Expect = 1e-37, Method: Composition-based stats. Identities = 40/189 (21%), Positives = 76/189 (40%), Gaps = 5/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E ++ G + PT++ Y L + A+ R+ I+K + L +D+S Sbjct: 32 ERLIKQAVEIVNQGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLS 91 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A +D + K PGP T +L L KT R+P + L Sbjct: 92 ELGTYAKIDNVQFRQLKAATPGPYTFILQATKEVPARTL-HPKRKTIGLRIPDNAIAQAL 150 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + + + + + L+IDGG +T+V++ Sbjct: 151 LGELGEPLLSCTLMLPEDGEPLTDPYEIRERLEHAVDLVIDGGWCGT-EPTTVVDMTDGT 209 Query: 188 KVRILRPGG 196 ++ +R G Sbjct: 210 EL--VRRGC 216 >gi|71903504|ref|YP_280307.1| SUA5 protein [Streptococcus pyogenes MGAS6180] gi|71802599|gb|AAX71952.1| SUA5 protein [Streptococcus pyogenes MGAS6180] Length = 206 Score = 162 bits (410), Expect = 1e-37, Method: Composition-based stats. Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 6/188 (3%) Query: 16 CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75 +++G + +PTETVYGL + + A+ +Y++K+RP + +V+D + + + Sbjct: 15 ASIIESGDALVLPTETVYGLFAKALDEKAVNAVYDLKQRPRDKAMNLNVADFNSILAFSK 74 Query: 76 VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHP 134 P L L + F PGPLT++L + + + L T FR+P + P Sbjct: 75 EQPRYLKKLYQAFLPGPLTIILK--ANDQVPYWINSGLSTVGFRLPSHPITTALIQKTGP 132 Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194 L PSAN SG+ S HI+ + D ++ G +STI+++ E+ V ILR Sbjct: 133 LIGPSANLSGKASGRVFDHIMQDFDFQVFGYADDPFLT--GKDSTILDLSGERAV-ILRQ 189 Query: 195 GGLEIETL 202 G + E L Sbjct: 190 GAITKEEL 197 >gi|254412598|ref|ZP_05026371.1| Sua5/YciO/YrdC/YwlC family protein [Microcoleus chthonoplastes PCC 7420] gi|196180333|gb|EDX75324.1| Sua5/YciO/YrdC/YwlC family protein [Microcoleus chthonoplastes PCC 7420] Length = 221 Score = 161 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 86/198 (43%), Gaps = 12/198 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + K + L G + PT+TVY + D +A+ R+ +K+ PL S +S + Sbjct: 17 IEKIRDNLQDGAVMLYPTDTVYAIGCDLNVKSAVERVRRLKQLSNEKPLTFLCSSLSNIS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKKLIE 129 ++A V + + K PGP T +L +T + L + KT+ RVP + ++E Sbjct: 77 EYAWVSDPAYRIMKRLIPGPYTFLLP--ATKLVPRLVMSPKRKTSGIRVPDHPVCQAILE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHI------LSSSICKEIPLIIDGGISKIGLESTIVNV 183 G+P+ SA+ ++ N + L + +I+D G STI+++ Sbjct: 135 ALGNPVISTSAHLPDEMG--NFPTVGLETARLFDQFEGLVDIIVDDGSKPGVQVSTILDM 192 Query: 184 QCEKKVRILRPGGLEIET 201 ++ + + G + Sbjct: 193 TGDEPTILRKGLGAQAAM 210 >gi|218129310|ref|ZP_03458114.1| hypothetical protein BACEGG_00887 [Bacteroides eggerthii DSM 20697] gi|317475279|ref|ZP_07934545.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides eggerthii 1_2_48FAA] gi|217988487|gb|EEC54808.1| hypothetical protein BACEGG_00887 [Bacteroides eggerthii DSM 20697] gi|316908533|gb|EFV30221.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides eggerthii 1_2_48FAA] Length = 204 Score = 161 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 50/196 (25%), Positives = 81/196 (41%), Gaps = 11/196 (5%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICH 63 + L++ + L+ G I PT+T+Y + AI R+ ++K P N L Sbjct: 8 KNNSAADLQQVIDILNNGGIIIYPTDTMYAIGCHGLKERAIERICQLKAIDPKKNNLSII 67 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 D+S + ++A D + L K PGP T +L+ T P N K R+P Sbjct: 68 CYDLSSISEYAKFDNNTFKLMKRNLPGPFTFILN---GTVRLPKIFRNRKEVGIRMPDNP 124 Query: 123 FTKKLIETYGHPLAIPSANRS--GQISITNVKHILSSSICKEIPLIIDGGISKIGLE-ST 179 ++L P+ + I ++ + L+IDGGI G+E ST Sbjct: 125 IIQELARFLDAPIMTTTLPYEENEDIEYCTDPELIDEKFGNIVDLVIDGGIG--GIESST 182 Query: 180 IVNVQCEKKVRILRPG 195 IV+ + I+R G Sbjct: 183 IVDCT-NGEAEIVRQG 197 >gi|239917334|ref|YP_002956892.1| translation factor SUA5 [Micrococcus luteus NCTC 2665] gi|281414186|ref|ZP_06245928.1| translation factor SUA5 [Micrococcus luteus NCTC 2665] gi|239838541|gb|ACS30338.1| translation factor SUA5 [Micrococcus luteus NCTC 2665] Length = 244 Score = 161 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 59/215 (27%), Positives = 95/215 (44%), Gaps = 8/215 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 NA+ +A E L + +PT+TVYG+ D+ +P A+ L K R P ++D Sbjct: 17 ENAVARAREVLADRGCVVLPTDTVYGIGADAFSPLAVAVLLAAKGRGRTMPPPVLIADRR 76 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 ++ A V + LA+ FWPG LTL+L T T T RVP + Sbjct: 77 VMAGLAYDVPEEAEALAERFWPGALTLILKSQPTLTWDLGET--RGTVALRVPDDAVARE 134 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + P+A+ SANR+G + T S + + + L +D G + STIV+ Sbjct: 135 LLYAVGPMAVSSANRTGMDAATTAD-AARSMLGESVALYLDAGPRESRDPSTIVDCTV-T 192 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQS 222 R+ R G + +E L+ + + + P + Sbjct: 193 PFRVARQGSVPLEELRAVVP---DLLAEGEEPPVA 224 >gi|311113382|ref|YP_003984604.1| Sua5/YciO/YrdC/YwlC family protein [Rothia dentocariosa ATCC 17931] gi|310944876|gb|ADP41170.1| Sua5/YciO/YrdC/YwlC family protein [Rothia dentocariosa ATCC 17931] Length = 349 Score = 161 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 58/209 (27%), Positives = 98/209 (46%), Gaps = 16/209 (7%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + A+ A E L+A I IPT+TVYG+A D+ + + +L K R P + D++ Sbjct: 15 TEAVEAAREALNAHETIVIPTDTVYGIACDAFSHQGVSKLLADKGRSRTMPPPVLIFDLA 74 Query: 69 MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + A + L FWPG LT++L + T T RVP F K Sbjct: 75 ALAGVADEIPNDVYDLGNKFWPGALTIILYSYPSLTWDLGET--QGTVAVRVPDDKFALK 132 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI-------SKIG--LE 177 L+ +G PLA+ SAN++GQ + + L+ + +++ L++D G +G Sbjct: 133 LLTEHG-PLAVSSANKTGQPAAAKAEEALN-QLGEDVTLVVDDGPRPAPQEDGSVGDSKP 190 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAI 206 STI++ ++R G + +E L+ + Sbjct: 191 STILDCTS-TPYVVVREGAITVEELREVV 218 >gi|221059790|ref|XP_002260540.1| dsRNA binding protein [Plasmodium knowlesi strain H] gi|193810614|emb|CAQ42512.1| dsRNA binding protein, putative [Plasmodium knowlesi strain H] Length = 545 Score = 161 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 65/221 (29%), Positives = 110/221 (49%), Gaps = 18/221 (8%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 ++ ++A + +PTETVYGL +S + ++R ++E+K RP +P+I HV DI Sbjct: 18 KRLKAHIEADCLVGMPTETVYGLGGNSLSEKSLRNIFEMKNRPVSDPIISHVYDIKQAFD 77 Query: 73 ---HASVDPL--SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126 H +V + L+K FWPGPL+++ + ++ + TA+ R+P + Sbjct: 78 QLYHVNVFEMFTIYTLSKYFWPGPLSII--AKAKKELPLILTAHTGFCAVRMPRNNIAIE 135 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV--- 183 +I+ P+A PSAN+ IS T H+ KE +I D G IG+EST++ + Sbjct: 136 IIKVSQVPIAAPSANKFQHISPTTSAHVFQE-FEKEKIIIFDDGQCDIGIESTVLKLVKF 194 Query: 184 --QCEKKVRILRPGGLEIETL-KRAISVELEY---CVDETS 218 ++K L G E + + ++ + EY C DE Sbjct: 195 KKTGDRKPNRLSGAGETCEAIQEEEVTTDDEYEKECTDEME 235 Score = 49.7 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 66/179 (36%), Gaps = 51/179 (28%) Query: 193 RPGGLEIE---------TLKRAISVELEYCVDETSTPQ-------SPGMLKSHYAPRSQV 236 R GG++ E ++K A++ L C+ + + SPG+L +HY+P Sbjct: 354 REGGIQAEGTLDGSVNGSVKAALNSCLSNCLGGNTAEEEEVQNEVSPGLLLTHYSPVVST 413 Query: 237 RLRAIHVNP------------------REALIRFGNVPIKNIENAIISLNLSKTG-KLKE 277 L + R L+ G+ + N + +N+S G KE Sbjct: 414 YLLDGAADEGEQSELMRKNPIAKISLGRCVLLDIGDSFELHQGNFLKYINISYEGVDTKE 473 Query: 278 -----AAFNLFNYMKIADDSGASS----IAFS-----SIPNHGLGIAINNRLERAAAPR 322 N F +++ A++ I S + L +I +R+ RAA+ R Sbjct: 474 EQTKLVMKNFFLFLRQAEELAIEYQAEGILISILNLKCVDERNL--SIFDRIFRAASGR 530 >gi|224026554|ref|ZP_03644920.1| hypothetical protein BACCOPRO_03311 [Bacteroides coprophilus DSM 18228] gi|224019790|gb|EEF77788.1| hypothetical protein BACCOPRO_03311 [Bacteroides coprophilus DSM 18228] Length = 188 Score = 161 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 49/190 (25%), Positives = 90/190 (47%), Gaps = 8/190 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++KACE + G I PT+TV+G+ D+ N A++R+YEIK+R ++ V Sbjct: 3 KDEIKKACEVMQKGGVILYPTDTVWGIGCDATNEEAVKRVYEIKQRSDSKAMLVLVDSPV 62 Query: 69 MVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKK 126 V + P ++ L + PLT++ D ++ P A + RV F+K+ Sbjct: 63 KVDFYVQDVPSVAWDLIE-LTTKPLTVIYD--GARNLAPNLLAEDGSVGIRVTNEEFSKQ 119 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQ 184 L + + SAN SGQ + +S I + + ++D + G S+I+ + Sbjct: 120 LCFRFRKAIVSTSANISGQPAPAVFSE-ISEEIKQAVDYVVDYRREETGHPKPSSIIKLG 178 Query: 185 CEKKVRILRP 194 +V+++R Sbjct: 179 RTGEVKVIRE 188 >gi|238758797|ref|ZP_04619971.1| Ribosomal modification protein RimN [Yersinia aldovae ATCC 35236] gi|238703094|gb|EEP95637.1| Ribosomal modification protein RimN [Yersinia aldovae ATCC 35236] Length = 190 Score = 161 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 48/192 (25%), Positives = 77/192 (40%), Gaps = 8/192 (4%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 ++ + +L+ L IA PTE V+GL D + A+ L +K+RP LI Sbjct: 1 MIKPEEDTSLKNVLRALQQDEVIAYPTEAVFGLGCDPDSEKAVNALLALKQRPWQKGLIL 60 Query: 63 HVSDISMVKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 ++ +K + L+ WPGP+T V+ T + T + + RV Sbjct: 61 IAANYEQLKPYVDDSALTDAQRETIFSVWPGPVTWVIPASPETPL--WLTGSFDSLAVRV 118 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 +KL YG PL SAN SGQ + + +P ++ G + S Sbjct: 119 SAHPLVQKLCSQYGKPLVSTSANLSGQEPCRTEEEV-RIQFGSSLP-VLSGEVGGRLNPS 176 Query: 179 TIVNVQCEKKVR 190 I + K+ R Sbjct: 177 EIKDALTGKQFR 188 >gi|212632972|ref|YP_002309497.1| Sua5/YciO/YrdC/YwlC [Shewanella piezotolerans WP3] gi|212554456|gb|ACJ26910.1| Sua5/YciO/YrdC/YwlC [Shewanella piezotolerans WP3] Length = 187 Score = 161 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 47/180 (26%), Positives = 73/180 (40%), Gaps = 7/180 (3%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 + + G IA PTE VYGL D N AI L IK+RP LI + + + Sbjct: 9 VADIIKGGGVIAYPTEAVYGLGCDPDNDDAINHLLSIKQRPWQKGLILVAGEYQQLLPYI 68 Query: 75 SVDPLSLH---LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIET 130 LS A+ WPGP T ++ + + L T + + RV + L Sbjct: 69 DESQLSAEQLAFAQSKWPGPFTFIMP--AKPGLSTLLTGSFDSIAVRVTAHPDVQALCAA 126 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 P+ SAN SG +V+ + + I ++ G + STI++ + +R Sbjct: 127 INKPIVSTSANLSGLEPALSVETV-KQQFNRAIFAVVMGELGTQTAPSTIIDARSGNIIR 185 >gi|212703472|ref|ZP_03311600.1| hypothetical protein DESPIG_01516 [Desulfovibrio piger ATCC 29098] gi|212673086|gb|EEB33569.1| hypothetical protein DESPIG_01516 [Desulfovibrio piger ATCC 29098] Length = 222 Score = 161 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 59/204 (28%), Positives = 88/204 (43%), Gaps = 12/204 (5%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 A L G +A PTET YGL + A+ R+Y+ K+RP PL + +++ Sbjct: 13 EDAARRLRDGGVLAFPTETFYGLGCCADQAVAVARVYQAKRRPVHMPLPLLAGSLELLRP 72 Query: 73 HASVDPLSLHLAKLFWPGPLTLVL-----DLLSTTDIHPLSTANLKTACFR-VPCGFTKK 126 + +++ L FWPGPLT+VL L + P A R P + Sbjct: 73 YVTLEQAPEALLTAFWPGPLTVVLTARLTPLEGRRPLAPQLVNPRGKAAVRLTPHPLAAR 132 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSI-----CKEIPLIIDGGISKIGLESTIV 181 L G PL SAN SGQ + V L + + +++ G G+ STIV Sbjct: 133 LSCLAGEPLTASSANISGQ-AAARVPDELDERLLAALTGPDDGVVVSGPAPAGGVPSTIV 191 Query: 182 NVQCEKKVRILRPGGLEIETLKRA 205 +R+LR G + +E L+ A Sbjct: 192 EPLAGTDLRVLRLGAVSLEALRAA 215 >gi|257069073|ref|YP_003155328.1| Sua5/YciO/YrdC/YwlC family protein [Brachybacterium faecium DSM 4810] gi|256559891|gb|ACU85738.1| Sua5/YciO/YrdC/YwlC family protein [Brachybacterium faecium DSM 4810] Length = 347 Score = 161 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 49/189 (25%), Positives = 86/189 (45%), Gaps = 5/189 (2%) Query: 20 DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDP 78 +G I +PT+TVYG+ D+ P A++ L E K R P + D +++ A V Sbjct: 24 RSGDLIVLPTDTVYGIGADAFTPEAVQALLEAKGRGRDTPPPVLIGDHAVLLALATDVPD 83 Query: 79 LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIP 138 L + WPG LT++L + T + R+P + PLA+ Sbjct: 84 YIEDLTEELWPGALTVILTAQPSLTWDLGET--RGSVALRMPEDEVALELLRRTGPLAVS 141 Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLE 198 SANR G+ + +V ++ + + + +DGG +++G STI++ I+R G + Sbjct: 142 SANRHGRPAAQSVLDA-ATQLGDSVEIYLDGGPARLGESSTILDATV-TPPEIVREGAIT 199 Query: 199 IETLKRAIS 207 E + + Sbjct: 200 KEQIIAVVG 208 >gi|126178386|ref|YP_001046351.1| Sua5/YciO/YrdC/YwlC family protein [Methanoculleus marisnigri JR1] gi|125861180|gb|ABN56369.1| translation factor SUA5 [Methanoculleus marisnigri JR1] Length = 191 Score = 161 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 53/198 (26%), Positives = 84/198 (42%), Gaps = 13/198 (6%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + + A L + PTETVYGL D+ + A+ R+YE K RP P+ VSD+ M Sbjct: 2 DPIDMAVRVLSRDGLVVYPTETVYGLGADALSEDAVMRVYEAKNRPLGKPISIAVSDMEM 61 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + A VD + + F PGP+T++L + + + + T R P +I Sbjct: 62 LAAVAVVDDAARAFIERFLPGPVTVLLP--AKSCLPAVLTGGTGLIGVRWPDHEIAAAII 119 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 P+ SAN S I T + ++DGG G ST+V++ Sbjct: 120 ARLDAPITSTSANISDDIPPTRPDEVSVP-----HDYLVDGGELP-GTPSTVVDL----P 169 Query: 189 VRILRPGGLEIETLKRAI 206 R + G E ++ + Sbjct: 170 ARRVLRKGAGWEAVEAFL 187 >gi|212716443|ref|ZP_03324571.1| hypothetical protein BIFCAT_01367 [Bifidobacterium catenulatum DSM 16992] gi|212660696|gb|EEB21271.1| hypothetical protein BIFCAT_01367 [Bifidobacterium catenulatum DSM 16992] Length = 220 Score = 161 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 60/214 (28%), Positives = 98/214 (45%), Gaps = 7/214 (3%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M + +L +A E + G I IPT+TVYG+A D RN AIR+++ K+RP L Sbjct: 1 MSEIRAISDESLAQAVEIVRDGGLIVIPTDTVYGVACDPRNIEAIRKVFAAKQRPKYKSL 60 Query: 61 ICHVSDISMVKKHASVDPLSL-HLAKLFWPG---PLTLVLDLLSTTDIHPLSTANLKTAC 116 + I ++K P+ L L+ +F PG P+ + D + + T Sbjct: 61 QVLLPSIESLEKLHLDLPVPLNRLSAMFMPGAFSPIAVAGDNCTLATVRTDPATGKATQG 120 Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P + PLA SANRSG S V + + + L +DGG + + Sbjct: 121 VRIPNSAAALRVLRTTGPLAATSANRSGDESAQTVDEAVQA-FGDAVDLYLDGGATPGHV 179 Query: 177 ESTIV--NVQCEKKVRILRPGGLEIETLKRAISV 208 ST+V + + ILR G + +++A+++ Sbjct: 180 ASTVVAADPHGRDGIAILREGVIREPVIRKALTL 213 >gi|198276895|ref|ZP_03209426.1| hypothetical protein BACPLE_03100 [Bacteroides plebeius DSM 17135] gi|198270420|gb|EDY94690.1| hypothetical protein BACPLE_03100 [Bacteroides plebeius DSM 17135] Length = 188 Score = 161 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 50/190 (26%), Positives = 90/190 (47%), Gaps = 8/190 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++KACE L G I PT+TV+G+ D+ N A++R++EIK+R ++ V Sbjct: 3 KDEIKKACEVLQKGGVILYPTDTVWGIGCDATNEEAVKRVFEIKQRADSKAMLVLVDSPV 62 Query: 69 MVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKK 126 V + P ++ L ++ PLT++ D ++ P A + RV F+K+ Sbjct: 63 KVDFYVQDVPSVAWDLIEMTT-KPLTIIYD--GARNLAPNLIAADGSVGIRVTSEEFSKQ 119 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQ 184 L + + SAN SGQ + ++ I + + ++D + G S+IV + Sbjct: 120 LCFRFRKAIVSTSANISGQPAPAVFSE-ITEEIKQAVDYVVDYRREETGHPKPSSIVKLG 178 Query: 185 CEKKVRILRP 194 V+I+R Sbjct: 179 KGGVVKIIRE 188 >gi|237735225|ref|ZP_04565706.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|229380970|gb|EEO31061.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 201 Score = 161 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 66/207 (31%), Positives = 104/207 (50%), Gaps = 8/207 (3%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M +S+ + NA+ + + + +A PTETV+GL V + A+ LYE+K R + Sbjct: 1 MNTVSV-EKNAIEEVAKLVSDSRVVAFPTETVFGLGVKFGSHQALDALYELKHRDKGKAI 59 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 +S ++K+A VD + L F PG +T++L I TA+L T R+P Sbjct: 60 SMMISKAEDIEKYAYVDETAKKLIAAFMPGMITIILKKRPH--IDDYFTASLDTIGIRIP 117 Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 F L++ G P+ + SAN SG+ S+ + K ++ +IPLI+ G S ST Sbjct: 118 DDPFVLSLLDKTG-PMLVTSANLSGENSLVDDKAVMK-VFHGKIPLIVKGE-SISKKAST 174 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAI 206 IV++ KV ILR G + E + I Sbjct: 175 IVDLSK-GKVEILRLGDISKEQIAEVI 200 >gi|94310010|ref|YP_583220.1| Sua5/YciO/YrdC/YwlC [Cupriavidus metallidurans CH34] gi|93353862|gb|ABF07951.1| putative translation factor (SUA5) [Cupriavidus metallidurans CH34] Length = 215 Score = 161 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 47/193 (24%), Positives = 86/193 (44%), Gaps = 4/193 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +++A + + G IA+PT++ Y LA + A+ +L +++ + L SD+S Sbjct: 14 ARLVKQAAQIVRQGGLIALPTDSSYALACQIDDKAAVEQLRRLREIDEKHHLTLMCSDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKL 127 + A VD K PGP +L+ LS KT RVP L Sbjct: 74 ELGNFARVDNRQYRWIKGATPGPYVFILEATKEVP-RRLSHPARKTIGVRVPEHPIPLAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + G + N + + + K + L+IDGG + +T++++ + Sbjct: 133 VAELGQPLISATLQLPGDDAPMNDPAEIRARLEKRLDLVIDGGPAPA-QPTTVIDLTSGE 191 Query: 188 KVRILRPGGLEIE 200 V ++R G ++E Sbjct: 192 PV-LVRAGRGDVE 203 >gi|300114807|ref|YP_003761382.1| Sua5/YciO/YrdC/YwlC family protein [Nitrosococcus watsonii C-113] gi|299540744|gb|ADJ29061.1| Sua5/YciO/YrdC/YwlC family protein [Nitrosococcus watsonii C-113] Length = 209 Score = 161 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 43/188 (22%), Positives = 73/188 (38%), Gaps = 4/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 L +A FL I PT++ Y L N A R+ +++ + D+S Sbjct: 14 QRLLNQAASFLRQEGLIVYPTDSGYALGCQVGNKAAADRIRQLRGLGNRHEFSLVSRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A V + L K PG T + L +T RVP T+ L Sbjct: 74 ELSLYAKVGNSAFRLLKALTPGAYTFIFKATREVP-RRLQDPKRRTIGIRVPANTVTQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + T G PL + G+ + + ++ LIIDGG +T+V++ + Sbjct: 133 LTTLGEPLISSTLILPGEDIPLTDPEEIRDRMGGQVDLIIDGGYCGF-EPTTVVDLVEDM 191 Query: 188 KVRILRPG 195 +++R G Sbjct: 192 P-KVIREG 198 >gi|139473766|ref|YP_001128482.1| hypothetical protein SpyM50925 [Streptococcus pyogenes str. Manfredo] gi|134272013|emb|CAM30252.1| conserved hypothetical protein [Streptococcus pyogenes str. Manfredo] Length = 196 Score = 161 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 6/188 (3%) Query: 16 CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75 +++G + +PTETVYGL + + A+ +Y++K+RP + +V+D + + + Sbjct: 5 ASIIESGDALVLPTETVYGLFAKALDEKAVNAVYDLKQRPRDKAMNLNVADFNSILAFSK 64 Query: 76 VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHP 134 P L L + F PGPLT++L + + + L T FR+P + P Sbjct: 65 EQPRYLKKLYQAFLPGPLTIILK--ANDQVPYWINSGLSTVGFRLPSHPITTALIQKTGP 122 Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194 L PSAN SG+ S HI+ + D ++ G +STI+++ E+ V ILR Sbjct: 123 LIGPSANLSGKASGRVFDHIMQDFDFQVFGYADDPFLT--GKDSTILDLSGERAV-ILRQ 179 Query: 195 GGLEIETL 202 G + E L Sbjct: 180 GAITKEEL 187 >gi|161616428|ref|YP_001590393.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167554199|ref|ZP_02347940.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168245229|ref|ZP_02670161.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168264717|ref|ZP_02686690.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|194449529|ref|YP_002047427.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197250333|ref|YP_002148323.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|198243534|ref|YP_002217366.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|224585197|ref|YP_002638996.1| ribosome maturation factor [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238913883|ref|ZP_04657720.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|212288230|sp|A9N8A7|RIMN_SALPB RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|212288266|sp|Q57J68|RIMN_SALCH RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|161365792|gb|ABX69560.1| hypothetical protein SPAB_04243 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194407833|gb|ACF68052.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197214036|gb|ACH51433.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197938050|gb|ACH75383.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205321544|gb|EDZ09383.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205336011|gb|EDZ22775.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205346875|gb|EDZ33506.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|224469725|gb|ACN47555.1| hypothetical protein SPC_3471 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322615057|gb|EFY11981.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617344|gb|EFY14245.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625566|gb|EFY22391.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626408|gb|EFY23217.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632080|gb|EFY28833.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635041|gb|EFY31764.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322643258|gb|EFY39825.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646658|gb|EFY43165.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650004|gb|EFY46423.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322652721|gb|EFY49061.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659522|gb|EFY55766.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665536|gb|EFY61723.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322670430|gb|EFY66569.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670503|gb|EFY66637.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675079|gb|EFY71162.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681616|gb|EFY77645.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685960|gb|EFY81949.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195830|gb|EFZ81003.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196414|gb|EFZ81565.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202699|gb|EFZ87738.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207304|gb|EFZ92254.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211260|gb|EFZ96105.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216031|gb|EGA00762.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323223478|gb|EGA07806.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226792|gb|EGA10982.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231846|gb|EGA15956.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233201|gb|EGA17296.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237268|gb|EGA21333.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245503|gb|EGA29502.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249009|gb|EGA32931.1| tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250632|gb|EGA34513.1| tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256860|gb|EGA40574.1| tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263010|gb|EGA46557.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266010|gb|EGA49505.1| tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272767|gb|EGA56170.1| tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326625147|gb|EGE31492.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 190 Score = 161 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 49/184 (26%), Positives = 75/184 (40%), Gaps = 8/184 (4%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 ++ A + L+ IA PTE V+G+ D + TA+ RL +K+RP LI + + Sbjct: 9 SIAAAVDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIAASFEQL 68 Query: 71 KKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 K + L+ K WPGP+T V +TT T + RV Sbjct: 69 KPYIDDSILTAAQRKAVFDCWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTNHPLVVA 126 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L YG PL SAN SG V+ + + + P +++G S I + Sbjct: 127 LCNAYGKPLVSTSANLSGLPPCRTVEEV-RAQFGDDFP-VVEGATGGRLNPSEIRDALTG 184 Query: 187 KKVR 190 + R Sbjct: 185 ELFR 188 >gi|56460847|ref|YP_156128.1| Sua5 family translation factor [Idiomarina loihiensis L2TR] gi|56179857|gb|AAV82579.1| Possible translation factor, Sua5/YciO/YrdC/YwlC family [Idiomarina loihiensis L2TR] Length = 207 Score = 161 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 45/193 (23%), Positives = 78/193 (40%), Gaps = 4/193 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++++ + + + PT++ Y + N A R+ +I++ + D+S Sbjct: 14 ARLIQQSVQIIRKSGVVVYPTDSGYAIGCQIGNKAAADRICQIREIDKEHNFTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD + L K PGP T +L L KT RVP L Sbjct: 74 ELATYARVDNDAFRLLKNNTPGPYTFILKGTKEVP-KRLLNPKRKTIGIRVPTNRIAMAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E PL S + + + + K + LIIDGG K +T+V++ E Sbjct: 133 LEELNEPLMSTSLILGQGMLAESDPEEIRDKLEKLVDLIIDGGH-KGEEPTTVVDL-SEG 190 Query: 188 KVRILRPGGLEIE 200 I R G ++E Sbjct: 191 APTIRREGSGDVE 203 >gi|331007630|ref|ZP_08330772.1| Sua5 YciO YrdC YwlC family protein [gamma proteobacterium IMCC1989] gi|330418570|gb|EGG93094.1| Sua5 YciO YrdC YwlC family protein [gamma proteobacterium IMCC1989] Length = 189 Score = 161 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 41/183 (22%), Positives = 72/183 (39%), Gaps = 5/183 (2%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 ++ A + G IA PTE V+GL N A+ R+ +K+R LI S I+ Sbjct: 9 SILIAARIMRQGGVIAYPTEAVWGLGCLPDNKDAVHRILSLKQRHVSKGLILVASSIAQF 68 Query: 71 KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLI 128 + + + + WPGP T ++ +T + + + RV + L Sbjct: 69 EPYLRHITVEQRKTLENSWPGPFTWLVPHHNT--VPSWVSGKHSSIALRVSNHPHVRYLC 126 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSS-ICKEIPLIIDGGISKIGLESTIVNVQCEK 187 G P+ SAN G+ + + E+ I+ G + + STI ++ Sbjct: 127 NAVGGPIVSTSANPQGKPAPKQTWQVKRYFKHQPELDWIVSGCVGQRAEPSTITDLVTGV 186 Query: 188 KVR 190 +R Sbjct: 187 VIR 189 >gi|332534849|ref|ZP_08410672.1| YciO family protein [Pseudoalteromonas haloplanktis ANT/505] gi|332035709|gb|EGI72197.1| YciO family protein [Pseudoalteromonas haloplanktis ANT/505] Length = 206 Score = 161 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 45/196 (22%), Positives = 75/196 (38%), Gaps = 4/196 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A + + G + PT++ Y + + N A R+ I+ + D+S Sbjct: 14 PRLISQAVDIIKQGGVVVYPTDSGYAIGCNIGNKQAKERIERIRGIEKNDNFTLVCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGFTKKL 127 + +A VD L K PGP T + L KT RV L Sbjct: 74 ELSTYARVDNQLFRLIKNNTPGPYTFIFKGTKEVP-KRLLNDKKKTIGMRVIEHPIACAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL S GQ + + + K + LII GG +T++++ E Sbjct: 133 LAELGEPLMSCSLILPGQQFTESDPDEILERLDKHVDLIIHGGHLAE-QATTVIDL-SED 190 Query: 188 KVRILRPGGLEIETLK 203 +V+ILR G + + Sbjct: 191 EVKILRVGCGDTSPFE 206 >gi|119025466|ref|YP_909311.1| Sua5/YciO/YrdC family protein [Bifidobacterium adolescentis ATCC 15703] gi|154486893|ref|ZP_02028300.1| hypothetical protein BIFADO_00726 [Bifidobacterium adolescentis L2-32] gi|118765050|dbj|BAF39229.1| conserved protein in the Sua5/YciO/YrdC family [Bifidobacterium adolescentis ATCC 15703] gi|154084756|gb|EDN83801.1| hypothetical protein BIFADO_00726 [Bifidobacterium adolescentis L2-32] Length = 220 Score = 161 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 63/214 (29%), Positives = 102/214 (47%), Gaps = 7/214 (3%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M + + +L +A E + G + IPT+TVYG+A D RN AIR+++ K+RP L Sbjct: 1 MSEICTVNDESLARAVEIIHDGGLVVIPTDTVYGVACDPRNIEAIRKVFAAKQRPKYKSL 60 Query: 61 ICHVSDISMVKKHASVDPLSL-HLAKLFWPG---PLTLVLDLLSTTDIHPLSTANLKTAC 116 + I ++K P+ L LA +F PG P+ D S + T T Sbjct: 61 QVLLPSIESMEKLHLTLPVPLNRLAAMFMPGAFSPIAEAEDDCSLATLRHDPTTGKATQG 120 Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P I PLA SANRSG+ S V+ + ++ + L +DGG + + Sbjct: 121 VRIPNSAVALRILRATGPLAATSANRSGEESAQTVQEA-ADALGDAVDLYLDGGATPGHV 179 Query: 177 ESTIV--NVQCEKKVRILRPGGLEIETLKRAISV 208 ST+V + + ILR G + +++A+++ Sbjct: 180 SSTVVAADPHERDGIAILREGVIRELVIRKALTL 213 >gi|168468041|ref|ZP_02701878.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168823240|ref|ZP_02835240.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|195628882|gb|EDX48292.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|205340492|gb|EDZ27256.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320087848|emb|CBY97611.1| putative ribosome maturation factor rimN [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 190 Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats. Identities = 49/184 (26%), Positives = 75/184 (40%), Gaps = 8/184 (4%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 ++ A + L+ IA PTE V+G+ D + TA+ RL +K+RP LI + + Sbjct: 9 SIAAAVDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIAASFEQL 68 Query: 71 KKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 K + L+ K WPGP+T V +TT T + RV Sbjct: 69 KPYIDDSILTAAQRKAVFDCWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTNHPLVVA 126 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L YG PL SAN SG V+ + + + P +++G S I + Sbjct: 127 LCNAYGKPLVSTSANLSGLPPCRTVEEV-RAQFGDDFP-VVEGATGGRLNPSEIRDALTG 184 Query: 187 KKVR 190 + R Sbjct: 185 ELFR 188 >gi|195029409|ref|XP_001987565.1| GH19895 [Drosophila grimshawi] gi|193903565|gb|EDW02432.1| GH19895 [Drosophila grimshawi] Length = 250 Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats. Identities = 65/207 (31%), Positives = 104/207 (50%), Gaps = 9/207 (4%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 + ++ NAL+ A + L G IA+PT+TVYGLA D+ N AI+RLYEIK R A P+ Sbjct: 31 VYAVDALNALKLAEQCLQLGKVIALPTDTVYGLACDANNEEAIQRLYEIKGRDAHKPVAI 90 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC- 121 V+ I ++++ LS L PGPLT+V++ L+ + + R+P Sbjct: 91 CVNTIGALRRYGQASHLSDELLTRLLPGPLTIVIERTPQLSNRFLNPSTTR-IGIRIPDF 149 Query: 122 GFTKKLIETYG-HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI----SKIGL 176 F + L T+ PLA+ SANRS S ++ ++ ++ + D G + L Sbjct: 150 KFMRDLCGTWHEQPLALTSANRSSAPSSLHISE--FQALWPQLGAVFDAGRIGLSEERRL 207 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLK 203 ST++++ I+R G +TL Sbjct: 208 ASTVIDLVTPGCYDIVRSGVALKQTLA 234 >gi|254302246|ref|ZP_04969604.1| possible translation factor Sua5 [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322438|gb|EDK87688.1| possible translation factor Sua5 [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 217 Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats. Identities = 61/183 (33%), Positives = 91/183 (49%), Gaps = 9/183 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 + G I PT+TVYGL N +I +Y K R +PLI +S + V++ A V Sbjct: 25 IKKGSLIIYPTDTVYGLGAIVTNEQSINNVYLAKSRSFTSPLIALLSSVDKVEEVAYVSD 84 Query: 79 ----LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGH 133 L LAK FWPG LT++L I + + T R+P K+I+ G Sbjct: 85 KNKELLDKLAKAFWPGALTVILKRKEH--IPSIMVSGGDTIGVRIPNLDLAIKIIDLAGG 142 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 LA SAN SG+ + + LS +I ++ ++ID G K+G STI+++ + +ILR Sbjct: 143 ILATTSANISGEATPKSYDE-LSEAIKSKVDILIDSGECKLGEASTIIDLTSDVP-KILR 200 Query: 194 PGG 196 G Sbjct: 201 KGA 203 >gi|241662683|ref|YP_002981043.1| Sua5/YciO/YrdC/YwlC family protein [Ralstonia pickettii 12D] gi|240864710|gb|ACS62371.1| Sua5/YciO/YrdC/YwlC family protein [Ralstonia pickettii 12D] Length = 207 Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats. Identities = 49/197 (24%), Positives = 85/197 (43%), Gaps = 5/197 (2%) Query: 1 MQIMSITDS-NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 QI T +R+A E + +G +A+PT++ Y LA + +A+ RL ++ + Sbjct: 5 FQIHPTTPQGRLIRQAVEIIRSGGLVALPTDSCYALACHLDDKSAVERLRRVRGIDEKHH 64 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 L D+S + A VD + K PGP +L+ LS + KT RV Sbjct: 65 LTLMCRDLSELATFARVDNKQYRVLKAATPGPFVFLLEATKEVP-RRLSHPSRKTIGLRV 123 Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P L+ G PL + G N + + K++ L+IDGG + + Sbjct: 124 PEHAIPLALMAELGEPLLSATLQLPGDDEPLNEAETIRDRLEKQLELVIDGGPAPA-EPT 182 Query: 179 TIVNVQCEKKVRILRPG 195 T++++ + ++R G Sbjct: 183 TVIDLTGGEP-ELVRQG 198 >gi|117927851|ref|YP_872402.1| translation factor SUA5 [Acidothermus cellulolyticus 11B] gi|117648314|gb|ABK52416.1| translation factor SUA5 [Acidothermus cellulolyticus 11B] Length = 219 Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats. Identities = 55/210 (26%), Positives = 93/210 (44%), Gaps = 9/210 (4%) Query: 2 QIMSITDS----NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 Q+ +D L+ A + + G + +PT+TVYG+ D+ P A+ L K R Sbjct: 4 QVFDCSDPGQRTAGLQAAADAVRRGQLVVLPTDTVYGIGADAFTPAAVAALLAAKGRGRD 63 Query: 58 NPLICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 P+ V + A+ P + L FWPG LT+V+ + T T Sbjct: 64 MPVPVLVGSRPVFDALVAAAPPTAYALIDAFWPGGLTIVVRYNPSLAWDLGETNG--TVA 121 Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P + P+A+ SANRSG T + + + + + + +DGG + + Sbjct: 122 LRMPAEDLALELLQRTGPMAVSSANRSGLPPATTCANA-RAQLGEAVAVYLDGGPTTSTI 180 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAI 206 S+IV++ E +LR G +E E L+ + Sbjct: 181 PSSIVDLTGETP-TLLRSGAIEAERLREVV 209 >gi|212288265|sp|A9MN84|RIMN_SALAR RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN Length = 190 Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats. Identities = 50/184 (27%), Positives = 76/184 (41%), Gaps = 8/184 (4%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 ++ A + L+ IA PTE V+G+ D + TA+ RL E+K+RP LI + + Sbjct: 9 SIAAAVDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLELKQRPVDKGLILIAASFEQL 68 Query: 71 KKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 K + L+ K WPGP+T V +TT T + RV Sbjct: 69 KPYIDDSILTTAQRKAVFDCWPGPVTFVFPASATT--PRWLTGRFDSLAVRVTDHPLVVA 126 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L YG PL SAN SG V+ + + + P++ +G S I + Sbjct: 127 LCNAYGKPLVSTSANLSGLPPCRTVEEV-RAQFGDDFPMV-EGATGGRLNPSEIRDALTG 184 Query: 187 KKVR 190 + R Sbjct: 185 ELFR 188 >gi|195486789|ref|XP_002091655.1| GE13782 [Drosophila yakuba] gi|194177756|gb|EDW91367.1| GE13782 [Drosophila yakuba] Length = 251 Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats. Identities = 65/199 (32%), Positives = 101/199 (50%), Gaps = 9/199 (4%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 + + D AL+ A + L +G IA+PT+TVYGLA D+ N TAI+RLYEIK R P+ Sbjct: 35 VCPVGDEAALQLARQCLLSGQVIALPTDTVYGLACDANNETAIQRLYEIKGRDEHKPVAI 94 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC- 121 V +I+ +++ LS L PGPLT+V++ + L+ + K R+P Sbjct: 95 CVHNIAALRRFGQAAHLSDELLTRLLPGPLTIVIERTAQLSNRFLNPSTSK-IGIRIPDF 153 Query: 122 GFTKKLIETYG-HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI----SKIGL 176 F + L + PLA+ SANRS S V + S+ ++ + D G + L Sbjct: 154 NFIRDLCAVWHEQPLALTSANRSSAPSSLQV--VEFRSLWPQLGAVFDAGQIGLTEERRL 211 Query: 177 ESTIVNVQCEKKVRILRPG 195 ST++++ I+R G Sbjct: 212 ASTVIDLATPSYFEIVRAG 230 >gi|329942862|ref|ZP_08291641.1| yrdC domain protein [Chlamydophila psittaci Cal10] gi|332287455|ref|YP_004422356.1| putative Sua5/YciO/yrdC family protein [Chlamydophila psittaci 6BC] gi|325507262|gb|ADZ18900.1| putative Sua5/YciO/yrdC family protein [Chlamydophila psittaci 6BC] gi|328815122|gb|EGF85111.1| yrdC domain protein [Chlamydophila psittaci Cal10] gi|328914703|gb|AEB55536.1| Sua5/YciO/YrdC/YwlC family protein [Chlamydophila psittaci 6BC] Length = 288 Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats. Identities = 65/215 (30%), Positives = 108/215 (50%), Gaps = 17/215 (7%) Query: 4 MSITDSNA-LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 MS+TD + LR+A ++LD G IA PT+TVYGL V P A ++Y++K R L+ Sbjct: 1 MSVTDPDFFLRQAADYLDQGKVIAFPTDTVYGLGVALNYPNAEEKIYDLKHRDQGKSLVV 60 Query: 63 HVSDISMVKKH--ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV- 119 +V+ I ++K ++ +L L++ F PGPLTL++D H + + FR+ Sbjct: 61 YVNTIEDIEKFSGCTLSTHALKLSQKFLPGPLTLLVD-------HKNPRFHQEKLGFRIL 113 Query: 120 PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 KLI+ G PL SAN S K +L ++I + G GLEST Sbjct: 114 SIPIVNKLIDLAG-PLLGTSANISNFPPAITSKEVLEDFCQEDI--CVIPGCCSYGLEST 170 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV 214 ++ ++I R G + + ++ + +++ C+ Sbjct: 171 VI---SADPLKIYREGMIPHQVIEDVVGEKIDACL 202 >gi|260592176|ref|ZP_05857634.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella veroralis F0319] gi|260535810|gb|EEX18427.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella veroralis F0319] Length = 189 Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats. Identities = 43/192 (22%), Positives = 86/192 (44%), Gaps = 8/192 (4%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + + ++KA E + G I PT+TV+G+ D+ N A+ ++Y +K+R LIC V Sbjct: 1 MNQEDDIKKAIEVMKQGGIILYPTDTVWGIGCDATNAEAVAKVYSLKRRDDSKALICLVD 60 Query: 66 DISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GF 123 + ++++ + ++ L P TL+LD ++ P A + R+ F Sbjct: 61 SDNRLQRYVHNIPDVAWQLIDAV-EKPTTLILD--GAVNLAPNLIAEDGSIGIRITKEPF 117 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--GLESTIV 181 + +L + + SAN SG+ + N I + + + S+I+ Sbjct: 118 SHELCYRFQKAIVSTSANISGEPAAQNYCDISQEILDG-VDYVCQSRRQGHKPHTPSSII 176 Query: 182 NVQCEKKVRILR 193 + + +V+I+R Sbjct: 177 KLSVDGEVKIIR 188 >gi|260495584|ref|ZP_05815709.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33] gi|260196926|gb|EEW94448.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33] Length = 217 Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats. Identities = 61/183 (33%), Positives = 91/183 (49%), Gaps = 9/183 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 + G I PT+TVYGL N +I +Y K R +PLI +S + V++ A V Sbjct: 25 IKKGSLIIYPTDTVYGLGAVITNEQSINNVYLAKSRSFSSPLIALLSSVDKVEEVAYVSD 84 Query: 79 ----LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGH 133 L LAK FWPG LT++L I + + T R+P K+I+ G Sbjct: 85 KNKNLLKKLAKAFWPGALTVILKRKE--YIPSIMVSGGDTIGVRIPNLDLAIKIIDLAGG 142 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 LA SAN SG+ + + LS +I ++ ++ID G K+G STI+++ + +ILR Sbjct: 143 ILATTSANISGEATPKSYDE-LSEAIKSKVDILIDSGKCKLGEASTIIDLTSDVP-KILR 200 Query: 194 PGG 196 G Sbjct: 201 KGA 203 >gi|317124934|ref|YP_004099046.1| translation factor SUA5 [Intrasporangium calvum DSM 43043] gi|315589022|gb|ADU48319.1| translation factor SUA5 [Intrasporangium calvum DSM 43043] Length = 207 Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats. Identities = 38/194 (19%), Positives = 71/194 (36%), Gaps = 4/194 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + L G IA PT++ + L NP R+ I+ + +D + + Sbjct: 17 IAQAVQILRDGGLIAYPTDSGFALGCSLDNPDGRSRILRIRGLDDRHHFTLVCADFAQLG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 + A +D K PGP T ++ L +T R+P + L++ Sbjct: 77 QFAQLDNTVFRAVKSHTPGPYTFIVPATKQVP-RRLLHPKKRTVGVRIPDHPVVRALLQA 135 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 +G P+ + G + + + +ID G GLE T V + Sbjct: 136 HGEPILSSTLLMPGDEEPMTDGWAIKERLDHVVDAVIDSGEC--GLEPTTVVDFSDGYAE 193 Query: 191 ILRPGGLEIETLKR 204 ++R G + + Sbjct: 194 LIRVGAGDPSDFEA 207 >gi|200386898|ref|ZP_03213510.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199603996|gb|EDZ02541.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 190 Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats. Identities = 49/184 (26%), Positives = 75/184 (40%), Gaps = 8/184 (4%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 ++ A + L+ IA PTE V+G+ D + TA+ RL +K+RP LI + + Sbjct: 9 SIAAAVDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIAASFEQL 68 Query: 71 KKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 K + L+ K WPGP+T V +TT T + RV Sbjct: 69 KPYIDDSILTAAQRKAVFDCWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTNHPLVVA 126 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L YG PL SAN SG V+ + + + P +++G S I + Sbjct: 127 LCNAYGKPLVSTSANLSGLPPCRTVEEV-RAQFGDDFP-VVEGVTGGRLNPSEIRDALTG 184 Query: 187 KKVR 190 + R Sbjct: 185 ELFR 188 >gi|114562608|ref|YP_750121.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella frigidimarina NCIMB 400] gi|114333901|gb|ABI71283.1| translation factor SUA5 [Shewanella frigidimarina NCIMB 400] Length = 206 Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats. Identities = 46/207 (22%), Positives = 75/207 (36%), Gaps = 8/207 (3%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 Q I D N + +A L G I PT++ Y L A+ R+ I++ Sbjct: 3 QFFYIHDENPQARLINQAVAILKQGGVIVYPTDSGYALGCMIGEKNAMTRMARIRQIEND 62 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 D+S + A VD + L K PGP T + L +T Sbjct: 63 TNFSLMCRDLSELANFARVDNQAYRLLKSCMPGPYTFIFKATKEVP-RRLQCDKKRTIGI 121 Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 RVP L+E G P+ S + + + + + II GG Sbjct: 122 RVPNNIIALALLEALGEPMMTTSLVMPNEQFAESDPEHIRDILDHLVDGIIHGGYLPENQ 181 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLK 203 +T++++ ++ V ILR G + + Sbjct: 182 -TTVIDMSEDEMV-ILRHGAGDTSAFE 206 >gi|238754969|ref|ZP_04616318.1| hypothetical protein yruck0001_15210 [Yersinia ruckeri ATCC 29473] gi|238706828|gb|EEP99196.1| hypothetical protein yruck0001_15210 [Yersinia ruckeri ATCC 29473] Length = 186 Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats. Identities = 42/180 (23%), Positives = 71/180 (39%), Gaps = 4/180 (2%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 + L G I PT++ Y L A+ R+ I++ + D+S + +A V Sbjct: 2 DVLRKGGVIVYPTDSGYALGCRLEEKAAMERICRIRQLDGNHNFTLVCRDLSELSTYAHV 61 Query: 77 DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPL 135 D + L K PG T +L L KT RVP L++ G PL Sbjct: 62 DNSAFRLIKNNTPGNYTFILKATKEVP-RRLMNDKRKTIGLRVPSNPIALALLDVLGEPL 120 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 + G + + + K++ L+I GG S +T++++ E ++R G Sbjct: 121 MSTTLMLPGNDFAESDPEEIRDHLGKQVDLVIHGG-SLGQQPTTVIDLT-ESSPEVIREG 178 >gi|94988612|ref|YP_596713.1| sua5/YciO/YrdC/YwlC family protein [Streptococcus pyogenes MGAS9429] gi|94992436|ref|YP_600535.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pyogenes MGAS2096] gi|94542120|gb|ABF32169.1| sua5/YciO/YrdC/YwlC family protein [Streptococcus pyogenes MGAS9429] gi|94545944|gb|ABF35991.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pyogenes MGAS2096] Length = 206 Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats. Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 6/188 (3%) Query: 16 CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75 +++G + +PTETVYGL + + A+ +Y++K+RP + +V+D + + + Sbjct: 15 ASIIESGDALVLPTETVYGLFAKALDEKAVNAVYDLKQRPRDKAMNLNVADFNSILVFSK 74 Query: 76 VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHP 134 P L L + F PGPLT++L + + + L T FR+P + P Sbjct: 75 EQPRYLKKLYQAFLPGPLTIILK--ANDQVPYWINSGLSTVGFRLPSHPITTALIQKTGP 132 Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194 L PSAN SG+ S HI+ + D ++ G +STI+++ E+ V ILR Sbjct: 133 LIGPSANLSGKASGRVFDHIMQDFDFQVFGYADDPFLT--GKDSTILDLSGERAV-ILRQ 189 Query: 195 GGLEIETL 202 G + E L Sbjct: 190 GAITKEEL 197 >gi|16766691|ref|NP_462306.1| ribosome maturation factor [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167995177|ref|ZP_02576267.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|81521479|sp|Q8ZLN0|RIMN_SALTY RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|16421958|gb|AAL22265.1| putative translation factor [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|205327095|gb|EDZ13859.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261248559|emb|CBG26397.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995611|gb|ACY90496.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159945|emb|CBW19464.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914425|dbj|BAJ38399.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321226454|gb|EFX51504.1| YrdC subfamily, required for N6-threonylcarbamoyl adenosine t(6)A37 modification in tRNA [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323131760|gb|ADX19190.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332990254|gb|AEF09237.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 190 Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats. Identities = 49/184 (26%), Positives = 75/184 (40%), Gaps = 8/184 (4%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 ++ A + L+ IA PTE V+G+ D + TA+ RL +K+RP LI + + Sbjct: 9 SIAAAVDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIAASFEQL 68 Query: 71 KKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 K + L+ K WPGP+T V +TT T + RV Sbjct: 69 KPYIDDSILTAAQRKAVFDCWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTNHPLVVA 126 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L YG PL SAN SG V+ + + + P +++G S I + Sbjct: 127 LCNAYGKPLVSTSANLSGLPPCRTVEEV-RAQFGDDFP-VVEGATGGRLNPSEIRDALTG 184 Query: 187 KKVR 190 + R Sbjct: 185 ELFR 188 >gi|297250433|ref|ZP_06864286.2| Sua5/YciO/YrdC/YwlC family protein [Neisseria polysaccharea ATCC 43768] gi|296838895|gb|EFH22833.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria polysaccharea ATCC 43768] Length = 239 Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 76/189 (40%), Gaps = 5/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E ++ G + PT++ Y L + A+ R+ I+K + L +D+S Sbjct: 47 ERLIKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDQKHHLTLVCADLS 106 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A +D + K PGP T +L L KT R+P + L Sbjct: 107 ELGTYAKIDNVQFRQLKAATPGPYTFILQATKEVPARTL-HPKRKTIGLRIPDNAIAQAL 165 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + + + + + L+IDGG +T++++ Sbjct: 166 LGELGEPLLSCTLMLPEDGEPLTDPYEIRDRLEHAVDLVIDGGWCGTD-PTTVIDMTDGT 224 Query: 188 KVRILRPGG 196 ++ +R G Sbjct: 225 EL--VRQGC 231 >gi|156933738|ref|YP_001437654.1| hypothetical protein ESA_01564 [Cronobacter sakazakii ATCC BAA-894] gi|156531992|gb|ABU76818.1| hypothetical protein ESA_01564 [Cronobacter sakazakii ATCC BAA-894] Length = 183 Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats. Identities = 42/178 (23%), Positives = 71/178 (39%), Gaps = 4/178 (2%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 + G I PT++ Y L + A+ R+ I+ P + D+S + ++ VD Sbjct: 1 MRKGGVIVYPTDSGYALGCKLEDKGAMERICRIRDLPDGHNFTLMCRDLSELSTYSYVDN 60 Query: 79 LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAI 137 ++ L K PG T +L L KT RVP L+E P+ Sbjct: 61 VAFRLIKNNTPGNYTFILKGTKEVP-RRLLQEKRKTIGLRVPSNPIALALLEALDEPMLS 119 Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 S G + + + K++ LII GG +T++++ + V +LR G Sbjct: 120 TSLMLPGSEFTESDPDEIKDRLEKQVDLIIHGGYLGQ-QPTTVIDLTDDAPV-VLREG 175 >gi|300770029|ref|ZP_07079908.1| Sua5/YciO/YrdC/YwlC family protein [Sphingobacterium spiritivorum ATCC 33861] gi|300762505|gb|EFK59322.1| Sua5/YciO/YrdC/YwlC family protein [Sphingobacterium spiritivorum ATCC 33861] Length = 191 Score = 160 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 44/193 (22%), Positives = 82/193 (42%), Gaps = 6/193 (3%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 M+ D + KA E L G I PT+T++G+ D+ NP A+ R+ ++K R +I Sbjct: 1 MTPIDREDINKALETLKNGGLILYPTDTIWGIGCDATNPEAVDRIIQLKGRSKEKSMIVL 60 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 + + + + + + P + + PLT+V ++ + A + R+ Sbjct: 61 LHNENQLAGYVNDIPEVAYQLIEYTEHPLTIVYSNAK--NLAANAIAEDGSIGIRIVNHP 118 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK--IGLESTI 180 F +L++ + P+ SAN SG+ S + I + + G G STI Sbjct: 119 FCTQLLQRFRKPIISTSANISGEPSAKTFGD-IDQKIKDGVDYTVQFGQKDRGAGKASTI 177 Query: 181 VNVQCEKKVRILR 193 + + K +R Sbjct: 178 MKLDPSGKFEFIR 190 >gi|167755050|ref|ZP_02427177.1| hypothetical protein CLORAM_00554 [Clostridium ramosum DSM 1402] gi|167705100|gb|EDS19679.1| hypothetical protein CLORAM_00554 [Clostridium ramosum DSM 1402] Length = 201 Score = 160 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 66/207 (31%), Positives = 104/207 (50%), Gaps = 8/207 (3%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M +S+ + NA+ + + + +A PTETV+GL V + A+ LYE+K R + Sbjct: 1 MNTVSV-EKNAIEEVAKLVSDSRVVAFPTETVFGLGVKFGSHQALDALYELKHRDKGKAI 59 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 +S ++K+A VD + L F PG +T++L I TA+L T R+P Sbjct: 60 SMMISKAEDIEKYAYVDETAKKLIAAFMPGMITIILKKRPH--IDDYFTASLDTIGIRIP 117 Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 F L++ G P+ + SAN SG+ S+ + K ++ +IPLI+ G S ST Sbjct: 118 DDPFVLSLLDKTG-PMLVTSANLSGENSLVDDKAVMK-VFHGKIPLIVKGE-SISKEAST 174 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAI 206 IV++ KV ILR G + E + I Sbjct: 175 IVDLSK-GKVEILRLGDISKEQIAEVI 200 >gi|197263827|ref|ZP_03163901.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205354969|ref|YP_002228770.1| ribosome maturation factor [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858644|ref|YP_002245295.1| ribosome maturation factor [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|197242082|gb|EDY24702.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205274750|emb|CAR39807.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206710447|emb|CAR34805.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326630118|gb|EGE36461.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 190 Score = 160 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 48/184 (26%), Positives = 75/184 (40%), Gaps = 8/184 (4%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 ++ A + L+ IA PTE V+G+ D + TA+ RL +K+RP LI + + Sbjct: 9 SIAAAVDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIAASFEQL 68 Query: 71 KKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 K + L+ K WPGP+T V +TT T + RV Sbjct: 69 KPYIDDSILTAAQRKAVFDCWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTNHPLVVA 126 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L YG PL SAN SG ++ + + + P +++G S I + Sbjct: 127 LCNAYGKPLVSTSANLSGLPPCRTIEEV-RAQFGDDFP-VVEGATGGRLNPSEIRDALTG 184 Query: 187 KKVR 190 + R Sbjct: 185 ELFR 188 >gi|227538481|ref|ZP_03968530.1| possible translation factor, Sua5 [Sphingobacterium spiritivorum ATCC 33300] gi|227241667|gb|EEI91682.1| possible translation factor, Sua5 [Sphingobacterium spiritivorum ATCC 33300] Length = 191 Score = 160 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 45/193 (23%), Positives = 83/193 (43%), Gaps = 6/193 (3%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 M+ D + KA E L G I PT+T++G+ D+ NP A+ R+ ++K R +I Sbjct: 1 MTPIDREDINKALETLKNGGLILYPTDTIWGIGCDATNPEAVDRVIQLKGRSKEKSMIVL 60 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 + + + + + + P + + PLT+V ++ + A + R+ Sbjct: 61 LHNENQLAGYVNDIPEVAYQLIEYTEHPLTIVYSNAK--NLAANAIAEDGSIGIRIVNHP 118 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--GLESTI 180 F +L++ + P+ SAN SG+ S + I + + G I G STI Sbjct: 119 FCTQLLQRFRKPIISTSANISGEPSAKTFGD-IDQKIKDGVDYTVQFGQKDIGAGKASTI 177 Query: 181 VNVQCEKKVRILR 193 + + K +R Sbjct: 178 MKLDPSGKFEFIR 190 >gi|78707274|ref|NP_001027444.1| CG33786 [Drosophila melanogaster] gi|17946164|gb|AAL49123.1| RE55868p [Drosophila melanogaster] gi|71911685|gb|AAF57437.2| CG33786 [Drosophila melanogaster] gi|220948934|gb|ACL87010.1| CG33786-PA [synthetic construct] gi|220957748|gb|ACL91417.1| CG33786-PA [synthetic construct] gi|228480314|gb|ACQ41870.1| MIP03842p [Drosophila melanogaster] Length = 248 Score = 160 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 65/199 (32%), Positives = 99/199 (49%), Gaps = 9/199 (4%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 + ++ D AL+ A + L G IA+PT+TVYGLA D+ N TAI++LYEIK R P+ Sbjct: 32 VCAVGDEAALQLARQCLLGGQVIALPTDTVYGLACDANNETAIQQLYEIKGRDEHKPVAI 91 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC- 121 V +I +++ LS L PGPLT+V++ S L+ + K R+P Sbjct: 92 CVHNIDALRRFGQAAHLSDELLTRLLPGPLTIVIERTSQLSNRFLNPSTSK-IGIRIPDF 150 Query: 122 GFTKKLIETYG-HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI----SKIGL 176 F + L + PLA+ SANRS S V S+ ++ + D G + L Sbjct: 151 NFMRDLCAVWQEKPLALTSANRSSAPSSLQVSE--FRSLWPQLGAVFDAGRIGLTEERRL 208 Query: 177 ESTIVNVQCEKKVRILRPG 195 ST++++ I+R G Sbjct: 209 ASTVIDLATPGYYEIVRAG 227 >gi|304310659|ref|YP_003810257.1| Putative translation factor (SUA5) [gamma proteobacterium HdN1] gi|301796392|emb|CBL44600.1| Putative translation factor (SUA5) [gamma proteobacterium HdN1] Length = 211 Score = 160 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 47/206 (22%), Positives = 83/206 (40%), Gaps = 8/206 (3%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 QI + N +++A L G I PT+ Y N +A+ R+ +I++ + Sbjct: 3 QIFHVHSENPQKRLIQQAVNILRDGGVIVYPTDAAYAFGCTVGNKSALERIVQIRQLGSK 62 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 + ++S + +A VD L K PGP T +L + L KT Sbjct: 63 HNFTIACHNLSELATYARVDNQVFRLLKNNTPGPYTFILAATAEVP-RRLMHPKRKTVGL 121 Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P L+E G PL + + + + + I L+IDGG + Sbjct: 122 RIPDNKIALALLEALGEPLMTTTLIMPNESEPLVDPEEILELLSRRIELVIDGGWGETST 181 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETL 202 +T+V++ V ++R G +E + Sbjct: 182 -TTVVDLVDSIPV-LVREGKGSLEKV 205 >gi|292900851|ref|YP_003540220.1| hypothetical protein EAM_3158 [Erwinia amylovora ATCC 49946] gi|291200699|emb|CBJ47832.1| conserved hypothetical protein [Erwinia amylovora ATCC 49946] Length = 188 Score = 160 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 54/185 (29%), Positives = 81/185 (43%), Gaps = 8/185 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 ++L + E L IA PTE V+GL D + A+ RL +K+RP LI +D Sbjct: 6 DSLAQCVEQLAQSKVIAYPTEAVFGLGCDPDSEEAVMRLLALKQRPVEKGLILIAADYQQ 65 Query: 70 VKKHASVDPL-SLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TK 125 + + + L + A++F WPGP+T VL STT T T RV Sbjct: 66 LMPWIADEQLSAEQKARMFSRWPGPVTWVLPARSTT--PGWLTGRFTTLAVRVSDHPDVI 123 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 L +G PL SAN SG + +L + ++ P ++ G S I +V Sbjct: 124 ALCNAFGKPLVSTSANLSGLPPCRHAAEVL-AQFGRDFP-VLKGETGGRLNPSEIRDVLS 181 Query: 186 EKKVR 190 + +R Sbjct: 182 GELIR 186 >gi|307546301|ref|YP_003898780.1| translation factor [Halomonas elongata DSM 2581] gi|307218325|emb|CBV43595.1| K07566 putative translation factor [Halomonas elongata DSM 2581] Length = 207 Score = 160 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 46/208 (22%), Positives = 81/208 (38%), Gaps = 8/208 (3%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 Q I N + +A + G IA PT++ Y L + AI R+ ++ Sbjct: 3 QFFQIHPENPQKRLIDQAVRIIRDGGVIAYPTDSGYALGCHLGDKKAIERIKWLRSLDDK 62 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 + SD+S + +A VD L K PG T +L S L ++ Sbjct: 63 HNFTLVCSDLSEIGTYAKVDNAVFRLLKAHTPGAYTFILQATSEVP-RLLLHPKRRSIGV 121 Query: 118 RVPCGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 RVP + L+ G PL + G+ + + L+IDGG + Sbjct: 122 RVPDHPIPRALLAELGEPLMSVTLIPVGEEQPMTEAEEIRERFGAHLDLVIDGGACHL-E 180 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKR 204 +++++++ E +I+R G +I + Sbjct: 181 PTSVIDLR-ELPPQIVREGRGDIAPFQE 207 >gi|194442465|ref|YP_002042654.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194401128|gb|ACF61350.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 190 Score = 160 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 49/184 (26%), Positives = 76/184 (41%), Gaps = 8/184 (4%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 ++ A + L+ IA PTE V+G+ D + TA+ RL +K+RP LI + + Sbjct: 9 SIAAAVDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIAASFEQL 68 Query: 71 KKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 K + L++ K WPGP+T V +TT T + RV Sbjct: 69 KPYIDDTILTVAQRKAVFDCWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTNHPLVVA 126 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L YG PL SAN SG V+ + + + P +++G S I + Sbjct: 127 LCNAYGKPLVSTSANLSGLPPCRTVEEV-RAQFGDDFP-VVEGATGGRLNPSEIRDALTG 184 Query: 187 KKVR 190 + R Sbjct: 185 ELFR 188 >gi|220909107|ref|YP_002484418.1| Sua5/YciO/YrdC/YwlC family protein [Cyanothece sp. PCC 7425] gi|219865718|gb|ACL46057.1| Sua5/YciO/YrdC/YwlC family protein [Cyanothece sp. PCC 7425] Length = 221 Score = 160 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 53/214 (24%), Positives = 88/214 (41%), Gaps = 12/214 (5%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 +I SI N + + L AG + PT+TVY + D A++R+ +IK Sbjct: 3 KIYSIHPDNPQQRITDQIRDELRAGAVMLYPTDTVYAIGCDLNVKHAVQRVRQIKHLSND 62 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLST-ANLKTAC 116 PL S +S + +A V + L + PGP T +L +T + L+ KT Sbjct: 63 KPLTFLCSSLSNIAHYAYVSDSAYRLMRSLVPGPYTFLLP--ATKLVPRLAQEPKRKTTG 120 Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISI----TNVKHILSSSICKEIPLIIDGGI 171 RVP + L+E+ G P+ +A + L + + LI+D G Sbjct: 121 IRVPDHPVCQSLLESLGSPVISTAARLPEEEQTNESVELGSAELFDRFDRLVDLIVDNGQ 180 Query: 172 SKIGLESTIVNVQCEKKVRILRPGGLEIETLKRA 205 STI+++ V + + G E L++ Sbjct: 181 KTGQQVSTILDLGATPPVIVRKGLGWEALPLEKF 214 >gi|157959867|ref|YP_001499901.1| SUA5/yciO/yrdC domain-containing protein [Shewanella pealeana ATCC 700345] gi|212288224|sp|A8GYH9|RIMN_SHEPA RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|157844867|gb|ABV85366.1| SUA5/yciO/yrdC domain [Shewanella pealeana ATCC 700345] Length = 187 Score = 160 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 49/181 (27%), Positives = 74/181 (40%), Gaps = 7/181 (3%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A E ++ G IA PTE VYGL D N AI +L +IK+RP LI D + + Sbjct: 9 AAELVEQGGVIAYPTEAVYGLGCDPDNDEAINQLLQIKQRPWQKGLILVAGDYQQLLPYI 68 Query: 75 SVDPLSLH---LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIET 130 L+ A+ WPGP T ++ + + L + + RV K L Sbjct: 69 DESQLNAQQLAFAQSKWPGPFTFIMPVKPG--LSKLLSGAFDSIAVRVTAHAGVKALCAA 126 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 P+ SAN SGQ + + I ++ G + STI++ + +R Sbjct: 127 IHKPIVSTSANLSGQEPALS-PLAVKQQFEGIISGLVVGELGSQASPSTIIDARSGTVIR 185 Query: 191 I 191 Sbjct: 186 E 186 >gi|30249687|ref|NP_841757.1| Sua5/YciO/YrdC/YwlC family protein [Nitrosomonas europaea ATCC 19718] gi|30180724|emb|CAD85636.1| SUA5/yciO/yrdC family:Sua5/YciO/YrdC/YwlC protein family [Nitrosomonas europaea ATCC 19718] Length = 210 Score = 160 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 41/192 (21%), Positives = 76/192 (39%), Gaps = 4/192 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +R+A + + G IA PT++ Y L N A+ R+ I+K + D++ Sbjct: 14 TRLIRQAVDIVRKGGVIAYPTDSCYALGCQIGNKEAMDRIRTIRKVDQNHNFTLVCRDLA 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD L K PG T +L L T R+P + L Sbjct: 74 EIATYAKVDNAQYRLLKAATPGSYTFILAATREVP-RRLQHPKRHTIGLRIPDHPVVQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + PL + G N + + +I L++D G + +T++++ E Sbjct: 133 LAELDEPLLSSTLILPGDELPLNDAGEIRQRLEHQIELVMDAGSCGTDM-TTVIDLT-ET 190 Query: 188 KVRILRPGGLEI 199 ++ R G ++ Sbjct: 191 TPKVARSGKGDL 202 >gi|89074055|ref|ZP_01160556.1| putative translation factor [Photobacterium sp. SKA34] gi|89050193|gb|EAR55704.1| putative translation factor [Photobacterium sp. SKA34] Length = 206 Score = 160 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 41/196 (20%), Positives = 79/196 (40%), Gaps = 4/196 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +++A E + G + PT++ Y L N A+ R+ +I++ + D+S Sbjct: 14 TRLIKQAVEIIKNGGVVVYPTDSGYALGCQLENKQALERICQIRRLNEKHNFTLLCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + VD ++ L + PG T + L A KT RVP L Sbjct: 74 ELSLYTRVDNIAFRLLRNNTPGAYTFIFKGTKEVP-RRLMNAKRKTIGIRVPDNAIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL S G + + + + LI+ GG +T+++ + Sbjct: 133 LEALGEPLMSTSLILPGNETTEADPDDIRDKLEHAVDLIMHGGYLGE-QPTTVIDF-SDG 190 Query: 188 KVRILRPGGLEIETLK 203 ++ I+R G ++ + Sbjct: 191 EINIVRVGAGDVTPFE 206 >gi|90581221|ref|ZP_01237019.1| putative translation factor [Vibrio angustum S14] gi|90437592|gb|EAS62785.1| putative translation factor [Vibrio angustum S14] Length = 206 Score = 160 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 42/196 (21%), Positives = 79/196 (40%), Gaps = 4/196 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +++A E + G + PT++ Y L N A+ R+ +I++ + D+S Sbjct: 14 TRLIKQAVEIIKNGGVVVYPTDSGYALGCQLENKQALERICQIRRLNEKHNFTLLCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + VD ++ L + PG T + L A KT RVP L Sbjct: 74 ELSLYTRVDNIAFRLLRNNTPGAYTFIFKGTKEVP-RRLMNAKRKTIGIRVPDNAIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL S G + + + + LI+ GG +T+++ E Sbjct: 133 LEALGEPLMSTSLILPGNETTEADPDEIRDKLEHAVDLIMHGGYLGE-QPTTVIDF-SEG 190 Query: 188 KVRILRPGGLEIETLK 203 ++ I+R G ++ + Sbjct: 191 EINIVRVGAGDVTPFE 206 >gi|312137347|ref|YP_004004684.1| translation factor sua5 [Methanothermus fervidus DSM 2088] gi|311225066|gb|ADP77922.1| translation factor SUA5 [Methanothermus fervidus DSM 2088] Length = 196 Score = 160 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 55/199 (27%), Positives = 95/199 (47%), Gaps = 13/199 (6%) Query: 1 MQIMSITD----SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56 M+I+ + + L K L G I PT+T+YGL ++ + AI+++Y IKKR Sbjct: 1 MKIIKLDPYNPKTKVLNKVRRMLAEGKVIIYPTDTLYGLGANAFDEDAIKKVYSIKKRSF 60 Query: 57 MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 P+ V ++ ++K A ++ PGP T++L+ I + TA K Sbjct: 61 DKPISICVPNMRWIRKVAYLNDKQKEKISKLLPGPYTIILE--KKDIIPDVLTAGKKKVG 118 Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R+P + +L + + P+ SAN SG+ + VK I+ K + L ID G + G Sbjct: 119 IRIPKSKISIELAKEF--PITATSANISGRETPPTVKEIIKQL--KNVDLAIDVGPLR-G 173 Query: 176 LESTIVNVQCEKKVRILRP 194 ST+++ + +I+R Sbjct: 174 EPSTVIDFTTD-PPKIIRG 191 >gi|326774096|ref|ZP_08233378.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces viscosus C505] gi|326636235|gb|EGE37139.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces viscosus C505] Length = 253 Score = 160 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 66/233 (28%), Positives = 100/233 (42%), Gaps = 26/233 (11%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + L+ AC+ L AG + +PT+TVYG+ ++ + A+ RL K R P V+D + Sbjct: 16 PDPLQPACDHLRAGGLVILPTDTVYGIGCNAADAAAVERLLAAKGRGRQMPPPVLVADPA 75 Query: 69 MV-KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + A V + L + FWPG LTL+L+ T T T R+P T Sbjct: 76 DLIGLVAQVPEAAHALMEAFWPGALTLILEADETLTWDLGETGG--TLAVRMPAHELTLN 133 Query: 127 LIETYGHPLAIPSANRSGQISI-------------------TNVKHILSSSICKEIPLII 167 L+ G PLA+ SAN +G + + +E L++ Sbjct: 134 LLRRSG-PLAVTSANPTGAPPATDAASARAAFPGRVRSVDELTADGEAAGADWREDILLL 192 Query: 168 DGGISKIGLESTIVNVQCE--KKVRILRPGGLEIETLKRAISVELEYCVDETS 218 DGG + + STIV + E + RILR G L + L+R V L + Sbjct: 193 DGGATPGPVPSTIVTLAGEHARAPRILRQGVLALADLERVAGVALSERTAGAA 245 >gi|114332006|ref|YP_748228.1| Sua5/YciO/YrdC/YwlC family protein [Nitrosomonas eutropha C91] gi|114309020|gb|ABI60263.1| Sua5/YciO/YrdC/YwlC family protein [Nitrosomonas eutropha C91] Length = 210 Score = 160 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 74/189 (39%), Gaps = 4/189 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +R+A + + G I PT++ Y L N A+ R+ I+K + D++ + Sbjct: 17 IRQAADIVREGGIIVYPTDSCYALGCQIGNKEAMDRIRTIRKVGQDHNFTLVCRDLAEIA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130 +A VD L K PG T +L L T R+P T+ L+ Sbjct: 77 TYAKVDNAQYRLLKATTPGSYTFILTASREVP-RRLQHPKRHTIGLRIPEHPVTQALLAE 135 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 PL + N + + ++ LI+D G + +T++++ E R Sbjct: 136 LNEPLLSSTLILPEDELPLNDAEEIRQRLEHQVELIMDAGSCGTNM-TTVIDLT-EATPR 193 Query: 191 ILRPGGLEI 199 I R G ++ Sbjct: 194 IARLGKGDL 202 >gi|209522642|ref|ZP_03271200.1| Sua5/YciO/YrdC/YwlC family protein [Arthrospira maxima CS-328] gi|209496691|gb|EDZ96988.1| Sua5/YciO/YrdC/YwlC family protein [Arthrospira maxima CS-328] Length = 222 Score = 160 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 47/199 (23%), Positives = 84/199 (42%), Gaps = 13/199 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + L G + PT+TVY + D +A++++ +IK+ PL S +S + Sbjct: 17 IEQIKDALKRGAVMLYPTDTVYAIGCDLTVKSAVQKVRQIKQISNDKPLTFLCSSLSNIA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKKLIE 129 +A V + K PG T VL +T + L + KT RVP ++E Sbjct: 77 DYAIVTDAAYRTIKRLIPGSYTFVLP--ATKLVPKLVMSPKRKTTGIRVPDHPVCLAILE 134 Query: 130 TYGHPLAIPSANRSGQISI---------TNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 + G+P+ SA+ + K L ++ + +I+D G STI Sbjct: 135 SLGNPVISTSAHIKEEDEPSALIKKIPQEYDKVQLFDALENLVDIIVDDGADWDYQVSTI 194 Query: 181 VNVQCEKKVRILRPGGLEI 199 +++ + V + R G E Sbjct: 195 IDLSADDPVLVRRGKGWEA 213 >gi|187928076|ref|YP_001898563.1| Sua5/YciO/YrdC/YwlC family protein [Ralstonia pickettii 12J] gi|187724966|gb|ACD26131.1| Sua5/YciO/YrdC/YwlC family protein [Ralstonia pickettii 12J] Length = 207 Score = 160 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 50/197 (25%), Positives = 85/197 (43%), Gaps = 5/197 (2%) Query: 1 MQIMSITDS-NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 QI T +R+A E + AG +A+PT++ Y LA + +A+ RL ++ + Sbjct: 5 FQIHPTTPQGRLIRQAAEIIRAGGLVALPTDSCYALACHLDDKSAVERLRRVRGIDEKHH 64 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 L D+S + A VD + K PGP +L+ LS + KT RV Sbjct: 65 LTLMCRDLSELATFARVDNKQYRVLKAATPGPFVFLLEATKEVP-RRLSHPSRKTIGLRV 123 Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P L+ G PL + G N + + K++ L+IDGG + + Sbjct: 124 PEHAIPLALMAELGEPLLSATLQLPGDDEPLNEAETIRDRLEKQLELVIDGGPAPA-EPT 182 Query: 179 TIVNVQCEKKVRILRPG 195 T++++ + ++R G Sbjct: 183 TVIDLTSGEP-ELVRQG 198 >gi|197334056|ref|YP_002157319.1| putative yrdC domain protein [Vibrio fischeri MJ11] gi|197315546|gb|ACH64993.1| putative yrdC domain protein [Vibrio fischeri MJ11] Length = 185 Score = 160 bits (406), Expect = 2e-37, Method: Composition-based stats. Identities = 47/183 (25%), Positives = 80/183 (43%), Gaps = 7/183 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L + + L G IA PTE V+G+ D N A+ L ++KKRP LI + I + Sbjct: 4 LNQVVDALKQGNVIAYPTEGVFGVGCDPDNEQALLNLLDVKKRPKEKGLILIAASIEQLL 63 Query: 72 KHASVDPLSLHL---AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127 + ++ L+ K WPGP+T ++ + ++T PL T + RV K + Sbjct: 64 PYIDLEQLTEEQVNTIKASWPGPVTWIVPVKTSTL--PLVTGQFDSIAVRVTAHPQVKAI 121 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +G P+ SAN SG +V + + + +I G + + I + + Sbjct: 122 CNAFGKPITSTSANLSGLEPCRSVAEV-EAQLGDTGVVIFQGEVGNRTQPTEIRDAKTGN 180 Query: 188 KVR 190 +R Sbjct: 181 TLR 183 >gi|238797207|ref|ZP_04640708.1| Ribosomal modification protein RimN [Yersinia mollaretii ATCC 43969] gi|238718844|gb|EEQ10659.1| Ribosomal modification protein RimN [Yersinia mollaretii ATCC 43969] Length = 188 Score = 160 bits (406), Expect = 2e-37, Method: Composition-based stats. Identities = 47/187 (25%), Positives = 75/187 (40%), Gaps = 8/187 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 +S+ L L IA PTE V+GL D + A+ L +K+RP LI ++ Sbjct: 4 NSDVLADVLRALRQEEVIAYPTEAVFGLGCDPDSEKAVNALLTLKQRPWQKGLILIAANY 63 Query: 68 SMVKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 +K + LS WPG +T V+ + T+ T + + RV Sbjct: 64 EQLKPYVDDSSLSDSQRETIFSCWPGAVTWVIP--ARTETPRWLTGSFDSLAVRVSDHPL 121 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 ++L YG PL SAN SG + + +P+++ G + S I + Sbjct: 122 VQQLCLQYGKPLVSTSANLSGHEPCRTDEEV-RIQFGPSLPVLL-GKVGGRLNPSEIRDA 179 Query: 184 QCEKKVR 190 K+ R Sbjct: 180 LTGKQFR 186 >gi|94990488|ref|YP_598588.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pyogenes MGAS10270] gi|94543996|gb|ABF34044.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pyogenes MGAS10270] Length = 206 Score = 160 bits (406), Expect = 2e-37, Method: Composition-based stats. Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 6/188 (3%) Query: 16 CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75 +++G + +PTETVYGL + + A+ +Y++K+RP + +V+D + + + Sbjct: 15 ASIIESGDALVLPTETVYGLFAKALDEKAVNTVYDLKQRPRDKAMNLNVADFNSILAFSK 74 Query: 76 VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHP 134 P L L + F PGPLT++L + + + L T FR+P + P Sbjct: 75 EQPRYLKKLYQAFLPGPLTIIL--KANDQVPYWINSGLSTVGFRLPSHPITTALIQKTGP 132 Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194 L PSAN SG+ S HI+ + D ++ G +STI+++ E+ V ILR Sbjct: 133 LIGPSANLSGKASGRVFDHIMQDFDFQVFGYADDPFLT--GKDSTILDLSGERAV-ILRQ 189 Query: 195 GGLEIETL 202 G + E L Sbjct: 190 GAITKEEL 197 >gi|291408762|ref|XP_002720685.1| PREDICTED: ischemia/reperfusion inducible protein [Oryctolagus cuniculus] Length = 280 Score = 160 bits (406), Expect = 2e-37, Method: Composition-based stats. Identities = 61/195 (31%), Positives = 96/195 (49%), Gaps = 12/195 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ALR A L AG +A+PT+T+YGLA + A+ +Y +K R PL + ++ Sbjct: 68 TEALRAAVAELRAGAVVAVPTDTLYGLACSASCSEALGAVYRLKGRSEAKPLAVCLGRVA 127 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 V ++ V + L K PGP+TLV++ + +++ R+P F + L Sbjct: 128 DVYRYCHVR-VPEQLLKDLLPGPVTLVMER--SEELNKDLNPFTPLVGVRIPAHAFMQDL 184 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE------STIV 181 + +G PLA+ SAN S Q S NV+ + + L+IDGG G ST+V Sbjct: 185 AQMFGGPLALTSANLSSQASSLNVQE--FQDLWPHLSLVIDGGPIGEGQSPECRLGSTVV 242 Query: 182 NVQCEKKVRILRPGG 196 ++ K I+RPG Sbjct: 243 DLSVPGKFGIIRPGC 257 >gi|157148857|ref|YP_001456176.1| putative ribosome maturation factor [Citrobacter koseri ATCC BAA-895] gi|157086062|gb|ABV15740.1| hypothetical protein CKO_04695 [Citrobacter koseri ATCC BAA-895] Length = 200 Score = 160 bits (406), Expect = 2e-37, Method: Composition-based stats. Identities = 48/193 (24%), Positives = 78/193 (40%), Gaps = 8/193 (4%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 ++ + ++A+ A L IA PTE V+G+ D + TA+ RL E+K+RP LI Sbjct: 10 KVNNNLPTDAIAAAVAVLHKECVIAYPTEAVFGVGCDPDSETAVNRLLELKQRPVEKGLI 69 Query: 62 CHVSDISMVKKHASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 ++ +K + WPGP+T V +TT T + R Sbjct: 70 LIAANFEQLKPYIDDSMLTDTQREAIFACWPGPVTFVFPAPATT--PRWLTGRFDSLAVR 127 Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 V L + YG PL SAN +G V+ + + + P +++G Sbjct: 128 VTDHPLVVSLCQAYGKPLVSTSANLTGLPPCRTVEEV-RAQFGADFP-VVEGETGGRLNP 185 Query: 178 STIVNVQCEKKVR 190 S I + + R Sbjct: 186 SEIRDALTGELFR 198 >gi|298530069|ref|ZP_07017471.1| SUA5/yciO/yrdC domain protein [Desulfonatronospira thiodismutans ASO3-1] gi|298509443|gb|EFI33347.1| SUA5/yciO/yrdC domain protein [Desulfonatronospira thiodismutans ASO3-1] Length = 212 Score = 160 bits (406), Expect = 2e-37, Method: Composition-based stats. Identities = 58/214 (27%), Positives = 98/214 (45%), Gaps = 6/214 (2%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 M S ++ +A + + + + PTET++G+ + ++++ E+KKRP P Sbjct: 1 MEFNMSGSIFQAVQIIKSEKILIYPTETLWGMGGTGTSKAVVQKIRELKKRPVHKPFPLI 60 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCG 122 + + ++DP SL LA FWPGP++++ L + P RV P Sbjct: 61 AGTLEQARSFVAMDPESLELAGQFWPGPVSILCRALDM--LAPGVRDEQGMVSIRVTPHQ 118 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID-GGISKIGLESTIV 181 +L G PL SAN SG+ S + L S + +++ ++ + G GL ST+V Sbjct: 119 DAARLCLDAGTPLIATSANISGEKSCAVFEE-LDSELLRKVDMVFEHGHAPAGGLPSTLV 177 Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVD 215 V K+ ILR G + + L+ E Y D Sbjct: 178 RVFGGGKIEILREGRISRQDLESR-GWETVYKTD 210 >gi|318607705|emb|CBY29203.1| sua5 YciO YrdC YwlC family protein [Yersinia enterocolitica subsp. palearctica Y11] Length = 195 Score = 160 bits (406), Expect = 2e-37, Method: Composition-based stats. Identities = 48/192 (25%), Positives = 75/192 (39%), Gaps = 8/192 (4%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 + + AL + L IA PTE V+GL D + A+ L +K+RP LI Sbjct: 6 VSRNENRAALSDVLQALQQEEVIAYPTEAVFGLGCDPDSEKAVNALLALKQRPWQKGLIL 65 Query: 63 HVSDISMVKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 ++ +K + L+ WPGP+T V+ T T + + RV Sbjct: 66 IAANYEQLKPYVDDSALTDSQRETIFSVWPGPVTWVIPTHPET--PRWLTGSFDSLAVRV 123 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 ++L YG PL SAN SGQ + + +P ++ G + S Sbjct: 124 SDHPLVQQLCSQYGKPLVSTSANLSGQEPCRTTEEV-RIQFGSSLP-VLAGLVGGRLNPS 181 Query: 179 TIVNVQCEKKVR 190 I + K+ R Sbjct: 182 EIRDALTGKQFR 193 >gi|159905153|ref|YP_001548815.1| Sua5/YciO/YrdC/YwlC family protein [Methanococcus maripaludis C6] gi|159886646|gb|ABX01583.1| Sua5/YciO/YrdC/YwlC family protein [Methanococcus maripaludis C6] Length = 206 Score = 160 bits (406), Expect = 3e-37, Method: Composition-based stats. Identities = 57/213 (26%), Positives = 108/213 (50%), Gaps = 14/213 (6%) Query: 1 MQIMSITDSN------ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR 54 M+ I++SN + A + + G I T+T+YGL+ ++ + AI ++Y IK+R Sbjct: 1 MKTFEISESNLKNCEKEIETAKKMILNGKVILCGTDTLYGLSTNALDKNAIEKIYSIKER 60 Query: 55 PAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT 114 P+ + + ++ + VD ++ + + F PGP+T++L DI P Sbjct: 61 DPNKPISISLGEKKQIENYVYVDSIAKKIIEKFMPGPITVIL---KKKDIIPDILGKDD- 116 Query: 115 ACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174 R+P + I PL SAN SG+ + ++++ + + I +++ LII+ G SK Sbjct: 117 VGVRIPDNDVIRKI--AIVPLTTTSANISGKTAPSSLEEV-DTVIKEKVDLIINTGPSKY 173 Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAIS 207 ++STIV V K+ ++R G + E + +A+ Sbjct: 174 KVQSTIVKVIG-GKIELIREGKIPFEEILKAVK 205 >gi|327284453|ref|XP_003226952.1| PREDICTED: hypothetical protein LOC100555097 [Anolis carolinensis] Length = 499 Score = 160 bits (406), Expect = 3e-37, Method: Composition-based stats. Identities = 55/190 (28%), Positives = 91/190 (47%), Gaps = 12/190 (6%) Query: 20 DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL 79 G +A+PT+TVYG+A + + A+ LY +K R PL + D+ ++ + V + Sbjct: 91 RGGGLVALPTDTVYGVACLAEDSRALEALYRLKGRDPGKPLAVCLPDLDVLHRFCKV-QV 149 Query: 80 SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIP 138 L + PGP+TLVL+ ++P R+P F ++L PLA+ Sbjct: 150 PEGLLQDLLPGPVTLVLERSEA--LNPDLNPFTPLVGVRIPNHWFARELARICAAPLALT 207 Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGI------SKIGLESTIVNVQCEKKVRIL 192 SAN S + S +V + + L++DGG + L ST+V++ K R++ Sbjct: 208 SANPSHKGSTLDVTE--FQELWPHLSLVVDGGPLGDTHSPESRLGSTVVDLSVPGKFRVI 265 Query: 193 RPGGLEIETL 202 RPG +TL Sbjct: 266 RPGCALSQTL 275 >gi|325297458|ref|YP_004257375.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides salanitronis DSM 18170] gi|324317011|gb|ADY34902.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides salanitronis DSM 18170] Length = 187 Score = 160 bits (406), Expect = 3e-37, Method: Composition-based stats. Identities = 50/190 (26%), Positives = 88/190 (46%), Gaps = 8/190 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++ ACE ++ G I PT+TV+G+ D+ N A++R+YEIK+R ++ V Sbjct: 2 KEEIKNACEVMNKGGVILYPTDTVWGIGCDATNEEAVKRVYEIKRRADSKAMLVLVDSPV 61 Query: 69 MVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKK 126 V + P ++ L + PLT++ D ++ P A + RV F+K+ Sbjct: 62 KVDYYVQDVPSVAWDLIE-LTTKPLTIIYD--GARNLAPNLLAEDGSVGIRVTNEAFSKE 118 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQ 184 L + + SAN SG+ S +S I + I+D + G S+I+ + Sbjct: 119 LCFRFRKAIVSTSANISGEPSPAVFSE-ISEEIKSAVDYIVDFRREETGHPKPSSIIKLG 177 Query: 185 CEKKVRILRP 194 +V+I+R Sbjct: 178 KGGEVKIIRE 187 >gi|281419747|ref|ZP_06250746.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella copri DSM 18205] gi|281406276|gb|EFB36956.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella copri DSM 18205] Length = 190 Score = 160 bits (406), Expect = 3e-37, Method: Composition-based stats. Identities = 49/193 (25%), Positives = 90/193 (46%), Gaps = 8/193 (4%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 +T ++ A E + G I PT+TV+G+ D+ NP A++++YEIKKR LIC + Sbjct: 1 MTVEEDIKHAVECMRKGGVILYPTDTVWGIGCDATNPEAVKKVYEIKKRDDSKALICLID 60 Query: 66 DIS-MVKKHASVDPLSLHLAKLFWP-GPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CG 122 M + +V ++ P P T++LD + + A + R+ Sbjct: 61 SADRMARYFRNVPQVAWDFIDAAMPVKPTTVILD--DASGVANNLVAEDGSLAMRITYEP 118 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--GLESTI 180 F+K+L + P+ SAN SG+ + N + +S I + + + S+I Sbjct: 119 FSKQLCYRFQKPIVSTSANVSGEPAAQNYRD-ISEEILNAVDYVCWSRRQEHKPHQPSSI 177 Query: 181 VNVQCEKKVRILR 193 V + + +V+++R Sbjct: 178 VKIAKDGEVKVIR 190 >gi|150403108|ref|YP_001330402.1| Sua5/YciO/YrdC/YwlC family protein [Methanococcus maripaludis C7] gi|150034138|gb|ABR66251.1| Sua5/YciO/YrdC/YwlC family protein [Methanococcus maripaludis C7] Length = 206 Score = 160 bits (406), Expect = 3e-37, Method: Composition-based stats. Identities = 58/213 (27%), Positives = 105/213 (49%), Gaps = 14/213 (6%) Query: 1 MQIMSITDSN------ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR 54 M+ I++SN + A + + G I T+T+YGL+ ++ + AI ++Y IK+R Sbjct: 1 MKTFEISESNLKNCNDEIESARKMILDGKIILCGTDTLYGLSTNALDKKAIEKIYSIKER 60 Query: 55 PAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT 114 P+ + + ++ + VD + + + F PGP+T++L DI P Sbjct: 61 DPNKPISISLGEKDQIENYVYVDKPAKKIIEKFMPGPITVIL---KKKDIIPDILGKND- 116 Query: 115 ACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174 R+P + I PL SAN SG+ + +++ + S I +++ LIID G K Sbjct: 117 VGVRIPDNDVIRKI--AIVPLTTTSANISGKTAPASLEEV-DSIIKEKVDLIIDTGPCKY 173 Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAIS 207 ++STIV V + K+ ++R G + E + R + Sbjct: 174 KVQSTIVKVI-DGKIELIREGKIPFEDILRTVK 205 >gi|29655286|ref|NP_820978.1| sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii RSA 493] gi|153206968|ref|ZP_01945786.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii 'MSU Goat Q177'] gi|165918271|ref|ZP_02218357.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii RSA 334] gi|212219510|ref|YP_002306297.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii CbuK_Q154] gi|81628337|sp|Q83AA2|RIMN_COXBU RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|29542558|gb|AAO91492.1| sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii RSA 493] gi|120577041|gb|EAX33665.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii 'MSU Goat Q177'] gi|165918131|gb|EDR36735.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii RSA 334] gi|212013772|gb|ACJ21152.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii CbuK_Q154] Length = 186 Score = 160 bits (406), Expect = 3e-37, Method: Composition-based stats. Identities = 53/185 (28%), Positives = 80/185 (43%), Gaps = 5/185 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ A + L G IA PTE VYGL D N A+ +L IKKR I S+ Sbjct: 5 TQSINDAVKCLRQGGVIAYPTEAVYGLGCDPFNHDAVAQLLTIKKRSIKKGFILIASEWK 64 Query: 69 MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK- 126 V+ +DP +L WPGP T ++ + T T RV K Sbjct: 65 QVEPLTEPIDPKALARVFDTWPGPFTWTFP--ASKEAPHWITGQHSTIAIRVTAHPLAKL 122 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L + + PL SAN+ G+ I +VK IL +I I++G + + I + Sbjct: 123 LCQRFAGPLISSSANQEGEPPIRDVK-ILRLVFGNKIDKILEGPLGPTHRPTPIRDAITG 181 Query: 187 KKVRI 191 + +R+ Sbjct: 182 EILRL 186 >gi|319901221|ref|YP_004160949.1| translation factor SUA5 [Bacteroides helcogenes P 36-108] gi|319416252|gb|ADV43363.1| translation factor SUA5 [Bacteroides helcogenes P 36-108] Length = 204 Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats. Identities = 49/198 (24%), Positives = 81/198 (40%), Gaps = 10/198 (5%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICH 63 + L++ L+ G I PT+T+Y + + AI R+ ++K P N L Sbjct: 8 KNNNPADLQQIINLLNDGGIIIYPTDTMYAIGCHALKERAIERICQLKDIDPKKNNLSII 67 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 D+S + ++A VD + L K PG T +L+ T P N K R+P Sbjct: 68 CYDLSSISEYAKVDNNTFKLMKRNLPGAFTFILN---GTTRLPKIFRNRKEVGIRMPDSS 124 Query: 123 FTKKLIETYGHPLAIPSAN--RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-ST 179 +++ P+ + S I +++ + LIIDGGI G E ST Sbjct: 125 IIREIARLLDAPIMTTTLPYDDSEDIEYATDPELINEKFGNTVDLIIDGGIG--GTEGST 182 Query: 180 IVNVQCEKKVRILRPGGL 197 IV+ + + + G Sbjct: 183 IVDCTNGETEIVRQGKGW 200 >gi|168239765|ref|ZP_02664823.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194734742|ref|YP_002116346.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|204931408|ref|ZP_03222077.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|194710244|gb|ACF89465.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197287578|gb|EDY26970.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204319836|gb|EDZ05046.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 190 Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats. Identities = 49/184 (26%), Positives = 75/184 (40%), Gaps = 8/184 (4%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 ++ A + L+ IA PTE V+G+ D + TA+ RL +K+RP LI + + Sbjct: 9 SIVAAVDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIAASFEQL 68 Query: 71 KKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 K + L+ K WPGP+T V +TT T + RV Sbjct: 69 KPYIDDSILTAAQRKAVFDCWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTNHPLVVA 126 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L YG PL SAN SG V+ + + + P +++G S I + Sbjct: 127 LCNAYGKPLVSTSANLSGLPPCRTVEEV-RAQFGDDFP-VVEGATGGRLNPSEIRDALTG 184 Query: 187 KKVR 190 + R Sbjct: 185 ELFR 188 >gi|56415322|ref|YP_152397.1| ribosome maturation factor [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197364252|ref|YP_002143889.1| ribosome maturation factor [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|81360772|sp|Q5PIS8|RIMN_SALPA RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|56129579|gb|AAV79085.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095729|emb|CAR61299.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 190 Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats. Identities = 48/184 (26%), Positives = 74/184 (40%), Gaps = 8/184 (4%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 ++ + L+ IA PTE V+G+ D + TA+ RL +K+RP LI + + Sbjct: 9 SIAAVVDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIAASFEQL 68 Query: 71 KKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 K + L+ K WPGP+T V +TT T + RV Sbjct: 69 KPYIDDSILTAAQRKAVFDCWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTNHPLVVA 126 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L YG PL SAN SG V+ + + + P +++G S I + Sbjct: 127 LCNAYGKPLVSTSANLSGLPPCRTVEEV-RAQFGDDFP-VVEGATGGRLKPSEIRDALTG 184 Query: 187 KKVR 190 + R Sbjct: 185 ELFR 188 >gi|256390409|ref|YP_003111973.1| Sua5/YciO/YrdC/YwlC family protein [Catenulispora acidiphila DSM 44928] gi|256356635|gb|ACU70132.1| Sua5/YciO/YrdC/YwlC family protein [Catenulispora acidiphila DSM 44928] Length = 216 Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats. Identities = 53/208 (25%), Positives = 85/208 (40%), Gaps = 10/208 (4%) Query: 4 MSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 TD LR+A + G + +PT+T+YG+ D+ A+R L E K R P Sbjct: 5 FDCTDPEQRKTGLREAASAVRRGELVVLPTDTLYGIGADAFTNWAVRALLEAKGRGPAMP 64 Query: 60 LICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 V + + + + + L FWPG LT+V T T T R Sbjct: 65 SPVLVPSPATLHGLVAGMPSVGWELVDAFWPGGLTIVAMHQPTLTWDLGET--RGTVAVR 122 Query: 119 VPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG-ISKIGLE 177 +P + T P+A+ SAN++G + + + + +D G + G Sbjct: 123 MPLHPVAIELLTETGPMAVSSANKTGMAAAQTAVDA-QDQLGDAVSVYLDAGKVGGEGGA 181 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRA 205 S+IV+V V +LR G L + L+ Sbjct: 182 SSIVDVTGTAPV-LLREGALTFDQLREV 208 >gi|15676348|ref|NP_273484.1| hypothetical protein NMB0436 [Neisseria meningitidis MC58] gi|7225661|gb|AAF40874.1| conserved hypothetical protein [Neisseria meningitidis MC58] Length = 213 Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats. Identities = 41/189 (21%), Positives = 76/189 (40%), Gaps = 5/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E ++ G + PT++ Y L + A+ R+ I+K + L +D+S Sbjct: 21 ERLIKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLS 80 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD + K PGP T +L L KT R+P + L Sbjct: 81 ELGTYAKVDNVQFRQLKAATPGPYTFILQATKDVPARTL-HPKRKTIGLRIPDNAIAQAL 139 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + + + + + L+IDGG +T+V++ Sbjct: 140 LGELGEPLLSCTLMLPEDGEPLTDPYEIRERLEHAVDLVIDGGWCGT-EPTTVVDMTDGT 198 Query: 188 KVRILRPGG 196 ++ +R G Sbjct: 199 EL--VRQGC 205 >gi|254491166|ref|ZP_05104347.1| Sua5/YciO/YrdC/YwlC family protein [Methylophaga thiooxidans DMS010] gi|224463679|gb|EEF79947.1| Sua5/YciO/YrdC/YwlC family protein [Methylophaga thiooxydans DMS010] Length = 188 Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats. Identities = 54/181 (29%), Positives = 84/181 (46%), Gaps = 6/181 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 LR+A + L+ G IA PTE VYG+ D + A+ L EIK+RP LI +D + ++ Sbjct: 12 LRQAVKTLNLGGTIAYPTEAVYGVGCDPWDEEAVLTLLEIKQRPWTKGLILIAADFNQLQ 71 Query: 72 KHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 V L + WPGP+T +L + +D+ T T RV T++L E Sbjct: 72 DFIEPVSAAMLEQLQQTWPGPVTWLLP--ARSDVPGYLTGMHDTIAVRVTAHPLTRQLCE 129 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 +G + SAN +G NV H + + I ++ G + S I + Q + + Sbjct: 130 AFGGAIVSTSANITGLKPAMNV-HQVRWQL-PAIDYVLPGALGGADKPSQIRDGQTGETL 187 Query: 190 R 190 R Sbjct: 188 R 188 >gi|59713143|ref|YP_205919.1| ribosome maturation factor [Vibrio fischeri ES114] gi|75353187|sp|Q5E1R5|RIMN_VIBF1 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|59481244|gb|AAW87031.1| predicted ribosome maturation factor [Vibrio fischeri ES114] Length = 185 Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats. Identities = 47/183 (25%), Positives = 80/183 (43%), Gaps = 7/183 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L + + L G IA PTE V+G+ D N A+ L ++KKRP LI + I + Sbjct: 4 LNQVVDALKQGNVIAYPTEGVFGVGCDPDNEQALLNLLDVKKRPKEKGLILIAASIEQLL 63 Query: 72 KHASVDPLSLHL---AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127 + ++ L+ K WPGP+T ++ + ++T PL T + RV K + Sbjct: 64 PYIDLEQLTEEQVNTIKASWPGPVTWIVPVKTSTL--PLVTGQFDSIAVRVTAHPQVKAI 121 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +G P+ SAN SG +V + + + +I G + + I + + Sbjct: 122 CNAFGKPITSTSANLSGLEPCRSVTEV-EAQLGDTGVVIFQGEVGNRTQPTEIRDAKTGN 180 Query: 188 KVR 190 +R Sbjct: 181 TLR 183 >gi|288803651|ref|ZP_06409081.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella melaninogenica D18] gi|302345636|ref|YP_003813989.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella melaninogenica ATCC 25845] gi|288333891|gb|EFC72336.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella melaninogenica D18] gi|302149344|gb|ADK95606.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella melaninogenica ATCC 25845] Length = 189 Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats. Identities = 43/192 (22%), Positives = 91/192 (47%), Gaps = 8/192 (4%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + + ++KA E + G I PT+TV+G+ D+ N A+ ++Y +K+R LIC V Sbjct: 1 MKQEDDIKKAIEVMRKGGIILYPTDTVWGIGCDATNAEAVAKVYALKRRDDSKALICLVD 60 Query: 66 DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GF 123 + ++++ +V ++ L + P TL+LD ++ P A + R+ F Sbjct: 61 SDNRLQRYVRNVPDVAWQLIEAV-EKPTTLILD--GAVNLAPNLIAEDGSIGIRITKEPF 117 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--GLESTIV 181 + +L + + SAN SG+ + N + I + + + + + S+I+ Sbjct: 118 SHELCYRFQKAIVSTSANVSGEPAAQNYRDISQEILDG-VDYVCESRRQEHKPHTPSSII 176 Query: 182 NVQCEKKVRILR 193 + + +V+++R Sbjct: 177 KLAADGEVKVIR 188 >gi|89891475|ref|ZP_01202980.1| translation factor, Sua5/YciO/YrdC/YwlC family [Flavobacteria bacterium BBFL7] gi|89516249|gb|EAS18911.1| translation factor, Sua5/YciO/YrdC/YwlC family [Flavobacteria bacterium BBFL7] Length = 205 Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats. Identities = 47/207 (22%), Positives = 89/207 (42%), Gaps = 13/207 (6%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 Q++ I + N L++ + + G + PT+TVYGL D + A+ ++ +I+ Sbjct: 3 QLVRIYEDNPSPKELQRIAKAMRDGALVIYPTDTVYGLGCDINHKGALEKVAKIRGVKLE 62 Query: 58 NP-LICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115 +S + ++ S +D + L K PGP T +L + P KT Sbjct: 63 KANFSFICESLSNLSEYVSQIDTATFKLLKRNLPGPYTFILPGNNNL---PSVFKKKKTV 119 Query: 116 CFRVPCG-FTKKLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISK 173 RVP L++ G+P+ S + I T ++ + +IDGG Sbjct: 120 GIRVPDNSIAIGLVQALGNPIISTSIKDEDEVIEYTTDPSLIVEKWDNLVDYVIDGGYGD 179 Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIE 200 + ST++++ ++ V ++R G +E Sbjct: 180 -NIASTVIDLTGDEPV-LVREGKGSVE 204 >gi|123444060|ref|YP_001008030.1| putative ribosome maturation factor [Yersinia enterocolitica subsp. enterocolitica 8081] gi|212288235|sp|A1JRY6|RIMN_YERE8 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|122091021|emb|CAL13904.1| conserved hypothetical protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 190 Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats. Identities = 48/187 (25%), Positives = 75/187 (40%), Gaps = 8/187 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 + AL + L IA PTE V+GL D + A+ L +K+RP LI ++ Sbjct: 6 NRAALSDVLQALQQEEVIAYPTEAVFGLGCDPDSEKAVNALLALKQRPWQKGLILIAANY 65 Query: 68 SMVKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 +K + L+ WPGP+T V+ T T + + RV Sbjct: 66 EQLKPYVDDSALTDSQRETIFSVWPGPVTWVIPTHPET--PRWLTGSFDSLAVRVSDHPL 123 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 ++L YG PL SAN SGQ ++ + +P ++ G + S I + Sbjct: 124 VQQLCSQYGKPLVSTSANLSGQEPCRTIEEV-RIQFGSSLP-VLAGLVGGRLNPSEIRDA 181 Query: 184 QCEKKVR 190 K+ R Sbjct: 182 LTGKQFR 188 >gi|284992526|ref|YP_003411080.1| Sua5/YciO/YrdC/YwlC family protein [Geodermatophilus obscurus DSM 43160] gi|284065771|gb|ADB76709.1| Sua5/YciO/YrdC/YwlC family protein [Geodermatophilus obscurus DSM 43160] Length = 224 Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats. Identities = 55/194 (28%), Positives = 95/194 (48%), Gaps = 5/194 (2%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-VD 77 + G + +PT+TVYG+A D+ P+A+ L K R P+ + + S + + V Sbjct: 35 IGNGELVLMPTDTVYGVAADAFTPSAVAALLAAKNRGRTMPVPVLIGEASTLVGLVTVVP 94 Query: 78 PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAI 137 P++ LA+ FWPG LTLVL+ S+ + T R+P + + PLA+ Sbjct: 95 PVATALAEAFWPGGLTLVLEHASS--LAWDLGDAEGTVAVRLPDDEVARDLLRRTGPLAV 152 Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197 SANRSG+ + T + + + +++DGG STIV+ R+LR G + Sbjct: 153 SSANRSGRPAATTADEAV-AQLGVHAAVVLDGGPRAGSAASTIVDCTVPAP-RVLRVGAI 210 Query: 198 EIETLKRAISVELE 211 ++ L+ + ++ Sbjct: 211 PVDRLREVVPGIVD 224 >gi|308388638|gb|ADO30958.1| hypothetical protein NMBB_0480 [Neisseria meningitidis alpha710] gi|325130804|gb|EGC53538.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis OX99.30304] gi|325137003|gb|EGC59600.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis M0579] gi|325202753|gb|ADY98207.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis M01-240149] gi|325208749|gb|ADZ04201.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis NZ-05/33] Length = 206 Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats. Identities = 41/189 (21%), Positives = 76/189 (40%), Gaps = 5/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E ++ G + PT++ Y L + A+ R+ I+K + L +D+S Sbjct: 14 ERLIKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD + K PGP T +L L KT R+P + L Sbjct: 74 ELGTYAKVDNVQFRQLKAATPGPYTFILQATKDVPARTL-HPKRKTIGLRIPDNAIAQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + + + + + L+IDGG +T+V++ Sbjct: 133 LGELGEPLLSCTLMLPEDGEPLTDPYEIRERLEHAVDLVIDGGWCGT-EPTTVVDMTDGT 191 Query: 188 KVRILRPGG 196 ++ +R G Sbjct: 192 EL--VRQGC 198 >gi|255318610|ref|ZP_05359841.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter radioresistens SK82] gi|262379163|ref|ZP_06072319.1| yrdC domain-containing protein [Acinetobacter radioresistens SH164] gi|255304292|gb|EET83478.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter radioresistens SK82] gi|262298620|gb|EEY86533.1| yrdC domain-containing protein [Acinetobacter radioresistens SH164] Length = 205 Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats. Identities = 51/210 (24%), Positives = 85/210 (40%), Gaps = 12/210 (5%) Query: 1 MQIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56 M + + N + +A E + AG + PT+ Y + N A+ R+ +I+ Sbjct: 1 MLHLRVHPENPQPRLITQAVERIRAGDVVVYPTDAAYAIGCQIGNKNAMERIAQIRGLGP 60 Query: 57 MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 + SD+S + +A VD L K P T +L S L KT Sbjct: 61 KHQYAIMCSDLSDIATYAKVDNAMYRLLKANTPAITTFILPATSEVP-RRLMHPKRKTIG 119 Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R+P + L++ G PL + GQ + + + + K I + IDGG G Sbjct: 120 LRIPSNPICQMLLQELGEPLLTSTLILPGQEDPLDDPYEIEQQLGKRIDVFIDGG---FG 176 Query: 176 LEST--IVNVQCEKKVRILRPGGLEIETLK 203 + ST IV++ E I+R G ++ + Sbjct: 177 MLSTTSIVDLSGENP-EIIRYGEGDVSAFE 205 >gi|170697613|ref|ZP_02888702.1| SUA5 domain protein [Burkholderia ambifaria IOP40-10] gi|170137500|gb|EDT05739.1| SUA5 domain protein [Burkholderia ambifaria IOP40-10] Length = 241 Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats. Identities = 52/231 (22%), Positives = 94/231 (40%), Gaps = 21/231 (9%) Query: 108 STANLKTACFRVPCGFTKKLIETY-------GHPLAIPSANRSGQISITNVKHILSSSIC 160 S+ + R P + + +A PSANR G +S T +H+ Sbjct: 8 SSGGQDSVGLRCPSHPVAQALLAAFSARRGGHGGVAAPSANRFGHVSPTTAQHVRDEF-- 65 Query: 161 KEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYC-VDETST 219 + ++DGG S++G+ESTI+++ +LRPG + + + + + Sbjct: 66 GDTVHVLDGGASEVGIESTILDLSRGFPA-LLRPGHVTPRQIADVLGRAPRLPDGGDATA 124 Query: 220 PQSPGMLKSHYAPRSQV----------RLRAIHVNPREALIRFGNVPIKNIENAIISLNL 269 P++ G LK+HYAPR+ + L A + + A + Sbjct: 125 PRASGTLKAHYAPRTPLALMPFDALEPLLAAAQTDGERVALVARASRAGRWAQADGVHFV 184 Query: 270 SKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + + A +L+ ++ D + + I +P IA+N+RL RAAA Sbjct: 185 AAPEDPQAYARDLYGMLRALDRAQVARILVEKLPETVEWIAVNDRLGRAAA 235 >gi|168234459|ref|ZP_02659517.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194469757|ref|ZP_03075741.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194456121|gb|EDX44960.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205331622|gb|EDZ18386.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 190 Score = 160 bits (405), Expect = 4e-37, Method: Composition-based stats. Identities = 49/184 (26%), Positives = 75/184 (40%), Gaps = 8/184 (4%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 ++ A + L+ IA PTE V+G+ D + TA+ RL +K+RP LI + + Sbjct: 9 SIAAAVDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIAASFEQL 68 Query: 71 KKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126 K + L+ K WPGP+T V +TT T + RV Sbjct: 69 KPYIDDSILTAAQRKAVFDCWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTKHPLVVA 126 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L YG PL SAN SG V+ + + + P +++G S I + Sbjct: 127 LCNAYGKPLVSTSANLSGLPPCRTVEEV-RAQFGDDFP-VVEGATGGRLNPSEIRDALTG 184 Query: 187 KKVR 190 + R Sbjct: 185 ELFR 188 >gi|325963838|ref|YP_004241744.1| translation factor SUA5 [Arthrobacter phenanthrenivorans Sphe3] gi|323469925|gb|ADX73610.1| translation factor SUA5 [Arthrobacter phenanthrenivorans Sphe3] Length = 281 Score = 160 bits (405), Expect = 4e-37, Method: Composition-based stats. Identities = 55/219 (25%), Positives = 95/219 (43%), Gaps = 13/219 (5%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + L A + + PT+TVYG+A D+ +P A+ L K R P + I+ Sbjct: 14 AKGLEHAQRAISEKKCVVFPTDTVYGIAADAFSPQAVTMLLVSKGRSRTMPPPVLIPRIN 73 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 + A V + LA+ FWPG LTL+L + D T T R+P + Sbjct: 74 ALDGLATDVSADARKLAEAFWPGGLTLILHAQPSLDWDLGETKG--TVALRMPDDEIAQE 131 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG----ISKIGLESTIVNV 183 + T PLA+ SANR+GQ + + + ++GG ++ + STIV+ Sbjct: 132 LLTLTGPLAVSSANRTGQAPGQTAAAA-REQLADSVEVYLEGGFRPREGELAVPSTIVDA 190 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQS 222 ++R++R G + ++ L+ + + P + Sbjct: 191 TG-PRLRVVRNGAVSLDQLRE----HVPDVLGLGEIPIA 224 >gi|59801858|ref|YP_208570.1| hypothetical protein NGO1520 [Neisseria gonorrhoeae FA 1090] gi|194099331|ref|YP_002002431.1| hypothetical protein NGK_1806 [Neisseria gonorrhoeae NCCP11945] gi|254494302|ref|ZP_05107473.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|268595399|ref|ZP_06129566.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268599438|ref|ZP_06133605.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268601955|ref|ZP_06136122.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|268604284|ref|ZP_06138451.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268682743|ref|ZP_06149605.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268684847|ref|ZP_06151709.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|268687170|ref|ZP_06154032.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] gi|291043170|ref|ZP_06568893.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|293398503|ref|ZP_06642681.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria gonorrhoeae F62] gi|59718753|gb|AAW90158.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090] gi|193934621|gb|ACF30445.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945] gi|226513342|gb|EEH62687.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|268548788|gb|EEZ44206.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268583569|gb|EEZ48245.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268586086|gb|EEZ50762.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|268588415|gb|EEZ53091.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268623027|gb|EEZ55427.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268625131|gb|EEZ57531.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|268627454|gb|EEZ59854.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] gi|291012776|gb|EFE04759.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|291610974|gb|EFF40071.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria gonorrhoeae F62] gi|317164837|gb|ADV08378.1| hypothetical protein NGTW08_1416 [Neisseria gonorrhoeae TCDC-NG08107] Length = 234 Score = 160 bits (405), Expect = 4e-37, Method: Composition-based stats. Identities = 40/188 (21%), Positives = 77/188 (40%), Gaps = 5/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E ++ G + PT++ Y L + A+ R+ I+K + L +D+S Sbjct: 42 ERLIKQAVEIINQGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLS 101 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A +D + K PGP T +L L KT R+P + L Sbjct: 102 ELGTYAKIDNVQFRQLKAATPGPYTFILQATKDAPARAL-HPKRKTIGLRIPDNAVAQAL 160 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL + + + + + L+IDGG +T++++ Sbjct: 161 LEELGGPLLSCTLMLPEDGEPLTDPYEIRERLEHAVDLVIDGGWCGTD-PTTVIDMTDGT 219 Query: 188 KVRILRPG 195 ++ +R G Sbjct: 220 EL--VRRG 225 >gi|326332909|ref|ZP_08199166.1| Sua5/YciO/YrdC/YwlC family protein [Nocardioidaceae bacterium Broad-1] gi|325949267|gb|EGD41350.1| Sua5/YciO/YrdC/YwlC family protein [Nocardioidaceae bacterium Broad-1] Length = 242 Score = 160 bits (405), Expect = 4e-37, Method: Composition-based stats. Identities = 53/187 (28%), Positives = 88/187 (47%), Gaps = 5/187 (2%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLS 80 G + +PT+TVYG+A D+ + A+ L K R P +S+++ + A + + Sbjct: 27 GELVIVPTDTVYGVAADAFDKGAVAGLLAAKGRGRAMPPPVLISNVATLDALATRIPDWA 86 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSA 140 L + FWPG LT+V + +T R+P + I PLA SA Sbjct: 87 RTLVEEFWPGALTVVFHQQPSLQW--DLGEARQTVAVRIPDSDILRRIIDRVGPLATSSA 144 Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200 NR+ + TN + K + IIDGG S +G STIV+ ++ ++LR G + I+ Sbjct: 145 NRTTMPAATNADQA-DEMLGKMVRAIIDGGESPVGEASTIVSATGDEP-KVLREGAISID 202 Query: 201 TLKRAIS 207 + ++ Sbjct: 203 RINELLA 209 >gi|212213462|ref|YP_002304398.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii CbuG_Q212] gi|212011872|gb|ACJ19253.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii CbuG_Q212] Length = 186 Score = 160 bits (405), Expect = 4e-37, Method: Composition-based stats. Identities = 53/185 (28%), Positives = 80/185 (43%), Gaps = 5/185 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ A + L G IA PTE VYGL D N A+ +L IKKR I S+ Sbjct: 5 TQSINDAVKCLRQGGVIAYPTEAVYGLGCDPFNHDAVAQLLTIKKRSIKKGFILIASEWK 64 Query: 69 MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK- 126 V+ +DP +L WPGP T ++ + T T RV K Sbjct: 65 QVEPLTEPIDPKALARVFDTWPGPFTWTFP--ASKEAPHWITGQHSTIAIRVTAHPLAKL 122 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L + + PL SAN+ G+ I +VK IL +I I++G + + I + Sbjct: 123 LCQRFAGPLISSSANQEGEPPIRDVK-ILRLVFGNKIDKILEGSLGPTHRPTPIRDAITG 181 Query: 187 KKVRI 191 + +R+ Sbjct: 182 EILRL 186 >gi|194289302|ref|YP_002005209.1| hypothetical protein RALTA_A1178 [Cupriavidus taiwanensis LMG 19424] gi|193223137|emb|CAQ69142.1| conserved hypothetical protein [Cupriavidus taiwanensis LMG 19424] Length = 207 Score = 159 bits (404), Expect = 4e-37, Method: Composition-based stats. Identities = 46/188 (24%), Positives = 81/188 (43%), Gaps = 4/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S L++A + L G +A+PT++ Y LA + A+ RL ++ + L D+S Sbjct: 14 SRLLKQAAQILQKGGLVALPTDSSYALACRLDDKAAVERLRRLRGIDDRHHLTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + A VD K PGP +L+ LS KT RVP L Sbjct: 74 ELGNFARVDNRQYRWLKGATPGPYVFILEATKEVP-RRLSHPARKTIGVRVPEHAIPLAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + G + N + + + K++ L++DGG + +T++++ + Sbjct: 133 LGETGEPLISATLQLPGDEAPLNDPAQIRARLEKQLDLVVDGGPAPA-QPTTVIDLTGGE 191 Query: 188 KVRILRPG 195 ++R G Sbjct: 192 P-ELVRAG 198 >gi|53729058|ref|ZP_00134151.2| COG0009: Putative translation factor (SUA5) [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208629|ref|YP_001053854.1| hypothetical protein APL_1161 [Actinobacillus pleuropneumoniae L20] gi|165976587|ref|YP_001652180.1| putative translation factor [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190150488|ref|YP_001969013.1| hypothetical protein APP7_1219 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303250090|ref|ZP_07336292.1| putative translation factor [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303253263|ref|ZP_07339412.1| putative translation factor [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307246076|ref|ZP_07528158.1| hypothetical protein appser1_12790 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307248184|ref|ZP_07530212.1| hypothetical protein appser2_11650 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307252800|ref|ZP_07534690.1| hypothetical protein appser6_13130 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307255058|ref|ZP_07536876.1| hypothetical protein appser9_12920 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307257216|ref|ZP_07538987.1| hypothetical protein appser10_12150 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307259494|ref|ZP_07541219.1| hypothetical protein appser11_12910 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307261644|ref|ZP_07543311.1| hypothetical protein appser12_12040 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307263832|ref|ZP_07545437.1| hypothetical protein appser13_12420 [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|126097421|gb|ABN74249.1| hypothetical protein APL_1161 [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165876688|gb|ABY69736.1| putative translation factor [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189915619|gb|ACE61871.1| hypothetical protein APP7_1219 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302647945|gb|EFL78152.1| putative translation factor [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302651153|gb|EFL81307.1| putative translation factor [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306853011|gb|EFM85234.1| hypothetical protein appser1_12790 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306855361|gb|EFM87536.1| hypothetical protein appser2_11650 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306859699|gb|EFM91722.1| hypothetical protein appser6_13130 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306861931|gb|EFM93907.1| hypothetical protein appser9_12920 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306864258|gb|EFM96170.1| hypothetical protein appser10_12150 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306866430|gb|EFM98293.1| hypothetical protein appser11_12910 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306868636|gb|EFN00446.1| hypothetical protein appser12_12040 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306870821|gb|EFN02560.1| hypothetical protein appser13_12420 [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 205 Score = 159 bits (404), Expect = 4e-37, Method: Composition-based stats. Identities = 52/192 (27%), Positives = 77/192 (40%), Gaps = 5/192 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A E + G I PT++ Y L A+ R+ I+K P + SD+S Sbjct: 14 ARLINQAVEIIKNGGVIIYPTDSGYALGCAIGEKHAMDRIVAIRKLPENHNFTLVCSDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A V S L K P P T +L +T D+ KT RVP L Sbjct: 74 ELSTYALVTNQSYRLIKNNTPNPYTFILP--ATKDVPRRLMTKRKTIGIRVPDNAIALAL 131 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I G P+ S + + + + LII GG +G E T V E+ Sbjct: 132 IAALGEPILSCSLMLPDTEITESDPDEIREHLEHRVDLIIHGGY--LGQEPTTVIDLTEE 189 Query: 188 KVRILRPGGLEI 199 RI+R G +I Sbjct: 190 SPRIIREGSGDI 201 >gi|325335186|gb|ADZ11460.1| Sua5A [Riemerella anatipestifer RA-GD] Length = 466 Score = 159 bits (404), Expect = 4e-37, Method: Composition-based stats. Identities = 51/195 (26%), Positives = 82/195 (42%), Gaps = 9/195 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP-LICHVSDI 67 N +++ + LD G I P++TVY L D N A+ +L +KK +D+ Sbjct: 277 ENLIKEVIKTLDNGGLIIYPSDTVYALGCDINNIKAMEKLAALKKIKLEKAHFSIICNDL 336 Query: 68 SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126 S + +D L K PG T +L+ PL+ KT RVP + Sbjct: 337 SHLSSFTKPIDNSVFRLLKSHIPGAFTFILEANKNL---PLAYKGHKTVGIRVPDHPIPQ 393 Query: 127 LI-ETYGHPLAIPSANRSGQIS-ITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 LI E G P+A S +I + +++ + ++ID G + STIV++ Sbjct: 394 LIVEKLGRPIASTSIKDDDEIIEYSTDPELIAEKYDHLVDIVIDSGYGD-NVASTIVDLT 452 Query: 185 CEKKVRILRPGGLEI 199 I+R G E+ Sbjct: 453 S-GVAEIIRQGKGEL 466 >gi|291619138|ref|YP_003521880.1| YrdC [Pantoea ananatis LMG 20103] gi|291154168|gb|ADD78752.1| YrdC [Pantoea ananatis LMG 20103] Length = 190 Score = 159 bits (404), Expect = 4e-37, Method: Composition-based stats. Identities = 48/186 (25%), Positives = 71/186 (38%), Gaps = 8/186 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S +L+ L IA PTE V+GL D N +A+ L +K+RP LI +D Sbjct: 7 SGSLQDCVNHLKQHAVIAYPTEAVFGLGCDPDNESAVMALLALKRRPVEKGLILIAADYG 66 Query: 69 MVKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-T 124 + + S + WPGP+T V+ T T + RV Sbjct: 67 QLMPYVSDHVLTAMQRERMFACWPGPVTFVVPAAPHT--PRWLTGQFDSLAIRVSDHPDV 124 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + L + PL SAN SGQ V + P +++G S I +V Sbjct: 125 QALCRAFDKPLVSTSANLSGQPPCRTVDEVKR-QFGPAFP-VLNGNTGGRLNPSEIRDVI 182 Query: 185 CEKKVR 190 ++R Sbjct: 183 SGNQIR 188 >gi|316984949|gb|EFV63905.1| yrdC domain protein [Neisseria meningitidis H44/76] gi|325134902|gb|EGC57535.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis M13399] gi|325140950|gb|EGC63457.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis CU385] gi|325144974|gb|EGC67257.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis M01-240013] gi|325199623|gb|ADY95078.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis H44/76] Length = 206 Score = 159 bits (404), Expect = 4e-37, Method: Composition-based stats. Identities = 41/189 (21%), Positives = 76/189 (40%), Gaps = 5/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E ++ G + PT++ Y L + A+ R+ I+K + L +D+S Sbjct: 14 ERLIKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD + K PGP T +L L KT R+P + L Sbjct: 74 ELGTYAKVDNVQFRQLKAATPGPYTFILQATKDVPARTL-HPKRKTIGLRIPDNAIAQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + + + + + L+IDGG +T+V++ Sbjct: 133 LGELGEPLLSCTLMLPEDGEPLTDPYEIRERLEHAVDLVIDGGWCGT-EPTTVVDMTDGT 191 Query: 188 KVRILRPGG 196 ++ +R G Sbjct: 192 EL--VRQGC 198 >gi|257785106|ref|YP_003180323.1| Sua5/YciO/YrdC/YwlC family protein [Atopobium parvulum DSM 20469] gi|257473613|gb|ACV51732.1| Sua5/YciO/YrdC/YwlC family protein [Atopobium parvulum DSM 20469] Length = 216 Score = 159 bits (404), Expect = 4e-37, Method: Composition-based stats. Identities = 60/199 (30%), Positives = 101/199 (50%), Gaps = 8/199 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSR--NPTAIRRLYEIKKRPAMNPLICHVS 65 D++ + A E G + +PT++VYG+ + NP +R++EIK+RP L V Sbjct: 13 DASVVSLAVEVARRGGVLIMPTDSVYGIGAAATPQNP-GHKRIFEIKQRPVEQTLPWLVG 71 Query: 66 DISMVKKHASVD-PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GF 123 S ++K+A + + L + +WPG LTLV++ + N +T R+P Sbjct: 72 SKSDLQKYAHITHDWANKLVEAYWPGALTLVVNASENVPEEYVLPDN-RTIALRMPNSPL 130 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 ++ + G PLA SAN G S + L + + +E L++DGG + + + STIV+ Sbjct: 131 VCRIAQQLGCPLATTSANTHGTPSAVDGCG-LEAELVEEADLVLDGGPAPLAIASTIVDC 189 Query: 184 QCEKKVRILRPGGLEIETL 202 + +RILR G L E + Sbjct: 190 TGNE-LRILREGALPTEDI 207 >gi|332522804|ref|ZP_08399056.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus porcinus str. Jelinkova 176] gi|332314068|gb|EGJ27053.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus porcinus str. Jelinkova 176] Length = 197 Score = 159 bits (404), Expect = 4e-37, Method: Composition-based stats. Identities = 54/197 (27%), Positives = 91/197 (46%), Gaps = 6/197 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + K ++ G + +PTETVYGL + + A+ +Y +K+RP + +V+D + Sbjct: 1 MDKLKSIIENGGALVLPTETVYGLFAKAMDEQAVNMVYTLKQRPREKAMNLNVADYQAIL 60 Query: 72 KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130 ++ P L L F PGPLT++L + + + T FR+P + + Sbjct: 61 DYSKDQPTYLKELYDAFLPGPLTIIL--KANDRVPFWINSGKDTVGFRLPKHPVTEQLIR 118 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 PL PSAN SG+ S I+ + + D S G +STI+++ K + Sbjct: 119 IAGPLIGPSANLSGRQSGCQYAEIIKA-FHNRVEGYEDD-QSLTGQDSTIIDLSG-PKAK 175 Query: 191 ILRPGGLEIETLKRAIS 207 ILR G + ++ IS Sbjct: 176 ILRQGSISAADIQTKIS 192 >gi|270294398|ref|ZP_06200600.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. D20] gi|270275865|gb|EFA21725.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. D20] Length = 204 Score = 159 bits (404), Expect = 4e-37, Method: Composition-based stats. Identities = 48/196 (24%), Positives = 79/196 (40%), Gaps = 11/196 (5%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICH 63 + L++ + L+ G + PT+T+Y + AI R+ +K P N L Sbjct: 8 KNNNPADLQQVIDLLNDGGILIYPTDTMYAIGCHGLKERAIERICRLKDIDPKKNNLSII 67 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 D+S V ++A VD + L K PG T +L+ T P N K R+P Sbjct: 68 CYDLSKVSEYAKVDNSTFKLMKRNLPGAFTFILN---GTTRLPKIFRNRKEVGIRMPDNS 124 Query: 123 FTKKLIETYGHPLAIPSANRSG--QISITNVKHILSSSICKEIPLIIDGGISKIGLE-ST 179 +++ P+ + I ++ + L+IDGGI G E ST Sbjct: 125 IIQEIARLLDAPIMTTTLPHDDNEDIEYCTDPELIDEKFGDIVDLVIDGGIG--GTEGST 182 Query: 180 IVNVQCEKKVRILRPG 195 +V+ + I+R G Sbjct: 183 VVDCTNGEP-EIIRQG 197 >gi|222111934|ref|YP_002554198.1| sua5/ycio/yrdc/ywlc family protein [Acidovorax ebreus TPSY] gi|221731378|gb|ACM34198.1| Sua5/YciO/YrdC/YwlC family protein [Acidovorax ebreus TPSY] Length = 211 Score = 159 bits (404), Expect = 4e-37, Method: Composition-based stats. Identities = 49/198 (24%), Positives = 86/198 (43%), Gaps = 6/198 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 L++A L +G +A+PT++ Y L + A+ R+ I++ + L D+S Sbjct: 14 PRLLKQAATLLSSGGILAVPTDSSYALVCRLDDKDAVDRIRRIRQINDKHHLTLLCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127 + +A VD L KL PGP T +LD +S KT RVP + L Sbjct: 74 ELANYAHVDNRQYRLLKLATPGPYTFILDATKEVP-RRVSHPQRKTIGLRVPDRKGLQML 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ--- 184 +E +G PL + +G+ N + K++ I+D G + +T++++ Sbjct: 133 LELHGAPLLATTLIPAGESEPLNDPQEIRERFEKQLDGILDAGGCPL-EPTTVLDLTPMN 191 Query: 185 CEKKVRILRPGGLEIETL 202 ++R GG + L Sbjct: 192 TGGDPIVVREGGGSLAKL 209 >gi|77165846|ref|YP_344371.1| putative translation factor, Sua5/YciO/YrdC/YwlC [Nitrosococcus oceani ATCC 19707] gi|254433299|ref|ZP_05046807.1| Sua5/YciO/YrdC/YwlC family protein [Nitrosococcus oceani AFC27] gi|76884160|gb|ABA58841.1| translation factor SUA5 [Nitrosococcus oceani ATCC 19707] gi|207089632|gb|EDZ66903.1| Sua5/YciO/YrdC/YwlC family protein [Nitrosococcus oceani AFC27] Length = 209 Score = 159 bits (404), Expect = 4e-37, Method: Composition-based stats. Identities = 44/188 (23%), Positives = 73/188 (38%), Gaps = 4/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 L +A FL I PT++ Y L N A R+ +++ + D+S Sbjct: 14 QRLLNQAVNFLQQEGLIVYPTDSGYALGCRVGNKAAADRIRQLRGLGNRHEFSLVSRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A V + L K PG T + L +T RVP T+ L Sbjct: 74 ELSLYAKVGNSAFRLLKALTPGAYTFIFKATREVP-RRLQDPKRRTIGIRVPDNTVTQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + T G PL + G+ + I ++ LIIDGG +T+V++ + Sbjct: 133 LATLGEPLISSTLLLPGEDIPLTDPEEIRDRIGSQVDLIIDGGYCGF-EPTTVVDLVEDM 191 Query: 188 KVRILRPG 195 +++R G Sbjct: 192 P-KVIREG 198 >gi|290770141|gb|ADD61901.1| putative protein [uncultured organism] Length = 204 Score = 159 bits (404), Expect = 4e-37, Method: Composition-based stats. Identities = 48/196 (24%), Positives = 79/196 (40%), Gaps = 11/196 (5%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICH 63 + L++ + L+ G + PT+T+Y + AI R+ +K P N L Sbjct: 8 KNNNPADLQQVIDLLNDGGILIYPTDTMYAIGCHGLKERAIERICRLKDIDPKKNNLSII 67 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 D+S V ++A VD + L K PG T +L+ T P N K R+P Sbjct: 68 CYDLSKVSEYAKVDNSTFKLMKRNLPGAFTFILN---GTTRLPKIFRNRKEVGIRMPDNS 124 Query: 123 FTKKLIETYGHPLAIPSANRSG--QISITNVKHILSSSICKEIPLIIDGGISKIGLE-ST 179 +++ P+ + I ++ + L+IDGGI G E ST Sbjct: 125 IIQEIARLLDAPIMTTTLPHDDNEDIEYCTDPELIDEKFGDIVDLVIDGGIG--GTEGST 182 Query: 180 IVNVQCEKKVRILRPG 195 +V+ + I+R G Sbjct: 183 VVDCTNGEP-EIIRQG 197 >gi|254672732|emb|CBA06707.1| conserved hypothetical protein [Neisseria meningitidis alpha275] Length = 206 Score = 159 bits (404), Expect = 4e-37, Method: Composition-based stats. Identities = 41/189 (21%), Positives = 76/189 (40%), Gaps = 5/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E ++ G + PT++ Y L + A+ R+ I+K + L +D+S Sbjct: 14 ERLIKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD + K PGP T +L L KT R+P + L Sbjct: 74 ELGTYAKVDNVQFRQLKAATPGPYTFILQATKDVPARTL-HPKRKTIGLRIPDNAIAQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + + + + + L+IDGG +T+V++ Sbjct: 133 LGELGEPLLSCTLMLPEDGEPLTDPYEIRERLEHAVDLVIDGGWCGT-EPTTVVDMTDGT 191 Query: 188 KVRILRPGG 196 ++ +R G Sbjct: 192 EL--VRRGC 198 >gi|302037883|ref|YP_003798205.1| putative dsRNA-binding protein [Candidatus Nitrospira defluvii] gi|300605947|emb|CBK42280.1| putative dsRNA-binding protein, predicted ribosome maturation factor [Candidatus Nitrospira defluvii] Length = 215 Score = 159 bits (404), Expect = 4e-37, Method: Composition-based stats. Identities = 65/209 (31%), Positives = 106/209 (50%), Gaps = 9/209 (4%) Query: 3 IMSITDSN---ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 ++ TD+ L + LDA +A+PTET YGLAV + A++ L E+K RPA P Sbjct: 4 VLPFTDTTCDLVLSDVRQVLDAHGVVALPTETYYGLAVRPTDTAALQHLMELKGRPADKP 63 Query: 60 LICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 ++ + + + S+ P + L +LFWPGPLT+V D+ L TA T R Sbjct: 64 ILVLIGSPDQLPQLVRSIPPAAALLMELFWPGPLTIVFPAAP--DLPALLTAGTGTIGVR 121 Query: 119 VPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 + + + PL SANRS + S+ + + + + LI+DGG + GL S Sbjct: 122 LSPLLQLQHLLQRTGPLTGTSANRSSEPSLDTAAAVQGA-LGAGVDLILDGGPTPGGLPS 180 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAIS 207 T+V+ + + +LR G L + ++ A++ Sbjct: 181 TMVDAR--DRPHLLRAGALPTDLIRAALA 207 >gi|113867221|ref|YP_725710.1| putative translation factor (SUA5) [Ralstonia eutropha H16] gi|113525997|emb|CAJ92342.1| putative translation factor (SUA5) [Ralstonia eutropha H16] Length = 207 Score = 159 bits (404), Expect = 5e-37, Method: Composition-based stats. Identities = 46/197 (23%), Positives = 82/197 (41%), Gaps = 5/197 (2%) Query: 1 MQIMSITDSNAL-RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 +I + + L ++A + L G IA+PT++ Y LA + A+ RL ++ + Sbjct: 5 FEIHPLNPQSRLVKQAAQILQKGGLIALPTDSSYALACRLDDKAAVERLRRLRGIDDRHH 64 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 L D+S + A VD K PGP +L+ LS KT RV Sbjct: 65 LTLMCRDLSELGNFARVDNRQYRWLKGATPGPYVFILEATKEVP-RRLSHPARKTIGVRV 123 Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P L+ G PL + G N + + + K++ L++ GG + + Sbjct: 124 PEHAIPLALLGETGEPLISATLQMPGDEEPLNDPAEIRARLEKQLDLVVCGGPAPA-QPT 182 Query: 179 TIVNVQCEKKVRILRPG 195 T++++ + ++R G Sbjct: 183 TVIDLTGGEP-ELIRAG 198 >gi|254671067|emb|CBA07959.1| conserved hypothetical protein [Neisseria meningitidis alpha153] Length = 206 Score = 159 bits (404), Expect = 5e-37, Method: Composition-based stats. Identities = 40/189 (21%), Positives = 76/189 (40%), Gaps = 5/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E ++ G + PT++ Y L + A+ R+ I+K + L +D+S Sbjct: 14 ERLIKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A +D + K PGP T +L L KT R+P + L Sbjct: 74 ELGTYAKIDNVQFRQLKAATPGPYTFILQATKEVPARTL-HPKRKTIGLRIPDNAIAQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + + + + + L+IDGG +T+V++ Sbjct: 133 LGELGEPLLSCTLMLPEDGEPLTDPYEIRERLEHAVDLVIDGGWCGT-EPTTVVDMTDGT 191 Query: 188 KVRILRPGG 196 ++ +R G Sbjct: 192 EL--VRQGC 198 >gi|91793800|ref|YP_563451.1| Sua5/YciO/YrdC/YwlC [Shewanella denitrificans OS217] gi|91715802|gb|ABE55728.1| translation factor SUA5 [Shewanella denitrificans OS217] Length = 206 Score = 159 bits (404), Expect = 5e-37, Method: Composition-based stats. Identities = 44/207 (21%), Positives = 76/207 (36%), Gaps = 8/207 (3%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 Q I D N + +A L G I PT++ Y L A+ R+ I+K Sbjct: 3 QFFYIHDENPQARLISQAVAILKKGGVIVYPTDSGYALGCMIGEKDAMTRMVRIRKIEND 62 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 + D+S + A VD + L K PGP T + L KT Sbjct: 63 HNFSLMCRDLSELANFAKVDNQAYRLLKSSTPGPYTFIFKATKEVP-KRLQCEKKKTIGI 121 Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 RVP + L+ P+ S ++ + + + ++ I+ GG Sbjct: 122 RVPDNLIAQALLTALDAPMMSTSLVMPDELFAESDPEHIRDILEHQVDAIVHGGYLPEKQ 181 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLK 203 +T++++ E + +LR G + + Sbjct: 182 -TTVIDM-SEDTIDVLRHGAGDTSAFE 206 >gi|238921405|ref|YP_002934920.1| hypothetical protein NT01EI_3556 [Edwardsiella ictaluri 93-146] gi|238870974|gb|ACR70685.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 189 Score = 159 bits (404), Expect = 5e-37, Method: Composition-based stats. Identities = 50/186 (26%), Positives = 76/186 (40%), Gaps = 8/186 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S++L A L IA PTE V+GL D + A++ L +K+RP LI +D Sbjct: 6 SDSLAAAVAALRQQRVIAYPTEAVFGLGCDPDSEPAVQALLGLKQRPWDKGLILIAADYQ 65 Query: 69 MVKKHASVDPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-T 124 + + + L A +F WPGP+T V+ + D T T RV Sbjct: 66 QLLPYVCDEALQGERRAAVFSHWPGPVTWVMPARA--DTPRWLTGRFSTLAVRVSAHPQV 123 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 ++L +YG PL SAN SG + P ++D + S I + Sbjct: 124 QQLCRSYGKPLVSTSANLSGLPPCRTAAEV-RQQFGSAFP-VLDAPVGGRQNPSEIRDAL 181 Query: 185 CEKKVR 190 + +R Sbjct: 182 SGELLR 187 >gi|212277726|sp|A8AQH7|RIMN_CITK8 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN Length = 190 Score = 159 bits (404), Expect = 5e-37, Method: Composition-based stats. Identities = 48/187 (25%), Positives = 75/187 (40%), Gaps = 8/187 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 ++A+ A L IA PTE V+G+ D + TA+ RL E+K+RP LI ++ Sbjct: 6 PTDAIAAAVAVLHKECVIAYPTEAVFGVGCDPDSETAVNRLLELKQRPVEKGLILIAANF 65 Query: 68 SMVKKHASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 +K + WPGP+T V +TT T + RV Sbjct: 66 EQLKPYIDDSMLTDTQREAIFACWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPL 123 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 L + YG PL SAN +G V+ + + + P +++G S I + Sbjct: 124 VVSLCQAYGKPLVSTSANLTGLPPCRTVEEV-RAQFGADFP-VVEGETGGRLNPSEIRDA 181 Query: 184 QCEKKVR 190 + R Sbjct: 182 LTGELFR 188 >gi|315126774|ref|YP_004068777.1| RNA binding protein [Pseudoalteromonas sp. SM9913] gi|315015288|gb|ADT68626.1| RNA binding protein [Pseudoalteromonas sp. SM9913] Length = 206 Score = 159 bits (403), Expect = 5e-37, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 71/189 (37%), Gaps = 4/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A + + G + PT++ Y + + N A R+ I+ + D+S Sbjct: 14 PRLISQAVDIIKQGGVVVYPTDSGYAIGCNLGNKQAKERIERIRGIEKHHNFTLVCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGFTKKL 127 + +A VD L K PGP T + L KT RV L Sbjct: 74 ELSTYARVDNQMFRLIKNNTPGPYTFIFKGTKEVP-KRLLNDKKKTIGIRVIEHPIACAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL S G+ + + K + LII GG +T++++ + Sbjct: 133 LAELGEPLMSCSLILPGEEFTQADPDDILERLDKHVDLIIHGGYLPE-QATTVIDLSEDD 191 Query: 188 KVRILRPGG 196 ++ILR G Sbjct: 192 -IQILRVGC 199 >gi|325203543|gb|ADY98996.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis M01-240355] Length = 206 Score = 159 bits (403), Expect = 5e-37, Method: Composition-based stats. Identities = 40/189 (21%), Positives = 76/189 (40%), Gaps = 5/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E ++ G + PT++ Y L + A+ R+ I+K + L +D+S Sbjct: 14 ERLIKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A +D + K PGP T +L L KT R+P + L Sbjct: 74 ELGTYAKIDNVQFRQLKAATPGPYTFILQATKDVPARTL-HPKRKTIGLRIPDNAIAQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + + + + + L+IDGG +T+V++ Sbjct: 133 LGELGEPLLSCTLMLPEDGEPLTDPYEIRERLEHAVDLVIDGGWCGT-EPTTVVDMTDGT 191 Query: 188 KVRILRPGG 196 ++ +R G Sbjct: 192 EL--VRQGC 198 >gi|322799894|gb|EFZ21035.1| hypothetical protein SINV_05462 [Solenopsis invicta] Length = 239 Score = 159 bits (403), Expect = 5e-37, Method: Composition-based stats. Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 10/193 (5%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++ A E L G IA+PT+TVYGLA + + AI+RLYEIK+R PL +S++ Sbjct: 30 DRSIAMAAEMLRQGKVIALPTDTVYGLACLATDTCAIQRLYEIKRRDEGKPLAICLSNVK 89 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128 V +D + ++ + PGP T+ L ++ + T RVP + + Sbjct: 90 EVGTWGILDDIPANMLEQLLPGPYTICLRRTPA--LNRALNPGVDTVGIRVPDNKFIRSV 147 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG------ISKIGLESTIVN 182 PLA+ SAN S + S N ++ E+ I I + + ST+V+ Sbjct: 148 AQIAGPLALTSANVSSEPSSLNPYE--FRALWSEVDGIFHDSNNCRKQIDQRRVGSTVVD 205 Query: 183 VQCEKKVRILRPG 195 + ++R G Sbjct: 206 ISKPGCFTVVRHG 218 >gi|261391950|emb|CAX49412.1| conserved hypothetical protein [Neisseria meningitidis 8013] Length = 206 Score = 159 bits (403), Expect = 5e-37, Method: Composition-based stats. Identities = 40/189 (21%), Positives = 76/189 (40%), Gaps = 5/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E ++ G + PT++ Y L + A+ R+ I+K + L +D+S Sbjct: 14 ERLIKQAVEIVNQGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A +D + K PGP T +L L KT R+P + L Sbjct: 74 ELGTYAKIDNVQFRQLKAATPGPYTFILQATKEVPARTL-HPKRKTIGLRIPDNAIAQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + + + + + L+IDGG +T+V++ Sbjct: 133 LGELGEPLLSCTLMLPEDGEPLTDPYEIRERLEHAVDLVIDGGWCGT-EPTTVVDMTDGT 191 Query: 188 KVRILRPGG 196 ++ +R G Sbjct: 192 EL--VRRGC 198 >gi|156101636|ref|XP_001616511.1| hypothetical protein [Plasmodium vivax SaI-1] gi|148805385|gb|EDL46784.1| hypothetical protein, conserved [Plasmodium vivax] Length = 560 Score = 159 bits (403), Expect = 5e-37, Method: Composition-based stats. Identities = 64/216 (29%), Positives = 109/216 (50%), Gaps = 15/216 (6%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV-K 71 R+ ++A + +PTETVYGL +S + ++R ++++K RP +P+I HV D+ Sbjct: 23 RRLRAHIEADCLVGMPTETVYGLGGNSLSERSLRNIFQMKNRPVSDPIISHVYDVRQAFD 82 Query: 72 KHASVDP----LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126 + V+P + L K FWPGPL+++ + ++ + TA+ R+P + Sbjct: 83 QLYHVNPFEMFVIYSLGKSFWPGPLSII--AKAKKEVPLILTAHTGFCAVRMPRNNIALE 140 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 +I+ P+A PSAN+ IS T H+ E LI D G IG+EST++ + Sbjct: 141 IIKVSQVPIAAPSANKFQHISPTTAAHVYKE-FESENVLIFDDGQCDIGIESTVLKLLKF 199 Query: 187 KKV-----RILRPGGLEIETL-KRAISVELEYCVDE 216 +KV LR GG +E + ++ + E D+ Sbjct: 200 RKVGGAQSNELRGGGQILEEIPQKELPQMEEVTTDD 235 Score = 40.4 bits (94), Expect = 0.39, Method: Composition-based stats. Identities = 37/202 (18%), Positives = 72/202 (35%), Gaps = 46/202 (22%) Query: 160 CKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETST 219 +++ ++ GG LE T V + G L A++ L ++ Sbjct: 351 FEKVAILCSGGEGGAQLEGTPSEVAPKGGPSGAPNGA-----LNGALNNRLPSRLNGNPA 405 Query: 220 PQS------PGMLKSHYAPRSQVRLRAIHVN------------------PREALIRFGNV 255 ++ PG+L +HY+P L + + L+ GN Sbjct: 406 EEAAQNEVSPGLLLTHYSPVVSTYLLDGAPDGEDQNGSASKQPIASIRLAKYVLLDIGNS 465 Query: 256 PIKNIENAIISLNLSKTG--KLKE----AAFNLFNYMKIADDS----GASSIAFS----- 300 ++ + + +N+S G +E N F +++ A++ A I S Sbjct: 466 FERHQGDFLKYMNISYGGVETKEEQTKLVMRNFFLFLRQAEELAIEHQAEGILISIVNLK 525 Query: 301 SIPNHGLGIAINNRLERAAAPR 322 + L +I +R+ RAA+ R Sbjct: 526 CVDEGSL--SIFDRVFRAASGR 545 >gi|325128851|gb|EGC51710.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis N1568] gi|325142951|gb|EGC65309.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis 961-5945] Length = 206 Score = 159 bits (403), Expect = 5e-37, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 76/189 (40%), Gaps = 5/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E ++ G + PT++ Y L + A+ R+ I+K + L +D+S Sbjct: 14 ERLIKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A +D + K PGP T +L L KT R+P + L Sbjct: 74 ELGTYAKIDNVQFRQLKAATPGPYTFILQATKDVPARTL-HPKRKTIGLRIPDNAIAQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + + + + + L+IDGG +T++++ Sbjct: 133 LGELGEPLLSCTLMLPEDGEPLTDPYEIRERLEHAVDLVIDGGWCGT-EPTTVIDMTDGT 191 Query: 188 KVRILRPGG 196 ++ +R G Sbjct: 192 EL--VRQGC 198 >gi|283480062|emb|CAY75978.1| Uncharacterized protein yrdC [Erwinia pyrifoliae DSM 12163] Length = 190 Score = 159 bits (403), Expect = 5e-37, Method: Composition-based stats. Identities = 57/194 (29%), Positives = 85/194 (43%), Gaps = 10/194 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M++ + DS L + E L IA PTE V+GL D + A+ RL +K+RP L Sbjct: 1 MKMNPVVDS--LAQCVEQLAQSQVIAYPTEAVFGLGCDPDSEEAVMRLLVLKQRPVKKGL 58 Query: 61 ICHVSDISMVKKHASVDPL-SLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 I +D + + + L + A++F WPGP+T VL STT T T Sbjct: 59 ILIAADYQQLIPWIADEQLSAEQKARMFSRWPGPVTWVLPARSTT--PGWLTGQFTTLAV 116 Query: 118 RVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 RV L +G PL SAN +G +V +L + + P ++ G Sbjct: 117 RVSDHPDVIALCHAFGKPLVSTSANLTGLPPCRHVAEVL-AQFGPDFP-VLKGETGGRLN 174 Query: 177 ESTIVNVQCEKKVR 190 S I +V + +R Sbjct: 175 PSEIRDVLTGELIR 188 >gi|94994410|ref|YP_602508.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pyogenes MGAS10750] gi|94547918|gb|ABF37964.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pyogenes MGAS10750] Length = 206 Score = 159 bits (403), Expect = 5e-37, Method: Composition-based stats. Identities = 55/188 (29%), Positives = 90/188 (47%), Gaps = 6/188 (3%) Query: 16 CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75 ++ G + +PTETVYGL + + A+ +Y++K+RP + +V+D + + + Sbjct: 15 ASIIELGDALVLPTETVYGLFAKALDEKAVNAVYDLKQRPRDKAMNLNVADFNSILAFSK 74 Query: 76 VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHP 134 P L L + F PGPLT++L + + + L T FR+P + P Sbjct: 75 EQPRYLKKLYQAFLPGPLTIILK--ANDQVPYWINSGLSTVGFRLPSHPITAALIQKTGP 132 Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194 L PSAN SG+ S HI+ + D ++ G +STI+++ E V ILR Sbjct: 133 LIGPSANLSGKASGRVFDHIMQDFDFQVFGYADDPFLT--GKDSTILDLSGECAV-ILRQ 189 Query: 195 GGLEIETL 202 G + E L Sbjct: 190 GAITKEEL 197 >gi|325205504|gb|ADZ00957.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis M04-240196] Length = 206 Score = 159 bits (403), Expect = 5e-37, Method: Composition-based stats. Identities = 41/189 (21%), Positives = 76/189 (40%), Gaps = 5/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E ++ G + PT++ Y L + A+ R+ I+K + L +D+S Sbjct: 14 ERLIKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD + K PGP T +L L KT R+P + L Sbjct: 74 ELGTYAKVDNVQFRQLKAATPGPYTFILQATKDVPARTL-HPKRKTIGLRIPDNAIAQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + + + + + L+IDGG +T+V++ Sbjct: 133 LGELGEPLLSCTLMLPEDGEPLTDPYEIRERLEHAVDLVIDGGWCGT-EPTTVVDMTDGT 191 Query: 188 KVRILRPGG 196 ++ +R G Sbjct: 192 EL--VRRGC 198 >gi|187250922|ref|YP_001875404.1| putative translation factor [Elusimicrobium minutum Pei191] gi|186971082|gb|ACC98067.1| Putative translation factor [Elusimicrobium minutum Pei191] Length = 210 Score = 159 bits (403), Expect = 5e-37, Method: Composition-based stats. Identities = 58/209 (27%), Positives = 98/209 (46%), Gaps = 11/209 (5%) Query: 2 QIMSITD--SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 +I I + + +A L G I PT+TVYG+ D+ NP A++R+ EIK++P+ P Sbjct: 4 RIFKIEEVTKEIMLQAVNDLKNGAVIIAPTDTVYGIMADALNPQAVKRMCEIKQKPSDVP 63 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 L SDI K+ A P + LA+ +WPGPLT+++ T RV Sbjct: 64 LQYLASDIKYAKRIALFSPKATLLAEKYWPGPLTIIVPPSKEG---KKYLRGFDTLGIRV 120 Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P F L+ +G A SAN + I + + ++ ++ I GG S Sbjct: 121 PKNDFIANLLNAFGGVAAASSANLHSKPVINSQEELIKE-FNGKVDYIFTGGQ-FSSESS 178 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAIS 207 T++++ + +I R GG++ + + + Sbjct: 179 TVLSL---EPFKIFREGGIKEKDVLNFFA 204 >gi|88860592|ref|ZP_01135229.1| putative double-stranded RNA-binding protein with unique protein fold, with YrdC/RibB domain [Pseudoalteromonas tunicata D2] gi|88817187|gb|EAR27005.1| putative double-stranded RNA-binding protein with unique protein fold, with YrdC/RibB domain [Pseudoalteromonas tunicata D2] Length = 187 Score = 159 bits (403), Expect = 5e-37, Method: Composition-based stats. Identities = 50/192 (26%), Positives = 81/192 (42%), Gaps = 9/192 (4%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 MS+ D L + L+ G I PTE VYGL D N +A+ L IK+RP LI Sbjct: 1 MSVHDE--LTQCLNKLEQGGVICYPTEAVYGLGCDPDNESAVMALLAIKQRPVEKGLILI 58 Query: 64 VSDISMVKKHASVDPLSLH-LAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 + + + + + + A++F WPG +T ++ STT T T RV Sbjct: 59 ADNYAQLLPYVDDAKIPMDKRAEIFSAWPGAVTWIMPAKSTT--PKWLTGKFDTIAVRVT 116 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 K+L + + PL SAN +GQ + ++ + + + G + S Sbjct: 117 NHSVVKQLCQQFNKPLVSTSANLTGQAPVRSLDEA-KAMFTNNVAYYVAGQLGGNTKPSQ 175 Query: 180 IVNVQCEKKVRI 191 I + + + R Sbjct: 176 IKDARTGQLFRD 187 >gi|282860060|ref|ZP_06269141.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella bivia JCVIHMP010] gi|282587148|gb|EFB92372.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella bivia JCVIHMP010] Length = 189 Score = 159 bits (403), Expect = 5e-37, Method: Composition-based stats. Identities = 45/189 (23%), Positives = 88/189 (46%), Gaps = 8/189 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++KA E + G I PT+TV+G+ D+ NP A+ ++Y++K+R LIC V + Sbjct: 4 EDDIKKAIEVMRQGGVILYPTDTVWGIGCDATNPEAVAKVYKLKRRDDSKALICLVDSEN 63 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKK 126 ++++ +V ++ L + P TL+LD ++ P A + R+ F+ + Sbjct: 64 RLQRYVRNVPDVAWQLMEAVT-KPTTLILDN--AVNLAPNLIAEDGSIGMRITKEPFSHE 120 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--GLESTIVNVQ 184 L + + SAN SG+ + N I + + + + S+I+ + Sbjct: 121 LCFRFQKAIVSTSANISGEQAAQNYGDISQEILEG-VDYVCFARRQEHEPHTPSSIIKLS 179 Query: 185 CEKKVRILR 193 + V I+R Sbjct: 180 ADGTVNIIR 188 >gi|238899277|ref|YP_002924960.1| putative translation factor, yrdC domain protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229467038|gb|ACQ68812.1| putative translation factor, yrdC domain protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 206 Score = 159 bits (403), Expect = 5e-37, Method: Composition-based stats. Identities = 42/186 (22%), Positives = 74/186 (39%), Gaps = 3/186 (1%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + ++ + L G + PT++ Y L +A R+ +I++R + + D+S + Sbjct: 17 INQSIDLLKKGSVMVYPTDSGYALGCLLEKKSAQERICQIRERTSDHHFTLVCRDLSEIA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 +A +D + L K PG T +L L KT RVP L++ Sbjct: 77 LYAYLDNSAFRLIKNNTPGRYTFILKATKEVP-RRLMNEKRKTIGLRVPSNDIALALLDA 135 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 PL + G + + K++ LIIDGG +TI+++ V Sbjct: 136 LNEPLMSTTLILPGDDFAQFDPEQIKQKLGKKVDLIIDGG-CIAEQPTTIIDLTDGNPVL 194 Query: 191 ILRPGG 196 + GG Sbjct: 195 VRSGGG 200 >gi|224283868|ref|ZP_03647190.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium bifidum NCIMB 41171] Length = 229 Score = 159 bits (403), Expect = 5e-37, Method: Composition-based stats. Identities = 60/212 (28%), Positives = 100/212 (47%), Gaps = 8/212 (3%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M + + +L +A + G + IPT+TVYG+A D RN AI R+Y++K RP L Sbjct: 11 MSAVRKVNEESLAEAASVIAGGGLVVIPTDTVYGVACDPRNEAAIDRIYQVKSRPRFKAL 70 Query: 61 ICHVSDISMVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTA--NLKTACF 117 ++ + + P L LA F PG + + + +S +T Sbjct: 71 QVLLASVDQLDGLGLDLPSPLNRLAAQFLPGAFSPIAVAREDCTLATVSATPQGRRTQGI 130 Query: 118 RVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 RVP T +++ G PLA SANRSG S V+ + + ++ L +DGG ++ + Sbjct: 131 RVPNSALTLRILNELG-PLAASSANRSGDESAQTVEEAVQA-FGDDVQLYLDGGPTQGHV 188 Query: 177 ESTIV--NVQCEKKVRILRPGGLEIETLKRAI 206 ST+V + + ILR G + +++A+ Sbjct: 189 ASTVVAADPHERDGIVILREGVIPQPVVRKAV 220 >gi|325132982|gb|EGC55659.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis M6190] gi|325138970|gb|EGC61520.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis ES14902] Length = 206 Score = 159 bits (403), Expect = 5e-37, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 76/189 (40%), Gaps = 5/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E ++ G + PT++ Y L + A+ R+ I+K + L +D+S Sbjct: 14 ERLIKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A +D + K PGP T +L L KT R+P + L Sbjct: 74 ELGTYAKIDNVQFRQLKAATPGPYTFILQATKEVPARTL-HPKRKTIGLRIPDNAIAQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + + + + + L+IDGG +T++++ Sbjct: 133 LGELGEPLLSCTLMLPEDGEPLTDPYEIRERLEHAVDLVIDGGWCGT-EPTTVIDMTDGT 191 Query: 188 KVRILRPGG 196 ++ +R G Sbjct: 192 EL--VRQGC 198 >gi|301614722|ref|XP_002936826.1| PREDICTED: hypothetical protein LOC100498107 [Xenopus (Silurana) tropicalis] Length = 866 Score = 159 bits (403), Expect = 5e-37, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 97/205 (47%), Gaps = 9/205 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++LR LD G IPT+TVY LA ++P AI R+Y IK+RP+ P+ +S++ Sbjct: 652 TSSLRTIANILDNGGVCGIPTDTVYALAASCKHPEAINRIYSIKERPSEKPICICISNLD 711 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPL--STANLKTACFRVPCG 122 ++ + PL L +PG ++ ++ + L + P + RVP Sbjct: 712 QLRVISPPFSPLLWRFMDLVYPGGISCIVQKGEWLKKLGVGPAYERVGTNDSIMIRVPDH 771 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 + PLAI SAN SG+ T+ +++ + ++ ++ G S + ST+VN Sbjct: 772 SVTAHLTDMTGPLAITSANPSGESDSTHHDMVIT-RLSDKLDAVLCDGFSNELVGSTVVN 830 Query: 183 VQ--CEKKVRILRPGGLEIETLKRA 205 E ++ILR G + + + Sbjct: 831 CTKIDEGTIKILREGCVPTTKIMQL 855 >gi|299067192|emb|CBJ38388.1| conserved protein of unknown function, translation factor domain (SUA5) [Ralstonia solanacearum CMR15] Length = 207 Score = 159 bits (403), Expect = 6e-37, Method: Composition-based stats. Identities = 50/198 (25%), Positives = 84/198 (42%), Gaps = 4/198 (2%) Query: 1 MQIMSITDS-NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 QI T +R+A E + AG IA+PT++ Y LA + A+ RL ++ + Sbjct: 5 FQIHPTTPQGRLIRQAVEIIRAGGLIALPTDSCYALACHLDDKAAVERLRRVRGIDEKHH 64 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 L D+S + A VD K PGP +L+ LS + KT RV Sbjct: 65 LTLMCRDLSELATFARVDNRQYRAVKAATPGPFVFLLEATKEVP-RRLSHPSRKTIGLRV 123 Query: 120 PCGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P L+ G PL + G + N + + + +++ L+IDGG + + Sbjct: 124 PDHPIPLALMAELGEPLLSATLQLPGDEAPLNEADAIRARLERQLELVIDGGPAPA-EPT 182 Query: 179 TIVNVQCEKKVRILRPGG 196 T++++ + + R G Sbjct: 183 TVIDLTGGEPELVRRGRG 200 >gi|120436628|ref|YP_862314.1| YrdC domain-containing protein [Gramella forsetii KT0803] gi|117578778|emb|CAL67247.1| protein containing YrdC domain [Gramella forsetii KT0803] Length = 189 Score = 159 bits (403), Expect = 6e-37, Method: Composition-based stats. Identities = 45/186 (24%), Positives = 82/186 (44%), Gaps = 3/186 (1%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +R + L G I PT+TV+G+ D+ N A+ +++++KKR LIC VS+ Sbjct: 5 EQEVRNCIDVLKKGGIILYPTDTVWGIGCDATNANAVDKVFQLKKREESKALICLVSNFK 64 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKL 127 M++++ P + + + P T++ D I ++ + R V F L Sbjct: 65 MLEQYVEDVPETAYDILKYAKKPTTVIYD--KPVHIAENLVSDDDSLGIRVVRDTFCSDL 122 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I+ PL SAN SGQ + + I + ++ K S I+ + + Sbjct: 123 IKKLKRPLVSTSANVSGQPTPQSFDQITPQILKGVDYVVNLQRSKKSPRPSAIIKLSNDG 182 Query: 188 KVRILR 193 V+++R Sbjct: 183 LVKVIR 188 >gi|237748690|ref|ZP_04579170.1| translation factor [Oxalobacter formigenes OXCC13] gi|229380052|gb|EEO30143.1| translation factor [Oxalobacter formigenes OXCC13] Length = 208 Score = 159 bits (403), Expect = 6e-37, Method: Composition-based stats. Identities = 47/197 (23%), Positives = 89/197 (45%), Gaps = 5/197 (2%) Query: 1 MQIMSITDSNAL-RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 ++I + + L +KA + + AG I +PT++ Y L + A+ R+ +I++ + Sbjct: 6 LEIHPVDPQDRLVKKAADIIRAGGVIVLPTDSSYALVCRLDDKAAVDRIRQIRQIDERHL 65 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 L D+ V +A VD S L K PG T +L LS + KT R+ Sbjct: 66 LTLLCRDLKEVGSYAQVDNGSYRLLKSATPGAFTFILRASKEVP-RRLSHPSRKTIGLRI 124 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P + L++ G PL + G+ ++ + K + ++DGG + L + Sbjct: 125 PDNRIVQALLDELGEPLIGTTVILPGEEDPYTEGDVIQERLEKLVDAVVDGGACGL-LPT 183 Query: 179 TIVNVQCEKKVRILRPG 195 T+V++ ++ ++R G Sbjct: 184 TVVDLTG-REAELVRSG 199 >gi|301614720|ref|XP_002936825.1| PREDICTED: uncharacterized protein ywlC-like [Xenopus (Silurana) tropicalis] Length = 243 Score = 159 bits (403), Expect = 6e-37, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 97/205 (47%), Gaps = 9/205 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++LR LD G IPT+TVY LA ++P AI R+Y IK+RP+ P+ +S++ Sbjct: 29 TSSLRTIANILDNGGVCGIPTDTVYALAASCKHPEAINRIYSIKERPSEKPICICISNLD 88 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPL--STANLKTACFRVPCG 122 ++ + PL L +PG ++ ++ + L + P + RVP Sbjct: 89 QLRVISPPFSPLLWRFMDLVYPGGISCIVQKGEWLKKLGVGPAYERVGTNDSIMIRVPDH 148 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 + PLAI SAN SG+ T+ +++ + ++ ++ G S + ST+VN Sbjct: 149 TVTAHLTDMTGPLAITSANPSGESDSTHHDMVIT-RLSDKLDAVLCDGFSNELVGSTVVN 207 Query: 183 VQ--CEKKVRILRPGGLEIETLKRA 205 E ++ILR G + + + Sbjct: 208 CTKIDEGTIKILREGCVPTTKIMQL 232 >gi|86132791|ref|ZP_01051383.1| Sua5/YciO/YrdC/YwlC family protein [Dokdonia donghaensis MED134] gi|85816745|gb|EAQ37931.1| Sua5/YciO/YrdC/YwlC family protein [Dokdonia donghaensis MED134] Length = 186 Score = 159 bits (403), Expect = 6e-37, Method: Composition-based stats. Identities = 49/182 (26%), Positives = 79/182 (43%), Gaps = 3/182 (1%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 A L G I PT+TV+G+ D+ NP A+ ++Y +KKR LIC VSD M+ + Sbjct: 6 DAALAVLKRGGLILYPTDTVWGIGCDATNPDAVDKVYALKKRAESKSLICLVSDFKMLNQ 65 Query: 73 HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGFTKKLIETY 131 + P + + P T++ D + A + FRV F L++ + Sbjct: 66 YVENIPEVAYDILKYAAKPTTIIYD--DPIRVATNVIAPDNSTAFRVCRNQFCNFLLKKF 123 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 P+ SAN +GQ + + I I ++ K S I+ + + KV I Sbjct: 124 KKPIVSTSANITGQPTPQSFSEISQEIIDGVDYVVNIDRSRKSSKPSAIIKLTEDGKVTI 183 Query: 192 LR 193 +R Sbjct: 184 IR 185 >gi|325269063|ref|ZP_08135684.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella multiformis DSM 16608] gi|324988684|gb|EGC20646.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella multiformis DSM 16608] Length = 189 Score = 159 bits (403), Expect = 6e-37, Method: Composition-based stats. Identities = 46/192 (23%), Positives = 88/192 (45%), Gaps = 8/192 (4%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + + +RKA E + G I PT+TV+G+ D+ N A+ ++Y +K+R LIC V Sbjct: 1 MKQEDDIRKAIEVMRKGGIILYPTDTVWGIGCDATNAEAVAKVYALKRRDDSKALICLVD 60 Query: 66 DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GF 123 ++++ +V ++ L P TL+LD ++ A + R+ F Sbjct: 61 SDDRLQRYVRNVPDVAWQLIDAV-ERPTTLILD--GAVNLAGNLIAEDGSIGIRITKEPF 117 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--GLESTIV 181 + +L + + SAN SG+ + N I + + I + + + S+IV Sbjct: 118 SHELCYRFQKAVVSTSANISGEPAAQNYCDISQEILDG-VDYICESRRQEHKPHVPSSIV 176 Query: 182 NVQCEKKVRILR 193 + + +V+I+R Sbjct: 177 KLGIDGQVKIIR 188 >gi|325198880|gb|ADY94336.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis G2136] Length = 206 Score = 159 bits (403), Expect = 6e-37, Method: Composition-based stats. Identities = 40/189 (21%), Positives = 76/189 (40%), Gaps = 5/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E ++ G + PT++ Y L + A+ R+ I+K + L +D+S Sbjct: 14 ERLIKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A +D + K PGP T +L L KT R+P + L Sbjct: 74 ELGTYAKIDNVQFRQLKAATPGPYTFILQATKEVPARTL-HPKRKTIGLRIPDNAIAQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + + + + + L+IDGG +T+V++ Sbjct: 133 LGELGEPLLSCTLMLPEDGEPLTDPYEIRERLEHAVDLVIDGGWCGT-EPTTVVDMTDGT 191 Query: 188 KVRILRPGG 196 ++ +R G Sbjct: 192 EL--VRRGC 198 >gi|161870640|ref|YP_001599813.1| hypothetical protein NMCC_1710 [Neisseria meningitidis 053442] gi|161596193|gb|ABX73853.1| putative translation factor [Neisseria meningitidis 053442] Length = 206 Score = 159 bits (403), Expect = 6e-37, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 76/189 (40%), Gaps = 5/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E ++ G + PT++ Y L + A+ R+ I+K + L +D+S Sbjct: 14 ERLIKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A +D + K PGP T +L L KT R+P + L Sbjct: 74 ELGTYAKIDNVQFRQLKAATPGPYTFILQATKDVPARTL-HPKRKTIGLRIPDNAIAQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + + + + + L+IDGG +T++++ Sbjct: 133 LGELGEPLLSCTLMLPEDGEPLTDPYEIRERLEHAVDLVIDGGWCGT-EPTTVIDMTDGT 191 Query: 188 KVRILRPGG 196 ++ +R G Sbjct: 192 EL--VRQGC 198 >gi|39938501|ref|NP_950267.1| translation factor [Onion yellows phytoplasma OY-M] gi|39721610|dbj|BAD04100.1| translation factor [Onion yellows phytoplasma OY-M] Length = 185 Score = 159 bits (403), Expect = 6e-37, Method: Composition-based stats. Identities = 54/184 (29%), Positives = 81/184 (44%), Gaps = 6/184 (3%) Query: 24 PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHL 83 I PT+TVYG+ + + +Y+IKKRP ++ + + KK P SL L Sbjct: 6 IIIFPTDTVYGMGAKLYDKKGLNCIYQIKKRPLNKSIVVLCASLQQAKKLVQFSPQSLKL 65 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRS 143 A FWPGPLTL+L T + S KT R+P I PL S N+S Sbjct: 66 ALHFWPGPLTLILP----TTLKYFSKTKAKTLGIRIPNHPLALEILKKNGPLKTTSVNQS 121 Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203 N + + ++ LI + + STIV++ + V ILR G + E + Sbjct: 122 NHP-PLNDYQTIFNIYYNKVALIYQNYHPILKISSTIVDLTTFQPV-ILRQGTITQEEIL 179 Query: 204 RAIS 207 + + Sbjct: 180 QILK 183 >gi|170061182|ref|XP_001866124.1| ischemia/reperfusion inducible protein [Culex quinquefasciatus] gi|167879525|gb|EDS42908.1| ischemia/reperfusion inducible protein [Culex quinquefasciatus] Length = 242 Score = 159 bits (402), Expect = 6e-37, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 102/206 (49%), Gaps = 8/206 (3%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 ++ I +A+ +A L++G I +PT+TVYGLA + +P AI++LY+IK R P+ Sbjct: 26 VIDIKSPDAILQAANLLESGKVIGLPTDTVYGLACSANDPAAIKKLYDIKGRICTKPIAI 85 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC- 121 V ++ V D L + L + PG +T+V+ D +P ++ RVP Sbjct: 86 CVPEVKDVLYWGKADHLPMGLLQELLPGAVTIVVKKSHYLD-NPFLNPGVEKIGIRVPKF 144 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE---- 177 F + + + + P+A+ SAN S Q S + ++ E+ + DGG E Sbjct: 145 NFIRNVTKQFKAPMALTSANFSSQKSTLEITE--FKALWPELGAVFDGGQLGQSEEQRAA 202 Query: 178 STIVNVQCEKKVRILRPGGLEIETLK 203 ST++++ +K I+R G T++ Sbjct: 203 STVIDLSEPRKFEIIRTGVAIKRTIE 228 >gi|310287869|ref|YP_003939127.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium bifidum S17] gi|313141023|ref|ZP_07803216.1| conserved protein in the Sua5/YciO/YrdC family protein [Bifidobacterium bifidum NCIMB 41171] gi|309251805|gb|ADO53553.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium bifidum S17] gi|313133533|gb|EFR51150.1| conserved protein in the Sua5/YciO/YrdC family protein [Bifidobacterium bifidum NCIMB 41171] Length = 219 Score = 159 bits (402), Expect = 6e-37, Method: Composition-based stats. Identities = 60/212 (28%), Positives = 100/212 (47%), Gaps = 8/212 (3%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M + + +L +A + G + IPT+TVYG+A D RN AI R+Y++K RP L Sbjct: 1 MSAVRKVNEESLAEAASVIAGGGLVVIPTDTVYGVACDPRNEAAIDRIYQVKSRPRFKAL 60 Query: 61 ICHVSDISMVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTA--NLKTACF 117 ++ + + P L LA F PG + + + +S +T Sbjct: 61 QVLLASVDQLDGLGLDLPSPLNRLAAQFLPGAFSPIAVAREDCTLATVSATPQGRRTQGI 120 Query: 118 RVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 RVP T +++ G PLA SANRSG S V+ + + ++ L +DGG ++ + Sbjct: 121 RVPNSALTLRILNELG-PLAASSANRSGDESAQTVEEAVQA-FGDDVQLYLDGGPTQGHV 178 Query: 177 ESTIV--NVQCEKKVRILRPGGLEIETLKRAI 206 ST+V + + ILR G + +++A+ Sbjct: 179 ASTVVAADPHERDGIVILREGVIPQPVVRKAV 210 >gi|254805532|ref|YP_003083753.1| putative translation factor [Neisseria meningitidis alpha14] gi|254669074|emb|CBA07599.1| putative translation factor [Neisseria meningitidis alpha14] Length = 206 Score = 159 bits (402), Expect = 6e-37, Method: Composition-based stats. Identities = 40/189 (21%), Positives = 76/189 (40%), Gaps = 5/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E ++ G + PT++ Y L + A+ R+ I+K + L +D+S Sbjct: 14 ERLIKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A +D + K PGP T +L L KT R+P + L Sbjct: 74 ELGTYAKIDNVQFRQLKAATPGPYTFILQATKDVPARTL-HPKRKTIGLRIPDNAIAQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + + + + + L+IDGG +T+V++ Sbjct: 133 LGELGEPLLSCTLMLPEDGEPLTDPYEIRERLEHAVDLVIDGGWCGT-EPTTVVDMTDGT 191 Query: 188 KVRILRPGG 196 ++ +R G Sbjct: 192 EL--VRRGC 198 >gi|300777696|ref|ZP_07087554.1| Sua5/YciO/YrdC/YwlC family protein [Chryseobacterium gleum ATCC 35910] gi|300503206|gb|EFK34346.1| Sua5/YciO/YrdC/YwlC family protein [Chryseobacterium gleum ATCC 35910] Length = 203 Score = 159 bits (402), Expect = 6e-37, Method: Composition-based stats. Identities = 50/202 (24%), Positives = 87/202 (43%), Gaps = 13/202 (6%) Query: 2 QIMSITD----SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 +I+ I N + + + L+ G I P++TVY L + + A+ +L ++KK Sbjct: 3 KILKIYPDNPQENLVNEVIKTLNNGGLIIYPSDTVYALGCNIFDIKAMEKLAQLKKMKLE 62 Query: 58 NP-LICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115 +D+S + +D K PGP T +L+ + PL+ KT Sbjct: 63 KSKFSIICNDLSHLSDFTRPIDTSVFRFLKSHLPGPFTFILEANKSL---PLAYKGHKTI 119 Query: 116 CFRVPCGFTKKLI-ETYGHPLAIPSANRSGQIS-ITNVKHILSSSICKEIPLIIDGGISK 173 RVP +LI E GHP+A S +I + +++ + ++ID G Sbjct: 120 GIRVPDHPIPQLIVEKLGHPIASTSIKDDDEIIEYSTDPELIAEKYDHLVDIVIDSGYGD 179 Query: 174 IGLESTIVNVQCEKKVRILRPG 195 + STIV++ + I+R G Sbjct: 180 -NVASTIVDLTSGEP-EIIRQG 199 >gi|117619223|ref|YP_854792.1| Sua5/YciO/YrdC family protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|212277665|sp|A0KEX6|RIMN_AERHH RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|117560630|gb|ABK37578.1| Sua5/YciO/YrdC family protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 186 Score = 159 bits (402), Expect = 6e-37, Method: Composition-based stats. Identities = 49/187 (26%), Positives = 78/187 (41%), Gaps = 7/187 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 N A L IA TE V+GL D + +A+ RL IK+RP LI +D++ Sbjct: 2 PNEFELAVAALQRDGVIAYATEAVFGLGCDPDSESAVHRLLAIKQRPVEKGLILIAADLA 61 Query: 69 MVKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-T 124 ++ + +D L+ L + WPGP T ++ S T T T RV Sbjct: 62 QLQDYIDLDQLTSEQLARVEASWPGPFTWIMPARSNTPA--WLTGQFTTLAVRVTAHPQV 119 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + L +G PL SAN +G+ V + + ++ I+ G + S I + + Sbjct: 120 QALCRAFGKPLVSTSANLTGEEPARRVAD-IGELLASQLAYILPGEVGGQANPSEIKDAR 178 Query: 185 CEKKVRI 191 +R Sbjct: 179 TGAIIRP 185 >gi|218295665|ref|ZP_03496461.1| Sua5/YciO/YrdC/YwlC family protein [Thermus aquaticus Y51MC23] gi|218243824|gb|EED10351.1| Sua5/YciO/YrdC/YwlC family protein [Thermus aquaticus Y51MC23] Length = 196 Score = 159 bits (402), Expect = 7e-37, Method: Composition-based stats. Identities = 54/198 (27%), Positives = 86/198 (43%), Gaps = 17/198 (8%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 L +A E L G +A PT+TV+G+ + A RR+Y +K R PL V+ + Sbjct: 6 QKELAQAAEVLKKGGLVAFPTDTVWGVMARMEDEAACRRIYALKGREEKKPLQVLVAGLE 65 Query: 69 MVKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT- 124 + + + PL L LA+ FWPG LT+V+ I P + + R+P Sbjct: 66 DALRLSDLGPLEERFLRLAEAFWPGALTIVVP---GRGIPPWIS-RDGSVGLRMPAHEAL 121 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 ++L+ G S NRSG+ + + P+ GL S++V+++ Sbjct: 122 RELLRRVGGHATATSLNRSGEPPVKTEAEA------RAFPVDFVFPGEATGLASSVVDLR 175 Query: 185 CEKKVRILRPGGLEIETL 202 ILR G + E L Sbjct: 176 TG---EILREGAIPKEAL 190 >gi|311064749|ref|YP_003971474.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium bifidum PRL2010] gi|310867068|gb|ADP36437.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium bifidum PRL2010] Length = 233 Score = 159 bits (402), Expect = 7e-37, Method: Composition-based stats. Identities = 60/212 (28%), Positives = 100/212 (47%), Gaps = 8/212 (3%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M + + +L +A + G + IPT+TVYG+A D RN AI R+Y++K RP L Sbjct: 15 MSAVRKVNEESLAEAASVIAGGGLVVIPTDTVYGVACDPRNEAAIDRIYQVKSRPRFKAL 74 Query: 61 ICHVSDISMVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTA--NLKTACF 117 ++ + + P L LA F PG + + + +S +T Sbjct: 75 QVLLASVDQLDGLGLDLPSPLNRLAAQFLPGAFSPIAVAREDCTLATVSATPQGRRTQGI 134 Query: 118 RVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 RVP T +++ G PLA SANRSG S V+ + + ++ L +DGG ++ + Sbjct: 135 RVPNSALTLRILNELG-PLAASSANRSGDESAQTVEEAVQA-FGDDVQLYLDGGPTQGHV 192 Query: 177 ESTIV--NVQCEKKVRILRPGGLEIETLKRAI 206 ST+V + + ILR G + +++A+ Sbjct: 193 ASTVVAADPHERDGIVILREGVIPQPVVRKAV 224 >gi|303244474|ref|ZP_07330809.1| Sua5/YciO/YrdC/YwlC family protein [Methanothermococcus okinawensis IH1] gi|302485172|gb|EFL48101.1| Sua5/YciO/YrdC/YwlC family protein [Methanothermococcus okinawensis IH1] Length = 212 Score = 159 bits (402), Expect = 7e-37, Method: Composition-based stats. Identities = 56/219 (25%), Positives = 104/219 (47%), Gaps = 22/219 (10%) Query: 1 MQIMSITDSNALRK--------------ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIR 46 M+I+ + + N L++ + + G I T+T+YGL + + A++ Sbjct: 1 MKILKLNELNELKENNMENEKTKKEIEKIKKMILEGKIIICGTDTLYGLCANVLDENAVK 60 Query: 47 RLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP 106 ++Y++KKR P+ + D ++K+A V+ +S + F PG LT++L T Sbjct: 61 KVYKLKKRDLNKPISIFLKDKEDIEKYAYVNEISKKIIDKFLPGALTIILKKKDTIP--- 117 Query: 107 LSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLI 166 + + R+P + E PL SAN SG+ T+VK +S + K + LI Sbjct: 118 -NIVSKDYIGIRIPDSEIIR--ELSIVPLTATSANLSGEKPPTSVKE-ISDELRKNVDLI 173 Query: 167 IDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRA 205 ID G+ K STI+ + + + ++R G + + +K+ Sbjct: 174 IDTGVCKYKTPSTIIKILNDN-IELIREGAIPFDKIKKI 211 >gi|221194923|ref|ZP_03567979.1| Sua5/YciO/YrdC/YwlC family protein [Atopobium rimae ATCC 49626] gi|221184826|gb|EEE17217.1| Sua5/YciO/YrdC/YwlC family protein [Atopobium rimae ATCC 49626] Length = 217 Score = 159 bits (402), Expect = 7e-37, Method: Composition-based stats. Identities = 61/204 (29%), Positives = 90/204 (44%), Gaps = 6/204 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPT-AIRRLYEIKKRPAMNPLICHVSDI 67 S + +A E AG + +PT++VYG+ + + R++ IK R L V Sbjct: 14 SAVIAQAVEVARAGGVLIVPTDSVYGIGAAAFSNNPGHERIFTIKHRDRTQTLPWLVGKK 73 Query: 68 SMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 S ++A P + L K +WPG LTLV+ T + N T R+P Sbjct: 74 SDFDRYAKDAPAWAYRLVKAYWPGALTLVVKAADTVPDEYVLPQNH-TIALRMPASKLVC 132 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 ++I G PLA SAN G S + K + + LI+DGG + + + STIV+ Sbjct: 133 EIINGLGVPLATTSANIHGNPSAVSEKDV-EQELIDCSDLILDGGPAPLAVASTIVDCTS 191 Query: 186 EKKVRILRPGGLEIETLKRAISVE 209 K ILR G + E L E Sbjct: 192 -KTPCILREGAIPTEALLATAGFE 214 >gi|269213846|ref|ZP_05982985.2| Sua5/YciO/YrdC/YwlC family protein [Neisseria cinerea ATCC 14685] gi|269145185|gb|EEZ71603.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria cinerea ATCC 14685] Length = 213 Score = 159 bits (402), Expect = 7e-37, Method: Composition-based stats. Identities = 40/189 (21%), Positives = 77/189 (40%), Gaps = 5/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E ++ G + PT++ Y L + A+ R+ I+K + L +D+S Sbjct: 21 ERLIKQAVEIINQGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDQKHHLTLVCADLS 80 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A +D + K PGP T +L L KT R+P + L Sbjct: 81 ELGSYAKIDNVQFRQLKAATPGPYTCILQATKDVPARTL-HPKRKTIGLRIPDNAIAQAL 139 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL + + + + + L+IDGG +T++++ Sbjct: 140 LEELGEPLLSCTLMLPEDGEPLTDPYEIRDRLEHAVDLVIDGGWCGTD-PTTVIDMTDGT 198 Query: 188 KVRILRPGG 196 ++ +R G Sbjct: 199 EL--VRQGC 205 >gi|50122916|ref|YP_052083.1| putative DNA topoisomerase [Pectobacterium atrosepticum SCRI1043] gi|49613442|emb|CAG76893.1| putative DNA topoisomerase [Pectobacterium atrosepticum SCRI1043] Length = 372 Score = 159 bits (402), Expect = 7e-37, Method: Composition-based stats. Identities = 52/176 (29%), Positives = 76/176 (43%), Gaps = 8/176 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L IA PTE V+GL D + A+ RL +K+RP LI ++ S + + + Sbjct: 199 LHNEQVIAYPTEAVFGLGCDPDSEVAVNRLLALKQRPWQKGLILIAANFSQLVPYINDSA 258 Query: 79 LSLH---LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134 LS + WPGP+T VL TT T + RV K+L + YG P Sbjct: 259 LSDEQKAMMFSTWPGPVTWVLPAKPTTPQ--WLTGQFSSLAVRVSDHPLVKELCQHYGKP 316 Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 L SAN SGQ + + S + P ++ G + S I +V + +R Sbjct: 317 LVSTSANLSGQPPCRTAQEV-SLQFGGDFP-VLVGDVGGRMNPSEIRDVLTGELIR 370 >gi|154705971|ref|YP_001425408.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii Dugway 5J108-111] gi|212277672|sp|A9KH21|RIMN_COXBN RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|154355257|gb|ABS76719.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii Dugway 5J108-111] Length = 186 Score = 159 bits (402), Expect = 7e-37, Method: Composition-based stats. Identities = 53/185 (28%), Positives = 79/185 (42%), Gaps = 5/185 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ A + L G IA PTE VYGL D N A+ +L IKKR I S+ Sbjct: 5 TQSINDAVKCLRQGGVIAYPTEAVYGLGCDPFNHDAVAQLLTIKKRSIKKGFILIASEWK 64 Query: 69 MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK- 126 V+ +DP +L WPGP T ++ + T T RV K Sbjct: 65 QVEPLTEPIDPKALARVFDTWPGPFTWTFP--ASKEAPHWITGQHSTIAIRVTAHPLAKL 122 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L + + PL SAN+ G I +VK IL +I I++G + + I + Sbjct: 123 LCQRFAGPLISSSANQEGGPPIRDVK-ILRLVFGNKIDKILEGPLGPTHRPTPIRDAITG 181 Query: 187 KKVRI 191 + +R+ Sbjct: 182 EILRL 186 >gi|268597262|ref|ZP_06131429.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268551050|gb|EEZ46069.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] Length = 234 Score = 159 bits (402), Expect = 7e-37, Method: Composition-based stats. Identities = 40/188 (21%), Positives = 77/188 (40%), Gaps = 5/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E ++ G + PT++ Y L + A+ R+ I+K + L +D+S Sbjct: 42 ERLIKQAVEIINQGGVVVYPTDSCYALGCKLGDKVAMERILSIRKIDLKHHLTLMCADLS 101 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A +D + K PGP T +L L KT R+P + L Sbjct: 102 ELGTYAKIDNVQFRQLKAATPGPYTFILQATKDAPARAL-HPKRKTIGLRIPDNAVAQAL 160 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL + + + + + L+IDGG +T++++ Sbjct: 161 LEELGGPLLSCTLMLPEDGEPLTDPYEIRERLEHAVDLVIDGGWCGTD-PTTVIDMTDGT 219 Query: 188 KVRILRPG 195 ++ +R G Sbjct: 220 EL--VRRG 225 >gi|269140536|ref|YP_003297237.1| putative ribosome maturation factor [Edwardsiella tarda EIB202] gi|267986197|gb|ACY86026.1| putative ribosome maturation factor [Edwardsiella tarda EIB202] gi|304560321|gb|ADM42985.1| hypothetical protein ETAF_2883 [Edwardsiella tarda FL6-60] Length = 189 Score = 159 bits (402), Expect = 8e-37, Method: Composition-based stats. Identities = 49/186 (26%), Positives = 78/186 (41%), Gaps = 8/186 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S++L A L IA PTE V+GL D + +A++ L ++K+RP LI +D Sbjct: 6 SDSLAAAVAALRQQRVIAYPTEAVFGLGCDPDSESAVQTLLDLKQRPWDKGLILIAADYQ 65 Query: 69 MVKKHASVDPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-T 124 + + + L A +F WPGP+T V+ + D T T RV Sbjct: 66 QLLPYVCDEALQGERRAAVFSRWPGPVTWVMPARA--DTPRWLTGRFSTLAVRVSAHPQV 123 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 ++L +YG PL SAN SG + P +++ + S I + Sbjct: 124 QQLCRSYGKPLVSTSANLSGLPPCRTAAEV-RQQFGSAFP-VLNAPVGGRQNPSEIRDAL 181 Query: 185 CEKKVR 190 + +R Sbjct: 182 SGELLR 187 >gi|30064604|ref|NP_838775.1| putative ribosome maturation factor [Shigella flexneri 2a str. 2457T] gi|212288262|sp|Q0T019|RIMN_SHIF8 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|30042863|gb|AAP18586.1| hypothetical protein S3538 [Shigella flexneri 2a str. 2457T] gi|313648795|gb|EFS13235.1| ribosome maturation factor [Shigella flexneri 2a str. 2457T] gi|332754003|gb|EGJ84376.1| ribosome maturation factor [Shigella flexneri 2747-71] gi|332766533|gb|EGJ96740.1| protein involved in synthesis of threonylcarbamoyladenosine-modified tRNA [Shigella flexneri 2930-71] gi|332998296|gb|EGK17897.1| ribosome maturation factor [Shigella flexneri VA-6] gi|333012315|gb|EGK31696.1| ribosome maturation factor [Shigella flexneri K-304] gi|333014510|gb|EGK33858.1| ribosome maturation factor [Shigella flexneri K-227] Length = 190 Score = 159 bits (402), Expect = 8e-37, Method: Composition-based stats. Identities = 49/185 (26%), Positives = 74/185 (40%), Gaps = 8/185 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +A+ A + L+ IA PTE V+G+ D + TA+ RL E+K+RP LI ++ Sbjct: 8 DAIAAAIDVLNEKRVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQ 67 Query: 70 VKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 +K + + WPGP+T V +TT T + RV Sbjct: 68 LKPYIDDTMLTDVQRETIFSCWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVV 125 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 L + YG PL SAN SG V + + P ++ G S I + Sbjct: 126 ALCQAYGKPLVSTSANLSGLPPCRTVDEV-RAQFGAAFP-VVPGETGGRLNPSEIRDALT 183 Query: 186 EKKVR 190 + R Sbjct: 184 GELFR 188 >gi|322389537|ref|ZP_08063088.1| Sua5/YciO/YrdC family protein [Streptococcus parasanguinis ATCC 903] gi|321143812|gb|EFX39239.1| Sua5/YciO/YrdC family protein [Streptococcus parasanguinis ATCC 903] Length = 203 Score = 159 bits (402), Expect = 8e-37, Method: Composition-based stats. Identities = 69/205 (33%), Positives = 103/205 (50%), Gaps = 11/205 (5%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L+AG + +PTETVYG+ + + A+ +YE+K+RP L +V+ V+ ++ P Sbjct: 8 LEAGRAVILPTETVYGIFAKALDQEAVDYIYELKRRPREKALNLNVAGEEDVRIYSKDQP 67 Query: 79 LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLA 136 L L F PGPLT++L + + + L T FR+P T +LI YG PL Sbjct: 68 SYLTKLIDSFLPGPLTIILQ--ANEKVPGWIHSGLDTVGFRIPAHPKTLELIRKYG-PLV 124 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SG S T + I+S + +P I D G +STI+++ K RILR G Sbjct: 125 GPSANLSGHASGTKYQAIVSE-FDQVVPGIEDDDF-LTGQDSTILDISGSK-ARILRQGS 181 Query: 197 LEIETLKRAISVELEYCVDETSTPQ 221 + L ++ E +E PQ Sbjct: 182 ITKADL---LAQVPELSFEEDELPQ 203 >gi|82545645|ref|YP_409592.1| ribosome maturation factor [Shigella boydii Sb227] gi|123558527|sp|Q31VZ4|RIMN_SHIBS RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|81247056|gb|ABB67764.1| conserved hypothetical protein [Shigella boydii Sb227] gi|320187004|gb|EFW61716.1| putative ribosome maturation factor [Shigella flexneri CDC 796-83] gi|332090353|gb|EGI95451.1| ribosome maturation factor [Shigella boydii 3594-74] Length = 190 Score = 159 bits (402), Expect = 8e-37, Method: Composition-based stats. Identities = 50/185 (27%), Positives = 77/185 (41%), Gaps = 8/185 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +A+ A + L+ IA PTE V+G+ D + TA+ RL E+K+RP LI ++ Sbjct: 8 DAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQ 67 Query: 70 VKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 +K + L+ + WPGP+T V +TT T + RV Sbjct: 68 LKPYIDDTMLTDAQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVV 125 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 L + YG PL SAN SG V + + P+++ G S I + Sbjct: 126 ALCQAYGKPLVSTSANLSGLPPCRTVDEV-RAQFGAAFPVVL-GETGGRLNPSEIRDALT 183 Query: 186 EKKVR 190 + R Sbjct: 184 GELFR 188 >gi|319795295|ref|YP_004156935.1| sua5/ycio/yrdc/ywlc family protein [Variovorax paradoxus EPS] gi|315597758|gb|ADU38824.1| Sua5/YciO/YrdC/YwlC family protein [Variovorax paradoxus EPS] Length = 211 Score = 159 bits (402), Expect = 8e-37, Method: Composition-based stats. Identities = 47/193 (24%), Positives = 80/193 (41%), Gaps = 7/193 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 L++A L G +A+PT++ Y LA + A+ +L I++ + L D+S Sbjct: 14 QRLLKQAVTLLARGEIVAVPTDSSYALACHLDDKDAVDQLRRIRQVDEKHHLTLLCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD L K PGP T +L+ +S KT RVP +L Sbjct: 74 ELANYARVDNKQYRLLKAATPGPYTFLLEATKEVP-RRVSHPQRKTIGLRVPDHKVLLEL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV---- 183 + +G PL + G+ N + K+I +ID G +T+V++ Sbjct: 133 LALHGAPLLATTLIAPGETEALNDAQTIRERFEKQIGAVIDAGACPS-QPTTVVDLTPMG 191 Query: 184 QCEKKVRILRPGG 196 + V + + G Sbjct: 192 TGDDPVVVRQGRG 204 >gi|301614718|ref|XP_002936824.1| PREDICTED: uncharacterized protein ywlC-like [Xenopus (Silurana) tropicalis] Length = 243 Score = 159 bits (402), Expect = 8e-37, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 97/205 (47%), Gaps = 9/205 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++LR LD G IPT+TVY LA ++P AI R+Y IK+RP+ P+ +S++ Sbjct: 29 TSSLRTIANILDNGGVCGIPTDTVYALAASCKHPEAINRIYSIKERPSEKPICICISNLD 88 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPL--STANLKTACFRVPCG 122 ++ + PL L +PG ++ ++ + L + P + RVP Sbjct: 89 QLRVISPPFSPLLWRFMDLVYPGGISCIVQKGEWLKKLGVGPAYERVGTNDSIMIRVPDH 148 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 + PLAI SAN SG+ T+ +++ + ++ ++ G S + ST+VN Sbjct: 149 TVTAHLTDMTGPLAITSANPSGESDSTHHDMVIT-RLSDKLDAVLCDGFSNELVGSTVVN 207 Query: 183 VQ--CEKKVRILRPGGLEIETLKRA 205 E ++ILR G + + + Sbjct: 208 CTKIDEGTIKILREGCVPTTKIMQL 232 >gi|298252615|ref|ZP_06976409.1| putative translation factor SUA5 [Gardnerella vaginalis 5-1] gi|297532979|gb|EFH71863.1| putative translation factor SUA5 [Gardnerella vaginalis 5-1] Length = 210 Score = 159 bits (402), Expect = 8e-37, Method: Composition-based stats. Identities = 59/209 (28%), Positives = 97/209 (46%), Gaps = 17/209 (8%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A + ++ G I +PT+TVYG+A D N A+ ++YE+K+RP L +S++ ++K Sbjct: 2 AAQIINEGGVIVVPTDTVYGVACDPFNEAAVAKIYELKRRPRTKALQILMSEVGDLEKLG 61 Query: 75 SVDPLSLHLA-KLFWPGPLTLVLDLLSTTDIHPLST-------------ANLKTACFRVP 120 P L + K F PG + + + L+T T RVP Sbjct: 62 LYLPSPLDILGKKFLPGGYSPIARAKKDSVASNLATLCKTNETDAQNDAKTQATQGVRVP 121 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 I PLA SANRSG S +V+ ++ EIPL ++ G ++ + ST+ Sbjct: 122 DCPELMQILRVTGPLAASSANRSGNESADSVEEAFAA-FGNEIPLYLNAGPTRSHVASTV 180 Query: 181 V--NVQCEKKVRILRPGGLEIETLKRAIS 207 V + + + ILR G + ++ A+S Sbjct: 181 VGADSSDKDGIVILREGVISESEIRNALS 209 >gi|254483308|ref|ZP_05096539.1| putative yrdC domain protein [marine gamma proteobacterium HTCC2148] gi|214036403|gb|EEB77079.1| putative yrdC domain protein [marine gamma proteobacterium HTCC2148] Length = 188 Score = 158 bits (401), Expect = 8e-37, Method: Composition-based stats. Identities = 48/191 (25%), Positives = 73/191 (38%), Gaps = 6/191 (3%) Query: 4 MSITDSNA-LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 M T S+ L A L +A PTE V+GL+ D + A+ RL IK R LI Sbjct: 1 MPFTPSSLRLSAAVAALRREGVVACPTEAVWGLSCDPDSEQAVSRLLAIKGRSVDKGLIL 60 Query: 63 HVSDISMVK-KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 + + + A + WPGP T ++ + P +T RV Sbjct: 61 VAASVEQLGFLLADLSQAQKQQLSASWPGPNTWLVPHQ--QRVQPWVHGRFETVAVRVSQ 118 Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 + L E +G PL SAN +G +L + ++ G + STI Sbjct: 119 HPVVRSLCEAWGGPLVSTSANPAGAQPPRAGFQVLR-YFGGSLDGMLPGQVGDAQTPSTI 177 Query: 181 VNVQCEKKVRI 191 ++ + VR Sbjct: 178 RDLASGELVRA 188 >gi|242011385|ref|XP_002426431.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212510536|gb|EEB13693.1| conserved hypothetical protein [Pediculus humanus corporis] Length = 244 Score = 158 bits (401), Expect = 9e-37, Method: Composition-based stats. Identities = 61/198 (30%), Positives = 94/198 (47%), Gaps = 9/198 (4%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 I+SI + +A A L G IAIPT+T+YG+A ++N +++LYEIKKR PL Sbjct: 18 IISILEVSAASTAANLLFEGKVIAIPTDTIYGIAASTQNNYGLKKLYEIKKRDLNKPLSI 77 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC- 121 VSD S +K L+ L + PGP+T+VL ++ N R+P Sbjct: 78 CVSDTSEIKLWGETSHLNERLLEDLLPGPVTIVLKRKG--LLNSFVNPNTDLIGIRIPNT 135 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI----SKIGLE 177 F + L P+A+ SAN S + S + + + ++ I DGG+ Sbjct: 136 NFVQALSRLCTVPIALTSANISFEQSPIEINDFIH--LWPKLDAIFDGGVISNSPLQRAG 193 Query: 178 STIVNVQCEKKVRILRPG 195 ST+V++ I+R G Sbjct: 194 STVVDLSEPGHYNIIREG 211 >gi|262273073|ref|ZP_06050890.1| YrdC family protein [Grimontia hollisae CIP 101886] gi|262222829|gb|EEY74137.1| YrdC family protein [Grimontia hollisae CIP 101886] Length = 185 Score = 158 bits (401), Expect = 9e-37, Method: Composition-based stats. Identities = 48/183 (26%), Positives = 83/183 (45%), Gaps = 7/183 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + L G IA PTE V+G+ D +P A++ L ++K R LI ++ S ++ Sbjct: 4 VEQCVSALARGEVIAYPTEGVFGVGCDPDSPQAVQALLDVKARDKAKGLILIAAEFSQLE 63 Query: 72 KHASVDPLSLHLAK---LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127 + D LS + WPGP+T V+ T T T RV + L Sbjct: 64 GYIDFDSLSDEVKADVLATWPGPVTWVMPAGKKTT--DWVTGQFDTVAVRVSDHPDVRAL 121 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +YG P+ SAN SG+ +V+ ++ + + +P +++G I + I + + K Sbjct: 122 CLSYGKPITSTSANLSGEAPCRSVEEVVK-QLGERVPNVLEGKIGGRDKPTEIRDARSGK 180 Query: 188 KVR 190 +R Sbjct: 181 VLR 183 >gi|261879276|ref|ZP_06005703.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella bergensis DSM 17361] gi|270334108|gb|EFA44894.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella bergensis DSM 17361] Length = 188 Score = 158 bits (401), Expect = 9e-37, Method: Composition-based stats. Identities = 48/192 (25%), Positives = 89/192 (46%), Gaps = 8/192 (4%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 +T ++ A E L G I PT+TV+G+ D+ N A+ ++Y IKKR LIC V Sbjct: 1 MTREEDIKNAVEVLKQGGVILYPTDTVWGIGCDATNTEAVAKVYRIKKRDDSKALICLVD 60 Query: 66 DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GF 123 + ++++ +V ++ L + P T++LD ++ P A + R+ F Sbjct: 61 SDARLQRYVRNVPAIAWDLLDVA-DKPTTVILD--GAVNLAPNLIAEDGSIALRITSEPF 117 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--GLESTIV 181 +K+L + L SAN SG+ N K +S + + + ++ S+I+ Sbjct: 118 SKELCYRFQKALVSTSANISGEPPAQNYKD-ISEELLNSVDYVCYSRRNEHKPHTPSSII 176 Query: 182 NVQCEKKVRILR 193 + +V ++R Sbjct: 177 KLGPSGEVTVIR 188 >gi|218768797|ref|YP_002343309.1| hypothetical protein NMA2049 [Neisseria meningitidis Z2491] gi|121052805|emb|CAM09152.1| conserved hypothetical protein [Neisseria meningitidis Z2491] gi|319411036|emb|CBY91436.1| conserved hypothetical protein [Neisseria meningitidis WUE 2594] Length = 206 Score = 158 bits (401), Expect = 9e-37, Method: Composition-based stats. Identities = 40/189 (21%), Positives = 76/189 (40%), Gaps = 5/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E ++ G + PT++ Y L + A+ R+ I+K + L +D+S Sbjct: 14 ERLIKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A +D + K PGP T +L L KT R+P + L Sbjct: 74 ELGTYAKIDNVQFRQLKAATPGPYTFILQATKDVPARTL-HPKRKTIGLRIPDNAIAQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + + + + + L+IDGG +T+V++ Sbjct: 133 LGELGEPLLSCTLMLPEDGEPLTDPYEIRECLEHAVDLVIDGGWCGT-EPTTVVDMTDGT 191 Query: 188 KVRILRPGG 196 ++ +R G Sbjct: 192 EL--VRQGC 198 >gi|300691879|ref|YP_003752874.1| hypothetical protein RPSI07_2235 [Ralstonia solanacearum PSI07] gi|299078939|emb|CBJ51599.1| conserved protein of unknown function, translation factor domain (SUA5) [Ralstonia solanacearum PSI07] Length = 207 Score = 158 bits (401), Expect = 9e-37, Method: Composition-based stats. Identities = 49/197 (24%), Positives = 86/197 (43%), Gaps = 5/197 (2%) Query: 1 MQIMSITDS-NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 QI T +R+A E + AG +A+PT++ Y LA + A+ RL ++ + Sbjct: 5 FQIHPTTPQGRLIRQAAEIIRAGGLVALPTDSCYALACHLDDKAAVERLRRVRGIDEKHH 64 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 L D+S + A VD + K PGP +L+ LS + KT RV Sbjct: 65 LTLMCRDLSELATFARVDNRQYRVVKTATPGPFVFLLEATKEVP-RRLSHPSRKTIGLRV 123 Query: 120 PCGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P L+ G PL + G + N + + + +++ L+IDGG + + Sbjct: 124 PDHPIPLALMAELGEPLLSATLQLPGDDAPLNEAETIRARLERQLELVIDGGPAPA-EPT 182 Query: 179 TIVNVQCEKKVRILRPG 195 T++++ + ++R G Sbjct: 183 TVIDLTGGEP-ELVRKG 198 >gi|307250416|ref|ZP_07532363.1| hypothetical protein appser4_11970 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306857545|gb|EFM89654.1| hypothetical protein appser4_11970 [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 205 Score = 158 bits (401), Expect = 9e-37, Method: Composition-based stats. Identities = 51/192 (26%), Positives = 76/192 (39%), Gaps = 5/192 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A E + G I PT++ Y L A+ R+ I+K P + SD+S Sbjct: 14 ARLINQAVEIIKNGGVIIYPTDSGYALGCAIGEKHAMDRIVAIRKLPENHNFTLVCSDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A V S L K P P T +L +T D+ KT RVP L Sbjct: 74 ELSTYALVTNQSYRLIKNNTPNPYTFILP--ATKDVPRRLMTKRKTIGIRVPDNAIALAL 131 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I G P+ S + + + + LII GG +G E T V E Sbjct: 132 IAALGEPILSCSLMLPDTEITESDPDEIREHLEHRVDLIIHGGY--LGQEPTTVIDLTED 189 Query: 188 KVRILRPGGLEI 199 +I+R G +I Sbjct: 190 APKIIREGSGDI 201 >gi|76801361|ref|YP_326369.1| hypothetical protein NP1420A [Natronomonas pharaonis DSM 2160] gi|76557226|emb|CAI48801.1| conserved hypothetical protein [Natronomonas pharaonis DSM 2160] Length = 194 Score = 158 bits (401), Expect = 9e-37, Method: Composition-based stats. Identities = 50/197 (25%), Positives = 91/197 (46%), Gaps = 9/197 (4%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 L A L G + PTETVYGLA D+ +P A++R++E K R P+ + ++ Sbjct: 5 DLTDAVAALRRGDLVVYPTETVYGLAADALDPEAVKRVFEAKGRDRDKPVSMALPSVAAA 64 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130 ++ + + F PGP+T++L+ + + A RVP + + Sbjct: 65 AEYVTFSDRERAFCEAFLPGPVTVLLER--GDRVPDVLVAGRDRVGLRVPAHDIARDLAR 122 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 P+ SAN SG S + ++I + +++DGG + G EST+V++ + VR Sbjct: 123 RVGPITATSANVSGNPSARR-PEAVDATIRER-AVVVDGGETP-GTESTVVDIAADDIVR 179 Query: 191 ILRPGGLEIETLKRAIS 207 G + + + ++ Sbjct: 180 ----RGAQADDIDAWLT 192 >gi|300721401|ref|YP_003710672.1| putative RNA-binding protein [Xenorhabdus nematophila ATCC 19061] gi|297627889|emb|CBJ88435.1| putative RNA-binding protein with unique protein fold, with YrdC/RibB domain [Xenorhabdus nematophila ATCC 19061] Length = 189 Score = 158 bits (401), Expect = 9e-37, Method: Composition-based stats. Identities = 55/191 (28%), Positives = 74/191 (38%), Gaps = 8/191 (4%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 MS S A L G IA PTE V+GL D + A++ L +K RP LI Sbjct: 1 MSNEISPAFDSIVTALKEGKVIAYPTEAVFGLGCDPDSENAVQELLALKNRPWEKGLILI 60 Query: 64 VSDISMVKKHASVDPLSLHLAK---LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 + + + LS + FWPGP+T V+ T T T RV Sbjct: 61 ADNYERLCSYIDDVQLSDEQKETIFSFWPGPVTWVIPAKKIT--PKWLTGKFSTLAVRVT 118 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 K+L YG PL SAN SG +V+ + IP ++ G + S Sbjct: 119 DHPLVKQLCSLYGKPLVSTSANLSGLEPCRSVEEV-RLQFGNRIP-VLSGEVGGRKNPSE 176 Query: 180 IVNVQCEKKVR 190 I + K R Sbjct: 177 IRDALTGKLYR 187 >gi|134046516|ref|YP_001098001.1| translation factor SUA5 [Methanococcus maripaludis C5] gi|132664141|gb|ABO35787.1| translation factor SUA5 [Methanococcus maripaludis C5] Length = 205 Score = 158 bits (401), Expect = 9e-37, Method: Composition-based stats. Identities = 58/213 (27%), Positives = 105/213 (49%), Gaps = 14/213 (6%) Query: 1 MQIMSITDSN------ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR 54 M+ I++SN + A + + G I T+T+YGL+ ++ + AI R+Y IK+R Sbjct: 1 MKTFEISESNLKNCNEEIETAKKMILGGKIILCGTDTLYGLSTNALDKKAIERIYSIKER 60 Query: 55 PAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT 114 P+ + + ++ + V + + + F PGP+T++L DI P Sbjct: 61 DPNKPISISLGEKKQIENYVYVGETAKKIIEKFMPGPITVIL---KKKDIIPDILGKDD- 116 Query: 115 ACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174 R+P + I PL SAN SG+ + +++ + S I +++ LIID G SK Sbjct: 117 VGVRIPDNDVIRKI--AIVPLTTTSANISGKTAPISLEEV-DSVIKEKVDLIIDTGPSKY 173 Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAIS 207 ++STIV V K+ ++R G + E + +++ Sbjct: 174 KVQSTIVKVIG-GKIELIREGKIPFEEILKSVK 205 >gi|161830974|ref|YP_001595974.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii RSA 331] gi|212277673|sp|A9N9G8|RIMN_COXBR RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|161762841|gb|ABX78483.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii RSA 331] Length = 186 Score = 158 bits (401), Expect = 1e-36, Method: Composition-based stats. Identities = 52/185 (28%), Positives = 79/185 (42%), Gaps = 5/185 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ A + L G IA PTE VYGL D N A+ +L IKKR I S+ Sbjct: 5 TQSINDAVKCLRQGGVIAYPTEAVYGLGCDPFNHDAVAQLLTIKKRSIKKGFILIASEWK 64 Query: 69 MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK- 126 V+ +DP +L WPGP T ++ + T T RV K Sbjct: 65 QVEPLTEPIDPKALARVFDTWPGPFTWTFP--ASKEAPHWITGQHSTIAIRVTAHPLAKL 122 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L + + PL SAN+ G+ I +VK IL +I ++G + + I + Sbjct: 123 LCQRFAGPLISSSANQEGEPPIRDVK-ILRLVFGNKIDKTLEGPLGPTHRPTPIRDAITG 181 Query: 187 KKVRI 191 + +R+ Sbjct: 182 EILRL 186 >gi|150399931|ref|YP_001323698.1| Sua5/YciO/YrdC/YwlC family protein [Methanococcus vannielii SB] gi|150012634|gb|ABR55086.1| Sua5/YciO/YrdC/YwlC family protein [Methanococcus vannielii SB] Length = 205 Score = 158 bits (401), Expect = 1e-36, Method: Composition-based stats. Identities = 58/212 (27%), Positives = 103/212 (48%), Gaps = 14/212 (6%) Query: 1 MQIMSITDSN------ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR 54 M I++ N + + + G I T+T+YGL+ ++ + AI ++Y+IKKR Sbjct: 1 MITFKISEDNLNKFEKEIEIVKKVVLEGGVILCGTDTLYGLSTNALDENAIEKIYKIKKR 60 Query: 55 PAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT 114 P+ + + V+K+ VD + L F PGP+T++L DI P Sbjct: 61 DPNKPISISLGEKYQVEKYVYVDDTARKLIDKFMPGPITIIL---KKKDILPDILGKND- 116 Query: 115 ACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174 R+P + I PL SAN SG++S ++ + + +++ LIID G K Sbjct: 117 VGVRIPDNDVIRKI--SVVPLTTTSANISGEVSPIALEEV-DPKVKEKVDLIIDSGTCKH 173 Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAI 206 ++STI+ V + K+ ++R G + E + +A+ Sbjct: 174 RMQSTIIKVI-DGKIELIREGKIPFEDILKAL 204 >gi|291614092|ref|YP_003524249.1| Sua5/YciO/YrdC/YwlC family protein [Sideroxydans lithotrophicus ES-1] gi|291584204|gb|ADE11862.1| Sua5/YciO/YrdC/YwlC family protein [Sideroxydans lithotrophicus ES-1] Length = 209 Score = 158 bits (401), Expect = 1e-36, Method: Composition-based stats. Identities = 42/200 (21%), Positives = 76/200 (38%), Gaps = 7/200 (3%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 Q +I N +++A E L G I PT++ Y L + A+ R+ +I+ Sbjct: 3 QFFTIHPENPQPRLIKQAAEMLRNGAVIVYPTDSGYALGCHLDDKDAVTRIRQIRGLDDK 62 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 + L D+S + +A VD L K PG T +L+ L T Sbjct: 63 HFLTLMCRDLSELSHYARVDNAQFRLLKNNTPGSYTFILEATREVP-RRLQHPKRSTVGL 121 Query: 118 RVPCGFTKKLIETYGHPLAIPS-ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P + + S + ++ + + + L+I+GG IG Sbjct: 122 RIPDHPIALALLEELGEPLLSSTLILPDEEQPLTDVDVIREQLERLVELVIEGGTVGIG- 180 Query: 177 ESTIVNVQCEKKVRILRPGG 196 +T++++ V + R G Sbjct: 181 PTTVIDLTDATPVLVRRGIG 200 >gi|307824289|ref|ZP_07654515.1| Sua5/YciO/YrdC/YwlC family protein [Methylobacter tundripaludum SV96] gi|307734669|gb|EFO05520.1| Sua5/YciO/YrdC/YwlC family protein [Methylobacter tundripaludum SV96] Length = 207 Score = 158 bits (401), Expect = 1e-36, Method: Composition-based stats. Identities = 41/185 (22%), Positives = 75/185 (40%), Gaps = 4/185 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + + G I PT++ Y +A + A+ ++ I++ + D++ V Sbjct: 17 IHRAVDIIRKGGVIVYPTDSSYAIACQIGDKQALDKIRRIRQLDDKHNFTLVCKDLTQVS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI-ET 130 + + L K PG T +L+ L KT RVP +L+ + Sbjct: 77 MFTKISNDAYRLIKALTPGAFTFILEATREVP-RRLQHPKKKTVGIRVPDHPVAQLLVQE 135 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G PL + G+ + + + + E+ LIID GI + +TI+ V Sbjct: 136 LGEPLFSSTLMLPGEDEALTDPYEIRNKLEHELDLIIDAGIIEFEQ-TTIIEFSSSG-VE 193 Query: 191 ILRPG 195 I+R G Sbjct: 194 IIRQG 198 >gi|238783201|ref|ZP_04627227.1| Ribosomal modification protein RimN [Yersinia bercovieri ATCC 43970] gi|238715997|gb|EEQ07983.1| Ribosomal modification protein RimN [Yersinia bercovieri ATCC 43970] Length = 188 Score = 158 bits (401), Expect = 1e-36, Method: Composition-based stats. Identities = 46/186 (24%), Positives = 72/186 (38%), Gaps = 8/186 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S+ L L IA PTE V+GL D + A+ L +K+RP LI ++ Sbjct: 5 SDVLADVLRALQQEEVIAYPTEAVFGLGCDPDSEKAVNALLALKQRPWQKGLILIAANYE 64 Query: 69 MVKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 +K + L WPG +T V+ + T T + + RV Sbjct: 65 QLKPYIDDSTLSDLQRETIFSCWPGAVTWVIPARAET--PRWLTGSFDSLAVRVSDHPLV 122 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 ++L YG PL SAN SG+ + + +P ++ G + S I + Sbjct: 123 QQLCLQYGKPLVSTSANLSGREPCRTDEEV-RIQFGPSLP-VLFGKVGGRLNPSEIRDAI 180 Query: 185 CEKKVR 190 K+ R Sbjct: 181 TGKQFR 186 >gi|323345671|ref|ZP_08085894.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella oralis ATCC 33269] gi|323093785|gb|EFZ36363.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella oralis ATCC 33269] Length = 189 Score = 158 bits (401), Expect = 1e-36, Method: Composition-based stats. Identities = 50/192 (26%), Positives = 92/192 (47%), Gaps = 8/192 (4%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV- 64 +T + ++ A E + G I PT+TV+G+ D+ N A+ ++Y IK+R LIC V Sbjct: 1 MTQAEDIKNAVEIMKKGGVILYPTDTVWGIGCDATNAEAVAKVYRIKQRDDSKALICLVD 60 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GF 123 SD+ M + +V ++ + +L P T++LD ++ P A + R+ F Sbjct: 61 SDVRMQRYVRNVPNVAWDIMELAT-KPTTVILD--DAVNLAPNLIAEDGSIAMRITKEPF 117 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--GLESTIV 181 + +L + PL SAN SGQ + +N + +S + + + + S+I+ Sbjct: 118 SHELCYRFQKPLVSTSANISGQPAASNYRD-ISQELLDAVDYVCWSRRQEHKPHTPSSII 176 Query: 182 NVQCEKKVRILR 193 + +V I+R Sbjct: 177 KLNKNGEVSIIR 188 >gi|15791118|ref|NP_280942.1| hypothetical protein VNG2312C [Halobacterium sp. NRC-1] gi|169236871|ref|YP_001690071.1| hypothetical protein OE4244F [Halobacterium salinarum R1] gi|10581723|gb|AAG20422.1| conserved hypothetical protein [Halobacterium sp. NRC-1] gi|167727937|emb|CAP14725.1| conserved hypothetical protein [Halobacterium salinarum R1] Length = 198 Score = 158 bits (401), Expect = 1e-36, Method: Composition-based stats. Identities = 56/185 (30%), Positives = 81/185 (43%), Gaps = 3/185 (1%) Query: 20 DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL 79 G + PTETVYGLA D+ +P AI +E K+RP PL D+ +H +V Sbjct: 15 REGGLVVFPTETVYGLAADALDPDAIEAAFEAKRRPREKPLSFAFPDVEAAVEHVAVGET 74 Query: 80 SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPS 139 F PGP+T+V + + + + T RVP + PL S Sbjct: 75 ERAFMAEFLPGPVTVVCEKRDS--VPDVLTGGRDRVGVRVPDSEVAVALLERVAPLTATS 132 Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEI 199 AN SG+ S+TN L + + ++D G S G ST+V+V + +R G Sbjct: 133 ANVSGEPSVTN-PAALDPAFRARVDAVVDAGESPGGTGSTVVDVARGEILRAGAVGDAVR 191 Query: 200 ETLKR 204 E L Sbjct: 192 EWLAE 196 >gi|83748250|ref|ZP_00945276.1| Sua5/YciO/YrdC/YwlC family protein [Ralstonia solanacearum UW551] gi|207743518|ref|YP_002259910.1| rna-binding protein, yrdc [Ralstonia solanacearum IPO1609] gi|83725091|gb|EAP72243.1| Sua5/YciO/YrdC/YwlC family protein [Ralstonia solanacearum UW551] gi|206594916|emb|CAQ61843.1| rna-binding protein, yrdc [Ralstonia solanacearum IPO1609] Length = 207 Score = 158 bits (401), Expect = 1e-36, Method: Composition-based stats. Identities = 49/197 (24%), Positives = 86/197 (43%), Gaps = 5/197 (2%) Query: 1 MQIMSITDS-NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 QI T +R+A E + AG +A+PT++ Y LA + A+ RL ++ + Sbjct: 5 FQIHPTTPQGRLIRQAAEIIRAGGLVALPTDSCYALACHLDDKAAVERLRRVRGIDEKHH 64 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 L D+S + A VD + K PGP +L+ LS + KT RV Sbjct: 65 LTLMCRDLSELATFARVDNKQYRVVKAATPGPFVFLLEATKEVP-RRLSHPSRKTIGLRV 123 Query: 120 PCGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P L+ G PL + G + N + + + +++ L+IDGG + + Sbjct: 124 PEHPIPLALMAELGEPLLSATLQLPGDDAPLNEAETIRARLERQLELVIDGGPAPA-EPT 182 Query: 179 TIVNVQCEKKVRILRPG 195 T++++ + ++R G Sbjct: 183 TVIDLTGGEP-ELVREG 198 >gi|153876037|ref|ZP_02003559.1| Sua5/YciO/YrdC/YwlC family protein [Beggiatoa sp. PS] gi|152067499|gb|EDN66441.1| Sua5/YciO/YrdC/YwlC family protein [Beggiatoa sp. PS] Length = 184 Score = 158 bits (401), Expect = 1e-36, Method: Composition-based stats. Identities = 50/184 (27%), Positives = 79/184 (42%), Gaps = 9/184 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++A +L G IA PTE VYGL D N A+ L +K+R LI +D S + Sbjct: 6 LKQATRYLKTGGIIAYPTEAVYGLGCDPLNEKAVTCLLALKQRAWQKGLILIAADYSQLS 65 Query: 72 KHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 +DPL+ L + WPGP+T ++ + +++ RV K L Sbjct: 66 PF--LDPLTAILEEQIFATWPGPVTWLIP--AKSNVPQWLRGKSTKLAVRVTAHPIAKAL 121 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + + PL SAN S Q + + + + + I I+ G I + S I + Sbjct: 122 CQYWRGPLVSTSANISHQPPVRTAQKV-RRTFAQRIDYIVPGPIGERQRPSEIRDALTNT 180 Query: 188 KVRI 191 +R Sbjct: 181 VLRF 184 >gi|169634119|ref|YP_001707855.1| hypothetical protein ABSDF2646 [Acinetobacter baumannii SDF] gi|169152911|emb|CAP01952.1| conserved hypothetical protein [Acinetobacter baumannii] Length = 205 Score = 158 bits (401), Expect = 1e-36, Method: Composition-based stats. Identities = 46/196 (23%), Positives = 80/196 (40%), Gaps = 4/196 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A E + AG + PT+ Y + N A+ R+ +I+ + D+S Sbjct: 13 QRLIEQAVERIRAGDVVVYPTDAAYAIGCQIGNKNAMERIAQIRGLGPKHQYAIMCCDLS 72 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD + L K P T +L S L KT R+P + L Sbjct: 73 DIATYAKVDNATYRLLKANTPAITTFILPATSEVP-RRLMHPKKKTIGLRIPSNPICQAL 131 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ G PL + GQ + + + + + K I + IDGG + S IV++ E Sbjct: 132 LKELGGPLLTSTLILPGQEDPLDDPYDIENQLAKRIDVFIDGGFGTLTTTS-IVDLSGEH 190 Query: 188 KVRILRPGGLEIETLK 203 I+R G ++ + Sbjct: 191 P-EIIRHGVGDVSAFE 205 >gi|156937167|ref|YP_001434963.1| translation factor SUA5 [Ignicoccus hospitalis KIN4/I] gi|156566151|gb|ABU81556.1| translation factor SUA5 [Ignicoccus hospitalis KIN4/I] Length = 202 Score = 158 bits (401), Expect = 1e-36, Method: Composition-based stats. Identities = 64/211 (30%), Positives = 102/211 (48%), Gaps = 17/211 (8%) Query: 1 MQIMSITDSNALRKAC----EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56 M+++ +R+A E L++G + IPTETVYG+ + ++YE K+RP Sbjct: 1 MRVLRPRSEEDVRRALIEAKEVLESGGLVIIPTETVYGI---ASKLEFAEKIYEAKRRPR 57 Query: 57 MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 PL + ++ D + LAK FWPGPLT+V+ + + TA Sbjct: 58 DKPLPVQTP-LGRHREVGEFDEAAEALAKAFWPGPLTIVV--KAKPWLPEAVTAGTGKVG 114 Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 RVP + PLA+ SAN SG S + + + + L+ID G + G Sbjct: 115 VRVPAHPFALKLLELVGPLAVTSANLSGGKSPKSAEEVTVEA-----DLLIDMGPVE-GT 168 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAIS 207 ST+V V+ KKV++LR G + E +++ +S Sbjct: 169 PSTVVEVEG-KKVKVLRRGPISEEEIQKVLS 198 >gi|62185126|ref|YP_219911.1| hypothetical protein CAB498 [Chlamydophila abortus S26/3] gi|62148193|emb|CAH63950.1| hypothetical protein CAB498 [Chlamydophila abortus S26/3] Length = 295 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 61/216 (28%), Positives = 103/216 (47%), Gaps = 17/216 (7%) Query: 3 IMSITDSNA-LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 MS TD + L++A ++LD G +A PT+TVYGL V P A ++Y +K R L+ Sbjct: 7 FMSDTDPDVFLQQAADYLDQGKIVAFPTDTVYGLGVALNYPNAEEKIYALKHRDRGKSLV 66 Query: 62 CHVSDISMVKKH--ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 +V+ I ++K ++ +L L++ F PGPLTL++D H + + FR+ Sbjct: 67 VYVNTIEDMEKFSGCTLSTRALKLSQKFLPGPLTLLVD-------HKNPRFHQEKLGFRI 119 Query: 120 -PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 KLI+ G PL SAN S + + + + G GLES Sbjct: 120 LSIPIVNKLIDLAG-PLLGTSANISNFPPAITSNEVTEDF--SQEDICVIPGCCSYGLES 176 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV 214 T+V +++ R G + + ++ + ++E C+ Sbjct: 177 TVV---SADPLKVYREGMVPRQVIEDVVGEKVETCL 209 >gi|307566301|ref|ZP_07628743.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella amnii CRIS 21A-A] gi|307344995|gb|EFN90390.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella amnii CRIS 21A-A] Length = 189 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 44/192 (22%), Positives = 88/192 (45%), Gaps = 8/192 (4%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + + ++KA E + G I PT+TV+G+ D+ N A+ ++Y++K+R LIC V Sbjct: 1 MKREDDIKKAIEVMRQGGIILYPTDTVWGIGCDATNADAVAKVYKLKRRDDSKALICLVD 60 Query: 66 DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GF 123 ++++ +V ++ L + P TL+LD ++ A + R+ F Sbjct: 61 SEDRLQRYVRNVPQVAWQLLEAVT-KPTTLILDN--AVNLASNLIAEDGSIGMRITNEPF 117 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--GLESTIV 181 +K+L + + SAN SG+ + N + I + + + + S+I+ Sbjct: 118 SKELCYRFQKAIVSTSANISGEPAAQNYRDISQEVLNG-VDYVCFARRQEHEPHTPSSII 176 Query: 182 NVQCEKKVRILR 193 + + V I+R Sbjct: 177 KLSKDGTVNIIR 188 >gi|110807131|ref|YP_690651.1| putative ribosome maturation factor [Shigella flexneri 5 str. 8401] gi|110616679|gb|ABF05346.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] gi|281602651|gb|ADA75635.1| putative ribosome maturation factor [Shigella flexneri 2002017] Length = 205 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 49/185 (26%), Positives = 74/185 (40%), Gaps = 8/185 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +A+ A + L+ IA PTE V+G+ D + TA+ RL E+K+RP LI ++ Sbjct: 23 DAIAAAIDVLNEKRVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQ 82 Query: 70 VKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 +K + + WPGP+T V +TT T + RV Sbjct: 83 LKPYIDDTMLTDVQRETIFSCWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVV 140 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 L + YG PL SAN SG V + + P ++ G S I + Sbjct: 141 ALCQAYGKPLVSTSANLSGLPPCRTVDEV-RAQFGAAFP-VVPGETGGRLNPSEIRDALT 198 Query: 186 EKKVR 190 + R Sbjct: 199 GELFR 203 >gi|207722877|ref|YP_002253311.1| rna-binding protein, yrdc [Ralstonia solanacearum MolK2] gi|206588061|emb|CAQ18641.1| rna-binding protein, yrdc [Ralstonia solanacearum MolK2] Length = 207 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 49/197 (24%), Positives = 86/197 (43%), Gaps = 5/197 (2%) Query: 1 MQIMSITDS-NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 QI T +R+A E + AG +A+PT++ Y LA + A+ RL ++ + Sbjct: 5 FQIHPTTPQGRLIRQAAEIIRAGGLVALPTDSCYALACHLDDKAAVERLRRVRGIDEKHH 64 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 L D+S + A VD + K PGP +L+ LS + KT RV Sbjct: 65 LTLMCRDLSELATFARVDNKQYRVVKAATPGPFVFLLEATKEVP-RRLSHPSRKTIGLRV 123 Query: 120 PCGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P L+ G PL + G + N + + + +++ L+IDGG + + Sbjct: 124 PEHPIPLALMAELGEPLLSATLQLPGDDAPLNEAETIRARLERQLELVIDGGPAPA-EPT 182 Query: 179 TIVNVQCEKKVRILRPG 195 T++++ + ++R G Sbjct: 183 TVIDLTGGEP-ELVREG 198 >gi|270264336|ref|ZP_06192602.1| putative ribosome maturation factor [Serratia odorifera 4Rx13] gi|270041472|gb|EFA14570.1| putative ribosome maturation factor [Serratia odorifera 4Rx13] Length = 189 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 49/186 (26%), Positives = 75/186 (40%), Gaps = 8/186 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++ L + L IA PTE V+GL D + A+ L +K+RP LI +D S Sbjct: 6 TSILTPIIDALRNQQVIAYPTEAVFGLGCDPDSGQAVNALLALKQRPWEKGLILIAADYS 65 Query: 69 MVKKHASVDPLSLHL---AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 + + LS WPGP+T V+ T L T + RV Sbjct: 66 QLTSYIDDGALSEQQRAAMFATWPGPVTWVIPARPET--PRLLTGRFNSLAVRVSDHPLV 123 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 ++L +G PL SAN SGQ + ++ P ++ G + S I +V Sbjct: 124 QQLCRQFGKPLVSTSANLSGQEPCRSADEVM-QQFGSAFP-VLAGSVGGRLNPSEIRDVL 181 Query: 185 CEKKVR 190 + +R Sbjct: 182 TGELIR 187 >gi|145300980|ref|YP_001143821.1| Sua5/YciO/YrdC family protein [Aeromonas salmonicida subsp. salmonicida A449] gi|212277666|sp|A4ST51|RIMN_AERS4 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|142853752|gb|ABO92073.1| Sua5/YciO/YrdC family protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 186 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 49/187 (26%), Positives = 78/187 (41%), Gaps = 7/187 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S +A L IA TE V+GL D + A++RL IK+RP LI +D+ Sbjct: 2 STEFEQAVAALHGEGVIAYATEAVFGLGCDPDSELAVQRLLAIKQRPVEKGLILIAADLV 61 Query: 69 MVKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-T 124 ++ + + LS L + WPGP T ++ +TT T T RV Sbjct: 62 QLQDYIDLSQLSGEQLARVEASWPGPFTWIMPARATT--PTWLTGQFDTLAVRVTAHPQV 119 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + L +G PL SAN +G+ V + + ++ I+ G + S I + + Sbjct: 120 QALCRAFGKPLVSTSANLTGEEPARRVTD-IGELLASKLAYILPGEVGGQANPSEIKDAR 178 Query: 185 CEKKVRI 191 +R Sbjct: 179 TGAVIRP 185 >gi|311277763|ref|YP_003939994.1| SUA5/yciO/yrdC domain-containing protein [Enterobacter cloacae SCF1] gi|308746958|gb|ADO46710.1| SUA5/yciO/yrdC domain protein [Enterobacter cloacae SCF1] Length = 190 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 48/186 (25%), Positives = 73/186 (39%), Gaps = 8/186 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ +A L+ IA PTE V+G+ D + TA+ RL E+K+RP LI + Sbjct: 7 TESIARAVAALNNKNVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVEKGLILIAASFE 66 Query: 69 MVKKHASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 +K + P WPGP+T V T T + RV Sbjct: 67 QLKPYIDDSVLTPAQREAVFARWPGPVTFVFPAREQT--PRWLTGKFDSLAVRVTDHPLV 124 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 L E YG PL SAN +G +L + + P+++ G S I + Sbjct: 125 VALCEAYGKPLVSTSANLTGLPPCRTTAEVL-AQFGEHFPVVV-GETGGRLNPSEIRDAL 182 Query: 185 CEKKVR 190 + R Sbjct: 183 TGELFR 188 >gi|238060788|ref|ZP_04605497.1| translation factor SUA5 [Micromonospora sp. ATCC 39149] gi|237882599|gb|EEP71427.1| translation factor SUA5 [Micromonospora sp. ATCC 39149] Length = 221 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 48/208 (23%), Positives = 87/208 (41%), Gaps = 6/208 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + A E + G + +PT+TVYG+ D+ P A++ L + K P + Sbjct: 19 DRGIAAAIEAVKNGELVVLPTDTVYGIGADAFTPYAVKALSDAKGGTRQAP-PVLIGSRH 77 Query: 69 MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 + P + L + FWPG LT+V++ + + + T R+P Sbjct: 78 TLDGLVFTLPRSARDLVEAFWPGALTIVVEHSPS--LSWDLGDDSGTVAVRMPLHPVALE 135 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + P+A+ SAN+ GQ + + + ++ G + STIV++ E Sbjct: 136 VLRETGPMAVASANKVGQPAAVTA-EAAREQLGYTVRAYLEAGPCPDPVPSTIVDLTGEV 194 Query: 188 KVRILRPGGLEIETLKRAISVELEYCVD 215 R+LR G + +E L+ + +E V Sbjct: 195 P-RLLRAGAIPVEKLRDVVPDIVESQVG 221 >gi|320666395|gb|EFX33378.1| tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein [Escherichia coli O157:H7 str. LSU-61] Length = 190 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 49/185 (26%), Positives = 75/185 (40%), Gaps = 8/185 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +A+ A + L+ IA PTE V+G+ D + TA+ RL E+K+RP LI ++ Sbjct: 8 DAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQ 67 Query: 70 VKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 +K + + WPGP+T V +TT T + RV Sbjct: 68 LKPYIDDTMLTDVQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVV 125 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 L + YG PL SAN SG V + + P ++ G + S I + Sbjct: 126 ALCQAYGKPLVSTSANLSGLPPCRTVDEV-RAQFGAAFP-VVPGETGERLNPSEIRDALT 183 Query: 186 EKKVR 190 + R Sbjct: 184 GELFR 188 >gi|239999590|ref|ZP_04719514.1| hypothetical protein Ngon3_08918 [Neisseria gonorrhoeae 35/02] gi|240014764|ref|ZP_04721677.1| hypothetical protein NgonD_08995 [Neisseria gonorrhoeae DGI18] gi|240017213|ref|ZP_04723753.1| hypothetical protein NgonFA_08608 [Neisseria gonorrhoeae FA6140] gi|240113362|ref|ZP_04727852.1| hypothetical protein NgonM_07292 [Neisseria gonorrhoeae MS11] gi|240116290|ref|ZP_04730352.1| hypothetical protein NgonPID1_08647 [Neisseria gonorrhoeae PID18] gi|240118578|ref|ZP_04732640.1| hypothetical protein NgonPID_08974 [Neisseria gonorrhoeae PID1] gi|240121287|ref|ZP_04734249.1| hypothetical protein NgonPI_05870 [Neisseria gonorrhoeae PID24-1] gi|240124121|ref|ZP_04737077.1| hypothetical protein NgonP_09310 [Neisseria gonorrhoeae PID332] gi|240126263|ref|ZP_04739149.1| hypothetical protein NgonSK_08652 [Neisseria gonorrhoeae SK-92-679] gi|240128790|ref|ZP_04741451.1| hypothetical protein NgonS_09224 [Neisseria gonorrhoeae SK-93-1035] gi|260439893|ref|ZP_05793709.1| hypothetical protein NgonDG_02184 [Neisseria gonorrhoeae DGI2] Length = 206 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 40/188 (21%), Positives = 77/188 (40%), Gaps = 5/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E ++ G + PT++ Y L + A+ R+ I+K + L +D+S Sbjct: 14 ERLIKQAVEIINQGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A +D + K PGP T +L L KT R+P + L Sbjct: 74 ELGTYAKIDNVQFRQLKAATPGPYTFILQATKDAPARAL-HPKRKTIGLRIPDNAVAQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL + + + + + L+IDGG +T++++ Sbjct: 133 LEELGGPLLSCTLMLPEDGEPLTDPYEIRERLEHAVDLVIDGGWCGTD-PTTVIDMTDGT 191 Query: 188 KVRILRPG 195 ++ +R G Sbjct: 192 EL--VRRG 197 >gi|326673503|ref|XP_693825.3| PREDICTED: hypothetical protein LOC565454 [Danio rerio] Length = 880 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 53/206 (25%), Positives = 94/206 (45%), Gaps = 9/206 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 +++ L K + L+ IPT+TVY LA +NP+AI ++Y IK RPA P+ +S + Sbjct: 667 ETSGLLKIAKLLENNGVCGIPTDTVYALAASCKNPSAIEKIYTIKDRPAEKPICICISSV 726 Query: 68 SMV-KKHASVDPLSLHLAKLFWPGPLTLVLDLLS---TTDIHP--LSTANLKTACFRVPC 121 + PL + +PG ++ ++ + P ++ RVP Sbjct: 727 EQLVAAKPPFSPLLWEFMRNVYPGGISCIVPKGDWLLKLGVGPAYDRVGTRESIMIRVPD 786 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 + + PLAI SAN SG+ T+ +++ + +I ++ G S + ST+V Sbjct: 787 HTATAHLCEFTGPLAITSANPSGEADSTHHDMVIN-RLGHKIEGVLCDGESNEVVASTVV 845 Query: 182 NVQ--CEKKVRILRPGGLEIETLKRA 205 N E + ILR G + +++ Sbjct: 846 NCLKIDEGAISILREGCVPALKVRQI 871 >gi|194435076|ref|ZP_03067314.1| Sua5/YciO/YrdC/YwlC family protein [Shigella dysenteriae 1012] gi|194416683|gb|EDX32814.1| Sua5/YciO/YrdC/YwlC family protein [Shigella dysenteriae 1012] gi|320182719|gb|EFW57605.1| putative ribosome maturation factor [Shigella boydii ATCC 9905] gi|332085429|gb|EGI90595.1| ribosome maturation factor [Shigella boydii 5216-82] gi|332086276|gb|EGI91432.1| ribosome maturation factor [Shigella dysenteriae 155-74] Length = 190 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 51/185 (27%), Positives = 76/185 (41%), Gaps = 8/185 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +A+ A + L+ IA PTE V+G+ D + TA+ RL E+K+RP LI ++ Sbjct: 8 DAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQ 67 Query: 70 VKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 +K + L+ + WPGP+T V STT T + RV Sbjct: 68 LKPYIDDTMLTDAQRETIFSRWPGPVTFVFPAPSTT--PRWLTGRFDSLAVRVTDHPLVV 125 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 L + YG PL SAN SG V + + P ++ G S I + Sbjct: 126 ALCQAYGKPLVSTSANLSGLPPCRTVDEV-RAQFGAAFP-VVPGETGGRLNPSEIRDALT 183 Query: 186 EKKVR 190 + R Sbjct: 184 GELFR 188 >gi|150025693|ref|YP_001296519.1| translation factor [Flavobacterium psychrophilum JIP02/86] gi|149772234|emb|CAL43710.1| Putative translation factor [Flavobacterium psychrophilum JIP02/86] Length = 188 Score = 157 bits (399), Expect = 1e-36, Method: Composition-based stats. Identities = 56/192 (29%), Positives = 88/192 (45%), Gaps = 7/192 (3%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 M I + A E + G I PT+TV+G+ D+ NP A+ ++Y++K+R +IC Sbjct: 1 MDINQE--IHNAYEVIKEGGIILYPTDTVWGIGCDATNPEAVAKIYKLKQRAETQSMICL 58 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCG 122 ++ M+ P P TL+LD +I P A KT R V Sbjct: 59 MNGEKMMYNVFKDIPEVAWQIMDVSEKPTTLILDNP--RNIAPNLIATDKTLGIRIVKEP 116 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI-GLESTIV 181 F KL+E PL SAN SGQ + K I + + +++ KI G STI+ Sbjct: 117 FCFKLLERMKKPLVSTSANISGQPTPIAFKDISPEILKG-VDYVVNLHHEKIGGKPSTII 175 Query: 182 NVQCEKKVRILR 193 + + +V+++R Sbjct: 176 KLTNDSQVKVIR 187 >gi|227115514|ref|ZP_03829170.1| putative DNA topoisomerase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 189 Score = 157 bits (399), Expect = 1e-36, Method: Composition-based stats. Identities = 54/192 (28%), Positives = 80/192 (41%), Gaps = 9/192 (4%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 + ++D + E L IA PTE V+GL D + A+ RL +K+RP LI Sbjct: 1 MSDVSDERMIPVLRE-LHDEQVIAYPTEAVFGLGCDPDSEVAVNRLLALKQRPWQKGLIL 59 Query: 63 HVSDISMVKKHASVDPLSLH---LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 +D S + + LS + WPGP+T VL TT T + RV Sbjct: 60 IAADFSQLAPYIDDSALSDEQKAVMFSTWPGPVTWVLPAKRTTPQ--WLTGQFSSLAVRV 117 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 K+L YG PL SAN SG+ + + S + P ++ G + S Sbjct: 118 SDHPLVKELCLRYGKPLVSTSANLSGKPPCRTAQEV-SLQFGDDFP-VLVGDVGGRMNPS 175 Query: 179 TIVNVQCEKKVR 190 I +V + +R Sbjct: 176 EIRDVLTGELIR 187 >gi|170769585|ref|ZP_02904038.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia albertii TW07627] gi|170121642|gb|EDS90573.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia albertii TW07627] Length = 190 Score = 157 bits (399), Expect = 1e-36, Method: Composition-based stats. Identities = 51/185 (27%), Positives = 78/185 (42%), Gaps = 8/185 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +A+ A + L+ IA PTE V+G+ D + TA+ RL ++K+RP LI ++ Sbjct: 8 DAIASAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLDLKQRPVDKGLILIAANYEQ 67 Query: 70 VKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 +K + L+ + WPGP+T V STT T + RV Sbjct: 68 LKPYIDDSMLTKAQRETIFSRWPGPVTFVFPAPSTT--PRWLTGRFDSLAVRVTDHPLVV 125 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 L + YG PL SAN SG V+ + + E P ++ G S I + Sbjct: 126 ALCQAYGKPLVSSSANLSGLPPCRTVEEV-RAQFGVEFP-VVPGETGGRLNPSEIRDALT 183 Query: 186 EKKVR 190 + R Sbjct: 184 GELFR 188 >gi|295086554|emb|CBK68077.1| translation factor SUA5 [Bacteroides xylanisolvens XB1A] Length = 202 Score = 157 bits (399), Expect = 1e-36, Method: Composition-based stats. Identities = 48/189 (25%), Positives = 88/189 (46%), Gaps = 8/189 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 ++KAC+ ++ G I PT+TV+G+ D+ N A+RR+YEIKKR ++ V Sbjct: 18 EDIKKACQVMNEGGVILYPTDTVWGIGCDATNEEAVRRVYEIKKRADSKAMLVLVDSPVK 77 Query: 70 VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 V + V ++ L ++ PLT++ ++ P A + RV F+++L Sbjct: 78 VDFYVQDVPDVAWDLIEVA-DKPLTIIYS--GARNLAPNLLAEDGSVGIRVTNEDFSRRL 134 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQC 185 + + + SAN SGQ N +S I + I+ + S+I+ ++ Sbjct: 135 CQQFRKAIVSTSANVSGQPGAANFSE-ISDEIKSAVDYIVGFRQDDMNKPKPSSIIKLEK 193 Query: 186 EKKVRILRP 194 ++I+R Sbjct: 194 GGVIKIIRE 202 >gi|301063995|ref|ZP_07204460.1| Sua5/YciO/YrdC/YwlC family protein [delta proteobacterium NaphS2] gi|300441906|gb|EFK06206.1| Sua5/YciO/YrdC/YwlC family protein [delta proteobacterium NaphS2] Length = 215 Score = 157 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 61/198 (30%), Positives = 99/198 (50%), Gaps = 6/198 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L+ A L +G +A PTE+ YGLA D+ N AIRRL++IK+R P++ + D+ +K Sbjct: 19 LKDAAAILKSGGLVAYPTESYYGLAADAANEAAIRRLFQIKRRKPGEPILLLIPDVGSLK 78 Query: 72 K-HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + A V + L FWPG LT+V + + D+ L TA R+ L++ Sbjct: 79 RCVAHVPEAAKRLMDAFWPGGLTIVFE--AQKDLSMLLTAGTSKIGIRLSSHPLATALVK 136 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G P+ SAN SG+ + + ++ + K + I+DGG + ST+++V + Sbjct: 137 AMGSPITGTSANVSGEPPCRTPRGVFNA-LGKGVDKILDGGETPGEKPSTVLDVTS-YPL 194 Query: 190 RILRPGGLEIETLKRAIS 207 ILR G + + L Sbjct: 195 TILREGIISKKMLAPFCG 212 >gi|75908905|ref|YP_323201.1| translation factor SUA5 [Anabaena variabilis ATCC 29413] gi|75702630|gb|ABA22306.1| translation factor SUA5 [Anabaena variabilis ATCC 29413] Length = 219 Score = 157 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 54/222 (24%), Positives = 95/222 (42%), Gaps = 22/222 (9%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 +I+++ N + + L +G + PT+TVY + D +A+ R+ +IK+ Sbjct: 3 KIIAVHPDNPQSRRIEEIRSALSSGAVMLYPTDTVYAIGCDLNVKSAVERVRQIKQLAND 62 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTAC 116 PL +S V +A V + + K PG T +L +T + L + KT Sbjct: 63 KPLTFLCPSLSNVATYAFVSDTAYRIMKRLIPGTYTFLLP--ATKLVPKLVQSPKRKTTG 120 Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQ-----------ISITNVKHILSSSICKEIP 164 RVP L+E G+P+ SA+ SIT++ L + K + Sbjct: 121 IRVPNHTVCLALLEALGNPIISTSAHIPPDEAGNGKVGIVSESITSMAE-LFDRVDKLVD 179 Query: 165 LIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAI 206 +I+D G STIV++ ++ + + GL E +K + Sbjct: 180 VIVDTGQEPTYDVSTIVDLTGDEPMITRQ--GLGWEAVKAWV 219 >gi|309781239|ref|ZP_07675976.1| Sua5/YciO/YrdC/YwlC family protein [Ralstonia sp. 5_7_47FAA] gi|308920060|gb|EFP65720.1| Sua5/YciO/YrdC/YwlC family protein [Ralstonia sp. 5_7_47FAA] Length = 207 Score = 157 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 49/197 (24%), Positives = 84/197 (42%), Gaps = 5/197 (2%) Query: 1 MQIMSITDS-NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 QI T +R+A E + G +A+PT++ Y LA + +A+ RL ++ + Sbjct: 5 FQIHPTTPQGRLIRQAVEIIRGGGLVALPTDSCYALACHLDDKSAVERLRRVRSIDEKHH 64 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 L D+S + A VD + K PGP +L+ LS + KT RV Sbjct: 65 LTLMCRDLSELATFARVDNKQYRVLKAATPGPFVFLLEATKEVP-RRLSHPSRKTIGLRV 123 Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P L+ G PL + G N + + K++ L+IDGG + + Sbjct: 124 PEHAIPLALMAELGEPLLSATLQLPGDDEPLNEAETIRDRLEKQLELVIDGGPAPA-EPT 182 Query: 179 TIVNVQCEKKVRILRPG 195 T++++ + ++R G Sbjct: 183 TVIDLTGGEP-ELVRQG 198 >gi|300921909|ref|ZP_07138064.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 182-1] gi|301325152|ref|ZP_07218684.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 78-1] gi|300421710|gb|EFK05021.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 182-1] gi|300847984|gb|EFK75744.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 78-1] Length = 190 Score = 157 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 50/185 (27%), Positives = 76/185 (41%), Gaps = 8/185 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +A+ A + L+ IA PTE V+G+ D + TA+ RL E+K+RP LI ++ Sbjct: 8 DAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQ 67 Query: 70 VKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 +K + L+ + WPGP+T V +TT T + RV Sbjct: 68 LKPYIDDTMLTDAQRETIFSRWPGPITFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVV 125 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 L + YG PL SAN SG V + + P ++ G S I + Sbjct: 126 ALCQAYGKPLVSTSANLSGLPPCRTVDEV-RAQFGAAFP-VVPGETGGRLNPSEIRDALT 183 Query: 186 EKKVR 190 + R Sbjct: 184 GELFR 188 >gi|297619997|ref|YP_003708102.1| Sua5/YciO/YrdC/YwlC family protein [Methanococcus voltae A3] gi|297378974|gb|ADI37129.1| Sua5/YciO/YrdC/YwlC family protein [Methanococcus voltae A3] Length = 209 Score = 157 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 51/208 (24%), Positives = 96/208 (46%), Gaps = 8/208 (3%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+I+ L A ++L G PT+T+YG+ + + + R+Y+IK R P Sbjct: 1 MKIIRKGVEITLNDAKKYLKNGEIALCPTDTIYGICGYALDKNVVDRIYKIKNRDESKPF 60 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 + S ++K+A V+ ++ L F PGP+TL+L + I R+P Sbjct: 61 SISLQKKSDIQKYAKVNNVAKKLINKFLPGPITLILPKKES--IPDYIC--KDYVGIRIP 116 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 ++E P+ SAN SG+ S ++ + I + +IID G + STI Sbjct: 117 DSKI--ILELSEIPITSTSANVSGRPSSYSISK-MDKEILNSVDIIIDDGDCEYKKPSTI 173 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISV 208 V + + + ++R G + + + + +++ Sbjct: 174 VKII-DNDIELIREGSISFDNILKELNL 200 >gi|158338241|ref|YP_001519418.1| Sua5/YciO/YrdC/YwlC family protein [Acaryochloris marina MBIC11017] gi|158308482|gb|ABW30099.1| Sua5/YciO/YrdC/YwlC family protein [Acaryochloris marina MBIC11017] Length = 220 Score = 157 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 47/212 (22%), Positives = 87/212 (41%), Gaps = 18/212 (8%) Query: 2 QIMSITDSNALRKACEFLD----AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 QI ++ + ++ + + G + PT+TVY + D A++R+ +IK+ Sbjct: 3 QIYTVHPQDPQQRTIDAIRADLLNGAVMLYPTDTVYAIGCDINAKAAVQRVRQIKQMSND 62 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLST-ANLKTAC 116 PL S +S + ++A V + + + PGP T +L +T + L KT Sbjct: 63 KPLTFLCSSLSNIAQYARVSDSAYKIMRKLIPGPYTFLLP--ATKLVPKLVQNPKRKTTG 120 Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQI---------SITNVKHILSSSICKEIPLI 166 RVP L+++ P+ SA+ S Q L K++ LI Sbjct: 121 IRVPDHPVCLSLLDSLATPIISTSAHFSDQESVHGWSKKQEPLTPVE-LFDHFDKQVDLI 179 Query: 167 IDGGISKIGLESTIVNVQCEKKVRILRPGGLE 198 I+ G STI+++ ++ + G + Sbjct: 180 IENGQDLSTKVSTILDLCQDQPAVVREGLGWD 211 >gi|169351563|ref|ZP_02868501.1| hypothetical protein CLOSPI_02343 [Clostridium spiroforme DSM 1552] gi|169291785|gb|EDS73918.1| hypothetical protein CLOSPI_02343 [Clostridium spiroforme DSM 1552] Length = 200 Score = 157 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 59/202 (29%), Positives = 103/202 (50%), Gaps = 7/202 (3%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + + NA+ + + + +A PTETV+GL + + A+ LYE+K R + ++ Sbjct: 5 LVEKNAIEEVAKLVSDNQVVAFPTETVFGLGIKFGSYEALNSLYELKHRDRHKAISMMIN 64 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 + ++K+A V+ + + K F PG +T++L I TA+L T R+P F Sbjct: 65 NPKDIEKYAYVNDQARKIIKSFMPGMVTIILKKRE--FIDDYFTASLDTIGIRIPDDKFV 122 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 L+E G P+ + SAN SG+ ++ + K ++ +IPLI+ G S STI+++ Sbjct: 123 LSLLEKTG-PMLVTSANLSGEDTLVDDKAVMK-VFSGKIPLIVKGE-SVSKKASTIIDLS 179 Query: 185 CEKKVRILRPGGLEIETLKRAI 206 KV ILR G + + + I Sbjct: 180 K-GKVEILRVGDISEKQILEVI 200 >gi|260911833|ref|ZP_05918400.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella sp. oral taxon 472 str. F0295] gi|260634044|gb|EEX52167.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella sp. oral taxon 472 str. F0295] Length = 189 Score = 157 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 49/192 (25%), Positives = 92/192 (47%), Gaps = 8/192 (4%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 +T ++KA E L G I PT+T++G+ D+ N A+ ++Y+IK+R +IC V Sbjct: 1 MTREEDIKKAVEVLRKGGVILYPTDTIWGIGCDATNAEAVAKVYQIKQRDDSKAMICLVD 60 Query: 66 DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGF 123 ++++ +V ++ L +L P TL+LD ++ P A + RV F Sbjct: 61 SAMRMQRYVRNVPNVAWDLVELAT-KPTTLILD--DAVNLAPNLIAEDGSVALRVTTEPF 117 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--GLESTIV 181 +K+L + L SAN SG+ + N K +S + + + + S+I+ Sbjct: 118 SKELCYRFQKALVSTSANISGEPAAANYKD-ISEELLNAVDYVCWSRRQEHKPHTPSSII 176 Query: 182 NVQCEKKVRILR 193 + + +V ++R Sbjct: 177 KLNKDGEVTVIR 188 >gi|238763697|ref|ZP_04624656.1| Ribosomal modification protein RimN [Yersinia kristensenii ATCC 33638] gi|238697999|gb|EEP90757.1| Ribosomal modification protein RimN [Yersinia kristensenii ATCC 33638] Length = 190 Score = 157 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 47/187 (25%), Positives = 73/187 (39%), Gaps = 8/187 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 ++ L L IA PTE V+GL D + A+ L +K+RP LI ++ Sbjct: 6 NNTVLADVLRALQQEEVIAYPTEAVFGLGCDPDSEKAVNALLALKQRPWQKGLILIAANY 65 Query: 68 SMVKKH---ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 +K + A++ WPGP+T V+ T T + + RV Sbjct: 66 EQLKPYLNDAALSDTQREAIFSSWPGPVTWVIPARPET--PRWLTGSFDSLAVRVSDHPL 123 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 ++L YG PL SAN SGQ + + +P + G + S I + Sbjct: 124 VQQLCSQYGKPLVSTSANLSGQEPCRTTEEV-RKQFGVSLP-VFTGLVGGRLNPSEIRDA 181 Query: 184 QCEKKVR 190 K+ R Sbjct: 182 LTGKQFR 188 >gi|167753477|ref|ZP_02425604.1| hypothetical protein ALIPUT_01751 [Alistipes putredinis DSM 17216] gi|167658102|gb|EDS02232.1| hypothetical protein ALIPUT_01751 [Alistipes putredinis DSM 17216] Length = 200 Score = 157 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 40/188 (21%), Positives = 77/188 (40%), Gaps = 6/188 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + L+ + PT++VY R+ A+ RL IK + + Sbjct: 12 EKEIDRVVNLLERDGVVIYPTDSVYAFGCSIRSAKAVERLRRIKGKDLTT-FSVVFDSLG 70 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + VD L K PGP T +LD +++ + + +T R+P + + Sbjct: 71 QIADYCRVDNAQFRLLKQNLPGPFTFLLD--ASSRMPHKALERRRTIGIRIPDNSIPRAI 128 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL S + ++ +++ L+IDGG+ + +T+V++ + Sbjct: 129 VERLGAPLLTSSVLDDEETEYMTDPELIHERYGRDVELVIDGGVGDA-VPTTVVDLTGGE 187 Query: 188 KVRILRPG 195 ILR G Sbjct: 188 P-EILREG 194 >gi|56480306|ref|NP_709070.2| putative ribosome maturation factor [Shigella flexneri 2a str. 301] gi|81722931|sp|Q83JD1|RIMN_SHIFL RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|56383857|gb|AAN44777.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] Length = 190 Score = 157 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 50/186 (26%), Positives = 77/186 (41%), Gaps = 10/186 (5%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +A+ A + L+ IA PTE V+G+ D + TA+ RL E+K+RP LI ++ Sbjct: 8 DAIAAAIDVLNEKRVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQ 67 Query: 70 VKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 +K + + WPGP+T V +TT T + RV Sbjct: 68 LKPYIDDTMLTDVQRETIFSCWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVV 125 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL-ESTIVNVQ 184 L + YG PL SAN SG V + + P++ G ++ L S I + Sbjct: 126 ALCQAYGKPLVSTSANLSGLPPCRTVDEV-RAQFGAAFPVV--PGETRGRLNPSEIRDAL 182 Query: 185 CEKKVR 190 + R Sbjct: 183 TGELFR 188 >gi|78485574|ref|YP_391499.1| Sua5/YciO/YrdC/YwlC [Thiomicrospira crunogena XCL-2] gi|78363860|gb|ABB41825.1| Sua5/YciO/YrdC/YwlC family protein [Thiomicrospira crunogena XCL-2] Length = 207 Score = 157 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 44/194 (22%), Positives = 73/194 (37%), Gaps = 4/194 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 L + E L+ G IA PTE+ Y L N R+ I++ + D+S Sbjct: 17 ERLLLQVVEVLNKGGVIAYPTESGYALGCLLDNKEGADRIRAIRRLDEKHHFTLVCPDLS 76 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGFTKKL 127 + +A V + K PGP T +L L T KT RV P T L Sbjct: 77 HLSAYAKVGNVQFRYLKSHLPGPYTFILPASREVP-RRLQTPKRKTIGLRVTPNVVTNAL 135 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + + PL S G+ + ++ + ++DGG +T+++ + Sbjct: 136 LSYFDKPLISVSLILPGEDLPMTDGWSIQETLGHALDAVLDGGFCGF-EPTTVIDFTDDV 194 Query: 188 KVRILRPGGLEIET 201 ++R G E + Sbjct: 195 P-ELIRQGQGEFKE 207 >gi|74313802|ref|YP_312221.1| putative ribosome maturation factor [Shigella sonnei Ss046] gi|170683354|ref|YP_001745545.1| putative ribosome maturation factor [Escherichia coli SMS-3-5] gi|191169298|ref|ZP_03031047.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli B7A] gi|191174443|ref|ZP_03035944.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli F11] gi|193066486|ref|ZP_03047530.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli E22] gi|193071546|ref|ZP_03052455.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli E110019] gi|209920748|ref|YP_002294832.1| putative ribosome maturation factor [Escherichia coli SE11] gi|218555840|ref|YP_002388753.1| putative ribosome maturation factor [Escherichia coli IAI1] gi|218560344|ref|YP_002393257.1| ribosome maturation factor [Escherichia coli S88] gi|218696975|ref|YP_002404642.1| putative ribosome maturation factor [Escherichia coli 55989] gi|256020641|ref|ZP_05434506.1| putative ribosome maturation factor [Shigella sp. D9] gi|260846080|ref|YP_003223858.1| putative ribosome maturation factor [Escherichia coli O103:H2 str. 12009] gi|260857403|ref|YP_003231294.1| putative ribosome maturation factor [Escherichia coli O26:H11 str. 11368] gi|260870026|ref|YP_003236428.1| putative ribosome maturation factor [Escherichia coli O111:H- str. 11128] gi|300822914|ref|ZP_07103050.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 119-7] gi|300903531|ref|ZP_07121453.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 84-1] gi|300918257|ref|ZP_07134861.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 115-1] gi|300935280|ref|ZP_07150291.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 21-1] gi|300973962|ref|ZP_07172369.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 200-1] gi|301305492|ref|ZP_07211584.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 124-1] gi|306816375|ref|ZP_07450513.1| putative ribosome maturation factor [Escherichia coli NC101] gi|307315139|ref|ZP_07594722.1| SUA5/yciO/yrdC domain protein [Escherichia coli W] gi|309794558|ref|ZP_07688980.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 145-7] gi|331659573|ref|ZP_08360511.1| protein YrdC [Escherichia coli TA206] gi|331670112|ref|ZP_08370951.1| protein YrdC [Escherichia coli TA271] gi|331684925|ref|ZP_08385511.1| protein YrdC [Escherichia coli H299] gi|123616010|sp|Q3YWX6|RIMN_SHISS RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|212277679|sp|B1LGN9|RIMN_ECOSM RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|212277720|sp|Q1R650|RIMN_ECOUT RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|212277723|sp|Q0TCH9|RIMN_ECOL5 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|212277725|sp|A7ZSH1|RIMN_ECO24 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|212277737|sp|A1AGH4|RIMN_ECOK1 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|212288264|sp|B2U2Q0|RIMN_SHIB3 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|73857279|gb|AAZ89986.1| conserved hypothetical protein [Shigella sonnei Ss046] gi|170521072|gb|ACB19250.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli SMS-3-5] gi|190900653|gb|EDV60453.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli B7A] gi|190905251|gb|EDV64889.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli F11] gi|192925867|gb|EDV80517.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli E22] gi|192955134|gb|EDV85628.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli E110019] gi|209914007|dbj|BAG79081.1| conserved hypothetical protein [Escherichia coli SE11] gi|218353707|emb|CAU99974.1| putative ribosome maturation factor [Escherichia coli 55989] gi|218362608|emb|CAR00234.1| putative ribosome maturation factor [Escherichia coli IAI1] gi|218367113|emb|CAR04887.1| putative ribosome maturation factor [Escherichia coli S88] gi|222034991|emb|CAP77734.1| Uncharacterized protein yrdC [Escherichia coli LF82] gi|257756052|dbj|BAI27554.1| predicted ribosome maturation factor [Escherichia coli O26:H11 str. 11368] gi|257761227|dbj|BAI32724.1| predicted ribosome maturation factor [Escherichia coli O103:H2 str. 12009] gi|257766382|dbj|BAI37877.1| predicted ribosome maturation factor [Escherichia coli O111:H- str. 11128] gi|300308972|gb|EFJ63492.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 200-1] gi|300404404|gb|EFJ87942.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 84-1] gi|300414518|gb|EFJ97828.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 115-1] gi|300459483|gb|EFK22976.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 21-1] gi|300524680|gb|EFK45749.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 119-7] gi|300839187|gb|EFK66947.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 124-1] gi|305850771|gb|EFM51228.1| putative ribosome maturation factor [Escherichia coli NC101] gi|306905488|gb|EFN36023.1| SUA5/yciO/yrdC domain protein [Escherichia coli W] gi|307628317|gb|ADN72621.1| putative ribosome maturation factor [Escherichia coli UM146] gi|308121608|gb|EFO58870.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 145-7] gi|312947833|gb|ADR28660.1| putative ribosome maturation factor [Escherichia coli O83:H1 str. NRG 857C] gi|315062574|gb|ADT76901.1| predicted ribosome maturation factor [Escherichia coli W] gi|315255866|gb|EFU35834.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 85-1] gi|315284583|gb|EFU44028.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 110-3] gi|315297148|gb|EFU56428.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 16-3] gi|320173927|gb|EFW49103.1| putative ribosome maturation factor [Shigella dysenteriae CDC 74-1112] gi|320199470|gb|EFW74060.1| putative ribosome maturation factor [Escherichia coli EC4100B] gi|323154120|gb|EFZ40323.1| ribosome maturation factor [Escherichia coli EPECa14] gi|323162961|gb|EFZ48796.1| ribosome maturation factor [Escherichia coli E128010] gi|323179182|gb|EFZ64756.1| ribosome maturation factor [Escherichia coli 1180] gi|323182762|gb|EFZ68163.1| ribosome maturation factor [Escherichia coli 1357] gi|323376839|gb|ADX49107.1| SUA5/yciO/yrdC domain protein [Escherichia coli KO11] gi|323944297|gb|EGB40373.1| yrdC domain-containing protein [Escherichia coli H120] gi|323950196|gb|EGB46078.1| yrdC domain-containing protein [Escherichia coli H252] gi|323954595|gb|EGB50378.1| yrdC domain-containing protein [Escherichia coli H263] gi|324014959|gb|EGB84178.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 60-1] gi|324017405|gb|EGB86624.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 117-3] gi|324116328|gb|EGC10248.1| yrdC domain-containing protein [Escherichia coli E1167] gi|331052788|gb|EGI24821.1| protein YrdC [Escherichia coli TA206] gi|331062174|gb|EGI34094.1| protein YrdC [Escherichia coli TA271] gi|331077296|gb|EGI48508.1| protein YrdC [Escherichia coli H299] Length = 190 Score = 157 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 50/185 (27%), Positives = 76/185 (41%), Gaps = 8/185 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +A+ A + L+ IA PTE V+G+ D + TA+ RL E+K+RP LI ++ Sbjct: 8 DAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQ 67 Query: 70 VKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 +K + L+ + WPGP+T V +TT T + RV Sbjct: 68 LKPYIDDTMLTDAQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVV 125 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 L + YG PL SAN SG V + + P ++ G S I + Sbjct: 126 ALCQAYGKPLVSTSANLSGLPPCRTVDEV-RAQFGAAFP-VVPGETGGRLNPSEIRDALT 183 Query: 186 EKKVR 190 + R Sbjct: 184 GELFR 188 >gi|121595728|ref|YP_987624.1| Sua5/YciO/YrdC/YwlC family protein [Acidovorax sp. JS42] gi|120607808|gb|ABM43548.1| Sua5/YciO/YrdC/YwlC family protein [Acidovorax sp. JS42] Length = 211 Score = 157 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 48/198 (24%), Positives = 86/198 (43%), Gaps = 6/198 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 L++A L +G +A+PT++ Y L + A+ ++ I++ + L D+S Sbjct: 14 PRLLKQAATLLSSGGILAVPTDSSYALVCRLDDKDAVDQIRRIRQINDKHHLTLLCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127 + +A VD L KL PGP T +LD +S KT RVP + L Sbjct: 74 ELANYAHVDNRQYRLLKLATPGPYTFILDATKEVP-RRVSHPQRKTIGLRVPDRKGLQML 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ--- 184 +E +G PL + +G+ N + K++ I+D G + +T++++ Sbjct: 133 LELHGAPLLATTLIPAGESEPLNDPQEIRERFEKQLDGILDAGGCPL-EPTTVLDLTPMN 191 Query: 185 CEKKVRILRPGGLEIETL 202 ++R GG + L Sbjct: 192 TGGDPIVVREGGGSLAKL 209 >gi|293609079|ref|ZP_06691382.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292829652|gb|EFF88014.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 205 Score = 157 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 47/197 (23%), Positives = 81/197 (41%), Gaps = 6/197 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A E + AG + PT+ Y + N A+ R+ +I+ + D+S Sbjct: 13 QRLIAQAVERIRAGDVVVYPTDAAYAIGCQIGNKNAMERIAQIRGLGPKHQYAIMCCDLS 72 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD + L K P T +L S L KT R+P + L Sbjct: 73 DIATYAKVDNATYRLLKANTPAITTFILPATSEVP-RRLMHPKKKTIGLRIPSNPICQAL 131 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST-IVNVQCE 186 ++ G PL + GQ + + + + + K I + IDGG + ST IV++ E Sbjct: 132 LQELGEPLLTSTLILPGQEDPLDDPYDIENQLDKRIDVFIDGGFGTLT--STSIVDLSGE 189 Query: 187 KKVRILRPGGLEIETLK 203 I+R G ++ + Sbjct: 190 HP-EIIRRGVGDVSAFE 205 >gi|282879660|ref|ZP_06288391.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella timonensis CRIS 5C-B1] gi|281306608|gb|EFA98637.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella timonensis CRIS 5C-B1] Length = 189 Score = 157 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 45/192 (23%), Positives = 90/192 (46%), Gaps = 8/192 (4%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + ++ A E + G I PT+TV+G+ D+ N A+ ++Y+IKKR LIC V Sbjct: 1 MNQQEDIKNAIEVMKQGGVILYPTDTVWGIGCDATNAEAVAKVYKIKKRDDSKALICLVD 60 Query: 66 DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GF 123 + ++++ +V ++ + + P T++LD ++ P A + R+ F Sbjct: 61 SDARLQRYVRNVPNVAWDILDIAT-KPTTIILD--GAINLAPNLIAEDGSIALRITKEPF 117 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--GLESTIV 181 + +L + PL SAN SG+ + N +S + + + + S+I+ Sbjct: 118 SHELCYRFQKPLVSTSANISGEPAAANYND-ISQELLDAVDYVCFSRRQEHKPHTPSSII 176 Query: 182 NVQCEKKVRILR 193 ++ + +V I+R Sbjct: 177 KLKEDGEVTIIR 188 >gi|261823196|ref|YP_003261302.1| SUA5/yciO/yrdC domain protein [Pectobacterium wasabiae WPP163] gi|261607209|gb|ACX89695.1| SUA5/yciO/yrdC domain protein [Pectobacterium wasabiae WPP163] Length = 189 Score = 157 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 53/176 (30%), Positives = 75/176 (42%), Gaps = 8/176 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L IA PTE V+GL D + A+ RL +K+RP LI +D S + + Sbjct: 16 LHTEHVIAYPTEAVFGLGCDPDSEVAVNRLLALKQRPWQKGLILIAADFSQLVPYIDDSA 75 Query: 79 LSLH---LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHP 134 LS + WPGP+T VL TT T + RV K+L + YG P Sbjct: 76 LSDEQKAVMFSTWPGPVTWVLPAKHTTPQ--WLTGQFSSLAVRVSGHPLVKELCQRYGKP 133 Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 L SAN SGQ + + S + P ++ G + S I +V + +R Sbjct: 134 LVSTSANLSGQPPCRTAQEV-SQQFGDDFP-VLVGDVGGRMNPSEIRDVLTGELIR 187 >gi|17545860|ref|NP_519262.1| hypothetical protein RSc1141 [Ralstonia solanacearum GMI1000] gi|17428154|emb|CAD14843.1| putative rna-binding protein, yrdc [Ralstonia solanacearum GMI1000] Length = 207 Score = 157 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 50/198 (25%), Positives = 84/198 (42%), Gaps = 4/198 (2%) Query: 1 MQIMSITDS-NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 QI T +R+A E + AG IA+PT++ Y LA + A+ RL ++ + Sbjct: 5 FQIHPTTPQGRLIRQAVEIIRAGGLIALPTDSCYALACHLDDKAAVERLRRVRGIDEKHH 64 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 L D+S + A VD K PGP +L+ LS + KT RV Sbjct: 65 LTLMCRDLSELATFARVDNRQYRAVKAATPGPFVFLLEATREVP-RRLSHPSRKTIGLRV 123 Query: 120 PCGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P L+ G PL + G + N + + + +++ L+IDGG + + Sbjct: 124 PDHPIPLALMAELGEPLLSATLQLPGDEAPLNEADAIRALLERQLELVIDGGPAPA-EPT 182 Query: 179 TIVNVQCEKKVRILRPGG 196 T++++ + + R G Sbjct: 183 TVIDLTGGEPELVRRGRG 200 >gi|218702046|ref|YP_002409675.1| putative ribosome maturation factor [Escherichia coli IAI39] gi|218372032|emb|CAR19890.1| putative ribosome maturation factor [Escherichia coli IAI39] Length = 190 Score = 157 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 49/185 (26%), Positives = 76/185 (41%), Gaps = 8/185 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +++ A + L+ IA PTE V+G+ D + TA+ RL E+K+RP LI ++ Sbjct: 8 DSIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQ 67 Query: 70 VKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 +K + L+ + WPGP+T V +TT T + RV Sbjct: 68 LKPYIDDTMLTDAQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVV 125 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 L + YG PL SAN SG V + + P ++ G S I + Sbjct: 126 ALCQAYGKPLVSTSANLSGLPPCRTVDEV-RAQFGAAFP-VVPGETGGRLNPSEIRDALT 183 Query: 186 EKKVR 190 + R Sbjct: 184 GELFR 188 >gi|16762880|ref|NP_458497.1| ribosome maturation factor [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29144367|ref|NP_807709.1| ribosome maturation factor [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213023921|ref|ZP_03338368.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213161454|ref|ZP_03347164.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213417232|ref|ZP_03350376.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213428279|ref|ZP_03361029.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213582984|ref|ZP_03364810.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213622290|ref|ZP_03375073.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213650875|ref|ZP_03380928.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289824188|ref|ZP_06543783.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|81593190|sp|Q8Z1W6|RIMN_SALTI RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|25305392|pir||AF1010 conserved hypothetical protein yrdC [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16505187|emb|CAD09183.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29140005|gb|AAO71569.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 190 Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 48/182 (26%), Positives = 72/182 (39%), Gaps = 8/182 (4%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 + L+ IA PTE V+G+ D + TA+ RL +K+RP LI + +K Sbjct: 11 AAVVDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIAASFEQLKP 70 Query: 73 HASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + L+ K WPGP+T V +TT T + RV L Sbjct: 71 YIDDSILTAAQRKAVFDCWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTNHPLVVALC 128 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 YG PL SAN SG V+ + + + P +++G S I + + Sbjct: 129 NAYGKPLVSTSANLSGLPPCRTVEEV-RAQFGDDFP-VVEGATGGRLNPSEIRDALTGEL 186 Query: 189 VR 190 R Sbjct: 187 FR 188 >gi|215488582|ref|YP_002331013.1| putative ribosome maturation factor [Escherichia coli O127:H6 str. E2348/69] gi|312968392|ref|ZP_07782602.1| ribosome maturation factor [Escherichia coli 2362-75] gi|215266654|emb|CAS11093.1| predicted ribosome maturation factor [Escherichia coli O127:H6 str. E2348/69] gi|312287217|gb|EFR15127.1| ribosome maturation factor [Escherichia coli 2362-75] gi|320195374|gb|EFW70001.1| putative ribosome maturation factor [Escherichia coli WV_060327] gi|323189112|gb|EFZ74396.1| ribosome maturation factor [Escherichia coli RN587/1] Length = 190 Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 50/185 (27%), Positives = 76/185 (41%), Gaps = 8/185 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +A+ A + L+ IA PTE V+G+ D + TA+ RL E+K+RP LI ++ Sbjct: 8 DAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQ 67 Query: 70 VKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 +K + L+ + WPGP+T V +TT T + RV Sbjct: 68 LKPYIDDTMLTDAQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVV 125 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 L + YG PL SAN SG V + + P ++ G S I + Sbjct: 126 ALCKAYGKPLVSTSANLSGLPPCRTVDEV-RAQFGAAFP-VVPGETGGRLNPSEIRDALT 183 Query: 186 EKKVR 190 + R Sbjct: 184 GELFR 188 >gi|332163223|ref|YP_004299800.1| putative ribosome maturation factor [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325667453|gb|ADZ44097.1| putative ribosome maturation factor [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330861814|emb|CBX71986.1| putative ribosome maturation factor rimN [Yersinia enterocolitica W22703] Length = 181 Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 46/178 (25%), Positives = 71/178 (39%), Gaps = 8/178 (4%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 + L IA PTE V+GL D + A+ L +K+RP LI ++ +K + Sbjct: 6 QALQQEEVIAYPTEAVFGLGCDPDSEKAVNALLALKQRPWQKGLILIAANYEQLKPYVDD 65 Query: 77 DPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132 L+ WPGP+T V+ T T + + RV ++L YG Sbjct: 66 SALTDSQRETIFSVWPGPVTWVIPTHPET--PRWLTGSFDSLAVRVSDHPLVQQLCSQYG 123 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 PL SAN SGQ + + +P ++ G + S I + K+ R Sbjct: 124 KPLVSTSANLSGQEPCRTTEEV-RIQFGSSLP-VLAGLVGGRLNPSEIRDALTGKQFR 179 >gi|163840180|ref|YP_001624585.1| Sua5/YciO/YrdC/YwlC family protein [Renibacterium salmoninarum ATCC 33209] gi|162953656|gb|ABY23171.1| Sua5/YciO/YrdC/YwlC family protein [Renibacterium salmoninarum ATCC 33209] Length = 265 Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 54/210 (25%), Positives = 96/210 (45%), Gaps = 9/210 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + A + + I +PT+TVYG+A D+ +P A+ L K R P + + Sbjct: 15 AEGMAHAKKAIAQKQTIVMPTDTVYGIAADAFSPVAVATLLAAKGRGRSMPPPVLIQRVQ 74 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 + A + + LA+ FWPG LTL+ + D + T R+P Sbjct: 75 TMDGLAVDISEEARKLAEAFWPGGLTLIFHAQPSLDW--DLGDSFGTVALRMPDDKLVLD 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII-DGGISKIG---LESTIVNV 183 + T PLA+ SANR+GQ + V + + + + + +G G STIV+ Sbjct: 133 LLTLTGPLAVSSANRTGQPTARTVAQA-REQLGEVVEVYLGEGERPLDGAEVQPSTIVDA 191 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYC 213 + ++R++RPG + I+ L+ + L++ Sbjct: 192 TGD-RLRVVRPGVITIDQLRGVVPSVLDFG 220 >gi|288927572|ref|ZP_06421419.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella sp. oral taxon 317 str. F0108] gi|288330406|gb|EFC68990.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella sp. oral taxon 317 str. F0108] Length = 189 Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 50/192 (26%), Positives = 92/192 (47%), Gaps = 8/192 (4%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 +T ++KA E L G I PT+T++G+ D+ N A+ ++Y+IK+R +IC V Sbjct: 1 MTREEDIKKAVEVLRKGGIILYPTDTIWGIGCDATNAEAVAKVYQIKQRDDSKAMICLVD 60 Query: 66 DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GF 123 + ++++ +V ++ L +L P TL+LD ++ P A + RV F Sbjct: 61 SATRMQRYVRNVPNVAWDLVELAT-KPTTLILD--DAVNLAPNLIAEDGSVALRVTDEPF 117 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--GLESTIV 181 +K+L + L SAN SGQ + N K +S + + + + S I+ Sbjct: 118 SKELCYRFQKALVSTSANISGQPAAQNYKD-ISEELLNAVDYVCWSRRQEHKPHTPSCII 176 Query: 182 NVQCEKKVRILR 193 + + +V ++R Sbjct: 177 KLNKDGEVTVIR 188 >gi|227495020|ref|ZP_03925336.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces coleocanis DSM 15436] gi|226831472|gb|EEH63855.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces coleocanis DSM 15436] Length = 209 Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 58/211 (27%), Positives = 90/211 (42%), Gaps = 8/211 (3%) Query: 1 MQIM---SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 M+I+ D A E + A PI +PT+TVYG+ + + A+ + K R Sbjct: 1 MRILHCVKTLDDAAKNAVKEAIAADSPIVLPTDTVYGIGGNPASTQAVNNVLAAKGRDRQ 60 Query: 58 NPLICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 P +S + V A P + L + FWPG LTL+L+ ++ T Sbjct: 61 MPPPVLISSPTEVDLVAKNIPQNARILMEKFWPGALTLILET--GDLVNYDLGDMPDTIA 118 Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P I PLA+ SAN +G T+ + ++ L D G + + Sbjct: 119 VRMPNHPVALEILKATGPLAVTSANLTGAEPATDCAQA-TEYFGDKVALYFDAGATPGPV 177 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAIS 207 STIV E + ILR G + L++AI+ Sbjct: 178 PSTIVKFNGEN-LEILRAGLISETALQQAIA 207 >gi|269215181|ref|ZP_05987872.2| Sua5/YciO/YrdC/YwlC family protein [Neisseria lactamica ATCC 23970] gi|269208121|gb|EEZ74576.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria lactamica ATCC 23970] Length = 250 Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 41/189 (21%), Positives = 76/189 (40%), Gaps = 5/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +R+ E L+ G + PT++ Y L + A+ R+ I+K + L +D+S Sbjct: 58 ERLIRQVVEILNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLS 117 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A +D + K PGP T +L L KT R+P + L Sbjct: 118 ELGTYAEIDNVQFRQLKAATPGPYTFILQATKDVPARTL-HPKRKTIGLRIPGNAVAQAL 176 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL + + + + + L+IDGG +T++++ Sbjct: 177 LEELGEPLLSCTLMLPEDGEPLTDPYEIRERLEHAVDLVIDGGWCGTD-PATVIDMTDGT 235 Query: 188 KVRILRPGG 196 ++ +R G Sbjct: 236 EL--VRRGC 242 >gi|150002664|ref|YP_001297408.1| putative translation factor [Bacteroides vulgatus ATCC 8482] gi|254882164|ref|ZP_05254874.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|294776918|ref|ZP_06742379.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides vulgatus PC510] gi|319643278|ref|ZP_07997906.1| hypothetical protein HMPREF9011_03507 [Bacteroides sp. 3_1_40A] gi|149931088|gb|ABR37786.1| conserved hypothetical protein, putative translation factor [Bacteroides vulgatus ATCC 8482] gi|254834957|gb|EET15266.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|294449166|gb|EFG17705.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides vulgatus PC510] gi|317385182|gb|EFV66133.1| hypothetical protein HMPREF9011_03507 [Bacteroides sp. 3_1_40A] Length = 191 Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 52/189 (27%), Positives = 93/189 (49%), Gaps = 8/189 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 L++ACE + G I PT+T++G+ D+ NP A++R+Y+IKKR ++ V Sbjct: 7 EDLKRACEVMQKGGVILYPTDTIWGIGCDATNPEAVKRVYDIKKRADSKAMLVLVDSTVK 66 Query: 70 VKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 V + S P ++ L + F PLT++ D ++ A + RV F+K+L Sbjct: 67 VNFYVSDVPAVAWDLIE-FTTKPLTIIYD--GARNLAENLLAEDGSVGIRVTAEEFSKQL 123 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQC 185 + + SAN SGQ S N +S + + + I++ ++G S+I+ + Sbjct: 124 CFRFRKAIVSTSANISGQPSPANFSE-ISEEVKQAVDYIVEYRQDEVGHPKPSSIIKLGK 182 Query: 186 EKKVRILRP 194 +V+I+R Sbjct: 183 GGEVKIIRE 191 >gi|15803810|ref|NP_289844.1| putative ribosome maturation factor [Escherichia coli O157:H7 EDL933] gi|15833402|ref|NP_312175.1| ribosome maturation factor [Escherichia coli O157:H7 str. Sakai] gi|168752269|ref|ZP_02777291.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4113] gi|168758510|ref|ZP_02783517.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4401] gi|168769144|ref|ZP_02794151.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4486] gi|168777860|ref|ZP_02802867.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4196] gi|168783849|ref|ZP_02808856.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4076] gi|168786172|ref|ZP_02811179.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC869] gi|168802908|ref|ZP_02827915.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC508] gi|195939830|ref|ZP_03085212.1| putative ribosome maturation factor [Escherichia coli O157:H7 str. EC4024] gi|208805660|ref|ZP_03247997.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4206] gi|208813608|ref|ZP_03254937.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4045] gi|208819808|ref|ZP_03260128.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4042] gi|209396523|ref|YP_002272739.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4115] gi|217325662|ref|ZP_03441746.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. TW14588] gi|254795219|ref|YP_003080056.1| putative ribosome maturation factor [Escherichia coli O157:H7 str. TW14359] gi|261224587|ref|ZP_05938868.1| predicted ribosome maturation factor [Escherichia coli O157:H7 str. FRIK2000] gi|261254519|ref|ZP_05947052.1| predicted ribosome maturation factor [Escherichia coli O157:H7 str. FRIK966] gi|81765049|sp|Q8X8F8|RIMN_ECO57 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|12517909|gb|AAG58404.1|AE005555_4 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] gi|13363621|dbj|BAB37571.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|187767015|gb|EDU30859.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4196] gi|188013856|gb|EDU51978.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4113] gi|188998860|gb|EDU67846.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4076] gi|189354694|gb|EDU73113.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4401] gi|189361748|gb|EDU80167.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4486] gi|189374185|gb|EDU92601.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC869] gi|189375257|gb|EDU93673.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC508] gi|208725461|gb|EDZ75062.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4206] gi|208734885|gb|EDZ83572.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4045] gi|208739931|gb|EDZ87613.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4042] gi|209157923|gb|ACI35356.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4115] gi|209757398|gb|ACI77011.1| hypothetical protein ECs4148 [Escherichia coli] gi|209757400|gb|ACI77012.1| hypothetical protein ECs4148 [Escherichia coli] gi|209757402|gb|ACI77013.1| hypothetical protein ECs4148 [Escherichia coli] gi|209757404|gb|ACI77014.1| hypothetical protein ECs4148 [Escherichia coli] gi|209757406|gb|ACI77015.1| hypothetical protein ECs4148 [Escherichia coli] gi|217321883|gb|EEC30307.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. TW14588] gi|254594619|gb|ACT73980.1| predicted ribosome maturation factor [Escherichia coli O157:H7 str. TW14359] gi|320191685|gb|EFW66335.1| putative ribosome maturation factor [Escherichia coli O157:H7 str. EC1212] gi|320639587|gb|EFX09181.1| tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein [Escherichia coli O157:H7 str. G5101] gi|320645085|gb|EFX14101.1| tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein [Escherichia coli O157:H- str. 493-89] gi|320650396|gb|EFX18862.1| tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein [Escherichia coli O157:H- str. H 2687] gi|320655921|gb|EFX23841.1| tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661373|gb|EFX28788.1| tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein [Escherichia coli O55:H7 str. USDA 5905] gi|326342531|gb|EGD66305.1| putative ribosome maturation factor [Escherichia coli O157:H7 str. 1044] gi|326344518|gb|EGD68267.1| putative ribosome maturation factor [Escherichia coli O157:H7 str. 1125] Length = 190 Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 49/185 (26%), Positives = 74/185 (40%), Gaps = 8/185 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +A+ A + L+ IA PTE V+G+ D + TA+ RL E+K+RP LI ++ Sbjct: 8 DAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQ 67 Query: 70 VKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 +K + + WPGP+T V +TT T + RV Sbjct: 68 LKPYIDDTMLTDVQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVV 125 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 L + YG PL SAN SG V + + P ++ G S I + Sbjct: 126 ALCQAYGKPLVSTSANLSGLPPCRTVDEV-RAQFGAAFP-VVPGETGGRLNPSEIRDALT 183 Query: 186 EKKVR 190 + R Sbjct: 184 GELFR 188 >gi|298373254|ref|ZP_06983243.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroidetes oral taxon 274 str. F0058] gi|298274306|gb|EFI15858.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroidetes oral taxon 274 str. F0058] Length = 192 Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 44/187 (23%), Positives = 82/187 (43%), Gaps = 6/187 (3%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + L++A L AG I PT+TV+G+ D+ N ++ R++EIK+RP+ +I + D+ Sbjct: 9 DELKEAVRVLRAGGVILYPTDTVWGIGCDATNHKSVERVFEIKRRPSSKSMIVLLDDMGK 68 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLI 128 + + P + PLT++ ++ P + R+ ++ L Sbjct: 69 IPNYVEDMPDVAWDLVKYATEPLTVIYQ--KGKNLAPNVVGEDGSIAIRITHEEVSRSLC 126 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL--ESTIVNVQCE 186 PL SAN SGQ S +S I + I+ ++ + S IV + + Sbjct: 127 RMLCRPLVSTSANMSGQPSAATFGQ-ISEEIKAAVDYIVPLRQNEHNMPPPSRIVKLYND 185 Query: 187 KKVRILR 193 +++R Sbjct: 186 GVFKVIR 192 >gi|295396779|ref|ZP_06806914.1| Sua5/YciO/YrdC/YwlC family protein [Brevibacterium mcbrellneri ATCC 49030] gi|294970363|gb|EFG46303.1| Sua5/YciO/YrdC/YwlC family protein [Brevibacterium mcbrellneri ATCC 49030] Length = 211 Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 46/204 (22%), Positives = 79/204 (38%), Gaps = 8/204 (3%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 +I+ I N + + ++ G IA PT++ Y L N I R+ I++ A Sbjct: 3 EILEIHPENPQPRLISSVVDVINNGGLIAYPTDSCYALGCSLDNKDGIERITRIRQLSAK 62 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 + D + + + VD + K PGP T +L + A KT Sbjct: 63 HHFTLMCHDFAQLGQFVIVDNSAFRTIKALTPGPYTFILKATKEVP-RRMLHAKKKTVGA 121 Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P + LIE G P+ + G+ + + I K + +I+ G + Sbjct: 122 RIPQNRLSLDLIEQVGEPILSSTLLLPGEDEPLTDPVDVEARIGKLVDVIVASG-TPATT 180 Query: 177 ESTIVNVQCEKKVRILRPGGLEIE 200 ST+V+ V + R G I+ Sbjct: 181 PSTVVDFSSSTPV-VRRVGAGSID 203 >gi|88608553|ref|YP_506460.1| Sua5/YciO/YrdC/YwlC family protein [Neorickettsia sennetsu str. Miyayama] gi|88600722|gb|ABD46190.1| Sua5/YciO/YrdC/YwlC family protein [Neorickettsia sennetsu str. Miyayama] Length = 195 Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 51/195 (26%), Positives = 87/195 (44%), Gaps = 6/195 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + L G + PTETVY LA D+ N A+ R+Y+IK+R L V+ IS + Sbjct: 2 IFETVSLLRVGGVVIFPTETVYALACDASNYRAMLRIYDIKQRNFRKSLPIMVAGISDLG 61 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 AS + L + PGP+T +L + + RVP K++ Sbjct: 62 SFASFNESQARLIQECCPGPVTFILKRKKSAHLRFRFPEK---VAVRVPDSKVALKILRG 118 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 + P+ S N SG+ +++N + S I K + II G S+I+++ ++ V Sbjct: 119 FKRPVFATSVNLSGRPAVSNFTQ-IGSYIKKRVSRIICDNREVKGTASSIIDISGKRAV- 176 Query: 191 ILRPGGLEIETLKRA 205 ++R G ++ Sbjct: 177 LVRKGAFSTSFVENL 191 >gi|300704489|ref|YP_003746092.1| hypothetical protein RCFBP_20293 [Ralstonia solanacearum CFBP2957] gi|299072153|emb|CBJ43485.1| conserved protein of unknown function, translation factor domain (SUA5) [Ralstonia solanacearum CFBP2957] Length = 207 Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 48/198 (24%), Positives = 84/198 (42%), Gaps = 4/198 (2%) Query: 1 MQIMSITDS-NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 QI T +R+A E + AG +A+PT++ Y LA + A+ RL ++ + Sbjct: 5 FQIHPTTPQGRLIRQAAEIIRAGGLVALPTDSCYALACHLDDKAAVERLRRVRGIDEKHH 64 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 L D+S + A VD + K PGP +L+ LS + KT RV Sbjct: 65 LTLMCRDLSELATFARVDNKQYRVVKAATPGPFVFLLEATKEVP-RRLSHPSRKTIGLRV 123 Query: 120 PCGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P L+ G PL + G + N + + + +++ L+IDGG + + Sbjct: 124 PEHPIPLALMAELGEPLLSATLQLPGDDAPLNEAETIRARLERQLELVIDGGPAPA-EPT 182 Query: 179 TIVNVQCEKKVRILRPGG 196 T++++ + + G Sbjct: 183 TVIDLTGGEPALVREGRG 200 >gi|257094541|ref|YP_003168182.1| Sua5/YciO/YrdC/YwlC family protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047065|gb|ACV36253.1| Sua5/YciO/YrdC/YwlC family protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 208 Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 49/201 (24%), Positives = 82/201 (40%), Gaps = 9/201 (4%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 Q +SI N L++A E + G IA+PT++ Y L + A+ R+ ++ Sbjct: 3 QYLSIHPENPQARLLQRAAEVIGQGGVIALPTDSSYALGCQLGDKAAVERIRSLRGVDDR 62 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 + L D+S + + A VD L K PG T +L+ + KT Sbjct: 63 HHLTLMCRDLSQIGQFARVDNARYRLLKATTPGSYTFILEGTRELP-RRVLHPKRKTIGL 121 Query: 118 RVPCGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 RVP L+ G PL + +G + + ++ LI+DGG G+ Sbjct: 122 RVPAHVVTLALLAQLGEPLLTSTLIVAGDDEPLTEAWEIRDRLDAQLELILDGGRC--GV 179 Query: 177 EST-IVNVQCEKKVRILRPGG 196 E T +V++ + V + G Sbjct: 180 EPTSVVDLTGQLPVLVRAGLG 200 >gi|299771354|ref|YP_003733380.1| yrdC domain protein [Acinetobacter sp. DR1] gi|298701442|gb|ADI92007.1| yrdC domain protein [Acinetobacter sp. DR1] Length = 205 Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 47/197 (23%), Positives = 81/197 (41%), Gaps = 6/197 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A E + AG + PT+ Y + N A+ R+ +I+ + D+S Sbjct: 13 QRLISQAVERIRAGDVVVYPTDAAYAIGCQIGNKNAMERIAQIRGLGPKHQYAIMCCDLS 72 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD + L K P T +L S L KT R+P + L Sbjct: 73 DIATYAKVDNATYRLLKANTPAITTFILPATSEVP-RRLMHPKKKTIGLRIPSNPICQAL 131 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST-IVNVQCE 186 ++ G PL + GQ + + + + + K I + IDGG + ST IV++ E Sbjct: 132 LQELGEPLLTSTLILPGQEDPLDDPYDIENQLDKRIDVFIDGGFGTLT--STSIVDLSGE 189 Query: 187 KKVRILRPGGLEIETLK 203 I+R G ++ + Sbjct: 190 HP-EIIRRGIGDVSAFE 205 >gi|241767937|ref|ZP_04765486.1| Sua5/YciO/YrdC/YwlC family protein [Acidovorax delafieldii 2AN] gi|241360895|gb|EER57709.1| Sua5/YciO/YrdC/YwlC family protein [Acidovorax delafieldii 2AN] Length = 203 Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 77/177 (43%), Gaps = 3/177 (1%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 L++A L G +A+PT++ Y L + A+ RL I++ + L D+S Sbjct: 14 PRLLKQAAALLQKGGVVAVPTDSSYALVCHLDDKDAVDRLRRIRQVDDKHHLTLLCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128 + +A VD L KL PGP T +L+ +S + KT RVP +L+ Sbjct: 74 ELANYARVDNRQYRLLKLGTPGPYTFILEATKEVP-RRVSHPSRKTIGLRVPDRKGLQLL 132 Query: 129 ETY-GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 G PL + +G+ + N + K + I+D G + +T++++ Sbjct: 133 LELHGAPLLATTLIPAGETAPLNDPQEIRERYEKLVDAIVDAGACPL-EPTTVIDLT 188 >gi|225010663|ref|ZP_03701133.1| Sua5/YciO/YrdC/YwlC family protein [Flavobacteria bacterium MS024-3C] gi|225005216|gb|EEG43168.1| Sua5/YciO/YrdC/YwlC family protein [Flavobacteria bacterium MS024-3C] Length = 188 Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 48/188 (25%), Positives = 88/188 (46%), Gaps = 5/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 AL+K+ E L G I PT+TV+G+ D++N A+ +++ +KKR ++C V++++ Sbjct: 4 QEALKKSAEILKQGGVILYPTDTVWGIGCDAKNEAAVEKVFALKKRADTKSMLCLVANVA 63 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 M+++H + P + + P T++ D + + RV F L Sbjct: 64 MLERHIAQVPEAAYDIIDLSEKPTTIIFDQP--IGVAKNLIGPDNSLGIRVAKDKFCSYL 121 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI-GLESTIVNVQCE 186 + PL SAN +GQ + N + +S I K + I+ STI+ + Sbjct: 122 SQNIKGPLVSTSANLAGQPTPKNFQE-ISQEILKGVDYIVPLEPEIHNNTPSTIIKLSNS 180 Query: 187 KKVRILRP 194 V+++RP Sbjct: 181 GLVKVIRP 188 >gi|169796996|ref|YP_001714789.1| hypothetical protein ABAYE2997 [Acinetobacter baumannii AYE] gi|184157091|ref|YP_001845430.1| putative translation factor (SUA5) [Acinetobacter baumannii ACICU] gi|213156599|ref|YP_002318260.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter baumannii AB0057] gi|215484458|ref|YP_002326691.1| yrdC domain protein [Acinetobacter baumannii AB307-0294] gi|260555712|ref|ZP_05827932.1| yrdC domain-containing protein [Acinetobacter baumannii ATCC 19606] gi|301348043|ref|ZP_07228784.1| yrdC domain protein [Acinetobacter baumannii AB056] gi|301510847|ref|ZP_07236084.1| yrdC domain protein [Acinetobacter baumannii AB058] gi|301594335|ref|ZP_07239343.1| yrdC domain protein [Acinetobacter baumannii AB059] gi|332852084|ref|ZP_08433911.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter baumannii 6013150] gi|332867482|ref|ZP_08437635.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter baumannii 6013113] gi|332872667|ref|ZP_08440635.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter baumannii 6014059] gi|169149923|emb|CAM87817.1| conserved hypothetical protein [Acinetobacter baumannii AYE] gi|183208685|gb|ACC56083.1| putative translation factor (SUA5) [Acinetobacter baumannii ACICU] gi|193076588|gb|ABO11251.2| hypothetical protein A1S_0813 [Acinetobacter baumannii ATCC 17978] gi|213055759|gb|ACJ40661.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter baumannii AB0057] gi|213987507|gb|ACJ57806.1| yrdC domain protein [Acinetobacter baumannii AB307-0294] gi|260410623|gb|EEX03921.1| yrdC domain-containing protein [Acinetobacter baumannii ATCC 19606] gi|322506990|gb|ADX02444.1| putative translation factor (SUA5) [Acinetobacter baumannii 1656-2] gi|323516857|gb|ADX91238.1| putative translation factor (SUA5) [Acinetobacter baumannii TCDC-AB0715] gi|332729456|gb|EGJ60795.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter baumannii 6013150] gi|332733899|gb|EGJ65044.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter baumannii 6013113] gi|332739196|gb|EGJ70055.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter baumannii 6014059] Length = 205 Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 46/196 (23%), Positives = 80/196 (40%), Gaps = 4/196 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A E + AG + PT+ Y + N A+ R+ +I+ + D+S Sbjct: 13 QRLIEQAVERIRAGDVVVYPTDAAYAIGCQIGNKNAMERIAQIRGLGPKHQYAIMCCDLS 72 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD + L K P T +L S L KT R+P + L Sbjct: 73 DIATYAKVDNATYRLLKANTPAITTFILPATSEVP-RRLMHPKKKTIGLRIPSNPICQAL 131 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ G PL + GQ + + + + + K I + IDGG + S IV++ E Sbjct: 132 LKELGEPLLTSTLILPGQEDPLDDPYDIENQLAKRIDVFIDGGFGTLTTTS-IVDLSGEH 190 Query: 188 KVRILRPGGLEIETLK 203 I+R G ++ + Sbjct: 191 P-EIIRRGVGDVSAFE 205 >gi|329960182|ref|ZP_08298624.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides fluxus YIT 12057] gi|328532855|gb|EGF59632.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides fluxus YIT 12057] Length = 187 Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 48/189 (25%), Positives = 89/189 (47%), Gaps = 8/189 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 ++KAC+ + G I PT+T++G+ D+ N A+RR+YEIK+R ++ V + Sbjct: 3 EDIKKACQVMREGGVILYPTDTIWGIGCDATNEEAVRRVYEIKQRSDSKAMLVLVDSTAK 62 Query: 70 VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 V + V ++ L PLT++ ++ P A + RV F+K+L Sbjct: 63 VDFYVEDVPEIAWDLID-VTDKPLTIIYS--GARNLAPNLLAEDGSVGIRVTDEEFSKRL 119 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQC 185 + + + SAN SGQ S N +S + + I+ ++G S+I+ ++ Sbjct: 120 CQQFRKAIVSTSANISGQPSPGNFSE-ISEEVKSAVDYIVGYRREEMGRPKPSSIIKLEK 178 Query: 186 EKKVRILRP 194 ++I+R Sbjct: 179 GGVIKIIRE 187 >gi|254448704|ref|ZP_05062162.1| Sua5/YciO/YrdC/YwlC family protein [gamma proteobacterium HTCC5015] gi|198261712|gb|EDY85999.1| Sua5/YciO/YrdC/YwlC family protein [gamma proteobacterium HTCC5015] Length = 206 Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 41/192 (21%), Positives = 75/192 (39%), Gaps = 5/192 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++ E + G + PT++ Y + + A+ R+ I++ + D+S + Sbjct: 17 VQQVAEIIRGGGIVVYPTDSSYAIGCHLDDKRALERIQRIRQVDKHHNFTLMCRDLSELG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130 +A V + L K PGP T + S L+ KT RVP C T ++E Sbjct: 77 NYAKVGNQAFRLLKSHTPGPYTFIFSATSQVP-RRLAHPKKKTIGLRVPDCNITLAILEA 135 Query: 131 YGHPLAIPSANRSGQISITNVK-HILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK- 188 G P+ + V + L + + II+GG +T+V++ + Sbjct: 136 LGEPMLSTTLILPNVEWPELVDVNFLRDQLENAVDAIIEGGQIPA-EPTTVVDLTRDVPE 194 Query: 189 VRILRPGGLEIE 200 V G + E Sbjct: 195 VTRYGRGAADWE 206 >gi|262280082|ref|ZP_06057867.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter calcoaceticus RUH2202] gi|262260433|gb|EEY79166.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter calcoaceticus RUH2202] Length = 205 Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 47/197 (23%), Positives = 81/197 (41%), Gaps = 6/197 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A E + AG + PT+ Y + N A+ R+ +I+ + D+S Sbjct: 13 QRLISQAVERIRAGDVVVYPTDAAYAIGCQIGNKNAMERIAQIRGLGPKHQYAIMCCDLS 72 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD + L K P T +L S L KT R+P + L Sbjct: 73 DIATYAKVDNATYRLLKANTPAITTFILPATSEVP-RRLMHPKKKTIGLRIPSNPICQAL 131 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST-IVNVQCE 186 ++ G PL + GQ + + + + + K I + IDGG + ST IV++ E Sbjct: 132 LKELGEPLLTSTLILPGQEDPLDDPYDIENQLDKRIDVFIDGGFGTLT--STSIVDLSGE 189 Query: 187 KKVRILRPGGLEIETLK 203 I+R G ++ + Sbjct: 190 HP-EIIRRGIGDVSAFE 205 >gi|91212709|ref|YP_542695.1| putative ribosome maturation factor [Escherichia coli UTI89] gi|110643521|ref|YP_671251.1| putative ribosome maturation factor [Escherichia coli 536] gi|117625565|ref|YP_858888.1| putative ribosome maturation factor [Escherichia coli APEC O1] gi|157154846|ref|YP_001464750.1| putative ribosome maturation factor [Escherichia coli E24377A] gi|187733572|ref|YP_001881966.1| putative ribosome maturation factor [Shigella boydii CDC 3083-94] gi|188494830|ref|ZP_03002100.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli 53638] gi|237703012|ref|ZP_04533493.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia sp. 3_2_53FAA] gi|293412701|ref|ZP_06655369.1| conserved hypothetical protein [Escherichia coli B354] gi|293453601|ref|ZP_06664020.1| translation factor [Escherichia coli B088] gi|331674791|ref|ZP_08375548.1| protein YrdC [Escherichia coli TA280] gi|331679351|ref|ZP_08380021.1| protein YrdC [Escherichia coli H591] gi|332281837|ref|ZP_08394250.1| Sua5/YciO/YrdC family protein [Shigella sp. D9] gi|91074283|gb|ABE09164.1| protein YrdC [Escherichia coli UTI89] gi|110345113|gb|ABG71350.1| Sua5/YciO/YrdC family protein [Escherichia coli 536] gi|115514689|gb|ABJ02764.1| putative ribosome maturation factor [Escherichia coli APEC O1] gi|157076876|gb|ABV16584.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli E24377A] gi|187430564|gb|ACD09838.1| Sua5/YciO/YrdC/YwlC family protein [Shigella boydii CDC 3083-94] gi|188490029|gb|EDU65132.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli 53638] gi|226902276|gb|EEH88535.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia sp. 3_2_53FAA] gi|291321727|gb|EFE61158.1| translation factor [Escherichia coli B088] gi|291468348|gb|EFF10841.1| conserved hypothetical protein [Escherichia coli B354] gi|294492223|gb|ADE90979.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli IHE3034] gi|331067700|gb|EGI39098.1| protein YrdC [Escherichia coli TA280] gi|331072523|gb|EGI43848.1| protein YrdC [Escherichia coli H591] gi|332104189|gb|EGJ07535.1| Sua5/YciO/YrdC family protein [Shigella sp. D9] Length = 205 Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 50/185 (27%), Positives = 76/185 (41%), Gaps = 8/185 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +A+ A + L+ IA PTE V+G+ D + TA+ RL E+K+RP LI ++ Sbjct: 23 DAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQ 82 Query: 70 VKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 +K + L+ + WPGP+T V +TT T + RV Sbjct: 83 LKPYIDDTMLTDAQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVV 140 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 L + YG PL SAN SG V + + P ++ G S I + Sbjct: 141 ALCQAYGKPLVSTSANLSGLPPCRTVDEV-RAQFGAAFP-VVPGETGGRLNPSEIRDALT 198 Query: 186 EKKVR 190 + R Sbjct: 199 GELFR 203 >gi|16131163|ref|NP_417741.1| tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein [Escherichia coli str. K-12 substr. MG1655] gi|89110728|ref|AP_004508.1| dsRNA-binding protein [Escherichia coli str. K-12 substr. W3110] gi|170018482|ref|YP_001723436.1| putative ribosome maturation factor [Escherichia coli ATCC 8739] gi|170082803|ref|YP_001732123.1| ribosome maturation factor [Escherichia coli str. K-12 substr. DH10B] gi|194440014|ref|ZP_03072072.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli 101-1] gi|238902373|ref|YP_002928169.1| putative ribosome maturation factor [Escherichia coli BW2952] gi|253771894|ref|YP_003034725.1| ribosome maturation factor [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254163210|ref|YP_003046318.1| putative ribosome maturation factor [Escherichia coli B str. REL606] gi|256025990|ref|ZP_05439855.1| putative ribosome maturation factor [Escherichia sp. 4_1_40B] gi|297517900|ref|ZP_06936286.1| putative ribosome maturation factor [Escherichia coli OP50] gi|300932175|ref|ZP_07147455.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 187-1] gi|300946504|ref|ZP_07160770.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 116-1] gi|300955320|ref|ZP_07167702.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 175-1] gi|301021208|ref|ZP_07185242.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 196-1] gi|301643898|ref|ZP_07243928.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 146-1] gi|307139965|ref|ZP_07499321.1| putative ribosome maturation factor [Escherichia coli H736] gi|312972455|ref|ZP_07786629.1| ribosome maturation factor [Escherichia coli 1827-70] gi|2851671|sp|P45748|RIMN_ECOLI RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=Ribosome maturation factor RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|212277674|sp|B1X6D5|RIMN_ECODH RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|212277678|sp|B1IQ17|RIMN_ECOLC RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|212277722|sp|A8A587|RIMN_ECOHS RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|2367210|gb|AAC76307.1| tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein [Escherichia coli str. K-12 substr. MG1655] gi|85676759|dbj|BAE78009.1| dsRNA-binding protein [Escherichia coli str. K12 substr. W3110] gi|169753410|gb|ACA76109.1| SUA5/yciO/yrdC domain [Escherichia coli ATCC 8739] gi|169890638|gb|ACB04345.1| predicted ribosome maturation factor [Escherichia coli str. K-12 substr. DH10B] gi|194421066|gb|EDX37095.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli 101-1] gi|238863080|gb|ACR65078.1| predicted ribosome maturation factor [Escherichia coli BW2952] gi|242378809|emb|CAQ33601.1| protein involved in synthesis of threonylcarbamoyladenosine-modified tRNA [Escherichia coli BL21(DE3)] gi|253322938|gb|ACT27540.1| SUA5/yciO/yrdC domain protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975111|gb|ACT40782.1| predicted ribosome maturation factor [Escherichia coli B str. REL606] gi|253979267|gb|ACT44937.1| predicted ribosome maturation factor [Escherichia coli BL21(DE3)] gi|260447699|gb|ACX38121.1| SUA5/yciO/yrdC domain protein [Escherichia coli DH1] gi|299881616|gb|EFI89827.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 196-1] gi|300317764|gb|EFJ67548.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 175-1] gi|300453810|gb|EFK17430.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 116-1] gi|300460059|gb|EFK23552.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 187-1] gi|301077741|gb|EFK92547.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 146-1] gi|309703694|emb|CBJ03035.1| conserved hypothetical protein [Escherichia coli ETEC H10407] gi|310334832|gb|EFQ01037.1| ribosome maturation factor [Escherichia coli 1827-70] gi|315137858|dbj|BAJ45017.1| dsRNA-binding protein [Escherichia coli DH1] gi|315617086|gb|EFU97696.1| ribosome maturation factor [Escherichia coli 3431] gi|323934519|gb|EGB30927.1| yrdC domain-containing protein [Escherichia coli E1520] gi|323939296|gb|EGB35508.1| yrdC domain-containing protein [Escherichia coli E482] gi|323959567|gb|EGB55220.1| yrdC domain-containing protein [Escherichia coli H489] gi|323970086|gb|EGB65360.1| yrdC domain-containing protein [Escherichia coli TA007] gi|332345230|gb|AEE58564.1| ribosome maturation factor protein [Escherichia coli UMNK88] Length = 190 Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 49/185 (26%), Positives = 74/185 (40%), Gaps = 8/185 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +A+ A + L+ IA PTE V+G+ D + TA+ RL E+K+RP LI ++ Sbjct: 8 DAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQ 67 Query: 70 VKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 +K + + WPGP+T V +TT T + RV Sbjct: 68 LKPYIDDTMLTDVQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVV 125 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 L + YG PL SAN SG V + + P ++ G S I + Sbjct: 126 ALCQAYGKPLVSTSANLSGLPPCRTVDEV-RAQFGAAFP-VVPGETGGRLNPSEIRDALT 183 Query: 186 EKKVR 190 + R Sbjct: 184 GELFR 188 >gi|160890843|ref|ZP_02071846.1| hypothetical protein BACUNI_03288 [Bacteroides uniformis ATCC 8492] gi|270295850|ref|ZP_06202050.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. D20] gi|156859842|gb|EDO53273.1| hypothetical protein BACUNI_03288 [Bacteroides uniformis ATCC 8492] gi|270273254|gb|EFA19116.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. D20] Length = 187 Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 49/189 (25%), Positives = 87/189 (46%), Gaps = 8/189 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 ++KAC+ + G I PT+T++G+ D+ N A+RR+YEIK+R ++ V Sbjct: 3 EDIKKACQVMSEGGVILYPTDTIWGIGCDATNEEAVRRVYEIKQRSDSKAMLVLVDSPVK 62 Query: 70 VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 V + V ++ L + PLT++ ++ P A + RV F+K+L Sbjct: 63 VDFYVQDVPEVAWDLIE-LADKPLTIIYS--GARNLAPNLLAEDGSVGIRVTSEAFSKRL 119 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQC 185 + + + SAN SGQ S N +S I + I+ + G S+I+ + Sbjct: 120 CQQFRKAIVSTSANVSGQPSPGNFSE-ISEDIKSAVDYIVGYRQEETGRPKPSSIIKLGK 178 Query: 186 EKKVRILRP 194 ++I+R Sbjct: 179 GGVIKIIRE 187 >gi|309379075|emb|CBX22377.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 206 Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 77/189 (40%), Gaps = 5/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +R+A E L+ G + PT++ Y L + A+ R+ I+K + L +D+S Sbjct: 14 ERLIRQAVEILNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A +D + K PGP T +L L KT R+P + L Sbjct: 74 ELGTYAEIDNVQFRQLKAATPGPYTFILQATKDVPARAL-HPKRKTIGLRIPGNAVAQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL + + + + + L+IDGG +T++++ Sbjct: 133 LEELGEPLLSCTLMLPEDGEPLTDPYEIRERLEHAVDLVIDGGWCGTD-PATVIDMTDGT 191 Query: 188 KVRILRPGG 196 ++ +R G Sbjct: 192 EL--VRRGC 198 >gi|157372740|ref|YP_001480729.1| putative ribosome maturation factor [Serratia proteamaculans 568] gi|212288231|sp|A8GKG1|RIMN_SERP5 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|157324504|gb|ABV43601.1| SUA5/yciO/yrdC domain [Serratia proteamaculans 568] Length = 189 Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats. Identities = 48/180 (26%), Positives = 73/180 (40%), Gaps = 8/180 (4%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 + L IA PTE V+GL D + A+ L +K+RP LI +D + + + Sbjct: 12 IIDALHNQQVIAYPTEAVFGLGCDPDSEQAVNALLALKQRPWEKGLILIAADYAQLTPYI 71 Query: 75 SVDPLSLHL---AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 L+ WPGP+T V+ S T L T + RV ++L Sbjct: 72 DDTALNEQQRATMFASWPGPVTWVIPARSET--SRLLTGRFNSLAVRVSDHPLVQQLCRQ 129 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 +G PL SAN SGQ + + PL + G + S I +V +++R Sbjct: 130 FGKPLVSTSANLSGQEPCRSADEV-QQQFGAAFPL-LAGSVGGRLNPSEIRDVLTGEQIR 187 >gi|317479725|ref|ZP_07938847.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 4_1_36] gi|316904095|gb|EFV25927.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 4_1_36] Length = 197 Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats. Identities = 49/189 (25%), Positives = 87/189 (46%), Gaps = 8/189 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 ++KAC+ + G I PT+T++G+ D+ N A+RR+YEIK+R ++ V Sbjct: 13 EDIKKACQVMSEGGVILYPTDTIWGIGCDATNEEAVRRVYEIKQRSDSKAMLVLVDSPVK 72 Query: 70 VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 V + V ++ L + PLT++ ++ P A + RV F+K+L Sbjct: 73 VDFYVQDVPEVAWDLIE-LADKPLTIIYS--GARNLAPNLLAEDGSVGIRVTSEAFSKRL 129 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQC 185 + + + SAN SGQ S N +S I + I+ + G S+I+ + Sbjct: 130 CQQFRKAIVSTSANVSGQPSPGNFSE-ISEDIKSAVDYIVGYRQEETGRPKPSSIIKLGK 188 Query: 186 EKKVRILRP 194 ++I+R Sbjct: 189 GGVIKIIRE 197 >gi|84496393|ref|ZP_00995247.1| hypothetical protein JNB_02700 [Janibacter sp. HTCC2649] gi|84383161|gb|EAP99042.1| hypothetical protein JNB_02700 [Janibacter sp. HTCC2649] Length = 207 Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats. Identities = 38/196 (19%), Positives = 75/196 (38%), Gaps = 4/196 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++++A + L G IA PT++ Y L N +A R+ +I+K + +D + Sbjct: 14 PRSIKQAVDTLREGGLIAYPTDSGYALGAALGNQSAKDRIRDIRKLDDKHHYTLVCADFA 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + VD K PGP T +L + KT R+P + L Sbjct: 74 QLGHFVHVDNAVFRAVKASTPGPYTFILPATGEVP-RRVLHPKKKTVGVRIPEHPVVQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G P+ + G+ + + + ++ID G +T++++ + Sbjct: 133 LAELGEPMLTSTLILPGETEPMTDGWQVKEELDHVVDVVIDSGECGT-EPTTVIDLSGD- 190 Query: 188 KVRILRPGGLEIETLK 203 +LR G + + Sbjct: 191 VAEVLRVGAGDPSRFE 206 >gi|292492352|ref|YP_003527791.1| Sua5/YciO/YrdC/YwlC family protein [Nitrosococcus halophilus Nc4] gi|291580947|gb|ADE15404.1| Sua5/YciO/YrdC/YwlC family protein [Nitrosococcus halophilus Nc4] Length = 209 Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats. Identities = 42/188 (22%), Positives = 70/188 (37%), Gaps = 4/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 L +A L I PT++ Y L N A R+ ++ + D+S Sbjct: 14 QRLLNQAVTILRQEGLIVYPTDSGYALGCQVGNKAAADRIRHLRGLGTRHEFSLVGRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A V + L K PG T + L +T R+P T+ L Sbjct: 74 ELSLYARVGNSAFRLLKALTPGAYTFIFKATREVP-RRLQDPKRRTIGIRIPDNSITQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + G+ + I ++ L+IDGG +T+V++ E Sbjct: 133 LAALGEPLISSTLILPGEEMPLTDPEGIRDRIGSQVDLVIDGGYCGF-EPTTVVDL-VED 190 Query: 188 KVRILRPG 195 +I+R G Sbjct: 191 IPKIIREG 198 >gi|218550558|ref|YP_002384349.1| ribosome maturation factor [Escherichia fergusonii ATCC 35469] gi|218358099|emb|CAQ90746.1| putative ribosome maturation factor [Escherichia fergusonii ATCC 35469] gi|323966244|gb|EGB61679.1| yrdC domain-containing protein [Escherichia coli M863] gi|323974765|gb|EGB69878.1| yrdC domain-containing protein [Escherichia coli TW10509] gi|324111961|gb|EGC05940.1| yrdC domain-containing protein [Escherichia fergusonii B253] gi|325498851|gb|EGC96710.1| ribosome maturation factor [Escherichia fergusonii ECD227] gi|327250931|gb|EGE62624.1| ribosome maturation factor [Escherichia coli STEC_7v] Length = 190 Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats. Identities = 49/185 (26%), Positives = 73/185 (39%), Gaps = 8/185 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +A+ A + L+ IA PTE V+G+ D + TA+ RL E+K+RP LI ++ Sbjct: 8 DAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQ 67 Query: 70 VKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 +K + WPGP+T V +TT T + RV Sbjct: 68 LKPYIDDCMLTDAQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVV 125 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 L + YG PL SAN SG V + + P ++ G S I + Sbjct: 126 ALCQAYGKPLVSTSANLSGLPPCRTVDEV-RAQFGAAFP-VVPGETGGRLNPSEIRDALT 183 Query: 186 EKKVR 190 + R Sbjct: 184 GELFR 188 >gi|291284641|ref|YP_003501459.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O55:H7 str. CB9615] gi|290764514|gb|ADD58475.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O55:H7 str. CB9615] Length = 205 Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats. Identities = 49/185 (26%), Positives = 74/185 (40%), Gaps = 8/185 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +A+ A + L+ IA PTE V+G+ D + TA+ RL E+K+RP LI ++ Sbjct: 23 DAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQ 82 Query: 70 VKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 +K + + WPGP+T V +TT T + RV Sbjct: 83 LKPYIDDTMLTDVQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVV 140 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 L + YG PL SAN SG V + + P ++ G S I + Sbjct: 141 ALCQAYGKPLVSTSANLSGLPPCRTVDEV-RAQFGAAFP-VVPGETGGRLNPSEIRDALT 198 Query: 186 EKKVR 190 + R Sbjct: 199 GELFR 203 >gi|331664895|ref|ZP_08365796.1| protein YrdC [Escherichia coli TA143] gi|331057405|gb|EGI29391.1| protein YrdC [Escherichia coli TA143] Length = 190 Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats. Identities = 48/185 (25%), Positives = 72/185 (38%), Gaps = 8/185 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +A+ A + L+ IA PTE V+G+ D + A+ RL E+K+RP LI ++ Sbjct: 8 DAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSEIAVMRLLELKQRPVDKGLILIAANYEQ 67 Query: 70 VKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 +K + WPGP+T V +TT T + RV Sbjct: 68 LKPYIDDTMLTDAQRETIFSHWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVV 125 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 L + YG PL SAN SG V + + P ++ G S I + Sbjct: 126 ALCQAYGKPLVSTSANLSGLPPCRTVDEV-RAQFGAAFP-VVPGETGGRLNPSEIRDALT 183 Query: 186 EKKVR 190 + R Sbjct: 184 GELFR 188 >gi|240081150|ref|ZP_04725693.1| hypothetical protein NgonF_07548 [Neisseria gonorrhoeae FA19] Length = 206 Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats. Identities = 40/188 (21%), Positives = 77/188 (40%), Gaps = 5/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E ++ G + PT++ Y L + A+ R+ I+K + L +D+S Sbjct: 14 ERLIKQAVEIINQGGVVVYPTDSCYALGCKLGDKVAMERILSIRKIDLKHHLTLMCADLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A +D + K PGP T +L L KT R+P + L Sbjct: 74 ELGTYAKIDNVQFRQLKAATPGPYTFILQATKDAPARAL-HPKRKTIGLRIPDNAVAQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL + + + + + L+IDGG +T++++ Sbjct: 133 LEELGGPLLSCTLMLPEDGEPLTDPYEIRERLEHAVDLVIDGGWCGTD-PTTVIDMTDGT 191 Query: 188 KVRILRPG 195 ++ +R G Sbjct: 192 EL--VRRG 197 >gi|13096287|pdb|1HRU|A Chain A, The Structure Of The Yrdc Gene Product From E.Coli gi|13096288|pdb|1HRU|B Chain B, The Structure Of The Yrdc Gene Product From E.Coli Length = 188 Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats. Identities = 50/185 (27%), Positives = 76/185 (41%), Gaps = 8/185 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +A+ A + L+ IA PTE V+G+ D + TA+ RL E+K+RP LI ++ Sbjct: 8 DAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVXRLLELKQRPVDKGLILIAANYEQ 67 Query: 70 VKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 +K + L+ + WPGP+T V +TT T + RV Sbjct: 68 LKPYIDDTXLTDVQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVV 125 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 L + YG PL SAN SG V + + P ++ G S I + Sbjct: 126 ALCQAYGKPLVSTSANLSGLPPCRTVDEV-RAQFGAAFP-VVPGETGGRLNPSEIRDALT 183 Query: 186 EKKVR 190 + R Sbjct: 184 GELFR 188 >gi|289191931|ref|YP_003457872.1| Sua5/YciO/YrdC/YwlC family protein [Methanocaldococcus sp. FS406-22] gi|288938381|gb|ADC69136.1| Sua5/YciO/YrdC/YwlC family protein [Methanocaldococcus sp. FS406-22] Length = 216 Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats. Identities = 59/213 (27%), Positives = 102/213 (47%), Gaps = 14/213 (6%) Query: 2 QIMSIT--DSNALRKACEFLD----AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP 55 +I+ I D N +K +FL G I T+T+YG++ ++ + A++++YEIK+R Sbjct: 6 KIIKIYELDENERKKVLDFLKEEILNGKIIICGTDTLYGISANALDEKAVKKVYEIKRRD 65 Query: 56 AMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115 PL V D S ++K+A V+ L+ + F PG LT++L + P A Sbjct: 66 FSKPLSICVKDKSEIEKYAYVNDLAKKIIDKFLPGALTIIL---KKKPVIPDIVAK-DYV 121 Query: 116 CFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R+P + E PL SAN SG+ S T+V + I K + ++D G K Sbjct: 122 GIRIPDEPIIR--ELSIVPLTTTSANISGKESPTSVNE-IDEEILKNVDYVVDIGKCKYS 178 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISV 208 ST + + K+ +R G + +++ ++ Sbjct: 179 KPST-IIKIEDDKIIPIREGVIPFSKIRKVANI 210 >gi|297180818|gb|ADI17024.1| putative translation factor (sua5) [uncultured Vibrionales bacterium HF0010_22E23] Length = 197 Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats. Identities = 42/183 (22%), Positives = 72/183 (39%), Gaps = 7/183 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + E L G IA PTE V+G+ D + AI L +K+R LI S + + Sbjct: 16 VEQCVEALRRGEVIAYPTEGVFGVGCDPDDSRAIEALLAVKERRKAKGLILIASSLEQLN 75 Query: 72 KHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127 + + L K WPGP+T V+ + + T RV + L Sbjct: 76 GYIDMSQLPDSVKEQVKASWPGPVTWVMP--KGEKVTSWVSGQFDTVAVRVSDHPDVQAL 133 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + +G P+ SAN +G+ +V + + + + + DG + I + Sbjct: 134 CQAFGKPITSTSANLAGEPPCMSVADVELH-LSERVKTVFDGKTGNRDKPTEIRDALTGN 192 Query: 188 KVR 190 +R Sbjct: 193 ILR 195 >gi|156083739|ref|XP_001609353.1| translation factor Sua5 [Babesia bovis T2Bo] gi|154796604|gb|EDO05785.1| translation factor Sua5, putative [Babesia bovis] Length = 453 Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats. Identities = 60/195 (30%), Positives = 97/195 (49%), Gaps = 16/195 (8%) Query: 4 MSITDSNALRKACEFLDA-----GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58 +++TD++ + + L + G IA+PTETVYGLA + ++ R++E+K RP + Sbjct: 15 VTLTDTSI--ETLDLLKSHLSIPGNLIALPTETVYGLAANGLCEKSVLRIFEVKGRPLTD 72 Query: 59 PLICHVSDISMVKKHASVDPLS-----LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK 113 P+I HV L L+L+ F PGPLT++ + I + +AN Sbjct: 73 PVILHVPSFEDALSSIFDADLYTACVVLYLSLHFSPGPLTII--TRGRSGIPRVVSANSG 130 Query: 114 TACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172 R P + +++ G PLA PSAN+ G IS T H++S ++DGG Sbjct: 131 YPAVRCPNHPDAQAILKHIGFPLAAPSANKFGHISPTTADHVISE-FKDVHMYVVDGGSC 189 Query: 173 KIGLESTIVNVQCEK 187 +GLEST+ ++ Sbjct: 190 SLGLESTVAKLESTG 204 Score = 67.4 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 35/166 (21%), Positives = 65/166 (39%), Gaps = 29/166 (17%) Query: 188 KVRILRPGGLEIETLKRAISVEL--------EYCVDETSTPQSPGMLKSHYAPRSQVRLR 239 ++ ILRPG + LK + L T SPGM+ +HYAP L Sbjct: 275 RITILRPGFITEADLKNIFANSLFSVSVSRKTVYSSGTDVCDSPGMILTHYAPSVPTYLI 334 Query: 240 A------IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDS- 292 + P ++ + + N ++ + ++ + A NL+ ++ A+++ Sbjct: 335 SGTVPLGTEKVPANRIVMIDSDGMFNDKSGLFLSYIALGSTDENMAHNLYGALREAEEAA 394 Query: 293 ----------GA--SSIAFSSIPNHG--LGIAINNRLERAAAPRNQ 324 GA ++I S + G L + +RL RA++ R Sbjct: 395 LCYNKPLGDLGATDTAIIVISYKDRGTELNATLRDRLIRASSGRTI 440 >gi|157162756|ref|YP_001460074.1| putative ribosome maturation factor [Escherichia coli HS] gi|331643978|ref|ZP_08345107.1| protein YrdC [Escherichia coli H736] gi|157068436|gb|ABV07691.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli HS] gi|331036272|gb|EGI08498.1| protein YrdC [Escherichia coli H736] Length = 205 Score = 156 bits (396), Expect = 3e-36, Method: Composition-based stats. Identities = 49/185 (26%), Positives = 74/185 (40%), Gaps = 8/185 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +A+ A + L+ IA PTE V+G+ D + TA+ RL E+K+RP LI ++ Sbjct: 23 DAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQ 82 Query: 70 VKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 +K + + WPGP+T V +TT T + RV Sbjct: 83 LKPYIDDTMLTDVQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVV 140 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 L + YG PL SAN SG V + + P ++ G S I + Sbjct: 141 ALCQAYGKPLVSTSANLSGLPPCRTVDEV-RAQFGAAFP-VVPGETGGRLNPSEIRDALT 198 Query: 186 EKKVR 190 + R Sbjct: 199 GELFR 203 >gi|224535867|ref|ZP_03676406.1| hypothetical protein BACCELL_00731 [Bacteroides cellulosilyticus DSM 14838] gi|224522590|gb|EEF91695.1| hypothetical protein BACCELL_00731 [Bacteroides cellulosilyticus DSM 14838] Length = 187 Score = 156 bits (396), Expect = 3e-36, Method: Composition-based stats. Identities = 47/189 (24%), Positives = 91/189 (48%), Gaps = 8/189 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 ++KAC+ ++ G I PT+T++G+ D+ N A+RR+YEIK+R ++ V Sbjct: 3 EDIKKACQVMNEGGVILYPTDTIWGIGCDATNEEAVRRVYEIKQRSDSKAMLVLVDSPVK 62 Query: 70 VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 V + V ++ L ++ PLT++ ++ P A + RV GF+K+L Sbjct: 63 VDFYVQDVPEVAWDLIEVA-DKPLTIIYS--GARNLAPNLIAEDGSVGIRVTNEGFSKRL 119 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQC 185 + + + SAN SGQ S N ++ + + ++ ++G S+I+ + Sbjct: 120 CQQFRKAIVSTSANISGQPSPANYSE-ITEELKSMVDYVVGYRREEMGHPKPSSIIKLDK 178 Query: 186 EKKVRILRP 194 ++I+R Sbjct: 179 GGVIKIIRE 187 >gi|319947035|ref|ZP_08021269.1| Sua5/YciO/YrdC family protein [Streptococcus australis ATCC 700641] gi|319747083|gb|EFV99342.1| Sua5/YciO/YrdC family protein [Streptococcus australis ATCC 700641] Length = 203 Score = 156 bits (396), Expect = 3e-36, Method: Composition-based stats. Identities = 61/200 (30%), Positives = 100/200 (50%), Gaps = 9/200 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-VD 77 L+AG + +PTETVYGL + + A+ ++Y +K+RP + ++S ++ ++ Sbjct: 8 LEAGYAVVLPTETVYGLFAKALDKAAVDQVYALKQRPREKAMNLNISSEEGIRFYSKNQP 67 Query: 78 PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLA 136 P L F PGPLT++L+ + + + + T FR+P T +LI G PL Sbjct: 68 PYLSKLIASFLPGPLTIILE--ANEKVPAWINSGMATVGFRMPAHPKTLELIHKTG-PLI 124 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SG+ S T + IL + L D ++ G +STI+++ K RILR G Sbjct: 125 GPSANLSGKASGTQCQQILKELGHGVLGLEDDSFLT--GQDSTILDLTG-PKARILRQGA 181 Query: 197 LEIETL-KRAISVELEYCVD 215 + + +R + E D Sbjct: 182 ITRSEIFQRVPEIPFEEEED 201 >gi|325294265|ref|YP_004280779.1| Sua5/YciO/YrdC/YwlC family protein [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064713|gb|ADY72720.1| Sua5/YciO/YrdC/YwlC family protein [Desulfurobacterium thermolithotrophum DSM 11699] Length = 203 Score = 156 bits (396), Expect = 4e-36, Method: Composition-based stats. Identities = 61/209 (29%), Positives = 102/209 (48%), Gaps = 12/209 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 MQ++S D + K + L AG I PT+T++G+ ++ + +++LY +KKR PL Sbjct: 1 MQVLSKED---IEKISQILRAGELICSPTDTLFGILGNALDKEVVKKLYSVKKRDVNKPL 57 Query: 61 ICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I S I + + PL L+ K +P P+T++L L + + R+ Sbjct: 58 IVLFSSIEQLVNFGVLVPLKYLNGLKKLYPAPVTVILPLSKESPFRKVFQ--RDNLAVRI 115 Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P F +KLI+ PL PSAN G++ N K + I I+G +S+ S Sbjct: 116 PKDDFLQKLIKK-TFPLFAPSANPQGELPAKNCKEC-KNYFDGVINFCIEGKVSEA--PS 171 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAIS 207 TIV++ E V ++R G ++ E + +S Sbjct: 172 TIVDLTGETPV-LIRKGIVKFEKVLEVLS 199 >gi|325860005|ref|ZP_08173132.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella denticola CRIS 18C-A] gi|327313739|ref|YP_004329176.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella denticola F0289] gi|325482531|gb|EGC85537.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella denticola CRIS 18C-A] gi|326944894|gb|AEA20779.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella denticola F0289] Length = 189 Score = 156 bits (396), Expect = 4e-36, Method: Composition-based stats. Identities = 46/192 (23%), Positives = 87/192 (45%), Gaps = 8/192 (4%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + + ++KA + + G I PT+TV+G+ D+ N A+ ++Y +K+R LIC V Sbjct: 1 MKQEDDIKKAIDVMKNGGIILYPTDTVWGIGCDATNAEAVAKVYALKRRDDSKALICLVD 60 Query: 66 DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GF 123 ++++ SV ++ L P TL+LD ++ A + R+ F Sbjct: 61 SDDRLQRYVRSVPDVAWQLIDAV-DKPTTLILD--GAVNLAENLIAQDGSIGMRITKEPF 117 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--GLESTIV 181 + +L + + SAN SG+ S N I I + + + + S+IV Sbjct: 118 SHELCYRFQKAIVSTSANISGEPSAQNYCDISQEIIDG-VDYVCESRRQEHKPHTPSSIV 176 Query: 182 NVQCEKKVRILR 193 + + +V+I+R Sbjct: 177 KLGIDGQVKIIR 188 >gi|313848034|emb|CBY17032.1| hypothetical protein Cpsi_5031 [Chlamydophila psittaci RD1] Length = 292 Score = 156 bits (396), Expect = 4e-36, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 102/206 (49%), Gaps = 16/206 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 LR+A ++LD G IA PT+TVYGL V P A ++Y++K R L+ +V+ I ++ Sbjct: 14 LRQAADYLDQGKVIAFPTDTVYGLGVALNYPNAEEKIYDLKHRDQGKSLVVYVNTIEDIE 73 Query: 72 KH--ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGFTKKLI 128 K ++ +L L++ F PGPLTL++D H + + FR+ KLI Sbjct: 74 KFSGCTLSTHALKLSQKFLPGPLTLLVD-------HKNPRFHQEKLGFRILSIPIVNKLI 126 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 + G PL SAN S K +L ++I + G GLEST++ Sbjct: 127 DLAG-PLLGTSANISNFPPAITSKEVLEDFCQEDI--CVIPGCCSYGLESTVI---SADP 180 Query: 189 VRILRPGGLEIETLKRAISVELEYCV 214 ++I R G + + ++ + +++ C+ Sbjct: 181 LKIYREGMIPHQVIEDVVGEKIDACL 206 >gi|332749752|gb|EGJ80167.1| ribosome maturation factor [Shigella flexneri 4343-70] gi|332998321|gb|EGK17921.1| ribosome maturation factor [Shigella flexneri K-218] Length = 190 Score = 156 bits (396), Expect = 4e-36, Method: Composition-based stats. Identities = 48/185 (25%), Positives = 73/185 (39%), Gaps = 8/185 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +A+ A + L+ IA PTE V+G+ D + TA+ RL E+K+RP LI ++ Sbjct: 8 DAIAAAIDVLNEKRVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQ 67 Query: 70 VKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 +K + + WPGP+T V +TT T + RV Sbjct: 68 LKPYIDDTMLTDVQRETIFSCWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVV 125 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 L + Y PL SAN SG V + + P ++ G S I + Sbjct: 126 ALCQAYDKPLVSTSANLSGLPPCRTVDEV-RAQFGAAFP-VVPGETGGRLNPSEIRDALT 183 Query: 186 EKKVR 190 + R Sbjct: 184 GELFR 188 >gi|317485885|ref|ZP_07944745.1| Sua5/YciO/YrdC/YwlC family protein [Bilophila wadsworthia 3_1_6] gi|316922859|gb|EFV44085.1| Sua5/YciO/YrdC/YwlC family protein [Bilophila wadsworthia 3_1_6] Length = 217 Score = 156 bits (396), Expect = 4e-36, Method: Composition-based stats. Identities = 49/196 (25%), Positives = 87/196 (44%), Gaps = 3/196 (1%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 ++A E + G P+ PTET + L + + A R+Y K R + PL + D + Sbjct: 16 DFKRAVELMLDGHPVIFPTETFFALGSRALDADATARVYRAKHRSTVRPLPLILGDWEQL 75 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 A V + L K FWPGPL+++ + + + T R+ + L + Sbjct: 76 DMIAKVHDELMPLLKRFWPGPLSVIFP--ARLRVPDILTGGTGRVAVRLSSHPVARALAQ 133 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G P+ SAN SG ++ +V + I + ++ + + GL ST+V + ++ Sbjct: 134 AVGEPITSSSANISGNPAVVSVNQLDEELIASVMGILDEPPVPAGGLPSTLVERMEDGRL 193 Query: 190 RILRPGGLEIETLKRA 205 R+LR G + + A Sbjct: 194 RLLRAGAVTSAQIAEA 209 >gi|218691569|ref|YP_002399781.1| putative ribosome maturation factor [Escherichia coli ED1a] gi|227883414|ref|ZP_04001219.1| ribosome maturation factor [Escherichia coli 83972] gi|300979819|ref|ZP_07174721.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 45-1] gi|301046053|ref|ZP_07193232.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 185-1] gi|331649079|ref|ZP_08350165.1| protein YrdC [Escherichia coli M605] gi|212277724|sp|Q8FD17|RIMN_ECOL6 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|218429133|emb|CAR10085.2| putative ribosome maturation factor [Escherichia coli ED1a] gi|227839558|gb|EEJ50024.1| ribosome maturation factor [Escherichia coli 83972] gi|281180317|dbj|BAI56647.1| conserved hypothetical protein [Escherichia coli SE15] gi|300301938|gb|EFJ58323.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 185-1] gi|300409425|gb|EFJ92963.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 45-1] gi|315292342|gb|EFU51694.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 153-1] gi|324009048|gb|EGB78267.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 57-2] gi|330909327|gb|EGH37841.1| YrdC subfamily, required for N6-threonylcarbamoyl adenosine t(6)A37 modification in tRNA [Escherichia coli AA86] gi|331041577|gb|EGI13721.1| protein YrdC [Escherichia coli M605] Length = 190 Score = 156 bits (396), Expect = 4e-36, Method: Composition-based stats. Identities = 50/185 (27%), Positives = 76/185 (41%), Gaps = 8/185 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +A+ A + L+ IA PTE V+G+ D + TA+ RL E+K+RP LI ++ Sbjct: 8 DAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKRRPVDKGLILIAANYEQ 67 Query: 70 VKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 +K + L+ + WPGP+T V +TT T + RV Sbjct: 68 LKPYIDDTMLTDAQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVV 125 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 L + YG PL SAN SG V + + P ++ G S I + Sbjct: 126 ALCQAYGKPLVSTSANLSGLPPCRTVDEV-RAQFGAAFP-VVPGETGGRLNPSEIRDALT 183 Query: 186 EKKVR 190 + R Sbjct: 184 GELFR 188 >gi|213865417|ref|ZP_03387536.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 182 Score = 156 bits (396), Expect = 4e-36, Method: Composition-based stats. Identities = 48/182 (26%), Positives = 72/182 (39%), Gaps = 8/182 (4%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 + L+ IA PTE V+G+ D + TA+ RL +K+RP LI + +K Sbjct: 3 AAVVDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIAASFEQLKP 62 Query: 73 HASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + L+ K WPGP+T V +TT T + RV L Sbjct: 63 YIDDSILTAAQRKAVFDCWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTNHPLVVALC 120 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 YG PL SAN SG V+ + + + P +++G S I + + Sbjct: 121 NAYGKPLVSTSANLSGLPPCRTVEEV-RAQFGDDFP-VVEGATGGRLNPSEIRDALTGEL 178 Query: 189 VR 190 R Sbjct: 179 FR 180 >gi|239501228|ref|ZP_04660538.1| yrdC domain protein [Acinetobacter baumannii AB900] Length = 205 Score = 156 bits (395), Expect = 4e-36, Method: Composition-based stats. Identities = 46/196 (23%), Positives = 80/196 (40%), Gaps = 4/196 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A E + AG + PT+ Y + N A+ R+ +I+ + D+S Sbjct: 13 QRLIEQAVERIRAGDVVVYPTDAAYAIGCQIGNKNAMERIAQIRGLGPKHQYAIMCCDLS 72 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD + L K P T +L S L KT R+P + L Sbjct: 73 DIATYAKVDNATYRLLKANTPAITTFILSATSEVP-RRLMHPKKKTIGLRIPSNPICQAL 131 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ G PL + GQ + + + + + K I + IDGG + S IV++ E Sbjct: 132 LKELGEPLLTSTLILPGQEDPLDDPYDIENQLAKRIDVFIDGGFGTLTTTS-IVDLSGEH 190 Query: 188 KVRILRPGGLEIETLK 203 I+R G ++ + Sbjct: 191 P-EIIRRGVGDVSAFE 205 >gi|325284999|ref|YP_004260789.1| Sua5/YciO/YrdC/YwlC family protein [Cellulophaga lytica DSM 7489] gi|324320453|gb|ADY27918.1| Sua5/YciO/YrdC/YwlC family protein [Cellulophaga lytica DSM 7489] Length = 196 Score = 156 bits (395), Expect = 4e-36, Method: Composition-based stats. Identities = 50/186 (26%), Positives = 87/186 (46%), Gaps = 5/186 (2%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + + K L+ G I PT+TV+G+ D+ N A+ ++Y++KKR +IC V++ M Sbjct: 13 DEINKCITVLENGGVILYPTDTVWGIGCDATNEDAVNKIYQLKKRANTKTMICLVANDFM 72 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGFTKKLI 128 ++KH P P T+V D +I A K+ RV F + LI Sbjct: 73 LEKHVEKVPEVAFDIIDIADKPTTIVYDNPK--NIAKNLIAEDKSLAIRVATDKFCQYLI 130 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICK-EIPLIIDGGISKIGLESTIVNVQCEK 187 + P+ SAN SG + + K I S + + + + I K+ S+I+ + + Sbjct: 131 SKFKKPIVSTSANLSGDPTAKSFKEISSDILKGVDYAVNLQRNIQKV-TPSSIIKLSNDG 189 Query: 188 KVRILR 193 V+++R Sbjct: 190 TVKVIR 195 >gi|260550969|ref|ZP_05825174.1| yrdC domain-containing protein [Acinetobacter sp. RUH2624] gi|260405917|gb|EEW99404.1| yrdC domain-containing protein [Acinetobacter sp. RUH2624] Length = 205 Score = 156 bits (395), Expect = 4e-36, Method: Composition-based stats. Identities = 47/196 (23%), Positives = 80/196 (40%), Gaps = 4/196 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A E + AG + PT+ Y + N A+ R+ +I+ + D+S Sbjct: 13 QRLIDQAVERIRAGDVVVYPTDAAYAIGCQIGNKNAMERIAQIRDLGPKHQYAIMCCDLS 72 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD + L K P T +L S L KT R+P + L Sbjct: 73 DIATYAKVDNATYRLLKANTPAITTFILPATSEVP-RRLMHPKKKTIGLRIPSNPICQAL 131 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ G PL + GQ + + + S + K I + IDGG + S IV++ E Sbjct: 132 LKELGEPLLTSTLILPGQEDPLDDPYDIESQLSKRIDVFIDGGFGTLTTTS-IVDLSGEH 190 Query: 188 KVRILRPGGLEIETLK 203 I+R G ++ + Sbjct: 191 P-EIIRHGAGDVSAFE 205 >gi|332525339|ref|ZP_08401504.1| Sua5/YciO/YrdC/YwlC [Rubrivivax benzoatilyticus JA2] gi|332108613|gb|EGJ09837.1| Sua5/YciO/YrdC/YwlC [Rubrivivax benzoatilyticus JA2] Length = 207 Score = 156 bits (395), Expect = 4e-36, Method: Composition-based stats. Identities = 50/189 (26%), Positives = 82/189 (43%), Gaps = 3/189 (1%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 L++A E L G +A+PT++ Y L + A +L ++ + L D+S Sbjct: 14 PRLLKQAAELLRGGDVLAVPTDSSYALVCRLDDKAAAEQLRRLRGIDDKHLLTLLCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD L KL PGP T +LD +S + +T RVP T+ L Sbjct: 74 ELANYARVDNRQYRLLKLGTPGPYTFILDATKEVP-RRVSHPSRRTIGLRVPDHQVTQDL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + YG PL + G N + + K +P IID G + +T++++ E Sbjct: 133 LAVYGEPLLATTLILPGDDEPLNDVDEIQDRLGKLLPAIIDAGACPM-EPTTVLDMTAED 191 Query: 188 KVRILRPGG 196 V + + G Sbjct: 192 PVLVRQGRG 200 >gi|294638016|ref|ZP_06716276.1| protein RimN [Edwardsiella tarda ATCC 23685] gi|291088808|gb|EFE21369.1| protein RimN [Edwardsiella tarda ATCC 23685] Length = 190 Score = 156 bits (395), Expect = 5e-36, Method: Composition-based stats. Identities = 47/192 (24%), Positives = 77/192 (40%), Gaps = 8/192 (4%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 ++ +++L L IA PTE V+GL D + +A++ L ++K+RP LI Sbjct: 1 MIDKPQNDSLADVLAALRQQRVIAYPTEAVFGLGCDPDSESAVQALLDLKQRPWDKGLIL 60 Query: 63 HVSDISMVKKHASVDPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 +D + + + L +F WPGP+T V+ + D T T RV Sbjct: 61 IAADYQQLLPYVCDEALQGERRTAVFARWPGPVTWVMP--ARDDTPRWLTGRFSTLAVRV 118 Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 ++L YG PL SAN SG + + P ++D + S Sbjct: 119 SAHPMVQQLCRAYGKPLVSTSANLSGLAPCRSASEV-REQFGARFP-VLDAAVGGRQNPS 176 Query: 179 TIVNVQCEKKVR 190 I + + R Sbjct: 177 EIRDALSGELFR 188 >gi|237712469|ref|ZP_04542950.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|237726660|ref|ZP_04557141.1| conserved hypothetical protein [Bacteroides sp. D4] gi|265752175|ref|ZP_06087968.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 3_1_33FAA] gi|229435186|gb|EEO45263.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] gi|229453790|gb|EEO59511.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|263236967|gb|EEZ22437.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 3_1_33FAA] Length = 191 Score = 156 bits (395), Expect = 5e-36, Method: Composition-based stats. Identities = 53/189 (28%), Positives = 93/189 (49%), Gaps = 8/189 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 L+KACE + G I PT+T++G+ D+ NP A++R+Y+IKKR ++ V Sbjct: 7 EDLKKACEVMQKGGVILYPTDTIWGIGCDATNPKAVKRVYDIKKRADSKAMLVLVDSTVK 66 Query: 70 VKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 V + S P ++ L + F PLT++ D ++ A + RV F+K+L Sbjct: 67 VNFYVSDVPAVAWDLIE-FATKPLTIIYD--GARNLAENLLAEDGSVGIRVTAEEFSKQL 123 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQC 185 + + SAN SGQ S N +S + + + I++ ++G S+I+ + Sbjct: 124 CFRFRKAIVSTSANISGQPSPANFSE-ISEEVKQAVDYIVEYRQDEVGHPKPSSIIKLGK 182 Query: 186 EKKVRILRP 194 +V+I+R Sbjct: 183 GGEVKIIRE 191 >gi|257068424|ref|YP_003154679.1| translation factor SUA5 [Brachybacterium faecium DSM 4810] gi|256559242|gb|ACU85089.1| translation factor SUA5 [Brachybacterium faecium DSM 4810] Length = 211 Score = 156 bits (395), Expect = 5e-36, Method: Composition-based stats. Identities = 41/192 (21%), Positives = 76/192 (39%), Gaps = 4/192 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A L+AG IA PT++ Y L N + R+ I++ + +D + Sbjct: 20 PRLIAQAAAVLEAGGLIAYPTDSCYALGCALGNAEGLERIRRIRQVGKDHHFTLVCADFA 79 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + V + L K PGP T +L +S T R+P L Sbjct: 80 QLGQFVLVSNPTFRLVKNATPGPYTFILRATREVP-RKMSHPKKHTVGVRIPDHRVAHAL 138 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G P+A + GQ ++ + +++ IID G +T++++ Sbjct: 139 VEALGEPIASSTLLLPGQEEPPTEGWVVQDLLGEQVDAIIDSGEVGT-EPTTVIDLSSGD 197 Query: 188 KVRILRPGGLEI 199 + I R G ++ Sbjct: 198 -LVIAREGAGDL 208 >gi|313889339|ref|ZP_07822987.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pseudoporcinus SPIN 20026] gi|313122171|gb|EFR45262.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pseudoporcinus SPIN 20026] Length = 197 Score = 156 bits (395), Expect = 5e-36, Method: Composition-based stats. Identities = 52/191 (27%), Positives = 89/191 (46%), Gaps = 6/191 (3%) Query: 18 FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77 ++ G + +PTETVYGL + + A+ ++Y +K+RP + +V+D + ++ Sbjct: 7 IIENGGALILPTETVYGLFAKAMDEQAVNKVYALKQRPREKAMNLNVADYQAILDYSKDQ 66 Query: 78 PLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLA 136 P L L F PGPLT++L + + + T FR+P + PL Sbjct: 67 PAYLKELYDAFLPGPLTIIL--KANDRVPFWINSGKDTVGFRLPKHPVTAQLIRLAGPLI 124 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 PSAN SG S I+ + + D ++ G +STI+++ K +ILR G Sbjct: 125 GPSANLSGSQSGRRYADIIRAFHNQVEGYEDDQFLT--GEDSTIIDLSGSK-AKILRQGS 181 Query: 197 LEIETLKRAIS 207 + ++ IS Sbjct: 182 ISAAHIQAKIS 192 >gi|330469857|ref|YP_004407600.1| sua5/ycio/yrdc/ywlc family protein [Verrucosispora maris AB-18-032] gi|328812828|gb|AEB47000.1| sua5/ycio/yrdc/ywlc family protein [Verrucosispora maris AB-18-032] Length = 214 Score = 156 bits (395), Expect = 5e-36, Method: Composition-based stats. Identities = 46/204 (22%), Positives = 89/204 (43%), Gaps = 7/204 (3%) Query: 5 SITDSN-ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 S+ D + + A E + G + +PT+TVYG+ D+ P A+R L + K P P Sbjct: 7 SMADRDRGIAAAIEAVRNGELVVLPTDTVYGIGADAFTPYAVRALLDAKDAPHS-PPPVL 65 Query: 64 VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 + + S+ + L + FWPG LT+++ ++ + + R+P Sbjct: 66 IGSRHTLDGLVFSLPTAARDLVEAFWPGALTILVQHSAS--LRWDLGDDSGVVAVRMPLH 123 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 + P+A+ SAN+ GQ + + ++ G + + STIV+ Sbjct: 124 PVALEVLRETGPMAVASANKFGQQPALTADEA-RDQLGYSVRAYLEAGPAVDPVPSTIVD 182 Query: 183 VQCEKKVRILRPGGLEIETLKRAI 206 + + V ++R GG+ + L+ + Sbjct: 183 LTGDVPV-LVREGGIGLAKLREVV 205 >gi|167621974|ref|YP_001672268.1| SUA5/yciO/yrdC domain-containing protein [Shewanella halifaxensis HAW-EB4] gi|212288222|sp|B0TLD6|RIMN_SHEHH RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|167351996|gb|ABZ74609.1| SUA5/yciO/yrdC domain [Shewanella halifaxensis HAW-EB4] Length = 187 Score = 156 bits (395), Expect = 5e-36, Method: Composition-based stats. Identities = 49/180 (27%), Positives = 72/180 (40%), Gaps = 7/180 (3%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 E ++ G IA PTE VYGL D N AI RL EIK RP LI D + + Sbjct: 9 VAELVEQGGVIAYPTEAVYGLGCDPDNDDAIERLLEIKLRPWQKGLILVAGDYQQLLPYI 68 Query: 75 SVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 LS WPGP T ++ + + L + + + RV K L Sbjct: 69 DESQLSAEQLAFVHSKWPGPFTFIMPVKPG--LSNLLSGSFDSIAVRVTAHEGVKALCAA 126 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 P+ SAN +GQ + + I ++ G + STI++ + + +R Sbjct: 127 INKPIVSTSANLTGQDPALSGAAV-KQQFEGIIAGLVIGDLGIQASPSTIIDAKSGQVIR 185 >gi|212691027|ref|ZP_03299155.1| hypothetical protein BACDOR_00517 [Bacteroides dorei DSM 17855] gi|212666259|gb|EEB26831.1| hypothetical protein BACDOR_00517 [Bacteroides dorei DSM 17855] Length = 191 Score = 156 bits (395), Expect = 5e-36, Method: Composition-based stats. Identities = 53/189 (28%), Positives = 94/189 (49%), Gaps = 8/189 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 L+KACE + G I PT+T++G+ D+ NP A++R+Y+IKKR ++ V Sbjct: 7 EDLKKACEVMQKGGVILYPTDTIWGIGCDATNPKAVKRVYDIKKRADSKAMLVLVDSTVK 66 Query: 70 VKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 V + S P ++ +L + F PLT++ D ++ A + RV F+K+L Sbjct: 67 VNFYVSDVPAVAWNLIE-FATKPLTIIYD--GARNLAENLLAEDGSVGIRVTAEEFSKQL 123 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQC 185 + + SAN SGQ S N +S + + + I++ ++G S+I+ + Sbjct: 124 CFRFRKAIVSTSANISGQPSPANFSE-ISEEVKQAVDYIVEYRQDEVGHPKPSSIIKLGK 182 Query: 186 EKKVRILRP 194 +V+I+R Sbjct: 183 GGEVKIIRE 191 >gi|218706890|ref|YP_002414409.1| putative ribosome maturation factor [Escherichia coli UMN026] gi|293406880|ref|ZP_06650804.1| ribosome maturation factor [Escherichia coli FVEC1412] gi|300896630|ref|ZP_07115147.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 198-1] gi|301018860|ref|ZP_07183099.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 69-1] gi|218433987|emb|CAR14904.1| putative ribosome maturation factor [Escherichia coli UMN026] gi|291425691|gb|EFE98725.1| ribosome maturation factor [Escherichia coli FVEC1412] gi|300359507|gb|EFJ75377.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 198-1] gi|300399517|gb|EFJ83055.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 69-1] Length = 190 Score = 156 bits (395), Expect = 5e-36, Method: Composition-based stats. Identities = 49/185 (26%), Positives = 75/185 (40%), Gaps = 8/185 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +A+ A + L+ IA PTE V+G+ D + A+ RL E+K+RP LI ++ Sbjct: 8 DAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSEIAVMRLLELKQRPVDKGLILIAANYEQ 67 Query: 70 VKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 +K + L+ + WPGP+T V +TT T + RV Sbjct: 68 LKPYIDDTMLTDAQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVV 125 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 L + YG PL SAN SG V + + P ++ G S I + Sbjct: 126 ALCQAYGKPLVSTSANLSGLPPCRTVDEV-RAQFGAAFP-VVPGETGGRLNPSEIRDALT 183 Query: 186 EKKVR 190 + R Sbjct: 184 GELFR 188 >gi|307822750|ref|ZP_07652981.1| SUA5/yciO/yrdC domain protein [Methylobacter tundripaludum SV96] gi|307736354|gb|EFO07200.1| SUA5/yciO/yrdC domain protein [Methylobacter tundripaludum SV96] Length = 185 Score = 156 bits (395), Expect = 5e-36, Method: Composition-based stats. Identities = 51/188 (27%), Positives = 83/188 (44%), Gaps = 4/188 (2%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 M ++ A L AG IA PTE VYGL D N A+ L EIK+RP LI Sbjct: 1 MPYHSPFKIKNAVRHLKAGAVIAYPTEAVYGLGCDPLNEDAVMTLLEIKQRPIEKGLILI 60 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 S + ++ + +D + WPGP+T V+ + ++ RV Sbjct: 61 ASSLEQLRPYLVLDKTLIDRITPTWPGPVTWVIPAQPW--VPKWLRGEHQSLAVRVTNHP 118 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 + L +G PL SAN + + +I + +L + +I I+ G + ++ E+ I + Sbjct: 119 IARDLCAQFGSPLVSTSANPTTRPAIKESRKLLKTFADADI-FIVHGKVGELAQETAIYD 177 Query: 183 VQCEKKVR 190 K++R Sbjct: 178 AVSGKRLR 185 >gi|194246572|ref|YP_002004211.1| Translation factor [Candidatus Phytoplasma mali] gi|193806929|emb|CAP18361.1| Translation factor [Candidatus Phytoplasma mali] Length = 187 Score = 155 bits (394), Expect = 5e-36, Method: Composition-based stats. Identities = 50/189 (26%), Positives = 79/189 (41%), Gaps = 6/189 (3%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 + G I PT+T+YG+ + I ++Y++KKR PL +D+S V+ ++ Sbjct: 1 MKKGSLIIFPTDTIYGIGAKINDNEGINKIYKLKKRDFSKPLSVLFADLSQVRHLVKINS 60 Query: 79 LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIP 138 S L FWPGPLTL+L S R P + PL Sbjct: 61 TSRKLINYFWPGPLTLILKTTS----FYKKKNKENNLGIRQPKHPLALKLLKKHGPLKTT 116 Query: 139 SANRSGQISITNVKHILSSSICKEIPLIID-GGISKIGLESTIVNVQCEKKVRILRPGGL 197 S N SG N ++ K++ I + L ST++++Q +ILR G + Sbjct: 117 SVNISGFP-PLNNYKVIRQIYEKKVDYIFYSSNQNLSKLSSTVLDLQLNNNFKILREGSI 175 Query: 198 EIETLKRAI 206 E + + I Sbjct: 176 TKEMIYKVI 184 >gi|298207806|ref|YP_003715985.1| hypothetical protein CA2559_06115 [Croceibacter atlanticus HTCC2559] gi|83850444|gb|EAP88312.1| hypothetical protein CA2559_06115 [Croceibacter atlanticus HTCC2559] Length = 186 Score = 155 bits (394), Expect = 5e-36, Method: Composition-based stats. Identities = 48/187 (25%), Positives = 86/187 (45%), Gaps = 5/187 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 L K L G I PT+T++G+ D+ N A+++++E+KKR L+C V D Sbjct: 2 KEELNKCLNVLKKGGLILYPTDTIWGIGCDATNYDAVQKVFELKKRAESKALVCLVHDYK 61 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 M+ ++ P + + P T++ D + ++ RV F L Sbjct: 62 MLNQYIENIPEVAYDILKYAQKPTTIIYD--KAKLVAENVVGEDESLAVRVAKDKFCNDL 119 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK-IGLESTIVNVQCE 186 ++ + PL SAN SG+ S N K +S I K + +++ +K + S I+ + + Sbjct: 120 VKKFKRPLVSTSANISGKPSPKNFKE-ISDEILKGVDYVVNLHQNKNMAKPSAIIKLGSD 178 Query: 187 KKVRILR 193 V++LR Sbjct: 179 GMVKVLR 185 >gi|295134942|ref|YP_003585618.1| YrdC domain-containing protein [Zunongwangia profunda SM-A87] gi|294982957|gb|ADF53422.1| YrdC domain-containing protein [Zunongwangia profunda SM-A87] Length = 189 Score = 155 bits (394), Expect = 6e-36, Method: Composition-based stats. Identities = 45/186 (24%), Positives = 78/186 (41%), Gaps = 3/186 (1%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++ L G I PT+TV+G+ D+ N AI +++ +KKR +IC VSD Sbjct: 5 KTEIQNCLAVLKKGGIILYPTDTVWGIGCDATNADAIDKIFALKKRAESKSMICLVSDFK 64 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 M+ ++ P + + P +++ D + A T RV F K+L Sbjct: 65 MLNEYVEEVPEVAYDILKYAAKPTSIIYD--DPIRVAENIIAEDNTLAIRVTKDPFCKEL 122 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + PL SAN SGQ + + I + ++ K S I+ + + Sbjct: 123 TKRLRRPLVSTSANISGQPTPASFSQISPEILKGVDYVVNLHRSKKSSKPSAIIKLGNDG 182 Query: 188 KVRILR 193 V+++R Sbjct: 183 TVKVIR 188 >gi|26249867|ref|NP_755907.1| putative ribosome maturation factor [Escherichia coli CFT073] gi|26110295|gb|AAN82481.1|AE016767_241 Protein yrdC [Escherichia coli CFT073] gi|307555370|gb|ADN48145.1| Sua5/YciO/YrdC family protein [Escherichia coli ABU 83972] Length = 205 Score = 155 bits (394), Expect = 6e-36, Method: Composition-based stats. Identities = 50/185 (27%), Positives = 76/185 (41%), Gaps = 8/185 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +A+ A + L+ IA PTE V+G+ D + TA+ RL E+K+RP LI ++ Sbjct: 23 DAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKRRPVDKGLILIAANYEQ 82 Query: 70 VKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 +K + L+ + WPGP+T V +TT T + RV Sbjct: 83 LKPYIDDTMLTDAQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVV 140 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 L + YG PL SAN SG V + + P ++ G S I + Sbjct: 141 ALCQAYGKPLVSTSANLSGLPPCRTVDEV-RAQFGAAFP-VVPGETGGRLNPSEIRDALT 198 Query: 186 EKKVR 190 + R Sbjct: 199 GELFR 203 >gi|303232598|ref|ZP_07319284.1| protein-(glutamine-N5) methyltransferase, release factor-specific [Atopobium vaginae PB189-T1-4] gi|302481385|gb|EFL44459.1| protein-(glutamine-N5) methyltransferase, release factor-specific [Atopobium vaginae PB189-T1-4] Length = 546 Score = 155 bits (394), Expect = 6e-36, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 97/206 (47%), Gaps = 6/206 (2%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSR-NPTAIRRLYEIKKRPAMNPLICHVSD 66 D +++AC+ L I +PT++VYG+ + + +RR ++IK R L V+D Sbjct: 344 DPAVVKRACDCLANQGVIIVPTDSVYGIGCAATKDNPGLRRTFDIKHRDYAQTLPWLVAD 403 Query: 67 ISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 S + + V + LA FWPG LTLV+ + A T R+P Sbjct: 404 ASALDTYGIDVPTWAYALAHEFWPGALTLVVKANDKVGV-EYQHAATHTIALRLPNSEVV 462 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + L G PLAI SAN G + + + + E+ L +D G + IG STIV+ Sbjct: 463 RALARGCGCPLAITSANTHGSSAAVS-GDTIEPRLLDEVDLALDAGSAPIGTASTIVDCT 521 Query: 185 CEKKVRILRPGGLEIETLKRAISVEL 210 E+ ++LR G + E + R +S L Sbjct: 522 HEEP-KLLRVGAISPEDIYRVVSSAL 546 >gi|313157954|gb|EFR57360.1| Sua5/YciO/YrdC/YwlC family protein [Alistipes sp. HGB5] Length = 200 Score = 155 bits (394), Expect = 6e-36, Method: Composition-based stats. Identities = 48/194 (24%), Positives = 90/194 (46%), Gaps = 7/194 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 LRK + L+ G I PT++VY R+P AI RL +K + A +++ Sbjct: 12 ERELRKVVDALEDGGIIIYPTDSVYAFGCSLRSPKAIERLRRMKGKDAE-AFTVVFENLA 70 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 ++ VD + H+ K PGP T VL +++ + + +T R+P + + Sbjct: 71 QAAEYCRVDNAAFHILKRNLPGPFTFVLT--ASSGMPDKALEKRRTIGIRIPGNAVPRVI 128 Query: 128 IETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 + G PL S + + T ++ +++ L+IDGG+ + +T+V++ + Sbjct: 129 VAALGCPLITTSVKDDDEVVEYTTDPELIHERYGRDVALVIDGGVGD-NVPTTVVDLTGD 187 Query: 187 KKVRILRPGGLEIE 200 + ILR G E++ Sbjct: 188 EP-EILREGKGELQ 200 >gi|22127897|ref|NP_671320.1| putative ribosome maturation factor [Yersinia pestis KIM 10] gi|21961034|gb|AAM87571.1|AE014004_9 hypothetical protein y4027 [Yersinia pestis KIM 10] Length = 194 Score = 155 bits (394), Expect = 6e-36, Method: Composition-based stats. Identities = 43/184 (23%), Positives = 72/184 (39%), Gaps = 8/184 (4%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 L L IA PTE V+GL D + A+ L +K+RP LI ++ + + Sbjct: 13 VLADIVRALRQEEVIAYPTEAVFGLGCDPDSEKAVNTLLALKQRPWQKGLILVAANYAQL 72 Query: 71 KKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + + + + + WPGP+T V+ + + T + RV ++ Sbjct: 73 EPYINDSMLNEIQRETLFSTWPGPITWVIP--ARVETPQWLTGCFDSLAVRVSNHPLVQQ 130 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L YG PL SAN SG + + +P ++ G + S I + Sbjct: 131 LCAEYGKPLVSTSANLSGHEPCRTEEEV-RIQFGPSLP-VLSGHVGGRLNPSEIRDALTG 188 Query: 187 KKVR 190 K+ R Sbjct: 189 KRFR 192 >gi|186681197|ref|YP_001864393.1| Sua5/YciO/YrdC/YwlC family protein [Nostoc punctiforme PCC 73102] gi|186463649|gb|ACC79450.1| Sua5/YciO/YrdC/YwlC family protein [Nostoc punctiforme PCC 73102] Length = 219 Score = 155 bits (394), Expect = 6e-36, Method: Composition-based stats. Identities = 52/216 (24%), Positives = 89/216 (41%), Gaps = 18/216 (8%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 +I S+ N + + L +G + PT+TVY + D +A+ R+ +IK+ Sbjct: 3 KIFSVHPDNPQIRRIEEIKSALSSGAVMLYPTDTVYAIGCDLNAKSAVERVRQIKQLAND 62 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTAC 116 PL +S V +A V + + K PGP T +L +T + L + K+ Sbjct: 63 KPLTFLCPSLSNVATYAFVSDTAYRIMKRLIPGPYTFLLP--ATKLVPRLVQSPKRKSTG 120 Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQ--------ISITNVKH--ILSSSICKEIPL 165 RVP +L+ G+P+ SA+ I V+ L + K + + Sbjct: 121 IRVPNHTVCLELLAALGNPIISTSAHLPADEADNGMIRIDPETVQSRVELFDRLDKLVDI 180 Query: 166 IIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIET 201 I+D G STI+++ ++ I R G E Sbjct: 181 IVDTGEEPTYEVSTILDMTGDEAAIIRRGLGWEAAA 216 >gi|45440104|ref|NP_991643.1| putative ribosome maturation factor [Yersinia pestis biovar Microtus str. 91001] gi|51597951|ref|YP_072142.1| ribosome maturation factor [Yersinia pseudotuberculosis IP 32953] gi|108809218|ref|YP_653134.1| putative ribosome maturation factor [Yersinia pestis Antiqua] gi|108813983|ref|YP_649750.1| putative ribosome maturation factor [Yersinia pestis Nepal516] gi|145597487|ref|YP_001161562.1| putative ribosome maturation factor [Yersinia pestis Pestoides F] gi|150260706|ref|ZP_01917434.1| hypothetical protein YPE_3022 [Yersinia pestis CA88-4125] gi|153948235|ref|YP_001402826.1| ribosome maturation factor [Yersinia pseudotuberculosis IP 31758] gi|162421283|ref|YP_001605212.1| putative ribosome maturation factor [Yersinia pestis Angola] gi|165927892|ref|ZP_02223724.1| ribosomal modification protein RimN [Yersinia pestis biovar Orientalis str. F1991016] gi|165936405|ref|ZP_02224973.1| ribosomal modification protein RimN [Yersinia pestis biovar Orientalis str. IP275] gi|166010412|ref|ZP_02231310.1| ribosomal modification protein RimN [Yersinia pestis biovar Antiqua str. E1979001] gi|166213341|ref|ZP_02239376.1| ribosomal modification protein RimN [Yersinia pestis biovar Antiqua str. B42003004] gi|167399680|ref|ZP_02305204.1| ribosomal modification protein RimN [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167418979|ref|ZP_02310732.1| ribosomal modification protein RimN [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425696|ref|ZP_02317449.1| ribosomal modification protein RimN [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167468250|ref|ZP_02332954.1| putative ribosome maturation factor [Yersinia pestis FV-1] gi|170022581|ref|YP_001719086.1| putative ribosome maturation factor [Yersinia pseudotuberculosis YPIII] gi|186897147|ref|YP_001874259.1| putative ribosome maturation factor [Yersinia pseudotuberculosis PB1/+] gi|218927452|ref|YP_002345327.1| putative ribosome maturation factor [Yersinia pestis CO92] gi|229836272|ref|ZP_04456439.1| Sua5 YciO YrdC YwlC family protein [Yersinia pestis Pestoides A] gi|229840105|ref|ZP_04460264.1| Sua5 YciO YrdC YwlC family protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842186|ref|ZP_04462341.1| Sua5 YciO YrdC YwlC family protein [Yersinia pestis biovar Orientalis str. India 195] gi|229904514|ref|ZP_04519625.1| Sua5 YciO YrdC YwlC family protein [Yersinia pestis Nepal516] gi|270488268|ref|ZP_06205342.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis KIM D27] gi|294502320|ref|YP_003566382.1| hypothetical protein YPZ3_0210 [Yersinia pestis Z176003] gi|81638257|sp|Q664V8|RIMN_YERPS RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|123245526|sp|Q1C2Y3|RIMN_YERPA RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|123372822|sp|Q1CCY0|RIMN_YERPN RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|123777794|sp|Q74XX5|RIMN_YERPE RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|212288236|sp|A7FNJ8|RIMN_YERP3 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|212288237|sp|B2K500|RIMN_YERPB RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|212288238|sp|A9R933|RIMN_YERPG RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|212288239|sp|A4TH27|RIMN_YERPP RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|212288240|sp|B1JJI2|RIMN_YERPY RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|45434959|gb|AAS60520.1| Putative translation factor (SUA5) [Yersinia pestis biovar Microtus str. 91001] gi|51591233|emb|CAH22899.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP 32953] gi|108777631|gb|ABG20150.1| hypothetical protein YPN_3823 [Yersinia pestis Nepal516] gi|108781131|gb|ABG15189.1| hypothetical protein YPA_3227 [Yersinia pestis Antiqua] gi|115346063|emb|CAL18929.1| conserved hypothetical protein [Yersinia pestis CO92] gi|145209183|gb|ABP38590.1| hypothetical protein YPDSF_0168 [Yersinia pestis Pestoides F] gi|149290114|gb|EDM40191.1| hypothetical protein YPE_3022 [Yersinia pestis CA88-4125] gi|152959730|gb|ABS47191.1| ribosomal modification protein RimN [Yersinia pseudotuberculosis IP 31758] gi|162354098|gb|ABX88046.1| ribosomal modification protein RimN [Yersinia pestis Angola] gi|165915521|gb|EDR34130.1| ribosomal modification protein RimN [Yersinia pestis biovar Orientalis str. IP275] gi|165920168|gb|EDR37469.1| ribosomal modification protein RimN [Yersinia pestis biovar Orientalis str. F1991016] gi|165990502|gb|EDR42803.1| ribosomal modification protein RimN [Yersinia pestis biovar Antiqua str. E1979001] gi|166205639|gb|EDR50119.1| ribosomal modification protein RimN [Yersinia pestis biovar Antiqua str. B42003004] gi|166962973|gb|EDR58994.1| ribosomal modification protein RimN [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167052184|gb|EDR63592.1| ribosomal modification protein RimN [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055386|gb|EDR65180.1| ribosomal modification protein RimN [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169749115|gb|ACA66633.1| SUA5/yciO/yrdC domain [Yersinia pseudotuberculosis YPIII] gi|186700173|gb|ACC90802.1| SUA5/yciO/yrdC domain protein [Yersinia pseudotuberculosis PB1/+] gi|229678632|gb|EEO74737.1| Sua5 YciO YrdC YwlC family protein [Yersinia pestis Nepal516] gi|229690496|gb|EEO82550.1| Sua5 YciO YrdC YwlC family protein [Yersinia pestis biovar Orientalis str. India 195] gi|229696471|gb|EEO86518.1| Sua5 YciO YrdC YwlC family protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706340|gb|EEO92347.1| Sua5 YciO YrdC YwlC family protein [Yersinia pestis Pestoides A] gi|262360400|gb|ACY57121.1| hypothetical protein YPD4_0212 [Yersinia pestis D106004] gi|262364350|gb|ACY60907.1| hypothetical protein YPD8_0217 [Yersinia pestis D182038] gi|270336772|gb|EFA47549.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis KIM D27] gi|294352779|gb|ADE63120.1| hypothetical protein YPZ3_0210 [Yersinia pestis Z176003] gi|320013379|gb|ADV96950.1| Sua5 YciO YrdC YwlC family protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 190 Score = 155 bits (394), Expect = 6e-36, Method: Composition-based stats. Identities = 43/184 (23%), Positives = 72/184 (39%), Gaps = 8/184 (4%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 L L IA PTE V+GL D + A+ L +K+RP LI ++ + + Sbjct: 9 VLADIVRALRQEEVIAYPTEAVFGLGCDPDSEKAVNTLLALKQRPWQKGLILVAANYAQL 68 Query: 71 KKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + + + + + WPGP+T V+ + + T + RV ++ Sbjct: 69 EPYINDSMLNEIQRETLFSTWPGPITWVIP--ARVETPQWLTGCFDSLAVRVSNHPLVQQ 126 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L YG PL SAN SG + + +P ++ G + S I + Sbjct: 127 LCAEYGKPLVSTSANLSGHEPCRTEEEV-RIQFGPSLP-VLSGHVGGRLNPSEIRDALTG 184 Query: 187 KKVR 190 K+ R Sbjct: 185 KRFR 188 >gi|332293598|ref|YP_004432207.1| Sua5/YciO/YrdC/YwlC family protein [Krokinobacter diaphorus 4H-3-7-5] gi|332171684|gb|AEE20939.1| Sua5/YciO/YrdC/YwlC family protein [Krokinobacter diaphorus 4H-3-7-5] Length = 186 Score = 155 bits (394), Expect = 6e-36, Method: Composition-based stats. Identities = 48/183 (26%), Positives = 78/183 (42%), Gaps = 3/183 (1%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 A L G I PT+TV+G+ D+ NP A+ ++Y +KKR LIC VSD M+ + Sbjct: 6 DAALAVLKRGGLILYPTDTVWGIGCDATNPDAVDKVYALKKRAESKSLICLVSDFKMLNQ 65 Query: 73 HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGFTKKLIETY 131 + P + + P T++ D I A + FRV F L++ + Sbjct: 66 YIENIPEVAYDILKYAAKPTTIIYD--DPIRIATNVIAPDNSTAFRVCRNQFCNFLLKKF 123 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 P+ SAN +G+ + + I I ++ S I+ + + KV I Sbjct: 124 RKPIVSTSANITGKPTPQSFSEISQEIIDGVDYVVNLDRDRTSTKPSAIIKLTEDGKVTI 183 Query: 192 LRP 194 +R Sbjct: 184 IRE 186 >gi|313207355|ref|YP_004046532.1| translation factor sua5 [Riemerella anatipestifer DSM 15868] gi|312446671|gb|ADQ83026.1| translation factor SUA5 [Riemerella anatipestifer DSM 15868] gi|315023250|gb|EFT36260.1| Sua5 YciO YrdC YwlC family protein [Riemerella anatipestifer RA-YM] Length = 203 Score = 155 bits (394), Expect = 6e-36, Method: Composition-based stats. Identities = 51/195 (26%), Positives = 82/195 (42%), Gaps = 9/195 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP-LICHVSDI 67 N +++ + LD G I P++TVY L D N A+ +L +KK +D+ Sbjct: 14 ENLIKEVIKTLDNGGLIIYPSDTVYALGCDINNIKAMEKLAALKKIKLEKAHFSIICNDL 73 Query: 68 SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126 S + +D L K PG T +L+ PL+ KT RVP + Sbjct: 74 SHLSSFTKPIDNSVFRLLKSHIPGAFTFILEANKNL---PLAYKGHKTVGIRVPDHPIPQ 130 Query: 127 LI-ETYGHPLAIPSANRSGQIS-ITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 LI E G P+A S +I + +++ + ++ID G + STIV++ Sbjct: 131 LIVEKLGRPIASTSIKDDDEIIEYSTDPELIAEKYDHLVDIVIDSGYGD-NVASTIVDLT 189 Query: 185 CEKKVRILRPGGLEI 199 I+R G E+ Sbjct: 190 S-GVAEIIRQGKGEL 203 >gi|313127651|ref|YP_004037921.1| translation factor sua5 [Halogeometricum borinquense DSM 11551] gi|312294016|gb|ADQ68476.1| translation factor SUA5 [Halogeometricum borinquense DSM 11551] Length = 208 Score = 155 bits (394), Expect = 7e-36, Method: Composition-based stats. Identities = 47/182 (25%), Positives = 82/182 (45%), Gaps = 8/182 (4%) Query: 27 IPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKL 86 PTETVYGL D + A+ R++E+K R PL V D+ +++ + Sbjct: 23 YPTETVYGLGADGTDADAVERVFELKGRSRDKPLSIGVPDVDAAREYTRLTSFDADFMAE 82 Query: 87 FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQ 145 F PGP+T+V++ + + + TA RVP P+ SANRSG Sbjct: 83 FLPGPVTVVVER--GSQLPDVLTAGGDRVGVRVPDHEVALDFFRRADCPVTATSANRSGA 140 Query: 146 ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRA 205 S+T+ L +++ + +ID G + G ST+V+ ++ G + ++ Sbjct: 141 PSVTH-PDQLDATLKDSVGAVIDAGEAPGGTGSTVVDPSRN----VIHRRGAMADAIETW 195 Query: 206 IS 207 ++ Sbjct: 196 LT 197 >gi|330823716|ref|YP_004387019.1| Sua5/YciO/YrdC/YwlC family protein [Alicycliphilus denitrificans K601] gi|329309088|gb|AEB83503.1| Sua5/YciO/YrdC/YwlC family protein [Alicycliphilus denitrificans K601] Length = 211 Score = 155 bits (394), Expect = 7e-36, Method: Composition-based stats. Identities = 49/198 (24%), Positives = 85/198 (42%), Gaps = 6/198 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 L++A L G +A+PT++ Y L + A+ R+ +++ + L D+S Sbjct: 14 PRLLKQAAALLSGGGILAVPTDSSYALVCRLDDKDAVDRIRRVRQINDKHHLTLLCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127 + +A VD L KL PGP T +LD +S KT RVP + L Sbjct: 74 ELASYAHVDNRQYRLLKLATPGPYTFLLDATKEVP-RRVSHPQRKTIGLRVPDRKGLQML 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ--- 184 +E +G PL + +G+ N + K+I IID G + +T++++ Sbjct: 133 LELHGTPLLATTLIPAGEAEPLNDPQEIRERYEKQIDGIIDAGACPL-EPTTVLDLTPMS 191 Query: 185 CEKKVRILRPGGLEIETL 202 ++R G ++ L Sbjct: 192 TGGDPVVVREGRGSLQAL 209 >gi|261338131|ref|ZP_05966015.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium gallicum DSM 20093] gi|270276759|gb|EFA22613.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium gallicum DSM 20093] Length = 211 Score = 155 bits (394), Expect = 7e-36, Method: Composition-based stats. Identities = 58/210 (27%), Positives = 105/210 (50%), Gaps = 7/210 (3%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 QI+ I + +L + + G + +PT+TVYG+A + + AI R++ +K+RPA L Sbjct: 3 QILPI-NEESLTLVADVVSRGGIVVVPTDTVYGVACNPHDEQAIARIFAVKQRPATKSLQ 61 Query: 62 CHVSDISMVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK--TACFR 118 ++D+ + + P L L + F PG + + ++ + L + T R Sbjct: 62 ILMADVQALDELGLALPTPLDRLGERFLPGAFSPIAVMVHDRGLKTLKQTSDGVLTQGVR 121 Query: 119 VPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 VP + I PLA SAN+SGQ S +V+ +++ E+ L +DGG + + S Sbjct: 122 VPDSDACRAILRVTGPLACSSANKSGQQSAHSVQEAVAA-FGDEVDLYVDGGPTVSHVAS 180 Query: 179 TIV--NVQCEKKVRILRPGGLEIETLKRAI 206 T+V + +RI+R G L+ +++ A+ Sbjct: 181 TVVEADPNDADGIRIIREGRLDEASVRAAL 210 >gi|156548558|ref|XP_001605728.1| PREDICTED: similar to conserved hypothetical protein [Nasonia vitripennis] Length = 266 Score = 155 bits (394), Expect = 7e-36, Method: Composition-based stats. Identities = 64/236 (27%), Positives = 102/236 (43%), Gaps = 29/236 (12%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A E L G +A+PT+T+YGLA ++N ++ RLYEIKKR PL + D+ ++ A Sbjct: 35 AAELLRNGKIVAMPTDTIYGLAGLAQNDASVARLYEIKKRDESKPLAICLWDVDDIENWA 94 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGH 133 V+ L L + PGP TLVL S+ ++P ++ R+P F + +++ Sbjct: 95 HVEDLPDGLLQALLPGPTTLVLKRKSS--LNPHLNPGVENVGIRIPKYDFIRSVVKMLNQ 152 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL-------ESTIVNVQCE 186 P+A+ SAN S S + + S+ E+ + +G ST+V++ Sbjct: 153 PIALTSANESNAPSSLHPEE--FQSLWPELDGVF-YEKMNLGTIKESWRRGSTVVDLTVA 209 Query: 187 KKVRILRPGGLEIETL--------------KRAISVELEYCVDETSTPQSPGMLKS 228 + ILR G T K E DE+ P+ M Sbjct: 210 GQFSILRRGIGYQTTFRVLREHQLTYQKNTKNVAGQGEEDSEDESKAPEE--MKAR 263 >gi|217970101|ref|YP_002355335.1| Sua5/YciO/YrdC/YwlC family protein [Thauera sp. MZ1T] gi|217507428|gb|ACK54439.1| Sua5/YciO/YrdC/YwlC family protein [Thauera sp. MZ1T] Length = 207 Score = 155 bits (393), Expect = 7e-36, Method: Composition-based stats. Identities = 42/193 (21%), Positives = 77/193 (39%), Gaps = 4/193 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +R+A E L G +A+PT++ Y LA + + R+ I+ + D+S Sbjct: 14 ARLIRQAAEILRGGGLVALPTDSAYALACQVGDAALLDRIRRIRGVDERHHFTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD L K PGP T +L+ + KT RVP L Sbjct: 74 EIGTYARVDNSQYRLLKAVTPGPYTFILEGTKELP-RRVLHPKRKTIGLRVPEHAVVSAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + PL + G+ + + + K + L+I+ G +T++++ Sbjct: 133 LAEIDGPLLTSTLILPGEDLPLSDPEEIRDRLGKLVELVIEAGYCGP-EATTVIDLTSGA 191 Query: 188 KVRILRPGGLEIE 200 ++R G +E Sbjct: 192 P-ELVRAGRGPLE 203 >gi|298382621|ref|ZP_06992216.1| ribosome maturation factor [Escherichia coli FVEC1302] gi|298276457|gb|EFI17975.1| ribosome maturation factor [Escherichia coli FVEC1302] Length = 205 Score = 155 bits (393), Expect = 7e-36, Method: Composition-based stats. Identities = 49/185 (26%), Positives = 75/185 (40%), Gaps = 8/185 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +A+ A + L+ IA PTE V+G+ D + A+ RL E+K+RP LI ++ Sbjct: 23 DAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSEIAVMRLLELKQRPVDKGLILIAANYEQ 82 Query: 70 VKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 +K + L+ + WPGP+T V +TT T + RV Sbjct: 83 LKPYIDDTMLTDAQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVV 140 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 L + YG PL SAN SG V + + P ++ G S I + Sbjct: 141 ALCQAYGKPLVSTSANLSGLPPCRTVDEV-RAQFGAAFP-VVPGETGGRLNPSEIRDALT 198 Query: 186 EKKVR 190 + R Sbjct: 199 GELFR 203 >gi|329946638|ref|ZP_08294050.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328526449|gb|EGF53462.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 205 Score = 155 bits (393), Expect = 8e-36, Method: Composition-based stats. Identities = 46/195 (23%), Positives = 82/195 (42%), Gaps = 4/195 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + K + L G +A PT++ Y LA N + R+ I++ + +D + Sbjct: 14 ARLVEKVVDTLRDGGLVAYPTDSGYALACAPGNKEGLDRIRAIRQLDGKHNFTFVCADFA 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 V A V + L K PGP T +L L+ T R+P T+ L Sbjct: 74 QVGPLAIVGNNAFRLIKRLTPGPWTFILKGTKDVPRMTLNPKKH-TLGVRIPDHAITQSL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + +G P+ + R GQ + S+ I ++I+G + + G +T+V++ + Sbjct: 133 VAEFGAPILSSTFIRPGQEEPETNGWEVEESLGHLIDVVIEGPVGQ-GEPTTVVDLTDDV 191 Query: 188 KVRILRPGGLEIETL 202 +LR G +I L Sbjct: 192 P-EVLREGAGDISLL 205 >gi|325266594|ref|ZP_08133271.1| Sua5/YciO/YrdC/YwlC family protein [Kingella denitrificans ATCC 33394] gi|324982037|gb|EGC17672.1| Sua5/YciO/YrdC/YwlC family protein [Kingella denitrificans ATCC 33394] Length = 206 Score = 155 bits (393), Expect = 8e-36, Method: Composition-based stats. Identities = 39/188 (20%), Positives = 72/188 (38%), Gaps = 5/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++ + G + +PT+ Y L + TA+ R+ I++ + L +D+S Sbjct: 14 ERLVKQVAGQIKQGKILVLPTDACYVLCCHLGDKTAMERILAIRQIDLKHHLTLLCADLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD L K PG T +L L KT RVP + Sbjct: 74 ELGTYAKVDNSQFRLLKAATPGAYTFILPATKEVPNRTL-HPKRKTIGLRVPDNAIALAV 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + + + + + +IIDGG +T+V++ Sbjct: 133 LRELGEPLLSCTLMLPEDEEPLTDPYEIQDRLDHAVDIIIDGGWCGS-EPTTVVDMTDG- 190 Query: 188 KVRILRPG 195 + ++R G Sbjct: 191 -IELVRQG 197 >gi|119944820|ref|YP_942500.1| Sua5/YciO/YrdC/YwlC family protein [Psychromonas ingrahamii 37] gi|119863424|gb|ABM02901.1| translation factor SUA5 [Psychromonas ingrahamii 37] Length = 206 Score = 155 bits (393), Expect = 8e-36, Method: Composition-based stats. Identities = 41/189 (21%), Positives = 71/189 (37%), Gaps = 4/189 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A E L G I PT++ Y L N + ++ +I+ + D+S + Sbjct: 17 IKQAVEILKKGGVIIYPTDSGYALGCTMDNKHGLDKICQIRDLNKKHNFTLVCRDLSEIA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 +A VD + K PG T + L +T R+P L+ Sbjct: 77 TYARVDNHAFRALKNNTPGAYTFIFKSTKDLP-KRLMNPTKRTIGIRIPNNVIALALLAE 135 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G PL S G S + + ++ LI+ GG +T+++ + V Sbjct: 136 LGEPLMTTSLILPGNTSTEFDPEDIKDKLSNQVDLIMTGGYLGES-PTTVIDFSDDD-VV 193 Query: 191 ILRPGGLEI 199 I R G +I Sbjct: 194 ITRIGAGDI 202 >gi|260804901|ref|XP_002597326.1| hypothetical protein BRAFLDRAFT_203486 [Branchiostoma floridae] gi|229282589|gb|EEN53338.1| hypothetical protein BRAFLDRAFT_203486 [Branchiostoma floridae] Length = 826 Score = 155 bits (393), Expect = 9e-36, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 9/207 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++ LR + LDAG IPT+TVY LA ++P AI+R+Y IK RPA P+ +S + Sbjct: 618 TSGLRTIADLLDAGGVCGIPTDTVYALAASCKHPEAIKRIYHIKSRPAEKPICVCISHLG 677 Query: 69 MVKKHAS-VDPLSLHLAKLFWPGPLTLVLD---LLSTTDIHPLST--ANLKTACFRVPCG 122 ++ PL + +PG ++ V+ L+ + + + C RVP Sbjct: 678 QLEAAQPGFSPLLWDFMRRCYPGGISCVVPKGDWLANLGLGDAVSYIGTSDSICIRVPDS 737 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 + + PL I SAN SG+ T+ +LSS + +I ++ G S + ST+VN Sbjct: 738 TATAHLVSMTGPLGITSANPSGEPDSTHHDMVLSS-LGDKIDGMLCDGPSNELVASTVVN 796 Query: 183 VQ--CEKKVRILRPGGLEIETLKRAIS 207 E + R G E +++ + Sbjct: 797 CMKIDEVGISFFRVGCTPQERVEQLFA 823 >gi|146300267|ref|YP_001194858.1| Sua5/YciO/YrdC/YwlC family protein [Flavobacterium johnsoniae UW101] gi|146154685|gb|ABQ05539.1| translation factor SUA5 [Flavobacterium johnsoniae UW101] Length = 189 Score = 155 bits (393), Expect = 9e-36, Method: Composition-based stats. Identities = 51/192 (26%), Positives = 86/192 (44%), Gaps = 6/192 (3%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 M + + A E + G I PT+TV+G+ D+ NP A+ ++Y++K+R +I Sbjct: 1 MDTINQEIIN-AYEVIKEGGIILYPTDTVWGIGCDATNPEAVAKIYKLKQRAETQSMIVL 59 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCG 122 ++ M+ P P TL+LD ++ + K+ R V Sbjct: 60 MNGEKMMYNVFKNIPEVAWQILDLSEKPTTLILD--DARNVAHNVISADKSLGVRLVKEP 117 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI-GLESTIV 181 F KL+E PL SAN SGQ + + K I I + ++ K+ G STI+ Sbjct: 118 FCYKLMERMKKPLVSTSANISGQPTPMSFKEISPEIING-VDYVVKLNQDKVAGKPSTII 176 Query: 182 NVQCEKKVRILR 193 + + +V+I+R Sbjct: 177 KLTNDSQVKIIR 188 >gi|206889211|ref|YP_002248839.1| Sua5/YciO/YrdC/YwlC family protein [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741149|gb|ACI20206.1| Sua5/YciO/YrdC/YwlC family protein [Thermodesulfovibrio yellowstonii DSM 11347] Length = 199 Score = 155 bits (393), Expect = 9e-36, Method: Composition-based stats. Identities = 57/203 (28%), Positives = 101/203 (49%), Gaps = 11/203 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN-- 58 M+I+ + + + + + L+ I PTET+YG+ V + +R+L+EIKKRP Sbjct: 1 MKIVKAEEIDII-EVLKILENDGIIIYPTETLYGIGVKYDSKKLLRKLFEIKKRPEEKSF 59 Query: 59 PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 PLI ++ + ++ + + ++ + +WPGPLTL+L P R Sbjct: 60 PLIVNLQHLDLITEF--IPSIAKKFIEKYWPGPLTLLLPAKKNL---PKRITKDNKIAVR 114 Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 +P F KLI+ P+ SAN SG + ++ ++ I L+IDGG G+ Sbjct: 115 MPGESFALKLIQLSQFPITATSANISGYPAADCIETVMKYFKDSFIDLLIDGGKLP-GIP 173 Query: 178 STIVNVQCEKKVRILRPGGLEIE 200 STIV+ + +++R G +E++ Sbjct: 174 STIVDATVD-PPQLIRKGAIEVD 195 >gi|88607846|ref|YP_505359.1| Sua5/YciO/YrdC/YwlC family protein [Anaplasma phagocytophilum HZ] gi|88598909|gb|ABD44379.1| Sua5/YciO/YrdC/YwlC family protein [Anaplasma phagocytophilum HZ] Length = 200 Score = 155 bits (393), Expect = 9e-36, Method: Composition-based stats. Identities = 47/197 (23%), Positives = 88/197 (44%), Gaps = 7/197 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + L + PTET+Y LA ++ + A+ +LY+IK+R P + DI VK Sbjct: 2 VEEIVNALRNEEIVCFPTETLYALACNAFSERAVAKLYDIKRRLYDKPFSLMLGDIQQVK 61 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 K +++ L + ++ PGP+T +L L ++ T R+P ++ Sbjct: 62 KFSNMKNTDLRIMEMLSPGPITFILPLHYAQNLPRRFF--KDTLGVRIPDHALACNILSR 119 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 + P+ SAN SG+ + + + + + S G+ ST+ ++ + + Sbjct: 120 FEFPVVATSANLSGERDALKASD-IPEELRMHVSKLWEDDSSVSGMCSTVFDMVSQ---K 175 Query: 191 ILRPGGLEIETLKRAIS 207 ILR G L + AI+ Sbjct: 176 ILRTGMLPSSKILDAIN 192 >gi|237714415|ref|ZP_04544896.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262408246|ref|ZP_06084793.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294643621|ref|ZP_06721424.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides ovatus SD CC 2a] gi|294806130|ref|ZP_06764982.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides xylanisolvens SD CC 1b] gi|229445579|gb|EEO51370.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262353798|gb|EEZ02891.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292641055|gb|EFF59270.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides ovatus SD CC 2a] gi|294446644|gb|EFG15259.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides xylanisolvens SD CC 1b] Length = 187 Score = 155 bits (393), Expect = 9e-36, Method: Composition-based stats. Identities = 48/189 (25%), Positives = 88/189 (46%), Gaps = 8/189 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 ++KAC+ ++ G I PT+TV+G+ D+ N A+RR+YEIKKR ++ V Sbjct: 3 EDIKKACQVMNEGGVILYPTDTVWGIGCDATNEEAVRRVYEIKKRADSKAMLVLVDSPVK 62 Query: 70 VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 V + V ++ L ++ PLT++ ++ P A + RV F+++L Sbjct: 63 VDFYVQDVPDVAWDLIEVA-DKPLTIIYS--GARNLAPNLLAEDGSVGIRVTNEDFSRRL 119 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQC 185 + + + SAN SGQ N +S I + I+ + S+I+ ++ Sbjct: 120 CQQFRKAIVSTSANVSGQPGAANFSE-ISDEIKSAVDYIVGFRQDDMNKPKPSSIIKLEK 178 Query: 186 EKKVRILRP 194 ++I+R Sbjct: 179 GGVIKIIRE 187 >gi|330500990|ref|YP_004377859.1| SUA5/YciO/YrdC domain-containing protein [Pseudomonas mendocina NK-01] gi|328915276|gb|AEB56107.1| SUA5/YciO/YrdC domain-containing protein [Pseudomonas mendocina NK-01] Length = 185 Score = 155 bits (392), Expect = 9e-36, Method: Composition-based stats. Identities = 44/187 (23%), Positives = 72/187 (38%), Gaps = 4/187 (2%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + + +++ + G IA PTE V+GL D N A+ RL +K+RP LI Sbjct: 1 MASNWQIQQTARVVREGGVIAYPTEAVWGLGCDPWNEEAVDRLLALKERPMHKGLIVVAD 60 Query: 66 DISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 DI + P WPGP T ++ + T T RV Sbjct: 61 DIEQFDFLLNDLPDVWQERLAGSWPGPNTWLVPHQ--NRLPEWVTGEHDTVALRVSDHPL 118 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + + Y PL SAN +G+ S + + E+ ++ G + S I +++ Sbjct: 119 VRALCRYTGPLISTSANPAGRPSARSRLRV-EQYFPGELDKVLGGALGGRKNPSLIRDLR 177 Query: 185 CEKKVRI 191 +R Sbjct: 178 TGDVIRP 184 >gi|255535332|ref|YP_003095703.1| Sua5 YciO YrdC YwlC family protein [Flavobacteriaceae bacterium 3519-10] gi|255341528|gb|ACU07641.1| Sua5 YciO YrdC YwlC family protein [Flavobacteriaceae bacterium 3519-10] Length = 205 Score = 155 bits (392), Expect = 9e-36, Method: Composition-based stats. Identities = 51/206 (24%), Positives = 87/206 (42%), Gaps = 13/206 (6%) Query: 2 QIMSITD----SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 +I+ I N + + + L G I P++TVY L + + A+ +L +IKK Sbjct: 5 KILKIYPNNPQENLIDEVVKTLQNGGIIIYPSDTVYALGCNIFDIRAMEKLAQIKKIKLE 64 Query: 58 NP-LICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115 +D+ + +D K PGP T +L+ + PL+ KT Sbjct: 65 KAQFSIICNDLGHLSGFTRPIDTPVFRFLKSKIPGPFTFILEAGKSL---PLAYKGNKTV 121 Query: 116 CFRVPCGFTKKLI-ETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISK 173 RVP +LI E GHP+A S + I + +++ + ++ID G Sbjct: 122 GIRVPDHVIPQLIVEKLGHPIASTSVKDDDEVIEYSTDPELIAEKYDNLVDIVIDSGYGD 181 Query: 174 IGLESTIVNVQCEKKVRILRPGGLEI 199 + STIV++ + I+R G E+ Sbjct: 182 -NVASTIVDLTSGEP-EIVRQGKGEV 205 >gi|298493014|ref|YP_003723191.1| Sua5/YciO/YrdC/YwlC family protein ['Nostoc azollae' 0708] gi|298234932|gb|ADI66068.1| Sua5/YciO/YrdC/YwlC family protein ['Nostoc azollae' 0708] Length = 219 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 49/202 (24%), Positives = 79/202 (39%), Gaps = 14/202 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + L +G + PT+TVY + D +A+ R+ +IK+ PL +S V Sbjct: 17 IEDIKLALSSGAIMLYPTDTVYAIGCDLNAKSAVERVRQIKQLGNDKPLTFLCPSLSNVA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLST-ANLKTACFRVPCG-FTKKLIE 129 +A V ++ + K PG T +L +T + L KT RVP L+E Sbjct: 77 TYAFVSDIAYRIMKRLIPGSYTFLLP--ATKLVPRLVQNPKRKTTGIRVPDHTVCLALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKH----------ILSSSICKEIPLIIDGGISKIGLEST 179 G+P+ SA+ + + L + +IID G ST Sbjct: 135 ALGNPIISTSAHLPPKDIDYEIAELDSENIMSRVELFDRWDNLVDIIIDTGEEPTYHVST 194 Query: 180 IVNVQCEKKVRILRPGGLEIET 201 I+++ E+ V R G E Sbjct: 195 ILDLTDEEPVITRRGLGWEAAA 216 >gi|50084077|ref|YP_045587.1| hypothetical protein ACIAD0865 [Acinetobacter sp. ADP1] gi|49530053|emb|CAG67765.1| conserved hypothetical protein [Acinetobacter sp. ADP1] Length = 211 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 43/196 (21%), Positives = 81/196 (41%), Gaps = 4/196 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A E + AG + PT+ Y + N +A+ R+ +I+ + D+S Sbjct: 19 ARLINQAVERIRAGDVVVYPTDAAYSIGCQIGNKSAMERIAQIRGLGPKHQYAIMCCDLS 78 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD L K P T +L S L KT R+P + L Sbjct: 79 DIATYAKVDNAMYRLLKANTPSITTFILPATSEVP-KRLMHPKKKTIGLRIPTNPICQAL 137 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ G P+ + GQ + + + + + K + + IDGG + S IV++ E Sbjct: 138 LQELGEPILTSTLILPGQSDPLDDPYDIENQLGKRVDVFIDGGFGTLSTTS-IVDLSGEN 196 Query: 188 KVRILRPGGLEIETLK 203 ++R G ++ + Sbjct: 197 P-EVVRHGAGDVSAFE 211 >gi|255612074|ref|XP_002539379.1| Protein yrdC, putative [Ricinus communis] gi|223506727|gb|EEF23004.1| Protein yrdC, putative [Ricinus communis] Length = 188 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 44/188 (23%), Positives = 85/188 (45%), Gaps = 6/188 (3%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + + KA + + G I PT+T++G+ D+ N AI++++++K+R +I + + Sbjct: 4 DEVEKALKVIQDGGIILYPTDTIWGVGCDATNTEAIKKIFKLKQRDEAKSMIILLDTENK 63 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 ++ + P + + PLTLV+ +I P A + RV F ++LI Sbjct: 64 LESYVKEVPAVAYDLIEYAENPLTLVMPGAK--NISPALIAADGSVGIRVSSHQFCQQLI 121 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQCE 186 + P+ SAN SG S N I I + ++D + STI+ ++ + Sbjct: 122 QRLRKPIVSTSANISGSPSPQNFSEIAQEIIDG-VDYVVDLDQHDLSKKKPSTIMRIEPD 180 Query: 187 KKVRILRP 194 + +R Sbjct: 181 GRFEFIRR 188 >gi|226329519|ref|ZP_03805037.1| hypothetical protein PROPEN_03428 [Proteus penneri ATCC 35198] gi|225202705|gb|EEG85059.1| hypothetical protein PROPEN_03428 [Proteus penneri ATCC 35198] Length = 189 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 49/180 (27%), Positives = 70/180 (38%), Gaps = 8/180 (4%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 E L IA PTE V+G+ D + A+ L +K+R LI + +K + Sbjct: 12 IIEALKNNKVIAYPTEAVFGVGCDPDSEQAVMALLMLKQRSIEKGLILIADNYGQLKPYI 71 Query: 75 SVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 L+ WPGP+T V+ STT T + RV K+L Sbjct: 72 DDSALTQTQRDRMFASWPGPVTWVIPAKSTT--PKWLTGKFDSLAVRVTDHSVVKELCLA 129 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 YG PL SAN SG V+ + IP I++G + S I + + R Sbjct: 130 YGKPLVSTSANLSGLPPCRTVEEV-REQFEDTIP-IVEGNVGGRQNPSEIRDALTGELYR 187 >gi|17227697|ref|NP_484245.1| hypothetical protein alr0201 [Nostoc sp. PCC 7120] gi|17135179|dbj|BAB77725.1| alr0201 [Nostoc sp. PCC 7120] Length = 219 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 52/215 (24%), Positives = 91/215 (42%), Gaps = 20/215 (9%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 +I+++ N + + L +G + PT+TVY + D +A+ R+ +IK+ Sbjct: 3 KIIAVHPDNPQSRRIEEIRSALSSGAVMLYPTDTVYAIGCDLNVKSAVERVRQIKQLAND 62 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTAC 116 PL +S V +A V + + K PG T +L +T + L + KT Sbjct: 63 KPLTFLCPSLSNVATYAFVSDTAYRIMKRLIPGTYTFLLP--ATKLVPRLVQSPKRKTTG 120 Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQ-----------ISITNVKHILSSSICKEIP 164 RVP L+E G+P+ SA+ SIT++ L + K + Sbjct: 121 IRVPNHTVCLALLEALGNPIISTSAHIPPDEAGNGKVGIISESITSMVE-LFDRVDKLVD 179 Query: 165 LIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEI 199 +I+D G STIV++ ++ + + G E Sbjct: 180 VIVDTGQEPTYDVSTIVDLTGDEPMITRQGLGWEA 214 >gi|189463821|ref|ZP_03012606.1| hypothetical protein BACINT_00154 [Bacteroides intestinalis DSM 17393] gi|189438771|gb|EDV07756.1| hypothetical protein BACINT_00154 [Bacteroides intestinalis DSM 17393] Length = 187 Score = 154 bits (391), Expect = 1e-35, Method: Composition-based stats. Identities = 44/189 (23%), Positives = 88/189 (46%), Gaps = 8/189 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 ++KAC+ ++ G I PT+T++G+ D+ N A+RR+Y+IK+R ++ V Sbjct: 3 EDIKKACQVMNEGGVILYPTDTIWGIGCDATNEEAVRRVYQIKQRSDSKAMLVLVDSPVK 62 Query: 70 VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 V + V ++ L ++ PLT++ ++ A + RV F+K L Sbjct: 63 VDFYVQDVPEVAWDLIEVA-DKPLTIIYS--GARNLASNLIAEDGSVGIRVTNEEFSKHL 119 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQC 185 + + + SAN SGQ S N ++ + + ++ ++G S+I+ + Sbjct: 120 CQQFRKAIVSTSANISGQPSPANYSE-ITEELKSMVDYVVGYRQEEMGHPKPSSIIKLDK 178 Query: 186 EKKVRILRP 194 ++I+R Sbjct: 179 GGVIKIIRE 187 >gi|15606072|ref|NP_213449.1| hypothetical protein aq_651 [Aquifex aeolicus VF5] gi|2983259|gb|AAC06854.1| hypothetical protein aq_651 [Aquifex aeolicus VF5] Length = 198 Score = 154 bits (391), Expect = 1e-35, Method: Composition-based stats. Identities = 62/204 (30%), Positives = 102/204 (50%), Gaps = 14/204 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 AL++A E L G I PT+T+YG+ D+ N A++RLY+I +RP+ P + + D S Sbjct: 7 KEALKEAVEILKKGGIIVAPTDTLYGILADATNEEAVKRLYKI-RRPSGKPFLVLLPDES 65 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKK 126 ++K V L K+ LTLV T D + T R+P GF + Sbjct: 66 WLEKLCLDVKEEHKKLLKV---EGLTLVF--RKTCDKLDYVSKG--TLAVRLPQKGFIRD 118 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+ P+ PS N G+ +V+ + ++ L ID G+ K G STI+++ Sbjct: 119 LLSELKKPVVAPSVNPEGKKPAESVEEAYN-YFGNKVDLYIDAGVIK-GEPSTILDLTEG 176 Query: 187 KKVRILRPGGLEIETLKRAISVEL 210 V+ILR G ++ E +++ ++ +L Sbjct: 177 --VKILREGKVKKEEIEKILNRKL 198 >gi|242239361|ref|YP_002987542.1| Sua5/YciO/YrdC/YwlC family protein [Dickeya dadantii Ech703] gi|242131418|gb|ACS85720.1| Sua5/YciO/YrdC/YwlC family protein [Dickeya dadantii Ech703] Length = 206 Score = 154 bits (391), Expect = 1e-35, Method: Composition-based stats. Identities = 40/188 (21%), Positives = 74/188 (39%), Gaps = 4/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ + L G I PT++ Y L + TA+ R+ I+ + D+S Sbjct: 14 PRLIGQSVDILRKGGVIVYPTDSGYALGCMLEDKTAMERICRIRNLDQHHNFTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD + L K PG T +L L KT RVP +L Sbjct: 74 ELSSYAYVDNAAFRLIKNNTPGNYTFILKATKEVP-RRLMNDKRKTIGMRVPSNPIALEL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + P+ + G + + + K++ L+I GG +T++++ E Sbjct: 133 LAALNAPMMSTTLMLPGNDFAESDPEEIQEHLGKQVDLVIHGGFLGQ-QPTTVIDLT-EP 190 Query: 188 KVRILRPG 195 +++R G Sbjct: 191 APQVVRDG 198 >gi|302869593|ref|YP_003838230.1| Sua5/YciO/YrdC/YwlC family protein [Micromonospora aurantiaca ATCC 27029] gi|315503945|ref|YP_004082832.1| sua5/ycio/yrdc/ywlc family protein [Micromonospora sp. L5] gi|302572452|gb|ADL48654.1| Sua5/YciO/YrdC/YwlC family protein [Micromonospora aurantiaca ATCC 27029] gi|315410564|gb|ADU08681.1| Sua5/YciO/YrdC/YwlC family protein [Micromonospora sp. L5] Length = 214 Score = 154 bits (391), Expect = 1e-35, Method: Composition-based stats. Identities = 44/199 (22%), Positives = 86/199 (43%), Gaps = 6/199 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + A E + G + +PT+TVYG+ D+ P A++ L + K A + Sbjct: 12 DRGIAAAIEAVKNGELVVLPTDTVYGIGADAFTPYAVKALADTKG-GARQAPPVLIGSRH 70 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 + S+ + L + FWPG LT+V++ + + + T R+P Sbjct: 71 TLDGLVFSLPGAARDLVEAFWPGALTIVVEHSPS--LAWDLGDSSGTVAVRMPLHPVALE 128 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + P+A+ SAN+ GQ + + + + ++ G + + STIV++ + Sbjct: 129 VLRETGPMAVASANKIGQPAALTAEEA-RDQLGYGVRAYLEAGPAVDPVPSTIVDLTGDV 187 Query: 188 KVRILRPGGLEIETLKRAI 206 R+LR G + + L+ + Sbjct: 188 P-RVLREGAVTLAKLREVV 205 >gi|163857789|ref|YP_001632087.1| putative translation factor [Bordetella petrii DSM 12804] gi|163261517|emb|CAP43819.1| putative translation factor [Bordetella petrii] Length = 207 Score = 154 bits (391), Expect = 1e-35, Method: Composition-based stats. Identities = 44/189 (23%), Positives = 79/189 (41%), Gaps = 3/189 (1%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 L++A ++L+ G +A+PT++ Y +A + A L ++ + L D++ Sbjct: 14 PRLLKQAAQWLNDGGLVAVPTDSSYAVAAHLDDKAAADALRRLRGLDERHHLTLLCRDLA 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + A VD L K PGP T +L+ +S + KT RVP T L Sbjct: 74 EIGHFARVDNRQYRLLKAATPGPWTFILEATREVP-RRVSHPSRKTIGIRVPQHAVTLAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL + G+ N + ++ IID G +T++++ ++ Sbjct: 133 LEQVGAPLLSTTLIPKGEDDALNDAEDIRDRYAHDLAAIIDAGACPQS-PTTVIDLTGDE 191 Query: 188 KVRILRPGG 196 + R G Sbjct: 192 PAVLRRGRG 200 >gi|62751448|ref|NP_001015837.1| yrdC domain containing [Xenopus (Silurana) tropicalis] gi|58476879|gb|AAH90125.1| yrdC domain containing [Xenopus (Silurana) tropicalis] Length = 238 Score = 154 bits (391), Expect = 1e-35, Method: Composition-based stats. Identities = 52/186 (27%), Positives = 90/186 (48%), Gaps = 12/186 (6%) Query: 18 FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77 L G IA+PT+T+YG+A ++N +I +Y +K R PL V ++ + ++ V Sbjct: 39 ILQQGGVIAVPTDTIYGIACLAQNSQSISNIYNVKGRNGTKPLAICVGNVDDIYRYCQVR 98 Query: 78 PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136 + L + PGP+TLV++ + ++ R+P F ++L E PLA Sbjct: 99 -VPDQLLRDLLPGPVTLVMER--SDRLNKELNPFTSLVGVRIPDHAFIRQLAEVCSEPLA 155 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGI------SKIGLESTIVNVQCEKKVR 190 + SAN S Q S V+ + ++ L++DGG + L ST+V++ K Sbjct: 156 LTSANISSQDSTLTVEE--FRDLWPKLSLVVDGGPIGELSSPECRLGSTVVDLSVPGKFT 213 Query: 191 ILRPGG 196 ++R G Sbjct: 214 VIRDGC 219 >gi|319764020|ref|YP_004127957.1| sua5/ycio/yrdc/ywlc family protein [Alicycliphilus denitrificans BC] gi|317118581|gb|ADV01070.1| Sua5/YciO/YrdC/YwlC family protein [Alicycliphilus denitrificans BC] Length = 211 Score = 154 bits (391), Expect = 1e-35, Method: Composition-based stats. Identities = 49/198 (24%), Positives = 85/198 (42%), Gaps = 6/198 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 L++A L G +A+PT++ Y L + A+ R+ +++ + L D+S Sbjct: 14 PRLLKQAAALLSGGGILAVPTDSSYALVCRLDDRDAVDRIRRVRQINDKHHLTLLCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127 + +A VD L KL PGP T +LD +S KT RVP + L Sbjct: 74 ELASYAHVDNRQYRLLKLATPGPYTFLLDATKEVP-RRVSHPQRKTIGLRVPDRKGLQML 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ--- 184 +E +G PL + +G+ N + K+I IID G + +T++++ Sbjct: 133 LELHGTPLLATTLIPAGETEPLNDPQEIRERYEKQIDGIIDAGACPL-EPTTVLDLTPMS 191 Query: 185 CEKKVRILRPGGLEIETL 202 ++R G ++ L Sbjct: 192 TGDDPVVVREGRGSLQAL 209 >gi|255326263|ref|ZP_05367349.1| translation factor SUA5 [Rothia mucilaginosa ATCC 25296] gi|255296717|gb|EET76048.1| translation factor SUA5 [Rothia mucilaginosa ATCC 25296] Length = 395 Score = 154 bits (391), Expect = 1e-35, Method: Composition-based stats. Identities = 58/232 (25%), Positives = 102/232 (43%), Gaps = 25/232 (10%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 A+ A E L A I +PT+TVYG+A D+ + + +L K R P + D++ Sbjct: 16 EAIEAAREALKAHDTIVMPTDTVYGIAADAFSHQGVAKLLADKGRDRTMPPPVLIFDLAA 75 Query: 70 VKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + P L FWPG LT++L + + T RVP F KL Sbjct: 76 LAGVVDDVPDDIYDLGGRFWPGALTMILHAYPS--LSWDLGETRGTVAVRVPDDEFALKL 133 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG---------ISKIGL-- 176 + +G PLA+ SAN++GQ + + + + S+ +++ ++IDGG ++ G+ Sbjct: 134 LTEHG-PLAVSSANKTGQEAALDAQTAM-DSLGEDVAVVIDGGARPKPLESEPNEDGVVV 191 Query: 177 -------ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQ 221 STI++ ++R G + +E L+ + L + + Sbjct: 192 VTERDPAPSTILDCTS-FPYVVVREGAISVEELREVVPTILTRAEADEQAAR 242 >gi|85057289|ref|YP_456205.1| translation factor SUA5 protein [Aster yellows witches'-broom phytoplasma AYWB] gi|84789394|gb|ABC65126.1| translation factor SUA5 protein [Aster yellows witches'-broom phytoplasma AYWB] Length = 196 Score = 154 bits (391), Expect = 1e-35, Method: Composition-based stats. Identities = 55/183 (30%), Positives = 78/183 (42%), Gaps = 6/183 (3%) Query: 24 PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHL 83 I PT+TVYG+ + + +Y+IKKRP ++ S + KK P +L L Sbjct: 6 IIIFPTDTVYGMGAKLYDKKGLNYIYQIKKRPLNKSIVVLCSSLQQAKKLVQFSPQNLKL 65 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRS 143 A FWPGPLT VL S S KT R+P I PL S N+S Sbjct: 66 ALHFWPGPLTFVLPTTSK----YFSKTKEKTLGVRIPNHPLTLEILKKNGPLKTTSVNQS 121 Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203 N + + ++ LI + + STIV++ + V ILR G + E + Sbjct: 122 NHP-PLNDYQTIFNIYHNKVALIYKNYHPILKISSTIVDLTTFQPV-ILRQGTITQEEIS 179 Query: 204 RAI 206 I Sbjct: 180 SQI 182 >gi|148652264|ref|YP_001279357.1| Sua5/YciO/YrdC/YwlC family protein [Psychrobacter sp. PRwf-1] gi|148571348|gb|ABQ93407.1| translation factor SUA5 [Psychrobacter sp. PRwf-1] Length = 206 Score = 154 bits (391), Expect = 1e-35, Method: Composition-based stats. Identities = 47/209 (22%), Positives = 82/209 (39%), Gaps = 8/209 (3%) Query: 1 MQIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56 MQ + I N + + + L+ I PT+T Y + AI +L I++ Sbjct: 1 MQTLYIHPENPQPRLISQTVDALNRDQLIVYPTDTSYAFGCKIGSKEAIEKLRLIRQLDD 60 Query: 57 MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 + D+S + +A+VD L K P P+T +LD LS KT Sbjct: 61 KHQFTLLCRDLSEIATYATVDNQQFKLLKASTPAPITFILDATKDVP-KKLSHPKKKTIG 119 Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 RVP + L+E G P+ S + + + I ++I+ G+ Sbjct: 120 IRVPSNPIAQMLLEAMGEPILTSSLILLSTPLALDDPFDIEDKLGNNIDVMINAGVLTTK 179 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKR 204 L +TIV++ +++R G + + Sbjct: 180 L-TTIVDMTV-FPPQLVRQGAGDASQILE 206 >gi|258652314|ref|YP_003201470.1| Sua5/YciO/YrdC/YwlC family protein [Nakamurella multipartita DSM 44233] gi|258555539|gb|ACV78481.1| Sua5/YciO/YrdC/YwlC family protein [Nakamurella multipartita DSM 44233] Length = 216 Score = 154 bits (391), Expect = 1e-35, Method: Composition-based stats. Identities = 57/212 (26%), Positives = 96/212 (45%), Gaps = 9/212 (4%) Query: 1 MQIMSITDS----NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56 M +D L A +G + +PT+TVYG+ D+ N A+R L K R Sbjct: 1 MTTFDCSDPIERRAGLEAAAHAATSGHLVVLPTDTVYGIGADAFNAAAVRALLAAKGRGP 60 Query: 57 MNPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115 P+ V + + +V P++ L + FWPG L+LV++ + T Sbjct: 61 DMPVPVLVGSWTTIDGLVMAVPPVARTLVEAFWPGGLSLVVEHAPSLQW--DLGDAKGTV 118 Query: 116 CFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R+P + P+A+ SANRSG + + +++ + +DGG S IG Sbjct: 119 MLRMPLHPVAIDLLRLVGPMAVSSANRSGNP-PATTAADAQAQLGEQVSVYLDGGPSPIG 177 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAIS 207 + ST+V+V E R+LR G + ++ L+ + Sbjct: 178 VASTVVDVTGEIP-RVLRVGAVPLDRLRDVVG 208 >gi|262375678|ref|ZP_06068910.1| yrdC domain-containing protein [Acinetobacter lwoffii SH145] gi|262309281|gb|EEY90412.1| yrdC domain-containing protein [Acinetobacter lwoffii SH145] Length = 205 Score = 154 bits (391), Expect = 1e-35, Method: Composition-based stats. Identities = 42/196 (21%), Positives = 79/196 (40%), Gaps = 4/196 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A E + AG + PT+ Y + N +A+ R+ +I+ + D+S Sbjct: 13 PRLISQAVERIRAGDVVVYPTDAAYAIGCQIGNKSAMERIAQIRGLGPKHQYAILCCDLS 72 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD L K P T +L S L KT R+P + L Sbjct: 73 DIATYAKVDNAMYRLLKNNTPAITTFILPATSEVP-RRLMHPKKKTIGLRIPNNPVCQML 131 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ G PL + GQ + + + + K I + +D G+ + S IV++ + Sbjct: 132 LKELGEPLLTSTLILPGQTDPLDDPYDIEMQLGKRIDVFVDSGLGTLSTTS-IVDLSGDH 190 Query: 188 KVRILRPGGLEIETLK 203 ++R G ++ + Sbjct: 191 P-EVMRRGMGDVSAFE 205 >gi|259909962|ref|YP_002650318.1| Putative DNA topoisomerase, fragment [Erwinia pyrifoliae Ep1/96] gi|224965584|emb|CAX57116.1| Putative DNA topoisomerase, fragment [Erwinia pyrifoliae Ep1/96] Length = 181 Score = 154 bits (391), Expect = 1e-35, Method: Composition-based stats. Identities = 53/183 (28%), Positives = 79/183 (43%), Gaps = 8/183 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + E L IA PTE V+GL D + A+ RL +K+RP LI +D + Sbjct: 1 MAQCVEQLAQSQVIAYPTEAVFGLGCDPDSEEAVMRLLVLKQRPVKKGLILIAADYQQLI 60 Query: 72 KHASVDPL-SLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127 + + L + A++F WPGP+T VL STT T T RV L Sbjct: 61 PWIADEQLSAEQKARMFSRWPGPVTWVLPARSTT--PGWLTGQFTTLAVRVSDHPDVIAL 118 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +G PL SAN +G +V +L + + P ++ G S I +V + Sbjct: 119 CHAFGKPLVSTSANLTGLPPCRHVAEVL-AQFGPDFP-VLKGETGGRLNPSEIRDVLTGE 176 Query: 188 KVR 190 +R Sbjct: 177 LIR 179 >gi|262373289|ref|ZP_06066568.1| conserved hypothetical protein [Acinetobacter junii SH205] gi|262313314|gb|EEY94399.1| conserved hypothetical protein [Acinetobacter junii SH205] Length = 205 Score = 154 bits (391), Expect = 2e-35, Method: Composition-based stats. Identities = 47/208 (22%), Positives = 82/208 (39%), Gaps = 8/208 (3%) Query: 1 MQIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56 M + I N + +A + + AG + PT+ Y + N A+ R+ +I+ Sbjct: 1 MLHLHIHPENPQARLITQAVDRIRAGDVVVYPTDAAYAIGCQIGNKNAMERIAQIRGLGP 60 Query: 57 MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 + D+S + +A VD L K P T +L S L KT Sbjct: 61 KHQYAIMCCDLSDIATYAKVDNAMYRLLKNNTPAVTTFILPATSEVP-KRLMHPKKKTIG 119 Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R+P + L++ G PL + Q + + + + + K I + IDGG + Sbjct: 120 LRIPSNPIAQALLKELGEPLLTSTLILPDQTEPLDDPYDIENQLGKRIDVFIDGGFGTLS 179 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLK 203 S IV++ E I+R G ++ + Sbjct: 180 TTS-IVDLSGENP-EIVRRGVGDVSAFE 205 >gi|325068851|ref|ZP_08127524.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces oris K20] Length = 205 Score = 154 bits (391), Expect = 2e-35, Method: Composition-based stats. Identities = 46/195 (23%), Positives = 81/195 (41%), Gaps = 4/195 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + K + L G +A PT++ Y LA N + R+ I++ + +D Sbjct: 14 ARLVEKVVDTLRDGGLVAYPTDSGYALACAPGNKEGLDRIRTIRQLDGKHNFTFVCADFG 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 V A V + L K PGP T +L L+ T R+P T+ L Sbjct: 74 QVGPLAIVGNNAFRLIKRLTPGPWTFILKGTKDVPRMTLNPKKH-TLGVRIPDHAITQSL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + +G P+ + R GQ + S+ I ++I+G + + G +T+V++ + Sbjct: 133 VAEFGAPILSSTFIRPGQEEPETNGWEIQDSLGHLIDVVIEGPVGQ-GEPTTVVDLTDDV 191 Query: 188 KVRILRPGGLEIETL 202 +LR G +I L Sbjct: 192 P-EVLREGAGDISLL 205 >gi|15668233|ref|NP_247026.1| hypothetical protein MJ_0062 [Methanocaldococcus jannaschii DSM 2661] gi|2500922|sp|Q60369|Y062_METJA RecName: Full=Uncharacterized protein MJ0062 gi|1498824|gb|AAB98044.1| hypothetical protein MJ_0062 [Methanocaldococcus jannaschii DSM 2661] Length = 207 Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 61/210 (29%), Positives = 99/210 (47%), Gaps = 14/210 (6%) Query: 2 QIMSIT--DSNALRKACEFLD----AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP 55 +I+ I + +K EFL G + T+T+YG++ ++ N A+R++Y IK+R Sbjct: 6 KIIKIYELNEEERKKVLEFLKKEILNGKIVICGTDTLYGISANALNEKAVRKVYNIKRRE 65 Query: 56 AMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115 PL V D + ++K+A V+ L+ + F PGPLT++L I + Sbjct: 66 FNKPLSICVRDKNEIEKYAYVNDLAKKIIDKFLPGPLTIILKKKPG--IPDIV--AKDYI 121 Query: 116 CFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R+P + E PL SAN SG+ S T V I + K++ +ID G K Sbjct: 122 GIRIPDEPIIR--ELSIVPLTTTSANISGKESPTTVDEIDKEVL-KKVDYVIDIGKCKYS 178 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRA 205 ST + + K+ +R G + I+ L R Sbjct: 179 KPST-IIKIEDDKIISIREGVIPIQKLARC 207 >gi|330806735|ref|YP_004351197.1| hypothetical protein PSEBR_a71 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327374843|gb|AEA66193.1| Conserved hypothetical protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 185 Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 48/187 (25%), Positives = 73/187 (39%), Gaps = 4/187 (2%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + +S +++A + AG IA PTE V+GL D N A+ RL IK R LI Sbjct: 1 MVNSWRVQQAAREIRAGAVIAYPTEAVWGLGCDPWNEEAVERLLAIKSRLPDKGLILVAD 60 Query: 66 DISMVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 +I P + WPGP T ++ + T T RV T Sbjct: 61 NIHQFDFLFEDFPDTWMDRMASTWPGPNTWLVPHQ--NLLPEWITGVHDTVALRVSDHPT 118 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + + + PL SAN G+ + + +I L++ G + S I ++ Sbjct: 119 VRDLCSLVGPLVSTSANPQGRPAARTRIRV-EQYFRGQIDLVLGGNLGGRKNPSVIRDLA 177 Query: 185 CEKKVRI 191 K VR Sbjct: 178 TGKVVRP 184 >gi|331654875|ref|ZP_08355874.1| protein YrdC [Escherichia coli M718] gi|331046890|gb|EGI18968.1| protein YrdC [Escherichia coli M718] Length = 205 Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 49/185 (26%), Positives = 74/185 (40%), Gaps = 8/185 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +A+ A + L+ IA PTE V+G+ D + TA+ RL E+K+RP LI ++ Sbjct: 23 DAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQ 82 Query: 70 VKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 +K + + WPGP+T V +TT T + RV Sbjct: 83 LKPYIDDTMLTDVQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVV 140 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 L + YG PL SAN SG V + + P ++ G S I + Sbjct: 141 ALCQAYGKPLVSTSANLSGLAPCRTVDEV-RAQFGAAFP-VVPGETGGRLNPSEIRDALT 198 Query: 186 EKKVR 190 + R Sbjct: 199 GELFR 203 >gi|253574245|ref|ZP_04851587.1| Sua5/YciO/YrdC/YwlC family protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251846722|gb|EES74728.1| Sua5/YciO/YrdC/YwlC family protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 174 Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 45/111 (40%), Positives = 63/111 (56%), Gaps = 3/111 (2%) Query: 21 AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPL 79 +G +A PTETVYGL D+RN A+ ++ K RP+ NPLI H++D+S + V+ Sbjct: 65 SGGTVAFPTETVYGLGADARNTAAVEAIFAAKGRPSDNPLIVHIADVSQLDGLVTEVNET 124 Query: 80 SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + L + FWPGPLTLVL + + P TA L T R+P +LI Sbjct: 125 ARRLMEAFWPGPLTLVLPVSEGA-VSPRVTAGLSTVGVRMPAHDVALRLIA 174 >gi|308233417|ref|ZP_07664154.1| protein-(glutamine-N5) methyltransferase, release factor-specific [Atopobium vaginae DSM 15829] gi|328944391|ref|ZP_08241853.1| protein-(glutamine-N5) methyltransferase [Atopobium vaginae DSM 15829] gi|327490975|gb|EGF22752.1| protein-(glutamine-N5) methyltransferase [Atopobium vaginae DSM 15829] Length = 526 Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 60/203 (29%), Positives = 94/203 (46%), Gaps = 6/203 (2%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSR-NPTAIRRLYEIKKRPAMNPLICHVSD 66 D + KA + L I PT++VYG+ + + A +R +EIK R L + D Sbjct: 324 DPQIIDKAVDVLAHEGVIITPTDSVYGIGCVALPHNAAHKRTFEIKHRDLRQTLPWLIGD 383 Query: 67 ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124 S + ++A V + LA FWPG LTLV+ A+ KT R+P Sbjct: 384 ESDLMRYAVDVPAWAQKLAHTFWPGALTLVVKACDDVP-QEYVHADNKTIALRLPDSNVV 442 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + L PLAI SAN G + + L + E+ L++D G + + + STIV+ Sbjct: 443 RALARKLSCPLAITSANTHGADAAISGAT-LEDRLIDEVDLVLDAGSAPLAVASTIVDCT 501 Query: 185 CEKKVRILRPGGLEIETLKRAIS 207 + +ILR G ++ + A+S Sbjct: 502 -QSTPKILRIGAIDPHDIMEALS 523 >gi|313667824|ref|YP_004048108.1| hypothetical protein NLA_4790 [Neisseria lactamica ST-640] gi|313005286|emb|CBN86719.1| conserved hypothetical protein [Neisseria lactamica 020-06] Length = 234 Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 40/189 (21%), Positives = 77/189 (40%), Gaps = 5/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +R+ E ++ G + PT++ Y L + A+ R+ I+K + L +D+S Sbjct: 42 ERLIRQVVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLS 101 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A++D + K PGP T +L L KT R+P + L Sbjct: 102 ELGTYAAIDNVQFRQLKAATPGPYTFILQATKDVPARTL-HPKRKTIGLRIPGNAVAQAL 160 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL + + + + + L+IDGG +T++++ Sbjct: 161 LEELGEPLLSCTLMLPEDGEPLTDPYEIRERLEHAVDLVIDGGWCGTD-PATVIDMTDGT 219 Query: 188 KVRILRPGG 196 ++ +R G Sbjct: 220 EL--VRRGC 226 >gi|56459134|ref|YP_154415.1| Sua5 family translation factor [Idiomarina loihiensis L2TR] gi|81362897|sp|Q5QXJ5|RIMN_IDILO RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|56178144|gb|AAV80866.1| Possible translation factor, Sua5/YciO/YrdC/YwlC family [Idiomarina loihiensis L2TR] Length = 186 Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 51/185 (27%), Positives = 75/185 (40%), Gaps = 12/185 (6%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 A + G IA PTE V+GL D RN A+++L +K+RPA LI +D S + Sbjct: 6 EAAHSAIKTG-IIAYPTEAVFGLGCDPRNEVAVQKLLSLKQRPAEKGLILIAADYSQLLP 64 Query: 73 HASVDPLSLHLAKLF-----WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + ++ K F WPGP+TL+L + + L T T RV + Sbjct: 65 YVEDSAIAQD--KRFSVLSHWPGPVTLILPVRK--GVSTLLTGGRDTIAVRVTAHEPARA 120 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L GH L SAN +GQ + + I+D + I+N Sbjct: 121 LCRELGHALVSTSANLTGQEPARTAAEV-RQQFGDSVDWIMDESTGGAANPTRIINPLNN 179 Query: 187 KKVRI 191 + R Sbjct: 180 QVFRD 184 >gi|53803488|ref|YP_114629.1| Sua5/YciO/YrdC/YwlC family protein [Methylococcus capsulatus str. Bath] gi|53757249|gb|AAU91540.1| Sua5/YciO/YrdC/YwlC family protein [Methylococcus capsulatus str. Bath] Length = 207 Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 74/189 (39%), Gaps = 3/189 (1%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +R+A E + G I PT++ Y A+ R+ I++ + D+S Sbjct: 14 QRLIRQAAEIVRQGGVIVYPTDSSYAFGCQLDRKDALHRIRTIRQLDEEHNFTLICHDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 V A ++ + L K PGP T +L+ L KT R+P ++ L Sbjct: 74 QVSAFARINNEAFRLIKTLTPGPYTFLLEATREVP-RRLQHPKRKTIGIRLPDNAVSQML 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + G+ + + + LI+ G+ E+TIV++ E Sbjct: 133 VAELGEPLFSSTLILPGETEGLADPEDIRERVGTRVELILAAGVIPFA-ETTIVDLTGEF 191 Query: 188 KVRILRPGG 196 V + + G Sbjct: 192 PVIVRQGKG 200 >gi|78049489|ref|YP_365664.1| Sua5/YciO/YrdC family protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325925733|ref|ZP_08187108.1| translation factor SUA5 [Xanthomonas perforans 91-118] gi|123584024|sp|Q3BNJ9|RIMN_XANC5 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|78037919|emb|CAJ25664.1| Sua5/YciO/YrdC family protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325543861|gb|EGD15269.1| translation factor SUA5 [Xanthomonas perforans 91-118] Length = 187 Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 51/190 (26%), Positives = 81/190 (42%), Gaps = 7/190 (3%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 +TD+ L +A L G IA PTE V+GL D R A+ RL EIK+RP +I S Sbjct: 1 MTDTLDLDRAVATLTQGGVIAYPTEAVWGLGCDPRQEAAVLRLLEIKRRPVEKGVIVVAS 60 Query: 66 DISMVKKHASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 + +++ +D P WPGP T +L + T T R+ Sbjct: 61 SVDLLRDWVDIDALEPARRQDVLASWPGPHTWILPV--TARAPRWVTGEHDGLAVRISAH 118 Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 L +G PL SAN +G+ + + L ++ I ++DG + + I Sbjct: 119 PVVAALCAAWGAPLVSTSANLAGEPPARS-RAALDPALLATIDGVVDGETGALAQPTQIR 177 Query: 182 NVQCEKKVRI 191 + + + +R Sbjct: 178 DARSGQILRD 187 >gi|329295658|ref|ZP_08252994.1| SUA5/yciO/yrdC domain-containing protein [Plautia stali symbiont] Length = 191 Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 45/186 (24%), Positives = 74/186 (39%), Gaps = 8/186 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +L E L IA PTE V+GL D + +A+ L +K+RP LI +D + Sbjct: 8 PGSLDFCIEQLQQQQVIAYPTEAVFGLGCDPDSESAVMALLALKQRPVEKGLILIAADYA 67 Query: 69 MVKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-T 124 ++ + + L+ WPGP+T V+ T P T + RV Sbjct: 68 QLEPYIADRELTVLQRERMFASWPGPVTYVVPASPHT--PPWLTGRFDSLAIRVSDNPQV 125 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + L +G PL SAN +GQ + + + + P ++ S I + Sbjct: 126 QALCRGFGKPLVSTSANLTGQPPCRSAAEV-AEQFGSQFP-VLQAATGGRLNPSEIRDAI 183 Query: 185 CEKKVR 190 + +R Sbjct: 184 SGELIR 189 >gi|283458330|ref|YP_003362951.1| putative translation factor [Rothia mucilaginosa DY-18] gi|283134366|dbj|BAI65131.1| putative translation factor [Rothia mucilaginosa DY-18] Length = 424 Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 57/232 (24%), Positives = 101/232 (43%), Gaps = 25/232 (10%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 A+ A E L A I +PT+TVYG+A D+ + + +L K R P + D++ Sbjct: 45 EAIEAAREALKAHDTIVMPTDTVYGIAADAFSHQGVAKLLADKGRDRTMPPPVLIFDLAA 104 Query: 70 VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + V L FWPG LT++L + + T RVP F KL Sbjct: 105 LAGVVDDVPNDIYDLGGRFWPGALTMILHAYPS--LSWDLGETRGTVAVRVPDDEFALKL 162 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG---------ISKIGL-- 176 + +G PLA+ SAN++G + + + + S+ +++ ++IDGG ++ G+ Sbjct: 163 LTEHG-PLAVSSANKTGHEAALDAQTAM-DSLGEDVAVVIDGGARPKPLESEPNEDGVVV 220 Query: 177 -------ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQ 221 STI++ ++R G + +E L+ + L + + Sbjct: 221 VTERDPAPSTILDCTS-FPYVVVREGAISVEELREVVPTILTRAEADEQAAR 271 >gi|37528509|ref|NP_931854.1| putative ribosome maturation factor [Photorhabdus luminescens subsp. laumondii TTO1] gi|81418038|sp|Q7MYI5|RIMN_PHOLL RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|36787947|emb|CAE17064.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 189 Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 49/191 (25%), Positives = 71/191 (37%), Gaps = 8/191 (4%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 MS S A L A IA PTE V+GL D + A+ L +KKRP LI Sbjct: 1 MSNEASPAFESVLTALKAEKVIAYPTEAVFGLGCDPDSEKAVNELLILKKRPWQKGLILI 60 Query: 64 VSDISMVKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 + ++ + WPGP+T V+ + T T RV Sbjct: 61 ADNYEQLQPYLDDKLLTEEQKKAMFACWPGPVTWVIP--AKFSAPKWLTGQFATLAVRVS 118 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 K+L YG PL SAN +G + + ++P I++G + S Sbjct: 119 DHPLVKQLCTFYGKPLVSTSANLNGLEPCRTAEEV-RQQFGDKLP-ILNGDVGGRKNPSE 176 Query: 180 IVNVQCEKKVR 190 I + + R Sbjct: 177 IRDALTGELYR 187 >gi|241557718|ref|XP_002400036.1| YrdC domain-containing protein [Ixodes scapularis] gi|215499737|gb|EEC09231.1| YrdC domain-containing protein [Ixodes scapularis] Length = 208 Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 49/190 (25%), Positives = 89/190 (46%), Gaps = 10/190 (5%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 + A + L G +A+PT+T+YG+A ++N ++ +LY +K+R A P+ V + + + Sbjct: 1 QAAADILRNGGIVALPTDTIYGVAALAQNSESVEKLYRLKRRDAGKPIAICVHNADEISR 60 Query: 73 HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETY 131 A V + L +PG +T V T +++P RVP F +++ Sbjct: 61 WAQVS-IPEKLLHHLFPGAVTAVFQR--TRELNPKLNPLTPLVGVRVPNSDFIRQVTRCC 117 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG----LESTIVNVQCEK 187 G PLA+ SAN S ++S +++ ++ + + DGG ST++N Sbjct: 118 GEPLALTSANVSSEMSTLSIQE--FQALWPHLDAVFDGGNLGYNGLNREGSTVINFSIPG 175 Query: 188 KVRILRPGGL 197 I+R G Sbjct: 176 HFEIIRKGWW 185 >gi|298480264|ref|ZP_06998462.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. D22] gi|298273545|gb|EFI15108.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. D22] Length = 187 Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 48/189 (25%), Positives = 88/189 (46%), Gaps = 8/189 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 ++KAC+ ++ G I PT+TV+G+ D+ N A+RR+YEIKKR ++ V Sbjct: 3 EDIKKACQVMNEGGVILYPTDTVWGIGCDATNEEAVRRVYEIKKRADSKAMLVLVDSPVK 62 Query: 70 VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 V + V ++ L ++ PLT++ ++ P A + RV F+++L Sbjct: 63 VDFYVQDVPDVAWDLIEVA-DKPLTIIYS--GARNLAPNLLAEDGSVGIRVTNEDFSRRL 119 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQC 185 + + + SAN SGQ N +S I + I+ + S+I+ ++ Sbjct: 120 CQQFRKAIVSTSANVSGQSGAANFSE-ISDEIKSAVDYIVGFRQDDMNKPKPSSIIKLEK 178 Query: 186 EKKVRILRP 194 ++I+R Sbjct: 179 GGVIKIIRE 187 >gi|332701317|ref|ZP_08421405.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio africanus str. Walvis Bay] gi|332551466|gb|EGJ48510.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio africanus str. Walvis Bay] Length = 206 Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 50/198 (25%), Positives = 83/198 (41%), Gaps = 4/198 (2%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + A E + G + PTET+YGL + P A R+ +K RP PL V Sbjct: 2 TSFHAAIEAIKRGGVVIYPTETLYGLGGSAFLPEAAARVCRLKGRPEGKPLPLVVGSREQ 61 Query: 70 VKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127 V ++ LA LFWPGPL++++ + D+ P R L Sbjct: 62 VGLVTELEDSDFARLADLFWPGPLSIIVP--ARRDLAPQVKDAEGLTSLRWTAHATAAAL 119 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 G PL SAN SG+ + + + + + + +++ G ST+V + Sbjct: 120 CLESGAPLIATSANLSGRPAAARPEDLDPALLAEVDAAVLEHPWPSGGAASTVVRLLGCC 179 Query: 188 KVRILRPGGLEIETLKRA 205 ++ +LR G + L++A Sbjct: 180 RLEVLRIGAVPARVLEQA 197 >gi|290580479|ref|YP_003484871.1| hypothetical protein SmuNN2025_0953 [Streptococcus mutans NN2025] gi|254997378|dbj|BAH87979.1| hypothetical protein [Streptococcus mutans NN2025] Length = 196 Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 61/198 (30%), Positives = 94/198 (47%), Gaps = 8/198 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + K E L G + +PTETVYGL + + A+ +Y +KKRP + +V+ + + Sbjct: 1 MDKIEEALREGQAVVLPTETVYGLFAQALSKRAVDNVYALKKRPREKAMNLNVASLEDIL 60 Query: 72 KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIE 129 + P L L K F PGPLT+VL + + L T FRVP T I+ Sbjct: 61 AFSKEAPAYLAELYKAFLPGPLTIVL--KANEKVPAWINGGLSTVGFRVPAHPQTLAYIK 118 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL PSAN SGQ S + + + + I D + G +STI+++ + Sbjct: 119 QTG-PLIGPSANLSGQASGLVYRE-IQEAFANRLLGIQDD-KAIKGRDSTILDISSS-RA 174 Query: 190 RILRPGGLEIETLKRAIS 207 +ILR G L + ++ + Sbjct: 175 KILRQGALTQDAIQAHVK 192 >gi|291515798|emb|CBK65008.1| translation factor SUA5 [Alistipes shahii WAL 8301] Length = 200 Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 48/194 (24%), Positives = 85/194 (43%), Gaps = 7/194 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 L++ + L+ I PT++VY R+P AI RL I+ + +I+ Sbjct: 12 EKELQRVVDALERDEIIIYPTDSVYAFGCSLRSPKAIERLRRIRGKSEEK-FTVVFENIA 70 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 V ++ VD + K PGP T VL ++ I + +T R+P + + Sbjct: 71 QVAEYCRVDNAVFRILKRNLPGPFTFVL--AASARIPDKALERRRTIGVRIPASPVARAV 128 Query: 128 IETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 + G P+ S Q + T ++ +E+ L+IDGGI + +T+V++ + Sbjct: 129 VGALGCPMITTSVKDDDQVVEYTTDPELIHERYGREVALVIDGGIGD-NVPTTVVDLTGD 187 Query: 187 KKVRILRPGGLEIE 200 ILR G E++ Sbjct: 188 GP-EILREGKGELQ 200 >gi|149023911|gb|EDL80408.1| ischemia/reperfusion inducible protein [Rattus norvegicus] Length = 263 Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 58/195 (29%), Positives = 96/195 (49%), Gaps = 12/195 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ALR A L AG +A+PT+T+YGLA + A+ +Y +K R PL + ++ Sbjct: 51 TEALRAAVAELRAGAVVAVPTDTLYGLACSASCSAALSCVYRLKGRSEAKPLAVCLGRVA 110 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 V ++ V + L + +PGP+TLV++ + +++ R+P F L Sbjct: 111 DVYRYCQVR-VPRELLEDLFPGPVTLVMER--SEELNKDLNPFTPLVGIRIPDHAFMLDL 167 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI------SKIGLESTIV 181 + +G PLA+ SAN S Q S +V+ + + L+IDGG + L ST+V Sbjct: 168 AQMFGGPLALTSANLSSQASSLSVEE--FQDLWPHLSLVIDGGPIGDSESPECRLGSTVV 225 Query: 182 NVQCEKKVRILRPGG 196 ++ K I+R G Sbjct: 226 DLSVPGKFGIIRSGC 240 >gi|147903663|ref|NP_001082498.1| yrdC domain containing [Xenopus laevis] gi|49118602|gb|AAH73618.1| LOC398509 protein [Xenopus laevis] Length = 236 Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 51/186 (27%), Positives = 90/186 (48%), Gaps = 12/186 (6%) Query: 18 FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77 L G I +PT+T+YG+A ++N +I +Y +K R PL V ++ + ++ V+ Sbjct: 37 ILQQGGVIGVPTDTIYGIACLAQNSQSISNIYNVKGRNGTKPLAICVGNVEDIYRYCRVN 96 Query: 78 PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136 + L + PGP+TLV++ + ++ R+P F ++L E PLA Sbjct: 97 -VPDQLLRDLLPGPVTLVMER--SDRLNKELNPFTSLVGVRIPDHAFIRQLAEVCSEPLA 153 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGI------SKIGLESTIVNVQCEKKVR 190 + SAN S Q S V+ + ++ L++DGG + L ST+V++ K Sbjct: 154 LTSANISSQESTLTVEE--FRDLWPKLSLVVDGGPIGEHSSPECRLGSTVVDLSVPGKFT 211 Query: 191 ILRPGG 196 ++R G Sbjct: 212 VIRDGC 217 >gi|317494303|ref|ZP_07952717.1| yrdC domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917553|gb|EFV38898.1| yrdC domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 189 Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 44/191 (23%), Positives = 71/191 (37%), Gaps = 8/191 (4%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 M ++L L +A PTE V+GL D + A+ L ++K+R LI Sbjct: 1 MKKEQESSLANVLNALKNEKVVAYPTEAVFGLGCDPDSELAVHALLDLKQRQWEKGLILI 60 Query: 64 VSDISMVKKHASVDPLSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 ++ ++ + LS + +WPGP+T V+ TT T RV Sbjct: 61 AANYEQLQPYVDDAKLSGERREEVFSYWPGPVTWVMPAKPTTPQ--WLRGRFSTIAVRVS 118 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + L +G PL SAN SG + + P ++D + S Sbjct: 119 DHPLVQTLCLQFGKPLVSTSANLSGLEPCRTAQEV-RLQFGNAFP-VVDAEVGGRLNPSE 176 Query: 180 IVNVQCEKKVR 190 I + + R Sbjct: 177 IRDALTGELFR 187 >gi|22537233|ref|NP_688084.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus agalactiae 2603V/R] gi|22534100|gb|AAM99956.1|AE014241_7 Sua5/YciO/YrdC/YwlC family protein [Streptococcus agalactiae 2603V/R] Length = 183 Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 53/181 (29%), Positives = 90/181 (49%), Gaps = 6/181 (3%) Query: 27 IPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL-HLAK 85 +PTETVYG+ + + A+ +YE+KKRP + ++ D + K++ P L L Sbjct: 1 MPTETVYGIFAKALSEEAVNHVYELKKRPRDKAMNLNICDFETILKYSKNQPTYLKQLYD 60 Query: 86 LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQ 145 F PGPLT++L+ ++ ++ + L + FR+P + PL PSAN SG Sbjct: 61 AFLPGPLTIILE--ASQEVPHWINSGLLSVGFRMPKHPVTLDMIANHGPLIGPSANISGC 118 Query: 146 ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRA 205 S + ++ I D + G++STI+++ + +V+ILR G + E L Sbjct: 119 DSGRVFSE-IQKQFNHQVLGIEDD-KALTGVDSTIIDLSGD-RVKILRQGAITQEVLTAT 175 Query: 206 I 206 I Sbjct: 176 I 176 >gi|82778580|ref|YP_404929.1| putative ribosome maturation factor [Shigella dysenteriae Sd197] gi|123561454|sp|Q32B67|RIMN_SHIDS RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|81242728|gb|ABB63438.1| conserved hypothetical protein [Shigella dysenteriae Sd197] Length = 190 Score = 154 bits (389), Expect = 3e-35, Method: Composition-based stats. Identities = 50/185 (27%), Positives = 75/185 (40%), Gaps = 8/185 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +A+ A + L+ IA PTE V+G+ D + TA+ RL E+K RP LI ++ Sbjct: 8 DAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKLRPVDKGLILIAANYEQ 67 Query: 70 VKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 +K + L+ + WPGP+T V +TT T + RV Sbjct: 68 LKPYIDDTMLTDAQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVV 125 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 L + YG PL SAN SG V + + P ++ G S I + Sbjct: 126 ALCQAYGKPLVSTSANLSGLPPCRTVDEV-RAQFGAAFP-VVPGETGGRLNPSEIRDALT 183 Query: 186 EKKVR 190 + R Sbjct: 184 GELFR 188 >gi|24379520|ref|NP_721475.1| hypothetical protein SMU.1083c [Streptococcus mutans UA159] gi|24377461|gb|AAN58781.1|AE014946_6 conserved hypothetical protein [Streptococcus mutans UA159] Length = 196 Score = 154 bits (389), Expect = 3e-35, Method: Composition-based stats. Identities = 61/198 (30%), Positives = 95/198 (47%), Gaps = 8/198 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + K E L G + +PTETVYGL + + A+ +Y++KKRP + +V+ + + Sbjct: 1 MDKIEEALREGQAVVLPTETVYGLFAQALSKRAVDNVYDLKKRPREKAMNLNVASLEDIL 60 Query: 72 KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIE 129 + P L L K F PGPLT+VL + + L T FRVP T I+ Sbjct: 61 AFSKEAPAYLAELYKAFLPGPLTIVL--KANEKVPAWINGGLSTVGFRVPAHPQTLAYIK 118 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL PSAN SGQ S + + + + I D + G +STI+++ + Sbjct: 119 QTG-PLIGPSANLSGQASGLVYRE-IQEAFANRLLGIQDD-KAIKGRDSTILDISSS-RA 174 Query: 190 RILRPGGLEIETLKRAIS 207 +ILR G L + ++ + Sbjct: 175 KILRQGALTQDAIQAHVK 192 >gi|119509689|ref|ZP_01628835.1| hypothetical protein N9414_21841 [Nodularia spumigena CCY9414] gi|119465708|gb|EAW46599.1| hypothetical protein N9414_21841 [Nodularia spumigena CCY9414] Length = 216 Score = 153 bits (388), Expect = 3e-35, Method: Composition-based stats. Identities = 45/199 (22%), Positives = 78/199 (39%), Gaps = 11/199 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + L +G + PT+TVY + D +A+ R+ +IK+ PL +S V Sbjct: 17 IEEIKSALSSGAVMLYPTDTVYAIGCDLNAKSAVERVRQIKQLANDKPLTFLCPSLSNVA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKKLIE 129 +A V + + K PG T +L +T + L + KT RVP L+ Sbjct: 77 TYAFVSDTAYRIMKRLIPGSYTFLLP--ATKLVPRLVQSPKRKTTGIRVPDHPVCLALLA 134 Query: 130 TYGHPLAIPSANRSGQI-------SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 +P+ SA+ + L + + +IID G STI++ Sbjct: 135 ALENPIISTSAHLPPDDEPVELDLEPRLSRVELFDRLDNLVDVIIDTGEETTYEVSTILD 194 Query: 183 VQCEKKVRILRPGGLEIET 201 + ++ + R G E Sbjct: 195 LTGDEPMITRRGLGWEAAA 213 >gi|120602852|ref|YP_967252.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio vulgaris DP4] gi|120563081|gb|ABM28825.1| translation factor SUA5 [Desulfovibrio vulgaris DP4] Length = 223 Score = 153 bits (388), Expect = 3e-35, Method: Composition-based stats. Identities = 52/193 (26%), Positives = 82/193 (42%), Gaps = 4/193 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + A L G + PTET +G+ D R+ A+ ++ K+R + L + D S + Sbjct: 22 IADAVRLLAGGGVLVYPTETFFGIGCDVRDARAVDAVFRAKRRQSGMALPVILGDASQLG 81 Query: 72 KHASVD-PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGFTKKLIE 129 + LA+ FWPGPL+++ L ++ T RV P L Sbjct: 82 MVTRGHGAVEAALARDFWPGPLSILCPALP--ELPDTLTGGTGRVAVRVSPHPAAMALAL 139 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PLA SAN SG+ ++ V + + + GL ST+V+V + + Sbjct: 140 GLGAPLAASSANVSGRAAVVRVADLDRELLSGVDGVYDAPPQPAGGLPSTLVDVLTDGTL 199 Query: 190 RILRPGGLEIETL 202 RILR G + L Sbjct: 200 RILREGAVPRAAL 212 >gi|92114981|ref|YP_574909.1| SUA5/yciO/yrdC-like protein [Chromohalobacter salexigens DSM 3043] gi|122419275|sp|Q1QTJ8|RIMN_CHRSD RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|91798071|gb|ABE60210.1| translation factor SUA5 [Chromohalobacter salexigens DSM 3043] Length = 185 Score = 153 bits (388), Expect = 3e-35, Method: Composition-based stats. Identities = 48/184 (26%), Positives = 80/184 (43%), Gaps = 6/184 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++ + A L G +A PTE V+GL D + A+ RL +K+R LI D+ Sbjct: 5 ADRIADAVAALRRGALLAYPTEAVWGLGCDPDDDAALARLIALKQRDPAKGLILIAGDMD 64 Query: 69 MVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 ++ A +D L WPGP T ++ PL + RV ++ Sbjct: 65 QLEPWLAGLDALQRARLAESWPGPNTWLVP--DNGRARPLLRGEHTSLAVRVSDHPLVRQ 122 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L +G PL SANR+G+ + + ++ E ++DG + STI ++Q Sbjct: 123 LCAAFGGPLVSSSANRAGEPPAMSAADVRAAF--GEAVTLLDGALGGYARPSTIRDLQSG 180 Query: 187 KKVR 190 + +R Sbjct: 181 ETLR 184 >gi|156399845|ref|XP_001638711.1| predicted protein [Nematostella vectensis] gi|156225834|gb|EDO46648.1| predicted protein [Nematostella vectensis] Length = 224 Score = 153 bits (388), Expect = 3e-35, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 100/206 (48%), Gaps = 10/206 (4%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 + + A L G IA+PT+T+YG+A +++ A+++LYEIK R P+ Sbjct: 10 EFADTQQEELIHAAVASLKLGHVIALPTDTIYGIAALTQSCNAVQKLYEIKGRHQEKPVA 69 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120 V +I VK+ V +S + PGP+TLV + T +++P R+P Sbjct: 70 IAVGNIEDVKRWGKVT-VSDDILTDLLPGPVTLVFER--TPELNPSLNPGTTLIGIRIPN 126 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI----SKIGL 176 F +KL + P+A+ SAN+S +S V+ S+ + L++DGG + Sbjct: 127 HHFVRKLAKACAEPIALTSANQSSAMSSLKVEE--FKSLWPHLDLVVDGGPVGDSPECRQ 184 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETL 202 ST++N+ + I+R G +TL Sbjct: 185 GSTVINLSVPGQFSIIREGSAYQQTL 210 >gi|284923289|emb|CBG36383.1| conserved hypothetical protein [Escherichia coli 042] Length = 190 Score = 153 bits (388), Expect = 3e-35, Method: Composition-based stats. Identities = 48/185 (25%), Positives = 75/185 (40%), Gaps = 8/185 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +A+ A + L+ IA PTE V+G+ D + TA+ L E+K+RP LI ++ Sbjct: 8 DAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMLLLELKQRPVDKGLILIAANYEQ 67 Query: 70 VKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 ++ + L+ + WPGP+T V +TT T + RV Sbjct: 68 LRPYIDDTMLTDAQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVV 125 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 L + YG PL SAN SG V + + P ++ G S I + Sbjct: 126 ALCQAYGKPLVSTSANLSGLPPCRTVDEV-RAQFGAAFP-VVPGETGGRLNPSEIRDALT 183 Query: 186 EKKVR 190 + R Sbjct: 184 GELFR 188 >gi|325280221|ref|YP_004252763.1| Sua5/YciO/YrdC/YwlC family protein [Odoribacter splanchnicus DSM 20712] gi|324312030|gb|ADY32583.1| Sua5/YciO/YrdC/YwlC family protein [Odoribacter splanchnicus DSM 20712] Length = 190 Score = 153 bits (388), Expect = 3e-35, Method: Composition-based stats. Identities = 51/188 (27%), Positives = 87/188 (46%), Gaps = 7/188 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +RK L G I PT+T++GL D+ NP A++R+Y+IKKR ++ + D Sbjct: 6 KEEIRKTLGILKNGGVILYPTDTIWGLGCDATNPEAVKRIYDIKKRADNKSMLVLLDDAG 65 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A V ++L L ++ P T++ + P A T R+ FT+ L Sbjct: 66 KIASYADVPDIALDLIEVA-DKPTTIIYPGAK--RLAPNLIAEDGTIGIRITREEFTRSL 122 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--GLESTIVNVQC 185 I Y P+ SAN SG+ S +S I + I+D + S+I+ + Sbjct: 123 IFRYNKPIVSTSANISGEPSPHFFGE-ISEEIKNAVDYIVDYRRNDHKPAAPSSIIKLGM 181 Query: 186 EKKVRILR 193 +++I+R Sbjct: 182 GGEIQIIR 189 >gi|304415190|ref|ZP_07395904.1| putative ribosome maturation factor [Candidatus Regiella insecticola LSR1] gi|304282960|gb|EFL91409.1| putative ribosome maturation factor [Candidatus Regiella insecticola LSR1] Length = 189 Score = 153 bits (388), Expect = 3e-35, Method: Composition-based stats. Identities = 48/191 (25%), Positives = 75/191 (39%), Gaps = 8/191 (4%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 MS + L K L IA PTE+V+GL D + A+ L +K+R LI Sbjct: 1 MSQNEPAQLEKVLLALQHEEVIAYPTESVFGLGCDPNSEKAVNALLTLKQRSRQKGLILV 60 Query: 64 VSDISMVKKHASVDPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 ++ ++ + LS A +F WPG +T V+ + D T + RV Sbjct: 61 AANYDQLQPYLDDSQLSMAQRASVFSSWPGAITWVIP--AKRDTPDWLTGRFNSLAVRVS 118 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 ++L YG PL SAN SG + + ++ G + S Sbjct: 119 AHPLVRQLCTCYGKPLVSTSANLSGHPPCRTEADVKMQF--GILLPVLTGQVGGCKNPSE 176 Query: 180 IVNVQCEKKVR 190 I + K++R Sbjct: 177 IRDALTGKQLR 187 >gi|255021578|ref|ZP_05293621.1| hypothetical protein ACA_2491 [Acidithiobacillus caldus ATCC 51756] gi|254968966|gb|EET26485.1| hypothetical protein ACA_2491 [Acidithiobacillus caldus ATCC 51756] Length = 211 Score = 153 bits (388), Expect = 3e-35, Method: Composition-based stats. Identities = 42/201 (20%), Positives = 84/201 (41%), Gaps = 4/201 (1%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S + +A + L G + PT++ Y L A RL I++ + L +D+S Sbjct: 14 SRLIAQAGDALRRGALLIYPTDSCYALGCCLWAKDAQDRLRHIRQLDIQHDLSLLFADLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 + ++ +D L + PGP T++L L+ ++ R+P + L Sbjct: 74 QLSEYLKLDDRVYRLLRGLLPGPYTVILPATHDVP-RRLADGKRRSIGARIPDSAICRAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + + G + ++ + + K + I+ GG + ST+V+ Sbjct: 133 LTELGEPLMSSTLHLPGDDLPLHDPEVICARMEKRVDGILLGGEGST-VCSTVVDCTVW- 190 Query: 188 KVRILRPGGLEIETLKRAISV 208 ++LR G + L+ A+ + Sbjct: 191 PPQVLREGLGDGGALRAALGL 211 >gi|162447073|ref|YP_001620205.1| dsRNA binding, YrdC domain-containing protein [Acholeplasma laidlawii PG-8A] gi|161985180|gb|ABX80829.1| dsRNA binding, YrdC domain protein [Acholeplasma laidlawii PG-8A] Length = 182 Score = 153 bits (388), Expect = 3e-35, Method: Composition-based stats. Identities = 46/185 (24%), Positives = 82/185 (44%), Gaps = 8/185 (4%) Query: 23 LPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH 82 + PT+TVYGL + ++++YEIK R P+ +S++ VK+ A +L Sbjct: 3 KLLIFPTDTVYGLGTPYLDKEGLKQIYEIKGRDFNKPIAILISNLEQVKEIAKASDNALK 62 Query: 83 LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSAN 141 +A FWPG LTL+ + + KT R+P KLI+ G PL S N Sbjct: 63 VASKFWPGGLTLIFESSD----AYYQQSGEKTIGLRMPNHKLALKLIDELG-PLKTTSVN 117 Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIET 201 S Q N + ++ + S + ST+++ + ++R G + ++ Sbjct: 118 YSNQP-PLNDYDAIMKVFGDKVDKVYPNEESLSEVSSTVIDFTHDLP-SLIRQGDITLDE 175 Query: 202 LKRAI 206 + + + Sbjct: 176 IMKVL 180 >gi|72163602|ref|XP_793502.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] gi|115954038|ref|XP_001190640.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] Length = 222 Score = 153 bits (388), Expect = 3e-35, Method: Composition-based stats. Identities = 56/198 (28%), Positives = 103/198 (52%), Gaps = 10/198 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 + A L +G I++PT+T+YGLA +++ A+ +LYE+K R P+ ++ I + Sbjct: 17 VVALAANSLMSGNVISVPTDTIYGLAALAQSAEAVEKLYEVKGRNGNKPIAICINCIEDI 76 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIE 129 + V +S + + PGP+T++ S +++P + + R+P F ++L Sbjct: 77 HRWGYVT-VSDDILRDLLPGPVTVLFRRRS--ELNPEFNPSSELIGLRIPEYPFIQQLAA 133 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI----SKIGLESTIVNVQC 185 G P+A+ SAN S Q S +VK + +I L+ DGG+ + ST+V++ Sbjct: 134 AVGEPIALTSANPSAQRSTLSVKE--FEDLWSKIDLVFDGGVLSDSEESRQGSTVVDLSV 191 Query: 186 EKKVRILRPGGLEIETLK 203 + I+RPG + +T+K Sbjct: 192 MGRFSIIRPGSAQEKTVK 209 >gi|317049802|ref|YP_004117450.1| SUA5/yciO/yrdC domain-containing protein [Pantoea sp. At-9b] gi|316951419|gb|ADU70894.1| SUA5/yciO/yrdC domain protein [Pantoea sp. At-9b] Length = 191 Score = 153 bits (388), Expect = 3e-35, Method: Composition-based stats. Identities = 47/186 (25%), Positives = 72/186 (38%), Gaps = 8/186 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +L E L IA PTE V+GL D + A+ L +K+RP LI +D + Sbjct: 8 PGSLDFCIEQLQQQAVIAYPTEAVFGLGCDPDSEHAVMSLLALKQRPVEKGLILIAADYA 67 Query: 69 MVKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-T 124 ++ + + LS WPGP+T V+ T T + RV Sbjct: 68 QLEPYVADQELSVVQRERMFASWPGPVTYVVPASPHT--PRWLTGRFDSLAIRVSDHPDV 125 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + L +G PL SAN SG+ + + P ++ G S I +V Sbjct: 126 QALCRRFGKPLVSTSANLSGEPPCRTAAEV-AQQFGVAFP-VLVGATGGRLNPSEIRDVI 183 Query: 185 CEKKVR 190 + +R Sbjct: 184 SGELIR 189 >gi|281424255|ref|ZP_06255168.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella oris F0302] gi|281401524|gb|EFB32355.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella oris F0302] Length = 189 Score = 153 bits (388), Expect = 3e-35, Method: Composition-based stats. Identities = 47/192 (24%), Positives = 87/192 (45%), Gaps = 8/192 (4%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 +T +R A E + G I PT+TV+G+ D+ N A+ ++Y IKKR LIC V Sbjct: 1 MTREEDIRNAVECMRKGGVILYPTDTVWGIGCDATNKEAVAKVYAIKKRDDSKALICLVD 60 Query: 66 DISMVKK-HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GF 123 + +++ +V ++ L P T++LD ++ A + R+ F Sbjct: 61 SDARLQRCFRNVPNVAWELLDAAI-KPTTVILD--DAVNVAENLVAEDGSLAMRITSEPF 117 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--GLESTIV 181 +K+L + P+ SAN SG+ + N + +S I + + + S+I+ Sbjct: 118 SKELCYRFQKPVVSTSANVSGEPAAANYED-ISEEILNAVDYVCWSRRQEHKPHTPSSII 176 Query: 182 NVQCEKKVRILR 193 + +V ++R Sbjct: 177 KLGRNGEVTVIR 188 >gi|317503445|ref|ZP_07961483.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella salivae DSM 15606] gi|315665433|gb|EFV05062.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella salivae DSM 15606] Length = 189 Score = 153 bits (388), Expect = 3e-35, Method: Composition-based stats. Identities = 47/191 (24%), Positives = 86/191 (45%), Gaps = 6/191 (3%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 +T +R A E + G I PT+TV+G+ D+ N A+ ++Y IKKR LIC V Sbjct: 1 MTKEEDIRNAVECMRKGGVILYPTDTVWGIGCDATNKEAVAKVYAIKKRDDSKALICLVD 60 Query: 66 DISMVKK-HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GF 123 + +++ +V ++ L P T++LD ++ A + R+ F Sbjct: 61 SDARLQRCFRNVPAVAWELLDAA-VKPTTVILD--DAVNVAENLVAEDGSLAVRITNEPF 117 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS-KIGLESTIVN 182 +K+L + P+ SAN SG+ + N I + + K + S+I+ Sbjct: 118 SKELCFRFQKPIVSTSANVSGEPAAANYGDISEEILNAVNYVCWSRRQEHKPHVPSSIIK 177 Query: 183 VQCEKKVRILR 193 + + +V ++R Sbjct: 178 LGRDGEVTVIR 188 >gi|300728246|ref|ZP_07061614.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella bryantii B14] gi|299774481|gb|EFI71105.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella bryantii B14] Length = 192 Score = 153 bits (388), Expect = 3e-35, Method: Composition-based stats. Identities = 43/194 (22%), Positives = 89/194 (45%), Gaps = 9/194 (4%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 +T ++ A + G I PT+TV+G+ D+ N A+ ++Y+IKKR LIC V Sbjct: 1 MTQEEDIKNAVAVMRKGGVILYPTDTVWGIGCDATNAEAVAKVYKIKKRDDSKALICLVD 60 Query: 66 DISMVKKHA-SVDPLSLHLAKLFW--PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 + ++++ + ++ L + P T++LD + A + R+ Sbjct: 61 SDNRLQRYFRDIPNVAWDLFESISENTKPTTVILDN--ANGVASNLVAEDGSLAVRITKE 118 Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--GLEST 179 F+ +L + P+ SAN SGQ + +N + + + + + + ++ S+ Sbjct: 119 KFSHELCYRFQKPIVSTSANISGQPAASNYRD-IDPVLLEAVDYVCASRRNEHKPHTPSS 177 Query: 180 IVNVQCEKKVRILR 193 IV + +++I+R Sbjct: 178 IVKLSQNGEIQIIR 191 >gi|260906198|ref|ZP_05914520.1| hypothetical protein BlinB_12795 [Brevibacterium linens BL2] Length = 216 Score = 153 bits (388), Expect = 3e-35, Method: Composition-based stats. Identities = 55/197 (27%), Positives = 91/197 (46%), Gaps = 5/197 (2%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 L + + G + IPT+TVYG+A D+ + +A+ L K R P V V Sbjct: 16 VLDECARVSETGNLLVIPTDTVYGIAADAFSASAVSALLAAKGRGRDMPPPVLVPRAETV 75 Query: 71 KKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129 VD L L FWPGPLT++ + + D T T R+P + Sbjct: 76 FGLVDGVDEKLLALTARFWPGPLTIIANAQPSLDWDLGDT--HGTVAVRMPDDEYALALL 133 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 PLA+ SAN SG + T+ + + ++ + +DGG+ + G+ STIV++ + Sbjct: 134 GRTGPLAVSSANVSGSPAATSADEAM-EMLGDDVDIYVDGGVRESGISSTIVDLTGDVP- 191 Query: 190 RILRPGGLEIETLKRAI 206 +I+R G + + L+ + Sbjct: 192 KIVREGPVTSDELREIV 208 >gi|293393274|ref|ZP_06637588.1| ribosome maturation factor RimN [Serratia odorifera DSM 4582] gi|291424184|gb|EFE97399.1| ribosome maturation factor RimN [Serratia odorifera DSM 4582] Length = 185 Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats. Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 8/177 (4%) Query: 18 FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77 L+ IA PTE V+GL D + A+R L +K+RP LI ++ + + + Sbjct: 11 ALNNQQVIAYPTEAVFGLGCDPDSEQALRELLALKQRPWEKGLILIAAEYDQLLPYIADS 70 Query: 78 PLSL-HLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133 LS A +F WPGP+T V+ TT L T + + RV ++L +G Sbjct: 71 QLSESQRAAIFASWPGPVTWVIPAKPTT--STLLTGHFNSLAVRVSDHPLVQQLCREFGK 128 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 PL SAN SGQ + +L P ++ G + S I + +++R Sbjct: 129 PLVSTSANLSGQEPCRSANEVL-QQFGAAFP-VLAGNVGGRLNPSEIRDALTGEQIR 183 >gi|218261693|ref|ZP_03476428.1| hypothetical protein PRABACTJOHN_02096 [Parabacteroides johnsonii DSM 18315] gi|218223857|gb|EEC96507.1| hypothetical protein PRABACTJOHN_02096 [Parabacteroides johnsonii DSM 18315] Length = 186 Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats. Identities = 50/190 (26%), Positives = 91/190 (47%), Gaps = 10/190 (5%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++KACE + AG I PT+T++G+ D+ N A++++YE+KKR ++ + Sbjct: 2 TEDIQKACEIMQAGGIILYPTDTIWGIGCDATNEKAVQKVYELKKRMDNKAMLVLTDSSA 61 Query: 69 MVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKK 126 + + S ++ L ++ PLT++ ++ + RV F++K Sbjct: 62 KLSMYVSDMPDIAWDLIEVA-DKPLTIIYPHAK--NLANNLLGEDGSVGIRVTNEEFSRK 118 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII---DGGISKIGLESTIVNV 183 L E + PL SAN SG+ S N + S SI + I+ +SK G S I+ + Sbjct: 119 LCERFRRPLVSTSANVSGEPSPGNFSEV-SDSIKNGVDYIVKYRQDDMSKAG-PSNIIKL 176 Query: 184 QCEKKVRILR 193 V+++R Sbjct: 177 GDGGVVQVIR 186 >gi|305664811|ref|YP_003861098.1| hypothetical protein FB2170_00860 [Maribacter sp. HTCC2170] gi|88707933|gb|EAR00172.1| hypothetical protein FB2170_00860 [Maribacter sp. HTCC2170] Length = 189 Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats. Identities = 45/188 (23%), Positives = 85/188 (45%), Gaps = 5/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + + L G I PT+TV+G+ D+ A++++Y +K+R LI V++ + Sbjct: 5 TAEINSCIKVLSEGGLILYPTDTVWGIGCDATKEEAVQKVYALKQREDSKALISLVANDA 64 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGFTKKL 127 M+++H P + P T++ D + P A T RV F + L Sbjct: 65 MLERHVEQVPEVAYEILDLATKPTTIIYDNPKG--LAPNVIAQDNTMAIRVASDKFCQYL 122 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL-ESTIVNVQCE 186 I + P+ SAN +GQ + + +S I K + I++ K S+I+ + + Sbjct: 123 INKFRKPIISTSANVTGQSTPKSFSE-ISEPILKGVDYIVNLEHDKKNESASSIIKLSND 181 Query: 187 KKVRILRP 194 V+++R Sbjct: 182 GTVKVIRQ 189 >gi|332531465|ref|ZP_08407369.1| sua5/ycio/yrdc/ywlc family protein [Hylemonella gracilis ATCC 19624] gi|332039134|gb|EGI75556.1| sua5/ycio/yrdc/ywlc family protein [Hylemonella gracilis ATCC 19624] Length = 207 Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats. Identities = 46/189 (24%), Positives = 81/189 (42%), Gaps = 3/189 (1%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 L++A L +G +A+PT++ Y L + A RL I++ + L D+S Sbjct: 14 QRLLKQAVALLASGQVLAVPTDSCYALVCHLDDKAAAERLRAIRRIDDKHHLTLLCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD L K PGP +L+ LS KT RVP ++L Sbjct: 74 ELANYARVDNRQYRLLKAATPGPWAFILEASKEVP-RRLSHPARKTIGLRVPDHKVLQEL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + +G PL + +G+ N + S ++ +ID G + +T++++ ++ Sbjct: 133 LALHGAPLLATTLIPAGETEPLNDAEEIRSRYQHDLAAVIDAGACPL-EPTTVIDLTGDE 191 Query: 188 KVRILRPGG 196 I R G Sbjct: 192 PEIIRRGRG 200 >gi|299141002|ref|ZP_07034140.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella oris C735] gi|298577968|gb|EFI49836.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella oris C735] Length = 189 Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats. Identities = 48/192 (25%), Positives = 87/192 (45%), Gaps = 8/192 (4%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 +T +R A E + G I PT+TV+G+ D+ N A+ ++Y IKKR LIC V Sbjct: 1 MTREEDIRNAVECMRKGGVILYPTDTVWGIGCDATNKEAVAKVYAIKKRDDSKALICLVD 60 Query: 66 DISMVKK-HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GF 123 + +++ +V ++ L P T++LD ++ A + R+ F Sbjct: 61 SDARLQRCFRNVPNVAWELLDAAI-KPTTVILD--DAVNVAENLVAEDGSLAMRITSEPF 117 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--GLESTIV 181 +K+L + P+ SAN SG+ + N K +S I + + + S+I+ Sbjct: 118 SKELCYRFQKPVVSTSANVSGEPAAANYKD-ISEEILNAVDYVCWSRRQEHKPHTPSSII 176 Query: 182 NVQCEKKVRILR 193 + +V ++R Sbjct: 177 KLGRNGEVTVIR 188 >gi|310765560|gb|ADP10510.1| Putative DNA topoisomerase [Erwinia sp. Ejp617] Length = 181 Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats. Identities = 52/183 (28%), Positives = 79/183 (43%), Gaps = 8/183 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + L IA PTE V+GL D + A+ RL +K+RP LI +D + Sbjct: 1 MAQCVQQLAQSHVIAYPTEAVFGLGCDPDSEEAVMRLLVLKQRPVKKGLILIAADYQQLI 60 Query: 72 KHASVDPL-SLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127 + + L + A++F WPGP+T VL STT T T RV L Sbjct: 61 PWIADEQLSAEQKARMFSRWPGPVTWVLPARSTT--PGWLTGQFTTLAVRVSDHPDVIAL 118 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +G PL SAN +G +V +L + + P ++ G S I +V + Sbjct: 119 CHAFGKPLVSTSANLTGLPPCRHVAEVL-AQFGPDFP-VLKGETGGRLNPSEIRDVLTGE 176 Query: 188 KVR 190 +R Sbjct: 177 LIR 179 >gi|212550954|ref|YP_002309271.1| SUA5 family translation factor [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549192|dbj|BAG83860.1| putative SUA5 family translation factor [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 189 Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats. Identities = 46/189 (24%), Positives = 90/189 (47%), Gaps = 7/189 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + K CE L G + PT+T++GL D+ N A+ R++ IKKRP ++ + Sbjct: 3 QKEIAKTCEILRNGGIVLYPTDTIWGLGCDASNEEAVERIFFIKKRPNTRTMLILLDSFD 62 Query: 69 MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + + + ++ L +F PLT++ ++ P A+ T R+ F+K+ Sbjct: 63 ELHNYVENLPEITPDLIDIFHKKPLTIIYSGAK--NVAPNLIASDGTLGIRITKDFFSKQ 120 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG--GISKIGLESTIVNVQ 184 L +PL SAN SGQ + T +S+ I + + +++ I + S+I+ ++ Sbjct: 121 LCFQLKNPLVSTSANISGQATPTTFSE-ISNEIIESVDYVVNYKRNIIQSAKPSSIIQIE 179 Query: 185 CEKKVRILR 193 ++++R Sbjct: 180 NGNSIKVIR 188 >gi|149278884|ref|ZP_01885019.1| hypothetical protein PBAL39_06896 [Pedobacter sp. BAL39] gi|149230503|gb|EDM35887.1| hypothetical protein PBAL39_06896 [Pedobacter sp. BAL39] Length = 188 Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats. Identities = 44/189 (23%), Positives = 82/189 (43%), Gaps = 8/189 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + K + L G I PT+TV+GL D+ N A+ R+ +IK R + I + + Sbjct: 3 KTEIDKTLQILKDGGVILYPTDTVWGLGCDATNEQAVERINDIKARSSDKSFIVLLDTDA 62 Query: 69 MVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKK 126 ++ + A V ++ L + + PLTLV ++ + R V GF ++ Sbjct: 63 KLQSYIAEVPDVAYDLIE-YAENPLTLVFPGAK--NLAKNVINADGSVGIRIVKHGFCQQ 119 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--GLESTIVNVQ 184 L++ + P+ SAN+SG + +S I + + ++D STI+ + Sbjct: 120 LLQRFRKPITSTSANKSGLPAPAYFDE-ISEEIKQAVDYVVDWEQELRINKKPSTIMKLA 178 Query: 185 CEKKVRILR 193 + +R Sbjct: 179 PGGQFSFIR 187 >gi|311696638|gb|ADP99511.1| Sua5/YciO/YrdC/YwlC family protein [marine bacterium HP15] Length = 190 Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats. Identities = 44/182 (24%), Positives = 76/182 (41%), Gaps = 4/182 (2%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 L A + G IA PTE V+GL D + A+ ++ E+K+RP +I S + V Sbjct: 11 QLHCARRTVLGGGVIAYPTEAVWGLGCDPWDQEAVEKVLELKQRPVEKGVILVASSLDQV 70 Query: 71 KKHASVDPLSLHL-AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLI 128 + P L A+ WPGP+T +L + + RV + L Sbjct: 71 RFLLDPLPPLLRAEAERHWPGPVTCLLPD-PERQVPEWVRGKHSSIAVRVSEHPVVRALC 129 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E G PL S N +G+ ++ + ++ I+ G + S I+++ ++ Sbjct: 130 EATGMPLVSTSCNPAGRQPARHIWQV-RGYFGDQLDWIVPGALGGNRKPSRIIDIVSGQQ 188 Query: 189 VR 190 +R Sbjct: 189 LR 190 >gi|26986815|ref|NP_742240.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas putida KT2440] gi|81442499|sp|Q88RQ9|RIMN_PSEPK RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|24981412|gb|AAN65704.1|AE016197_2 Sua5/YciO/YrdC/YwlC family protein [Pseudomonas putida KT2440] Length = 185 Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats. Identities = 43/181 (23%), Positives = 67/181 (37%), Gaps = 4/181 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A + AG IA PTE V+GL D N A+ RL +K RP LI +I Sbjct: 7 VQQAAREIRAGAVIAYPTEAVWGLGCDPWNEDAVYRLLALKSRPVDKGLILIADNIRQFD 66 Query: 72 KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130 P WPGP T ++ + T T RV + + Sbjct: 67 FLFEDFPEDWIDRMSSTWPGPNTWLVPHQD--LLPEWVTGQHDTVALRVSDHPVVRELCA 124 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 PL S N G+ + + ++ L++ G + S I ++ + VR Sbjct: 125 LVGPLISTSCNPGGRPAAKTRLRV-EQYFHGQLDLVLGGALGGRKNPSVIRDLATGEVVR 183 Query: 191 I 191 Sbjct: 184 P 184 >gi|218281197|ref|ZP_03487721.1| hypothetical protein EUBIFOR_00284 [Eubacterium biforme DSM 3989] gi|218217585|gb|EEC91123.1| hypothetical protein EUBIFOR_00284 [Eubacterium biforme DSM 3989] Length = 208 Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats. Identities = 62/199 (31%), Positives = 96/199 (48%), Gaps = 7/199 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 N + + + IA+PT+TVYG+ V N + RL K RP P+ VS++ Sbjct: 16 KNQVHEVVCAFNEHKIIALPTDTVYGVGVKYGNLDDLERLKRAKHRPETKPIPMMVSNVE 75 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 +K+ A VD +A F PG LTLV+++ + D P T L T R+P F + Sbjct: 76 QMKQVALVDERIEKIAAKFLPGALTLVVNVKESVD--PAYTNGLSTIAIRIPDEKFILDV 133 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I+ P+ + SAN+SG+ + + +I I+ G K STIV+ +K Sbjct: 134 IDELNCPILVTSANQSGEKTALTSDDVYEQL--PKIDGIVLG-TCKALQASTIVDCTKDK 190 Query: 188 KVRILRPGGLEIETLKRAI 206 + ILRPG + +E L + Sbjct: 191 -LVILRPGPISLEELNSVL 208 >gi|120552989|ref|YP_957340.1| SUA5/yciO/yrdC domain-containing protein [Marinobacter aquaeolei VT8] gi|212288209|sp|A1TWN4|RIMN_MARAV RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|120322838|gb|ABM17153.1| translation factor SUA5 [Marinobacter aquaeolei VT8] Length = 190 Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats. Identities = 45/182 (24%), Positives = 75/182 (41%), Gaps = 4/182 (2%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 L A + + AG IA PTE V+GL D N A+ + E+K+RP +I + + V Sbjct: 11 QLALARQTVLAGGVIAYPTEAVWGLGCDPWNREAVEYILELKQRPMEKGVILVAASVEQV 70 Query: 71 KKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + P ++ A WPGP+T +L + + + RV + L Sbjct: 71 RFLLDPLPDAVQSEALRHWPGPVTCLLPDV-NQQVPEWVRGKHSSIAVRVSDHPVVRALC 129 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E G PL S N +G+ + + I I+ G + S I+++ ++ Sbjct: 130 EATGMPLVSTSCNPAGRQPARAIWQV-RRYFGDRIDRIVPGALGGNRKPSRIIDIVTGQQ 188 Query: 189 VR 190 R Sbjct: 189 FR 190 >gi|113474502|ref|YP_720563.1| translation factor SUA5 [Trichodesmium erythraeum IMS101] gi|110165550|gb|ABG50090.1| translation factor SUA5 [Trichodesmium erythraeum IMS101] Length = 218 Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats. Identities = 49/198 (24%), Positives = 85/198 (42%), Gaps = 12/198 (6%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + K L G + PT+TVY + D +A+ ++ +IK+ PL S +S + Sbjct: 17 VEKIINDLKDGAVMLYPTDTVYAIGCDLYVKSAVEKVRQIKQLSNDKPLTFLCSSLSNIA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKKLIE 129 +A V+ + + K PGP T VL +T + L + KT RVP L++ Sbjct: 77 NYAVVNDSAYRIIKRLIPGPYTFVLP--ATKLVPRLVMSPKRKTTGIRVPNNQVCLTLLK 134 Query: 130 TYGHPLAIPSANRSGQ--------ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 +P+ SAN + + + K L + + +I+D G I STI+ Sbjct: 135 ALDNPIISTSANITSDAEGIAPIKVEVVTGKAELFDCLENLVDIIVDDGSDSIYQVSTIL 194 Query: 182 NVQCEKKVRILRPGGLEI 199 ++ + I + G+E Sbjct: 195 DLTGHQPNLIRQGLGVEA 212 >gi|255011315|ref|ZP_05283441.1| hypothetical protein Bfra3_19388 [Bacteroides fragilis 3_1_12] gi|313149125|ref|ZP_07811318.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313137892|gb|EFR55252.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 187 Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats. Identities = 46/189 (24%), Positives = 87/189 (46%), Gaps = 8/189 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 ++KAC+ + G I PT+TV+G+ D+ N A+RR+YEIK+R ++ V Sbjct: 3 EDIKKACQVMSEGGVILYPTDTVWGIGCDATNEDAVRRVYEIKQRADSKAMLVLVDSPVK 62 Query: 70 VKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 V+ + P ++ L ++ PLT++ ++ A + RV F+++L Sbjct: 63 VEFYVQDVPSIAWDLMEVA-DKPLTIIYS--GARNLASNLLAEDGSVGIRVTNEAFSRRL 119 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQC 185 + + + SAN SGQ N +S I + I++ + S+I+ + Sbjct: 120 CQQFRKAIVSTSANISGQPGAANFNE-ISEEIKSSVDYIVNFRQDDMSRPKPSSIIKLDK 178 Query: 186 EKKVRILRP 194 ++I+R Sbjct: 179 GGVIKIIRE 187 >gi|119961897|ref|YP_948325.1| Sua5/YciO/YrdC/YwlC family protein [Arthrobacter aurescens TC1] gi|119948756|gb|ABM07667.1| putative Sua5/YciO/YrdC/YwlC family protein [Arthrobacter aurescens TC1] Length = 304 Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats. Identities = 56/203 (27%), Positives = 91/203 (44%), Gaps = 9/203 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + L+ A + I +PT+TVYG+A D+ +P A+ L K R P + ++ Sbjct: 14 AEGLQHAQRAISEKKCIVLPTDTVYGIAADAFSPLAVTMLLASKGRSRQMPPPVLIPRVN 73 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 + A V + LA+ FWPG LTL+L + D T T R+P Sbjct: 74 ALDGLATDVPADARALAQAFWPGGLTLILHAQPSLDWDLGDTKG--TVALRMPDDQIALE 131 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG----ISKIGLESTIVNV 183 + PLA+ SANR+GQ + + + + + ++GG L STIV+ Sbjct: 132 LLGLTGPLAVSSANRTGQEAAQTASEA-RLQLAESVEVYLEGGFRPIKGTAALPSTIVDA 190 Query: 184 QCEKKVRILRPGGLEIETLKRAI 206 R++R G +E+E L+ + Sbjct: 191 TS-TPFRVVRQGAIELERLREIV 212 >gi|82703432|ref|YP_412998.1| Sua5/YciO/YrdC/YwlC [Nitrosospira multiformis ATCC 25196] gi|82411497|gb|ABB75606.1| Sua5/YciO/YrdC/YwlC [Nitrosospira multiformis ATCC 25196] Length = 210 Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats. Identities = 41/201 (20%), Positives = 75/201 (37%), Gaps = 9/201 (4%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 Q SI N +R+ + AG I PT++ Y L + + R+ ++ Sbjct: 3 QFFSIHPDNPQPRLIRQTAAIVRAGGVIVCPTDSCYALGGQLGDKNVMSRIRALRGVDED 62 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 + D + + ++A D L + PG T + L T Sbjct: 63 HHFTLMCRDFTEISRYAKFDNTEYRLLRACTPGCYTFIFQATREVP-RRLLHPRRNTIGM 121 Query: 118 RVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P + L+ PL + G+ N + + + ++ LI+D G GL Sbjct: 122 RIPDQAVVQALLAELNEPLLSSTLILPGEALPLNDPLEIRARLEHQVELILDSGAC--GL 179 Query: 177 E-STIVNVQCEKKVRILRPGG 196 E ST+V++ + V + + G Sbjct: 180 EMSTVVDLTGDTPVVVRQGKG 200 >gi|46579666|ref|YP_010474.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio vulgaris str. Hildenborough] gi|46449081|gb|AAS95733.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio vulgaris str. Hildenborough] gi|311233463|gb|ADP86317.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio vulgaris RCH1] Length = 210 Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats. Identities = 52/193 (26%), Positives = 82/193 (42%), Gaps = 4/193 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + A L G + PTET +G+ D R+ A+ ++ K+R + L + D S + Sbjct: 9 IADAVRLLAGGGVLVYPTETFFGIGCDVRDARAVDAVFRAKRRQSGMALPVILGDASQLG 68 Query: 72 KHASVD-PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGFTKKLIE 129 + LA+ FWPGPL+++ L ++ T RV P L Sbjct: 69 MVTRGHGAVEAALARDFWPGPLSILCPALP--ELPDTLTGGTGRVAVRVSPHPAAMALAL 126 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PLA SAN SG+ ++ V + + + GL ST+V+V + + Sbjct: 127 GLGAPLAASSANVSGRAAVVRVADLDRELLSGVDGVYDAPPQPAGGLPSTLVDVLTDGTL 186 Query: 190 RILRPGGLEIETL 202 RILR G + L Sbjct: 187 RILREGAVPRAAL 199 >gi|313204812|ref|YP_004043469.1| translation factor sua5 [Paludibacter propionicigenes WB4] gi|312444128|gb|ADQ80484.1| translation factor SUA5 [Paludibacter propionicigenes WB4] Length = 187 Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats. Identities = 46/188 (24%), Positives = 91/188 (48%), Gaps = 8/188 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + K E L +G I PT+TV+GL D+ N TA++R+++IKKR ++ + + Sbjct: 3 EEIIKTLEVLRSGGVILYPTDTVWGLGCDATNETAVKRIFDIKKRADAKAMLVLIDNPGK 62 Query: 70 VKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 ++ + V ++ L ++ PLT++ ++ P A K+ RV F+KKL Sbjct: 63 LQSYVDEVPDIAWDLIEMS-EKPLTIIYPQ--ARNLAPNLVAEDKSIGIRVTNEEFSKKL 119 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL--ESTIVNVQC 185 + P+ SAN SG+ + N ++ I + +++ ++ L S+I+ + Sbjct: 120 CAQFRKPIVSTSANVSGEPTPQNFSQ-ITDEIKNAVDYVVNFRREELSLPKPSSIIKLGK 178 Query: 186 EKKVRILR 193 +++R Sbjct: 179 GNLFQLIR 186 >gi|116626156|ref|YP_828312.1| translation factor SUA5 [Candidatus Solibacter usitatus Ellin6076] gi|116229318|gb|ABJ88027.1| translation factor SUA5 [Candidatus Solibacter usitatus Ellin6076] Length = 212 Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats. Identities = 53/201 (26%), Positives = 89/201 (44%), Gaps = 7/201 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 AL +A + G +AIPT+ +Y L D N A+ +++ K R L + D Sbjct: 15 PEALERAAAAVRRGKVVAIPTDALYTLVADPYNLRAVTGVFQAKGREPHRALPILIRDSM 74 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126 M ++ A ++ LA+ FWPGPLT+++ + I T N R K Sbjct: 75 MAEELASELNNRFFILARRFWPGPLTVIVPAAAK--IPLKVTGNTGRLALRHARSPVADK 132 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 LI PL SAN SG + + + + + L++DGG +G ST V++ E Sbjct: 133 LIALLNQPLISTSANISGHPTCHSGIDVFG-MMDGRVDLVLDGGTC-VGEGSTTVDIT-E 189 Query: 187 KKVRILRPGGLEIETLKRAIS 207 R+++ G + + + + Sbjct: 190 PYWRMIKEGAISEKEIAECLK 210 >gi|320534366|ref|ZP_08034852.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320133408|gb|EFW25870.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 205 Score = 152 bits (386), Expect = 5e-35, Method: Composition-based stats. Identities = 46/195 (23%), Positives = 81/195 (41%), Gaps = 4/195 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + K + L G +A PT++ Y LA N + R+ I++ + +D Sbjct: 14 ARLVEKVVDTLRDGGLVAYPTDSGYALACAPGNKEGLDRIRTIRQLDGKHNFTFVCADFG 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 V A V + L K PGP T +L L+ T R+P T+ L Sbjct: 74 QVGPLAIVGNNAFRLIKRLTPGPWTFILKGTKDVPRMTLNPKKH-TLGVRIPDHAITQSL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + +G P+ + R GQ + S+ I ++I+G + + G +T+V++ + Sbjct: 133 VAEFGAPILSSTFIRPGQEEPETNGWEIQDSLGHLIDVVIEGPVGQ-GESTTVVDLTDDV 191 Query: 188 KVRILRPGGLEIETL 202 +LR G +I L Sbjct: 192 P-EVLREGAGDISLL 205 >gi|212634746|ref|YP_002311271.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella piezotolerans WP3] gi|212556230|gb|ACJ28684.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella piezotolerans WP3] Length = 206 Score = 152 bits (386), Expect = 5e-35, Method: Composition-based stats. Identities = 41/192 (21%), Positives = 75/192 (39%), Gaps = 4/192 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A + G I PT++ Y L + A+ R+ I++ + D S Sbjct: 14 ARLISQAVNVIQQGGVIVYPTDSGYALGCLLGDKDAMSRIARIRQIDNDHNFSLMCRDQS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKL 127 + +A VD + + K PGP T + L KT RVP L Sbjct: 74 ELATYARVDNQAYRVLKHNTPGPYTFIFKASKEVP-KRLQNPKKKTIGIRVPDNVIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E PL S G+ + + + ++ LII GG +T++++ E Sbjct: 133 LEALDAPLMSTSLILPGEEFTESDPEHIRDVLEHQVDLIIHGGYLGE-KPTTVIDM-SEG 190 Query: 188 KVRILRPGGLEI 199 + ++R G ++ Sbjct: 191 DIEVIREGAGDV 202 >gi|184200616|ref|YP_001854823.1| hypothetical protein KRH_09700 [Kocuria rhizophila DC2201] gi|183580846|dbj|BAG29317.1| hypothetical protein [Kocuria rhizophila DC2201] Length = 354 Score = 152 bits (386), Expect = 5e-35, Method: Composition-based stats. Identities = 49/213 (23%), Positives = 87/213 (40%), Gaps = 13/213 (6%) Query: 21 AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-VDPL 79 G + +PT+TVYG+ D+ + ++ L K R P ++ ++ A + Sbjct: 26 DGECVVLPTDTVYGIGCDAFSAPGVQGLLGAKGRTREMPPPVLIARPEVMDALADEISDD 85 Query: 80 SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPS 139 + LA+ FWPG LT+V + T T RVP + + P+A+ S Sbjct: 86 ARALARAFWPGALTIVCWARPSLGWDLGET--HGTVALRVPDDAVTRAVLERVGPMAVSS 143 Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE--------STIVNVQCEKKVRI 191 ANR+G + + + + L ++ G + STIV+ E V + Sbjct: 144 ANRTGMPAARTAEQA-REMLQDRVALYLEAGPRPVREPAAGARDAASTIVDCTGETPV-V 201 Query: 192 LRPGGLEIETLKRAISVELEYCVDETSTPQSPG 224 LR G + ++ L+ + ++ P PG Sbjct: 202 LRHGAITLQRLREVVPAVHGGGTEDAPAPTEPG 234 >gi|296537237|ref|ZP_06899140.1| Sua5/YciO/YrdC family protein [Roseomonas cervicalis ATCC 49957] gi|296262436|gb|EFH09158.1| Sua5/YciO/YrdC family protein [Roseomonas cervicalis ATCC 49957] Length = 185 Score = 152 bits (386), Expect = 5e-35, Method: Composition-based stats. Identities = 61/178 (34%), Positives = 94/178 (52%), Gaps = 9/178 (5%) Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 +P + L+ G P+ PSANRSG +S T H+L + I ++DGG +G+E Sbjct: 1 MPAHPLAQALLRAAGVPVVAPSANRSGAVSPTTAAHVL-EGLSGRIAAVLDGGPCAVGVE 59 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAISV--ELEYCVDETSTPQSPGMLKSHYAPRSQ 235 ST++++ + +LRPGG+ + L+ + + + E + +PGML SHYAP Sbjct: 60 STVLDLTGATPL-LLRPGGVPEDALRALLGPIGRPDPALAEDAARPAPGMLASHYAPALP 118 Query: 236 VRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293 VRL A V+P+EAL+ FG + A LS++G EAA LF ++ D G Sbjct: 119 VRLEAESVSPQEALLAFGPA----LPGAGAVWQLSESGDTMEAAARLFAGLRWLDAEG 172 >gi|149375615|ref|ZP_01893384.1| putative translation factor [Marinobacter algicola DG893] gi|149360017|gb|EDM48472.1| putative translation factor [Marinobacter algicola DG893] Length = 191 Score = 152 bits (386), Expect = 5e-35, Method: Composition-based stats. Identities = 44/181 (24%), Positives = 72/181 (39%), Gaps = 4/181 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L A + G IA PTE V+GL D + A+ R+ +K+RP LI + + ++ Sbjct: 13 LHCARRTVLGGGVIAYPTEAVWGLGCDPWDQEAVERVLSLKQRPMEKGLILVAASVDQIR 72 Query: 72 KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 P A WPGP+T +L + I + RV + L E Sbjct: 73 FLLDPLPKEQQRQAMSHWPGPVTCLLPDVRQ-QIPQQVRGRHSSIAVRVSDHPVVRALCE 131 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL S N +G+ + E+ ++ G + S I+++ K++ Sbjct: 132 AAGFPLVSTSCNPAGRQPARTSWQV-RRYFEGELDWLVPGELGGNRQPSRIIDIVSGKQL 190 Query: 190 R 190 R Sbjct: 191 R 191 >gi|77456248|ref|YP_345753.1| SUA5/yciO/yrdC-like [Pseudomonas fluorescens Pf0-1] gi|123606494|sp|Q3KKE2|RIMN_PSEPF RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|77380251|gb|ABA71764.1| translation factor SUA5 [Pseudomonas fluorescens Pf0-1] Length = 185 Score = 152 bits (386), Expect = 5e-35, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 70/188 (37%), Gaps = 6/188 (3%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + +S +++A + AG IA PTE V+GL D N A+ RL IK R LI Sbjct: 1 MVNSWRVQQAAREIRAGAVIAYPTEAVWGLGCDPWNEEAVDRLLAIKNRSVDKGLILVAD 60 Query: 66 DISMVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF- 123 +I P WPGP T ++ + T T RV Sbjct: 61 NIRQFDFLFEDFPQDWIDRMASTWPGPNTWLVPHQ--NLLPEWVTGVHDTVALRVSDHPQ 118 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + L G PL SAN G+ + + ++ L++ G + S I ++ Sbjct: 119 VRDLCSLVG-PLISTSANPQGRPAARTRLRV-EQYFRGQVDLVLGGALGGRKNPSLIRDL 176 Query: 184 QCEKKVRI 191 VR Sbjct: 177 ATGNIVRP 184 >gi|154492885|ref|ZP_02032511.1| hypothetical protein PARMER_02524 [Parabacteroides merdae ATCC 43184] gi|154087190|gb|EDN86235.1| hypothetical protein PARMER_02524 [Parabacteroides merdae ATCC 43184] Length = 186 Score = 152 bits (386), Expect = 5e-35, Method: Composition-based stats. Identities = 46/189 (24%), Positives = 88/189 (46%), Gaps = 8/189 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++KACE + AG I PT+T++G+ D+ N A++++YE+KKR ++ + Sbjct: 2 TEDIQKACEIMQAGGIILYPTDTIWGIGCDATNEKAVQKVYELKKRTDNKAMLVLTDSSA 61 Query: 69 MVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKK 126 + + S ++ L ++ PLT++ ++ + RV F++K Sbjct: 62 KLSMYVSDMPDIAWDLIEVA-DKPLTIIYPHAK--NLASNLLGEDGSVGIRVTNEEFSRK 118 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQ 184 L E + PL SAN SG+ S N + S SI + I+ + S I+ + Sbjct: 119 LCERFRRPLVSTSANVSGEPSPGNFSEV-SDSIKNGVDYIVKYRQDDMSKAKPSNIIKLG 177 Query: 185 CEKKVRILR 193 ++++R Sbjct: 178 DGGVIQVIR 186 >gi|89898303|ref|YP_515413.1| translation factor SUA5 family protein [Chlamydophila felis Fe/C-56] gi|89331675|dbj|BAE81268.1| translation factor SUA5 family protein [Chlamydophila felis Fe/C-56] Length = 289 Score = 152 bits (386), Expect = 5e-35, Method: Composition-based stats. Identities = 59/215 (27%), Positives = 103/215 (47%), Gaps = 15/215 (6%) Query: 3 IMSITDSNA-LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 MS D + L++A ++L G IA PT+TVYGL V P A ++Y +K+R + Sbjct: 6 FMSGIDPDFFLQQAEDYLHKGKVIAFPTDTVYGLGVALNYPNAEEQIYALKRRDRGKSFV 65 Query: 62 CHVSDISMVKKHA--SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 +V+ I ++K + ++ +L L++ F PGPLTL++D H + FR+ Sbjct: 66 VYVNTIEDIEKISGHNLSLSALKLSQKFLPGPLTLLVD-------HKNPRFTQEKLGFRI 118 Query: 120 PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + + PL SAN S + ++ + L + G GLEST Sbjct: 119 LSLPIIEKLIHITGPLLGTSANISSFPPAITSEEVIEDF--SKEDLFVIPGKCTYGLEST 176 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV 214 IV+V ++I R G + ++ ++ + ++E C+ Sbjct: 177 IVSV---NPLKIYREGIIPLQHIEEVLGEKIESCL 208 >gi|312888915|ref|ZP_07748476.1| translation factor SUA5 [Mucilaginibacter paludis DSM 18603] gi|311298605|gb|EFQ75713.1| translation factor SUA5 [Mucilaginibacter paludis DSM 18603] Length = 188 Score = 152 bits (386), Expect = 5e-35, Method: Composition-based stats. Identities = 48/188 (25%), Positives = 89/188 (47%), Gaps = 6/188 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + A + L G I PT+T++G+ D+ NP A++++Y +K+R +I V + Sbjct: 3 KDEVNAALKVLQDGGIILYPTDTIWGIGCDAGNPEAVKKIYALKQRDEAKSMIVLVDSEN 62 Query: 69 MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126 ++ + S V ++ L + + PLTLV+ ++ P A + RV F ++ Sbjct: 63 KLESYISQVADVAYDLIE-YAENPLTLVMPGAK--NLAPNLIAADGSVGIRVTKHPFCQQ 119 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLI-IDGGISKIGLESTIVNVQC 185 LI+ PL SAN SGQ S N I + I ++ ++ STI+ ++ Sbjct: 120 LIQRLRKPLVSTSANISGQPSPKNFNSISADIIDGVDYVVNLEQHDLSEKRPSTIMRIEP 179 Query: 186 EKKVRILR 193 + + +R Sbjct: 180 DGRFEFIR 187 >gi|332996764|gb|EGK16389.1| ribosome maturation factor [Shigella flexneri K-272] Length = 172 Score = 152 bits (386), Expect = 5e-35, Method: Composition-based stats. Identities = 45/161 (27%), Positives = 68/161 (42%), Gaps = 7/161 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +A+ A + L+ IA PTE V+G+ D + TA+ RL E+K+RP LI ++ Sbjct: 8 DAIAAAIDVLNEKRVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQ 67 Query: 70 VKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 +K + + WPGP+T V +TT T + RV Sbjct: 68 LKPYIDDTMLTDVQRETIFSCWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVV 125 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLI 166 L + YG PL SAN SG V + + P++ Sbjct: 126 ALCQAYGKPLVSTSANLSGLPPCRTVDEV-RAQFGAAFPVV 165 >gi|88855317|ref|ZP_01129981.1| translation factor [marine actinobacterium PHSC20C1] gi|88815224|gb|EAR25082.1| translation factor [marine actinobacterium PHSC20C1] Length = 218 Score = 152 bits (386), Expect = 5e-35, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 89/205 (43%), Gaps = 9/205 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +R A + G + IPT+TVYG+A D+ P A+++L + K R +P + I Sbjct: 15 TGMRLARVAIGRGDLVVIPTDTVYGVAADAFQPDAVQKLIDAKGRTRQSPPPVLIPGIPT 74 Query: 70 VKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128 + A V L FWPG LT++L + + T R+P + Sbjct: 75 LDALAAEVPDEVRTLVAEFWPGGLTIILPAQPS--LSWDLGDTHGTVALRMPSSRIALEL 132 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC--- 185 + PLA+ SAN +G + + + + + +D G L STIV+ Sbjct: 133 LSETGPLAVSSANSTGLPAARSAAEA-QQMLGDSVSVYLDEGEGGE-LASTIVDATGLLT 190 Query: 186 -EKKVRILRPGGLEIETLKRAISVE 209 K+RI+R G + E +++ I + Sbjct: 191 EGGKLRIVREGVIPSEAIRKLIGAD 215 >gi|90019673|ref|YP_525500.1| translation factor SUA5 [Saccharophagus degradans 2-40] gi|123396836|sp|Q21PU1|RIMN_SACD2 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|89949273|gb|ABD79288.1| translation factor SUA5 [Saccharophagus degradans 2-40] Length = 191 Score = 152 bits (386), Expect = 5e-35, Method: Composition-based stats. Identities = 46/182 (25%), Positives = 70/182 (38%), Gaps = 5/182 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L + L G IA PTE V+GL D N A+ ++ +KKRP LI + I + Sbjct: 13 LTQCVRTLLQGGVIAYPTEAVWGLGCDPDNDHAVEKILRLKKRPVHKGLILVAASIEQLD 72 Query: 72 KHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 +P + WPG T ++ + P+ T T RV K L E Sbjct: 73 FLLHDLEPEYYQKLEASWPGANTWLIPHKG--RVSPMVTGKHATVAVRVSNHPIVKALCE 130 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 +G P+ SAN G + + + KE G + S I ++ + + Sbjct: 131 GFGGPIVSTSANPMGLSAAKSQMQV-RRYFAKEALSYATGVVGGRSTPSVIRDLYTDAII 189 Query: 190 RI 191 R Sbjct: 190 RA 191 >gi|328950484|ref|YP_004367819.1| Sua5/YciO/YrdC/YwlC family protein [Marinithermus hydrothermalis DSM 14884] gi|328450808|gb|AEB11709.1| Sua5/YciO/YrdC/YwlC family protein [Marinithermus hydrothermalis DSM 14884] Length = 197 Score = 152 bits (386), Expect = 5e-35, Method: Composition-based stats. Identities = 58/198 (29%), Positives = 95/198 (47%), Gaps = 17/198 (8%) Query: 13 RKAC---EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 R+A + L G +A PT+TV+GL + A RR+Y IK R A PL VS + Sbjct: 3 REAVTTLQVLRNGGVVAFPTDTVWGLLARMEDEAACRRIYRIKGRAAEKPLQVLVSSVEA 62 Query: 70 VKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TK 125 + A + +P+ L LA+ FWPGPLT+V+ + I P + + T R+P Sbjct: 63 ALELAELGPHEPVFLELAREFWPGPLTIVVPGQA---IPPWISPD-GTVGLRMPAHDELL 118 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +++ G A S N+SG + + L+ + + G + G+ S++V++ Sbjct: 119 EILAGVGGHAAATSLNQSGAPPARSYEEALT--FAPLVDRV-HPGDTPAGVASSVVDLVR 175 Query: 186 EKKVRILRPGGLEIETLK 203 + +LR GG+ LK Sbjct: 176 GQ---VLREGGVPASALK 190 >gi|187479076|ref|YP_787101.1| hypothetical protein BAV2596 [Bordetella avium 197N] gi|115423663|emb|CAJ50208.1| conserved hypothetical protein [Bordetella avium 197N] Length = 208 Score = 152 bits (386), Expect = 5e-35, Method: Composition-based stats. Identities = 46/189 (24%), Positives = 82/189 (43%), Gaps = 3/189 (1%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 L++A +++ G IA+PT++ Y +A + A RL ++ + L D++ Sbjct: 14 PRLLKQAAQWIGDGGLIAVPTDSSYAVAARLDDKDAADRLRRLRGLDERHHLTLLCRDLA 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + A VD L KL PGP T +L+ +S + KT RVP L Sbjct: 74 EIGQFAKVDNRQYRLLKLATPGPWTFILEATREVP-RRVSHPSRKTIGIRVPDHAVALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL + G+ N +S ++ +ID G +T++++ ++ Sbjct: 133 LEQVGAPLLSTTLIPKGEDDALNDAEAISLRFAHDLAAVIDAGACPQH-PTTVIDLTGDE 191 Query: 188 KVRILRPGG 196 V + R G Sbjct: 192 PVVLRRGRG 200 >gi|220913095|ref|YP_002488404.1| Sua5/YciO/YrdC/YwlC family protein [Arthrobacter chlorophenolicus A6] gi|219859973|gb|ACL40315.1| Sua5/YciO/YrdC/YwlC family protein [Arthrobacter chlorophenolicus A6] Length = 266 Score = 152 bits (386), Expect = 6e-35, Method: Composition-based stats. Identities = 54/219 (24%), Positives = 93/219 (42%), Gaps = 13/219 (5%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + AL A + + +PT+TVYG+A D+ +P A+ L K R P + I+ Sbjct: 14 AEALEHAQRAISEKKCVVLPTDTVYGIAADAFSPQAVTMLLVSKGRSRTMPPPVLIPRIN 73 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 + A + + LA+ FWPG LTL+ + D T T R+P + Sbjct: 74 ALDGLATDISAEARKLAEAFWPGGLTLIFHAQPSLDWDLGETKG--TVALRMPADEIAQE 131 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG----ISKIGLESTIVNV 183 + T PLA+ SANR+G + + + ++GG + STIV+ Sbjct: 132 LLTLTGPLAVSSANRTGHAPAQTAA-AAREQLADSVEVYLEGGFRPAEGADAVPSTIVDA 190 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQS 222 ++R++R G + ++ L+ + L P + Sbjct: 191 TG-PRLRVVRNGAVSLDQLREHVPGVLGL----GEIPMA 224 >gi|56972134|gb|AAH88428.1| Yrdc protein [Rattus norvegicus] Length = 272 Score = 152 bits (386), Expect = 6e-35, Method: Composition-based stats. Identities = 58/195 (29%), Positives = 96/195 (49%), Gaps = 12/195 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ALR A L AG +A+PT+T+YGLA + A+ +Y +K R PL + ++ Sbjct: 60 TEALRAAVAELRAGAVVAVPTDTLYGLACSASCSAALSCVYRLKGRSEAKPLAVCLGRVA 119 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 V ++ V + L + +PGP+TLV++ + +++ R+P F L Sbjct: 120 DVYRYCQVR-VPRELLEDLFPGPVTLVMER--SEELNKDLNPFTPLVGIRIPDHAFMLDL 176 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI------SKIGLESTIV 181 + +G PLA+ SAN S Q S +V+ + + L+IDGG + L ST+V Sbjct: 177 AQMFGGPLALTSANLSSQASSLSVEE--FQDLWPHLSLVIDGGPIGDSESPECRLGSTVV 234 Query: 182 NVQCEKKVRILRPGG 196 ++ K I+R G Sbjct: 235 DLSVPGKFGIIRSGC 249 >gi|329929001|ref|ZP_08282803.1| SUA5 domain protein [Paenibacillus sp. HGF5] gi|328936990|gb|EGG33419.1| SUA5 domain protein [Paenibacillus sp. HGF5] Length = 221 Score = 152 bits (386), Expect = 6e-35, Method: Composition-based stats. Identities = 49/184 (26%), Positives = 81/184 (44%), Gaps = 23/184 (12%) Query: 161 KEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS-----VELEYCVD 215 I ++DGG + +G+EST+V V + V +LRPGG+ E L + L+ Sbjct: 28 GAIDGVLDGGPAGVGVESTVVQVGEDGAVTVLRPGGVTAEQLAAVAASVRQDPALQRAAG 87 Query: 216 ETS--TPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIK--------------- 258 E P+SPGM +HYAP+ + + + + Sbjct: 88 EAESPAPRSPGMKYTHYAPKGAMCVVQGPRADTVSARIAAELEAAARRGEVTGVLSFDEH 147 Query: 259 -NIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLER 317 A ++++L +EAA L+ ++ D+ GA+ I + P+ GLG A+ NRL + Sbjct: 148 IGHYAADVAVSLGSLAAPEEAARRLYAGLRRFDEEGATFILAEACPDQGLGAAVMNRLLK 207 Query: 318 AAAP 321 AA Sbjct: 208 AAGH 211 >gi|300718668|ref|YP_003743471.1| hypothetical protein [Erwinia billingiae Eb661] gi|299064504|emb|CAX61624.1| Conserved uncharacterized protein [Erwinia billingiae Eb661] Length = 200 Score = 152 bits (386), Expect = 6e-35, Method: Composition-based stats. Identities = 40/186 (21%), Positives = 71/186 (38%), Gaps = 8/186 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++ L IA PTE V+GL + + +A+ L +K+RP LI ++ + Sbjct: 17 PGSVEACIHQLRQNAVIAYPTEAVFGLGCNPDSESAVMALLALKQRPVEKGLILIAANYA 76 Query: 69 MVKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-T 124 ++ + WPGP+T V+ ++T T + RV Sbjct: 77 QLQPYIDDLGLTDAQKEKMFASWPGPVTWVMPSRTST--PRWLTGRFDSLAVRVTDHPDV 134 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 ++L +G PL SAN +G + + P+ + G S I +V Sbjct: 135 QRLCLGFGKPLVSTSANLTGLEPCRTAAEV-HQQFGSDFPVFL-GNTGGRLNPSEIRDVL 192 Query: 185 CEKKVR 190 + +R Sbjct: 193 TGELIR 198 >gi|294778304|ref|ZP_06743730.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides vulgatus PC510] gi|294447932|gb|EFG16506.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides vulgatus PC510] Length = 204 Score = 152 bits (385), Expect = 6e-35, Method: Composition-based stats. Identities = 54/195 (27%), Positives = 81/195 (41%), Gaps = 9/195 (4%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICH 63 + L + L+ G I PT+T+Y + AI R+ ++K P N L Sbjct: 8 KNNNPKDLEEVIRVLEEGGLIIYPTDTMYAIGCHGLKERAIERICKLKNIDPRKNNLSII 67 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-G 122 D+S + ++A VD + L K PGP T +L+ T + P N K RVP Sbjct: 68 CYDLSNISEYAKVDNSTFKLMKRNLPGPFTFILN---TGNRLPKIFKNRKEVGIRVPDNN 124 Query: 123 FTKKLIETYGHPLAIPSANRSG--QISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 +++ P+ + I ++ KE+ LIIDGGI I STI Sbjct: 125 IIREICHILKAPIMTTTLPLKDGEDIEYITTPELIEEKFGKEVELIIDGGIGGI-EPSTI 183 Query: 181 VNVQCEKKVRILRPG 195 VN + I+R G Sbjct: 184 VNCT-NGEAEIVRQG 197 >gi|76781474|ref|NP_783194.2| yrdC domain-containing protein, mitochondrial precursor [Rattus norvegicus] gi|123781639|sp|Q499R4|YRDC_RAT RecName: Full=YrdC domain-containing protein, mitochondrial; AltName: Full=Ischemia/reperfusion-inducible protein homolog; Flags: Precursor gi|71681008|gb|AAH99797.1| YrdC domain containing (E.coli) [Rattus norvegicus] Length = 280 Score = 152 bits (385), Expect = 6e-35, Method: Composition-based stats. Identities = 58/195 (29%), Positives = 96/195 (49%), Gaps = 12/195 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ALR A L AG +A+PT+T+YGLA + A+ +Y +K R PL + ++ Sbjct: 68 TEALRAAVAELRAGAVVAVPTDTLYGLACSASCSAALSCVYRLKGRSEAKPLAVCLGRVA 127 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 V ++ V + L + +PGP+TLV++ + +++ R+P F L Sbjct: 128 DVYRYCQVR-VPRELLEDLFPGPVTLVMER--SEELNKDLNPFTPLVGIRIPDHAFMLDL 184 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI------SKIGLESTIV 181 + +G PLA+ SAN S Q S +V+ + + L+IDGG + L ST+V Sbjct: 185 AQMFGGPLALTSANLSSQASSLSVEE--FQDLWPHLSLVIDGGPIGDSESPECRLGSTVV 242 Query: 182 NVQCEKKVRILRPGG 196 ++ K I+R G Sbjct: 243 DLSVPGKFGIIRSGC 257 >gi|256827626|ref|YP_003151585.1| Sua5/YciO/YrdC/YwlC family protein [Cryptobacterium curtum DSM 15641] gi|256583769|gb|ACU94903.1| Sua5/YciO/YrdC/YwlC family protein [Cryptobacterium curtum DSM 15641] Length = 220 Score = 152 bits (385), Expect = 6e-35, Method: Composition-based stats. Identities = 56/198 (28%), Positives = 86/198 (43%), Gaps = 5/198 (2%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 L + L AG P+ PT+TVYG+ V + + +Y+ K+R P+ V I Sbjct: 24 ENLERTVAALRAGYPVIFPTDTVYGIGVSVDAAESPKAIYQAKERDLSKPVAWLVDSIEA 83 Query: 70 VKKHASVDPLSLHLAKLF-WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + P + H WPGPLTLV+ STA T R+P ++L Sbjct: 84 LDVYGDAVPAAAHALAHAQWPGPLTLVVKASERVPAAFTSTAG--TIGLRMPNHAIAREL 141 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I G P+A SAN S S + I + K + ++ D G+ ST+V+ Sbjct: 142 IRRLGCPIATSSANISAHPSTAYAQGIDPALSDKVVAVLADDSQGASGISSTVVDCTSS- 200 Query: 188 KVRILRPGGLEIETLKRA 205 +RILR G + ++ Sbjct: 201 PLRILREGSISAADVRAI 218 >gi|160900844|ref|YP_001566426.1| Sua5/YciO/YrdC/YwlC family protein [Delftia acidovorans SPH-1] gi|160366428|gb|ABX38041.1| Sua5/YciO/YrdC/YwlC family protein [Delftia acidovorans SPH-1] Length = 214 Score = 152 bits (385), Expect = 6e-35, Method: Composition-based stats. Identities = 49/198 (24%), Positives = 84/198 (42%), Gaps = 6/198 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A + L G +AIPT++ Y L + A+ RL I++ + L D+S Sbjct: 14 PRLIKQAADMLRQGAILAIPTDSSYALVCHLDDRPAVERLRRIRQINDKHHLTLLCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127 + +A VD L KL PGP T +L+ LS + KT RVP T+ L Sbjct: 74 ELSSYARVDNRQYRLLKLATPGPYTFILEASKEVP-KRLSHPSRKTIGLRVPDRKGTQLL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV---Q 184 +E G PL + G+ + + E+ I+D G +T++++ Sbjct: 133 LEQLGEPLIATTLIPPGETEALHDADAILERFPHELDAIVDAGACPS-EPTTVIDLVPMA 191 Query: 185 CEKKVRILRPGGLEIETL 202 ++R G ++ L Sbjct: 192 LGNPPTVVRQGRGSLDAL 209 >gi|269794322|ref|YP_003313777.1| translation factor SUA5 [Sanguibacter keddieii DSM 10542] gi|269096507|gb|ACZ20943.1| translation factor SUA5 [Sanguibacter keddieii DSM 10542] Length = 251 Score = 152 bits (385), Expect = 6e-35, Method: Composition-based stats. Identities = 59/218 (27%), Positives = 98/218 (44%), Gaps = 10/218 (4%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 +L +A + AG + +PT+TVYG+ D+ + A+ L K R P V ++ + Sbjct: 18 SLDEAVNTVQAGALVVLPTDTVYGIGADAFDADAVAALLAAKGRGRQMPPPVLVGSVATL 77 Query: 71 KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129 A V + LA FWPG LTL+L + + T R+P T + Sbjct: 78 DGLATEVPEAARALATRFWPGALTLILTAQPS--LAWDLGDTHGTVALRMPDHPTALALL 135 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+A+ SAN +G + T V+ + + + +D G + G+ STIV+ E + Sbjct: 136 ARTGPMAVSSANLTGGPAATTVEEA-HAQLGSSVRTYLDAGAAPGGVASTIVDATGE-TL 193 Query: 190 RILRPGGLEIETLKRAISVE-----LEYCVDETSTPQS 222 R++R G + +E L+ VE + DE S + Sbjct: 194 RVVRAGAISLEELRTVTHVEDVLPPVPEPADEASAEPA 231 >gi|71065086|ref|YP_263813.1| translation factor SUA5 [Psychrobacter arcticus 273-4] gi|71038071|gb|AAZ18379.1| translation factor SUA5 [Psychrobacter arcticus 273-4] Length = 207 Score = 152 bits (385), Expect = 6e-35, Method: Composition-based stats. Identities = 46/207 (22%), Positives = 85/207 (41%), Gaps = 8/207 (3%) Query: 1 MQIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56 MQ+ I N + + L I PT+T Y A+ +L I++ Sbjct: 1 MQVFYIHPENPQPRLIEQVANLLRKDQLIIYPTDTSYAFGCRLGAKDALEKLKHIRELDD 60 Query: 57 MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 + D+S + +A+VD + K P P+T +L+ L+ A KT Sbjct: 61 KHQFTLLCRDLSEIANYAAVDNVQFKQLKAHTPAPITFILNATKDVP-KKLAHAKKKTIG 119 Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 RVP + L+E P+ S + +I + + + +I +I+ GI Sbjct: 120 IRVPSNAIAQALLEAMDEPILTSSLILPNRDNILDDPFEIEELLGNQIDGLINAGIKTTK 179 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETL 202 L +TIV++ + ++R G ++++L Sbjct: 180 L-TTIVDMTSSQP-EVIRQGAADVDSL 204 >gi|319943942|ref|ZP_08018222.1| Sua5/YciO/YrdC/YwlC family protein [Lautropia mirabilis ATCC 51599] gi|319742703|gb|EFV95110.1| Sua5/YciO/YrdC/YwlC family protein [Lautropia mirabilis ATCC 51599] Length = 206 Score = 152 bits (385), Expect = 6e-35, Method: Composition-based stats. Identities = 51/209 (24%), Positives = 90/209 (43%), Gaps = 8/209 (3%) Query: 1 MQIMSITD----SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56 M+ + I +R+ E G +A+PT+ Y LA + TA+ R+ +++ Sbjct: 1 MKRIEIHPVNPQPRLIRQVAEQFQTGALVALPTDASYVLACHLEDRTAVDRMRQLRGIDE 60 Query: 57 MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 + L D+S + ++A VD K + PG T +L L + KT Sbjct: 61 KHLLTLLCRDLSELSQYAQVDNRQFRFLKEWTPGAYTFILPATREVP-RRLMHPSRKTVG 119 Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 RVP + L+ G PL S G + + + I K I L++DGG ++ Sbjct: 120 LRVPEAPIVQALLAELGVPLLCASLILPGDENPLSDPDDIEDRIGKRIDLLVDGGAGQL- 178 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKR 204 +++++V ++ V I R G +E + R Sbjct: 179 EATSVIDVTGDEPV-IQRVGLGPVEAMLR 206 >gi|302529113|ref|ZP_07281455.1| translation factor SUA5 [Streptomyces sp. AA4] gi|302438008|gb|EFL09824.1| translation factor SUA5 [Streptomyces sp. AA4] Length = 206 Score = 152 bits (385), Expect = 7e-35, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 69/195 (35%), Gaps = 4/195 (2%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 AL + + L IA PT++ + L N + R+ I+K + D + Sbjct: 15 RALSQVVDLLRDDGLIAYPTDSCFALGCRLGNQQGMERIRTIRKLDHRHHFTLVCQDFAQ 74 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLI 128 + + +D K PGP T +L L A KT R+P ++L+ Sbjct: 75 LGQFVHIDNAVFRAIKASTPGPYTFILPATKEVP-RRLLHAKKKTVGVRIPDHVVTQELL 133 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 G P+ + + + + +ID G + +T+++ + Sbjct: 134 GELGEPILSSTLLLPDSGEPLTQGWEIKEELDHVLDAVIDSGDCGV-EPTTVIDFSS-GE 191 Query: 189 VRILRPGGLEIETLK 203 ++R G + + Sbjct: 192 AEVVRHGAGDPSRFE 206 >gi|56478937|ref|YP_160526.1| putative translation factor YrdC/SUA5 [Aromatoleum aromaticum EbN1] gi|56314980|emb|CAI09625.1| putative translation factor YrdC/SUA5 [Aromatoleum aromaticum EbN1] Length = 209 Score = 152 bits (385), Expect = 7e-35, Method: Composition-based stats. Identities = 37/189 (19%), Positives = 74/189 (39%), Gaps = 3/189 (1%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +R+A E + +G + PT++ Y L + + + + R+ I+ + D+S Sbjct: 14 PRLIRQAAEIMRSGGLVTFPTDSAYALGGLAGDASVLLRIRRIRGVDERHHFTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD + L K PGP T +L+ + KT RVP L Sbjct: 74 EIATYARVDNMQYRLLKATTPGPYTFILEGTKELP-RRVLHPKRKTIGLRVPDHPVVAAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + P+ + G+ + + K++ L+I+ G +T++++ Sbjct: 133 LAELDEPILTSTLLLPGEDLPLTDAEEIRDRMEKQVELVIEAGFCGP-EATTVLDLTSGV 191 Query: 188 KVRILRPGG 196 V + G Sbjct: 192 PVLVRAGKG 200 >gi|320528641|ref|ZP_08029794.1| Sua5/YciO/YrdC/YwlC family protein [Solobacterium moorei F0204] gi|320131007|gb|EFW23584.1| Sua5/YciO/YrdC/YwlC family protein [Solobacterium moorei F0204] Length = 199 Score = 152 bits (385), Expect = 7e-35, Method: Composition-based stats. Identities = 53/185 (28%), Positives = 97/185 (52%), Gaps = 8/185 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L I++PT+TVYG+ + A L +K+RP +D++ +++ A V+ Sbjct: 16 LKKDGVISVPTDTVYGVCSQVFSHQAEENLRNVKRRPLTKAFPVMCADLAQIQEIAEVNE 75 Query: 79 LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGFTKKLIETYGHPLAI 137 + + + F PGP+T++L + LS NL T R+ K+I+ G P+ + Sbjct: 76 RAKKVIEGFMPGPITVILKRKDGVN---LSQENLDTIAIRMATSNTLAKIIKGLGRPIFM 132 Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197 SAN+SG+ + T++ I C ++ +++G +S G STIV+ K++ ILRPG + Sbjct: 133 TSANQSGEPTCTSLDEI--EKSCPDLDGMVEGDVS-FGEASTIVDCTK-KELAILRPGPI 188 Query: 198 EIETL 202 ++ + Sbjct: 189 TMQDI 193 >gi|294649549|ref|ZP_06726969.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter haemolyticus ATCC 19194] gi|292824536|gb|EFF83319.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter haemolyticus ATCC 19194] Length = 205 Score = 152 bits (385), Expect = 7e-35, Method: Composition-based stats. Identities = 47/208 (22%), Positives = 82/208 (39%), Gaps = 8/208 (3%) Query: 1 MQIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56 M + I N + +A + + AG + PT+ Y + N +A+ R+ +I+ Sbjct: 1 MLHLHIHPENPQARLITQAVDRIRAGDVVVYPTDAAYAIGCQIGNKSAMERIAQIRGLGP 60 Query: 57 MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 + D+S + +A VD L K P T +L S L KT Sbjct: 61 KHQYAIMCCDLSDIATYAKVDNAMYRLLKNNTPAVTTFILPATSEVP-KRLMHPKKKTIG 119 Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R+P + L++ G PL + Q + + + S + K I + ID G + Sbjct: 120 LRIPSNPVAQALLKELGEPLLTSTLILPDQKDPLDDPYDIESQLGKRIDVFIDSGFGTLS 179 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLK 203 S IV++ E I+R G ++ + Sbjct: 180 TTS-IVDLSGENP-EIIRRGVGDVSAFE 205 >gi|292493439|ref|YP_003528878.1| SUA5/yciO/yrdC domain protein [Nitrosococcus halophilus Nc4] gi|291582034|gb|ADE16491.1| SUA5/yciO/yrdC domain protein [Nitrosococcus halophilus Nc4] Length = 186 Score = 152 bits (385), Expect = 7e-35, Method: Composition-based stats. Identities = 45/183 (24%), Positives = 78/183 (42%), Gaps = 9/183 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +R A + G +A PTE V+GL D A+ R+ ++K R LI +D + ++ Sbjct: 9 VRLAARMIHGGGVVAYPTEGVFGLGCDPLQGAAVERILKLKGRSVDKGLILIAADFAQLQ 68 Query: 72 KHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + PL+ + WPGP+T +L + D+ T RV L Sbjct: 69 SY--LLPLTAQIRARLEGTWPGPVTWLLPARA--DVPRWLRGRHDTLAVRVTAHPLAACL 124 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G + SANR+G+ + S+ I I+ G I + S I + + + Sbjct: 125 CQRVGSAIVSTSANRAGRPPARTTLQV-RRSLGAGIDYILPGAIGRRAGPSEIRDGRTGQ 183 Query: 188 KVR 190 ++R Sbjct: 184 RIR 186 >gi|167752335|ref|ZP_02424462.1| hypothetical protein ALIPUT_00579 [Alistipes putredinis DSM 17216] gi|167660576|gb|EDS04706.1| hypothetical protein ALIPUT_00579 [Alistipes putredinis DSM 17216] Length = 192 Score = 152 bits (385), Expect = 7e-35, Method: Composition-based stats. Identities = 45/191 (23%), Positives = 80/191 (41%), Gaps = 6/191 (3%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 T A+ +A L G I PT+TV+G+ D+ N A+ R+Y +K+ ++ + Sbjct: 5 TMEQAVTEAVRILREGGVILYPTDTVWGIGCDATNAEAVERIYRLKRSENKKSMLVLCAT 64 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 MV ++ P + PLTL+L + + T R+P F + Sbjct: 65 PDMVVRYVHKAPGIAFEVQELATKPLTLILP--GASGVAANLIPEEGTLGVRIPDHAFCQ 122 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG--GISKIGLESTIVNV 183 ++ G P+ SAN SG+ + N+ I I + +++ G S+I+ Sbjct: 123 AMLRKLGRPIVSTSANISGEDTPRNLAEISREIIDG-VDYVVNPKFEGKPTGKASSILLF 181 Query: 184 QCEKKVRILRP 194 + RI+R Sbjct: 182 NEAGEFRIIRE 192 >gi|255071095|ref|XP_002507629.1| predicted protein [Micromonas sp. RCC299] gi|226522904|gb|ACO68887.1| predicted protein [Micromonas sp. RCC299] Length = 289 Score = 152 bits (385), Expect = 8e-35, Method: Composition-based stats. Identities = 63/217 (29%), Positives = 104/217 (47%), Gaps = 5/217 (2%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 ++I+ T + A + L IA+PT+T+YGLA + + +IRRLY K+R P+ Sbjct: 76 LRILPATSQR-VTDAVDALRRERIIAVPTDTLYGLAAGAHSDKSIRRLYAAKRRSETVPI 134 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 VSD V+++A L+ L PGP+T++L S+ D+ N + R+P Sbjct: 135 AICVSDAKDVERYADTKHLAEGLLDELLPGPVTVLLSQKSSADLPSSLNPNSRLMGIRIP 194 Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LES 178 F + + YGH LA+ SAN+SG S ++ + + + + DGG G + S Sbjct: 195 KSDFIRAVARQYGHALALTSANQSGSASTLDLNE--FTELWDDCAFVFDGGRIVSGRVGS 252 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD 215 +IV++ + R G +T K + L D Sbjct: 253 SIVDLSLPGTFSVQRRGDKYEDTRKTLMKFGLRQLPD 289 >gi|77166277|ref|YP_344802.1| putative translation factor, SUA5/yciO/yrdC-like [Nitrosococcus oceani ATCC 19707] gi|254435884|ref|ZP_05049391.1| hypothetical protein NOC27_2947 [Nitrosococcus oceani AFC27] gi|123593358|sp|Q3J7C4|RIMN_NITOC RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|76884591|gb|ABA59272.1| translation factor SUA5 [Nitrosococcus oceani ATCC 19707] gi|207088995|gb|EDZ66267.1| hypothetical protein NOC27_2947 [Nitrosococcus oceani AFC27] Length = 185 Score = 152 bits (384), Expect = 8e-35, Method: Composition-based stats. Identities = 47/181 (25%), Positives = 75/181 (41%), Gaps = 5/181 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +R A + G IA PTE V+GL D AI R+ ++K R I +D ++ Sbjct: 8 VRLAARIIRGGGVIAYPTEGVFGLGCDPGRKAAIERILQLKGRSISKGFILIAADFVQLQ 67 Query: 72 KH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + + + ++ WPGP+T +L + D+ P T RV L Sbjct: 68 SYLLPLTASTRSRLEVTWPGPVTWLLP--ARGDVPPWLRGRYDTLAVRVTAHPLAACLCR 125 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 T GH L SANR+G+ + S + I+ G K S I + + +++ Sbjct: 126 TLGHALVSTSANRAGRPPAQTTLQV-RRSFGSSLDYILPGITGKRAGPSEIRDGRTGQRL 184 Query: 190 R 190 R Sbjct: 185 R 185 >gi|126668173|ref|ZP_01739134.1| hypothetical protein MELB17_23665 [Marinobacter sp. ELB17] gi|126627322|gb|EAZ97958.1| hypothetical protein MELB17_23665 [Marinobacter sp. ELB17] Length = 190 Score = 152 bits (384), Expect = 9e-35, Method: Composition-based stats. Identities = 43/184 (23%), Positives = 78/184 (42%), Gaps = 8/184 (4%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 L A L G +A PTE V+GL D N A++R+ ++K+RP +I + + + Sbjct: 11 QLHCARRTLHQGGVLAYPTEAVWGLGCDPWNQVAVQRILDLKQRPVHKGMILVAASVEQI 70 Query: 71 KKHASVDPLSLHL---AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 ++PL L A+ WPGP+T +L + + + RV K Sbjct: 71 VFL--LNPLPQDLQQRARQHWPGPVTCLLPDV-HQQVPEWVRGEHSSIAVRVSAHPVVKA 127 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L G PL S N +G+ + + ++ ++ G + S I+++ Sbjct: 128 LCNAVGSPLVSTSCNPAGRAPARSPWQVQG-YFHGQLDWVVPGALGGNRQPSRIIDIVTG 186 Query: 187 KKVR 190 +++R Sbjct: 187 QQLR 190 >gi|160883231|ref|ZP_02064234.1| hypothetical protein BACOVA_01200 [Bacteroides ovatus ATCC 8483] gi|237719187|ref|ZP_04549668.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|260171883|ref|ZP_05758295.1| putative translation factor [Bacteroides sp. D2] gi|293372316|ref|ZP_06618701.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides ovatus SD CMC 3f] gi|299148260|ref|ZP_07041322.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 3_1_23] gi|315920195|ref|ZP_07916435.1| conserved hypothetical protein [Bacteroides sp. D2] gi|156111456|gb|EDO13201.1| hypothetical protein BACOVA_01200 [Bacteroides ovatus ATCC 8483] gi|229451566|gb|EEO57357.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|292632758|gb|EFF51351.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides ovatus SD CMC 3f] gi|298513021|gb|EFI36908.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 3_1_23] gi|313694070|gb|EFS30905.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 187 Score = 152 bits (384), Expect = 9e-35, Method: Composition-based stats. Identities = 47/189 (24%), Positives = 87/189 (46%), Gaps = 8/189 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 ++KAC+ ++ G I PT+TV+G+ D+ N A+RR+YEIKKR ++ V Sbjct: 3 EDIKKACQVMNEGGVILYPTDTVWGIGCDATNEEAVRRVYEIKKRADSKAMLVLVDSPVK 62 Query: 70 VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 V + V ++ L ++ PLT++ ++ A + RV F+++L Sbjct: 63 VDFYVQDVPDVAWDLIEVA-DKPLTIIYS--GARNLASNLLAEDGSVGIRVTNEDFSRRL 119 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQC 185 + + + SAN SGQ N +S I + I+ + S+I+ ++ Sbjct: 120 CQQFRKAIVSTSANVSGQPGAANFSE-ISDEIKSAVDYIVGFRQDDMSRPRPSSIIKLEK 178 Query: 186 EKKVRILRP 194 ++I+R Sbjct: 179 GGVIKIIRE 187 >gi|24374541|ref|NP_718584.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella oneidensis MR-1] gi|24349133|gb|AAN56028.1|AE015738_3 Sua5/YciO/YrdC/YwlC family protein [Shewanella oneidensis MR-1] Length = 206 Score = 152 bits (384), Expect = 9e-35, Method: Composition-based stats. Identities = 40/192 (20%), Positives = 73/192 (38%), Gaps = 4/192 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A L +G I PT++ Y L A+ R+ I++ + D+S Sbjct: 14 ARLISQAVAVLKSGGVIVYPTDSGYALGCMIGEKDAMTRITRIRQIEHDHNFSLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKL 127 + +A VD + + K PGP T + L KT RVP L Sbjct: 74 ELATYAKVDNQAYRILKSCTPGPYTFIFKASKEVP-RRLQNDKKKTIGIRVPDNVIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E PL S + + + ++ +II GG +T++++ + Sbjct: 133 LEALDAPLMSTSLVMPDAEFAESDPEQIRDLLEHQVDVIIHGGYLGE-KPTTVIDMSEDG 191 Query: 188 KVRILRPGGLEI 199 +LR G ++ Sbjct: 192 -FEVLREGAGDV 202 >gi|300741302|ref|ZP_07071323.1| Sua5/YciO/YrdC/YwlC family protein [Rothia dentocariosa M567] gi|300380487|gb|EFJ77049.1| Sua5/YciO/YrdC/YwlC family protein [Rothia dentocariosa M567] Length = 325 Score = 152 bits (384), Expect = 9e-35, Method: Composition-based stats. Identities = 55/199 (27%), Positives = 94/199 (47%), Gaps = 16/199 (8%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-VD 77 ++A I IPT+TVYG+A D+ + + +L K R P + D++ + A + Sbjct: 1 MNAHETIVIPTDTVYGIACDAFSHQGVSKLLADKGRSRTMPPPVLIFDLAALAGVADEIP 60 Query: 78 PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136 L FWPG LT++L + T T RVP F KL+ +G PLA Sbjct: 61 NDVYDLGNKFWPGALTIILYSYPSLTWDLGET--QGTVAVRVPDDKFALKLLTEHG-PLA 117 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGI-------SKIG--LESTIVNVQCEK 187 + SAN++GQ + N K L+ + +++ L++D G +G STI++ Sbjct: 118 VSSANKTGQPAAANAKEALT-QLGEDVTLVVDDGPRPAPQEDGSVGESKPSTILDCTS-T 175 Query: 188 KVRILRPGGLEIETLKRAI 206 ++R G + ++ L+ + Sbjct: 176 PYVVVREGAITVKELREVV 194 >gi|253570302|ref|ZP_04847711.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|298384884|ref|ZP_06994443.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 1_1_14] gi|251840683|gb|EES68765.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|298262028|gb|EFI04893.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 1_1_14] Length = 187 Score = 152 bits (384), Expect = 9e-35, Method: Composition-based stats. Identities = 46/189 (24%), Positives = 86/189 (45%), Gaps = 8/189 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 ++KAC+ ++ G I PT+TV+G+ D+ N A+ R+YEIKKR ++ V Sbjct: 3 EDIKKACQVMNEGGVILYPTDTVWGIGCDATNEEAVHRVYEIKKRADSKAMLVLVDSPVK 62 Query: 70 VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 V + V ++ L ++ PLT++ ++ P A + RV F+++L Sbjct: 63 VDFYVQDVPDVAWDLIEVA-DKPLTIIYS--GARNLAPNLLAEDGSVGIRVTNEEFSRRL 119 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQC 185 + + + SAN SGQ N +S + + I+ + S+I+ + Sbjct: 120 CQQFRKAIVSTSANISGQPGAANFTE-ISEEVKSAVDYIVGFRQDDMSRPKPSSIIKLDK 178 Query: 186 EKKVRILRP 194 ++I+R Sbjct: 179 GGVIKIIRE 187 >gi|238786121|ref|ZP_04630076.1| hypothetical protein yberc0001_36560 [Yersinia bercovieri ATCC 43970] gi|238712973|gb|EEQ05030.1| hypothetical protein yberc0001_36560 [Yersinia bercovieri ATCC 43970] Length = 178 Score = 152 bits (384), Expect = 9e-35, Method: Composition-based stats. Identities = 41/173 (23%), Positives = 71/173 (41%), Gaps = 4/173 (2%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 + PT++ Y L + TA+ R+ I++ + D+S + +A VD + L Sbjct: 2 VVYPTDSGYALGCRLEDKTAMERICRIRQLDGNHNFTLVCRDLSELSTYAYVDNSAFRLI 61 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRS 143 K PG T +L L KT RVP L++ G PL + Sbjct: 62 KNNTPGNYTFILKATKEVP-RRLMNDKRKTIGLRVPSNPIALALLDVLGEPLMSTTLMLP 120 Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 G + + + K++ LII GG S +T++++ + V ++R G Sbjct: 121 GNDFAESDPEEIKEHLGKQVDLIIHGG-SLGQQPTTVIDLT-DSSVAVIREGA 171 >gi|29349351|ref|NP_812854.1| putative translation factor [Bacteroides thetaiotaomicron VPI-5482] gi|29341259|gb|AAO79048.1| conserved hypothetical protein, putative translation factor [Bacteroides thetaiotaomicron VPI-5482] Length = 187 Score = 152 bits (384), Expect = 9e-35, Method: Composition-based stats. Identities = 46/189 (24%), Positives = 86/189 (45%), Gaps = 8/189 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 ++KAC+ ++ G I PT+TV+G+ D+ N A+ R+YEIKKR ++ V Sbjct: 3 EDIKKACQVMNEGGVILYPTDTVWGIGCDATNEEAVHRVYEIKKRADSKAMLVLVDSPVK 62 Query: 70 VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 V + V ++ L ++ PLT++ ++ P A + RV F+++L Sbjct: 63 VDFYVQDVPDVAWDLIEVA-DKPLTIIYS--GARNLAPNLLAEDGSVGIRVTNEEFSRRL 119 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQC 185 + + + SAN SGQ N +S + + I+ + S+I+ + Sbjct: 120 CQQFRKAIVSTSANISGQPGAANFTE-ISEEVKSAVDYIVSFRQDDMSRPKPSSIIKLDK 178 Query: 186 EKKVRILRP 194 ++I+R Sbjct: 179 GGVIKIIRE 187 >gi|163750229|ref|ZP_02157471.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella benthica KT99] gi|161330085|gb|EDQ01069.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella benthica KT99] Length = 206 Score = 152 bits (384), Expect = 9e-35, Method: Composition-based stats. Identities = 42/192 (21%), Positives = 73/192 (38%), Gaps = 4/192 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A L G I PT++ Y L N A+ R+ I++ + D S Sbjct: 14 PRLINQAVNALKNGGVIVYPTDSGYALGCMLGNKDAMSRMARIRQIDNDHNFSLMCRDQS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKL 127 + +A VD + + K PGP T + L KT RVP L Sbjct: 74 ELSTYAKVDNQAYRVLKHHTPGPYTFIFKASKEVP-KRLQNPKKKTIGIRVPDNVIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E PL S G+ + + + ++ II GG +T++++ + Sbjct: 133 LEALDAPLMSTSLILPGEEFTESDPEHIRDILEHQVDAIIHGGYLGE-KPTTVIDM-SDG 190 Query: 188 KVRILRPGGLEI 199 + ++R G +I Sbjct: 191 DMVVIREGAGDI 202 >gi|262369302|ref|ZP_06062630.1| yrdC domain-containing protein [Acinetobacter johnsonii SH046] gi|262315370|gb|EEY96409.1| yrdC domain-containing protein [Acinetobacter johnsonii SH046] Length = 205 Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats. Identities = 43/196 (21%), Positives = 81/196 (41%), Gaps = 4/196 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ +A E + AG + PT+ Y + N A+ R+ +I+ A + +D+S Sbjct: 13 ARSISQAVERIRAGDVVVYPTDAAYAIGCQIGNKNAMERIAQIRGLGAKHQYAIICADLS 72 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD L K P T +L S L KT R+P + L Sbjct: 73 DIATYAKVDNAMYRLLKNNTPAVTTFILPATSEVP-KRLMHPKKKTIGLRIPSNPVCQML 131 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ G PL + Q + + + + K I + ID G+ + S IV++ + Sbjct: 132 LKELGEPLLTSTLILPNQEEPLDDPYDIEMQLSKRIDVFIDSGLGTLSTTS-IVDLSGDH 190 Query: 188 KVRILRPGGLEIETLK 203 ++R G ++ + Sbjct: 191 P-EVIRRGLGDVSAFE 205 >gi|70733538|ref|YP_257177.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas fluorescens Pf-5] gi|123658961|sp|Q4KKQ6|RIMN_PSEF5 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|68347837|gb|AAY95443.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas fluorescens Pf-5] Length = 185 Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats. Identities = 48/188 (25%), Positives = 73/188 (38%), Gaps = 6/188 (3%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + S +++A + AG IA PTE V+GL D N A+ RL IK R LI Sbjct: 1 MVSSWRVQQAAREIRAGAVIAYPTEAVWGLGCDPWNEEAVDRLLAIKSRSVDKGLILIAD 60 Query: 66 DISMVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 +I P + WPGP T ++ + T T RV Sbjct: 61 NIHQFDFLFEDFPDTWIDRMSSTWPGPNTWLVPHQ--NLLPEWVTGVHDTVALRVSDHPL 118 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 ++L G PL SAN G+ + + + ++ L++ G + S I ++ Sbjct: 119 VRELCSLVG-PLISTSANPQGRPAART-RLRIEQYFRGQLDLVLSGSLGGRKNPSLIRDL 176 Query: 184 QCEKKVRI 191 K VR Sbjct: 177 ATGKVVRP 184 >gi|153807334|ref|ZP_01960002.1| hypothetical protein BACCAC_01612 [Bacteroides caccae ATCC 43185] gi|149129696|gb|EDM20908.1| hypothetical protein BACCAC_01612 [Bacteroides caccae ATCC 43185] Length = 187 Score = 151 bits (383), Expect = 1e-34, Method: Composition-based stats. Identities = 49/189 (25%), Positives = 87/189 (46%), Gaps = 8/189 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 ++KAC+ ++ G I PT+TV+G+ D+ N A+RR+YEIKKR ++ V Sbjct: 3 EDIKKACQVMNEGGVILYPTDTVWGIGCDATNEEAVRRVYEIKKRADSKAMLVLVDSSVK 62 Query: 70 VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 V + V ++ L ++ PLT++ ++ P A + RV F+K+L Sbjct: 63 VDFYVQDVPDVAWDLIEVA-DKPLTIIYS--GARNLAPNLLAEDGSVGIRVTNEAFSKRL 119 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQC 185 + + + SAN SGQ N +S I + I+ + S+I+ + Sbjct: 120 CQQFRKAIVSTSANVSGQPGAANFSE-ISDEIKSAVDYIVGYRQDDMSRPKPSSIIKLDK 178 Query: 186 EKKVRILRP 194 ++I+R Sbjct: 179 GGVIKIIRE 187 >gi|313496442|gb|ADR57808.1| RimN [Pseudomonas putida BIRD-1] Length = 185 Score = 151 bits (383), Expect = 1e-34, Method: Composition-based stats. Identities = 43/181 (23%), Positives = 67/181 (37%), Gaps = 4/181 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A + AG IA PTE V+GL D N A+ RL +K RP LI +I Sbjct: 7 VQQAAREIRAGAVIAYPTEAVWGLGCDPWNEDAVYRLLALKSRPVDKGLILVADNIRQFD 66 Query: 72 KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130 P WPGP T ++ + T T RV + + Sbjct: 67 FLFEDFPEDWIDRMGSTWPGPNTWLVPHQD--LLPEWVTGQHDTVALRVSDHPVVRELCA 124 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 PL S N G+ + + ++ L++ G + S I ++ + VR Sbjct: 125 LVGPLISTSCNPGGRPAAKTRLRV-EQYFHGQLDLVLGGALGGRKNPSVIRDLATGEVVR 183 Query: 191 I 191 Sbjct: 184 P 184 >gi|314927904|gb|EFS91735.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL044PA1] gi|328907362|gb|EGG27128.1| Sua5/YciO/YrdC domain-containing protein [Propionibacterium sp. P08] Length = 213 Score = 151 bits (383), Expect = 1e-34, Method: Composition-based stats. Identities = 40/189 (21%), Positives = 74/189 (39%), Gaps = 5/189 (2%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +L + + L G IA PT+T Y N A+ R+ ++++ + +S + Sbjct: 22 RSLNQVVDILHGGGLIAYPTDTGYAFGARLGNKDALDRIRKLRQLSDKHHFTLVMSRFAQ 81 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCGF-TKKL 127 V ++ +D + PG T +L +T D+ + KT RVP L Sbjct: 82 VGQYVQMDNWVFRAVRAAVPGRYTFIL--KATRDVPKVMLHPRKKTVGIRVPEHVTALAL 139 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E P+ + GQ + + I ++ ++D G + +T+V+ K Sbjct: 140 LEALNEPIVSSTLILPGQDTPMVDGWQVQDEIGDQLDAVLDSGDCGV-EPTTVVDFTSGK 198 Query: 188 KVRILRPGG 196 V R G Sbjct: 199 PVITRRGAG 207 >gi|226953462|ref|ZP_03823926.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter sp. ATCC 27244] gi|226835804|gb|EEH68187.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter sp. ATCC 27244] Length = 205 Score = 151 bits (383), Expect = 1e-34, Method: Composition-based stats. Identities = 46/208 (22%), Positives = 82/208 (39%), Gaps = 8/208 (3%) Query: 1 MQIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56 M + I N + +A + + AG + PT+ Y + N +A+ R+ +I+ Sbjct: 1 MLHLHIHPENPQARLITQAVDRIRAGDVVVYPTDAAYAIGCQIGNKSAMERIAQIRGLGP 60 Query: 57 MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 + D+S + +A VD L K P T +L S L KT Sbjct: 61 KHQYAIMCCDLSDIATYAKVDNAMYRLLKNNTPAVTTFILPATSEVP-KRLMHPKKKTIG 119 Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R+P + L++ G PL + Q + + + + + K I + ID G + Sbjct: 120 LRIPSNPVAQALLKELGEPLLTSTLILPDQKDPLDDPYDIENQLGKRIDVFIDSGFGTLS 179 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLK 203 S IV++ E I+R G ++ + Sbjct: 180 TTS-IVDLSGENP-EIIRRGVGDVSAFE 205 >gi|300815507|ref|ZP_07095732.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 107-1] gi|300532399|gb|EFK53461.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 107-1] gi|323164847|gb|EFZ50638.1| ribosome maturation factor [Shigella sonnei 53G] gi|323173920|gb|EFZ59548.1| ribosome maturation factor [Escherichia coli LT-68] Length = 172 Score = 151 bits (383), Expect = 1e-34, Method: Composition-based stats. Identities = 46/161 (28%), Positives = 70/161 (43%), Gaps = 7/161 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +A+ A + L+ IA PTE V+G+ D + TA+ RL E+K+RP LI ++ Sbjct: 8 DAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQ 67 Query: 70 VKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125 +K + L+ + WPGP+T V +TT T + RV Sbjct: 68 LKPYIDDTMLTDAQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVV 125 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLI 166 L + YG PL SAN SG V + + P++ Sbjct: 126 ALCQAYGKPLVSTSANLSGLPPCRTVDEV-RAQFGAAFPVV 165 >gi|326773289|ref|ZP_08232572.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces viscosus C505] gi|326636519|gb|EGE37422.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces viscosus C505] Length = 205 Score = 151 bits (383), Expect = 1e-34, Method: Composition-based stats. Identities = 42/192 (21%), Positives = 81/192 (42%), Gaps = 4/192 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + K + L G +A PT++ Y LA N + R+ I++ + +D + V Sbjct: 17 VEKVVDTLRDGGLVAYPTDSGYALACAPGNKEGLDRIRTIRQLDGKHNFTFVCADFAQVG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 A V + L K PGP T +L L+ T R+P T+ L+ Sbjct: 77 PLAIVGNNAFRLIKRLTPGPWTFILKGTKDVPRMTLNPKKH-TLGVRIPDHAITQSLVAE 135 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 +G P+ + R GQ + S+ I ++++G + + G ++++++ + Sbjct: 136 FGAPILSSTFIRPGQEEPETNGWEIQDSLGHLIDVVVEGPVGQ-GEPTSVIDLTDDVP-E 193 Query: 191 ILRPGGLEIETL 202 +LR G ++ L Sbjct: 194 VLREGAGDVSLL 205 >gi|113969806|ref|YP_733599.1| translation factor SUA5 [Shewanella sp. MR-4] gi|114047035|ref|YP_737585.1| translation factor SUA5 [Shewanella sp. MR-7] gi|113884490|gb|ABI38542.1| translation factor SUA5 [Shewanella sp. MR-4] gi|113888477|gb|ABI42528.1| translation factor SUA5 [Shewanella sp. MR-7] Length = 206 Score = 151 bits (383), Expect = 1e-34, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 72/189 (38%), Gaps = 4/189 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A L +G I PT++ Y L A+ R+ I++ + D+S + Sbjct: 17 ISQAVAVLKSGGVIVYPTDSGYALGCMIGEKDAMTRITRIRQIEHDHNFSLMCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIET 130 +A VD + + K PGP T + L KT RVP L+E Sbjct: 77 TYAKVDNQAYRILKSCTPGPYTFIFKASKEVP-RRLQNDKKKTIGIRVPDNVIALALLEA 135 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 PL S + + + ++ +I+ GG +T++++ + Sbjct: 136 LDAPLMSTSLVMPNSDFAESDPEHIRDLLEHQVDVILHGGYLGE-KPTTVIDMSEDG-FE 193 Query: 191 ILRPGGLEI 199 +LR G ++ Sbjct: 194 VLREGAGDV 202 >gi|327405855|ref|YP_004346693.1| Sua5/YciO/YrdC/YwlC family protein [Fluviicola taffensis DSM 16823] gi|327321363|gb|AEA45855.1| Sua5/YciO/YrdC/YwlC family protein [Fluviicola taffensis DSM 16823] Length = 185 Score = 151 bits (383), Expect = 1e-34, Method: Composition-based stats. Identities = 45/183 (24%), Positives = 82/183 (44%), Gaps = 5/183 (2%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 + E L G I PT+T++G+ D+ N A +R+ EIK+RP I V M++K Sbjct: 5 QTIIEALKNGKTILYPTDTIWGIGCDATNEQACQRILEIKQRPKDKSFILLVDSFQMIEK 64 Query: 73 HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETY 131 + P + PLT++ + P A + R+ LI + Sbjct: 65 YIPEFPAVCYDLADLADKPLTIIYPN--AQGLAPSVLAEDGSVGIRITKDPICLALIRSI 122 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI-SKIGLESTIVNVQCEKKVR 190 PL SAN SG+ TN ++S+I +++ I++ ++ S I+ + + ++ Sbjct: 123 RLPLVSTSANISGKPFPTNFSD-INSAIKQQVEAILELKTNEQLSTPSQIIKIGLDSSIQ 181 Query: 191 ILR 193 ++R Sbjct: 182 VIR 184 >gi|254515967|ref|ZP_05128027.1| SUA5/YciO/yrdC, N-terminal domain [gamma proteobacterium NOR5-3] gi|219675689|gb|EED32055.1| SUA5/YciO/yrdC, N-terminal domain [gamma proteobacterium NOR5-3] Length = 187 Score = 151 bits (383), Expect = 1e-34, Method: Composition-based stats. Identities = 50/181 (27%), Positives = 84/181 (46%), Gaps = 5/181 (2%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK- 71 R L G IA PTE V+GL+ D + +A++RL ++K+RPA LI D S ++ Sbjct: 10 RLCANVLAGGGVIACPTEAVWGLSCDPFSGSAVQRLLDLKQRPAHKGLILVAGDESQLEF 69 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIET 130 A + P ++ WPGP T ++ + L ++ RV ++L Sbjct: 70 LLADLAPALRQKLRVSWPGPNTWLVPHHG--RVPALVHGKFESVAVRVSGHPGVRELCRV 127 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 YG PL SAN +GQ + + + + + ++ G ++ G STI +V ++ R Sbjct: 128 YGGPLVSSSANVAGQPAPKTLLAV-RNYFGTRLDGLLPGQVAAAGRPSTIRDVFTDEVFR 186 Query: 191 I 191 Sbjct: 187 A 187 >gi|255004138|ref|ZP_05278939.1| hypothetical protein AmarV_01920 [Anaplasma marginale str. Virginia] Length = 214 Score = 151 bits (383), Expect = 1e-34, Method: Composition-based stats. Identities = 47/181 (25%), Positives = 88/181 (48%), Gaps = 4/181 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++ E L + PT+T+Y LA + + +++RLYEIK+R P+ ++ ++ ++ Sbjct: 1 MQRVVEALRKEQIVCFPTDTLYALACSALSANSVQRLYEIKRRQYHKPIPILLNSLAAIR 60 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 K AS+ + + PGP+T V+ L T + T R+P + ++E Sbjct: 61 KFASLKDEDWGIIERLSPGPVTFVVPLHDTQSLPGEFF--RGTVGVRIPNHAMARTILEE 118 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 +G P+A SAN SG + I + +++ + G+ ST+ +VQ K +R Sbjct: 119 FGGPVAATSANLSGMPGARRAME-IPQEIRDCVSELMEDDSAVGGMCSTVFDVQSRKVLR 177 Query: 191 I 191 I Sbjct: 178 I 178 >gi|313207112|ref|YP_004046289.1| translation factor sua5 [Riemerella anatipestifer DSM 15868] gi|312446428|gb|ADQ82783.1| translation factor SUA5 [Riemerella anatipestifer DSM 15868] gi|315022490|gb|EFT35517.1| Sua5 YciO YrdC YwlC family protein [Riemerella anatipestifer RA-YM] gi|325335450|gb|ADZ11724.1| Sua5B [Riemerella anatipestifer RA-GD] Length = 182 Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats. Identities = 45/186 (24%), Positives = 86/186 (46%), Gaps = 7/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++ E L +G + PT+T++GL D+ NP AI+++Y+IKKR LI V ++ Sbjct: 1 MQEIVEVLKSGGTVLYPTDTIWGLGCDATNPEAIQKIYKIKKREPHKSLIILVDTEKRLQ 60 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLIET 130 V ++ + P+T++ D + + A + R V F +KLI Sbjct: 61 DLVEVPEMAWEIID-LSEKPVTIIYD--APKGLPKELLAEDGSIGIRLVKDAFCQKLIGK 117 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL--ESTIVNVQCEKK 188 PL SAN SG S +S + + +++ K+ S+++ + + + Sbjct: 118 LNAPLVSTSANFSGDKSPKQFSD-ISPKLIDAVDFVVEEQKDKVSQWAGSSVIRIWKDNR 176 Query: 189 VRILRP 194 +++LR Sbjct: 177 IKVLRE 182 >gi|57032998|gb|AAH88928.1| LOC496333 protein [Xenopus laevis] Length = 204 Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats. Identities = 51/185 (27%), Positives = 90/185 (48%), Gaps = 12/185 (6%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L G I +PT+T+YG+A ++N +I +Y +K R PL V ++ + ++ V+ Sbjct: 6 LQQGGVIGVPTDTIYGIACLAQNSQSISNIYNVKGRNGTKPLAICVGNVEDIYRYCQVN- 64 Query: 79 LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAI 137 + L + PGP+TLV++ + ++ R+P F ++L E PLA+ Sbjct: 65 VPDQLLRDLLPGPVTLVMER--SGRLNKELNPFTSLVGVRIPDHAFIRQLAEVCSEPLAL 122 Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGI------SKIGLESTIVNVQCEKKVRI 191 SAN S Q S V+ + ++ L++DGG + L ST+V++ K + Sbjct: 123 TSANISSQESTLTVEE--FRDLWPKLSLVVDGGPIGEVSSPECRLGSTVVDLSVPGKFIV 180 Query: 192 LRPGG 196 +R G Sbjct: 181 IRDGC 185 >gi|282878540|ref|ZP_06287321.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella buccalis ATCC 35310] gi|281299331|gb|EFA91719.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella buccalis ATCC 35310] Length = 189 Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats. Identities = 47/192 (24%), Positives = 88/192 (45%), Gaps = 8/192 (4%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 +T ++ A E + G I PT+TV+G+ D+ N A+ ++Y+IKKR LIC V Sbjct: 1 MTIQEDIKNAIEVMKQGGVILYPTDTVWGIGCDATNAEAVAKVYKIKKRDDSKALICLVD 60 Query: 66 DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GF 123 + ++++ V ++ L + P T++LD ++ P A + R+ F Sbjct: 61 SDARLQRYVRQVPNVAWDLLDVA-VKPTTIILD--GAINLAPNLIAEDGSIALRITKEPF 117 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--GLESTIV 181 + +L + L SAN SG+ + N +S I + + + S+I+ Sbjct: 118 SHELCYRFQKALVSTSANVSGEPAAANYCD-ISQEILDAVDYVCHSRRQEHKPHTPSSII 176 Query: 182 NVQCEKKVRILR 193 + + +V I+R Sbjct: 177 KLAEDGEVTIIR 188 >gi|332977635|gb|EGK14403.1| Sua5/YciO/YrdC/YwlC family protein [Psychrobacter sp. 1501(2011)] Length = 207 Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats. Identities = 45/207 (21%), Positives = 81/207 (39%), Gaps = 8/207 (3%) Query: 1 MQIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56 MQ + I N + + + L+ I PT+T Y + AI +L I++ Sbjct: 1 MQTLYIHPENPQPRLISQVVDALNRDQLIIYPTDTSYAFGCKIGSKEAIEKLRLIRQLDD 60 Query: 57 MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 + D+S + +A+VD L K P P+T +LD LS KT Sbjct: 61 RHQFTLLCRDLSEIATYATVDNQQFKLLKASTPSPITFILDATKDVP-KKLSHPKKKTIG 119 Query: 117 FRVPCGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 RVP + +++ G P+ S + + + I ++I+ G+ Sbjct: 120 IRVPSNPISQMILDAMGEPILTSSLILPDMQLALDDPFDIEDKLGNNIDVMINAGVLTTK 179 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETL 202 L +TI+++ ++R G + L Sbjct: 180 L-TTIIDMTVS-PPELIRQGAGDASLL 204 >gi|282899761|ref|ZP_06307724.1| Sua5/YciO/YrdC/YwlC [Cylindrospermopsis raciborskii CS-505] gi|281195376|gb|EFA70310.1| Sua5/YciO/YrdC/YwlC [Cylindrospermopsis raciborskii CS-505] Length = 217 Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats. Identities = 53/219 (24%), Positives = 88/219 (40%), Gaps = 18/219 (8%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 +I+ I N + L G + PT+TVY + D +A+ R+ +IK+ Sbjct: 3 RILEIHPDNPQNRRIEDIRLALSGGAVMLYPTDTVYAIGCDLNAKSAVERVKKIKRLAND 62 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLST-ANLKTAC 116 PL +S V +A V ++ + K PGP T +L +T + L KT Sbjct: 63 KPLTFLCPSLSRVATYAFVSDIAYRIMKSLIPGPYTFLLP--ATKLVPRLVQNPKRKTTG 120 Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQIS--------ITNVKHILSSSICKEIPLII 167 RVP L+E+ G+P+ SA+ I K L + + +II Sbjct: 121 IRVPNHHLCLALLESLGNPIISTSAHLPLHDMDDLNVDIDIHPSKMDLFDRLDSLVDIII 180 Query: 168 DGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAI 206 D G STI+++ + + + G+ E + I Sbjct: 181 DTGEEPKNQVSTILDLTDNQPIITRK--GMGWEAVAAWI 217 >gi|218195427|gb|EEC77854.1| hypothetical protein OsI_17110 [Oryza sativa Indica Group] Length = 408 Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats. Identities = 46/186 (24%), Positives = 76/186 (40%), Gaps = 6/186 (3%) Query: 21 AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80 G +A+PT++ Y L + A+ RL I++ + L D+S V +A VD Sbjct: 223 RGAVLAVPTDSSYALVCQLDDKDAVDRLRRIRQVDEKHHLTLLCRDLSEVSNYARVDNRQ 282 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETY-GHPLAIPS 139 L K PGP T +LD +S KT RVP +L+ G PL + Sbjct: 283 YRLVKQATPGPYTFILDATKEVP-RRVSHPQRKTIGLRVPDRKGLQLLLELHGAPLLATT 341 Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ---CEKKVRILRPGG 196 G+ N + + +I ++D G + +T+V++ R++R G Sbjct: 342 LIPPGETEPMNDPSEIRARFEHQIDAVVDAGACPL-EPTTVVDLTDMATGGDPRVVREGR 400 Query: 197 LEIETL 202 + L Sbjct: 401 GPLSAL 406 >gi|56416667|ref|YP_153741.1| hypothetical protein AM436 [Anaplasma marginale str. St. Maries] gi|56387899|gb|AAV86486.1| hypothetical protein AM436 [Anaplasma marginale str. St. Maries] Length = 197 Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats. Identities = 47/181 (25%), Positives = 88/181 (48%), Gaps = 4/181 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++ E L + PT+T+Y LA + + +++RLYEIK+R P+ ++ ++ ++ Sbjct: 1 MQRVVEALRKEQIVCFPTDTLYALACSALSANSVQRLYEIKRRQYHKPIPILLNSLAAIR 60 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 K AS+ + + PGP+T V+ L T + T R+P + ++E Sbjct: 61 KFASLKDEDWGIIERLSPGPVTFVVPLHDTQSLPGEFF--RGTVGVRIPNHAMARTILEE 118 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 +G P+A SAN SG + I + +++ + G+ ST+ +VQ K +R Sbjct: 119 FGGPVAATSANLSGMPGARRAME-IPQEIRDCVSELMEDDSAVGGMCSTVFDVQSRKVLR 177 Query: 191 I 191 I Sbjct: 178 I 178 >gi|255690473|ref|ZP_05414148.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides finegoldii DSM 17565] gi|260623922|gb|EEX46793.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides finegoldii DSM 17565] Length = 187 Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats. Identities = 47/189 (24%), Positives = 86/189 (45%), Gaps = 8/189 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 ++KAC+ ++ G I PT+TV+G+ D+ N A+RR+YEIKKR ++ V Sbjct: 3 EDIKKACQVMNEGGVILYPTDTVWGIGCDATNEEAVRRVYEIKKRADSKAMLVLVDSPVK 62 Query: 70 VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 V + V ++ L ++ PLT++ ++ A + RV F+++L Sbjct: 63 VDFYVQDVPAVAWDLIEVA-DKPLTIIYS--GARNLATNLLAEDGSVGIRVTNEEFSQRL 119 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQC 185 + + + SAN SGQ N +S I + I+ + S+I+ + Sbjct: 120 CQQFRKAIVSTSANVSGQPGAANFSE-ISDEIKSAVDYIVGFRQEDLSRPKPSSIIKLDK 178 Query: 186 EKKVRILRP 194 ++I+R Sbjct: 179 GGVIKIIRE 187 >gi|256820498|ref|YP_003141777.1| SUA5/yciO/yrdC domain-containing protein [Capnocytophaga ochracea DSM 7271] gi|256582081|gb|ACU93216.1| SUA5/yciO/yrdC domain protein [Capnocytophaga ochracea DSM 7271] Length = 185 Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats. Identities = 46/180 (25%), Positives = 84/180 (46%), Gaps = 6/180 (3%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 E L AG I PT+TV+GL D+ NP A+ ++++IK+R LI VSD M++ + + Sbjct: 9 EILKAGKVILYPTDTVWGLGCDATNPEAVAKIFQIKQRSESKSLIILVSDTEMLQHYVTD 68 Query: 77 DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPL 135 P + P T++ + A T RV F +++I +G P+ Sbjct: 69 IPPKVLTYLQTLQEPTTIIYSHP--LHLAKNVIAADNTVAIRVVQDVFCQQMIADFGKPI 126 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDG--GISKIGLESTIVNVQCEKKVRILR 193 SAN SG+ + +++ I + ++ ++I S ++ + +++ILR Sbjct: 127 VSTSANISGEPTPL-YYQLINPQIIAQCDYVVPYRQDDTQIKNPSRLIRFDTDGEIQILR 185 >gi|218128562|ref|ZP_03457366.1| hypothetical protein BACEGG_00132 [Bacteroides eggerthii DSM 20697] gi|317475623|ref|ZP_07934884.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides eggerthii 1_2_48FAA] gi|217989286|gb|EEC55600.1| hypothetical protein BACEGG_00132 [Bacteroides eggerthii DSM 20697] gi|316908193|gb|EFV29886.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides eggerthii 1_2_48FAA] Length = 187 Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats. Identities = 46/189 (24%), Positives = 85/189 (44%), Gaps = 8/189 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 ++KAC+ + G I PT+T++G+ D+ N A+RR+YEIK+R ++ V Sbjct: 3 EDIKKACQVMREGGVILYPTDTIWGIGCDATNEDAVRRVYEIKQRQDSKAMLVLVDSSVK 62 Query: 70 VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 V + V ++ L PLT++ ++ A + RV F+K+L Sbjct: 63 VDFYVQDVPEVAWDLID-LADKPLTIIYS--GARNLAANLLAEDGSVGIRVTNEDFSKRL 119 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQC 185 + + + SAN SGQ S N +S + + I+ ++ S+I+ + Sbjct: 120 CQQFRKAVVSTSANISGQPSPRNFSE-ISEEVKSAVDYIVGYRQEEMSNPKPSSIIKLDK 178 Query: 186 EKKVRILRP 194 ++I+R Sbjct: 179 GGVIKIIRE 187 >gi|197287104|ref|YP_002152976.1| ribosome maturation factor [Proteus mirabilis HI4320] gi|194684591|emb|CAR46453.1| putative RNA-binding protein [Proteus mirabilis HI4320] Length = 189 Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats. Identities = 49/180 (27%), Positives = 72/180 (40%), Gaps = 8/180 (4%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 E L IA PTE V+G+ D + +A+ L E+K+R LI + +K + Sbjct: 12 IIEALQNNQVIAYPTEAVFGVGCDPDSESAVMALLELKQRAIEKGLILIADNYEQLKPYI 71 Query: 75 SVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 + L+ WPGP+T V+ STT T + RV K L Sbjct: 72 DDNALTQEQRERMFASWPGPITWVIPAKSTT--PKWLTGRFSSLAVRVTDHPIVKALCVA 129 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 YG PL SAN SG +V+ + I I++G + S I + + R Sbjct: 130 YGKPLVSTSANLSGLPPCRSVEEV-QEQFRNRI-AIVNGEVGGRKNPSEIRDALTGELYR 187 >gi|320540532|ref|ZP_08040182.1| conserved protein [Serratia symbiotica str. Tucson] gi|320029463|gb|EFW11492.1| conserved protein [Serratia symbiotica str. Tucson] Length = 207 Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats. Identities = 40/177 (22%), Positives = 71/177 (40%), Gaps = 3/177 (1%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + + L G I PT++ Y L + TA+ R+ I++ + + D+S Sbjct: 14 PRLINQTMDVLRKGGVIVYPTDSGYALGCMLEDKTAMARICHIRQLGSNHNFTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD ++ HL K PG T +L L KT RVP L Sbjct: 74 ELSSYAYVDNIAYHLIKNNTPGNYTFILKATKEVP-RRLMNDKRKTIGLRVPSNPIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + P+ + G + +S + K++ L+I GG +T+V++ Sbjct: 133 LAALNEPMMSTTLMLPGNDFAESDPQEISDHLGKQVDLVIHGGFLGQ-QPTTVVDLT 188 >gi|160872342|ref|ZP_02062474.1| Sua5/YciO/YrdC/YwlC family protein [Rickettsiella grylli] gi|159121141|gb|EDP46479.1| Sua5/YciO/YrdC/YwlC family protein [Rickettsiella grylli] Length = 208 Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats. Identities = 52/208 (25%), Positives = 82/208 (39%), Gaps = 10/208 (4%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 Q + I N +R A + I PT++ Y L N I+R+ +I++ Sbjct: 3 QFLKIHKENPQLHLIRMAANIVMKEGVIVYPTDSAYALGCQLTNKKGIQRIKQIRQLKDQ 62 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 + L DIS + A ++ L K PGP T +L S L A KT Sbjct: 63 HSLTLLCRDISEMAHFAQLETPIFRLIKANTPGPYTFLLPATSHVP-RYLIHAKRKTIGI 121 Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P L+E PL + + + K + L+IDGG GL Sbjct: 122 RIPDNKIVHALLEMNDQPLINTTLILPDSDLPLLEPEAIRDILGKRVDLVIDGGFC--GL 179 Query: 177 E-STIVNVQCEKKVRILRPGGLEIETLK 203 E +T++++ I+R G EI+ + Sbjct: 180 ELTTVIDLSGHIP-HIIRCGKGEIKPFQ 206 >gi|289810569|ref|ZP_06541198.1| hypothetical protein Salmonellaentericaenterica_41842 [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 174 Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats. Identities = 41/169 (24%), Positives = 70/169 (41%), Gaps = 4/169 (2%) Query: 28 PTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLF 87 PT++ Y L + A+ R+ I+ P + D+S + ++ VD ++ L K Sbjct: 1 PTDSGYALGCKIEDKGAMERICRIRHLPDGHNFTLMCRDLSELSTYSYVDNVAFRLMKNN 60 Query: 88 WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQI 146 PG T +L L KT RVP L++T G P+ S G Sbjct: 61 TPGNYTFILKGTKEVP-RRLLQEKRKTIGLRVPSNPIALALLDTLGEPMLSTSLMLPGSD 119 Query: 147 SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 + + + K++ LII GG +T++++ + V +LR G Sbjct: 120 FTESDPEEIKDRLEKQVDLIIHGGYLGQ-QPTTVIDLTNDSPV-VLREG 166 >gi|157374827|ref|YP_001473427.1| SUA5/YciO/YrdC/YwlC family protein [Shewanella sediminis HAW-EB3] gi|157317201|gb|ABV36299.1| SUA5/YciO/YrdC/YwlC family protein [Shewanella sediminis HAW-EB3] Length = 206 Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats. Identities = 41/192 (21%), Positives = 74/192 (38%), Gaps = 4/192 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A + G I PT++ Y L A+ R+ I++ + D S Sbjct: 14 ARLINQAVNAIKNGGVIVYPTDSGYALGCLLGEKDAMARIARIRQIDNDHNFSLMCRDQS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKL 127 + +A VD + + K PGP T + L KT RVP L Sbjct: 74 ELATYARVDNQAYRVLKHNTPGPYTFIFKASKEVP-KRLQNPKKKTIGIRVPDNVIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E PL S G+ + + + ++ +II GG +T++++ E Sbjct: 133 LEALDAPLMSTSLILPGEEFTESDPEHIRDILEHQVDVIIHGGYLGE-KPTTVIDM-SEG 190 Query: 188 KVRILRPGGLEI 199 + +LR G ++ Sbjct: 191 DIEVLREGAGDV 202 >gi|260220460|emb|CBA28020.1| Uncharacterized protein HI1198 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 207 Score = 150 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 45/189 (23%), Positives = 80/189 (42%), Gaps = 4/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 L++A L+ G +A+PT++ Y L + A +L I+ + L D+S Sbjct: 14 PRLLKQAIALLEKGGILAVPTDSSYALVCHLDDKAAADKLRSIRGVDDKHHLTLLCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD L K PG T +L+ +S + KT RVP ++L Sbjct: 74 ELANYARVDNRQYRLLKAATPGAYTFILEASKEVP-RRVSHPSRKTIGLRVPEHQVLQEL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + YG L + G+ N + +I +ID G + +T++++ E+ Sbjct: 133 LAHYGSALLATTLIAKGESEPLNDAQDIRERYEHQIAAVIDAGACAL-EPTTVIDLTGEE 191 Query: 188 KVRILRPGG 196 ++R GG Sbjct: 192 P-ELIRQGG 199 >gi|119943865|ref|YP_941545.1| ribosome maturation factor [Psychromonas ingrahamii 37] gi|212288218|sp|A1SR31|RIMN_PSYIN RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|119862469|gb|ABM01946.1| translation factor SUA5 [Psychromonas ingrahamii 37] Length = 191 Score = 150 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 45/187 (24%), Positives = 86/187 (45%), Gaps = 7/187 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + L A + L + IA PTE+V+GL D AI+++ +K+RPA LI + I Sbjct: 7 QSELNDALKILKSQGVIAYPTESVFGLGCDPDCEAAIQKILLLKQRPAYKGLILIAASIE 66 Query: 69 MVKKHASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 ++K+A L + K WPGP+T ++ ++ L + + ++ RV Sbjct: 67 QLEKYADFSLLTAAQLTVIKKTWPGPITWIVPSQK--NLSKLISGDFESVAVRVTAHPIV 124 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICK-EIPLIIDGGISKIGLESTIVNV 183 +++ + P+ SAN S + + + + + L+ID +S + + I + Sbjct: 125 RQICLAFDKPIISTSANLSSLEAALSSQQVNKMFKSNTLLNLVIDAPVSGLSTPTQIFHA 184 Query: 184 QCEKKVR 190 K++R Sbjct: 185 STGKRLR 191 >gi|300112979|ref|YP_003759554.1| SUA5/yciO/yrdC domain-containing protein [Nitrosococcus watsonii C-113] gi|299538916|gb|ADJ27233.1| SUA5/yciO/yrdC domain protein [Nitrosococcus watsonii C-113] Length = 185 Score = 150 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 47/181 (25%), Positives = 75/181 (41%), Gaps = 5/181 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +R A + G IA PTE V+GL D R AI R+ ++K R I +D + ++ Sbjct: 8 VRFAARIIHRGGVIAYPTEGVFGLGCDPRQKAAIERILQLKGRSVHKGFILIAADFTQLQ 67 Query: 72 KH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIE 129 + + + + WPGP+T +L + D+ P T RV L + Sbjct: 68 PYLLPLTASTRSRLEETWPGPVTWLLP--ARGDVPPWLRGRHDTLAVRVTAYPLAACLCQ 125 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 T GH L SANR+G+ + S + I+ G S I + +++ Sbjct: 126 TAGHALVSTSANRAGRPPAQTTLQV-RRSFGASLDYILPGITGGRTGPSEIRDGSTGRRL 184 Query: 190 R 190 R Sbjct: 185 R 185 >gi|126662056|ref|ZP_01733055.1| Sua5/YciO/YrdC/YwlC family protein [Flavobacteria bacterium BAL38] gi|126625435|gb|EAZ96124.1| Sua5/YciO/YrdC/YwlC family protein [Flavobacteria bacterium BAL38] Length = 188 Score = 150 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 49/195 (25%), Positives = 84/195 (43%), Gaps = 10/195 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+I + + A E + G I PT+TV+G+ D+ N AI+++Y +K+R + Sbjct: 1 MEI-----NTEVHNAFEIIKNGGIILYPTDTVWGIGCDATNEDAIKKIYALKQREESKSM 55 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV- 119 I ++ M+ P P TL+LD ++ A T R+ Sbjct: 56 IVLLNGERMMYNVFKDIPEVAWQILDLSERPTTLILD--KPRNVAKNIIAEDNTLAVRMV 113 Query: 120 PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL-ES 178 F KL+E PL SAN SG + K I I + +++ K+ S Sbjct: 114 TEPFCFKLMERMKKPLVSTSANVSGMFTPKTFKEITPEIIKG-VDYVVNLHHDKVCKNPS 172 Query: 179 TIVNVQCEKKVRILR 193 TI+ + + +V+++R Sbjct: 173 TIIKLGLDSQVKVIR 187 >gi|93005341|ref|YP_579778.1| Sua5/YciO/YrdC/YwlC [Psychrobacter cryohalolentis K5] gi|92393019|gb|ABE74294.1| translation factor SUA5 [Psychrobacter cryohalolentis K5] Length = 205 Score = 150 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 47/207 (22%), Positives = 84/207 (40%), Gaps = 8/207 (3%) Query: 1 MQIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56 MQ+ I N + + + L I PT+T Y A+ +L +I+ Sbjct: 1 MQVFYIHPENPQPRLIEQVADLLRKDQLIIYPTDTSYAFGCRLGAKDALEKLKQIRALDD 60 Query: 57 MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 + D+S + +A+VD + K P P+T +L+ L+ A KT Sbjct: 61 KHQFTLLCRDLSEIANYAAVDNVQFKQLKSHTPAPITFILNATKDVP-KKLAHAKKKTIG 119 Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 RVP + L+E P+ S + I + + + +I +I+ GI Sbjct: 120 IRVPSNAIAQALLEAMDEPILTSSLILPNRDDILDDPFEIEELLGNQIDGLINAGIKTTK 179 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETL 202 L +TIV++ + I+R G ++ +L Sbjct: 180 L-TTIVDMTSSQP-EIIRQGAADVSSL 204 >gi|53715189|ref|YP_101181.1| putative translation factor [Bacteroides fragilis YCH46] gi|60683124|ref|YP_213268.1| hypothetical protein BF3675 [Bacteroides fragilis NCTC 9343] gi|265767017|ref|ZP_06094846.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|52218054|dbj|BAD50647.1| putative translation factor [Bacteroides fragilis YCH46] gi|60494558|emb|CAH09357.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343] gi|263253394|gb|EEZ24870.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|301164636|emb|CBW24195.1| conserved hypothetical protein [Bacteroides fragilis 638R] Length = 187 Score = 150 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 46/189 (24%), Positives = 87/189 (46%), Gaps = 8/189 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 ++KAC+ + G I PT+TV+G+ D+ N A+RR+YEIK+R ++ V Sbjct: 3 EDIKKACQVMSEGGVILYPTDTVWGIGCDATNEDAVRRVYEIKRRADSKAMLVLVDSPVK 62 Query: 70 VKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 V+ + P ++ L ++ PLT++ ++ A + RV F+++L Sbjct: 63 VEFYVQDVPSVAWDLIEVA-DKPLTIIYS--GARNLASNLLAEDGSVGIRVTNEAFSRRL 119 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQC 185 + + + SAN SGQ N +S I + I++ + S+I+ + Sbjct: 120 CQQFRKAIVSTSANVSGQPGAANFNE-ISEEIKSSVDYIVNFRQDDMSRPKPSSIIKLDK 178 Query: 186 EKKVRILRP 194 ++I+R Sbjct: 179 GGVIKIIRE 187 >gi|329957244|ref|ZP_08297764.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides clarus YIT 12056] gi|328522957|gb|EGF50060.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides clarus YIT 12056] Length = 187 Score = 150 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 48/189 (25%), Positives = 86/189 (45%), Gaps = 8/189 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 ++KAC+ + G I PT+TV+G+ D+ N A+RR+YEIK+R ++ V Sbjct: 3 EDIKKACQVMREGGVILYPTDTVWGIGCDATNEDAVRRVYEIKQRQDSKAMLVLVDSSVK 62 Query: 70 VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 V + V ++ L PLT++ ++ A +A RV F+K+L Sbjct: 63 VDFYVRDVPEVAWDLID-LADKPLTIIYS--GARNLAANLLAEDGSAGIRVTNEEFSKRL 119 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQC 185 + + + SAN SGQ S N +S + + I+ ++ S+I+ + Sbjct: 120 CQQFRKAIVSTSANISGQPSPKNFSE-ISEEVKSAVDYIVGYRQEEMSNPKPSSIIKLGK 178 Query: 186 EKKVRILRP 194 ++I+R Sbjct: 179 GGVIKIIRE 187 >gi|314966701|gb|EFT10800.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL082PA2] gi|315093382|gb|EFT65358.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL060PA1] gi|315103362|gb|EFT75338.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL050PA2] gi|327327527|gb|EGE69303.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL103PA1] Length = 222 Score = 150 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 39/190 (20%), Positives = 74/190 (38%), Gaps = 5/190 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +L + + L G IA PT+T Y N A+ R+ ++++ + +S + Sbjct: 30 QRSLNQVVDILHHGGLIAYPTDTGYAFGARLGNKDAVDRIRKLRQLSDKHHFTLIMSQFA 89 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCGF-TKK 126 V ++ +D PG T +L+ +T D+ + KT RVP Sbjct: 90 QVGQYVQMDNWVFRAVSAAVPGRYTFILN--ATRDVPKVMLHPRKKTVGVRVPEHVTALA 147 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+E P+ + GQ + + I ++ ++D G + +T+V+ Sbjct: 148 LLEALNEPIVSSTLILPGQDTPMVDGWQVQDEIGDQLDAVLDSGDCGV-EPTTVVDFTSG 206 Query: 187 KKVRILRPGG 196 + V R G Sbjct: 207 EAVITRRGAG 216 >gi|229494439|ref|ZP_04388202.1| Sua5/YciO/YrdC/YwlC family protein [Rhodococcus erythropolis SK121] gi|229318801|gb|EEN84659.1| Sua5/YciO/YrdC/YwlC family protein [Rhodococcus erythropolis SK121] Length = 206 Score = 150 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 38/196 (19%), Positives = 70/196 (35%), Gaps = 4/196 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 A+ + E L IA PT++ Y L N + R+ EI+ + + +D + Sbjct: 14 PRAISQIVEMLRNDAVIAYPTDSCYALGARMDNHSGTDRIREIRHLRSDHHFTLVCADFA 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + V + K PG T +L L+ A KT R+P + L Sbjct: 74 QLGHFVHVTNSAFRAVKAATPGQYTFILPATKEVP-RRLAHAKKKTVGVRIPSHPVVRAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ G P+ + G + + ++ +ID G +T+V+ Sbjct: 133 LQELGEPILSSTLLLPGAEEPMTDGWQIKEELDHQLDAVIDSGDCGT-EPTTVVDYSSGV 191 Query: 188 KVRILRPGGLEIETLK 203 I+R G + + Sbjct: 192 P-EIVRVGAGDPSRFE 206 >gi|322368033|ref|ZP_08042602.1| Sua5/YciO/YrdC/YwlC family protein [Haladaptatus paucihalophilus DX253] gi|320552049|gb|EFW93694.1| Sua5/YciO/YrdC/YwlC family protein [Haladaptatus paucihalophilus DX253] Length = 204 Score = 150 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 52/201 (25%), Positives = 90/201 (44%), Gaps = 8/201 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + L +A + G + PTETVYGL D+ +PTAI R+++ K R P+ V D+ Sbjct: 12 EDELERAATAMRDGHLVVYPTETVYGLGADALDPTAIERVFDAKGRARDKPISLAVPDVE 71 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128 + + L + F PGP+T++ + + + T R+P + Sbjct: 72 TARNYVRPTERELAFMEAFLPGPVTVLCEKRDI--VPDVLTGGRSRVGVRIPDQPVALSL 129 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 + P+ SAN SG+ S+T + L I +IDGG + T+VNV+ + Sbjct: 130 LRHVAPITSTSANVSGRGSVTCIDD-LDDEIRDAAECVIDGGETGGTGS-TVVNVKQGEI 187 Query: 189 VRILRPGGLEIETLKRAISVE 209 +R G + ++ ++ E Sbjct: 188 LR----RGENADEIEAWLAAE 204 >gi|294141571|ref|YP_003557549.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella violacea DSS12] gi|293328040|dbj|BAJ02771.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella violacea DSS12] Length = 206 Score = 150 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 41/192 (21%), Positives = 73/192 (38%), Gaps = 4/192 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A L G I PT++ Y L A+ R+ I++ + D S Sbjct: 14 PRLINQAVNALKNGGVIVYPTDSGYALGCLLGEKDAMSRMARIRQIDNDHNFSLMCRDQS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKL 127 + +A VD + + K PGP T + L KT RVP L Sbjct: 74 ELSAYAKVDNQAYRVLKHHTPGPYTFIFKASKEVP-KRLQNPKKKTIGIRVPDNVIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E PL S G+ + + + ++ +II GG +T++++ + Sbjct: 133 LEALDAPLMSTSLILPGEEFTESDPEHIRDILEHQVDVIIHGGYLGE-KPTTVIDM-SDG 190 Query: 188 KVRILRPGGLEI 199 + ++R G +I Sbjct: 191 DIEVIREGAGDI 202 >gi|313837067|gb|EFS74781.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL037PA2] gi|314971840|gb|EFT15938.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL037PA3] Length = 206 Score = 150 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 40/189 (21%), Positives = 74/189 (39%), Gaps = 5/189 (2%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +L + + L G IA PT+T Y N A+ R+ ++++ + +S + Sbjct: 15 RSLNQVVDILHGGGLIAYPTDTGYAFGARLGNKDALDRIRKLRQLSDKHHFTLVMSRFAQ 74 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCGF-TKKL 127 V ++ +D + PG T +L +T D+ + KT RVP L Sbjct: 75 VGQYVQMDNWVFRAVRAAVPGRYTFIL--KATRDVPKVMLHPRKKTVGIRVPEHVTALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E P+ + GQ + + I ++ ++D G + +T+V+ K Sbjct: 133 LEALNEPIVSSTLILPGQDTPMVDGWQVQDEIGDQLDAVLDSGDCGV-EPTTVVDFTSGK 191 Query: 188 KVRILRPGG 196 V R G Sbjct: 192 PVITRRGAG 200 >gi|222475032|ref|YP_002563447.1| hypothetical protein AMF_320 [Anaplasma marginale str. Florida] gi|255003012|ref|ZP_05277976.1| hypothetical protein AmarPR_01750 [Anaplasma marginale str. Puerto Rico] gi|269958915|ref|YP_003328704.1| putative translation factor [Anaplasma centrale str. Israel] gi|222419168|gb|ACM49191.1| Conserved hypothetical protein [Anaplasma marginale str. Florida] gi|269848746|gb|ACZ49390.1| putative translation factor [Anaplasma centrale str. Israel] Length = 197 Score = 150 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 47/181 (25%), Positives = 88/181 (48%), Gaps = 4/181 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++ E L + PT+T+Y LA + + +++RLYEIK+R P+ ++ ++ ++ Sbjct: 1 MQRVVEALRKEQIVCFPTDTLYALACSALSANSVQRLYEIKRRQYHKPIPILLNSLAAIR 60 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 K AS+ + + PGP+T V+ L T + T R+P + ++E Sbjct: 61 KFASLKDEDWGIIERLSPGPVTFVVPLHDTQSLPGEFF--RGTVGVRIPDHAMARTILEE 118 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 +G P+A SAN SG + I + +++ + G+ ST+ +VQ K +R Sbjct: 119 FGGPVAATSANLSGMPGARRAME-IPQEIRDCVSELMEDDSAVGGMCSTVFDVQSRKVLR 177 Query: 191 I 191 I Sbjct: 178 I 178 >gi|332829168|gb|EGK01832.1| Sua5/YciO/YrdC/YwlC family protein [Dysgonomonas gadei ATCC BAA-286] Length = 187 Score = 150 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 51/189 (26%), Positives = 91/189 (48%), Gaps = 8/189 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 ++KA E L AG I PT+T++G+ D+ N A+R++YE+KKR LI V + Sbjct: 3 EDIKKAFEVLVAGGLILYPTDTIWGIGCDATNEEAVRKVYELKKRVDSKALITLVDNPVK 62 Query: 70 VKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 + + V ++ L ++ PLT++ D ++ P A + RV F+++L Sbjct: 63 LDFYIDGVPEIAWDLIEVS-DKPLTIIYDN--ARNVAPNLIAEDGSLAIRVTKESFSQEL 119 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--GLESTIVNVQC 185 + + L SAN SG+ S N +S I + I+ + I S+I+ + Sbjct: 120 CKRFRKALVSTSANISGEPSPANFSE-ISDEIKNGVDYIVQYRQNDISKSKASSIIKLGK 178 Query: 186 EKKVRILRP 194 +V+++R Sbjct: 179 SGEVKVIRE 187 >gi|21244532|ref|NP_644114.1| hypothetical protein XAC3808 [Xanthomonas axonopodis pv. citri str. 306] gi|81798965|sp|Q8PG13|RIMN_XANAC RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|21110204|gb|AAM38650.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] Length = 187 Score = 150 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 51/190 (26%), Positives = 81/190 (42%), Gaps = 7/190 (3%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 +TD+ L +A L G IA PTE V+GL D R A+ RL EIK+RP +I S Sbjct: 1 MTDTLDLDRAVAALTQGGVIAYPTEAVWGLGCDPRQRAAVMRLLEIKRRPVEKGVIVVAS 60 Query: 66 DISMVKKHASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 + +++ +D P WPGP T +L + T T R+ Sbjct: 61 SVDVLRDWVDIDALEPARRRDVLTSWPGPHTWILPI--TDRAPRWVTGEHDGLAVRISAH 118 Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 L +G PL SAN +G+ + + L ++ I ++DG + + I Sbjct: 119 PVVAALCGAWGAPLVSTSANLAGEPPARS-RAALDPALLATIDGVVDGETGALAQPTQIR 177 Query: 182 NVQCEKKVRI 191 + + + +R Sbjct: 178 DARSGQILRD 187 >gi|227874645|ref|ZP_03992808.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus mulieris ATCC 35243] gi|227844854|gb|EEJ55000.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus mulieris ATCC 35243] Length = 224 Score = 150 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 56/226 (24%), Positives = 88/226 (38%), Gaps = 22/226 (9%) Query: 1 MQIMSITDSNA------LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR 54 M+I + + L + + + IPT+TVYG+A P A+ RL K R Sbjct: 1 MEIFRVDPESGALSESELAACEAAVKSSELLVIPTDTVYGIASVPFEPAAVERLQGAKGR 60 Query: 55 PAMNPLICHVSDISMVKKH----------ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI 104 P VS ++ + A + + LA FWPGPLT++ Sbjct: 61 GEDFPPPVLVSGVAALDSLLERPAIFGAPAPLYEAARRLATAFWPGPLTIIARANPRLGW 120 Query: 105 HPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP 164 + T T R P I PLA+ SANR G T++ ++ ++ Sbjct: 121 NLGKTGG--TIALRQPNHPVALQILEATGPLAVTSANRHGAPPATDISAA-TAYFWDKVA 177 Query: 165 LIIDGGISKIGLESTIVNVQ---CEKKVRILRPGGLEIETLKRAIS 207 + +D G S G STIVN+ + I R G + ++ + Sbjct: 178 VYVDAGESPSGQPSTIVNLTKLDAAGQPVIARAGAITAAEIRAVLG 223 >gi|332675495|gb|AEE72311.1| protein YciO [Propionibacterium acnes 266] Length = 213 Score = 150 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 39/190 (20%), Positives = 74/190 (38%), Gaps = 5/190 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +L + + L G IA PT+T Y N A+ R+ ++++ + +S + Sbjct: 21 QRSLNQIVDILHHGGLIAYPTDTGYAFGARLGNKDAVDRIRKLRQLSDKHHFTLVMSQFA 80 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCGF-TKK 126 V ++ +D PG T +L+ +T D+ + KT RVP Sbjct: 81 QVGQYVQMDNWVFRAVSAAVPGRYTFILN--ATRDVPKVMLHPRKKTVGVRVPEHVTALA 138 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+E P+ + GQ + + I ++ ++D G + +T+V+ Sbjct: 139 LLEALNEPIVSSTLILPGQDTPMVDGWQVQDEIGDQLDAVLDSGDCGV-EPTTVVDFTSG 197 Query: 187 KKVRILRPGG 196 + V R G Sbjct: 198 EAVVTRRGAG 207 >gi|117919970|ref|YP_869162.1| translation factor SUA5 [Shewanella sp. ANA-3] gi|117612302|gb|ABK47756.1| translation factor SUA5 [Shewanella sp. ANA-3] Length = 206 Score = 150 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 40/189 (21%), Positives = 72/189 (38%), Gaps = 4/189 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A L +G I PT++ Y L A+ R+ I++ + D+S + Sbjct: 17 ISQAVAVLKSGGVIVYPTDSGYALGCMIGEKDAMTRITRIRQIEHDHNFSLMCRDLSELA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIET 130 +A VD + + K PGP T + L KT RVP L+E Sbjct: 77 TYAKVDNQAYRILKSCTPGPYTFIFKASKEVP-RRLQNDKKKTIGIRVPDNIIALALLEA 135 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 PL S + + + ++ +II GG +T++++ + Sbjct: 136 LDAPLMSTSLVMPNSDFAESDPEHIRDLLEHQVDVIIHGGYLGE-KPTTVIDMSEDG-FE 193 Query: 191 ILRPGGLEI 199 +LR G ++ Sbjct: 194 VLREGAGDV 202 >gi|226304635|ref|YP_002764593.1| hypothetical protein RER_11460 [Rhodococcus erythropolis PR4] gi|226183750|dbj|BAH31854.1| conserved hypothetical protein [Rhodococcus erythropolis PR4] Length = 206 Score = 150 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 38/196 (19%), Positives = 70/196 (35%), Gaps = 4/196 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 A+ + E L IA PT++ Y L N + R+ EI+ + + +D + Sbjct: 14 PRAISQIVEMLRNDAVIAYPTDSCYALGARMDNHSGTDRIREIRHLRSDHHFTLVCADFA 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + V + K PG T +L L+ A KT R+P + L Sbjct: 74 QLGHFVHVTNSAFRAVKAATPGQYTFILPATKEVP-RRLAHAKKKTVGVRIPSHPVVRAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ G P+ + G + + ++ +ID G +T+V+ Sbjct: 133 LQELGEPILSSTLLLPGAEEPMTDGWQIKEELDHQLDAVIDSGDCGT-EPTTVVDYSSGA 191 Query: 188 KVRILRPGGLEIETLK 203 I+R G + + Sbjct: 192 P-EIVRVGAGDPSRFE 206 >gi|50842570|ref|YP_055797.1| Sua5/YciO/YrdC domain-containing protein [Propionibacterium acnes KPA171202] gi|289425393|ref|ZP_06427170.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes SK187] gi|289426572|ref|ZP_06428312.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes J165] gi|295130652|ref|YP_003581315.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes SK137] gi|50840172|gb|AAT82839.1| protein with Sua5/YciO/YrdC domain [Propionibacterium acnes KPA171202] gi|289154371|gb|EFD03059.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes SK187] gi|289160216|gb|EFD08380.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes J165] gi|291375456|gb|ADD99310.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes SK137] gi|313764393|gb|EFS35757.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL013PA1] gi|313772225|gb|EFS38191.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL074PA1] gi|313801969|gb|EFS43203.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL110PA2] gi|313807580|gb|EFS46067.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL087PA2] gi|313810089|gb|EFS47810.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL083PA1] gi|313812881|gb|EFS50595.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL025PA1] gi|313815930|gb|EFS53644.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL059PA1] gi|313818621|gb|EFS56335.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL046PA2] gi|313820390|gb|EFS58104.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL036PA1] gi|313822806|gb|EFS60520.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL036PA2] gi|313825263|gb|EFS62977.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL063PA1] gi|313827552|gb|EFS65266.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL063PA2] gi|313830420|gb|EFS68134.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL007PA1] gi|313833789|gb|EFS71503.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL056PA1] gi|313838794|gb|EFS76508.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL086PA1] gi|314915384|gb|EFS79215.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL005PA4] gi|314918057|gb|EFS81888.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL050PA1] gi|314920143|gb|EFS83974.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL050PA3] gi|314925277|gb|EFS89108.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL036PA3] gi|314931665|gb|EFS95496.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL067PA1] gi|314955721|gb|EFT00123.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL027PA1] gi|314958120|gb|EFT02223.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL002PA1] gi|314959940|gb|EFT04042.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL002PA2] gi|314962736|gb|EFT06836.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL082PA1] gi|314967896|gb|EFT11995.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL037PA1] gi|314973421|gb|EFT17517.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL053PA1] gi|314976100|gb|EFT20195.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL045PA1] gi|314978510|gb|EFT22604.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL072PA2] gi|314983880|gb|EFT27972.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL005PA1] gi|314988060|gb|EFT32151.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL005PA2] gi|314989869|gb|EFT33960.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL005PA3] gi|315080578|gb|EFT52554.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL078PA1] gi|315084248|gb|EFT56224.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL027PA2] gi|315085593|gb|EFT57569.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL002PA3] gi|315088355|gb|EFT60331.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL072PA1] gi|315095967|gb|EFT67943.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL038PA1] gi|315098597|gb|EFT70573.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL059PA2] gi|315101402|gb|EFT73378.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL046PA1] gi|315105586|gb|EFT77562.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL030PA1] gi|315108618|gb|EFT80594.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL030PA2] gi|327326248|gb|EGE68038.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL096PA2] gi|327331876|gb|EGE73613.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL096PA3] gi|327443078|gb|EGE89732.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL013PA2] gi|327445860|gb|EGE92514.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL043PA2] gi|327448158|gb|EGE94812.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL043PA1] gi|327450721|gb|EGE97375.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL087PA3] gi|327453938|gb|EGF00593.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL083PA2] gi|328753409|gb|EGF67025.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL020PA1] gi|328754140|gb|EGF67756.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL087PA1] gi|328754612|gb|EGF68228.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL025PA2] gi|328760792|gb|EGF74358.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL099PA1] Length = 222 Score = 150 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 39/190 (20%), Positives = 74/190 (38%), Gaps = 5/190 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +L + + L G IA PT+T Y N A+ R+ ++++ + +S + Sbjct: 30 QRSLNQIVDILHHGGLIAYPTDTGYAFGARLGNKDAVDRIRKLRQLSDKHHFTLVMSQFA 89 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCGF-TKK 126 V ++ +D PG T +L+ +T D+ + KT RVP Sbjct: 90 QVGQYVQMDNWVFRAVSAAVPGRYTFILN--ATRDVPKVMLHPRKKTVGVRVPEHVTALA 147 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+E P+ + GQ + + I ++ ++D G + +T+V+ Sbjct: 148 LLEALNEPIVSSTLILPGQDTPMVDGWQVQDEIGDQLDAVLDSGDCGV-EPTTVVDFTSG 206 Query: 187 KKVRILRPGG 196 + V R G Sbjct: 207 EAVVTRRGAG 216 >gi|33600639|ref|NP_888199.1| hypothetical protein BB1654 [Bordetella bronchiseptica RB50] gi|33568239|emb|CAE32151.1| conserved hypothetical protein [Bordetella bronchiseptica RB50] Length = 208 Score = 150 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 76/189 (40%), Gaps = 3/189 (1%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A ++L G +A+PT++ Y + + A L ++ + L D++ Sbjct: 14 PRLIKQAAQWLSDGGLVAVPTDSSYAVVAPLDDKAAADALRRLRGLDERHHLTLLCRDLA 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + A VD L K PGP T +L+ +S + KT RVP L Sbjct: 74 EIGQFARVDNKQYRLLKAATPGPWTFILEATREVP-RRVSHPSRKTIGIRVPAHAVALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL + + N + E+ +ID G +T+V++ + Sbjct: 133 LEQVGAPLLSTTLIPRDEEDALNDPEAIQERYQHELAAVIDAGACPQ-TPTTVVDLTGAE 191 Query: 188 KVRILRPGG 196 + R GG Sbjct: 192 PAVLRRGGG 200 >gi|282895924|ref|ZP_06303964.1| Sua5/YciO/YrdC/YwlC [Raphidiopsis brookii D9] gi|281199169|gb|EFA74038.1| Sua5/YciO/YrdC/YwlC [Raphidiopsis brookii D9] Length = 219 Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 52/221 (23%), Positives = 89/221 (40%), Gaps = 20/221 (9%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 +I+ I N + L G + PT+TVY + D +A+ R+ +IK+ Sbjct: 3 RILEIHPDNPQNRRIEDIRLALSGGAVMLYPTDTVYAIGCDLNAKSAVERVKKIKRLAND 62 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLST-ANLKTAC 116 PL +S V +A V ++ + K PGP T +L +T + L KT Sbjct: 63 KPLTFLCPSLSRVATYAFVSDMAYRIMKSLIPGPYTFLLP--ATKLVPRLVQNPKRKTTG 120 Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQIS----------ITNVKHILSSSICKEIPL 165 RVP L+E+ G+P+ SA+ + K L + + + + Sbjct: 121 IRVPNHHLCLALLESLGNPIISTSAHLPRHDMDDLNVDVDTDMLPSKMDLFNRLGSLVDI 180 Query: 166 IIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAI 206 IID G STI+++ + + + G+ E + I Sbjct: 181 IIDTGEEPKNQVSTILDLTDNQPIITRK--GMGWEAVAAWI 219 >gi|288941781|ref|YP_003444021.1| SUA5/yciO/yrdC domain-containing protein [Allochromatium vinosum DSM 180] gi|288897153|gb|ADC62989.1| SUA5/yciO/yrdC domain protein [Allochromatium vinosum DSM 180] Length = 204 Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 46/182 (25%), Positives = 72/182 (39%), Gaps = 5/182 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 LR A L G +A PTE VYGL D N A+ RL IK+R LI +D ++ Sbjct: 26 LRLAVRCLRQGGVLAYPTEAVYGLGCDPWNGRAVARLLAIKRRSMTKGLILIAADPDQLR 85 Query: 72 KHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 ++P WPGP T +L + T T RV +L Sbjct: 86 PFVEPLEPERQREIHATWPGPNTWLLP--ARVATPAWLTGRFDTLAVRVSAHPLVAELCR 143 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 YG + SAN++ + + + ++ + I+ G + S I + + + + Sbjct: 144 AYGGAIVSTSANQAARPAARTALGV-RLALDEPPDYILAGHCAGSDRPSVIRDGRTGRLI 202 Query: 190 RI 191 R Sbjct: 203 RA 204 >gi|332017466|gb|EGI58189.1| YrdC domain-containing protein, mitochondrial [Acromyrmex echinatior] Length = 263 Score = 150 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 55/203 (27%), Positives = 90/203 (44%), Gaps = 11/203 (5%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 ++ A E L G IA+PT+TVYGLA + + AI+RLYEIK+R PL +S++ Sbjct: 55 RSVAMAVELLQQGKVIAVPTDTVYGLACLAADSHAIQRLYEIKQRDERKPLAICLSNVKE 114 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129 V +D + + K PGP T+ L ++ + T RVP + + Sbjct: 115 VGIWGIIDNIPAGMLKDLLPGPYTICLRRTPA--LNKNLNPGIDTVGIRVPNDKFIRSVA 172 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG------ISKIGLESTIVNV 183 PLA+ SAN S ++S + ++ E+ + + ST+V+V Sbjct: 173 QIVGPLALTSANVSNELSSLHPNE--FRALWPELDGVFHSSTNSKKQTDARRIGSTVVDV 230 Query: 184 QCEKKVRILRPGGLEIETLKRAI 206 I+R G + + R + Sbjct: 231 SKLGCYSIMRRG-ISAHVIIRIL 252 >gi|269977554|ref|ZP_06184521.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus mulieris 28-1] gi|269934157|gb|EEZ90724.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus mulieris 28-1] Length = 224 Score = 150 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 56/226 (24%), Positives = 89/226 (39%), Gaps = 22/226 (9%) Query: 1 MQIMSITDSNA------LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR 54 M+I + + L + + + IPT+TVYG+A P A++RL K R Sbjct: 1 MEIFRVDPESGALSESELAACEAAVKSSELLVIPTDTVYGIASVPFEPAAVQRLQGAKGR 60 Query: 55 PAMNPLICHVSDISMVKKH----------ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI 104 P VS ++ + A + + LA FWPGPLT++ Sbjct: 61 GEDFPPPVLVSGVAALDSLLERPAIFGAPAPLYEAARRLATAFWPGPLTIIARANPRLGW 120 Query: 105 HPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP 164 + T T R P I PLA+ SANR G T++ ++ ++ Sbjct: 121 NLGKTGG--TIALRQPNHPVALQILEATGPLAVTSANRHGAPPATDISAA-TAYFWDKVA 177 Query: 165 LIIDGGISKIGLESTIVNVQ---CEKKVRILRPGGLEIETLKRAIS 207 + +D G S G STIVN+ + I R G + ++ + Sbjct: 178 VYVDAGESPSGQPSTIVNLTKLDAAGQPVIARAGAITAAEIRAVLG 223 >gi|311894848|dbj|BAJ27256.1| putative peptidase M22 family protein [Kitasatospora setae KM-6054] Length = 206 Score = 150 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 36/196 (18%), Positives = 68/196 (34%), Gaps = 4/196 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + G IA PT++ + L N + R+ I+K + D + Sbjct: 14 PRTVSTVVASIRDGALIAYPTDSCFALGCRLDNRDGLDRIRTIRKLDERHHFTLMCEDFA 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + +D K PG T +L L KT R+P T+ L Sbjct: 74 QLGRFVQLDNNVFRAIKAATPGSYTFILPATKEVP-RRLLHPKKKTVGVRIPDHAVTRAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + G+ + + + ++D G + +T+V+ + Sbjct: 133 LAELGEPLVSSTLLLPGEEEPMTQGWEIKERLDHVLDAVVDSGDCGT-VPTTVVDF-SDG 190 Query: 188 KVRILRPGGLEIETLK 203 I+R G + E + Sbjct: 191 TAEIVRYGAGDPERFE 206 >gi|220933377|ref|YP_002512276.1| putative translation factor, SUA5/YciO/YrdC-like protein [Thioalkalivibrio sp. HL-EbGR7] gi|219994687|gb|ACL71289.1| putative translation factor, SUA5/YciO/YrdC-like protein [Thioalkalivibrio sp. HL-EbGR7] Length = 190 Score = 150 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 44/182 (24%), Positives = 77/182 (42%), Gaps = 4/182 (2%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 + +A + AG IA PTE V+GL D RN A+ RL IK+R LI ++ + + Sbjct: 12 DVHRAGALIRAGGVIAYPTEAVFGLGCDPRNEEAVARLLAIKQREVSKGLILIAAEAAQL 71 Query: 71 KKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129 + + +DP + A WPGP+T + + D T + T RV + Sbjct: 72 EPYLLPLDPQTTARAHAAWPGPVTWLWPVRP--DTPRWLTGDHDTLAVRVTDHPLAAALC 129 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 + SAN +G+ ++ + + + ++ G + S I +V+ + Sbjct: 130 REAGAIVSTSANLAGEEPARTDAAVV-AQLGHLLDGVLAGKVGGRDRPSEIRDVRSGAVI 188 Query: 190 RI 191 R Sbjct: 189 RA 190 >gi|167765264|ref|ZP_02437377.1| hypothetical protein BACSTE_03652 [Bacteroides stercoris ATCC 43183] gi|167696892|gb|EDS13471.1| hypothetical protein BACSTE_03652 [Bacteroides stercoris ATCC 43183] Length = 187 Score = 150 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 46/189 (24%), Positives = 85/189 (44%), Gaps = 8/189 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 ++KAC+ + G I PT+T++G+ D+ N A+RR+YEIK+R ++ V Sbjct: 3 EDIKKACQVMREGGVILYPTDTIWGIGCDATNEDAVRRVYEIKQRQDSKAMLVLVDSSVK 62 Query: 70 VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 V + V ++ L PLT++ ++ A + RV F+K+L Sbjct: 63 VDFYVRDVPEVAWDLID-LADKPLTIIYS--GARNLAANLLAEDGSVGIRVTNEDFSKRL 119 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQC 185 + + + SAN SGQ S N +S + + I+ ++ S+I+ + Sbjct: 120 CQQFRKAIVSTSANISGQPSPKNFSE-ISEEVKSAVDYIVGYRQEEMSNPKPSSIIKLDK 178 Query: 186 EKKVRILRP 194 ++I+R Sbjct: 179 GGVIKIIRE 187 >gi|148545343|ref|YP_001265445.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas putida F1] gi|212288214|sp|A5VWK1|RIMN_PSEP1 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|148509401|gb|ABQ76261.1| SUA5/yciO/yrdC, N-terminal domain [Pseudomonas putida F1] Length = 185 Score = 150 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 44/181 (24%), Positives = 67/181 (37%), Gaps = 4/181 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A + AG IA PTE V+GL D N A+ RL +K RP LI +I Sbjct: 7 VQQAAREIRAGAVIAYPTEAVWGLGCDPWNEDAVYRLLALKSRPVDKGLILIADNIRQFD 66 Query: 72 KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130 P WPGP T ++ + T T RV + + Sbjct: 67 FLFEDFPEDWIDRMGSTWPGPNTWLVPHQD--LLPEWVTGQHDTVALRVSDHPVVRELCA 124 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 PL S N G+ + + ++ L++ G + S I N+ + VR Sbjct: 125 LVGPLISTSCNPGGRPAAKTRLRV-EQYFHGQLDLVLGGALGGRKNPSVIRNLATGEVVR 183 Query: 191 I 191 Sbjct: 184 P 184 >gi|121999106|ref|YP_001003893.1| Sua5/YciO/YrdC/YwlC family protein [Halorhodospira halophila SL1] gi|212288207|sp|A1WZH9|RIMN_HALHL RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|121590511|gb|ABM63091.1| translation factor SUA5 [Halorhodospira halophila SL1] Length = 191 Score = 150 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 46/181 (25%), Positives = 74/181 (40%), Gaps = 5/181 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +R A L G +A PTE V+GL D RN A+ RL +K RP LI ++ + Sbjct: 13 VRHAAAELRQGGVVAYPTEAVWGLGCDPRNADAVARLLALKGRPERQGLILIAAESRQLA 72 Query: 72 KH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 ++ A + + WPGP+T VL ++T + T RV L Sbjct: 73 RYLAPLPAEWAETIQASWPGPMTWVLP--ASTRAPRWVSGGRDTLAVRVTAHPVAAALCS 130 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 +G L SAN S + +V + I ++ G + + + I + + + Sbjct: 131 AFGGALVSTSANPSARRPARSVAEV-RRYFGTRIDALVPGRLGGLERPTPIRDGRSGAYL 189 Query: 190 R 190 R Sbjct: 190 R 190 >gi|115495697|ref|NP_001069018.1| yrdC domain-containing protein, mitochondrial precursor [Bos taurus] gi|122145558|sp|Q0VC80|YRDC_BOVIN RecName: Full=YrdC domain-containing protein, mitochondrial; Flags: Precursor gi|111307172|gb|AAI20308.1| YrdC domain containing (E. coli) [Bos taurus] gi|296488877|gb|DAA30990.1| yrdC domain-containing protein, mitochondrial precursor [Bos taurus] Length = 276 Score = 150 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 62/195 (31%), Positives = 96/195 (49%), Gaps = 12/195 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ALR A L AG +A+PT+T+YGLA + A+ +Y +K R PL + ++ Sbjct: 65 TEALRAAVAELRAGAVVAVPTDTLYGLACSASCSEALGAVYRVKGRSETKPLAVCLGRVA 124 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 V ++ V + L K PGP+TLV++ + +++ R+P F + L Sbjct: 125 DVYRYCHVR-VPEGLLKDLLPGPVTLVMER--SEELNKDLNPFTPLVGIRIPDHAFMQDL 181 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE------STIV 181 + +G PLA+ SAN S Q S NV+ + + LIIDGG G ST+V Sbjct: 182 AQMFGGPLALTSANLSSQSSSLNVEE--FQDLWPHLSLIIDGGPIGDGQSPECRLGSTVV 239 Query: 182 NVQCEKKVRILRPGG 196 ++ K I+RPG Sbjct: 240 DLSVPGKFGIIRPGC 254 >gi|327330317|gb|EGE72066.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL097PA1] Length = 222 Score = 150 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 39/190 (20%), Positives = 74/190 (38%), Gaps = 5/190 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +L + + L G IA PT+T Y N A+ R+ ++++ + +S + Sbjct: 30 QRSLNQIVDILHHGGLIAYPTDTGYAFGARLGNKDAVDRIRKLRQLSDKHHFTLVMSQFA 89 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCGF-TKK 126 V ++ +D PG T +L+ +T D+ + KT RVP Sbjct: 90 QVGQYVQMDNWVFRAVSAAVPGRYTFILN--ATRDVPKVMLHPRKKTVGVRVPEHVTALA 147 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+E P+ + GQ + + I ++ ++D G + +T+V+ Sbjct: 148 LLEALNEPIVSSTLILPGQDTPMVDGWQVQDEIGDQLDAVLDSGDCGV-EPTTVVDFTSG 206 Query: 187 KKVRILRPGG 196 + V R G Sbjct: 207 EAVVTRRGAG 216 >gi|290477158|ref|YP_003470073.1| putative RNA-binding protein with unique protein fold, with YrdC/RibB domain [Xenorhabdus bovienii SS-2004] gi|289176506|emb|CBJ83315.1| putative RNA-binding protein with unique protein fold, with YrdC/RibB domain [Xenorhabdus bovienii SS-2004] Length = 189 Score = 150 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 50/191 (26%), Positives = 71/191 (37%), Gaps = 8/191 (4%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 MS S A L IA PTE V+GL D + A+ L +K RP LI Sbjct: 1 MSNKVSPAFDVIITALKEEKVIAYPTEAVFGLGCDPDSEKAVNELLSLKNRPWEKGLILI 60 Query: 64 VSDISMVKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 + + + + FWPGP+T V+ +TT T T RV Sbjct: 61 ADSYERLCLYIDDEQLNDIQKETVFSFWPGPVTWVIPAKTTT--PKWLTGQFSTLAVRVT 118 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 K+L YG L SAN SG + + + +P +++G + S Sbjct: 119 DHPLVKQLCSFYGKALVSTSANLSGLEPCRSAEEV-RQQFGNRVP-VLEGEVGGRKNPSE 176 Query: 180 IVNVQCEKKVR 190 I + K R Sbjct: 177 IRDALTGKLYR 187 >gi|282853958|ref|ZP_06263295.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes J139] gi|282583411|gb|EFB88791.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes J139] gi|314923353|gb|EFS87184.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL001PA1] gi|314981030|gb|EFT25124.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL110PA3] gi|315091860|gb|EFT63836.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL110PA4] Length = 222 Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats. Identities = 39/190 (20%), Positives = 74/190 (38%), Gaps = 5/190 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +L + + L G IA PT+T Y N A+ R+ ++++ + +S + Sbjct: 30 QRSLNQVVDILHHGGLIAYPTDTGYAFGARLGNKDAVDRIRKLRQLSDKHHFTLVMSQFA 89 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCGF-TKK 126 V ++ +D PG T +L+ +T D+ + KT RVP Sbjct: 90 QVGQYVQMDNWVFRAVSAAVPGRYTFILN--ATRDVPKVMLHPRKKTVGVRVPEHVTALA 147 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+E P+ + GQ + + I ++ ++D G + +T+V+ Sbjct: 148 LLEALNEPIVSSTLILPGQDTPMVDGWQVQDEIGDQLDAVLDSGDCGV-EPTTVVDFTSG 206 Query: 187 KKVRILRPGG 196 + V R G Sbjct: 207 EAVITRRGAG 216 >gi|238754208|ref|ZP_04615566.1| Ribosomal modification protein RimN [Yersinia ruckeri ATCC 29473] gi|238707704|gb|EEQ00064.1| Ribosomal modification protein RimN [Yersinia ruckeri ATCC 29473] Length = 189 Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats. Identities = 46/191 (24%), Positives = 74/191 (38%), Gaps = 8/191 (4%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 MS + + + L IA PTE V+GL D + A+ L +K+RP LI Sbjct: 1 MSKEEVSRFEGVLQALQQEEIIAYPTEAVFGLGCDPDSEKAVNDLLALKQRPWQKGLILI 60 Query: 64 VSDISMVKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 ++ + + + D WPGP+T V+ + TT T + + RV Sbjct: 61 AANYEQLLPYINDEKLDDTQRATIFSSWPGPVTWVIPVRKTT--PRWLTGHFNSLAVRVS 118 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 ++L YG PL SAN SG + + + P ++ G + S Sbjct: 119 DHPLVQQLCTYYGKPLVSTSANLSGLEPCRTEEDV-RKQFGADFP-VLSGLVGGRLNPSE 176 Query: 180 IVNVQCEKKVR 190 I + + R Sbjct: 177 IRDALTGEHFR 187 >gi|127513177|ref|YP_001094374.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella loihica PV-4] gi|126638472|gb|ABO24115.1| translation factor SUA5 [Shewanella loihica PV-4] Length = 206 Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats. Identities = 42/191 (21%), Positives = 74/191 (38%), Gaps = 4/191 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + +A + G + PT++ Y L A+ R+ I++ + V D S + Sbjct: 17 INQAVNVIKQGGVVVYPTDSGYALGCLLGEKDAMTRIVRIRQIENDHNFSLMVRDQSELA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIET 130 +A VD + + K PGP T + L KT RVP L+E Sbjct: 77 TYARVDNQAYRVLKHNTPGPFTFIFKATKEVP-KRLQNPKKKTIGIRVPDNVIALALLEA 135 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 PL S G+ + + + ++ +II GG +T++++ E + Sbjct: 136 LDAPLMSTSLILPGEEFTESDPEHIRDILEHQVDVIIHGGYLGE-KPTTVIDL-SEGDIE 193 Query: 191 ILRPGGLEIET 201 ILR G ++ Sbjct: 194 ILREGAGDVSQ 204 >gi|242280257|ref|YP_002992386.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio salexigens DSM 2638] gi|242123151|gb|ACS80847.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio salexigens DSM 2638] Length = 202 Score = 150 bits (379), Expect = 4e-34, Method: Composition-based stats. Identities = 49/195 (25%), Positives = 78/195 (40%), Gaps = 4/195 (2%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 ++A L G + PTET++ + D+ + A R+ IK RP PL + I + Sbjct: 4 QEAVNILRTGGVLVYPTETLFAIGADAMDERAANRVALIKGRPVSKPLPLIIGSIDQLDL 63 Query: 73 HAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIET 130 V P L L K FWPGPL++++ + ++ + R +L Sbjct: 64 VTESVSPELLKLTKKFWPGPLSILV--KAREELPSAVKDSRGYTSVRWTDHPRAAELCLK 121 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 PL SAN SG+ + + + K G ST+V + K++ Sbjct: 122 AHAPLIATSANMSGKPGTGIAAELDAELTIMVEGVYTPDPGPKGGNPSTVVEPLADNKIK 181 Query: 191 ILRPGGLEIETLKRA 205 I R G + E L A Sbjct: 182 IFRDGVVTREQLTNA 196 >gi|295099926|emb|CBK89015.1| Sua5/YciO/YrdC/YwlC family protein [Eubacterium cylindroides T2-87] Length = 203 Score = 150 bits (379), Expect = 4e-34, Method: Composition-based stats. Identities = 62/204 (30%), Positives = 94/204 (46%), Gaps = 7/204 (3%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 M + + + + IAIPT+TVYG+ V + A+ L K RP P+ Sbjct: 1 MKQYTQDQIHEVAKAFKDHEIIAIPTDTVYGVGVMYGDLDALHNLKHAKHRPETKPIPMM 60 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-G 122 VS + ++ A +D + +AK F PG LTLVL + D + L+T R+P Sbjct: 61 VSKLEQLEGIAIIDERTKVIAKHFLPGALTLVLPVDPRLDKSYNN--GLETIAIRIPDEE 118 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 F LI+ PL + SAN+SG + + +L I I+ G + STIV+ Sbjct: 119 FVLSLIDELDTPLLVTSANQSGAPTALKYEDVLEQL--PNIDGIVLG-KCRALQASTIVD 175 Query: 183 VQCEKKVRILRPGGLEIETLKRAI 206 E ++ILR G + +E L I Sbjct: 176 CTKED-LKILREGPISLEELVCVI 198 >gi|294673011|ref|YP_003573627.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella ruminicola 23] gi|294473050|gb|ADE82439.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella ruminicola 23] Length = 194 Score = 150 bits (379), Expect = 4e-34, Method: Composition-based stats. Identities = 49/196 (25%), Positives = 90/196 (45%), Gaps = 11/196 (5%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV- 64 + + +++A E + G I PT+TV+G+ D+ N A++R+YEIK+R LIC V Sbjct: 1 MKQEDDIKQAIETMRKGGVILYPTDTVWGIGCDATNAEAVKRVYEIKQREDSKALICLVD 60 Query: 65 SDISMVKKHASVDPLSLHLAKLFWP----GPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 SD M + +V ++ L P TL+LD ++ P A + R+ Sbjct: 61 SDARMQRYFRNVPDVAWQLIDSLKEATDAKPTTLILD--GAINLAPNLIAEDGSLGIRIT 118 Query: 121 C-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--GLE 177 F+K+L + + SAN SG+ + N + I + + + + Sbjct: 119 NEPFSKELCFRFQKAIVSTSANISGEPAAQNYCD-IDPRILEAVDYVCWSRRQEHKPHTP 177 Query: 178 STIVNVQCEKKVRILR 193 S+I+ ++ +V ++R Sbjct: 178 SSIIKLKENGEVTVIR 193 >gi|255530767|ref|YP_003091139.1| Sua5/YciO/YrdC/YwlC family protein [Pedobacter heparinus DSM 2366] gi|255343751|gb|ACU03077.1| Sua5/YciO/YrdC/YwlC family protein [Pedobacter heparinus DSM 2366] Length = 188 Score = 150 bits (379), Expect = 4e-34, Method: Composition-based stats. Identities = 43/189 (22%), Positives = 75/189 (39%), Gaps = 8/189 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + KA L G I PT+TV+GL D+ N A ++ IK R I + + Sbjct: 4 TEIEKALAVLKDGGVILYPTDTVWGLGCDATNEQAAAKINAIKGRAEDKSFIVLLDTDAK 63 Query: 70 VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 ++ + V ++ L + + PLTLV ++ + R+ F ++L Sbjct: 64 IQSYVTEVPDVAYDLIE-YAENPLTLVFPGAK--NLAKNVINADGSVGIRIARHEFCQQL 120 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK--IGLESTIVNVQC 185 I+ + P+ SAN SG + +S I + +ID STI+ + Sbjct: 121 IQRFRKPITSTSANVSGAATPGFFDE-ISEEIKVAVDYVIDWEQELKISKKPSTIMKLAP 179 Query: 186 EKKVRILRP 194 + +R Sbjct: 180 GGQFSFIRR 188 >gi|71892003|ref|YP_277733.1| RNA-binding protein [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|123641086|sp|Q493I0|RIMN_BLOPB RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|71796109|gb|AAZ40860.1| putative RNA-binding protein with unique protein fold, with YrdC/RibB domain [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 194 Score = 150 bits (379), Expect = 4e-34, Method: Composition-based stats. Identities = 52/193 (26%), Positives = 82/193 (42%), Gaps = 8/193 (4%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 + I S ++ L G I PTE+V+GL D N AI L +IK R LI Sbjct: 6 TIRIFSSPNMKDLLIQLSQGKVIIYPTESVFGLGCDPDNKNAISTLLKIKNRSWKKGLIL 65 Query: 63 HVSDISMVKKHASVDPLSL-HLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 ++ + + K+ L+ +++F WPGP+T V + T + RV Sbjct: 66 VAANYTQLLKYIDDSCLNETQRSRVFSTWPGPMTWVFPAQANR--SYWLTGQFSSVAVRV 123 Query: 120 PC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 ++L +G PL SAN SGQ+ ++ + + +IP I+ I S Sbjct: 124 SHFEPIQRLCLAFGKPLVSTSANLSGQLPARTIEEV-HDQLGYKIP-IMHEDILGRPNPS 181 Query: 179 TIVNVQCEKKVRI 191 I +V K +R Sbjct: 182 KIRDVMTGKLIRE 194 >gi|323700777|ref|ZP_08112689.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio sp. ND132] gi|323460709|gb|EGB16574.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio desulfuricans ND132] Length = 203 Score = 150 bits (379), Expect = 4e-34, Method: Composition-based stats. Identities = 49/193 (25%), Positives = 84/193 (43%), Gaps = 4/193 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++ + L +G + PTET+Y L D+ + A R+ E+K R PL + + M+ Sbjct: 1 MQELLKVLRSGGIVIYPTETLYALGCDATSEAACNRVAEVKGRSEERPLPLIIGGMDMLD 60 Query: 72 KHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129 S L LA FWPGPL++++ L D+ + + R F +L Sbjct: 61 LVTGEKTRSLLDLAGAFWPGPLSILVKALP--DLPAWLSDDEGYTSVRWSGHPFASELSR 118 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 + P+ SAN SG+ + I + + D + ST+V + K+ Sbjct: 119 RFRKPIVATSANLSGKPPAALPEDIDPALLEMVDGSYFDPPWPRGHKASTVVRLLGSSKL 178 Query: 190 RILRPGGLEIETL 202 I+R G + I+ L Sbjct: 179 EIIREGEISIKKL 191 >gi|319899941|ref|YP_004159669.1| translation factor SUA5 [Bacteroides helcogenes P 36-108] gi|319414972|gb|ADV42083.1| translation factor SUA5 [Bacteroides helcogenes P 36-108] Length = 187 Score = 150 bits (379), Expect = 4e-34, Method: Composition-based stats. Identities = 46/189 (24%), Positives = 85/189 (44%), Gaps = 8/189 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 ++KAC+ + G I PT+T++G+ D+ N A+RR+YEIK+R ++ V Sbjct: 3 EDIKKACQVMSEGGIILYPTDTIWGIGCDATNEDAVRRVYEIKQRSDSKAMLVLVDSSVK 62 Query: 70 VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 V + V ++ L PLT++ ++ A + RV F+K+L Sbjct: 63 VDFYVQDVPEIAWDLID-LADKPLTVIYS--GARNLASNLLAEDGSVGIRVTNEEFSKRL 119 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQC 185 + + SAN SGQ S + ++ I + I+ ++G S+I+ + Sbjct: 120 CRQFRKAIVSTSANVSGQPSPGSFCE-ITEDIKSAVDYIVKYRQEEMGHPKPSSIIKLDK 178 Query: 186 EKKVRILRP 194 ++I+R Sbjct: 179 GGVIKIIRE 187 >gi|257056019|ref|YP_003133851.1| translation factor SUA5 [Saccharomonospora viridis DSM 43017] gi|256585891|gb|ACU97024.1| translation factor SUA5 [Saccharomonospora viridis DSM 43017] Length = 202 Score = 149 bits (378), Expect = 4e-34, Method: Composition-based stats. Identities = 32/196 (16%), Positives = 70/196 (35%), Gaps = 4/196 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 A+ + + L + + PT++ + L N + R+ I++ + D + Sbjct: 10 PRAIAQTVKALRSDGVVVYPTDSCFALGCALGNKQGMDRIRAIRRLDQRHHFTLVCRDFA 69 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + ++ K PG T +L L KT R+P + L Sbjct: 70 QLAQFVHMNNAVFRAIKAAVPGGYTFILPATKEVP-RQLWHPKKKTVGARIPDHTVAQAL 128 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G P+ + G+ + + + L++D G G++ST V + Sbjct: 129 LTELGEPIVSSTLLLPGEEDPMTQGWDIKERLDASVDLVLDSGDC--GVDSTTVVDFSDG 186 Query: 188 KVRILRPGGLEIETLK 203 ++R G + + + Sbjct: 187 VPEVVREGTGDPDRFR 202 >gi|149928539|ref|ZP_01916768.1| Sua5/YciO/YrdC/YwlC family protein [Limnobacter sp. MED105] gi|149822738|gb|EDM81996.1| Sua5/YciO/YrdC/YwlC family protein [Limnobacter sp. MED105] Length = 218 Score = 149 bits (378), Expect = 4e-34, Method: Composition-based stats. Identities = 41/188 (21%), Positives = 80/188 (42%), Gaps = 3/188 (1%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 ++A + +++G AIPT++ Y L + A+ RL +K L D+S + Sbjct: 18 KQAADLINSGGIAAIPTDSCYALVCHLDDKNAVERLRRLKGISEKQHLALLCKDLSELGS 77 Query: 73 HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY 131 +A V+ + L K +PGP T +L+ +S + K+ RVP + L+E Sbjct: 78 YAKVNNVQYRLLKSVFPGPYTFILEATKEVP-KRVSHPSKKSIGLRVPAHAVVQGLLEHI 136 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 L + G ++ ++ LI+D G +T+++ E+ + + Sbjct: 137 EGALIATTLQLPGMEEPARSGWEAQEAVGNDVDLIVDDGEYCGAFPTTVIDWTSEEPL-V 195 Query: 192 LRPGGLEI 199 +R G + Sbjct: 196 VRIGAGPL 203 >gi|289208889|ref|YP_003460955.1| Sua5/YciO/YrdC/YwlC family protein [Thioalkalivibrio sp. K90mix] gi|288944520|gb|ADC72219.1| Sua5/YciO/YrdC/YwlC family protein [Thioalkalivibrio sp. K90mix] Length = 204 Score = 149 bits (378), Expect = 4e-34, Method: Composition-based stats. Identities = 45/197 (22%), Positives = 82/197 (41%), Gaps = 4/197 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +R+ + L G IAIPT+ Y LA + R+ I++ + L D+S Sbjct: 11 PRLVRQVLDRLHEGTVIAIPTDACYALACLPGDKAGADRIRRIRQVDETHHLTLLCRDLS 70 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD + L K PGP T +L L +T RVP L Sbjct: 71 ELGVYAKVDNTAFRLMKGLTPGPYTFILPATREVP-RRLQHPKRRTIGLRVPDSRIVSAL 129 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL + G+ + ++ + K + ++DGG + ++++++ + Sbjct: 130 LEELGSPLMTATLQLPGEDLPLSEPWVIDERLSKVVDEVVDGGAGTL-EPTSVIDLTGDV 188 Query: 188 KVRILRPGGLEIETLKR 204 I+R G ++ L+ Sbjct: 189 P-EIIRHGVGDVAFLEE 204 >gi|262089750|gb|ACY24844.1| Sua5/YciO/YrdC/YwlC family protein [uncultured organism] Length = 173 Score = 149 bits (378), Expect = 4e-34, Method: Composition-based stats. Identities = 42/173 (24%), Positives = 70/173 (40%), Gaps = 5/173 (2%) Query: 21 AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPL 79 G +A PTE V+GL + + A+ RL ++K+RP LI +DIS+ + ++ + Sbjct: 3 QGGVVAYPTEAVWGLGCNPFSEDAVMRLLDMKQRPVNKGLILLAADISLFEPFIYHLNDI 62 Query: 80 SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGHPLAIP 138 K WPGP+T ++ T + RV L +G P+ Sbjct: 63 QRQRIKKTWPGPVTWLIPN--NGLAPKWITGDYTGVALRVTDHPVAAGLSRAFGAPIVST 120 Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 S N G+ + + E+ I G + K S I ++ + VR Sbjct: 121 SCNLQGRAPARSGFDV-HRYFGDELDAITSGAVGKRANPSEIRDLMTGEVVRA 172 >gi|290955357|ref|YP_003486539.1| hypothetical protein SCAB_7831 [Streptomyces scabiei 87.22] gi|260644883|emb|CBG67969.1| conserved hypothetical protein [Streptomyces scabiei 87.22] Length = 206 Score = 149 bits (378), Expect = 4e-34, Method: Composition-based stats. Identities = 32/196 (16%), Positives = 67/196 (34%), Gaps = 4/196 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 A+ + + + G IA PT++ + L + I R+ I++ + + + Sbjct: 14 PRAIGQVADSIRQGGLIAYPTDSCFALGCQLGSRDGIERIRTIRQLDDRHHFTLVCENFA 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + VD K PG T +L L KT R+P + L Sbjct: 74 QLGQFVHVDNDVFRAVKASTPGSYTFILPATREVP-RKLLHPKKKTVGVRIPDHRVVQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + + + + + ++D G +T+++ Sbjct: 133 LAELGEPLVSSTLLLPDEEEPLTQGWEIKERLDYLVDAVVDSGDCGT-EPTTVIDFSS-G 190 Query: 188 KVRILRPGGLEIETLK 203 + I+R G + + Sbjct: 191 EAEIIRKGAGDTSRFE 206 >gi|254994878|ref|ZP_05277068.1| hypothetical protein AmarM_01965 [Anaplasma marginale str. Mississippi] Length = 197 Score = 149 bits (378), Expect = 4e-34, Method: Composition-based stats. Identities = 48/181 (26%), Positives = 88/181 (48%), Gaps = 4/181 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++ E L + PT+T+Y LA + + +++RLYEIK+R P+ ++ ++ ++ Sbjct: 1 MQRVVEALRKEQIVCFPTDTLYALACSALSANSVQRLYEIKRRQYHKPIPILLNSLAAIR 60 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 K AS+ + + PGP+T V+ L T + T R+P + ++E Sbjct: 61 KFASLKDEDWGIIERLSPGPVTFVVPLHDTQSLPGEFF--RGTVGVRIPDHAMARTILEE 118 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 +G P+A SAN SG I I + +++ + G+ ST+ +VQ K +R Sbjct: 119 FGGPVAATSANLSGMPGARRAMEIPRE-IRDCVSELMEDDSAVGGMCSTVFDVQSRKVLR 177 Query: 191 I 191 I Sbjct: 178 I 178 >gi|213963761|ref|ZP_03392011.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga sputigena Capno] gi|213953641|gb|EEB64973.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga sputigena Capno] Length = 185 Score = 149 bits (378), Expect = 5e-34, Method: Composition-based stats. Identities = 46/180 (25%), Positives = 83/180 (46%), Gaps = 6/180 (3%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 E L G I PT+TV+GL D+ NP A+ ++++IK+R LI VSDI M++++ + Sbjct: 9 EILKEGKIILYPTDTVWGLGCDATNPEAVAKIFQIKQRSESKSLIILVSDIQMLQQYVTA 68 Query: 77 DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLIETYGHPL 135 P + P T++ + A T R V F +++I +G P+ Sbjct: 69 VPSKVLAYLQTLQEPTTIIYSHP--LHLAKNVIAADDTVAIRVVQDAFCQQMIADFGKPI 126 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDG--GISKIGLESTIVNVQCEKKVRILR 193 SAN SG+ + ++ I + ++ ++I S ++ + ++ ILR Sbjct: 127 VSTSANISGEPTPL-YYQLIDPKIIAQCDYVVPYRQDDTQIKNPSRLIRFDADGEILILR 185 >gi|289664817|ref|ZP_06486398.1| Sua5/YciO/YrdC family protein [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 187 Score = 149 bits (378), Expect = 5e-34, Method: Composition-based stats. Identities = 48/184 (26%), Positives = 76/184 (41%), Gaps = 7/184 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L A L G IA PTE V+GL D R A+ RL EIK+RP +I + +++ Sbjct: 7 LDNAVATLTQGGVIAYPTEAVWGLGCDPRQEAAVMRLLEIKRRPVDKGVIVVAPSVDVLR 66 Query: 72 KHASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 +D P WPGP T +L + T T R+ L Sbjct: 67 DWVDIDALEPARRQDVLASWPGPHTWILPV--TERAPRWVTGEHDGLAVRISAHPVVAAL 124 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +G PL SAN +G+ + + L ++ I ++DG + + + I + + + Sbjct: 125 CAAWGAPLVSTSANLAGEPPARS-RAALDPALLATIDGVVDGEVGTLAQPTQIRDARSGQ 183 Query: 188 KVRI 191 +R Sbjct: 184 ILRD 187 >gi|227354900|ref|ZP_03839314.1| translation factor [Proteus mirabilis ATCC 29906] gi|227164982|gb|EEI49821.1| translation factor [Proteus mirabilis ATCC 29906] Length = 189 Score = 149 bits (377), Expect = 5e-34, Method: Composition-based stats. Identities = 48/180 (26%), Positives = 71/180 (39%), Gaps = 8/180 (4%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 E L IA PTE V+G+ D + +A+ L E+K+R LI + +K + Sbjct: 12 IIEALQNNQVIAYPTEAVFGVGCDPDSESAVMALLELKQRAIEKGLILIADNYEQLKPYI 71 Query: 75 SVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 + L+ WPGP+T V+ S T T + RV K L Sbjct: 72 DDNALTQEQRERMFASWPGPITWVIPAKSIT--PKWLTGRFSSLAVRVTDHPIVKALCVA 129 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 YG PL SAN SG +V+ + I I++G + S I + + R Sbjct: 130 YGKPLVSTSANLSGLPPCRSVEEV-QEQFRNRI-AIVNGEVGGRKNPSEIRDALTGELYR 187 >gi|167765241|ref|ZP_02437354.1| hypothetical protein BACSTE_03629 [Bacteroides stercoris ATCC 43183] gi|167696869|gb|EDS13448.1| hypothetical protein BACSTE_03629 [Bacteroides stercoris ATCC 43183] Length = 204 Score = 149 bits (377), Expect = 5e-34, Method: Composition-based stats. Identities = 47/195 (24%), Positives = 79/195 (40%), Gaps = 9/195 (4%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICH 63 + L++ + L+ G I PT+T+Y + AI R+ ++K P N L Sbjct: 8 KNNNPADLQQVIDILNDGGIIIYPTDTMYAIGCHGLKERAIERICQLKNTDPKKNNLSII 67 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 D+S + ++A D + L K PG T +L+ T P N K R+P Sbjct: 68 CYDLSSISEYAKFDNNTFKLMKRNLPGAFTFILN---GTVRLPKIFRNRKEVGIRMPDHP 124 Query: 123 FTKKLIETYGHPLAIPSANR--SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 ++L P+ + + I ++ + L+IDGGI I ST+ Sbjct: 125 IIRELARLLDAPIMTATLPHNENEDIEYCTDPELIDEKFGNIVDLVIDGGIGGIEG-STV 183 Query: 181 VNVQCEKKVRILRPG 195 V+ + I+R G Sbjct: 184 VDCTG-GEAEIVRQG 197 >gi|307107023|gb|EFN55267.1| hypothetical protein CHLNCDRAFT_35508 [Chlorella variabilis] Length = 284 Score = 149 bits (377), Expect = 5e-34, Method: Composition-based stats. Identities = 53/184 (28%), Positives = 84/184 (45%), Gaps = 4/184 (2%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A E L IA+PT+T+YGLA +R+ + +Y K+R PL V+DI+ V + A Sbjct: 83 AAEALGRAEVIAVPTDTLYGLAACARSSQGVAHIYATKRRGDHKPLAIAVADIADVPRFA 142 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGH 133 V L L + PGP+TL+L + + R+P F + + + Sbjct: 143 DVQHLPEGLLEDLLPGPVTLLLQRRPDAPLAAQFNPGVGAIGIRIPDSAFIRAVCRQHRA 202 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKKVRIL 192 LA+ SAN SG +S +V + L+ DGG G ST++++ + + Sbjct: 203 ALALTSANISGSMSSVDVGE--FQELWPSCSLVFDGGQLDAGRSGSTVIDLTQPGQFSVA 260 Query: 193 RPGG 196 R G Sbjct: 261 RRGA 264 >gi|88601863|ref|YP_502041.1| Sua5/YciO/YrdC/YwlC [Methanospirillum hungatei JF-1] gi|88187325|gb|ABD40322.1| translation factor SUA5 [Methanospirillum hungatei JF-1] Length = 180 Score = 149 bits (377), Expect = 5e-34, Method: Composition-based stats. Identities = 50/186 (26%), Positives = 81/186 (43%), Gaps = 13/186 (6%) Query: 23 LPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH 82 + PT+T+YGL D+ + AI +++E K R P+ VSD M+ A VD ++ Sbjct: 4 GLVVYPTDTLYGLGADALSDEAILKVFEAKGREYHKPISIAVSDPDMIGAVAYVDEMAEQ 63 Query: 83 LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSAN 141 + F PGP+TL+L + + TA K R P +LI Y P+ SAN Sbjct: 64 FIEEFLPGPVTLILP--ARNILSTRLTAGTKKIGIRYPNHEVALELISRYDTPITATSAN 121 Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIET 201 SG + +C G ST+V++ + R + G +IE+ Sbjct: 122 LSGGPDPVTI------DLCNVPYDCAVNVGPLSGTPSTVVDL----EFREIIRVGADIES 171 Query: 202 LKRAIS 207 + ++ Sbjct: 172 VASFLA 177 >gi|227496187|ref|ZP_03926493.1| RNA binding protein [Actinomyces urogenitalis DSM 15434] gi|226834270|gb|EEH66653.1| RNA binding protein [Actinomyces urogenitalis DSM 15434] Length = 205 Score = 149 bits (377), Expect = 5e-34, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 78/195 (40%), Gaps = 4/195 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + K + L G +A PT++ Y LA N + R+ I++ + +D + Sbjct: 14 ARLVSKVVDTLHDGGLVAYPTDSGYALACAPGNKEGLDRIRAIRQLDDKHNFTFVCADFA 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 A V + L K PGP T +L L+ T R+P T+ L Sbjct: 74 QAGPLAIVGNNAFRLIKRLTPGPWTFILKGTKEVPRMTLNPKKH-TLGVRIPDHAITQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + +G P+ + R G + ++ I ++I+G ++ +T+V++ + Sbjct: 133 VAGFGAPILSSTFIRPGNEEPETSGWEIEDALGHLIDVVIEGPVTST-EPTTVVDLTSDV 191 Query: 188 KVRILRPGGLEIETL 202 + R G ++ L Sbjct: 192 P-EVAREGAGDVSLL 205 >gi|33592648|ref|NP_880292.1| hypothetical protein BP1556 [Bordetella pertussis Tohama I] gi|33596862|ref|NP_884505.1| hypothetical protein BPP2258 [Bordetella parapertussis 12822] gi|33572294|emb|CAE41846.1| conserved hypothetical protein [Bordetella pertussis Tohama I] gi|33573563|emb|CAE37557.1| conserved hypothetical protein [Bordetella parapertussis] gi|332382065|gb|AEE66912.1| hypothetical protein BPTD_1539 [Bordetella pertussis CS] Length = 208 Score = 149 bits (377), Expect = 5e-34, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 76/189 (40%), Gaps = 3/189 (1%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A ++L G +A+PT++ Y + + A L ++ + L D++ Sbjct: 14 PRLIKQAAQWLSDGGLVAVPTDSSYAVVAPLDDKAAADALRRLRGLDERHHLTLLCRDLA 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + A VD L K PGP T +L+ +S + KT RVP L Sbjct: 74 EIGQVARVDNKQYRLLKAATPGPWTFILEATREVP-RRVSHPSRKTIGIRVPAHAVALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL + + N + E+ +ID G +T+V++ + Sbjct: 133 LEQVGAPLLSTTLIPRDEEDALNDPEAIQERYQHELAAVIDAGACPQ-TPTTVVDLTGAE 191 Query: 188 KVRILRPGG 196 + R GG Sbjct: 192 PAVLRRGGG 200 >gi|197294283|ref|YP_001798824.1| Translation factor [Candidatus Phytoplasma australiense] gi|171853610|emb|CAM11481.1| Translation factor [Candidatus Phytoplasma australiense] Length = 188 Score = 149 bits (377), Expect = 5e-34, Method: Composition-based stats. Identities = 48/182 (26%), Positives = 78/182 (42%), Gaps = 6/182 (3%) Query: 24 PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHL 83 I PT+TVYG+ V + ++ +Y++KKR +I S + + + +S L Sbjct: 10 IIIFPTDTVYGMGVSLYDEKGLKEIYQLKKRSLQKNIIVLCSSLKEAQTLVKFNEISYQL 69 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRS 143 A F+PGPLTL+L T L KT R+P + PL S N S Sbjct: 70 ATKFFPGPLTLIL----KTQTSYLKKTGQKTLGIRIPNHPLALSLLKKYGPLKTTSVNES 125 Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203 G+ N + + ++ I + + STIV+ K + +LR G + +K Sbjct: 126 GKE-PLNYYNTIYQMYNNKVGFIYPNDYPILKVASTIVDATTNK-LIVLRQGSISEAEIK 183 Query: 204 RA 205 + Sbjct: 184 KI 185 >gi|308799281|ref|XP_003074421.1| yrdC protein-related (ISS) [Ostreococcus tauri] gi|116000592|emb|CAL50272.1| yrdC protein-related (ISS) [Ostreococcus tauri] Length = 239 Score = 149 bits (377), Expect = 5e-34, Method: Composition-based stats. Identities = 58/199 (29%), Positives = 99/199 (49%), Gaps = 7/199 (3%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +A+ A L G IA+PT+T+YG A + + A+RRLYEIK R A + V D+ Sbjct: 31 DAVALAVGALRRGGVIAVPTDTIYGFAARAEDGAAVRRLYEIKGRKATVAVAIAVGDVGD 90 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD--IHPLSTANLKTACFRVP-CGFTKK 126 + ++ L L PGP+T++L ++ + + RVP F ++ Sbjct: 91 IGRYGECSHLREGLLGRILPGPVTVLLRRRASEEGGASSELNPGVDLIGIRVPASDFVRE 150 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIVNV-Q 184 + +G +A+ SANRSG+ S T+V+ + + + DGG+ + L STIV++ Sbjct: 151 VCRAHGSAIALTSANRSGETSTTSVEE--FAELWDACAEVFDGGVIETKRLGSTIVDLSS 208 Query: 185 CEKKVRILRPGGLEIETLK 203 + + ++R G E L+ Sbjct: 209 TDGRYGVVREGEKCAELLE 227 >gi|162418116|ref|YP_001606745.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis Angola] gi|162350931|gb|ABX84879.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis Angola] Length = 176 Score = 149 bits (377), Expect = 6e-34, Method: Composition-based stats. Identities = 40/174 (22%), Positives = 72/174 (41%), Gaps = 4/174 (2%) Query: 27 IPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKL 86 PT++ Y L + TA+ R+ I++ + D+S + +A VD + L K Sbjct: 2 YPTDSGYALGCRLEDKTAMERICRIRQLDGNHNFTLVCRDLSELSTYAYVDNSAFRLIKN 61 Query: 87 FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQ 145 PG T +L L KT RVP L++ G PL + G Sbjct: 62 NTPGNYTFILKATKEVP-RRLMNDKRKTIGLRVPSNPIALALLDALGEPLMSTTLMLPGN 120 Query: 146 ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEI 199 + + ++ K++ LII GG S +T++++ + ++R G ++ Sbjct: 121 DFAESDPEEIKENLGKQVDLIIHGG-SLGQQPTTVIDLT-DSAPEVIREGAGDV 172 >gi|89902007|ref|YP_524478.1| Sua5/YciO/YrdC/YwlC [Rhodoferax ferrireducens T118] gi|89346744|gb|ABD70947.1| Sua5/YciO/YrdC/YwlC [Rhodoferax ferrireducens T118] Length = 207 Score = 149 bits (377), Expect = 6e-34, Method: Composition-based stats. Identities = 47/195 (24%), Positives = 81/195 (41%), Gaps = 4/195 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 L++A LD G +A+PT++ Y L + A +L I+ + L D+S Sbjct: 14 PRLLKQAITLLDQGDILAVPTDSSYALVCHLDDKAAADKLRRIRGVDDKHHLTLLCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD K PGP T +L LS + KT RVP + L Sbjct: 74 ELANYAQVDNQQFRRIKSATPGPYTFILQASKEVP-RRLSHPSRKTIGLRVPEHKVLQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ + PL + G++ N + K+I +ID G +T+V++ + Sbjct: 133 LDLHNGPLLATTLIPPGEVEPINDALEIRERYKKQIAAVIDAGACPR-EPTTVVDLTESE 191 Query: 188 KVRILRPGGLEIETL 202 + ++R G + L Sbjct: 192 PI-VIRQGRGSLAAL 205 >gi|319789197|ref|YP_004150830.1| Sua5/YciO/YrdC/YwlC family protein [Thermovibrio ammonificans HB-1] gi|317113699|gb|ADU96189.1| Sua5/YciO/YrdC/YwlC family protein [Thermovibrio ammonificans HB-1] Length = 206 Score = 149 bits (377), Expect = 6e-34, Method: Composition-based stats. Identities = 53/198 (26%), Positives = 80/198 (40%), Gaps = 6/198 (3%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 L ++AG +PT+T+YGL + N A+ R+Y IK R PLI Sbjct: 8 EELPTIASLINAGAVGCLPTDTLYGLVGSALNGNAVSRVYRIKGRDPNKPLIVLFKSPEQ 67 Query: 70 VKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128 + + V K +P P+TLVL L ++ + RVP + Sbjct: 68 LGELGVKVPKALEKGIKALYPAPVTLVLPLSESSPFRSIF--KRDDLAVRVPNSPLLLEL 125 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 PL PSAN G N + L + +G + STIV V E + Sbjct: 126 LELTGPLFAPSANPQGLKPAENCRECLK-YFKNAVDFCAEGRAGN--VASTIVKVLPEGE 182 Query: 189 VRILRPGGLEIETLKRAI 206 +++LR G +E E +K + Sbjct: 183 LKLLREGAVEFEKVKEVL 200 >gi|307212489|gb|EFN88220.1| YrdC domain-containing protein, mitochondrial [Harpegnathos saltator] Length = 243 Score = 149 bits (377), Expect = 6e-34, Method: Composition-based stats. Identities = 53/191 (27%), Positives = 87/191 (45%), Gaps = 9/191 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 ++ A L IA+PT+T+YGLA + + AI RLY+IKKR P+ +S++ Sbjct: 36 RSIGIAATLLQQNKVIAVPTDTIYGLACLASSTEAIERLYQIKKRDERKPVAICLSNVKD 95 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129 V + A D L L + PGP T++L ++++P ++ RVP + I Sbjct: 96 VTQWAVTDNLPSCLLEKLLPGPYTIILKH--KSNLNPALNPDIDNIGIRVPSSRFMRSIA 153 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS-----KIGLESTIVNVQ 184 P+A+ SAN S + S S + E+ I + ST+V++ Sbjct: 154 KIVGPIALTSANISNKPSTLYPDE--FSMLWPELDGIFYDLTCMKRTNAHRVGSTVVDLS 211 Query: 185 CEKKVRILRPG 195 +I+R G Sbjct: 212 QPGFYKIVRHG 222 >gi|325000327|ref|ZP_08121439.1| Sua5/YciO/YrdC/YwlC family protein [Pseudonocardia sp. P1] Length = 206 Score = 149 bits (376), Expect = 7e-34, Method: Composition-based stats. Identities = 35/196 (17%), Positives = 72/196 (36%), Gaps = 4/196 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++ + + + G IA PT++ + L N I R+ +I+K + ++ + Sbjct: 14 PRSIGQVADLVREGGLIAYPTDSCFALGCSLGNKEGIDRIRQIRKLDDKHHFTLVCAEFA 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127 + + + K PG T +L L KT R+P T+ L Sbjct: 74 QLGQFVQISNAVFRAVKASTPGSYTFILPATKEVP-RRLLHPKKKTVGVRIPDHATTQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + G + + ++ +ID G +T+V++ ++ Sbjct: 133 LANLGEPLLSSTLLLPGHDEPLTQGWDIKEELDNQVDAVIDSGDCGT-EPTTVVDLSGDE 191 Query: 188 KVRILRPGGLEIETLK 203 I+R G + + Sbjct: 192 P-EIIRTGAGDPSRFE 206 >gi|332672177|ref|YP_004455185.1| Sua5/YciO/YrdC/YwlC family protein [Cellulomonas fimi ATCC 484] gi|332341215|gb|AEE47798.1| Sua5/YciO/YrdC/YwlC family protein [Cellulomonas fimi ATCC 484] Length = 206 Score = 149 bits (376), Expect = 7e-34, Method: Composition-based stats. Identities = 34/189 (17%), Positives = 71/189 (37%), Gaps = 4/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 A+ + + L G IA PT++ Y L + R+ I+ + +D + Sbjct: 14 PRAITQVVDLLREGGLIAYPTDSCYALGCRVGDQEGAERIRRIRHLDDRHHFTLVCADFA 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + +D + K PGP T +L L+ ++ R+P + + Sbjct: 74 QLGQLVHLDNAAFRAIKAATPGPYTFILKATPEVP-RRLAHPKKRSVGVRIPDSRVVQAI 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + GQ ++ + ++ ++D G + +T+V+ E Sbjct: 133 LHELGEPLLSSTLLLPGQEEPLTEGWLIKEELDHQVDAVVDAGDCDT-VPTTVVDWT-EG 190 Query: 188 KVRILRPGG 196 ++R G Sbjct: 191 TPEVVRVGA 199 >gi|256379000|ref|YP_003102660.1| Sua5/YciO/YrdC/YwlC family protein [Actinosynnema mirum DSM 43827] gi|255923303|gb|ACU38814.1| Sua5/YciO/YrdC/YwlC family protein [Actinosynnema mirum DSM 43827] Length = 206 Score = 149 bits (376), Expect = 7e-34, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 72/195 (36%), Gaps = 4/195 (2%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 A+ +A E + AG IA PT++ Y L N + R+ +I+ + D + Sbjct: 15 RAIDQAVEVVRAGGLIAYPTDSCYALGCQLGNKEGLDRIRQIRNLDDKHHFTLVCRDFAQ 74 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + + A V+ + K PG T +L L KT R+P + L+ Sbjct: 75 LGQFAYVENAAFRAIKAATPGSYTFILSATREVP-RRLLHPKKKTVGVRIPDNAVVQALL 133 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E G PL + Q + + + ++D G +T+V+ + Sbjct: 134 EALGEPLLSSTLLLPDQEEPLVQGWEIKERLDHVVDAVLDSGDCGT-EPTTVVDFSS-GE 191 Query: 189 VRILRPGGLEIETLK 203 +LR G + + Sbjct: 192 AEVLRVGAGDPSRFE 206 >gi|253991647|ref|YP_003043003.1| ribosome maturation factor [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253783097|emb|CAQ86262.1| conserved hypothetical Protein [Photorhabdus asymbiotica] Length = 189 Score = 149 bits (376), Expect = 8e-34, Method: Composition-based stats. Identities = 53/191 (27%), Positives = 76/191 (39%), Gaps = 8/191 (4%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 MS S A L A IA PTE V+GL D + AI L +KKRP LI Sbjct: 1 MSNEASPAFENVLTALKAEKVIAYPTEAVFGLGCDPDSVKAINELLILKKRPWQKGLILI 60 Query: 64 VSDISMVKKHASVDPLSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 + ++ + L+ + WPGP+T V+ S+T T T RV Sbjct: 61 ADNYEQLQPYLDDKLLTAKQKEAMFTCWPGPMTWVIPAKSST--SKWLTGQFSTLAVRVS 118 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 K+L YG PL SAN +G + + ++P I++G + S Sbjct: 119 DHPLVKQLCTFYGKPLVSTSANLNGLEPCRTAEEV-RQQFGDKLP-ILNGDVGGRENPSE 176 Query: 180 IVNVQCEKKVR 190 I + + R Sbjct: 177 IRDALTGELYR 187 >gi|326318414|ref|YP_004236086.1| Sua5/YciO/YrdC/YwlC family protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375250|gb|ADX47519.1| Sua5/YciO/YrdC/YwlC family protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 211 Score = 149 bits (376), Expect = 8e-34, Method: Composition-based stats. Identities = 46/186 (24%), Positives = 76/186 (40%), Gaps = 6/186 (3%) Query: 21 AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80 G +A+PT++ Y L + A+ RL I++ + L D+S V +A VD Sbjct: 26 RGAVLAVPTDSSYALVCQLDDKDAVDRLRRIRQVDEKHHLTLLCRDLSEVSNYARVDNRQ 85 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETY-GHPLAIPS 139 L K PGP T +LD +S KT RVP +L+ G PL + Sbjct: 86 YRLVKQATPGPYTFILDATKEVP-RRVSHPQRKTIGLRVPDRKGLQLLLELHGAPLLATT 144 Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ---CEKKVRILRPGG 196 G+ N + + +I ++D G + +T+V++ R++R G Sbjct: 145 LIPPGETEPMNDPAEIRARFEHQIDAVVDAGACPL-EPTTVVDLTDMATGGDPRVVREGR 203 Query: 197 LEIETL 202 + L Sbjct: 204 GPLSAL 209 >gi|120612352|ref|YP_972030.1| Sua5/YciO/YrdC/YwlC family protein [Acidovorax citrulli AAC00-1] gi|120590816|gb|ABM34256.1| Sua5/YciO/YrdC/YwlC family protein [Acidovorax citrulli AAC00-1] Length = 211 Score = 149 bits (376), Expect = 8e-34, Method: Composition-based stats. Identities = 46/186 (24%), Positives = 76/186 (40%), Gaps = 6/186 (3%) Query: 21 AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80 G +A+PT++ Y L + A+ RL I++ + L D+S V +A VD Sbjct: 26 RGAVLAVPTDSSYALVCQLDDKDAVDRLRRIRQVDEKHHLTLLCRDLSEVSNYARVDNRQ 85 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETY-GHPLAIPS 139 L K PGP T +LD +S KT RVP +L+ G PL + Sbjct: 86 YRLVKQATPGPYTFILDATKEVP-RRVSHPQRKTIGLRVPDRKGLQLLLELHGAPLLATT 144 Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ---CEKKVRILRPGG 196 G+ N + + +I ++D G + +T+V++ R++R G Sbjct: 145 LIPPGETEPMNDPSEIRARFEHQIDAVVDAGACPL-EPTTVVDLTDMATGGDPRVVREGR 203 Query: 197 LEIETL 202 + L Sbjct: 204 GPLSAL 209 >gi|294664410|ref|ZP_06729767.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605816|gb|EFF49110.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 187 Score = 149 bits (376), Expect = 8e-34, Method: Composition-based stats. Identities = 50/190 (26%), Positives = 81/190 (42%), Gaps = 7/190 (3%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 +TD+ L +A L G IA PTE V+GL D R A+ RL EIK+RP +I S Sbjct: 1 MTDTLDLGRAVAALTQGGVIAYPTEAVWGLGCDPRQQAAVMRLLEIKRRPVEKGVIVVAS 60 Query: 66 DISMVKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 + +++ + +P WPGP T +L + T T R+ Sbjct: 61 SVDVLRDWVDIEALEPARRQDVLTSWPGPHTWILPI--TDRAPRWVTGEHDGLAVRISAH 118 Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 L +G PL SAN +G+ + + L ++ I ++DG + + I Sbjct: 119 PVVAALCGAWGAPLVSTSANLAGEPPARS-RAALDPALLATIDGVVDGETGALAQPTQIR 177 Query: 182 NVQCEKKVRI 191 + + + +R Sbjct: 178 DARSGQILRD 187 >gi|253566324|ref|ZP_04843778.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|251945428|gb|EES85866.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] Length = 187 Score = 148 bits (375), Expect = 9e-34, Method: Composition-based stats. Identities = 45/189 (23%), Positives = 86/189 (45%), Gaps = 8/189 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 ++KAC+ + G I PT+TV+G+ D+ N A+RR+YEIK+R ++ V Sbjct: 3 EDIKKACQVMSEGGVILYPTDTVWGIGCDATNEDAVRRVYEIKRRADSKAMLVLVDSPVK 62 Query: 70 VKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 V+ + P ++ L ++ LT++ ++ A + RV F+++L Sbjct: 63 VEFYVQDVPSVAWDLIEVA-DKSLTIIYS--GARNLASNLLAEDGSVGIRVTNEAFSRRL 119 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQC 185 + + + SAN SGQ N +S I + I++ + S+I+ + Sbjct: 120 CQQFRKAIVSTSANVSGQPGAANFNE-ISEEIKSSVDYIVNFRQDDMSRPKPSSIIKLDK 178 Query: 186 EKKVRILRP 194 ++I+R Sbjct: 179 GGVIKIIRE 187 >gi|294625227|ref|ZP_06703867.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292600455|gb|EFF44552.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 187 Score = 148 bits (375), Expect = 9e-34, Method: Composition-based stats. Identities = 50/190 (26%), Positives = 82/190 (43%), Gaps = 7/190 (3%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 +TD+ L +A L G IA PTE V+GL D R A+ RL EIK+RP +I S Sbjct: 1 MTDTVDLGRAVAALTQGGVIAYPTEAVWGLGCDPRQQAAVMRLLEIKRRPVEKGVIVVAS 60 Query: 66 DISMVKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 ++ +++ + +P WPGP T +L + T T R+ Sbjct: 61 NVDVLRDWVDIEALEPARRQDVLTSWPGPHTWILPI--TDRAPRWVTGEHDGLAVRISAH 118 Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 L +G PL SAN +G+ + + L ++ I ++DG + + I Sbjct: 119 PVVAALCGAWGAPLVSTSANLAGEPPARS-RAALDPALLATIDGVVDGETGALAQPTQIR 177 Query: 182 NVQCEKKVRI 191 + + + +R Sbjct: 178 DARSGQILRD 187 >gi|37523508|ref|NP_926885.1| hypothetical protein gll3939 [Gloeobacter violaceus PCC 7421] gi|35214512|dbj|BAC91880.1| gll3939 [Gloeobacter violaceus PCC 7421] Length = 223 Score = 148 bits (375), Expect = 9e-34, Method: Composition-based stats. Identities = 48/200 (24%), Positives = 82/200 (41%), Gaps = 10/200 (5%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 L + + L AG + PT+T Y + D + AI R+ IK+ PL +S Sbjct: 14 PERLGRIVQALRAGAVLLYPTDTTYAIGCDLLHKGAIERVQRIKRLSNDKPLTFLCPSLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKK 126 V +A V + L + PGP T +L +T + L +T RVP + Sbjct: 74 NVATYARVGDDAYRLMRHLLPGPYTFLLP--ATRALPKLVLDPKRRTTGIRVPDHPLCQA 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK-----IGLESTIV 181 L+ G+PL SA + I ++ L ++ + I++ + ST++ Sbjct: 132 LLAGLGNPLISTSARSADGSEI-RYEYELFEALAPVVDGIVELDPPAQDGLLLTQVSTVI 190 Query: 182 NVQCEKKVRILRPGGLEIET 201 ++ E+ V + R G E Sbjct: 191 DLSGEQPVVVRRGLGWERAA 210 >gi|198283581|ref|YP_002219902.1| Sua5/YciO/YrdC/YwlC family protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665262|ref|YP_002426205.1| Sua5/YciO/YrdC/YwlC family protein [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248102|gb|ACH83695.1| Sua5/YciO/YrdC/YwlC family protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517475|gb|ACK78061.1| Sua5/YciO/YrdC/YwlC family protein [Acidithiobacillus ferrooxidans ATCC 23270] Length = 211 Score = 148 bits (375), Expect = 9e-34, Method: Composition-based stats. Identities = 43/195 (22%), Positives = 78/195 (40%), Gaps = 4/195 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 L +A E L G + PT+T Y L + RL I++ + L S IS Sbjct: 14 PRLLAQAAEVLRGGGLLVYPTDTCYALGCTVAARESQERLRRIRQLDLQHDLSLLFSSIS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A +D + L + PGP T +L L+ ++ R+P + L Sbjct: 74 QLTDYAQLDDRAYALLRRILPGPYTFILPATRDVP-RRLADPKKRSIGVRIPASPLCEGL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I G PL + G + + ++ ++ +++ G + ST+V++ + Sbjct: 133 IAELGEPLMSSTLQLPGATAPLTDPDEICKTMGNQVDMVLLSGPGGV-RCSTVVDLL-QW 190 Query: 188 KVRILRPGGLEIETL 202 R+LR G + L Sbjct: 191 PPRLLREGAGDPAAL 205 >gi|307701295|ref|ZP_07638316.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus mulieris FB024-16] gi|307613456|gb|EFN92704.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus mulieris FB024-16] Length = 222 Score = 148 bits (375), Expect = 9e-34, Method: Composition-based stats. Identities = 56/225 (24%), Positives = 89/225 (39%), Gaps = 22/225 (9%) Query: 1 MQIMSITDSNA------LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR 54 M+I + + L + + + IPT+TVYG+A P A++RL K R Sbjct: 1 MEIFRVDPESGALSESELAACEAAVKSSELLVIPTDTVYGIASVPFEPAAVQRLQGAKGR 60 Query: 55 PAMNPLICHVSDISMVKKH----------ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI 104 P VS ++ + A + + LA FWPGPLT++ Sbjct: 61 GEDFPPPVLVSGVAALDSLLERPAIFGAPAPLYEAARRLATAFWPGPLTIIARANPRLGW 120 Query: 105 HPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP 164 + T T R P I PLA+ SANR G T++ ++ ++ Sbjct: 121 NLGKTGG--TIALRQPNHPVALQILEATGPLAVTSANRHGAPPATDISAA-TAYFWDKVA 177 Query: 165 LIIDGGISKIGLESTIVNVQ---CEKKVRILRPGGLEIETLKRAI 206 + +D G S G STIVN+ + I R G + ++ + Sbjct: 178 VYVDAGESPSGQPSTIVNLTKLDAAGQPVIARAGAITAAEIRAVL 222 >gi|306817931|ref|ZP_07451669.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus mulieris ATCC 35239] gi|304649274|gb|EFM46561.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus mulieris ATCC 35239] Length = 222 Score = 148 bits (375), Expect = 9e-34, Method: Composition-based stats. Identities = 56/225 (24%), Positives = 89/225 (39%), Gaps = 22/225 (9%) Query: 1 MQIMSITDSNA------LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR 54 M+I + + L + + + IPT+TVYG+A P A++RL K R Sbjct: 1 MEIFRVDPESGALSESELAACEAAVKSSELLVIPTDTVYGIASVPFEPAAVQRLQGAKGR 60 Query: 55 PAMNPLICHVSDISMVKKH----------ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI 104 P VS ++ + A + + LA FWPGPLT++ Sbjct: 61 SEDFPPPVLVSGVAALDSLLERPAIFGAPAPLYEAARRLATAFWPGPLTIIARANPRLGW 120 Query: 105 HPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP 164 + T T R P I PLA+ SANR G T++ ++ ++ Sbjct: 121 NLGKTGG--TIALRQPDHPVALQILEATGPLAVTSANRHGAPPATDISAA-TAYFWDKVA 177 Query: 165 LIIDGGISKIGLESTIVNVQ---CEKKVRILRPGGLEIETLKRAI 206 + +D G S G STIVN+ + I R G + ++ + Sbjct: 178 VYVDAGESPSGQPSTIVNLTKLDAAGQPVIARAGAITAAEIRAVL 222 >gi|269219483|ref|ZP_06163337.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 848 str. F0332] gi|269211062|gb|EEZ77402.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 848 str. F0332] Length = 205 Score = 148 bits (375), Expect = 9e-34, Method: Composition-based stats. Identities = 38/197 (19%), Positives = 76/197 (38%), Gaps = 8/197 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + K E + +G IA PT++ Y L N + R+ I++ + D + Sbjct: 14 PRLVDKVVEHIRSGEVIAFPTDSGYALGCSLGNKEGLERIRSIRQVGDKHHFTLLCHDFA 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCG-FTKK 126 + + A V L K PGP T +L T D+ + T R+P ++ Sbjct: 74 QLGQLAIVGNSEFRLIKSLTPGPYTFIL--KGTKDVPRISVNPKKHTVGARIPDHRISQA 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 ++E G + S G+ + + + ++++G G +T+++ Sbjct: 132 ILEALGEAMLTSSLILPGEEDPMVNGWEVKDDLGHLVDVVVEG-PCGEGGPTTVLDFVKG 190 Query: 187 KKVRILRPGGLEIETLK 203 +I R G +E ++ Sbjct: 191 ---KIARVGAGSVEGIE 204 >gi|78484365|ref|YP_390290.1| SUA5/yciO/yrdC-like [Thiomicrospira crunogena XCL-2] gi|123556161|sp|Q31JQ7|RIMN_THICR RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|78362651|gb|ABB40616.1| translation factor SUA5 [Thiomicrospira crunogena XCL-2] Length = 186 Score = 148 bits (375), Expect = 9e-34, Method: Composition-based stats. Identities = 46/184 (25%), Positives = 76/184 (41%), Gaps = 10/184 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 ++ A + + G +A PTE VYGL D N A ++L +K+RP +I S I+ ++ Sbjct: 8 IKAAAKLITEGGVLAYPTEAVYGLGCDPLNKDAFQQLLRLKQRPLEKGVILIASSIAQIE 67 Query: 72 KHASVDPLSL-HLAKLFWP---GPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKK 126 + + W P+T VL +T ++ T T RV Sbjct: 68 PFVKLHNQAWTEKVLASWQVLNQPVTWVLP--ATDNVPEWITGGRNTVAVRVTQHPDVMA 125 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L P+ SAN SG+ +T ++ + I+ G + I S I Q + Sbjct: 126 LCNQLNFPIVSTSANLSGEDPVTTMEACCKAF---PALAIMQGNLMGISAPSQIWEAQTQ 182 Query: 187 KKVR 190 K++R Sbjct: 183 KRLR 186 >gi|325272507|ref|ZP_08138885.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas sp. TJI-51] gi|324102368|gb|EGB99836.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas sp. TJI-51] Length = 185 Score = 148 bits (375), Expect = 9e-34, Method: Composition-based stats. Identities = 44/181 (24%), Positives = 67/181 (37%), Gaps = 4/181 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A + AG IA PTE V+GL D N A+ RL +K RP LI +I Sbjct: 7 VQQAAREIRAGAVIAYPTEAVWGLGCDPWNEDAVYRLLALKSRPVDKGLILVADNIRQFD 66 Query: 72 KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130 P WPGP T ++ + T T RV + + Sbjct: 67 FLFEDFPEDWIDRMGSTWPGPNTWLVPHQD--LLPEWVTGQHDTVALRVSDHPVVRELCA 124 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 PL S N G+ + + ++ L++ G + S I N+ + VR Sbjct: 125 LVGPLISTSCNPGGRPAAKTRLRV-EQYFRGQLDLVLGGALGGRKNPSVIRNLATGEVVR 183 Query: 191 I 191 Sbjct: 184 P 184 >gi|118089561|ref|XP_420283.2| PREDICTED: hypothetical protein [Gallus gallus] Length = 687 Score = 148 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 93/205 (45%), Gaps = 9/205 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++ LR + L+ G +PT+TVY LA R+P AI ++Y IK RP P+ +S++ Sbjct: 475 TSGLRTIADLLNTGAVCGVPTDTVYALAASCRHPQAIEKVYRIKDRPQEKPICIFISNLD 534 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLD---LLSTTDIHP--LSTANLKTACFRVPCG 122 ++ A + PL + +PG + ++ L + + RVP Sbjct: 535 QLRAAAPPISPLLWEFMENVYPGGVGCIIKKGEWLKKLGVGEGYSRVGTQDSIMIRVPDL 594 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 + PLAI SAN SG++ T+ ++S + ++ ++ G S + ST+VN Sbjct: 595 TVLVHLIDMTGPLAITSANPSGEVDSTHHDMVIS-RLGHKLEGVLCDGESDEVVASTVVN 653 Query: 183 VQ--CEKKVRILRPGGLEIETLKRA 205 E + ILR G + + + Sbjct: 654 CTRIDESGITILREGCIPASKVMQI 678 >gi|307543967|ref|YP_003896446.1| translation factor [Halomonas elongata DSM 2581] gi|307215991|emb|CBV41261.1| K07566 putative translation factor [Halomonas elongata DSM 2581] Length = 195 Score = 148 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 45/191 (23%), Positives = 76/191 (39%), Gaps = 7/191 (3%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 +++ +++L A L G IA PTE V+GL D + +A+ RL IK+R +I Sbjct: 9 ITMLQASSLDTAVAALREGGVIAYPTEAVWGLGCDPDDTSALTRLLRIKRRDPAKGVILV 68 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWP--GPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 +D+ P P P T ++ L RV Sbjct: 69 AADLDQFSPWLEGLPDERRAVLAE-PQAQPTTWLVP--DNGRAAELVRGEHDKVALRVSD 125 Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 +L +G PL SANR+G+ S + + + E+ ++DG + STI Sbjct: 126 HPLVGELCRAFGGPLVSTSANRAGEPSAMSAEEV-RRVFGDELDALLDGPLGGHTRPSTI 184 Query: 181 VNVQCEKKVRI 191 ++ + +R Sbjct: 185 RDLATGRVLRA 195 >gi|239993915|ref|ZP_04714439.1| putative double-stranded RNA-binding protein with unique protein fold, with YrdC/RibB domain [Alteromonas macleodii ATCC 27126] Length = 201 Score = 148 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 46/188 (24%), Positives = 75/188 (39%), Gaps = 8/188 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 +S + AG I PTE V G+ D N A+ L EIK+RP +I ++ Sbjct: 18 NSPEVDPVVAAFQAGSLIVYPTEAVMGIGCDPDNEAAVNALLEIKQRPVEKGVILIAANY 77 Query: 68 SMVKKHASVDPL-SLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 S + + + + + +F WPGP T +L S+ + T RV Sbjct: 78 SQLLPYVNDNAIRPDRRTDIFSSWPGPNTWLLPKSSSAPV--WLTGKHSKIAVRVTNHPV 135 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 +L G PL SAN +GQ T + ++ + ++G + STI + Sbjct: 136 VVELCNKLGKPLVSTSANLTGQPPATTTEEA--KAVFADSVFYVEGEVGGATKPSTIRDG 193 Query: 184 QCEKKVRI 191 + +R Sbjct: 194 DTAEVIRA 201 >gi|89092294|ref|ZP_01165248.1| hypothetical protein MED92_05763 [Oceanospirillum sp. MED92] gi|89083382|gb|EAR62600.1| hypothetical protein MED92_05763 [Oceanospirillum sp. MED92] Length = 191 Score = 148 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 42/193 (21%), Positives = 77/193 (39%), Gaps = 4/193 (2%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M ++ D + ++ + G IA PTE V+GL D N A+ +L +IK+RP L Sbjct: 1 MSSINNADWWHIHQSVRAIRQGGVIAYPTEAVWGLGCDPYNEDAVLKLLDIKRRPMHKGL 60 Query: 61 ICHVSDISMVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 + +++S + WPGP T +L I + RV Sbjct: 61 VLVAANLSQIDFLLEDLSQDEYDKVTANWPGPFTWILPDKKNR-IPAWIKGDYSAVAVRV 119 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 + L E YG + SAN + + + + ++I ++ G + + Sbjct: 120 SAHSSVRNLTEAYGSFIVSTSANPAAHEPARDSLRV-KTYFGEKIDYLLHGELGDSAQPT 178 Query: 179 TIVNVQCEKKVRI 191 I +++ ++ VR Sbjct: 179 QIRDLKSDRLVRA 191 >gi|297822817|ref|XP_002879291.1| hypothetical protein ARALYDRAFT_482017 [Arabidopsis lyrata subsp. lyrata] gi|297325130|gb|EFH55550.1| hypothetical protein ARALYDRAFT_482017 [Arabidopsis lyrata subsp. lyrata] Length = 263 Score = 148 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 60/193 (31%), Positives = 101/193 (52%), Gaps = 10/193 (5%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 ++A E + + IA+PT+T+YG A D+ + A+ R+YEIK R +PL V D+ +K+ Sbjct: 77 QEAIEAIKSDKVIAVPTDTLYGFACDACSLEAVNRIYEIKGRKLTSPLAICVGDVFDIKR 136 Query: 73 HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETY 131 A+ + L L PGP+TLVL ++ + + T RVP C F ++++ Sbjct: 137 VATTNHLPHGLLDSLLPGPVTLVLHRGESSILEKSLNPGIGTIGIRVPDCEFIREVLRGS 196 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 G LA+ SAN SG S V + +++ L++D + ES + V +++ + Sbjct: 197 GSVLALTSANLSGDRSSVCVND--FEKLWQDLQLLMD-----LKFES--LWVLSKQQWQS 247 Query: 192 LRPGGLEIETLKR 204 LR + +TLKR Sbjct: 248 LRSICWKKKTLKR 260 >gi|166713746|ref|ZP_02244953.1| hypothetical protein Xoryp_20475 [Xanthomonas oryzae pv. oryzicola BLS256] Length = 187 Score = 148 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 49/184 (26%), Positives = 77/184 (41%), Gaps = 7/184 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L A L G IA PTE V+GL D R A+ RL EIK+RP +I S + +++ Sbjct: 7 LDNAVATLTQGGVIAYPTEAVWGLGCDPRREAAVLRLLEIKRRPVDKGVIVVTSSVDVLR 66 Query: 72 KHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 +D L+ WPGP T +L + T T R+ L Sbjct: 67 DWVDIDALAPARRQDVLASWPGPHTWILPV--TARAPRWVTGEHDGLAVRISAHPVVAAL 124 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +G PL SAN +G+ + L ++ I ++DG + + + I + + + Sbjct: 125 CAAWGAPLVSTSANLAGEPPARSHA-ALDPALLATIDGVVDGEVGALAQPTRIRDARSGQ 183 Query: 188 KVRI 191 +R Sbjct: 184 ILRD 187 >gi|288924800|ref|ZP_06418737.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella buccae D17] gi|315607819|ref|ZP_07882812.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella buccae ATCC 33574] gi|288338587|gb|EFC76936.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella buccae D17] gi|315250288|gb|EFU30284.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella buccae ATCC 33574] Length = 192 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 52/193 (26%), Positives = 86/193 (44%), Gaps = 7/193 (3%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV- 64 +T ++ A E + G I PT+TV+G+ D+ NP A+ ++Y+IK+R LIC V Sbjct: 1 MTIQEDIKNAVECMRKGGVILYPTDTVWGIGCDATNPEAVAKVYQIKQRDDSKALICLVD 60 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPG--PLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 SD M K ++ ++ L G P T++LD ++ P A + R+ Sbjct: 61 SDARMQKYFRNIPSVAWELVDSTAEGGKPTTIILD--DAVNVAPNLIAEDGSLAVRITYE 118 Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS-KIGLESTI 180 F+K+L + SAN SGQ + N I + + K S+I Sbjct: 119 KFSKELCFRMQKAIVSTSANISGQPAAQNFCDIAPEVVEAVDYVCWSRRQEHKPHTPSSI 178 Query: 181 VNVQCEKKVRILR 193 + + +V I+R Sbjct: 179 IKLGRNGEVTIIR 191 >gi|288941908|ref|YP_003444148.1| Sua5/YciO/YrdC/YwlC family protein [Allochromatium vinosum DSM 180] gi|288897280|gb|ADC63116.1| Sua5/YciO/YrdC/YwlC family protein [Allochromatium vinosum DSM 180] Length = 207 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 73/189 (38%), Gaps = 3/189 (1%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +R+A E L G I PT++ Y L +A+ R+ I++ + D+S Sbjct: 14 PRLIRRAVEILLEGGVIVYPTDSSYALGCQIGEKSAMERIRRIRRLDDKHNFTLVCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A +D + + K PG T + + L K RVP + L Sbjct: 74 EIASYAKIDDQAYRMLKSLTPGAYTFIHEATKQVP-RRLLHPKRKAIGLRVPDNEICRAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + P+ + + + ++ K + LIIDGG + +T+V++ + Sbjct: 133 LGELDQPILSTTLILPDHDEPLTDPYDMREALDKHVDLIIDGGFCGL-EPTTVVDMTADP 191 Query: 188 KVRILRPGG 196 + R G Sbjct: 192 PALVRRGKG 200 >gi|124805452|ref|XP_001350444.1| conserved Plasmodium protein [Plasmodium falciparum 3D7] gi|23496566|gb|AAN36124.1| conserved Plasmodium protein [Plasmodium falciparum 3D7] Length = 556 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 61/203 (30%), Positives = 99/203 (48%), Gaps = 12/203 (5%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 + + +K E ++ I IPTETVYGL +S + +++ ++ +K RP +P+I HV +I Sbjct: 13 NEDLRKKLKEHIEGDKLIGIPTETVYGLGGNSLSQRSLQNIFRMKNRPVSDPIISHVYNI 72 Query: 68 SMVKKHASVDPLSLH-----LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 + L+K FWPGPL+++ + + + TA + R+P Sbjct: 73 YQAYDQLYHINIYEKYIIYILSKYFWPGPLSII--AKAKKEAPLILTAYTQFCAVRIPDN 130 Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 T+++I+ P+A PSAN+ IS TN H+ E LI D G +G+EST++ Sbjct: 131 KITREIIKICNTPIAAPSANKFQHISPTNSLHVY-DEFKNEDLLIFDDGQCDVGIESTVL 189 Query: 182 NVQCEKKVRILRPGGLEIETLKR 204 + K RI E LK Sbjct: 190 KIT---KYRINHEDKNTDEVLKE 209 Score = 38.5 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 50/138 (36%), Gaps = 40/138 (28%) Query: 223 PGMLKSHYAPRSQVRLRAIHVNP------------------------REALIRFGNVPIK 258 PG+L +HY+P L I + L+ G+ +K Sbjct: 405 PGLLLTHYSPFVSTYLLDIISCKTIEKENKGELLETNNNVCKKINLNKCVLLDIGSSLLK 464 Query: 259 NIENAIISLN-----LSKTGKLKEAAFNLFNYMKIADDS----GASSIAFS-----SIPN 304 +N + +N L ++K F +++ A+ A +I S S Sbjct: 465 YDKNFLKYINICYDSLEVNERIKYITKQFFLFLRQAERLAIENKADNILISIVNIKSCDE 524 Query: 305 HGLGIAINNRLERAAAPR 322 + L +I +R+ RAA+ + Sbjct: 525 NYL--SIFDRIYRAASGK 540 >gi|329957163|ref|ZP_08297730.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides clarus YIT 12056] gi|328523431|gb|EGF50530.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides clarus YIT 12056] Length = 204 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 49/199 (24%), Positives = 80/199 (40%), Gaps = 9/199 (4%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVS 65 + L++ + L+ G I PT+T+Y + AI R+ ++K P N L Sbjct: 10 NNPADLQQVIDILNDGGIIIYPTDTMYAIGCHGLKERAIERICQLKNIDPKKNNLSIICY 69 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 D+S + ++A D + L K PG T +L+ T P N K R+P Sbjct: 70 DLSSISEYAKFDNNTFKLMKRNLPGAFTFILN---GTVRLPKIFRNRKEVGIRMPDNPII 126 Query: 125 KKLIETYGHPLAIPSANRS--GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 ++L P+ + I ++ + L+IDGGI I STIVN Sbjct: 127 QELARLLDAPIMTTTLPYDENEDIEYCTDPELIDEKFGNIVDLVIDGGIGGIEG-STIVN 185 Query: 183 VQCEKKVRILRPGGLEIET 201 + I+R G ++ Sbjct: 186 CT-NGEAEIVRQGKGRLDE 203 >gi|188993332|ref|YP_001905342.1| Sua5/YciO/YrdC family protein [Xanthomonas campestris pv. campestris str. B100] gi|167735092|emb|CAP53304.1| Sua5/YciO/YrdC family protein [Xanthomonas campestris pv. campestris] Length = 191 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 48/185 (25%), Positives = 78/185 (42%), Gaps = 7/185 (3%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 L A L G IA PTE V+GL D R A+ RL EIK+RP +I S + ++ Sbjct: 10 DLDAAVATLARGGVIAYPTEAVWGLGCDPRQEDAVLRLLEIKRRPVDKGVIVVASGLDVL 69 Query: 71 KKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + + L WPGP T +L + T T + R+ Sbjct: 70 QDWIDIAALGSEQLTAVLAQWPGPHTWILPV--TAQAPRWVTGDHDGLAVRISAHPVVAA 127 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L + +G PL SAN +G+ + + L ++ I ++DG + + + I + + Sbjct: 128 LCKAWGAPLVSTSANLAGEPPARS-RAALDPALLARIDGVLDGEVGGLAQPTPIRDARTG 186 Query: 187 KKVRI 191 + +R Sbjct: 187 QILRD 191 >gi|258648509|ref|ZP_05735978.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella tannerae ATCC 51259] gi|260851274|gb|EEX71143.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella tannerae ATCC 51259] Length = 211 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 46/188 (24%), Positives = 87/188 (46%), Gaps = 6/188 (3%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +R+A E L+ G I PT+T++G+ D+ NP A++R+Y+IK+R LI V + Sbjct: 27 EDIRQAVEVLNRGGVILYPTDTIWGIGCDATNPEAVQRVYDIKRRIDSKALITLVDSEAK 86 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLI 128 ++ + P + + P T+V D + ++ P A + R+ F+++L Sbjct: 87 LQFYVRDVPNAAWDIIDYATRPTTIVYDTV--RNLAPNLLAEDGSVGIRITQEPFSRELC 144 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--GLESTIVNVQCE 186 + + SAN SG+ S +S I + + I ++ S I+ + + Sbjct: 145 ARFRRAIVSTSANVSGEPSAACF-DAISDEIKEAVDYICTSRRNERKPASASAIIKLSFD 203 Query: 187 KKVRILRP 194 V+I+R Sbjct: 204 GTVQIIRQ 211 >gi|166154358|ref|YP_001654476.1| hypothetical protein CTL0392 [Chlamydia trachomatis 434/Bu] gi|166155233|ref|YP_001653488.1| hypothetical protein CTLon_0388 [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335611|ref|ZP_07223855.1| hypothetical protein CtraL_02230 [Chlamydia trachomatis L2tet1] gi|165930346|emb|CAP03832.1| conserved hypothetical protein [Chlamydia trachomatis 434/Bu] gi|165931221|emb|CAP06786.1| conserved hypothetical protein [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 281 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 56/200 (28%), Positives = 92/200 (46%), Gaps = 16/200 (8%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 ++ E + AG A PT+TVYGL V A +RL+ +K R + L +VS + ++ Sbjct: 4 QQIEESIKAGQVFAFPTDTVYGLGVSFHILDADQRLFALKHRSSQKALSVYVSSLEELEA 63 Query: 73 HASVD--PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 A S + + F PGPLTL+ H KT FR+ +++I+ Sbjct: 64 VAQQSLGASSRKIIQKFLPGPLTLITK-------HNNPRFPQKTLGFRIVNHPIVQQIIQ 116 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G P SAN SG S + + ++I +I G IGLEST+++ E+++ Sbjct: 117 KVG-PFLATSANLSGFPSAVSADEVKQDFPEEDIVMI--SGECSIGLESTVID--PEERI 171 Query: 190 RILRPGGLEIETLKRAISVE 209 + R G + I ++ + Sbjct: 172 -VYREGAISIAEIETVLGAP 190 >gi|104779340|ref|YP_605838.1| hypothetical protein PSEEN0027 [Pseudomonas entomophila L48] gi|122401163|sp|Q1I2G9|RIMN_PSEE4 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|95108327|emb|CAK13021.1| conserved hypothetical protein; Sua5/YciO/YrdC/YwlC family protein [Pseudomonas entomophila L48] Length = 185 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 44/187 (23%), Positives = 71/187 (37%), Gaps = 4/187 (2%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + S +++A + AG IA PTE V+GL D N A+ RL +K RP LI Sbjct: 1 MVSSWRVQQAAREVKAGAVIAYPTEAVWGLGCDPWNEDAVYRLLALKSRPVDKGLILIAD 60 Query: 66 DISMVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 +I P WPGP T ++ + T T RV Sbjct: 61 NIRQFDFLFEDFPQDWIDRMSATWPGPNTWLVPHQD--LLPEWVTGQHDTVALRVSDHPQ 118 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + + PL S N +G+ + + + E+ +++ G + S I ++ Sbjct: 119 VRELCALVGPLISTSCNPAGRPAAKSRLRV-EQYFHNELDMVLGGALGGRKNPSLIRDLA 177 Query: 185 CEKKVRI 191 + VR Sbjct: 178 TGEVVRP 184 >gi|167031107|ref|YP_001666338.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas putida GB-1] gi|212288215|sp|B0KF32|RIMN_PSEPG RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|166857595|gb|ABY96002.1| SUA5/yciO/yrdC domain [Pseudomonas putida GB-1] Length = 185 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 44/181 (24%), Positives = 67/181 (37%), Gaps = 4/181 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++A + AG IA PTE V+GL D N A+ RL +K RP LI +I Sbjct: 7 VQQAAREIRAGAVIAYPTEAVWGLGCDPWNEDAVYRLLALKSRPVDKGLILIADNIRQFD 66 Query: 72 KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130 P WPGP T ++ + T T RV + + Sbjct: 67 FLFEDFPEDWIERMGSTWPGPNTWLVPHQD--LLPEWVTGKHDTVALRVTDHPQVRELCA 124 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 PL S N G+ + + ++ L++ G + S I N+ + VR Sbjct: 125 LVGPLISTSCNPGGRPAAKTRLRV-EQYFHGQLDLVLGGALGGRKNPSVIRNLATGEVVR 183 Query: 191 I 191 Sbjct: 184 P 184 >gi|149640125|ref|XP_001515015.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus] Length = 341 Score = 147 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 52/216 (24%), Positives = 91/216 (42%), Gaps = 9/216 (4%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 +++LR + LD G +PT+TVY LA ++ AI ++Y+IK RP P+ +S+ Sbjct: 127 HRTSSLRIIAKLLDDGGVCGVPTDTVYALAASCKHSEAIEKIYKIKDRPQDKPICIFISN 186 Query: 67 ISMVK-KHASVDPLSLHLAKLFWPGPLTLVLDLLS-----TTDIHPLSTANLKTACFRVP 120 + ++ + PL +PG + ++ + RVP Sbjct: 187 LDQLRAANPPFTPLLWDFMARVYPGSIGCIVKKGEWVKKLGVGAGFDRVGTKDSIMIRVP 246 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 + PLAI SAN SG+ T+ + ++S + ++ ++ G S L ST+ Sbjct: 247 DQTVMVHLVEMTGPLAITSANPSGESDSTHHEMVIS-RLGHKLEGVLCDGESDEVLASTV 305 Query: 181 VNVQ--CEKKVRILRPGGLEIETLKRAISVELEYCV 214 VN E + ILR G + + + V Sbjct: 306 VNCLRIEEGTITILREGCVSAAKVMQIFEQAKSRAV 341 >gi|315223600|ref|ZP_07865454.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga ochracea F0287] gi|314946381|gb|EFS98376.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga ochracea F0287] Length = 185 Score = 147 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 45/180 (25%), Positives = 84/180 (46%), Gaps = 6/180 (3%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 E L AG I PT+TV+GL D+ NP ++ ++++IK+R LI VSD M++ + + Sbjct: 9 EILKAGKIILYPTDTVWGLGCDATNPESVAKIFQIKQRSESKSLIILVSDTEMLQHYVTD 68 Query: 77 DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPL 135 P + P T++ + A T RV F +++I +G P+ Sbjct: 69 IPPKVLTYLQTLQEPTTIIYSHP--LHLAKNVIAADNTVAIRVVQDVFCQQMIADFGKPI 126 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIID--GGISKIGLESTIVNVQCEKKVRILR 193 SAN SG+ + +++ I + ++ ++I S ++ + +++ILR Sbjct: 127 VSTSANISGEPTPL-YYQLINPQIIAQCDYVVPYRQDDTQIKNPSRLIRFDTDGEIQILR 185 >gi|320539230|ref|ZP_08038901.1| putative ribosome maturation factor [Serratia symbiotica str. Tucson] gi|320030868|gb|EFW12876.1| putative ribosome maturation factor [Serratia symbiotica str. Tucson] Length = 189 Score = 147 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 47/191 (24%), Positives = 76/191 (39%), Gaps = 8/191 (4%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 M+ ++ L + L IA PTE V+GL D + A+ L +K+R LI Sbjct: 1 MNSEPTSTLASIIDALHNQQVIAYPTEAVFGLGCDPDSEQAVNTLLSLKQRSWEKGLILI 60 Query: 64 VSDISMVKKHASVDPLSL-HLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 +D + + + LS A +F WPGP+T + T T + RV Sbjct: 61 AADYQQLIPYINDSALSEPQRAAIFASWPGPVTWAIPARPET--PRFLTGRFNSLAVRVS 118 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 ++L YG PL SAN S + N + + P ++ G + S Sbjct: 119 AHPLVQQLCRQYGKPLVSTSANFSEREPCRNTNEV-TQQFGTAFP-VLVGKVGGYLNPSE 176 Query: 180 IVNVQCEKKVR 190 I + +++R Sbjct: 177 IRDALSGEQIR 187 >gi|606216|gb|AAA58079.1| ORF_f176 [Escherichia coli str. K-12 substr. MG1655] Length = 176 Score = 147 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 46/171 (26%), Positives = 67/171 (39%), Gaps = 8/171 (4%) Query: 24 PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV---DPLS 80 IA PTE V+G+ D + TA+ RL E+K+RP LI ++ +K + + Sbjct: 8 VIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQLKPYIDDTMLTDVQ 67 Query: 81 LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPS 139 WPGP+T V +TT T + RV L + YG PL S Sbjct: 68 RETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVVALCQAYGKPLVSTS 125 Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 AN SG V + + P ++ G S I + + R Sbjct: 126 ANLSGLPPCRTVDEV-RAQFGAAFP-VVPGETGGRLNPSEIRDALTGELFR 174 >gi|134099760|ref|YP_001105421.1| SUA5/YciO/YrdC/YwlC family protein [Saccharopolyspora erythraea NRRL 2338] gi|291005649|ref|ZP_06563622.1| SUA5/YciO/YrdC/YwlC family protein [Saccharopolyspora erythraea NRRL 2338] gi|133912383|emb|CAM02496.1| SUA5/YciO/YrdC/YwlC family protein [Saccharopolyspora erythraea NRRL 2338] Length = 206 Score = 147 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 32/195 (16%), Positives = 67/195 (34%), Gaps = 4/195 (2%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 A+ + + LD I PT++ + L N I R+ I+ + + + Sbjct: 15 RAIGQVVDILDRDGVIVYPTDSCFALGCRLGNKEGIDRIRSIRDLDERHHFTLVCQNFAQ 74 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLI 128 + + ++ K PG T +L L KT R+P + L+ Sbjct: 75 LGQFVHINNAVFRAVKASTPGSYTFILPATREVP-RRLMHPKKKTVGIRIPDHVAAQALL 133 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 G PL + Q + + + ++D G + +T+++ ++ Sbjct: 134 SEVGEPLVSSTLLLPDQEDPLTQGWEIKELLDHAVDAVVDSGDCGV-EPTTVIDFSGDEP 192 Query: 189 VRILRPGGLEIETLK 203 I+R G + + Sbjct: 193 -EIVRRGAGDTSRFE 206 >gi|47222938|emb|CAF99094.1| unnamed protein product [Tetraodon nigroviridis] Length = 655 Score = 147 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 51/182 (28%), Positives = 84/182 (46%), Gaps = 7/182 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++L+ L+ G IPT+TVY LA +NP AI ++Y IK RPA P+ +S++ Sbjct: 464 TSSLQTIAACLEEGGVCGIPTDTVYALAASCKNPQAIEKIYNIKDRPAEKPVCICISNVE 523 Query: 69 MV-KKHASVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHP--LSTANLKTACFRVPCG 122 + PL + +PG ++ ++ D L + P + RVP Sbjct: 524 QLVAAKPPFSPLLWEFMRNVYPGGISCIISKGDWLLRLGVGPAYDRVGTSDSIMIRVPDH 583 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 + PLAI SAN SG+ T+ ++S + +I ++ G S + ST+VN Sbjct: 584 TVTSHLCDITGPLAITSANPSGEADSTHHDMVIS-RLGHKIQGVLCDGHSNEVVASTVVN 642 Query: 183 VQ 184 Sbjct: 643 CL 644 >gi|126174907|ref|YP_001051056.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica OS155] gi|153001236|ref|YP_001366917.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica OS185] gi|160875910|ref|YP_001555226.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica OS195] gi|217972843|ref|YP_002357594.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica OS223] gi|304411911|ref|ZP_07393522.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica OS183] gi|307303321|ref|ZP_07583076.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica BA175] gi|125998112|gb|ABN62187.1| translation factor SUA5 [Shewanella baltica OS155] gi|151365854|gb|ABS08854.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica OS185] gi|160861432|gb|ABX49966.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica OS195] gi|217497978|gb|ACK46171.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica OS223] gi|304349771|gb|EFM14178.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica OS183] gi|306913681|gb|EFN44103.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica BA175] gi|315268101|gb|ADT94954.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica OS678] Length = 206 Score = 147 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 43/192 (22%), Positives = 73/192 (38%), Gaps = 4/192 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A L AG I PT++ Y L A+ R+ I++ + D+S Sbjct: 14 TRLISQAVAALKAGGVIVYPTDSGYALGCLIGEKDAMTRMARIRQIENDHNFSLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKL 127 + +A VD + + K PGP T + L KT RVP L Sbjct: 74 ELATYAKVDNQAYRILKSCTPGPYTFIFKATKEVP-RRLQNDKKKTIGIRVPDNVIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E PL S + + + ++ +II GG +T++++ + Sbjct: 133 LEALDAPLMSTSLVMPNAEFAESDPEQIRDLLEHQVDVIIHGGYLGE-KPTTVIDMSEDG 191 Query: 188 KVRILRPGGLEI 199 ILR G +I Sbjct: 192 -AEILREGAGDI 202 >gi|69249628|ref|ZP_00605026.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium DO] gi|68194107|gb|EAN08647.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium DO] Length = 120 Score = 147 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 39/101 (38%), Positives = 58/101 (57%), Gaps = 2/101 (1%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ D L++A E L G +A PTETVYGL ++ P A+++++ +K RP NPL Sbjct: 1 METKR-YDETELQEAAEALKEGELVAFPTETVYGLGANALLPNAVKKVFSVKGRPQDNPL 59 Query: 61 ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLS 100 I HV+ VK++ P + + K FWPGPLTL+ + Sbjct: 60 IVHVASFEQVKEYVDNFHPAAEKIVKNFWPGPLTLIFKIKK 100 >gi|226942190|ref|YP_002797263.1| RNA binding yrdC protein [Azotobacter vinelandii DJ] gi|226717117|gb|ACO76288.1| RNA binding yrdC protein [Azotobacter vinelandii DJ] Length = 185 Score = 147 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 42/181 (23%), Positives = 71/181 (39%), Gaps = 4/181 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +R+ + G IA PTE V+GL D N A+RRL +K+RP LI +DI Sbjct: 7 VRQVARAVRRGGVIAYPTEAVWGLGCDPWNADAVRRLLALKRRPQDKGLILVAADIGQFG 66 Query: 72 KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130 P + WPGP T ++ + T + RV + + Sbjct: 67 FLLDDLPSAWRERLAGTWPGPNTWLVPHRG--RLPAWITGRHASVALRVSDHPLVRALCR 124 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 PL SAN +G+ + + + + + ++ G + S I ++ + +R Sbjct: 125 LTGPLVSTSANPAGRPAARSRLRV-EQYFPRRLDAVLGGALGGRRNPSLIRDLASGQVIR 183 Query: 191 I 191 Sbjct: 184 P 184 >gi|297626391|ref|YP_003688154.1| Sua5_yciO_yrdC [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922156|emb|CBL56724.1| Sua5_yciO_yrdC [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 205 Score = 147 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 41/192 (21%), Positives = 79/192 (41%), Gaps = 4/192 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ + + L G IA PT++ + L N I + I+ + L VS+ + Sbjct: 14 ARSIHQVADLLREGAVIAYPTDSGFALGTLFGNKEGIDTMRRIRDLDERHHLSVVVSEFA 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127 + ++ +D K PGP T +L +T ++ KT RVP L Sbjct: 74 QLGRYVDMDNREFRAIKASTPGPFTFIL--RATREVPRSMQHPNKTVGVRVPDHVTALAL 131 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ PL + GQ + + ++ +I ++D G + +T+V++ E+ Sbjct: 132 LDELDEPLVSSTLILPGQEEPMSEGWQIKEALDNDIAAVLDSGDVGH-VPTTVVDLTGEE 190 Query: 188 KVRILRPGGLEI 199 V + R GG Sbjct: 191 PVVVRRGGGKTE 202 >gi|313792079|gb|EFS40180.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL110PA1] gi|315077954|gb|EFT50005.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL053PA2] gi|327453202|gb|EGE99856.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes HL092PA1] Length = 222 Score = 147 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 73/190 (38%), Gaps = 5/190 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +L + + L G IA PT+T Y N A+ R+ ++++ + +S + Sbjct: 30 QRSLNQIVDILHHGGLIAYPTDTGYAFGARLGNKDAVDRIRKLRQLSDKHHFTLVMSQFA 89 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCGF-TKK 126 V ++ +D PG T +L+ +T D+ + KT R P Sbjct: 90 QVGQYVQMDNWVFRAVSAAVPGRYTFILN--ATRDVPKVMLHPRKKTVGVRAPEHVTALA 147 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+E P+ + GQ + + I ++ ++D G + +T+V+ Sbjct: 148 LLEALNEPIVSSTLILPGQDTPMVDGWQVQDEIGDQLDAVLDSGDCGV-EPTTVVDFTSG 206 Query: 187 KKVRILRPGG 196 + V R G Sbjct: 207 EAVVTRRGAG 216 >gi|225851215|ref|YP_002731449.1| Sua5/YciO/YrdC/YwlC family protein [Persephonella marina EX-H1] gi|225646672|gb|ACO04858.1| Sua5/YciO/YrdC/YwlC family protein [Persephonella marina EX-H1] Length = 203 Score = 147 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 52/204 (25%), Positives = 92/204 (45%), Gaps = 7/204 (3%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 I S + +A E+L G + PT+T+YG+ D+ N A+ ++Y +K R P+I + Sbjct: 3 DIKVSKNIEEAAEYLKKGRIVIAPTDTLYGILADALNKDAVEKVYRLKGRTPTKPVIVLI 62 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIH-PLSTANLKTACFRVPC-G 122 + + S KL +T+V+DL + FR+P Sbjct: 63 PQLEFLDLFCVKP--SEREKKLLIHRGITVVIDLQDDCKERFFYLHRGKGSLGFRIPDSD 120 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 K++E PL PSAN G+ ++ +S ++ L IDGG K ST+V Sbjct: 121 QLIKVMERIERPLIAPSANPEGKKPAEDIDQAVS-YFGSKVDLYIDGGTVKGKEPSTVVK 179 Query: 183 VQCEKKVRILRPGGLEIETLKRAI 206 + + + ++R G ++ + +KR + Sbjct: 180 I--DNGITVIREGSIKKDEIKRLL 201 >gi|260905265|ref|ZP_05913587.1| translation factor SUA5 [Brevibacterium linens BL2] Length = 206 Score = 147 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 39/206 (18%), Positives = 79/206 (38%), Gaps = 8/206 (3%) Query: 3 IMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58 +++I N + KA + L G IA PT++ Y L N I R+ I++ + + Sbjct: 4 VLNIHPENPQNRMIEKAVQTLRDGGLIAYPTDSGYALGCALDNKAGIERITRIRQLDSKH 63 Query: 59 PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 D + + + VD + K PGP T ++ + A + R Sbjct: 64 HFTLMCRDFAQLGQFVIVDNSDFRVIKSMTPGPYTFIMKATKEVP-RRMMHAKKHSVGAR 122 Query: 119 VPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 +P L+E G P+ + G + I E+ +I+ G+ + Sbjct: 123 IPQNVTALALVEAMGEPILSSTLLLPGAEDPLTQADEVVEQIGHELDAVIESGV-PGNVP 181 Query: 178 STIVNVQCEKKVRILRPGGLEIETLK 203 +++++ + V + R G ++ + Sbjct: 182 TSVIDFTGREPV-VARVGAGDVSRFE 206 >gi|34541562|ref|NP_906041.1| Sua5/YciO/YrdC/YwlC family protein [Porphyromonas gingivalis W83] gi|34397879|gb|AAQ66940.1| Sua5/YciO/YrdC/YwlC family protein [Porphyromonas gingivalis W83] Length = 191 Score = 147 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 41/184 (22%), Positives = 80/184 (43%), Gaps = 5/184 (2%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 +KA E + G I PT+T++G+ D+ N A++R+Y +K+R ++ + + ++ Sbjct: 11 KKAAEVMRKGGIILYPTDTIWGIGCDATNEEAVQRIYRLKERADSKSMLVLIDSEAKLQG 70 Query: 73 HAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 V L+ L + PLT++ + P A+ + R+ F+ +L Sbjct: 71 LMDEVPELAWDLIE-LTTKPLTIIYPQAK--GVAPALIASDGSLGIRLTRETFSAELCRL 127 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 P+ SAN SGQ S I + + ++ G S+I+ + +V Sbjct: 128 MRVPIVSTSANISGQPSARTFGEIAPAILDGVDYIVECRREEPAGQASSIIRLGTRGEVE 187 Query: 191 ILRP 194 ++R Sbjct: 188 VIRQ 191 >gi|121606166|ref|YP_983495.1| Sua5/YciO/YrdC/YwlC family protein [Polaromonas naphthalenivorans CJ2] gi|120595135|gb|ABM38574.1| Sua5/YciO/YrdC/YwlC family protein [Polaromonas naphthalenivorans CJ2] Length = 211 Score = 147 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 51/198 (25%), Positives = 82/198 (41%), Gaps = 6/198 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + L +A E + G A+PT++ Y L + A L I+ + L D+S Sbjct: 14 ARLLAQAVELIQRGGIAAVPTDSSYALVCQLDDKAASDNLRRIRGVDGKHHLTLLCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKL 127 + +A VD L K PGP T +L+ LS + KT RVP T + L Sbjct: 74 ELANYARVDNKQFRLIKAATPGPYTFILEASKEVP-RRLSHPSRKTIGLRVPDHKTLQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC-- 185 +E +G PL + G+ + ++ + E+ IID G +T+V++ Sbjct: 133 LELHGGPLLATTLIPRGETESISDPQDITGPLEHELAAIIDAGAC-HKEPTTVVDLTTMA 191 Query: 186 -EKKVRILRPGGLEIETL 202 I+R G E+ L Sbjct: 192 DGGDPVIIRQGRGELAAL 209 >gi|307186184|gb|EFN71890.1| YrdC domain-containing protein, mitochondrial [Camponotus floridanus] Length = 248 Score = 147 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 52/187 (27%), Positives = 86/187 (45%), Gaps = 10/187 (5%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A + L G IAIPT+T+YGLA + NP A++RLYEIK+R PL +S++ + Sbjct: 41 AAQLLQQGKIIAIPTDTIYGLAGVAVNPLAVQRLYEIKRRDGSKPLAICLSNVKEIGTWG 100 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHP 134 +D + + + PGP T+ L T+ + +T RVP + + P Sbjct: 101 VLDDVPSGMLECLLPGPCTICLRR--TSALPKSFNPGQETVGIRVPDNKFVRSVAKIVGP 158 Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDG------GISKIGLESTIVNVQCEKK 188 LA+ SAN S + S ++ ++ + + + ST+V++ Sbjct: 159 LALTSANISSEPSSLYPDE--FRALWPKLDGVFHETSNSNKRLESRRVGSTVVDLSTPGY 216 Query: 189 VRILRPG 195 RI+R G Sbjct: 217 YRIVRHG 223 >gi|332283421|ref|YP_004415332.1| putative translation factor [Pusillimonas sp. T7-7] gi|330427374|gb|AEC18708.1| putative translation factor [Pusillimonas sp. T7-7] Length = 208 Score = 147 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 43/195 (22%), Positives = 80/195 (41%), Gaps = 4/195 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + L++A + L G +A+PT++ Y + + A L ++ + L D++ Sbjct: 14 ARLLKQAGQLLADGGLVAVPTDSSYAVVARLDDRPAADALRRLRGLDERHHLTLLCRDLA 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + A VD K+ PGP T +L+ +S + KT RVP T L Sbjct: 74 EIGHFAKVDNRQYRFLKMATPGPWTFILEATREVP-RRVSHPSRKTIGIRVPDHKVTLAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 IE G PL + + N + ++ +IDGG + +T++++ Sbjct: 133 IEAAGTPLMSTTLIPEDEEDPMNDGQAIYDRYANQLAAVIDGGACVLA-PTTVLDLTGAS 191 Query: 188 KVRILRPGGLEIETL 202 ++R G ++ L Sbjct: 192 P-EVIRRGQGDLSAL 205 >gi|21233184|ref|NP_639101.1| hypothetical protein XCC3756 [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66770124|ref|YP_244886.1| hypothetical protein XC_3826 [Xanthomonas campestris pv. campestris str. 8004] gi|81303924|sp|Q4UQ07|RIMN_XANC8 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|81792557|sp|Q8P4F2|RIMN_XANCP RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|212288259|sp|B0RWR5|RIMN_XANCB RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|21115034|gb|AAM43013.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575456|gb|AAY50866.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. 8004] Length = 187 Score = 147 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 48/185 (25%), Positives = 78/185 (42%), Gaps = 7/185 (3%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 L A L G IA PTE V+GL D R A+ RL EIK+RP +I S + ++ Sbjct: 6 DLDAAVATLARGGVIAYPTEAVWGLGCDPRQEDAVLRLLEIKRRPVDKGVIVVASGLDVL 65 Query: 71 KKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + + L WPGP T +L + T T + R+ Sbjct: 66 QDWIDIAALGSEQLTAVLAQWPGPHTWILPV--TAQAPRWVTGDHDGLAVRISAHPVVAA 123 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L + +G PL SAN +G+ + + L ++ I ++DG + + + I + + Sbjct: 124 LCKAWGAPLVSTSANLAGEPPARS-RAALDPALLARIDGVLDGEVGGLAQPTPIRDARTG 182 Query: 187 KKVRI 191 + +R Sbjct: 183 QILRD 187 >gi|225849196|ref|YP_002729360.1| Sua5/YciO/YrdC/YwlC family protein [Sulfurihydrogenibium azorense Az-Fu1] gi|225643744|gb|ACN98794.1| Sua5/YciO/YrdC/YwlC family protein [Sulfurihydrogenibium azorense Az-Fu1] Length = 201 Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 7/194 (3%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 + I S L A ++ G + T+T+YG+ D+ N A+ ++Y+IK RP P I Sbjct: 9 IHIKISKNLFDAIPYIKEGKLVVAKTDTIYGILADALNKEAVEKIYKIKGRPEDKPFIIL 68 Query: 64 VSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 + +KK DP + + +T++ D+ T + FR+P Sbjct: 69 IPSSHDLKKFNVKPDPQGEKILNI---KGITVIFDIEDPTGEFYYLHRGKNSLAFRIPDD 125 Query: 123 FT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 ++ G P+ PSAN S +++ + I L ID G + + STIV Sbjct: 126 PVFLSFLKELGRPVVAPSANPSDLQPAEDIEKAI-EYFKDSIDLYIDSGKVEKNVPSTIV 184 Query: 182 NVQCEKKVRILRPG 195 V+ K++++R G Sbjct: 185 KVE-NGKIKVIREG 197 >gi|71908079|ref|YP_285666.1| Sua5/YciO/YrdC/YwlC [Dechloromonas aromatica RCB] gi|71847700|gb|AAZ47196.1| Sua5/YciO/YrdC/YwlC [Dechloromonas aromatica RCB] Length = 208 Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 43/193 (22%), Positives = 76/193 (39%), Gaps = 4/193 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 L +A EF+ G +A+PT++ Y L + A+ ++ I++ + L V D+S Sbjct: 14 QRLLAQAAEFIRNGAIVALPTDSCYALGCHLGDKEALDKIRLIRQMDDRHHLTLMVRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKL 127 + A VD L K PG T +L+ + KT RVP L Sbjct: 74 EIAHFARVDNAQYRLLKAATPGSYTFILEGSKELP-RRVMHPKRKTIGLRVPDHPVALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E PL + G + + ++ LI+D G +T++++ Sbjct: 133 LEELNEPLLTTTLQLPGDEFPLTEGWEIQDRLEDQLELILDAGPCGT-EPTTVIDLTGSA 191 Query: 188 KVRILRPGGLEIE 200 ++R G +E Sbjct: 192 P-ELIRAGRGPLE 203 >gi|313617107|gb|EFR89657.1| Sua5/YciO/YrdC/YwlC family protein [Listeria innocua FSL S4-378] Length = 151 Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 46/150 (30%), Positives = 70/150 (46%), Gaps = 14/150 (9%) Query: 191 ILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE- 247 ILRPGG+ IE +++ I ET P++PGM +HYAP++ V L + Sbjct: 2 ILRPGGITIEQIEQVIGTVDLSTNSTTETEKPKAPGMKYTHYAPKAPVYLVEGSSQFWQS 61 Query: 248 -------ALIRFGNVPIKNIENAII-SLNLSKTGKLK---EAAFNLFNYMKIADDSGASS 296 A + G + K + + + S + TG +K E A +L+ ++ D + Sbjct: 62 EINKVEIAGKKLGILATKELTSKLATSAVIQSTGSIKAMGEIATSLYKGLRAFDHADVDI 121 Query: 297 IAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326 I P LG AI NRLE+AA R S+ Sbjct: 122 IFAEVYPETELGAAIMNRLEKAAGNRRISE 151 >gi|226355747|ref|YP_002785487.1| translation factor (SUA5) [Deinococcus deserti VCD115] gi|226317737|gb|ACO45733.1| putative translation factor (SUA5) [Deinococcus deserti VCD115] Length = 214 Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 59/198 (29%), Positives = 89/198 (44%), Gaps = 10/198 (5%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 A+ A L G +A P+ETV+GLA ++P A+ RLY +K R A P+ + + Sbjct: 18 TAVHNAAAALLRGAVVAYPSETVWGLAAHPQHPQAVERLYALKGRAADKPVQVSCAGVDE 77 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 +A P LA WPGPLTLV + P A RVP L+ Sbjct: 78 ALHYAVPSPALSALAP-LWPGPLTLV---TAARPECPAYLAPHGQVGLRVPDHPVALALL 133 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 + G LA S NRSG + + ++S + + DGG G+ ST+V + Sbjct: 134 QLSGGALATTSCNRSGLPAARTWEEAVTSGLGDLVLP--DGGHPAAGIASTVVLLPAG-- 189 Query: 189 VRILRPGGLEIETLKRAI 206 ++R G + TL++ + Sbjct: 190 -EVVREGAVSAVTLRQLL 206 >gi|330957382|gb|EGH57642.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 185 Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 47/187 (25%), Positives = 75/187 (40%), Gaps = 4/187 (2%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + S +++A + + AG IA PTE V+GL D + A+ RL IK RP LI Sbjct: 1 MVSSWRVQQAAQDIRAGAVIAYPTEAVWGLGCDPWDEEAVYRLLAIKSRPVEKGLILIAD 60 Query: 66 DISMVK-KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 +I L L WPGP T ++ + T +T RV T Sbjct: 61 NIRQFDFLFEDFPELWLDRMASTWPGPNTWLVPHQ--NLLPEWITGIHETVALRVTDHPT 118 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + + PL SAN +G+ + + + +I ++ G + S I ++ Sbjct: 119 VRELCALVGPLISTSANPAGRPAARSRLRV-EQYFRGQIDGVLGGSLGGRRNPSVIRDIA 177 Query: 185 CEKKVRI 191 + VR Sbjct: 178 TGQVVRA 184 >gi|285019625|ref|YP_003377336.1| translation factor (sua5) protein [Xanthomonas albilineans GPE PC73] gi|283474843|emb|CBA17342.1| putative translation factor (sua5) protein [Xanthomonas albilineans] Length = 186 Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 45/185 (24%), Positives = 71/185 (38%), Gaps = 7/185 (3%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 +L +A L G IA PTE V+GL D + A+ RL IK+RP LI +++ + Sbjct: 5 SLSQAVTALRQGGIIAYPTEAVWGLGCDPYDAAAVNRLLRIKQRPVEKGLIVVAAELDAL 64 Query: 71 KKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + L WPGP T +L +T P T R+ Sbjct: 65 HPLLDLSALPPERLAAVLASWPGPHTWILP--ATAQAPPWITGTHNGIAVRISAHPLVTA 122 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L + L SANR G+ + L + E+ ++ G + + I + Sbjct: 123 LCRHWAGALVSTSANRGGEPPARQ-REELDPQLLAELDGLLHGETGGLAQPTPIRDAISG 181 Query: 187 KKVRI 191 + +R Sbjct: 182 EILRA 186 >gi|188995759|ref|YP_001930011.1| hypothetical protein PGN_1895 [Porphyromonas gingivalis ATCC 33277] gi|188595439|dbj|BAG34414.1| conserved hypothetical protein [Porphyromonas gingivalis ATCC 33277] Length = 191 Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 42/184 (22%), Positives = 80/184 (43%), Gaps = 5/184 (2%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 +KA E + G I PT+T++G+ D+ N A+RR+Y +K+R ++ + + ++ Sbjct: 11 KKAAEVMRKGGIILYPTDTIWGIGCDATNEEAVRRIYRLKERADSKSMLVLIDSEAKLQG 70 Query: 73 HAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 V L+ L + PLT++ + P A+ + R+ F+ +L Sbjct: 71 LMDEVPELAWDLIE-LTTKPLTIIYPQAK--GVVPALIASDGSLGIRLTRETFSAELCRL 127 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 P+ SAN SGQ S I + + ++ G S+I+ + +V Sbjct: 128 MRVPIVSTSANISGQPSARTFGEIAPAILDGVDYIVECRREEPAGQASSIIRLGTRGEVE 187 Query: 191 ILRP 194 ++R Sbjct: 188 VIRQ 191 >gi|238898788|ref|YP_002924470.1| predicted ribosome maturation factor [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466548|gb|ACQ68322.1| predicted ribosome maturation factor [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 189 Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 42/192 (21%), Positives = 79/192 (41%), Gaps = 8/192 (4%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 M I ++ + L IA PTE+V+GL D + A+ L +K+RP LI Sbjct: 1 MQIKNNPTFASVLKALKKEQVIAYPTESVFGLGCDPDSQKAVNNLLLLKQRPQKKGLILI 60 Query: 64 VSDISMVKKHASVDPL-SLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 + ++ + + + + + K+F WPG LT V + + + RV Sbjct: 61 AASYQQLQPYINDEQVSAEQREKIFTSWPGHLTWVFPT--SIQTPFWLSGEFNSLAVRVS 118 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 ++L +G PL SAN +GQ + ++ ++ ++ G + S Sbjct: 119 AHPLVRQLCSCFGKPLVSSSANMTGQTPCRTSREVVL-QFGHQL-SVLSGNVGGHMKPSE 176 Query: 180 IVNVQCEKKVRI 191 I + ++ +R Sbjct: 177 IRDALTDRLIRS 188 >gi|120598424|ref|YP_962998.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella sp. W3-18-1] gi|146293497|ref|YP_001183921.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella putrefaciens CN-32] gi|120558517|gb|ABM24444.1| translation factor SUA5 [Shewanella sp. W3-18-1] gi|145565187|gb|ABP76122.1| translation factor SUA5 [Shewanella putrefaciens CN-32] gi|319426802|gb|ADV54876.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella putrefaciens 200] Length = 206 Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 43/192 (22%), Positives = 73/192 (38%), Gaps = 4/192 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + +A L AG I PT++ Y L A+ R+ I++ + D+S Sbjct: 14 ARLISQAVAALKAGGVIVYPTDSGYALGCLIGEKDAMTRMARIRQIENDHNFSLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKL 127 + +A VD + + K PGP T + L KT RVP L Sbjct: 74 ELATYAKVDNQAYRILKSCTPGPYTFIFKATKEVP-RRLQNDKKKTIGIRVPDNVIALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E PL S + + + ++ +II GG +T++++ + Sbjct: 133 LEALDAPLMSTSLVMPNAEFAESDPEQIRDLLEHQVDVIIHGGYLGE-KPTTVIDMSEDG 191 Query: 188 KVRILRPGGLEI 199 ILR G +I Sbjct: 192 -AEILREGAGDI 202 >gi|317404846|gb|EFV85219.1| translation factor [Achromobacter xylosoxidans C54] Length = 208 Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 45/195 (23%), Positives = 80/195 (41%), Gaps = 4/195 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 L++A ++L+ G +A+PT++ Y + + A L ++ + L D++ Sbjct: 14 PRLLKQAAQWLNDGGLVAVPTDSSYAVVARLDDKNAADGLRRLRGLDERHHLTLLCRDLA 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + A VD L K PGP T +L+ +S + KT RVP L Sbjct: 74 EIGHFARVDNRQYRLLKAATPGPWTFILEATKEVP-RRVSHPSRKTIGIRVPDHAVMLGL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL + + N + E+ IID G +T++++ + Sbjct: 133 LEQMGAPLLSTTLIPKDETEALNDAEDIRERYAHELAAIIDAGACPHS-PTTVIDLTGAE 191 Query: 188 KVRILRPGGLEIETL 202 V ++R G + TL Sbjct: 192 PV-VVRVGRGDPATL 205 >gi|311107775|ref|YP_003980628.1| Sua5/YciO/YrdC/YwlC family protein [Achromobacter xylosoxidans A8] gi|310762464|gb|ADP17913.1| Sua5/YciO/YrdC/YwlC family protein [Achromobacter xylosoxidans A8] Length = 208 Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 45/195 (23%), Positives = 80/195 (41%), Gaps = 4/195 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 L++A ++L G +A+PT++ Y + + A L ++ + L D++ Sbjct: 14 PRLLKQAAQWLADGGLVAVPTDSSYAVVARLDDKNAADGLRRLRGLDERHHLTLLCRDLA 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + A VD L K PGP T +L+ +S + KT RVP L Sbjct: 74 EIGHFARVDNRQYRLLKAATPGPWTFILEATKEVP-RRVSHPSRKTIGIRVPDHAVMLGL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL + + N + ++ IID G +T++++ E+ Sbjct: 133 LEQVGAPLLSTTLIPKDEAEALNDAEEIRERYDHDLAAIIDAGACPQS-PTTVIDLTSEE 191 Query: 188 KVRILRPGGLEIETL 202 V ++R G + TL Sbjct: 192 PV-VVRVGRGDPATL 205 >gi|229587599|ref|YP_002869718.1| hypothetical protein PFLU0021 [Pseudomonas fluorescens SBW25] gi|229359465|emb|CAY46306.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25] Length = 185 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 46/187 (24%), Positives = 68/187 (36%), Gaps = 5/187 (2%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + L A E + AG IA PTE V+GL D N A+ RL IK R LI Sbjct: 2 VNRWRVLETARE-IRAGAVIAYPTEAVWGLGCDPWNEEAVDRLLAIKNRSVDKGLILVAD 60 Query: 66 DISMVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 +I P WPGP T ++ + T T RV Sbjct: 61 NIRQFDFLFEDFPQDWIDRMASTWPGPNTWLVPHQG--LLPEWVTGVHDTVAVRVTDHPL 118 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + + + PL SAN G+ + + ++ L++ G + S I ++ Sbjct: 119 VRDLCSLVGPLISTSANPQGRPAARTRIRV-EQYFRGQVDLVLGGALGGRKNPSLIRDLV 177 Query: 185 CEKKVRI 191 + VR Sbjct: 178 TGEVVRP 184 >gi|325913835|ref|ZP_08176194.1| translation factor SUA5 [Xanthomonas vesicatoria ATCC 35937] gi|325539910|gb|EGD11547.1| translation factor SUA5 [Xanthomonas vesicatoria ATCC 35937] Length = 187 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 48/185 (25%), Positives = 78/185 (42%), Gaps = 7/185 (3%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 +L A L G IA PTE V+GL D +A+ RL EIK+RP +I S I ++ Sbjct: 6 SLDSAVATLRKGGVIAYPTEAVWGLGCDPAQESAVLRLLEIKRRPVDKGVIVVASGIEVL 65 Query: 71 KKHASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + +D P WPGP T +L + T+ T R+ Sbjct: 66 RGWVDIDALEPARRDEVLASWPGPHTWILPV--TSRAPRWVTGTHDGLAVRISAHPLVVA 123 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L +G PL SAN +G+ + + L ++ I ++ G + + + I + + Sbjct: 124 LCAAWGAPLVSTSANLAGEPPARS-REALDPALLATIDGVLAGDVGGLAQPTPIRDARTG 182 Query: 187 KKVRI 191 + +R Sbjct: 183 QSLRD 187 >gi|289667887|ref|ZP_06488962.1| Sua5/YciO/YrdC family protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 187 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 48/184 (26%), Positives = 76/184 (41%), Gaps = 7/184 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L A L G IA PTE V+GL D R A+ RL EIK+RP +I + +++ Sbjct: 7 LDNAVATLTQGGVIAYPTEAVWGLGCDPRQEAAVMRLLEIKRRPVYKGVIVVAPSVDVLR 66 Query: 72 KHASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 +D P WPGP T +L + T T R+ L Sbjct: 67 DWVDIDALEPARRQDVLASWPGPHTWILPV--TARAPRWVTGEHDGLAVRISTHPVVAAL 124 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +G PL SAN +G+ + + L ++ I ++DG + + + I + + + Sbjct: 125 CAAWGAPLVSTSANLAGEPPARS-RAALDPALLATIDGVVDGEVGTLAQPTQIRDARSGQ 183 Query: 188 KVRI 191 +R Sbjct: 184 ILRD 187 >gi|293606645|ref|ZP_06689000.1| Sua5/YciO/YrdC/YwlC family protein [Achromobacter piechaudii ATCC 43553] gi|292814929|gb|EFF74055.1| Sua5/YciO/YrdC/YwlC family protein [Achromobacter piechaudii ATCC 43553] Length = 208 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 44/195 (22%), Positives = 80/195 (41%), Gaps = 4/195 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 L++A ++L+ G +A+PT++ Y + + A L ++ + L D++ Sbjct: 14 PRLLKQAAQWLNDGGLLAVPTDSSYAVVARLDDKDAADGLRRLRGLDERHHLTLLCRDLA 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + A VD L K PGP T +L+ +S + KT RVP L Sbjct: 74 EIGHFARVDNKQYRLLKAATPGPWTFILEATKEVP-RRVSHPSRKTIGIRVPDHAVMLGL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL + + N + ++ IID G +T++++ + Sbjct: 133 LEQVGAPLLSTTLIPKNETEALNDAEAIRERYDHDLAAIIDAGACPQS-PTTVIDLTSDD 191 Query: 188 KVRILRPGGLEIETL 202 V ++R G + TL Sbjct: 192 PV-VVRVGRGDPATL 205 >gi|222874698|gb|EEF11829.1| predicted protein [Populus trichocarpa] Length = 302 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 64/156 (41%), Gaps = 3/156 (1%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S + +A E L G I PT++ Y L + A+ R+ +I++ P + SD+S Sbjct: 148 SRLINQAVEILRQGGVIVYPTDSGYALGCMIGDKHAMDRIVKIRQLPEGHNFTLVCSDLS 207 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + ++ V+ L K PG T +L L T+ KT RVP L Sbjct: 208 ELSTYSVVNNSVYRLIKNNTPGRYTFILSATKELP-RRLMTSKRKTIGIRVPDNQIALDL 266 Query: 128 IETYGHPLAIPSANRSGQISIT-NVKHILSSSICKE 162 +++ G P+ S G+ T + + + + Sbjct: 267 LKSLGEPILSCSLMLPGEEYTTQSDPEEIRDRLEHQ 302 >gi|289209438|ref|YP_003461504.1| SUA5/yciO/yrdC domain protein [Thioalkalivibrio sp. K90mix] gi|288945069|gb|ADC72768.1| SUA5/yciO/yrdC domain protein [Thioalkalivibrio sp. K90mix] Length = 197 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 48/182 (26%), Positives = 71/182 (39%), Gaps = 5/182 (2%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 + + + G +A PTE V+GL +P I R+ EIK RPA LI + + Sbjct: 12 EIEPVAQCVRDGGVVAYPTEAVFGLGCRPDDPRTIDRILEIKGRPATKGLIVVTDRLDRL 71 Query: 71 KKHASVDPLSLHL-AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLI 128 + P WPGP T +L + T PL + RV T+ L Sbjct: 72 APWLAPLPAERRAEIDASWPGPTTWLLPV--TDACPPLLRGEHDSLAVRVTAHPETRALC 129 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 G PL SANR+G I +++ + I I+ STI + + Sbjct: 130 AAAGSPLVSTSANRAG-IEPCRTWDCVNTQLGAGIDAILQAECGGRTAPSTIRDARTGAW 188 Query: 189 VR 190 +R Sbjct: 189 LR 190 >gi|304413778|ref|ZP_07395222.1| dsRNA-binding putative translation factor [Candidatus Regiella insecticola LSR1] gi|304283869|gb|EFL92263.1| dsRNA-binding putative translation factor [Candidatus Regiella insecticola LSR1] Length = 196 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 41/179 (22%), Positives = 70/179 (39%), Gaps = 3/179 (1%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 ++ + + L G I PT++ Y L A+ R+ I++ N D+S + Sbjct: 17 IKLSVDVLSKGGVIIYPTDSGYALGCRLEEKIAMDRICRIRQHNTTNHFTLVCRDLSELS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGFTKKLIET 130 +A VD + L K PG T +L L KT RV L+ Sbjct: 77 TYAHVDNYAFKLIKNNIPGSYTFILRATKEVP-RRLMNDKRKTIGLRVLTNPIALALMAL 135 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 PL + G + ++ ++ K++ LII GGI + ST++++ V Sbjct: 136 LKEPLMSTTLILQGNDRAESDPEVIKKNLSKQVDLIIHGGILEA-QPSTVIDMTTSAPV 193 >gi|196005123|ref|XP_002112428.1| hypothetical protein TRIADDRAFT_25776 [Trichoplax adhaerens] gi|190584469|gb|EDV24538.1| hypothetical protein TRIADDRAFT_25776 [Trichoplax adhaerens] Length = 219 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 64/210 (30%), Positives = 104/210 (49%), Gaps = 17/210 (8%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 A+ A E L AG IA+PT+T+YG+A ++ P A+ +LY K R NP+ V D++ + Sbjct: 1 AVSAAKESLQAGNIIALPTDTIYGIAALAQLPNAVDKLYNTKGRRRDNPISICVGDVADL 60 Query: 71 KKHASVDP-----LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124 K+ + P + L PGP+TLV ++P N R+P F Sbjct: 61 KRQVHLRPWCSVCVCDALLYDLLPGPVTLVFQRHPV--LNPKLNPNTNLVGIRIPDFPFI 118 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG-ISKIG------LE 177 +++ PLA+ SAN+S +S + S+ ++ +I DGG IS+ G L Sbjct: 119 REVARACDQPLALTSANKSLALSSLAIDE--FQSLWDQLDVIFDGGRISQSGDDQSSRLG 176 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAIS 207 ST++N+ E +I+R G T+K ++ Sbjct: 177 STVINLSVEGYFKIIRKGSAFENTVKLLVN 206 >gi|300776648|ref|ZP_07086506.1| Sua5/YciO/YrdC/YwlC family protein [Chryseobacterium gleum ATCC 35910] gi|300502158|gb|EFK33298.1| Sua5/YciO/YrdC/YwlC family protein [Chryseobacterium gleum ATCC 35910] Length = 182 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 44/186 (23%), Positives = 80/186 (43%), Gaps = 7/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + E L +G I PT+T++G+ D+ N A+ +++EIKKR +I V ++ Sbjct: 1 MEHIIEILKSGGTILYPTDTIWGIGCDATNIEAVNKIFEIKKREKNKSMIILVESEKRLQ 60 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLIET 130 V ++ + P+T+V + + A + R V F KKLI Sbjct: 61 DLVDVPEMAWEIID-LSEKPVTIVYENP--RGLPKELLAEDGSIGIRLVKNDFCKKLITK 117 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL--ESTIVNVQCEKK 188 PL SAN SG+ S I I + ++ K+ S+++ + + + Sbjct: 118 LNRPLVSTSANFSGEKSPLKFSDISQEMID-LVDYAVEEDREKVSKYSGSSVIKIWNDNR 176 Query: 189 VRILRP 194 +++LR Sbjct: 177 IKVLRE 182 >gi|170719276|ref|YP_001746964.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas putida W619] gi|212288216|sp|B1J499|RIMN_PSEPW RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|169757279|gb|ACA70595.1| SUA5/yciO/yrdC domain [Pseudomonas putida W619] Length = 185 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 44/187 (23%), Positives = 70/187 (37%), Gaps = 4/187 (2%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + S +++A + AG IA PTE V+GL D N A+ RL +K RP LI Sbjct: 1 MVSSWRVQQAAREIRAGAVIAYPTEAVWGLGCDPWNEDAVYRLLALKSRPVDKGLILVAD 60 Query: 66 DISMVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 +I P WPGP T ++ + T T RV Sbjct: 61 NIRQFDFLFEDFPEDWIDRMGSTWPGPNTWLVPHQD--LLPEWVTGQHDTVALRVSDHPQ 118 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + + PL S N G+ + + + ++ +++ G + S I N+ Sbjct: 119 VRELCALVGPLISTSCNPGGRPAAKSRLRV-EQYFHGDLDMVLGGALGGRKNPSVIRNLA 177 Query: 185 CEKKVRI 191 + VR Sbjct: 178 TGEIVRP 184 >gi|167718307|ref|ZP_02401543.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei DM98] Length = 141 Score = 146 bits (370), Expect = 3e-33, Method: Composition-based stats. Identities = 45/126 (35%), Positives = 63/126 (50%), Gaps = 4/126 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + A+ A LDAG +A PTETVYGL D++NP A+ R+Y K RPA +P+I H++ S Sbjct: 11 AEAIEDAAARLDAGELVAFPTETVYGLGADAQNPAAVARIYAAKGRPANHPVIVHLAPGS 70 Query: 69 MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 P + L FWPGPLTL+L T I + + R P + Sbjct: 71 DPGYWVEALPADAKKLIDAFWPGPLTLILKR--ATHIPDAVSGGQDSVGLRCPSHPVAQA 128 Query: 127 LIETYG 132 L+ + Sbjct: 129 LLRAFD 134 >gi|159039551|ref|YP_001538804.1| Sua5/YciO/YrdC/YwlC family protein [Salinispora arenicola CNS-205] gi|157918386|gb|ABV99813.1| Sua5/YciO/YrdC/YwlC family protein [Salinispora arenicola CNS-205] Length = 214 Score = 146 bits (370), Expect = 4e-33, Method: Composition-based stats. Identities = 45/205 (21%), Positives = 88/205 (42%), Gaps = 8/205 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIK-KRPAMNPLICHVSDI 67 + A E + G + +PT+TVYG+ D+ P A++ L + K RP P + Sbjct: 12 DRGVAAAIEAVRGGELVVLPTDTVYGVGADAFTPHAVKALLDAKGGRPV--PPPVLIGSR 69 Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126 + + + L + FWPG LT+V++ + T+ T R+P Sbjct: 70 RTLDGLVFRLPRAARDLVEAFWPGALTIVVEHSPSLRWDLGETSG--TVAVRMPLHPVAL 127 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 + P+A+ SAN +G + T + + ++ G + + STIV++ Sbjct: 128 EVLRETGPMAVASANTAGLPAATTA-EAARGQLAYSVRTYLEAGPAVDPVPSTIVDLTGA 186 Query: 187 KKVRILRPGGLEIETLKRAISVELE 211 +++R G + ++ L+ + +E Sbjct: 187 VP-QLVRAGAIGLDRLRDVVPDIVE 210 >gi|145596153|ref|YP_001160450.1| Sua5/YciO/YrdC/YwlC family protein [Salinispora tropica CNB-440] gi|145305490|gb|ABP56072.1| translation factor SUA5 [Salinispora tropica CNB-440] Length = 236 Score = 146 bits (370), Expect = 4e-33, Method: Composition-based stats. Identities = 41/199 (20%), Positives = 85/199 (42%), Gaps = 6/199 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + A + + G + +PT+TVYG+ D+ P A++ L + K P + Sbjct: 34 DRGIAAAIKAIRDGELVVLPTDTVYGIGADAFTPHAVKALLDAKG-GQPVPPPVLIGSRH 92 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 + S+ + L + FWPG LT+V++ + T+ R+P Sbjct: 93 TLDGLVFSLPSAARDLVEAFWPGALTIVVEHSPSLRWDLGETSGR--VAVRMPLHPVALE 150 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + P+A+ SAN +G + T + + ++ G + + STIV++ Sbjct: 151 VLRETGPMAVASANTAGLPAATTA-EAARGQLAYSVRTYLEAGPAVDPVPSTIVDLTGAV 209 Query: 188 KVRILRPGGLEIETLKRAI 206 +++R G ++++ L+ + Sbjct: 210 P-QLIRAGAIDLDRLRDVV 227 >gi|331697833|ref|YP_004334072.1| Sua5/YciO/YrdC/YwlC family protein [Pseudonocardia dioxanivorans CB1190] gi|326952522|gb|AEA26219.1| Sua5/YciO/YrdC/YwlC family protein [Pseudonocardia dioxanivorans CB1190] Length = 206 Score = 146 bits (370), Expect = 4e-33, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 69/195 (35%), Gaps = 4/195 (2%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 A+ + E + IA PT++++ L N I R+ EI+ + D + Sbjct: 15 RAITQVVEMVREDGLIAYPTDSLFALGCRLGNAEGIARIREIRHLDDKHHFTLVCRDFAQ 74 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + + +V K PG T +L L KT R+P + L+ Sbjct: 75 LGQFVTVSNSLFRTLKAATPGSYTFILPATREVP-RRLLHPKKKTVGVRIPEHTVVRALL 133 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 + G PL S + + + + ++D G + +T+++ + Sbjct: 134 DELGEPLLSSSLLLPDEPEPLTQGWEIKERLDHLVDAVVDSGECGV-EPTTVIDFSGPEP 192 Query: 189 VRILRPGGLEIETLK 203 I+R G + + Sbjct: 193 -EIVRRGAGPTDLFE 206 >gi|302867807|ref|YP_003836444.1| Sua5/YciO/YrdC/YwlC family protein [Micromonospora aurantiaca ATCC 27029] gi|315505789|ref|YP_004084676.1| sua5/ycio/yrdc/ywlc family protein [Micromonospora sp. L5] gi|302570666|gb|ADL46868.1| Sua5/YciO/YrdC/YwlC family protein [Micromonospora aurantiaca ATCC 27029] gi|315412408|gb|ADU10525.1| Sua5/YciO/YrdC/YwlC family protein [Micromonospora sp. L5] Length = 206 Score = 146 bits (370), Expect = 4e-33, Method: Composition-based stats. Identities = 38/196 (19%), Positives = 73/196 (37%), Gaps = 4/196 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +R+ + L A IA PT++ Y L N + R+ EI++ +P +D + Sbjct: 14 PRVIRQVVDLLRADGVIAYPTDSCYALGCRIGNRDGVERIREIRRLDDRHPFTLMCADFA 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + + K PG T +L + L + RVP T+ L Sbjct: 74 QLGQFVKLSNAVFRQVKSVIPGSYTFLLPATAEVP-RRLQDPRRRVVGARVPRHTVTQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + G+ + + + ++D G + +T+V++ + Sbjct: 133 LAELGEPLLTSTLLLPGEDEPMTQGWEIKERLDHLVDAVVDAGDCGL-EPTTVVDLSGPE 191 Query: 188 KVRILRPGGLEIETLK 203 ILR G + + Sbjct: 192 P-EILRRGAGDPARFE 206 >gi|15595220|ref|NP_248712.1| hypothetical protein PA0022 [Pseudomonas aeruginosa PAO1] gi|107099015|ref|ZP_01362933.1| hypothetical protein PaerPA_01000023 [Pseudomonas aeruginosa PACS2] gi|116053742|ref|YP_788177.1| hypothetical protein PA14_00240 [Pseudomonas aeruginosa UCBPP-PA14] gi|218888768|ref|YP_002437632.1| putative translation factor [Pseudomonas aeruginosa LESB58] gi|254237736|ref|ZP_04931059.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|254243134|ref|ZP_04936456.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|296386495|ref|ZP_06875994.1| putative translation factor [Pseudomonas aeruginosa PAb1] gi|313111455|ref|ZP_07797257.1| putative translation factor [Pseudomonas aeruginosa 39016] gi|81542151|sp|Q9I7A5|RIMN_PSEAE RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|122262123|sp|Q02V59|RIMN_PSEAB RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|9945841|gb|AAG03412.1|AE004441_13 conserved hypothetical protein [Pseudomonas aeruginosa PAO1] gi|115588963|gb|ABJ14978.1| putative translation factor [Pseudomonas aeruginosa UCBPP-PA14] gi|126169667|gb|EAZ55178.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|126196512|gb|EAZ60575.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|218768991|emb|CAW24749.1| putative translation factor [Pseudomonas aeruginosa LESB58] gi|310883759|gb|EFQ42353.1| putative translation factor [Pseudomonas aeruginosa 39016] Length = 185 Score = 146 bits (370), Expect = 4e-33, Method: Composition-based stats. Identities = 42/178 (23%), Positives = 66/178 (37%), Gaps = 4/178 (2%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A + G IA PTE V+GL D N A+ RL +K RP LI ++I + Sbjct: 10 AARVVREGGVIAYPTEAVWGLGCDPWNEDAVYRLLALKARPVEKGLIVVAANIHQLDFLL 69 Query: 75 SVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGH 133 P WPGP T ++ + T + RV + + Sbjct: 70 EDLPDVWLDRLAGTWPGPNTWLVPHQE--RLPEWVTGVHDSVAVRVTDHPLVQELCHLTG 127 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 PL SAN +G+ + + E+ I+ G + S I ++ + +R Sbjct: 128 PLISTSANPAGRPAARTRLRV-EQYFHDELDAILGGALGGRRNPSLIRDLVTGQVIRP 184 >gi|196019468|ref|XP_002118987.1| hypothetical protein TRIADDRAFT_35031 [Trichoplax adhaerens] gi|190577439|gb|EDV18528.1| hypothetical protein TRIADDRAFT_35031 [Trichoplax adhaerens] Length = 185 Score = 146 bits (370), Expect = 4e-33, Method: Composition-based stats. Identities = 58/185 (31%), Positives = 91/185 (49%), Gaps = 5/185 (2%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 I IPT+T+Y L+ D+ N AI+++Y+IK+R L +S+I M + +A+ L+LA Sbjct: 1 ICIPTDTIYALSCDATNIEAIQKIYKIKQRALDKTLPMFMSNIKMARLYANFYKKELNLA 60 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRS 143 FWPG LTLV + +T P N + RVP + + ++ P+ SAN S Sbjct: 61 DKFWPGALTLVSRIKNTHKNLPNLLKNNQKVAIRVPKNKLIQSVCQSINKPIIATSANIS 120 Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIG---LESTIVNVQCEKKVRILRPGGLEIE 200 Q +I ++ I+ ++ LII STI+ +K RILR G + + Sbjct: 121 NQKNINSLDEIIKE-FENKVNLIIKDNRELSDNCLTASTIIEFTNNEKYRILRKGVISKK 179 Query: 201 TLKRA 205 L Sbjct: 180 ELDNI 184 >gi|146305099|ref|YP_001185564.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas mendocina ymp] gi|212288213|sp|A4XNB6|RIMN_PSEMY RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|145573300|gb|ABP82832.1| translation factor SUA5 [Pseudomonas mendocina ymp] Length = 185 Score = 146 bits (370), Expect = 4e-33, Method: Composition-based stats. Identities = 41/187 (21%), Positives = 72/187 (38%), Gaps = 4/187 (2%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + + +++A + G IA PTE V+GL D N A+ RL +K+RP LI Sbjct: 1 MASNWQVQQAARVVCEGGVIAYPTEAVWGLGCDPWNEVAVDRLLALKERPVHKGLILVAD 60 Query: 66 DISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 DI P WPGP T ++ + T + RV Sbjct: 61 DIEQFDFLLDDLPAIWQERLAASWPGPNTWLVPHQD--RLPAWITGVHDSVALRVSDHPL 118 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + + PL SAN +G+ + + + +++ ++ G + S I +++ Sbjct: 119 VRALCRLTGPLISTSANPAGRPAARSRLRV-EQYFPRQLDKVLGGALGGRKNPSLIRDLR 177 Query: 185 CEKKVRI 191 +R Sbjct: 178 TGDVIRS 184 >gi|213968422|ref|ZP_03396565.1| SUA5/yciO/yrdC family domain protein [Pseudomonas syringae pv. tomato T1] gi|301384290|ref|ZP_07232708.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv. tomato Max13] gi|302060148|ref|ZP_07251689.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv. tomato K40] gi|302130421|ref|ZP_07256411.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213926710|gb|EEB60262.1| SUA5/yciO/yrdC family domain protein [Pseudomonas syringae pv. tomato T1] gi|330876383|gb|EGH10532.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330965119|gb|EGH65379.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 185 Score = 146 bits (370), Expect = 4e-33, Method: Composition-based stats. Identities = 46/187 (24%), Positives = 75/187 (40%), Gaps = 4/187 (2%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + S +++A + + AG IA PTE V+GL D + A+ RL IK RP LI Sbjct: 1 MVSSWRVQQAAQNIRAGAVIAYPTEAVWGLGCDPWDEEAVYRLLAIKSRPVEKGLILIAD 60 Query: 66 DISMVK-KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 +I L L WPGP T ++ + T +T RV T Sbjct: 61 NIRQFDFLFEDFPELWLDRMASTWPGPNTWLVPHQ--NLLPEWITGIHETVALRVTDHPT 118 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + + PL SAN +G+ + + + +I ++ G + S I ++ Sbjct: 119 VRELCALVGPLISTSANPAGRPAARSRLRV-EQYFRGQIDGVLGGSLGGRRNPSVIRDIA 177 Query: 185 CEKKVRI 191 + +R Sbjct: 178 TGQVMRA 184 >gi|330901111|gb|EGH32530.1| SUA5/yciO/yrdC [Pseudomonas syringae pv. japonica str. M301072PT] Length = 185 Score = 146 bits (370), Expect = 4e-33, Method: Composition-based stats. Identities = 46/187 (24%), Positives = 76/187 (40%), Gaps = 4/187 (2%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + +S +++A + + AG IA PTE V+GL D + A+ RL IK RP LI Sbjct: 1 MVNSWRVQQAAQDIRAGAVIAYPTEAVWGLGCDPWDEEAVYRLLAIKSRPVEKGLILIAD 60 Query: 66 DISMVK-KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 ++ L L WPGP T ++ + T +T RV T Sbjct: 61 NMRQFDFLFEDFPELWLDRMASTWPGPNTWLVPHQ--NLLPEWITGIHETVALRVTDHPT 118 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + + PL SAN +G+ + + + +I ++ G + S I ++ Sbjct: 119 VRELCALVGPLISTSANPAGRPAARSRLRV-EQYFRGQIDGVLGGSLGGRRNPSVIRDIA 177 Query: 185 CEKKVRI 191 + VR Sbjct: 178 TAQIVRA 184 >gi|262038853|ref|ZP_06012200.1| Sua5/YciO/YrdC/YwlC family protein [Leptotrichia goodfellowii F0264] gi|261747104|gb|EEY34596.1| Sua5/YciO/YrdC/YwlC family protein [Leptotrichia goodfellowii F0264] Length = 201 Score = 146 bits (370), Expect = 4e-33, Method: Composition-based stats. Identities = 59/201 (29%), Positives = 96/201 (47%), Gaps = 10/201 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 N ++K E L G PT+TVYG+ R ++ ++YEIKKR +I + DISM Sbjct: 3 NEIKKVTEILLEGGVAVFPTDTVYGIGALPR-EKSVIKIYEIKKRDFSKKIIALIEDISM 61 Query: 70 VKKHASVDPLSLHLA----KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-T 124 + + + P ++ K FWPG LT++ + T+ L+T R+P Sbjct: 62 LNRIINETPENIEKISPVLKKFWPGELTVIF--KANTEFTGKFDRELETIGVRIPKNETA 119 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 +I+ G L SAN SG+ ++T + LS I ++ +I G STI+ + Sbjct: 120 LSIIKNTGGILLTTSANISGEEAVTEL-DKLSKEIREKADYVIGDDSKLTGKPSTIIKYE 178 Query: 185 CEKKVRILRPGGLEIETLKRA 205 + +LR G + E +K+A Sbjct: 179 NGN-IELLRKGNISSEDIKKA 198 >gi|331017684|gb|EGH97740.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 185 Score = 146 bits (370), Expect = 4e-33, Method: Composition-based stats. Identities = 46/187 (24%), Positives = 76/187 (40%), Gaps = 4/187 (2%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + S +++A + + AG IA PTE V+GL D + A+ RL IK RP LI + Sbjct: 1 MVSSWRVQQAAQNIRAGAVIAYPTEAVWGLGCDPWDEEAVYRLLAIKSRPVEKGLILIAN 60 Query: 66 DISMVK-KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 +I L L WPGP T ++ + T +T RV T Sbjct: 61 NIRQFDFLFEDFPELWLDRMASTWPGPNTWLVPHQ--NLLPEWITGIHETVALRVTDHPT 118 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + + PL SAN +G+ + + + +I ++ G + S I ++ Sbjct: 119 VRELCALVGPLISTSANPAGRPAARSRLRV-EQYFRGQIDGVLGGSLGGRRNPSVIRDIA 177 Query: 185 CEKKVRI 191 + +R Sbjct: 178 TGQVMRA 184 >gi|224098296|ref|XP_002195429.1| PREDICTED: hypothetical protein [Taeniopygia guttata] Length = 680 Score = 146 bits (370), Expect = 4e-33, Method: Composition-based stats. Identities = 51/199 (25%), Positives = 89/199 (44%), Gaps = 9/199 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++ LR E L+ G +PT+TVY LA ++P AI ++Y IK RP P+ +S++ Sbjct: 468 TSGLRTIAELLNTGAVCGVPTDTVYALAASCKHPQAIEKVYRIKDRPQEKPICIFISNLE 527 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLS-----TTDIHPLSTANLKTACFRVPCG 122 ++ A + PL + +PG + ++ + RVP Sbjct: 528 QLRAAAPPISPLLWEFMENVYPGGIGCIIQKGEWLKKLGVGAGYSRVGTQDSIMIRVPDL 587 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 + PLAI SAN SG++ T+ ++S + ++ ++ G S + ST+VN Sbjct: 588 TVLVHLIDMTGPLAITSANPSGEVDSTHHDMVIS-RLGHKLEGVLCDGESDEVVASTVVN 646 Query: 183 VQ--CEKKVRILRPGGLEI 199 E + I+R G + Sbjct: 647 CTKIDESGITIVREGCIPA 665 >gi|300868277|ref|ZP_07112906.1| translation factor SUA5 [Oscillatoria sp. PCC 6506] gi|300333712|emb|CBN58090.1| translation factor SUA5 [Oscillatoria sp. PCC 6506] Length = 222 Score = 146 bits (370), Expect = 4e-33, Method: Composition-based stats. Identities = 51/194 (26%), Positives = 80/194 (41%), Gaps = 15/194 (7%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L AG + PT+TVY + D +A+ R+ +IK PL +S + ++A V Sbjct: 24 LQAGAIMLYPTDTVYAIGCDLNVKSAVERVRQIKHLSNDKPLTFLCPSLSNIAQYAVVSD 83 Query: 79 LSLHLAKLFWPGPLTLVLDLLSTTDIHPLST-ANLKTACFRVPCG-FTKKLIETYGHPLA 136 + K PGP T +L +T + L KT RVP F L+E G+P+ Sbjct: 84 SGYRMIKRLIPGPYTFLLP--ATKLVPRLVMEPKRKTTGIRVPDQKFCLALLEALGNPII 141 Query: 137 IPSANRSGQISITNV-----------KHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 SA+ + K L S+ K + +I+D STI+++ Sbjct: 142 STSAHITNDDEGKAPAAALATEENFGKAELFDSLEKLVDIIVDDTSETGYQVSTILDLTQ 201 Query: 186 EKKVRILRPGGLEI 199 +K + R G E Sbjct: 202 DKPSIVRRGLGWEA 215 >gi|325981006|ref|YP_004293408.1| Sua5/YciO/YrdC/YwlC family protein [Nitrosomonas sp. AL212] gi|325530525|gb|ADZ25246.1| Sua5/YciO/YrdC/YwlC family protein [Nitrosomonas sp. AL212] Length = 210 Score = 146 bits (370), Expect = 4e-33, Method: Composition-based stats. Identities = 35/193 (18%), Positives = 75/193 (38%), Gaps = 4/193 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +++A + G I PT++ Y L + A+ R+ I++ + +++ Sbjct: 14 ARLIKQAVAIVQKGGIIVYPTDSCYALGCHLGDKDAMTRIRTIRQVDERHHFTLVCRNLT 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A VD L K PG T +L + T R+P L Sbjct: 74 EISNYAKVDNSQYRLLKATTPGSYTFILQATREVP-RRMQHPKRNTIGLRIPDHPVVLAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL + N + + ++ L++D G I + +T++++ + Sbjct: 133 LEELGEPLLSSTLILPDDDYPLNDAEEIRERLEHQVELVMDAGSCGIDM-TTVIDLTTDV 191 Query: 188 KVRILRPGGLEIE 200 ++R G ++ Sbjct: 192 PA-LVRQGKGSLD 203 >gi|91774703|ref|YP_544459.1| SUA5/yciO/yrdC-like protein [Methylobacillus flagellatus KT] gi|123380628|sp|Q1H4G9|RIMN_METFK RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|91708690|gb|ABE48618.1| SUA5/yciO/yrdC-like protein [Methylobacillus flagellatus KT] Length = 180 Score = 146 bits (370), Expect = 4e-33, Method: Composition-based stats. Identities = 47/176 (26%), Positives = 68/176 (38%), Gaps = 6/176 (3%) Query: 18 FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASV 76 FL +G IA PTE+ +GL D N A++RL IK RP LI S ++K A V Sbjct: 9 FLRSGGVIAYPTESCFGLGCDPTNHRALKRLLRIKGRPQRKGLIVIAQHFSQLQKLIAPV 68 Query: 77 DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPL 135 P WPGP T ++ ++ L + RV L G L Sbjct: 69 TPEQKQRMFTRWPGPHTWLVP--ASRRCPALLRGRHTSLAVRVTANPLAANLCRHAGMAL 126 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 SAN +G++ + + ++ G STI ++ VR Sbjct: 127 VSTSANHNGRVPAKTAREC--HRLFGGRVKVLPGRTGGASKPSTIQDLITGAIVRP 180 >gi|94987331|ref|YP_595264.1| hypothetical protein LI0889 [Lawsonia intracellularis PHE/MN1-00] gi|94731580|emb|CAJ54943.1| conserved hypothetical protein [Lawsonia intracellularis PHE/MN1-00] Length = 210 Score = 146 bits (370), Expect = 4e-33, Method: Composition-based stats. Identities = 55/197 (27%), Positives = 92/197 (46%), Gaps = 6/197 (3%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRN-PTAIRRLYEIKKRPAMNPLICHVSDISM 69 +L++A F++ G I PTET +GL N I++++ K+R PL + + Sbjct: 6 SLKEAVNFINQGKLIIFPTETFFGLGCKIFNNEDTIQQIFIAKQRAINMPLPLIIGNWEQ 65 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI- 128 + A V + L + FWPG L++VL+ + +I P TA+ + R+ K I Sbjct: 66 LTITAEVPQIIYPLLQHFWPGALSIVLN--AKKNISPYITASTQKVAVRLSSHPIAKEIA 123 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID-GGISKIGLESTIVNVQCEK 187 + G P+ SAN + +T + L + I IID I GL ST++ + Sbjct: 124 DLVGEPIIATSANINKNPPVTKITQ-LDIRLYPYIEGIIDIPPIPTGGLPSTLIELHPNN 182 Query: 188 KVRILRPGGLEIETLKR 204 + ILR G ++ +K Sbjct: 183 TISILREGIIKSNKVKE 199 >gi|319785842|ref|YP_004145317.1| SUA5/yciO/yrdC domain [Pseudoxanthomonas suwonensis 11-1] gi|317464354|gb|ADV26086.1| SUA5/yciO/yrdC domain [Pseudoxanthomonas suwonensis 11-1] Length = 187 Score = 146 bits (369), Expect = 4e-33, Method: Composition-based stats. Identities = 48/183 (26%), Positives = 75/183 (40%), Gaps = 7/183 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + A + L G IA PTE V+GL D N A+ RL IK+RP +I + + V+ Sbjct: 7 IASAADLLRRGGVIAYPTEAVWGLGCDPGNEAAVLRLLRIKQRPVEKGMIVVAAGLEAVR 66 Query: 72 KHASVDPLSLHLA---KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + L WPGP T + ST P T + ++ R+ L Sbjct: 67 PWLDLAQLPAGRMTEVAASWPGPNTWAIP--STPLAPPWVTGSHRSLAVRISAHPVVVAL 124 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 E +G P+ SAN +GQ + + L ++ I ++ G + + I N Sbjct: 125 CEAFGGPVVSTSANLAGQPPAYS-REELDPALLAGIDGVVGGETGGLERPTPIRNALDGA 183 Query: 188 KVR 190 +R Sbjct: 184 VLR 186 >gi|302791063|ref|XP_002977298.1| hypothetical protein SELMODRAFT_176163 [Selaginella moellendorffii] gi|300154668|gb|EFJ21302.1| hypothetical protein SELMODRAFT_176163 [Selaginella moellendorffii] Length = 297 Score = 146 bits (369), Expect = 4e-33, Method: Composition-based stats. Identities = 50/198 (25%), Positives = 82/198 (41%), Gaps = 16/198 (8%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L + L G +PT+T+Y + D N AI RLY IK A PL + Sbjct: 86 LDQVVSLLQDGGVGVVPTDTIYAIVCDLHNRAAIERLYRIKDMDAKKPLSILCRSFQDID 145 Query: 72 KHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLST----------ANLKTACFRVP 120 K+ + P S +A+ PGP T +L ++ D+ T A K+ R+P Sbjct: 146 KYTTGFPTSFFRVARQCLPGPYTFILP--ASKDMPKQCTRFGGSVAASYAPRKSVGVRIP 203 Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 +++ HPL S R I++ + + I+DGG +++ ST Sbjct: 204 DDAVWREMAGQLEHPLLCTSVRRPADDEWMLDPAIIADTYGS-VDFIVDGG-TRVANPST 261 Query: 180 IVNVQCEKKVRILRPGGL 197 +V++ V + R G+ Sbjct: 262 VVDMTGTMPVVLRRGKGV 279 >gi|237801643|ref|ZP_04590104.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024502|gb|EGI04558.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 185 Score = 146 bits (369), Expect = 4e-33, Method: Composition-based stats. Identities = 46/187 (24%), Positives = 75/187 (40%), Gaps = 4/187 (2%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + S +++A + + AG IA PTE V+GL D + A+ RL IK RP LI Sbjct: 1 MVSSWRVQQAAQDIRAGAVIAYPTEAVWGLGCDPWDEEAVYRLLAIKSRPVEKGLILIAD 60 Query: 66 DISMVK-KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 +I L L WPGP T ++ + T +T RV T Sbjct: 61 NIRQFDFLFEDFPELWLDRMASTWPGPNTWLVPHQ--NLLPEWITGIHETVALRVTDHPT 118 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + + PL SAN +G+ + + + +I ++ G + S I ++ Sbjct: 119 VRELCALVGPLISTSANPAGRPAARSRLRV-EQYFRGQIDGVLGGSLGGRRNPSVIRDIA 177 Query: 185 CEKKVRI 191 + +R Sbjct: 178 TGQVMRA 184 >gi|239946135|ref|ZP_04698072.1| hypothetical protein SrosN15_34441 [Streptomyces roseosporus NRRL 15998] gi|239985789|ref|ZP_04706453.1| hypothetical protein SrosN1_00630 [Streptomyces roseosporus NRRL 11379] gi|239992609|ref|ZP_04713273.1| hypothetical protein SrosN1_35273 [Streptomyces roseosporus NRRL 11379] Length = 206 Score = 146 bits (369), Expect = 5e-33, Method: Composition-based stats. Identities = 37/196 (18%), Positives = 68/196 (34%), Gaps = 4/196 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + L +G +A PT++ Y L N AI R+ I+ + D + Sbjct: 14 PRTIGTVVDSLRSGALVAYPTDSCYALGCQLGNRDAIDRIRAIRNLDDRHHFTLVCHDFA 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKL 127 + + VD K PG T +L L KT R+P + L Sbjct: 74 QLAQFVRVDNDVFRAVKAATPGSYTFILPATKEVP-RQLLHPKKKTVGVRIPDHVVTQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + + + + E+ +ID G +T+++ ++ Sbjct: 133 VSELGEPLLSSTLLLPDEEEPLTQGWEIKERLDHEVDAVIDSGDCGT-EPTTVIDFSGDE 191 Query: 188 KVRILRPGGLEIETLK 203 I+R G + + Sbjct: 192 P-EIVRRGAGDTSRFE 206 >gi|312958123|ref|ZP_07772646.1| SUA5/YciO/YrdC-like probable translation factor [Pseudomonas fluorescens WH6] gi|311287554|gb|EFQ66112.1| SUA5/YciO/YrdC-like probable translation factor [Pseudomonas fluorescens WH6] Length = 185 Score = 146 bits (369), Expect = 5e-33, Method: Composition-based stats. Identities = 46/187 (24%), Positives = 67/187 (35%), Gaps = 5/187 (2%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + L A E AG IA PTE V+GL D N A+ RL IK R LI Sbjct: 2 VNRWRVLETAREI-RAGAVIAYPTEAVWGLGCDPWNEEAVDRLLAIKNRSVDKGLILVAD 60 Query: 66 DISMVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 +I P WPGP T ++ + T T RV Sbjct: 61 NIRQFDFLFEDFPQDWIDRMASTWPGPNTWLVPHQD--LLPEWVTGVHDTVALRVTDHPL 118 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + + + PL SAN G+ + + ++ L++ G + S I ++ Sbjct: 119 VRDLCSLVGPLISTSANPQGRPAARTRIRV-EQYFRGQVDLVLGGALGGRKNPSLIRDLV 177 Query: 185 CEKKVRI 191 + VR Sbjct: 178 TGEVVRP 184 >gi|145594996|ref|YP_001159293.1| Sua5/YciO/YrdC/YwlC family protein [Salinispora tropica CNB-440] gi|145304333|gb|ABP54915.1| translation factor SUA5 [Salinispora tropica CNB-440] Length = 206 Score = 146 bits (369), Expect = 5e-33, Method: Composition-based stats. Identities = 32/196 (16%), Positives = 69/196 (35%), Gaps = 4/196 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 LR+ + G IA PT++ L + + R+ +I++ + D + Sbjct: 14 PRILRQVVGLVRDGGLIAYPTDSCCALGCQLGDRRGLDRIRDIRRLDERHHFTLVCRDFA 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + + L K PG T +L + +T RVP + L Sbjct: 74 QLGQFVQISNAVFRLVKSCIPGSYTFILPATREVP-RRMLHPRKRTVGVRVPDHAVAQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G P+ + G+ + + + ++D G +T+V++ ++ Sbjct: 133 LAELGEPMVSSTLILPGEEEPLTQGWEIKERLDHVLDGVVDAGDCG-KEPTTVVDLSGDE 191 Query: 188 KVRILRPGGLEIETLK 203 +LR G + + Sbjct: 192 P-EVLRRGAGDPSRFE 206 >gi|124267942|ref|YP_001021946.1| hypothetical protein Mpe_A2757 [Methylibium petroleiphilum PM1] gi|124260717|gb|ABM95711.1| conserved hypothetical protein [Methylibium petroleiphilum PM1] Length = 209 Score = 146 bits (369), Expect = 5e-33, Method: Composition-based stats. Identities = 48/189 (25%), Positives = 81/189 (42%), Gaps = 3/189 (1%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 L++A + L G AIPT++ Y L + A L I+ + L D+S Sbjct: 14 PRLLKQAVQILHGGGIAAIPTDSSYALVCHLDDKAAAESLRRIRGVDDKHHLTLLCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD L KL PGP T +L+ +S + +T RVP T+ L Sbjct: 74 ELANYARVDNRQYRLLKLGTPGPYTFILEATKEVP-RRVSHPSRRTIGLRVPEHAVTQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL + + N H + K++ I+D G + +T++++ ++ Sbjct: 133 LELLGQPLLATTLIPPNEAEALNDPHEIRQRFEKQLQAIVDAGACPM-QPTTVIDLSGDE 191 Query: 188 KVRILRPGG 196 V + R G Sbjct: 192 TVLVRRGSG 200 >gi|284007497|emb|CBA72979.1| dsRNA-binding protein [Arsenophonus nasoniae] Length = 206 Score = 146 bits (369), Expect = 5e-33, Method: Composition-based stats. Identities = 41/196 (20%), Positives = 77/196 (39%), Gaps = 4/196 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + L+ G I PT++ Y + N A+ ++ +++ + + ++S Sbjct: 14 PRLISQCVNILNKGGIIVYPTDSGYAIGCKLDNKNALTQICRLRQLDSRHNFTLMCRNLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + ++A +D + K PG T +L + KT R+P K L Sbjct: 74 EIAEYAYLDNPVFRMIKNSTPGHYTFILRATKEVP-RRIMNKKRKTIGIRLPSNPIAKDL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL S G + + S I +++ LII+GG + +ST V E Sbjct: 133 LNGIGEPLLSTSLILPGDDFAQSSAEEIESLIGEQVDLIINGGY--LSEKSTTVVDLTES 190 Query: 188 KVRILRPGGLEIETLK 203 I+R G + + Sbjct: 191 TPNIIRVGMGSLTPFE 206 >gi|332139435|ref|YP_004425173.1| putative double-stranded RNA-binding protein with unique protein fold, with YrdC/RibB domain [Alteromonas macleodii str. 'Deep ecotype'] gi|327549457|gb|AEA96175.1| putative double-stranded RNA-binding protein with unique protein fold, with YrdC/RibB domain [Alteromonas macleodii str. 'Deep ecotype'] Length = 201 Score = 146 bits (369), Expect = 5e-33, Method: Composition-based stats. Identities = 44/188 (23%), Positives = 75/188 (39%), Gaps = 8/188 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 +++ + +AG I PTE V G+ D N A+ L +IK+RP +I ++ Sbjct: 18 NASEVDPVVAAFEAGRLIVYPTEAVMGIGCDPDNEAAVNALLDIKQRPVEKGVILIAANY 77 Query: 68 SMVKKHASVDPL-SLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 S + + + + +F WPGP T +L S+ + T RV Sbjct: 78 SQLLPYVDDNAIRPDRRTDIFSSWPGPNTWLLPKSSSAPV--WLTGKHSKIAVRVTNHPV 135 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 L G PL SAN +GQ T+ ++ + ++G + STI + Sbjct: 136 VVALCNKLGKPLVSTSANLTGQPPATDTDEA--KAVFADSVFYVEGKVGGATKPSTIRDG 193 Query: 184 QCEKKVRI 191 + +R Sbjct: 194 DTAEVIRA 201 >gi|116670579|ref|YP_831512.1| translation factor SUA5 [Arthrobacter sp. FB24] gi|116610688|gb|ABK03412.1| translation factor SUA5 [Arthrobacter sp. FB24] Length = 206 Score = 146 bits (369), Expect = 5e-33, Method: Composition-based stats. Identities = 35/188 (18%), Positives = 66/188 (35%), Gaps = 4/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 A+ + E L +G IA PT++ Y L N A+ R+ I++ + D + Sbjct: 14 PRAIGQIVELLRSGGLIAYPTDSCYALGAQLGNREALDRIRAIRQLDNKHHFTLVCKDFA 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + +D K PG T +L L KT R+P + L Sbjct: 74 QLGQFVQIDNDVFRSIKAVTPGSYTFILPATKEVP-KRLLHPKKKTVGVRIPDNAVVQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + + + + + ++D G +T+++ Sbjct: 133 LAELGEPLLSSTLLLPDEEEPLTQGWEIKERLDHVVDAVVDSGDCGA-EPTTVIDFSS-G 190 Query: 188 KVRILRPG 195 ++R G Sbjct: 191 SAEVVRHG 198 >gi|291449585|ref|ZP_06588975.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] gi|291352532|gb|EFE79436.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] Length = 200 Score = 146 bits (369), Expect = 5e-33, Method: Composition-based stats. Identities = 37/196 (18%), Positives = 68/196 (34%), Gaps = 4/196 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + L +G +A PT++ Y L N AI R+ I+ + D + Sbjct: 8 PRTIGTVVDSLRSGALVAYPTDSCYALGCQLGNRDAIDRIRAIRNLDDRHHFTLVCHDFA 67 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKL 127 + + VD K PG T +L L KT R+P + L Sbjct: 68 QLAQFVRVDNDVFRAVKAATPGSYTFILPATKEVP-RQLLHPKKKTVGVRIPDHVVTQAL 126 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + + + + E+ +ID G +T+++ ++ Sbjct: 127 VSELGEPLLSSTLLLPDEEEPLTQGWEIKERLDHEVDAVIDSGDCGT-EPTTVIDFSGDE 185 Query: 188 KVRILRPGGLEIETLK 203 I+R G + + Sbjct: 186 P-EIVRRGAGDTSRFE 200 >gi|288818672|ref|YP_003433020.1| translation factor SUA5 protein [Hydrogenobacter thermophilus TK-6] gi|288788072|dbj|BAI69819.1| translation factor SUA5 protein [Hydrogenobacter thermophilus TK-6] gi|308752261|gb|ADO45744.1| Sua5/YciO/YrdC/YwlC family protein [Hydrogenobacter thermophilus TK-6] Length = 203 Score = 146 bits (369), Expect = 5e-33, Method: Composition-based stats. Identities = 57/208 (27%), Positives = 95/208 (45%), Gaps = 12/208 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+++ AL A + L+ G + PT+T+YGL D+ P A+ RLY I +RP+ P Sbjct: 1 MKVVKAHQKRALPLAAKVLEKGGIVFAPTDTIYGLLADATKPKAVERLYSI-RRPSGRPF 59 Query: 61 ICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I + D ++ P L +T++ +T +H T K+ FRV Sbjct: 60 ILLLPDKYWLEVFDIYAKPTYWDLLDAH----ITVIFYKRTTIPMH--LTRGKKSLAFRV 113 Query: 120 PCG--FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 P F + L+ PL PSAN G +VK + ++ L +D G + G Sbjct: 114 PKRGTFIRDLLLYLDAPLVAPSANPEGMEPAKDVKMAM-DYFGDKVDLYVDAGRIE-GKP 171 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRA 205 STIV + + ++R++R G + + + Sbjct: 172 STIVRLIGKNRIRLVREGSVSFKEILEF 199 >gi|303257826|ref|ZP_07343836.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderiales bacterium 1_1_47] gi|302859429|gb|EFL82510.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderiales bacterium 1_1_47] Length = 207 Score = 146 bits (369), Expect = 5e-33, Method: Composition-based stats. Identities = 47/204 (23%), Positives = 88/204 (43%), Gaps = 5/204 (2%) Query: 1 MQIMSITD-SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 +Q+M + + + +A + L G A+ T+T + L + A+ ++ I++ Sbjct: 5 LQVMPESPQPHRIEQAAKLLTKGQVAAVSTDTGFSLVCRLDDKEALDKIRLIRQLSEKKH 64 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 +S + K A V+ +AK PGP T +L+ LS + KT RV Sbjct: 65 FTLFCDSLSQMSKLARVNNTGYRMAKSVTPGPYTFILEATKEVP-RRLSHPSKKTIGLRV 123 Query: 120 PCGFTK-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P L+E G PL + G+ + + I ++ I+D G S IG ++ Sbjct: 124 PSNKALHALLEKIGEPLVGTTVIMPGEEEPLSSAWEIQDRIGDQLAFILDDGTSVIG-DT 182 Query: 179 TIVNVQCEKKVRILRPGGLEIETL 202 T+V++ ++ ++R G + L Sbjct: 183 TVVDLSGDEP-EVIREGLGSVSAL 205 >gi|58580201|ref|YP_199217.1| hypothetical protein XOO0578 [Xanthomonas oryzae pv. oryzae KACC10331] gi|84622196|ref|YP_449568.1| hypothetical protein XOO_0539 [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188574926|ref|YP_001911855.1| Sua5/YciO/YrdC family protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|75436872|sp|Q5H5D8|RIMN_XANOR RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|123523292|sp|Q2P833|RIMN_XANOM RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|212288246|sp|B2SL46|RIMN_XANOP RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|58424795|gb|AAW73832.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84366136|dbj|BAE67294.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188519378|gb|ACD57323.1| Sua5/YciO/YrdC family protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 187 Score = 146 bits (369), Expect = 5e-33, Method: Composition-based stats. Identities = 49/184 (26%), Positives = 78/184 (42%), Gaps = 7/184 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L A L G IA PTE V+GL D R A+ RL EIK+RP +I S + +++ Sbjct: 7 LDNAVATLTQGGVIAYPTEAVWGLGCDPRQEAAVLRLLEIKRRPVDKGVIVVTSRVDVLR 66 Query: 72 KHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 +D L+ WPGP T +L + T T R+ L Sbjct: 67 DWVDIDALAPARRQDVLASWPGPHTWILPV--TARAPRWVTGEHDGLAVRISAHPVVAAL 124 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +G PL SAN +G+ + + L ++ I ++DG + + + I + + + Sbjct: 125 CAAWGAPLVSTSANLAGEPPARS-RAALEPALLATIDGVVDGEVGALAQPTRIRDARSGQ 183 Query: 188 KVRI 191 +R Sbjct: 184 ILRD 187 >gi|183219444|ref|YP_001837440.1| hypothetical protein LEPBI_I0017 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189909589|ref|YP_001961144.1| SUA5 family translation factor [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167774265|gb|ABZ92566.1| Translation factor, SUA5 family [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167777866|gb|ABZ96164.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 210 Score = 145 bits (368), Expect = 6e-33, Method: Composition-based stats. Identities = 53/188 (28%), Positives = 82/188 (43%), Gaps = 6/188 (3%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 L++ + L G PT+TVY + D+ + TA+ ++Y IKK P PL DISM Sbjct: 13 RKLKQISDRLKDGAIYIFPTDTVYAIIADANSKTAVEKIYSIKKLPKDKPLSLLCRDISM 72 Query: 70 VKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127 + + K PGP T VL ++ K R+P ++L Sbjct: 73 ASHFIEYLPNSAYRFMKRMTPGPFTFVLKANKNLPKPSIAHHKDKQIGIRIPDHIYLQEL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ + PL SA + I L S + IIDGGI KI L ST++ + + Sbjct: 133 LKIHDSPLTSTSAFSDDEFIIDIDD--LESIYGNLVDGIIDGGIVKIEL-STMIQIH-DD 188 Query: 188 KVRILRPG 195 + ++R G Sbjct: 189 SLELIRAG 196 >gi|66043293|ref|YP_233134.1| SUA5/yciO/yrdC, N-terminal [Pseudomonas syringae pv. syringae B728a] gi|302186431|ref|ZP_07263104.1| SUA5/yciO/yrdC, N-terminal [Pseudomonas syringae pv. syringae 642] gi|75504059|sp|Q500S6|RIMN_PSEU2 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|63254000|gb|AAY35096.1| SUA5/yciO/yrdC, N-terminal [Pseudomonas syringae pv. syringae B728a] gi|330937247|gb|EGH41263.1| SUA5/yciO/yrdC [Pseudomonas syringae pv. pisi str. 1704B] gi|330970346|gb|EGH70412.1| SUA5/yciO/yrdC [Pseudomonas syringae pv. aceris str. M302273PT] gi|330976425|gb|EGH76481.1| SUA5/yciO/yrdC [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 185 Score = 145 bits (368), Expect = 6e-33, Method: Composition-based stats. Identities = 47/187 (25%), Positives = 75/187 (40%), Gaps = 4/187 (2%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + S +++A + + AG IA PTE V+GL D + A+ RL IK RP LI Sbjct: 1 MVSSWRVQQAAQDIRAGAVIAYPTEAVWGLGCDPWDEEAVYRLLAIKSRPVEKGLILIAD 60 Query: 66 DISMVK-KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 +I L L WPGP T ++ + T +T RV T Sbjct: 61 NIRQFDFLFEDFPELWLDRMASTWPGPNTWLVPHQ--NLLPEWITGIHETVALRVTDHPT 118 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + + PL SAN +G+ + + + +I ++ G + S I ++ Sbjct: 119 VRELCALVGPLISTSANPAGRPAARSRLRV-EQYFRGQIDGVLGGSLGGRRNPSVIRDIA 177 Query: 185 CEKKVRI 191 + VR Sbjct: 178 TAQIVRA 184 >gi|317153990|ref|YP_004122038.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio aespoeensis Aspo-2] gi|316944241|gb|ADU63292.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio aespoeensis Aspo-2] Length = 204 Score = 145 bits (368), Expect = 6e-33, Method: Composition-based stats. Identities = 49/187 (26%), Positives = 87/187 (46%), Gaps = 2/187 (1%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 + + AG + PTET+Y L D+ + A ++ +IK R A+ PL + + M+ Sbjct: 6 KAMTAGDVVVYPTETLYALGCDATSEAACEKVMDIKGRSAVKPLPLIIGGVDMLGLVTDD 65 Query: 77 DPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPL 135 P + L LA FWPGPL++++ L LS + T+ F +L P+ Sbjct: 66 RPAALLELASSFWPGPLSILVKALPELPSC-LSDEDGYTSVRWSGHPFASELSRRLRKPI 124 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 SAN SG++ + + + + + +D K G ST++ V ++ +LR G Sbjct: 125 VATSANLSGEVPVALPEDLSPRLVELAGAVYVDPPWPKGGKPSTVIRVLGATRLEVLREG 184 Query: 196 GLEIETL 202 + ++ L Sbjct: 185 AVSVKKL 191 >gi|302334926|ref|YP_003800133.1| protein-(glutamine-N5) methyltransferase, release factor-specific [Olsenella uli DSM 7084] gi|301318766|gb|ADK67253.1| protein-(glutamine-N5) methyltransferase, release factor-specific [Olsenella uli DSM 7084] Length = 524 Score = 145 bits (368), Expect = 6e-33, Method: Composition-based stats. Identities = 58/203 (28%), Positives = 94/203 (46%), Gaps = 8/203 (3%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSR--NPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +R L G I +PT++VYG+ + NP R ++IK+R L ++D+ Sbjct: 323 VVRDVARVLLDGGVIVVPTDSVYGIGCAATPGNP-GHARTFQIKRRALSQTLPWLIADVQ 381 Query: 69 MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKK 126 +++ V + LA+ FWPG LTLV+ ++ T R+P ++ Sbjct: 382 DLERFGHRVPKWAYALAREFWPGALTLVVRASPLVP-AEYRRSDDGTIALRLPDSNLVRE 440 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 + G PLAI SAN G S T+ + + I E+ L++DGG S + STIV+ Sbjct: 441 IAREVGAPLAITSANTHGASSATSGEG-IEGRIAGEVDLVLDGGPSPLAAASTIVDCTGA 499 Query: 187 KKVRILRPGGLEIETLKRAISVE 209 R+LR G + + R + Sbjct: 500 DP-RVLREGAIPSVGIMRVADPD 521 >gi|71735048|ref|YP_272338.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|257485581|ref|ZP_05639622.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289647923|ref|ZP_06479266.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv. aesculi str. 2250] gi|123638999|sp|Q48QH8|RIMN_PSE14 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|71555601|gb|AAZ34812.1| SUA5/yciO/yrdC family domain protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|320326685|gb|EFW82730.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv. glycinea str. B076] gi|320331341|gb|EFW87284.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330867904|gb|EGH02613.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330890229|gb|EGH22890.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv. mori str. 301020] gi|330985720|gb|EGH83823.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011869|gb|EGH91925.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 185 Score = 145 bits (368), Expect = 6e-33, Method: Composition-based stats. Identities = 46/187 (24%), Positives = 75/187 (40%), Gaps = 4/187 (2%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + S +++A + + AG IA PTE V+GL D + A+ RL IK RP LI Sbjct: 1 MVSSWRVQQAAQDIRAGAVIAYPTEAVWGLGCDPWDEEAVYRLLAIKSRPVEKGLILIAD 60 Query: 66 DISMVK-KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 +I L L WPGP T ++ + T +T RV T Sbjct: 61 NIRQFDFLFEDFPQLWLDRMASTWPGPNTWLVPHQ--NLLPEWITGIHETVALRVTDHPT 118 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + + PL SAN +G+ + + + +I ++ G + S I ++ Sbjct: 119 VRELCALVGPLISTSANPAGRPAARSRLRV-EQYFRGQIDGVLGGSLGGRRNPSVIRDIA 177 Query: 185 CEKKVRI 191 + +R Sbjct: 178 TGQVMRA 184 >gi|271965090|ref|YP_003339286.1| hypothetical protein Sros_3610 [Streptosporangium roseum DSM 43021] gi|270508265|gb|ACZ86543.1| conserved hypothetical protein [Streptosporangium roseum DSM 43021] Length = 206 Score = 145 bits (368), Expect = 6e-33, Method: Composition-based stats. Identities = 41/188 (21%), Positives = 65/188 (34%), Gaps = 4/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + E L A IA PT++ Y L N I R+ EI+K + + D + Sbjct: 14 PRLISQIVELLHADGLIAYPTDSCYALGCRLGNKEGIDRIREIRKLGSDHHFTLICRDFA 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + V K PG T +L L KT R+P T+ L Sbjct: 74 QFGQFVHVSNALFRSVKAATPGGYTFILPATKEVP-RRLLHPRKKTVGVRIPDHVVTQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + + + + + +ID G +T+V+ + Sbjct: 133 LAELGEPLLSSTLLLPDETEPLTQGWEIKERLDHVVDAVIDSGECGA-TPTTVVDFSQGE 191 Query: 188 KVRILRPG 195 ILR G Sbjct: 192 P-EILRRG 198 >gi|220912546|ref|YP_002487855.1| Sua5/YciO/YrdC/YwlC family protein [Arthrobacter chlorophenolicus A6] gi|219859424|gb|ACL39766.1| Sua5/YciO/YrdC/YwlC family protein [Arthrobacter chlorophenolicus A6] Length = 206 Score = 145 bits (368), Expect = 6e-33, Method: Composition-based stats. Identities = 36/188 (19%), Positives = 66/188 (35%), Gaps = 4/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 A+ +A + G IA PT++ Y L N A+ R+ I+ + D + Sbjct: 14 PRAIAQAVSIVRDGGLIAYPTDSCYALGAQMGNKEALDRIRTIRHLDDKHHFTLVCRDFA 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + ++ K PG T +L L KT R+P + L Sbjct: 74 QLGQFVNIGNDVFRSIKSVTPGSYTFILPATKEVP-KRLLHPKKKTVGVRIPDNRVVQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + + V + + ++ +ID G +T+V+ Sbjct: 133 LAELGEPLLSSTLLLPDEDEPLTVGWEIKERLDHQVDAVIDAGDCGA-EPTTVVDFSS-G 190 Query: 188 KVRILRPG 195 ++R G Sbjct: 191 VAEVVRHG 198 >gi|330998752|ref|ZP_08322480.1| Sua5/YciO/YrdC/YwlC family protein [Parasutterella excrementihominis YIT 11859] gi|329576249|gb|EGG57765.1| Sua5/YciO/YrdC/YwlC family protein [Parasutterella excrementihominis YIT 11859] Length = 207 Score = 145 bits (368), Expect = 7e-33, Method: Composition-based stats. Identities = 47/204 (23%), Positives = 88/204 (43%), Gaps = 5/204 (2%) Query: 1 MQIMSITD-SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 +Q+M + + + +A + L G A+ T+T + L + A+ ++ I++ Sbjct: 5 LQVMPESPQPHRIEQAAKLLTKGQLAAVSTDTGFSLVCRLDDKEALDKIRLIRQLSEKKH 64 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 +S + K A V+ +AK PGP T +L+ LS + KT RV Sbjct: 65 FTLFCDSLSQMSKLARVNNTGYRMAKSVTPGPYTFILEATKEVP-RRLSHPSKKTIGLRV 123 Query: 120 PCGFTK-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P L+E G PL + G+ + + I ++ I+D G S IG ++ Sbjct: 124 PSNKALHALLEKIGEPLVGTTVIMPGEEEPLSSAWEIQDRIGDQLAFILDDGTSVIG-DT 182 Query: 179 TIVNVQCEKKVRILRPGGLEIETL 202 T+V++ ++ ++R G + L Sbjct: 183 TVVDLSGDEP-EVIREGLGSVSAL 205 >gi|325963157|ref|YP_004241063.1| translation factor SUA5 [Arthrobacter phenanthrenivorans Sphe3] gi|323469244|gb|ADX72929.1| translation factor SUA5 [Arthrobacter phenanthrenivorans Sphe3] Length = 206 Score = 145 bits (368), Expect = 7e-33, Method: Composition-based stats. Identities = 35/196 (17%), Positives = 68/196 (34%), Gaps = 4/196 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 A+ +A + L G +A PT++ Y L N A+ R+ I++ + D + Sbjct: 14 PRAISQAVKILLDGGLVAYPTDSCYALGAQVGNREALDRIRSIRRLDDKHHFTLVCRDFA 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + + K PG T +L L KT R+P + L Sbjct: 74 QLGQFVHIGNDVFRSIKAVTPGGYTFILPATKEVP-KRLLHPKKKTVGVRIPDNRVVQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + + + + E+ +ID G +T+++ Sbjct: 133 LAELGEPLLSSTLLLPDEEDPLTQGWEIKERLDHEVDAVIDAGDCGS-EPTTVIDFSS-G 190 Query: 188 KVRILRPGGLEIETLK 203 ++R G + + Sbjct: 191 TAEVVRRGTGDPSRFE 206 >gi|302780313|ref|XP_002971931.1| hypothetical protein SELMODRAFT_441705 [Selaginella moellendorffii] gi|300160230|gb|EFJ26848.1| hypothetical protein SELMODRAFT_441705 [Selaginella moellendorffii] Length = 303 Score = 145 bits (368), Expect = 7e-33, Method: Composition-based stats. Identities = 50/203 (24%), Positives = 83/203 (40%), Gaps = 20/203 (9%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L + L G +PT+T+Y + D N AI RLY IK A PL + Sbjct: 86 LDQVVSLLQDGGVGVVPTDTIYAIVCDLHNRAAIERLYRIKDMDAKKPLSILCRSFQDID 145 Query: 72 KHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLST----------ANLKTACFRVP 120 K+ + P S +A+ PGP T +L ++ D+ T A K+ R+P Sbjct: 146 KYTTGFPTSFFRVARQCLPGPYTFILP--ASKDMPKQCTRFGGSVAASYAPRKSVGVRIP 203 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSIC-----KEIPLIIDGGISKI 174 +++ HPL S R I++ + + + I+DGG +++ Sbjct: 204 DDSVWREMAGQLEHPLLCTSVRRPADDEWMLDPAIIADTYGVSSGRESVDFIVDGG-TRV 262 Query: 175 GLESTIVNVQCEKKVRILRPGGL 197 ST+V++ V + R G+ Sbjct: 263 ANPSTVVDMTGTMPVVLRRGKGV 285 >gi|74318478|ref|YP_316218.1| translation factor SUA5 [Thiobacillus denitrificans ATCC 25259] gi|123611282|sp|Q3SG43|RIMN_THIDA RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|74057973|gb|AAZ98413.1| probable Sua5/YciO/YrdC family protein [Thiobacillus denitrificans ATCC 25259] Length = 188 Score = 145 bits (367), Expect = 7e-33, Method: Composition-based stats. Identities = 47/177 (26%), Positives = 72/177 (40%), Gaps = 6/177 (3%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-S 75 +L G IA PTE+ YGL D RN A+RRL +K R A ++ ++ + Sbjct: 16 AYLRRGGVIAYPTESCYGLGCDPRNAAALRRLIRLKGRDAGKGMLLIADRYRRLQPFVGA 75 Query: 76 VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134 + P + WPGP+T V+ ++ P T T RV L + G Sbjct: 76 LSPTGRARMRRSWPGPVTWVVP--ASRRCPPELTGGRTTVAVRVTAHRPAAALCRSLGTA 133 Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 L SAN+SG + ++DG I ST++++ K +R Sbjct: 134 LVSTSANKSGHTPAKTAAQC-RRMFGARV-RVVDGRIGTRRRPSTLIDLATGKILRA 188 >gi|159038218|ref|YP_001537471.1| Sua5/YciO/YrdC/YwlC family protein [Salinispora arenicola CNS-205] gi|157917053|gb|ABV98480.1| Sua5/YciO/YrdC/YwlC family protein [Salinispora arenicola CNS-205] Length = 206 Score = 145 bits (367), Expect = 8e-33, Method: Composition-based stats. Identities = 36/196 (18%), Positives = 71/196 (36%), Gaps = 4/196 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 LR+ + AG IA PT++ + L + + R+ +I++ + D + Sbjct: 14 PRILRQVVGLVQAGGLIAYPTDSCFALGCQLGDRHGLDRIRDIRRLNERHHFTLVCRDFA 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + V L K PG T VL + +T RVP T+ L Sbjct: 74 QLGQFVQVSNAMFRLVKSCIPGSYTFVLPATREVP-RRMLHPRKRTVGVRVPDHAVTQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + + + + + ++D G +T+V++ ++ Sbjct: 133 LAELGEPLVSSTLVLPDEDEPLTQGWEIKERLDHVLDGVVDAGDCG-KDPTTVVDLSGDE 191 Query: 188 KVRILRPGGLEIETLK 203 +LR G + + Sbjct: 192 P-EVLRRGAGDTSRFE 206 >gi|298484630|ref|ZP_07002734.1| tRNA (ANN) t(6)A37 threonylcarbamoyladenosine biosynthesis protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160854|gb|EFI01871.1| tRNA (ANN) t(6)A37 threonylcarbamoyladenosine biosynthesis protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 185 Score = 145 bits (367), Expect = 8e-33, Method: Composition-based stats. Identities = 46/187 (24%), Positives = 75/187 (40%), Gaps = 4/187 (2%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + S +++A + + AG IA PTE V+GL D + A+ RL IK RP LI Sbjct: 1 MASSWRVQQAAQDIRAGAVIAYPTEAVWGLGCDPWDEEAVYRLLAIKSRPVEKGLILIAD 60 Query: 66 DISMVK-KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 +I L L WPGP T ++ + T +T RV T Sbjct: 61 NIRQFDFLFEDFPQLWLDRMASTWPGPNTWLVPHQ--NLLPEWITGIHETVALRVTDHPT 118 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + + PL SAN +G+ + + + +I ++ G + S I ++ Sbjct: 119 VRELCALVGPLISTSANPAGRPAARSRLRV-EQYFRGQIDGVLGGSLGGRRNPSVIRDIA 177 Query: 185 CEKKVRI 191 + +R Sbjct: 178 TGQVMRA 184 >gi|228471330|ref|ZP_04056131.1| Sua5/YciO/YrdC/YwlC family protein [Porphyromonas uenonis 60-3] gi|228306831|gb|EEK15944.1| Sua5/YciO/YrdC/YwlC family protein [Porphyromonas uenonis 60-3] Length = 230 Score = 145 bits (367), Expect = 8e-33, Method: Composition-based stats. Identities = 43/187 (22%), Positives = 79/187 (42%), Gaps = 6/187 (3%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +A R+A + L G I PT+T++GL D+ N A+ RL +K RP P++ V Sbjct: 47 SAAREAVDVLQRGGIILYPTDTIWGLGCDATNEEAVDRLSALKGRPTGKPMLMLVDSDMR 106 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + + P + PLT++ ++ P A + R+ +++ Sbjct: 107 IPSYVRTVPSMAYQLIDVAVRPLTIIYP--GGRNVAPQLLAEDGSIGIRIASDTLCQEIC 164 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--GLESTIVNVQCE 186 PL SAN +G S N + + K + ++ + G+ S I+ + Sbjct: 165 RLLRRPLVSTSANLAGTTSPHNYSE-IDHELIKLVDYVVPLRQEEHIDGMPSDIIKLGLN 223 Query: 187 KKVRILR 193 +VR++R Sbjct: 224 NEVRVIR 230 >gi|332289472|ref|YP_004420324.1| putative ribosome maturation factor [Gallibacterium anatis UMN179] gi|330432368|gb|AEC17427.1| putative ribosome maturation factor [Gallibacterium anatis UMN179] Length = 187 Score = 145 bits (367), Expect = 9e-33, Method: Composition-based stats. Identities = 43/189 (22%), Positives = 72/189 (38%), Gaps = 8/189 (4%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + + N L L G IA PTE V+GL D N AI +L ++K+RP LI Sbjct: 1 MKEMNNLDFIISQLKQGEVIAYPTEAVFGLGCDPFNDQAIEKLLKLKQRPQEKGLILIAP 60 Query: 66 DIS---MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPC 121 + + + L + + P T ++ + + PL T T R Sbjct: 61 HLDFFKQIIDFNKLSAQDLQRLQQTYSRPTTWIVPVQK--QVSPLLTGRFDTIAVRLCRH 118 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 + L + P+ SAN SGQ + + + + P ++ + S I Sbjct: 119 PAVEMLCQLAKMPITSTSANFSGQEPCRTYQQV-QAQFGESFP-VLQAEVGDAKNPSEIR 176 Query: 182 NVQCEKKVR 190 ++ + VR Sbjct: 177 DLFTNQIVR 185 >gi|253996063|ref|YP_003048127.1| Sua5/YciO/YrdC/YwlC family protein [Methylotenera mobilis JLW8] gi|253982742|gb|ACT47600.1| Sua5/YciO/YrdC/YwlC family protein [Methylotenera mobilis JLW8] Length = 208 Score = 145 bits (367), Expect = 9e-33, Method: Composition-based stats. Identities = 36/194 (18%), Positives = 75/194 (38%), Gaps = 5/194 (2%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 +S + + + L G I PT++ Y L + A R+ +I+ + Sbjct: 9 LSNPQPRLIVQTADILRKGGVIVYPTDSGYALGCMLGHADAQARIRQIRGVDDKHLFSLM 68 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 ++S + +A V L K PG T +L+ L T RVP Sbjct: 69 CRNLSELGNYAVVSNSQFRLLKANTPGAYTFILNATREVP-RKLQHPKRSTIGIRVPQHS 127 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNV-KHILSSSICKEIPLIIDGGISKIGLESTIV 181 + L+E P+ + + ++ + + + + + L+I+ + G +T++ Sbjct: 128 VVQALLEAIDTPMLSMTFSLPDDEDVSLMEPWAMRERLERVVDLVIEVEHCEAG-ATTVI 186 Query: 182 NVQCEKKVRILRPG 195 ++ E V ++R G Sbjct: 187 DLTDETPV-LVREG 199 >gi|330470259|ref|YP_004408002.1| sua5/ycio/yrdc/ywlc family protein [Verrucosispora maris AB-18-032] gi|328813230|gb|AEB47402.1| sua5/ycio/yrdc/ywlc family protein [Verrucosispora maris AB-18-032] Length = 194 Score = 145 bits (367), Expect = 9e-33, Method: Composition-based stats. Identities = 59/196 (30%), Positives = 88/196 (44%), Gaps = 6/196 (3%) Query: 16 CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75 E + A +PT+TVYGLAV +PTAI RL+ +K RP L V + + Sbjct: 2 AEIILAEGVALLPTDTVYGLAVRPDSPTAIDRLFAMKGRPREKNLPVMVGSGEQLSELGV 61 Query: 76 VDPLS--LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGH 133 + LA + PGPLTL + + A R+P I Sbjct: 62 DINEACSRCLASPYMPGPLTLAVGFVEDGRRPAWL-AGRDEVAVRIPAHPAMLAILAQTG 120 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 PL + SAN SG + NV ILSS + + + G +SK + ST+VN + + V + R Sbjct: 121 PLLVTSANISGGPTHENVPSILSSLLFEPDVTVDRGPLSK--VPSTLVNCRKDPPV-VER 177 Query: 194 PGGLEIETLKRAISVE 209 G + + R ++V+ Sbjct: 178 VGVVSETEILRMLNVD 193 >gi|298346859|ref|YP_003719546.1| RNA binding protein [Mobiluncus curtisii ATCC 43063] gi|315655404|ref|ZP_07908304.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus curtisii ATCC 51333] gi|298236920|gb|ADI68052.1| RNA binding protein [Mobiluncus curtisii ATCC 43063] gi|315490344|gb|EFU79969.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus curtisii ATCC 51333] Length = 207 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 40/207 (19%), Positives = 80/207 (38%), Gaps = 8/207 (3%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 +I + N +LR+ E + G +A PT++ Y L N + R+ +I++ Sbjct: 4 KIFELHPENPQARSLRQIVEIIQDGGIMAYPTDSGYALGCALANGAGLERIRKIRQLDDK 63 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 + D S + + V L K PGP T +L L+ T Sbjct: 64 HHFTLVCHDFSQLGQLVMVSNSQYRLIKSLTPGPYTFILKGTKEVPRATLNKKKH-TVGV 122 Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P L+E G + + G + + + + + +I+D I Sbjct: 123 RIPAHKVALSLVEALGEAILSCTLLLPGDTEPLSDPVEVIAKLGHLLDVIVDSPIGSD-Q 181 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLK 203 +T++N++ + + + R G ++ L+ Sbjct: 182 ATTVINMEDDVPI-VTREGAGPVDFLE 207 >gi|323142784|ref|ZP_08077497.1| Sua5/YciO/YrdC/YwlC family protein [Succinatimonas hippei YIT 12066] gi|322417429|gb|EFY08050.1| Sua5/YciO/YrdC/YwlC family protein [Succinatimonas hippei YIT 12066] Length = 189 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 51/194 (26%), Positives = 84/194 (43%), Gaps = 10/194 (5%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + KA E L G + PTE +YG++ + N A+ R+ ++K+R + LI VS Sbjct: 2 DDPKIVKAAEILKQGGVVIAPTEGLYGVSCLASNDRAVERVIKVKERSSAKGLIVAVSSF 61 Query: 68 SMVKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GF 123 M + LS + WPGP T ++ + + L T R Sbjct: 62 EMAQSLIDFSKLSSGNIDFMLSMWPGPHTFIVPAAKS--VSSLVTGGRDNIALRFTAFST 119 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 ++L E G PL SAN SGQ + + L++ ++ I+D + S+I + Sbjct: 120 LQRLCELSGGPLISSSANISGQPPLMTLSD-LNAVFGGKVDYILDLPCQGLKGPSSIHDA 178 Query: 184 QCEKKVRILRPGGL 197 ++LR GG+ Sbjct: 179 ITG---KLLRKGGV 189 >gi|28493400|ref|NP_787561.1| hypothetical protein TWT433 [Tropheryma whipplei str. Twist] gi|28572489|ref|NP_789269.1| hypothetical protein TW335 [Tropheryma whipplei TW08/27] gi|28410621|emb|CAD67007.1| conserved hypothetical protein [Tropheryma whipplei TW08/27] gi|28476441|gb|AAO44530.1| unknown [Tropheryma whipplei str. Twist] Length = 225 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 68/220 (30%), Positives = 101/220 (45%), Gaps = 29/220 (13%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +A R A + +G I +PT+TVYGLA D+ P A+ RL EIK R A P V I Sbjct: 13 SAFRAAKRSISSGGVIVVPTDTVYGLAADAFQPEAVGRLLEIKGRTAAPP--VLVGSIET 70 Query: 70 VKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128 + V P +L LAK FWPGPLTLVL T R+P + Sbjct: 71 FQAIVDVLPEPALALAKRFWPGPLTLVLRTRPGLLW-------GDTVAVRIPRHSFLLQL 123 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG--ISKIGLESTIVNVQC- 185 PLA+ SAN SG+ +V+ S+ + + IDG + + S+IV++ Sbjct: 124 LDEIGPLAVSSANISGRRPALSVRSA-RGSLRDKPAMYIDGDRIDNPDRVPSSIVDLTDF 182 Query: 186 ---------------EKKVRILRPGGLEIETLKRAISVEL 210 + R+LR G + ++L++A+ ++L Sbjct: 183 CEDSAGRIFEGVSPKTAQPRLLRDGAIPWKSLEKAMQMKL 222 >gi|257790786|ref|YP_003181392.1| Sua5/YciO/YrdC/YwlC family protein [Eggerthella lenta DSM 2243] gi|257474683|gb|ACV55003.1| Sua5/YciO/YrdC/YwlC family protein [Eggerthella lenta DSM 2243] Length = 202 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 61/201 (30%), Positives = 94/201 (46%), Gaps = 8/201 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S++ R+A L G + PTETVYGL V + LY++K+R P+ V + Sbjct: 5 SSSKREAVAALKRGEAVIFPTETVYGLGVSVEAAASPEALYDLKERDRGKPVSWLVGGVD 64 Query: 69 MVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKK 126 + ++ A V L+ LA+ +WPGPLTL+++ S A + R+P + Sbjct: 65 DLDRYGAHVPDLARRLARAYWPGPLTLIVEASDAVPAAFRSAAG--SIGLRMPDNDTALE 122 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSI--CKEIPLIIDGGISKIGLESTIVNVQ 184 LIE G PLA SAN SG + L + C + + D K G+ ST+++ Sbjct: 123 LIEAVGCPLATTSANISGLQAPGAF-DALDPVLAACVGVVVPDDTDDDKSGVASTVLDCT 181 Query: 185 CEKKVRILRPGGLEIETLKRA 205 RILR G + ++ A Sbjct: 182 VN-PPRILREGAVTEADIRAA 201 >gi|90408507|ref|ZP_01216665.1| hypothetical protein PCNPT3_05174 [Psychromonas sp. CNPT3] gi|90310386|gb|EAS38513.1| hypothetical protein PCNPT3_05174 [Psychromonas sp. CNPT3] Length = 206 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 42/193 (21%), Positives = 74/193 (38%), Gaps = 4/193 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L+KA E L I PT++ Y L N + R+ ++ + D+S + Sbjct: 17 LKKAVETLKNNGVIIYPTDSGYALGCLMDNKQGLERIRHLRDLDKKHNFTLLCRDLSEIS 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIET 130 A +D + + K PG T + L + +T R+P L+E Sbjct: 77 TFARIDNQAYRMLKKNTPGAYTFIFKSTKELP-KRLMNPSKRTIGIRIPDNIIALALLEL 135 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G PL S G S + + ++ LI++GG +T+++ E + Sbjct: 136 LGEPLMTTSLILPGNDSTEYDPEEIRDQLENQVDLILNGGYLGES-PTTVIDF-SEDSIA 193 Query: 191 ILRPGGLEIETLK 203 I+R G +I + Sbjct: 194 IMREGAGDISPFQ 206 >gi|262384492|ref|ZP_06077626.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 2_1_33B] gi|301309113|ref|ZP_07215057.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 20_3] gi|262293785|gb|EEY81719.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 2_1_33B] gi|300832795|gb|EFK63421.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 20_3] Length = 186 Score = 144 bits (365), Expect = 1e-32, Method: Composition-based stats. Identities = 47/189 (24%), Positives = 89/189 (47%), Gaps = 8/189 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++KACE + AG I PT+T++G+ D+ N A++R+YE+K+R ++ + + Sbjct: 2 TEDIKKACEVMAAGGIILYPTDTIWGIGCDATNEKAVQRVYELKRRADNKAMLVLMDSEA 61 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKK 126 + ++ V ++ L PLT++ S ++ + R+ F+KK Sbjct: 62 KLDRYVSDVPDIAWDLI-SVSDKPLTIIYS--SAKNLATNLLGADGSVGIRITNEEFSKK 118 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL--ESTIVNVQ 184 L E + PL SAN SG+ S N + S I + + I+ + S I+ + Sbjct: 119 LCERFRKPLVSTSANVSGEPSPANFSEV-SEVIKEGVDYIVSYRQDDMSKAAPSGIIKLG 177 Query: 185 CEKKVRILR 193 V+++R Sbjct: 178 AGGLVQVIR 186 >gi|76788852|ref|YP_327938.1| sua5/YciO/YrdC/YwlC family protein [Chlamydia trachomatis A/HAR-13] gi|76167382|gb|AAX50390.1| sua5/YciO/YrdC/YwlC family protein [Chlamydia trachomatis A/HAR-13] Length = 281 Score = 144 bits (365), Expect = 1e-32, Method: Composition-based stats. Identities = 55/200 (27%), Positives = 91/200 (45%), Gaps = 16/200 (8%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 ++ E + AG A PT+TVYGL V A +RL+ +K R + L +VS + ++ Sbjct: 4 QQIEESIKAGQVFAFPTDTVYGLGVSFHILDADQRLFALKHRSSQKALSVYVSSLEELEA 63 Query: 73 HASVD--PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 A S + + F PGPLTL+ H KT FR+ +++I+ Sbjct: 64 VAQQSLGASSRKIIQKFLPGPLTLITK-------HNNPRFPQKTLGFRIVNHPIVQQIIQ 116 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G P SAN SG S + + ++I +I G IGLEST+++ E+++ Sbjct: 117 KVG-PFLATSANLSGFPSAVSADEVKQDFPEEDIVMI--SGECSIGLESTVID--PEERI 171 Query: 190 RILRPGGLEIETLKRAISVE 209 + R + I ++ + Sbjct: 172 -VYRESAISIAEIETVLGAP 190 >gi|15604856|ref|NP_219640.1| SuA5 superfamily-related protein [Chlamydia trachomatis D/UW-3/CX] gi|237802566|ref|YP_002887760.1| hypothetical protein JALI_1361 [Chlamydia trachomatis B/Jali20/OT] gi|237804484|ref|YP_002888638.1| hypothetical protein CTB_1361 [Chlamydia trachomatis B/TZ1A828/OT] gi|255310937|ref|ZP_05353507.1| hypothetical protein Ctra62_00710 [Chlamydia trachomatis 6276] gi|255317238|ref|ZP_05358484.1| hypothetical protein Ctra6_00705 [Chlamydia trachomatis 6276s] gi|255348499|ref|ZP_05380506.1| hypothetical protein Ctra70_00720 [Chlamydia trachomatis 70] gi|255503040|ref|ZP_05381430.1| hypothetical protein Ctra7_00735 [Chlamydia trachomatis 70s] gi|255506712|ref|ZP_05382351.1| hypothetical protein CtraD_00725 [Chlamydia trachomatis D(s)2923] gi|3328537|gb|AAC67728.1| SuA5 Superfamily-related Protein [Chlamydia trachomatis D/UW-3/CX] gi|231272784|emb|CAX09690.1| conserved hypothetical protein [Chlamydia trachomatis B/TZ1A828/OT] gi|231273800|emb|CAX10584.1| conserved hypothetical protein [Chlamydia trachomatis B/Jali20/OT] gi|289525178|emb|CBJ14653.1| conserved hypothetical protein [Chlamydia trachomatis Sweden2] gi|296434726|gb|ADH16904.1| hypothetical protein E150_00725 [Chlamydia trachomatis E/150] gi|296435653|gb|ADH17827.1| hypothetical protein G9768_00705 [Chlamydia trachomatis G/9768] gi|296436576|gb|ADH18746.1| hypothetical protein G11222_00710 [Chlamydia trachomatis G/11222] gi|296437513|gb|ADH19674.1| hypothetical protein G11074_00705 [Chlamydia trachomatis G/11074] gi|296438444|gb|ADH20597.1| hypothetical protein E11023_00715 [Chlamydia trachomatis E/11023] gi|297140012|gb|ADH96770.1| hypothetical protein CTG9301_00705 [Chlamydia trachomatis G/9301] gi|297748267|gb|ADI50813.1| Sua5/YciO/YrdC/YwlC family protein [Chlamydia trachomatis D-EC] gi|297749147|gb|ADI51825.1| Sua5/YciO/YrdC/YwlC family protein [Chlamydia trachomatis D-LC] Length = 281 Score = 144 bits (365), Expect = 1e-32, Method: Composition-based stats. Identities = 55/200 (27%), Positives = 91/200 (45%), Gaps = 16/200 (8%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 ++ E + AG A PT+TVYGL V A +RL+ +K R + L +VS + ++ Sbjct: 4 QQIEESIKAGQVFAFPTDTVYGLGVSFHILDADQRLFALKHRSSQKALSVYVSSLEELEA 63 Query: 73 HASVD--PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 A S + + F PGPLTL+ H KT FR+ +++I+ Sbjct: 64 VAQQSLGASSRKIIQKFLPGPLTLITK-------HNNPRFPQKTLGFRIVNHPIVQQIIQ 116 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G P SAN SG S + + ++I +I G IGLEST+++ E+++ Sbjct: 117 KVG-PFLATSANLSGFPSAVSADEVKQDFPEEDIVMI--SGECSIGLESTVID--PEERI 171 Query: 190 RILRPGGLEIETLKRAISVE 209 + R + I ++ + Sbjct: 172 -VYRESAISIAEIETVLGAP 190 >gi|71279925|ref|YP_266809.1| putative RNA-binding protein [Colwellia psychrerythraea 34H] gi|123634304|sp|Q48AU1|RIMN_COLP3 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|71145665|gb|AAZ26138.1| putative RNA-binding protein [Colwellia psychrerythraea 34H] Length = 183 Score = 144 bits (365), Expect = 1e-32, Method: Composition-based stats. Identities = 43/182 (23%), Positives = 70/182 (38%), Gaps = 7/182 (3%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 + E G IA PTE V+GL D N A++RL ++K+R LI S + Sbjct: 4 KNVVEAFKNGGIIAYPTEAVFGLGCDPDNKEALKRLLKLKQRSPEKGLILLAGSYSQLLP 63 Query: 73 HASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLI 128 + + WP +T ++ +I L + + T R+ L Sbjct: 64 YIDDSKIPQDKRLTLLSRWPDGITQLVP--KNNNISSLLSGSFDTIAVRITSQPDVVALC 121 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 + P+ SAN SGQ + L + K++ I+ G S I++ K Sbjct: 122 QQTNKPIVSTSANLSGQEPAKTWQS-LDLVLSKQVDFILKGVTLGRTSPSKIIDALTGKI 180 Query: 189 VR 190 +R Sbjct: 181 IR 182 >gi|325924326|ref|ZP_08185870.1| translation factor SUA5 [Xanthomonas gardneri ATCC 19865] gi|325545191|gb|EGD16501.1| translation factor SUA5 [Xanthomonas gardneri ATCC 19865] Length = 191 Score = 144 bits (365), Expect = 1e-32, Method: Composition-based stats. Identities = 45/185 (24%), Positives = 75/185 (40%), Gaps = 7/185 (3%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 ++ A L G IA PTE V+GL D R A+ RL IK+RP +I + + ++ Sbjct: 10 SVDNAVAALTRGGVIAYPTEAVWGLGCDPRQEAAVLRLLAIKRRPVDKGVIVVAASVDIL 69 Query: 71 KKHASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 D P + WPGP T +L + T R+ Sbjct: 70 HDWVDFDALEPARKQEVLVSWPGPHTWILPV--TAQAPRWVAGAHDGLAVRISAHPVVAA 127 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L +G PL SAN +G+ + + L ++ I ++DG + + + I + + Sbjct: 128 LCAAWGAPLVSTSANLAGEPPARS-RQSLDPALLVSIDGVVDGEVGALAQPTQIRDARSG 186 Query: 187 KKVRI 191 + +R Sbjct: 187 QILRD 191 >gi|56751762|ref|YP_172463.1| hypothetical protein syc1753_d [Synechococcus elongatus PCC 6301] gi|81301159|ref|YP_401367.1| translation factor SUA5 [Synechococcus elongatus PCC 7942] gi|56686721|dbj|BAD79943.1| hypothetical protein [Synechococcus elongatus PCC 6301] gi|81170040|gb|ABB58380.1| translation factor SUA5 [Synechococcus elongatus PCC 7942] Length = 233 Score = 144 bits (365), Expect = 1e-32, Method: Composition-based stats. Identities = 41/213 (19%), Positives = 82/213 (38%), Gaps = 21/213 (9%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + E L G I PT++VY + D ++ A++R+ IK+ PL +S Sbjct: 14 PQQIAAIAEALRQGAVILYPTDSVYAIGCDVKDRAAVQRVRRIKEIDNDKPLTFICPSLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + ++ + + L + PGP T +L + +TA R+P + L Sbjct: 74 VAAQYGCISDRAFRLMRELVPGPYTFLLPATPEVPRV-VMNPKRRTAGIRIPNNPICQAL 132 Query: 128 IETYGHPLAIPSAN--RSGQISITNVKH-----ILSSSICKEIPLIIDGGISKIGLE--- 177 ++ P+ SA+ S + + + I + + E+ ++D I E Sbjct: 133 LQALEGPIISTSAHLQPSDRKAPLAYEQGPHCPIAPAELFGEVDRLVDITIEVERQEMRI 192 Query: 178 ---------STIVNVQCEKKVRILRPGGLEIET 201 ST++++ + + + R G E Sbjct: 193 LGADPDYQVSTVLDLTDDWPLVLRRGLGWEALE 225 >gi|317488503|ref|ZP_07947054.1| Sua5/YciO/YrdC/YwlC family protein [Eggerthella sp. 1_3_56FAA] gi|316912435|gb|EFV33993.1| Sua5/YciO/YrdC/YwlC family protein [Eggerthella sp. 1_3_56FAA] Length = 202 Score = 144 bits (365), Expect = 1e-32, Method: Composition-based stats. Identities = 60/201 (29%), Positives = 93/201 (46%), Gaps = 8/201 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S++ R+A L G + PTETVYGL V + LY++K+R P+ V + Sbjct: 5 SSSKREAVAALKRGEAVIFPTETVYGLGVSVEAAASPEALYDLKERDRGKPVSWLVGGVD 64 Query: 69 MVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KK 126 + ++ A V L+ LA+ +WPGPLTL+++ S A + R+P T + Sbjct: 65 DLDRYGAHVPDLARRLARAYWPGPLTLIVEAGDAVPAAFRSAAG--SIGLRMPDNDTGLE 122 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKE--IPLIIDGGISKIGLESTIVNVQ 184 LIE G PLA SAN SG + L + + + D K G+ ST+++ Sbjct: 123 LIEAVGCPLATTSANISGLQAPGAF-DALDPRLAARVGVVVPDDTDDDKSGVASTVLDCT 181 Query: 185 CEKKVRILRPGGLEIETLKRA 205 RILR G + ++ Sbjct: 182 VN-PPRILREGAVAEADIRAV 201 >gi|150008371|ref|YP_001303114.1| putative translation factor [Parabacteroides distasonis ATCC 8503] gi|255015619|ref|ZP_05287745.1| putative translation factor [Bacteroides sp. 2_1_7] gi|256839339|ref|ZP_05544848.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|298375013|ref|ZP_06984970.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 3_1_19] gi|149936795|gb|ABR43492.1| conserved hypothetical protein, putative translation factor [Parabacteroides distasonis ATCC 8503] gi|256738269|gb|EEU51594.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|298267513|gb|EFI09169.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 3_1_19] Length = 186 Score = 144 bits (365), Expect = 2e-32, Method: Composition-based stats. Identities = 47/189 (24%), Positives = 89/189 (47%), Gaps = 8/189 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++KACE + AG I PT+T++G+ D+ N A++R+YE+K+R ++ + + Sbjct: 2 TEDIKKACEVMAAGGIILYPTDTIWGIGCDATNEKAVQRVYELKRRTDNKAMLVLMDSEA 61 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKK 126 + ++ V ++ L PLT++ S ++ + R+ F+KK Sbjct: 62 KLDRYVSDVPDIAWDLI-SVSDKPLTIIYS--SAKNLATNLLGADGSVGIRITNEEFSKK 118 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL--ESTIVNVQ 184 L E + PL SAN SG+ S N + S I + + I+ + S I+ + Sbjct: 119 LCERFRKPLVSTSANVSGEPSPANFSEV-SEVIKEGVDYIVSYRQDDMSKAAPSGIIKLG 177 Query: 185 CEKKVRILR 193 V+++R Sbjct: 178 AGGLVQVIR 186 >gi|302538419|ref|ZP_07290761.1| SUA5/YciO/YrdC/YwlC family protein [Streptomyces sp. C] gi|302447314|gb|EFL19130.1| SUA5/YciO/YrdC/YwlC family protein [Streptomyces sp. C] Length = 206 Score = 144 bits (365), Expect = 2e-32, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 62/183 (33%), Gaps = 4/183 (2%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 + L +G IA PT++ + L N + R+ I+ + + + + + Sbjct: 20 VVDSLRSGALIAYPTDSCFALGCQLGNRDGLARIRSIRNLDDKHHFTLVCQNFAQLGQFV 79 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133 VD K PG T +L S L KT R+P + L+ G Sbjct: 80 YVDNDVFRAVKAATPGAYTFILKATSEVP-RQLMHPKKKTVGVRIPDHLVAQALLAELGE 138 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 PL + + + + + ++D G +T+++ ILR Sbjct: 139 PLVSSTLLLPDEDEPLTQGWEIKERLDHVVDAVVDSGDCGT-RPTTVIDFSGGG-AEILR 196 Query: 194 PGG 196 G Sbjct: 197 RGA 199 >gi|325831973|ref|ZP_08165070.1| Sua5/YciO/YrdC/YwlC family protein [Eggerthella sp. HGA1] gi|325486294|gb|EGC88746.1| Sua5/YciO/YrdC/YwlC family protein [Eggerthella sp. HGA1] Length = 202 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 59/201 (29%), Positives = 92/201 (45%), Gaps = 8/201 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S++ R+A L G + PTETVYGL V + LY++K+R P+ V + Sbjct: 5 SSSKREAVAALKRGEAVIFPTETVYGLGVSVEAAASPEALYDLKERDRGKPVSWLVGGVD 64 Query: 69 MVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKK 126 + ++ A V L+ LA+ +WPGPLTL+++ S A + R+P + Sbjct: 65 DLDRYGAHVPDLARRLARAYWPGPLTLIVEAGDAVPAAFRSAAG--SIGLRMPDNDTALE 122 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKE--IPLIIDGGISKIGLESTIVNVQ 184 LIE G PLA SAN SG + L + + + D K G+ ST+++ Sbjct: 123 LIEAVGCPLATTSANISGLQAPGAF-DALDPRLAARVGVVVPDDTDDDKSGVASTVLDCT 181 Query: 185 CEKKVRILRPGGLEIETLKRA 205 RILR G + ++ Sbjct: 182 VN-PPRILREGAVAEADIRAV 201 >gi|91786903|ref|YP_547855.1| Sua5/YciO/YrdC/YwlC [Polaromonas sp. JS666] gi|91696128|gb|ABE42957.1| Sua5/YciO/YrdC/YwlC [Polaromonas sp. JS666] Length = 215 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 48/199 (24%), Positives = 81/199 (40%), Gaps = 10/199 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++A L G A+PT++ Y L + A L I+ + L D+S + Sbjct: 17 LKQAVNLLARGGVAAVPTDSSYALVCHLDDKAAADSLRRIRGVDDKHHLTLLCRDLSELA 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIET 130 +A VD L K PGP T +L+ LS + KT RVP T + L+E Sbjct: 77 NYARVDNKQFRLLKAATPGPYTFILEASKEVP-RRLSHPSRKTIGLRVPGHKTLQALLEL 135 Query: 131 YGHPLAIPSANRSGQIS----ITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC- 185 +G PL + G + N + + E+ +ID G +T++++ Sbjct: 136 HGAPLLATTLILPGPDNPPHEPLNDARDIRDQLEHELAAVIDAGACHQA-PTTVIDLTPM 194 Query: 186 --EKKVRILRPGGLEIETL 202 + ++R G ++ L Sbjct: 195 GEGGEPVVVRQGRGDLAAL 213 >gi|309800293|ref|ZP_07694466.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus infantis SK1302] gi|308116077|gb|EFO53580.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus infantis SK1302] Length = 159 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 50/148 (33%), Positives = 76/148 (51%), Gaps = 5/148 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + K L+ G + +PTETVYGL + + A+ +Y++K RP L +V+ + + Sbjct: 2 MEKIKHELENGGAVVLPTETVYGLFAKALDKKAVDHVYQLKCRPRDKALNLNVASLDDIL 61 Query: 72 KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P L L + F PGPLT++L+ + + +NL T FR+P T +LI Sbjct: 62 NFSRNQPTYLQQLVESFLPGPLTIILE--ANDKVPYWVNSNLTTVGFRMPSHPVTLELIR 119 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSS 157 +G PL PSAN SGQ S + IL Sbjct: 120 EFG-PLIGPSANISGQSSGVTFRKILHD 146 >gi|149640123|ref|XP_001515000.1| PREDICTED: similar to putative transmembrane protein TA-2 [Ornithorhynchus anatinus] Length = 878 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 45/207 (21%), Positives = 92/207 (44%), Gaps = 11/207 (5%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++++++ E + G IPT+TVY L P A+ + Y KK+ P+ +S + Sbjct: 613 ASSVKQIAEIMKNGGACGIPTDTVYVLVAACNRPDAVEKAYNTKKQAQDRPMSLWISSLR 672 Query: 69 MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANL-----KTACFRVP-C 121 ++ P+ + WP P+++V+ D L T+ ++ R+P C Sbjct: 673 QLEPAKHLFHPILWDFMEAAWPSPISVVVPRGDWIDQLGLKTSARYVGTPRSIAIRIPDC 732 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 T LI+ G P+A+ SAN +G+ T+ + + + ++ ++ G S + ST+V Sbjct: 733 SVTTHLIDLVG-PVAVTSANPTGEADTTHHDQVY-AKLGDKVDGVLCAGPSPENIASTVV 790 Query: 182 NVQC--EKKVRILRPGGLEIETLKRAI 206 + + R G + + + + Sbjct: 791 DCTKIESGNIGFFRVGIVPKSQVLQIL 817 >gi|28867414|ref|NP_790033.1| SUA5/yciO/yrdC family domain-containing protein [Pseudomonas syringae pv. tomato str. DC3000] gi|81732976|sp|Q88B46|RIMN_PSESM RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|28850648|gb|AAO53728.1| SUA5/yciO/yrdC family domain protein [Pseudomonas syringae pv. tomato str. DC3000] Length = 185 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 46/187 (24%), Positives = 75/187 (40%), Gaps = 4/187 (2%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + S +++A + + AG IA PTE V+GL D + A+ RL IK RP LI Sbjct: 1 MVSSWRVQQAAQNIRAGAVIAYPTEAVWGLGCDPWDEEAVYRLLAIKLRPVEKGLILIAD 60 Query: 66 DISMVK-KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 +I L L WPGP T ++ + T +T RV T Sbjct: 61 NIRQFDFLFEDFPELWLDRMASTWPGPNTWLVPHQ--NLLPEWITGIHETVALRVTDHPT 118 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + + PL SAN +G+ + + + +I ++ G + S I ++ Sbjct: 119 VRELCALVGPLISTSANPAGRPAARSRLRV-EQYFRGQINGVLGGSLGGRRNPSVIRDIA 177 Query: 185 CEKKVRI 191 + +R Sbjct: 178 TGQVMRA 184 >gi|324523357|gb|ADY48235.1| YrdC domain-containing protein [Ascaris suum] Length = 226 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 67/232 (28%), Positives = 109/232 (46%), Gaps = 20/232 (8%) Query: 2 QIMSITDSN---ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58 +I+ +TDS AL +A L++G IA+PT+T+YGL+ N +L+++K R M Sbjct: 3 KIIRLTDSTFEVALSRAVAVLESGGVIALPTDTIYGLSTTLGNAD---KLFKLKFRSRMK 59 Query: 59 PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 P +SD++ + K A + + +H + PGP+TLV + ++ + +T R Sbjct: 60 PFALFLSDVTEISKWA-IPTIGIHTMRRLLPGPVTLVFNR--SSRLPAEFNEGHRTIGIR 116 Query: 119 VPCG-FTKKLIETYG-HPLAIPSANRSG-QISITNVKHILSSSICKEIPLIIDGGI--SK 173 +P F L + G PLA SAN SG + +V+ + + LIIDG + Sbjct: 117 IPDHSFVHALSKRLGDTPLAQTSANLSGAAENPVSVED--FEDLWPGVDLIIDGDVLKDP 174 Query: 174 IGL----ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQ 221 G ST+VN+ I+R G T +R L D S+ + Sbjct: 175 TGKVSRRGSTVVNLCIPGTYSIIRDGCARSSTEERLRDCGLTAITDGESSVR 226 >gi|257471545|ref|ZP_05635544.1| dsRNA-binding protein, putative ribosome maturation factor (YrdC) [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|311086217|gb|ADP66299.1| dsRNA-binding protein, putative ribosome maturation factor (YrdC) [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086794|gb|ADP66875.1| dsRNA-binding protein, putative ribosome maturation factor (YrdC) [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087381|gb|ADP67461.1| dsRNA-binding protein, putative ribosome maturation factor (YrdC) [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087878|gb|ADP67957.1| dsRNA-binding protein, putative ribosome maturation factor (YrdC) [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 190 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 52/187 (27%), Positives = 78/187 (41%), Gaps = 8/187 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 N+L + L IA PTE+++GL D + A+++L +K R LI SD Sbjct: 8 NSLLYCIKMLHNDDVIAYPTESMFGLGCDPNSKKAVKKLLNLKNRSIEKGLILVASDFDQ 67 Query: 70 VKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TK 125 +K + + + LS K WPGP T +L T T T RV F Sbjct: 68 IKMYVNENILSNKQKKKIFFHWPGPFTFLLPAKPNT--PYWLTGKFNTVAVRVSAHFEII 125 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 KL +G + SAN S + + K+ PL ++G I S I+N+ Sbjct: 126 KLCNAFGQAVVSTSANISNMTPCFTSEEVFK-CFGKDFPL-LNGKIGNEKNPSKIINIIN 183 Query: 186 EKKVRIL 192 K +R + Sbjct: 184 GKLIRYV 190 >gi|94984865|ref|YP_604229.1| Sua5/YciO/YrdC/YwlC [Deinococcus geothermalis DSM 11300] gi|94555146|gb|ABF45060.1| Sua5/YciO/YrdC/YwlC [Deinococcus geothermalis DSM 11300] Length = 208 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 59/199 (29%), Positives = 86/199 (43%), Gaps = 11/199 (5%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + A+ +A E + AG + PTETV+GLA A RLY +K R P+ D Sbjct: 12 AQAVARAAERVTAGGVVGYPTETVWGLAARL---EASERLYALKGREPDKPVQVSCLDEE 68 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 ++ + WPGPLTLVL S L+ RVP L Sbjct: 69 TARRLTEAG-AAFDALAGLWPGPLTLVLPASSACP-PDLAPGGW--VGLRVPDHPVALAL 124 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G LA S N SGQ + + + + L+ DGG GL ST+V V ++ Sbjct: 125 LRACGGLLATTSLNPSGQPAARTFEEAQAYGLAPL--LLPDGGFPAQGLASTVVRVVGDE 182 Query: 188 KVRILRPGGLEIETLKRAI 206 + +LR G L ++ L+ + Sbjct: 183 -LEVLREGALPVQLLRERL 200 >gi|332881939|ref|ZP_08449581.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680174|gb|EGJ53129.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 185 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 49/185 (26%), Positives = 83/185 (44%), Gaps = 8/185 (4%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 ++ E L AG I PT+TV+G+ D+ N +A+ R++ IK+R LI VS I+M++ Sbjct: 5 QQITEILKAGGVILYPTDTVWGIGCDATNASAVARIFTIKQRSESKSLIILVSSITMLRD 64 Query: 73 HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLIETY 131 + + P ++ P T++ + + A T R V F +++I + Sbjct: 65 YIADLPQNILNYLQKVTEPTTIIYENP--QLLATNVIAADNTVAIRLVQDPFCQQMIAHF 122 Query: 132 GHPLAIPSANRSGQISITNVKHI---LSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 G P+ SAN SGQ + I L + +P D K S ++ + Sbjct: 123 GKPIVSTSANISGQPTPMCFADIPATLVAQCDYVVPYRQDDTAPK--KPSRLIKFDKNGE 180 Query: 189 VRILR 193 + ILR Sbjct: 181 LIILR 185 >gi|49081744|gb|AAT50272.1| PA0022 [synthetic construct] Length = 186 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 41/178 (23%), Positives = 65/178 (36%), Gaps = 4/178 (2%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A + G IA PTE V+GL D N A+ RL +K RP I ++I + Sbjct: 10 AARVVREGGVIAYPTEAVWGLGCDPWNEDAVYRLLALKARPVEKGPIVVAANIHQLDFLL 69 Query: 75 SVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGH 133 P WPGP T ++ + T + RV + + Sbjct: 70 EDLPDVWLDRLAGTWPGPNTWLVPHQE--RLPEWVTGVHDSVAVRVTDHPLVQELCHLTG 127 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 PL SAN +G+ + + E+ I+ G + S I ++ + +R Sbjct: 128 PLISTSANPAGRPAARTRLRV-EQYFHDELDAILGGALGGRRNPSLIRDLVTGQVIRP 184 >gi|256823825|ref|YP_003147788.1| SUA5/yciO/yrdC domain-containing protein [Kangiella koreensis DSM 16069] gi|256797364|gb|ACV28020.1| SUA5/yciO/yrdC domain protein [Kangiella koreensis DSM 16069] Length = 187 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 52/192 (27%), Positives = 88/192 (45%), Gaps = 9/192 (4%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 M+ + + A + + G IA PTE VYGL + AI+R+ +IK+RP LI Sbjct: 1 MAYINPFKMHYAAQRIQQGGVIAYPTEAVYGLGCHPKAEQAIQRILKIKRRPWQKGLILV 60 Query: 64 VSDISMVKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 S++ +K + S D + L F P+T +L + + ++ PL + R+ Sbjct: 61 ASNVEQIKPYLSDDGKA--LISCFNEQHKRPVTWLLPVHA--EVSPLLRGTHEKIAVRLS 116 Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 F K L + L SANR+GQ +T + + + E+ +II G S+ Sbjct: 117 TNPFVKALCDAANSALVSTSANRAGQPEMTKAEQV-RCQMGSELDMIIVGPTGGHTRPSS 175 Query: 180 IVNVQCEKKVRI 191 I++ Q + +R Sbjct: 176 IIDAQTREVLRA 187 >gi|332883355|gb|EGK03638.1| Sua5/YciO/YrdC/YwlC family protein [Dysgonomonas mossii DSM 22836] Length = 187 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 46/190 (24%), Positives = 89/190 (46%), Gaps = 8/190 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++KA E L +G I PT+T++G+ D+ N A+ R+YE+K+R LI + + Sbjct: 2 EEDIKKAFEVLVSGGLILYPTDTIWGIGCDATNEEAVHRVYELKRRVDSKALITLLDNPI 61 Query: 69 MVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + + P ++ L + PLT++ D ++ P A + R+ F+++ Sbjct: 62 KLDYYIDEVPSIAWDLIE-LSEKPLTIIYD--GARNVAPNLMAEDGSLAIRITKEKFSQE 118 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII--DGGISKIGLESTIVNVQ 184 L + + L SAN SG+ + N +S I + + I+ + S+I+ + Sbjct: 119 LCKRFRKALVSTSANISGEPAPANFDD-ISEEIKQGVDYIVKYRQDDTNKSKASSIIKLG 177 Query: 185 CEKKVRILRP 194 +V+I+R Sbjct: 178 KTGEVKIIRE 187 >gi|254447533|ref|ZP_05060999.1| Sua5/YciO/YrdC family protein [gamma proteobacterium HTCC5015] gi|198262876|gb|EDY87155.1| Sua5/YciO/YrdC family protein [gamma proteobacterium HTCC5015] Length = 175 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 43/179 (24%), Positives = 75/179 (41%), Gaps = 8/179 (4%) Query: 16 CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75 L G +A PTE V+GL D R A+R++ +K+RP LI ++I + Sbjct: 2 IAALQRGEVVAYPTEAVFGLGCDPRQELAVRQVLRLKQRPEEKGLILIAAEIDQLDHWLD 61 Query: 76 VDPLSLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYG 132 +D ++ + WPGP+T +L +T +T RV +L +G Sbjct: 62 MDAVTEQWPHVLERWPGPVTWLLPCRPST--PRWLRGQFETLAVRVTAHPQAAQLCRDFG 119 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 L SAN +G + + + + +G + STI++ Q ++ +R Sbjct: 120 GALVSTSANPAGLEPARSPQAVADYFPDM---VCAEGEVDVSAQPSTILDAQTQRVIRP 175 >gi|50954445|ref|YP_061733.1| translation factor [Leifsonia xyli subsp. xyli str. CTCB07] gi|50950927|gb|AAT88628.1| translation factor [Leifsonia xyli subsp. xyli str. CTCB07] Length = 232 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 56/211 (26%), Positives = 89/211 (42%), Gaps = 16/211 (7%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +R A + G + IPT+TVYG+A D+ +P A++RL + K R +P V ++ Sbjct: 15 TGMRLARGAIGRGELVVIPTDTVYGVAADAFSPAAVQRLLDAKGRGRQSPPPVLVPGLAA 74 Query: 70 VKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128 + A V L + FWPG LT+VL T+ T R+P + Sbjct: 75 LAALAERVPAEVEALVEAFWPGGLTIVLPAAPLLVWGLGETSG--TVALRMPQDRIALEL 132 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE--------STI 180 PLA+ SAN SG+ + + + + +DGG + + STI Sbjct: 133 LAETGPLAVSSANLSGRPAARTAVEA-EGMLGDAVAVYLDGGEAGSAYDRVEGRDSSSTI 191 Query: 181 VNVQ----CEKKVRILRPGGLEIETLKRAIS 207 ++ +RILR G + E L+ Sbjct: 192 LDATALASGSGGLRILRHGVVTAERLRAVAG 222 >gi|298346219|ref|YP_003718906.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus curtisii ATCC 43063] gi|304390018|ref|ZP_07371972.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|298236280|gb|ADI67412.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus curtisii ATCC 43063] gi|304326500|gb|EFL93744.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 215 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 56/221 (25%), Positives = 91/221 (41%), Gaps = 22/221 (9%) Query: 1 MQIMSI-------TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK 53 M+I+ TD + A + +PT+TVYG+A P A+ RL K Sbjct: 1 MKIIDALTGPITQTDLAVIDAAV---KRDELLVMPTDTVYGIASVPFAPVAVSRLQNAKG 57 Query: 54 RPAMNPLICHVSDISMVKKHASVDP--------LSLHLAKLFWPGPLTLVLDLLSTTDIH 105 R P VS + ++ + +P + LA+ FWPG LT+++ Sbjct: 58 RGEDFPPPVLVSGPAALEDLMAPEPQASASQRRAARLLAERFWPGALTIIVTANPALGWD 117 Query: 106 PLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPL 165 T T R P I Y PLA+ SAN + T++ + + + + Sbjct: 118 LGQT--HGTIALRQPDHPRALEILRYTGPLAVTSANLHTRPPATDIAAATN-YFGERVSV 174 Query: 166 IIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAI 206 +D G+S G STIV + + R+LR G + + + A+ Sbjct: 175 YVDAGVSPSGHPSTIVRLTQDSP-RLLRQGDIPLSDILAAL 214 >gi|315657274|ref|ZP_07910156.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315491746|gb|EFU81355.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 215 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 56/221 (25%), Positives = 92/221 (41%), Gaps = 22/221 (9%) Query: 1 MQIMSI-------TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK 53 M+I+ TD + A + +PT+TVYG+A P A+ RL K Sbjct: 1 MKIIDALTGPITQTDLAVIDAAV---KRDELLVMPTDTVYGIASVPFAPVAVSRLQNAKG 57 Query: 54 RPAMNPLICHVSDISMVKKHASVDP--------LSLHLAKLFWPGPLTLVLDLLSTTDIH 105 R P VS + ++ + +P + LA+ FWPG LT+++ Sbjct: 58 RGEDFPPPVLVSGPAALEDLMAPEPQASASQRRAARLLAERFWPGALTIIVTANPALGWD 117 Query: 106 PLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPL 165 T T R P I Y PLA+ SAN + T++ + + + + Sbjct: 118 LGQT--HGTIALRQPDHPRALEILRYTGPLAVTSANLHTRPPATDIAAATN-YFGERVSV 174 Query: 166 IIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAI 206 +D G+S G STIV++ + R+LR G + + + A+ Sbjct: 175 YVDAGVSPSGHPSTIVSLTQDSP-RLLRQGDIPLSDILAAL 214 >gi|153206741|ref|ZP_01945582.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii 'MSU Goat Q177'] gi|165918501|ref|ZP_02218587.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii RSA 334] gi|212218383|ref|YP_002305170.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii CbuK_Q154] gi|120577104|gb|EAX33728.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii 'MSU Goat Q177'] gi|165917747|gb|EDR36351.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii RSA 334] gi|212012645|gb|ACJ20025.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii CbuK_Q154] Length = 204 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 42/207 (20%), Positives = 82/207 (39%), Gaps = 8/207 (3%) Query: 1 MQIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56 M + I N +++A E + G +A T++ Y L N + R+ +++ Sbjct: 1 MATIHIHPDNPQARLIKQAVETVKTGGILAYSTDSGYALGCRLGNKSGAERIRRLRQLNK 60 Query: 57 MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 +P D+S + +A + K PGP T +L L KT Sbjct: 61 AHPFTLLCRDLSEIAVYARIANPVFRFLKAHTPGPYTFILSATRAVP-RQLQHPKRKTIG 119 Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 RVP + ++E PL + G+ + + ++ LI+D G+ + Sbjct: 120 IRVPDHRVIQAILEQLQEPLMNVTLIFPGEQWAPSEISEREDELAAQVDLIVDSGVCGV- 178 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETL 202 +T++++ + + ILR G +I + Sbjct: 179 EPTTVIDL-VDGEPTILREGKGDISEI 204 >gi|152988004|ref|YP_001345419.1| hypothetical protein PSPA7_0023 [Pseudomonas aeruginosa PA7] gi|212288212|sp|A6UX84|RIMN_PSEA7 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|150963162|gb|ABR85187.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7] Length = 185 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 41/178 (23%), Positives = 65/178 (36%), Gaps = 4/178 (2%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A + G IA PTE V+GL D N A+ RL +K RP LI + I + Sbjct: 10 AARVVREGGVIAYPTEAVWGLGCDPWNEDAVYRLLALKARPVEKGLIVVAAHIHQLDFLL 69 Query: 75 SVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGH 133 P WPGP T ++ + T + RV + + Sbjct: 70 EDLPDVWLERLAGTWPGPNTWLVPHQD--RLPEWVTGVHDSVAVRVTDHPLVQELCYLTG 127 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 PL SAN +G+ + + E+ ++ G + S I ++ + +R Sbjct: 128 PLISTSANPAGRPAARTRLRV-EQYFHDELDGVLGGALGGRRNPSLIRDLVTGQVIRP 184 >gi|145340914|ref|XP_001415562.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144575785|gb|ABO93854.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 195 Score = 143 bits (362), Expect = 3e-32, Method: Composition-based stats. Identities = 60/196 (30%), Positives = 86/196 (43%), Gaps = 6/196 (3%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A L G IA+PT+T+YG A + N A+RRLYEIK R A PL V D+ V + Sbjct: 1 AAAALRRGGVIAVPTDTIYGFAASAANGDAVRRLYEIKGRRAGVPLAIAVGDVRDVGTYG 60 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIH--PLSTANLKTACFRVPCG-FTKKLIETY 131 L PGP T++L P + RVP F +++ + Sbjct: 61 DDGHLREGALARLLPGPTTVLLRRRRGDAGRATPELNPGVDLIGIRVPAHDFVREVCRAH 120 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG-ISKIGLESTIVNVQCEKKVR 190 G +A+ SANRSG+ S T + + + + DGG I L STIV++ Sbjct: 121 GGAIALTSANRSGETSATAAEE--FAELWDACDEVFDGGAIPAKRLGSTIVDLSSRANDF 178 Query: 191 ILRPGGLEIETLKRAI 206 + G + L R + Sbjct: 179 AIVRAGERCDELVRVL 194 >gi|221135276|ref|ZP_03561579.1| Sua5/YciO/YrdC family protein [Glaciecola sp. HTCC2999] Length = 188 Score = 143 bits (362), Expect = 3e-32, Method: Composition-based stats. Identities = 46/191 (24%), Positives = 66/191 (34%), Gaps = 8/191 (4%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 M L + + G I PTE V+GL D A+ + IK RP LI Sbjct: 1 MITIPPVELEQFISAFEQGEVIGYPTEAVFGLGCDPDIADAVNNVLAIKTRPQDKGLILI 60 Query: 64 VSDISMVKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 + + + + L + WPGP T ++ TT T T RV Sbjct: 61 AATFEQLLPYIDISELEPEIINKVHATWPGPYTWIMPKAKTT--PDYLTGGRNTIAVRVS 118 Query: 121 CGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 L PL SAN SG+ ++ I + + IDG + S Sbjct: 119 AHPTVIALCNAVNKPLVSTSANPSGETPARTLEQI--KTYFADTIFAIDGEVDHNAQPSK 176 Query: 180 IVNVQCEKKVR 190 I + K +R Sbjct: 177 IQDAVTGKVLR 187 >gi|148235871|ref|NP_001082069.1| putative transmembrane protein TA-2 [Xenopus laevis] gi|12007284|gb|AAG45109.1|AF310008_1 putative transmembrane protein TA-2 [Xenopus laevis] Length = 912 Score = 143 bits (362), Expect = 3e-32, Method: Composition-based stats. Identities = 45/208 (21%), Positives = 88/208 (42%), Gaps = 11/208 (5%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 T ++++R+ E + G IPT+TVY L P A+ + Y+ K++ P+ +S Sbjct: 631 TRTSSVRQIAEIMKNGGICGIPTDTVYVLVAACNQPDAVEKAYKTKRQAQDRPMSLWISS 690 Query: 67 ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDI-----HPLSTANLKTACFRVP 120 + + PL WP ++LV+ ++ ++ R+P Sbjct: 691 LEQLASAKHLFSPLLWDFMHKAWPSSISLVIPRGPWLEVLGAKESSKYIGTPQSIAIRIP 750 Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 C T LI+ G P+A+ SAN SG+ T+ + + + ++ ++ G S + ST Sbjct: 751 DCTVTTHLIDMVG-PIAVTSANPSGEADTTHHNQVF-AKLGDKVDGVLCDGPSPENIAST 808 Query: 180 IVNVQ--CEKKVRILRPGGLEIETLKRA 205 +V+ + R G + + + Sbjct: 809 VVDCTKIDSGNLGFFRVGIVPKSQVLQI 836 >gi|297196275|ref|ZP_06913673.1| translation factor SUA5 [Streptomyces pristinaespiralis ATCC 25486] gi|297153146|gb|EDY66899.2| translation factor SUA5 [Streptomyces pristinaespiralis ATCC 25486] Length = 206 Score = 143 bits (362), Expect = 3e-32, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 65/193 (33%), Gaps = 4/193 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + +G +A PT++ + L + I R+ I+ + + + + Sbjct: 17 ISTVADSIRSGALVAYPTDSCFALGCRLGSRDGIGRIRSIRNLDDRHHFTLVCQNFAQLG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 + VD K PG T +L L KT R+P + L+ Sbjct: 77 QFVQVDNDVFRAIKAATPGSYTFILPATKEVP-RQLLHPKKKTVGVRIPDHVVAQALVAE 135 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G PL + + + + + ++D G +T+++ + Sbjct: 136 LGEPLLSSTLLMPDEDEPMTQGWEIKERLDHVVDAVVDSGDCGT-EPTTVIDFSGAEP-E 193 Query: 191 ILRPGGLEIETLK 203 I+R G + + Sbjct: 194 IVRRGAGDPSRFE 206 >gi|304389436|ref|ZP_07371399.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315656683|ref|ZP_07909570.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|304327246|gb|EFL94481.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315492638|gb|EFU82242.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 207 Score = 143 bits (362), Expect = 3e-32, Method: Composition-based stats. Identities = 40/207 (19%), Positives = 80/207 (38%), Gaps = 8/207 (3%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 +I + N +LR+ E + G +A PT++ Y L N + R+ +I++ Sbjct: 4 KIFELHPENPQARSLRQIVEIIQDGGIMAYPTDSGYALGCALANGAGLERIRKIRQLDDK 63 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 + D S + + V L K PGP T +L L+ T Sbjct: 64 HHFTLVCHDFSQLGQLVMVSNSQYRLIKSLTPGPYTFILKGTKEVPRATLNKKKH-TVGV 122 Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+P L+E G + + G + + + + + +I+D I Sbjct: 123 RIPAHKVALSLVEAMGEAILSCTLLLPGDAEPLSDPVEVIAKLGHLLDVIVDSPIGSD-Q 181 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLK 203 +T++N++ + + + R G ++ L+ Sbjct: 182 ATTVINMEDDVPI-VTREGAGPVDFLE 207 >gi|34496005|ref|NP_900220.1| Sua5/YciO/YrdC family protein [Chromobacterium violaceum ATCC 12472] gi|81656937|sp|Q7P0L7|RIMN_CHRVO RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|34101858|gb|AAQ58226.1| probable Sua5/YciO/YrdC family protein [Chromobacterium violaceum ATCC 12472] Length = 193 Score = 143 bits (362), Expect = 3e-32, Method: Composition-based stats. Identities = 49/180 (27%), Positives = 75/180 (41%), Gaps = 6/180 (3%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 ++A + L G IA TE+ YGL + AIRR+ IK RP LI +D ++ Sbjct: 18 QRARKQLRDGGVIAYSTESCYGLGCRPLDARAIRRVLAIKARPNHKGLIVIAADFEQIRH 77 Query: 73 HASVDPLSLHL-AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIET 130 + +WPGP T +L ++ + P RV L Sbjct: 78 LVKPLSAAQRAELARYWPGPYTFLLP--ASRRVPPALRGRHHKIAVRVTAHGEAAALCRR 135 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G L SANR+GQ S+ + + K L + G I K STI++++ + +R Sbjct: 136 LGTALVSTSANRAGQQSLKTARACRMAFKDK--VLTLPGRIGKRRKPSTIIDLESGRVLR 193 >gi|315654803|ref|ZP_07907708.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus curtisii ATCC 51333] gi|315490764|gb|EFU80384.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus curtisii ATCC 51333] Length = 215 Score = 143 bits (362), Expect = 4e-32, Method: Composition-based stats. Identities = 56/222 (25%), Positives = 93/222 (41%), Gaps = 22/222 (9%) Query: 1 MQIMSI-------TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK 53 M+I+ TD + A + +PT+TVYG+A P A+ RL K Sbjct: 1 MKIIDALTGPITQTDLAVIDAAV---KRDELLVMPTDTVYGIASVPFAPVAVSRLQNAKG 57 Query: 54 RPAMNPLICHVSDISMVKKHASVDP--------LSLHLAKLFWPGPLTLVLDLLSTTDIH 105 R P VS + ++ + +P + LA+ FWPG LT+++ Sbjct: 58 RGEDFPPPVLVSGPAALEDLMAPEPQASASQRRAARVLAERFWPGALTIIVTANPALGWD 117 Query: 106 PLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPL 165 T T R P I Y PLA+ SAN + T++ + + + + Sbjct: 118 LGQT--HGTIALRQPDHPRALEILRYTGPLAVTSANLHTRPPATDIAAATN-YFGERVSV 174 Query: 166 IIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS 207 +D G+S G STIV++ + R+LR G + + + A++ Sbjct: 175 YVDAGVSPSGHPSTIVSLTQDSP-RLLRQGDIPLSDILAALA 215 >gi|313669306|ref|YP_004049590.1| hypothetical protein NLA_20420 [Neisseria lactamica ST-640] gi|313006768|emb|CBN88238.1| conserved hypothetical protein [Neisseria lactamica 020-06] Length = 200 Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats. Identities = 46/192 (23%), Positives = 80/192 (41%), Gaps = 5/192 (2%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I ++A RK +L G +A PTE+ YGL A+ +L +KKRP + Sbjct: 12 MLFPRIIAASAQRKLSVYLKKGGLVAYPTESCYGLGCLPTLAKALGKLAHLKKRPQHKGM 71 Query: 61 ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I + ++ + SL + + WP P T +L + + L R+ Sbjct: 72 IVIGNQFEQLQPLLQMPSESLQAMLRKEWPAPKTFLLS-AKSCVLPELRGKQRSKLAVRI 130 Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P ++L + G PL S NR+G+ + + + I+ G I + S Sbjct: 131 PDHAGARRLCQALGMPLVSTSCNRAGKRACRTEREVRRQF--GRDVWIVGGRIGRQKSPS 188 Query: 179 TIVNVQCEKKVR 190 I++ + K++R Sbjct: 189 QIIDGETGKRLR 200 >gi|261378564|ref|ZP_05983137.1| protein RimN [Neisseria cinerea ATCC 14685] gi|269145118|gb|EEZ71536.1| protein RimN [Neisseria cinerea ATCC 14685] Length = 200 Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats. Identities = 48/192 (25%), Positives = 81/192 (42%), Gaps = 5/192 (2%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I ++A RK +L G +A PTE+ YGL A+ +L +KKRP + Sbjct: 12 MLFPRIIAASAQRKLRVYLKKGGLVAYPTESCYGLGCLPTLANALSKLTHLKKRPQHKGM 71 Query: 61 ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I + ++ + +L + WP P T +L L + + L RV Sbjct: 72 IVIGNQFEQLRPLLKMPSENLQNILIKEWPAPKTFLL-LAKSGVLPKLRGKRRNKLAVRV 130 Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P ++L + G PL S NR+G+ + + + +I G I + L S Sbjct: 131 PDHDGARRLCQVLGMPLVSTSCNRAGKRACRTEREVKRQF--GRNVWVIGGRIGRQKLPS 188 Query: 179 TIVNVQCEKKVR 190 I++ + K++R Sbjct: 189 QIIDGETGKRLR 200 >gi|296160300|ref|ZP_06843118.1| SUA5/yciO/yrdC domain protein [Burkholderia sp. Ch1-1] gi|295889511|gb|EFG69311.1| SUA5/yciO/yrdC domain protein [Burkholderia sp. Ch1-1] Length = 203 Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats. Identities = 59/194 (30%), Positives = 85/194 (43%), Gaps = 11/194 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + A L G + +PT+T Y A D N A RLYEIKKR PL VS + Sbjct: 4 IEHAATILKNGGVLMVPTDTNYAFAADPWNVEACARLYEIKKRDVKKPLTLFVSRPEDLW 63 Query: 72 KHASVDPLSLH----LAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCGFTKK 126 +A V L WPGPL VL HP L ++ C R Sbjct: 64 VYAEVPDAQTEAVNSLMARHWPGPLNFVLKKSPAAPNHPYLKEDSISVVCNR--NPVLNG 121 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSS-ICKEIPLIIDGG--ISKIGLESTIVNV 183 LI +G PLA+ SAN SG + + + L+S + I+ G + + STI+++ Sbjct: 122 LINLFGRPLAMTSANVSGVEHDSLIDYELASRTFPDAVDYIVPPGGMVPQTTRSSTIISL 181 Query: 184 QCEKKVRILRPGGL 197 + +++LR G + Sbjct: 182 L-DGTLKVLRQGDV 194 >gi|296131063|ref|YP_003638313.1| Sua5/YciO/YrdC/YwlC family protein [Cellulomonas flavigena DSM 20109] gi|296022878|gb|ADG76114.1| Sua5/YciO/YrdC/YwlC family protein [Cellulomonas flavigena DSM 20109] Length = 205 Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats. Identities = 32/189 (16%), Positives = 66/189 (34%), Gaps = 4/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++ + L IA PT+++Y L N R+ I+ + D + Sbjct: 14 PRSIAQVVAMLRDDAVIAYPTDSMYALGTRLGNHDGAERIRRIRNLDDRHHFTLVCCDFA 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + + +D + K PGP T +L L+ ++ R+P + Sbjct: 74 QLGQLVHLDNSAFRAIKSATPGPYTFILPATPEVP-RRLAHPKKRSVGVRIPDDPVALAI 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL S G + + + + ++D G + +T+V+ + Sbjct: 133 LRELGEPLVSSSLLVPGHDWPMSEGWQIKEELDDVLDAVVDAG-DRGSEPTTVVDWT-DG 190 Query: 188 KVRILRPGG 196 ++R G Sbjct: 191 APEVVREGA 199 >gi|313885913|ref|ZP_07819653.1| Sua5/YciO/YrdC/YwlC family protein [Porphyromonas asaccharolytica PR426713P-I] gi|312924668|gb|EFR35437.1| Sua5/YciO/YrdC/YwlC family protein [Porphyromonas asaccharolytica PR426713P-I] Length = 195 Score = 142 bits (360), Expect = 5e-32, Method: Composition-based stats. Identities = 43/187 (22%), Positives = 82/187 (43%), Gaps = 6/187 (3%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +A+R+A + L G I PT+T++GL D+ N A+ RL +K RP P++ V Sbjct: 12 SAVREAVDVLQRGGIILYPTDTIWGLGCDATNEEAVDRLSALKGRPTGKPMLMLVDSDVR 71 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 ++ + P PLT++ ++ P A+ + R+ +++ Sbjct: 72 IQSYVRTVPSMAFQLIDVAVRPLTIIYP--EGRNVAPQLLADDGSIGIRIASDTLCQEIC 129 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--GLESTIVNVQCE 186 PL SAN +G S N + ++ K + ++ + G+ S I+ + Sbjct: 130 RMLRRPLVSTSANLAGTSSPHNYSE-IDPALIKMVDYVVPLRQDEHIDGMPSDIIKLGIN 188 Query: 187 KKVRILR 193 +VR++R Sbjct: 189 NEVRVIR 195 >gi|190576014|ref|YP_001973859.1| hypothetical protein Smlt4185 [Stenotrophomonas maltophilia K279a] gi|212288232|sp|B2FIS1|RIMN_STRMK RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|190013936|emb|CAQ47576.1| conserved hypothetical protein [Stenotrophomonas maltophilia K279a] Length = 186 Score = 142 bits (360), Expect = 5e-32, Method: Composition-based stats. Identities = 42/184 (22%), Positives = 70/184 (38%), Gaps = 7/184 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L A L AG IA PTE V+GL D + A+ + +K+RP +I +D++ ++ Sbjct: 6 LDSAVATLRAGGVIAYPTEAVWGLGCDPSHEAAVHMVLRLKQRPIEKGMILVAADLAQLE 65 Query: 72 KHAS---VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + WPG T +L P T R+ +L Sbjct: 66 GWVRLQALPDARQRAVLASWPGANTWILPAGPRAQ--PWVTGEHSGIAVRISAHPLVAEL 123 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +G PL SAN +G+ + L + + + I+DG + + I + Sbjct: 124 CRAWGGPLVSTSANLAGEPPARR-REELDPRLLRLLDGILDGETGGLAQPTPIRDALSGN 182 Query: 188 KVRI 191 +R Sbjct: 183 VLRS 186 >gi|29654232|ref|NP_819924.1| sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii RSA 493] gi|154706053|ref|YP_001424357.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii Dugway 5J108-111] gi|161829815|ref|YP_001596797.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii RSA 331] gi|29541498|gb|AAO90438.1| sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii RSA 493] gi|154355339|gb|ABS76801.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii Dugway 5J108-111] gi|161761682|gb|ABX77324.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii RSA 331] Length = 204 Score = 142 bits (360), Expect = 5e-32, Method: Composition-based stats. Identities = 42/207 (20%), Positives = 82/207 (39%), Gaps = 8/207 (3%) Query: 1 MQIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56 M + I N +++A E + G +A T++ Y L N + R+ +++ Sbjct: 1 MATIHIHPDNPQARLIKQAVETVKTGGILAYSTDSGYALGCGLGNKSGAERIRRLRQLNK 60 Query: 57 MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 +P D+S + +A + K PGP T +L L KT Sbjct: 61 AHPFTLLCRDLSEIAVYARIANPVFRFLKAHTPGPYTFILSATRAVP-RQLQHPKRKTIG 119 Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 RVP + ++E PL + G+ + + ++ LI+D G+ + Sbjct: 120 IRVPDHRVIQAILEQLQEPLMNVTLIFPGEQWAPSEISEREDELAAQVDLIVDSGVCGV- 178 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETL 202 +T++++ + + ILR G +I + Sbjct: 179 EPTTVIDL-VDGEPTILREGKGDISEI 204 >gi|304309712|ref|YP_003809310.1| putative translation factor (SUA5) [gamma proteobacterium HdN1] gi|301795445|emb|CBL43643.1| putative translation factor (SUA5) [gamma proteobacterium HdN1] Length = 193 Score = 142 bits (360), Expect = 5e-32, Method: Composition-based stats. Identities = 47/190 (24%), Positives = 84/190 (44%), Gaps = 9/190 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++ L +A + L G IA PTE V+GL+ D NP A++R+ ++K+R L+ ++ Sbjct: 5 TSRLPQAVKILHEGGVIACPTEAVWGLSCDPFNPMAVQRILDLKQRDPSKGLLLVAANEQ 64 Query: 69 MVKK-HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + A + P+ L + WPGP T ++ + P N R+ + Sbjct: 65 AIAPLLAHLAPVLLERLRAHWPGPFTFLIPD-PQNWVPPYVKGNHPHVAVRISAHPLVHR 123 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSIC-----KEIPLIIDGGISKIGLESTIV 181 L E +G PL SAN+ G + + L + + + P I+ G + I+ Sbjct: 124 LCEAFGGPLVSTSANQQGAPPARS-ETDLRNWLNTLENTADRPHILPGSTGGQTNPTRII 182 Query: 182 NVQCEKKVRI 191 ++ + VR Sbjct: 183 DLMSGETVRP 192 >gi|283850258|ref|ZP_06367547.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio sp. FW1012B] gi|283574284|gb|EFC22255.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio sp. FW1012B] Length = 212 Score = 142 bits (360), Expect = 6e-32, Method: Composition-based stats. Identities = 50/203 (24%), Positives = 85/203 (41%), Gaps = 10/203 (4%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 +L A L G + PTET + L + + A+ R+ IK RPA PL V +++ + Sbjct: 5 SLATAARVLSQGGCLVYPTETFFALGALATHAGALARIVAIKARPATKPLPLLVGELAHL 64 Query: 71 KKHASVDPLS-------LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCG 122 ++ L LA FWPGPL+LV+ ++ L R P Sbjct: 65 ERIVPDGFLDGPLGEDFRALAGRFWPGPLSLVVPCRE--ELPGLVKDGQGRVSVRWTPHP 122 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 L G + SAN SG+ + + + + L+ +G G ST++ Sbjct: 123 TAAALCRLAGGAIVATSANVSGKPPAARAEDLDPAVVSAADGLVTEGPRPSGGQASTVIG 182 Query: 183 VQCEKKVRILRPGGLEIETLKRA 205 + +++ + R G + + TL+ A Sbjct: 183 LLGGRRLVLFRDGAVAVATLRAA 205 >gi|83642946|ref|YP_431381.1| putative translation factor (SUA5) [Hahella chejuensis KCTC 2396] gi|123535430|sp|Q2SQW8|RIMN_HAHCH RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|83630989|gb|ABC26956.1| putative translation factor (SUA5) [Hahella chejuensis KCTC 2396] Length = 184 Score = 142 bits (360), Expect = 6e-32, Method: Composition-based stats. Identities = 41/181 (22%), Positives = 67/181 (37%), Gaps = 5/181 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 ++KA L G +A PTE V+GL D A+ R+ ++K+RP LI I Sbjct: 6 IQKAVSVLSRGGVLAYPTEAVWGLGCDPSCEDAVNRILQLKRRPWRKGLILVSGQIEHFS 65 Query: 72 KHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + + WPGP+T V+ PL RV +L + Sbjct: 66 QLLDRLPQQQKDQILATWPGPVTWVVPDPGVY--APLVRGAHDAIAIRVTAHPLVVELTK 123 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 +G P+ SAN + + + + + G +S + S I + + Sbjct: 124 AFGGPIVSTSANPATREPARTLFDC-RRYFKSGVDHYLPGKLSGLSKPSQIRDAATGAIL 182 Query: 190 R 190 R Sbjct: 183 R 183 >gi|256424924|ref|YP_003125577.1| Sua5/YciO/YrdC/YwlC family protein [Chitinophaga pinensis DSM 2588] gi|256039832|gb|ACU63376.1| Sua5/YciO/YrdC/YwlC family protein [Chitinophaga pinensis DSM 2588] Length = 189 Score = 142 bits (359), Expect = 6e-32, Method: Composition-based stats. Identities = 43/189 (22%), Positives = 83/189 (43%), Gaps = 8/189 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 N + + + L +G I PT+T++G+ D+ + A+++++ +K RP L+ ++D+ Sbjct: 5 ENDISASLQVLRSGGLILYPTDTIWGIGCDATDEAAVKKVFTLKDRPEAKSLVILLADVR 64 Query: 69 MVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKK 126 + K+ A P + F P T++ + D+ P + T R V F + Sbjct: 65 DLLKYVAHPSPEIADILAGF-DRPTTVIYE--GALDLAPNVINSDGTVAIRIVKDTFCRH 121 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--GLESTIVNVQ 184 LI+ PL SAN SGQ S + I + ++ S I+ + Sbjct: 122 LIKRLRKPLVSTSANLSGQPSPATFAEVSPEIING-VDYVVSYRQDDTTPAQASRIIKLL 180 Query: 185 CEKKVRILR 193 + V+++R Sbjct: 181 KDGSVQVIR 189 >gi|15835032|ref|NP_296791.1| hypothetical protein TC0414 [Chlamydia muridarum Nigg] gi|270285197|ref|ZP_06194591.1| hypothetical protein CmurN_02078 [Chlamydia muridarum Nigg] gi|270289216|ref|ZP_06195518.1| hypothetical protein CmurW_02138 [Chlamydia muridarum Weiss] gi|301336593|ref|ZP_07224795.1| hypothetical protein CmurM_02130 [Chlamydia muridarum MopnTet14] gi|7190456|gb|AAF39270.1| conserved hypothetical protein [Chlamydia muridarum Nigg] Length = 280 Score = 142 bits (359), Expect = 6e-32, Method: Composition-based stats. Identities = 62/198 (31%), Positives = 97/198 (48%), Gaps = 16/198 (8%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L + E + +G A PT+TVYGL V P A ++L+ +K+R L +VS + ++ Sbjct: 2 LSQHIERIRSGQVFAFPTDTVYGLGVSFLIPEADKQLFALKRRNPQKALSVYVSSLEELE 61 Query: 72 KHAS--VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLI 128 A + S+ +A+ F PGPLTL+ H + KT FR V K++I Sbjct: 62 YVAQRRLGEASIKIAQKFLPGPLTLITK-------HNNPRFSQKTLGFRIVEHPIVKQII 114 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 + G PL SAN SG S + + K+I +I G IGLEST+V+ E++ Sbjct: 115 QEVG-PLLATSANVSGFPSAVSSDEVKQDFPEKDILVI--SGTCSIGLESTVVDA--EER 169 Query: 189 VRILRPGGLEIETLKRAI 206 + I R G + ++ + Sbjct: 170 I-IYREGVVSAAEIEDVL 186 >gi|313159480|gb|EFR58843.1| Sua5/YciO/YrdC/YwlC family protein [Alistipes sp. HGB5] Length = 193 Score = 142 bits (359), Expect = 6e-32, Method: Composition-based stats. Identities = 41/186 (22%), Positives = 84/186 (45%), Gaps = 8/186 (4%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 +A + AG I PT+TV+GL D+ N A+ R+Y++K+ ++ + MV + Sbjct: 12 DEAVRVMKAGGIILYPTDTVWGLGCDATNAEAVERIYKLKRSENKKSMLVLCASADMVVR 71 Query: 73 HASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 + + P ++ + +L PLT +L + + +T R+P F ++++ Sbjct: 72 YVNKAPGIAFEVMELAT-SPLTAILPGAA--GVAENLIPEERTLGVRIPDHEFCRRILRG 128 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS--KIGLESTIVNVQCEKK 188 G P+ SAN SG+ + + + I + +++ S+I+ + Sbjct: 129 LGRPVVSTSANISGEATPAGLAEVSREIIDG-VDFVVNPRFEGKPTKKASSIIAFGEGGE 187 Query: 189 VRILRP 194 V+I+R Sbjct: 188 VKIIRE 193 >gi|152994766|ref|YP_001339601.1| SUA5/yciO/yrdC domain-containing protein [Marinomonas sp. MWYL1] gi|212288210|sp|A6VT87|RIMN_MARMS RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|150835690|gb|ABR69666.1| SUA5/yciO/yrdC domain [Marinomonas sp. MWYL1] Length = 185 Score = 142 bits (359), Expect = 6e-32, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 67/184 (36%), Gaps = 5/184 (2%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 ++ + + + G IA PTE V+GL D N +A+RR+ +K RP LI Sbjct: 5 TSVEELADIIRQGGVIAYPTEAVWGLGCDPFNESAVRRILTLKSRPESKGLILVAGAQEE 64 Query: 70 VKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + +D + P + V+ TT ++ R+ ++L Sbjct: 65 LSPWLNLLDDKAAQRLISLNETPTSWVVP--DTTITPSWVRGEHQSVAIRLSQHQPVQRL 122 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + + SAN +G + K + I I D + S + ++ + Sbjct: 123 CAAFQGVIVSTSANPAGLEPAMSAKEV-HQYFGCNIDAIFDAPLGDASQPSQVRDILTDN 181 Query: 188 KVRI 191 R Sbjct: 182 LFRA 185 >gi|15617088|ref|NP_240301.1| hypothetical protein BU494 [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681840|ref|YP_002468226.1| dsRNA-binding protein, putative ribosome maturation factor (YrdC) [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682395|ref|YP_002468779.1| dsRNA-binding protein, putative ribosome maturation factor (YrdC) [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|11387305|sp|P57561|RIMN_BUCAI RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|25305375|pir||C84987 hypothetical protein [imported] - Buchnera sp. (strain APS) gi|10039153|dbj|BAB13187.1| hypothetical protein [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219622128|gb|ACL30284.1| dsRNA-binding protein, putative ribosome maturation factor (YrdC) [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624683|gb|ACL30838.1| dsRNA-binding protein, putative ribosome maturation factor (YrdC) [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 175 Score = 142 bits (359), Expect = 7e-32, Method: Composition-based stats. Identities = 50/179 (27%), Positives = 74/179 (41%), Gaps = 8/179 (4%) Query: 18 FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77 L IA PTE+++GL D + A+++L +K R LI SD +K + + + Sbjct: 1 MLHNDDVIAYPTESMFGLGCDPNSKKAVKKLLNLKNRSIEKGLILVASDFDQIKMYVNEN 60 Query: 78 PLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGH 133 LS K WPGP T +L T T T RV F KL +G Sbjct: 61 ILSNKQKKKIFFHWPGPFTFLLPAKPNT--PYWLTGKFNTVAVRVSAHFEIIKLCNAFGQ 118 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192 + SAN S + + K+ PL ++G I S I+N+ K +R + Sbjct: 119 AVVSTSANISNMTPCFTSEEVFK-CFGKDFPL-LNGKIGNEKNPSKIINIINGKLIRYV 175 >gi|297538007|ref|YP_003673776.1| Sua5/YciO/YrdC/YwlC family protein [Methylotenera sp. 301] gi|297257354|gb|ADI29199.1| Sua5/YciO/YrdC/YwlC family protein [Methylotenera sp. 301] Length = 207 Score = 142 bits (359), Expect = 7e-32, Method: Composition-based stats. Identities = 39/181 (21%), Positives = 69/181 (38%), Gaps = 4/181 (2%) Query: 16 CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75 E L G IA PT++ Y L + A R+ +I+ + ++S + +A Sbjct: 21 AEILRDGGVIAYPTDSGYALGCMLGHGDAQTRIRQIRGVDDKHLFTLLCRNLSELGNYAV 80 Query: 76 VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134 V L K PG T +L+ L T RVP + ++E P Sbjct: 81 VSNSQFRLLKANTPGAYTFILNATREVP-RKLQHPKRNTVGLRVPDHAVVQAILEEIDAP 139 Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194 L + + S+ + + + + L+ID G G S ++N+ + ++R Sbjct: 140 LLSMTLYIPDEDSVLSEAWEIRDKLEHVVDLVIDVGHCVAGATS-VINLTGDAP-ELIRE 197 Query: 195 G 195 G Sbjct: 198 G 198 >gi|213626671|gb|AAI69844.1| LOC398207 protein [Xenopus laevis] Length = 912 Score = 142 bits (359), Expect = 7e-32, Method: Composition-based stats. Identities = 45/208 (21%), Positives = 89/208 (42%), Gaps = 11/208 (5%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 T ++++R+ E + G IPT+TVY L P A+ + Y+ K++ P+ +S Sbjct: 631 TRTSSVRQIAEIMKNGGICGIPTDTVYVLVAACNQPDAVEKAYKTKRQAQDRPMSLWISS 690 Query: 67 ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDI-----HPLSTANLKTACFRVP 120 + + PL + WP ++LV+ ++ ++ R+P Sbjct: 691 LEQLASAKHLFSPLLWDFMQKAWPSSISLVIPRGPWLEVLGAKESSKYIGTPQSIAIRIP 750 Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 C T LI+ G P+A+ SAN SG+ T+ + + + ++ ++ G S + ST Sbjct: 751 DCTVTTHLIDMVG-PIAVTSANPSGEADTTHHNQVF-AKLGDKVNGVLCDGPSPENIAST 808 Query: 180 IVNVQ--CEKKVRILRPGGLEIETLKRA 205 +V+ + R G + + + Sbjct: 809 VVDCTKIDSGNLGFFRVGIVPKSQVLQI 836 >gi|213626209|gb|AAI69842.1| Unknown (protein for MGC:196569) [Xenopus laevis] Length = 912 Score = 142 bits (359), Expect = 7e-32, Method: Composition-based stats. Identities = 45/208 (21%), Positives = 89/208 (42%), Gaps = 11/208 (5%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 T ++++R+ E + G IPT+TVY L P A+ + Y+ K++ P+ +S Sbjct: 631 TRTSSVRQIAEIMKNGGICGIPTDTVYVLVAACNQPDAVEKAYKTKRQAQDRPMSLWISS 690 Query: 67 ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDI-----HPLSTANLKTACFRVP 120 + + PL + WP ++LV+ ++ ++ R+P Sbjct: 691 LEQLASAKHLFSPLLWDFMQKAWPSSISLVIPRGPWLEVLGAKESSKYIGTPQSIAIRIP 750 Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 C T LI+ G P+A+ SAN SG+ T+ + + + ++ ++ G S + ST Sbjct: 751 DCTVTTHLIDMVG-PIAVTSANPSGEADTTHHNQVF-AKLGDKVNGVLCDGPSPENIAST 808 Query: 180 IVNVQ--CEKKVRILRPGGLEIETLKRA 205 +V+ + R G + + + Sbjct: 809 VVDCTKIDSGNLGFFRVGIVPKSQVLQI 836 >gi|56755217|gb|AAW25788.1| SJCHGC02454 protein [Schistosoma japonicum] Length = 268 Score = 142 bits (359), Expect = 8e-32, Method: Composition-based stats. Identities = 59/216 (27%), Positives = 91/216 (42%), Gaps = 36/216 (16%) Query: 2 QIMSITDSNA-LRKACEFLDAG-LPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 +I+++ D++ L + + G IA+PT+TVYGLA N +I R+ IK R P Sbjct: 20 KIITLKDASLNLNTIVQLISHGCGVIALPTDTVYGLACSVYNTESIERIRHIKGRSETKP 79 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL---STANLKTAC 116 + + +S + + L PGP+T++L PL + Sbjct: 80 MAICLDQVSHISHWCDTKNIPTGLLSDLLPGPVTVLLPRFPDKLQDPLNCHLNPGERRVG 139 Query: 117 FRVPC-GFTKKLIETY------------------GHPLAIPSANRSGQISITNVKHILSS 157 R+P GF +KLI GHPL + SAN SGQ S ++ S Sbjct: 140 IRIPDSGFIRKLISALHEQTKLSSTSGNDEYSGGGHPLVLTSANLSGQPSAIQIEE--FS 197 Query: 158 SICKEIPLIIDGGISKIGLE----------STIVNV 183 I I LI++GG + L STI+++ Sbjct: 198 EIWPSIDLIVNGGPIQPSLPSVNLDYNRSGSTIIDL 233 >gi|152967951|ref|YP_001363735.1| Sua5/YciO/YrdC/YwlC family protein [Kineococcus radiotolerans SRS30216] gi|151362468|gb|ABS05471.1| Sua5/YciO/YrdC/YwlC family protein [Kineococcus radiotolerans SRS30216] Length = 206 Score = 142 bits (359), Expect = 8e-32, Method: Composition-based stats. Identities = 34/196 (17%), Positives = 69/196 (35%), Gaps = 4/196 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ + L IA PT++ Y L + T R+ I++ + +D + Sbjct: 14 ARSIAQLAAVLREDGLIAYPTDSCYALGCRLDSHTGADRIRRIRQLGEKHHFTLVCADFA 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + +D + K P P T +L + A KT R+P F + L Sbjct: 74 QLSQFVHLDNVQFRAIKAATPNPYTFILPATKEVP-RRFAHAKKKTVGVRIPDHRFVRAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + G + + + ++D G +T+V+ Sbjct: 133 LTELGEPLLSSTLLLPGHEDPPTDGWSIKEELDHVVDAVVDAGECGTS-PTTVVDWSGGF 191 Query: 188 KVRILRPGGLEIETLK 203 ++R G + + Sbjct: 192 P-DVVRVGAGDPSRFE 206 >gi|182434095|ref|YP_001821814.1| hypothetical protein SGR_302 [Streptomyces griseus subsp. griseus NBRC 13350] gi|326774619|ref|ZP_08233884.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces cf. griseus XylebKG-1] gi|178462611|dbj|BAG17131.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326654952|gb|EGE39798.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces cf. griseus XylebKG-1] Length = 206 Score = 142 bits (358), Expect = 9e-32, Method: Composition-based stats. Identities = 37/196 (18%), Positives = 70/196 (35%), Gaps = 4/196 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + + +G +A PT++ Y L N A+ R+ I+ + D + Sbjct: 14 PRTISTVVDSIRSGALVAYPTDSCYALGCQLGNRDALGRIRSIRNLDDKHHFTLVCHDFA 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + VD K PG T +L L KT R+P T+ L Sbjct: 74 QLSQFVRVDNDVFRAVKAATPGSYTFILPATKEVP-RQLLHPKKKTVGVRIPDHVVTQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + + + + E+ +ID G L +T+++ ++ Sbjct: 133 VAELGEPLLSSTLLLPDEAEPLTQGWEIKERLEHEVDAVIDSGDCGTEL-TTVIDFSGDE 191 Query: 188 KVRILRPGGLEIETLK 203 I+R G + + Sbjct: 192 P-EIVRRGAGDTSRFE 206 >gi|323144451|ref|ZP_08079054.1| Sua5/YciO/YrdC/YwlC family protein [Succinatimonas hippei YIT 12066] gi|322415766|gb|EFY06497.1| Sua5/YciO/YrdC/YwlC family protein [Succinatimonas hippei YIT 12066] Length = 207 Score = 142 bits (358), Expect = 9e-32, Method: Composition-based stats. Identities = 40/182 (21%), Positives = 72/182 (39%), Gaps = 3/182 (1%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++KAC +++G IPT++ Y L + + A+ R+ I+K + D+S Sbjct: 15 PRFIKKACSIIESGGVGVIPTDSAYALCCNIGDKNAMERIAAIRKISKKHNFTLICRDLS 74 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 + +A V L K PG T +L L +T RVP + L Sbjct: 75 ELSTYAKVSNNVFRLLKNNTPGAYTFILPATKEVP-RRLMNEKKRTIGIRVPAGAIIEAL 133 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + PL S N ++ I + +I+DGG+ + +T++ + + Sbjct: 134 LNECSEPLLSCSLILPDHEEPENDPITINDEIGSIVDVIVDGGVLDA-MPTTVIRFEDDI 192 Query: 188 KV 189 V Sbjct: 193 PV 194 >gi|297526270|ref|YP_003668294.1| Sua5/YciO/YrdC/YwlC family protein [Staphylothermus hellenicus DSM 12710] gi|297255186|gb|ADI31395.1| Sua5/YciO/YrdC/YwlC family protein [Staphylothermus hellenicus DSM 12710] Length = 216 Score = 142 bits (358), Expect = 9e-32, Method: Composition-based stats. Identities = 52/207 (25%), Positives = 85/207 (41%), Gaps = 9/207 (4%) Query: 1 MQIMSIT----DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56 M I+ N +R+A L+ + T+T+YG+ D + ++Y KKR Sbjct: 1 MNILKANYINPSMNIVREAYRILENCGLVVGITDTLYGIFADPFRDECVSKVYVAKKRSR 60 Query: 57 MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 P+ S V D + WPGP+T+VL + Sbjct: 61 -KPIPLLASSPKAVFSITDADHFLQRFLETIWPGPITVVLKPMDNM-FSEKIHLGTGKIG 118 Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 FRVP +KL + G + SAN SG N+ + + + L ID G + IG Sbjct: 119 FRVPASPLPRKLAQLNGGFITGTSANISGLKPARNIDEAIK-QLGNNVDLYIDSGTAPIG 177 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETL 202 ST++++ EK + I+R G + ++ Sbjct: 178 EPSTVIDLTSEKPI-IVRDGAVSYRSI 203 >gi|284028679|ref|YP_003378610.1| Sua5/YciO/YrdC/YwlC family protein [Kribbella flavida DSM 17836] gi|283807972|gb|ADB29811.1| Sua5/YciO/YrdC/YwlC family protein [Kribbella flavida DSM 17836] Length = 206 Score = 142 bits (358), Expect = 9e-32, Method: Composition-based stats. Identities = 36/189 (19%), Positives = 68/189 (35%), Gaps = 4/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 A+ + + + G IA PT++ + L N I R+ I++ + D + Sbjct: 14 KRAIGQVVDLVRDGGLIAYPTDSCFALGCQLGNRDGIDRIRTIRQLDDRHHFTLVCQDFA 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + + K PG T +L L KT R+P + L Sbjct: 74 QLGQFVHISNAVFRSIKASTPGSYTFILPATKEVP-RRLLHPKKKTVGVRIPDHVVAQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + GQ + + ++ +ID G + I +T+++ + Sbjct: 133 VAELGEPLLSSTLLLPGQEEPMTQGWEIKEELDHQVDAVIDSGEAGI-EPTTVIDFSEDV 191 Query: 188 KVRILRPGG 196 I+R G Sbjct: 192 P-EIVRRGA 199 >gi|332991534|gb|AEF01589.1| putative double-stranded RNA-binding protein [Alteromonas sp. SN2] Length = 191 Score = 142 bits (358), Expect = 9e-32, Method: Composition-based stats. Identities = 44/181 (24%), Positives = 70/181 (38%), Gaps = 8/181 (4%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 G + PTE V G+ D N A+ L +K+RP +I ++ S + + Sbjct: 15 IVSAFKNGDLLVYPTEAVMGIGCDPDNEEAVLALLALKQRPIEKGVILIAANYSQLLPYI 74 Query: 75 SVDPLSLHL---AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 + + + H WPGP T +L ++T T + RV K L E Sbjct: 75 NDEAILQHRRTEIVSSWPGPNTWLLPKSASTPQ--WLTGKHEKIAVRVSNHPVVKALCEK 132 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 PL SAN +GQ + ++ I + IDG + STI + + +R Sbjct: 133 LEKPLVSTSANLTGQQPAITQQDAIN--IFGDSVFYIDGEVGGHAKPSTIRDGDTGEIIR 190 Query: 191 I 191 Sbjct: 191 S 191 >gi|302341611|ref|YP_003806140.1| Sua5/YciO/YrdC/YwlC family protein [Desulfarculus baarsii DSM 2075] gi|301638224|gb|ADK83546.1| Sua5/YciO/YrdC/YwlC family protein [Desulfarculus baarsii DSM 2075] Length = 208 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 56/185 (30%), Positives = 85/185 (45%), Gaps = 5/185 (2%) Query: 21 AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPL 79 G +A PTET+YGLAVD+ N A+ RL +K+RP P + + A++ PL Sbjct: 28 EGAVVAFPTETLYGLAVDAANHRALARLAALKERPDDKPFPLIIGAEGQIAPLAATLTPL 87 Query: 80 SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPS 139 + L WPGPLT+VL + + P T A L G + S Sbjct: 88 ARRLMAAHWPGPLTIVL--AAAPGLPPELTHQGGVALRLSSHPVAAGLALALGRAVTATS 145 Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEI 199 AN +G+ L ++ I L++DGG G STIV + ++ ++LR G + + Sbjct: 146 ANLAGRP-AQARPEALDPALLARIDLLLDGGPCPGGAPSTIV-LASGRRAKVLRQGAVAL 203 Query: 200 ETLKR 204 +R Sbjct: 204 AEEER 208 >gi|82596901|ref|XP_726453.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL] gi|23481870|gb|EAA18018.1| hypothetical protein [Plasmodium yoelii yoelii] Length = 519 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 56/181 (30%), Positives = 90/181 (49%), Gaps = 9/181 (4%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I + N + E ++ I PTETVYGL +S + ++R ++++K RP +P+I HV Sbjct: 11 IKNDNVKKMLKEHIEKNNLIGFPTETVYGLGGNSLSEISLRNIFKMKNRPISDPIISHVY 70 Query: 66 DISMVKKHASVDPLSLH-----LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 DI+ + L F PGPL+++ + + + TA+ + R+P Sbjct: 71 DIAQAFDQLYHINIYEKYIIYILTMNFSPGPLSII--AKAKKHLPLILTAHTQFCAVRIP 128 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 +K+I+ P+A PSAN+ IS TN H+ + I LI D G IG+EST Sbjct: 129 NNKIARKIIKICNTPIAAPSANKFQHISPTNSLHVYDEFKDENI-LIFDDGQCDIGIEST 187 Query: 180 I 180 + Sbjct: 188 V 188 Score = 43.5 bits (102), Expect = 0.041, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 50/126 (39%), Gaps = 25/126 (19%) Query: 222 SPGMLKSHYAPRSQVRLRAIHVNP-------------REALIRFGNVPIKNIENAIISLN 268 SPG L +HY+P L I N + + GN + N + LN Sbjct: 391 SPGTLLTHYSPVVSTYLIDIIKNKDEKSNKLLNINLNKCVFLDIGNSFFEYENNFLKYLN 450 Query: 269 LSKTG-----KLKEAAFNLFNYMKIADDS----GASSIAFSSI---PNHGLGIAINNRLE 316 +S ++K N F +++ A++ A I S + L ++I +R+ Sbjct: 451 ISYDNLEINEQIKYVTKNFFLFLRKAENLAINHQAKYIFISIVNLKSLDELTLSIFDRIF 510 Query: 317 RAAAPR 322 R+A+ + Sbjct: 511 RSASGK 516 >gi|237745676|ref|ZP_04576156.1| translation factor [Oxalobacter formigenes HOxBLS] gi|229377027|gb|EEO27118.1| translation factor [Oxalobacter formigenes HOxBLS] Length = 208 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 46/190 (24%), Positives = 83/190 (43%), Gaps = 5/190 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S ++KA + + G + +PT++ Y L + A+ R+ +I++ + L D+ Sbjct: 15 SRLIKKAADVVRGGGVVVMPTDSSYALVCRLDDKAAVDRIRQIRQMDERHLLTLLCRDLK 74 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 V +A VD + L K PG T +L LS + KT R+P + L Sbjct: 75 EVGSYARVDNSAYRLLKAATPGAFTFILQATKEVP-RRLSHPSRKTIGLRIPDNRIDQAL 133 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL + G + + + K + +IDGG + L +T++++ ++ Sbjct: 134 LEELGEPLIGTTLILPGDEDPLTEGYAIQERLEKLVDAVIDGGACGL-LPTTVIDLTGKE 192 Query: 188 K--VRILRPG 195 VR R G Sbjct: 193 PELVRSGRGG 202 >gi|254804056|ref|YP_003082277.1| putative translation factor [Neisseria meningitidis alpha14] gi|254667598|emb|CBA03357.1| putative translation factor [Neisseria meningitidis alpha14] gi|316984513|gb|EFV63479.1| ribosome maturation factor [Neisseria meningitidis H44/76] gi|325127245|gb|EGC50183.1| protein RimN [Neisseria meningitidis N1568] gi|325139460|gb|EGC62000.1| protein RimN [Neisseria meningitidis CU385] gi|325201186|gb|ADY96641.1| protein RimN [Neisseria meningitidis H44/76] Length = 200 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 45/192 (23%), Positives = 78/192 (40%), Gaps = 5/192 (2%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I ++A RK +L G +A PTE+ YGL A+ +L +KKRP + Sbjct: 12 MLFPRIIAASAQRKLSVYLKKGGLVAYPTESCYGLGCLPTLAKALGKLAHLKKRPQHKGM 71 Query: 61 ICHVSDISMVKKHASVDPLSLHLA-KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I + ++ + +L + WP P T +L + + L RV Sbjct: 72 IVIGNQFEQLQPLLQMPSENLQDMLRKEWPAPKTFLLS-AKSCVLPELRGKQRSKLAVRV 130 Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P ++L + PL S NR+G+ + + + I+ G I + S Sbjct: 131 PAHVGARRLCQALQTPLVSTSCNRAGKRACRTEREVRRQF--GRDVWIVGGRIGRQKSPS 188 Query: 179 TIVNVQCEKKVR 190 I++ + K++R Sbjct: 189 QIIDGETGKRLR 200 >gi|261856673|ref|YP_003263956.1| SUA5/yciO/yrdC domain protein [Halothiobacillus neapolitanus c2] gi|261837142|gb|ACX96909.1| SUA5/yciO/yrdC domain protein [Halothiobacillus neapolitanus c2] Length = 185 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 39/180 (21%), Positives = 71/180 (39%), Gaps = 4/180 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 LR+ + L G IA PTE V+GL D + A+ R+ +K+R LI +++ + Sbjct: 8 LRQTGQILSQGGVIAYPTEAVFGLGCDPLDAIAVERILTLKQRDWRKGLILLAANLEQLH 67 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIET 130 S+ P L WPGP T V+ ++ + T RV + + Sbjct: 68 PWISLSPEELAKISAHWPGPATWVVP--ASQNTPDWITGGRDEVAVRVTAHPVAAAIAQA 125 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 + SAN + + +V + ++ I+ G + + I + + +R Sbjct: 126 AHTAIVSTSANPAQRPPARSVLAV-RRYFDDQLDGILTGPVDTQAQPTPIRHWRTGDWLR 184 >gi|227497322|ref|ZP_03927554.1| SUA5/YciO/YrdC/YwlC [Actinomyces urogenitalis DSM 15434] gi|226833193|gb|EEH65576.1| SUA5/YciO/YrdC/YwlC [Actinomyces urogenitalis DSM 15434] Length = 242 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 55/239 (23%), Positives = 93/239 (38%), Gaps = 24/239 (10%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 + + L + G + IPT+TVYG+ + + A+ RL K R P V Sbjct: 3 DVNEDRTLSTVVAHVRDGGLVIIPTDTVYGIGTLASDAAAVARLLAAKGRGRQMPPPVLV 62 Query: 65 SDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 + + ++ P + L + FWPG LT++LD T T R+P Sbjct: 63 AGPDQLDGVVGALPPAAQALMEAFWPGALTIILDAAPDLGWDLGETGG--TIAVRMPDHP 120 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSIC----------------KEIPLII 167 + P+A+ SAN +GQ T+ + + L++ Sbjct: 121 LALELLRATGPMAVTSANHTGQPPATDAASARVAFPGRVREAGSPGAGSPDRSEGDILLL 180 Query: 168 DGGISKIGLESTIVNVQCEK--KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPG 224 DGG + + STIV++ + RI+R G L + L + L ++P + G Sbjct: 181 DGGATPGPVPSTIVSLAGDHAYSPRIIRDGVLSLSQLAVVLDPVL---TQAGASPMTAG 236 >gi|291515259|emb|CBK64469.1| Sua5/YciO/YrdC/YwlC family protein [Alistipes shahii WAL 8301] Length = 193 Score = 141 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 39/190 (20%), Positives = 85/190 (44%), Gaps = 8/190 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A + AG I PT+TV+GL D+ + A+ R+Y +K+ ++ + Sbjct: 8 QREVDEAVRTMRAGGIILYPTDTVWGLGCDATSAAAVERIYRLKRSGNKKSMLVLCASAD 67 Query: 69 MVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 M+ ++ + P ++ + +L PLT +L + + + T R+P F ++ Sbjct: 68 MIVRYVNKAPGIAFEVMELAT-SPLTAILPGAA--GLAENLIPDEGTLGVRIPDHEFCRR 124 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS--KIGLESTIVNVQ 184 ++ G P+ SAN SG+ + ++ + I + +++ S+I+ Sbjct: 125 MLRALGRPIVSTSANISGEATPVGLQDVAREIIDG-VDFVVNPRFEGKPTRKASSIIAFG 183 Query: 185 CEKKVRILRP 194 +V+I+R Sbjct: 184 EGGEVKIIRE 193 >gi|146280421|ref|YP_001170574.1| hypothetical protein PST_0024 [Pseudomonas stutzeri A1501] gi|212288217|sp|A4VFI1|RIMN_PSEU5 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|145568626|gb|ABP77732.1| conserved hypothetical protein [Pseudomonas stutzeri A1501] gi|327478637|gb|AEA81947.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166] Length = 185 Score = 141 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 38/181 (20%), Positives = 70/181 (38%), Gaps = 4/181 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++ + AG IA PTE V+G+ D + A+ RL +K+RP LI + Sbjct: 7 VQQVARVVRAGGVIAYPTEAVWGVGCDPWDEDAVLRLLALKERPVEKGLILIADTVEQFD 66 Query: 72 KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130 P WPGP T ++ + T + RV K + Sbjct: 67 FLLDDLPERWLDRLSGTWPGPNTWLVPHRG--RLPEWITGRHDSVALRVTDHPLVKRLCA 124 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 PL SAN +G+ + + + +++ + +G + S I +++ + +R Sbjct: 125 LTGPLVSTSANPAGRPAARSRLRV-EQYFPQQLDAVFNGALGGRRNPSVIRDLRSGEVIR 183 Query: 191 I 191 Sbjct: 184 P 184 >gi|327405619|ref|YP_004346457.1| translation factor SUA5 [Fluviicola taffensis DSM 16823] gi|327321127|gb|AEA45619.1| translation factor SUA5 [Fluviicola taffensis DSM 16823] Length = 205 Score = 141 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 53/199 (26%), Positives = 92/199 (46%), Gaps = 9/199 (4%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP-LICHVS 65 D+ +++ + L G I IPT+ VY +A D N + L + K S Sbjct: 10 IDNRLVQQVVDELKKGGIIIIPTDAVYAVACDVMNKKGLAELAKWKDVKLSKANFSIICS 69 Query: 66 DISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123 D+S V ++ +D + L K + PGP T +LD +T+++ L ++ K R+P Sbjct: 70 DLSEVSEYVKQLDRNTFRLLKHYLPGPFTFILD--ATSEVSKLFDSSKKEIGIRIPDNKI 127 Query: 124 TKKLIETYGHPLAIPSANRSGQISITN--VKHILSSSICKEIPLIIDGGISKIGLESTIV 181 + ++E G+P+A+ S + S + + E+ +IIDGG K+ STIV Sbjct: 128 VQAIVERLGNPMAVTSLHDSEDEIMEYFVDPASIYERYDDEVAIIIDGGPGKLD-ASTIV 186 Query: 182 NVQCEKKVRILRPGGLEIE 200 + I+R G +I+ Sbjct: 187 DCTNGN-AEIIRQGVGQID 204 >gi|309973849|gb|ADO97050.1| tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein [Haemophilus influenzae R2846] Length = 183 Score = 141 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 39/182 (21%), Positives = 73/182 (40%), Gaps = 8/182 (4%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 + E L +A PTE V+GL + ++ +A+++L ++K+RP LI + + Sbjct: 4 EQIAEALRQNQVVAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRP 63 Query: 73 HAS---VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLI 128 ++ L + + P T ++ STT T + R K L Sbjct: 64 FVDFELINDEQLSRLQGKYERPTTWIVPAKSTT--PHFLTGKFDSIAIRLCDHPSVKALC 121 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E G L SAN +G+ + S + P ++D + + S I +++ + Sbjct: 122 EITGFALTSTSANLTGEPPCRTADEV-RSQFGADFP-VLDEMVGRAHNPSEIRDLRTNQL 179 Query: 189 VR 190 R Sbjct: 180 FR 181 >gi|145633852|ref|ZP_01789574.1| trigger factor [Haemophilus influenzae 3655] gi|144985294|gb|EDJ92133.1| trigger factor [Haemophilus influenzae 3655] Length = 183 Score = 141 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 39/182 (21%), Positives = 73/182 (40%), Gaps = 8/182 (4%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 + E L +A PTE V+GL + ++ +A+++L ++K+RP LI + + Sbjct: 4 EQIAEALRQNQVVAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRP 63 Query: 73 HA---SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLI 128 ++ L + + P T ++ STT T + R K L Sbjct: 64 FVNFEQINDEQLSRLQGKYERPTTWIVPAKSTT--PHFLTGKFDSIAIRLCDHPSVKALC 121 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E G L SAN +G+ + S + P ++D + + S I +++ + Sbjct: 122 ELTGFALTSTSANLTGEPPCRTADEV-RSQFGADFP-VLDEMVGRAHNPSEIRDLRTNQL 179 Query: 189 VR 190 R Sbjct: 180 FR 181 >gi|121635793|ref|YP_976038.1| hypothetical protein NMC2128 [Neisseria meningitidis FAM18] gi|218767259|ref|YP_002341771.1| hypothetical protein NMA0237 [Neisseria meningitidis Z2491] gi|120867499|emb|CAM11276.1| hypothetical protein NMC2128 [Neisseria meningitidis FAM18] gi|121051267|emb|CAM07543.1| hypothetical protein NMA0237 [Neisseria meningitidis Z2491] gi|254671287|emb|CBA08623.1| conserved hypothetical protein [Neisseria meningitidis alpha153] gi|254672629|emb|CBA06396.1| conserved hypothetical protein [Neisseria meningitidis alpha275] gi|319411465|emb|CBY91881.1| putative RNA-binding protein [Neisseria meningitidis WUE 2594] gi|325131234|gb|EGC53946.1| protein RimN [Neisseria meningitidis M6190] gi|325133318|gb|EGC55984.1| protein RimN [Neisseria meningitidis M13399] gi|325137408|gb|EGC59996.1| protein RimN [Neisseria meningitidis ES14902] gi|325143385|gb|EGC65714.1| protein RimN [Neisseria meningitidis 961-5945] gi|325143552|gb|EGC65873.1| protein RimN [Neisseria meningitidis M01-240013] gi|325199224|gb|ADY94680.1| protein RimN [Neisseria meningitidis G2136] Length = 200 Score = 141 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 45/192 (23%), Positives = 78/192 (40%), Gaps = 5/192 (2%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I ++A RK +L G +A PTE+ YGL A+ +L +KKRP + Sbjct: 12 MLFPRIIAASAQRKLSVYLKKGGLVAYPTESCYGLGCLPTLAKALGKLAHLKKRPQHKGM 71 Query: 61 ICHVSDISMVKKHASVDPLSLHLA-KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I + ++ + +L + WP P T +L + + L RV Sbjct: 72 IVIGNQFEQLQPLLQMPSENLQDMLRKEWPAPKTFLLS-AKSCVLPELRGKQRSKLAVRV 130 Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P ++L + PL S NR+G+ + + + I+ G I + S Sbjct: 131 PAHVGARRLCQALQTPLVSTSCNRAGKRACRTEREVRRQF--GRDVWIVGGRIGRQKSPS 188 Query: 179 TIVNVQCEKKVR 190 I++ + K++R Sbjct: 189 QIIDGETGKRLR 200 >gi|308480641|ref|XP_003102527.1| hypothetical protein CRE_04025 [Caenorhabditis remanei] gi|308261259|gb|EFP05212.1| hypothetical protein CRE_04025 [Caenorhabditis remanei] Length = 215 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 65/211 (30%), Positives = 101/211 (47%), Gaps = 16/211 (7%) Query: 2 QIMSITD---SNALRKACEFLDAGLPIAIPTETVYGLAV-DSRNPTAIRRLYEIKKRPAM 57 +I+ +T A+ A G +A+PT+T+YG++ + RLY +K+RP Sbjct: 5 RILRLTADNMEEAIDTAVSVFLRGGIVALPTDTLYGISTLLPFS----DRLYALKQRPFE 60 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 PL + + + K S +S LA PGP+TL+ + L ++ + Sbjct: 61 KPLGIFLPSPTSM-KLVSKQTISDELANCLLPGPVTLMFERLP--NLPDEFNPGVVNVAC 117 Query: 118 RVP-CGFTKKLIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGG-ISKI 174 RVP C ++ G PLA SAN SG + T++ H ++ I LI+D G I Sbjct: 118 RVPDCAIVSRICRKLGQPLAQTSANVSGSPLNPTSIDH--FKNLHSNIDLILDNGQIVSS 175 Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRA 205 G STIV++ E RI+R G E ET+K+ Sbjct: 176 GEGSTIVDLTVESCFRIVRSGCAESETIKKL 206 >gi|168035903|ref|XP_001770448.1| predicted protein [Physcomitrella patens subsp. patens] gi|162678325|gb|EDQ64785.1| predicted protein [Physcomitrella patens subsp. patens] Length = 291 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 54/219 (24%), Positives = 86/219 (39%), Gaps = 24/219 (10%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 S +D L E + +G IPT+TVY + D +N AI RLY IK M PL Sbjct: 52 SGSDVWRLDPLVELIKSGAVGIIPTDTVYAIVCDLKNRQAIDRLYRIKNMDPMKPLSILC 111 Query: 65 SDISMVKKHASVDPL--------SLHLAKLFWPGPLTLVLDLLSTTD--------IHPLS 108 + K+ P A+ PGP T +L +S Sbjct: 112 RSFQDIDKYTLGFPRGNSHGQTNVFRAARQSLPGPYTFILPASKEMPKQCTTFGGSSAVS 171 Query: 109 TANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSIC-----KE 162 A K+ R+P +L++ PL S + + I++ + + Sbjct: 172 CAPRKSVGVRMPDDVICAELLKRLDEPLLCTSVRQRSEDEWMLDPVIIADTYGASEGREG 231 Query: 163 IPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIET 201 + +IDGG ++ ST++++ EK + ILR G +E Sbjct: 232 VDFVIDGG-ERLAYPSTVIDMTGEKPI-ILRRGKGPVEE 268 >gi|71276454|ref|ZP_00652730.1| SUA5/yciO/yrdC, N-terminal [Xylella fastidiosa Dixon] gi|71901273|ref|ZP_00683372.1| SUA5/yciO/yrdC, N-terminal [Xylella fastidiosa Ann-1] gi|170731006|ref|YP_001776439.1| hypothetical protein Xfasm12_1935 [Xylella fastidiosa M12] gi|71162770|gb|EAO12496.1| SUA5/yciO/yrdC, N-terminal [Xylella fastidiosa Dixon] gi|71728964|gb|EAO31096.1| SUA5/yciO/yrdC, N-terminal [Xylella fastidiosa Ann-1] gi|167965799|gb|ACA12809.1| conserved hypothetical protein [Xylella fastidiosa M12] Length = 209 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 51/184 (27%), Positives = 81/184 (44%), Gaps = 7/184 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +A L G IA PTE V+GL D R TA+ L IK+R + LI ++++ ++ Sbjct: 29 LSEAVTALQQGGVIAYPTEAVWGLGCDPRQETAVHTLLNIKQRASGKGLILVTAELNTLQ 88 Query: 72 KHASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 +D P LH + WPGP T VL ++T T + R+ L Sbjct: 89 DWLDLDTLSPERLHEVQASWPGPHTWVLP--ASTRAPHWITGHHNGLAVRISAHPLVSAL 146 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + L SAN +GQ S + L S+ + I+DG + ++I + + Sbjct: 147 CRAWNMALISTSANVAGQ-SPARRREDLDPSLLPHLAGIVDGPTGGLAQPTSIRDARSGH 205 Query: 188 KVRI 191 +R+ Sbjct: 206 ILRL 209 >gi|308390230|gb|ADO32550.1| hypothetical protein NMBB_2449 [Neisseria meningitidis alpha710] gi|325129260|gb|EGC52099.1| protein RimN [Neisseria meningitidis OX99.30304] gi|325135372|gb|EGC57993.1| YrdC domain, putative [Neisseria meningitidis M0579] gi|325203123|gb|ADY98577.1| protein RimN [Neisseria meningitidis M01-240149] gi|325207044|gb|ADZ02497.1| protein RimN [Neisseria meningitidis M04-240196] gi|325208992|gb|ADZ04444.1| protein RimN [Neisseria meningitidis NZ-05/33] Length = 200 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 45/192 (23%), Positives = 78/192 (40%), Gaps = 5/192 (2%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I ++A RK +L G +A PTE+ YGL A+ +L +KKRP + Sbjct: 12 MLFPRIIAASAQRKLSVYLKKGGLVAYPTESCYGLGCLPTLAKALGKLAHLKKRPQHKGM 71 Query: 61 ICHVSDISMVKKHASVDPLSLHLA-KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I + ++ + +L + WP P T +L + + L RV Sbjct: 72 IVIGNQFEQLQPLLQMPSENLQDMLRKEWPAPKTFLLS-AKSCVLPELRGKQRSKLAVRV 130 Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P ++L + PL S NR+G+ + + + I+ G I + S Sbjct: 131 PAHVGARRLCQALQTPLVSTSCNRAGKRACRTEREVRRQF--GRDVWIVGGRIGRQKSPS 188 Query: 179 TIVNVQCEKKVR 190 I++ + K++R Sbjct: 189 QIIDGETGKRLR 200 >gi|109896360|ref|YP_659615.1| SUA5/yciO/yrdC-like [Pseudoalteromonas atlantica T6c] gi|123065188|sp|Q15ZX7|RIMN_PSEA6 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|109698641|gb|ABG38561.1| translation factor SUA5 [Pseudoalteromonas atlantica T6c] Length = 187 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 45/175 (25%), Positives = 71/175 (40%), Gaps = 8/175 (4%) Query: 21 AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80 AG A PTE V+GL D N A+ +L +K+R LI + S + + + Sbjct: 16 AGKVFAYPTEAVFGLGCDPDNEQAVNKLLALKQRDVSKGLILVGDNYSQLLPYVDDSAIK 75 Query: 81 L-HLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136 + ++F WPGP+T +L T T + RV K L + PL Sbjct: 76 MTKRTEIFSSWPGPITWLLPKSKTA--PSWVTGESEFIAVRVSAHPLIKDLCQRANKPLV 133 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 SAN +G + + +S ++ LI DG + S I + + +R Sbjct: 134 STSANTAGHPPALSADEV-TSYFSNQVILI-DGSLGGSRSPSKIRHGHSGQTIRD 186 >gi|68063631|ref|XP_673811.1| hypothetical protein [Plasmodium berghei strain ANKA] gi|56491931|emb|CAI02427.1| hypothetical protein PB300739.00.0 [Plasmodium berghei] Length = 496 Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 54/181 (29%), Positives = 92/181 (50%), Gaps = 9/181 (4%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I + N + E + I PTETVYGL +S + +++ ++++K RP +P+I HV Sbjct: 11 IKNDNVKKMLKEHIKKNNLIGFPTETVYGLGGNSLSEISLKNIFKMKNRPISDPIISHVY 70 Query: 66 DISMV-KKHASVDPLSLHLA----KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 DI+ + ++ ++ F PGPL+++ + + + TA+ + R+P Sbjct: 71 DIAQAFDQLYHINMYEKYIIYILNMKFSPGPLSII--AKAKEHLPLILTAHTQFCAVRIP 128 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 K++I+ P+A PSAN+ IS TN H+ + I LI D G IG+EST Sbjct: 129 NNKIAKEIIKICDTPIAAPSANKFQHISPTNSLHVYEEFKDENI-LIFDDGQCDIGIEST 187 Query: 180 I 180 + Sbjct: 188 V 188 >gi|171059265|ref|YP_001791614.1| Sua5/YciO/YrdC/YwlC family protein [Leptothrix cholodnii SP-6] gi|170776710|gb|ACB34849.1| Sua5/YciO/YrdC/YwlC family protein [Leptothrix cholodnii SP-6] Length = 208 Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 43/176 (24%), Positives = 75/176 (42%), Gaps = 4/176 (2%) Query: 28 PTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLF 87 PT++ Y L + A L I+ + L D+S + +A VD L K Sbjct: 33 PTDSSYALVCQLDDKAAADALRRIRGVDDKHHLTLLCRDLSELSSYARVDNRQYRLLKSA 92 Query: 88 WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQI 146 PGP T +L+ LS + +T RVP T+ L++ +G PL + G+I Sbjct: 93 TPGPYTFILEATKEVP-RRLSHPSRRTIGLRVPDHRVTQDLLDLFGQPLLGTTLIPPGEI 151 Query: 147 SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202 N + + + +I+D G +T+V++ V ++R G ++ T+ Sbjct: 152 HPLNDCAEIRERFERLVQVIVDAGPCPA-EPTTVVDLSSGDPV-LVRAGRGDLATV 205 >gi|33519687|ref|NP_878519.1| hypothetical protein Bfl220 [Candidatus Blochmannia floridanus] gi|81666637|sp|Q7VQB9|RIMN_BLOFL RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|33517350|emb|CAD83735.1| putative translation factor (SUA5) [Candidatus Blochmannia floridanus] Length = 189 Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 53/178 (29%), Positives = 83/178 (46%), Gaps = 8/178 (4%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 E L+ G I PTE+V+GL + N AI L +IK R LI ++ + + K+ Sbjct: 15 EQLNKGKVIVYPTESVFGLGCNPDNENAINTLLKIKCRSWKKGLILVAANYTQLFKYVDD 74 Query: 77 DPL-SLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYG 132 L SL L+++F WPGP T V S+T + T + RV ++L T+G Sbjct: 75 RYLNSLQLSRIFSTWPGPFTWVFPARSSTPM--WLTGKFSSVAIRVSNFEPIRRLCLTFG 132 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 PL SAN SG + + H + + + P I++ + + S I + K +R Sbjct: 133 KPLVSTSANVSGYLPARTI-HAVYKQLGYDFP-IMNTNVLGLPNPSIIRDAITGKIIR 188 >gi|114321780|ref|YP_743463.1| SUA5/yciO/yrdC-like protein [Alkalilimnicola ehrlichii MLHE-1] gi|122310777|sp|Q0A5B4|RIMN_ALHEH RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|114228174|gb|ABI57973.1| translation factor SUA5 [Alkalilimnicola ehrlichii MLHE-1] Length = 190 Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 48/184 (26%), Positives = 73/184 (39%), Gaps = 8/184 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +R+ L AG +A PTE VYGL D +P A+ L +K+R LI S +S + Sbjct: 11 IRQCAARLQAGGVVAYPTEAVYGLGCDPGDPAAVATLLTLKRRDPGKGLILIASRVSQLS 70 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 PL + WPGP T +L T T RV L E Sbjct: 71 PWLGDAPLPQAVL-ASWPGPNTWLLPAAPHTPA--WITGGRAKVAVRVTAHPVAAALCEA 127 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSIC---KEIPLIIDGGISKIGLESTIVNVQCEK 187 +G + SANR GQ + + + + E+ I+ G + + + I + + Sbjct: 128 FGGAIVSTSANRDGQPPARSATQV-RTRLGAEAAELADILPGPVDRSARPTAIRDAESGA 186 Query: 188 KVRI 191 +R Sbjct: 187 VIRA 190 >gi|21672740|ref|NP_660807.1| hypothetical protein BUsg475 [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25091574|sp|Q8K977|RIMN_BUCAP RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|21623386|gb|AAM68018.1| hypothetical 20.8 kDa protein [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 190 Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 51/187 (27%), Positives = 81/187 (43%), Gaps = 8/187 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 ++L K L IA PTE ++GL D + A++RL ++KKR LI S+ + Sbjct: 8 SSLIKCIRKLYDKKIIAYPTEAMFGLGCDPTSEKAVKRLLDLKKRSIKKGLILVASNYNQ 67 Query: 70 VKKHASVDPLSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TK 125 +K + + LS K WPGP T ++ + + + T T R+ F Sbjct: 68 IKMYINESKLSAQQKKTMFFHWPGPYTFLVP--ANSLVPCWLTGQFDTIAVRISAHFSII 125 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 KL +G L SAN S + +L K+ P ++ G I S I+N+ Sbjct: 126 KLCNVFGKALVSTSANISNMSPCLTREDVLKD-FGKDFP-VLYGHIGNESHPSKIINIVN 183 Query: 186 EKKVRIL 192 K +R + Sbjct: 184 GKLIRYV 190 >gi|70945247|ref|XP_742464.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56521462|emb|CAH84674.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi] Length = 543 Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 52/181 (28%), Positives = 92/181 (50%), Gaps = 9/181 (4%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I + + + E + I PTETVYGL +S + +++ ++++K RP +P+I HV Sbjct: 11 IKNDDVKKMLKEHIKKNNLIGFPTETVYGLGGNSLSEISLKNIFKMKNRPVSDPIISHVY 70 Query: 66 DISMV-KKHASVDPLSLHLA----KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 DI+ + ++ ++ F PGPL+++ + + + TA+ + R+P Sbjct: 71 DIAQAFDQLYHINMYEKYIIYILNSNFSPGPLSVI--AKAKEYLPLILTAHTQFCAVRIP 128 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 +++I+ P+A PSAN+ IS TN H+ + I LI D G IG+EST Sbjct: 129 NNKIAREIIKICNIPIAAPSANKFQHISPTNSLHVYEEFKDENI-LIFDDGQCDIGIEST 187 Query: 180 I 180 + Sbjct: 188 V 188 Score = 42.0 bits (98), Expect = 0.13, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 50/130 (38%), Gaps = 29/130 (22%) Query: 222 SPGMLKSHYAPRSQVRLRAIHVNP-----------------REALIRFGNVPIKNIENAI 264 SPG L +HY+P L I N + + GN + N + Sbjct: 397 SPGTLLTHYSPVVSTYLIDIIKNKDEISNSYNSKLLNIDLNKCVFLDIGNSFFEYENNFL 456 Query: 265 ISLNLS-----KTGKLKEAAFNLFNYMKIADDS----GASSIAFSSI---PNHGLGIAIN 312 LN+S ++K N F +++ A++ A I S + L ++I Sbjct: 457 KYLNISYDNLEVNEQIKYVTKNFFLFLRKAENLAINHQAEYIFISIVNLKSLDELTLSIF 516 Query: 313 NRLERAAAPR 322 +R+ R+A+ + Sbjct: 517 DRIFRSASGK 526 >gi|188996882|ref|YP_001931133.1| Sua5/YciO/YrdC/YwlC family protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188931949|gb|ACD66579.1| Sua5/YciO/YrdC/YwlC family protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 195 Score = 140 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 51/199 (25%), Positives = 91/199 (45%), Gaps = 7/199 (3%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 M+I S L A + + G + T+T+YG+ ++ + A+ ++Y IK+R P I Sbjct: 1 MNINISTKLDDAIDVIKHGGIVITKTDTIYGILANALDKEAVEKVYLIKEREKDKPFIIL 60 Query: 64 VSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 + + +KK +P + + L +T++ D+ + KT FR+P Sbjct: 61 IPNTKFLKKIKVKENPQAEKILNL---KGITVIFDVNDPNNELEYLHRGTKTLAFRIPDD 117 Query: 123 F-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 + P+ PSAN SG ++ + ++ L ID G S+ + STIV Sbjct: 118 PEFLSFLNKLDTPIVAPSANPSGLKPAEDINKAI-EYFKDKVDLYIDRGKSETNIPSTIV 176 Query: 182 NVQCEKKVRILRPGGLEIE 200 V+ K ++ILR G +I+ Sbjct: 177 KVENSK-IKILRQGSKQID 194 >gi|320006906|gb|ADW01756.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces flavogriseus ATCC 33331] Length = 206 Score = 140 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 69/193 (35%), Gaps = 4/193 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + E + +G +A PT++ Y L + I R+ I+ + + + + Sbjct: 17 ITNVAESIRSGALVAYPTDSCYALGCQLGSRDGIDRIRSIRNLDDRHHFTLVCQNFAQLG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 + VD K PG T +L L KT R+P T+ L+ Sbjct: 77 QFVQVDNDVFRAIKAATPGSYTFILPATKEVP-RQLLHPKKKTVGVRIPDHVVTQALLTE 135 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G PL + + + + + +++D G +T+++ ++ Sbjct: 136 LGEPLLSSTLLLPDEEEPLTQGWEIKERLEHVVDVVLDSGDCGT-EPTTVIDFSG-GELE 193 Query: 191 ILRPGGLEIETLK 203 ++R G ++ + Sbjct: 194 VVRRGAGDVSRFE 206 >gi|68074035|ref|XP_678932.1| hypothetical protein [Plasmodium berghei strain ANKA] gi|56499550|emb|CAH97465.1| conserved hypothetical protein [Plasmodium berghei] Length = 522 Score = 140 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 55/180 (30%), Positives = 89/180 (49%), Gaps = 8/180 (4%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I + N + E + I PTETVYGL +S + +++ ++++K RP +P+I HV Sbjct: 11 IKNDNVKKMLKEHIKKNNLIGFPTETVYGLGGNSLSEISLKNIFKMKNRPISDPIISHVY 70 Query: 66 DISMVKKHASVDPLSLH----LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 DI+ + L F PGPL+++ + + + TA+ + R+P Sbjct: 71 DIAQAFDQLYHINMYEKYIYILNMKFSPGPLSII--AKAKEHLPLILTAHTQFCAVRIPN 128 Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 K++I+ P+A PSAN+ IS TN H+ + I LI D G IG+EST+ Sbjct: 129 NKIAKEIIKICDTPIAAPSANKFQHISPTNSLHVYEEFKDENI-LIFDDGQCDIGIESTV 187 Score = 44.3 bits (104), Expect = 0.027, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 52/130 (40%), Gaps = 29/130 (22%) Query: 222 SPGMLKSHYAPRSQVRLRAIHVNP-----------------REALIRFGNVPIKNIENAI 264 SPG L +HY+P L I N + + GN + N + Sbjct: 376 SPGTLLTHYSPVVSTYLIDIIKNKDEKSNKYSSKLLNINLNKCIFLDIGNSFFEYENNFL 435 Query: 265 ISLNLS-----KTGKLKEAAFNLFNYMKIADDS----GASSIAFSSI---PNHGLGIAIN 312 LN+S ++K N F +++ A++ A I S + P + L ++I Sbjct: 436 KYLNISYDNLEVNEQIKYVTKNFFLFLRKAENLAINHQAKYIFISIVNLKPLNELTLSIF 495 Query: 313 NRLERAAAPR 322 +R+ R+A+ + Sbjct: 496 DRIFRSASGK 505 >gi|262199867|ref|YP_003271076.1| Sua5/YciO/YrdC/YwlC family protein [Haliangium ochraceum DSM 14365] gi|262083214|gb|ACY19183.1| Sua5/YciO/YrdC/YwlC family protein [Haliangium ochraceum DSM 14365] Length = 208 Score = 140 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 44/197 (22%), Positives = 79/197 (40%), Gaps = 6/197 (3%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 +++A + L G A PT++ Y L A R+Y+ K + + DI Sbjct: 13 PPRKIQQAVDILHRGGVAAYPTDSCYALGCAIEAKQAALRIYQAKSMSQNHRMALICPDI 72 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRV-PCGFTK 125 + ++ L+ LAK +PGP TLVL +T ++ L +TA R+ + Sbjct: 73 ASASEYVHFSQLAYKLAKRIFPGPYTLVLP--ATREVPKLVIDKKQRTAGIRITSNPVAQ 130 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 L+ G PL +A + + + +++D S +T+V V Sbjct: 131 ALVNALGRPLLTSTAILPDEDGACIDADETIDAFGHILDVVVDSE-SPGDEPTTVVEVAG 189 Query: 186 EKKVRILRPGGLEIETL 202 V +LR G ++ + Sbjct: 190 ND-VNVLREGVGPLDGI 205 >gi|296313775|ref|ZP_06863716.1| protein RimN [Neisseria polysaccharea ATCC 43768] gi|296839703|gb|EFH23641.1| protein RimN [Neisseria polysaccharea ATCC 43768] Length = 200 Score = 140 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 45/192 (23%), Positives = 79/192 (41%), Gaps = 5/192 (2%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I ++A RK +L G +A PTE+ YGL A+ +L +KKRP + Sbjct: 12 MLFPRIIAASAQRKLSVYLKKGGLVAYPTESCYGLGCLPTLAKALGKLAHLKKRPQHKGM 71 Query: 61 ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I + ++ + +L + + WP P T +L + + L RV Sbjct: 72 IVIGNQFEQLQPLLQMPSENLQAMLRKEWPAPKTFLLS-AKSCVLPELRGKQRSKLAVRV 130 Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P ++L + PL S NR+G+ + + + I+ G I + S Sbjct: 131 PAHVGARRLCQALQTPLVSTSCNRAGKRACRTEREVRRQF--GRDVWIVGGRIGRQKSPS 188 Query: 179 TIVNVQCEKKVR 190 I++ + K++R Sbjct: 189 QIIDGETGKRLR 200 >gi|332300598|ref|YP_004442519.1| Sua5/YciO/YrdC/YwlC family protein [Porphyromonas asaccharolytica DSM 20707] gi|332177661|gb|AEE13351.1| Sua5/YciO/YrdC/YwlC family protein [Porphyromonas asaccharolytica DSM 20707] Length = 195 Score = 140 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 43/187 (22%), Positives = 81/187 (43%), Gaps = 6/187 (3%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +A R+A + L G I PT+T++GL D+ N A+ RL +K RP P++ V Sbjct: 12 SAAREAVDVLQRGGIILYPTDTIWGLGCDATNEEAVDRLSALKGRPTGKPMLMLVDSDVR 71 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 ++ + P PLT++ ++ P A+ + R+ +++ Sbjct: 72 IQSYVRTVPSMAFQLIDVAVRPLTIIYP--EGRNVAPQLLADDGSIGIRIASDTLCQEIC 129 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--GLESTIVNVQCE 186 PL SAN +G S N + ++ K + ++ + G+ S I+ + Sbjct: 130 RMLRRPLVSTSANLAGTSSPHNYSE-IDPALIKMVDYVVPLRQDEHIDGMPSDIIKLGIN 188 Query: 187 KKVRILR 193 +VR++R Sbjct: 189 NEVRVIR 195 >gi|324522067|gb|ADY47983.1| YrdC domain-containing protein [Ascaris suum] Length = 208 Score = 140 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 101/207 (48%), Gaps = 20/207 (9%) Query: 2 QIMSITDSN---ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58 +I+ +TDS AL +A L++G IA+PT+T+YGL+ N +L+++K R M Sbjct: 3 KIIRLTDSTFEVALSRAVAVLESGGVIALPTDTIYGLSTTLGNAD---KLFKLKFRSRMK 59 Query: 59 PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 P +SD++ + K A + + +H + PGP+TLV + ++ + +T R Sbjct: 60 PFALFLSDVTEISKWA-IPTIGIHTMRRLLPGPVTLVFNR--SSRLPAEFNEGHRTIGIR 116 Query: 119 VPCG-FTKKLIETYG-HPLAIPSANRSG-QISITNVKHILSSSICKEIPLIIDGGI--SK 173 +P F L + G PLA SAN SG + +V+ + + LIIDG + Sbjct: 117 IPDHSFVHALSKRLGDTPLAQTSANLSGAAENPVSVED--FEDLWPGVDLIIDGDVLKDP 174 Query: 174 IGL----ESTIVNVQCEKKVRILRPGG 196 G ST+VN+ I+R G Sbjct: 175 TGKVSRRGSTVVNLCIPGTYSIIRDGC 201 >gi|297183543|gb|ADI19672.1| putative translation factor (sua5) [uncultured Alteromonadales bacterium HF4000_16C08] Length = 191 Score = 140 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 44/180 (24%), Positives = 74/180 (41%), Gaps = 8/180 (4%) Query: 16 CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75 + G+ + PTE V G+ D + +A+ L EIK+RP +I ++ S + + + Sbjct: 16 VAAFENGMLLVYPTEAVMGIGCDPDSESAVLALLEIKQRPIEKGVILVAANYSQLLPYVN 75 Query: 76 VD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETY 131 + P WPGP T +L +T T RV + + ET Sbjct: 76 DNAIRPDMRTEIFSSWPGPNTWLLP--KSTSAPMWLTGKHDKIAVRVSNHPTVRAMCETL 133 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 G P+ SAN +GQ + +I + L ++G + K STI + + +R Sbjct: 134 GKPVVSTSANLTGQPPARTLDEA--KTIFADSVLYVEGSVGKSSKPSTIRDGETGDIIRA 191 >gi|227875435|ref|ZP_03993576.1| RNA binding protein [Mobiluncus mulieris ATCC 35243] gi|269977313|ref|ZP_06184286.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus mulieris 28-1] gi|306818746|ref|ZP_07452468.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus mulieris ATCC 35239] gi|307700961|ref|ZP_07637986.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus mulieris FB024-16] gi|227843989|gb|EEJ54157.1| RNA binding protein [Mobiluncus mulieris ATCC 35243] gi|269934616|gb|EEZ91177.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus mulieris 28-1] gi|304648432|gb|EFM45735.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus mulieris ATCC 35239] gi|307613956|gb|EFN93200.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus mulieris FB024-16] Length = 207 Score = 140 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 37/195 (18%), Positives = 75/195 (38%), Gaps = 4/195 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + L + E + G +A PT++ Y L N + R+ +I++ + D S Sbjct: 15 ARLLNQIVEIIREGGIMAYPTDSGYALGCALANAEGLERIRKIRRLDDKHHFTLVCHDFS 74 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + + + L K PG T +L L+ + R+P + L Sbjct: 75 QLGQLVMISNANFRLIKSLTPGSYTFILKGTKEVPRATLNKKKH-SVGVRIPNHKVARSL 133 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G + + G+ N + + + +I+D I +T++N++ + Sbjct: 134 VEALGEAILSCTLILPGESEPLNNATDVVEKLGHVLDVIVDAPIGNP-QATTVINMEDGQ 192 Query: 188 KVRILRPGGLEIETL 202 V + R G I+ L Sbjct: 193 PV-VTREGAGSIDFL 206 >gi|15677963|ref|NP_275135.1| hypothetical protein NMB2150 [Neisseria meningitidis MC58] gi|161871012|ref|YP_001600192.1| hypothetical protein NMCC_2108 [Neisseria meningitidis 053442] gi|81784069|sp|Q9JXA4|RIMN_NEIMB RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|212288211|sp|A9M4K6|RIMN_NEIM0 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|212288268|sp|A1KWL6|RIMN_NEIMF RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|212288269|sp|A1IP83|RIMN_NEIMA RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|7227408|gb|AAF42458.1| conserved hypothetical protein [Neisseria meningitidis MC58] gi|161596565|gb|ABX74225.1| putative translation factor [Neisseria meningitidis 053442] gi|261393462|emb|CAX51108.1| putative RNA-binding protein [Neisseria meningitidis 8013] Length = 189 Score = 140 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 45/192 (23%), Positives = 78/192 (40%), Gaps = 5/192 (2%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I ++A RK +L G +A PTE+ YGL A+ +L +KKRP + Sbjct: 1 MLFPRIIAASAQRKLSVYLKKGGLVAYPTESCYGLGCLPTLAKALGKLAHLKKRPQHKGM 60 Query: 61 ICHVSDISMVKKHASVDPLSLHLA-KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I + ++ + +L + WP P T +L + + L RV Sbjct: 61 IVIGNQFEQLQPLLQMPSENLQDMLRKEWPAPKTFLLS-AKSCVLPELRGKQRSKLAVRV 119 Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P ++L + PL S NR+G+ + + + I+ G I + S Sbjct: 120 PAHVGARRLCQALQTPLVSTSCNRAGKRACRTEREVRRQF--GRDVWIVGGRIGRQKSPS 177 Query: 179 TIVNVQCEKKVR 190 I++ + K++R Sbjct: 178 QIIDGETGKRLR 189 >gi|119962387|ref|YP_947794.1| Sua5/YciO/YrdC/YwlC family protein [Arthrobacter aurescens TC1] gi|119949246|gb|ABM08157.1| putative Sua5/YciO/YrdC/YwlC family protein [Arthrobacter aurescens TC1] Length = 206 Score = 140 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 35/196 (17%), Positives = 68/196 (34%), Gaps = 4/196 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 A+ + L G IA PT++ Y L N A+ R+ I++ + D + Sbjct: 14 PRAIGQVVNMLQGGGLIAYPTDSCYALGAQIGNREALDRIRTIRQLDDKHHFTLVCKDFA 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + +D K PG T +L L KT R+P + L Sbjct: 74 QMGQFVMLDNDIFRSIKAVTPGSYTFILPATKEVP-KRLLHPKKKTVGVRIPDHRVVQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + + + + ++ +ID G + +T+++ Sbjct: 133 LAELGEPLLSSTLLLPDEEEPLTQGWEIKERLDNQVDGVIDAGDTGS-EPTTVIDFSS-G 190 Query: 188 KVRILRPGGLEIETLK 203 ++R G + + Sbjct: 191 VAEVVRYGTGDPSRFE 206 >gi|220904022|ref|YP_002479334.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868321|gb|ACL48656.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 223 Score = 140 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 55/213 (25%), Positives = 95/213 (44%), Gaps = 20/213 (9%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 L++A L G + PTET YGL + + A+ R+Y+ K+RP PL + Sbjct: 8 RDLQEAVACLRGGHALIFPTETFYGLGCLASDAAAVSRIYQFKRRPVHKPLPLLAASEGQ 67 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGFTKKLI 128 V+ A ++ + L + FWPGPLT++L ++ A RV P L Sbjct: 68 VRSVAQLEAMPEPL-RAFWPGPLTVLLPARQGLPSQLVNEAGQ--VAVRVTPHPVAAALA 124 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSIC-----KEIPLII-DGGISKIGLESTIVN 182 + G PL SAN +G+ + V + + + P ++ +G + G+ S++V Sbjct: 125 QGAGGPLTASSANLNGRSPVCAVADLDPQLLAALQDLGQCPCVVAEGPQPQGGVPSSLVE 184 Query: 183 VQCE----------KKVRILRPGGLEIETLKRA 205 + E +++RI+R G + L+ A Sbjct: 185 LLPEQGERRAGASCRRLRIIRSGAVSRAALEAA 217 >gi|212212644|ref|YP_002303580.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii CbuG_Q212] gi|212011054|gb|ACJ18435.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii CbuG_Q212] Length = 204 Score = 140 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 44/207 (21%), Positives = 80/207 (38%), Gaps = 8/207 (3%) Query: 1 MQIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56 M + I N +++A E + G +A T++ Y L N + R+ +++ Sbjct: 1 MATIHIHPDNPQARLIKQAVETVKTGGILAYSTDSGYALGCGLGNKSGAERIRRLRQLNK 60 Query: 57 MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 +P D+S + +A + K PGP T +L L KT Sbjct: 61 AHPFTLLCRDLSEIAVYARIANPVFRFLKAHTPGPYTFILSATQAVP-RQLQHPKRKTIG 119 Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 RVP + ++E PL + G+ + + ++ LI+D G+ G Sbjct: 120 IRVPDHRVIQAILEQLQEPLMNVTLIFPGEQWAPSEISEREDELAAQVDLIVDSGVC--G 177 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETL 202 +E T + + + ILR G +I + Sbjct: 178 VEPTTLIDLVDGEPTILREGKGDISEI 204 >gi|53803092|ref|YP_115232.1| Sua5/YciO/YrdC/YwlC family protein [Methylococcus capsulatus str. Bath] gi|81680872|sp|Q603G8|RIMN_METCA RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|53756853|gb|AAU91144.1| Sua5/YciO/YrdC/YwlC family protein [Methylococcus capsulatus str. Bath] Length = 186 Score = 140 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 43/181 (23%), Positives = 69/181 (38%), Gaps = 5/181 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 LR A L G +A PTE VYGL D N A+R+L +K+R + LI +D+ V+ Sbjct: 9 LRLAANALRNGRIVAYPTEAVYGLGCDPFNEDAVRKLLALKRRSQIKGLILIAADVEAVE 68 Query: 72 KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + + L + WPGP T ++ I + RV L Sbjct: 69 SLVDLARVPLGAEVRAGWPGPTTWLIP--PRPGIPDWLRGAHDSLAVRVTAHPVAAALCR 126 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 +G + SAN SG + + + G + + I + +++ Sbjct: 127 VFGGAIVSTSANLSGHRPARTPVRLWR-QFPRRAIHFLPGRLGGAVRPTAIFDAMSGRRI 185 Query: 190 R 190 R Sbjct: 186 R 186 >gi|300788712|ref|YP_003769003.1| translation factor [Amycolatopsis mediterranei U32] gi|299798226|gb|ADJ48601.1| putative translation factor [Amycolatopsis mediterranei U32] Length = 206 Score = 140 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 70/195 (35%), Gaps = 4/195 (2%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 AL + E L A IA PT++ + L N + R+ I+K + D + Sbjct: 15 RALGQVVEILRADGLIAYPTDSCFALGCRPGNRDGLDRIRAIRKLDHRHHFTLVCQDFAQ 74 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + + +D K PG T +L L KT R+P T+ L+ Sbjct: 75 LGQFVHIDNAVFRAIKAATPGSYTFILPATKEVP-RRLMHEKKKTVGVRIPDHRVTQALL 133 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 G PL + G + + ++ ++D G + +T+V+ + Sbjct: 134 AELGEPLLSSTLLLPGSGEPMTQGWEIKEELDHQLEAVLDSGDCGV-EPTTVVDFSS-GE 191 Query: 189 VRILRPGGLEIETLK 203 ILR G + + Sbjct: 192 AEILRVGAGDPAPFE 206 >gi|238021424|ref|ZP_04601850.1| hypothetical protein GCWU000324_01324 [Kingella oralis ATCC 51147] gi|237868404|gb|EEP69410.1| hypothetical protein GCWU000324_01324 [Kingella oralis ATCC 51147] Length = 207 Score = 140 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 46/192 (23%), Positives = 87/192 (45%), Gaps = 10/192 (5%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 ++++ +ALR+ + G IA PTE+ YG+ + R+ A+R + +KKRP I Sbjct: 23 RLLTHHAPSALRR---HIQRGGLIAYPTESCYGIGANPRHAHALRAILRLKKRPQHKGFI 79 Query: 62 CHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK-TACFRV 119 ++++ ++ P + WP P++ VL + + PL N + RV Sbjct: 80 TIGNNLAQLEPLLQRQPENVRQHLRATWPAPISFVLP--AHPRVLPLLRGNQRNRLAVRV 137 Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P ++L G PL S N+SG+ + + + + + I+ G + K S Sbjct: 138 PNHAVARELCRIAGTPLVSTSCNQSGKRACKSEREV--RRLFGRKLWIVGGRVGKRKQPS 195 Query: 179 TIVNVQCEKKVR 190 IV+ +++R Sbjct: 196 EIVDWAENRRLR 207 >gi|227495471|ref|ZP_03925787.1| RNA binding protein [Actinomyces coleocanis DSM 15436] gi|226831018|gb|EEH63401.1| RNA binding protein [Actinomyces coleocanis DSM 15436] Length = 204 Score = 140 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 39/205 (19%), Positives = 79/205 (38%), Gaps = 8/205 (3%) Query: 1 MQIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56 M + I N +++ L+ G IA+PT++ Y + N + ++ +I+ Sbjct: 1 MTYLEIHPENPQPRLVKQVVSALENGAVIALPTDSGYAICTQMGNKKGMDQIRQIRHLDE 60 Query: 57 MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 + + + + VD + K PGP T +L + T Sbjct: 61 KHNFSLLCHNFGQLGQLVIVDNKAFRTIKAVTPGPYTFILKATKEIP-RMMLNKKKHTIG 119 Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R+P T+ ++E G PL + G+ + + I +I ++I G + G Sbjct: 120 IRIPDHKITQAVVEELGQPLLCSTLIMPGEEEALWEAYDVDDRIGGQIDIVIAGPVGGQG 179 Query: 176 LESTIVNVQCEKKVRILRPGGLEIE 200 +T+V+ V ++R G ++ Sbjct: 180 -ATTVVDFTENTPV-VVREGAGTLD 202 >gi|229496359|ref|ZP_04390079.1| Sua5/YciO/YrdC/YwlC family protein [Porphyromonas endodontalis ATCC 35406] gi|229316937|gb|EEN82850.1| Sua5/YciO/YrdC/YwlC family protein [Porphyromonas endodontalis ATCC 35406] Length = 198 Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 44/189 (23%), Positives = 81/189 (42%), Gaps = 8/189 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 A+++A + + AG I PT+T++GL D+ N A++R++ +K R ++ + + Sbjct: 13 KRAVQEASKVVKAGGIILYPTDTIWGLGCDATNEEAVQRIFTLKGRAESKAMLLLIDSDA 72 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKK 126 + V ++ L PLTL+ ++ P A T R+ F++ Sbjct: 73 KLPGLVREVPDIAYQLIDAA-VSPLTLIYP--GGRNVAPSLIAPEGTLGIRITHEAFSRA 129 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID--GGISKIGLESTIVNVQ 184 L PL SAN SGQ + +S I + ++ S I+++ Sbjct: 130 LCAAVRVPLVSTSANLSGQPAPKIFAE-ISEEIKAAVDYVVPVRQDECTPARPSEIISIG 188 Query: 185 CEKKVRILR 193 +V+ILR Sbjct: 189 LGGEVKILR 197 >gi|256832140|ref|YP_003160867.1| Sua5/YciO/YrdC/YwlC family protein [Jonesia denitrificans DSM 20603] gi|256685671|gb|ACV08564.1| Sua5/YciO/YrdC/YwlC family protein [Jonesia denitrificans DSM 20603] Length = 206 Score = 140 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 38/189 (20%), Positives = 65/189 (34%), Gaps = 4/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + + L G IA PT++ Y L N R+ I+ + + SD S Sbjct: 14 QRLISQVADALRNGAVIAYPTDSGYALGCAMDNHFGSDRIRAIRDLDERHHMTLVCSDFS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + +D + K PGP T +L L+ KT R+P + + Sbjct: 74 QLGQLVILDNHAFRAIKAATPGPYTFILPATKEVP-RRLAHPKKKTVGVRIPDNEIVRSI 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 I G P+ S S + + + +++ G G E T V Sbjct: 133 IAELGEPILSSSLILPDIDSPLTEGWQIKEELDHVLDAVVEAGDC--GEEPTTVIDYSSG 190 Query: 188 KVRILRPGG 196 ++R G Sbjct: 191 SAEVVRVGA 199 >gi|325955575|ref|YP_004239235.1| Sua5/YciO/YrdC/YwlC family protein [Weeksella virosa DSM 16922] gi|323438193|gb|ADX68657.1| Sua5/YciO/YrdC/YwlC family protein [Weeksella virosa DSM 16922] Length = 184 Score = 140 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 44/186 (23%), Positives = 84/186 (45%), Gaps = 7/186 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++ E L G + PT+T+ GL ++ + AI ++Y IK RP LI V + ++ Sbjct: 3 IQEIAERLLNGETMIYPTDTILGLGCNALDDKAIAKIYSIKNRPESKSLILLVDSPARLQ 62 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130 V L+ L L PLT++ D + + T R+ F ++I+ Sbjct: 63 SIVDVPELTWDLIDLN-EKPLTIIYD--DPRGLPKSLVSKDNTIGIRLTKDPFCCQIIQR 119 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS--KIGLESTIVNVQCEKK 188 PL S N S Q + + +S +I +++ ++D + STI+ + + + Sbjct: 120 IKAPLVSTSVNISSQKAAQSYAD-ISPAILEKVDFVVDEAKTFLPKSEPSTIIQLTKDLQ 178 Query: 189 VRILRP 194 V+++R Sbjct: 179 VKVIRE 184 >gi|126465445|ref|YP_001040554.1| translation factor SUA5 [Staphylothermus marinus F1] gi|126014268|gb|ABN69646.1| translation factor SUA5 [Staphylothermus marinus F1] Length = 216 Score = 140 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 53/210 (25%), Positives = 93/210 (44%), Gaps = 9/210 (4%) Query: 1 MQIMSIT----DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56 M I+ N +++A L + + T+T+YG+ D + R+Y +KKR Sbjct: 1 MNILRANFINPSINIIQEAYRILKSCGLVVGVTDTLYGIFADPFRDECVSRIYVVKKR-K 59 Query: 57 MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 P+ S V +++ ++ WPGP+T++L + + + Sbjct: 60 GKPIPLLASSPKAVFSITNINHNLQRFLEVIWPGPVTVILKPIDSI-FSEEIHLGTEKIG 118 Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 FRVP +KL E G + SAN SG N++ + + I L ID G + IG Sbjct: 119 FRVPASPLPRKLAELNGGFITGTSANISGLKPAKNIEEAIK-QLGNNIDLYIDSGTAPIG 177 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRA 205 ST++++ EK + I+R G + ++ R Sbjct: 178 EPSTVIDLTSEKPL-IVRDGVVSYRSIIRL 206 >gi|304388786|ref|ZP_07370842.1| translation factor RimN [Neisseria meningitidis ATCC 13091] gi|304337238|gb|EFM03416.1| translation factor RimN [Neisseria meningitidis ATCC 13091] gi|325205095|gb|ADZ00549.1| protein RimN [Neisseria meningitidis M01-240355] Length = 200 Score = 140 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 45/192 (23%), Positives = 78/192 (40%), Gaps = 5/192 (2%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I ++A RK +L G +A PTE+ YGL A+ +L +KKRP + Sbjct: 12 MLFPRIIAASAQRKLSVYLKKGGLVAYPTESCYGLGCLPTLAKALGKLAHLKKRPQHKGM 71 Query: 61 ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I + ++ + +L + + WP P T +L + + L RV Sbjct: 72 IVIGNQFEQLQPLLQMPSENLQAMLRKEWPAPKTFLLS-AKSCVLPELRGKQRSKLAVRV 130 Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P ++L PL S NR+G+ + + + I+ G I + S Sbjct: 131 PAHVGARRLCLALQTPLVSTSCNRAGKRACRTEREVRRQF--GRDVWIVGGRIGRQKSPS 188 Query: 179 TIVNVQCEKKVR 190 I++ + K++R Sbjct: 189 QIIDGETGKRLR 200 >gi|257064847|ref|YP_003144519.1| Sua5/YciO/YrdC/YwlC family protein [Slackia heliotrinireducens DSM 20476] gi|256792500|gb|ACV23170.1| Sua5/YciO/YrdC/YwlC family protein [Slackia heliotrinireducens DSM 20476] Length = 202 Score = 140 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 52/204 (25%), Positives = 89/204 (43%), Gaps = 12/204 (5%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA---VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 ++++ A L+ G PI PT+TVYG+ ++ P A +Y+IK+R A + V Sbjct: 6 ETSSFDDALAALNVGRPIIFPTDTVYGIGLAVGLAQTPQA---IYDIKERDAGKAIPWLV 62 Query: 65 SDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 S + + V + +A++FWPGPLTL++ ST + T R+P Sbjct: 63 GQHSSLLLYGQDVPEFAQTMARVFWPGPLTLIVRAAST--VPKAFCGPDGTIALRMPDDD 120 Query: 124 -TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 +LI G PLA SAN G I + + + + + + G+ ST+ + Sbjct: 121 TALELIRRCGFPLATSSANLQGHKPPRRFSEIDPAVL-SRVSAALGDNVPRSGVSSTVAD 179 Query: 183 VQCEKKVRILRPGGLEIETLKRAI 206 + I+R G + + Sbjct: 180 CTGDHP-EIIRVGAITAADFAALL 202 >gi|121608594|ref|YP_996401.1| Sua5/YciO/YrdC/YwlC family protein [Verminephrobacter eiseniae EF01-2] gi|121553234|gb|ABM57383.1| Sua5/YciO/YrdC/YwlC family protein [Verminephrobacter eiseniae EF01-2] Length = 211 Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats. Identities = 47/198 (23%), Positives = 80/198 (40%), Gaps = 6/198 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 LR+A L G +A+PT++ Y LA + A RL I++ + L D+S Sbjct: 14 PRLLRQAAALLRQGGIVAVPTDSSYALACHLDDKDAAERLRRIRQVDDKHHLTLLCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127 + A VD L +L PGP T +L+ +S KT RVP + L Sbjct: 74 ELASCARVDNRQYRLLRLGTPGPYTFILEATREVP-RRVSHPARKTLGLRVPDHKGLQLL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ--- 184 ++ +G PL + +G N + ++ I+D G +T++++ Sbjct: 133 LQLHGAPLLATTLIPAGASEPLNDPQEIRRHYAGQLAAIVDAGACPR-EPTTVLDLTPMG 191 Query: 185 CEKKVRILRPGGLEIETL 202 ++R G + L Sbjct: 192 VGGAPEVVRAGRGSLPAL 209 >gi|301168423|emb|CBW28013.1| conserved hypothetical protein [Bacteriovorax marinus SJ] Length = 207 Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats. Identities = 46/196 (23%), Positives = 81/196 (41%), Gaps = 4/196 (2%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D L+KA E L G + PT+T + + D N + +LY +K + I Sbjct: 11 DDRVLKKASETLKDGGLVCYPTDTNWIIVCDPFNKKGLEKLYRVKNEGPLKHYSLICDTI 70 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKK 126 S + A + + + + PG T + + + + K R P T+ Sbjct: 71 SHAGEVAYIHDSAFKMIRKKVPGHYTFIFEAKKKITRAVQANKSDKEVGVRFCPDSITQN 130 Query: 127 LIETYGHPLAIP--SANRSG-QISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 LIE +G L +A+ G ++ T + + + + +IID G + ESTIV++ Sbjct: 131 LIEIHGDVLLSTNITADLLGLELGETFYSYQIEETFRGPLDMIIDPGEYEFVGESTIVDL 190 Query: 184 QCEKKVRILRPGGLEI 199 E +V ++R G Sbjct: 191 SVEGEVEVIREGAGPW 206 >gi|15837521|ref|NP_298209.1| hypothetical protein XF0919 [Xylella fastidiosa 9a5c] gi|81547878|sp|Q9PEV9|RIMN_XYLFA RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|9105840|gb|AAF83729.1|AE003931_6 conserved hypothetical protein [Xylella fastidiosa 9a5c] Length = 187 Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats. Identities = 50/184 (27%), Positives = 80/184 (43%), Gaps = 7/184 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +A L G IA PTE V+GL D R TA+ L IK+R + LI ++++ ++ Sbjct: 7 LSEAVTALQQGGVIAYPTEAVWGLGCDPRQETAVHTLLNIKQRASGKGLILVTAELNTLQ 66 Query: 72 KHASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 +D P LH + WPGP T VL ++T T + R+ L Sbjct: 67 DWLDLDTLSPERLHEVQTSWPGPHTWVLP--ASTRAPHWITGHHNGLAVRISAHPLVSAL 124 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + L SAN +GQ + L S+ + I+DG + ++I + + Sbjct: 125 CRAWNMALISTSANVAGQPPARR-REDLDPSLLPHLAGIVDGPTGGLAQPTSIRDARSGH 183 Query: 188 KVRI 191 +R+ Sbjct: 184 ILRL 187 >gi|308188319|ref|YP_003932450.1| hypothetical protein Pvag_2851 [Pantoea vagans C9-1] gi|308058829|gb|ADO11001.1| Uncharacterized protein yrdC [Pantoea vagans C9-1] Length = 190 Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats. Identities = 45/186 (24%), Positives = 72/186 (38%), Gaps = 8/186 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++L E L+ IA PTE V+GL D + +A+ L +K+RP LI +D S Sbjct: 7 ADSLETCLEHLNRQAVIAYPTEAVFGLGCDPDSESAVMALLALKQRPVEKGLILIAADYS 66 Query: 69 MVKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-T 124 ++ + S LS W P + + T + RV Sbjct: 67 QLEPYISARELSVVQRERMFACW--PGPVTFVVPVPPQTPRWLTGQFDSLAIRVSDHPDV 124 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + L +G PL SAN SGQ + + + P ++ G S I +V Sbjct: 125 QALCRAFGKPLVSTSANLSGQPPCRTAEEV-KQQFGEPFP-VLSGKTGGRLNPSEIRDVI 182 Query: 185 CEKKVR 190 + +R Sbjct: 183 SGELIR 188 >gi|329937663|ref|ZP_08287182.1| translation factor SUA5 [Streptomyces griseoaurantiacus M045] gi|329303062|gb|EGG46950.1| translation factor SUA5 [Streptomyces griseoaurantiacus M045] Length = 206 Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats. Identities = 31/196 (15%), Positives = 68/196 (34%), Gaps = 4/196 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + + + + G + PT++ + L + + R+ I++ + + D + Sbjct: 14 ARTIGQVADSIRDGALVVYPTDSCFALGCRLGSRDGMERIRSIRQLDSRHHFTLVCRDFA 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + VD K PG T +L L +T R+P + L Sbjct: 74 QLGQFVRVDNDVFRAVKASTPGSYTFILPATPEVP-RKLLHPKKRTVGVRIPDHRVVQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + + V + + + +ID G +T+V+ Sbjct: 133 LAELGEPLLSSTLLLPDEEEPMTVGWEIKERLDHVVDAVIDSGDCGT-EPTTVVDFSS-G 190 Query: 188 KVRILRPGGLEIETLK 203 + I+R G + + Sbjct: 191 EAEIVRRGAGDPSRFE 206 >gi|88705375|ref|ZP_01103086.1| Sua5/YciO/YrdC/YwlC family protein [Congregibacter litoralis KT71] gi|88700465|gb|EAQ97573.1| Sua5/YciO/YrdC/YwlC family protein [Congregibacter litoralis KT71] Length = 179 Score = 139 bits (352), Expect = 4e-31, Method: Composition-based stats. Identities = 47/182 (25%), Positives = 80/182 (43%), Gaps = 5/182 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +R L A IA PTE V+GL+ D + A++RL ++K+RPA LI +D + + Sbjct: 1 MRLCANALAADGVIACPTEAVWGLSCDPFSEVAVQRLLDLKQRPAHKGLILVAADEAQLD 60 Query: 72 KHASVDPLSLHL-AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIE 129 P SL ++ WPGP T ++ + PL ++ RV + L Sbjct: 61 FLLEGLPESLRQKIRVSWPGPNTWLVPHRG--RVSPLVHGRFESVAVRVSGHPDVRALCR 118 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 +G PL SAN +G + + + + + ++ G + S I +V ++ Sbjct: 119 VHGGPLVSSSANVAGSPAPKTLLAV-RNYFGTGLDAVLPGQVGSADRPSVIRDVFTDEVF 177 Query: 190 RI 191 R Sbjct: 178 RA 179 >gi|319897809|ref|YP_004136006.1| ribosome maturation factor sua5/ycio/yrdc [Haemophilus influenzae F3031] gi|317433315|emb|CBY81691.1| predicted ribosome maturation factor SUA5/yciO/yrdC [Haemophilus influenzae F3031] Length = 183 Score = 139 bits (352), Expect = 4e-31, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 72/182 (39%), Gaps = 8/182 (4%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 + + L +A PTE V+GL + ++ +A+++L ++K+RP LI + + Sbjct: 4 EQIADALRQNQVVAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRP 63 Query: 73 HAS---VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLI 128 ++ L + + P T ++ STT T + R K L Sbjct: 64 FVDFEQINDEQLSRLQGKYERPTTWIVPAKSTT--PHFLTGKFDSIAIRLCDHPSVKALC 121 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E G L SAN +G+ + + P ++D + + S I +++ + Sbjct: 122 ELSGFALTSTSANLTGEPPCRTADEV-RLQFGSDFP-VLDEMVGRAHNPSEIRDLRTNQL 179 Query: 189 VR 190 R Sbjct: 180 FR 181 >gi|307708641|ref|ZP_07645104.1| Sua5/YciO/YrdC family protein [Streptococcus mitis NCTC 12261] gi|307615215|gb|EFN94425.1| Sua5/YciO/YrdC family protein [Streptococcus mitis NCTC 12261] Length = 140 Score = 139 bits (352), Expect = 4e-31, Method: Composition-based stats. Identities = 44/136 (32%), Positives = 71/136 (52%), Gaps = 5/136 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + L+ G + +PTETVYGL + + A+ +Y++K+RP L +++ + + Sbjct: 2 MDRIRQELENGGAVVLPTETVYGLFAKALDEKAVDHVYQLKRRPRDKALNLNIASLEDIL 61 Query: 72 KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 + P L L + F PGPLT++L+ + + + L T FR+P T LI Sbjct: 62 HFSKNQPTYLQKLVETFLPGPLTIILE--ANDRVPYWVNSGLATVGFRMPSHPITLDLIR 119 Query: 130 TYGHPLAIPSANRSGQ 145 G PL PSAN SGQ Sbjct: 120 ETG-PLIGPSANISGQ 134 >gi|254784309|ref|YP_003071737.1| protein YrdC [Teredinibacter turnerae T7901] gi|237687380|gb|ACR14644.1| protein YrdC [Teredinibacter turnerae T7901] Length = 186 Score = 139 bits (352), Expect = 4e-31, Method: Composition-based stats. Identities = 39/183 (21%), Positives = 69/183 (37%), Gaps = 6/183 (3%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 A+ + + L+ G IA PTE V+GL D N A+ ++ +K+R LI + + + Sbjct: 8 AIHRCVDALNKGDVIAYPTEAVWGLGCDPFNQHAVDKVLWLKRRKPEKGLIIVAASAAQI 67 Query: 71 KKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + + P WPGP T ++ I T RV + L Sbjct: 68 QWLLQGITPAQEQQLSASWPGPNTWLIPHHG--RIPANVCGQHATIAVRVSSHPVVRALC 125 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 + YG P+ SAN + + ++ G + S I +++ + Sbjct: 126 QAYGGPIVSTSANPQALRPARDATQVRH--YFRDSVYYAPGRVGGNPTPSVIRDLRSGQI 183 Query: 189 VRI 191 +R Sbjct: 184 IRP 186 >gi|319760358|ref|YP_004124296.1| putative ribosome maturation factor [Candidatus Blochmannia vafer str. BVAF] gi|318039072|gb|ADV33622.1| putative ribosome maturation factor [Candidatus Blochmannia vafer str. BVAF] Length = 191 Score = 139 bits (352), Expect = 4e-31, Method: Composition-based stats. Identities = 51/196 (26%), Positives = 81/196 (41%), Gaps = 12/196 (6%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I SIT+ + ++ L I PTE+V+GL + + +AIR L +IK+R L Sbjct: 1 MIINSITEYS-IKNLSMQLKKNRVIIYPTESVFGLGCNPDSESAIRTLLKIKRRSWKKGL 59 Query: 61 ICHVSDISMVKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 I ++ S + K+ L WPGP+T V + T + Sbjct: 60 ILVAANYSQLLKYVDDRLLSDNQRLLVFSTWPGPVTWVFP--ARVGTPYWLTGQFSSIAV 117 Query: 118 RVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 RV + L +G PL SAN SG V + + +P++ + +GL Sbjct: 118 RVSDFKPIRYLCLDFGKPLVSTSANLSGYPPARTVIEVHNQFRYYNLPIM---HHNVLGL 174 Query: 177 --ESTIVNVQCEKKVR 190 S I +V + +R Sbjct: 175 PCPSEIRDVVSGRIIR 190 >gi|269215063|ref|ZP_05987667.2| protein RimN [Neisseria lactamica ATCC 23970] gi|269208379|gb|EEZ74834.1| protein RimN [Neisseria lactamica ATCC 23970] Length = 189 Score = 139 bits (352), Expect = 5e-31, Method: Composition-based stats. Identities = 45/192 (23%), Positives = 79/192 (41%), Gaps = 5/192 (2%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I ++A RK +L G +A PTE+ YGL A+ +L +KKRP + Sbjct: 1 MLFPRIIAASAQRKLSVYLKKGGLVAYPTESCYGLGCLPTLAKALGKLAHLKKRPQHKGM 60 Query: 61 ICHVSDISMVKKHASVDPLSLHLA-KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I + ++ + +L + WP P T +L + + L R+ Sbjct: 61 IVIGNQFEQLQPLLQMPSENLQDMLRKEWPAPKTFLLS-AKSCVLPELRGKQRSKLAVRI 119 Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P ++L + G PL S NR+G+ + + + I+ G I + S Sbjct: 120 PDHAGARRLCQALGMPLVSTSCNRAGKRACRAEREVRRQF--GRDVWIVGGRIGRQKSPS 177 Query: 179 TIVNVQCEKKVR 190 I++ + K++R Sbjct: 178 QIIDGETGKRLR 189 >gi|268532948|ref|XP_002631602.1| Hypothetical protein CBG20783 [Caenorhabditis briggsae] gi|187023055|emb|CAP37734.1| hypothetical protein CBG_20783 [Caenorhabditis briggsae AF16] Length = 216 Score = 139 bits (352), Expect = 5e-31, Method: Composition-based stats. Identities = 65/199 (32%), Positives = 94/199 (47%), Gaps = 13/199 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAV-DSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 A+ A G +A+PT+T+YG++ + RLY +K+RP PL + Sbjct: 16 EEAIDTAVSVFLRGGIVALPTDTLYGISTLLPFS----DRLYALKQRPFEKPLGIFLPSP 71 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126 + + K S +S LA PGP+TL+ + L T + + RVP C Sbjct: 72 TSM-KLVSKQTISDELANCLLPGPVTLMFERLPT--LPAEFNPGVANVACRVPDCPIVSM 128 Query: 127 LIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGG-ISKIGLESTIVNVQ 184 + G PLA SAN SG + T++ H + I LI+D G I G STIV++ Sbjct: 129 ICRKLGQPLAQTSANVSGSPLNPTSIDH--FKDLQPYIDLILDNGQIVSTGEGSTIVDLT 186 Query: 185 CEKKVRILRPGGLEIETLK 203 E K RI+R G E ET+K Sbjct: 187 VESKFRIVRSGCAEKETMK 205 >gi|182682384|ref|YP_001830544.1| SUA5/yciO/yrdC domain-containing protein [Xylella fastidiosa M23] gi|182632494|gb|ACB93270.1| SUA5/yciO/yrdC domain [Xylella fastidiosa M23] Length = 209 Score = 139 bits (352), Expect = 5e-31, Method: Composition-based stats. Identities = 50/184 (27%), Positives = 80/184 (43%), Gaps = 7/184 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +A L G IA PTE V+GL D R TA+ L IK+R + LI ++++ ++ Sbjct: 29 LSEAVTALQQGDVIAYPTEAVWGLGCDPRQETAVHTLLNIKQRASGKGLILVTAELNTLQ 88 Query: 72 KHASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 +D P LH + WPGP T VL ++T T + R+ L Sbjct: 89 DWLDLDTLSPERLHEVQASWPGPHTWVLP--ASTRAPHWITGHHNGLAVRISAHPLVSAL 146 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + L SAN +GQ + L S+ + I+DG + ++I + + Sbjct: 147 CRAWNMALISTSANVAGQPPARR-REDLDPSLLPHLAGIVDGPTGGLAQPTSIRDARSGH 205 Query: 188 KVRI 191 +R+ Sbjct: 206 ILRL 209 >gi|297571292|ref|YP_003697066.1| Sua5/YciO/YrdC/YwlC family protein [Arcanobacterium haemolyticum DSM 20595] gi|296931639|gb|ADH92447.1| Sua5/YciO/YrdC/YwlC family protein [Arcanobacterium haemolyticum DSM 20595] Length = 208 Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats. Identities = 37/194 (19%), Positives = 75/194 (38%), Gaps = 4/194 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + K + L G IA+PT++ Y + N + R+ I++ + D + Sbjct: 14 QRLVDKVVDRLRRGEVIAMPTDSGYAICCMMANKDGLERIRRIRQVGDKHHFTLLCHDFA 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + VD L K PGP T +L T R+P T+ + Sbjct: 74 QLGQLVIVDNAVFRLVKSLTPGPYTFILKGTKEVP-RMTLNPKKATVGVRIPDHKITQAI 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + T G PL + G+ + ++ + + ++++G + G +T++++ + Sbjct: 133 VNTLGEPLLSSTLIMPGESEPMSQGWEIADLLTNAVDVVVEGPVGVDG-PTTVLDM-SDG 190 Query: 188 KVRILRPGGLEIET 201 V I R G + Sbjct: 191 NVTIARVGAGDTSM 204 >gi|282857413|ref|ZP_06266646.1| Sua5/YciO/YrdC/YwlC family protein [Pyramidobacter piscolens W5455] gi|282584698|gb|EFB90033.1| Sua5/YciO/YrdC/YwlC family protein [Pyramidobacter piscolens W5455] Length = 140 Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats. Identities = 40/113 (35%), Positives = 55/113 (48%), Gaps = 3/113 (2%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81 G +A PTETVYGL ++ + A++++Y K RP+ NPLI H V++ A VD + Sbjct: 30 GELVAFPTETVYGLGGNALDGEAVKKIYAAKGRPSDNPLILHFPSPEAVERAAFVDDRAR 89 Query: 82 HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGH 133 L FWPGPLTLVL + + L T R+P G Sbjct: 90 RLMARFWPGPLTLVLPARDC--VSKEARGGLTTVGCRMPDYPAALAFFAACGV 140 >gi|326924468|ref|XP_003208449.1| PREDICTED: hypothetical protein LOC100546811 [Meleagris gallopavo] Length = 856 Score = 139 bits (351), Expect = 6e-31, Method: Composition-based stats. Identities = 46/220 (20%), Positives = 93/220 (42%), Gaps = 12/220 (5%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++++++ + L G IPT+TVY L P A+ + + K++ P+ +S + Sbjct: 593 ASSVKRIADILKNGGTCGIPTDTVYVLVAACNRPDAVEKAHRSKQQAQERPMSLWISSLK 652 Query: 69 MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDI-----HPLSTANLKTACFRVP-C 121 ++ PL WP P++LV+ D ++ R+P C Sbjct: 653 QLEPAKHLFSPLLWDFMDAAWPSPISLVIPRGKWVDFLGMKDSAKYVGTPQSVAIRIPDC 712 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 T LI+ G P+ + SAN +G+ T+ + + + ++ ++ G S + ST+V Sbjct: 713 SVTTHLIDLVG-PIVVTSANPTGEADTTHHNQVY-AKLGDKVDAVLCDGPSPENIASTVV 770 Query: 182 NVQ--CEKKVRILRPGGLEIETLKRAIS-VELEYCVDETS 218 + + R G + + + + V+ +Y V S Sbjct: 771 DCTKIDSGNIGFFRVGIIPKSQVLQILEQVQKKYSVVPNS 810 >gi|33440306|ref|ZP_00141878.1| COG0009: Putative translation factor (SUA5) [Pasteuria nishizawae str. North American] Length = 150 Score = 139 bits (351), Expect = 6e-31, Method: Composition-based stats. Identities = 41/124 (33%), Positives = 67/124 (54%), Gaps = 3/124 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 A+++A + L G +A PTETVYGL + +AI+R++ K RP NPLI H +++ Sbjct: 27 DTAIQEAAQCLQKGGVVAFPTETVYGLGALATRTSAIQRVFTAKNRPHDNPLILHFANVQ 86 Query: 69 M-VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 ++ S+ +L + PGP+T V+ + PL+TA+L T RVP + Sbjct: 87 RILQALPSLPQALQNLLQSTMPGPITWVVPHT-IPWVSPLATASLPTIAVRVPSHPIAQA 145 Query: 127 LIET 130 L++ Sbjct: 146 LLQR 149 >gi|212288257|sp|B0U4N0|RIMN_XYLFM RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN Length = 187 Score = 139 bits (351), Expect = 6e-31, Method: Composition-based stats. Identities = 51/184 (27%), Positives = 81/184 (44%), Gaps = 7/184 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +A L G IA PTE V+GL D R TA+ L IK+R + LI ++++ ++ Sbjct: 7 LSEAVTALQQGGVIAYPTEAVWGLGCDPRQETAVHTLLNIKQRASGKGLILVTAELNTLQ 66 Query: 72 KHASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 +D P LH + WPGP T VL ++T T + R+ L Sbjct: 67 DWLDLDTLSPERLHEVQASWPGPHTWVLP--ASTRAPHWITGHHNGLAVRISAHPLVSAL 124 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + L SAN +GQ S + L S+ + I+DG + ++I + + Sbjct: 125 CRAWNMALISTSANVAGQ-SPARRREDLDPSLLPHLAGIVDGPTGGLAQPTSIRDARSGH 183 Query: 188 KVRI 191 +R+ Sbjct: 184 ILRL 187 >gi|225620696|ref|YP_002721954.1| Sua5/YciO/YrdC/YwlC family protein [Brachyspira hyodysenteriae WA1] gi|225215516|gb|ACN84250.1| Sua5/YciO/YrdC/YwlC family protein [Brachyspira hyodysenteriae WA1] Length = 198 Score = 139 bits (351), Expect = 6e-31, Method: Composition-based stats. Identities = 53/201 (26%), Positives = 94/201 (46%), Gaps = 12/201 (5%) Query: 4 MSITDSNALRKAC----EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 + +S ++ A + ++ G + PT+TVYG+ D+ N A+ R+Y IK R P Sbjct: 5 LDKNNSESIEYAANEVIKVINDGGIVVSPTDTVYGMLADAFNTDAVNRIYTIKDREKNKP 64 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 L+ D+ VKK + D + K PG LT ++ LL ++ + T R+ Sbjct: 65 LLILSKDLESVKKFS--DKEVPDIIKNNIPGELTFIVPLLE--ELKNKFSYLKDTVALRI 120 Query: 120 PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 P ++I +PL PSAN SG I + L+ + LI++ G+ + + ST Sbjct: 121 PNDKYMQIILKGTNPLVAPSANPSGYGVILDGNE-LAELYKDKADLIVNAGVLENKMPST 179 Query: 180 IVNVQCEKKVRILRPGGLEIE 200 + + ++LR G + ++ Sbjct: 180 LYDCLAN---KVLRQGSVHLD 197 >gi|256783346|ref|ZP_05521777.1| hypothetical protein SlivT_02520 [Streptomyces lividans TK24] Length = 206 Score = 139 bits (351), Expect = 7e-31, Method: Composition-based stats. Identities = 34/189 (17%), Positives = 67/189 (35%), Gaps = 4/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++ + + + +G IA PT++ Y L + I R+ I++ + D + Sbjct: 14 PRSIAQVADSVRSGALIAYPTDSCYALGCRLGSRDGIDRIRSIRQLDNRHHFTLVCQDFA 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + +D K PG T +L L KT R+P T+ L Sbjct: 74 QLGQFVQIDNDVFRAIKASTPGSYTFILPATREVP-RALQHPKKKTVGVRIPDHVVTQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + + + + + ++D G +T+V+ Sbjct: 133 LAELGEPLLSSTLLLPDEEEPMTQGWEIKDRLDHVLDAVVDSGDCGT-EPTTVVDFSG-G 190 Query: 188 KVRILRPGG 196 + I+R G Sbjct: 191 EAEIVRHGA 199 >gi|21225634|ref|NP_631413.1| hypothetical protein SCO7360 [Streptomyces coelicolor A3(2)] gi|289767219|ref|ZP_06526597.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces lividans TK24] gi|8052373|emb|CAB92203.1| conserved hypothetical protein SC9H11.14c [Streptomyces coelicolor A3(2)] gi|289697418|gb|EFD64847.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces lividans TK24] Length = 200 Score = 139 bits (350), Expect = 7e-31, Method: Composition-based stats. Identities = 34/189 (17%), Positives = 67/189 (35%), Gaps = 4/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++ + + + +G IA PT++ Y L + I R+ I++ + D + Sbjct: 8 PRSIAQVADSVRSGALIAYPTDSCYALGCRLGSRDGIDRIRSIRQLDNRHHFTLVCQDFA 67 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + +D K PG T +L L KT R+P T+ L Sbjct: 68 QLGQFVQIDNDVFRAIKASTPGSYTFILPATREVP-RALQHPKKKTVGVRIPDHVVTQAL 126 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + + + + + ++D G +T+V+ Sbjct: 127 LAELGEPLLSSTLLLPDEEEPMTQGWEIKDRLDHVLDAVVDSGDCGT-EPTTVVDFSG-G 184 Query: 188 KVRILRPGG 196 + I+R G Sbjct: 185 EAEIVRHGA 193 >gi|148244943|ref|YP_001219637.1| Sua5 family translation factor [Candidatus Vesicomyosocius okutanii HA] gi|146326770|dbj|BAF61913.1| translation factor, Sua5/YciO/YrdC/YwlC family [Candidatus Vesicomyosocius okutanii HA] Length = 204 Score = 139 bits (350), Expect = 7e-31, Method: Composition-based stats. Identities = 46/206 (22%), Positives = 86/206 (41%), Gaps = 10/206 (4%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 +++ I N L + + L G I PT++ Y L N + R+ I+ Sbjct: 3 KLLEIHPKNPQIRLLEQVADELRRGAVIVYPTDSGYALGATLGNKNGLERIRCIRNLSKQ 62 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 + + D++ + ++A +D +S L K PG T VL + L A KT F Sbjct: 63 HYFTLMMRDLAHIGEYAKLDNISFRLLKRILPGSYTFVLQGTRDVP-NRLLHAKKKTIGF 121 Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 RV + L++ P+ S ++ + S+ K + +IIDGG + Sbjct: 122 RVSNHGLVQALLDVLNEPIINTSLIIKDCEF-FDIDDVY-DSLEKRVDVIIDGGYCPL-E 178 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETL 202 +T++++ + I+R G +I + Sbjct: 179 PTTVIDLSLS-SINIIRQGAGDISLI 203 >gi|145631687|ref|ZP_01787450.1| hypothetical protein CGSHi22421_05142 [Haemophilus influenzae R3021] gi|144982710|gb|EDJ90246.1| hypothetical protein CGSHi22421_05142 [Haemophilus influenzae R3021] Length = 183 Score = 139 bits (350), Expect = 7e-31, Method: Composition-based stats. Identities = 38/182 (20%), Positives = 73/182 (40%), Gaps = 8/182 (4%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 + + L +A PTE V+GL + ++ +A+++L ++K+RP LI + + Sbjct: 4 EQIADALRQNQVVAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRP 63 Query: 73 HAS---VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLI 128 ++ L + + P T ++ STT T + R K L Sbjct: 64 FVDFEQINDEQLSRLQGKYERPTTWIVPAKSTT--PHFLTGKFDSIAIRLCDHPSVKALC 121 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E G L SAN +G+ + S + P ++D + + S I +++ + Sbjct: 122 EITGFALTSTSANLTGEPPCRTADEV-RSQFGADFP-VLDEIVGEALNPSEIRDLRTNQL 179 Query: 189 VR 190 R Sbjct: 180 FR 181 >gi|319775401|ref|YP_004137889.1| ribosome maturation factor SUA5/yciO/yrdC [Haemophilus influenzae F3047] gi|317449992|emb|CBY86204.1| predicted ribosome maturation factor SUA5/yciO/yrdC [Haemophilus influenzae F3047] Length = 183 Score = 139 bits (350), Expect = 8e-31, Method: Composition-based stats. Identities = 38/182 (20%), Positives = 72/182 (39%), Gaps = 8/182 (4%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 + E L +A PTE V+GL + ++ +A+++L ++K+RP LI + + Sbjct: 4 EQIAETLRQNQVVAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRP 63 Query: 73 HAS---VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLI 128 ++ L + + P T ++ STT T + R K L Sbjct: 64 FVDFEQINDEQLSRLQGKYERPTTWIVPAKSTT--PHFLTGKFDSIAIRLCDHPSVKALC 121 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E G L SAN +G+ + + P ++D + + S I +++ + Sbjct: 122 ELTGFALTSTSANLTGEPPCRTADEV-RLQFGSDFP-VLDEMVGRAHNPSEIRDLRTNQL 179 Query: 189 VR 190 R Sbjct: 180 FR 181 >gi|94676536|ref|YP_588859.1| hypothetical protein BCI_0417 [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|212277667|sp|Q1LT55|RIMN_BAUCH RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|94219686|gb|ABF13845.1| conserved hypothetical protein [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 198 Score = 139 bits (350), Expect = 9e-31, Method: Composition-based stats. Identities = 44/186 (23%), Positives = 71/186 (38%), Gaps = 14/186 (7%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + L +A PTE ++GL D + A+ L +KKR LI ++ + Sbjct: 18 IYHIIKLLHQQQVVAYPTEAMFGLGCDPDSEKAVHTLLTLKKRDWQKGLILVAANYEQLA 77 Query: 72 KHASVDPL---SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 + + L WPGP+T + +TT T T R+ + L Sbjct: 78 NYIDDNSLNINQRARMFSLWPGPITWTIPARTTTPC--WLTGKFSTLAVRISAFKPVRML 135 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPL---IIDGGISKIGLESTIVNVQ 184 +G P+ SAN SGQ N+ + P+ II+G S S I + Sbjct: 136 CLAFGKPIVSTSANVSGQSPARNICEV-RQQFGAAFPVMDQIIEGRYS----PSEIRDAI 190 Query: 185 CEKKVR 190 + +R Sbjct: 191 SGQLIR 196 >gi|255535929|ref|YP_003096300.1| Sua5 YciO YrdC YwlC family protein [Flavobacteriaceae bacterium 3519-10] gi|255342125|gb|ACU08238.1| Sua5 YciO YrdC YwlC family protein [Flavobacteriaceae bacterium 3519-10] Length = 190 Score = 139 bits (350), Expect = 9e-31, Method: Composition-based stats. Identities = 47/194 (24%), Positives = 85/194 (43%), Gaps = 7/194 (3%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 M + N ++ + L +G I PT+T++G+ D+ N AI +++EIK+R +I Sbjct: 1 MPKSTLNTMQNLIDTLISGGTILYPTDTIWGIGCDATNVEAINKIFEIKRREKSKSMIVL 60 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCG 122 V + ++ V L+ + P+T++ D + A + R + Sbjct: 61 VESVKRLQDIVDVPELAWDIMD-LSEKPVTIIYDNPKG--LPAELLAEDGSIGIRLIKDP 117 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL--ESTI 180 + KKLI PL SAN SG S +S I + + D K+ S++ Sbjct: 118 YLKKLIGKLNKPLVSTSANLSGSKSPMKFSD-ISDEIISSVDAVSDENHDKVSEYSGSSV 176 Query: 181 VNVQCEKKVRILRP 194 + + + +V+ILR Sbjct: 177 IRMWMDGRVKILRE 190 >gi|315226266|ref|ZP_07868054.1| Sua5/YciO/YrdC/YwlC family protein [Parascardovia denticolens DSM 10105] gi|315120398|gb|EFT83530.1| Sua5/YciO/YrdC/YwlC family protein [Parascardovia denticolens DSM 10105] Length = 308 Score = 139 bits (350), Expect = 9e-31, Method: Composition-based stats. Identities = 54/222 (24%), Positives = 94/222 (42%), Gaps = 16/222 (7%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 + L AG + IPT+TVYG+ D R+ + R++E K RP + +D +K Sbjct: 45 EVKNLLSAGHVVVIPTDTVYGIIADPRSQVGVGRIFEAKSRPRTKSVQILCADAPQAQKL 104 Query: 74 ASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA-NLKTACFRVPCGFTKKLIETY 131 + P + L F G + LV + + ++ R P G + I + Sbjct: 105 GLIFPQIYQDLLAEFPKGAVCLVCPVKDDCQLVTTRQEKGYRSQAVRFPAGRQARAIIDF 164 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN--------- 182 P+A SANRSG S T V+ ++ + +PL +DGG + + ST+++ Sbjct: 165 VGPVAASSANRSGDKSATTVQEAIAE-LGGSVPLYLDGGATSGPVASTVISLDPASMAQA 223 Query: 183 VQCEKK----VRILRPGGLEIETLKRAISVELEYCVDETSTP 220 + E+ +++LR G + +L + E P Sbjct: 224 LSGEEPLNPQLKVLRRGVVPESSLNAWALSRVRGLGGENRLP 265 >gi|126348032|emb|CAJ89752.1| putative translation factor [Streptomyces ambofaciens ATCC 23877] Length = 200 Score = 138 bits (349), Expect = 9e-31, Method: Composition-based stats. Identities = 34/189 (17%), Positives = 66/189 (34%), Gaps = 4/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++ + + + + IA PT++ Y L + I R+ I++ + + D + Sbjct: 8 PRSIAQVADSVRSDALIAYPTDSCYALGCRLGSRDGIDRIRSIRQLDSRHHFTLVCQDFA 67 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKL 127 + + +D K PG T +L L KT R+P + L Sbjct: 68 QLGQFVQIDNDVFRAIKASTPGSYTFILPATREVP-RMLQHPKKKTVGVRIPDHVVTQSL 126 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + G+ + + + +ID G +T+V+ Sbjct: 127 LAELGEPLLSSTLLLPGEEEPMTQGWEIKDRLDHVVDAVIDSGDCGT-EPTTVVDFSGGG 185 Query: 188 KVRILRPGG 196 I+R G Sbjct: 186 -AEIVRRGA 193 >gi|113460156|ref|YP_718212.1| Sua5 family translation factor [Haemophilus somnus 129PT] gi|112822199|gb|ABI24288.1| possible translation factor, Sua5 family [Haemophilus somnus 129PT] Length = 192 Score = 138 bits (349), Expect = 9e-31, Method: Composition-based stats. Identities = 41/194 (21%), Positives = 72/194 (37%), Gaps = 8/194 (4%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M ++ + + E L +A PTE V+GL + + +A+ +L +K+RP L Sbjct: 1 MSTYFQNNNMNITQIIEKLKQNEVVAYPTEAVFGLGCNPFSQSAVEKLLILKQRPREKGL 60 Query: 61 ICHVSDISMVKKHAS---VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 I + ++ + +P P+T ++ + DI N + Sbjct: 61 ILVAPKLDYFFSFIDKEQINSQHWQKLQQTYPRPITWIVP--AKKDIAKFLCGNFNSIAI 118 Query: 118 RVPCGFTKK-LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 RV K L E G L SAN SG + + P ++D + Sbjct: 119 RVSQHPAIKILCEQTGFALTSTSANLSGIAPCKTSDEV-RLQFGADFP-VLDMSVGSAAK 176 Query: 177 ESTIVNVQCEKKVR 190 S I ++ + VR Sbjct: 177 PSEIRDLFTNQLVR 190 >gi|325267209|ref|ZP_08133874.1| translation factor RimN [Kingella denitrificans ATCC 33394] gi|324981326|gb|EGC16973.1| translation factor RimN [Kingella denitrificans ATCC 33394] Length = 207 Score = 138 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 77/188 (40%), Gaps = 5/188 (2%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 I AL + +L G IA PTE+ YGL + AIRR+ +KKRP LI Sbjct: 23 RIQSPRALWRLRAYLKRGGIIAYPTESCYGLGGLPTHAGAIRRIIRLKKRPQNKGLIVIG 82 Query: 65 SDISMVKK-HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 +++ ++ + + + WP P T VL + L A + RVP Sbjct: 83 NELQQLQPLLCRLPDDTQQQLQNIWPAPKTFVLSCRTKVH-PMLRGARRRQLATRVPDHL 141 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 +++ L S NR+ Q N K +++ I+ G + K S I++ Sbjct: 142 LARQICREAKSALISTSCNRAKQKPCRNSKEA-RKRFGRQV-WILGGQVGKRKNPSKIID 199 Query: 183 VQCEKKVR 190 + ++R Sbjct: 200 WSTKTQLR 207 >gi|148827835|ref|YP_001292588.1| hypothetical protein CGSHiGG_06565 [Haemophilus influenzae PittGG] gi|212277677|sp|A5UHE9|RIMN_HAEIG RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|148719077|gb|ABR00205.1| hypothetical protein CGSHiGG_06565 [Haemophilus influenzae PittGG] Length = 183 Score = 138 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 38/182 (20%), Positives = 73/182 (40%), Gaps = 8/182 (4%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 + + L +A PTE V+GL + ++ +A+++L ++K+RP LI + + Sbjct: 4 EQIADALRQNQVVAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRP 63 Query: 73 HAS---VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLI 128 ++ L + + P T ++ STT T + R K L Sbjct: 64 FVDFEQINDEQLSRLQGKYERPTTWIVPAKSTT--PHFLTGKFDSIAVRLCDHPSVKALC 121 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E G L SAN +G+ + S + P ++D + + S I +++ + Sbjct: 122 EITGFALTSTSANLTGEPPCRIADEV-RSQFGADFP-VLDEMVGRAHNPSEIRDLRTNQL 179 Query: 189 VR 190 R Sbjct: 180 FR 181 >gi|256072137|ref|XP_002572393.1| hypothetical protein [Schistosoma mansoni] gi|238657551|emb|CAZ28624.1| expressed protein [Schistosoma mansoni] Length = 287 Score = 138 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 61/229 (26%), Positives = 93/229 (40%), Gaps = 49/229 (21%) Query: 2 QIMSITDSNA-LRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 +I+++ D++ L + + +A+PT+T+YGLA N AI R+ IK R P Sbjct: 20 KIINVKDASLNLNAIVQLISQNDGVVALPTDTIYGLACSVFNTEAIERIRRIKGRSETKP 79 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA----NLKTA 115 + + +S + + L PGP+T++L S PLST K Sbjct: 80 MAICLDQVSHISHWCDTKNIPTGLLSDLLPGPVTVLLPRFSDRLQDPLSTRLLNLGDKRV 139 Query: 116 CFRVPC-GFTKKLIETY------------------------------GHPLAIPSANRSG 144 R+P GF +KLI GHPL + SAN SG Sbjct: 140 GIRIPDSGFIRKLISALNEQTRSSSIIGNNVEHSSGCDERDSISISGGHPLVLTSANLSG 199 Query: 145 QISITNVKHILSSSICKEIPLIIDGGISKIGL----------ESTIVNV 183 Q S ++ S I I LII+GG + + STI+++ Sbjct: 200 QPSAIQIEE--FSEIWSSIDLIINGGPIQSDIFSGNSDCSRAGSTIIDL 246 >gi|194367364|ref|YP_002029974.1| SUA5/yciO/yrdC domain [Stenotrophomonas maltophilia R551-3] gi|194350168|gb|ACF53291.1| SUA5/yciO/yrdC domain [Stenotrophomonas maltophilia R551-3] Length = 196 Score = 138 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 40/184 (21%), Positives = 70/184 (38%), Gaps = 7/184 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L A L AG IA PTE V+GL D + A+ + +K+RP +I ++++ ++ Sbjct: 16 LDSAVASLRAGGVIAYPTEAVWGLGCDPSHEAAVHMVLRLKQRPIEKGMILVAAELAQLE 75 Query: 72 KHAS---VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + WPG T +L + T R+ L Sbjct: 76 GWVRLQALPDARQRAVLASWPGANTWILPAGPRAQL--WITGEHSGIAVRISAHPLVAAL 133 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +G PL SAN +G+ + + L + + + I+DG + + I + Sbjct: 134 CRAWGGPLVSTSANLAGEPPARS-REELDPRLLRLLDGILDGETGGLAQPTPIRDALSGN 192 Query: 188 KVRI 191 +R Sbjct: 193 VLRS 196 >gi|212288271|sp|Q0I1B6|RIMN_HAES1 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN Length = 183 Score = 138 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 40/183 (21%), Positives = 69/183 (37%), Gaps = 8/183 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + E L +A PTE V+GL + + +A+ +L +K+RP LI + Sbjct: 3 ITQIIEKLKQNEVVAYPTEAVFGLGCNPFSQSAVEKLLILKQRPREKGLILVAPKLDYFF 62 Query: 72 KHAS---VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-L 127 ++ + +P P+T ++ + DI N + RV K L Sbjct: 63 SFIDKEQINSQHWQKLQQTYPRPITWIVP--AKKDIAKFLCGNFNSIAIRVSQHPAIKIL 120 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 E G L SAN SG + + P ++D + S I ++ + Sbjct: 121 CEQTGFALTSTSANLSGIAPCKTSDEV-RLQFGADFP-VLDMSVGSAAKPSEIRDLFTNQ 178 Query: 188 KVR 190 VR Sbjct: 179 LVR 181 >gi|118089557|ref|XP_426272.2| PREDICTED: similar to putative transmembrane protein TA-2 [Gallus gallus] Length = 818 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 42/207 (20%), Positives = 87/207 (42%), Gaps = 11/207 (5%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++++++ + L G IPT+TVY L P A+ + + K++ P+ +S + Sbjct: 555 ASSVKRIADILKNGGTCGIPTDTVYVLVAACNRPDAVEKAHRSKRQAQERPMSLWISSLK 614 Query: 69 MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDI-----HPLSTANLKTACFRVP-C 121 ++ PL WP P++LV+ D ++ R+P C Sbjct: 615 QLEPAKHLFSPLLWDFMDAAWPSPISLVIPRGEWVDFLGMKDSAKYVGTPQSVAIRIPDC 674 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 T LI+ G P+ + SAN +G+ T+ + + + ++ ++ G S + ST+V Sbjct: 675 SVTTHLIDLVG-PIVVTSANPTGEADTTHHNQVY-AKLGDKVDAVLCDGPSPENIASTVV 732 Query: 182 NVQ--CEKKVRILRPGGLEIETLKRAI 206 + + R G + + + + Sbjct: 733 DCTKIDSGNIGFFRVGIIPKSQVLQIL 759 >gi|309751744|gb|ADO81728.1| tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein [Haemophilus influenzae R2866] Length = 183 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 38/182 (20%), Positives = 71/182 (39%), Gaps = 8/182 (4%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 + E L +A PTE V+GL + ++ +A+++L ++K+RP LI + + Sbjct: 4 EQIAEALRQNQVVAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRP 63 Query: 73 HAS---VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLI 128 ++ L + + P T ++ STT T + R K L Sbjct: 64 FVDFELINDEQLSRLQGKYERPTTWIVPAKSTT--PYFLTGKFDSIAVRLCDHSSVKALC 121 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E G L SAN +G+ + + P ++D + S I +++ + Sbjct: 122 ELVGFALTSTSANLTGEPPCRTADEV-RLQFGADFP-VLDEIVGDARNPSEIRDLRTNQL 179 Query: 189 VR 190 R Sbjct: 180 FR 181 >gi|224098292|ref|XP_002195404.1| PREDICTED: hypothetical protein [Taeniopygia guttata] Length = 865 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 43/207 (20%), Positives = 89/207 (42%), Gaps = 11/207 (5%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++++++ + L G IPT+TVY L P A+ + + K++ P+ +S + Sbjct: 606 ASSVKRIADILRNGGTCGIPTDTVYVLVAACSRPDAVEKAHRSKRQAQDRPMSLWISSLK 665 Query: 69 MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDI-----HPLSTANLKTACFRVP-C 121 ++ PL + WP P++LV+ D ++ R+P C Sbjct: 666 QLEPAKHLFTPLLWDFMEAAWPSPISLVIPRGEWVDFLGMKDSAKYVGTPQSVAIRIPDC 725 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 T LI+ G P+ + SAN +G+ T+ + + + ++ ++ GG S + ST+V Sbjct: 726 SVTTHLIDLVG-PIVVTSANPTGEADTTHHNQVY-AKLGDKVDAVLCGGPSPENIASTVV 783 Query: 182 NVQ--CEKKVRILRPGGLEIETLKRAI 206 + + R G + + + + Sbjct: 784 DCTKIDSGNIGFFRVGIIPKSQVLQIL 810 >gi|170718186|ref|YP_001785212.1| SUA5/yciO/yrdC domain-containing protein [Haemophilus somnus 2336] gi|212288206|sp|B0UWV9|RIMN_HAES2 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|168826315|gb|ACA31686.1| SUA5/yciO/yrdC domain [Haemophilus somnus 2336] Length = 183 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 40/183 (21%), Positives = 69/183 (37%), Gaps = 8/183 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + E L +A PTE V+GL + + +A+ +L +K+RP LI + Sbjct: 3 ITQIIEKLKQNEVVAYPTEAVFGLGCNPFSQSAVEKLLILKQRPREKGLILVAPKLDYFF 62 Query: 72 KHAS---VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-L 127 ++ + +P P+T ++ + DI N + RV K L Sbjct: 63 SFIDKEQINSQHWQKLQQTYPRPITWIVP--AKKDIAKFLCGNFNSIAIRVSQHPAIKIL 120 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 E G L SAN SG + + P ++D + S I ++ + Sbjct: 121 CEQTGFALTSTSANLSGIAPCKTSDEV-RLQFGADFP-VLDMSVGSATKPSEIRDLFTNQ 178 Query: 188 KVR 190 VR Sbjct: 179 LVR 181 >gi|86158876|ref|YP_465661.1| translation factor SUA5 [Anaeromyxobacter dehalogenans 2CP-C] gi|85775387|gb|ABC82224.1| translation factor SUA5 [Anaeromyxobacter dehalogenans 2CP-C] Length = 212 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 62/187 (33%), Positives = 90/187 (48%), Gaps = 5/187 (2%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81 G + PTET YGL + + A+ RL K RP PL +D V + AS++ + Sbjct: 19 GGIVVYPTETFYGLGALASDGAALARLAAAKLRPEGKPLPLVAADREQVDRVASLEGAAA 78 Query: 82 HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSA 140 LA WPGPLTLVL + TA T R+P + L G L SA Sbjct: 79 RLAGRLWPGPLTLVLPARPG--LSEAITAGSGTVGVRIPGSEVARALARMAGGALVSTSA 136 Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200 N SG V L +++ + ++D G + GL ST+V V E+ +R++RPG + IE Sbjct: 137 NLSGGPPPDRV-EALDAALRAAVDHVLDAGPTPGGLPSTVVAVAGEE-LRVVRPGAVSIE 194 Query: 201 TLKRAIS 207 + A++ Sbjct: 195 QVTAALA 201 >gi|294786662|ref|ZP_06751916.1| Sua5/YciO/YrdC/YwlC family protein [Parascardovia denticolens F0305] gi|294485495|gb|EFG33129.1| Sua5/YciO/YrdC/YwlC family protein [Parascardovia denticolens F0305] Length = 291 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 54/222 (24%), Positives = 94/222 (42%), Gaps = 16/222 (7%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 + L AG + IPT+TVYG+ D R+ + R++E K RP + +D +K Sbjct: 28 EVKNLLSAGHVVVIPTDTVYGIIADPRSQVGVGRIFEAKSRPRTKSVQILCADAPQAQKL 87 Query: 74 ASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA-NLKTACFRVPCGFTKKLIETY 131 + P + L F G + LV + + ++ R P G + I + Sbjct: 88 GLIFPQIYQDLLAEFPKGAVCLVCPVKDDCQLVTTRQEKGYRSQAVRFPAGRQARAIIDF 147 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN--------- 182 P+A SANRSG S T V+ ++ + +PL +DGG + + ST+++ Sbjct: 148 VGPVAASSANRSGDKSATTVQEAIAE-LGGSVPLYLDGGATSGPVASTVISLDPASMAQA 206 Query: 183 VQCEKK----VRILRPGGLEIETLKRAISVELEYCVDETSTP 220 + E+ +++LR G + +L + E P Sbjct: 207 LSGEEPLNPQLKVLRRGVVPESSLNAWALSRVRGLGGENRLP 248 >gi|28199639|ref|NP_779953.1| hypothetical protein PD1768 [Xylella fastidiosa Temecula1] gi|81438360|sp|Q87AQ5|RIMN_XYLFT RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|212288258|sp|B2I8S9|RIMN_XYLF2 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|28057754|gb|AAO29602.1| conserved hypothetical protein [Xylella fastidiosa Temecula1] Length = 187 Score = 137 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 50/184 (27%), Positives = 80/184 (43%), Gaps = 7/184 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +A L G IA PTE V+GL D R TA+ L IK+R + LI ++++ ++ Sbjct: 7 LSEAVTALQQGDVIAYPTEAVWGLGCDPRQETAVHTLLNIKQRASGKGLILVTAELNTLQ 66 Query: 72 KHASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 +D P LH + WPGP T VL ++T T + R+ L Sbjct: 67 DWLDLDTLSPERLHEVQASWPGPHTWVLP--ASTRAPHWITGHHNGLAVRISAHPLVSAL 124 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + L SAN +GQ + L S+ + I+DG + ++I + + Sbjct: 125 CRAWNMALISTSANVAGQPPARR-REDLDPSLLPHLAGIVDGPTGGLAQPTSIRDARSGH 183 Query: 188 KVRI 191 +R+ Sbjct: 184 ILRL 187 >gi|299531543|ref|ZP_07044949.1| Sua5/YciO/YrdC/YwlC family protein [Comamonas testosteroni S44] gi|298720506|gb|EFI61457.1| Sua5/YciO/YrdC/YwlC family protein [Comamonas testosteroni S44] Length = 214 Score = 137 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 83/198 (41%), Gaps = 6/198 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A + L G +A+PT++ Y L + A+ R+ I++ + L D+S Sbjct: 14 PRIIKQAADMLRKGAILAVPTDSSYALVCHLDDKNAVDRMRRIRQINDKHHLTLLCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127 + +A VD L KL PGP T +L+ LS + KT RVP + L Sbjct: 74 ELANYARVDNRQYRLLKLATPGPYTFILEASKEVP-KRLSHPSRKTIGLRVPDRKGLQLL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ--- 184 +E G PL + G+ N + E+ ++D G +T++++ Sbjct: 133 LEELGEPLLATTLIAPGETEPLNDAESILERFPHELDAVVDSGACPQ-QPTTVLDLTPMA 191 Query: 185 CEKKVRILRPGGLEIETL 202 ++R G ++ + Sbjct: 192 LNNPPVVVRQGMGGLKDI 209 >gi|283768245|ref|ZP_06341158.1| Sua5/YciO/YrdC/YwlC family protein [Bulleidia extructa W1219] gi|283105122|gb|EFC06493.1| Sua5/YciO/YrdC/YwlC family protein [Bulleidia extructa W1219] Length = 200 Score = 137 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 46/208 (22%), Positives = 88/208 (42%), Gaps = 18/208 (8%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I ++ N L + L +A+PT+TV+G+ + A L ++KKRP Sbjct: 1 MLICQNSEINVL---VDLLRKDEVVAVPTDTVFGVCARYDHIQAQENLRDLKKRPETKAF 57 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV- 119 +D+ V + + + F PGPLT++L + T R+ Sbjct: 58 PIMCADMEQVLQICEMCEEEKRVMNQFMPGPLTMIL--KKKKGVPSFVNGGKDTIAIRLA 115 Query: 120 PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHI--LSSSICKEIPLIIDGGISKIGLE 177 ++I G P+ + SAN SG+ + V+ + + +++ ++ + Sbjct: 116 TSPILAEMIGKLGVPVYMTSANVSGEPAALTVEDVPGVKAALAGKV---------EFAQA 166 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRA 205 STIV E ++LR G + ++ ++ A Sbjct: 167 STIV-FYGEAGWKVLRQGPILLQQIQEA 193 >gi|71898888|ref|ZP_00681055.1| SUA5/yciO/yrdC, N-terminal [Xylella fastidiosa Ann-1] gi|71731300|gb|EAO33364.1| SUA5/yciO/yrdC, N-terminal [Xylella fastidiosa Ann-1] Length = 209 Score = 137 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 51/184 (27%), Positives = 81/184 (44%), Gaps = 7/184 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L +A L G IA PTE V+GL D R TA+ L IK+R + LI ++++ ++ Sbjct: 29 LSEAVTALQQGGVIAYPTEAVWGLGCDPRQETAVHTLLNIKQRASGKGLILVTAELNTLQ 88 Query: 72 KHASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 ++D P LH + WPGP T VL ++T T + R+ L Sbjct: 89 DWLNLDTLSPERLHEVQASWPGPHTWVLP--ASTRAPHWITGHHNGLAVRISAHPLVSAL 146 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + L SAN +GQ S + L S+ + I+DG + + I + + Sbjct: 147 CRAWNMALISTSANVAGQ-SPARRREDLDPSLLPHLAGIVDGPTGGLAQPTPIRDARSGH 205 Query: 188 KVRI 191 +R+ Sbjct: 206 ILRL 209 >gi|17537239|ref|NP_496826.1| hypothetical protein Y48C3A.18 [Caenorhabditis elegans] Length = 244 Score = 137 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 64/210 (30%), Positives = 100/210 (47%), Gaps = 14/210 (6%) Query: 2 QIMSITD---SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58 +I+ +T A+ A G +A+PT+T+YG++ + RLY +K+RP Sbjct: 6 RILRLTADNIEEAIDAAVCVFLRGGIVALPTDTLYGISTLLQYSD---RLYALKQRPYEK 62 Query: 59 PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 PL + + + K S +S LA PGP+TL+ + L + + R Sbjct: 63 PLGIFLPSPTAM-KLVSRQTISDELANCLLPGPVTLMFERLPC--LPAEFNPGVVNVACR 119 Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSG-QISITNVKHILSSSICKEIPLIIDGG-ISKIG 175 VP C + + G PLA SAN SG ++ T++ H + I LI+D G I G Sbjct: 120 VPDCPIVSTICKKLGQPLAQTSANVSGSSLNPTSIDH--FRDLHPNIDLILDAGSIISSG 177 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRA 205 STIV++ E RI+R G E ET+++ Sbjct: 178 EGSTIVDLTVESGFRIVRSGCAEKETMQKL 207 >gi|289627012|ref|ZP_06459966.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] Length = 162 Score = 137 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 43/165 (26%), Positives = 67/165 (40%), Gaps = 4/165 (2%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + S +++A + + AG IA PTE V+GL D + A+ RL IK RP LI Sbjct: 1 MVSSWRVQQAAQDIRAGAVIAYPTEAVWGLGCDPWDEEAVYRLLAIKSRPVEKGLILIAD 60 Query: 66 DISMVK-KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 +I L L WPGP T ++ + T +T RV T Sbjct: 61 NIRQFDFLFEDFPQLWLDRMASTWPGPNTWLVPHQ--NLLPEWITGIHETVALRVTDHPT 118 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169 + + PL SAN +G+ + + + +I ++ G Sbjct: 119 VRELCALVGPLISTSANPAGRPAARSRLRV-EQYFRGQIDGVLGG 162 >gi|264676972|ref|YP_003276878.1| Sua5/YciO/YrdC/YwlC family protein [Comamonas testosteroni CNB-2] gi|262207484|gb|ACY31582.1| Sua5/YciO/YrdC/YwlC family protein [Comamonas testosteroni CNB-2] Length = 214 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 83/198 (41%), Gaps = 6/198 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A + L G +A+PT++ Y L + A+ R+ I++ + L D+S Sbjct: 14 PRIIKQAADMLRKGAILAVPTDSSYALVCHLDDKNAVDRMRRIRQINDKHHLTLLCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127 + +A VD L KL PGP T +L+ LS + KT RVP + L Sbjct: 74 ELANYARVDNRQYRLLKLATPGPYTFILEASKEVP-KRLSHPSRKTIGLRVPDRKGLQLL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ--- 184 +E G PL + G+ N + E+ ++D G +T++++ Sbjct: 133 LEELGEPLLATTLIAPGETEPLNDAESILERFPHELDAVVDSGACPQ-QPTTVLDLTPMA 191 Query: 185 CEKKVRILRPGGLEIETL 202 ++R G ++ + Sbjct: 192 LNNPPVVVRQGMGGLKDI 209 >gi|145635688|ref|ZP_01791384.1| hypothetical protein CGSHiAA_01574 [Haemophilus influenzae PittAA] gi|145267083|gb|EDK07091.1| hypothetical protein CGSHiAA_01574 [Haemophilus influenzae PittAA] Length = 183 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 38/182 (20%), Positives = 72/182 (39%), Gaps = 8/182 (4%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 + + L +A PTE V+GL + ++ +A+++L ++K+RP LI + + Sbjct: 4 EQIADALRQNQVVAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRP 63 Query: 73 HAS---VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLI 128 ++ L + + P T ++ STT T + R K L Sbjct: 64 FVDFEQINDEQLSRLQGKYERPTTWIVPAKSTT--PHFLTGKFDSIAIRLCDHPSVKALC 121 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E G L SAN +G+ + S + P ++D + S I +++ + Sbjct: 122 EITGFALTSTSANLTGEPPCRTTDEV-RSQFGADFP-VLDEIVGGALNPSEIRDLRTNQL 179 Query: 189 VR 190 R Sbjct: 180 FR 181 >gi|221068835|ref|ZP_03544940.1| Sua5/YciO/YrdC/YwlC family protein [Comamonas testosteroni KF-1] gi|220713858|gb|EED69226.1| Sua5/YciO/YrdC/YwlC family protein [Comamonas testosteroni KF-1] Length = 214 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 83/198 (41%), Gaps = 6/198 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E L G +A+PT++ Y L + A+ R+ I++ + L D+S Sbjct: 14 PRIIKQAAEMLRKGAILAVPTDSSYALVCHLDDKNAVDRMRRIRQINDKHHLTLLCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127 + +A VD L KL PGP T +L+ LS + KT RVP + L Sbjct: 74 ELANYARVDNRQYRLLKLATPGPYTFILEASKEVP-KRLSHPSRKTIGLRVPDRKGLQLL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ--- 184 +E G PL + G+ N + E+ ++D G +T++++ Sbjct: 133 LEELGEPLLATTLIAPGETEPLNDADSILERFPHELDAVVDSGACPQ-QPTTVLDLTPMA 191 Query: 185 CEKKVRILRPGGLEIETL 202 ++R G ++ + Sbjct: 192 LNNSPVVVRQGMGSLKDI 209 >gi|327290899|ref|XP_003230159.1| PREDICTED: hypothetical protein LOC100563185 [Anolis carolinensis] Length = 874 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 43/206 (20%), Positives = 88/206 (42%), Gaps = 11/206 (5%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++++++ E + G IPT+TVY LA P A+ + Y K++ P+ +S + Sbjct: 614 ASSVKQVAEIMKQGGACGIPTDTVYVLAAACNRPDAVEKAYNTKRQAEDRPMSLWISSLK 673 Query: 69 MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-----TANLKTACFRVP-C 121 ++ P+ + W P++LV+ D L ++ R+P C Sbjct: 674 QLEPVKRLFSPILWDFMEAAWASPISLVIPRGEWLDYLGLKDSAKYVGTPQSIAIRIPDC 733 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 T LI+ G P+ + SAN +G+ T+ + + + ++ ++ G S + ST+V Sbjct: 734 SVTTHLIDLVG-PITVTSANPTGEADTTHHNQVF-AKLGNKVDAVLCAGPSPENIASTVV 791 Query: 182 NVQC--EKKVRILRPGGLEIETLKRA 205 + + R G + + + Sbjct: 792 DCTKIESGNIGFFRVGIVPKTQVLQI 817 >gi|225012714|ref|ZP_03703149.1| Sua5/YciO/YrdC/YwlC family protein [Flavobacteria bacterium MS024-2A] gi|225003247|gb|EEG41222.1| Sua5/YciO/YrdC/YwlC family protein [Flavobacteria bacterium MS024-2A] Length = 182 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 43/184 (23%), Positives = 82/184 (44%), Gaps = 6/184 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + L+ I PT+TV+G+ D+ P + ++Y+IK+R LI V DI M+K Sbjct: 2 IDEVLAALEKKQTILYPTDTVWGIGGDATAPEVVEKIYKIKQRADHKALIVLVKDIEMLK 61 Query: 72 KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 ++ + ++ + P TLV ++ + R+P F ++L+ Sbjct: 62 EYVQEIPEVAFSFLEE--ERPTTLVYPQ--GINLADNLLGQDGSVGIRIPKHSFCQQLLT 117 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 ++G P+ SAN SG + N I S + ++ + S ++ ++ + V Sbjct: 118 SFGKPIISTSANISGSETPKNFNTIDSKVLEGVDYVVHLQKKNNQNQPSRVLKIKADGTV 177 Query: 190 RILR 193 ILR Sbjct: 178 LILR 181 >gi|68249235|ref|YP_248347.1| translation factor SUA5 [Haemophilus influenzae 86-028NP] gi|81336361|sp|Q4QMR0|RIMN_HAEI8 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|68057434|gb|AAX87687.1| predicted translation factor SUA5 [Haemophilus influenzae 86-028NP] Length = 183 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 70/182 (38%), Gaps = 8/182 (4%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 + E L +A PTE V+GL + ++ +A+++L ++K+RP LI + + Sbjct: 4 EQIAEALRQNQVVAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRP 63 Query: 73 HASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLI 128 + ++ + P T ++ STT T + R K L Sbjct: 64 FVDFEQINDEQLSHLQGKYERPTTWIVPAKSTT--SHFLTGKFDSIAIRLCDHPSVKALC 121 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E G L SAN +G+ + + P ++D + S I +++ + Sbjct: 122 ELTGFALTSTSANLTGEPPCRTADEV-RLQFGADFP-VLDEIVGDARNPSEIRDLRTNQL 179 Query: 189 VR 190 R Sbjct: 180 FR 181 >gi|145642211|ref|ZP_01797778.1| predicted translation factor SUA5 [Haemophilus influenzae R3021] gi|145273071|gb|EDK12950.1| predicted translation factor SUA5 [Haemophilus influenzae 22.4-21] Length = 183 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 39/182 (21%), Positives = 72/182 (39%), Gaps = 8/182 (4%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 + E L +A PTE V+GL + ++ +A+++L ++K+RP LI + + Sbjct: 4 EQIAEALRQNQVVAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRP 63 Query: 73 HAS---VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLI 128 ++ L + + P T ++ STT T + R K L Sbjct: 64 FVDFEQINDEQLSRLQGKYERPTTWIVPAKSTT--SHFLTGKFDSIAVRLCDHPSVKALC 121 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E G L SAN +G+ + S + P ++D + S I +++ + Sbjct: 122 ELTGFALTSTSANLTGEPPCRTADEV-RSQFSVDFP-VLDEIVGDARNPSEIRDLRTNQL 179 Query: 189 VR 190 R Sbjct: 180 FR 181 >gi|119898405|ref|YP_933618.1| hypothetical protein azo2114 [Azoarcus sp. BH72] gi|119670818|emb|CAL94731.1| conserved hypothetical protein [Azoarcus sp. BH72] Length = 210 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 41/195 (21%), Positives = 76/195 (38%), Gaps = 4/195 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +R+A E + G +A PT++ Y L + + + R+ I+ + D+S Sbjct: 14 PRLIRQAAEIIRGGGLVAFPTDSAYALGGHTGDAPLLERIRRIRGVDERHQFTLLCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD L K PG T +L+ + KT R+P L Sbjct: 74 EIATYARVDNSQYRLLKAVTPGAYTFILEGTRELP-RRVLHPKRKTIGLRIPEHAVVSAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + + + + K++ L+I+ G +T+V++ Sbjct: 133 LAELGEPLLSSTLLLPDEDLPLTDPEEIRDRLEKQVDLVIEAGFCGP-EATTVVDLTSGV 191 Query: 188 KVRILRPGGLEIETL 202 V ++R G E+ L Sbjct: 192 PV-LVRAGRGELAPL 205 >gi|229847438|ref|ZP_04467538.1| hypothetical protein CGSHi7P49H1_08654 [Haemophilus influenzae 7P49H1] gi|229809676|gb|EEP45402.1| hypothetical protein CGSHi7P49H1_08654 [Haemophilus influenzae 7P49H1] Length = 183 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 39/182 (21%), Positives = 72/182 (39%), Gaps = 8/182 (4%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 + E L +A PTE V+GL + ++ +A+++L ++K+RP LI + + Sbjct: 4 EQIAEALRQNQVVAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRP 63 Query: 73 HAS---VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLI 128 ++ L + + P T ++ STT T + R K L Sbjct: 64 FVDFEQINDEQLSRLQGKYERPTTWIVPAKSTT--PHFLTGKFDSIAIRLCDHPSVKALC 121 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E G L SAN +G+ + S + P ++D + S I +++ + Sbjct: 122 EITGFALTSTSANLTGEPPCRIADEV-RSQFGSDFP-VLDEIVGGALNPSEIRDLRTNQL 179 Query: 189 VR 190 R Sbjct: 180 FR 181 >gi|145629659|ref|ZP_01785456.1| fructose 1,6-bisphosphatase II [Haemophilus influenzae 22.1-21] gi|144978170|gb|EDJ87943.1| fructose 1,6-bisphosphatase II [Haemophilus influenzae 22.1-21] Length = 183 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 38/182 (20%), Positives = 71/182 (39%), Gaps = 8/182 (4%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 + E L +A PTE V+GL + ++ +A+++L ++K+RP LI + + Sbjct: 4 EQIAEALRQNQVVAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRP 63 Query: 73 HAS---VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLI 128 ++ L + + P T ++ STT T + R K L Sbjct: 64 FVDFELINDEQLSRLQGKYERPTTWIVPAKSTT--SHFLTGKFDSIAVRLCDHPSVKALC 121 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E G L SAN +G+ + + P ++D + S I +++ + Sbjct: 122 ELTGFTLTSTSANLTGEPPCRTADEV-RLQFGADFP-VLDEIVGDARNPSEIRDLRTNQL 179 Query: 189 VR 190 R Sbjct: 180 FR 181 >gi|238059036|ref|ZP_04603745.1| hypothetical protein MCAG_00002 [Micromonospora sp. ATCC 39149] gi|237880847|gb|EEP69675.1| hypothetical protein MCAG_00002 [Micromonospora sp. ATCC 39149] Length = 206 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 32/196 (16%), Positives = 65/196 (33%), Gaps = 4/196 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + + + IA PT++ + L N + R+ EI+ + D + Sbjct: 14 PRTIGQVADLIRRDGLIAYPTDSCFALGCRLGNKNGLDRIREIRHLDTGHHFTLVCHDFA 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + + K PG T +L L KT R+P + L Sbjct: 74 QLGQFVHLGNAVFRAVKAATPGSYTFILPATKEVP-RRLLHPKKKTVGVRIPAHTVAQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + G + + + ++D G +T+V+ + Sbjct: 133 LAELGEPLLSSTLLLPGDDEPMTQGWEIKERLDHVVDAVLDSGDCGT-EPTTVVDF-SDG 190 Query: 188 KVRILRPGGLEIETLK 203 + I+R G + + Sbjct: 191 EPEIVRVGAGDPSRFE 206 >gi|328948017|ref|YP_004365354.1| Sua5/YciO/YrdC/YwlC family protein [Treponema succinifaciens DSM 2489] gi|328448341|gb|AEB14057.1| Sua5/YciO/YrdC/YwlC family protein [Treponema succinifaciens DSM 2489] Length = 193 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 56/198 (28%), Positives = 89/198 (44%), Gaps = 20/198 (10%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNP-------TAIRRLYEIKKRPAMNPL 60 + + R A +FL G +PT+TVYG + + N A ++ +IK R P Sbjct: 6 NEESARIAADFLKCGKICVLPTDTVYGFSGIAENSLQAKFGTDA--KIRKIKGREEKKPF 63 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 I VS + K++ + LA+ WPG LT+++ L + T FR P Sbjct: 64 IQLVSSPDEISKYSDF-KIPEQLAQK-WPGALTVIVPLKFP------FSEKNATVAFRCP 115 Query: 121 CGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + +I G P+ S NRSG + +V + E+ LI+D G K L ST Sbjct: 116 GDLWLRNVIAECGFPIYSTSVNRSGSPVLDSVCK-IEKEFSNEVDLIVDDGDKKGSLPST 174 Query: 180 IVNVQCEKKVRILRPGGL 197 IV ++ + ++LR G + Sbjct: 175 IVLLKNDG-WKVLRQGSV 191 >gi|24212721|ref|NP_710202.1| putative translation factor Sua5 [Leptospira interrogans serovar Lai str. 56601] gi|45655934|ref|YP_000020.1| hypothetical protein LIC10020 [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24193354|gb|AAN47220.1| putative translation factor Sua5 [Leptospira interrogans serovar Lai str. 56601] gi|45599167|gb|AAS68657.1| conserved hypothetical protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 202 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 48/190 (25%), Positives = 82/190 (43%), Gaps = 6/190 (3%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 + L++ + L G PT+TVY L DS++ + +LYE+K PL I Sbjct: 11 EKRKLQQISDQLSQGKIYIFPTDTVYALLADSQSKLGVEKLYELKNISKNQPLSLICPSI 70 Query: 68 SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TK 125 S+ + + + L K PGP T + S K R+P + Sbjct: 71 SIASNYIEHLSNDAFRLMKKITPGPFTFITSANKHLPRVSFSNQKEKQIGIRIPDAIYLQ 130 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +L++ + +PL S + + I L + I+DGGI K+ L STI+++ Sbjct: 131 ELMKIHPNPLTSTSVFANDEFIIEVDS--LEKIYGSRVEGIVDGGILKVEL-STILDLTG 187 Query: 186 EKKVRILRPG 195 ++ + I+R G Sbjct: 188 DE-ITIIREG 196 >gi|218885947|ref|YP_002435268.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756901|gb|ACL07800.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 218 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 51/203 (25%), Positives = 88/203 (43%), Gaps = 11/203 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L A L AG + PTET +G+ + + A+ +Y +K+R L V + + Sbjct: 13 LDDAAALLRAGRVVVFPTETFFGVGCLATHAGAVDEVYRVKRRAHRLALPVIVGHVDQLT 72 Query: 72 KHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLIE 129 + A+ + ++ LA+ FWPGPL+++L T R P ++L Sbjct: 73 QVAAPMGHVAEGLARRFWPGPLSILLPAAPGVPEP--LTGGTGRVAVRLTPHPAARELCL 130 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK-- 187 G PL SAN SG+ ++T + + + ++ GL ST+V V Sbjct: 131 RAGGPLVASSANISGRPAVTRAMDLDPELLAEVAGVLDLPPAPPGGLPSTLVEVLDGGCI 190 Query: 188 -----KVRILRPGGLEIETLKRA 205 ++R+LR G + ++ L A Sbjct: 191 GDGAPRLRVLRAGAVSVQALSDA 213 >gi|302539809|ref|ZP_07292151.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces hygroscopicus ATCC 53653] gi|302457427|gb|EFL20520.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces himastatinicus ATCC 53653] Length = 206 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 34/189 (17%), Positives = 68/189 (35%), Gaps = 4/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + + + +G +A PT++ + L N I R+ I+ + D S Sbjct: 14 ARTISNVADRIRSGALVAYPTDSCFALGCQMGNRDGISRIRSIRNLDDRHHFTLVCQDFS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + +D K PG T +L L KT R+P T+ L Sbjct: 74 QLGQFVHIDKDVFRAIKASTPGSYTFILPATKDVP-RALPHPKKKTVGVRIPDHTVTQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + G+ + + + ++D G +T+++ + Sbjct: 133 LAEIGEPLLSSTLLLPGEDEPMTQGWEIKERLDHVVDAVVDSGDCGT-EPTTVIDF-SDG 190 Query: 188 KVRILRPGG 196 + +I+R G Sbjct: 191 EAQIVRRGA 199 >gi|307324891|ref|ZP_07604096.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces violaceusniger Tu 4113] gi|306889389|gb|EFN20370.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces violaceusniger Tu 4113] Length = 206 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 32/190 (16%), Positives = 68/190 (35%), Gaps = 6/190 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + + +G +A PT++ + L N I ++ I+K + + + Sbjct: 14 QRTISNVADRIRSGGLVAYPTDSCFALGCQMGNRDGINQIRSIRKLDDRHHFTLMCQNFA 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCGFT-KK 126 + + +D K PG T +L +T D+ L KT R+P + Sbjct: 74 QLGQFVHIDKDVFRAIKAATPGSYTFILP--ATKDVPRQLPHPKKKTVGVRIPDHVVTQA 131 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L+ G PL + + + + + ++D G +T+++ Sbjct: 132 LLAELGEPLLSSTLLLPDEDEPMTQGWEIKERLDHVVDAVVDSGDCGT-EPTTVIDFSS- 189 Query: 187 KKVRILRPGG 196 + I+R G Sbjct: 190 GEAEIVRRGA 199 >gi|167948397|ref|ZP_02535471.1| translation factor [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 163 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 43/139 (30%), Positives = 56/139 (40%), Gaps = 4/139 (2%) Query: 18 FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77 + G +A PTE+V+GL D NP A+ RL +K+RP LI SD + ++ Sbjct: 1 MILGGGILAYPTESVFGLGCDPLNPQAVFRLLRLKQRPVSKGLILIASDFNQLQPFIDQL 60 Query: 78 P-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPL 135 P L WPGP T VL T + + RV L G PL Sbjct: 61 PSQQLEPVIQSWPGPHTWVLPAAPT--LPFWLRGDHSGIAVRVTNHPLAAALCRASGRPL 118 Query: 136 AIPSANRSGQISITNVKHI 154 SANRS N + Sbjct: 119 VSTSANRSNHPPARNALQV 137 >gi|330468832|ref|YP_004406575.1| translation factor SUA5 [Verrucosispora maris AB-18-032] gi|328811803|gb|AEB45975.1| translation factor SUA5 [Verrucosispora maris AB-18-032] Length = 206 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 69/193 (35%), Gaps = 4/193 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + + L IA PT++ + L N + R+ EI+ + + D + Sbjct: 14 PRIIGQVVDLLRRDGLIAYPTDSCFALGSQLGNKDGMDRIREIRHLDSGHHFTLVCRDFA 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + +D K PG T +L L +T R+P T+ L Sbjct: 74 QLGQFVQLDNAVFRAVKAATPGQYTFILPATKEVP-RRLLHPRKRTVGVRIPDHPVTRAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ G PL + G + + + ++D G +T+V+ E Sbjct: 133 LDELGEPLLSSTLLLPGDDEPLTQGWEIKERLDHAVDAVVDAGDCGT-EPTTVVDF-SEG 190 Query: 188 KVRILRPGGLEIE 200 + I+R G + E Sbjct: 191 EPEIVRVGAGDPE 203 >gi|254362317|ref|ZP_04978429.1| possible translation factor [Mannheimia haemolytica PHL213] gi|261493259|ref|ZP_05989786.1| putative translation factor [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496498|ref|ZP_05992878.1| putative translation factor [Mannheimia haemolytica serotype A2 str. OVINE] gi|153093897|gb|EDN74825.1| possible translation factor [Mannheimia haemolytica PHL213] gi|261307701|gb|EEY09024.1| putative translation factor [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311109|gb|EEY12285.1| putative translation factor [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 184 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 40/183 (21%), Positives = 74/183 (40%), Gaps = 12/183 (6%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 + L +A PTE V+GL + ++ A+R+L +K+RP LI SD+ + + Sbjct: 6 EIVNQLKQEEVVAYPTEAVFGLGCNPQSEKAVRKLLVLKQRPEEKGLILLASDLKYLLPY 65 Query: 74 ---ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR---VPCGFTKKL 127 A + + +T ++ + +T + T + R VP +L Sbjct: 66 IDEARMTEQAWQRLSHIGEQAITWIVPVKNT--VPSYLTGKFDSIAVRLCNVPA--VVQL 121 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 E G L SAN SG+ N K ++ ++ P ++ S I ++ ++ Sbjct: 122 CEASGVALTSTSANLSGEPPCRNAKEVI-DQFGQDFP-VLHADTLGRENPSEIRDIFSQQ 179 Query: 188 KVR 190 R Sbjct: 180 IFR 182 >gi|114777136|ref|ZP_01452156.1| Sua5/YciO/YrdC/YwlC [Mariprofundus ferrooxydans PV-1] gi|114552657|gb|EAU55117.1| Sua5/YciO/YrdC/YwlC [Mariprofundus ferrooxydans PV-1] Length = 205 Score = 136 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 38/191 (19%), Positives = 77/191 (40%), Gaps = 5/191 (2%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +R+A + L GL +A+PT+T Y L A+ + ++++ + +D+SM Sbjct: 17 RQVRRAADLLRQGLFVAVPTDTTYALMCRPDATDAVAAIRQLRRLDDSHLWAVACADLSM 76 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 +D + + K PGP T +L ++ + + R+P + L+ Sbjct: 77 ASACVRMDNHAHRILKRCLPGPYTFILP--ASAALPRRIFGKRRDVGIRMPDHPVCRMLL 134 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E G L + G+ + ++D G I + ST+V++ C+ + Sbjct: 135 EECGEVLLATTLLLPGEDEPAFDPDEFVPQLKHFSCAVLDAGWGGI-VPSTVVDL-CDGE 192 Query: 189 VRILRPGGLEI 199 + R G + Sbjct: 193 PVLWRDGAGDW 203 >gi|224823451|ref|ZP_03696560.1| SUA5/yciO/yrdC domain protein [Lutiella nitroferrum 2002] gi|224603906|gb|EEG10080.1| SUA5/yciO/yrdC domain protein [Lutiella nitroferrum 2002] Length = 171 Score = 136 bits (344), Expect = 4e-30, Method: Composition-based stats. Identities = 46/175 (26%), Positives = 71/175 (40%), Gaps = 6/175 (3%) Query: 18 FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77 L G +A TE+ +GL D N AIRR+ +K RP LI + ++ V+ Sbjct: 1 MLQQGGVLAYSTESCFGLGCDPFNVAAIRRVLALKARPNHKGLIVIAASLAQVRPLIRPL 60 Query: 78 PLSLHL-AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPL 135 + +WPGP T +L ++ + PL RV L G L Sbjct: 61 SAAEEAELARYWPGPYTFLLP--ASPRVPPLLRGRHDKIAVRVTAHGEAAALCRALGTAL 118 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 SANR+GQ S+ + + L + G I STI++ + + +R Sbjct: 119 VSTSANRAGQTSLKTAQACRRAF--GAAVLTLPGRIGGSRRPSTIIDFETGRVLR 171 >gi|297665439|ref|XP_002811084.1| PREDICTED: yrdC domain-containing protein, mitochondrial-like [Pongo abelii] Length = 350 Score = 136 bits (344), Expect = 4e-30, Method: Composition-based stats. Identities = 61/195 (31%), Positives = 97/195 (49%), Gaps = 12/195 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ALR A L AG +A+PT+T+YGLA + A+R +Y +K R PL + ++ Sbjct: 138 TEALRAAVAELRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVA 197 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 V ++ V + L K PGP+TLV++ + +++ R+P F + L Sbjct: 198 DVYRYCRVR-VPEGLLKDLLPGPVTLVMER--SEELNKDLNPFTPLVGIRIPDHAFMQDL 254 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE------STIV 181 + + PLA+ SAN S Q S NV+ + ++ L+IDGG G ST+V Sbjct: 255 AQMFEGPLALTSANLSSQASSLNVEE--FQDLWPQLSLVIDGGQIGDGQSPECRLGSTVV 312 Query: 182 NVQCEKKVRILRPGG 196 ++ K I+RPG Sbjct: 313 DLSVPGKFGIIRPGC 327 >gi|152978022|ref|YP_001343651.1| SUA5/yciO/yrdC domain-containing protein [Actinobacillus succinogenes 130Z] gi|212277664|sp|A6VL69|RIMN_ACTSZ RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|150839745|gb|ABR73716.1| SUA5/yciO/yrdC domain [Actinobacillus succinogenes 130Z] Length = 183 Score = 136 bits (344), Expect = 4e-30, Method: Composition-based stats. Identities = 38/182 (20%), Positives = 70/182 (38%), Gaps = 8/182 (4%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 + E L +A PTE V+GL + + +A+++L ++K+RP LI D+ + Sbjct: 5 EIAEKLKQNQVVAYPTEAVFGLGCNPLSESAVKKLLDLKQRPIDKGLILIAPDLLYLLPF 64 Query: 74 ASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIE 129 + L+ + P+T V+ + T T + R+ +L Sbjct: 65 IDTERLNSRQISRLTANYSHPVTWVVPVKFGT--PKFLTGRFNSIAVRISDHPAVAELCS 122 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G L SAN SG + S + ++D + S I N+ ++ + Sbjct: 123 LTGFALTSTSANLSGLPPCKTAAEVRSQF--GQFFPVLDYPVGHAEKPSEIRNLLTDQLI 180 Query: 190 RI 191 R Sbjct: 181 RE 182 >gi|16272599|ref|NP_438816.1| hypothetical protein HI0656 [Haemophilus influenzae Rd KW20] gi|260581367|ref|ZP_05849182.1| trigger factor [Haemophilus influenzae RdAW] gi|1176855|sp|P44807|RIMN_HAEIN RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|1573655|gb|AAC22315.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20] gi|260091962|gb|EEW75910.1| trigger factor [Haemophilus influenzae RdAW] Length = 183 Score = 136 bits (344), Expect = 4e-30, Method: Composition-based stats. Identities = 36/182 (19%), Positives = 72/182 (39%), Gaps = 8/182 (4%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 + + L +A PTE V+GL + ++ +A+++L ++K+RP LI + + Sbjct: 4 EQIADALRQNQVVAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRP 63 Query: 73 HAS---VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLI 128 ++ L + + P T ++ STT T + R K L Sbjct: 64 FVDFEQINDEQLSRLQGKYERPTTWIVPAKSTT--PHFLTGKFDSIAIRLCDHPSVKALC 121 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E G L SAN +G+ + + P +++ + + S I +++ + Sbjct: 122 ELTGFALTSTSANLTGEPPCRTADEV-RLQFGSDFP-VLNEMVGRAHNPSEIRDLRTNQL 179 Query: 189 VR 190 R Sbjct: 180 FR 181 >gi|328777852|ref|XP_001120082.2| PREDICTED: yrdC domain-containing protein, mitochondrial-like [Apis mellifera] Length = 270 Score = 136 bits (343), Expect = 5e-30, Method: Composition-based stats. Identities = 60/195 (30%), Positives = 87/195 (44%), Gaps = 12/195 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +L A L IAIPT+T+YGLA + ++I +LYEIKKR PL V++I+ Sbjct: 61 KRSLAVAITLLQQNEIIAIPTDTIYGLAGIVSSTSSIEKLYEIKKRDKDKPLSISVNNIN 120 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128 +KK VD L L L PGP+T+++ ++P N T R+P I Sbjct: 121 DIKKWGIVDHLPQDLLSLILPGPITIIVKRTPA--LNPALNPNHDTVGIRIPSFKFISYI 178 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG--------GISKIGLESTI 180 PLA+ SAN S + S ++ + I SK STI Sbjct: 179 SAITGPLALTSANLSNEKSCLYASE--FQNLWPMLGGIFYDSNNFGKSKSKSKSRKGSTI 236 Query: 181 VNVQCEKKVRILRPG 195 V++ +I+R G Sbjct: 237 VDLSKPGYYKIVRAG 251 >gi|89892405|gb|ABD78986.1| HI0656-like protein [Haemophilus influenzae] Length = 183 Score = 136 bits (343), Expect = 5e-30, Method: Composition-based stats. Identities = 38/182 (20%), Positives = 72/182 (39%), Gaps = 8/182 (4%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 + + L +A PTE V+GL + ++ +A+++L ++K+RP LI + + Sbjct: 4 EQIAKALRQNQVVAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRP 63 Query: 73 HAS---VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLI 128 ++ L + + P T ++ STT T + R K L Sbjct: 64 FVDFEQINDEQLSRLQGKYERPTTWIVPSKSTT--PHFLTGKFDSIAIRLCDHPSVKALC 121 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E G L SAN +G+ + S + P ++D + S I +++ + Sbjct: 122 ELTGFTLTSTSANLTGEPPCRTADEV-RSQFSVDFP-VLDEIVGGARNPSEIRDLRTNQL 179 Query: 189 VR 190 R Sbjct: 180 FR 181 >gi|5688851|dbj|BAA82702.1| Orf5 [Streptomyces coelicolor] Length = 200 Score = 136 bits (343), Expect = 5e-30, Method: Composition-based stats. Identities = 34/189 (17%), Positives = 67/189 (35%), Gaps = 4/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++ + + + +G IA PT++ Y L + I R+ I++ + D + Sbjct: 8 PRSIAQVADSVRSGALIAYPTDSCYALGCRLGSRDGIDRIRSIRQLDNRHHFTLVWQDFA 67 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + +D K PG T +L L KT R+P T+ L Sbjct: 68 QLGQFVQIDNDVFRAIKASTPGSYTFILPATREVP-RALQHPKKKTVGVRIPDHVVTQAL 126 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + + + + + ++D G +T+V+ Sbjct: 127 LAELGEPLLSSTLLLPDEEEPMTQGWEIKDRLDHVLDAVVDSGDCGT-EPTTVVDFSG-G 184 Query: 188 KVRILRPGG 196 + I+R G Sbjct: 185 EAEIVRHGA 193 >gi|325576777|ref|ZP_08147392.1| Sua5/YciO/YrdC/YwlC family protein [Haemophilus parainfluenzae ATCC 33392] gi|325160983|gb|EGC73101.1| Sua5/YciO/YrdC/YwlC family protein [Haemophilus parainfluenzae ATCC 33392] Length = 183 Score = 136 bits (343), Expect = 5e-30, Method: Composition-based stats. Identities = 39/183 (21%), Positives = 75/183 (40%), Gaps = 8/183 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++ L +A PTE V+GL + + +A+R+L ++K+RP LI ++ ++ Sbjct: 3 IQQIAACLMQDEVVAYPTEAVFGLGCNPLSESAVRKLLDLKQRPIEKGLILVAPNLHFLQ 62 Query: 72 KHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKL 127 + LS + P+T V+ + ++ T + R K L Sbjct: 63 QFIDFSHLSDEQLSRLQAQYDHPITWVVP--AKAEVPHFLTGQFNSIAVRLCTHPAVKAL 120 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 E G L SAN +G+ N + S + P ++D + + S I ++ + Sbjct: 121 CEKTGFALTSTSANLTGKSPCRNADAV-RSQFGADFP-VLDEVVGQAQNPSEIRDLLTNQ 178 Query: 188 KVR 190 R Sbjct: 179 LFR 181 >gi|237841787|ref|XP_002370191.1| yrdC domain protein [Toxoplasma gondii ME49] gi|211967855|gb|EEB03051.1| yrdC domain protein [Toxoplasma gondii ME49] gi|221482657|gb|EEE20995.1| yrdC domain protein, putative [Toxoplasma gondii GT1] gi|221503150|gb|EEE28856.1| yrdC domain protein, putative [Toxoplasma gondii VEG] Length = 762 Score = 136 bits (343), Expect = 6e-30, Method: Composition-based stats. Identities = 52/169 (30%), Positives = 69/169 (40%), Gaps = 30/169 (17%) Query: 20 DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV--- 76 G +A PTETVYGL + P A R++ KKRPA +PLICHV + + Sbjct: 156 RRGGLVAFPTETVYGLGAAATLPHACSRVFRCKKRPASDPLICHVVSVQQAFEQVYDLDE 215 Query: 77 --DPLSLH------------------LAKLFWPGPLTLV------LDLLSTTDIHPLSTA 110 + LA FWPGPL++V D + TA Sbjct: 216 GETEEAARGESLSLQEKRDLRVLIATLADAFWPGPLSIVAKGKILEDRRDGKGVALAVTA 275 Query: 111 NLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSS 158 + R P LI G P+ PSANR G+IS T H+++ Sbjct: 276 GTRFVAARCPNHPYALSLIAAAGVPIVAPSANRFGRISPTRASHVINQF 324 >gi|95007168|emb|CAJ20389.1| hypothetical protein, conserved [Toxoplasma gondii RH] Length = 663 Score = 135 bits (342), Expect = 6e-30, Method: Composition-based stats. Identities = 52/169 (30%), Positives = 69/169 (40%), Gaps = 30/169 (17%) Query: 20 DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV--- 76 G +A PTETVYGL + P A R++ KKRPA +PLICHV + + Sbjct: 56 RRGGLVAFPTETVYGLGAAATLPHACSRVFRCKKRPASDPLICHVVSVQQAFEQVYDLDE 115 Query: 77 --DPLSLH------------------LAKLFWPGPLTLV------LDLLSTTDIHPLSTA 110 + LA FWPGPL++V D + TA Sbjct: 116 GETEEAARGESLSLQEKRDLRVLIATLADAFWPGPLSIVAKGKILEDRRDGKGVALAVTA 175 Query: 111 NLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSS 158 + R P LI G P+ PSANR G+IS T H+++ Sbjct: 176 GTRFVAARCPNHPYALSLIAAAGVPIVAPSANRFGRISPTRASHVINQF 224 >gi|326673468|ref|XP_003199892.1| PREDICTED: hypothetical protein LOC335392 [Danio rerio] Length = 876 Score = 135 bits (342), Expect = 6e-30, Method: Composition-based stats. Identities = 42/206 (20%), Positives = 84/206 (40%), Gaps = 11/206 (5%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S ++ + E + G +PT+TVY L P A+ + Y +KK+ P+ V+ I Sbjct: 607 STSVHQIAEIMKNGGICGMPTDTVYVLVAACNRPQAVEKAYSVKKQAKERPMSLWVASIK 666 Query: 69 MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLS-----TTDIHPLSTANLKTACFRVP-C 121 ++ + P+ + WP ++LV+ ++ R P C Sbjct: 667 QLEPVRKQISPILWDFMEAAWPSSISLVIARAPWMEFFGLGDSSKYIGTPQSIAIRNPDC 726 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 LI G P+A+ SAN +G+ T+ + + + ++ ++ G S + ST+V Sbjct: 727 TVATHLINAVG-PIAVTSANPTGEADTTHHNQVY-AKLGDKVDGVLCDGPSPENIASTVV 784 Query: 182 NVQC--EKKVRILRPGGLEIETLKRA 205 + ++ R G + + + Sbjct: 785 DCTKIESGQIGFFRVGLIPKSKVLQI 810 >gi|329122573|ref|ZP_08251154.1| SUA5/YciO/yrdC family domain protein [Haemophilus aegyptius ATCC 11116] gi|327473124|gb|EGF18550.1| SUA5/YciO/yrdC family domain protein [Haemophilus aegyptius ATCC 11116] Length = 183 Score = 135 bits (342), Expect = 6e-30, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 72/182 (39%), Gaps = 8/182 (4%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 + + L +A PTE V+GL + ++ +A+++L ++K+RP LI + + Sbjct: 4 EQIADALRQNQMVAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRP 63 Query: 73 HAS---VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLI 128 ++ L + + P T ++ STT T + R K L Sbjct: 64 FVDFEQINDEQLSRLQGKYERPTTWIVPAKSTT--PHFLTGKFDSIAIRLCDHPSVKALC 121 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E G L SAN +G+ + + P ++D + + S I +++ + Sbjct: 122 EITGFALTSTSANLTGEPPCRTADEV-RLQFGADFP-VLDEMVGRAHNPSEIRDLRTNQL 179 Query: 189 VR 190 R Sbjct: 180 FR 181 >gi|116329499|ref|YP_799219.1| Sua5 family translation factor [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116122243|gb|ABJ80286.1| Translation factor, SUA5 family [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 202 Score = 135 bits (342), Expect = 6e-30, Method: Composition-based stats. Identities = 50/190 (26%), Positives = 83/190 (43%), Gaps = 6/190 (3%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 ++ L++ L G PT+TVY L DS++ + +LYE+K P PL I Sbjct: 11 ENRKLQQISTKLLEGGVYIFPTDTVYALVADSQSKLGVEKLYELKNIPKNQPLSLICPSI 70 Query: 68 SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TK 125 S+ + + + L K PGP T + S K R+P + Sbjct: 71 SVASNYIEYLSNEAFRLMKKITPGPFTFITRANKHLPRVSFSNQKEKQIGIRIPDAIYLQ 130 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 L++ + +PL S + + I +L + I+DGGI K+ L STI+N+ Sbjct: 131 SLLKIHPNPLTSTSVFANDEFIIEVD--LLEQIYGARVEGIVDGGIVKMEL-STILNMTN 187 Query: 186 EKKVRILRPG 195 ++ + I+R G Sbjct: 188 DE-MTIIREG 196 >gi|229821388|ref|YP_002882914.1| Sua5/YciO/YrdC/YwlC family protein [Beutenbergia cavernae DSM 12333] gi|229567301|gb|ACQ81152.1| Sua5/YciO/YrdC/YwlC family protein [Beutenbergia cavernae DSM 12333] Length = 206 Score = 135 bits (342), Expect = 7e-30, Method: Composition-based stats. Identities = 33/189 (17%), Positives = 68/189 (35%), Gaps = 4/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 A+ + L A IA PT++ Y L N A R+ I++ + + +D + Sbjct: 14 PRAVAQIVAMLRADALIAYPTDSCYALGARVDNHDATERIRRIRQLDSRHEFTLVCADFA 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + +D + + PGP T VL ++ +T R+P + + Sbjct: 74 QLGRLVHLDNAAFRAIRAATPGPYTFVLPATPEVP-RRVAQEKKRTVGVRIPDHPVVRAI 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + PL + + + + ++D G + + +T+V+ Sbjct: 133 LRELDQPLLSSTLLLPDAEEPMTEGWQIKEQLDTVVDAVVDAGDCGV-VPTTVVDYSSGA 191 Query: 188 KVRILRPGG 196 I+R G Sbjct: 192 P-EIMRVGA 199 >gi|302879854|ref|YP_003848418.1| SUA5/yciO/yrdC domain [Gallionella capsiferriformans ES-2] gi|302582643|gb|ADL56654.1| SUA5/yciO/yrdC domain [Gallionella capsiferriformans ES-2] Length = 184 Score = 135 bits (342), Expect = 7e-30, Method: Composition-based stats. Identities = 41/184 (22%), Positives = 72/184 (39%), Gaps = 6/184 (3%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + R +L +G IA PTE+ YGL D N +A+R+L +K+RP LI SD Sbjct: 5 PASFRSIAAYLKSGGLIAYPTESCYGLGCDPLNRSAVRKLLRLKQRPQAKGLILIASDYR 64 Query: 69 MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + ++ ++ K +T ++ + T + T R+ ++ Sbjct: 65 QLARYLQPLNESGQARLKADGAKAITYLMPVKKTA--PRWLCGSHDTLAVRLTAHPLARQ 122 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L L SAN SG S+ + ++ G + K + S I+ Sbjct: 123 LCRGVKSALVSTSANLSGMRPAKTYAQC--QSLFGKQVWVLPGCVGKRKIPSRILAWADG 180 Query: 187 KKVR 190 + +R Sbjct: 181 RTIR 184 >gi|33339163|gb|AAQ14263.1|AF250397_1 dopamine receptor interacting protein 3 [Homo sapiens] Length = 223 Score = 135 bits (342), Expect = 7e-30, Method: Composition-based stats. Identities = 61/195 (31%), Positives = 97/195 (49%), Gaps = 12/195 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ALR A L AG +A+PT+T+YGLA + A+R +Y +K R PL + ++ Sbjct: 11 TEALRAAVAELRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVA 70 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 V ++ V + L K PGP+TLV++ + +++ R+P F + L Sbjct: 71 DVYRYCRVR-VPEGLLKDLLPGPVTLVMER--SEELNKDLNPFTPLVGIRIPDHAFMQDL 127 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE------STIV 181 + + PLA+ SAN S Q S NV+ + ++ L+IDGG G ST+V Sbjct: 128 AQMFEGPLALTSANLSSQASSLNVEE--FQDLWPQLSLVIDGGQIGDGQSPECRLGSTVV 185 Query: 182 NVQCEKKVRILRPGG 196 ++ K I+RPG Sbjct: 186 DLSVPGKFGIIRPGC 200 >gi|85060221|ref|YP_455923.1| hypothetical protein SG2243 [Sodalis glossinidius str. 'morsitans'] gi|123518722|sp|Q2NQQ7|RIMN_SODGM RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|84780741|dbj|BAE75518.1| conserved hypothetical protein [Sodalis glossinidius str. 'morsitans'] Length = 190 Score = 135 bits (341), Expect = 8e-30, Method: Composition-based stats. Identities = 45/192 (23%), Positives = 79/192 (41%), Gaps = 8/192 (4%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 +M + S + L IA PTE V+GL + + +A++ L +K+RP LI Sbjct: 1 MMIESSSQDVASLVIALRQQQVIAYPTEAVFGLGCNPDSESAVQALLALKQRPWQKGLIL 60 Query: 63 HVSDISMVKKHASVDPLSLH---LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 + + +K++ D L WPGP+T V+ + TT T + RV Sbjct: 61 VAAHYAQLKEYIDDDALDDAARSRIFASWPGPVTWVIPVCPTT--PSWLTGQHASLAVRV 118 Query: 120 PC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 ++L +G PL SAN +GQ + + + L++D + + Sbjct: 119 SAFEPVRRLCLAFGKPLVSTSANLTGQPPARSADEV-RGQLGAAF-LVLDEAVEGRLNPT 176 Query: 179 TIVNVQCEKKVR 190 I + + +R Sbjct: 177 EIRDALSGELIR 188 >gi|197121814|ref|YP_002133765.1| Sua5/YciO/YrdC/YwlC family protein [Anaeromyxobacter sp. K] gi|196171663|gb|ACG72636.1| Sua5/YciO/YrdC/YwlC family protein [Anaeromyxobacter sp. K] Length = 212 Score = 135 bits (341), Expect = 9e-30, Method: Composition-based stats. Identities = 63/189 (33%), Positives = 90/189 (47%), Gaps = 5/189 (2%) Query: 20 DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL 79 AG + PTET YGL + + A+ RL K RP PL +D V + AS++ Sbjct: 17 RAGGIVVYPTETFYGLGALASDDAALARLAAAKLRPEGKPLPLVAADREQVDRVASLEGA 76 Query: 80 SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIP 138 + LA WPGPLTLVL + TA T R+P + L G L Sbjct: 77 AARLAGRLWPGPLTLVLPARPG--LSEAVTAGSGTVGVRIPGSEVARALARMAGGALVST 134 Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLE 198 SAN SG V L +++ ++ ++D G + GL ST+V V E +R++RPG + Sbjct: 135 SANLSGGPPPDRV-EALDAALRAQVDHVLDAGPTPGGLPSTVVAVAGE-ALRVVRPGAVS 192 Query: 199 IETLKRAIS 207 IE + A+ Sbjct: 193 IEQVTAALG 201 >gi|284006128|emb|CBA71369.1| RNA-binding protein [Arsenophonus nasoniae] Length = 189 Score = 135 bits (341), Expect = 9e-30, Method: Composition-based stats. Identities = 42/186 (22%), Positives = 69/186 (37%), Gaps = 8/186 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + R L+ G IA PTE V+GL D N +R+L +K+R LI D Sbjct: 6 PPSFRNIIAALNEGKIIAYPTEAVFGLGCDPDNEKTVRQLLLLKQRSWKKGLILIAGDYE 65 Query: 69 MVKKHASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124 + + + L + +T V+ T T + R+ Sbjct: 66 QLIPYIDDNKLTNLQKEMMLSTGSKSITWVVPARKNT--PKWLTGKFDSIAVRITNFELI 123 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 KKL YG PL SAN +G + ++ + ++ ++DG + S I ++ Sbjct: 124 KKLCFLYGKPLISTSANLNGLSPCRTKEEVI-AQFNGQV-SVLDGSVGGRKNPSEIRDII 181 Query: 185 CEKKVR 190 R Sbjct: 182 TGHLYR 187 >gi|260583205|ref|ZP_05850984.1| fructose 1,6-bisphosphatase II [Haemophilus influenzae NT127] gi|260093762|gb|EEW77671.1| fructose 1,6-bisphosphatase II [Haemophilus influenzae NT127] Length = 183 Score = 135 bits (341), Expect = 9e-30, Method: Composition-based stats. Identities = 38/182 (20%), Positives = 71/182 (39%), Gaps = 8/182 (4%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 + E L +A PTE V+GL + ++ +A+++L ++K+RP LI + + Sbjct: 4 EQIAEALRQNQVVAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRP 63 Query: 73 HAS---VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLI 128 ++ L + + P T ++ STT T + R K L Sbjct: 64 FVDFELINDEQLSRLQGKYERPTTWIVPAKSTT--SYFLTGKFDSIAVRLCDHSSVKALC 121 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E G L SAN +G+ + + P ++D + S I +++ + Sbjct: 122 ELVGFALTSTSANLTGEPPCRIADEV-RLQFGADFP-VLDETVGDARNPSEIRDLRTNQL 179 Query: 189 VR 190 R Sbjct: 180 FR 181 >gi|302549025|ref|ZP_07301367.1| SUA5/YciO/YrdC/YwlC family protein [Streptomyces viridochromogenes DSM 40736] gi|302466643|gb|EFL29736.1| SUA5/YciO/YrdC/YwlC family protein [Streptomyces viridochromogenes DSM 40736] Length = 200 Score = 135 bits (341), Expect = 9e-30, Method: Composition-based stats. Identities = 34/196 (17%), Positives = 68/196 (34%), Gaps = 4/196 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + + + A +A PT++ Y L + I R+ I+K + D + Sbjct: 8 PRTIGQIADSIRADALVAYPTDSCYALGCRLGSRDGIERIRTIRKLDDRHHFTLVCQDFA 67 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + +D K PG T +L L KT R+P T+ L Sbjct: 68 QLGQFVRIDNDVFRAIKASTPGSYTFILPATREVP-RMLQHPKKKTVGVRIPDHVVTQAL 126 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + G+ + + + ++D G +T+++ Sbjct: 127 LTELGEPLLSSTLLLPGEEEPMTQGWEIKDELDHVLDGVVDSGECGT-EPTTVIDFSG-G 184 Query: 188 KVRILRPGGLEIETLK 203 + I+R G + + Sbjct: 185 EAEIVRRGAGDTSRFE 200 >gi|239933051|ref|ZP_04690004.1| hypothetical protein SghaA1_32818 [Streptomyces ghanaensis ATCC 14672] Length = 206 Score = 135 bits (341), Expect = 9e-30, Method: Composition-based stats. Identities = 33/196 (16%), Positives = 70/196 (35%), Gaps = 4/196 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + + + + IA PT++ Y L + I R+ I+K + + + Sbjct: 14 PRTIAQVADGIRSDALIAYPTDSCYALGCRLGSRDGIDRIRTIRKLDDRHHFTLVCQNFA 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + +D K PG T +L L KT R+P T+ L Sbjct: 74 QLGQFVRIDNDVFRAVKASTPGSYTFILPATKEVP-RMLQHPKKKTVGVRIPDHVVTQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + G+ + + + +++D G +T+++ Sbjct: 133 LAELGEPLLSSTLLLPGEDEPMTQGWEIKDRLDHVVDVVLDSGDCGT-EPTTVIDFSG-G 190 Query: 188 KVRILRPGGLEIETLK 203 + I+R G ++ + Sbjct: 191 EAEIVRRGAGDVSRFE 206 >gi|254386122|ref|ZP_05001435.1| conserved hypothetical protein [Streptomyces sp. Mg1] gi|194344980|gb|EDX25946.1| conserved hypothetical protein [Streptomyces sp. Mg1] Length = 200 Score = 135 bits (341), Expect = 9e-30, Method: Composition-based stats. Identities = 32/196 (16%), Positives = 67/196 (34%), Gaps = 4/196 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + + + G +A PT++ Y L N + R+ I+ + + + Sbjct: 8 ARTISSIADSIRGGALVAYPTDSCYALGCQLGNRDGLNRIRTIRNLDDRHHFTLVCQNFA 67 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + ++D K PG T +L L KT R+P T+ L Sbjct: 68 QLGQFVNLDNNVFRAVKAATPGSYTFILPATKEVP-RQLLHPKKKTVGVRIPDHVVTQAL 126 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + + + + + +ID G +T+++ Sbjct: 127 LAELGEPLLSSTLLLPDEAEPMTQGWEIKDRLDHVVDSVIDSGECGT-EPTTVIDFSS-G 184 Query: 188 KVRILRPGGLEIETLK 203 + I+R G + + Sbjct: 185 EAEIVRRGAGDPSRFE 200 >gi|148826708|ref|YP_001291461.1| fructose 1,6-bisphosphatase II [Haemophilus influenzae PittEE] gi|212277676|sp|A5UE77|RIMN_HAEIE RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|148716868|gb|ABQ99078.1| fructose 1,6-bisphosphatase II [Haemophilus influenzae PittEE] Length = 183 Score = 135 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 70/182 (38%), Gaps = 8/182 (4%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 + L +A PTE V+GL + ++ +A+++L ++K+RP LI + + Sbjct: 4 EQIANALRQNQVVAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRP 63 Query: 73 HAS---VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLI 128 ++ L + + P T ++ STT T + R K L Sbjct: 64 FVDFEQINDEQLSRLQGKYERPTTWIVPSKSTT--PYFLTGKFDSIAVRLCDHPSVKALC 121 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E G L SAN +G+ + + P ++D + S I +++ + Sbjct: 122 ELTGFALTSTSANLTGEPPCRIADEV-RLQFGADFP-VLDETVGDARNPSEIRDLRTNQL 179 Query: 189 VR 190 R Sbjct: 180 FR 181 >gi|218654185|emb|CAB55118.2| C. elegans protein Y48C3A.18a, confirmed by transcript evidence [Caenorhabditis elegans] Length = 216 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 64/210 (30%), Positives = 100/210 (47%), Gaps = 14/210 (6%) Query: 2 QIMSITD---SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58 +I+ +T A+ A G +A+PT+T+YG++ + RLY +K+RP Sbjct: 6 RILRLTADNIEEAIDAAVCVFLRGGIVALPTDTLYGISTLLQYSD---RLYALKQRPYEK 62 Query: 59 PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 PL + + + K S +S LA PGP+TL+ + L + + R Sbjct: 63 PLGIFLPSPTAM-KLVSRQTISDELANCLLPGPVTLMFERLPC--LPAEFNPGVVNVACR 119 Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSG-QISITNVKHILSSSICKEIPLIIDGG-ISKIG 175 VP C + + G PLA SAN SG ++ T++ H + I LI+D G I G Sbjct: 120 VPDCPIVSTICKKLGQPLAQTSANVSGSSLNPTSIDH--FRDLHPNIDLILDAGSIISSG 177 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRA 205 STIV++ E RI+R G E ET+++ Sbjct: 178 EGSTIVDLTVESGFRIVRSGCAEKETMQKL 207 >gi|30908964|gb|AAP37032.1| ischemia/reperfusion inducible protein [Mus musculus] Length = 263 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 59/195 (30%), Positives = 99/195 (50%), Gaps = 12/195 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ALR A L AG +A+PT+T+YGLA + + A+ +Y +K R PL + ++ Sbjct: 51 TEALRAAVAELRAGAVVAVPTDTLYGLACSASSSAALSCVYRLKGRSEAKPLAVCLGRVA 110 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 V ++ V + L + +PGP+TLV++ + +++ + R+P F L Sbjct: 111 DVYRYCQVR-VPRELLEDLFPGPVTLVMER--SEELNKDLNPFTRLVGIRIPDHAFMLDL 167 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI------SKIGLESTIV 181 + +G PLA+ SAN S Q S +V+ + + L+IDGG + L ST+V Sbjct: 168 AQMFGGPLALTSANLSSQASSLSVEE--FQDLWPHLSLVIDGGPIGDSQSPECRLGSTVV 225 Query: 182 NVQCEKKVRILRPGG 196 ++ K I+RPG Sbjct: 226 DLSVPGKFGIIRPGC 240 >gi|91070122|gb|ABE11046.1| conserved hypothetical protein [uncultured Prochlorococcus marinus clone ASNC729] Length = 193 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 52/192 (27%), Positives = 82/192 (42%), Gaps = 8/192 (4%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 + A + L +GLPI PT+T+ + + A +Y K+R PLI S+ + Sbjct: 7 KSALKTLKSGLPIIFPTDTLPAIGCLPKFSNA---IYTFKRRDRDKPLILMGSEPKQLID 63 Query: 73 HASVD--PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130 + ++A +WPG LT+V+ + T+N T RVP + + + Sbjct: 64 YVHESAKEDYENIASKYWPGALTMVIPASEKQT--KILTSNDLTLGLRVPNLYMAQSLMK 121 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 PL SAN SG T V+ I +I I G + G STI+ + R Sbjct: 122 ETGPLLTSSANISGLKGSTTVEDIALDFPSLKILGPIPWGK-RSGKASTIIFWKKSGDWR 180 Query: 191 ILRPGGLEIETL 202 +LR G + + L Sbjct: 181 LLREGEVLVREL 192 >gi|325114035|emb|CBZ49593.1| sua5/YciO/YrdC/YwlC family protein, related [Neospora caninum Liverpool] Length = 791 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 57/179 (31%), Positives = 72/179 (40%), Gaps = 40/179 (22%) Query: 20 DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA----- 74 G +A PTETVYGL + P A R++ KKRPA +PLICHV + + Sbjct: 150 RRGGLVAFPTETVYGLGAAATVPAACNRVFFCKKRPASDPLICHVVSVQQAFEQVFDLDE 209 Query: 75 --------------------SVDPLSLH--------LAKLFWPGPLTLV------LDLLS 100 P LA FWPGPL++V D Sbjct: 210 EDSEQSARDRLTENPTAFPRKFTPQERRDLRLLIETLADAFWPGPLSIVAKGKILEDRKD 269 Query: 101 TTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSS 158 T + TA + R P LI G P+A PSANR G+IS T KH+L+ Sbjct: 270 GTGVALAVTAGTRLVAVRCPNHPYALSLIAAAGVPIAAPSANRFGRISPTRAKHVLNQF 328 Score = 45.8 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 7/57 (12%) Query: 278 AAFNLFNYMKIADD----SGASSIAFSSIP---NHGLGIAINNRLERAAAPRNQSQR 327 AA N+F + A+ GA +I ++ P G+A+ +RL RAA+ + R Sbjct: 720 AAGNVFAALHEAEAIGLQLGAKAILINAAPLLKGREAGLAVFDRLFRAASGKQAQMR 776 >gi|291441401|ref|ZP_06580791.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] gi|291344296|gb|EFE71252.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] Length = 200 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 33/196 (16%), Positives = 70/196 (35%), Gaps = 4/196 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + + + + IA PT++ Y L + I R+ I+K + + + Sbjct: 8 PRTIAQVADGIRSDALIAYPTDSCYALGCRLGSRDGIDRIRTIRKLDDRHHFTLVCQNFA 67 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + +D K PG T +L L KT R+P T+ L Sbjct: 68 QLGQFVRIDNDVFRAVKASTPGSYTFILPATKEVP-RMLQHPKKKTVGVRIPDHVVTQAL 126 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + G+ + + + +++D G +T+++ Sbjct: 127 LAELGEPLLSSTLLLPGEDEPMTQGWEIKDRLDHVVDVVLDSGDCGT-EPTTVIDFSG-G 184 Query: 188 KVRILRPGGLEIETLK 203 + I+R G ++ + Sbjct: 185 EAEIVRRGAGDVSRFE 200 >gi|159902895|ref|YP_001550239.1| putative translation factor (SUA5) [Prochlorococcus marinus str. MIT 9211] gi|159888071|gb|ABX08285.1| Putative translation factor (SUA5) [Prochlorococcus marinus str. MIT 9211] Length = 196 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 96/207 (46%), Gaps = 14/207 (6%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 MQ+ N ++K L+ G P+ PT+T+ LA ++ + +L+EIK R M PL Sbjct: 1 MQLSLFDSCNLVKK----LNEGSPVVFPTDTLPALAALPKHSS---QLWEIKNRSRMKPL 53 Query: 61 ICHVSDISMVKKHA--SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 I + K +V ++++A +WPGPLT+VL S++++ L + R Sbjct: 54 ILMGESPKQLFKFVYPNVLEDAIYMANRYWPGPLTMVLP--SSSNLVGLLNPGGSSIGLR 111 Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 +P C KK + G PLA SAN SGQ + ++ L GL Sbjct: 112 IPECDLAKKFLAKSG-PLATTSANLSGQ-KPSIDPEEITKCFPGFPLLGPIPWPKSSGLA 169 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKR 204 ST++ Q ++R G + E L++ Sbjct: 170 STVIAWQGPGNWHLIRRGAVIPENLEK 196 >gi|116332436|ref|YP_802154.1| Sua5 family translation factor [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116126125|gb|ABJ77396.1| Translation factor, SUA5 family [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 202 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 50/190 (26%), Positives = 83/190 (43%), Gaps = 6/190 (3%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 ++ L++ L G PT+TVY L DS++ + +LYE+K P PL I Sbjct: 11 ENRKLQQISTKLLEGGIYIFPTDTVYALVADSQSKLGVEKLYELKNIPKNQPLSLICPSI 70 Query: 68 SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TK 125 S+ + + + L K PGP T + S K R+P + Sbjct: 71 SVASNYIEYLSNEAFRLMKKITPGPFTFITRANKHLPRVSFSNQKEKQIGIRIPDAIYLQ 130 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 L++ + +PL S + + I +L + I+DGGI K+ L STI+N+ Sbjct: 131 SLLKIHPNPLTSTSVFANDEFIIEVD--LLEQIYGARVEGIVDGGIVKMEL-STILNMTN 187 Query: 186 EKKVRILRPG 195 ++ + I+R G Sbjct: 188 DE-MTIIREG 196 >gi|226227089|ref|YP_002761195.1| hypothetical protein GAU_1683 [Gemmatimonas aurantiaca T-27] gi|226090280|dbj|BAH38725.1| hypothetical protein [Gemmatimonas aurantiaca T-27] Length = 224 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 56/203 (27%), Positives = 85/203 (41%), Gaps = 6/203 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +LR L AG +A PTETVYG + + ++ L +K RP P + + D Sbjct: 18 EASLRDTILHLGAGRVLAYPTETVYGFGT-AVDHDSVEALVRMKGRPPGKPFLLLIGDPG 76 Query: 69 MVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 V + + + LA FWPGPLTLVL A P ++L Sbjct: 77 QVARLDLHLPTYAAQLAARFWPGPLTLVLRGGDQRVPARARGPEGGVAVRWTPHPGLQRL 136 Query: 128 IETYGHPLAIPSANRSGQISITNVKHI---LSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + YG P+ SANR I + I + ++DGG ST+V+ Sbjct: 137 LTAYGEPITSTSANRPRVPPAMTASEIVTQWPAEIHRGTLRVLDGGRLAPSDSSTVVDCT 196 Query: 185 CEKKVRILRPGGLEIETLKRAIS 207 ++ R++RPG L L+ ++ Sbjct: 197 G-RRARVIRPGALPAPLLRTCVA 218 >gi|225012824|ref|ZP_03703258.1| Sua5/YciO/YrdC/YwlC family protein [Flavobacteria bacterium MS024-2A] gi|225003098|gb|EEG41074.1| Sua5/YciO/YrdC/YwlC family protein [Flavobacteria bacterium MS024-2A] Length = 205 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 44/194 (22%), Positives = 82/194 (42%), Gaps = 13/194 (6%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAI---RRLYEIKKRPAMNPLICHV 64 + + +A L+ G I PT+TVYGL S N + ++ ++K + PL Sbjct: 13 NPKHIEEAARILNQGGLIIFPTDTVYGLGCLSNNKKGLSRFAKIRDVK--IELAPLSFLF 70 Query: 65 SDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 DI + + ++ + L K PGP L+++ P KT R+ Sbjct: 71 QDIRELTNYVQHMNSTTFKLVKKLLPGPYALIMNAAPKL---PKPFHKRKTIGVRISSHV 127 Query: 123 FTKKLIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 ++L+ PL S + +I T +L +I L++ G + + ST++ Sbjct: 128 VLQQLLPLLDAPLITSSLHDPDEILDYTTDPEVLFQQWESKIDLMLSDGYGQ-NIPSTVL 186 Query: 182 NVQCEKKVRILRPG 195 ++ E+ +I+R G Sbjct: 187 DLT-EEPFQIIREG 199 >gi|88811389|ref|ZP_01126644.1| Putative translation factor, SUA5/yciO/yrdC-like protein [Nitrococcus mobilis Nb-231] gi|88791278|gb|EAR22390.1| Putative translation factor, SUA5/yciO/yrdC-like protein [Nitrococcus mobilis Nb-231] Length = 188 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 47/180 (26%), Positives = 73/180 (40%), Gaps = 9/180 (5%) Query: 16 CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-A 74 L AG IA PTE VYGL D R A+ RL E+K R A LI + + ++ A Sbjct: 14 AALLSAGGVIAYPTEAVYGLGCDPRRRDAVVRLLELKGRSARKGLILIAPEADWLAEYMA 73 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-KLIETYGH 133 + WPGP+T V+ + I T T RV L +G Sbjct: 74 PLSEAVAAQMMASWPGPVTWVVPAAARAPI--WLTGGRGTIALRVTAHPVASALCRAFGG 131 Query: 134 PLAIPSANRSGQISITNVKHILSSSI--CKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 L SANR+G L + + ++ ++ G + ++ + I++ + +R Sbjct: 132 ALVSTSANRAGGTPARTA---LRTRLLFGPDLDAVVPGKLGELDRPTPILDARSGMILRE 188 >gi|325121146|gb|ADY80669.1| hypothetical protein BDGL_000083 [Acinetobacter calcoaceticus PHEA-2] Length = 195 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 44/197 (22%), Positives = 77/197 (39%), Gaps = 16/197 (8%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A + PT+ Y + N A+ R+ +I+ + D+S Sbjct: 13 QRLIAQAVD----------PTDAAYAIGCQIGNKNAMERIAQIRGLGPKHQYAIMCCDLS 62 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +A VD + L K P T +L S L KT R+P + L Sbjct: 63 DIATYAKVDNATYRLLKANTPAITTFILPATSEVP-RRLMHPKKKTIGLRIPSNPICQAL 121 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST-IVNVQCE 186 ++ G PL + GQ + + + + + K I + IDGG + ST IV++ E Sbjct: 122 LKELGEPLLTSTLILPGQEDPLDDPYDIENQLDKRIEVFIDGGFGTLT--STSIVDLSGE 179 Query: 187 KKVRILRPGGLEIETLK 203 I+R G ++ + Sbjct: 180 HP-EIIRRGVGDVSAFE 195 >gi|218247419|ref|YP_002372790.1| SUA5/yciO/yrdC domain-containing protein [Cyanothece sp. PCC 8801] gi|257061244|ref|YP_003139132.1| SUA5/yciO/yrdC domain protein [Cyanothece sp. PCC 8802] gi|218167897|gb|ACK66634.1| SUA5/yciO/yrdC domain protein [Cyanothece sp. PCC 8801] gi|256591410|gb|ACV02297.1| SUA5/yciO/yrdC domain protein [Cyanothece sp. PCC 8802] Length = 197 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 56/200 (28%), Positives = 82/200 (41%), Gaps = 16/200 (8%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 +T + + A G ++ PT+TV LA +N ++ KKRP PLI Sbjct: 3 KVTQTELIEAA----KMGQVVSFPTDTVPALAALPQNA---ALIFATKKRPPDKPLILMG 55 Query: 65 SDISMVKKHASVDPLSLHL----AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 + I + ++ P L L A+ +WPG LTLVL S ++ + T R+P Sbjct: 56 ASIEALWQYIQGTPEELALWQQIAESYWPGSLTLVLPASSLVPAA-MNPLDPTTIGVRIP 114 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII---DGGISKIGLE 177 + I LA SANRSGQ + + I ++ I I D G Sbjct: 115 NHPIAQAILAETGCLATTSANRSGQPPLETMTAIAANFPDVRILDDINLNDKDKFGSGQP 174 Query: 178 STIVNVQCEKKVRILRPGGL 197 ST+ K ILR G + Sbjct: 175 STVAKWTG-KAWEILRQGSV 193 >gi|229845648|ref|ZP_04465773.1| predicted translation factor SUA5 [Haemophilus influenzae 6P18H1] gi|229811448|gb|EEP47152.1| predicted translation factor SUA5 [Haemophilus influenzae 6P18H1] Length = 183 Score = 134 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 38/182 (20%), Positives = 71/182 (39%), Gaps = 8/182 (4%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 + E L +A PTE V+GL + ++ +A+++L ++K+RP LI + + Sbjct: 4 EQIAEALRQNQVVAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRP 63 Query: 73 HAS---VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLI 128 ++ L + + P T ++ STT T + R K L Sbjct: 64 FVDFELINDEQLSRLQGKYERPTTWIVPAKSTT--SHFLTGKFDSIAVRLCDHPSVKALC 121 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E G L SAN +G+ + + P ++D + S I +++ + Sbjct: 122 ELTGFTLTSTSANLTGEPPCRIADEV-RLQFGADFP-VLDEIVGDARNPSEIRDLRTNQL 179 Query: 189 VR 190 R Sbjct: 180 FR 181 >gi|301169373|emb|CBW28973.1| predicted ribosome maturation factor [Haemophilus influenzae 10810] Length = 183 Score = 134 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 38/182 (20%), Positives = 72/182 (39%), Gaps = 8/182 (4%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 + E L +A PTE V+GL + ++ +A+++L ++K+RP LI + + Sbjct: 4 EQIAEALRQNQVVAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRP 63 Query: 73 HAS---VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLI 128 ++ L + + P T ++ STT T + R K L Sbjct: 64 FVDFELINDEQLSRLQGKYERPTTWIVPAKSTT--SYFLTGKFDSIAVRLCDHSSVKALC 121 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E G L SAN +G+ + + + P ++D + S I +++ + Sbjct: 122 ELVGFALTSTSANLTGEP-PCRISDEVRLQFGADFP-VLDETVGDARNPSEIRDLRTNQL 179 Query: 189 VR 190 R Sbjct: 180 FR 181 >gi|281358353|ref|ZP_06244835.1| Sua5/YciO/YrdC/YwlC family protein [Victivallis vadensis ATCC BAA-548] gi|281315180|gb|EFA99211.1| Sua5/YciO/YrdC/YwlC family protein [Victivallis vadensis ATCC BAA-548] Length = 193 Score = 134 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 54/182 (29%), Positives = 89/182 (48%), Gaps = 16/182 (8%) Query: 20 DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDP 78 G + +PTETVYGL + + A+ ++Y++K R L V D + ++ ++ Sbjct: 24 RPGAVLLLPTETVYGLVCRADDAAAVAKIYDLKDRDRSKLLGWFVGDWRKLAEYGVELEG 83 Query: 79 LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAI 137 L LA+ + PGP+T++ + T FRVP ++++ G PLA Sbjct: 84 LPSELAEKYCPGPITIIARKKAG-----------GTLGFRVPDYPLILEILKLAGVPLAQ 132 Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGG-ISKIGLESTIVNVQCEKKVRILRPGG 196 SAN SG + +VK L+ + ++ L +DGG I ST+V+ VR+LRPG Sbjct: 133 TSANHSGHPNALSVKAALAE-LSGDVELAVDGGDIPPDAQGSTVVDATGN-AVRVLRPGP 190 Query: 197 LE 198 + Sbjct: 191 IS 192 >gi|30909242|gb|AAP37053.1| ischemia/reperfusion inducible protein transcript variant 1 [Homo sapiens] gi|30909244|gb|AAP37054.1| ischemia/reperfusion inducible protein transcript variant 2 [Homo sapiens] gi|114325461|gb|AAH68057.1| YRDC protein [Homo sapiens] Length = 270 Score = 134 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 61/195 (31%), Positives = 97/195 (49%), Gaps = 12/195 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ALR A L AG +A+PT+T+YGLA + A+R +Y +K R PL + ++ Sbjct: 58 TEALRAAVAELRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVA 117 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 V ++ V + L K PGP+TLV++ + +++ R+P F + L Sbjct: 118 DVYRYCRVR-VPEGLLKDLLPGPVTLVMER--SEELNKDLNPFTPLVGIRIPDHAFMQDL 174 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE------STIV 181 + + PLA+ SAN S Q S NV+ + ++ L+IDGG G ST+V Sbjct: 175 AQMFEGPLALTSANLSSQASSLNVEE--FQDLWPQLSLVIDGGQIGDGQSPECRLGSTVV 232 Query: 182 NVQCEKKVRILRPGG 196 ++ K I+RPG Sbjct: 233 DLSVPGKFGIIRPGC 247 >gi|169600167|ref|XP_001793506.1| hypothetical protein SNOG_02913 [Phaeosphaeria nodorum SN15] gi|160705395|gb|EAT89644.2| hypothetical protein SNOG_02913 [Phaeosphaeria nodorum SN15] Length = 354 Score = 134 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 42/126 (33%), Positives = 66/126 (52%), Gaps = 17/126 (13%) Query: 10 NALRKAC-EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +L+KA E + +P+A PTETVYGL D+ +A++ ++ K RPA NPLI H+ +S Sbjct: 40 ESLKKAADELVKTDVPVAFPTETVYGLGADATRSSAVKSIFAAKGRPADNPLIVHIHSLS 99 Query: 69 MVKKHA----------------SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANL 112 ++ S+ + L + FWPGPLT++L +++ + P TA L Sbjct: 100 QLRALLSGQLEEATGGTETGSDSIPTIYKPLIERFWPGPLTIILPTPTSSILAPEVTAGL 159 Query: 113 KTACFR 118 T R Sbjct: 160 PTFGAR 165 Score = 51.2 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 3/47 (6%) Query: 276 KEAAFNLFNYMKIADDSGASSIAFSS---IPNHGLGIAINNRLERAA 319 + A LF+ ++ D I + + A+ NRL +AA Sbjct: 304 EGVARGLFSALRELDKKSVEVIYVEGIDDKIDDDIAAAVMNRLRKAA 350 Score = 49.3 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 12/24 (50%), Positives = 18/24 (75%) Query: 215 DETSTPQSPGMLKSHYAPRSQVRL 238 +TS P++PGM HY+P++QV L Sbjct: 179 GDTSKPRAPGMKYRHYSPKAQVVL 202 >gi|332248384|ref|XP_003273344.1| PREDICTED: yrdC domain-containing protein, mitochondrial-like [Nomascus leucogenys] Length = 270 Score = 134 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 61/195 (31%), Positives = 97/195 (49%), Gaps = 12/195 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ALR A L AG +A+PT+T+YGLA + A+R +Y +K R PL + ++ Sbjct: 58 TEALRAAVAELRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVA 117 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 V ++ V + L K PGP+TLV++ + +++ R+P F + L Sbjct: 118 DVYRYCRVR-VPEGLLKDLLPGPVTLVMER--SEELNKDLNPFTPLVGIRIPDHAFMQDL 174 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE------STIV 181 + + PLA+ SAN S Q S NV+ + ++ L+IDGG G ST+V Sbjct: 175 AQMFEGPLALTSANLSSQASSLNVEE--FQDLWPQLSLVIDGGQIGDGQSPECRLGSTVV 232 Query: 182 NVQCEKKVRILRPGG 196 ++ K I+RPG Sbjct: 233 DLSVPGKFGIIRPGC 247 >gi|58761510|ref|NP_078916.3| yrdC domain-containing protein, mitochondrial precursor [Homo sapiens] gi|74750410|sp|Q86U90|YRDC_HUMAN RecName: Full=YrdC domain-containing protein, mitochondrial; AltName: Full=Dopamine receptor-interacting protein 3; AltName: Full=Ischemia/reperfusion-inducible protein homolog; Short=hIRIP; Flags: Precursor gi|30691316|gb|AAO41711.1| YRDC protein [Homo sapiens] gi|55666462|emb|CAH70083.1| yrdC domain containing (E. coli) [Homo sapiens] gi|66840171|gb|AAH80186.2| YrdC domain containing (E. coli) [Homo sapiens] gi|119627722|gb|EAX07317.1| yrdC domain containing (E. coli), isoform CRA_a [Homo sapiens] Length = 279 Score = 134 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 61/195 (31%), Positives = 97/195 (49%), Gaps = 12/195 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ALR A L AG +A+PT+T+YGLA + A+R +Y +K R PL + ++ Sbjct: 67 TEALRAAVAELRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVA 126 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 V ++ V + L K PGP+TLV++ + +++ R+P F + L Sbjct: 127 DVYRYCRVR-VPEGLLKDLLPGPVTLVMER--SEELNKDLNPFTPLVGIRIPDHAFMQDL 183 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE------STIV 181 + + PLA+ SAN S Q S NV+ + ++ L+IDGG G ST+V Sbjct: 184 AQMFEGPLALTSANLSSQASSLNVEE--FQDLWPQLSLVIDGGQIGDGQSPECRLGSTVV 241 Query: 182 NVQCEKKVRILRPGG 196 ++ K I+RPG Sbjct: 242 DLSVPGKFGIIRPGC 256 >gi|73909159|gb|AAH67857.2| YRDC protein [Homo sapiens] Length = 278 Score = 134 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 61/195 (31%), Positives = 97/195 (49%), Gaps = 12/195 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ALR A L AG +A+PT+T+YGLA + A+R +Y +K R PL + ++ Sbjct: 66 TEALRAAVAELRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVA 125 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 V ++ V + L K PGP+TLV++ + +++ R+P F + L Sbjct: 126 DVYRYCRVR-VPEGLLKDLLPGPVTLVMER--SEELNKDLNPFTPLVGIRIPDHAFMQDL 182 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE------STIV 181 + + PLA+ SAN S Q S NV+ + ++ L+IDGG G ST+V Sbjct: 183 AQMFEGPLALTSANLSSQASSLNVEE--FQDLWPQLSLVIDGGQIGDGQSPECRLGSTVV 240 Query: 182 NVQCEKKVRILRPGG 196 ++ K I+RPG Sbjct: 241 DLSVPGKFGIIRPGC 255 >gi|261866941|ref|YP_003254863.1| protein YrdC [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412273|gb|ACX81644.1| protein YrdC [Aggregatibacter actinomycetemcomitans D11S-1] Length = 183 Score = 134 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 41/183 (22%), Positives = 69/183 (37%), Gaps = 8/183 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L+ E L +A PTE V+GL + + +A+ L +K+RP LI + + + Sbjct: 3 LQDIVEQLKRQRVVAYPTEAVFGLGCNPNSQSAVENLLVLKQRPVSKGLILIATALDFLL 62 Query: 72 KHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-L 127 PL+ + P T V+ TT T + + R+ K L Sbjct: 63 PFIDERPLAELHWQRLTAQYARPTTWVVPAKKTT--PKFLTGDFDSIAVRISQHPAVKLL 120 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 E G L SAN SGQ + + + P +++ + S I ++ + Sbjct: 121 CEQAGFALTSTSANLSGQPPCRTAQEVTR-QFGADFP-VLEMPVGDAVNPSEIRDIFTNQ 178 Query: 188 KVR 190 R Sbjct: 179 IFR 181 >gi|148698400|gb|EDL30347.1| yrdC domain containing (E.coli) [Mus musculus] Length = 263 Score = 134 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 59/195 (30%), Positives = 99/195 (50%), Gaps = 12/195 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ALR A L AG +A+PT+T+YGLA + + A+ +Y +K R PL + ++ Sbjct: 51 TEALRAAVAELRAGAVVAVPTDTLYGLACSASSSAALSCVYRLKGRSEAKPLAVCLGRVA 110 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 V ++ V + L + +PGP+TLV++ + +++ + R+P F L Sbjct: 111 DVYRYCQVR-VPRELLEDLFPGPVTLVMER--SEELNKDLNPFTRLVGIRIPDHAFMLDL 167 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI------SKIGLESTIV 181 + +G PLA+ SAN S Q S +V+ + + L+IDGG + L ST+V Sbjct: 168 AQMFGGPLALTSANLSSQASSLSVEE--FQDLWPHLSLVIDGGPIGDSQSPECRLGSTVV 225 Query: 182 NVQCEKKVRILRPGG 196 ++ K I+RPG Sbjct: 226 DLSVPGKFGIIRPGC 240 >gi|304399252|ref|ZP_07381118.1| SUA5/yciO/yrdC domain protein [Pantoea sp. aB] gi|304353178|gb|EFM17559.1| SUA5/yciO/yrdC domain protein [Pantoea sp. aB] Length = 190 Score = 134 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 41/186 (22%), Positives = 69/186 (37%), Gaps = 8/186 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++ L+ IA PTE V+GL D + +A+ L +K+RP LI +D + Sbjct: 7 ADSFENCLAHLNRQAVIAYPTEAVFGLGCDPDSESAVMALLALKQRPVEKGLILIAADYT 66 Query: 69 MVKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-T 124 ++ + S LS W P + + T + RV Sbjct: 67 QLEPYISARELSVMQRERMFACW--PGPVTFVVPVPPQTPRWLTGQFDSLAIRVSDHPDV 124 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + L +G PL SAN SG + + + P ++ G S I +V Sbjct: 125 QALCRAFGKPLVSTSANLSGLPPCRTAEEV-KQQFGEHFP-VLSGKTGGRLNPSEIRDVI 182 Query: 185 CEKKVR 190 + +R Sbjct: 183 SGELIR 188 >gi|55586836|ref|XP_513328.1| PREDICTED: yrdC domain-containing protein, mitochondrial [Pan troglodytes] Length = 279 Score = 134 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 61/195 (31%), Positives = 97/195 (49%), Gaps = 12/195 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ALR A L AG +A+PT+T+YGLA + A+R +Y +K R PL + ++ Sbjct: 67 TEALRAAVAELRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVA 126 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 V ++ V + L K PGP+TLV++ + +++ R+P F + L Sbjct: 127 DVYRYCRVR-VPEGLLKDLLPGPVTLVMER--SEELNKDLNPFTPLVGIRIPDHAFMQDL 183 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE------STIV 181 + + PLA+ SAN S Q S NV+ + ++ L+IDGG G ST+V Sbjct: 184 AQMFEGPLALTSANLSSQASSLNVEE--FQDLWPQLSLVIDGGQIGDGQSPECRLGSTVV 241 Query: 182 NVQCEKKVRILRPGG 196 ++ K I+RPG Sbjct: 242 DLSVPGKFGIIRPGC 256 >gi|320333780|ref|YP_004170491.1| Sua5/YciO/YrdC/YwlC family protein [Deinococcus maricopensis DSM 21211] gi|319755069|gb|ADV66826.1| Sua5/YciO/YrdC/YwlC family protein [Deinococcus maricopensis DSM 21211] Length = 200 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 15/208 (7%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 MS D AL +A + G I TETV+ LA ++ P A+ RL K RP P Sbjct: 1 MSAEDQVALERARVAVLDGRLIGFATETVWALACAAQ-PDAVARLAAAKGRPEGKPFQVL 59 Query: 64 VSDISMVKKHASVDPLSLHL---AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 +D + +D WPGPLTLV +S RVP Sbjct: 60 CADPARAASFFRLDERLRARFLTLAPLWPGPLTLVAPASPLAPAALVSNGR---VGVRVP 116 Query: 121 CGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 ++ G LA S N SG+++ + + L+ ++ ++ G GL ST Sbjct: 117 DHVHAHAVLNAVGGALAASSLNLSGEVAASTFEQALAYALAD----VLLPGPDAAGLAST 172 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAIS 207 +V+++ +LR G + + ++ A++ Sbjct: 173 VVDLETG---VVLREGAVRADAVREALA 197 >gi|73976934|ref|XP_539586.2| PREDICTED: similar to ischemia/reperfusion inducible protein [Canis familiaris] Length = 274 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 57/195 (29%), Positives = 94/195 (48%), Gaps = 12/195 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ALR A L +G + +PT+T+YG A + A+ +Y +K R PL + ++ Sbjct: 60 TEALRAAVSELRSGAVVTVPTDTLYGQACAASCSAALDAVYRLKGRSHAKPLAVCLGRVA 119 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 V ++ V + L + PGP+TLVL+ + +++ R+P F + L Sbjct: 120 DVYRYCRVS-VPEGLLRDLLPGPVTLVLER--SQELNRDLNPCTPLVGVRIPDHAFIQDL 176 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE------STIV 181 + +G PLA+ SAN S Q S V+ + ++ L+IDGG G ST+V Sbjct: 177 AQVFGEPLALTSANLSSQASSLTVEE--FQDLWPQLSLVIDGGPIGDGQSPEYRLGSTVV 234 Query: 182 NVQCEKKVRILRPGG 196 ++ K I+RPG Sbjct: 235 DLSVPGKFGIIRPGC 249 >gi|260913386|ref|ZP_05919867.1| Sua5/YciO/YrdC/YwlC family protein [Pasteurella dagmatis ATCC 43325] gi|260632617|gb|EEX50787.1| Sua5/YciO/YrdC/YwlC family protein [Pasteurella dagmatis ATCC 43325] Length = 183 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 72/183 (39%), Gaps = 8/183 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + L +A PTE V+GL + + +A+++L +K+RP LI + + Sbjct: 3 IEQIVAQLKQNDVVAYPTEAVFGLGCNPNSESAVQKLLVLKQRPIEKGLILVAPHLDFLL 62 Query: 72 KH---ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKL 127 A+ D + + P+T V+ S+T T + R K+L Sbjct: 63 PFIETANFDEQHWQRLQTQYDRPITWVVPAKSST--PKFLTGQFDSIAVRLCQHDAVKQL 120 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 E G L SAN + + + + + ++ P ++D + S I ++ + Sbjct: 121 CEQAGFALTSTSANLTTLPPCRSAQEV-RAQFGEDFP-VLDLPVGSATNPSEIRDLFTHQ 178 Query: 188 KVR 190 R Sbjct: 179 LFR 181 >gi|293192668|ref|ZP_06609622.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces odontolyticus F0309] gi|292820175|gb|EFF79172.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces odontolyticus F0309] Length = 205 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 39/204 (19%), Positives = 77/204 (37%), Gaps = 8/204 (3%) Query: 1 MQIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56 M + + N + + L+ G IA+PT++ Y +A + N + + I+K Sbjct: 1 MSYVEMHPENPQARLVNTVVDLLERGGTIALPTDSGYAIATKAGNKAGMDTIRAIRKLDD 60 Query: 57 MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 + + + + +D K PGP T +L L+ T Sbjct: 61 KHNFSLLCHSFAQLGELVIIDNHEFRTMKALTPGPYTFILRGTKEVPRIMLNKKKH-TVG 119 Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R+P T+ ++E G PLA + G+ + I ++ L++ G + Sbjct: 120 VRIPDHVITQAIVEALGEPLACSTLIMPGEEEPLTDGFDVDDRIGHQVDLVVVG-PVGVA 178 Query: 176 LESTIVNVQCEKKVRILRPGGLEI 199 +T+++ V + R G +I Sbjct: 179 EPTTVIDFAGGDAV-VARVGAGDI 201 >gi|114325403|gb|AAH08984.3| YRDC protein [Homo sapiens] Length = 292 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 61/195 (31%), Positives = 97/195 (49%), Gaps = 12/195 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ALR A L AG +A+PT+T+YGLA + A+R +Y +K R PL + ++ Sbjct: 80 TEALRAAVAELRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVA 139 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 V ++ V + L K PGP+TLV++ + +++ R+P F + L Sbjct: 140 DVYRYCRVR-VPEGLLKDLLPGPVTLVMER--SEELNKDLNPFTPLVGIRIPDHAFMQDL 196 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE------STIV 181 + + PLA+ SAN S Q S NV+ + ++ L+IDGG G ST+V Sbjct: 197 AQMFEGPLALTSANLSSQASSLNVEE--FQDLWPQLSLVIDGGQIGDGQSPECRLGSTVV 254 Query: 182 NVQCEKKVRILRPGG 196 ++ K I+RPG Sbjct: 255 DLSVPGKFGIIRPGC 269 >gi|297197313|ref|ZP_06914710.1| translation factor SUA5 [Streptomyces sviceus ATCC 29083] gi|197714895|gb|EDY58929.1| translation factor SUA5 [Streptomyces sviceus ATCC 29083] Length = 200 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 34/196 (17%), Positives = 66/196 (33%), Gaps = 4/196 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + E + + IA PT++ Y L + I R+ I+ + D + Sbjct: 8 PRTISQIAESIRSDALIAYPTDSCYALGCRLGSRDGIDRIRTIRHLDDRHHFTLVCQDFA 67 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + VD K PG T +L L KT R+P T+ L Sbjct: 68 QLGQFVRVDKDVFRAIKASTPGSYTFILPATKEVP-RMLQHPKKKTVGVRIPDHVVTQAL 126 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + + + + + ++D G +T+++ Sbjct: 127 LAELGEPLLSSTLLLPDEEEPMTQGWEIKDRLDHVLDGVVDSGDCGT-EPTTVIDFSG-G 184 Query: 188 KVRILRPGGLEIETLK 203 + I+R G + + Sbjct: 185 EAEIVRHGAGDTSRFE 200 >gi|198433752|ref|XP_002131934.1| PREDICTED: similar to ischemia/reperfusion inducible protein isoform 2 [Ciona intestinalis] gi|198433756|ref|XP_002131919.1| PREDICTED: similar to ischemia/reperfusion inducible protein isoform 1 [Ciona intestinalis] Length = 293 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 53/232 (22%), Positives = 92/232 (39%), Gaps = 41/232 (17%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 + + + L G +A+PT+T+YG+A +++ A+ +LYEIK R + P+ V D+ Sbjct: 53 NEDVIESCVRILHRGGIVALPTDTLYGVACLAQSTEAVEKLYEIKARNPLKPVAICVGDL 112 Query: 68 SMVKKHASVDP-------------------------LSLHLAKLFWPGPLTLVLDLLSTT 102 V + + L + PGP+T+V + + Sbjct: 113 YKVCQWTRFPQGLIQSVSKTLGLEDQLDCQRPSSPGVLYGLLEDLLPGPVTIVTERSPS- 171 Query: 103 DIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICK 161 ++ RVP F K L PLA+ SAN SG+ S ++ S+ Sbjct: 172 -LNNTLNPKTSLVGIRVPDHKFIKDLTNRLREPLALTSANVSGEESSLRIED--FRSLWP 228 Query: 162 EIPLIIDGGISKI----------GLESTIVNVQCEK-KVRILRPGGLEIETL 202 ++ ++D G ST+V + + +ILRPG T+ Sbjct: 229 KLDAVVDDGEVGTRYVNKTLQYAKEGSTVVQILNDGVSFKILRPGCAYENTV 280 >gi|332304414|ref|YP_004432265.1| SUA5/yciO/yrdC domain protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332171743|gb|AEE20997.1| SUA5/yciO/yrdC domain protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 187 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 45/175 (25%), Positives = 72/175 (41%), Gaps = 8/175 (4%) Query: 21 AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80 AG A PTE V+GL D N A+ +L +K+R LI + S + + + D + Sbjct: 16 AGKVFAYPTEAVFGLGCDPDNEQAVSKLLLLKERDVSKGLILVADNYSQLLPYVNDDAIK 75 Query: 81 L-HLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGHPLA 136 + ++F WPGP+T +L T + + RV K L PL Sbjct: 76 MTKRTEIFSSWPGPVTWLLPKAKNAPA--WVTGDSEFIAVRVSAHPVIKDLCSRVNKPLI 133 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 SAN +G N + S ++ LI +G + S I++ + +R Sbjct: 134 STSANTAGNPPALNSDEV-KSYFSDQVVLI-EGSLGGSLSPSKILHGHSGQTIRD 186 >gi|145639411|ref|ZP_01795016.1| predicted translation factor SUA5 [Haemophilus influenzae PittII] gi|145271458|gb|EDK11370.1| predicted translation factor SUA5 [Haemophilus influenzae PittII] Length = 183 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 71/182 (39%), Gaps = 8/182 (4%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 + + L +A PTE V+GL + ++ +A+++L ++K+RP LI + + Sbjct: 4 EQIAKALRQNQVVAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRP 63 Query: 73 HAS---VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLI 128 ++ L + + P T ++ STT T + R K L Sbjct: 64 FVDFEKINDEQLSRLQGKYERPTTWIVPSKSTT--PHFLTGKFDSIAVRLCDHPSVKALC 121 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E G L SAN +G+ + + P ++D + S I +++ + Sbjct: 122 ELTGFALTSTSANLTGEPPCRIADEV-RLQFGVDFP-VLDEIVGDARNPSEIRDLRTNQL 179 Query: 189 VR 190 R Sbjct: 180 FR 181 >gi|269216191|ref|ZP_06160045.1| Sua5/YciO/YrdC/YwlC family protein [Slackia exigua ATCC 700122] gi|269130450|gb|EEZ61528.1| Sua5/YciO/YrdC/YwlC family protein [Slackia exigua ATCC 700122] Length = 220 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 49/188 (26%), Positives = 81/188 (43%), Gaps = 6/188 (3%) Query: 21 AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP-L 79 G + PT+TVYG+ V + +Y IK+R A + V + + ++ P Sbjct: 30 EGKAVVFPTDTVYGIGVSVAHARTPDLIYGIKRRDAGKAIPWLVGSMDDLMRYGRDVPSY 89 Query: 80 SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIP 138 + LA FWPG LTL++ ++ + P T R+P + +I G P+A Sbjct: 90 ASALAHAFWPGALTLIV--RASAAVPPAFVGTGGTIALRMPDDEWALAVIRAVGCPMATS 147 Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLE 198 SAN + S+ + + I ++ G STI + RILR GG+ Sbjct: 148 SANIQAHTPPHLRSEV-SAEVRSGVAACIGDERARSGRSSTIADCTGA-AFRILRAGGVS 205 Query: 199 IETLKRAI 206 E ++ A+ Sbjct: 206 EEAMRDAV 213 >gi|261365262|ref|ZP_05978145.1| protein RimN [Neisseria mucosa ATCC 25996] gi|288566351|gb|EFC87911.1| protein RimN [Neisseria mucosa ATCC 25996] Length = 189 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 43/192 (22%), Positives = 77/192 (40%), Gaps = 5/192 (2%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I ++ L K L G +A PTE+ YG+ P A+ RL +KKRP + Sbjct: 1 MLFPRILSASTLCKLQSHLKKGGLVAYPTESCYGIGCIPTLPKALNRLIHLKKRPQHKGM 60 Query: 61 ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I + + ++ ++ + + WP P T +L + + L RV Sbjct: 61 IVIGNQLEQLQPLLKRSSENIQTMLRNEWPAPKTFLLPAAADV-LPALRGKGRSKLAVRV 119 Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P ++L + PL S NR+G+ + + + ++ G I K S Sbjct: 120 PAHAGARRLCQALKTPLVSTSCNRAGKRACRTEREVRRQF--GRNIWVVSGLIGKQKSPS 177 Query: 179 TIVNVQCEKKVR 190 I++ + ++R Sbjct: 178 QIIDGETGVRLR 189 >gi|183602495|ref|ZP_02963860.1| conserved protein in the Sua5/YciO/YrdC family [Bifidobacterium animalis subsp. lactis HN019] gi|219683538|ref|YP_002469921.1| Sua5/YciO/YrdC family protein [Bifidobacterium animalis subsp. lactis AD011] gi|241190569|ref|YP_002967963.1| Sua5/YciO/YrdC family protein [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195975|ref|YP_002969530.1| Sua5/YciO/YrdC family protein [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218136|gb|EDT88782.1| conserved protein in the Sua5/YciO/YrdC family [Bifidobacterium animalis subsp. lactis HN019] gi|219621188|gb|ACL29345.1| Sua5/YciO/YrdC family protein [Bifidobacterium animalis subsp. lactis AD011] gi|240248961|gb|ACS45901.1| Sua5/YciO/YrdC family protein [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250529|gb|ACS47468.1| Sua5/YciO/YrdC family protein [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793556|gb|ADG33091.1| Sua5/YciO/YrdC family protein [Bifidobacterium animalis subsp. lactis V9] Length = 222 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 65/218 (29%), Positives = 99/218 (45%), Gaps = 6/218 (2%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M + D L A + G + IPT+TVYG+A D N AI R+Y K RPA L Sbjct: 1 MADVRSADEQTLADARRIIADGGLVVIPTDTVYGIACDPCNAAAIARIYAAKHRPADKAL 60 Query: 61 ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDI--HPLSTANLKTACF 117 + D+S++ K P L LA+ F PG + + + + + + +T Sbjct: 61 QVIMPDLSVLPKLGLALPTPLDALARRFLPGAFSPIAVADDDSPLLTVRVDDSGARTQGI 120 Query: 118 RVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 RVP + P+A SANRSG S V +++ + + L IDGG + Sbjct: 121 RVPDSEVTLRVLRAIGPVAASSANRSGNESAQTVDEAVAA-LGDSVDLYIDGGPTVSHTA 179 Query: 178 STIVNVQCEKK--VRILRPGGLEIETLKRAISVELEYC 213 ST+V + + ILR G LE + ++RA+ E + Sbjct: 180 STVVAADPDAPDGIVILREGRLEADAVRRAVREEARHG 217 >gi|289178307|gb|ADC85553.1| SUA5 protein [Bifidobacterium animalis subsp. lactis BB-12] Length = 231 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 65/218 (29%), Positives = 99/218 (45%), Gaps = 6/218 (2%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M + D L A + G + IPT+TVYG+A D N AI R+Y K RPA L Sbjct: 10 MADVRSADEQTLADARRIIADGGLVVIPTDTVYGIACDPCNAAAIARIYAAKHRPADKAL 69 Query: 61 ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDI--HPLSTANLKTACF 117 + D+S++ K P L LA+ F PG + + + + + + +T Sbjct: 70 QVIMPDLSVLPKLGLALPTPLDALARRFLPGAFSPIAVADDDSPLLTVRVDDSGARTQGI 129 Query: 118 RVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 RVP + P+A SANRSG S V +++ + + L IDGG + Sbjct: 130 RVPDSEVTLRVLRAIGPVAASSANRSGNESAQTVDEAVAA-LGDSVDLYIDGGPTVSHTA 188 Query: 178 STIVNVQCEKK--VRILRPGGLEIETLKRAISVELEYC 213 ST+V + + ILR G LE + ++RA+ E + Sbjct: 189 STVVAADPDAPDGIVILREGRLEADAVRRAVREEARHG 226 >gi|123243915|emb|CAM16101.1| yrdC domain containing (E.coli) [Mus musculus] Length = 263 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 59/195 (30%), Positives = 99/195 (50%), Gaps = 12/195 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ALR A L AG +A+PT+T+YGLA + + A+ +Y +K R PL + ++ Sbjct: 51 TEALRAAVAELRAGAVVAVPTDTLYGLACSASSSAALSCVYRLKGRSEAKPLAVCLGRVA 110 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 V ++ V + L + +PGP+TLV++ + +++ + R+P F L Sbjct: 111 DVYRYCQVR-VPRELLEDLFPGPVTLVMER--SEELNKDLNPFTRLVGIRIPDHAFMLDL 167 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI------SKIGLESTIV 181 + +G PLA+ SAN S Q S +V+ + + L+IDGG + L ST+V Sbjct: 168 AQMFGGPLALTSANLSSQASSLSVEE--FQDLWPHLSLVIDGGPIGDSQSPECRLGSTVV 225 Query: 182 NVQCEKKVRILRPGG 196 ++ K I+RPG Sbjct: 226 DLSVPGKFGIIRPGC 240 >gi|167525667|ref|XP_001747168.1| hypothetical protein [Monosiga brevicollis MX1] gi|163774463|gb|EDQ88092.1| predicted protein [Monosiga brevicollis MX1] Length = 300 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 48/189 (25%), Positives = 88/189 (46%), Gaps = 8/189 (4%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 L +A+PT+T+YG+A +++ TA+++LY+IK+R P+ V ++ V Sbjct: 85 DHVVPALQREAVVALPTDTIYGIAAVAQSATAVQKLYDIKERDPAKPIAICVPKVADVYT 144 Query: 73 HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY 131 +A V + + PG +T+V ++PL + RV T+ ++ Sbjct: 145 YAHVT-VPDDVLHQLLPGAVTVVFKRKPA--LNPLLNPDTDLIGIRVTNHSLTQAIVAGL 201 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQCEKKV 189 P+A+ SAN++G S + + ++DGG G L ST+V++ + Sbjct: 202 QAPIALTSANKAGAASCVQADE--FEHLWPALGCVVDGGRLGTGSRLGSTVVDLSKPQTF 259 Query: 190 RILRPGGLE 198 +LR G E Sbjct: 260 ALLRDGDAE 268 >gi|319638767|ref|ZP_07993526.1| hypothetical protein HMPREF0604_01150 [Neisseria mucosa C102] gi|317400008|gb|EFV80670.1| hypothetical protein HMPREF0604_01150 [Neisseria mucosa C102] Length = 212 Score = 133 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 43/192 (22%), Positives = 75/192 (39%), Gaps = 5/192 (2%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I + A R+ L G +A PTE+ YGL P A+ +L +KKRP + Sbjct: 24 MMFPRILSAAAQRRLQAHLKKGGLVAYPTESCYGLGCIPTLPKALNQLIHLKKRPQHKGM 83 Query: 61 ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I + ++ ++ + + WP P T +L + L RV Sbjct: 84 IVIGHSLEQLQPLLQRPSENIQTMLREAWPAPKTFLLPAGKKV-LPSLRGKRRSKLAVRV 142 Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P ++L + PL S NR+G+ + + + ++ G I K S Sbjct: 143 PAHAGARRLCQVLEMPLVSTSCNRAGKRACKTEREVRRQF--GRKVWVVGGLIGKQKTPS 200 Query: 179 TIVNVQCEKKVR 190 I++ + ++R Sbjct: 201 QIIDGETGARLR 212 >gi|296126570|ref|YP_003633822.1| Sua5/YciO/YrdC/YwlC family protein [Brachyspira murdochii DSM 12563] gi|296018386|gb|ADG71623.1| Sua5/YciO/YrdC/YwlC family protein [Brachyspira murdochii DSM 12563] Length = 198 Score = 133 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 56/198 (28%), Positives = 92/198 (46%), Gaps = 12/198 (6%) Query: 4 MSITDSNALRKACE----FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 + +++ A + ++ G + PT+TVYG+ D+ N A+ R+Y+IK+R P Sbjct: 5 LDKNSEESIKYAADEASKVINEGGIVVSPTDTVYGMLADAFNKEAVERIYQIKEREKNKP 64 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 + + + + K+ S + + K PG LT ++ L + + L N T RV Sbjct: 65 FLILIKN-AEYSKYFSQMEIP-DIVKKNIPGELTFIMPLSDSLKENFLYLKN--TVALRV 120 Query: 120 PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 P +LI PLA PSAN SG I + L+ + LII+ GI + + ST Sbjct: 121 PKDKYMQLILNNTKPLAAPSANPSGAGEILDGNK-LAELYEDKADLIINAGIIENKMPST 179 Query: 180 IVNVQCEKKVRILRPGGL 197 + N +ILR G + Sbjct: 180 LYNCIEN---KILRQGSV 194 >gi|317050743|ref|YP_004111859.1| Sua5/YciO/YrdC/YwlC family protein [Desulfurispirillum indicum S5] gi|316945827|gb|ADU65303.1| Sua5/YciO/YrdC/YwlC family protein [Desulfurispirillum indicum S5] Length = 204 Score = 133 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 43/196 (21%), Positives = 79/196 (40%), Gaps = 7/196 (3%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + L + + A + PTET+YGL + + ++++K RP PL + Sbjct: 12 SQLLHIVKTVKAESLLCFPTETLYGLGGLATSQKVADEVFQVKGRPQGAPLPVLFAHRQQ 71 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129 V+++ + L + FWPGPLT+ L + R+ K + Sbjct: 72 VERYLEIPAELEVLLEHFWPGPLTVALT--ARVPFPSGVLDGKGRVAARITSHRLLKTVI 129 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 Y P+ SANRSG+ + + + + II S + ST++ + ++ Sbjct: 130 DYAGPMIATSANRSGEAPAMSAEAC----LHLQPDAIIMDDPSTSSVPSTVIGW-DDGEL 184 Query: 190 RILRPGGLEIETLKRA 205 R+ R G + L+ Sbjct: 185 RVYREGVIPEAQLRAV 200 >gi|23274116|gb|AAH23823.1| YrdC domain containing (E.coli) [Mus musculus] Length = 263 Score = 133 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 59/195 (30%), Positives = 99/195 (50%), Gaps = 12/195 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ALR A L AG +A+PT+T+YGLA + + A+ +Y +K R PL + ++ Sbjct: 51 TEALRAAVAELRAGAVVAVPTDTLYGLACSASSSAALSCVYRLKGRSEAKPLAVCLGRVA 110 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 V ++ V + L + +PGP+TLV++ + +++ + R+P F L Sbjct: 111 DVYRYCQVR-VPRELLEDLFPGPVTLVMER--SEELNKDLNPFTRLVGIRIPDHAFMLDL 167 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI------SKIGLESTIV 181 + +G PLA+ SAN S Q S +V+ + + L+IDGG + L ST+V Sbjct: 168 AQMFGGPLALTSANLSSQASSLSVEE--FQDLWPHLSLVIDGGPIGDSQSPECRLGSTVV 225 Query: 182 NVQCEKKVRILRPGG 196 ++ K I+RPG Sbjct: 226 DLSVPGKFGIIRPGC 240 >gi|32491246|ref|NP_871500.1| hypothetical protein WGLp497 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|81741613|sp|Q8D257|RIMN_WIGBR RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|25166453|dbj|BAC24643.1| yrdC [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 194 Score = 133 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 54/186 (29%), Positives = 85/186 (45%), Gaps = 11/186 (5%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 K L +A PTE+++GL D + +A+ +L +KKR I ++IS + + Sbjct: 16 KIINALREEEVVAYPTESMFGLGCDPDSISAVNKLIYLKKRKINKGFIIVAANISQLNNY 75 Query: 74 ASVDPLSL-HLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIE 129 LS +L K+F WPG +T ++ DI N RV F KK+ Sbjct: 76 IDCTSLSKNNLNKIFCTWPGFITWLMP--PKKDIPCWLIGNNSLIAVRVSNFFPIKKICN 133 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 +G P+ SAN SG+I N+K + + +I +I+D I K S I + Sbjct: 134 IFGKPIISTSANLSGEIPAKNIKE-IKHKLGSKI-IILDHPIGKYSNPSEI---RNGINY 188 Query: 190 RILRPG 195 +I+R G Sbjct: 189 KIIRKG 194 >gi|295696805|ref|YP_003590043.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus tusciae DSM 2912] gi|295412407|gb|ADG06899.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus tusciae DSM 2912] Length = 221 Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats. Identities = 46/203 (22%), Positives = 80/203 (39%), Gaps = 8/203 (3%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 +D + KA E L G +P +TVYG + + R+Y IK+R P + Sbjct: 13 ASDEEGIAKAVEVLSVGGVAILPADTVYGFFASAVQREPVERVYRIKQREKRKPF-VIYT 71 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124 + V+ V+ + L +L WP L+L+L I T +T Sbjct: 72 NEKKVRDIVEVNETAERLIELVWPKALSLILPKRDI--IPDWFTNFQRTLAVMTAQNRII 129 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII-DGGISKIGLESTIVNV 183 ++I P+ + N SG+ + + ++ ++ ++I D I ST+V+ Sbjct: 130 SRVIAEVDEPIFGTTCNMSGEPELKKAEEVIR--FIDQVDMMIADDNIPIYNKPSTMVDC 187 Query: 184 QCEKKVRILRPGGLEIETLKRAI 206 +I R L + LK I Sbjct: 188 TVA-PPKIARLSSLSYDELKEII 209 >gi|328886330|emb|CCA59569.1| Sua5 YciO YrdC YwlC family protein [Streptomyces venezuelae ATCC 10712] Length = 206 Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats. Identities = 32/189 (16%), Positives = 63/189 (33%), Gaps = 4/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + + G +A PT++ Y L + I R+ I+ + + + Sbjct: 14 PRTIGTVADSIRNGALVAYPTDSCYALGTRLGSRDGISRIRTIRDLDDRHHFTLMCQNFA 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKL 127 + + +D K PG T +L L KT R+P + L Sbjct: 74 QLGQLVHIDNDVFRAVKAATPGAYTFILPATKEVP-RQLLHPKKKTVGVRIPDHVVTQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + + + + ++ ++D G +T+V+ + Sbjct: 133 LADLGEPLLSSTLLLPDETEPLTQGWEIKERLDHQVDAVLDSGDCGT-EPTTVVDFSSGE 191 Query: 188 KVRILRPGG 196 ILR G Sbjct: 192 P-EILRRGA 199 >gi|320093762|ref|ZP_08025611.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 178 str. F0338] gi|319979308|gb|EFW10802.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 178 str. F0338] Length = 205 Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats. Identities = 33/189 (17%), Positives = 69/189 (36%), Gaps = 4/189 (2%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + K L G +A+PT++ Y +A N + + ++++ + S + + Sbjct: 16 VDKVVGLLREGGVVALPTDSGYAIACRLGNKAGMDTIRDVRRLDDKHNFSLLCSSFAQLG 75 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 + +D K PGP T +L T R+P T+ ++ Sbjct: 76 ELVILDNHEFRTIKALTPGPYTFILRGTKEVP-RMTLNKKKHTVGVRLPDHAITQAVVSA 134 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G PL + G+ + SI + L++ G + +T+V+ Sbjct: 135 LGEPLLCSTLILPGETEPLTDGREVDESIGSRVDLVVVGPVGDA-EPTTVVDFTS-GTAE 192 Query: 191 ILRPGGLEI 199 ++R G ++ Sbjct: 193 VVRRGAGDV 201 >gi|247494089|ref|NP_705794.2| yrdC domain-containing protein, mitochondrial precursor [Mus musculus] gi|123794224|sp|Q3U5F4|YRDC_MOUSE RecName: Full=YrdC domain-containing protein, mitochondrial; AltName: Full=Ischemia/reperfusion-inducible protein; Short=mIRIP; Flags: Precursor gi|74146564|dbj|BAE32125.1| unnamed protein product [Mus musculus] Length = 280 Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats. Identities = 59/195 (30%), Positives = 99/195 (50%), Gaps = 12/195 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ALR A L AG +A+PT+T+YGLA + + A+ +Y +K R PL + ++ Sbjct: 68 TEALRAAVAELRAGAVVAVPTDTLYGLACSASSSAALSCVYRLKGRSEAKPLAVCLGRVA 127 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 V ++ V + L + +PGP+TLV++ + +++ + R+P F L Sbjct: 128 DVYRYCQVR-VPRELLEDLFPGPVTLVMER--SEELNKDLNPFTRLVGIRIPDHAFMLDL 184 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI------SKIGLESTIV 181 + +G PLA+ SAN S Q S +V+ + + L+IDGG + L ST+V Sbjct: 185 AQMFGGPLALTSANLSSQASSLSVEE--FQDLWPHLSLVIDGGPIGDSQSPECRLGSTVV 242 Query: 182 NVQCEKKVRILRPGG 196 ++ K I+RPG Sbjct: 243 DLSVPGKFGIIRPGC 257 >gi|28278078|gb|AAH45238.1| LOC398509 protein [Xenopus laevis] Length = 188 Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats. Identities = 46/174 (26%), Positives = 84/174 (48%), Gaps = 12/174 (6%) Query: 30 ETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWP 89 +T+YG+A ++N +I +Y +K R PL V ++ + ++ V+ + L + P Sbjct: 1 DTIYGIACLAQNSQSISNIYNVKGRNGTKPLAICVGNVEDIYRYCRVN-VPDQLLRDLLP 59 Query: 90 GPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISI 148 GP+TLV++ + ++ R+P F ++L E PLA+ SAN S Q S Sbjct: 60 GPVTLVMER--SDRLNKELNPFTSLVGVRIPDHAFIRQLAEVCSEPLALTSANISSQEST 117 Query: 149 TNVKHILSSSICKEIPLIIDGGI------SKIGLESTIVNVQCEKKVRILRPGG 196 V+ + ++ L++DGG + L ST+V++ K ++R G Sbjct: 118 LTVEE--FRDLWPKLSLVVDGGPIGEHSSPECRLGSTVVDLSVPGKFTVIRDGC 169 >gi|301155130|emb|CBW14594.1| predicted ribosome maturation factor [Haemophilus parainfluenzae T3T1] Length = 183 Score = 133 bits (335), Expect = 5e-29, Method: Composition-based stats. Identities = 38/183 (20%), Positives = 73/183 (39%), Gaps = 8/183 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++ L +A PTE V+GL + + +A+R+L ++K+RP LI + ++ Sbjct: 3 VQQIAARLMQDEVVAYPTEAVFGLGCNPLSESAVRKLLDLKQRPIEKGLILVAPSLHFLQ 62 Query: 72 KHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKL 127 L + + P+T V+ + ++ T + R K L Sbjct: 63 PFVDFSRLSNEQLARLQAQYEHPITWVVP--AKAEVPHFLTGQFDSIAVRLCTHPAVKAL 120 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ET G L SAN +G + + S + P ++D + + S I ++ + Sbjct: 121 CETTGFALTSTSANLTGLSPCRSADAV-RSQFGADFP-VLDEAVGQAQNPSEIRDLLTNQ 178 Query: 188 KVR 190 R Sbjct: 179 LFR 181 >gi|315634938|ref|ZP_07890220.1| SUA5/YciO/yrdC family domain protein [Aggregatibacter segnis ATCC 33393] gi|315476490|gb|EFU67240.1| SUA5/YciO/yrdC family domain protein [Aggregatibacter segnis ATCC 33393] Length = 183 Score = 133 bits (335), Expect = 5e-29, Method: Composition-based stats. Identities = 40/187 (21%), Positives = 69/187 (36%), Gaps = 16/187 (8%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++ L +A PTE V+GL + + +A+ L +K+RP LI + + Sbjct: 3 LQEIVNHLKNQQVVAYPTEAVFGLGCNPNSQSAVENLLVLKQRPMSKGLILIAPSLDFLL 62 Query: 72 KHASVDPLSLHLAKLFW-------PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 L + W P T V+ +TT T + + R+ Sbjct: 63 PFMDES----RLMEEHWQRLTTQYDRPTTWVVPAKTTT--PKFLTGDFNSIAVRISQHPA 116 Query: 125 KK-LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 K L E G L SAN +GQ + + + + P ++D + S I ++ Sbjct: 117 VKLLCEQAGFALTSTSANLTGQPPCRTAQEV-AQQFGTDFP-VLDMSVGGAVNPSEIRDI 174 Query: 184 QCEKKVR 190 + R Sbjct: 175 FTNQVFR 181 >gi|52424187|ref|YP_087324.1| SUA5 protein [Mannheimia succiniciproducens MBEL55E] gi|81387682|sp|Q65WC1|RIMN_MANSM RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|52306239|gb|AAU36739.1| SUA5 protein [Mannheimia succiniciproducens MBEL55E] Length = 183 Score = 132 bits (334), Expect = 5e-29, Method: Composition-based stats. Identities = 39/184 (21%), Positives = 66/184 (35%), Gaps = 8/184 (4%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 L + E L +A PTE V+GL + + +A+ +L +K+RP LI + ++ Sbjct: 2 ELAQIVERLKKNEVVAYPTEAVFGLGCNPNSKSAVEKLLILKQRPVEKGLILVAHKLDLL 61 Query: 71 KKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKK 126 L L + P T V+ + + T + R + Sbjct: 62 LPFIDESRLKQSHWQLLTQQYDCPTTWVVP--AKLSVPKFITGQFDSVAVRLCTHPAVAQ 119 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L E G L SAN SG + + S E ++D + S I ++ Sbjct: 120 LCEQTGFALTSTSANLSGLPPCKTAQQVRSQF--GEFFPVLDMAVGNAVNPSEIRDIFSR 177 Query: 187 KKVR 190 + R Sbjct: 178 QIFR 181 >gi|59802252|ref|YP_208964.1| hypothetical protein NGO1940 [Neisseria gonorrhoeae FA 1090] gi|194099801|ref|YP_002002936.1| hypothetical protein NGK_2311 [Neisseria gonorrhoeae NCCP11945] gi|240013077|ref|ZP_04719990.1| hypothetical protein NgonD_00200 [Neisseria gonorrhoeae DGI18] gi|240122267|ref|ZP_04735229.1| hypothetical protein NgonPI_10985 [Neisseria gonorrhoeae PID24-1] gi|268597971|ref|ZP_06132138.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268685513|ref|ZP_06152375.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] gi|293398025|ref|ZP_06642231.1| translation factor [Neisseria gonorrhoeae F62] gi|59719147|gb|AAW90552.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090] gi|193935091|gb|ACF30915.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945] gi|268551759|gb|EEZ46778.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268625797|gb|EEZ58197.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] gi|291611971|gb|EFF41040.1| translation factor [Neisseria gonorrhoeae F62] Length = 200 Score = 132 bits (334), Expect = 5e-29, Method: Composition-based stats. Identities = 46/193 (23%), Positives = 85/193 (44%), Gaps = 7/193 (3%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I ++A RK +L G +A PTE+ YGL A+ +L +KKRP + Sbjct: 12 MLFSRIIAASAQRKLSVYLKKGGLVAYPTESCYGLGCLPTLAKALGKLAHLKKRPQHKGM 71 Query: 61 ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT-ACFR 118 I + + ++ + ++ + + WP P T +L L+ + + P ++ R Sbjct: 72 IVIGNQLEQLQPLLQMPSENIQTMLRNEWPAPKTFLL--LAKSGVLPALRGKRRSKLAVR 129 Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 VP ++L + G PL S NR+G+ + + + I+ G I + Sbjct: 130 VPDHTGARRLCQALGMPLVSTSCNRAGKRACRTEREVRRQF--GRDVWIVGGRIGRQKSP 187 Query: 178 STIVNVQCEKKVR 190 S I++ + K++R Sbjct: 188 SQIIDGETGKRLR 200 >gi|282857672|ref|ZP_06266885.1| SUA5 protein [Pyramidobacter piscolens W5455] gi|282584496|gb|EFB89851.1| SUA5 protein [Pyramidobacter piscolens W5455] Length = 175 Score = 132 bits (334), Expect = 5e-29, Method: Composition-based stats. Identities = 52/180 (28%), Positives = 88/180 (48%), Gaps = 7/180 (3%) Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200 NRSG+ S TN + + + I +I+D G ++G+EST+++V V +LRPGG+ +E Sbjct: 1 NRSGRPSPTNAQTV-AEDIGSAAAMILDAGECRVGVESTVLDVSAAVPV-LLRPGGVSME 58 Query: 201 TLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNI 260 L+ + E+ V +SPG HYAP +VR+ RF + + Sbjct: 59 ELREFLG-EVALPVGVNELKRSPGTRYRHYAPAVEVRVWEPGAAFAWPE-RFTYMGVAAS 116 Query: 261 ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 E + + + G + A LF+ ++ + G I P+ G+G A+ +R+ RAA Sbjct: 117 EK-LPARQIHFDG-FEAYAHGLFSALRELEKDGLP-IVAQWPPSGGIGRALRDRISRAAG 173 >gi|255065428|ref|ZP_05317283.1| protein RimN [Neisseria sicca ATCC 29256] gi|255050253|gb|EET45717.1| protein RimN [Neisseria sicca ATCC 29256] Length = 199 Score = 132 bits (334), Expect = 5e-29, Method: Composition-based stats. Identities = 43/192 (22%), Positives = 76/192 (39%), Gaps = 5/192 (2%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I ++ LRK L G +A PTE+ YG+ P A+ RL +KKRP + Sbjct: 11 MLFPRILSASTLRKLQSHLKKGGLVAYPTESCYGIGCIPTLPKALNRLIHLKKRPQHKGM 70 Query: 61 ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I + + ++ ++ + + WP P T +L + + L RV Sbjct: 71 IVIGNQLEQLQPLLKRSSENIQTMLRNEWPAPKTFLLPAAADV-LPALRGKGRSKLAVRV 129 Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P ++L L S NR+G+ + + + ++ G I K S Sbjct: 130 PAHAGARRLCRALKTSLVSTSCNRAGKRACKTEREVRRQF--GRDVWVVGGLIGKQKSPS 187 Query: 179 TIVNVQCEKKVR 190 I++ + ++R Sbjct: 188 QIIDGETGVRLR 199 >gi|239999974|ref|ZP_04719898.1| hypothetical protein Ngon3_10911 [Neisseria gonorrhoeae 35/02] gi|240017646|ref|ZP_04724186.1| hypothetical protein NgonFA_10873 [Neisseria gonorrhoeae FA6140] gi|240114151|ref|ZP_04728641.1| hypothetical protein NgonM_11394 [Neisseria gonorrhoeae MS11] gi|240116791|ref|ZP_04730853.1| hypothetical protein NgonPID1_11236 [Neisseria gonorrhoeae PID18] gi|240122444|ref|ZP_04735400.1| hypothetical protein NgonP_00611 [Neisseria gonorrhoeae PID332] gi|240126706|ref|ZP_04739592.1| hypothetical protein NgonSK_10938 [Neisseria gonorrhoeae SK-92-679] gi|254493456|ref|ZP_05106627.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|260441583|ref|ZP_05795399.1| hypothetical protein NgonDG_10945 [Neisseria gonorrhoeae DGI2] gi|268595781|ref|ZP_06129948.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268600226|ref|ZP_06134393.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268602466|ref|ZP_06136633.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|268604733|ref|ZP_06138900.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268681032|ref|ZP_06147894.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268685287|ref|ZP_06152149.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|291044953|ref|ZP_06570662.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|226512496|gb|EEH61841.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|268549170|gb|EEZ44588.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268584357|gb|EEZ49033.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268586597|gb|EEZ51273.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|268588864|gb|EEZ53540.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268621316|gb|EEZ53716.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268625571|gb|EEZ57971.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|291011847|gb|EFE03843.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|317165270|gb|ADV08811.1| hypothetical protein NGTW08_1856 [Neisseria gonorrhoeae TCDC-NG08107] Length = 200 Score = 132 bits (334), Expect = 5e-29, Method: Composition-based stats. Identities = 46/193 (23%), Positives = 85/193 (44%), Gaps = 7/193 (3%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I ++A RK +L G +A PTE+ YGL A+ +L +KKRP + Sbjct: 12 MLFSRIIAASAQRKLSVYLKKGGLVAYPTESCYGLGCLPTLAKALGKLAHLKKRPQHKGM 71 Query: 61 ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT-ACFR 118 I + + ++ + ++ + + WP P T +L L+ + + P ++ R Sbjct: 72 IVIGNQLEQLQPLLQMPFENIQTMLRNEWPAPKTFLL--LAKSGVLPALRGKRRSKLAVR 129 Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 VP ++L + G PL S NR+G+ + + + I+ G I + Sbjct: 130 VPDHTGARRLCQALGMPLVSTSCNRAGKRACRTEREVRRQF--GRDVWIVGGRIGRQKSP 187 Query: 178 STIVNVQCEKKVR 190 S I++ + K++R Sbjct: 188 SQIIDGETGKRLR 200 >gi|154508878|ref|ZP_02044520.1| hypothetical protein ACTODO_01389 [Actinomyces odontolyticus ATCC 17982] gi|153798512|gb|EDN80932.1| hypothetical protein ACTODO_01389 [Actinomyces odontolyticus ATCC 17982] Length = 205 Score = 132 bits (334), Expect = 5e-29, Method: Composition-based stats. Identities = 39/204 (19%), Positives = 77/204 (37%), Gaps = 8/204 (3%) Query: 1 MQIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56 M + + N + + L+ G IA+PT++ Y +A + N + + I+K Sbjct: 1 MSYVEMHPENPQARLVNTVVDLLERGGTIALPTDSGYAVATRAGNKAGMDTIRAIRKLDD 60 Query: 57 MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 + + + + +D K PGP T +L L+ T Sbjct: 61 KHNFSLLCHSFAQLGELVIIDNHEFRTMKALTPGPYTFILRGTKEVPRIMLNKKKH-TVG 119 Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R+P T+ ++E G PLA + G+ + I ++ L++ G + Sbjct: 120 VRIPDHVITQAIVEALGEPLACSTLIMPGEEEPLTDGFDVDDRIGHQVDLVVVG-PVGVA 178 Query: 176 LESTIVNVQCEKKVRILRPGGLEI 199 +T+++ V + R G +I Sbjct: 179 EPTTVIDFAGGDAV-VARVGAGDI 201 >gi|251793960|ref|YP_003008692.1| protein YrdC [Aggregatibacter aphrophilus NJ8700] gi|247535359|gb|ACS98605.1| protein YrdC [Aggregatibacter aphrophilus NJ8700] Length = 183 Score = 132 bits (334), Expect = 6e-29, Method: Composition-based stats. Identities = 40/187 (21%), Positives = 69/187 (36%), Gaps = 16/187 (8%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L++ L +A PTE V+GL + + +A+ L +K+RP LI + + Sbjct: 3 LQEIVNHLKNQQVVAYPTEAVFGLGCNPNSQSAVENLLVLKQRPMSKGLILIAPGLDFLL 62 Query: 72 KHASVDPLSLHLAKLFW-------PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 L + W P T V+ +TT T + + R+ Sbjct: 63 PFIDES----RLMEAHWQRLTTQYDRPTTWVVPAKTTT--PKFLTGDFDSIAMRISQHPA 116 Query: 125 KK-LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 K L E G L SAN +GQ + + + + P ++D + S I ++ Sbjct: 117 VKLLCEQAGFALTSTSANLTGQPPCRTAQEV-TQQFGTDFP-VLDMPVGDAVNPSEIRDI 174 Query: 184 QCEKKVR 190 + R Sbjct: 175 FTNQVFR 181 >gi|297153969|gb|ADI03681.1| hypothetical protein SBI_00560 [Streptomyces bingchenggensis BCW-1] Length = 206 Score = 132 bits (334), Expect = 6e-29, Method: Composition-based stats. Identities = 31/183 (16%), Positives = 63/183 (34%), Gaps = 4/183 (2%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 + + +G +A PT++ + L N I R+ I+ + + + + + Sbjct: 20 VADRIRSGALVAYPTDSCFALGCLMGNREGINRIRSIRNLDDRHHFTLVCQNFAQLGQFV 79 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133 +D K PG T +L L KT R+P + L+ G Sbjct: 80 HIDKDVFRAIKAATPGSYTFILPATKEVP-RQLPHPKKKTVGVRIPDHVVAQALLADLGE 138 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 PL + G+ + + + ++D G +T+++ + I+R Sbjct: 139 PLLSSTLLLPGEDEPMTQGWEIKDRLDHVVDAVVDSGDCGT-EPTTVIDFSS-GEAEIVR 196 Query: 194 PGG 196 G Sbjct: 197 RGA 199 >gi|291612767|ref|YP_003522924.1| SUA5/yciO/yrdC domain protein [Sideroxydans lithotrophicus ES-1] gi|291582879|gb|ADE10537.1| SUA5/yciO/yrdC domain protein [Sideroxydans lithotrophicus ES-1] Length = 185 Score = 132 bits (334), Expect = 6e-29, Method: Composition-based stats. Identities = 45/180 (25%), Positives = 70/180 (38%), Gaps = 6/180 (3%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 R+ +L G IA PTE+ YGL D N A+ RL ++K+RP LI S V + Sbjct: 9 RQLAAYLKRGGLIAYPTESCYGLGCDPANRAAVLRLLKLKRRPQRKGLILIASHYRQVAR 68 Query: 73 HAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 + + P + +T ++ + S+ T R+ F ++L + Sbjct: 69 YLQPLAPADQARLQHEGAQAVTYLMPVRSSA--PRWLRGTHDTLAVRLTAHPFARQLCRS 126 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 L SANRSGQ + ++ G + K STI K +R Sbjct: 127 ADSALVSTSANRSGQRPAKTYADC--RRLFGNKVWVLRGRVGKRKQPSTIRAWSDGKIIR 184 >gi|293390830|ref|ZP_06635164.1| protein YrdC [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951364|gb|EFE01483.1| protein YrdC [Aggregatibacter actinomycetemcomitans D7S-1] Length = 183 Score = 132 bits (334), Expect = 6e-29, Method: Composition-based stats. Identities = 41/183 (22%), Positives = 68/183 (37%), Gaps = 8/183 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L+ E L +A PTE V+GL + + +A+ L +K+RP LI + + Sbjct: 3 LQDIVEQLKRQHVVAYPTEAVFGLGCNPNSQSAMENLLVLKQRPVSKGLILIAPALDFLL 62 Query: 72 KHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-L 127 PL+ + P T V+ TT T + + R+ K L Sbjct: 63 PFIDERPLAELHWQRLTAQYARPTTWVVPAKKTT--PKFLTGDFDSIAVRISQHPAVKLL 120 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 E G L SAN SGQ + + + P +++ + S I ++ + Sbjct: 121 CEQAGFALTSTSANLSGQPPCRTAQEVTR-QFGADFP-VLEMPVGDAVNPSEIRDIFTNQ 178 Query: 188 KVR 190 R Sbjct: 179 IFR 181 >gi|240081874|ref|ZP_04726417.1| hypothetical protein NgonF_11291 [Neisseria gonorrhoeae FA19] gi|240127157|ref|ZP_04739818.1| hypothetical protein NgonS_00622 [Neisseria gonorrhoeae SK-93-1035] gi|212288270|sp|Q5F5I5|RIMN_NEIG1 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN Length = 189 Score = 132 bits (334), Expect = 6e-29, Method: Composition-based stats. Identities = 46/193 (23%), Positives = 85/193 (44%), Gaps = 7/193 (3%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I ++A RK +L G +A PTE+ YGL A+ +L +KKRP + Sbjct: 1 MLFSRIIAASAQRKLSVYLKKGGLVAYPTESCYGLGCLPTLAKALGKLAHLKKRPQHKGM 60 Query: 61 ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT-ACFR 118 I + + ++ + ++ + + WP P T +L L+ + + P ++ R Sbjct: 61 IVIGNQLEQLQPLLQMPSENIQTMLRNEWPAPKTFLL--LAKSGVLPALRGKRRSKLAVR 118 Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 VP ++L + G PL S NR+G+ + + + I+ G I + Sbjct: 119 VPDHTGARRLCQALGMPLVSTSCNRAGKRACRTEREVRRQF--GRDVWIVGGRIGRQKSP 176 Query: 178 STIVNVQCEKKVR 190 S I++ + K++R Sbjct: 177 SQIIDGETGKRLR 189 >gi|240119018|ref|ZP_04733080.1| hypothetical protein NgonPID_11272 [Neisseria gonorrhoeae PID1] Length = 189 Score = 132 bits (333), Expect = 6e-29, Method: Composition-based stats. Identities = 46/193 (23%), Positives = 85/193 (44%), Gaps = 7/193 (3%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I ++A RK +L G +A PTE+ YGL A+ +L +KKRP + Sbjct: 1 MLFSRIIAASAQRKLSVYLKKGGLVAYPTESCYGLGCLPTLAKALGKLAHLKKRPQHKGM 60 Query: 61 ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT-ACFR 118 I + + ++ + ++ + + WP P T +L L+ + + P ++ R Sbjct: 61 IVIGNQLEQLQPLLQMPFENIQTMLRNEWPAPKTFLL--LAKSGVLPALRGKRRSKLAVR 118 Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 VP ++L + G PL S NR+G+ + + + I+ G I + Sbjct: 119 VPDHTGARRLCQALGMPLVSTSCNRAGKRACRTEREVRRQF--GRDVWIVGGRIGRQKSP 176 Query: 178 STIVNVQCEKKVR 190 S I++ + K++R Sbjct: 177 SQIIDGETGKRLR 189 >gi|241760643|ref|ZP_04758735.1| translation factor SUA5 [Neisseria flavescens SK114] gi|241318824|gb|EER55350.1| translation factor SUA5 [Neisseria flavescens SK114] Length = 212 Score = 132 bits (333), Expect = 6e-29, Method: Composition-based stats. Identities = 43/192 (22%), Positives = 73/192 (38%), Gaps = 5/192 (2%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I + A R+ L G IA PTE+ YGL A+ +L +KKRP + Sbjct: 24 MMFPRILSAAAQRRLQAHLKKGGLIAYPTESCYGLGCVPTLSKALNQLIHLKKRPQHKGM 83 Query: 61 ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I + ++ ++ + WP P T +L + L RV Sbjct: 84 IVIGHSLEQLQPLLQRPSENIQTMLHEAWPAPKTFLLPASKKV-LPSLRGKGRSKLAVRV 142 Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P ++L + PL S NR+G+ + + + ++ G I K S Sbjct: 143 PAHAGARRLCQVLETPLVSTSCNRAGKRACKTEREVRRQF--GRKVWVVGGLIGKQKTPS 200 Query: 179 TIVNVQCEKKVR 190 I++ + ++R Sbjct: 201 QIIDGETGARLR 212 >gi|115451395|ref|NP_001049298.1| Os03g0201600 [Oryza sativa Japonica Group] gi|113547769|dbj|BAF11212.1| Os03g0201600 [Oryza sativa Japonica Group] Length = 183 Score = 132 bits (333), Expect = 7e-29, Method: Composition-based stats. Identities = 54/163 (33%), Positives = 76/163 (46%), Gaps = 4/163 (2%) Query: 41 NPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS 100 + A+ R+YEIK R PL V+D+ + + A VD L L PGP+T+VL + Sbjct: 10 SAEAVNRIYEIKGRVQTRPLAICVADVPDISRFAVVDHLPHGLLDSLLPGPVTVVLKRGN 69 Query: 101 TTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSI 159 + + L++ RVP F + + G LA+ SAN SG S NVK + Sbjct: 70 NSILERSLNPGLESIGVRVPDFDFIRAISRGAGSALALTSANLSGHPSSVNVKD--FEDL 127 Query: 160 CKEIPLIIDGGISKIGLE-STIVNVQCEKKVRILRPGGLEIET 201 + DGGI G STIV++ +ILR G ET Sbjct: 128 WPHCSYVFDGGILPSGRAGSTIVDLITPGVYKILRDGSSRQET 170 >gi|281349712|gb|EFB25296.1| hypothetical protein PANDA_013165 [Ailuropoda melanoleuca] Length = 187 Score = 132 bits (333), Expect = 7e-29, Method: Composition-based stats. Identities = 52/173 (30%), Positives = 84/173 (48%), Gaps = 12/173 (6%) Query: 31 TVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPG 90 T+YGLA + A+ +Y +K R PL + ++ V ++ V + L K PG Sbjct: 1 TLYGLACSASCSEALGAVYRLKGRSEAKPLAVCLGRVADVYRYCHVR-VPEGLLKDLLPG 59 Query: 91 PLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISIT 149 P+TLVL+ + +++ R+P F + L++ +G PLA+ SAN S Q S Sbjct: 60 PVTLVLER--SEELNKDLNPFTPLVGIRIPDHAFIQDLVQVFGGPLALTSANLSSQASSL 117 Query: 150 NVKHILSSSICKEIPLIIDGGISKIGLE------STIVNVQCEKKVRILRPGG 196 NV+ + ++ L+IDGG G ST+V++ K I+RPG Sbjct: 118 NVEE--FQDLWPQLSLVIDGGPIGDGQSPEYRLGSTVVDLSVPGKFGIIRPGC 168 >gi|148241524|ref|YP_001226681.1| translation factor [Synechococcus sp. RCC307] gi|147849834|emb|CAK27328.1| Possible translation factor [Synechococcus sp. RCC307] Length = 195 Score = 132 bits (333), Expect = 7e-29, Method: Composition-based stats. Identities = 54/196 (27%), Positives = 87/196 (44%), Gaps = 8/196 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + + L G P PT+T+ LA P+A + ++++K+RPA PLI + + Sbjct: 3 AEGFQVLAQRLQQGEPALFPTDTLPALAAI---PSAAQAIWQLKQRPADKPLILMGASVE 59 Query: 69 MVKK-HASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126 + P LA+L WPG LTLVL + L+ + RVP Sbjct: 60 QLLPCLGQEPPAGWQRLAELGWPGALTLVLPACGPV-VEALNPEGGCSLGLRVPACEAAL 118 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 + PLA SANRSG+ + L+ + I L + + G ST+V+ Q + Sbjct: 119 QLLRCSGPLATSSANRSGEPACRTAAE-LAHCFPEVIRLAPEPWLPGSGQASTVVSWQSD 177 Query: 187 KKVRILRPGGLEIETL 202 R+LR G + + + Sbjct: 178 G-WRVLRQGQVVVPEI 192 >gi|258404937|ref|YP_003197679.1| SUA5/yciO/yrdC domain-containing protein [Desulfohalobium retbaense DSM 5692] gi|257797164|gb|ACV68101.1| SUA5/yciO/yrdC domain protein [Desulfohalobium retbaense DSM 5692] Length = 219 Score = 132 bits (333), Expect = 8e-29, Method: Composition-based stats. Identities = 51/195 (26%), Positives = 75/195 (38%), Gaps = 4/195 (2%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 A + G + PTET++ + D+ NP ++ IK RP PL + M+ Sbjct: 21 ETAVTAVRQGGVLIYPTETLFAVGGDALNPAVGEQVQAIKARPEGKPLPVLLGAPEMLAM 80 Query: 73 H-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETY 131 A L FWPGPL+L++ A T L Sbjct: 81 VTAWQSRDLQRLTNAFWPGPLSLLVPARPGLPAAIQDHAGW-TCVRWTSHRDASWLSRQC 139 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK-IGLESTIVNVQCEKKVR 190 G PL SANRSG V L + + + + G S GL ST+V + + Sbjct: 140 GQPLIATSANRSGAP-PAAVAEQLDPEMIRSVNGVWLGHSSPDGGLPSTLVRILSGGVLE 198 Query: 191 ILRPGGLEIETLKRA 205 +LR G ++ L+ A Sbjct: 199 VLRQGAVDSRALEGA 213 >gi|269956584|ref|YP_003326373.1| Sua5/YciO/YrdC/YwlC family protein [Xylanimonas cellulosilytica DSM 15894] gi|269305265|gb|ACZ30815.1| Sua5/YciO/YrdC/YwlC family protein [Xylanimonas cellulosilytica DSM 15894] Length = 206 Score = 132 bits (332), Expect = 8e-29, Method: Composition-based stats. Identities = 37/189 (19%), Positives = 69/189 (36%), Gaps = 4/189 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + + L G IA PT++ Y L R+ ++++ + +D + Sbjct: 14 ARVIGQVTTMLRDGALIAYPTDSGYALGSRMDYHDGTERIRQVRRLNDKHHFTLVCADFA 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +D + K PGP T +L L L+ KT R+ + L Sbjct: 74 QLGHLVHLDNSAFRAIKAATPGPYTFILRALPEVP-RRLAHPKKKTVGVRITDNRVAQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + GQ + + + + ++DGG +T+V+ E Sbjct: 133 LHELGEPLLSSTLILPGQTAPLVDGWTIKEELDHVLDAVVDGGEVPE-RPTTVVDW-SEG 190 Query: 188 KVRILRPGG 196 +LR G Sbjct: 191 YPEVLRAGA 199 >gi|261749259|ref|YP_003256944.1| Sua5/YciO/YrdC/YwlC family protein [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497351|gb|ACX83801.1| Sua5/YciO/YrdC/YwlC family protein [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 192 Score = 132 bits (332), Expect = 8e-29, Method: Composition-based stats. Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 4/161 (2%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + K+ + L G + PT+TV+GL D+ N A+ ++Y+IK R +I V + Sbjct: 5 EEIEKSVKILKKGKSLLYPTDTVWGLGCDAFNIKAVEKIYKIKNRSFSKTMILLVESMDR 64 Query: 70 VKKHASVDPLSLH--LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126 + + P + L + P+T+V D A T R+ F Sbjct: 65 LYELVEEIPFFVKKILLENHRKKPITIVYDNPRKIVSKLNPQAKDNTLAIRLTMDPFCSL 124 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 LI+ P+ SAN SG + + +S SI K+I + Sbjct: 125 LIQNLDRPIISTSANLSGFPTPKSFCE-ISPSILKKIDYAV 164 >gi|50083490|ref|YP_045000.1| putative Sua5/YciO/YrdC/YwlC family protein [Acinetobacter sp. ADP1] gi|81393947|sp|Q6FFH9|RIMN_ACIAD RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|49529466|emb|CAG67178.1| putative ribosome maturation factor (dsRNA-binding protein) (RimN) [Acinetobacter sp. ADP1] Length = 192 Score = 132 bits (332), Expect = 8e-29, Method: Composition-based stats. Identities = 38/191 (19%), Positives = 73/191 (38%), Gaps = 11/191 (5%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ +A L G +A PTE V+GL D N A R++ +K+RP +I D+ Sbjct: 5 TTSVAEAAHCLKQGQVLAYPTEAVWGLGCDPFNELAFRQILALKQRPIEKGVILLAGDVG 64 Query: 69 MVKK-HASVDPLSLHLAKLFWP------GPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 ++ A +D W +T +L +S+ + T RV Sbjct: 65 QIEYLLADLDETIRAQVIESWTTRSVDERAITWLLP-VSSDQVPTWITGQHHQVAVRVTN 123 Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L + + SAN +G +++ S+ + ++G + S I Sbjct: 124 HPLCVALCHAFNGFIVSTSANPAGLEPARSLQEA--SAYFGQGLNYLNGDLGLSQQPSRI 181 Query: 181 VNVQCEKKVRI 191 ++ + +R Sbjct: 182 IDATTGRVIRD 192 >gi|284799516|ref|ZP_05984195.2| protein RimN [Neisseria subflava NJ9703] gi|284798106|gb|EFC53453.1| protein RimN [Neisseria subflava NJ9703] Length = 191 Score = 132 bits (332), Expect = 9e-29, Method: Composition-based stats. Identities = 43/192 (22%), Positives = 74/192 (38%), Gaps = 5/192 (2%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I + A R+ L G +A PTE+ YGL P A+ +L +KKRP + Sbjct: 3 MMFPRILSAAAQRRLQAHLKKGGLVAYPTESCYGLGCVPTLPKALNQLIHLKKRPQHKGM 62 Query: 61 ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I + ++ ++ + WP P T +L + L RV Sbjct: 63 IVIGHSLEQLQPLLQRPSENIQTMLHEAWPAPKTFLLPAGKKV-LPSLRGKRRSKLAVRV 121 Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P ++L + PL S NR+G+ + + + ++ G I K S Sbjct: 122 PAHAGARRLCQVLEMPLVSTSCNRAGKRACKTEREVRRQF--GRKVWVVGGLIGKQKTPS 179 Query: 179 TIVNVQCEKKVR 190 I++ + ++R Sbjct: 180 QIIDGETGARLR 191 >gi|320538321|ref|ZP_08038202.1| Sua5/YciO/YrdC/YwlC family protein [Treponema phagedenis F0421] gi|320144820|gb|EFW36555.1| Sua5/YciO/YrdC/YwlC family protein [Treponema phagedenis F0421] Length = 181 Score = 132 bits (332), Expect = 9e-29, Method: Composition-based stats. Identities = 57/196 (29%), Positives = 92/196 (46%), Gaps = 19/196 (9%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 I+S D N+ E L + IPT+T+YG + P ++ IK R A I Sbjct: 2 IVSKIDGNSADITAELLREKKIVIIPTDTIYGFSGIM--PETADKIAAIKGRNASKQFIA 59 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 ++ KK+ + L WPGPLTL++ L N T FR P Sbjct: 60 LIAKPEDYKKYTDISIPQKFL--SLWPGPLTLIMRLK-----------NGNTQAFRCPND 106 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 + ++++E G P+ SANRSG +T+++ + +++ LI+D G GL STIV Sbjct: 107 NWLREVVEKTGKPIYSTSANRSGFPPLTDIEE-IKQEFQQDVSLIVDAGK-ITGLASTIV 164 Query: 182 NVQCEKKVRILRPGGL 197 ++ + ++LR G + Sbjct: 165 DISGSEP-KLLRQGAI 179 >gi|291287679|ref|YP_003504495.1| SUA5/yciO/yrdC domain protein [Denitrovibrio acetiphilus DSM 12809] gi|290884839|gb|ADD68539.1| SUA5/yciO/yrdC domain protein [Denitrovibrio acetiphilus DSM 12809] Length = 201 Score = 132 bits (332), Expect = 9e-29, Method: Composition-based stats. Identities = 43/188 (22%), Positives = 81/188 (43%), Gaps = 8/188 (4%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I +NA+ L P+ T+T+YG+ + + ++++IK R P Sbjct: 1 MLIAKAEGNNAIEIFRRALTKSEPVIFSTDTIYGIGAPVSDVKSNEKIFDIKGRDRTKPF 60 Query: 61 ICHVSDISMVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 +S + + + A + L + WP P+T +L + ++PL T N T R+ Sbjct: 61 PILISSLKQLSEIAIIESEKQLKALEEVWPAPVTFIL--KAKKGLNPLFTIN-GTVAVRM 117 Query: 120 PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-S 178 P + P++ SAN SG+ + K ++ + K I I D +E S Sbjct: 118 PDKKWLLNLIDTVGPVSATSANLSGENYSNSEKAVIETFKSKIIFFIFDNNQ---NVESS 174 Query: 179 TIVNVQCE 186 +I+++ + Sbjct: 175 SIIDISQD 182 >gi|329894846|ref|ZP_08270646.1| Sua5 YciO YrdC YwlC family protein [gamma proteobacterium IMCC3088] gi|328922740|gb|EGG30074.1| Sua5 YciO YrdC YwlC family protein [gamma proteobacterium IMCC3088] Length = 173 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 41/176 (23%), Positives = 66/176 (37%), Gaps = 5/176 (2%) Query: 18 FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77 L G IA PTE V+GL D N A+ RL +K+RP LI +++ + Sbjct: 1 MLARGGVIAYPTEGVWGLGCDPLNKRAVERLLALKERPWQKGLIVALANEGVADTLLRTL 60 Query: 78 PLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPL 135 P K WPGP T ++ T R+ + L G + Sbjct: 61 PQDRKNAIKATWPGPNTWLVPH--DDLWPSWVTGESDFIACRLSAYAVVRDLARAAGGAI 118 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 SAN +GQ+ + + + + I+ G + + S I + + +R Sbjct: 119 ISTSANPAGQVPAMTAQAV-RQYFGRSVDFIMPGRVQGLQKPSVIRHGLTGETLRE 173 >gi|326796760|ref|YP_004314580.1| ribosome maturation factor rimN [Marinomonas mediterranea MMB-1] gi|326547524|gb|ADZ92744.1| ribosome maturation factor rimN [Marinomonas mediterranea MMB-1] Length = 185 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 68/185 (36%), Gaps = 5/185 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++++ + + + G +A PTE V+GL D N A+RR+ +K RP LI D Sbjct: 4 TSSIAEITDIIRQGGVVAYPTEAVWGLGCDPYNELAVRRILALKSRPEEKGLILITGDKQ 63 Query: 69 MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126 + K ++ S P + V+ T ++ R+ Sbjct: 64 QLLKWQPHLNAESFERLVSAPTHPTSWVVP--DTEVTPTWVRGKHQSVAIRLSQHQPVVD 121 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L + SAN +G+ N+ L + + I D + S + ++ Sbjct: 122 LCNRLEQAIVSTSANPAGEEPAMNIDE-LKGYFGETLDGIYDAPLGGATSPSQVKDILTG 180 Query: 187 KKVRI 191 K R+ Sbjct: 181 KVFRV 185 >gi|209525410|ref|ZP_03273950.1| SUA5/yciO/yrdC domain [Arthrospira maxima CS-328] gi|209494090|gb|EDZ94405.1| SUA5/yciO/yrdC domain [Arthrospira maxima CS-328] Length = 203 Score = 131 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 57/202 (28%), Positives = 86/202 (42%), Gaps = 20/202 (9%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 ++ ++ A + I PT+TV LA A +++ K+RP PLI Sbjct: 3 KVSQEELIKAAIAGV---AVITFPTDTVPALAARPDKAEA---IFQTKQRPPDKPLILMG 56 Query: 65 SDISMVKKHASVDPLSLHL------AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 + + + VD L+ L A+ +WPG LTLVL S ++ + T R Sbjct: 57 ATAESLWQF--VDSLAWELECWQQIARQYWPGALTLVLPASSAVP-PAVNPTDPTTIGLR 113 Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI-SKIGL 176 VP C ++++ G PLA SAN SGQ + I E+ + D S + Sbjct: 114 VPKCEIALEILKRTG-PLATTSANLSGQPPLLTTADIDRQF--PEVLTLKDAPPESGSAI 170 Query: 177 ESTIVNVQCEKKVRILRPGGLE 198 ST+V ILR GG+E Sbjct: 171 PSTVVRWTKNGDWEILRRGGVE 192 >gi|317131938|ref|YP_004091252.1| SUA5/yciO/yrdC domain [Ethanoligenens harbinense YUAN-3] gi|315469917|gb|ADU26521.1| SUA5/yciO/yrdC domain [Ethanoligenens harbinense YUAN-3] Length = 216 Score = 131 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 63/215 (29%), Positives = 105/215 (48%), Gaps = 10/215 (4%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I++ ++ + + E + G PI IPT+T Y LA + + AI ++++ KKRP L Sbjct: 1 MNIVTNINT-CIDEILEHMQKGNPIIIPTDTNYNLACLANSAEAIDKIFKYKKRPKNKAL 59 Query: 61 ICHVSDISMVKKHASVDP--LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF- 117 D S K+ D + LA+ FWPGPL ++++ ++ + L+ N T Sbjct: 60 SLFFLDPSDWNKYGICDNERIIERLAETFWPGPLNIIINKRNSDYDYMLN--NKSTIALG 117 Query: 118 RVPCGFTKKLIETY-GHPLAIPSANRSGQISITNV-KHILSSSICKEIPLIID-GGISKI 174 V ++ + G P+AI SAN SG + T V K I S + + I+ Sbjct: 118 SVSNPTWREFMSHLNGEPIAITSANISGTVDNTLVTKEIAISQMKNCVDFFIESSNAIST 177 Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAISVE 209 STIV+V + V+++R G ++ + L A+ VE Sbjct: 178 SKSSTIVSVI-DNTVKLIREGDIDKKALDNALHVE 211 >gi|257126756|ref|YP_003164870.1| Sua5/YciO/YrdC/YwlC family protein [Leptotrichia buccalis C-1013-b] gi|257050695|gb|ACV39879.1| Sua5/YciO/YrdC/YwlC family protein [Leptotrichia buccalis C-1013-b] Length = 219 Score = 131 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 46/213 (21%), Positives = 91/213 (42%), Gaps = 17/213 (7%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ A L G PT+TVYG+ + + ++Y+IKKR +I +S+ Sbjct: 11 KSEIQNAVIALKNGGVAVFPTDTVYGIGTLPK-KEFVEKIYKIKKRDFSKKIIALISNQK 69 Query: 69 MVKKHASVDPLSLH----LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123 ++ + ++ + +WPG LT++ + + ++ T R+P Sbjct: 70 ILSSLINETSENMDKISNILNKYWPGELTVIF--RANQNFTKKFDKDMHTIGIRIPKNEI 127 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK--------IG 175 ++IE G + SAN SG+ S+T +++ + + I D I G Sbjct: 128 ALEIIENSGGVVLTTSANISGENSVTKFENLNENLLKNVDVAISDESIENFEKINNKLTG 187 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISV 208 STI+ + K+ +LR G + E + + + Sbjct: 188 KPSTIIKYE-NGKLILLREGNISFEEILKEFQI 219 >gi|302556903|ref|ZP_07309245.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces griseoflavus Tu4000] gi|302474521|gb|EFL37614.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces griseoflavus Tu4000] Length = 200 Score = 131 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 71/192 (36%), Gaps = 4/192 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + E + + IA PT++ Y L + + I R+ I+K + D + Sbjct: 8 PRTISQVAESIRSDSLIAYPTDSCYALGCRLGSRSGIDRIRTIRKLDDRHHFTLMCRDFA 67 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + +D K PG T +L L KT R+P T+ L Sbjct: 68 QLGQFVRIDNDVFRAVKASTPGSYTFILPATKEVP-RMLMHPKKKTVGVRIPDHVVTQAL 126 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL + G+ + + ++ ++D G +T+++ Sbjct: 127 LEELGEPLLSSTLLLPGEDEPMTQGWEIKDRLDHQVDAVLDSGDCGT-EPTTVIDFSG-G 184 Query: 188 KVRILRPGGLEI 199 + I+R G ++ Sbjct: 185 EAEIVRRGAGDV 196 >gi|326335829|ref|ZP_08202008.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691973|gb|EGD33933.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 186 Score = 131 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 83/189 (43%), Gaps = 13/189 (6%) Query: 12 LRKACEF----LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 +++ + L I PT+T++GL D+ + I R+ +IK+R I VS + Sbjct: 3 IKEIVKLTLPFLQENKVILYPTDTIWGLGCDAYSYQGIERIRQIKRRDINKNFILLVSSL 62 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKK 126 M+K++ + + K P +++ + + + A + FR V F ++ Sbjct: 63 GMLKQYVKIPSEIVFFLKSQT-RPTSVIYQEVCNSYLPL---AKDNSLAFRIVQDEFCRE 118 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI--SKIGLESTIVNVQ 184 LI+ +G P+ SAN +G+ S +S I + I+ + S +V ++ Sbjct: 119 LIKAFGKPIISTSANITGEPSPMTFSQ-ISEEIKNLVDYIVPYHQQNQEGKTPSQLVKIE 177 Query: 185 CEKKVRILR 193 E ++ LR Sbjct: 178 -EGEIIFLR 185 >gi|260554284|ref|ZP_05826534.1| yrdC [Acinetobacter sp. RUH2624] gi|260404593|gb|EEW98113.1| yrdC [Acinetobacter sp. RUH2624] Length = 189 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 41/191 (21%), Positives = 71/191 (37%), Gaps = 12/191 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ +A E L G +A PTE V+GL D N A +++ ++K+RP +I S IS Sbjct: 3 TTSVTEAAECLQQGQVLAYPTEAVWGLGCDPFNEQAFQKILKLKQRPIEKGVILLASHIS 62 Query: 69 MVKK-HASVDPLSLHLAKLFWP------GPLTLVLDLLSTTDIHPLSTANLKTACFRV-P 120 V+ S+ + W T +L + I RV Sbjct: 63 QVEHLLTSLPQTTQQEIIDCWTNHQPSERATTWLLP--ADQHIPSWIKGEHPLVAVRVTT 120 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L + + SAN SGQ +++ ++G + + S I Sbjct: 121 HPLCVALCNAFHGFIVSTSANPSGQEPAHSLQDAC--QYFGSQLNYLNGDLGQSQQPSRI 178 Query: 181 VNVQCEKKVRI 191 +N + +R Sbjct: 179 INALTGEVIRP 189 >gi|22330801|ref|NP_566156.2| yrdC family protein [Arabidopsis thaliana] gi|6091731|gb|AAF03443.1|AC010797_19 hypothetical protein [Arabidopsis thaliana] gi|19310491|gb|AAL84979.1| At3g1920/F28J7.25 [Arabidopsis thaliana] gi|23505865|gb|AAN28792.1| At3g1920/F28J7.25 [Arabidopsis thaliana] gi|332640214|gb|AEE73735.1| putative translation factor [Arabidopsis thaliana] Length = 307 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 47/209 (22%), Positives = 77/209 (36%), Gaps = 19/209 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 DS L+ + L G IPT+TVY +A D +N +A+ RL IKK + PL + Sbjct: 79 DSWKLQPVIDLLKQGAVGVIPTDTVYAIACDCKNHSAVERLRRIKKIESSKPLSILCRSL 138 Query: 68 SMVKKHASVDPL--------SLHLAKLFWPGPLTLVLDLLSTTDIH-------PLSTANL 112 + P K PGP T +L + A+ Sbjct: 139 RDIDTFTMGFPRGDGHGHANVFRAVKQCLPGPYTFILTASKELPKQCVGYGTTSVKYASR 198 Query: 113 KTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKE-IPLIIDGG 170 K R+ + +++ PL S + + E + ++DGG Sbjct: 199 KNVGVRISDDALCQAILQQMDAPLICTSVKGPKENEWMIDPTAIGDIYGPEGLDFVVDGG 258 Query: 171 ISKIGLESTIVNVQCEKKVRILRPGGLEI 199 I ++ STIV++ +++R G I Sbjct: 259 I-RVAEPSTIVDMTGPYP-KVIREGKGPI 285 >gi|330881838|gb|EGH15987.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 254 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 43/173 (24%), Positives = 66/173 (38%), Gaps = 4/173 (2%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK-KHASVDPLSLHL 83 IA PTE V+GL D + A+ RL IK RP LI +I L L Sbjct: 2 IAYPTEAVWGLGCDPWDEEAVYRLLAIKSRPVEKGLILIADNIRQFDFLFEDFPQLWLDR 61 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRS 143 WPGP T ++ + T +T RV T + + PL SAN + Sbjct: 62 MASTWPGPNTWLVPHQ--NLLPEWITGIHETVALRVTDHPTVRELCALVGPLISTSANPA 119 Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 G+ + + + +I ++ G + S I ++ + + GG Sbjct: 120 GRPAARSRLRV-EQYFRGQIDGVLGGSLGGRRNPSVIRDIATGQVCALADAGG 171 >gi|308447376|ref|XP_003087416.1| hypothetical protein CRE_14455 [Caenorhabditis remanei] gi|308256659|gb|EFP00612.1| hypothetical protein CRE_14455 [Caenorhabditis remanei] Length = 561 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 37/191 (19%), Positives = 67/191 (35%), Gaps = 12/191 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ +A + L G +A PTE V+GL D N A + +K+RP +I +S Sbjct: 375 TTSVAEAAQILQQGKVLAYPTEAVWGLGCDPFNEQAFLEILRLKQRPIEKGVILLAGQLS 434 Query: 69 MVKK-HASVDPLSLHLAKLFWP------GPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 V+ +DP+ W T +L + I RV Sbjct: 435 QVEHLLTEIDPIIREQIIQSWTQRSRAERATTWLLP--ADDKIPQWIKGQHAQVAVRVTN 492 Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L + + SAN +G +++ S ++G + S I Sbjct: 493 HPLCIALCNAFNGFIVSTSANSAGLEPARSLQQA--SQYFGSELNYLNGDLGLSREPSKI 550 Query: 181 VNVQCEKKVRI 191 ++ + +R Sbjct: 551 IDASTAQVIRA 561 >gi|169632175|ref|YP_001705911.1| putative ribosome maturation factor (dsRNA-binding protein) (RimN) [Acinetobacter baumannii SDF] gi|169797636|ref|YP_001715429.1| putative ribosome maturation factor (dsRNA-binding protein) (RimN) [Acinetobacter baumannii AYE] gi|184156507|ref|YP_001844846.1| putative translation factor (SUA5) [Acinetobacter baumannii ACICU] gi|213155570|ref|YP_002317615.1| protein YrdC [Acinetobacter baumannii AB0057] gi|215484990|ref|YP_002327231.1| Protein yrdC [Acinetobacter baumannii AB307-0294] gi|260557579|ref|ZP_05829793.1| yrdC [Acinetobacter baumannii ATCC 19606] gi|301346865|ref|ZP_07227606.1| Protein yrdC [Acinetobacter baumannii AB056] gi|301512293|ref|ZP_07237530.1| Protein yrdC [Acinetobacter baumannii AB058] gi|301594507|ref|ZP_07239515.1| Protein yrdC [Acinetobacter baumannii AB059] gi|332852662|ref|ZP_08434316.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter baumannii 6013150] gi|332869378|ref|ZP_08438756.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter baumannii 6013113] gi|332875641|ref|ZP_08443453.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter baumannii 6014059] gi|212277661|sp|B2I111|RIMN_ACIBC RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|212277662|sp|B0VNL3|RIMN_ACIBS RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|212277670|sp|B0VCB7|RIMN_ACIBY RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|212277730|sp|A3M154|RIMN_ACIBT RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|169150563|emb|CAM88472.1| putative ribosome maturation factor (dsRNA-binding protein) (RimN) [Acinetobacter baumannii AYE] gi|169150967|emb|CAO99583.1| putative ribosome maturation factor (dsRNA-binding protein) (RimN) [Acinetobacter baumannii] gi|183208101|gb|ACC55499.1| putative translation factor (SUA5) [Acinetobacter baumannii ACICU] gi|193076053|gb|ABO10648.2| putative Sua5/YciO/YrdC/YwlC family protein [Acinetobacter baumannii ATCC 17978] gi|213054730|gb|ACJ39632.1| protein YrdC [Acinetobacter baumannii AB0057] gi|213988323|gb|ACJ58622.1| Protein yrdC [Acinetobacter baumannii AB307-0294] gi|260408752|gb|EEX02056.1| yrdC [Acinetobacter baumannii ATCC 19606] gi|322506375|gb|ADX01829.1| Putative ribosome maturation factor [Acinetobacter baumannii 1656-2] gi|323516243|gb|ADX90624.1| putative translation factor (SUA5) [Acinetobacter baumannii TCDC-AB0715] gi|332729130|gb|EGJ60477.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter baumannii 6013150] gi|332732796|gb|EGJ64012.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter baumannii 6013113] gi|332736214|gb|EGJ67229.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter baumannii 6014059] Length = 189 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 41/191 (21%), Positives = 70/191 (36%), Gaps = 12/191 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ +A E L G +A PTE V+GL D N A +++ E+K+RP +I IS Sbjct: 3 TTSVTEAAECLQQGQVLAYPTEAVWGLGCDPFNEQAFQKILELKQRPIEKGVILLAGHIS 62 Query: 69 MVKK-HASVDPLSLHLAKLFWP------GPLTLVLDLLSTTDIHPLSTANLKTACFRV-P 120 V+ S+ + W T +L + I RV Sbjct: 63 QVEHLLTSLPQTTQQEIIDCWTNHQPSERATTWLLP--ADQHIPSWIKGEHPLVAVRVTT 120 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L + + SAN SGQ +++ ++G + + S I Sbjct: 121 HPLCVALCNAFHGFIVSTSANPSGQEPAHSLQDAC--QYFGSQLNYLNGDLGQSQQPSRI 178 Query: 181 VNVQCEKKVRI 191 +N + +R Sbjct: 179 INALTGEVIRP 189 >gi|81300673|ref|YP_400881.1| hypothetical protein Synpcc7942_1864 [Synechococcus elongatus PCC 7942] gi|81169554|gb|ABB57894.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942] Length = 195 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 52/197 (26%), Positives = 88/197 (44%), Gaps = 11/197 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 +L AG I+ PT+T+ LAV ++Y +K+RP+ PLI + + + Sbjct: 5 SLAAVITAAQAGQVISFPTDTLPALAVQPDQA---AQIYRLKQRPSEKPLILMAATAAEL 61 Query: 71 KKHASVDPLSL----HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125 A P +A +WPG LTLVL ++ + + R+P C + Sbjct: 62 WPFAQGSPEDQAQWNAIANQYWPGALTLVLPASDRLPAA-VNPLDRSSIGLRIPACALAR 120 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +++ G PLA SANRSG+ +++ + L D GL ST+V Q Sbjct: 121 QILAETG-PLATTSANRSGEP-ALLDPDAIAAEFPEVTVLAEDPWPDPSGLASTVVRWQA 178 Query: 186 EKKVRILRPGGLEIETL 202 + + ++LR G + + + Sbjct: 179 DGQWQVLRQGSIVLGEV 195 >gi|119475272|ref|ZP_01615625.1| Sua5/YciO/YrdC family protein [marine gamma proteobacterium HTCC2143] gi|119451475|gb|EAW32708.1| Sua5/YciO/YrdC family protein [marine gamma proteobacterium HTCC2143] Length = 184 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 39/181 (21%), Positives = 70/181 (38%), Gaps = 5/181 (2%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 ++A L G IA PTE+V+G D N A+ +L +K+RP LI + + Sbjct: 6 QRAARQLLVGNIIAYPTESVWGFGCDPDNQEAVAKLLSLKQRPVSKGLILVAASAEQFSR 65 Query: 73 HAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIET 130 + + P + P T ++ + T + + RV L Sbjct: 66 YLEGLSPSLQEKFRRPTAVPTTWLVP--ANKHAMSWITGDYDSIALRVSTYKPVVDLCVA 123 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 +G PL SAN +G+ + + + + + I+ G S I ++ +K +R Sbjct: 124 FGTPLVSTSANTAGK-APSQWPWQMHRYLGGGLDYILPGSTGGNVKPSEIRDLLSDKVIR 182 Query: 191 I 191 Sbjct: 183 S 183 >gi|225077323|ref|ZP_03720522.1| hypothetical protein NEIFLAOT_02382 [Neisseria flavescens NRL30031/H210] gi|224951315|gb|EEG32524.1| hypothetical protein NEIFLAOT_02382 [Neisseria flavescens NRL30031/H210] Length = 190 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 42/192 (21%), Positives = 73/192 (38%), Gaps = 5/192 (2%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I + A R+ L G +A PTE+ YGL A+ +L +KKRP + Sbjct: 2 MMFPRILSAAAQRRLQAHLKKGGLVAYPTESCYGLGCVPTLSKALNQLIHLKKRPQHKGM 61 Query: 61 ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I + ++ ++ + WP P T +L + L RV Sbjct: 62 IVIGHSLEQLQPLLQRPSENIQTMLHEAWPAPKTFLLSAGKKV-LPSLRGKGRSKLAVRV 120 Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P ++L + PL S NR+G+ + + + ++ G I K S Sbjct: 121 PAHAGARRLCQVLEMPLVSTSCNRAGKRACKTEREVRRQF--GRKVWVVGGLIGKQKTPS 178 Query: 179 TIVNVQCEKKVR 190 I++ + ++R Sbjct: 179 QIIDGETGVRLR 190 >gi|299771934|ref|YP_003733960.1| Protein yrdC [Acinetobacter sp. DR1] gi|298702022|gb|ADI92587.1| Protein yrdC [Acinetobacter sp. DR1] Length = 189 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 41/191 (21%), Positives = 70/191 (36%), Gaps = 12/191 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ +A E L G +A PTE V+GL D N A +++ E+K+RP +I IS Sbjct: 3 TTSVTEAAECLQQGQVLAYPTEAVWGLGCDPFNEQAFQKILELKQRPIEKGVILLAGHIS 62 Query: 69 MVKK-HASVDPLSLHLAKLFWP------GPLTLVLDLLSTTDIHPLSTANLKTACFRV-P 120 V+ S+ + W T +L + I RV Sbjct: 63 QVEHLLTSLPQTTQQEIIDCWTNHQPSERATTWLLP--AGEHIPSWIKGEHPLVAVRVTT 120 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L + + SAN SGQ +++ ++G + + S I Sbjct: 121 HPLCVALCNAFHGFIVSTSANPSGQEPAHSLQDAC--QYFGSQLNYLNGDLGQSQQPSRI 178 Query: 181 VNVQCEKKVRI 191 +N + +R Sbjct: 179 INALTGEIIRA 189 >gi|307151374|ref|YP_003886758.1| SUA5/yciO/yrdC domain-containing protein [Cyanothece sp. PCC 7822] gi|306981602|gb|ADN13483.1| SUA5/yciO/yrdC domain protein [Cyanothece sp. PCC 7822] Length = 193 Score = 130 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 48/194 (24%), Positives = 80/194 (41%), Gaps = 14/194 (7%) Query: 16 CEFL---DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 E + AG ++ PT+TV LA ++ K+RP PLI + + + Sbjct: 7 AELIAGTKAGKVVSFPTDTVPALAALPSYS---GLIFVAKQRPQDKPLILMGASLEDLWP 63 Query: 73 H----ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128 + A + L + + PG LTLVL + T + T RVP ++I Sbjct: 64 YVSGTAKELDIWQELGQKYLPGALTLVLPASEKIPVAMNPT-DPTTIGIRVPKHQVAQMI 122 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 + PLA SAN SG+ ++ ++ I + + E+ + + G ST++ Sbjct: 123 LSKTGPLATTSANLSGEPALLSMNKI--AQVFPEVLTLDEESPPGSGSPSTVIKWTNLG- 179 Query: 189 VRILRPGGLEIETL 202 ILR G + L Sbjct: 180 WEILRQGPIIPSNL 193 >gi|284052762|ref|ZP_06382972.1| hypothetical protein AplaP_14933 [Arthrospira platensis str. Paraca] Length = 203 Score = 130 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 54/201 (26%), Positives = 85/201 (42%), Gaps = 16/201 (7%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 ++ ++ A + I PT+TV LA A +++ K+RP PLI Sbjct: 3 KVSQEELIKAAIAGV---AVITFPTDTVPALAARPDKAEA---IFQTKQRPPDKPLILMG 56 Query: 65 SDISMVKKHASVDPLSL----HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 + + + L +A+ +WPG LTLVL S ++ + T RVP Sbjct: 57 ATAESLWQFVDSQTWELECWQQIARQYWPGALTLVLPASSAVP-PAVNPTDPTTIGLRVP 115 Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI-SKIGLES 178 C ++++ G PLA SAN SGQ + V I E+ + + S + S Sbjct: 116 KCEIALEILKRTG-PLATTSANLSGQPPLLTVADIDRQF--PEVLSLKESPPESGSAIPS 172 Query: 179 TIVNVQCEKKVRILRPGGLEI 199 T+V ILR GG+E+ Sbjct: 173 TVVRWTKNGDWEILRSGGVEL 193 >gi|228471567|ref|ZP_04056342.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga gingivalis ATCC 33624] gi|228277143|gb|EEK15823.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga gingivalis ATCC 33624] Length = 186 Score = 130 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 51/196 (26%), Positives = 90/196 (45%), Gaps = 14/196 (7%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+I I +++ FL +G I PT+T++GL D + I+R+ IK+R Sbjct: 1 MEINEI-----VKETLSFLRSGKVILYPTDTIWGLGCDPYSREGIQRIQAIKQRDIRKSF 55 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-V 119 I VS M++++ +V +L P +++ + + + A + FR V Sbjct: 56 ILLVSSYQMLQRYVAVSQETLAFLDK-QERPTSVIYTQVYDSHLPE---AADHSLAFRVV 111 Query: 120 PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK--IGLE 177 F K LI+ + PL SAN SG+ S N ++S I K + I+ + G Sbjct: 112 KDPFCKALIDAFDAPLVSTSANISGEESPKNFS-LISEQIKKSVDYIVPYRREEQGAGQP 170 Query: 178 STIVNVQCEKKVRILR 193 S ++ ++ + +V LR Sbjct: 171 SQLLKIE-DNQVIFLR 185 >gi|254167519|ref|ZP_04874371.1| Sua5/YciO/YrdC/YwlC family protein [Aciduliprofundum boonei T469] gi|197623782|gb|EDY36345.1| Sua5/YciO/YrdC/YwlC family protein [Aciduliprofundum boonei T469] Length = 180 Score = 130 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 49/195 (25%), Positives = 91/195 (46%), Gaps = 17/195 (8%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + K E+ P+ +PT+T+YGL + I ++Y+IK R + V++I M+ Sbjct: 1 MDKIAEYAKN-EPVVMPTDTLYGLCMSIDGD--INKIYKIKGRSVEKKIPVGVANIEMMG 57 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETY 131 K A + P + L + F PGPLTLVL + T R+P + Sbjct: 58 KIAEITPEAEKLIRAFMPGPLTLVLRNKGIKWL-------GDTVAVRIPAHTLTIYLMEK 110 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 P+ + SAN SG+ + + ++ ++ ++ +D G +G STI+ + V + Sbjct: 111 IGPITLTSANISGEKAPS----VIEDTMKLDVKYRLDCGR-LMGKPSTIIKLIDG--VEL 163 Query: 192 LRPGGLEIETLKRAI 206 +R G + + ++ R + Sbjct: 164 IREGAIPMASIMRVL 178 >gi|239503034|ref|ZP_04662344.1| Protein yrdC [Acinetobacter baumannii AB900] Length = 189 Score = 130 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 41/191 (21%), Positives = 69/191 (36%), Gaps = 12/191 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ +A E L G +A PTE V+GL D N A +++ E+K+RP +I IS Sbjct: 3 TTSVTEAAECLQQGQVLAYPTEAVWGLGCDPFNEQAFQKILELKQRPIEKGVILLAGHIS 62 Query: 69 MVKK-HASVDPLSLHLAKLFWP------GPLTLVLDLLSTTDIHPLSTANLKTACFRV-P 120 V+ S+ + W T +L + I RV Sbjct: 63 QVEHLLTSLPQTTQQEIIDCWTNHQPSERATTWLLP--ADQHIPSWIKGEHPLVAVRVTT 120 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L + + SAN SGQ +++ ++G + S I Sbjct: 121 HPLCVALCNAFHGFIVSTSANPSGQEPAHSLQDAC--QYFGSQLNYLNGDLGLSQQPSRI 178 Query: 181 VNVQCEKKVRI 191 +N + +R Sbjct: 179 INALTGEVIRP 189 >gi|289596430|ref|YP_003483126.1| Sua5/YciO/YrdC/YwlC family protein [Aciduliprofundum boonei T469] gi|289534217|gb|ADD08564.1| Sua5/YciO/YrdC/YwlC family protein [Aciduliprofundum boonei T469] Length = 189 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 49/198 (24%), Positives = 92/198 (46%), Gaps = 17/198 (8%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++ K E+ P+ +PT+T+YGL + I ++Y+IK R + V++I Sbjct: 7 KESVDKIAEYAKN-EPVVMPTDTLYGLCMSIDGD--INKIYKIKGRSIEKKIPVGVANIE 63 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128 M+ K A + P + L + F PGPLTLVL + T R+P + Sbjct: 64 MMGKIAEITPEAEKLIRAFMPGPLTLVLRNKGVKWL-------GDTVAVRIPAHTLTIYL 116 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 P+ + SAN SG+ + + ++ ++ ++ +D G +G STI+ + Sbjct: 117 MEKIGPITLTSANISGEKAPS----VIEDTMKLDVKYRLDCGR-LMGKPSTIIRLVDG-- 169 Query: 189 VRILRPGGLEIETLKRAI 206 V ++R G + + ++ R + Sbjct: 170 VELIREGAIPMASIMRIL 187 >gi|262281298|ref|ZP_06059079.1| DsRNA-binding protein [Acinetobacter calcoaceticus RUH2202] gi|262257124|gb|EEY75861.1| DsRNA-binding protein [Acinetobacter calcoaceticus RUH2202] Length = 189 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 41/191 (21%), Positives = 70/191 (36%), Gaps = 12/191 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ +A E L G +A PTE V+GL D N A +++ E+K+RP +I IS Sbjct: 3 TTSVTEAAESLHQGQVLAYPTEAVWGLGCDPFNEQAFQKILELKQRPIEKGVILLAGHIS 62 Query: 69 MVKK-HASVDPLSLHLAKLFWP------GPLTLVLDLLSTTDIHPLSTANLKTACFRV-P 120 V+ S+ + W T +L + I RV Sbjct: 63 QVEHLLTSLPEATQQEIIDCWTNHQPSERATTWLLP--AGEHIPSWIKGEHPLVAVRVTT 120 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L + + SAN SGQ +++ ++G + + S I Sbjct: 121 HPLCVALCNAFHGFIVSTSANPSGQEPAHSLQDAC--QYFGSQLNYLNGDLGQSQQPSRI 178 Query: 181 VNVQCEKKVRI 191 +N + +R Sbjct: 179 INALTGEIIRA 189 >gi|90415413|ref|ZP_01223347.1| Sua5/YciO/YrdC/YwlC family protein [marine gamma proteobacterium HTCC2207] gi|90332736|gb|EAS47906.1| Sua5/YciO/YrdC/YwlC family protein [marine gamma proteobacterium HTCC2207] Length = 189 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 66/180 (36%), Gaps = 5/180 (2%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 A L +A PTE+V+GL D + A+ L +K R LI + Sbjct: 12 AAARLLQQQAVVAYPTESVWGLGCDPGSLVAVEELLRLKGRSVSKGLILIAASTEQFSSF 71 Query: 74 AS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY 131 ++P +L + P T ++ + + T RV L + + Sbjct: 72 LKGLEPDALLRFQTPQQKPTTWLVPNNGSA--PEWISGGHDTLALRVTDHPLAAALCQLF 129 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 G PL SAN GQ + + + + + + + + G + S I ++ + VR Sbjct: 130 GGPLVSTSANPQGQPAAISAEQV-QAYFGQAVAVQTPGTVGGAVKPSEIRHLLSGEIVRE 188 >gi|158337414|ref|YP_001518589.1| hypothetical protein AM1_4293 [Acaryochloris marina MBIC11017] gi|158307655|gb|ABW29272.1| conserved hypothetical protein [Acaryochloris marina MBIC11017] Length = 194 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 47/186 (25%), Positives = 78/186 (41%), Gaps = 11/186 (5%) Query: 20 DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD-- 77 +G ++ PT+TV LA + +++ K+R PLI + M+ + D Sbjct: 14 RSGRLVSFPTDTVPALAARPDQAS---QIFAAKQRQPDKPLILMGASPEMLWPYVRKDGK 70 Query: 78 --PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPL 135 +A +WPG LTLVL ++ + RVP ++I PL Sbjct: 71 ELNQWQQMAADYWPGALTLVLPACDRVP-PAMNPLTPDSIGIRVPNSQVAQMILQQTGPL 129 Query: 136 AIPSANRSGQISITNVKHILSS--SICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 A S NRSGQ ++T V+ I + + + S L ST++ + +LR Sbjct: 130 ATTSINRSGQPALTTVEAINQHFPDVFTPLASLWPEPQSTEPLPSTVIKWDGQG-WEVLR 188 Query: 194 PGGLEI 199 G ++I Sbjct: 189 QGVIQI 194 >gi|126695682|ref|YP_001090568.1| putative translation factor (SUA5) [Prochlorococcus marinus str. MIT 9301] gi|126542725|gb|ABO16967.1| Putative translation factor (SUA5) [Prochlorococcus marinus str. MIT 9301] Length = 193 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 50/192 (26%), Positives = 81/192 (42%), Gaps = 8/192 (4%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 + A + L++GLPI PT+T+ + P +Y+ KKR PLI S+ + Sbjct: 7 KSALKTLNSGLPIIFPTDTLPAIGCL---PKFSNIIYKFKKRDRNKPLILMGSEYKHLID 63 Query: 73 HASVDPL--SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130 + ++A +WPG LT+V+ ++ T+N T R+P K + Sbjct: 64 YVHESAKKDYENIASKYWPGALTIVVPASEKQTVN--LTSNDLTIGLRIPNSCIAKSLLR 121 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 PL SAN SG + I +I I S G STI+ + R Sbjct: 122 ETGPLLTSSANISGFKGSITAEGIALDFPSVKIYGPIPWEKS-SGKASTIIFWKKSGNWR 180 Query: 191 ILRPGGLEIETL 202 ++R G + ++ L Sbjct: 181 LIREGEVLVKEL 192 >gi|325124149|gb|ADY83672.1| putative SUA5/YciO/YrdC/YwlC family protein [Acinetobacter calcoaceticus PHEA-2] Length = 189 Score = 129 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 41/191 (21%), Positives = 70/191 (36%), Gaps = 12/191 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ +A E L G +A PTE V+GL D N A +++ E+K+RP +I IS Sbjct: 3 TTSVTEAAECLQQGQVLAYPTEAVWGLGCDPFNEQAFQKILELKQRPIEKGVILLAGHIS 62 Query: 69 MVKK-HASVDPLSLHLAKLFWP------GPLTLVLDLLSTTDIHPLSTANLKTACFRV-P 120 V+ S+ + W T +L + I RV Sbjct: 63 QVEHLLTSLPQTTQQEIIDCWTNHQPSERATTWLLP--AGEHIPSWIKGEHPLVAVRVTT 120 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L + + SAN SGQ +++ ++G + + S I Sbjct: 121 HPLCVALCNAFHGFIVSTSANPSGQEPAHSLQDAC--QYFGSQLNYLNGDLGQSQQPSRI 178 Query: 181 VNVQCEKKVRI 191 +N + +R Sbjct: 179 INALTREIIRA 189 >gi|15603135|ref|NP_246207.1| hypothetical protein PM1270 [Pasteurella multocida subsp. multocida str. Pm70] gi|81636744|sp|Q9CLG4|RIMN_PASMU RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|12721629|gb|AAK03354.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 183 Score = 129 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 67/183 (36%), Gaps = 8/183 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +++ E L +A PTE V+GL + + +A+++L +K+R LI + Sbjct: 3 IQQIVEQLKQNEVVAYPTEAVFGLGCNPNSESAVQKLLVLKQRSVEKGLILVAPCLDYFL 62 Query: 72 KHAS---VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKL 127 + + P T V+ +TT T + R K+L Sbjct: 63 PFIDTTAFSQADWDRLQAKYDRPTTWVVPAKTTT--PKFLTGQFDSIAVRLCDHPAVKQL 120 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 E G L SAN + + + + + P ++D + + S I ++ + Sbjct: 121 CEQAGFALTSTSANLTTLPPCRTAEEV-KTQFGADFP-VLDLPVGEATNPSEIRDLFTHQ 178 Query: 188 KVR 190 R Sbjct: 179 LFR 181 >gi|188994286|ref|YP_001928538.1| hypothetical protein PGN_0422 [Porphyromonas gingivalis ATCC 33277] gi|188593966|dbj|BAG32941.1| conserved hypothetical protein [Porphyromonas gingivalis ATCC 33277] Length = 200 Score = 129 bits (326), Expect = 5e-28, Method: Composition-based stats. Identities = 50/201 (24%), Positives = 77/201 (38%), Gaps = 12/201 (5%) Query: 3 IMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAM 57 I+ I N L +A L G I PTE Y D+ ++ R+ E+K P Sbjct: 2 IIKIYPDNPNRRELERAVSALRDGKVIIYPTEVGYAYGCDALQNRSVERICELKGVDPRR 61 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 L SD+SM ++ +D + K T VL S+ P N K Sbjct: 62 KNLSIMCSDMSMAAEYCRIDNEAFRYMKDNHMQKYTFVLPAGSSL---PKVFKNRKQVGI 118 Query: 118 RVP-CGFTKKLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIG 175 R+ T+ L E+ G PL S + + ++ + +++DGGI Sbjct: 119 RLALHPLTRLLAESLGSPLLTGSLPLDPETPEYASDPELIEERYGLTVEMVLDGGIIPFE 178 Query: 176 LESTIVNVQCEKKVRILRPGG 196 +T+V+ ILR GG Sbjct: 179 Q-TTVVDCTVS-PYTILREGG 197 >gi|34541326|ref|NP_905805.1| Sua5/YciO/YrdC/YwlC family protein [Porphyromonas gingivalis W83] gi|34397642|gb|AAQ66704.1| Sua5/YciO/YrdC/YwlC family protein [Porphyromonas gingivalis W83] Length = 200 Score = 129 bits (326), Expect = 5e-28, Method: Composition-based stats. Identities = 50/201 (24%), Positives = 77/201 (38%), Gaps = 12/201 (5%) Query: 3 IMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAM 57 I+ I N L +A L G I PTE Y D+ ++ R+ E+K P Sbjct: 2 IIKIYPDNPNRRELERAVSALRDGKVIIYPTEVGYAYGCDALQNRSVERICELKGVDPRR 61 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 L SD+SM ++ +D + K T VL S+ P N K Sbjct: 62 KSLSIMCSDMSMAAEYCRIDNEAFRYMKDNHMQKYTFVLPAGSSL---PKVFKNRKQVGI 118 Query: 118 RVP-CGFTKKLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIG 175 R+ T+ L E+ G PL S + + ++ + +++DGGI Sbjct: 119 RLALHPLTRLLAESLGSPLLTGSLPLDPETPEYASDPELIEERYGLTVEMVLDGGIIPFE 178 Query: 176 LESTIVNVQCEKKVRILRPGG 196 +T+V+ ILR GG Sbjct: 179 Q-TTVVDCTVS-PYTILREGG 197 >gi|291565855|dbj|BAI88127.1| putative translation factor (SUA5) [Arthrospira platensis NIES-39] Length = 203 Score = 129 bits (326), Expect = 5e-28, Method: Composition-based stats. Identities = 53/201 (26%), Positives = 84/201 (41%), Gaps = 16/201 (7%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 ++ ++ A + I PT+TV LA A +++ K+RP PLI Sbjct: 3 KVSQEELIKAAIAGV---AVITFPTDTVPALAARPDKAEA---IFQTKQRPPDKPLILMG 56 Query: 65 SDISMVKKHASVDPLSL----HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 + + + L +A+ +WPG LTLVL S ++ + T RVP Sbjct: 57 ATAESLWQFVDSQTWELECWQQIARQYWPGALTLVLPASSAVP-PAVNPTDPTTIGLRVP 115 Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI-SKIGLES 178 C ++++ G PLA SAN SGQ + V I E+ + + S + S Sbjct: 116 KCEIALEILKRTG-PLATTSANLSGQPPLLTVADIDRQF--PEVLSLKESPPESGSAIPS 172 Query: 179 TIVNVQCEKKVRILRPGGLEI 199 T+V ILR G +E+ Sbjct: 173 TVVRWTKNGDWEILRSGAVEL 193 >gi|170590097|ref|XP_001899809.1| yrdC domain containing protein [Brugia malayi] gi|158592728|gb|EDP31325.1| yrdC domain containing protein [Brugia malayi] Length = 232 Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats. Identities = 60/229 (26%), Positives = 105/229 (45%), Gaps = 20/229 (8%) Query: 2 QIMSITDSN---ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58 +I+ +++S A+ + + ++G +A+PT+TVYG+A N +LY++K+R + Sbjct: 10 KIIRLSESTYSAAICRCLQIFESGGIVALPTDTVYGVATALPNSD---KLYKLKRRSRLK 66 Query: 59 PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 PL VS++ V++ + + + PGP+TL+ + +T + + T R Sbjct: 67 PLGLFVSNVREVQRWCHQT-IDNNQLRTLLPGPVTLIFER--STSLPSIFNPEHGTVGIR 123 Query: 119 VPCG-FTKKLIETY-GHPLAIPSANRS-GQISITNVKHILSSSICKEIPLIIDGGI---- 171 +P F + L+ PLA SAN S Q S ++ + E+ LIID GI Sbjct: 124 IPDHDFVRSLMTRLDDVPLAQTSANISNDQSSPVCIED--FKDLWPELDLIIDDGIVFQR 181 Query: 172 -SKIGLE-STIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETS 218 + E ST+VN+ I+R G T ++ L D Sbjct: 182 DGNVNREGSTVVNLSIPGTYSIIRDGCARTATEEKLRDCGLIGSSDGDC 230 >gi|332968321|gb|EGK07392.1| translation factor RimN [Kingella kingae ATCC 23330] Length = 209 Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats. Identities = 40/182 (21%), Positives = 72/182 (39%), Gaps = 5/182 (2%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 + + L G +A PTE+ YGL N +R L +KKRP +I ++ S + Sbjct: 31 QIAQLRAHLKRGGVVAYPTESCYGLGALPDNVRGLRTLLRLKKRPQHKGMIVIGANWSQL 90 Query: 71 KKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128 + H + + + WP P T++L T + L R+P + L Sbjct: 91 QPHLCRLPCDDVAALQAIWPAPKTVLLPAKPTV-LPNLRGRGRNKLAVRIPAHDIARGLC 149 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 + L S NR+ Q N + + ++ G + + S IV+ +++ Sbjct: 150 QQVQAALVSTSCNRAKQRPCRNEREVRRQF--GRQVYVVGGRVGRRRQPSEIVDWASQQR 207 Query: 189 VR 190 +R Sbjct: 208 IR 209 >gi|261856053|ref|YP_003263336.1| Sua5/YciO/YrdC/YwlC family protein [Halothiobacillus neapolitanus c2] gi|261836522|gb|ACX96289.1| Sua5/YciO/YrdC/YwlC family protein [Halothiobacillus neapolitanus c2] Length = 208 Score = 129 bits (325), Expect = 6e-28, Method: Composition-based stats. Identities = 39/194 (20%), Positives = 80/194 (41%), Gaps = 4/194 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + E L G I +PT++ Y LA + TA+ ++ +I++ + + D+S Sbjct: 14 PRLVTQIAEALSDGSVIVLPTDSGYTLACRLEDKTALAKIAQIRRDNEPHHMTLLCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + +A +D K PGP T +L+ S L A ++ RVP + + Sbjct: 74 EISTYAKLDNQHYRFLKTHTPGPYTFILEATSEVP-RRLLHAKKRSIGLRVPQNTVLRSV 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E P+ S ++ +++ +I+ G ST++++ ++ Sbjct: 133 LEELAAPILSASLVLPDHNEPLEDPEWFPRAVERQVDMIVSTGFHAQN-PSTVIDMTGDE 191 Query: 188 KVRILRP-GGLEIE 200 V + GG+ E Sbjct: 192 FVLVREGLGGIPPE 205 >gi|313679703|ref|YP_004057442.1| translation factor sua5 [Oceanithermus profundus DSM 14977] gi|313152418|gb|ADR36269.1| translation factor SUA5 [Oceanithermus profundus DSM 14977] Length = 197 Score = 129 bits (325), Expect = 6e-28, Method: Composition-based stats. Identities = 50/192 (26%), Positives = 83/192 (43%), Gaps = 13/192 (6%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L G +A PT+T +GL + P A+ R+Y +K R PL V+D++ ++ Sbjct: 12 LRRGGLLAWPTDTTWGLLARADRPEALARIYRVKGRDPAKPLQLLVADLAAARRLLDPGW 71 Query: 79 LSL---HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHP 134 + LA+ FWPG LTLV+ P + + R+P ++L+ G Sbjct: 72 DAAPFERLARAFWPGALTLVVPAGPEA---PEACVHEGKVGLRLPADPELRRLLARAGGY 128 Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194 A S N SG+ + + L + I G + ST+V++ RILR Sbjct: 129 AAATSLNPSGRPPVLRYRDALR---YADWVDRIHPGEAGGTEASTVVDLTV---PRILRE 182 Query: 195 GGLEIETLKRAI 206 G + ++R + Sbjct: 183 GAVPAADVRRLL 194 >gi|139439320|ref|ZP_01772762.1| Hypothetical protein COLAER_01778 [Collinsella aerofaciens ATCC 25986] gi|133775344|gb|EBA39164.1| Hypothetical protein COLAER_01778 [Collinsella aerofaciens ATCC 25986] Length = 247 Score = 129 bits (325), Expect = 7e-28, Method: Composition-based stats. Identities = 58/234 (24%), Positives = 94/234 (40%), Gaps = 37/234 (15%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAV--DSR----------------------NPTAI- 45 A+ + E L G IPTETVYG+AV ++ N A+ Sbjct: 18 AVERTAELLGRGGLALIPTETVYGVAVAVNAFSDAVPQDTSEPLPWPRDPQATVNGAAVP 77 Query: 46 ------RRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDL 98 RR++ +K+R + V D + ++ + + LA+ WPG LT+V+ Sbjct: 78 ALGTGYRRIFTLKQRELTQTVAWLVDDAEALDRYGVDIPNEARVLARRCWPGALTIVVKA 137 Query: 99 LSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSS 157 + A T R + LI G PLA SAN G S + + Sbjct: 138 APC--VPTFMRAADDTVALRASASPVVQALIRACGSPLACTSANTHGAPSPASFAAVEGR 195 Query: 158 SICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELE 211 + + + +D G + STIV+ Q ++ILR G L ++R +S ++ Sbjct: 196 ILEG-VDVAVDAGETPCRDASTIVSFQHGG-LQILRQGALPASEIERVLSDPMQ 247 >gi|123965586|ref|YP_001010667.1| putative translation factor (SUA5) [Prochlorococcus marinus str. MIT 9515] gi|123199952|gb|ABM71560.1| Putative translation factor (SUA5) [Prochlorococcus marinus str. MIT 9515] Length = 193 Score = 129 bits (324), Expect = 8e-28, Method: Composition-based stats. Identities = 50/193 (25%), Positives = 83/193 (43%), Gaps = 8/193 (4%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 + A E L+ GLPI T+T+ + P +Y+IK+R PLI ++ + + Sbjct: 7 KLAVEKLNIGLPIIFHTDTLPAIGCL---PKFSEIIYKIKQRDVKKPLILMGAESFQLNE 63 Query: 73 HAS--VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130 ++A +WPGPLT+++ + + PL + T R+P + Sbjct: 64 FVHKTAFEDYKYMASRYWPGPLTMIIPISEKSK--PLFSNKNLTLGLRIPNSIMANYLIK 121 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 PL SAN SG TN K I +I + G STI++ +K + Sbjct: 122 ESGPLLTSSANISGLPPSTNAKDISFDLPNVDILGPVPWPKC-SGKASTIISWVNNEKWK 180 Query: 191 ILRPGGLEIETLK 203 ++R G + I +K Sbjct: 181 LIREGEVFIPGIK 193 >gi|75907707|ref|YP_322003.1| SUA5/yciO/yrdC-like protein [Anabaena variabilis ATCC 29413] gi|75701432|gb|ABA21108.1| SUA5/yciO/yrdC-like protein [Anabaena variabilis ATCC 29413] Length = 194 Score = 129 bits (324), Expect = 9e-28, Method: Composition-based stats. Identities = 45/186 (24%), Positives = 75/186 (40%), Gaps = 11/186 (5%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 + G ++ PT+TV L + P ++ K+R PLI + + + Sbjct: 13 VRTGGLVSFPTDTVPAL---ATLPEQAGLIFAAKQRSQDKPLILMAASAEDLWPYVEGSE 69 Query: 79 LSLHLAK----LFWPGPLTLVLDLLSTTDIHPLSTA-NLKTACFRVPCGFTKKLIETYGH 133 + + +WPG LTLVL ++ + + + T RVP + I + Sbjct: 70 QDQQIWEQVVSQYWPGALTLVLP--ASKRVPKVMNPIDPTTIGIRVPKNAIAQKILSQTG 127 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 PLA SAN SGQ ++ + I + + IGL ST+ E +ILR Sbjct: 128 PLATTSANFSGQPALLTMAEIDAQFPSVLTLESTALEMEGIGLPSTVAKWTGEN-WQILR 186 Query: 194 PGGLEI 199 G + + Sbjct: 187 QGAVSL 192 >gi|256372569|ref|YP_003110393.1| SUA5/yciO/yrdC domain protein [Acidimicrobium ferrooxidans DSM 10331] gi|256009153|gb|ACU54720.1| SUA5/yciO/yrdC domain protein [Acidimicrobium ferrooxidans DSM 10331] Length = 225 Score = 128 bits (323), Expect = 9e-28, Method: Composition-based stats. Identities = 52/210 (24%), Positives = 89/210 (42%), Gaps = 12/210 (5%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 A R+A LD G + +PT+TV GL + + A+ R+ +K R P V I Sbjct: 20 EAFRRAATILDGGSVLLMPTDTVPGLVGSATSRRALERIAVLKGRSTTTPPPVLVGSIDE 79 Query: 70 VKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128 +A S L WPGP++ V+D + D+ + ++ RVP + Sbjct: 80 ALAYAEPRRRSRLRALGALWPGPISAVVDAPTLADV---VNPSGRSVALRVPDVEWLAEL 136 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSS------ICKEIPLIIDGGISKIGLESTIVN 182 G PLA SAN G + ++V L+ + + ++ + STIV+ Sbjct: 137 -ATGRPLAASSANWHGVATPSDVDTALADLVAHGSPVAGRLAGVLWAPGPSGRVASTIVD 195 Query: 183 VQCEKKVRILRPGGLEIETLKRAISVELEY 212 + +VR+LR G + ++ + +E Sbjct: 196 LTG-PQVRVLRQGAVAPSDVEAVLGEPVEV 224 >gi|91069910|gb|ABE10839.1| conserved hypothetical protein [uncultured Prochlorococcus marinus clone ASNC2150] Length = 193 Score = 128 bits (323), Expect = 9e-28, Method: Composition-based stats. Identities = 51/192 (26%), Positives = 81/192 (42%), Gaps = 8/192 (4%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 + A + L +GLPI PT+T+ + P +YE KKR PLI S+ + Sbjct: 7 KSALKTLKSGLPIIFPTDTLPAIGCL---PKFSNIIYEFKKRDRDKPLILMGSEHKQLID 63 Query: 73 HASVD--PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130 + ++A +WPG LT+V+ + T+N T R+P + + + Sbjct: 64 YVHESAKEDYENIASKYWPGALTMVIPASEKQT--TILTSNDLTLGLRIPNSYMAQSLMR 121 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 PL SAN SG V+ I +I I G + G STI+ + R Sbjct: 122 ETGPLLTSSANISGFKGSITVEGIALDFPTLKILGPIPWGK-RSGKASTIIFWKKSGDWR 180 Query: 191 ILRPGGLEIETL 202 ++R G + + L Sbjct: 181 LIRQGEVLVREL 192 >gi|118489827|gb|ABK96713.1| unknown [Populus trichocarpa x Populus deltoides] Length = 313 Score = 128 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 45/210 (21%), Positives = 80/210 (38%), Gaps = 19/210 (9%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 +D+ L E L G IPT+TVY + D ++ +AI RL IK PL Sbjct: 82 SDTWKLEPVIELLKQGAVGVIPTDTVYAIVCDLKSNSAIERLRRIKNIEPSKPLSILCHS 141 Query: 67 ISMVKKHASVDPLS--------LHLAKLFWPGPLTLVLDLLSTTD---IHPLST----AN 111 + + + + P K PGP T +L + +T A+ Sbjct: 142 LRDIDTYTTGFPRGDGQGHADIFRAVKHCLPGPYTFILTASKELPKQCVRFGTTTAKYAS 201 Query: 112 LKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSIC-KEIPLIIDG 169 K R+P + ++E PL S + +++ + + +++G Sbjct: 202 RKNVGIRMPDDAICQAILEKMDAPLISTSVRSPKENEWMIDPVVIADIYGLEGLDFVVNG 261 Query: 170 GISKIGLESTIVNVQCEKKVRILRPGGLEI 199 GI ++ ST+V++ +I+R G Sbjct: 262 GI-RVADPSTVVDMTGSSP-KIIRQGKGPK 289 >gi|229816322|ref|ZP_04446629.1| hypothetical protein COLINT_03372 [Collinsella intestinalis DSM 13280] gi|229808078|gb|EEP43873.1| hypothetical protein COLINT_03372 [Collinsella intestinalis DSM 13280] Length = 214 Score = 128 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 95/205 (46%), Gaps = 18/205 (8%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIR-----------RLYEIKKRPAMNPLICH 63 A + L AG +PTETVYG+ V + + A R++ +K+R + Sbjct: 14 AADCLTAGGLALVPTETVYGVGV-AISAFAANLETPGPDTGYGRIFTLKQRELTQTVPWL 72 Query: 64 VSDISMVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 V + ++++ P S+ LA+ WPG LTLV+ + D+ A T R Sbjct: 73 VDGPAALERYGKDVPHSICALAEKLWPGALTLVVP--AADDVPSFMRAADGTVALRASAS 130 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 ++LI G PLA+ SAN G+ + + + + + + +D G + STIV Sbjct: 131 PVVQELIARCGSPLAVTSANTHGKPAPISFDEVEPRILAG-VDVAVDAGETPCRDASTIV 189 Query: 182 NVQCEKKVRILRPGGLEIETLKRAI 206 V+ + +++ILR G L + ++ + Sbjct: 190 AVR-DGELQILREGALAVREIRAVL 213 >gi|254166891|ref|ZP_04873745.1| Sua5/YciO/YrdC/YwlC family protein [Aciduliprofundum boonei T469] gi|197624501|gb|EDY37062.1| Sua5/YciO/YrdC/YwlC family protein [Aciduliprofundum boonei T469] Length = 180 Score = 128 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 49/195 (25%), Positives = 91/195 (46%), Gaps = 17/195 (8%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + K E+ P+ +PT+T+YGL + I ++Y+IK R + V++I M+ Sbjct: 1 MDKIAEYAKN-EPVVMPTDTLYGLCMSIDGD--INKIYKIKGRSIEKKIPVGVANIEMMG 57 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETY 131 K A + P + L + F PGPLTLVL + T R+P + Sbjct: 58 KIAEITPEAEKLIRAFMPGPLTLVLRNKGVKWL-------GDTVAVRIPAHTLTIYLMEK 110 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 P+ + SAN SG+ + + ++ ++ ++ +D G +G STI+ + V + Sbjct: 111 IGPITLTSANISGEKAPS----VIEDTMKLDVKYRLDCGR-LMGKPSTIIRLVDG--VEL 163 Query: 192 LRPGGLEIETLKRAI 206 +R G + + ++ R + Sbjct: 164 IREGAIPMASIMRIL 178 >gi|289547987|ref|YP_003472975.1| Sua5/YciO/YrdC/YwlC family protein [Thermocrinis albus DSM 14484] gi|289181604|gb|ADC88848.1| Sua5/YciO/YrdC/YwlC family protein [Thermocrinis albus DSM 14484] Length = 201 Score = 128 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 55/207 (26%), Positives = 98/207 (47%), Gaps = 15/207 (7%) Query: 6 ITDSNALRKACEFLDAGLPIAI-PTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 + + + + E + G IA PT+T+YGL ++ + A+ RL+ I +RP+ P + + Sbjct: 4 VVSPSKVFRVAEVILEGG-IAFAPTDTIYGLLANALDRRAVERLFAI-RRPSGRPFLLLI 61 Query: 65 SDISMVKKHASVD-PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-- 121 +++ + P L L +TLV+ T + T K+ R+P Sbjct: 62 PQEDWIEELGLIIGPRQRKLLSL----GITLVIP--KRTSVPLYLTRGRKSLAVRLPSST 115 Query: 122 -GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 GF + L++ G PL PSAN G T+VK + + + + + +D G +G STI Sbjct: 116 AGFIRDLLKVVGVPLVAPSANPEGLKPATSVKEGM-AYFGRRVNIYVDAGK-IVGKPSTI 173 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAIS 207 V + + VR++R G + + R +S Sbjct: 174 VRLIGYRSVRLVREGNVPFREVLRFLS 200 >gi|326331013|ref|ZP_08197312.1| Sua5/YciO/YrdC/YwlC family protein [Nocardioidaceae bacterium Broad-1] gi|325951224|gb|EGD43265.1| Sua5/YciO/YrdC/YwlC family protein [Nocardioidaceae bacterium Broad-1] Length = 209 Score = 128 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 71/192 (36%), Gaps = 4/192 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + + L IA PT++ Y L N R+ I+ + D + Sbjct: 14 PRLISQVVDALRDDQLIAYPTDSGYALGSRIGNKDGRDRILRIRGLDDRHHFTLICKDFA 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + VD + K PGP T +L L KT R+P + L Sbjct: 74 QLGTMVHVDNSAFRAIKHATPGPYTFILPATPEVP-RRLMHPKKKTVGVRIPEHAVVQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G PL + G+ + ++ ++ ++I+ G + +T+++ + Sbjct: 133 LEELGEPLLSSTLILPGETEPEVFGWNVKEALDHQVDIVIEAGETPA-EPTTVIDW-SDG 190 Query: 188 KVRILRPGGLEI 199 + I+R G ++ Sbjct: 191 QPEIIRQGAGDV 202 >gi|309379826|emb|CBX21602.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 166 Score = 128 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 39/168 (23%), Positives = 70/168 (41%), Gaps = 5/168 (2%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-L 83 +A PTE+ YGL A+ +L +KKRP +I + ++ + SL + Sbjct: 2 VAYPTESCYGLGCLPTLAKALGKLAHLKKRPQHKGMIVIGNQFEQLQPLLQMPSESLQAM 61 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANR 142 + WP P T +L + + L R+P ++L + G PL S NR Sbjct: 62 LRKEWPAPKTFLLS-AKSCVLPELRGKQRSKLAVRIPDHAGARRLCQALGMPLVSTSCNR 120 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 +G+ + + + I+ G I + S I++ + K++R Sbjct: 121 AGKRACRTEREVRRQF--GRDVWIVGGRIGRQKSPSQIIDGETGKRLR 166 >gi|157412681|ref|YP_001483547.1| putative translation factor (SUA5) [Prochlorococcus marinus str. MIT 9215] gi|157387256|gb|ABV49961.1| Putative translation factor (SUA5) [Prochlorococcus marinus str. MIT 9215] Length = 193 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 51/192 (26%), Positives = 83/192 (43%), Gaps = 8/192 (4%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 + A + L +GLPI PT+T+ + P +YE KKR PLI ++ + Sbjct: 7 KSALKTLKSGLPIIFPTDTLPAIGCL---PEFSNIIYEFKKRDKDKPLILMGAEHKQLID 63 Query: 73 HASVDPL--SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130 + + ++A +WPG LT+V+ T + T+N T R+P + + + Sbjct: 64 YVNESAKKDYENIASKYWPGALTMVIPASETHT--TIITSNDLTLGLRIPNSYMAQSLIR 121 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 PL SAN SG V+ I +I I G G STI+ + R Sbjct: 122 ETGPLLTSSANLSGFKGSITVEGISQDFPSVKILGPIPWGK-ISGKASTIIFWKKSGDWR 180 Query: 191 ILRPGGLEIETL 202 ++R G + ++ L Sbjct: 181 LIREGEVLVKEL 192 >gi|315604269|ref|ZP_07879335.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 180 str. F0310] gi|315313975|gb|EFU62026.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 180 str. F0310] Length = 205 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 38/204 (18%), Positives = 75/204 (36%), Gaps = 8/204 (3%) Query: 1 MQIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56 M + + N + + L+ G IA+PT++ Y +A N + + I+K Sbjct: 1 MSYVEMHPENPQARLVSTVVDLLERGGTIALPTDSGYAIATKIGNKAGMDTIRAIRKLDD 60 Query: 57 MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 + + + + +D K PGP T +L L+ T Sbjct: 61 KHNFSLLCHSFAQLGELVLIDNHEFRTMKALTPGPYTFILRGTKEVPRIMLNKKKH-TVG 119 Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R+P T+ ++ G PLA + G+ + I ++ L++ G + Sbjct: 120 VRIPDHVITQAIVGALGEPLACSTLIMPGEEEPLTDGFDVDERIGHQVDLVVVG-PVGVA 178 Query: 176 LESTIVNVQCEKKVRILRPGGLEI 199 +T++N V + R G ++ Sbjct: 179 EPTTVINFAGGDAV-VARVGAGDV 201 >gi|317968708|ref|ZP_07970098.1| translation factor [Synechococcus sp. CB0205] Length = 195 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 51/191 (26%), Positives = 84/191 (43%), Gaps = 11/191 (5%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A E L G PT+T+ L + P L+ IK+RP P+I +D + + Sbjct: 11 AAE-LQQGQAGVFPTDTLPAL---ATRPEHASLLWTIKERPQNKPVILMGADAEQLFSNL 66 Query: 75 SVDPLS--LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETY 131 + P L L + WPG LTLV+ + + RVP C ++L+ Sbjct: 67 GMTPEPSWLRLMEQHWPGALTLVVP--AEGERLEQLNPGGSALGLRVPACEQARELLRLS 124 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 G PLA S NRSG+ T+ + + + + + L + + G ST++ ++ R+ Sbjct: 125 G-PLATTSTNRSGEDPCTSAEEV-QARFPQLLRLAPEPWPAPSGQASTVIALEPGGGWRL 182 Query: 192 LRPGGLEIETL 202 LR G + + L Sbjct: 183 LRAGAVMPQEL 193 >gi|262376934|ref|ZP_06070161.1| YrdC [Acinetobacter lwoffii SH145] gi|262308279|gb|EEY89415.1| YrdC [Acinetobacter lwoffii SH145] Length = 189 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 37/191 (19%), Positives = 71/191 (37%), Gaps = 12/191 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ +A +L G +A PTE V+GL D N A ++ E+K+RP +I + +S Sbjct: 3 TTSVAEAAAWLKDGQVLAYPTEAVWGLGCDPYNEQAFHQILELKQRPIEKGVILLAAHLS 62 Query: 69 MVKK-HASVDPLSLHLAKLFWP------GPLTLVLDLLSTTDIHPLSTANLKTACFRV-P 120 V+ + W T +L + DI + RV Sbjct: 63 QVEHLLQDLSEEMREKVIETWKHDRPAERATTWLLP--ANKDIPDWIKGHHPKVAVRVTT 120 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L + +G + SAN +G +++ + + ++G + S I Sbjct: 121 HPLCVALCQAFGGFIVSTSANPAGMEPARSLQDAIR--YFDQNLNYLNGDLGLSQQPSRI 178 Query: 181 VNVQCEKKVRI 191 ++ +R Sbjct: 179 IDAVTGAIIRD 189 >gi|253998091|ref|YP_003050154.1| SUA5/yciO/yrdC domain-containing protein [Methylovorus sp. SIP3-4] gi|313200156|ref|YP_004038814.1| sua5/ycio/yrdc domain-containing protein [Methylovorus sp. MP688] gi|253984770|gb|ACT49627.1| SUA5/yciO/yrdC domain protein [Methylovorus sp. SIP3-4] gi|312439472|gb|ADQ83578.1| SUA5/yciO/yrdC domain protein [Methylovorus sp. MP688] Length = 181 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 41/181 (22%), Positives = 68/181 (37%), Gaps = 6/181 (3%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 R+ +L G IA PTE+ +GL D + ++R+ +K RP LI + K+ Sbjct: 5 RELRHYLRHGGVIAYPTESCFGLGCDPHSRLGVQRILRLKGRPQRKGLILIGDQQTRFKR 64 Query: 73 H-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130 A + P WPGP T ++ I + RV + +L Sbjct: 65 LIAPLSPEQQARVATTWPGPHTWLVPHAEDCPI--WLHGRHPSLAVRVTAHPLSARLCRM 122 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G L SAN++G + + + +I G STI ++ + +R Sbjct: 123 AGMALVSTSANKAGHAPAKTTRKC--RQLFGQRVRVIAGLTGGARKPSTIQDLITGRILR 180 Query: 191 I 191 Sbjct: 181 P 181 >gi|168009850|ref|XP_001757618.1| predicted protein [Physcomitrella patens subsp. patens] gi|162691312|gb|EDQ77675.1| predicted protein [Physcomitrella patens subsp. patens] Length = 154 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 44/149 (29%), Positives = 72/149 (48%), Gaps = 1/149 (0%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + ++A L IA+PT+T+YGLA D+ + AIRR+YEIK+R +PL VS Sbjct: 1 MAREEHYKEAVRALGNEQVIAVPTDTLYGLACDASSAEAIRRVYEIKERKLSSPLAVCVS 60 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124 D+ +V + L L PG +TL+L + + + R+P F Sbjct: 61 DVDVVAAYGETAQLPAGLLNALLPGAVTLLLPRREPGFLSASLNPGIGSIGIRIPDSDFI 120 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKH 153 + + ++G +A+ SAN S S ++ Sbjct: 121 RGVARSFGGAVALTSANTSSHASTVRIEE 149 >gi|297832740|ref|XP_002884252.1| yrdC family protein [Arabidopsis lyrata subsp. lyrata] gi|297330092|gb|EFH60511.1| yrdC family protein [Arabidopsis lyrata subsp. lyrata] Length = 305 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 47/209 (22%), Positives = 75/209 (35%), Gaps = 19/209 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 DS L+ E L G IPT+TVY L D +N +A+ RL IKK + PL + Sbjct: 77 DSWKLQPVIELLKQGAVGVIPTDTVYALVCDCKNHSAVERLRRIKKIESSKPLSILCRSL 136 Query: 68 SMVKKH--------ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIH-------PLSTANL 112 + A K PGP T +L + A+ Sbjct: 137 RDIDTFTMGFPRGDAHGHANVFRAVKQCLPGPYTFILTASKELPKQCVGYGTTSVKYASR 196 Query: 113 KTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKE-IPLIIDGG 170 K R+ + ++ PL S + + E + ++DGG Sbjct: 197 KYVGVRISDDPLCQAILHEMDAPLISTSVKGPKENEWMIDPTAIGDIYGPEGLDFLVDGG 256 Query: 171 ISKIGLESTIVNVQCEKKVRILRPGGLEI 199 + ++ STIV++ +++R G I Sbjct: 257 V-RVAEPSTIVDMTGPYP-KVIRQGKGPI 283 >gi|225451447|ref|XP_002273946.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|296082345|emb|CBI21350.3| unnamed protein product [Vitis vinifera] Length = 306 Score = 127 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 49/215 (22%), Positives = 84/215 (39%), Gaps = 23/215 (10%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 S TDS L + L G IPT+TVY + R+ +AI RL IK A PL Sbjct: 72 SGTDSWKLEPVADLLKEGAVGVIPTDTVYAIVCHLRSHSAIERLRRIKDIEASKPLSILC 131 Query: 65 SDISMVKKHASVDP--------LSLHLAKLFWPGPLTLVLDLLSTTDIHPLST------- 109 + + + + P K PGP T +L ++ ++ T Sbjct: 132 RSLRDIDTYTTGFPCGIGQGQTNIFRAVKHCLPGPYTFILT--ASKELPKQCTRYGTTTA 189 Query: 110 --ANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKE-IPL 165 A+ K R+P K +++ PL S + ++ E + Sbjct: 190 KYASRKNVGVRMPDDAICKAILQMMDAPLIATSVKSPKENEWMLDPITIADVYGPEGLDF 249 Query: 166 IIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200 ++DGG+ ++ ST+V++ + +I+R G + Sbjct: 250 VVDGGV-RVADPSTVVDMTG-RTPKIIRQGKGPKQ 282 >gi|262276080|ref|ZP_06053889.1| YrdC family protein [Grimontia hollisae CIP 101886] gi|262219888|gb|EEY71204.1| YrdC family protein [Grimontia hollisae CIP 101886] Length = 163 Score = 127 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 60/156 (38%), Gaps = 4/156 (2%) Query: 41 NPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS 100 N A+ R+ I++ + D+S + +A VD + L + PG T +L Sbjct: 3 NKQALERICRIRRLDDKHNFTLMCRDLSELSLYARVDNSAYRLIRNNTPGRYTFILKATK 62 Query: 101 TTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSI 159 L KT RVP L++ G P+ S G + + + Sbjct: 63 EVP-RRLLNPKRKTIGIRVPDNQIALDLLDALGEPMMSTSLILPGNEHTESDPEAIRDQL 121 Query: 160 CKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 + I++GG +T+V++ + + ILR G Sbjct: 122 EHAVDCILNGGYLGE-QPTTVVDM-SDGEPNILRRG 155 >gi|293611139|ref|ZP_06693437.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292826390|gb|EFF84757.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 189 Score = 127 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 39/191 (20%), Positives = 70/191 (36%), Gaps = 12/191 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ +A + L G +A PTE V+GL D N A +++ E+K+RP +I I+ Sbjct: 3 TTSVTEAAQCLQQGQVLAYPTEAVWGLGCDPFNEQAFQKILELKQRPIEKGVILLAGHIN 62 Query: 69 MVKK-HASVDPLSLHLAKLFWP------GPLTLVLDLLSTTDIHPLSTANLKTACFRV-P 120 V+ S+ + W T +L + I RV Sbjct: 63 QVEHLLTSLPQTTQQEIIDCWTNHQPSERATTWLLP--AGEHIPSWIKGEHPLVAVRVTT 120 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L + + SAN SGQ +++ ++G + + S I Sbjct: 121 HPLCVALCNAFHGFIVSTSANPSGQEPAHSLQDAC--QYFGSQLNYLNGDLGQSQQPSRI 178 Query: 181 VNVQCEKKVRI 191 +N + +R Sbjct: 179 INALTREIIRA 189 >gi|241767112|ref|ZP_04764882.1| SUA5 domain protein [Acidovorax delafieldii 2AN] gi|241362315|gb|EER58317.1| SUA5 domain protein [Acidovorax delafieldii 2AN] Length = 165 Score = 127 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 43/164 (26%), Positives = 69/164 (42%), Gaps = 9/164 (5%) Query: 165 LIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISV-ELEYCVDETSTPQSP 223 L++DGG +G+ESTIV+ V +LRPG + + A + L TP++ Sbjct: 2 LVLDGGPCAVGIESTIVDCTRGVPV-LLRPGAITRAQIAAACGLQPLSKEELPAHTPRAS 60 Query: 224 GMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKT-------GKLK 276 G L++HYAP ++VRL + + + + S + Sbjct: 61 GTLEAHYAPAAKVRLMDAAALQTALDLLGADAAHIAVYARTMPRTQSTRLVMRRMPDDAE 120 Query: 277 EAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 A LF ++ DD G I + P + +RL+RAAA Sbjct: 121 ATAQQLFAALRAFDDQGVKLIWIETPPATAAWEGVRDRLQRAAA 164 >gi|55379248|ref|YP_137098.1| DNA-binding protein [Haloarcula marismortui ATCC 43049] gi|55231973|gb|AAV47392.1| DNA binding protein [Haloarcula marismortui ATCC 43049] Length = 210 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 48/185 (25%), Positives = 82/185 (44%), Gaps = 8/185 (4%) Query: 23 LPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH 82 + PTETVYGL D+ + A+ R+++ K R P+ V DI +++ + L Sbjct: 31 KLVVYPTETVYGLGADALDAAAVERVFDAKGRERDKPVSLAVPDIESAREYTRLSDRELA 90 Query: 83 LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANR 142 + F PGP+T+V++ + + A RVP + PL SAN Sbjct: 91 FMREFLPGPVTVVVERRDV--VPDVLVAGQDRVGVRVPDHDLALELLAETGPLTATSANI 148 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202 SG S+ V + +I + +++D G + G ST+VNV + G + + Sbjct: 149 SGNPSVRTVDDL--DAIRERAAVVLDAGETDGGTGSTVVNVDSG----TIHRRGARADAV 202 Query: 203 KRAIS 207 K ++ Sbjct: 203 KSWLN 207 >gi|210634580|ref|ZP_03298176.1| hypothetical protein COLSTE_02098 [Collinsella stercoris DSM 13279] gi|210158765|gb|EEA89736.1| hypothetical protein COLSTE_02098 [Collinsella stercoris DSM 13279] Length = 220 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 60/211 (28%), Positives = 86/211 (40%), Gaps = 16/211 (7%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGL----------AVDSRNPTAIRRLYEIKKRPAM 57 D L A + L AG +PTETVYG+ + T R++ +K R Sbjct: 12 DEEQLASAAKRLLAGDLALLPTETVYGVGVAVNAYLDSGGLPGSETGYGRIFTLKHRDTS 71 Query: 58 NPLICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 + V + ++ ASV LA WPG LTLV+ + + A T Sbjct: 72 QTVPWLVDGPDALDRYGASVPDAIRTLAAECWPGALTLVVP--AAARVPHFMRAADGTVA 129 Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 R + LI G PLA+ SAN G + + + + + L +D G + Sbjct: 130 LRASASPVIQDLIRATGSPLAVTSANTHGYPAPASFAEVEPRILEG-VDLAVDAGETACR 188 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAI 206 STIV V+ V ILR G L ET+ R + Sbjct: 189 DASTIVAVRDGAPV-ILRQGALPAETIARLL 218 >gi|33860877|ref|NP_892438.1| hypothetical protein PMM0319 [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33633819|emb|CAE18778.1| conserved hypothetical protein [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 194 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 58/202 (28%), Positives = 87/202 (43%), Gaps = 11/202 (5%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 M++ D + A E L++G PI T+T+ + P +Y+IKKR PLI Sbjct: 1 MNVIDQ---KLALEKLNSGSPIVFQTDTLPAIGCL---PKFSEMIYKIKKRDIKKPLILM 54 Query: 64 VSDISMVKKHASVDPLS--LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 ++ L ++A +WPGPLT+++ S ST+N T R+P Sbjct: 55 GAENFEFDDFVHESALGDFKYIASCYWPGPLTIIIP-CSEKRRSFSSTSNF-TLGLRIPN 112 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 KL+ PL SAN SG + T+ K I + I I G STI+ Sbjct: 113 SKMAKLLLKESGPLLTSSANLSGLPTATSAKEISVNLPNVNILGPIPWEKC-SGKASTII 171 Query: 182 NVQCEKKVRILRPGGLEIETLK 203 K +I+R G + I +K Sbjct: 172 TWVNHGKWKIIREGEVSIPGIK 193 >gi|33241612|ref|NP_876553.1| SUA5 protein [Chlamydophila pneumoniae TW-183] gi|33236120|gb|AAP98210.1| SUA5 protein [Chlamydophila pneumoniae TW-183] Length = 286 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 53/204 (25%), Positives = 86/204 (42%), Gaps = 17/204 (8%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 +L + + G +A+PT+TVYG + P A RLY +K R +V+ I + Sbjct: 11 SLPEVMSAIHQGKIVALPTDTVYGFVLSLYAPEAEERLYALKDREPSKAFALYVNSIEDI 70 Query: 71 KKHA--SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + + P + LA+LF PG +TLV+ H +T FR+ +++ Sbjct: 71 ENISGYPLSPTAKKLAQLF-PGAITLVVK-------HRNPRFPKETLAFRIVDHSVVREI 122 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ G L SAN S S + I + L I G GLEST+V Sbjct: 123 VDHCGT-LIGTSANLSEFPSALTAQEIFADFADH--DLCIFDGPCSHGLESTVV---ASD 176 Query: 188 KVRILRPGGLEIETLKRAISVELE 211 + I R G + ++ E + Sbjct: 177 PLYIYREGLISRSVIENIAGTEAK 200 >gi|17227612|ref|NP_484160.1| hypothetical protein alr0116 [Nostoc sp. PCC 7120] gi|17135094|dbj|BAB77640.1| alr0116 [Nostoc sp. PCC 7120] Length = 194 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 47/189 (24%), Positives = 77/189 (40%), Gaps = 19/189 (10%) Query: 21 AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS----V 76 AG ++ PT+TV L + P ++ K+R PLI + + + Sbjct: 15 AGGLVSFPTDTVPAL---ATLPEQAELIFAAKQRSQDKPLILMGASAEDLWPYVEGREQD 71 Query: 77 DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLA 136 + + +WPG LTLV+ ++ + T RVP + I + PLA Sbjct: 72 KQIWEQVVSQYWPGALTLVVPASKRVPEV-MNPIDPTTIGIRVPKSAIAQKILSQTGPLA 130 Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS-----KIGLESTIVNVQCEKKVRI 191 SAN SGQ ++ + I + P ++ + IGL ST+ E +I Sbjct: 131 TTSANFSGQPALLTMAEI-----DAQFPTVLTLESTAVEAEGIGLPSTVAKWTGEN-WQI 184 Query: 192 LRPGGLEIE 200 LR G + +E Sbjct: 185 LRQGAVSLE 193 >gi|119486656|ref|ZP_01620706.1| hypothetical protein L8106_12935 [Lyngbya sp. PCC 8106] gi|119456273|gb|EAW37405.1| hypothetical protein L8106_12935 [Lyngbya sp. PCC 8106] Length = 201 Score = 126 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 50/199 (25%), Positives = 84/199 (42%), Gaps = 18/199 (9%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + L +A + ++ PT+TV LAV + ++++K+R A PLI + Sbjct: 7 DTLVEAA--ISGDQVVSFPTDTVPALAVQPQQAE---LIFQLKQRSADKPLILMGATPES 61 Query: 70 VKKHAS--VDPLSL--HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125 + V+ L + +A+ +WPG LTLVL ++ ++ T R+P Sbjct: 62 LWPFVQGTVEELQVWSQMARQYWPGALTLVLPASEKVP-RAMNPSDPTTIGLRIPNAEIS 120 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI-----GLESTI 180 + I PLA SAN SGQ + + I +D G K+ + ST+ Sbjct: 121 RAILQRTGPLATTSANLSGQPPLLTMAEIEVQF---PQVFTLDPGELKVVSEVSCVPSTV 177 Query: 181 VNVQCEKKVRILRPGGLEI 199 + E ILR G + + Sbjct: 178 IKWNREGTWNILRQGAVTV 196 >gi|330889220|gb|EGH21881.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. mori str. 301020] Length = 141 Score = 126 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 3/117 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E + AG + PT++ Y L + +AI R+ +++ + D+S Sbjct: 27 PRLIKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLS 86 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCGFT 124 + A VD + K PGP T +L+ +T ++ L +T RVP Sbjct: 87 QLGLFAKVDTGAFRALKAHTPGPYTFILN--ATREVPRLVLHPKRRTIGLRVPSHPI 141 >gi|190150467|ref|YP_001968992.1| hypothetical protein APP7_1198 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|189915598|gb|ACE61850.1| hypothetical protein APP7_1198 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] Length = 204 Score = 126 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 43/194 (22%), Positives = 73/194 (37%), Gaps = 12/194 (6%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 I + N L E L +A PTE V+GL + N +A+R L ++KKRP LI Sbjct: 15 IYLVKKMNNLENIVEQLKRNRVVAYPTEAVFGLGCNPNNESAVRALLKLKKRPEEKGLIL 74 Query: 63 HVSDISMVKKHASVDPLSLHLAKLF-WP--GPLTLVLDLLSTTDIHPLSTANLKTACFR- 118 ++ + + L+ ++F P +T V+ + + T T R Sbjct: 75 IAPTKELLLPYIDENKLTAAHWQIFETPSERAITWVMP--AKKAVPQYLTGQFDTIAVRL 132 Query: 119 --VPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 +P L E G L S N +GQ + + P +++ + Sbjct: 133 CCIPA--VIDLCERTGFALTSTSCNLTGQEPCRTADEV-KLQFGADFP-VLEAETAGKTN 188 Query: 177 ESTIVNVQCEKKVR 190 S I ++ + R Sbjct: 189 PSEIRDIFTQHIFR 202 >gi|255020863|ref|ZP_05292919.1| hypothetical protein ACA_1085 [Acidithiobacillus caldus ATCC 51756] gi|254969654|gb|EET27160.1| hypothetical protein ACA_1085 [Acidithiobacillus caldus ATCC 51756] Length = 186 Score = 126 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 44/182 (24%), Positives = 75/182 (41%), Gaps = 6/182 (3%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 LRKA L G IA PTE V+GL D R A+R + +KKRP ++ + S Sbjct: 10 DLRKAVALLRHGQVIAYPTEGVWGLGCDPRRRPALRHILRLKKRPQHKGVLLIAATRSQA 69 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIE 129 + A +D + + +WPG TLVL + + RV ++L Sbjct: 70 ARFADLDAVEEQVLGRYWPG-TTLVLP--ARKEAAAWLRGQHGGIAIRVTHHEASRRLCR 126 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 ++G + SAN +G + +++ L + + + S I++ + + Sbjct: 127 SFGRAIVSTSANPAGLQAARDLRT-LKRYFGARV-WALPARLGGQRRPSRIIDAVTGRIL 184 Query: 190 RI 191 R Sbjct: 185 RS 186 >gi|269303145|gb|ACZ33245.1| Sua5/YciO/YrdC/YwlC family protein [Chlamydophila pneumoniae LPCoLN] Length = 286 Score = 126 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 51/204 (25%), Positives = 85/204 (41%), Gaps = 17/204 (8%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 +L + + G +A+PT+TVYG + A RLY +K R +V+ I + Sbjct: 11 SLPEVMSAIHQGKIVALPTDTVYGFVLSLYASEAEERLYALKDREPSKAFALYVNSIEDI 70 Query: 71 KKHA--SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + + P + LA+LF PG +TLV+ H +T FR+ +++ Sbjct: 71 ENISGYPLSPTAKKLAQLF-PGAITLVVK-------HRNPRFPKETLAFRIVDHSVVREI 122 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ G L SAN S S + + + L I G GLEST+V Sbjct: 123 VDHCGT-LIGTSANLSEFPSALTAQEVFADFADH--DLCIFDGPCSHGLESTVV---ASD 176 Query: 188 KVRILRPGGLEIETLKRAISVELE 211 + I R G + ++ E + Sbjct: 177 PLYIYREGLISRSVIENIAGTEAK 200 >gi|307246055|ref|ZP_07528137.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307250396|ref|ZP_07532343.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307252778|ref|ZP_07534669.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307255037|ref|ZP_07536855.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259473|ref|ZP_07541198.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307263811|ref|ZP_07545417.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|306852990|gb|EFM85213.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306857525|gb|EFM89634.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306859810|gb|EFM91832.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306861910|gb|EFM93886.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866409|gb|EFM98272.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306870932|gb|EFN02670.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 187 Score = 126 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 42/187 (22%), Positives = 71/187 (37%), Gaps = 12/187 (6%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 N L E L +A PTE V+GL + N +A+R L ++KKRP LI + Sbjct: 5 NNLENIVEQLKRNRVVAYPTEAVFGLGCNPNNESAVRALLKLKKRPEEKGLILIAPTKEL 64 Query: 70 VKKHASVDPLSLHLAKLF-WP--GPLTLVLDLLSTTDIHPLSTANLKTACFR---VPCGF 123 + + + L+ ++F P +T V+ + + T T R +P Sbjct: 65 LLPYIDENKLTAAHWQIFETPSERAITWVMP--AKKAVPQYLTGQFDTIAVRLCCIPA-- 120 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 L E G L S N +GQ + + P +++ + S I ++ Sbjct: 121 VIDLCERTGFALTSTSCNLTGQEPCRTADEV-KLQFGADFP-VLEAETAGKTNPSEIRDI 178 Query: 184 QCEKKVR 190 + R Sbjct: 179 FTQHIFR 185 >gi|126657314|ref|ZP_01728473.1| hypothetical protein CY0110_00105 [Cyanothece sp. CCY0110] gi|126621301|gb|EAZ92013.1| hypothetical protein CY0110_00105 [Cyanothece sp. CCY0110] Length = 199 Score = 126 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 54/189 (28%), Positives = 76/189 (40%), Gaps = 16/189 (8%) Query: 20 DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL 79 G I+ PT+TV LA P + ++ KKRP PLI S + K+ P Sbjct: 14 KEGKVISFPTDTVPALAAL---PESASLIFATKKRPPDKPLILMGSSSEAIWKYVKGTPE 70 Query: 80 SLHLAK----LFWPGPLTLVLDLLSTTD--IHPLSTANLKTACFRVPCGFTKKLIETYGH 133 + + +WPG LTLVL I+PL + T R+P + I Sbjct: 71 EFRIWEKIVNKYWPGQLTLVLPASELVPQGINPLDPS---TIGVRIPNSIIAQNILKQTG 127 Query: 134 PLAIPSANRSGQISITNVKH---ILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 LA SAN SG+ I N+ I + LI + GL ST+ Sbjct: 128 CLATTSANLSGEPPIENLSDIALIFPDVLVLNEELIKNQKKYGSGLPSTVAKWTNRG-WE 186 Query: 191 ILRPGGLEI 199 ILR G +++ Sbjct: 187 ILRQGSIQL 195 >gi|198284016|ref|YP_002220337.1| SUA5/yciO/yrdC domain [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666682|ref|YP_002426660.1| Sua5/YciO/YrdC family protein [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248537|gb|ACH84130.1| SUA5/yciO/yrdC domain [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518895|gb|ACK79481.1| Sua5/YciO/YrdC family protein [Acidithiobacillus ferrooxidans ATCC 23270] Length = 186 Score = 126 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 39/182 (21%), Positives = 70/182 (38%), Gaps = 6/182 (3%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 +R+ + G IA PTE V+GL D R A+ R+ +K RP ++ + Sbjct: 10 DIRRGVAHIRRGGVIAYPTEGVWGLGCDPRRRRALHRILALKGRPRFKGVLLVAGRTAET 69 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-KLIE 129 +++ S L FWPG TLVL +T + R+ L Sbjct: 70 RRYWSAQGTDQALLARFWPG-TTLVLP--ATPQVPFWIRGRHAGVAVRISSHPAIVALSR 126 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 +G + SAN +G+ +++ + ++ + S IV+ + + + Sbjct: 127 VFGGAMVSTSANPAGKQPARDLRTLYR--YFGRSLWVLPARLGGQHHPSRIVDARSGRVL 184 Query: 190 RI 191 R Sbjct: 185 RE 186 >gi|269124173|ref|YP_003306750.1| Sua5/YciO/YrdC/YwlC family protein [Streptobacillus moniliformis DSM 12112] gi|268315499|gb|ACZ01873.1| Sua5/YciO/YrdC/YwlC family protein [Streptobacillus moniliformis DSM 12112] Length = 183 Score = 126 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 53/182 (29%), Positives = 84/182 (46%), Gaps = 12/182 (6%) Query: 24 PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHL 83 I PT+TVYGL N A+ ++++IKKR +I VS + K ++ L + Sbjct: 5 VILFPTDTVYGLGSLP-NKKALDKIFDIKKRDRNKKIIALVSKKETINKIIEINDLIDKI 63 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142 F+PGP+TL+ ST I L + R+P ++IE +G L SAN Sbjct: 64 IDKFFPGPITLI--AKSTPFIKELL--GYEDIGVRIPNNKMALEIIEKFGGILMTTSANI 119 Query: 143 SGQISITNVKHILSSSICKEIP--LIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200 SG+ + + I K + I D +S G+ S+I + E + +LR G + + Sbjct: 120 SGKEAPKKYSE-IDEEILKLVDHKYIDDSNLS--GISSSIFKIDGEN-ITLLREGNISLI 175 Query: 201 TL 202 L Sbjct: 176 EL 177 >gi|258544687|ref|ZP_05704921.1| Sua5/YciO/YrdC/YwlC family protein [Cardiobacterium hominis ATCC 15826] gi|258520105|gb|EEV88964.1| Sua5/YciO/YrdC/YwlC family protein [Cardiobacterium hominis ATCC 15826] Length = 204 Score = 126 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 41/203 (20%), Positives = 85/203 (41%), Gaps = 10/203 (4%) Query: 2 QIMSITD----SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 +I+ I + + E L G + P+++ Y L + +A ++ I++ Sbjct: 3 EILEIHPARIKPRDIARIVETLRHGGVVIAPSDSGYALLCQLDDKSAAEKIRHIRELERD 62 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 +P +D++ + ++A VD + L K +PG T +L + KT Sbjct: 63 HPFTILCADLTDLARYARVDNVQFRLLKTLFPGAYTCILPASREVP-RRVQNDKRKTIGI 121 Query: 118 RVPCGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 RVP + ++ +G L S S H L +++ ++ L++D G + Sbjct: 122 RVPDHPVLQAILAEHGEALMGVSLFDSDAYDA--DIHELPAAVTGQVALMVDAGDVPL-R 178 Query: 177 ESTIVNVQCEKKVRILRPGGLEI 199 +T++++ E +LR G E+ Sbjct: 179 PTTVLDLT-EMPPLLLRQGAGEV 200 >gi|240948328|ref|ZP_04752714.1| SUA5 protein, possible translation factor [Actinobacillus minor NM305] gi|240297367|gb|EER47908.1| SUA5 protein, possible translation factor [Actinobacillus minor NM305] Length = 184 Score = 126 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 68/186 (36%), Gaps = 8/186 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 N L + + +A PTE V+GL + + A++ L ++KKRP LI D+ + Sbjct: 2 NNLEQILAKIKQNQVVAYPTEAVFGLGCNPNSEQAVKLLLDLKKRPEEKGLILIAHDVEL 61 Query: 70 VKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTK 125 ++ + LS +T ++ + T++ T + R+ Sbjct: 62 LRPYIDESQLSETEWQRLNTLQEQAITWIMP--AKTNVPRYLTGKFNSIAVRICHTPAVV 119 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 L E L SAN SG + + + +++ S I ++ Sbjct: 120 ALCEKLQSALTSTSANLSGLTPCRTYHEVYAQF--GQYFPVLEATTDGKTNPSEIRDIFT 177 Query: 186 EKKVRI 191 +K R Sbjct: 178 QKVFRA 183 >gi|148238861|ref|YP_001224248.1| translation factor [Synechococcus sp. WH 7803] gi|147847400|emb|CAK22951.1| Possible translation factor [Synechococcus sp. WH 7803] Length = 199 Score = 126 bits (317), Expect = 5e-27, Method: Composition-based stats. Identities = 50/192 (26%), Positives = 85/192 (44%), Gaps = 10/192 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 A+ + ++L G +PT+T+ LA + +++ +K+RP PLI ++ + Sbjct: 10 AVDQIADYLRGGGAALLPTDTLPALACTPSSA---AQIWTLKQRPQDKPLILMAAEAVEL 66 Query: 71 KKHASVDPL--SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + +L LA+ +WPGPLTLVL H + R+P C T+ L Sbjct: 67 LDLTTHIAKLDALPLAERYWPGPLTLVLPAAGALVNH--LNPGQDSLGMRIPACAATRSL 124 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PLA SANRSG + + +++ L GL ST++ Sbjct: 125 LARSG-PLATTSANRSGAPPSCSAEQA-AAAFSGLPLLGPLPWPQPSGLASTVLKWTSPG 182 Query: 188 KVRILRPGGLEI 199 ++LR G + + Sbjct: 183 CWQMLRQGAVMV 194 >gi|254526812|ref|ZP_05138864.1| possible translation factor [Prochlorococcus marinus str. MIT 9202] gi|221538236|gb|EEE40689.1| possible translation factor [Prochlorococcus marinus str. MIT 9202] Length = 193 Score = 126 bits (317), Expect = 5e-27, Method: Composition-based stats. Identities = 51/192 (26%), Positives = 83/192 (43%), Gaps = 8/192 (4%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 + A + L++GLPI PT+T+ + P +YE KKR PLI S+ + Sbjct: 7 KSALKTLESGLPIIFPTDTLPAIGCL---PEFSNIIYEFKKRDKDKPLILMGSEHKQLID 63 Query: 73 HASVDPL--SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130 + + ++A +WPG LT+V+ + T+N T R+P + + + Sbjct: 64 YVNESAKKDYENIASKYWPGALTMVIPASERHT--TIITSNDLTLGLRIPNSYMAQSLIR 121 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 PL SAN SG V+ I +I I G G STI+ + R Sbjct: 122 ETGPLLTSSANLSGFKGSITVEGISQDFPSVKILGPIPWGK-ISGKASTIIFWKKSGDWR 180 Query: 191 ILRPGGLEIETL 202 ++R G + ++ L Sbjct: 181 LIREGEVLVKEL 192 >gi|91070575|gb|ABE11478.1| conserved hypothetical protein [uncultured Prochlorococcus marinus clone HOT0M-7C8] Length = 193 Score = 126 bits (317), Expect = 5e-27, Method: Composition-based stats. Identities = 51/192 (26%), Positives = 79/192 (41%), Gaps = 8/192 (4%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 + A + L AGLPI PT+T+ + P + +YE KKR PLI S + Sbjct: 7 KSALKTLRAGLPIIFPTDTLPAIGCL---PKFSKIIYEFKKRDRNKPLILMGSKYKQLID 63 Query: 73 HASVD--PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130 +A +WPG LT+V+ ++ + L T+ T R+P + + Sbjct: 64 FVHESAKEDFEKIASKYWPGALTMVIP--ASEHQNALLTSKDHTLGLRIPHSSIAQSLIQ 121 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 PL SAN SG + I I I S G STI++ + R Sbjct: 122 ETGPLLTSSANISGFTGSITAEGIALDFPSVAILGPIPWEKS-SGKASTIISWKKIGDWR 180 Query: 191 ILRPGGLEIETL 202 ++R G + ++ L Sbjct: 181 LIREGEVLVQEL 192 >gi|165976566|ref|YP_001652159.1| hypothetical protein APJL_1159 [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|303250111|ref|ZP_07336313.1| hypothetical protein APP6_1523 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303253285|ref|ZP_07339434.1| hypothetical protein APP2_0592 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307248163|ref|ZP_07530191.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|212277663|sp|B0BQ80|RIMN_ACTPJ RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|212277727|sp|B3GY27|RIMN_ACTP7 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|165876667|gb|ABY69715.1| hypothetical protein APJL_1159 [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|302647967|gb|EFL78174.1| hypothetical protein APP2_0592 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302651174|gb|EFL81328.1| hypothetical protein APP6_1523 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306855340|gb|EFM87515.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 184 Score = 126 bits (317), Expect = 5e-27, Method: Composition-based stats. Identities = 42/187 (22%), Positives = 71/187 (37%), Gaps = 12/187 (6%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 N L E L +A PTE V+GL + N +A+R L ++KKRP LI + Sbjct: 2 NNLENIVEQLKRNRVVAYPTEAVFGLGCNPNNESAVRALLKLKKRPEEKGLILIAPTKEL 61 Query: 70 VKKHASVDPLSLHLAKLF-WP--GPLTLVLDLLSTTDIHPLSTANLKTACFR---VPCGF 123 + + + L+ ++F P +T V+ + + T T R +P Sbjct: 62 LLPYIDENKLTAAHWQIFETPSERAITWVMP--AKKAVPQYLTGQFDTIAVRLCCIPA-- 117 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 L E G L S N +GQ + + P +++ + S I ++ Sbjct: 118 VIDLCERTGFALTSTSCNLTGQEPCRTADEV-KLQFGADFP-VLEAETAGKTNPSEIRDI 175 Query: 184 QCEKKVR 190 + R Sbjct: 176 FTQHIFR 182 >gi|331667652|ref|ZP_08368516.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli TA271] gi|331065237|gb|EGI37132.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli TA271] Length = 157 Score = 126 bits (317), Expect = 5e-27, Method: Composition-based stats. Identities = 35/152 (23%), Positives = 63/152 (41%), Gaps = 4/152 (2%) Query: 45 IRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI 104 + R+ I++ P + D+S + ++ VD ++ L K PG T +L Sbjct: 1 MERICRIRQLPDGHNFTLMCRDLSELSTYSFVDNVAFRLMKNNTPGNYTFILKGTKEVP- 59 Query: 105 HPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEI 163 L KT RVP + L+E G P+ S G + + + K++ Sbjct: 60 RRLLQEKRKTIGMRVPSNPIAQALLEALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQV 119 Query: 164 PLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 LII GG +T++++ + V ++R G Sbjct: 120 DLIIHGGYLGQ-KPTTVIDLTDDTPV-VVREG 149 >gi|218437988|ref|YP_002376317.1| SUA5/yciO/yrdC domain protein [Cyanothece sp. PCC 7424] gi|218170716|gb|ACK69449.1| SUA5/yciO/yrdC domain protein [Cyanothece sp. PCC 7424] Length = 195 Score = 126 bits (317), Expect = 6e-27, Method: Composition-based stats. Identities = 51/206 (24%), Positives = 81/206 (39%), Gaps = 15/206 (7%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I+S T + A E G ++ PT+TV LA ++ KKR PL Sbjct: 1 MPIVSRT--ELITGAIE----GKVVSFPTDTVPALAALPPLSD---LIFLAKKRSQDKPL 51 Query: 61 ICHVSDISMVKKHA----SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 I + + + + + +A+ + PG LTLVL T + T Sbjct: 52 ILMGASVKDLWPYVMGTCEQLEIWQQIAQEYLPGALTLVLPASGLVPRSMNPT-DPTTIG 110 Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 RVP ++I PLA SAN SG+ ++ ++ I + + GL Sbjct: 111 IRVPQHQIAQMILAKTGPLATTSANLSGEPALLSMSAIAQTFPDVLTLNDEEKFQPASGL 170 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETL 202 ST+V + +LR G + + L Sbjct: 171 PSTVVKWTSQG-WEVLRQGQITLTNL 195 >gi|307257194|ref|ZP_07538966.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864356|gb|EFM96267.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 184 Score = 126 bits (317), Expect = 6e-27, Method: Composition-based stats. Identities = 40/187 (21%), Positives = 69/187 (36%), Gaps = 12/187 (6%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 N L E L +A PTE V+GL + N +A+R L ++KKRP LI + Sbjct: 2 NNLENIVEQLKRNRVVAYPTEAVFGLGCNPNNESAVRALLKLKKRPEEKGLILIAPTKEL 61 Query: 70 VKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR---VPCGF 123 + + + L+ + + +T V+ + + T T R +P Sbjct: 62 LLPYIDENKLTSAHWQIFETPSERAITWVMP--AKKAVPQYLTGQFDTIAVRLCCIPA-- 117 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 L E G L S N +GQ + + P +++ + S I ++ Sbjct: 118 VIDLCERTGFALTSTSCNLTGQEPCRTADEV-KLQFGADFP-VLEAETAGKTNPSEIRDI 175 Query: 184 QCEKKVR 190 + R Sbjct: 176 FTQHIFR 182 >gi|307261622|ref|ZP_07543290.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306868745|gb|EFN00554.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 187 Score = 126 bits (317), Expect = 6e-27, Method: Composition-based stats. Identities = 42/187 (22%), Positives = 71/187 (37%), Gaps = 12/187 (6%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 N L E L +A PTE V+GL + N +A+R L ++KKRP LI + Sbjct: 5 NNLENIVEQLKRNRVVAYPTEAVFGLGCNPNNESAVRALLKLKKRPEEKGLILIAPTKEL 64 Query: 70 VKKHASVDPLSLHLAKLF-WP--GPLTLVLDLLSTTDIHPLSTANLKTACF---RVPCGF 123 + + + L+ ++F P +T V+ + + T T R+P Sbjct: 65 LLPYIDENKLTAAHWQIFETPSERAITWVMP--AKKAVPQYLTGQFDTIAVRLCRIPA-- 120 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 L E G L S N +GQ + + P +++ + S I ++ Sbjct: 121 VIDLCERTGFALTSTSCNLTGQEPCRTADEV-KLQFGADFP-VLEAETAGKTNPSEIRDI 178 Query: 184 QCEKKVR 190 + R Sbjct: 179 FTQHIFR 185 >gi|33151637|ref|NP_872990.1| hypothetical protein HD0414 [Haemophilus ducreyi 35000HP] gi|81423817|sp|Q7VNS3|RIMN_HAEDU RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|33147858|gb|AAP95379.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP] Length = 184 Score = 125 bits (316), Expect = 6e-27, Method: Composition-based stats. Identities = 41/187 (21%), Positives = 67/187 (35%), Gaps = 12/187 (6%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 N L E L +A PTE+V+GL + N AIR+L ++K RP LI + Sbjct: 2 NNLLAVIELLKQNQVVAYPTESVFGLGCNPNNEEAIRQLLQLKNRPIEKGLILVAPTKEL 61 Query: 70 VKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF---RVPCGF 123 + + L+ +T ++ + ++ T T RVP Sbjct: 62 LLPYIDESQLTEKHWQRFDTITEQAVTWIMPVHK--NVSHYLTGKFNTIAVRLCRVPA-- 117 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 KL E+ G L SAN +G + P +++ S I ++ Sbjct: 118 VVKLCESLGFALTSTSANFTGLPPCRTALEV-KQQFGDHFP-VLEAETGNRMNPSEIRDI 175 Query: 184 QCEKKVR 190 + R Sbjct: 176 FTQHIFR 182 >gi|15618190|ref|NP_224475.1| SuA5 superfamily-related protein [Chlamydophila pneumoniae CWL029] gi|15835805|ref|NP_300329.1| SuA5 superfamily-related protein [Chlamydophila pneumoniae J138] gi|16752768|ref|NP_445036.1| Sua5/YciO/YrdC family protein [Chlamydophila pneumoniae AR39] gi|4376543|gb|AAD18419.1| SuA5 Superfamily-related Protein [Chlamydophila pneumoniae CWL029] gi|7189407|gb|AAF38319.1| Sua5/YciO/YrdC family protein [Chlamydophila pneumoniae AR39] gi|8978644|dbj|BAA98480.1| SuA5 superfamily-related protein [Chlamydophila pneumoniae J138] Length = 286 Score = 125 bits (316), Expect = 7e-27, Method: Composition-based stats. Identities = 52/204 (25%), Positives = 85/204 (41%), Gaps = 17/204 (8%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 +L + + G +A+PT+TVYG + A RLY +K R +V+ I + Sbjct: 11 SLPEVMSAIHQGKIVALPTDTVYGFVLSLYASEAEERLYALKDREPSKAFALYVNSIEDI 70 Query: 71 KKHA--SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + + P + LA+LF PG +TLV+ H +T FR+ +++ Sbjct: 71 ENISGYPLSPTAKKLAQLF-PGAITLVVK-------HRNPRFPKETLAFRIVDHSVVREI 122 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 ++ G L SAN S S + I + L I G GLEST+V Sbjct: 123 VDHCGT-LIGTSANLSEFPSALTAQEIFADFADH--DLCIFDGPCSHGLESTVV---ASD 176 Query: 188 KVRILRPGGLEIETLKRAISVELE 211 + I R G + ++ E + Sbjct: 177 PLYIYREGLISRSVIENIAGTEAK 200 >gi|172039116|ref|YP_001805617.1| putative YrdC-like RNA-binding protein [Cyanothece sp. ATCC 51142] gi|171700570|gb|ACB53551.1| putative YrdC-like RNA-binding protein [Cyanothece sp. ATCC 51142] Length = 199 Score = 125 bits (315), Expect = 8e-27, Method: Composition-based stats. Identities = 48/190 (25%), Positives = 75/190 (39%), Gaps = 12/190 (6%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 + G I+ PT+TV LA P + ++ K+RP PLI S + K+ P Sbjct: 13 VKQGKVISFPTDTVPALAAL---PESASLIFATKQRPPDKPLILMGSSSDAIWKYVKGTP 69 Query: 79 LSLHL----AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHP 134 + K +WPG LTLVL ++ T R+P + I Sbjct: 70 QEFEIWEKVVKQYWPGQLTLVLPASEWVPKA-MNPLEPTTIGVRIPNSIIAQNILKQTGC 128 Query: 135 LAIPSANRSGQISITNVKHI---LSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 LA SAN SG+ I + I + ++ + GL ST+ + +I Sbjct: 129 LATTSANLSGEPPIETLSEIAANFPDVLVLNEEVLKNQKKYGSGLPSTVAKWT-DTDWKI 187 Query: 192 LRPGGLEIET 201 LR G +++ Sbjct: 188 LRQGSIKLTE 197 >gi|149923373|ref|ZP_01911780.1| Sua5/YciO/YrdC/YwlC family protein [Plesiocystis pacifica SIR-1] gi|149815787|gb|EDM75311.1| Sua5/YciO/YrdC/YwlC family protein [Plesiocystis pacifica SIR-1] Length = 212 Score = 125 bits (315), Expect = 8e-27, Method: Composition-based stats. Identities = 48/195 (24%), Positives = 75/195 (38%), Gaps = 6/195 (3%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM--NPLICHVS 65 D L A E L G I PT+T Y + I L ++K A PL V Sbjct: 18 DPRKLSPAVEALQRGAVIIYPTDTGYAFGCALSSNKGISTLRKLKGIHAKHAKPLTMLVE 77 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125 ++ + ++ + + + + PGP T+VL +T+D+ R+P Sbjct: 78 TLNDMGRYGVMPNTAFRVVRRLLPGPYTMVL--RATSDVPRAMKNRTGEVGMRLPDHKVC 135 Query: 126 KLI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 L+ E G PL S L + ++I L+IDGG ST++ Sbjct: 136 NLLVEHLGEPLLTGSLTPGEDSPELEDPAELEARYNRDIGLMIDGGHIWP-EPSTVLRFD 194 Query: 185 CEKKVRILRPGGLEI 199 + +LR G EI Sbjct: 195 ERGDIEVLREGQGEI 209 >gi|119509584|ref|ZP_01628731.1| SUA5/yciO/yrdC-like protein [Nodularia spumigena CCY9414] gi|119465773|gb|EAW46663.1| SUA5/yciO/yrdC-like protein [Nodularia spumigena CCY9414] Length = 200 Score = 125 bits (315), Expect = 9e-27, Method: Composition-based stats. Identities = 51/203 (25%), Positives = 79/203 (38%), Gaps = 12/203 (5%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 ++ +T + + AGL ++ PT+TV LA A ++ K+R PLI Sbjct: 2 VLQMTHVSLVDLIAGA-RAGLLVSFPTDTVPALAALP--EKA-GLIFAAKQRSQDKPLIL 57 Query: 63 HVSDISMVKKHASVDP----LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 + + + + +A WPG LTLVL T + T R Sbjct: 58 MGASAEDLWPYVQGSENELKIWQDVANRHWPGALTLVLPASQKVPKQMNPT-DPSTIGIR 116 Query: 119 VPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSS--SICKEIPLIIDGGISKIGL 176 VP + I LA SAN SGQ + + I + P +G S IG+ Sbjct: 117 VPQSAIAQTILAQTGALATTSANFSGQQPLLKLAEIAEQFPEVLTLEPTQFNGEFSGIGV 176 Query: 177 ESTIVNVQCEKKVRILRPGGLEI 199 ST+ + ILR G +++ Sbjct: 177 PSTVSKWTG-RNWEILRQGTVKL 198 >gi|123967880|ref|YP_001008738.1| putative translation factor (SUA5) [Prochlorococcus marinus str. AS9601] gi|123197990|gb|ABM69631.1| Putative translation factor (SUA5) [Prochlorococcus marinus str. AS9601] Length = 193 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 51/192 (26%), Positives = 80/192 (41%), Gaps = 8/192 (4%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 + A + L +GLPI PT+T+ + P +YE KKR PLI S+ + Sbjct: 7 KSALKTLKSGLPIIFPTDTLPAIGCL---PKFSNIIYEFKKRDRGKPLILMGSEHKQLID 63 Query: 73 HASVD--PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130 + ++A +WPG LT+V+ + T+N T R+P + K + Sbjct: 64 YVHESAKEDYENIASKYWPGALTMVVPASEKQT--TILTSNDLTLGLRIPNSYMAKSLMR 121 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 PL SAN SG V+ I +I I + G STI+ + R Sbjct: 122 ETGPLLTSSANISGFKGSITVEGIALDFPSVKILGPI-PWEKRSGKASTIIFWKKSGDWR 180 Query: 191 ILRPGGLEIETL 202 ++R G + + L Sbjct: 181 LIREGEVLVREL 192 >gi|328954788|ref|YP_004372121.1| SUA5/yciO/yrdC domain protein [Coriobacterium glomerans PW2] gi|328455112|gb|AEB06306.1| SUA5/yciO/yrdC domain protein [Coriobacterium glomerans PW2] Length = 233 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 57/222 (25%), Positives = 92/222 (41%), Gaps = 17/222 (7%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSR---NPTAI--------RRLYEIKKRPAMNP 59 A+ L AG IPTETVYG+AV P A+ RR++ +K+R + Sbjct: 16 AVEAGSAVLTAGGVALIPTETVYGIAVAISAFARPGAMLPDPGSGYRRIFSLKRRDLVQT 75 Query: 60 LICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 L VS + + + +D + LA+ FWPG LTLV+D + + A T R Sbjct: 76 LPLLVSGPADLDRFGLDIDSQTRCLAERFWPGALTLVVD--AAERVPAFMRAADGTIALR 133 Query: 119 VPCGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 LI+ G PLA SAN + + + + + + ID G + Sbjct: 134 ASSSPAVGDLIDACGCPLAATSANTHAMPAPASFAEVEPRILDG-VDVAIDAGPTPCADA 192 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETST 219 ST++ + + +LR G L ++ A+ + + Sbjct: 193 STVIRI-SDGAPMVLREGALPSRAIEDALGSRHVHLRSPKES 233 >gi|239906926|ref|YP_002953667.1| hypothetical protein DMR_22900 [Desulfovibrio magneticus RS-1] gi|239796792|dbj|BAH75781.1| hypothetical protein [Desulfovibrio magneticus RS-1] Length = 214 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 50/193 (25%), Positives = 74/193 (38%), Gaps = 12/193 (6%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS- 80 G + PTET + L + N A+ R+ +K RPA PL V +++ + + Sbjct: 16 GGCVVYPTETYFALGALADNAAALERIVAVKGRPAHKPLPLLVGELAQLAAVVPPGFAAG 75 Query: 81 ------LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLIETYGH 133 LA LFWPGPL+LV+ + L R P L G Sbjct: 76 PLGADFGELAALFWPGPLSLVVPCREA--LPGLVKDADGRVSVRFTPHETAAALCRLAGG 133 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLII-DGGISKIGLESTIVNVQCEKKVRIL 192 L SAN SG L + + ++ G G ST+ ++ K++ I Sbjct: 134 ALVATSANVSGGPPAAT-PEALDPEVTAAVDAVLTAGAPPAGGPASTVAGLRGGKRLTIF 192 Query: 193 RPGGLEIETLKRA 205 R G + LK A Sbjct: 193 RRGATPLSALKAA 205 >gi|223042141|ref|ZP_03612312.1| hypothetical protein AM202_0726 [Actinobacillus minor 202] gi|223017080|gb|EEF15521.1| hypothetical protein AM202_0726 [Actinobacillus minor 202] Length = 184 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 70/186 (37%), Gaps = 8/186 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 N L + + +A PTE V+GL + + A++ L ++KKRP LI ++ + Sbjct: 2 NNLEQILAKIKQNQVVAYPTEAVFGLGCNPNSEQAVKLLLDLKKRPEEKGLILIAHNLEL 61 Query: 70 VKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGFTK 125 ++ + LS +T ++ + T++ T + R+ Sbjct: 62 LRPYIDESQLSETEWQRLNTLQEQAITWIMP--AKTNVPRYLTGKFNSIAVRICRTPAVV 119 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 L E L SAN SG + + ++ P +++ S I ++ Sbjct: 120 ALCENLQSALTSTSANLSGLTPCRTYHEVY-AQFGQDFP-VLEATTDGKTNPSEIRDIFT 177 Query: 186 EKKVRI 191 +K R Sbjct: 178 QKVFRA 183 >gi|167855860|ref|ZP_02478611.1| hypothetical protein HPS_11182 [Haemophilus parasuis 29755] gi|167853010|gb|EDS24273.1| hypothetical protein HPS_11182 [Haemophilus parasuis 29755] Length = 184 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 63/184 (34%), Gaps = 8/184 (4%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 + + + L IA PTE V+GL + ++ A+R L ++K RP LI + ++ Sbjct: 3 SFNQLIDKLKQNQVIAYPTEAVFGLGCNPQSEQAVRSLLQLKNRPEEKGLILIAHNKKLL 62 Query: 71 KKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKK 126 + L+ + +T ++ +T + T R + Sbjct: 63 LPYIDDTHLTEVEWQRFETLGEQAITWIMPAKAT--VPRYLKGQFDTIAVRLCQVPAVVE 120 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L G L SAN + + K P ++D S I ++ + Sbjct: 121 LCTATGFALTSTSANLTTLPPCLTADEV-RQQFGKSFP-VLDQATGGKSNPSEIRDIFSQ 178 Query: 187 KKVR 190 R Sbjct: 179 HIFR 182 >gi|262374665|ref|ZP_06067938.1| conserved hypothetical protein [Acinetobacter junii SH205] gi|262310455|gb|EEY91546.1| conserved hypothetical protein [Acinetobacter junii SH205] Length = 189 Score = 124 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 40/191 (20%), Positives = 69/191 (36%), Gaps = 12/191 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +N++ +A + L G +A PTE V+GL D N A + + E+K RP +I + Sbjct: 3 TNSIAEAADCLKQGQVLAYPTEAVWGLGCDPFNQQAFQDILELKHRPVEKGVILLAGHLE 62 Query: 69 MVKKHASVDPLSLH-LAKLFW------PGPLTLVLDLLSTTDIHPLSTANLKTACFRV-P 120 V+ SL W T +L + I RV Sbjct: 63 QVEHLLQNLESSLRNQVIASWSNRQETERATTWLLP--ADQHIPTWIKGQHSLVAVRVTT 120 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 +L + +G + SAN +G +++ + +DG + S I Sbjct: 121 HPLCVELCDLFGGFIVSTSANPAGLTPAKSLEEA--QAYFGSSLHYLDGKLGLSQEPSRI 178 Query: 181 VNVQCEKKVRI 191 +N + +R Sbjct: 179 LNALTGEVIRA 189 >gi|118497072|ref|YP_898122.1| Sua5/YciO/YrdC family protein [Francisella tularensis subsp. novicida U112] gi|134301787|ref|YP_001121755.1| Sua5/YciO/YrdC/YwlC family protein [Francisella tularensis subsp. tularensis WY96-3418] gi|187931331|ref|YP_001891315.1| Sua5/YciO/YrdC family protein [Francisella tularensis subsp. mediasiatica FSC147] gi|194324308|ref|ZP_03058082.1| Sua5/YciO/YrdC/YwlC family protein [Francisella tularensis subsp. novicida FTE] gi|118422978|gb|ABK89368.1| Sua5/YciO/YrdC family protein [Francisella novicida U112] gi|134049564|gb|ABO46635.1| Sua5/YciO/YrdC/YwlC family protein [Francisella tularensis subsp. tularensis WY96-3418] gi|187712240|gb|ACD30537.1| Sua5/YciO/YrdC family protein [Francisella tularensis subsp. mediasiatica FSC147] gi|194321755|gb|EDX19239.1| Sua5/YciO/YrdC/YwlC family protein [Francisella tularensis subsp. novicida FTE] Length = 204 Score = 124 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 4/195 (2%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 + + L++ LD IAIPT++ Y LA ++ I ++ +I+ + + D Sbjct: 12 NNLSELKELANILDNDGVIAIPTDSGYALACRMKSKKGIDKIIKIRNLDSSHNFTLCCKD 71 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126 +S + ++A VD + L K + PGP T +L+ L T + T RV + + Sbjct: 72 LSEISEYAKVDNNAYRLLKRYTPGPYTFILNATKKVS-SLLVTKSKNTVGIRVSEHYVPR 130 Query: 127 LIET-YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 I G PL I S G + + S I + +++ +T+V + Sbjct: 131 AISAEIGEPLVISSFIVPGHQHVVTDCDEVDSQIMNYLDAVVESDYCGYD-PTTVVELL- 188 Query: 186 EKKVRILRPGGLEIE 200 E +ILR G EI+ Sbjct: 189 ELPYQILRQGAGEID 203 >gi|326201500|ref|ZP_08191371.1| SUA5/yciO/yrdC domain [Clostridium papyrosolvens DSM 2782] gi|325988100|gb|EGD48925.1| SUA5/yciO/yrdC domain [Clostridium papyrosolvens DSM 2782] Length = 214 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 86/198 (43%), Gaps = 5/198 (2%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 + A E + G I +PT+ VY + D+ N A+ RL EI+K P PL + D + K Sbjct: 13 KLAGEAIKRGKVIVVPTDAVYAVVCDAFNKEAVERLREIRKSPQDKPLSLII-DKKDIDK 71 Query: 73 HASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETY 131 + + + + PG ++ +++ DI + N C TK + E Sbjct: 72 YCHIKNETYKSIIDALLPGKVSFLIN--KKGDIFTDAVPNSDAICVFWQDNETKDVYEES 129 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 G LAI SAN++G T ++ +S E+ L ID G + +T ++++ + + Sbjct: 130 GTVLAISSANKAGFPEATTLEQAIS-FFEDEVELFIDSGEERGNKGTTQLDIRNDSISIM 188 Query: 192 LRPGGLEIETLKRAISVE 209 + + + + + Sbjct: 189 RESPMFPLVEINKVLDAK 206 >gi|262198093|ref|YP_003269302.1| Sua5/YciO/YrdC/YwlC family protein [Haliangium ochraceum DSM 14365] gi|262081440|gb|ACY17409.1| Sua5/YciO/YrdC/YwlC family protein [Haliangium ochraceum DSM 14365] Length = 205 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 56/199 (28%), Positives = 93/199 (46%), Gaps = 15/199 (7%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + +A + L G + +PTET YGLAVD NP A+R L ++K+RPA P + + Sbjct: 5 ERDVDRAVDILRTGGIVCMPTETTYGLAVDIDNPAALRALAQLKQRPADAPFGLVLGERG 64 Query: 69 MVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCGFT 124 + + A PL+ +A+ WPG LTLV+ I P ++ + RVP Sbjct: 65 HIHQLTALWPPLAEDMARACWPGALTLVVPARPELPGELIGPGGGVGVRLSSHRVPTALA 124 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 L G + SAN SG + ++ + + +DGG + ST+V ++ Sbjct: 125 AAL----GRAITATSANPSGAPAACDIARA--RAYFGDAVHYLDGGPATPA-ASTVVAIE 177 Query: 185 CEK----KVRILRPGGLEI 199 + + R+LR G +++ Sbjct: 178 DQGDGQARARLLRAGPVDV 196 >gi|219871360|ref|YP_002475735.1| SUA5 protein, putative translation factor [Haemophilus parasuis SH0165] gi|219691564|gb|ACL32787.1| SUA5 protein, possible translation factor [Haemophilus parasuis SH0165] Length = 184 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 62/184 (33%), Gaps = 8/184 (4%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 + + E L IA PTE V+GL + ++ A+R L ++K RP LI ++ Sbjct: 3 SFNQLIEKLKQNQVIAYPTEAVFGLGCNPQSEQAVRSLLQLKNRPEDKGLILIAHHKELL 62 Query: 71 KKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKK 126 + L+ + +T ++ +T + +T R + Sbjct: 63 LPYIDDTHLTEVEWQRFETLGEQAITWIMPAKAT--VPRYLKGQFETIAVRLCQVPAVVE 120 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L G L SAN + + P ++D S I ++ + Sbjct: 121 LCTATGFALTSTSANLTTLPPCRTADEV-RQQFGNSFP-VLDQATGGKSNPSEIRDIFSQ 178 Query: 187 KKVR 190 R Sbjct: 179 HIFR 182 >gi|170077858|ref|YP_001734496.1| YrdC domain-containing protein [Synechococcus sp. PCC 7002] gi|169885527|gb|ACA99240.1| yrdC domain protein [Synechococcus sp. PCC 7002] Length = 197 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 54/203 (26%), Positives = 82/203 (40%), Gaps = 20/203 (9%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 +T + + +A + G ++ PT+TV LA P A +Y++K+R PLI + Sbjct: 4 VTAAALVDRA----NNGQVVSFPTDTVPALAAQ---PDAAPLIYQLKRRSPDKPLILMTA 56 Query: 66 DISMVKKHASVDPLS----LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 + + + +A+ +WPG LTLVL T N T RVP Sbjct: 57 SLPEIWDYVVGSETEKAQWQAIAQQYWPGALTLVLPASEKVSAAMNPT-NSGTIGVRVPD 115 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI-----GL 176 + I PLA SANRSG + + I EIP++ + G Sbjct: 116 LALAQGILRETGPLATTSANRSGSDPLEWMAAIAKEF--PEIPVLDCTTQERTSKIGSGQ 173 Query: 177 ESTIVNVQCEKKVRILRPGGLEI 199 ST+ RILR G + + Sbjct: 174 PSTVAQWTGSG-WRILRQGAVSL 195 >gi|56708352|ref|YP_170248.1| Sua5_yciO_yrdC family protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110670822|ref|YP_667379.1| Sua5_yciO_yrdC family protein [Francisella tularensis subsp. tularensis FSC198] gi|224457478|ref|ZP_03665951.1| Sua5_yciO_yrdC family protein [Francisella tularensis subsp. tularensis MA00-2987] gi|254370974|ref|ZP_04986977.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254875175|ref|ZP_05247885.1| sua5/yciO/yrdC family protein [Francisella tularensis subsp. tularensis MA00-2987] gi|56604844|emb|CAG45926.1| Sua5_yciO_yrdC family protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110321155|emb|CAL09309.1| Sua5_yciO_yrdC family protein [Francisella tularensis subsp. tularensis FSC198] gi|151569215|gb|EDN34869.1| hypothetical protein FTBG_01595 [Francisella tularensis subsp. tularensis FSC033] gi|254841174|gb|EET19610.1| sua5/yciO/yrdC family protein [Francisella tularensis subsp. tularensis MA00-2987] gi|282159967|gb|ADA79358.1| Sua5_yciO_yrdC family protein [Francisella tularensis subsp. tularensis NE061598] Length = 204 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 4/195 (2%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 + + L++ LD IAIPT++ Y LA ++ I ++ +I+ + + D Sbjct: 12 NNLSELKELANILDNDGVIAIPTDSGYALACRMKSKKGIDKIIKIRNLDSSHNFTLCCKD 71 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126 +S + ++A VD + L K + PGP T +L+ L T + T RV + + Sbjct: 72 LSEISEYAKVDNNAYRLLKRYTPGPYTFILNATKKVS-SLLVTKSKNTVGIRVSEHYVPR 130 Query: 127 LIET-YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 I G PL I S G + + S I + +++ +T+V + Sbjct: 131 AISAEIGEPLVISSFIVPGHQYVVTDCDEVDSQIMNYLDAVVESDYCGYD-PTTVVELL- 188 Query: 186 EKKVRILRPGGLEIE 200 E +ILR G EI+ Sbjct: 189 ELPYQILRQGAGEID 203 >gi|186683986|ref|YP_001867182.1| SUA5/yciO/yrdC domain-containing protein [Nostoc punctiforme PCC 73102] gi|186466438|gb|ACC82239.1| SUA5/yciO/yrdC, N-terminal domain protein [Nostoc punctiforme PCC 73102] Length = 225 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 47/187 (25%), Positives = 73/187 (39%), Gaps = 11/187 (5%) Query: 20 DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL 79 AGL ++ PT+TV LA A ++ K+R PLI + + + Sbjct: 37 RAGLLVSFPTDTVPALAAIP--EKA-GLIFAAKQRSQDKPLILMAASAEDLWLYVKGSEN 93 Query: 80 SLH----LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPL 135 L WPG LTLVL ++ + T RVP + I PL Sbjct: 94 EYKVWQELVGKHWPGGLTLVLPASERLPKV-MNPIDPTTIGIRVPNSAIARTILAQTGPL 152 Query: 136 AIPSANRSGQISITNVKHILSS--SICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 A SAN SGQ + + I + + G + +G+ ST+ +ILR Sbjct: 153 ATTSANFSGQPPLQTMAEIETQFPQVLTLATTECQGETAAMGIPSTVAKWTG-INWQILR 211 Query: 194 PGGLEIE 200 G ++++ Sbjct: 212 QGAIKLD 218 >gi|119715316|ref|YP_922281.1| translation factor SUA5 [Nocardioides sp. JS614] gi|119535977|gb|ABL80594.1| translation factor SUA5 [Nocardioides sp. JS614] Length = 208 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 74/198 (37%), Gaps = 4/198 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S L + + L IA PT++ Y L N R+ I++ + D + Sbjct: 14 SRLLDQIADALREDQLIAYPTDSGYALGCRLGNREGRDRILRIRRLDEKHHFTLMCKDFA 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKL 127 + +D + K PGP T +L L +T R+P + L Sbjct: 74 QLGHFVKLDNSAFRSIKAATPGPYTFILPATQEVP-RRLMHPKKRTVGVRIPAHVFDQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + T G L + G+ ++ + + ++ ++++ G + + +T+++ E Sbjct: 133 LGTLGEALLTSTLILPGETEPRSLGWEIKEELDHQVDVVVEAGET-LAEPTTVIDW-SEG 190 Query: 188 KVRILRPGGLEIETLKRA 205 +LR G + + A Sbjct: 191 YPEVLRVGAGDPARFEAA 208 >gi|254523713|ref|ZP_05135768.1| Sua5/YciO/YrdC family protein [Stenotrophomonas sp. SKA14] gi|219721304|gb|EED39829.1| Sua5/YciO/YrdC family protein [Stenotrophomonas sp. SKA14] Length = 169 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 36/171 (21%), Positives = 64/171 (37%), Gaps = 7/171 (4%) Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS---VDPLSL 81 IA PTE V+GL D + A+ + +K+RP +I +++ ++ + Sbjct: 2 IAYPTEAVWGLGCDPSHEAAVHMVLRLKQRPIEKGMILVAAELPQLEGWVRLQALPDARQ 61 Query: 82 HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140 WPG T +L P T R+ L +G PL SA Sbjct: 62 RAVLASWPGANTWILPAGPRAQ--PWVTGEHSGIAVRISAHPLVAALCRAWGGPLVSTSA 119 Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 N +G+ + + L + + + I+DG + + I + +R Sbjct: 120 NLAGEPPARS-REELDPRLLRLLDGILDGQTGGLAQPTPIRDALSGNVLRS 169 >gi|208780526|ref|ZP_03247866.1| Sua5/YciO/YrdC/YwlC family protein [Francisella novicida FTG] gi|254372431|ref|ZP_04987921.1| hypothetical protein FTCG_01656 [Francisella tularensis subsp. novicida GA99-3549] gi|151570159|gb|EDN35813.1| hypothetical protein FTCG_01656 [Francisella novicida GA99-3549] gi|208743672|gb|EDZ89976.1| Sua5/YciO/YrdC/YwlC family protein [Francisella novicida FTG] Length = 204 Score = 123 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 4/195 (2%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 + + L++ LD IAIPT++ Y LA ++ I ++ +I+ + + D Sbjct: 12 NNLSELKELANILDNDGVIAIPTDSGYALACRMKSKKGIDKIIKIRNLDSSHNFTLCCKD 71 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126 +S + ++A VD + L K + PGP T +L+ L T + T RV + + Sbjct: 72 LSEISEYAKVDNNAYRLLKRYTPGPYTFILNATKKVS-SLLVTKSKNTVGIRVSEHYVPR 130 Query: 127 LIET-YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 I G PL I S G + + S I + +++ +T+V + Sbjct: 131 AISAEIGEPLVISSFIVPGHQHVVTDCAEVDSQIMNYLDAVVESDYCGYD-PTTVVELL- 188 Query: 186 EKKVRILRPGGLEIE 200 E +ILR G EI+ Sbjct: 189 ELPYQILRQGAGEID 203 >gi|241667154|ref|ZP_04754732.1| SUA5/YciO/YrdC family protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254875707|ref|ZP_05248417.1| Sua5/YciO/YrdC/YwlC family protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254841728|gb|EET20142.1| Sua5/YciO/YrdC/YwlC family protein [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 204 Score = 123 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 50/191 (26%), Positives = 86/191 (45%), Gaps = 4/191 (2%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 L++ LD+ +A+PT++ Y LA ++ AI ++ +I++ + D+S + Sbjct: 16 ELKEIANILDSDGVLAVPTDSGYALACRMKSKKAIDKIIKIRELDGKHNFTLSCKDLSEI 75 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130 ++A VD + + K + PGP T +L+ L T + T RV + + I Sbjct: 76 SEYAKVDNSAYRILKRYTPGPFTFILNATKKVS-SLLVTKSKNTVGIRVSEHYALQAISA 134 Query: 131 -YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL I S GQ + ++ + I ++I+ G EST V E Sbjct: 135 EIGEPLVIGSFILPGQDHVVTDCSVIDDEVMNYIDVVIESDYC--GYESTTVVEMLELPY 192 Query: 190 RILRPGGLEIE 200 +ILR G EI+ Sbjct: 193 QILRQGAGEID 203 >gi|167626597|ref|YP_001677097.1| SUA5/YciO/YrdC family protein [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167596598|gb|ABZ86596.1| SUA5/YciO/YrdC family protein [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 204 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 50/191 (26%), Positives = 85/191 (44%), Gaps = 4/191 (2%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 L++ LD +A+PT++ Y LA ++ AI ++ +I++ + D+S + Sbjct: 16 ELKEIANVLDNDGVLAVPTDSGYALACRMKSKKAIDKIIKIRELDGKHNFTLSCKDLSEI 75 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130 ++A VD + + K + PGP T +L+ L T + T RV + + I Sbjct: 76 SEYAKVDNSAYRILKRYTPGPFTFILNATKKVS-SLLVTKSKNTVGIRVSEHYALQAISA 134 Query: 131 -YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL I S GQ + ++ + I ++I+ G EST V E Sbjct: 135 EIGEPLVIGSFILPGQDHVVTDCSVIDDEVMNYIDVVIESDYC--GYESTTVVEMLELPY 192 Query: 190 RILRPGGLEIE 200 +ILR G EI+ Sbjct: 193 QILRQGAGEID 203 >gi|88807794|ref|ZP_01123305.1| hypothetical protein WH7805_06526 [Synechococcus sp. WH 7805] gi|88787833|gb|EAR18989.1| hypothetical protein WH7805_06526 [Synechococcus sp. WH 7805] Length = 207 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 57/206 (27%), Positives = 89/206 (43%), Gaps = 14/206 (6%) Query: 1 MQIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56 Q M++T + A+ + L G +PT+T+ LA + +++ +K+RP Sbjct: 4 FQAMAMTPLDGQLMAVEEIAGHLCGGGAALLPTDTLPALACTPSSA---AQIWTLKQRPQ 60 Query: 57 MNPLICHVSDISMVKKHASVD--PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT 114 PLI +++S + +V + LA +WPGPLTLVL T H T Sbjct: 61 DKPLILMAAEVSALLDLTTVIAREDARPLADRYWPGPLTLVLPAEGTLTNH--LNPGQDT 118 Query: 115 ACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173 R+P C T+ L+ G PLA SANRSG + +++ L Sbjct: 119 LGMRIPACAVTRSLLARCG-PLATTSANRSGGT-PSCSAEQAAAAFPALPLLAPLPWPQP 176 Query: 174 IGLESTIVNVQCEKKVRILRPGGLEI 199 GL ST++ + LR G + I Sbjct: 177 SGLASTVLKWISPGCWQTLRQGAVMI 202 >gi|300871115|ref|YP_003785987.1| Sua5/YciO/YrdC/YwlC family protein [Brachyspira pilosicoli 95/1000] gi|300688815|gb|ADK31486.1| Sua5/YciO/YrdC/YwlC family protein [Brachyspira pilosicoli 95/1000] Length = 196 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 47/180 (26%), Positives = 80/180 (44%), Gaps = 5/180 (2%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 A+ + + ++ G + PT+TVYG+ D+ N AI R+Y IK+R PL+ + D + Sbjct: 16 AVEEVAKVINNGGVVISPTDTVYGMLADAFNVDAINRIYSIKEREREKPLLILLKDSKFI 75 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130 + + K PG LT ++ L L N T R+P + + Sbjct: 76 NILCEGN--IPDIVKAKIPGELTFIMPLKEIIKKDFLYLKN--TVALRIPKDDYMEKLLK 131 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 PL PSAN +G I + ++ ++ LI++ G + L ST+ + K +R Sbjct: 132 LTPPLVAPSANPTGYGVIYDGNKLV-ELYKDKVDLIVNCGTIEKKLPSTLYDCINNKVLR 190 >gi|297283021|ref|XP_002802371.1| PREDICTED: yrdC domain-containing protein, mitochondrial-like, partial [Macaca mulatta] Length = 268 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 57/197 (28%), Positives = 95/197 (48%), Gaps = 16/197 (8%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ALR A L AG +A+PT+T+YGLA + A+R +Y +K R PL + ++ Sbjct: 56 TEALRAAVAELRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVA 115 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 V ++ V + L K PGP+TLV++ + +++ R+P F + L Sbjct: 116 DVYRYCRVR-VPEGLLKDLLPGPVTLVMER--SEELNKDLNPFTPLVGIRIPDHAFMQDL 172 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLI--------IDGGISKIGLEST 179 + + PLA+ SAN S Q S NV+ + ++ L+ ++G ST Sbjct: 173 AQMFEGPLALTSANLSSQASSLNVEE--FRDLWPQLSLVIDGGQIGGGQSPECRLG--ST 228 Query: 180 IVNVQCEKKVRILRPGG 196 +V++ K I+RPG Sbjct: 229 VVDLSVPGKFGIIRPGC 245 >gi|332705341|ref|ZP_08425419.1| putative translation factor SUA5 [Lyngbya majuscula 3L] gi|332355701|gb|EGJ35163.1| putative translation factor SUA5 [Lyngbya majuscula 3L] Length = 201 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 50/188 (26%), Positives = 78/188 (41%), Gaps = 12/188 (6%) Query: 21 AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80 +G ++ PT+TV LAV + +E K+RP PLI + + Sbjct: 15 SGKLVSFPTDTVPALAVLPHKSELV---FEAKRRPQDKPLILMGASPKSLWPFVQGTSAQ 71 Query: 81 L----HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLA 136 H+A +WPG LTLVL ++ ++ T RVP I + PLA Sbjct: 72 RSIWEHMAVKYWPGALTLVLPASDKVPTV-MNPSDPTTIGVRVPASRIAIAILSKTGPLA 130 Query: 137 IPSANRSGQISITNVK--HILSSSICKEIPLIIDG-GISKIGLESTIVNVQCEKKVRILR 193 SAN SG+ + + + + P ++ KIG+ ST+ ILR Sbjct: 131 TTSANYSGEPPLQTMAAVEVQFPEVLTLQPAELEAIKPDKIGVPSTVAKWTSSG-WEILR 189 Query: 194 PGGLEIET 201 GG+E++ Sbjct: 190 AGGIELDD 197 >gi|282899092|ref|ZP_06307073.1| SUA5/yciO/yrdC-like protein [Cylindrospermopsis raciborskii CS-505] gi|281196008|gb|EFA70924.1| SUA5/yciO/yrdC-like protein [Cylindrospermopsis raciborskii CS-505] Length = 190 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 47/198 (23%), Positives = 74/198 (37%), Gaps = 15/198 (7%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 M+I+ +R A G I+ PT+TV G+A +Y K+R PLI Sbjct: 1 MNISLDRLIRGA----KEGKIISFPTDTVPGMATIPTKAE---LIYIAKQRSLDKPLILM 53 Query: 64 VSDISMVKKHASVDPLSLHL----AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 ++ + ++ + +WPG LTLVL + T RV Sbjct: 54 GAEPESLWEYVKGSDQEYEIWQEVVNRYWPGALTLVLPASDKVPRVMNPQ-DPTTIGIRV 112 Query: 120 PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 P + I P+A S N SG+ + I +I+ +G+ ST Sbjct: 113 PNHPIARAILAQTGPMATTSVNLSGKPPLETQAEIAGEFPDVLTEELIE--YKGLGVPST 170 Query: 180 IVNVQCEKKVRILRPGGL 197 + E +ILR G + Sbjct: 171 VAKWT-ENHWQILRQGSI 187 >gi|254421677|ref|ZP_05035395.1| hypothetical protein S7335_1827 [Synechococcus sp. PCC 7335] gi|196189166|gb|EDX84130.1| hypothetical protein S7335_1827 [Synechococcus sp. PCC 7335] Length = 241 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 51/199 (25%), Positives = 88/199 (44%), Gaps = 15/199 (7%) Query: 11 ALRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +L + + L ++ PT+TV LA ++ K+RP PLI + + Sbjct: 48 SLDQMIQALKTRPALVSFPTDTVPALAAAPSQAD---LIFAAKQRPPEKPLILMGASLGD 104 Query: 70 VKKHASVDPLSLH----LAKLFWPGPLTLVLDL--LSTTDIHPLSTANL-KTACFRVPCG 122 + + S ++ +A+ +WPG LTLVL L+ +++P T T RVP Sbjct: 105 LLPYVSGQDSAMAAWQSIAEQYWPGQLTLVLPASDLAPKNLNPHPTDQTAGTLGIRVPDH 164 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK--IGLESTI 180 + + PLA SAN SGQ ++T + ++ + L + SK G+ ST+ Sbjct: 165 PVALALLSQTGPLATTSANLSGQPALTEIS-AIAQMFPSALTLGPEDYQSKAASGMPSTV 223 Query: 181 VNVQCEKKVRILRPGGLEI 199 +ILR G +++ Sbjct: 224 AKWTSHG-WQILRQGKIQL 241 >gi|218439515|ref|YP_002377844.1| SUA5/yciO/yrdC domain protein [Cyanothece sp. PCC 7424] gi|218172243|gb|ACK70976.1| SUA5/yciO/yrdC domain protein [Cyanothece sp. PCC 7424] Length = 212 Score = 122 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 50/197 (25%), Positives = 89/197 (45%), Gaps = 6/197 (3%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 N +R+ +FL+AG I +PT+ Y L + P AI ++ ++K + PLI ++ Sbjct: 11 NLVREIEDFLEAGEVIILPTDISYILVAHAFKPRAIAKIAQLKGWNSPQPLILL-TNRKK 69 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129 V++ V P S L F P P+TL++ + I TA + P F L++ Sbjct: 70 VEEFGVVSPASGKLIDHF-PYPITLIIPKKKS--IPDSITAQHSSLFIACPDQFIYDLVD 126 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 P+ +A S + + ++PLI+DGG K + T+++ E Sbjct: 127 QISFPMVCTTAGFSADYKARRYRTAI-QLFEGQVPLIVDGGDCKYDSKGTLIDCTLETP- 184 Query: 190 RILRPGGLEIETLKRAI 206 IL G + ++ L+ + Sbjct: 185 TILNFGTVSVDDLREIL 201 >gi|282897709|ref|ZP_06305708.1| SUA5/yciO/yrdC-like protein [Raphidiopsis brookii D9] gi|281197388|gb|EFA72285.1| SUA5/yciO/yrdC-like protein [Raphidiopsis brookii D9] Length = 190 Score = 122 bits (308), Expect = 6e-26, Method: Composition-based stats. Identities = 45/193 (23%), Positives = 71/193 (36%), Gaps = 11/193 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 +L + G I+ PT+TV G+A +Y K+R PLI ++ + Sbjct: 4 SLDRLVRGAKEGKIISFPTDTVPGMATIPTKAE---LIYVAKQRSLDKPLILMGAEPESL 60 Query: 71 KKHASVDPLSLHL----AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126 ++ + +WPG LTLVL + T RVP + Sbjct: 61 WEYVKGSDQEYEIWQEVVNRYWPGALTLVLPASDKVPRVMNPQ-DPTTIGIRVPNHPIAR 119 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 I P+A S N SG+ + I +I+ +G+ ST+ E Sbjct: 120 AILAQTGPMATTSVNLSGKPPLETQAEIAVEFPDVLTEELIE--YKGLGVPSTVAKWT-E 176 Query: 187 KKVRILRPGGLEI 199 +ILR G + I Sbjct: 177 NHWQILRQGSIII 189 >gi|163783730|ref|ZP_02178716.1| hypothetical protein HG1285_01498 [Hydrogenivirga sp. 128-5-R1-1] gi|159880976|gb|EDP74494.1| hypothetical protein HG1285_01498 [Hydrogenivirga sp. 128-5-R1-1] Length = 209 Score = 122 bits (308), Expect = 6e-26, Method: Composition-based stats. Identities = 58/201 (28%), Positives = 97/201 (48%), Gaps = 12/201 (5%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 +D ++ A L G I PT+T+YG+ D+ N ++ L + +RP+ P I + D Sbjct: 12 SDPESVPLAVRSLGKGEFIVAPTDTIYGILADALNYNSVAGLKRL-RRPSGRPFIVLIPD 70 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125 +S V K ++ +L L PG +T+V T ++ + + R P GF Sbjct: 71 LSWVAKLG-LEARKENLKLLSLPG-ITVVF--RKKTGLYHWL--GVDSLAVRYPRRGFIY 124 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +L++ YG PL PSAN G +V + + L +DGG + G STI+ Sbjct: 125 RLLKRYGKPLVAPSANPEGLPPARDVGEAMG-YFGDAVSLYVDGGRIE-GTPSTIIKA-- 180 Query: 186 EKKVRILRPGGLEIETLKRAI 206 E+K+ ++R G L + L+R + Sbjct: 181 EEKLEVIRRGSLSPDNLRRLL 201 >gi|296532236|ref|ZP_06894982.1| Sua5/YciO/YrdC/YwlC family protein [Roseomonas cervicalis ATCC 49957] gi|296267433|gb|EFH13312.1| Sua5/YciO/YrdC/YwlC family protein [Roseomonas cervicalis ATCC 49957] Length = 127 Score = 122 bits (307), Expect = 7e-26, Method: Composition-based stats. Identities = 48/118 (40%), Positives = 59/118 (50%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 A+ +A L AG +A PTETVYGL D+RN A+ +Y K RP NPLI H S+ Sbjct: 10 PPPAVEQAAALLRAGRLVAFPTETVYGLGADARNDAAVAAIYAAKGRPRFNPLISHFSES 69 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125 D + LA FWPGPLTLVL + I L+ A L + RVP Sbjct: 70 GAAFAEVVEDDRARALAARFWPGPLTLVLPRSPGSRISELAAAGLPSLAVRVPAHPLA 127 >gi|78778710|ref|YP_396822.1| hypothetical protein PMT9312_0325 [Prochlorococcus marinus str. MIT 9312] gi|78712209|gb|ABB49386.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT 9312] Length = 193 Score = 122 bits (307), Expect = 7e-26, Method: Composition-based stats. Identities = 54/202 (26%), Positives = 84/202 (41%), Gaps = 13/202 (6%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 M++ DS + A + L +GLPI PT+T+ + P +Y+ KKR PLI Sbjct: 1 MNLVDS---KSALKTLTSGLPIIFPTDTLPAIGCL---PKFSNIIYDYKKRDRNKPLILM 54 Query: 64 VSDISMVKKHASVD--PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 S+ + + ++A +WPG LT+V+ + T+ T R+P Sbjct: 55 GSEYKQLIDYVHESAKEDYENIASKYWPGALTMVIPSSEKQT--GILTSKDLTLGLRIPN 112 Query: 122 -GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 + L++ G PL SAN SG I EI I S G STI Sbjct: 113 FHMAQSLLKETG-PLLTSSANISGLTGSITADGIALDFPSVEILEPIPWEKS-SGKASTI 170 Query: 181 VNVQCEKKVRILRPGGLEIETL 202 + + R++R G + + L Sbjct: 171 IFWKKSGDWRLIREGEVLVREL 192 >gi|309811111|ref|ZP_07704908.1| Sua5/YciO/YrdC/YwlC family protein [Dermacoccus sp. Ellin185] gi|308434899|gb|EFP58734.1| Sua5/YciO/YrdC/YwlC family protein [Dermacoccus sp. Ellin185] Length = 207 Score = 122 bits (307), Expect = 7e-26, Method: Composition-based stats. Identities = 34/196 (17%), Positives = 71/196 (36%), Gaps = 4/196 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +R+ + L G IA PT + + L N R+ I+ A + D + Sbjct: 14 PRTVRQVVDALRDGALIAYPTSSGFALGCALGNAEGKERMVRIRHLDAKHDFTLVCEDFA 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + ++ + K PGP T +L + L KT R+ + + Sbjct: 74 QLGQLVQLNNAAFRAIKASTPGPYTFILPATAEVP-RKLVHPKKKTVGVRLDDHPIARAI 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL S Q + ++ E+ ++ID + +++++ + Sbjct: 133 VAELGEPLLSTSLILPDQDEPFTYGWAVKDALDHEVDIVIDADEVEP-RPTSVIDYT-DA 190 Query: 188 KVRILRPGGLEIETLK 203 +LR G ++ + Sbjct: 191 APTVLRVGAGDVARFE 206 >gi|219557202|ref|ZP_03536278.1| hypothetical protein MtubT1_07815 [Mycobacterium tuberculosis T17] Length = 193 Score = 122 bits (307), Expect = 8e-26, Method: Composition-based stats. Identities = 47/196 (23%), Positives = 81/196 (41%), Gaps = 16/196 (8%) Query: 20 DAGLPIAIPTETVYGLAVDSRN---PTAIRRLYEIKKRP--AMNPLICHVSDISMVKKHA 74 G + +PT+TVYG+A + P R +R A+ P+ V ++ Sbjct: 2 QGGPLVVMPTDTVYGIARRFDSSRWPRCCR------QRGGVAICPVGVLVGSWHTIEGLV 55 Query: 75 -SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGH 133 S+ + L + FWPG L+LV+ + T R+P + Sbjct: 56 YSMPDGARELIRAFWPGALSLVVVQAPSLQW--DLGDAHGTVMLRMPLHPVAIELLREVG 113 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 P+A+ SAN SG + + S + + + +D G S+ STIV++ R+LR Sbjct: 114 PMAVSSANISGHPPPVDAEQA-RSQLGDHVAVYLDAGPSEQQAGSTIVDLTGATP-RVLR 171 Query: 194 PGGLEIETLKRAISVE 209 G + E + + V+ Sbjct: 172 QGPVSTERIAEVLGVD 187 >gi|218201509|gb|EEC83936.1| hypothetical protein OsI_30017 [Oryza sativa Indica Group] Length = 314 Score = 122 bits (307), Expect = 8e-26, Method: Composition-based stats. Identities = 41/205 (20%), Positives = 73/205 (35%), Gaps = 17/205 (8%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D+ L E ++ G IPT+TVY + D N ++ RL IK PL + Sbjct: 87 DAWKLEPVVELINRGAVGIIPTDTVYSIVCDLSNNDSVERLRRIKGIGDSKPLSILCRSL 146 Query: 68 SMVKKHASVDPLS--------LHLAKLFWPGPLTLVLDLLSTTDIHPLSTA------NLK 113 + + + P K PGP T +L + + Sbjct: 147 RDIDTYTTGFPRGTNQGQANIFRAVKRVIPGPYTFILPATKELPKQCIRHGSSTRYAKRR 206 Query: 114 TACFRVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKE-IPLIIDGGI 171 R+P + +++ PL S + I++ ++ + I+DGG Sbjct: 207 QVGVRLPDDPICEAILQNLDEPLICTSVKSLSEDEWILDPVIIADIYEQQGLDFIVDGG- 265 Query: 172 SKIGLESTIVNVQCEKKVRILRPGG 196 ++I ST+V++ I + G Sbjct: 266 TRIADPSTVVDMTGSYPTIIRQGKG 290 >gi|115477475|ref|NP_001062333.1| Os08g0531300 [Oryza sativa Japonica Group] gi|42407889|dbj|BAD09030.1| translation factor-like [Oryza sativa Japonica Group] gi|42761369|dbj|BAD11637.1| translation factor-like [Oryza sativa Japonica Group] gi|113624302|dbj|BAF24247.1| Os08g0531300 [Oryza sativa Japonica Group] gi|222640922|gb|EEE69054.1| hypothetical protein OsJ_28055 [Oryza sativa Japonica Group] Length = 313 Score = 122 bits (307), Expect = 8e-26, Method: Composition-based stats. Identities = 41/205 (20%), Positives = 73/205 (35%), Gaps = 17/205 (8%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D+ L E ++ G IPT+TVY + D N ++ RL IK PL + Sbjct: 86 DAWKLEPVVELINRGAVGIIPTDTVYSIVCDLSNNDSVERLRRIKGIGDSKPLSILCRSL 145 Query: 68 SMVKKHASVDPLS--------LHLAKLFWPGPLTLVLDLLSTTDIHPLSTA------NLK 113 + + + P K PGP T +L + + Sbjct: 146 RDIDTYTTGFPRGTNQGQANIFRAVKRVIPGPYTFILPATKELPKQCIRHGSSTRYAKRR 205 Query: 114 TACFRVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKE-IPLIIDGGI 171 R+P + +++ PL S + I++ ++ + I+DGG Sbjct: 206 QVGVRLPDDPICEAILQNLDEPLICTSVKSLSEDEWILDPVIIADIYEQQGLDFIVDGG- 264 Query: 172 SKIGLESTIVNVQCEKKVRILRPGG 196 ++I ST+V++ I + G Sbjct: 265 TRIADPSTVVDMTGSYPTIIRQGKG 289 >gi|322515024|ref|ZP_08068033.1| translation factor [Actinobacillus ureae ATCC 25976] gi|322118975|gb|EFX91148.1| translation factor [Actinobacillus ureae ATCC 25976] Length = 184 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 38/185 (20%), Positives = 66/185 (35%), Gaps = 8/185 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 N L E L +A PTE V+GL + + A+R L ++KKRP LI + Sbjct: 2 NNLENIVEQLKQNNVVAYPTEAVFGLGCNPNSEAAVRALLKLKKRPEEKGLILIAPTKEL 61 Query: 70 VKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTK 125 + + L+ + + +T V+ + + T T R Sbjct: 62 LLPYIDESKLTADHWQIFETSSEQAITWVMP--AKKGVPQYLTGQFDTIAVRLCRVSAVV 119 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 +L E G L S N +GQ + + + P +++ S I ++ Sbjct: 120 ELCERIGFALTSTSCNLTGQEPCRTAEEV-KLQFGTDFP-VLEADTGGKINPSGIRDIFT 177 Query: 186 EKKVR 190 + R Sbjct: 178 QHIFR 182 >gi|33239812|ref|NP_874754.1| putative translation factor (SUA5) [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33237338|gb|AAP99406.1| Putative translation factor (SUA5) [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 195 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 58/193 (30%), Positives = 93/193 (48%), Gaps = 10/193 (5%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 ++ ++LD G P+ IPT+T+ LA +N AI L+ IKKRP PLI S + K Sbjct: 9 KELLQYLDKGSPVLIPTDTLPALATFPKN--AIE-LWNIKKRPKSKPLILMGSTTDQLLK 65 Query: 73 HASVDPL--SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129 + + ++ + +WPG LT+VL ++ +I + + R+P C + + Sbjct: 66 YVLPVAIKDAIRMCSSYWPGALTIVLP--ASGEIVQSLNPSGDSIGIRIPACEVSMDFLN 123 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PLA SAN SGQ + + LS K L + GL ST++ + K Sbjct: 124 KSG-PLATTSANLSGQET-LIDPYELSQCFPKLPLLSPVPWPTSSGLASTLIKWKSPGKW 181 Query: 190 RILRPGGLEIETL 202 ++LR G + + L Sbjct: 182 QLLRRGAVIPKEL 194 >gi|293337061|ref|NP_001168939.1| hypothetical protein LOC100382753 [Zea mays] gi|223973863|gb|ACN31119.1| unknown [Zea mays] Length = 306 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 41/205 (20%), Positives = 74/205 (36%), Gaps = 17/205 (8%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L + ++ G IPT+TVY + D N +I RL +K PL + + Sbjct: 82 LDPIIDLINRGAVGVIPTDTVYSVVCDLSNNESIERLRRLKGIGDSKPLSILCRSLRDID 141 Query: 72 KHASVDPLS--------LHLAKLFWPGPLTLVLDLLSTTDIHPLST------ANLKTACF 117 + + P + K PGP T +L + A + Sbjct: 142 TYTTGFPQGTNQGQANIFRVVKRAIPGPYTFILPASKQFPKQCIKHGSSTRYAKRRQVGV 201 Query: 118 RVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKE-IPLIIDGGISKIG 175 R+P + +++ PL S + I++ + I+DGG +I Sbjct: 202 RIPDDPICQAILQNLDEPLICTSVKYLSEDEWILDPVIIADLYEPLGLDFIVDGGP-RIA 260 Query: 176 LESTIVNVQCEKKVRILRPGGLEIE 200 ST+V++ I + GL+++ Sbjct: 261 DPSTVVDMMGANPTVIRQGKGLKLD 285 >gi|67924899|ref|ZP_00518292.1| SUA5/yciO/yrdC, N-terminal [Crocosphaera watsonii WH 8501] gi|67853266|gb|EAM48632.1| SUA5/yciO/yrdC, N-terminal [Crocosphaera watsonii WH 8501] Length = 199 Score = 121 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 53/193 (27%), Positives = 80/193 (41%), Gaps = 22/193 (11%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 + G I+ PT+TV LA + ++ KKRP PLI S + K+ P Sbjct: 13 VKQGKVISFPTDTVPALAALPNYAS---LIFATKKRPPDKPLILMGSSPKAIWKYVQGTP 69 Query: 79 LSLHL----AKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVPCGFTKKLIETYG 132 + + +WPG LTLVL D++PL + T R+P + I Sbjct: 70 EEFRIWQEVVQKYWPGQLTLVLPASELVPKDMNPLDNS---TIGVRIPDSVIARNILKET 126 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIID------GGISKIGLESTIVNVQCE 186 LA SAN SG+ ++ I+ S L++D G GL ST+ + Sbjct: 127 GCLATTSANLSGEPPKEKLREIVVSFPN---ALVLDKEPLNNGKKYGSGLPSTVAKWTNQ 183 Query: 187 KKVRILRPGGLEI 199 ILR G +++ Sbjct: 184 G-WIILRQGSIQL 195 >gi|126208610|ref|YP_001053835.1| hypothetical protein APL_1140 [Actinobacillus pleuropneumoniae L20] gi|212277671|sp|A3N1E4|RIMN_ACTP2 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|126097402|gb|ABN74230.1| hypothetical protein APL_1140 [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 184 Score = 121 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 41/187 (21%), Positives = 70/187 (37%), Gaps = 12/187 (6%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 N L E L +A PTE V+GL + N +A+R L ++KKRP LI + Sbjct: 2 NNLENIVEQLKRNRVVAYPTEAVFGLGCNPNNESAVRALLKLKKRPEEKGLILIAPTKEL 61 Query: 70 VKKHASVDPLSLHLAKLF-WP--GPLTLVLDLLSTTDIHPLSTANLKTACFR---VPCGF 123 + + + L+ ++F P +T V+ + + T T R +P Sbjct: 62 LLPYIDENKLTAAHWQIFETPSERAITWVMP--AKKAVPQYLTGQFDTIAVRLCCIPA-- 117 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 L E G L S N +GQ + + P +++ + I ++ Sbjct: 118 VIDLCERTGFALTSTSCNLTGQEPCRTADEV-KLQFGADFP-VLEAETAGKTNPPEIRDI 175 Query: 184 QCEKKVR 190 + R Sbjct: 176 FTQHIFR 182 >gi|328675606|gb|AEB28281.1| Sua5 YciO YrdC YwlC family protein [Francisella cf. novicida 3523] Length = 204 Score = 121 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 47/195 (24%), Positives = 82/195 (42%), Gaps = 4/195 (2%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 + + L++ LD IAIPT++ Y LA ++ I ++ +I+ + + D Sbjct: 12 NNLSELKELANILDNDGVIAIPTDSGYALACSMKSKKGIDKIIKIRNLDSSHNFTLCCKD 71 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126 +S + ++A VD + L K + PG T +L L T + T RV + K Sbjct: 72 LSEISEYAKVDNNAYRLLKRYTPGSYTFILKATKKVS-SLLVTKSKNTVGIRVSEHYVPK 130 Query: 127 LIET-YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 I G PL + S G + + + I I +++ +T+V + Sbjct: 131 AISAEIGEPLVVSSFIIPGHQHVVTDCADVDNQIMNYIDAVVESDYCGYD-PTTVVELL- 188 Query: 186 EKKVRILRPGGLEIE 200 E +ILR G EI+ Sbjct: 189 ELPYQILRQGAGEID 203 >gi|300865647|ref|ZP_07110419.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506] gi|300336348|emb|CBN55569.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506] Length = 197 Score = 121 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 52/191 (27%), Positives = 73/191 (38%), Gaps = 13/191 (6%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A + I+ PT+TV LAV P A ++ KKR PLI + + + Sbjct: 12 AAKL--GNQIISFPTDTVPALAV---RPEASELIFTTKKRDREKPLILMGATPEHLWPYI 66 Query: 75 SVDPLSL----HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130 + P L +A WPG LTLVL ++ + T RVP + I Sbjct: 67 TGTPEQLQIWQQIAASHWPGALTLVLPASPKVP-PAMNPTDPTTIGLRVPNLAIAQKILQ 125 Query: 131 YGHPLAIPSANRSGQISITNVKHIL--SSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 PLA SAN SGQ + I + + + GL ST+ Sbjct: 126 QTGPLATTSANLSGQPPLETAAEIQQNFPEVLTLEASELKTTTTASGLPSTVAKWSGN-S 184 Query: 189 VRILRPGGLEI 199 ILR G +E+ Sbjct: 185 WEILRQGAVEL 195 >gi|262341230|ref|YP_003284085.1| Sua5/YciO/YrdC/YwlC family protein [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272567|gb|ACY40475.1| Sua5/YciO/YrdC/YwlC family protein [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 192 Score = 121 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 46/191 (24%), Positives = 82/191 (42%), Gaps = 11/191 (5%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + K+ + L G + PT+TV+GL D+ N AI ++ +IK R +I V + Sbjct: 5 EEIEKSVDILKKGKSLLYPTDTVWGLGCDAFNVEAINKICKIKNRSFSKSMILLVESMDR 64 Query: 70 VKKHA-SVDPLSLHLA---KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFT 124 + + + + + P+T+V D + I + T R+ F Sbjct: 65 LHQLVGKITDFTRQIIVDNIAKKNKPITIVYDHV--NQIASNLLSEDNTLAIRLTYDPFC 122 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE--STIVN 182 LI+ P+ SAN SG S + +S SI +I ++ +I S+I+ Sbjct: 123 VCLIQNLDRPIISTSANLSGFSSPKSFSE-ISPSILSQIDYAVNFRRKEIANHRCSSIIK 181 Query: 183 VQCEKKVRILR 193 + ++ V+ILR Sbjct: 182 IVSDQ-VKILR 191 >gi|149178883|ref|ZP_01857462.1| probable low molecular weight protein-tyrosine-phosphatase ywlE [Planctomyces maris DSM 8797] gi|148842295|gb|EDL56679.1| probable low molecular weight protein-tyrosine-phosphatase ywlE [Planctomyces maris DSM 8797] Length = 369 Score = 121 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 57/238 (23%), Positives = 103/238 (43%), Gaps = 17/238 (7%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + + A ++L G +A PT T Y +A S +P A+ +L + PL+ V Sbjct: 15 DVIHLAVQYLAKGELVAFPTATAYVIAGQSLSPAAMTKLRALTG--GDQPLVLCVKGFDE 72 Query: 70 VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLST----TDIHPLSTANL---KTACFRVPC 121 + + + PL+ LAK WPGP+ L L+ + + P + + R P Sbjct: 73 AQDYLPEMPPLARKLAKRCWPGPVVLELERPQPGSLFSQLPPEVQSEICPGSQLRLRAPA 132 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 ++I P + ++ +E+ L+ID G S+ G +STIV Sbjct: 133 H---EIIFQAMRLSPSPLVLLNEDSKYQTADSLI-DDFGEEVALVIDDGPSRFGDQSTIV 188 Query: 182 NVQCEKKVRILRPGGLEIETLKRAIS-VELEYCVDETS-TPQSPGMLKSHYAPRSQVR 237 + + + +IL+PG + TLKR S + + C T +P + G+ + A + + + Sbjct: 189 GI-VDNQWKILQPGVVTETTLKRLSSEIYMFVCTGNTCRSPMAEGLFRKLLADKLKCQ 245 >gi|254415268|ref|ZP_05029030.1| hypothetical protein MC7420_2694 [Microcoleus chthonoplastes PCC 7420] gi|196178074|gb|EDX73076.1| hypothetical protein MC7420_2694 [Microcoleus chthonoplastes PCC 7420] Length = 205 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 49/196 (25%), Positives = 78/196 (39%), Gaps = 25/196 (12%) Query: 20 DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL 79 ++G ++ PT+T+ LAV ++ +K+R PLI S S + + Sbjct: 14 NSGQIVSFPTDTIPALAVRPDYAE---LIFTLKQRSNNKPLILMGSFPSSLWSYVKGTDA 70 Query: 80 SL----HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPL 135 L +AK +WPG LTLVL T + T RVP I + PL Sbjct: 71 ELEIWQQVAKHYWPGALTLVLPASDKVPAAMNPT-DPTTIGLRVPDSRVAIAILSQTGPL 129 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI-----------GLESTIVNVQ 184 A SAN SG+ + + I + P ++ ++ G ST+V Sbjct: 130 ATTSANVSGKPPLHTMPEIEAE-----FPEVLTLHPTESKELEERHPYSKGAPSTVVKWT 184 Query: 185 CEKKVRILRPGGLEIE 200 + +ILR G + + Sbjct: 185 GDG-WQILRQGAVSFD 199 >gi|302338452|ref|YP_003803658.1| Sua5/YciO/YrdC/YwlC family protein [Spirochaeta smaragdinae DSM 11293] gi|301635637|gb|ADK81064.1| Sua5/YciO/YrdC/YwlC family protein [Spirochaeta smaragdinae DSM 11293] Length = 191 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 57/202 (28%), Positives = 95/202 (47%), Gaps = 19/202 (9%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 +S D N L E L G P+ +P +T+YG+ P + +++ +K R NP + Sbjct: 5 ISKDDPNLLDVLTEVLFRGEPVIMPCDTMYGIVGIV--PASEKKIRALKDRLETNPFLQL 62 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122 + + S++ + + L + +WPG LTL+LD + T R+P Sbjct: 63 I-NFSLLPRVVR-GKVPARLMR-YWPGALTLILDAVEG-----------GTVGVRIPDDE 108 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 ++ IE G PL S N+SGQ +I N + + + LI+D GI G STI+N Sbjct: 109 LLQRCIERVGMPLYSTSVNKSGQPNI-NAIEEIVALFGSRVELIVDAGIMGQGQASTIIN 167 Query: 183 VQCEKKVRILRPGGLEIETLKR 204 + E +LR G + ++ +K Sbjct: 168 ARSE-PYVLLRQGAVCVDGIKN 188 >gi|298493040|ref|YP_003723217.1| SUA5/yciO/yrdC domain-containing protein ['Nostoc azollae' 0708] gi|298234958|gb|ADI66094.1| SUA5/yciO/yrdC domain protein ['Nostoc azollae' 0708] Length = 192 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 47/184 (25%), Positives = 73/184 (39%), Gaps = 11/184 (5%) Query: 20 DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL 79 AG I+ PT TV L + P +Y K+R PLI + + + + Sbjct: 13 KAGKLISFPTGTVPAL---ATIPEQAELIYAAKQRSLDKPLILMAAKTEDLWDYVQGSDI 69 Query: 80 SLHL----AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPL 135 H+ +WPG LTLVL + T + T RVP + I + P+ Sbjct: 70 EYHIWQEVVNRYWPGALTLVLPASNKISQVMNPT-DPTTIGIRVPNHTVAQTILAHTGPM 128 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 A S N SGQ ++ + I E+ + +G+ ST+ +ILR G Sbjct: 129 ATTSVNLSGQPALQTLAEI--EMQFPEVFTLESTEYKGLGIPSTVAKWMGND-WQILRQG 185 Query: 196 GLEI 199 ++I Sbjct: 186 VIKI 189 >gi|87120381|ref|ZP_01076276.1| hypothetical protein MED121_09318 [Marinomonas sp. MED121] gi|86164484|gb|EAQ65754.1| hypothetical protein MED121_09318 [Marinomonas sp. MED121] Length = 185 Score = 120 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 74/189 (39%), Gaps = 7/189 (3%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 M IT + + L G IA PTE V+GL D +N TA+ +L EIK RP +I Sbjct: 1 MIITSDPLI--IADLLKRGGIIAYPTEAVWGLGCDPQNQTAVIKLLEIKSRPMNKGMILA 58 Query: 64 VSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 D + + + P + P + ++ + ++ R+ Sbjct: 59 AGDKTHLSPWLEQLSPELGAKLTATYDSPTSWIVPDQGIAPA--WVRGDHQSIALRLSTH 116 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 + + + + SAN +G +++ I++ I I D + + S I Sbjct: 117 AGVQAICHAFDACIVSTSANPAGLDPALSLEQIMT-YFRDNIDAIFDVPLGQSKQPSQIK 175 Query: 182 NVQCEKKVR 190 ++ ++ +R Sbjct: 176 SLLDDQVIR 184 >gi|304405647|ref|ZP_07387306.1| SUA5/yciO/yrdC domain protein [Paenibacillus curdlanolyticus YK9] gi|304345686|gb|EFM11521.1| SUA5/yciO/yrdC domain protein [Paenibacillus curdlanolyticus YK9] Length = 216 Score = 120 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 50/205 (24%), Positives = 80/205 (39%), Gaps = 8/205 (3%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 + RKA E + G + P++T L ++ AI R + IK RPA + L + Sbjct: 11 NEENFRKAAECVVNGGIVIAPSDTNLALTLNPWKDDAIERAFAIKNRPATSALTLFFLEP 70 Query: 68 SMVKKHAS--VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGFT 124 K +A L A FWPGPL ++L + I T Sbjct: 71 GEWKDYAEAADPGLVQAFADAFWPGPLNIILPKKPS--ISDRMVCGGSTVALGCLSNPVW 128 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVK-HILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + +++ P+A+ SAN SGQ V + + + I+ G STI+++ Sbjct: 129 RGMMKYTNMPVAMTSANLSGQADGVLVDLDLALRQVGGNVDYILKGEAQGTTKSSTIIDL 188 Query: 184 QCEKKVRILRPGGLEIETLKRAISV 208 RI R G + E L + + Sbjct: 189 T--GTPRITRYGDVTREQLNQIAPI 211 >gi|312075017|ref|XP_003140229.1| yrdC domain-containing protein [Loa loa] gi|307764605|gb|EFO23839.1| yrdC domain-containing protein [Loa loa] Length = 232 Score = 120 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 57/219 (26%), Positives = 103/219 (47%), Gaps = 23/219 (10%) Query: 2 QIMSITDSN---ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58 +I+ +++S + + + ++G +A+PT+T+YG+ N +LY++K+R + Sbjct: 10 KIIRLSESTCSATICRCLQIFESGGIVALPTDTLYGVVTTLSNSD---KLYKLKRRNHLK 66 Query: 59 PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 PL VS++ V++ + L + PGP+TL+ + +T + + T R Sbjct: 67 PLGLFVSNVRDVQRWCRQTIDNSQL-RTLLPGPVTLIFER--STFLPRIFNPEHGTVGIR 123 Query: 119 VPCG-FTKKLIETY-GHPLAIPSANRS-GQISITNVKHILSSSICKEIPLIIDGGI---- 171 +P F + L+ PLA SAN S Q + ++ + E+ LIIDGG+ Sbjct: 124 IPDHDFVRSLMTRLDDVPLAQTSANISNNQNNPICIED--FKDLWSELDLIIDGGVILRP 181 Query: 172 -SKIGLE-STIVNVQCEKKVRILRPGG---LEIETLKRA 205 K+ E ST+VN+ I+R G E L+ Sbjct: 182 DGKVNHEGSTVVNLSIPGTYSIIRDGCARTATEEKLRDC 220 >gi|262371339|ref|ZP_06064657.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] gi|262313676|gb|EEY94725.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] Length = 189 Score = 120 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 39/191 (20%), Positives = 68/191 (35%), Gaps = 12/191 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ +A + L G +A PTE V+GL D N A + +IK+RP +I I+ Sbjct: 3 TTSVTEAAQCLKQGQVLAYPTEAVWGLGCDPYNEQAFLDILQIKQRPIEKGVILLAGQIA 62 Query: 69 MVKKHAS-VDPLSLHLAKLFW------PGPLTLVLDLLSTTDIHPLSTANLKTACFRV-P 120 V+ +DP W T +L + I N RV Sbjct: 63 QVEPLLEHLDPRIRQQVIDSWSDRSPSERATTWLLP--ANELIPTWIKGNHPKVAVRVTT 120 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L + + SAN +G +++ + ++G + S I Sbjct: 121 HPICVALCNAFQGFIVSTSANPAGLPPARSLQDANH--YFAQQVNYLNGDLGLSQEPSRI 178 Query: 181 VNVQCEKKVRI 191 ++ + VR Sbjct: 179 LDAETGAVVRA 189 >gi|257455999|ref|ZP_05621208.1| SUA5/YciO/yrdC domain protein [Enhydrobacter aerosaccus SK60] gi|257446588|gb|EEV21622.1| SUA5/YciO/yrdC domain protein [Enhydrobacter aerosaccus SK60] Length = 201 Score = 120 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 45/207 (21%), Positives = 74/207 (35%), Gaps = 22/207 (10%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 MQ + L +FL AG +A PTE V+G+ D N A++++ IK+RP + Sbjct: 1 MQF----NDTQLDAVQQFLQAGNLLAYPTEAVWGIGCDPFNEIAVKQILAIKQRPIEKGM 56 Query: 61 ICHVSDISMVKKHAS-VDPLSLHLAKLFWP----GPLTLVLDLLSTT--DIHPLSTANLK 113 I DI+ ++ + ++ W T +L + ++ I T Sbjct: 57 IVITGDIAHIQPFLQPLPQEVVNTIATSWQSSDAQATTWLLPIPASLQGKIPDWVTGGRD 116 Query: 114 TACFRV-PCGFTKKLIETYGHP--------LAIPSANRSGQISITNVKHILSSSICKEIP 164 + RV KL H L S N SG T+ I Sbjct: 117 SLAIRVISHPMIAKLCNHIAHADNNNPFGFLVSTSCNLSGLTPATDFDAAY-HYFGDAIG 175 Query: 165 LIIDGGISKIGLESTIVNVQCEKKVRI 191 ++ G S I + +++VR Sbjct: 176 YLL-GDTLGFVRPSQIFDALTQQQVRA 201 >gi|46190984|ref|ZP_00120796.2| COG0009: Putative translation factor (SUA5) [Bifidobacterium longum DJO10A] Length = 186 Score = 120 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 47/177 (26%), Positives = 76/177 (42%), Gaps = 7/177 (3%) Query: 36 AVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL-HLAKLFWPG---P 91 A D RN AI R+Y +K+RP L ++ + + P L L+ F PG P Sbjct: 2 ACDPRNKAAIDRIYRLKRRPRYKALQVLLASTDQLDELGLDLPSPLNRLSAAFLPGAFSP 61 Query: 92 LTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNV 151 + + + + + T R+P I PLA SANRSG S V Sbjct: 62 IAVARPDCTLETLADTADGRPGTQGIRIPNSALCLAILKATGPLAASSANRSGDESAQTV 121 Query: 152 KHILSSSICKEIPLIIDGGISKIGLESTIVNVQ--CEKKVRILRPGGLEIETLKRAI 206 + + + E+ L +DGG ++ + ST+V + ILR G + +++A+ Sbjct: 122 QEAV-DAFGSEVDLYLDGGPTQGHVSSTVVKADPYARDGIEILREGVIAQNVIRKAL 177 >gi|242082095|ref|XP_002445816.1| hypothetical protein SORBIDRAFT_07g026230 [Sorghum bicolor] gi|241942166|gb|EES15311.1| hypothetical protein SORBIDRAFT_07g026230 [Sorghum bicolor] Length = 312 Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 39/201 (19%), Positives = 68/201 (33%), Gaps = 17/201 (8%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L + ++ G IPT+TVY + D N +I RL +K PL + + Sbjct: 88 LDPIIDLINRGAVGVIPTDTVYSIVCDLSNNESIERLRRLKGIGDSKPLSILCRSLRDID 147 Query: 72 KHASVDPLS--------LHLAKLFWPGPLTLVLDLLSTTDIHPLSTA------NLKTACF 117 + + P K PGP T +L + + Sbjct: 148 TYTTGFPRGTNQGQANIFRAVKRAIPGPYTFILPATKQFPKQCIKHGSSTRYAKRRQVGV 207 Query: 118 RVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKE-IPLIIDGGISKIG 175 R+P + +++ PL S + I++ + I+DGG +I Sbjct: 208 RIPDDPICQAILQNLDEPLICTSVKYLSEDEWILDPVIIADLYEPLGLDFIVDGGP-RIA 266 Query: 176 LESTIVNVQCEKKVRILRPGG 196 ST+V++ I + G Sbjct: 267 DPSTVVDMMGTNPTIIRQGKG 287 >gi|124025123|ref|YP_001014239.1| putative translation factor (SUA5) [Prochlorococcus marinus str. NATL1A] gi|123960191|gb|ABM74974.1| Putative translation factor (SUA5) [Prochlorococcus marinus str. NATL1A] Length = 199 Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 56/203 (27%), Positives = 83/203 (40%), Gaps = 13/203 (6%) Query: 1 MQIMS----ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56 MQ ++ IT + L G PT+T+ L P ++++ IKKRP+ Sbjct: 1 MQFVAENEMITQQFGIFDLALKLKKGSLALFPTDTLPALC---SYPKYSKKIWTIKKRPS 57 Query: 57 MNPLICHVSDISMVKKHAS--VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT 114 PLI + + SL LAK++WPG LT+VL + + N Sbjct: 58 SKPLILMGGCSDDLFEFVHPCALEESLQLAKIYWPGALTMVLPTIG--NFSKYLNGNSNA 115 Query: 115 ACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174 FRVP + + PLA SAN SG+ + + I I S Sbjct: 116 VGFRVPALRIARDLLMQTGPLATTSANISGETPVKDAMEASIQFPEIPILAPI-PWPSSS 174 Query: 175 GLESTIVNVQCEKKVRILRPGGL 197 G+ ST+V + K +LRPG + Sbjct: 175 GMASTVVEWK-NGKWNLLRPGSV 196 >gi|332298150|ref|YP_004440072.1| SUA5/yciO/yrdC domain protein [Treponema brennaborense DSM 12168] gi|332181253|gb|AEE16941.1| SUA5/yciO/yrdC domain protein [Treponema brennaborense DSM 12168] Length = 193 Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 58/199 (29%), Positives = 91/199 (45%), Gaps = 16/199 (8%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 I+ ++ + L G + IPT+TVYG + P A + IK R P I Sbjct: 2 IILKKEAESADAVVRALRGGHVVIIPTDTVYGFSGIV--PVADAEIRAIKGRSETKPFIR 59 Query: 63 HVSDISMVKKHASVD-PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120 +S V + P SL+ WPG LTL++ L ++ P +TA FR P Sbjct: 60 LISSPEAVFAYTDDSIPDSLY---ALWPGALTLIVTLNASCASFP-----GETAAFRCPG 111 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS--KIGLES 178 + +++I G P+ S NRSGQ + +V + + +E+ LI+D S + L S Sbjct: 112 DEWLRQVIAGCGAPVYSTSVNRSGQPLLRSVAE-MDAEFGREVALIVDAQDSLPQDALPS 170 Query: 179 TIVNVQCEKKVRILRPGGL 197 T+VN+ +LR G + Sbjct: 171 TLVNISG-GTYTVLRQGSV 188 >gi|254373899|ref|ZP_04989381.1| hypothetical protein FTDG_00053 [Francisella novicida GA99-3548] gi|151571619|gb|EDN37273.1| hypothetical protein FTDG_00053 [Francisella novicida GA99-3548] Length = 204 Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 47/195 (24%), Positives = 83/195 (42%), Gaps = 4/195 (2%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 + + L++ LD IAIPT++ Y LA ++ I ++ +I+ + + D Sbjct: 12 NNLSELKELANILDNDGVIAIPTDSGYALACRMKSKKGIDKIIKIRNLDSSHNFTLCCKD 71 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126 +S + ++A VD + L K + PG T +L+ L T + T RV + + Sbjct: 72 LSEISEYAKVDNNAYRLLKRYTPGSYTFILNATKKVS-SLLVTKSKNTVGIRVSEHYVPR 130 Query: 127 LIET-YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 I G PL I S G + + S I + +++ +T+V + Sbjct: 131 AISAEIGEPLVISSFIVPGHQYVVTDCAEVDSQIMNYLDAVVESDYCGYD-PTTVVELL- 188 Query: 186 EKKVRILRPGGLEIE 200 E +ILR G EI+ Sbjct: 189 ELPYQILRQGAGEID 203 >gi|296104309|ref|YP_003614455.1| hypothetical protein ECL_03972 [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058768|gb|ADF63506.1| hypothetical protein ECL_03972 [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 201 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 47/195 (24%), Positives = 85/195 (43%), Gaps = 10/195 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + L G + +PT+T Y LA D N A +++Y++KKR PL V++ + Sbjct: 4 IHNTVAALKRGEVVLVPTDTNYALAADPWNIDACQKIYDLKKRERQKPLTLFVAEPAQAW 63 Query: 72 KHASVDPL----SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKK 126 + +VD + +L PG L +V+ +P + ++ Sbjct: 64 DYIAVDKVQHRAALDKLIGAMPGALNVVVPASDNVPQNPYLKPE--SISLVCNHQSVLRE 121 Query: 127 LIETYGHPLAIPSANRSG-QISITNVKHILSSSICKEIPLIIDGGISKI-GLESTIVNVQ 184 +I +G PL + SAN SG + + + I+ + + STIV++ Sbjct: 122 VIALFGRPLGMSSANLSGVESDCLIDIDAARQTFGDRVGYILPAVQRPVTTVSSTIVSLL 181 Query: 185 CEKKVRILRPGGLEI 199 EK+++ILR G ++I Sbjct: 182 -EKEIKILRAGDMDI 195 >gi|146329578|ref|YP_001209160.1| SUA5/yciO/yrdC domain-containing protein [Dichelobacter nodosus VCS1703A] gi|146233048|gb|ABQ14026.1| Sua5-YciO-YrdC-YwlC domain protein [Dichelobacter nodosus VCS1703A] Length = 208 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 43/194 (22%), Positives = 81/194 (41%), Gaps = 8/194 (4%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 + LD G I P++T Y L A R+ +++ + SD++ + Sbjct: 18 NEILNILDKGGVIVAPSDTGYALLCRLDAKNASVRIRRLRQLDDDHFFTLLCSDLTHLSH 77 Query: 73 HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLST-ANLKTACFRVPCGFTKK-LIET 130 +A VD + L K +PG T +L ++ ++ L KT R+P + LI Sbjct: 78 YARVDNVQFRLLKTLFPGAFTCILP--ASREVPRLVQHEKRKTIGIRLPNHPILQPLITA 135 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 +G L S + + +V + + + + LIID G + ST++++ Sbjct: 136 HGAALMGVSLFDDSERNP-DVYQLDKAQLNS-LDLIIDVGELAV-TPSTVLDLTVM-PPT 191 Query: 191 ILRPGGLEIETLKR 204 I+R G + ++R Sbjct: 192 IIRHGAGDASFIER 205 >gi|282865698|ref|ZP_06274748.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces sp. ACTE] gi|282559342|gb|EFB64894.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces sp. ACTE] Length = 206 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 72/194 (37%), Gaps = 6/194 (3%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + + IA PT++ Y L + I R+ I+ + + + + Sbjct: 17 ISNVADSIRSDALIAYPTDSCYALGTRLGSRDGIDRIRSIRDLDDRHHFTLMCQNFAQLG 76 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCG-FTKKLIE 129 + +D K PG T +L +T ++ L KT R+P T+ L+E Sbjct: 77 QFVQIDNDVFRTVKAATPGSYTFILP--ATKEVPKQLLHPKKKTVGVRIPDHTVTQALLE 134 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PL + + + + + +++D G +T+++ + Sbjct: 135 ELGEPLLSSTLLLPDEEEPLTQGWEIKERLDHVVDIVLDSGDCGT-EPTTVIDFSNGD-L 192 Query: 190 RILRPGGLEIETLK 203 I+R G ++ + Sbjct: 193 EIVRRGAGDVSRFE 206 >gi|294633614|ref|ZP_06712172.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces sp. e14] gi|292830256|gb|EFF88607.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces sp. e14] Length = 155 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 49/147 (33%), Positives = 65/147 (44%), Gaps = 10/147 (6%) Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH- 242 ILRPGG+ E L+ A+ L V TST + PG SHYAPR++V L A Sbjct: 8 LTGDTPSILRPGGVTREDLEAALGHPL--TVPATSTVRVPGQHPSHYAPRARVVLVAPEK 65 Query: 243 -----VNPREALIRFGNVPIKNIENAIISLN--LSKTGKLKEAAFNLFNYMKIADDSGAS 295 RE R G + + + + + L A L+ +++ D G Sbjct: 66 VVHEAEQARELGHRVGVLLPPGLTEDAVPAHAVVPVPDSLTAYARGLYGHLRELDQRGCD 125 Query: 296 SIAFSSIPNHGLGIAINNRLERAAAPR 322 I S GLG+AI NRL RAA PR Sbjct: 126 LIVASLPEEKGLGLAIANRLRRAAGPR 152 >gi|318042639|ref|ZP_07974595.1| hypothetical protein SCB01_13075 [Synechococcus sp. CB0101] Length = 198 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 53/204 (25%), Positives = 84/204 (41%), Gaps = 12/204 (5%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M +S + S+ L AG PT+T+ L + P + L+E+K+RP P+ Sbjct: 1 MSSLSCSPSDL----AHRLQAGEAALFPTDTLPAL---ATKPESAELLWELKQRPRHKPV 53 Query: 61 ICHVSDISMVKKH--ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 I + + + ++P H+A +WPG LTLVL T T R Sbjct: 54 ILMAATGQALLECLGQPIEPAWQHMADRYWPGALTLVLPARGT--WLEQLNPGGSTLGLR 111 Query: 119 VPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 +P + T PLA SANRSG+ + + K + + L + G S Sbjct: 112 LPACPAALELLTLSGPLATTSANRSGEPACLDHKEA-AERFPQVAQLAPVPWPAPSGQGS 170 Query: 179 TIVNVQCEKKVRILRPGGLEIETL 202 T++ + ++LR G L L Sbjct: 171 TVIEWLPSGQWQLLRAGALLPPEL 194 >gi|261416990|ref|YP_003250673.1| Sua5/YciO/YrdC/YwlC family protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373446|gb|ACX76191.1| Sua5/YciO/YrdC/YwlC family protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326738|gb|ADL25939.1| Sua5/YciO/YrdC/YwlC family protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 195 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 40/188 (21%), Positives = 79/188 (42%), Gaps = 9/188 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL-ICHVSDI 67 +++A E L+ + PTE+ Y + ++ + AI +LY +KK P V DI Sbjct: 12 PRIVKQAAEILEDDGLVLYPTESGYAIGCNAESSKAIHKLYALKK-PMKKFFMALIVPDI 70 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126 +A V + ++ K PGP T +L + I R+P F K+ Sbjct: 71 RFATGYAHVSNFAFNIIKQRVPGPYTFILP--ADPHIARKLDVKRPEIGIRIPTHPFFKE 128 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L + + P+ +A S + + + + +++D G +I + +V++ + Sbjct: 129 LFQHFDKPILSTAAKLSEEDMFETDD--IWKTFQHSVDMMVDCGNIEIN-PTNVVSLVGD 185 Query: 187 KKVRILRP 194 V ++R Sbjct: 186 -CVEVIRG 192 >gi|330444529|ref|YP_004377515.1| SUA5 protein [Chlamydophila pecorum E58] gi|328807639|gb|AEB41812.1| SUA5 protein [Chlamydophila pecorum E58] Length = 290 Score = 119 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 55/195 (28%), Positives = 89/195 (45%), Gaps = 16/195 (8%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS--V 76 + G +AIPT+TV+GL +P A +LY++KKR L +V+ + ++K + Sbjct: 17 IQLGKVVAIPTDTVFGLVCSQHSPQAKTQLYQMKKRSKSKTLAVYVNTLEEIEKMIHRPL 76 Query: 77 DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPL 135 L +AK F PGPL+L+L +P + + T FR+ ++LI G PL Sbjct: 77 SSQELRVAKTFLPGPLSLILHNK-----NPEFSES--TLTFRIVNHPVVQELISVCG-PL 128 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 SAN S +L K L I G +GLEST+ +V + R G Sbjct: 129 VGTSANISDFPPAVYAHEVLEDF--KTEDLCIFDGDCFLGLESTVASV---DPFILYREG 183 Query: 196 GLEIETLKRAISVEL 210 + +++ + + Sbjct: 184 VISCVSIESCLEAVV 198 >gi|328676531|gb|AEB27401.1| Sua5 YciO YrdC YwlC family protein [Francisella cf. novicida Fx1] Length = 204 Score = 119 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 47/195 (24%), Positives = 83/195 (42%), Gaps = 4/195 (2%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 + + L++ LD IAIPT++ Y LA ++ I ++ +I+ + + D Sbjct: 12 NNLSELKELANILDNDGVIAIPTDSGYALACRMKSKKGIDKIIKIRNLDSSHNFTLCCKD 71 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126 +S + ++A VD + L K + PG T +L+ L T + T RV + + Sbjct: 72 LSEISEYAKVDNNAYRLLKRYTPGSYTFILNATKKVS-SLLVTKSKNTVGIRVSEHYVPR 130 Query: 127 LIET-YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 I G PL I S G + + S I + +++ +T+V + Sbjct: 131 AISAEIGEPLVISSFIVPGHQYVVTDCAEVDSQIMNYLDAVVESDYCGYDQ-TTVVELL- 188 Query: 186 EKKVRILRPGGLEIE 200 E +ILR G EI+ Sbjct: 189 ELPYQILRQGAGEID 203 >gi|254507292|ref|ZP_05119428.1| Sua5/YciO/YrdC family protein [Vibrio parahaemolyticus 16] gi|219549752|gb|EED26741.1| Sua5/YciO/YrdC family protein [Vibrio parahaemolyticus 16] Length = 111 Score = 119 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 5/107 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + +A L+ G IA PTE V+G+ D NP AI++L E+K+RP LI + Sbjct: 2 DNFDRALNALNDGEVIAYPTEGVFGVGCDPDNPEAIQKLLELKQRPVEKGLILIAASYEQ 61 Query: 70 VKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLK 113 + + L+ + WPGP+T ++ + + + Sbjct: 62 LLPYIDESQLTAQQLEQVHQTWPGPVTWIMPC--SDKVSNWVSGQFD 106 >gi|326522757|dbj|BAJ88424.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 321 Score = 119 bits (299), Expect = 6e-25, Method: Composition-based stats. Identities = 40/205 (19%), Positives = 73/205 (35%), Gaps = 17/205 (8%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L + +++G IPT+TVY + D N +I RL IK PL + + Sbjct: 107 LDPVVDLINSGAVGVIPTDTVYSIVCDLSNNDSIERLRRIKGIVNSKPLSILCRSLRDID 166 Query: 72 KHASVDPLS--------LHLAKLFWPGPLTLVLDLLSTTDIHPLST------ANLKTACF 117 + + P K PGP T +L + A + Sbjct: 167 TYTTGFPQGTNQGQANIFRAVKRILPGPYTFILPATKELPKQCIKHGSSTRYAKRRQVGV 226 Query: 118 RVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKE-IPLIIDGGISKIG 175 R+P + +++ PL S + ++ + I+DGG ++I Sbjct: 227 RMPDDPICQAILQNLEEPLICTSVKNLTEDEWILDPVTIADIYEPLGLDFIVDGG-ARIA 285 Query: 176 LESTIVNVQCEKKVRILRPGGLEIE 200 ST+V++ I + G +++ Sbjct: 286 DPSTVVDMTGSYPTIIRQGKGAKLD 310 >gi|72383532|ref|YP_292887.1| putative translation factor (SUA5) [Prochlorococcus marinus str. NATL2A] gi|72003382|gb|AAZ59184.1| putative translation factor (SUA5) [Prochlorococcus marinus str. NATL2A] Length = 191 Score = 119 bits (299), Expect = 7e-25, Method: Composition-based stats. Identities = 55/194 (28%), Positives = 80/194 (41%), Gaps = 9/194 (4%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 IT + L G PT+T+ L P ++++ IKKRP+ PLI Sbjct: 2 ITQQFGIFDLALKLKKGSLALFPTDTLPALC---SYPKYSKKIWTIKKRPSSKPLILMGG 58 Query: 66 DISMVKKHAS--VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 + + SL LAK++WPG LT+VL + + AN FRVP Sbjct: 59 CSDDLFEFVHPCALEESLQLAKIYWPGALTMVLPTIG--NFSKYLNANSNAVGFRVPALR 116 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + + PLA SAN SG+ + + I I S G+ ST+V Sbjct: 117 IARDLLMQTGPLATTSANISGETPVKDAMEASIQFPEIPILAPI-PWPSSSGMASTVVEW 175 Query: 184 QCEKKVRILRPGGL 197 + K +LRPG + Sbjct: 176 K-NGKWNLLRPGSV 188 >gi|220905671|ref|YP_002480982.1| SUA5/yciO/yrdC domain-containing protein [Cyanothece sp. PCC 7425] gi|219862282|gb|ACL42621.1| SUA5/yciO/yrdC domain protein [Cyanothece sp. PCC 7425] Length = 200 Score = 119 bits (298), Expect = 8e-25, Method: Composition-based stats. Identities = 46/202 (22%), Positives = 73/202 (36%), Gaps = 19/202 (9%) Query: 11 ALRKACEFLDAGL-PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 ++ + +G I+ PT+TV L + P ++ K+R PLI + Sbjct: 5 SIPALVAGVRSGEWLISFPTDTVPAL---ATRPDRAELIFAAKQRQPDKPLILMAATPEA 61 Query: 70 VKKHASVDPLSLHL----AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125 + + + A+ +WPG LTLVL KT R+P Sbjct: 62 LWPYVQGSTAEWQIWQSVAERYWPGALTLVLPASDRLPAVMNPIEG-KTIGVRIPNWGLA 120 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSI-------CKEIPLII-DGGISKIGLE 177 I PLA S NRSGQ + + ++ L D + GL Sbjct: 121 LTILQQTGPLATTSVNRSGQP-PLTALNEIEQQFSQVFTPPAEQWDLPTSDRRDTSAGLP 179 Query: 178 STIVNVQCEKKVRILRPGGLEI 199 ST+ +ILR G +++ Sbjct: 180 STVAKWTPTG-WQILRQGAVQL 200 >gi|224055737|ref|XP_002298628.1| predicted protein [Populus trichocarpa] gi|222845886|gb|EEE83433.1| predicted protein [Populus trichocarpa] Length = 322 Score = 119 bits (298), Expect = 9e-25, Method: Composition-based stats. Identities = 46/219 (21%), Positives = 80/219 (36%), Gaps = 28/219 (12%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN-------- 58 +D+ L E L G IPT+TVY + D ++ +AI RL IK Sbjct: 82 SDTWKLEPVIELLKQGAVGVIPTDTVYAIVCDLKSNSAIERLRRIKNIEPSKARNMASLH 141 Query: 59 -PLICHVSDISMVKKHASVDPLS--------LHLAKLFWPGPLTLVLDLLSTTD---IHP 106 PL + + + + P K PGP T +L + Sbjct: 142 SPLYILCHSLRDIDTYTTGFPRGDGQGHADIFRAVKHCLPGPYTFILTASKELPKQCVRY 201 Query: 107 LST----ANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICK 161 +T A+ K R+P + ++E PL S + +++ Sbjct: 202 GTTTAKYASRKNVGIRMPDDAICQAILEKMDAPLISTSVRSPKENEWMIDPVVIADIYGA 261 Query: 162 E-IPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEI 199 E + +++GGI ++ ST+V++ +I+R G Sbjct: 262 EGLDFVVNGGI-RVADPSTVVDMTGSSP-KIIRQGKGPK 298 >gi|70952331|ref|XP_745341.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56525633|emb|CAH80221.1| hypothetical protein PC000787.03.0 [Plasmodium chabaudi chabaudi] Length = 169 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 79/159 (49%), Gaps = 8/159 (5%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I + + + E + I PTETVYGL +S + +++ ++++K RP +P+I HV Sbjct: 11 IKNDDVKKMLKEHIKKNNLIGFPTETVYGLGGNSLSEISLKNIFKMKNRPVSDPIISHVY 70 Query: 66 DISMV-KKHASVDPLSLHLA----KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 DI+ + ++ ++ F PGPL+++ + + + TA+ + R+P Sbjct: 71 DIAQAFDQLYHINMYEKYIIYILNSNFSPGPLSVI--AKAKEYLPLILTAHTQFCAVRIP 128 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSS 158 +++I+ P+A PSAN+ IS TN H+ Sbjct: 129 NNKIAREIIKICNIPIAAPSANKFQHISPTNSLHVYEEF 167 >gi|93007286|ref|YP_581723.1| SUA5/yciO/yrdC-like [Psychrobacter cryohalolentis K5] gi|122414663|sp|Q1Q7W4|RIMN_PSYCK RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|92394964|gb|ABE76239.1| SUA5/yciO/yrdC-like [Psychrobacter cryohalolentis K5] Length = 214 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 43/209 (20%), Positives = 69/209 (33%), Gaps = 26/209 (12%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 ITDS +A +L G +A PTE+V+G+ D N A+ RL +IK+RP +I Sbjct: 8 ITDSTI--QAATWLKNGQLLAYPTESVWGIGCDPFNKQAVMRLLDIKQRPIEKGMIVVTD 65 Query: 66 DISMVKKHAS----------VDPLSLHLAKLFWPGPLTLVLDLLSTTD--IHPLSTANLK 113 S + +D T +L + I T Sbjct: 66 SPSRITALLEGLTAVERQTVLDSWQADSINATAKQAHTWLLPIPKNLPITIPSWITGAHD 125 Query: 114 TACFRV-PCGFTKKLIETYG------HPLAIPSANRSGQISITNVKHILSSSICKEI--- 163 + RV K+L + S N SG+ ++ S + + Sbjct: 126 SVAVRVIDHPLVKQLCAQMVSVSNPYGFVVSTSCNPSGKPPALSLIEAQSYFLGDNVNSD 185 Query: 164 --PLIIDGGISKIGLESTIVNVQCEKKVR 190 + G L S I + + +R Sbjct: 186 ECVGYLKGETLGYQLPSQIGDALTGQVIR 214 >gi|166363633|ref|YP_001655906.1| putative translation factor [Microcystis aeruginosa NIES-843] gi|166086006|dbj|BAG00714.1| putative translation factor [Microcystis aeruginosa NIES-843] Length = 195 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 52/197 (26%), Positives = 81/197 (41%), Gaps = 12/197 (6%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 + +L + +G ++ PT+TV LAV P A ++ KKR PLI + Sbjct: 2 PTASLNEIVHAALSGQVVSFPTDTVPALAVSP--PYA-ALIFAAKKRTFDKPLILMAASA 58 Query: 68 SMVKKHASVD----PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 + + + + + + + WPG LTLVL L+ N T RVP Sbjct: 59 ADLWDYVEGNQEEREIWRQMTEKHWPGSLTLVLPAAEKVPKV-LNPKNPSTIGIRVPAHA 117 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID---GGISKIGLESTI 180 + I LA SAN SGQ + + I+++ + + GI G ST+ Sbjct: 118 IAREILGRTGVLATTSANLSGQEPLLTPEAIMTTFPSVTVLAPTERQAWGIINSGQPSTV 177 Query: 181 VNVQCEKKVRILRPGGL 197 QC+ ILR G + Sbjct: 178 ARWQCQG-WDILRQGAV 193 >gi|255319592|ref|ZP_05360804.1| Sua5/YciO/YrdC family protein [Acinetobacter radioresistens SK82] gi|262380778|ref|ZP_06073931.1| yrdC [Acinetobacter radioresistens SH164] gi|255303347|gb|EET82552.1| Sua5/YciO/YrdC family protein [Acinetobacter radioresistens SK82] gi|262297726|gb|EEY85642.1| yrdC [Acinetobacter radioresistens SH164] Length = 189 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 63/191 (32%), Gaps = 12/191 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + ++ +A E L G +A PTE V+GL D N A + +K+RP +I +S Sbjct: 3 TTSVTEAAECLSQGKVLAYPTEAVWGLGCDPYNEAAFHEILRLKQRPIEKGVILLAGQLS 62 Query: 69 MVKKH-------ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 V+ + + T +L + I RV Sbjct: 63 QVEHLLVSLNQERQQQVIQQWTQRSVTERATTWLLP--ADEQIPVWIRGQHPKVAVRVTN 120 Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L + + SAN +G ++ S ++G + S I Sbjct: 121 HPLCVALCNAFNSFIVSTSANPAGLEPARTLQEA--SQYFGSELNYLNGDLGLSQQPSRI 178 Query: 181 VNVQCEKKVRI 191 ++ + +R Sbjct: 179 IDAITGEIIRA 189 >gi|78212027|ref|YP_380806.1| hypothetical protein Syncc9605_0477 [Synechococcus sp. CC9605] gi|78196486|gb|ABB34251.1| conserved hypothetical protein [Synechococcus sp. CC9605] Length = 199 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 54/189 (28%), Positives = 86/189 (45%), Gaps = 11/189 (5%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L AG IPT+T+ GLAV L+ +K+RPA PLI + ++ + +V Sbjct: 15 LRAGEAAIIPTDTLPGLAVCPDQAQT---LWRLKRRPADKPLILMGASVNDLLHEVAVPC 71 Query: 79 --LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPL 135 LA+ +WPG LTLVL L+ T R+P C T+ L++ G PL Sbjct: 72 HREVEALAERYWPGALTLVLPARDGGAGRYLNPGGT-TLGCRIPACEQTRALLQISG-PL 129 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIP-LIIDGGISKIGLESTIVNVQCEKKVRILRP 194 A SANRSG+ + + + ++ L G ST++ + + R++R Sbjct: 130 ATTSANRSGEPASMTAAEA--ALVFPDVSQLGPQPWPQPSGQASTVLVWVDDGRWRLVRR 187 Query: 195 GGLEIETLK 203 G + ++ Sbjct: 188 GAVIPAGVE 196 >gi|148725131|emb|CAN84993.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella piezotolerans WP3] Length = 129 Score = 117 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 41/111 (36%), Gaps = 1/111 (0%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 +A + G I PT++ Y L + A+ R+ I++ + D S + + Sbjct: 2 QAVNVIQQGGVIVYPTDSGYALGCLLGDKDAMSRIARIRQIDNDHNFSLMCRDQSELATY 61 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 A VD + + K PGP T + L KT RVP Sbjct: 62 ARVDNQAYRVLKHNTPGPYTFIFKASKEVP-KRLQNPKKKTIGIRVPDNVI 111 >gi|159031016|emb|CAO88719.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 195 Score = 117 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 51/197 (25%), Positives = 83/197 (42%), Gaps = 12/197 (6%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 + +L + +G ++ PT+TV LAV P A ++ KKR PLI + Sbjct: 2 PTASLNEIVHAALSGQVVSFPTDTVPALAVSP--PYA-ALVFAAKKRTFDKPLILMAASA 58 Query: 68 SMVKKHASVD----PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 + + + + + + + +WPG LTLVL L+ + T RVP Sbjct: 59 ADLWDYVKGNQEEREIWRQMTEKYWPGSLTLVLPASEKVPKV-LNPKDSSTIGIRVPAHA 117 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID---GGISKIGLESTI 180 + I LA SAN SGQ + + I+++ + + GI G ST+ Sbjct: 118 IAREILGRTGVLATTSANLSGQEPLLTPEAIMTTFPSVTVLAPTERQAWGIINSGQPSTV 177 Query: 181 VNVQCEKKVRILRPGGL 197 QC ++ ILR G + Sbjct: 178 ARWQC-QRWDILRQGAV 193 >gi|15923968|ref|NP_371502.1| hypothetical protein SAV0978 [Staphylococcus aureus subsp. aureus Mu50] gi|15926567|ref|NP_374100.1| hypothetical protein SA0838 [Staphylococcus aureus subsp. aureus N315] gi|21282589|ref|NP_645677.1| hypothetical protein MW0860 [Staphylococcus aureus subsp. aureus MW2] gi|49485754|ref|YP_042975.1| hypothetical protein SAS0848 [Staphylococcus aureus subsp. aureus MSSA476] gi|57651669|ref|YP_185850.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus COL] gi|87161016|ref|YP_493580.1| hypothetical protein SAUSA300_0880 [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194672|ref|YP_499468.1| hypothetical protein SAOUHSC_00915 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267411|ref|YP_001246354.1| SUA5/yciO/yrdC domain-containing protein [Staphylococcus aureus subsp. aureus JH9] gi|150393464|ref|YP_001316139.1| SUA5/yciO/yrdC domain-containing protein [Staphylococcus aureus subsp. aureus JH1] gi|151221060|ref|YP_001331882.1| hypothetical protein NWMN_0848 [Staphylococcus aureus subsp. aureus str. Newman] gi|156979304|ref|YP_001441563.1| hypothetical protein SAHV_0973 [Staphylococcus aureus subsp. aureus Mu3] gi|161509177|ref|YP_001574836.1| hypothetical protein USA300HOU_0936 [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253316139|ref|ZP_04839352.1| hypothetical protein SauraC_08342 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253731585|ref|ZP_04865750.1| Sua5/YciO/YrdC family protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253732664|ref|ZP_04866829.1| Sua5/YciO/YrdC family protein [Staphylococcus aureus subsp. aureus TCH130] gi|255005767|ref|ZP_05144368.2| hypothetical protein SauraM_04840 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795288|ref|ZP_05644267.1| SUA5/yciO/yrdC domain-containing protein [Staphylococcus aureus A9781] gi|258406937|ref|ZP_05680090.1| SUA5/yciO/yrdC domain-containing protein [Staphylococcus aureus A9763] gi|258421905|ref|ZP_05684826.1| SUA5/yciO/yrdC domain-containing protein [Staphylococcus aureus A9719] gi|258435302|ref|ZP_05689041.1| conserved hypothetical protein [Staphylococcus aureus A9299] gi|258441514|ref|ZP_05690874.1| SUA5/yciO/yrdC domain-containing protein [Staphylococcus aureus A8115] gi|258447213|ref|ZP_05695362.1| conserved hypothetical protein [Staphylococcus aureus A6300] gi|258449973|ref|ZP_05698071.1| SUA5/yciO/yrdC domain-containing protein [Staphylococcus aureus A6224] gi|258452071|ref|ZP_05700087.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|258455486|ref|ZP_05703445.1| conserved hypothetical protein [Staphylococcus aureus A5937] gi|262049328|ref|ZP_06022202.1| hypothetical protein SAD30_1626 [Staphylococcus aureus D30] gi|262052998|ref|ZP_06025175.1| hypothetical protein SA930_1983 [Staphylococcus aureus 930918-3] gi|282894004|ref|ZP_06302235.1| hypothetical protein SGAG_01355 [Staphylococcus aureus A8117] gi|282922257|ref|ZP_06329952.1| conserved hypothetical protein [Staphylococcus aureus A9765] gi|282927200|ref|ZP_06334822.1| conserved hypothetical protein [Staphylococcus aureus A10102] gi|284023904|ref|ZP_06378302.1| hypothetical protein Saura13_04914 [Staphylococcus aureus subsp. aureus 132] gi|294847966|ref|ZP_06788713.1| hypothetical protein SKAG_00021 [Staphylococcus aureus A9754] gi|295405784|ref|ZP_06815593.1| hypothetical protein SMAG_00940 [Staphylococcus aureus A8819] gi|296276110|ref|ZP_06858617.1| hypothetical protein SauraMR_07162 [Staphylococcus aureus subsp. aureus MR1] gi|297208388|ref|ZP_06924818.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297245375|ref|ZP_06929246.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus A8796] gi|300912464|ref|ZP_07129907.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus TCH70] gi|304381469|ref|ZP_07364119.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|13700782|dbj|BAB42078.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus N315] gi|14246747|dbj|BAB57140.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] gi|21204027|dbj|BAB94725.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MW2] gi|49244197|emb|CAG42623.1| hypothetical protein SAS0848 [Staphylococcus aureus subsp. aureus MSSA476] gi|57285855|gb|AAW37949.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus COL] gi|87126990|gb|ABD21504.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202230|gb|ABD30040.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147740480|gb|ABQ48778.1| SUA5/yciO/yrdC, N-terminal domain [Staphylococcus aureus subsp. aureus JH9] gi|149945916|gb|ABR51852.1| SUA5/yciO/yrdC domain protein [Staphylococcus aureus subsp. aureus JH1] gi|150373860|dbj|BAF67120.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156721439|dbj|BAF77856.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|160367986|gb|ABX28957.1| hypothetical protein USA300HOU_0936 [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253724584|gb|EES93313.1| Sua5/YciO/YrdC family protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253729442|gb|EES98171.1| Sua5/YciO/YrdC family protein [Staphylococcus aureus subsp. aureus TCH130] gi|257789260|gb|EEV27600.1| SUA5/yciO/yrdC domain-containing protein [Staphylococcus aureus A9781] gi|257841476|gb|EEV65917.1| SUA5/yciO/yrdC domain-containing protein [Staphylococcus aureus A9763] gi|257842238|gb|EEV66666.1| SUA5/yciO/yrdC domain-containing protein [Staphylococcus aureus A9719] gi|257848963|gb|EEV72946.1| conserved hypothetical protein [Staphylococcus aureus A9299] gi|257852304|gb|EEV76230.1| SUA5/yciO/yrdC domain-containing protein [Staphylococcus aureus A8115] gi|257853961|gb|EEV76915.1| conserved hypothetical protein [Staphylococcus aureus A6300] gi|257856893|gb|EEV79796.1| SUA5/yciO/yrdC domain-containing protein [Staphylococcus aureus A6224] gi|257860286|gb|EEV83118.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|257862304|gb|EEV85073.1| conserved hypothetical protein [Staphylococcus aureus A5937] gi|259159091|gb|EEW44158.1| hypothetical protein SA930_1983 [Staphylococcus aureus 930918-3] gi|259162560|gb|EEW47128.1| hypothetical protein SAD30_1626 [Staphylococcus aureus D30] gi|269940479|emb|CBI48856.1| hypothetical protein SATW20_09770 [Staphylococcus aureus subsp. aureus TW20] gi|282590889|gb|EFB95964.1| conserved hypothetical protein [Staphylococcus aureus A10102] gi|282593547|gb|EFB98541.1| conserved hypothetical protein [Staphylococcus aureus A9765] gi|282763490|gb|EFC03619.1| hypothetical protein SGAG_01355 [Staphylococcus aureus A8117] gi|285816657|gb|ADC37144.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus 04-02981] gi|294824766|gb|EFG41188.1| hypothetical protein SKAG_00021 [Staphylococcus aureus A9754] gi|294969219|gb|EFG45239.1| hypothetical protein SMAG_00940 [Staphylococcus aureus A8819] gi|296887127|gb|EFH26030.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297177678|gb|EFH36928.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus A8796] gi|298694217|gb|ADI97439.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus ED133] gi|300886710|gb|EFK81912.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus TCH70] gi|304339832|gb|EFM05776.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312829374|emb|CBX34216.1| yrdC domain protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315130441|gb|EFT86428.1| hypothetical protein CGSSa03_03433 [Staphylococcus aureus subsp. aureus CGS03] gi|315197330|gb|EFU27668.1| hypothetical protein CGSSa01_00481 [Staphylococcus aureus subsp. aureus CGS01] gi|320141206|gb|EFW33053.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320143263|gb|EFW35053.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus MRSA177] gi|329313645|gb|AEB88058.1| SUA5/yciO/yrdC, N-terminal domain protein [Staphylococcus aureus subsp. aureus T0131] gi|329726220|gb|EGG62690.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus 21189] gi|329728282|gb|EGG64721.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus 21172] gi|329729046|gb|EGG65458.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus 21193] Length = 213 Score = 117 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 47/199 (23%), Positives = 87/199 (43%), Gaps = 9/199 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS--V 76 L G P+ +PT+T Y L N I +++E KKR PL + K + Sbjct: 18 LQDGFPVIVPTDTNYNLCSLPNNDLCIDKIFEYKKRSKDKPLSLFIDKPEDWKLYGDNQN 77 Query: 77 DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLA 136 + L ++FWPGPL ++L ++ + ++ ++ C V ++ I P+A Sbjct: 78 TEIVDKLVEIFWPGPLNIILKNKTSYNYMLNNSDSIAIGC--VQNKTMRRFISYINSPIA 135 Query: 137 IPSANRSG--QISITNVKHILSSSICKEIPLIIDG-GISKIGLESTIVNVQCEKKVRILR 193 I SAN SG + + + + + ++ + STI+ V + K+ +LR Sbjct: 136 ITSANISGTADDILITENEAIKH-MGENVRYMLRSQNKTNYKTSSTIIKVT-DNKIELLR 193 Query: 194 PGGLEIETLKRAISVELEY 212 G ++ E +K + + Y Sbjct: 194 EGDIKFEEIKERLGTGIIY 212 >gi|33866507|ref|NP_898066.1| hypothetical protein SYNW1975 [Synechococcus sp. WH 8102] gi|33633285|emb|CAE08490.1| conserved hypothetical protein [Synechococcus sp. WH 8102] Length = 201 Score = 117 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 49/194 (25%), Positives = 84/194 (43%), Gaps = 10/194 (5%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 + + L G IPT+TV GLA+ P A ++ +K+RPA PLI + ++ +H Sbjct: 13 ELADHLLQGGAAVIPTDTVPGLAIAP--PHA-GDIWRLKRRPADKPLILMGATAEVLLRH 69 Query: 74 ASVD--PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130 A + +A+ WPG LTLV+ + + R+P C +++L+ Sbjct: 70 AQPSCRDDARWMAERHWPGALTLVVP--AHGAVLEALNPGGTCLGLRIPNCRQSRELLHR 127 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G PLA SAN SG+ + + L + G ST+++ + Sbjct: 128 TG-PLATSSANPSGEPAAMT-PEQAAVYFPNLPQLGPQPWLPPSGQASTVISWTSSGRWN 185 Query: 191 ILRPGGLEIETLKR 204 +LR G + + + Sbjct: 186 VLRQGAVIPQGITE 199 >gi|332976018|gb|EGK12889.1| Sua5/YciO/YrdC/YwlC family protein [Psychrobacter sp. 1501(2011)] Length = 228 Score = 117 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 73/230 (31%), Gaps = 42/230 (18%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M + + + + +A ++L G +A PTE+V+G+ D+ N A+ ++ IK RPA + Sbjct: 1 MNLNTQNITTEIEQAAQWLQQGKLLAYPTESVWGIGCDAYNEEAVNQILTIKNRPAEKGM 60 Query: 61 ICHVSDISMVKKHASVDPLSL--HLAKLFWP------------GPLTLVLDLL------- 99 I +I V+ P+ + + P T +L L Sbjct: 61 IVVTDNIDRVRPLIDQLPVQRQQQIIDSWAPQSNKGDASRDTQQAHTWLLPLPLSKSELQ 120 Query: 100 ------------STTDIHPLSTANLKTACFRV-PCGFTKKLIETYG------HPLAIPSA 140 I T + RV +L + + S Sbjct: 121 SKSESELTALAQQDPVIPYWITGKHNSIAVRVINHPLIAQLCKKMVSDSNPYGLIVSTSC 180 Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 N SGQ + + KE + G L S I +R Sbjct: 181 NPSGQAPAVTFEQAYA--YFKEDIGYLQGDTLGYTLPSQIREGLTGDIIR 228 >gi|323443843|gb|EGB01455.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus O46] Length = 213 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 47/199 (23%), Positives = 87/199 (43%), Gaps = 9/199 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS--V 76 L G P+ +PT+T Y L N I +++E KKR PL + K + Sbjct: 18 LQDGFPVIVPTDTNYNLCSLPNNDLCIDKIFEYKKRSKDKPLSLFIDKPEDWKLYGDNQN 77 Query: 77 DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLA 136 + L ++FWPGPL ++L ++ + ++ ++ C V ++ I P+A Sbjct: 78 TEIVDKLVEIFWPGPLNIILKNKTSYNYMLNNSDSIAIGC--VQNKTMRRFISYIKSPIA 135 Query: 137 IPSANRSG--QISITNVKHILSSSICKEIPLIIDG-GISKIGLESTIVNVQCEKKVRILR 193 I SAN SG + + + + + ++ + STI+ V + K+ +LR Sbjct: 136 ITSANISGTADDILITENEAIKH-MGENVRYMLRSQNKTNYKTSSTIIKVT-DNKIELLR 193 Query: 194 PGGLEIETLKRAISVELEY 212 G ++ E +K + + Y Sbjct: 194 EGDIKFEEIKERLGTGIIY 212 >gi|329118384|ref|ZP_08247090.1| translation factor RimN [Neisseria bacilliformis ATCC BAA-1200] gi|327465430|gb|EGF11709.1| translation factor RimN [Neisseria bacilliformis ATCC BAA-1200] Length = 187 Score = 117 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 39/191 (20%), Positives = 71/191 (37%), Gaps = 8/191 (4%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 +I+S ++ L+ L G IA PTE+ YG+ R+ A++ L +K+RP +I Sbjct: 3 RILSAAETGRLK---NRLRRGGLIAYPTESCYGIGCLPRHAGALKSLVRLKRRPQHKGMI 59 Query: 62 CHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 +S ++ + WP T +L + L RVP Sbjct: 60 VVGDSLSRLRPLLRPLFAADAAALDGIWPARQTFLLPAARNVPV-LLRGRGRGKLAVRVP 118 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + + G PL S NR+G+ + + + ++ G S Sbjct: 119 AHAAARDVCYLLGTPLVSTSCNRAGKRPCRSAREVRRQF--GRDVYVVGGRCGGSKTPSR 176 Query: 180 IVNVQCEKKVR 190 I + +++R Sbjct: 177 ISDWATGERLR 187 >gi|260434270|ref|ZP_05788240.1| possible translation factor [Synechococcus sp. WH 8109] gi|260412144|gb|EEX05440.1| possible translation factor [Synechococcus sp. WH 8109] Length = 204 Score = 117 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 51/188 (27%), Positives = 80/188 (42%), Gaps = 9/188 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L AG IPT+T+ GLAV L+ +K+RPA PLI + + + +V Sbjct: 20 LRAGEAAIIPTDTLPGLAVRPDQAQT---LWRLKRRPADKPLILMGASVKDLLHDVAVPC 76 Query: 79 --LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLA 136 LA+ +WPG LTLVL L+ T R+P + + PLA Sbjct: 77 HREVAALAERYWPGALTLVLPARDGGAGRYLNPGGT-TLGCRIPAWEQTRALLQISGPLA 135 Query: 137 IPSANRSGQISITNVKHILSSSICKEIP-LIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 SANRSG+ + + + ++ L G ST++ E + R++R G Sbjct: 136 TTSANRSGEPASMTAAEA--ALVFPDVAQLGPQPWPQPSGQASTVLVWVEEGRWRLVRRG 193 Query: 196 GLEIETLK 203 + ++ Sbjct: 194 AVIPAGVE 201 >gi|108804486|ref|YP_644423.1| translation factor SUA5 [Rubrobacter xylanophilus DSM 9941] gi|108765729|gb|ABG04611.1| translation factor SUA5 [Rubrobacter xylanophilus DSM 9941] Length = 191 Score = 116 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 59/189 (31%), Positives = 80/189 (42%), Gaps = 19/189 (10%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVD 77 + G +PTETV GL + + R+YEIK R P+ A V Sbjct: 13 IREGAVALVPTETVVGLVA---SEAGLERIYEIKVRERGKPIALLCRSAEEAFSLAAKVP 69 Query: 78 PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAI 137 PL+ LA L+WPGPLTLVLD T RVP G + +++ YG PL Sbjct: 70 PLARTLADLYWPGPLTLVLDR-----------PGGGTIGLRVPRGRVRDVLDAYGGPLYA 118 Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG-G 196 SAN SG+ + + K ++ G G S +V++ VR+LR Sbjct: 119 TSANISGERDPRALDEVDPRVKEKVDVVV--EGEPGGGQASAVVDLSGGG-VRLLRAAEH 175 Query: 197 LEIETLKRA 205 L E L R Sbjct: 176 LTEERLARL 184 >gi|49483139|ref|YP_040363.1| hypothetical protein SAR0941 [Staphylococcus aureus subsp. aureus MRSA252] gi|257425028|ref|ZP_05601455.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257427692|ref|ZP_05604091.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257430327|ref|ZP_05606710.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus 68-397] gi|257433024|ref|ZP_05609384.1| SUA5/yciO/yrdC domain-containing protein [Staphylococcus aureus subsp. aureus E1410] gi|257435928|ref|ZP_05611976.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M876] gi|282903515|ref|ZP_06311406.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus C160] gi|282905293|ref|ZP_06313150.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282908272|ref|ZP_06316103.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910553|ref|ZP_06318357.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282913751|ref|ZP_06321539.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus M899] gi|282916229|ref|ZP_06323991.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp. aureus D139] gi|282923728|ref|ZP_06331406.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp. aureus C101] gi|283770045|ref|ZP_06342937.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp. aureus H19] gi|293500791|ref|ZP_06666642.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp. aureus 58-424] gi|293509744|ref|ZP_06668454.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp. aureus M809] gi|293526330|ref|ZP_06671016.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus M1015] gi|295427461|ref|ZP_06820095.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp. aureus EMRSA16] gi|297590179|ref|ZP_06948818.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus MN8] gi|49241268|emb|CAG39947.1| hypothetical protein SAR0941 [Staphylococcus aureus subsp. aureus MRSA252] gi|257272598|gb|EEV04721.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257275885|gb|EEV07358.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257279104|gb|EEV09715.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus 68-397] gi|257282439|gb|EEV12574.1| SUA5/yciO/yrdC domain-containing protein [Staphylococcus aureus subsp. aureus E1410] gi|257285119|gb|EEV15238.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M876] gi|282314115|gb|EFB44506.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp. aureus C101] gi|282319669|gb|EFB50017.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp. aureus D139] gi|282322363|gb|EFB52686.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus M899] gi|282325945|gb|EFB56253.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282327937|gb|EFB58219.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331700|gb|EFB61212.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282596470|gb|EFC01431.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus C160] gi|283460192|gb|EFC07282.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp. aureus H19] gi|290920872|gb|EFD97934.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus M1015] gi|291095796|gb|EFE26057.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp. aureus 58-424] gi|291467419|gb|EFF09935.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp. aureus M809] gi|295128597|gb|EFG58229.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp. aureus EMRSA16] gi|297576478|gb|EFH95193.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus MN8] gi|312438658|gb|ADQ77729.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus TCH60] gi|315194510|gb|EFU24902.1| hypothetical protein CGSSa00_12335 [Staphylococcus aureus subsp. aureus CGS00] Length = 213 Score = 116 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 47/199 (23%), Positives = 87/199 (43%), Gaps = 9/199 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS--V 76 L G P+ +PT+T Y L N I +++E KKR PL + K + Sbjct: 18 LQDGFPVIVPTDTNYNLCSLPNNDLCIDKIFEYKKRSKDKPLSLFIDKPEDWKLYGDNQN 77 Query: 77 DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLA 136 + L ++FWPGPL ++L ++ + ++ ++ C V ++ I P+A Sbjct: 78 TEIVDKLVEIFWPGPLNIILKNKTSYNYMLNNSDSIAIGC--VQNKTMRRFISYINSPIA 135 Query: 137 IPSANRSG--QISITNVKHILSSSICKEIPLIIDG-GISKIGLESTIVNVQCEKKVRILR 193 I SAN SG + + + + + ++ + STI+ V + K+ +LR Sbjct: 136 ITSANISGTANDILITENEAIKH-MGENVRYMLRSQNKTNYKTSSTIIKVT-DNKIELLR 193 Query: 194 PGGLEIETLKRAISVELEY 212 G ++ E +K + + Y Sbjct: 194 EGDIKFEEIKERLGTGIIY 212 >gi|226952179|ref|ZP_03822643.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter sp. ATCC 27244] gi|226837017|gb|EEH69400.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter sp. ATCC 27244] Length = 189 Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats. Identities = 40/191 (20%), Positives = 67/191 (35%), Gaps = 12/191 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++++ A + L G +A PTE V+GL D N A + + E K RP +I I Sbjct: 3 TSSVADAAQLLKQGQVLAYPTEAVWGLGCDPFNEQAFQNVLECKHRPIEKGVILLAGCIE 62 Query: 69 MVKK-HASVDPLSLHLAKLFW------PGPLTLVLDLLSTTDIHPLSTANLKTACFRV-P 120 V+ ++P H W T +L + I RV Sbjct: 63 QVEHLLQDLEPAIRHQVINSWSDRVETERATTWLLP--ADQHIPTWIKGQHPLVAVRVTT 120 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 +L +G + SAN +G +++ + + G + S I Sbjct: 121 HPLCVQLCHHFGGFVVSTSANPAGLAPARSLEEA--HNYFGHSLHYLAGNLGLSQEPSRI 178 Query: 181 VNVQCEKKVRI 191 +N + VR Sbjct: 179 LNALTGEVVRA 189 >gi|147790869|emb|CAN77236.1| hypothetical protein VITISV_024209 [Vitis vinifera] Length = 750 Score = 115 bits (290), Expect = 6e-24, Method: Composition-based stats. Identities = 37/96 (38%), Positives = 56/96 (58%), Gaps = 1/96 (1%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 + TD++A +A E + AG IA+PT+T+YG A D+ + A+ R+YEIK R +PL Sbjct: 612 VRPATDAHA-EEAIEAIKAGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAI 670 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDL 98 V D+ +++ A D L L PGP+T+VL Sbjct: 671 CVGDVLDIQRFAVTDHLPDGLLGSLLPGPVTVVLRR 706 >gi|282851603|ref|ZP_06260968.1| conserved domain protein [Lactobacillus gasseri 224-1] gi|282557571|gb|EFB63168.1| conserved domain protein [Lactobacillus gasseri 224-1] Length = 82 Score = 115 bits (290), Expect = 8e-24, Method: Composition-based stats. Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 1/82 (1%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+ I + +A E L G +A PTETVYGL + N A++ +Y K RP+ NPL Sbjct: 1 MET-KIFSKKQIPEAVELLKKGELVAFPTETVYGLGALATNEKAVKGVYAAKGRPSDNPL 59 Query: 61 ICHVSDISMVKKHASVDPLSLH 82 I VSD M++ + + P Sbjct: 60 IVTVSDEKMMENYVNEVPERAK 81 >gi|145349506|ref|XP_001419173.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144579404|gb|ABO97466.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 244 Score = 115 bits (289), Expect = 8e-24, Method: Composition-based stats. Identities = 48/209 (22%), Positives = 81/209 (38%), Gaps = 26/209 (12%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L + E + G AIPT+T Y D N A+++LY+IK PL + + Sbjct: 19 LDQVAEAIRRGEVGAIPTDTKYAFVADLTNADAVQKLYDIKDAGLNKPLSILCRGFADID 78 Query: 72 KHASVDP--------LSLHLAKLFWPGPLTLVLDLLSTTDIHPLST----------ANLK 113 + + P L LAK PGP T +L L + K Sbjct: 79 AYTTGFPNNPKPGATLPFKLAKQCLPGPYTFILPASKELPKVCLVDKSTKDKARQCKSRK 138 Query: 114 TACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKE-IPLIIDGGI 171 T R+P C T+ L++ PL + + ++ + + I+D G Sbjct: 139 TVGVRIPACEVTRALLDLLDAPLMCSTV-----PECDDEPAVIHDTYLPRGLGFIVDIGE 193 Query: 172 SKIGLESTIVNVQCEKKVRILRPGGLEIE 200 ++ ST+V++ + R+LR G + + Sbjct: 194 RQMAAASTVVDLSAGEP-RVLRRGAGDPD 221 >gi|228470823|ref|ZP_04055671.1| Sua5/YciO/YrdC/YwlC family protein [Porphyromonas uenonis 60-3] gi|228307496|gb|EEK16501.1| Sua5/YciO/YrdC/YwlC family protein [Porphyromonas uenonis 60-3] Length = 200 Score = 115 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 40/193 (20%), Positives = 75/193 (38%), Gaps = 10/193 (5%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM-NPLICHVSD 66 D +R+ + L++G I PT Y L + A+ ++ +IK + + L D Sbjct: 11 DYAVVREVVQCLESGGVIIYPTGVGYALGCSALKKRAVEQVCQIKGVDSKRHTLAIMCQD 70 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTK 125 + V ++A + + L K P T +L +T K + T+ Sbjct: 71 LGEVAQYAKLGNETFALMKSGEYEPATYILPPTTTLPAP---FRQRKEVGVQLCKHPVTR 127 Query: 126 KLIETYGHPLAI---PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 ++E PL P + ++ ++ LIIDGG++ G S I++ Sbjct: 128 IILEELEAPLLTGSLPDLPEGYDTNYLTDPELIEEYYGHQVDLIIDGGVAPGG-HSAILD 186 Query: 183 VQCEKKVRILRPG 195 + ++LR G Sbjct: 187 CTGAEP-QLLREG 198 >gi|113475329|ref|YP_721390.1| SUA5/yciO/yrdC-like [Trichodesmium erythraeum IMS101] gi|110166377|gb|ABG50917.1| SUA5/yciO/yrdC-like [Trichodesmium erythraeum IMS101] Length = 197 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 47/205 (22%), Positives = 78/205 (38%), Gaps = 16/205 (7%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M ++SI + A +G ++ PT+TV LA ++++K R P+ Sbjct: 1 MSLVSI--ETLIEGAI----SGNLVSFPTDTVPALAARPDRAN---LIFQVKGRSQDKPV 51 Query: 61 ICHVSDISMVKKHASVDPLSLHLAK----LFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 I ++ + + + L L + +WPG LTLVL T Sbjct: 52 ILMGANAASLWPYICGSDQELQLWQRVAGKYWPGQLTLVLPASEMVPRVMNPVEGT-TIG 110 Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI--SKI 174 RVP + I PLA SAN SGQ ++ + I + + Sbjct: 111 VRVPNCDIARKIMARTGPLATTSANISGQPTLGKMAEISRQFPEVLVVSLSQSEEIMLTS 170 Query: 175 GLESTIVNVQCEKKVRILRPGGLEI 199 G+ ST+ + ILR G +++ Sbjct: 171 GVPSTVAKWNGIARWEILRQGAVKL 195 >gi|118576874|ref|YP_876617.1| translation factor [Cenarchaeum symbiosum A] gi|118195395|gb|ABK78313.1| translation factor [Cenarchaeum symbiosum A] Length = 189 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 1/95 (1%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 D + +R+A + + +G I PT+TVYG+ D + A+ ++ IK R PL I Sbjct: 23 DEDGIRRAVDAVRSGGVIVFPTDTVYGMGCDPYDAKAVGEIFRIKGRDPEKPLPLLAHSI 82 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTT 102 ++ A++ + FWPGPLT+V +L Sbjct: 83 GDLEGVAAL-EGYGGMTSRFWPGPLTIVAELRDGR 116 >gi|294648882|ref|ZP_06726338.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter haemolyticus ATCC 19194] gi|292825273|gb|EFF84020.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter haemolyticus ATCC 19194] Length = 189 Score = 114 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 40/191 (20%), Positives = 66/191 (34%), Gaps = 12/191 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++++ A + L G +A PTE V+GL D N A + + E K RP +I I Sbjct: 3 TSSVADAAQLLKQGQVLAYPTEAVWGLGCDPFNEQAFQNVLECKHRPIEKGVILLAGCIE 62 Query: 69 MVKK-HASVDPLSLHLAKLFW------PGPLTLVLDLLSTTDIHPLSTANLKTACFRV-P 120 V+ ++P H W T +L + I RV Sbjct: 63 QVEHLLQDLEPAIRHQVINSWSDRVETERATTWLLP--ADQHIPTWIKGQHPLVAVRVTT 120 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 +L +G + SAN +G ++ + + G + S I Sbjct: 121 HPLCVQLCHHFGGFVVSTSANPAGLAPARSLGEA--QNYFGHSLHYLAGNLGLSQEPSRI 178 Query: 181 VNVQCEKKVRI 191 +N + VR Sbjct: 179 LNALTGEVVRA 189 >gi|257457519|ref|ZP_05622686.1| Sua5/YciO/YrdC/YwlC family protein [Treponema vincentii ATCC 35580] gi|257444905|gb|EEV19981.1| Sua5/YciO/YrdC/YwlC family protein [Treponema vincentii ATCC 35580] Length = 182 Score = 114 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 49/183 (26%), Positives = 83/183 (45%), Gaps = 19/183 (10%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 L G I IPT+T+YG + + IK R P I +++ + + ++ + Sbjct: 18 LKKGNVIIIPTDTIYGFSGLIGKTA--ELIARIKGREENKPFIALIAEPADIYRYTEL-K 74 Query: 79 LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAI 137 + H+ WP PLTL++ L T FR P + + ++ G + Sbjct: 75 IPEHIL-NLWPAPLTLIVPLK-----------GQGTQAFRCPADEWLRSVVAAAGDAVYS 122 Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197 S NRSG +T++K I + L++DGG + GL ST+V++ R+LR G + Sbjct: 123 TSVNRSGTSPLTDIKTICKE-FEDSVGLVVDGGNLE-GLPSTLVDLTSGTP-RVLRQGSV 179 Query: 198 EIE 200 I+ Sbjct: 180 VID 182 >gi|126640266|ref|YP_001083250.1| putative Sua5/YciO/YrdC/YwlC family protein [Acinetobacter baumannii ATCC 17978] Length = 171 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 61/174 (35%), Gaps = 12/174 (6%) Query: 26 AIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK-HASVDPLSLHLA 84 A PTE V+GL D N A +++ E+K+RP +I IS V+ S+ + Sbjct: 2 AYPTEAVWGLGCDPFNEQAFQKILELKQRPIEKGVILLAGHISQVEHLLTSLPQTTQQEI 61 Query: 85 KLFWP------GPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGFTKKLIETYGHPLAI 137 W T +L + I RV L + + Sbjct: 62 IDCWTNHQPSERATTWLLP--ADQHIPSWIKGEHPLVAVRVTTHPLCVALCNAFHGFIVS 119 Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 SAN SGQ +++ ++G + + S I+N + +R Sbjct: 120 TSANPSGQEPAHSLQDAC--QYFGSQLNYLNGDLGQSQQPSRIINALTGEVIRP 171 >gi|37522843|ref|NP_926220.1| hypothetical protein glr3274 [Gloeobacter violaceus PCC 7421] gi|35213845|dbj|BAC91215.1| glr3274 [Gloeobacter violaceus PCC 7421] Length = 197 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 49/181 (27%), Positives = 74/181 (40%), Gaps = 10/181 (5%) Query: 16 CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-A 74 +L AG A+PT+TV GL P ++Y +K R PLI + + + + A Sbjct: 22 AAYLRAGGVGAMPTDTVPGLVCL---PEYAEQIYALKGRDEHKPLILLGAAAADLAFYTA 78 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHP 134 LA+ WPG LTLVL + + T R+P + P Sbjct: 79 QWRSEWTELAERGWPGALTLVLPV--GGRVPAAVHRGGGTVGVRIPNHPDAHALLAKTGP 136 Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194 LA SANRSGQ + + + ++ G G ST+V + + ++LR Sbjct: 137 LASTSANRSGQPVLIE-PQAIRRTFAG--VALLAGTYRGSGTASTVVRWEDDG-WQVLRQ 192 Query: 195 G 195 G Sbjct: 193 G 193 >gi|308807076|ref|XP_003080849.1| translation factor-like (ISS) [Ostreococcus tauri] gi|116059310|emb|CAL55017.1| translation factor-like (ISS) [Ostreococcus tauri] Length = 308 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 49/225 (21%), Positives = 78/225 (34%), Gaps = 22/225 (9%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L E + G AIPT+T Y D N +A+++LY+IK PL + + Sbjct: 84 LDAVAEAIRRGAVGAIPTDTKYAFVADMSNASAVQKLYDIKGCGYNKPLSILCRGFADID 143 Query: 72 KHASVDP--------LSLHLAKLFWPGPLTLVLDLLSTTDIHPLST----------ANLK 113 + + P L LAK PGP T +L L + K Sbjct: 144 AYTTGFPKNVKPGETLPFKLAKKCLPGPYTFILPASKELPKVCLGDNSTKEKAKQCKSRK 203 Query: 114 TACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173 T R+P + + + S I + + + +ID G + Sbjct: 204 TVGVRIPDCDVTRALLDLLDAPLMCSTVPECDDEP---AVIYDEYLSRGLGFMIDTGERR 260 Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETS 218 ST+V++ + RILR G + EL D+ + Sbjct: 261 ASAASTVVDLSSGEP-RILRRGAGDPNVWSSIDEEELVESDDDAA 304 >gi|269202591|ref|YP_003281860.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus ED98] gi|262074881|gb|ACY10854.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus ED98] Length = 213 Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 46/199 (23%), Positives = 86/199 (43%), Gaps = 9/199 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS--V 76 L G P+ +PT+T Y L N I +++E KKR PL + K + Sbjct: 18 LQDGFPVIVPTDTNYNLCSLPNNDLCIDKIFEYKKRSKDKPLSLFIDKPEDWKLYGDNQN 77 Query: 77 DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLA 136 + L ++FW GPL ++L ++ + ++ ++ C V ++ I P+A Sbjct: 78 TEIVDKLVEIFWSGPLNIILKNKTSYNYMLNNSDSIAIGC--VQNKTMRRFISYINSPIA 135 Query: 137 IPSANRSG--QISITNVKHILSSSICKEIPLIIDG-GISKIGLESTIVNVQCEKKVRILR 193 I SAN SG + + + + + ++ + STI+ V + K+ +LR Sbjct: 136 ITSANISGTADDILITENEAIKH-MGENVRYMLRSQNKTNYKTSSTIIKVT-DNKIELLR 193 Query: 194 PGGLEIETLKRAISVELEY 212 G ++ E +K + + Y Sbjct: 194 EGDIKFEEIKERLGTGIIY 212 >gi|283780357|ref|YP_003371112.1| Protein-tyrosine phosphatase, low molecular weight [Pirellula staleyi DSM 6068] gi|283438810|gb|ADB17252.1| Protein-tyrosine phosphatase, low molecular weight [Pirellula staleyi DSM 6068] Length = 389 Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 68/287 (23%), Positives = 121/287 (42%), Gaps = 17/287 (5%) Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 Q++ + +S+ + +A + L G +A PTETVY A + NP A+ RL E++ A Sbjct: 4 QVIDVQNSDDPRDVVHRAVQALVEGRVVAFPTETVYVAAASALNPAAVGRLLELRGGSAD 63 Query: 58 NPLICHVSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVL-DLLSTTDIHPLSTANLKTA 115 PL + + P L + LA+ WPGP+TL L D + + L + K Sbjct: 64 IPLSIALRSTDDALDYVPTIPSLGMRLARRCWPGPMTLELADAHPDSVVQRLPPSVKKVI 123 Query: 116 C------FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 RVP ++++ PL I +A +G V+ ++ + + L+++ Sbjct: 124 SPLGNVRLRVPAHALLSEVLKLLAGPLVITAARPAGASDPITVEDVVQKA-ANHVDLVLN 182 Query: 169 GGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISV-ELEYCVDETS-TPQSPGML 226 G + G +++V V + ILRPG + L+R S + C T +P + +L Sbjct: 183 HGRCRFGQRASVVRVL-NSSLEILRPGVISEANLRRLSSWMAVMVCTGNTCRSPMAEALL 241 Query: 227 KSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTG 273 K A QV + A+ + + + + + G Sbjct: 242 KKRLADHLQVPIDALEDHGYMVMSAGVAAAPGGRSANEAVMVMRERG 288 >gi|269796626|ref|YP_003316081.1| translation factor SUA5 [Sanguibacter keddieii DSM 10542] gi|269098811|gb|ACZ23247.1| translation factor SUA5 [Sanguibacter keddieii DSM 10542] Length = 206 Score = 113 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 31/188 (16%), Positives = 63/188 (33%), Gaps = 4/188 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + E L + PT++ Y + T R+ I+ A + +D + Sbjct: 14 PRLVAQVTEMLRDDALVVYPTDSSYAFGCSLNSHTGADRIRRIRHLDAKHHFTLVCADFA 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + + +D + K PG T +L + KT R+P L Sbjct: 74 QLGQFVRLDNSAFRAIKSSTPGAYTFILPATKEVP-RRFAHEKKKTVGVRIPDNPVALAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PL + + + + + +++DGG +T+V+ Sbjct: 133 VRALGAPLLSSTLLLPDSETQPTDGWQIKEELDHVVDVVVDGGDCGT-EPTTVVDWSSGA 191 Query: 188 KVRILRPG 195 ++R G Sbjct: 192 P-EVVRVG 198 >gi|282918675|ref|ZP_06326412.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp. aureus C427] gi|282317809|gb|EFB48181.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp. aureus C427] Length = 213 Score = 113 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 46/199 (23%), Positives = 86/199 (43%), Gaps = 9/199 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS--V 76 L G P+ +PT+T Y L N I +++E KKR PL + K + Sbjct: 18 LQDGFPVIVPTDTNYNLCSLPNNDLCIDKIFEYKKRSKDKPLSLFIDKPEDWKLYGDNQN 77 Query: 77 DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLA 136 + L ++FWPGPL ++L ++ + ++ ++ C V ++ I +A Sbjct: 78 TEIVDKLVEIFWPGPLNIILKNKTSYNYMLNNSDSIAIGC--VQNKTMRRFISYINSAIA 135 Query: 137 IPSANRSG--QISITNVKHILSSSICKEIPLIIDG-GISKIGLESTIVNVQCEKKVRILR 193 I SAN SG + + + + + ++ + STI+ V + K+ +LR Sbjct: 136 ITSANISGTANDILITENEAIKH-MGENVRYMLRSQNKTNYKTSSTIIKVT-DNKIELLR 193 Query: 194 PGGLEIETLKRAISVELEY 212 G ++ E +K + + Y Sbjct: 194 EGDIKFEEIKERLGTGIIY 212 >gi|283957715|ref|ZP_06375168.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus A017934/97] gi|283791166|gb|EFC29981.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp. aureus A017934/97] Length = 213 Score = 113 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 46/199 (23%), Positives = 86/199 (43%), Gaps = 9/199 (4%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS--V 76 L G P+ +PT+T Y L N I +++E KKR L + K + Sbjct: 18 LQDGFPVIVPTDTNYNLCSLPNNDLCIDKIFEYKKRSKDKSLSLFIDKPEDWKLYGDNQN 77 Query: 77 DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLA 136 + L ++FWPGPL ++L ++ + ++ ++ C V ++ I P+A Sbjct: 78 TEIVDKLVEIFWPGPLNIILKNKTSYNYMLNNSDSIAIGC--VQNKTMRRFISYINSPIA 135 Query: 137 IPSANRSG--QISITNVKHILSSSICKEIPLIIDG-GISKIGLESTIVNVQCEKKVRILR 193 I SAN SG + + + + + ++ + STI+ V + K+ +LR Sbjct: 136 ITSANISGTANDILITENEAIKH-MGENVRYMLRSQNKTNYKTSSTIIKVT-DNKIELLR 193 Query: 194 PGGLEIETLKRAISVELEY 212 G ++ E +K + + Y Sbjct: 194 EGDIKFEEIKERLGTGIIY 212 >gi|42526970|ref|NP_972068.1| Sua5/YciO/YrdC/YwlC family protein [Treponema denticola ATCC 35405] gi|41817394|gb|AAS11979.1| Sua5/YciO/YrdC/YwlC family protein [Treponema denticola ATCC 35405] Length = 184 Score = 113 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 57/201 (28%), Positives = 92/201 (45%), Gaps = 21/201 (10%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGL-AVDSRNPTAIRRLYEIKKRPAMNP 59 M I+ D +L A L G I +PT+TVYG + I ++ + R A Sbjct: 1 MVILK-KDPKSLETAASVLKKGEIIIVPTDTVYGFSGIMPFTKEKIIKIKK---RGAEKS 56 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I + + K+ P+ L WP PL++++ T+ FR Sbjct: 57 FISLIEKPQDIYKYTD-TPVPEILL-NLWPAPLSIIVKDKE----------GRGTSAFRC 104 Query: 120 PCGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P + LI G P+ S N SG+ +++++ I+S ++ LI+DGG K GL S Sbjct: 105 PDDVWLRNLIGKTGFPIYSTSVNYSGEPVLSDIRDIISE-FEDKVSLIVDGGEQK-GLSS 162 Query: 179 TIVNVQCEKKVRILRPGGLEI 199 TIV++ +K+ I+R G L+I Sbjct: 163 TIVSLT-DKEPCIIRQGALKI 182 >gi|13358171|ref|NP_078455.1| hypothetical protein UU005m [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170762116|ref|YP_001752085.1| hypothetical protein UPA3_0005 [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171920287|ref|ZP_02931643.1| conserved hypothetical protein [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|183508513|ref|ZP_02958040.1| conserved hypothetical protein [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701710|ref|ZP_02971402.1| conserved hypothetical protein [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|168827693|gb|ACA32955.1| conserved hypothetical protein [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171902700|gb|EDT48989.1| conserved hypothetical protein [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|182675949|gb|EDT87854.1| conserved hypothetical protein [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186700976|gb|EDU19258.1| conserved hypothetical protein [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 184 Score = 112 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 57/208 (27%), Positives = 90/208 (43%), Gaps = 34/208 (16%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+I IT+ N + A L A + IPT+T+ GL ++N + +YEIK+R + Sbjct: 1 MKIYRITNLNVIYDA---LMANKCVLIPTDTIIGL--LAKNQD-V--IYEIKQRDRNKKI 52 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 I V+D ++ + LFWPG +T++ + +R+P Sbjct: 53 IRFVADYKLLG---DLTVEQKQFLDLFWPGSVTIIKNG----------------ISYRMP 93 Query: 121 C-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + KLI+ G PL SAN SG+ I N + LI +IG+ ST Sbjct: 94 NSPYILKLIQKLG-PLYCSSANISGEEPIKNHNEAIF-KFGANSKLIYVEAQQQIGVPST 151 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAIS 207 IV++ K +R G +E + I Sbjct: 152 IVDI---DKWEYIRRGA-NVEMVDMFIK 175 >gi|119503589|ref|ZP_01625672.1| hypothetical protein MGP2080_03580 [marine gamma proteobacterium HTCC2080] gi|119460651|gb|EAW41743.1| hypothetical protein MGP2080_03580 [marine gamma proteobacterium HTCC2080] Length = 185 Score = 112 bits (282), Expect = 6e-23, Method: Composition-based stats. Identities = 40/184 (21%), Positives = 70/184 (38%), Gaps = 10/184 (5%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + + ++ +A P E V+GL D + A+ +L +K RP LI + +M+ Sbjct: 8 MNEVVQQVEQEGVVACPAEAVWGLTCDPLSEDAVLQLLAMKHRPISKGLIIVAASSTMLG 67 Query: 72 KHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE- 129 +D + +L WPGP T ++ T RV L+ Sbjct: 68 PLLKPLDSAQRNELELSWPGPNTWLVPNRG--LYPDWITGESDEIAIRVTSAPALALLSY 125 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEI--PLIIDGGISKIGLESTIVNVQCEK 187 G P+ SAN +G + ++ + P ++D S STI V + Sbjct: 126 RLGRPVVSTSANPAGAQPARHSFQVVRYFGRGLVRAPGVVDLEAS----PSTIRRVGTGE 181 Query: 188 KVRI 191 +R Sbjct: 182 VLRA 185 >gi|325282693|ref|YP_004255234.1| SUA5/yciO/yrdC domain-containing protein [Deinococcus proteolyticus MRP] gi|324314502|gb|ADY25617.1| SUA5/yciO/yrdC domain protein [Deinococcus proteolyticus MRP] Length = 228 Score = 112 bits (282), Expect = 6e-23, Method: Composition-based stats. Identities = 46/184 (25%), Positives = 69/184 (37%), Gaps = 9/184 (4%) Query: 24 PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHL 83 +A PTETV+GL L K R + + A L L Sbjct: 37 LVAFPTETVWGLGAPPT-QEGWEALIRAKGRDPKQAFQVSCASPQLALAWAQHPDLLRPL 95 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANR 142 FWPGPLTLV+ + L+ RVP + L+ G L S N Sbjct: 96 T-AFWPGPLTLVVQARAGLP-EYLAPGGW--VGLRVPAHPAAQALLHGSGGRLLTSSLNL 151 Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202 SGQ + + + +++ DGG G ST++ V + +LR G L + + Sbjct: 152 SGQPVARSEAEARALGLAEQVLG--DGGQPPSGEASTVLRVSETG-LDVLRAGALRLADI 208 Query: 203 KRAI 206 + + Sbjct: 209 RACL 212 >gi|116072664|ref|ZP_01469930.1| hypothetical protein BL107_09136 [Synechococcus sp. BL107] gi|116064551|gb|EAU70311.1| hypothetical protein BL107_09136 [Synechococcus sp. BL107] Length = 202 Score = 112 bits (282), Expect = 7e-23, Method: Composition-based stats. Identities = 52/197 (26%), Positives = 79/197 (40%), Gaps = 10/197 (5%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 ++ L A + IPT+T+ GLAV +N ++ +K+RPA PLI + + + Sbjct: 11 SIASIARRLQASEAVIIPTDTLPGLAVLPQNAET---IWTLKQRPADKPLILMGATVDAL 67 Query: 71 KKHAS--VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127 + + LA WPG +TLVL + R+P C T+ L Sbjct: 68 LEGVDSRCHNDAKTLAAKHWPGAITLVLP--ARGPYVDYLNPGGSNIGCRIPACAVTQNL 125 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + G PLA SAN SGQ + T + L G ST++ + Sbjct: 126 LSFSG-PLATSSANPSGQSAATTAL-EAAEFFPDLAQLGPQPWPRHSGEASTVLIWRSVG 183 Query: 188 KVRILRPGGLEIETLKR 204 RI R G + E + Sbjct: 184 CWRIARHGAVMPEGINA 200 >gi|332295207|ref|YP_004437130.1| SUA5/yciO/yrdC domain protein [Thermodesulfobium narugense DSM 14796] gi|332178310|gb|AEE13999.1| SUA5/yciO/yrdC domain protein [Thermodesulfobium narugense DSM 14796] Length = 203 Score = 112 bits (281), Expect = 8e-23, Method: Composition-based stats. Identities = 44/201 (21%), Positives = 91/201 (45%), Gaps = 8/201 (3%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 ++ + + +PT+T++ L D+R+ R++++K+R V ++ + + Sbjct: 7 KRISDQIKNQKIGIVPTDTLFALTGDARSEEVASRIFDVKRRLPDKSFPVFVPSLNWLLE 66 Query: 73 HASVD----PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128 A+ + L L+ +FWPGPLT+V + + + A V K+ Sbjct: 67 KANFKYVDLEIFLRLSSIFWPGPLTIVSRVFFDFKLSEKVVLDNFLALRVVSHPVINKIF 126 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E P+ SAN SG+I+ + + ++ K I G + + ST+V + + Sbjct: 127 EDINFPIIGTSANISGKINPLS-QDEFDKTLLKGIDFFAQGELIYY-VPSTVVKL--DSN 182 Query: 189 VRILRPGGLEIETLKRAISVE 209 V +LR G ++ L++ +S + Sbjct: 183 VEVLREGVIKKGVLEKVLSRK 203 >gi|325474033|gb|EGC77221.1| Sua5/YciO/YrdC/YwlC family protein [Treponema denticola F0402] Length = 184 Score = 112 bits (281), Expect = 8e-23, Method: Composition-based stats. Identities = 57/201 (28%), Positives = 92/201 (45%), Gaps = 21/201 (10%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGL-AVDSRNPTAIRRLYEIKKRPAMNP 59 M I+ D +L A L G I +PT+TVYG + I ++ + R A Sbjct: 1 MVILK-EDPKSLETAASVLKKGEIIIVPTDTVYGFSGIMPFTKEKIIKIKK---RGAEKS 56 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I + + K+ P+ L WP PL++++ T+ FR Sbjct: 57 FISLIEKPQDIYKYTD-TPVPEILL-NLWPAPLSIIVRDKE----------GRGTSAFRC 104 Query: 120 PCGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P + LI G P+ S N SG+ +++++ I+S ++ LI+DGG K GL S Sbjct: 105 PDDVWLRNLIGLTGFPIYSTSVNYSGEPVLSDIRDIISE-FEDKVSLIVDGGEQK-GLSS 162 Query: 179 TIVNVQCEKKVRILRPGGLEI 199 TIV++ +K+ I+R G L+I Sbjct: 163 TIVSLT-DKEPCIIRQGALKI 182 >gi|113954257|ref|YP_729767.1| YrdC domain-containing protein [Synechococcus sp. CC9311] gi|113881608|gb|ABI46566.1| yrdC domain, putative [Synechococcus sp. CC9311] Length = 205 Score = 111 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 47/184 (25%), Positives = 73/184 (39%), Gaps = 10/184 (5%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 L AG +PT+T+ L + P +++ +KKRP PLI +D+ + H S Sbjct: 16 AHLRAGGAALLPTDTLPAL---ASMPEQAAQIWRLKKRPQDKPLILMGADVDALLCHVSP 72 Query: 77 DPLSL--HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGH 133 + LA+ WPG LTLVL T R+P C L+ G Sbjct: 73 VARADASALAQRHWPGALTLVLPAFG--PCAETLNPGCATLGLRIPACKPMLDLLRCSG- 129 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 PLA SAN SG+ + + + I + S+++ + + LR Sbjct: 130 PLATTSANLSGEPASRTETEAAGAFPDLPLLAPI-PWPAPSCQASSVIAWRGPQDWHCLR 188 Query: 194 PGGL 197 G + Sbjct: 189 RGAV 192 >gi|16330823|ref|NP_441551.1| hypothetical protein sll1866 [Synechocystis sp. PCC 6803] gi|1653316|dbj|BAA18231.1| sll1866 [Synechocystis sp. PCC 6803] Length = 199 Score = 111 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 51/204 (25%), Positives = 84/204 (41%), Gaps = 16/204 (7%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 ++ S+ + A ++ PT+TV LAV N +YE+K+R A PLI + Sbjct: 4 VSQSDLVSAAIAH----RVVSFPTDTVPALAVRPENS---ALIYELKQREASKPLILMAA 56 Query: 66 DISMVKKHASVDPLSLHL----AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 + + + + L +WPG LTLVL ++ +T R+P Sbjct: 57 TVEQILPYLAGSQREKQLWQAVMAEYWPGALTLVLPCSEKLP-PEINPRQDQTIGVRIPR 115 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISIT---NVKHILSSSICKEIPLIIDGGISKIGLES 178 I PLA SAN SGQ + ++ + C + + G GL S Sbjct: 116 QAISLEILLQTGPLATTSANLSGQPPLEKLADIAETFPAVHCLDCLSLEQQGPIGKGLPS 175 Query: 179 TIVNVQCEKKV-RILRPGGLEIET 201 T+ K++ +ILR G + ++ Sbjct: 176 TVAQWDGAKEIFQILRQGEVVLQD 199 >gi|303279452|ref|XP_003059019.1| predicted protein [Micromonas pusilla CCMP1545] gi|226460179|gb|EEH57474.1| predicted protein [Micromonas pusilla CCMP1545] Length = 245 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 40/219 (18%), Positives = 71/219 (32%), Gaps = 24/219 (10%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 +D L + + + G IPT+T Y D + A++ LY +K P+ V Sbjct: 17 DASDDWRLDEIADVIRGGGVGIIPTDTKYAFVADLESRDAVQTLYRLKDAGVGKPMSVLV 76 Query: 65 SDISMVKKHASVDP--------LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTAN----- 111 S + + P LA+ PGP T +L L + Sbjct: 77 RGFSDIDAYTQGFPDNVVAGRTQPFKLARQCLPGPYTFILQAGKAMPKICLQDPSTKSKS 136 Query: 112 ---LKTACFRVP-CGFTKKLIETYGHPLAIPSAN---RSGQISITNVKHILSSSI--CKE 162 KT R + L+ PL + I ++ Sbjct: 137 CKARKTVGVRFSADPVCRALLSRLDRPLLASTVPCEVDGDGIEYAQDPAVMCDDYESEGL 196 Query: 163 IPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIET 201 + +ID G+ + ST++++ ++LR G + Sbjct: 197 LAFVIDCGV-RENPPSTVIDLSG-GAAKLLRRGAGDASA 233 >gi|307152837|ref|YP_003888221.1| SUA5/yciO/yrdC domain-containing protein [Cyanothece sp. PCC 7822] gi|306983065|gb|ADN14946.1| SUA5/yciO/yrdC domain protein [Cyanothece sp. PCC 7822] Length = 213 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 45/189 (23%), Positives = 82/189 (43%), Gaps = 6/189 (3%) Query: 18 FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77 L++G + +PTE Y + + P AIR++ ++K+ A PL ++ V++ V Sbjct: 20 ILESGELVIVPTEVSYIIVAHAFKPRAIRKIAQLKRWNAPQPL-VLLTRREKVEEFGVVS 78 Query: 78 PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAI 137 S L F P P+TL++ +T I TA P F L+ P+ Sbjct: 79 AASQKLINHF-PYPITLIIPKKNT--IPDTITAQHSALFISCPDEFIYNLVAQIPFPMVC 135 Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197 +A S + + + ++PLI+DGG K + T+++ IL G + Sbjct: 136 TTAGFSDEYKARKYRTAI-ELFDGQVPLIVDGGDCKYDSKGTLIDCTL-PTPTILNFGTV 193 Query: 198 EIETLKRAI 206 ++ L+ + Sbjct: 194 SVDDLRSIL 202 >gi|330836515|ref|YP_004411156.1| SUA5/yciO/yrdC domain-containing protein [Spirochaeta coccoides DSM 17374] gi|329748418|gb|AEC01774.1| SUA5/yciO/yrdC domain protein [Spirochaeta coccoides DSM 17374] Length = 194 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 56/208 (26%), Positives = 90/208 (43%), Gaps = 24/208 (11%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 ++S D + + L A + +P +T+YGL +R P L EIK R A + Sbjct: 6 VISRQDERSAEVVVQCLLADHAVILPCDTIYGL--SARVPQGENLLREIKGRSADKSFLV 63 Query: 63 HVSDISMVKKH--ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 + + M + + P + WP PLT +++ T + T RVP Sbjct: 64 L-ATLEMARSLSGGHLPPG----LEEIWPAPLTAIVN-----------TQDGGTIGIRVP 107 Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSS-ICKEIPLIIDGGIS-KIGLE 177 F +K++E G P+ S N SG+ ++ + I S + + I L + G S + Sbjct: 108 DDVFIQKILEMVGTPIYSTSVNVSGEKAMLSFDEIFSHYGMDERIALFVIGSSSVGTTMA 167 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRA 205 STIV+ + RILR G + TL R Sbjct: 168 STIVDCTV-RPYRILRQGAYDATTLIRE 194 >gi|226938986|ref|YP_002794057.1| SUA5/YciO/YrdC family protein [Laribacter hongkongensis HLHK9] gi|322967314|sp|C1D9T5|RIMN_LARHH RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|226713910|gb|ACO73048.1| probable SUA5/YciO/YrdC family protein [Laribacter hongkongensis HLHK9] Length = 185 Score = 110 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 36/171 (21%), Positives = 68/171 (39%), Gaps = 7/171 (4%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS- 80 G +A TE+ +GL N +R + +K RP +I + +++ + Sbjct: 20 GGVLAYATESCFGLGCLPGNARGLRTILRLKGRPNHKGMIVVGRRFADLRRLVRPVDAAG 79 Query: 81 -LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPS 139 L WPGP T +L + + PL +T RV ++ PL S Sbjct: 80 QARLMSR-WPGPTTFLLP--ADRRVLPLLRGRHRTLAVRVSAHHGVAMLTRDLGPLVSTS 136 Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 AN +G++S+ N + + +++ G + S I++ + +R Sbjct: 137 ANFAGKVSLKNAAACRRTF--GQEVMVLPGRTGRARRPSAIIDFASGRVLR 185 >gi|241667468|ref|ZP_04755046.1| putative SUA5/YciO/YrdC family protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876015|ref|ZP_05248725.1| Sua5/YciO/YrdC family protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842036|gb|EET20450.1| Sua5/YciO/YrdC family protein [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 180 Score = 110 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 69/186 (37%), Gaps = 12/186 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + L K + +++PT+TVYGL+ + + A+ ++ +KKR + I + Sbjct: 3 TKDLNKIISEITNDQVVSLPTDTVYGLSCNI-SEHAVEKIINLKKRDSSKGFIIISHNYK 61 Query: 69 MVKKHASVDPLSLHLAKLFWP---GPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFT 124 + K+ LS K P T ++ + T T R V Sbjct: 62 HLLKYVDTTKLSEEQIKKICTVQEQPTTWIVPGKVSIQ---WLTGGKPTIAVRLVTTEII 118 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + + SAN SG+ I N H ++ I++ + K S I+++ Sbjct: 119 TDICSKMDDAIISTSANISGRDFI-NDPHSINEIFNS--IYILETEV-KSSQPSRIIDII 174 Query: 185 CEKKVR 190 + R Sbjct: 175 TGDRYR 180 >gi|318056879|ref|ZP_07975602.1| translation factor SUA5 [Streptomyces sp. SA3_actG] gi|318076682|ref|ZP_07984014.1| translation factor SUA5 [Streptomyces sp. SA3_actF] Length = 217 Score = 110 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 50/212 (23%), Positives = 88/212 (41%), Gaps = 11/212 (5%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 M + + L A + L G +A+PT Y L + + A R ++ +K+RP PL+ Sbjct: 1 MDVLAPDQLPLAAQLLRTGRLVAMPTPRWYMLCARATDFLATRAIFHVKQRPETKPLLLL 60 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 + + + + + L + WPG L L L + P++ A P G Sbjct: 61 LDPTTTIDALFDLSEDARLLTEHLWPGDLALRLPWKPGAE--PIAAAGSPAL-VGCPDGI 117 Query: 124 TKKLIETYGHPLAI-------PSANRSGQISITNVKHILSSSICKE-IPLIIDGGISKIG 175 +LI T G PLA P+A + ++T + K I ++DGGI G Sbjct: 118 LGRLISTVGEPLAAAVCSISTPAAGAADHPALTVAQVAAFDRRAKAGIAAVVDGGICPHG 177 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAIS 207 T+V+ + + R G + ++ A++ Sbjct: 178 RHMTVVDCPVDATAHVHREGTVHARAVEAALT 209 >gi|171920600|ref|ZP_02931851.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|188524207|ref|ZP_03004268.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195867355|ref|ZP_03079359.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273280|ref|ZP_03205816.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209554273|ref|YP_002284418.1| Sua5/YciO/YrdC/YwlC family protein [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225550766|ref|ZP_03771715.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|171903310|gb|EDT49599.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|195659977|gb|EDX53357.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660831|gb|EDX54084.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198249800|gb|EDY74580.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209541774|gb|ACI60003.1| Sua5/YciO/YrdC/YwlC family protein [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225379920|gb|EEH02282.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 186 Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 60/213 (28%), Positives = 95/213 (44%), Gaps = 35/213 (16%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+I IT+ NA+ A L A + IPT+T+ GL ++N + +YEIK+R + Sbjct: 1 MKIYRITNLNAIYDA---LVANKCVLIPTDTIIGL--LAKNQD-V--IYEIKRRDRNKKI 52 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 + V+D ++ + LFWPG +T++ + +R+P Sbjct: 53 VRFVADYKLLG---DLTVEQEQFLDLFWPGSVTVIKNG----------------VSYRMP 93 Query: 121 C-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + KLI+ G PL SAN SG+ + N + LI +IG+ ST Sbjct: 94 NSPYILKLIQKLG-PLYCSSANISGEEPVKNHNEAIF-KFGANSKLIYVEAQQQIGVPST 151 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEY 212 IV++ K +R G IE + I EL+Y Sbjct: 152 IVDI---DKWEYVRRGA-NIEMVDMFIK-ELKY 179 >gi|167626887|ref|YP_001677387.1| SUA5/YciO/YrdC family protein [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167596888|gb|ABZ86886.1| putative SUA5/YciO/YrdC family protein [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 180 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 69/186 (37%), Gaps = 12/186 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + L K + +++PT+TVYGL+ + + A+ ++ +KKR + I + Sbjct: 3 TKDLNKIISEITNDQVVSLPTDTVYGLSCNI-SEHAVEKIINLKKRDSSKGFIIISHNYK 61 Query: 69 MVKKHASVDPLSLHLAKLFWP---GPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFT 124 + K+ LS K P T ++ + T T R V Sbjct: 62 HLLKYVDTTKLSEEQIKKICTVQEQPTTWIVPGKVSIQ---WLTGGKPTIAVRLVTTEII 118 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + + SAN SG+ I N H ++ I++ + K S I+++ Sbjct: 119 TSICSKMDDAIISTSANISGRDFI-NDPHSINEIFNS--IYILETEV-KSSQPSRIIDII 174 Query: 185 CEKKVR 190 + R Sbjct: 175 TGDRYR 180 >gi|185178792|ref|ZP_02964588.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024454|ref|ZP_02997105.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518436|ref|ZP_03003925.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|225551267|ref|ZP_03772213.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|184209412|gb|EDU06455.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188018748|gb|EDU56788.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188998149|gb|EDU67246.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|225379082|gb|EEH01447.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 8 str. ATCC 27618] Length = 186 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 60/213 (28%), Positives = 94/213 (44%), Gaps = 35/213 (16%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+I IT+ NA+ A L A + IPT+T+ GL ++N + +YEIK+R + Sbjct: 1 MKIYRITNLNAIYDA---LVANKCVLIPTDTIIGL--LAKNQD-V--IYEIKRRDRNKKI 52 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 + V+D ++ + LFWPG +T++ + +R+P Sbjct: 53 VRFVADYKLLG---DLTVEQEQFLDLFWPGSVTVIKNG----------------VSYRMP 93 Query: 121 C-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 KLI+ G PL SAN SG+ + N + LI +IG+ ST Sbjct: 94 NSPHILKLIQKLG-PLYCSSANISGEEPVKNHNEAIF-KFGANSKLIYVEAQQQIGVPST 151 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEY 212 IV++ K +R G IE + I EL+Y Sbjct: 152 IVDI---DKWEYVRRGA-NIEMVDMFIK-ELKY 179 >gi|254430370|ref|ZP_05044073.1| hypothetical protein CPCC7001_260 [Cyanobium sp. PCC 7001] gi|197624823|gb|EDY37382.1| hypothetical protein CPCC7001_260 [Cyanobium sp. PCC 7001] Length = 202 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 48/187 (25%), Positives = 77/187 (41%), Gaps = 10/187 (5%) Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 + E L G +PT+T+ LA + +++ +K RPA PLI +D+ + Sbjct: 16 QLAERLRGGEAALLPTDTLPALAACPDHAD---QIWTLKSRPAEKPLILMGADLEQLLPL 72 Query: 74 --ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130 LHL WPG LTLVL ++ + + R+P C + L+ Sbjct: 73 LGGPWRQEWLHLGHQGWPGALTLVLP--ASGPVAAALNPGRGSLGLRIPACEQARALLRL 130 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 G PLA SAN SG+ + T + + L G+ ST++ + Sbjct: 131 SG-PLATTSANPSGRPAATTAA-EAGAYFPRLPLLGPLPWPGAAGVASTVLAWSASGTWQ 188 Query: 191 ILRPGGL 197 +LR G + Sbjct: 189 VLRAGAV 195 >gi|56752239|ref|YP_172940.1| hypothetical protein syc2230_c [Synechococcus elongatus PCC 6301] gi|56687198|dbj|BAD80420.1| hypothetical protein [Synechococcus elongatus PCC 6301] Length = 202 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 47/174 (27%), Positives = 76/174 (43%), Gaps = 11/174 (6%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 +L AG I+ PT+T+ LAV ++Y +K+RP+ PLI + + + Sbjct: 5 SLAAVITAAQAGQVISFPTDTLPALAVQPDQA---AQIYRLKQRPSEKPLILMAATAAEL 61 Query: 71 KKHASVDPLSL----HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125 A P +A +WPG LTLVL + + + +P C + Sbjct: 62 WPFAQGSPEDQAQWNAIANQYWPGALTLVLPASDRLPAA-ANPLDRSSIGLHIPACALAR 120 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 +++ G PLA SANRSG+ ++ N +++ + L D GL ST Sbjct: 121 QILAETG-PLATTSANRSGEPALLN-PDAIAAEFPEVTVLAEDPWPDPSGLAST 172 >gi|99034957|ref|ZP_01314762.1| hypothetical protein Wendoof_01000418 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 92 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 33/91 (36%), Positives = 48/91 (52%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + K + L + PTETVY LA ++ + +I ++Y+IKKR PL VSDI + Sbjct: 2 VSKIINAIQNNLLVCFPTETVYALACNALDNESIGKIYQIKKRSQNKPLSIFVSDIYNLT 61 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTT 102 K A V + L F PGP+T +L L + Sbjct: 62 KIAKVKERYIDLINHFSPGPITYILPLKNNN 92 >gi|71066688|ref|YP_265415.1| hypothetical protein Psyc_2134 [Psychrobacter arcticus 273-4] gi|123647618|sp|Q4FPS7|RIMN_PSYA2 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|71039673|gb|AAZ19981.1| conserved hypothetical protein [Psychrobacter arcticus 273-4] Length = 214 Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats. Identities = 40/214 (18%), Positives = 72/214 (33%), Gaps = 24/214 (11%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M + + ++++ +A +L G +A PTE+V+G+ D N A+ +L IK+RP + Sbjct: 1 MSLSTPLITDSVIQAAHWLKKGQLLAYPTESVWGIGCDPFNQQAVMQLLTIKQRPIEKGM 60 Query: 61 ICHVSDISMVKKHAS-VDPLSLHLAKLFW---------PGPLTLVLDLLSTT--DIHPLS 108 I S + +D + W T +L + I Sbjct: 61 IVVTDSPSRITVLLEGLDAVERQTVLDSWQTDSINGTAKQAHTWLLPISQKLLITIPSWI 120 Query: 109 TANLKTACFRV-PCGFTKKLIETYG------HPLAIPSANRSGQISITNVKHILSSSI-- 159 T + RV K+L + S N +GQ ++ + Sbjct: 121 TGAHDSVAVRVIDHPLVKQLCAQMVSASNPYGFVVSTSCNPAGQPPALSLSEAQRYFLRH 180 Query: 160 ---CKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 E + G L S I + + +R Sbjct: 181 HANSNECVGYLKGETLGYQLPSQIGDALTGQIIR 214 >gi|148654173|ref|YP_001281266.1| SUA5/yciO/yrdC domain-containing protein [Psychrobacter sp. PRwf-1] gi|148573257|gb|ABQ95316.1| SUA5/yciO/yrdC, N-terminal domain [Psychrobacter sp. PRwf-1] Length = 262 Score = 109 bits (273), Expect = 7e-22, Method: Composition-based stats. Identities = 36/235 (15%), Positives = 67/235 (28%), Gaps = 59/235 (25%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 +A ++L G +A PTE+V+G+ D+ N A+ ++ IK RP+ +I I ++ Sbjct: 30 EQAAQWLQQGKLLAYPTESVWGIGCDAYNQQAVEQILAIKNRPSEKGMIVVTDSIERIRP 89 Query: 73 -------------HASVDPLSLHLAKLFWPGPLTLVLDLL-------------------- 99 AS + T +L L Sbjct: 90 LLQQLPQSRQQQIIASWSTRASEENAAHTQQAHTWLLPLKTAEFSATTEADHEDTNTQDI 149 Query: 100 -----------------STTDIHPLSTANLKTACFRV-PCGFTKKLIETYG------HPL 135 + + T + RV +L + + Sbjct: 150 GAHKANASKAHDPHQPGNEALVPYWITGKHDSIAVRVIAHPLIAQLCQQMVSSANPYGLV 209 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 S N SG + + + + + G L S I + + +R Sbjct: 210 VSTSCNPSGDSPAKSFEQAYA--YFGQDIAYLQGETLGYVLPSQISDASSGQVIR 262 >gi|323455538|gb|EGB11406.1| hypothetical protein AURANDRAFT_61842 [Aureococcus anophagefferens] Length = 267 Score = 109 bits (273), Expect = 7e-22, Method: Composition-based stats. Identities = 39/187 (20%), Positives = 66/187 (35%), Gaps = 11/187 (5%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSDISMVKKHA-SV 76 L+ G IPT+T Y + A++RL +K PL +D+ + ++ Sbjct: 76 LNRGGVGVIPTDTSYSFVARVDSKAAVQRLLALKGDENRKKPLSLLCADLGTIDEYTRYT 135 Query: 77 DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA----NLKTACFRVP-CGFTKKLIETY 131 + L K PGP T++L T R+P ++ Sbjct: 136 SKRTFKLLKAALPGPYTMILPASEALPRMIYKGGARRWKRDTVGVRIPDDPVCAHILSQV 195 Query: 132 GHPLAIPSANRS---GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 PL S S Q+ + + C + ++D G I ST+ ++ + Sbjct: 196 DGPLFCSSVPTSDDGDQLVCRLPLEGDAQTWCALVDFVVDAGARPI-EGSTVYDLASDDA 254 Query: 189 VRILRPG 195 ILR G Sbjct: 255 PAILREG 261 >gi|260804891|ref|XP_002597321.1| hypothetical protein BRAFLDRAFT_203325 [Branchiostoma floridae] gi|229282584|gb|EEN53333.1| hypothetical protein BRAFLDRAFT_203325 [Branchiostoma floridae] Length = 382 Score = 109 bits (273), Expect = 7e-22, Method: Composition-based stats. Identities = 42/166 (25%), Positives = 73/166 (43%), Gaps = 9/166 (5%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +N +++ E + G +PT+TVY L P A+ R Y KK+ P+ +S +S Sbjct: 209 ANGVKQISELMKGGGICGMPTDTVYVLVAACNRPAAVERAYRTKKQAEERPMSIWISQLS 268 Query: 69 MVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANL-----KTACFRVP-C 121 ++ PL K WP ++LV+ D L + ++ R+P C Sbjct: 269 QLEPAREEFGPLLWDFMKEVWPSSISLVIKRGPWLDRFGLGDSARFIGTPESIAIRIPDC 328 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 LI+ G P+A+ SAN SG+ T+ +L + + + + Sbjct: 329 TVATHLIDLVG-PIAVTSANPSGEADTTHHSQVL-AKLGDNVSATL 372 >gi|260804903|ref|XP_002597327.1| hypothetical protein BRAFLDRAFT_203412 [Branchiostoma floridae] gi|229282590|gb|EEN53339.1| hypothetical protein BRAFLDRAFT_203412 [Branchiostoma floridae] Length = 372 Score = 108 bits (272), Expect = 8e-22, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 71/164 (43%), Gaps = 11/164 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +N +++ E + AG +PT+TVY L P A+ R Y KK+ P+ +S +S Sbjct: 205 ANGVKQIAELMKAGGICGMPTDTVYVLVAACNRPAAVERAYRTKKQAEERPMSIWISQLS 264 Query: 69 MVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANL-------KTACFRVP 120 ++ PL K WP ++L L + + ++ R+P Sbjct: 265 QLEPAREEFGPLLWDFMKEVWPSSISLYYVHLPGPWLDRFGLGDSAHYIGTPESIAIRIP 324 Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEI 163 C LI+ G P+A+ SAN SG+ T+ +L + + + Sbjct: 325 DCTVATHLIDLVG-PIAVTSANPSGEADTTHHSQVL-AKLGDNV 366 >gi|78185423|ref|YP_377858.1| hypothetical protein Syncc9902_1857 [Synechococcus sp. CC9902] gi|78169717|gb|ABB26814.1| conserved hypothetical protein [Synechococcus sp. CC9902] Length = 202 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 52/196 (26%), Positives = 77/196 (39%), Gaps = 10/196 (5%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 L A + IPT+T+ GLAV +N ++ +K+RPA PLI + + + + Sbjct: 13 AAVARRLQASEAVIIPTDTLPGLAVLPQNANT---IWTLKQRPADKPLILMGATVEALLE 69 Query: 73 HAS--VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129 + +A WPG +TLVL R+P C T+ L+ Sbjct: 70 GVDSCCHDDAKTMATKHWPGAITLVLPARGIY--VDYLNPGGSNIGCRIPACAITQNLLS 127 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189 G PLA SAN SGQ + T + L G ST++ + Sbjct: 128 ISG-PLATSSANPSGQSAATTAF-EAAELFPDLAQLGPQPWPRHSGQASTVLIWRSVGCW 185 Query: 190 RILRPGGLEIETLKRA 205 RI R G + E + A Sbjct: 186 RIARRGAVMPEGINAA 201 >gi|313229165|emb|CBY23750.1| unnamed protein product [Oikopleura dioica] Length = 243 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 50/232 (21%), Positives = 88/232 (37%), Gaps = 49/232 (21%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 +L A + L IA PT+T++G+A + + RR+YEIK R P+ S I + Sbjct: 7 SLENAKKQLSKDGVIAFPTDTLFGIAAQISSESGYRRIYEIKGRSEAKPVAVCFSTIPQI 66 Query: 71 KKH---------------ASVDPLS-------------------LHLAKLFWPGPLTLVL 96 ++ + P++ L PGP+TLV+ Sbjct: 67 LQYLPALDRFRELLMHGRSEAKPVAVCFSTIPQILQYLPALDRFRELLSRLLPGPVTLVV 126 Query: 97 DLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILS 156 H N +T R+P +L+ PL + SAN+SG S Sbjct: 127 PRGKFIPEH--VNPNCETIGIRIPDNTISRLLSQA-EPLCLTSANKSGAKSAITSND--F 181 Query: 157 SSICKEIPLIIDGGISKIGLE-------STIVNVQCEKKVRILRPGGLEIET 201 + + + I++ +++G+ ST+V + + K +R G + Sbjct: 182 ADLHPLLDAIVE---TELGIPTSMSRAGSTVVELNLQAKTYFIRRKGCAFDA 230 >gi|126640869|ref|YP_001083853.1| hypothetical protein A1S_0813 [Acinetobacter baumannii ATCC 17978] Length = 157 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 37/160 (23%), Positives = 65/160 (40%), Gaps = 4/160 (2%) Query: 45 IRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI 104 + R+ +I+ + D+S + +A VD + L K P T +L S Sbjct: 1 MERIAQIRGLGPKHQYAIMCCDLSDIATYAKVDNATYRLLKANTPAITTFILPATSEVP- 59 Query: 105 HPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEI 163 L KT R+P + L++ G PL + GQ + + + + + K I Sbjct: 60 RRLMHPKKKTIGLRIPSNPICQALLKELGEPLLTSTLILPGQEDPLDDPYDIENQLAKRI 119 Query: 164 PLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203 + IDGG + S IV++ E I+R G ++ + Sbjct: 120 DVFIDGGFGTLTTTS-IVDLSGEHP-EIIRRGVGDVSAFE 157 >gi|87124889|ref|ZP_01080736.1| hypothetical protein RS9917_02768 [Synechococcus sp. RS9917] gi|86167209|gb|EAQ68469.1| hypothetical protein RS9917_02768 [Synechococcus sp. RS9917] Length = 213 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 57/200 (28%), Positives = 86/200 (43%), Gaps = 13/200 (6%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 TDSNAL L G +PT+T+ L + P R+++++K+RP PLI + Sbjct: 16 ATDSNAL---LHQLRMGGAAMLPTDTLPAL---ASLPEHARQIWQLKRRPLRKPLILMGA 69 Query: 66 DISMVKKHA--SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CG 122 + + H V + LA WPG LTLVL T H T R+P C Sbjct: 70 EPESLLTHVAPEVRGEAAALASAHWPGALTLVLPASGPTVQH--LHPGAATLGLRIPDCA 127 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 T+ L+ G PLA S NRSG+ + + + + L G ST++ Sbjct: 128 PTRHLLSLSG-PLATTSINRSGEPAAQSAREA-TQCFPSLPLLGPLPWPEPSGQASTVLA 185 Query: 183 VQCEKKVRILRPGGLEIETL 202 + ++LR G + + L Sbjct: 186 WLGPGRWQLLRQGAVMPKGL 205 >gi|313885993|ref|ZP_07819731.1| Sua5/YciO/YrdC/YwlC family protein [Porphyromonas asaccharolytica PR426713P-I] gi|332299351|ref|YP_004441272.1| Sua5/YciO/YrdC/YwlC family protein [Porphyromonas asaccharolytica DSM 20707] gi|312924523|gb|EFR35294.1| Sua5/YciO/YrdC/YwlC family protein [Porphyromonas asaccharolytica PR426713P-I] gi|332176414|gb|AEE12104.1| Sua5/YciO/YrdC/YwlC family protein [Porphyromonas asaccharolytica DSM 20707] Length = 200 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 76/195 (38%), Gaps = 10/195 (5%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM-NPLICHVSD 66 D +R+ + L++G I PT Y L + A+ ++ +IK + + L D Sbjct: 11 DYAVVREVVQCLESGGVIIYPTGVGYALGCSALKKRAVEQVCQIKGVDSKRHTLAIMCQD 70 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTK 125 + V ++A + + L K P T +L +T K + T+ Sbjct: 71 LGEVAQYAKLGNETFALMKSGKYEPATYILPPTTTLP---TPFRQRKEVGVQLCKHPVTR 127 Query: 126 KLIETYGHPLAI---PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 ++E PL P ++ ++ ++ LIIDGG++ G I++ Sbjct: 128 IILEELEAPLLTGSLPDLPEGYDMNYLTDPELIEEYYGHQVDLIIDGGVAPGGHG-AIID 186 Query: 183 VQCEKKVRILRPGGL 197 E ++LR G + Sbjct: 187 CTGETP-QLLREGTI 200 >gi|218512322|ref|ZP_03509162.1| probable translation factor protein [Rhizobium etli 8C-3] Length = 91 Score = 107 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 54/88 (61%), Positives = 63/88 (71%) Query: 236 VRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295 VRL A V P EALI FG ++ +A I L+LS G L EAA NLF+YMK AD SG S Sbjct: 4 VRLNASAVEPGEALIAFGGAAVEGARDARIVLDLSPRGDLAEAAANLFDYMKRADASGVS 63 Query: 296 SIAFSSIPNHGLGIAINNRLERAAAPRN 323 SIAFS IP+ GLG AIN+RL+RAAAPR+ Sbjct: 64 SIAFSPIPDDGLGEAINDRLQRAAAPRD 91 >gi|328675325|gb|AEB28000.1| Sua5/YciO/YrdC family protein [Francisella cf. novicida 3523] Length = 180 Score = 106 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 70/186 (37%), Gaps = 12/186 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + L K + ++IPT+TVYGL+ + + A+ ++ +KKR + I + Sbjct: 3 TKDLDKIISEIIKDNVVSIPTDTVYGLSCNI-SKDAVAKVINLKKRDSSKGFIIISHNYE 61 Query: 69 MVKKHASVDPLSLHLAKLFWPG---PLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFT 124 + K+A LS P T ++ T T R V Sbjct: 62 HLLKYADTTKLSNEQIDKISSKQAQPTTWIVPGKKDIQ---WLTGGKTTIAIRLVTNEIV 118 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + E + SAN SG+ I N K I + +++ + + S I+++ Sbjct: 119 TYICENINDAIISTSANISGEDFINNAKSISKTFNN---IYVLETEV-RSSQPSRIIDII 174 Query: 185 CEKKVR 190 ++ R Sbjct: 175 SGQQYR 180 >gi|195953581|ref|YP_002121871.1| Sua5/YciO/YrdC/YwlC family protein [Hydrogenobaculum sp. Y04AAS1] gi|195933193|gb|ACG57893.1| Sua5/YciO/YrdC/YwlC family protein [Hydrogenobaculum sp. Y04AAS1] Length = 192 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 55/207 (26%), Positives = 98/207 (47%), Gaps = 21/207 (10%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 + I + + A L+ +PI PT+T+YG+ N A+ LY+I +RP+ P Sbjct: 3 FDVKKINEEGVIDSAVYILNKNMPICSPTDTIYGVLA-LDNEEALELLYKI-RRPSKKPF 60 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 + + DI+ ++ + F P V +L + + A K+ FR+P Sbjct: 61 LRLLPDIAFLEMYG------------FKPNDK--VFELSKLEGVSIIIKAQDKSLGFRIP 106 Query: 121 C-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 GF K+L++ P+ PS N+ G+ +++ +S EI L ID G + ST Sbjct: 107 QKGFIKELLDKLQKPILAPSCNKEGEPPAKSIEEAIS-YFKDEISLYIDSGFIES-PPST 164 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAI 206 IV ++ + ++I+R G + I+ +K I Sbjct: 165 IVEIE-QNTIKIVREG-MSIDKVKELI 189 >gi|326563106|gb|EGE13379.1| YrdC-like protein [Moraxella catarrhalis 12P80B1] Length = 204 Score = 105 bits (264), Expect = 7e-21, Method: Composition-based stats. Identities = 40/198 (20%), Positives = 72/198 (36%), Gaps = 19/198 (9%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++ L +L AG +A P+E+V+GL D+ N AI ++ +K R LI Sbjct: 10 ADELDLVANYLQAGGVLAYPSESVWGLGCDAFNTDAINQIINLKHRDIGKGLIVLTDAAE 69 Query: 69 MVKKHASVDPLSLHL--AKLF-------WPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 +K V + L + F + LT ++ + S+ + + + T R+ Sbjct: 70 RLKSLIDVSHETSLLDYMQNFSDEFTHEYSRALTWLIPIQSSA-LPSVLIGSYDTLAVRI 128 Query: 120 PCGFTKK-LIETYGHP------LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172 K L P L S N S N+ + +I + G+ Sbjct: 129 TIHPVLKDLCHALISPTNPYGFLVSTSCNPSKSTPAKNLTQAMG-YFGDQIAYLDTDGLG 187 Query: 173 KIGLESTIVNVQCEKKVR 190 + S I ++ +R Sbjct: 188 FV-QPSCIKDLLAGHILR 204 >gi|147841978|emb|CAN72004.1| hypothetical protein VITISV_012595 [Vitis vinifera] Length = 329 Score = 105 bits (264), Expect = 7e-21, Method: Composition-based stats. Identities = 45/216 (20%), Positives = 78/216 (36%), Gaps = 30/216 (13%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR---------- 54 S TDS L + L G IPT+TVY + R+ +AI RL + + Sbjct: 100 SGTDSWKLEPVADLLKEGAVGVIPTDTVYAIVCHLRSHSAIERLRRL-QLFPFMFSDVSV 158 Query: 55 PAMNPLICHVSDISMVKKHASVDP--------LSLHLAKLFWPGPLTLVLDLLSTTDIHP 106 M PL + + + + P K PGP T + Sbjct: 159 SLMQPLSILCRSLRDIDTYTTGFPCGIGQGQTNIFRAVKHCLPGPCTRYGTTTAKY---- 214 Query: 107 LSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKE-IP 164 A+ K R+P K +++ PL S + ++ E + Sbjct: 215 ---ASRKNVGVRMPDDAICKAILQMMDAPLIATSVKSPKENEWMLDPITIADVYGPEGLD 271 Query: 165 LIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200 ++DGG+ ++ ST+V++ + +I+R G + Sbjct: 272 FVVDGGV-RVADPSTVVDMTG-RTPKIIRQGKGPKQ 305 >gi|82697921|gb|ABB88998.1| hypothetical protein [uncultured crenarchaeote] Length = 167 Score = 105 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 63/161 (39%), Gaps = 23/161 (14%) Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISV---------ELEYCVDETSTPQSPGMLKSHYA 231 +++ V +LRPGGL +E ++ I + + + +SPGM HY+ Sbjct: 2 IDMTSPVPV-LLRPGGLPLERIREVIDKISIHSSILNPKKDHLKSGNGYKSPGMKYRHYS 60 Query: 232 PRSQVRLR------------AIHVNPREALIRFGNVPIKNIEN-AIISLNLSKTGKLKEA 278 P++ + L + R + + K+I N I + + Sbjct: 61 PKADLILVKGTKIKVRNKIVELARRMRNEQSKSVCIMTKSINNNYIADIVWFVGNDFETI 120 Query: 279 AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319 + LF + D+ I + LG+A+ +RL+RAA Sbjct: 121 SRGLFEIFRYVDNHNIDVIIAEEMDCVDLGLAVMDRLKRAA 161 >gi|159462480|ref|XP_001689470.1| translation factor [Chlamydomonas reinhardtii] gi|158283458|gb|EDP09208.1| translation factor [Chlamydomonas reinhardtii] Length = 278 Score = 105 bits (263), Expect = 9e-21, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 67/159 (42%), Gaps = 15/159 (9%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 +++ L + + + AG IPT+T+ + D N A+ RLY +K+ A PL Sbjct: 67 DASNAWRLDEVVQLIKAGGVGVIPTDTLPAIVCDLHNRDAVLRLYSVKEMDARKPLSILC 126 Query: 65 SDISMVKKHASVDPLS-----LHLAKLFWPGPLTLVLDLLSTTDIHPL-------STANL 112 +S + + + P + ++A+ PGP T VL +T ++ P + Sbjct: 127 PSLSTITTYTTGFPTTASANWFNVARRLLPGPYTFVLP--ATKNLPPQCIDFMSGKNIHR 184 Query: 113 KTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITN 150 K+ R+P + L++ G L S + +S Sbjct: 185 KSVGVRMPADAVCQALLDGVGGALLCTSVHVPEVLSPDT 223 >gi|291333893|gb|ADD93573.1| hypothetical protein BU494 [uncultured marine bacterium MedDCM-OCT-S04-C385] Length = 167 Score = 105 bits (263), Expect = 9e-21, Method: Composition-based stats. Identities = 42/167 (25%), Positives = 64/167 (38%), Gaps = 6/167 (3%) Query: 26 AIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLSLHLA 84 A P E VYGL D + + +L E+KKR LI +K+ +D + Sbjct: 4 AYPCEGVYGLGCDPDSKKDVFKLCELKKRSIEKGLILISGVFEHFEKYINHLDKQDIDKL 63 Query: 85 KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRS 143 K WPGP T ++ + ++ N R KL E G L SAN S Sbjct: 64 KRPWPGPHTWLV--RANENVPEWIKGNSDLVALRHSSHPEVIKLTEKIGKVLTSTSANIS 121 Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 + + + I +I G I G + I N++ + +R Sbjct: 122 NDPPAMSADEV--TKIFGNEVTLIRGEIGNFGGATPIQNLETGEWIR 166 >gi|284046081|ref|YP_003396421.1| SUA5/yciO/yrdC domain protein [Conexibacter woesei DSM 14684] gi|283950302|gb|ADB53046.1| SUA5/yciO/yrdC domain protein [Conexibacter woesei DSM 14684] Length = 198 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 47/212 (22%), Positives = 79/212 (37%), Gaps = 19/212 (8%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M +++ D+ A G P +TVYGLA N AI R+Y +K R P Sbjct: 1 MAVLTHADAVAFSDCVA---GGGVAVFPADTVYGLAAAPGNSAAIARIYALKGRAPEKPA 57 Query: 61 ICHVSDIS-MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 D + + P + + PG +TL+L + + RV Sbjct: 58 ATMWFDRDRALAALPPLGPRTRRACERLLPGGVTLLLPDPADPAVA---------LGVRV 108 Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P + T HP+ SAN +G + + +I L++D G G S Sbjct: 109 PRLEGALAALATVPHPVVQSSANAAGGADPRTLDEV-PQAIRAGADLVLDAGPLP-GAPS 166 Query: 179 TIVNVQ---CEKKVRILRPGGLEIETLKRAIS 207 T+++++ I+R G + + A+ Sbjct: 167 TVIDLRRYERSGAWEIVRQGAVPRSVVASALG 198 >gi|309785606|ref|ZP_07680237.1| ribosome maturation factor [Shigella dysenteriae 1617] gi|308926726|gb|EFP72202.1| ribosome maturation factor [Shigella dysenteriae 1617] Length = 148 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 37/148 (25%), Positives = 54/148 (36%), Gaps = 8/148 (5%) Query: 47 RLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTD 103 RL E+K RP LI ++ +K + L+ + WPGP+T V +TT Sbjct: 3 RLLELKLRPVDKGLILIAANYEQLKPYIDDTMLTDAQRETIFSRWPGPVTFVFPAPATT- 61 Query: 104 IHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKE 162 T + RV L + YG PL SAN SG V + + Sbjct: 62 -PRWLTGRFDSLAVRVTDHPLVVALCQAYGKPLVSTSANLSGLPPCRTVDEV-RAQFGAA 119 Query: 163 IPLIIDGGISKIGLESTIVNVQCEKKVR 190 P ++ G S I + + R Sbjct: 120 FP-VVPGETGGRLNPSEIRDALTGELFR 146 >gi|146328766|ref|YP_001209262.1| hypothetical protein DNO_0343 [Dichelobacter nodosus VCS1703A] gi|322967307|sp|A5EW39|RIMN_DICNV RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|146232236|gb|ABQ13214.1| conserved hypothetical protein [Dichelobacter nodosus VCS1703A] Length = 190 Score = 104 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 43/178 (24%), Positives = 72/178 (40%), Gaps = 8/178 (4%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 + AG A PTE VYGL + + A+ + +K R A LI + + S Sbjct: 18 RHIFAGGVFAYPTEAVYGLGGNPADERAVCEILRLKGRTAAKGLIMVAGNWAQCCGWVSG 77 Query: 77 DPLSLHLAKLFWPG--PLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133 + W G P T ++ H ++TA+ KT R+ ++L G Sbjct: 78 VSKRDQAEMMDWAGDYPTTFIVYAGEKLCAH-VATADGKT-AIRISQHPLIQELCALIGQ 135 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 PL SAN SGQ +V + ++P+++ G + S I++ + +R Sbjct: 136 PLLSTSANLSGQEPARSVAAV--RQYFPDLPMVL-GALGAAERPSRIIDWHSRQVIRA 190 >gi|254372137|ref|ZP_04987630.1| hypothetical protein FTCG_01279 [Francisella tularensis subsp. novicida GA99-3549] gi|151569868|gb|EDN35522.1| hypothetical protein FTCG_01279 [Francisella novicida GA99-3549] Length = 180 Score = 104 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 40/186 (21%), Positives = 70/186 (37%), Gaps = 12/186 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + L K + ++IPT+TVYGL+ + A+ ++ +KKR + I D Sbjct: 3 TKDLNKIIGEITEDNVVSIPTDTVYGLSCGI-SKAAVAKVINLKKRDSSKGFIIISHDHK 61 Query: 69 MVKKHASVDPLSLHLAKLFW---PGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFT 124 + K+A LS P P T ++ T T R V Sbjct: 62 HLLKYADTTKLSNEQIDKISSKQPQPTTWIVPGKKNIQ---WLTGGKTTIAIRLVTTEIV 118 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + E + SAN SG+ I N K I + +++ + + S I+++ Sbjct: 119 TYICENINDAIISTSANISGEDFINNAKSISKTFDN---IYVLETEV-RSSQPSRIIDII 174 Query: 185 CEKKVR 190 ++ R Sbjct: 175 SGQQYR 180 >gi|254283092|ref|ZP_04958060.1| SUA5/YciO/yrdC, N-terminal domain [gamma proteobacterium NOR51-B] gi|219679295|gb|EED35644.1| SUA5/YciO/yrdC, N-terminal domain [gamma proteobacterium NOR51-B] Length = 185 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 38/179 (21%), Positives = 62/179 (34%), Gaps = 6/179 (3%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK-H 73 E + G +A E V+GL+ D + A+ ++ +K R LI +D + Sbjct: 11 IAERILLGDVVACAAEGVWGLSCDPFDGDAVEQVLALKGRSVSKGLIVVAADEWQLAPVL 70 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYG 132 +D L WPG T ++D T + RV L G Sbjct: 71 GHLDRSLRQELSLSWPGANTWLVDNHGV--FPRWITGDSNEVAVRVTAAPALAALCRAVG 128 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 PL SAN +G + ++ ++P G STI + + +R Sbjct: 129 GPLVSTSANPAGADPAKSAFQVVR-YFGPDLPRAASAVNRNAG-PSTIRRAKTGEVIRA 185 >gi|18424373|ref|NP_568924.1| yrdC protein-related [Arabidopsis thaliana] gi|14190379|gb|AAK55670.1|AF378867_1 AT5g60590/muf9_240 [Arabidopsis thaliana] gi|15215871|gb|AAK91479.1| AT5g60590/muf9_240 [Arabidopsis thaliana] gi|332009968|gb|AED97351.1| DHBP synthase RibB-like alpha/beta domain-containing protein [Arabidopsis thaliana] Length = 164 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 33/87 (37%), Positives = 51/87 (58%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 ++A E + + IA+PT+T+YG A D+ + A+ R+YEIK R +PL V D+ +K+ Sbjct: 77 QEAIEAIKSEKVIAVPTDTLYGFACDACSLEAVSRIYEIKGRKLTSPLAICVGDVLDIKR 136 Query: 73 HASVDPLSLHLAKLFWPGPLTLVLDLL 99 A+ L L PGP+TLVL + Sbjct: 137 VATTSHLPHGLLDSLLPGPVTLVLQRV 163 >gi|254368624|ref|ZP_04984640.1| Sua5/YciO/YrdC family protein [Francisella tularensis subsp. holarctica FSC022] gi|157121527|gb|EDO65718.1| Sua5/YciO/YrdC family protein [Francisella tularensis subsp. holarctica FSC022] Length = 180 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 71/186 (38%), Gaps = 12/186 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + L K + ++IPT+TVYGL+ + + A+ ++ +KKR + I D Sbjct: 3 TKDLNKIIGEITEDNVVSIPTDTVYGLSCNI-SKAAVAKVINLKKRDSSKGFIIISHDHK 61 Query: 69 MVKKHASVDPLSLHLAKLFWPG---PLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFT 124 + K+A + LS P T ++ T T R V Sbjct: 62 HLLKYADITKLSNEQINKISSKQAQPTTWIVPGKKDIQ---WLTGGKTTIAIRLVTTEIV 118 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + E + SAN SG+ I N K I + +++ + + S I+++ Sbjct: 119 TYICENINDAIISTSANISGEDFINNAKSISKTFDN---IYVLETEV-RSSQPSRIIDII 174 Query: 185 CEKKVR 190 ++ R Sbjct: 175 SGQQYR 180 >gi|326562329|gb|EGE12655.1| YrdC-like protein [Moraxella catarrhalis 103P14B1] gi|326573494|gb|EGE23460.1| YrdC-like protein [Moraxella catarrhalis O35E] gi|326575533|gb|EGE25458.1| YrdC-like protein [Moraxella catarrhalis 101P30B1] Length = 204 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 40/198 (20%), Positives = 71/198 (35%), Gaps = 19/198 (9%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++ L +L AG +A P+E+V+GL D+ N AI ++ +K R LI Sbjct: 10 ADELDLVANYLQAGGVLAYPSESVWGLGCDAFNTDAINQIINLKHRDIGKGLIVLTDAAE 69 Query: 69 MVKKHASVDPLSLHL--AKLFWP-------GPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 +K V + L + F LT ++ + S+ + + + T R+ Sbjct: 70 RLKSLIDVSHETSLLDYMQNFSDEFTHEHSRALTWLIPIQSSA-LPSVLIGSYDTLAVRI 128 Query: 120 PCGFTKK-LIETYGHP------LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172 K L P L S N S N+ + +I + G+ Sbjct: 129 TIHPVLKDLCHALISPTNPYGFLVSTSCNPSKSTPAKNLTQAMG-YFGDQIAYLDTDGLG 187 Query: 173 KIGLESTIVNVQCEKKVR 190 + S I ++ +R Sbjct: 188 FV-QPSCIKDLLAGHILR 204 >gi|291279580|ref|YP_003496415.1| hypothetical protein DEFDS_1190 [Deferribacter desulfuricans SSM1] gi|290754282|dbj|BAI80659.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1] Length = 203 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 36/172 (20%), Positives = 58/172 (33%), Gaps = 7/172 (4%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I T N ++ P PT+T+YG+ N A ++YEIKKR Sbjct: 1 MIIYKETTQNFIKLINLSNKNNQPFIYPTDTIYGIGASYLNEEANNKIYEIKKRDKGKTF 60 Query: 61 ICHVSDISMVKKHAS---VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 I + + + + FWPG T + + + Sbjct: 61 ITLIGSVKQLYDLIDRSFFTNTHEKIINRFWPGSFTFIFFANKKLPNYLIQDGK---IAV 117 Query: 118 RVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169 R+P P+ S N S + ++ ++K I K I I+ G Sbjct: 118 RLPSRKILSEAIKNTQPITSTSVNISDKKNLNDLKSIYK-YFNKNIKYILAG 168 >gi|89257161|ref|YP_514523.1| Sua5/YciO/YrdC family protein [Francisella tularensis subsp. holarctica LVS] gi|115315500|ref|YP_764223.1| Sua5/YciO/YrdC family protein [Francisella tularensis subsp. holarctica OSU18] gi|156503386|ref|YP_001429451.1| YrdC domain-containing protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|254366881|ref|ZP_04982919.1| sua5/yciO/yrdC family protein [Francisella tularensis subsp. holarctica 257] gi|290953359|ref|ZP_06557980.1| YrdC domain-containing protein [Francisella tularensis subsp. holarctica URFT1] gi|295313406|ref|ZP_06804013.1| YrdC domain-containing protein [Francisella tularensis subsp. holarctica URFT1] gi|89144992|emb|CAJ80352.1| Sua5/YciO/YrdC family protein [Francisella tularensis subsp. holarctica LVS] gi|115130399|gb|ABI83586.1| translation factor SUA5 [Francisella tularensis subsp. holarctica OSU18] gi|134252709|gb|EBA51803.1| sua5/yciO/yrdC family protein [Francisella tularensis subsp. holarctica 257] gi|156253989|gb|ABU62495.1| YrdC domain protein [Francisella tularensis subsp. holarctica FTNF002-00] Length = 180 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 71/186 (38%), Gaps = 12/186 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + L K + ++IPT+TVYGL+ + + A+ ++ +KKR + I D Sbjct: 3 TKDLNKIIGKITEDNVVSIPTDTVYGLSCNI-SKAAVAKVINLKKRDSSKGFIIISHDHK 61 Query: 69 MVKKHASVDPLSLHLAKLFWPG---PLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFT 124 + K+A + +S P T ++ T T R V Sbjct: 62 HLLKYADITKISNEQINKISSKQAQPTTWIVPGKKDIQ---WLTGGKTTIAIRLVTTEIV 118 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + E + SAN SG+ I N K I + +++ + + S I+++ Sbjct: 119 TYICENINDAIISTSANISGEDFINNAKSISKTFDN---IYVLETEV-RFSQPSRIIDII 174 Query: 185 CEKKVR 190 ++ R Sbjct: 175 SGQQYR 180 >gi|303248116|ref|ZP_07334381.1| SUA5/yciO/yrdC domain protein [Desulfovibrio fructosovorans JJ] gi|302490515|gb|EFL50423.1| SUA5/yciO/yrdC domain protein [Desulfovibrio fructosovorans JJ] Length = 212 Score = 103 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 51/206 (24%), Positives = 81/206 (39%), Gaps = 16/206 (7%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 + A L AG + PTET + L + A+ R+ IK RPA PL V + Sbjct: 5 DIAAAARGLMAGGCLVYPTETFFALGALATEAAALARIVSIKARPATKPLPLLVGGVGQ- 63 Query: 71 KKHASVDPLSL----------HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-V 119 A++ P LA+ FWPGPL+LV+ + L R Sbjct: 64 --FAAILPEGFAAGLLAADFDDLARRFWPGPLSLVVPCRDA--LPGLVKDASGRVSVRFT 119 Query: 120 PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 P L G + SAN SG + + + + + ++ +G G+ ST Sbjct: 120 PHPTAAALCRLAGGAVVATSANVSGNPPAASPEALDPAVVAAADGVVTEGPAPGGGVAST 179 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRA 205 + + +++RI R G + L+ A Sbjct: 180 VAGLLGGRRLRIFREGATPLGALRAA 205 >gi|296114103|ref|YP_003628041.1| YrdC-like protein [Moraxella catarrhalis RH4] gi|322967338|sp|D5V9A9|RIMN_MORCR RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|295921797|gb|ADG62148.1| YrdC-like protein [Moraxella catarrhalis RH4] Length = 204 Score = 103 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 69/198 (34%), Gaps = 19/198 (9%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++ L +L AG +A P+E+V+GL D+ N AI ++ +K R LI Sbjct: 10 ADELDLVANYLQAGGVLAYPSESVWGLGCDAFNTDAINQIINLKHRDIGKGLIVLTDAAE 69 Query: 69 MVKKHASVDPLS------LHLAKLFWPG---PLTLVLDLLSTTDIHPLSTANLKTACFRV 119 +K V + + + F LT ++ + S+ + + + T R+ Sbjct: 70 RLKSLIDVSHETSLLDYMQNFSDEFTHKHSRALTWLMPIQSSV-LPSVLIGSHDTLAVRI 128 Query: 120 PCGFTKK-LIETYGHP------LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172 K L P L S N S N+ + +I +D Sbjct: 129 TTHPLLKDLCHALISPTNPYGFLVSTSCNLSKSTPAKNLTQAMG-YFGDQIAY-LDTDGL 186 Query: 173 KIGLESTIVNVQCEKKVR 190 S I ++ +R Sbjct: 187 GFAQPSCIKDLLAGHILR 204 >gi|294789115|ref|ZP_06754354.1| protein RimN [Simonsiella muelleri ATCC 29453] gi|294482856|gb|EFG30544.1| protein RimN [Simonsiella muelleri ATCC 29453] Length = 191 Score = 103 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 41/178 (23%), Positives = 64/178 (35%), Gaps = 7/178 (3%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS- 75 L G IA PTE YGL + IRR+ IKKRP LI + + Sbjct: 17 AHLKRGGVIAYPTEFCYGLGCLPNHIVGIRRILHIKKRPQHKGLITIGQNFRQLAPLLKR 76 Query: 76 VDPLSLHLAKLFWPG--PLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYG 132 + + + W P TL+L ++ + L + RVP +++ Sbjct: 77 LPENDIQQYQQIWQTDPPTTLILPARASV-LPLLRGRRRGSLAVRVPRHDVARQVCWLAK 135 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 + L S NR+ + + LII G S I+N +++R Sbjct: 136 NALVSTSCNRAKKRPCRTERETRRQF--GRDVLIIGGKTGGYKQPSQIMNPFSAERLR 191 >gi|326571807|gb|EGE21813.1| YrdC-like protein [Moraxella catarrhalis BC7] Length = 204 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 40/198 (20%), Positives = 69/198 (34%), Gaps = 19/198 (9%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++ L +L AG +A P+E+V+GL D+ N AI ++ +K R LI Sbjct: 10 ADELDLVANYLQAGGVLAYPSESVWGLGCDAFNTDAINQIINLKHRDIGKGLIVLTDAAE 69 Query: 69 MVKKHASVDPLSLHL--AKLFWP-------GPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 +K V + L + F LT ++ + S+ + + + T R+ Sbjct: 70 RLKSLIDVSHETSLLDYMQNFSDEFTHEHSRALTWLIPIQSSA-LPSVLIGSYDTLAVRI 128 Query: 120 PCGFTKK-LIETYGHP------LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172 K L P L S N S N+ + +I +D Sbjct: 129 TIHPVLKDLCHALISPTNPYGFLVSTSCNPSKSTPAKNLTQAMG-YFGNQIAY-LDTDGL 186 Query: 173 KIGLESTIVNVQCEKKVR 190 S I ++ +R Sbjct: 187 GFAQPSCIKDLLAGHILR 204 >gi|326561729|gb|EGE12064.1| YrdC-like protein [Moraxella catarrhalis 7169] gi|326569049|gb|EGE19118.1| YrdC-like protein [Moraxella catarrhalis BC1] Length = 204 Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 40/198 (20%), Positives = 69/198 (34%), Gaps = 19/198 (9%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++ L +L AG +A P+E+V+GL D+ N AI ++ +K R LI Sbjct: 10 ADELDLVANYLQAGGVLAYPSESVWGLGCDAFNTDAINQIINLKHRDIGKGLIVLTDAAE 69 Query: 69 MVKKHASVDPLSLHL--AKLFWP-------GPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 +K V + L + F LT ++ + S+ + + + T R+ Sbjct: 70 RLKSLIDVSHETSLLDYMQNFSDEFTHEHSRALTWLMPIQSSV-LPSVLIGSHDTLAVRI 128 Query: 120 PCGFTKK-LIETYGHP------LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172 K L P L S N S N+ + +I +D Sbjct: 129 TTHPLLKDLCHALISPTNPYGFLVSTSCNPSKSTPAKNLTQAMG-YFGNQIAY-LDTDGL 186 Query: 173 KIGLESTIVNVQCEKKVR 190 S I ++ +R Sbjct: 187 GFAQPSCIKDLLAGHILR 204 >gi|255536893|ref|XP_002509513.1| sua5, putative [Ricinus communis] gi|223549412|gb|EEF50900.1| sua5, putative [Ricinus communis] Length = 326 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 45/227 (19%), Positives = 80/227 (35%), Gaps = 42/227 (18%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA----------- 56 DS L E L+ G IPT+TVY + ++ +A+ RL R Sbjct: 83 DSWKLDPVIELLNEGAVGVIPTDTVYAMVCHLKSHSAVERL-----RSLYLMRLFLILLL 137 Query: 57 -------MNPLICHVSDISMVKKHASVDPLS--------LHLAKLFWPGPLTLVLDLLST 101 + PL + + + + P S K PGP T +L Sbjct: 138 SLQFCHFLQPLSILCRSLRDIDIYTTGFPRSDGQGHANIFRAVKHCLPGPYTFILTSSKE 197 Query: 102 TD---IHPLST----ANLKTACFRVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKH 153 + +T A+ K R+P + ++E PL S Sbjct: 198 LPKQCVRYGTTTAKYASRKNVGVRIPDDAICQAMLEKMDVPLISTSVKGPKDNEWMIDPV 257 Query: 154 ILSSSICKE-IPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEI 199 +++ + E + ++DGG+ ++ ST+V++ +I+R G Sbjct: 258 VIADTYGPEGLDFVVDGGM-RVADPSTVVDMT-RVPPKIIRQGKGPK 302 >gi|302539279|ref|ZP_07291621.1| Sua5/YciO/YrdC family protein [Streptomyces sp. C] gi|302448174|gb|EFL19990.1| Sua5/YciO/YrdC family protein [Streptomyces sp. C] Length = 215 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 46/199 (23%), Positives = 74/199 (37%), Gaps = 13/199 (6%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81 G + +PT Y + D+ NP A + + E K+RP PL + D + + P + Sbjct: 19 GRLVVVPTARWYMICADAANPDAYKAILEGKQRPKNKPLALVIPDQNRARDLLHFTPDAE 78 Query: 82 HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSAN 141 LA FWPG L L L D + P L LA + N Sbjct: 79 RLAAAFWPGDLALFLPWREPADAARYTVVGSPALTTHAPGPL-GDLARAVPGLLAATTVN 137 Query: 142 RSGQISITN---------VKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192 SG + V+ L+ + L++DGG+ TIV+ ++ ++ Sbjct: 138 VSGDAGPDDRGPAITLAEVEEFLTEA--GLDALVMDGGVCPAANHLTIVDCAGDQT-HLV 194 Query: 193 RPGGLEIETLKRAISVELE 211 R G + + A+ L Sbjct: 195 RAGLVHPRAVASALGRTLP 213 >gi|87300985|ref|ZP_01083827.1| hypothetical protein WH5701_06035 [Synechococcus sp. WH 5701] gi|87284856|gb|EAQ76808.1| hypothetical protein WH5701_06035 [Synechococcus sp. WH 5701] Length = 213 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 52/191 (27%), Positives = 82/191 (42%), Gaps = 12/191 (6%) Query: 16 CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75 E++ AG P PT+T+ + P A +++E+K RP+ PLI S+ + Sbjct: 23 AEWILAGGPAIFPTDTL---PALAALPAAAGQIWELKSRPSNKPLILMGSEPETLFAALE 79 Query: 76 VDPLS--LHLAKLFWPGPLTLVLDLLST--TDIHPLSTANLKTACFRVP-CGFTKKLIET 130 + P L LA+ WPG LTLVL + P A R+P C ++L+ Sbjct: 80 LSPRPQWLELAERCWPGALTLVLPARGAVVAALQPGVVAAEARLGLRIPACERARELLRR 139 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID-GGISKIGLESTIVNVQCEKKV 189 G PLA SANRSG ++ ++P + G ST++ Sbjct: 140 TG-PLATTSANRSGDPPCLTASQA--EAMFPQVPRLAPLPWPHPSGQGSTVLAWSLAGTW 196 Query: 190 RILRPGGLEIE 200 ++LR G + + Sbjct: 197 QVLRSGAVMPD 207 >gi|254709555|ref|ZP_05171366.1| Sua5/YciO/YrdC/YwlC family protein [Brucella pinnipedialis B2/94] gi|261317083|ref|ZP_05956280.1| Sua5/YciO/YrdC/YwlC family protein [Brucella pinnipedialis B2/94] gi|261296306|gb|EEX99802.1| Sua5/YciO/YrdC/YwlC family protein [Brucella pinnipedialis B2/94] Length = 80 Score = 102 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 42/80 (52%), Positives = 54/80 (67%) Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302 + P EAL+ FG + A LNLS TG L+EAA NLF++M+ D +GA++IA I Sbjct: 1 MKPGEALLAFGPHRVAESNRAAAVLNLSATGDLREAAANLFDFMRRLDATGAATIAVEPI 60 Query: 303 PNHGLGIAINNRLERAAAPR 322 P GLG AIN+RL+RAAAPR Sbjct: 61 PLDGLGEAINDRLKRAAAPR 80 >gi|330470257|ref|YP_004408000.1| hypothetical protein VAB18032_01580 [Verrucosispora maris AB-18-032] gi|328813228|gb|AEB47400.1| hypothetical protein VAB18032_01580 [Verrucosispora maris AB-18-032] Length = 238 Score = 102 bits (256), Expect = 6e-20, Method: Composition-based stats. Identities = 43/208 (20%), Positives = 85/208 (40%), Gaps = 15/208 (7%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTA---IRRLYEIKKRPAMNPLICHVS 65 + AL L+ G + +P++T Y +A+ N + I L RP P+ S Sbjct: 21 TRALSLIVTRLNQGGFVLLPSDTCYSIALVPHNEDSWKFINSLLR---RPVDRPVSVAFS 77 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDL--LSTTDIHPLSTANLKTACFRVPCGF 123 + V+ + ++ +LHL + F PGP+TLV + + + +T FR+P Sbjct: 78 GLDQVRGYLELNATALHLVERFTPGPITLVCPANQRAHKFAAKSTGSPDRTLGFRIPDSK 137 Query: 124 T-KKLIETYGHPLAIPSANRSGQISITNVKHILS------SSICKEIPLIIDGGISKIGL 176 + + P+ + + + L +++ ++G S Sbjct: 138 IERDVASHARWPITTTAVRDKRDEPVQSFDEALKIVTAAAAAVGSARWHAVEGRDSFYSK 197 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKR 204 ST+V V +V ++R G + ET+++ Sbjct: 198 HSTVVRVDQSGEVGLIREGDIPFETIRQ 225 >gi|254375283|ref|ZP_04990763.1| hypothetical protein FTDG_01477 [Francisella novicida GA99-3548] gi|151573001|gb|EDN38655.1| hypothetical protein FTDG_01477 [Francisella novicida GA99-3548] Length = 180 Score = 102 bits (256), Expect = 6e-20, Method: Composition-based stats. Identities = 39/182 (21%), Positives = 69/182 (37%), Gaps = 13/182 (7%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 + E + ++IPT+TVYGL+ + A+ ++ +KKR + I D + K Sbjct: 8 KIISEIIKDN-VVSIPTDTVYGLSCGI-SKAAVAKVINLKKRDSSKGFIIISHDHKHLLK 65 Query: 73 HASVDPLSLHLAKLFW---PGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLI 128 +A LS P P T ++ T T R V + Sbjct: 66 YADTTKLSNEQIDKISSKQPQPTTWIVPGKKNIQ---WLTGGKITIAIRLVTTEIVTYIC 122 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E + SAN SG+ I N K I + +++ + + S I+++ ++ Sbjct: 123 ENINDAIISTSANISGEDFINNAKSISKTFNN---IYVLETEV-RSSQPSRIIDIISGQR 178 Query: 189 VR 190 R Sbjct: 179 YR 180 >gi|118496772|ref|YP_897822.1| Sua5/YciO/YrdC family protein [Francisella tularensis subsp. novicida U112] gi|194324081|ref|ZP_03057856.1| YrdC domain protein, putative [Francisella tularensis subsp. novicida FTE] gi|208779956|ref|ZP_03247299.1| YrdC domain protein, putative [Francisella novicida FTG] gi|118422678|gb|ABK89068.1| Sua5/YciO/YrdC family protein [Francisella novicida U112] gi|194321978|gb|EDX19461.1| YrdC domain protein, putative [Francisella tularensis subsp. novicida FTE] gi|208743960|gb|EDZ90261.1| YrdC domain protein, putative [Francisella novicida FTG] gi|328676232|gb|AEB27102.1| Sua5 YciO YrdC YwlC family protein [Francisella cf. novicida Fx1] Length = 180 Score = 102 bits (256), Expect = 6e-20, Method: Composition-based stats. Identities = 38/182 (20%), Positives = 69/182 (37%), Gaps = 13/182 (7%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 + E + ++IPT+TVYGL+ + + A+ ++ +KKR + I D + K Sbjct: 8 KIISEIIKDN-VVSIPTDTVYGLSCNI-SKAAVAKVINLKKRDSSKGFIIISHDHKHLLK 65 Query: 73 HASVDPLSLHLAKLFWPG---PLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLI 128 +A LS P T ++ T T R V + Sbjct: 66 YADTTKLSNEQINKISSKQAQPTTWIVPGKKDIQ---WLTGGKTTIAIRLVTTEIVTYIC 122 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 E + SAN SG+ I N K I + +++ + + S I+++ ++ Sbjct: 123 ENINDAIISTSANISGEDFINNAKSISKTFDN---IYVLETEV-RSSQPSRIIDIISGQQ 178 Query: 189 VR 190 R Sbjct: 179 YR 180 >gi|326560686|gb|EGE11054.1| YrdC-like protein [Moraxella catarrhalis 46P47B1] gi|326574347|gb|EGE24290.1| YrdC-like protein [Moraxella catarrhalis CO72] Length = 204 Score = 102 bits (256), Expect = 6e-20, Method: Composition-based stats. Identities = 40/198 (20%), Positives = 69/198 (34%), Gaps = 19/198 (9%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++ L +L AG +A P+E+V+GL D+ N AI ++ +K R LI Sbjct: 10 ADELDLVANYLQAGGVLAYPSESVWGLGCDAFNTDAINQIINLKHRDIGKGLIVLTDAAK 69 Query: 69 MVKKHASVDPLSLHL--AKLFWP-------GPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 +K V + L + F LT ++ + S+ + + + T R+ Sbjct: 70 RLKSLIDVSHETSLLDYMQNFSDEFTHEHSRALTWLMPIQSSA-LPSVLIGSYDTLAVRI 128 Query: 120 PCGFTKK-LIETYGHP------LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172 K L P L S N S N+ + +I +D Sbjct: 129 TIHPVLKDLCHALISPTNPYGFLVSTSCNPSKSTPAKNLTQAMG-YFGNQIAY-LDTDGL 186 Query: 173 KIGLESTIVNVQCEKKVR 190 S I ++ +R Sbjct: 187 GFAQPSCIKDLLAGHILR 204 >gi|134302710|ref|YP_001122678.1| Sua5/YciO/YrdC family protein [Francisella tularensis subsp. tularensis WY96-3418] gi|187932251|ref|YP_001892236.1| Sua5/YciO/YrdC family protein [Francisella tularensis subsp. mediasiatica FSC147] gi|134050487|gb|ABO47558.1| Putative Sua5/YciO/YrdC family protein [Francisella tularensis subsp. tularensis WY96-3418] gi|187713160|gb|ACD31457.1| Sua5/YciO/YrdC family protein [Francisella tularensis subsp. mediasiatica FSC147] Length = 180 Score = 102 bits (256), Expect = 6e-20, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 70/186 (37%), Gaps = 12/186 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + L K + ++IPT+TVYGL+ + + A+ ++ +KKR + I D Sbjct: 3 TKDLNKIIGEITEDNVVSIPTDTVYGLSCNI-SKAAVAKVINLKKRDSSKGFIIISHDHK 61 Query: 69 MVKKHASVDPLSLHLAKLFWPG---PLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFT 124 + K+A LS P T ++ T T R V Sbjct: 62 HLLKYADTTKLSNEQINKISSKQAQPTTWIVPGKKDIQ---WLTGGKTTIAIRLVTTEIV 118 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + E + SAN SG+ I N K I + +++ + + S I+++ Sbjct: 119 TYICENINDAIISTSANISGEDFINNAKSISKTFDN---IYVLETEV-RSSQPSRIIDII 174 Query: 185 CEKKVR 190 ++ R Sbjct: 175 SGQQYR 180 >gi|326571738|gb|EGE21751.1| YrdC-like protein [Moraxella catarrhalis BC8] Length = 204 Score = 102 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 40/198 (20%), Positives = 69/198 (34%), Gaps = 19/198 (9%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++ L +L AG +A P+E+V+GL D+ N AI ++ +K R LI Sbjct: 10 ADELDLVANYLQAGGVLAYPSESVWGLGCDAFNTDAINQIINLKHRDIGKGLIVLTDAAK 69 Query: 69 MVKKHASVDPLSLHL--AKLFWP-------GPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 +K V + L + F LT ++ + S+ + + + T R+ Sbjct: 70 RLKSLIDVSHETSLLDYMQNFSDEFTHEHSRALTWLIPIQSSA-LPSVLIGSYDTLAVRI 128 Query: 120 PCGFTKK-LIETYGHP------LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172 K L P L S N S N+ + +I +D Sbjct: 129 TIHPVLKDLCHALISPTNPYGFLVSTSCNPSKSTPAKNLTQAMG-YFGNQIAY-LDTDGL 186 Query: 173 KIGLESTIVNVQCEKKVR 190 S I ++ +R Sbjct: 187 GFAQPSCIKDLLAGHILR 204 >gi|296122837|ref|YP_003630615.1| protein-tyrosine phosphatase, low molecular weight [Planctomyces limnophilus DSM 3776] gi|296015177|gb|ADG68416.1| Protein-tyrosine phosphatase, low molecular weight [Planctomyces limnophilus DSM 3776] Length = 383 Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 66/297 (22%), Positives = 110/297 (37%), Gaps = 35/297 (11%) Query: 2 QIMSITDS-NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRL------YEIKKR 54 +I D + + + C+ L G + +PTET Y +A + + ++RL + + Sbjct: 6 EIRRSDDPRDVIHRVCQSLAQGELVGLPTETTYTVAASALSEVGVQRLKALATELAVNHQ 65 Query: 55 PAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDL---------LSTTDIH 105 P L+ +D + L + WPGP+TL L T H Sbjct: 66 PPQFELLLKAAD-EALDYLVEQSRYGRKLIRRCWPGPVTLRFPKSHCGWFFEQLPETSRH 124 Query: 106 PLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP 164 L TA T FRVP ++ PL S + G+ + + + + Sbjct: 125 -LLTAPENTVSFRVPAHTLPADILNLLPGPLIALSEAQPGRPPLRHARDA-DQRFGNNLA 182 Query: 165 LIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCVDETS-TPQS 222 LI+D G S+ G T+V + I PG + T+ R S V L C T +P + Sbjct: 183 LIVDDGPSRYGEPGTVVQI-GNNDWNIAFPGVVSDRTMGRLASEVILFACTGNTCRSPMA 241 Query: 223 PGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAA 279 + + A + P E L+ G V I +A ++ + + A Sbjct: 242 EVLFRKLLAEKLSC--------PEEELVDHGYV----ILSAGLAAAIGAPANPEAIA 286 >gi|255082207|ref|XP_002508322.1| predicted protein [Micromonas sp. RCC299] gi|226523598|gb|ACO69580.1| predicted protein [Micromonas sp. RCC299] Length = 236 Score = 102 bits (255), Expect = 8e-20, Method: Composition-based stats. Identities = 39/210 (18%), Positives = 72/210 (34%), Gaps = 21/210 (10%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 +D L + + AG IPT++ Y VD + ++ LY++K P+ + Sbjct: 4 SDEWRLDDVADAIRAGSVGIIPTDSRYAFVVDLESRDGVQTLYDLKGAKDYKPMSILCAG 63 Query: 67 ISMVKKHASVDP--------LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTAN------- 111 S + ++ P LA+ PGP T +L+ L Sbjct: 64 FSDIDRYTQGFPDNVVAGRQQPFKLARKCLPGPYTFILNAGKDMPKVCLLDPRSKSKNCK 123 Query: 112 -LKTACFRVPCG-FTKKLIETYGHPL---AIPSANRSGQISITNVKHILSSSICKEIPLI 166 KT RVP T L+ PL ++P+ ++ + Sbjct: 124 ARKTVGVRVPSHPVTAALLARLDRPLLCGSVPNLEADTYDDDVQDPVLMLDEYERRGLGF 183 Query: 167 IDGGISKIGLESTIVNVQCEKKVRILRPGG 196 + ST++++ K +++R G Sbjct: 184 LVDCGVMRNPGSTVIDLSKGKP-QLVRRGA 212 >gi|226330253|ref|ZP_03805771.1| hypothetical protein PROPEN_04166 [Proteus penneri ATCC 35198] gi|225201048|gb|EEG83402.1| hypothetical protein PROPEN_04166 [Proteus penneri ATCC 35198] Length = 104 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 38/89 (42%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + + ++ + L G + PT++ Y + N A+ R+ I++ + D+S Sbjct: 14 ARLIEQSADILRKGGVVIYPTDSGYAIGCCLENKDAMTRICRIRQLDKKHNFTLMCRDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLD 97 + +A VD + L K PG T L Sbjct: 74 EIANYAYVDNVVFRLIKNNTPGNYTFYLK 102 >gi|22299666|ref|NP_682913.1| hypothetical protein tll2123 [Thermosynechococcus elongatus BP-1] gi|22295850|dbj|BAC09675.1| tll2123 [Thermosynechococcus elongatus BP-1] Length = 197 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 51/205 (24%), Positives = 75/205 (36%), Gaps = 15/205 (7%) Query: 1 MQIMSITDSNALRKACEFLDAGL-PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 M+ M+ AL + G I+ PT+TV LA +Y K+R P Sbjct: 1 MRTMAQVSMAAL---VAAVRTGNWLISFPTDTVPALASRCDRGE---LIYTAKERQPDKP 54 Query: 60 LICHVSDISMVKKHASVDPLSLH----LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115 LI ++ + +A +WPG +TLVL L+ T Sbjct: 55 LILMGANPEQLWPFVRGSAAEWEQWSAMAARYWPGAVTLVLPAAELP--PGLNPLGTGTI 112 Query: 116 CFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175 RVP + + PLA S NRSGQ ++ + + L Sbjct: 113 GLRVPDWPPAQALLQQTGPLATTSINRSGQP-PLIELGAIAREFPQVLTLHPWQLPPSPP 171 Query: 176 LESTIVNVQCEKKVRILRPGGLEIE 200 ST+V Q + ILR G ++IE Sbjct: 172 QPSTVVQWQS-GQWHILRQGRVQIE 195 >gi|170078339|ref|YP_001734977.1| YrdC domain-containing protein [Synechococcus sp. PCC 7002] gi|169886008|gb|ACA99721.1| yrdC domain protein [Synechococcus sp. PCC 7002] Length = 211 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 46/206 (22%), Positives = 86/206 (41%), Gaps = 6/206 (2%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M A+ E LD G + I T+ VY L ++ NP A +++E+K PL Sbjct: 1 MATFLPKSPQAIAPIIEQLDRGQVVVIHTDVVYLLIANALNPQATNQIHELKGWEPRKPL 60 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 ++ V ++ + + L F P P++++L ++ TA P Sbjct: 61 TLLLTPPK-VPEYGILSAEAQTLVNQF-PYPISVILPHR--NNLAEGVTAGHSEVFVSCP 116 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 F L P+A +A+ ++ + K + +++ LIIDGG +K + +T+ Sbjct: 117 DQFIYDLAAQAPFPIAAGTASLGSEMRANDAKTA-EAFFGQQVSLIIDGGKAKERIRTTL 175 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAI 206 ++ IL G + + L+ I Sbjct: 176 IDCHL-PLPTILNFGLVSFDDLREII 200 >gi|229495538|ref|ZP_04389271.1| Sua5/YciO/YrdC/YwlC family protein [Porphyromonas endodontalis ATCC 35406] gi|229317521|gb|EEN83421.1| Sua5/YciO/YrdC/YwlC family protein [Porphyromonas endodontalis ATCC 35406] Length = 203 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 41/194 (21%), Positives = 74/194 (38%), Gaps = 8/194 (4%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSD 66 + + L K + G I PT Y + AI + +K P + L D Sbjct: 11 NWDLLHKIAAQIRDGAIIIYPTGIGYSYGCSAYKARAIEEVCRLKGVDPKKHRLTIMCRD 70 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125 ++ ++A VD S + P+T +L +T+++ L + R+P Sbjct: 71 LADFTRYAKVDNTSFRYIREHEKEPITYLLP--ATSELPKLLINKHE-VGLRLPLHPLAT 127 Query: 126 KLIETYGHPLAIPSAN-RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 L+E PL S + ++ E+ I+DGG +G + IV++ Sbjct: 128 LLLEVLDEPLLTASLPTKKEDPEYRTDPELIDELYGHEVYTILDGG-CALGGTTAIVSLT 186 Query: 185 CEKKVRILRPGGLE 198 + I+RP G+ Sbjct: 187 QGEP-EIVRPAGIP 199 >gi|330939568|gb|EGH42885.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. pisi str. 1704B] Length = 95 Score = 101 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 36/82 (43%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E + AG + PT++ Y L + +AI R+ +++ + D+S Sbjct: 14 PRLIKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLS 73 Query: 69 MVKKHASVDPLSLHLAKLFWPG 90 + A VD + K PG Sbjct: 74 QLGLFAKVDTGAFRALKTLTPG 95 >gi|56707347|ref|YP_169243.1| Sua5/YciO/YrdC family protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110669817|ref|YP_666374.1| Sua5/YciO/YrdC family protein [Francisella tularensis subsp. tularensis FSC198] gi|224456418|ref|ZP_03664891.1| Sua5/YciO/YrdC family protein [Francisella tularensis subsp. tularensis MA00-2987] gi|254370027|ref|ZP_04986034.1| Sua5/YciO/YrdC family protein [Francisella tularensis subsp. tularensis FSC033] gi|254874184|ref|ZP_05246894.1| sua5/yciO/yrdC family protein [Francisella tularensis subsp. tularensis MA00-2987] gi|56603839|emb|CAG44815.1| Sua5/YciO/YrdC family protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110320150|emb|CAL08198.1| Sua5/YciO/YrdC family protein [Francisella tularensis subsp. tularensis FSC198] gi|151568272|gb|EDN33926.1| Sua5/YciO/YrdC family protein [Francisella tularensis subsp. tularensis FSC033] gi|254840183|gb|EET18619.1| sua5/yciO/yrdC family protein [Francisella tularensis subsp. tularensis MA00-2987] gi|282158479|gb|ADA77870.1| Sua5/YciO/YrdC family protein [Francisella tularensis subsp. tularensis NE061598] Length = 180 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 71/186 (38%), Gaps = 12/186 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + L K + ++IPT+TVYGL+ + + A+ ++ +KKR + I D Sbjct: 3 TKDLNKIIGEITEDNVVSIPTDTVYGLSCNI-SKAAVAKVINLKKRDSSKGFIIISHDHK 61 Query: 69 MVKKHASVDPLSLHLAKLFWPG---PLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFT 124 + K+A LS P T ++ T + T R V Sbjct: 62 HLLKYADTTKLSNEQINKISSKQAQPTTWIVPGKKDIQ---WLTGDKTTIAIRLVTTEIV 118 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + E + SAN SG+ I N K I + +++ + + S I+++ Sbjct: 119 TYICENINDAIISTSANISGKDFINNAKSISKTFDN---IYVLETEV-RSSQPSRIIDII 174 Query: 185 CEKKVR 190 ++ R Sbjct: 175 SGQQYR 180 >gi|15806862|ref|NP_295585.1| SUA5-like protein [Deinococcus radiodurans R1] gi|6459642|gb|AAF11415.1|AE002026_3 SUA5-related protein [Deinococcus radiodurans R1] Length = 230 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 60/211 (28%), Positives = 79/211 (37%), Gaps = 18/211 (8%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 LR A + LD G +A PTETV+GL + P A LY K R A PL Sbjct: 19 PPELLRAAADVLDRGGVVAYPTETVWGL---AARPAAAAELYRRKGREANKPLQLSCPGA 75 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTT----DIHPLSTANLKTACFRVPCG- 122 + A P L L+ WPGPLT+V + A RVP Sbjct: 76 AAALALAVPSPALLALS-ACWPGPLTVVTPGRPERLEDWGAGAEAVAPDGWLGLRVPAHP 134 Query: 123 FTKKLIETYGHPLAIPSANRSG----QISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 L+ G PLA S N SG + L+ E D + S Sbjct: 135 VALALLSAAGGPLATTSLNPSGQAAATTQAEAEAYALADLTLPEPAGTADRPPAA---PS 191 Query: 179 TIVNV--QCEKKVRILRPGGLEIETLKRAIS 207 T++ + + E R+LR GGL L ++ Sbjct: 192 TVLRLPAEGEDTARMLRLGGLSQADLAARLA 222 >gi|124023897|ref|YP_001018204.1| translation factor (SUA5) [Prochlorococcus marinus str. MIT 9303] gi|123964183|gb|ABM78939.1| Putative translation factor (SUA5) [Prochlorococcus marinus str. MIT 9303] Length = 196 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 58/201 (28%), Positives = 90/201 (44%), Gaps = 17/201 (8%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 ++ D++AL L AG +PT+T+ + P +L+ +K+R A PLI Sbjct: 7 AVLDASAL---ASRLHAGSAALLPTDTLP---ALAAAPVHAAQLWTMKQRSADKPLILMA 60 Query: 65 SDISMVKKHASVDPLSLH----LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 + + A V PL+L +A+ +WPG LTLV+ ++ + T RVP Sbjct: 61 ATPEEL--LAHVSPLALEDAWSMARRYWPGALTLVVP--ASGVLVEALNPGAFTLGLRVP 116 Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 CG + L++ G PLA SAN SG + T + L + GL ST Sbjct: 117 DCGVIRCLLKQSG-PLATTSANLSGA-APTFSADAAHTCFPGLPLLGPLPWPTPSGLAST 174 Query: 180 IVNVQCEKKVRILRPGGLEIE 200 +V Q + LR G + +E Sbjct: 175 VVAWQGSGRWHELRRGAVVLE 195 >gi|194477096|ref|YP_002049275.1| Putative translation factor (SUA5) [Paulinella chromatophora] gi|171192103|gb|ACB43065.1| Putative translation factor (SUA5) [Paulinella chromatophora] Length = 203 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 52/187 (27%), Positives = 85/187 (45%), Gaps = 13/187 (6%) Query: 16 CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75 + + AG P PT+T+ +A ++++E+K R PLI + ++ K + Sbjct: 11 ADRICAGSPGIFPTDTLPAIATIPGKA---KQIWELKHRIKSKPLILMGHEAELLFKFIA 67 Query: 76 VDPLS--LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYG 132 LS + + +WPG LT+++ ++ I + RVP C T L+ G Sbjct: 68 QPILSDCYKVGERYWPGALTIIVP--ASGLIVKELNPLGNSIGLRVPACRSTLDLLSRTG 125 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLI--IDGGISKIGLESTIVNVQCEKKVR 190 PLA SAN SG+ H +S+ K IPL+ + + I STIV + K + Sbjct: 126 -PLATSSANISGK-YPYLFPHQVSADF-KNIPLLGPLPWPKNTITTGSTIVELYGSGKWK 182 Query: 191 ILRPGGL 197 I R G + Sbjct: 183 IHRQGTV 189 >gi|325971179|ref|YP_004247370.1| SUA5/yciO/yrdC domain [Spirochaeta sp. Buddy] gi|324026417|gb|ADY13176.1| SUA5/yciO/yrdC domain [Spirochaeta sp. Buddy] Length = 189 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 40/202 (19%), Positives = 86/202 (42%), Gaps = 21/202 (10%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 Q++ T + + L + +P +T+YGL+ T++ +L +K++ + I Sbjct: 6 QLLYKTVDTTVDQVVRLLQENKILVLPCDTIYGLSGQYN--TSLEKLCSLKQKKGQHQFI 63 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120 + + + P+ + WP LT++L+ + + RVP Sbjct: 64 VL-ATLMQAHHLCKIPPV----LEKHWPCALTVILE----------NQNGEGSTAIRVPD 108 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 FT++++ G P+ S N +G +IT++ I+ + K ++ID + ST+ Sbjct: 109 DPFTQQILNKLGKPIYSTSVNDAG-FAITSITDIIFTYKQKVQAIVIDPDRGRD-TPSTL 166 Query: 181 VNVQCEKKVRILRPGGLEIETL 202 ++ E ++R G + L Sbjct: 167 IDCTKE-PYELIRCGAYDASAL 187 >gi|269467898|gb|EEZ79637.1| translation factor SUA5 [uncultured SUP05 cluster bacterium] Length = 178 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 48/179 (26%), Positives = 85/179 (47%), Gaps = 7/179 (3%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 R A E+L AG I+ PT+T+ GL+ R ++ RL +IK+R A LI SD+ ++ Sbjct: 6 RLASEYLKAGGVISHPTDTIQGLSCLPRFEHSMHRLLKIKQRSAAKGLILLASDVRYLED 65 Query: 73 HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY 131 + + +S + P T +L +++ I L T T R+ +L + Sbjct: 66 YVA--DVSQLKSIKNTGAPTTYLL--KASSKISKLLTGEFSTVAIRLTDNALIAELCKAT 121 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 L SAN +G+ S T+V + L+ E+ +I + S I+N++ +++R Sbjct: 122 NSALVSSSANTTGKHSATSVLN-LNVFFKGELDFMI-APKNYNNSPSRIINLETGERLR 178 >gi|294790664|ref|ZP_06755822.1| Sua5/YciO/YrdC/YwlC family protein [Scardovia inopinata F0304] gi|294458561|gb|EFG26914.1| Sua5/YciO/YrdC/YwlC family protein [Scardovia inopinata F0304] Length = 322 Score = 99.8 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 5/117 (4%) Query: 2 QIMSITDSNALRKAC----EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57 +I+ + D ++L K E + +G IPT+TVYGL D + +A++ ++ K RP Sbjct: 4 KILPLYDGDSLEKTVQTVTEAIRSGKTAVIPTDTVYGLVADPLSVSAVQGIFRAKHRPPE 63 Query: 58 NPLICHVSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK 113 + S+ +K + P + L +F PG L LV ++ST + T + Sbjct: 64 KTVQILCSNPDQARKLGLIIPHIYEQLLDIFPPGSLCLVCSVISTCPLVTTRTVSGG 120 Score = 57.4 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 1/78 (1%) Query: 106 PLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPL 165 P L+T R P + I PLA SANRSG+ + T L + E + Sbjct: 181 PGRNPILRTQAVRFPSDSATQAILNQTGPLAASSANRSGRQAATTAAEAL-DQLGDEPAV 239 Query: 166 IIDGGISKIGLESTIVNV 183 DGG+S ST++++ Sbjct: 240 YADGGVSSGPAASTVISL 257 >gi|54113065|gb|AAV29166.1| NT02FT0158 [synthetic construct] Length = 180 Score = 99.8 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 37/171 (21%), Positives = 67/171 (39%), Gaps = 12/171 (7%) Query: 24 PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHL 83 ++IPT+TVYGL+ + + A+ ++ +KKR + I D + K+A LS Sbjct: 18 VVSIPTDTVYGLSCNI-SKAAVAKVINLKKRDSSKGFIIISHDHKHLLKYADTTKLSNEQ 76 Query: 84 AKLFWPG---PLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLIETYGHPLAIPS 139 P T ++ T + T R V + E + S Sbjct: 77 INKISSKQAQPTTWIVPGKKDIQ---WLTGDKTTIAIRLVTTEIVTYICENINDAIISTS 133 Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 AN SG+ I N K I + +++ + + S I+++ ++ R Sbjct: 134 ANISGKDFINNAKSISKTFDN---IYVLETEV-RSSQPSRIIDIISGQQYR 180 >gi|33863926|ref|NP_895486.1| hypothetical protein PMT1659 [Prochlorococcus marinus str. MIT 9313] gi|33635510|emb|CAE21834.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT 9313] Length = 196 Score = 99.4 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 56/206 (27%), Positives = 87/206 (42%), Gaps = 17/206 (8%) Query: 1 MQIMS--ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58 M ++ + D++AL L AG +PT+T+ + P +L+ IK+R A Sbjct: 1 MAVLPSAVLDASAL---ASRLHAGSAALLPTDTLP---ALAAAPVHAAQLWTIKQRSADK 54 Query: 59 PLICHVSDISMVKKHASVDPLSLH----LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT 114 PLI + + A V PL+L +A+ +WPG LTLV+ ++ + T Sbjct: 55 PLILMGATPEEL--LAHVLPLALEDVWSMARRYWPGALTLVVP--ASGVLVEALNPGAFT 110 Query: 115 ACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174 RVP + + PLA SAN SG + T + L + Sbjct: 111 LGLRVPDCGMLRTLLKQSGPLATTSANLSGS-APTFSADAAHTCFPGLPLLGPLPWPTPS 169 Query: 175 GLESTIVNVQCEKKVRILRPGGLEIE 200 GL ST+V Q + LR G + +E Sbjct: 170 GLASTVVAWQGAGRWHELRRGAVVLE 195 >gi|47222934|emb|CAF99090.1| unnamed protein product [Tetraodon nigroviridis] Length = 472 Score = 99.4 bits (247), Expect = 8e-19, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 72/166 (43%), Gaps = 13/166 (7%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 ++++++ E + +G +PT+TVY L P A+ + Y +KK+ P+ +S I Sbjct: 308 ASSVQQIAEIMKSGGICGMPTDTVYVLVAACNRPEAVVKAYNVKKQAQDRPMSMWISSIQ 367 Query: 69 MVKKHAS-VDPLSLHLAKLFWP-----GPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 ++ + PL L + WP GP + L + ++ R P C Sbjct: 368 QLEPVRHLLSPLLLDFMEAAWPSSISMGPWMDIFGLGDASR----HIGTPQSIAIRNPDC 423 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 LI G P+A+ SAN +G+ T+ + + + ++ I Sbjct: 424 SVATYLISKVG-PIAVTSANPTGEADTTHHNQVY-AKLGNKVSGRI 467 >gi|167950067|ref|ZP_02537141.1| putative translation factor (SUA5) [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 161 Score = 99.0 bits (246), Expect = 8e-19, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 2/144 (1%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 L + A+ R+ I++ + D++ + +A V+ L K PGP T Sbjct: 14 LGCHIGDKGAMERIRRIRRLDDKHNFTLVCRDLTEIASYAKVNNRDYRLLKNLTPGPYTF 73 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKH 153 +L L A KT RVP L+ P+ + G + Sbjct: 74 ILKATKQVP-RRLQHAKRKTIGIRVPDNRIVDALLTALAEPIMSSTLVLPGDEMPLTDPY 132 Query: 154 ILSSSICKEIPLIIDGGISKIGLE 177 + I E+ LIIDGG + Sbjct: 133 EMRQLIDHEVDLIIDGGYWRFRRP 156 >gi|289569313|ref|ZP_06449540.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] gi|289543067|gb|EFD46715.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] Length = 136 Score = 98.6 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 4/134 (2%) Query: 76 VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPL 135 + + L + FWPG L+LV+ + T R+P + P+ Sbjct: 1 MPDGARELIRAFWPGALSLVVVQAPSLQW--DLGDAHGTVMLRMPLHPVAIELLREVGPM 58 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 A+ SAN SG + + S + + + +D G S+ STIV++ R+LR G Sbjct: 59 AVSSANISGHPPPVDAEQA-RSQLGDHVAVYLDAGPSEQQAGSTIVDLTGATP-RVLRQG 116 Query: 196 GLEIETLKRAISVE 209 + E + + V+ Sbjct: 117 PVSTERIAEVLGVD 130 >gi|330721253|gb|EGG99349.1| YciO family [gamma proteobacterium IMCC2047] Length = 132 Score = 98.6 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 59/135 (43%), Gaps = 4/135 (2%) Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLI 128 + +A VD + + K PG T +L+ S L +T R+P T+ L+ Sbjct: 1 MSTYAKVDNSTYRILKAHTPGAYTFILNATSEVP-RRLLHPKRRTIGLRLPEHNITQALL 59 Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 + G PL S G + + +++ ++ LIIDGG G+E+T V ++ Sbjct: 60 DQLGEPLMSTSLIMPGDEIPMTDPYDIRATLEHQVDLIIDGGYC--GMEATSVINMTDEV 117 Query: 189 VRILRPGGLEIETLK 203 ++R G ++ + Sbjct: 118 PEVVRFGMGDVSDFQ 132 >gi|163750846|ref|ZP_02158080.1| hydrogenase maturation protein HypF [Shewanella benthica KT99] gi|161329404|gb|EDQ00399.1| hydrogenase maturation protein HypF [Shewanella benthica KT99] Length = 610 Score = 97.4 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 45/189 (23%), Positives = 74/189 (39%), Gaps = 22/189 (11%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 AL + E L G IAI GL D+ N A+ RL E K+RP+ PL VS Sbjct: 47 ALTETVERLSKGEIIAIK-----GLGGFHLVCDATNHDAVERLRERKRRPS-KPLAVMVS 100 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTT-DIHPLSTANLKTACFRVP-CGF 123 + M K + P+T++ S T ++ P + +P Sbjct: 101 GLEMAKSIVTGSQFEWDQL-CALERPITIMNKNRSNTLNLSPAVAPGIDKLGVFLPYTPL 159 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 L++ P+ SANRSG+ I + I+ + + + I+D I+N Sbjct: 160 HSLLLKALDTPIVATSANRSGEPIICDANEII-AQLADVVDSILDHNRP-------IINA 211 Query: 184 QCEKKVRIL 192 + ++ + Sbjct: 212 CDDSVIQCV 220 >gi|31544343|ref|NP_852921.1| Putative translation factor/ribosome maturation factor [Mycoplasma gallisepticum str. R(low)] gi|31541187|gb|AAP56489.1| Putative translation factor/ribosome maturation factor (Sua5) [Mycoplasma gallisepticum str. R(low)] gi|284930383|gb|ADC30322.1| Putative translation factor/ribosome maturation factor (Sua5) [Mycoplasma gallisepticum str. R(high)] Length = 182 Score = 97.1 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 48/209 (22%), Positives = 87/209 (41%), Gaps = 33/209 (15%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+++ + + ++ + +PT+TV+G+ S+N ++Y+ KKR L Sbjct: 1 MKVLEF--EKDFDEIVKAINDDKLVILPTDTVFGVICKSKN-----KIYDFKKRDLNKKL 53 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 I SD+ D L L LA FWPG LTL+ + S +R+P Sbjct: 54 IYFCSDVEQTN---INDKLFLDLANRFWPGKLTLIYNKES----------------YRIP 94 Query: 121 C-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSS-SICKEIPLIIDGGISKIGLES 178 + K+ + G + SAN S + + + +++ G + S Sbjct: 95 NSPYILKIAKICGK-IYSSSANISDLNPYKTWEQYYNDPYFNQNNDVVVIKGETTSEQGS 153 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAIS 207 TI ++ +ILR G L ++LK ++ Sbjct: 154 TIYDLDSN---KILREGELS-QSLKEFLA 178 >gi|254468103|ref|ZP_05081509.1| putative yrdC domain protein [beta proteobacterium KB13] gi|207086913|gb|EDZ64196.1| putative yrdC domain protein [beta proteobacterium KB13] Length = 179 Score = 96.7 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 38/170 (22%), Positives = 71/170 (41%), Gaps = 5/170 (2%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81 G + PTE+ +GL +N A++++ IKKR + + ++ S+ +L Sbjct: 13 GKILIHPTESCFGLGCHPKNINALKKILIIKKRSKNKSFLLISDKVQKFFRYVSLSEKNL 72 Query: 82 HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140 WP + + L + + R+P K+ +E P+ SA Sbjct: 73 QHISD-WPKHTSYLF--KKNLRSPMLLSPKKEKIGCRIPDHKKIKRTLENLNFPITSTSA 129 Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 N SGQIS+ +H K +I++ + STI++ + +K +R Sbjct: 130 NFSGQISLKFWRHCCRKFSSKSC-IIMNERVGNYKRPSTIIDFETKKIIR 178 >gi|307110462|gb|EFN58698.1| hypothetical protein CHLNCDRAFT_17175 [Chlorella variabilis] Length = 215 Score = 96.7 bits (240), Expect = 5e-18, Method: Composition-based stats. Identities = 42/209 (20%), Positives = 77/209 (36%), Gaps = 21/209 (10%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETV-YGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHV 64 +D+ L E L G IPT T D N +A+ +L EIK R + + Sbjct: 9 SDAWRLEPVIEALKEGAVGIIPTGTCNLAFVCDLGNRSAVEKLLEIKGARGSQR-MSILC 67 Query: 65 SDISMVKKH--------ASVDPLSLHLAKLFWPGPLTLVLDL-----LSTTDIHPLSTAN 111 + V + A P L K PGP T +L + T++ + Sbjct: 68 RSLQDVDAYTQGWPPSRAPGQPDMFKLVKRVLPGPYTFILLAGKELPKALTNVDKGKSKK 127 Query: 112 LKTACFRVP-CGFTKKLIETYGHPLA-IPSANRSGQISIT-NVKHILSSSICKE-IPLII 167 + R+P + +++ PL +A G +I +L + + ++ Sbjct: 128 RREVGVRLPDDAVAQAILQQLDRPLLCSTAATGPGDGAIMGQDAAVLMDRYGRAGLDFVV 187 Query: 168 DGGISKIGLESTIVNVQCEKKVRILRPGG 196 D G ++ ST+++ + V + + G Sbjct: 188 DAGP-RLAEGSTVIDCTGAEPVVLRQGKG 215 >gi|284931148|gb|ADC31086.1| Putative translation factor/ribosome maturation factor (Sua5) [Mycoplasma gallisepticum str. F] Length = 182 Score = 96.7 bits (240), Expect = 5e-18, Method: Composition-based stats. Identities = 49/209 (23%), Positives = 88/209 (42%), Gaps = 33/209 (15%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M+++ + + ++ + +PT+TV+G+ S+N ++Y+ KKR L Sbjct: 1 MKVLEF--ERDFDEIVKAINDDKLVILPTDTVFGVICKSKN-----KIYDFKKRDLNKKL 53 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 I SD+ D L L LA FWPG LTL+ + S +R+P Sbjct: 54 IYFCSDVEQTN---INDKLFLDLANRFWPGKLTLIYNKES----------------YRIP 94 Query: 121 C-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKE-IPLIIDGGISKIGLES 178 + K+ + G + SAN S + + S + +++ G + S Sbjct: 95 NSPYILKIAKICGK-IYSSSANISNLNPYKTWEQYYNDSYFNQNNDVVLIRGETTSEQGS 153 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAIS 207 TI ++ +ILR G L ++LK ++ Sbjct: 154 TIYDLDSN---KILREGELS-QSLKEFLA 178 >gi|253574246|ref|ZP_04851588.1| Sua5/YciO/YrdC/YwlC family protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251846723|gb|EES74729.1| Sua5/YciO/YrdC/YwlC family protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 80 Score = 96.3 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 34/62 (54%) Query: 261 ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 A +L+L + +L+ AA L+ ++ D+ G + I + P GLG A+ NRL +AA Sbjct: 6 YRADCALSLGREDELETAAHRLYAALRRFDECGVTYILAEACPEEGLGSAVMNRLLKAAG 65 Query: 321 PR 322 R Sbjct: 66 HR 67 >gi|27904913|ref|NP_778039.1| hypothetical protein bbp438 [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|46397179|sp|Q89A89|RIMN_BUCBP RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|27904311|gb|AAO27144.1| conserved hypothetical protein [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 186 Score = 95.9 bits (238), Expect = 7e-18, Method: Composition-based stats. Identities = 46/194 (23%), Positives = 78/194 (40%), Gaps = 14/194 (7%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M I+S L + + L L IA PTE+V GL + + A++ L ++KKR Sbjct: 1 MNILS------LSECVDRLRKNLVIAYPTESVLGLGCNPESIDAVKVLLKLKKRKLNKGF 54 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 I S + ++ + S LS++ K+ WP +T +L + + + T Sbjct: 55 ILVASHFNQIRSYISESKLSIYHKKILYSSWPDTITYLLP--AKSFVPDWLTGRSNFLGI 112 Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 R+ KL +G + SAN SG+ + L I+ G + Sbjct: 113 RISAHNGINKLCSAFGKAIISTSANISGRNPCRTYEEFLKQF--GTTVPILCGPLGTRKN 170 Query: 177 ESTIVNVQCEKKVR 190 S I+N+ +R Sbjct: 171 PSKILNIINGSLIR 184 >gi|315426713|dbj|BAJ48338.1| translation factor [Candidatus Caldiarchaeum subterraneum] Length = 132 Score = 95.1 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 43/134 (32%), Positives = 67/134 (50%), Gaps = 5/134 (3%) Query: 77 DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI-ETYGHPL 135 L A WPG +T+V+ T++ L TA KT R+P LI + PL Sbjct: 3 TEEELEAAIRLWPGAVTIVM--AKKTELPELVTAGEKTVGVRMPAHVVPLLIMQKAHRPL 60 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 SAN S + S T + I SS + K + +++D G + L ST+V +Q + +V +LR G Sbjct: 61 VGTSANISDEPSATTIDQIPSSVLEK-VDVVVDAGRTHHLLPSTVVKIQ-DGQVVVLREG 118 Query: 196 GLEIETLKRAISVE 209 L E +++ I + Sbjct: 119 VLSREEIEKRIGLR 132 >gi|326513584|dbj|BAJ87811.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 270 Score = 95.1 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 29/142 (20%), Positives = 48/142 (33%), Gaps = 15/142 (10%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L + +++G IPT+TVY + D N +I RL IK PL + + Sbjct: 108 LDPVVDLINSGAVGVIPTDTVYSIVCDLSNNDSIERLRRIKGIVNSKPLSILCRSLRDID 167 Query: 72 KHASVDPLS--------LHLAKLFWPGPLTLVLDLLSTTDIHPLST------ANLKTACF 117 + + P K PGP T +L + A + Sbjct: 168 TYTTGFPQGTNQGQANIFRAVKRILPGPYTFILPATKELPKQCIKHGSSTRYAKRRQVGV 227 Query: 118 RVP-CGFTKKLIETYGHPLAIP 138 R+P + +++ PL Sbjct: 228 RMPDDPICQAILQNLEEPLICT 249 >gi|295698621|ref|YP_003603276.1| protein YrdC [Candidatus Riesia pediculicola USDA] gi|322967359|sp|D4G8K6|RIMN_RIEPU RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN gi|291157258|gb|ADD79703.1| protein YrdC [Candidatus Riesia pediculicola USDA] Length = 187 Score = 95.1 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 33/144 (22%), Positives = 54/144 (37%), Gaps = 11/144 (7%) Query: 18 FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77 L G IA P E+V+ L D N I++L +K R I + + K+ Sbjct: 12 ALKNGEIIAYPAESVFSLGCDPDNDKTIQKLLTLKNRSWEKGFILVSDNYDKLTKYIDDK 71 Query: 78 PLSLHLAKL------FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIET 130 L+ ++ F+P T V+ + + L T K+ R+ + K + Sbjct: 72 KLTKFQKRIISFHDTFFPR--TWVVP--AKKCVSKLITGQFKSIAIRISRFEYIKNICLN 127 Query: 131 YGHPLAIPSANRSGQISITNVKHI 154 YG P+ SAN S + Sbjct: 128 YGKPIISTSANISNDAPCRTKNEV 151 >gi|157375042|ref|YP_001473642.1| (NiFe) hydrogenase maturation protein HypF [Shewanella sediminis HAW-EB3] gi|157317416|gb|ABV36514.1| (NiFe) hydrogenase maturation protein HypF [Shewanella sediminis HAW-EB3] Length = 783 Score = 95.1 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 44/189 (23%), Positives = 76/189 (40%), Gaps = 22/189 (11%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 AL + + L G +AI GL D+ N A++RL E K+RP PL VS Sbjct: 220 ALTETVQRLLQGEIVAIK-----GLGGFHLVCDATNHDAVQRLRERKRRP-GKPLAVMVS 273 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS-TTDIHPLSTANLKTACFRVP-CGF 123 + M K + P+T++ S T ++ P + +P Sbjct: 274 SLEMAKSIVTGSQFEWDQLTSI-ERPITIMTKNRSNTVNLSPAIAPGIDKLGVFLPYTPL 332 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 L++ P+ SANRSG+ I + K I+ + + + + I+D I+N Sbjct: 333 HSLLLKELDIPIVATSANRSGEPIICDGKEII-AQLSEVVDSILDHNRP-------IINA 384 Query: 184 QCEKKVRIL 192 + ++ + Sbjct: 385 CDDSVIQCI 393 >gi|281207352|gb|EFA81535.1| brix domain-containing protein [Polysphondylium pallidum PN500] Length = 592 Score = 94.7 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 2/101 (1%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 I+ D + +A + +G ++ PTETVYGL ++ + A+ ++ K RP +P+I Sbjct: 88 IVDSLDDQVMLEAANKIKSGGLVSFPTETVYGLGANAFDTDAVLSIFTAKGRPLTDPVIV 147 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD 103 H+ + VK+H L + P +L + T D Sbjct: 148 HLQN--SVKQHQQGQEAPGQLLTHYAPDIQAYILKDIITDD 186 Score = 53.9 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 51/142 (35%), Gaps = 38/142 (26%) Query: 221 QSPGMLKSHYAPRSQVRLRAIHVNPR-------------------------------EAL 249 ++PG L +HYAP Q + + Sbjct: 161 EAPGQLLTHYAPDIQAYILKDIITDDQNNNSNLNSNNSNNSNNNNNNNNNIEYKLSECVF 220 Query: 250 IRFGNVPIKNIENAIISL-NLSKTGKLKEAAFNLFNYMKIADD-SGASSIAFSSIPNH-- 305 + FG ++++ ++ +LS ++ EAA LF+ ++ ++ A I + + Sbjct: 221 VDFGKNLNDSLQSKFLAYRDLSSNNQVLEAANCLFSTLRWSESVQDAKIILLPDLRSDKT 280 Query: 306 ---GLGIAINNRLERAAAPRNQ 324 A+ +R+ RAA+ + Sbjct: 281 KSLEHSDAVFDRIYRAASGKTA 302 >gi|149920237|ref|ZP_01908709.1| Sua5/YciO/YrdC/YwlC [Plesiocystis pacifica SIR-1] gi|149819003|gb|EDM78442.1| Sua5/YciO/YrdC/YwlC [Plesiocystis pacifica SIR-1] Length = 217 Score = 94.4 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 45/215 (20%), Positives = 90/215 (41%), Gaps = 10/215 (4%) Query: 1 MQIMSI---TDSNALRK-ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56 M+ + + TD++AL + L+ G + +P Y + D N +A+ L K+R Sbjct: 1 METIKLDDTTDTSALAQRLAATLEEGGLVCLPCNGSYRIVADLTNTSAVLDLMVSKQRTR 60 Query: 57 MNPLICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTD--IHPLSTANLK 113 P + + + +++ A++ + LA WP PLT+ + L + Sbjct: 61 KAPALVFIDSHARLEEIDAALPEPARVLADALWPKPLTIRVQLGDALPRKVKKELGGKKA 120 Query: 114 TACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172 RVP + G PL + SANR + ++ + S + + +D G Sbjct: 121 KVGVRVPADALARATAAALGRPLLVSSANRQKKAGESSPAQV-RRSFGARVDIFVDAGDI 179 Query: 173 KIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS 207 + ST++++ + + I R G +E L+ ++ Sbjct: 180 QKKSASTVIDI-VDGALSIERQGTVEHAELESLLA 213 >gi|116075870|ref|ZP_01473129.1| hypothetical protein RS9916_40431 [Synechococcus sp. RS9916] gi|116067185|gb|EAU72940.1| hypothetical protein RS9916_40431 [Synechococcus sp. RS9916] Length = 217 Score = 93.6 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 50/190 (26%), Positives = 76/190 (40%), Gaps = 15/190 (7%) Query: 16 CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA- 74 L AG +PT+T+ L + R+++ +K+RP+ PLI ++ + Sbjct: 22 ARCLLAGGAGLMPTDTLPALIALPGHA---RQIWTLKQRPSEKPLILMAANAEALLALVR 78 Query: 75 -SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA---NLKTACFRVP-CGFTKKLIE 129 + LA+L WPG LT+VL + A T RVP C ++L+ Sbjct: 79 PEAQAAARPLAQLHWPGALTMVLPIAGDALAQSWLRALNPGATTLGLRVPACAQARQLLA 138 Query: 130 TYGHPLAIPSANRSGQ--ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 G PLA SAN SG H + L + GL ST++ Q Sbjct: 139 RTG-PLATTSANPSGDAAALTAAQAHCYFPDL---PLLGPTPWPAPQGLASTVLAWQDSG 194 Query: 188 KVRILRPGGL 197 + LR G + Sbjct: 195 SWQTLRAGAV 204 >gi|110003951|emb|CAK98291.1| conserved hypothetical protein [Spiroplasma citri] Length = 179 Score = 93.6 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 40/180 (22%), Positives = 69/180 (38%), Gaps = 11/180 (6%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 M++ ++ D + +L I +PT+T+YG+ +P A R++++K R L Sbjct: 1 MKVYTVKDRKEI--IASYLAE-KVIIVPTDTIYGMTCIISSPVAKARIFKVKGRSEKMYL 57 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 VS + M K L L K +T++ ++ + T + T R+ Sbjct: 58 SVIVSSVRMAKNFIDFPREDLKLFKKN--ETITIIGNIKDDINKLYNITED-NTIGIRIT 114 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 K I P+ S N SGQ N + + +I+D G S I Sbjct: 115 KSKWLKKIINKVGPIYGTSVNISGQ----NYAKEFNDLQKFNVDIIVDSGYLD-NRPSKI 169 >gi|284929281|ref|YP_003421803.1| putative translation factor [cyanobacterium UCYN-A] gi|284809725|gb|ADB95422.1| putative translation factor (SUA5) [cyanobacterium UCYN-A] Length = 134 Score = 93.2 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 8/123 (6%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 K + L G ++ PT+T+ LA +N ++ ++ +KKR PLI S V K Sbjct: 7 DKLVQGLFEGKVVSFPTDTIPALATLPQNASS---IFALKKRSFQKPLILMCSSSENVWK 63 Query: 73 HASVDPLSLH----LAKLFWPGPLTLVLDLLST-TDIHPLSTANLKTACFRVPCGFTKKL 127 + + L +A +WPGPLTLVL + +I+ + + KT R+P F + Sbjct: 64 YTQGNSEELRNWKNIAYRYWPGPLTLVLPASESIININTNNLIDSKTIGIRIPDCFVAQR 123 Query: 128 IET 130 I Sbjct: 124 ILQ 126 >gi|296104313|ref|YP_003614459.1| hypothetical protein ECL_03976 [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058772|gb|ADF63510.1| hypothetical protein ECL_03976 [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 197 Score = 92.8 bits (230), Expect = 6e-17, Method: Composition-based stats. Identities = 43/196 (21%), Positives = 77/196 (39%), Gaps = 8/196 (4%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + KA L I IPT+T + LA D +P A+ +L +K+ P + +++ + Sbjct: 4 IDKAITVLRNSGIILIPTDTHFALAADPYSPDAVEKLTLLKRSPCTREMTFCFCELADIW 63 Query: 72 KHASVDPLSLHLAKLF----WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 + V P ++ WPG L + L D P + L C + + + Sbjct: 64 EWVDVSPWQRSKIEMLSRACWPGTLKISLRKKQRADFLPGAGDILPVVCVK--NSQMRTI 121 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS-KIGLESTIVNVQCE 186 I G PL + A + + + L++ +T +++ + Sbjct: 122 ISRLGRPLVVIPAGYPQDEGDLVSFTLAREDMGDCVDLVVPSNCKNPSRTATTHISLL-D 180 Query: 187 KKVRILRPGGLEIETL 202 KV ILR G L+I +L Sbjct: 181 DKVSILRHGELDISSL 196 >gi|332749609|gb|EGJ80026.1| ribosome maturation factor [Shigella flexneri K-671] Length = 106 Score = 92.8 bits (230), Expect = 6e-17, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 41/80 (51%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 +A+ A + L+ IA PTE V+G+ D + TA+ RL E+K+RP LI ++ Sbjct: 8 DAIAAAIDVLNEKRVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQ 67 Query: 70 VKKHASVDPLSLHLAKLFWP 89 +K + L+ + +P Sbjct: 68 LKPYIDDTMLTDVQRETIFP 87 >gi|118602506|ref|YP_903721.1| translation factor SUA5 [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567445|gb|ABL02250.1| translation factor SUA5 [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 178 Score = 92.8 bits (230), Expect = 6e-17, Method: Composition-based stats. Identities = 39/179 (21%), Positives = 71/179 (39%), Gaps = 7/179 (3%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 R A FL G I+ PT+T+ G+ + +++ R+ ++K+R + LI SD+ Sbjct: 6 RLAASFLKTGGVISNPTDTIQGMTCLPKFESSMARILQLKRRSSAKGLILLASDMHYFID 65 Query: 73 HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY 131 + L + + P T +L + L T + T R+ L Sbjct: 66 YVEDIALLVDVVINV--QPTTYLL--KANEYTSELLTGSFDTIALRLTNNQLITDLCVAT 121 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 L SAN + + S + L ++ II + S I+++Q +K+R Sbjct: 122 NSALVSSSANITNKRSAITMLD-LKEFFNNKLDFII-PPKTYNTQASKIIDLQTREKIR 178 >gi|218961320|ref|YP_001741095.1| putative Protein-tyrosine-phosphatase [Candidatus Cloacamonas acidaminovorans] gi|167729977|emb|CAO80889.1| putative Protein-tyrosine-phosphatase [Candidatus Cloacamonas acidaminovorans] Length = 394 Score = 92.4 bits (229), Expect = 9e-17, Method: Composition-based stats. Identities = 44/204 (21%), Positives = 81/204 (39%), Gaps = 13/204 (6%) Query: 29 TETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFW 88 T +++G+ + I R+ +K+R I + D+S++++ + L +W Sbjct: 58 TGSMWGIGCRLSSSETIARIETLKQRADKQGFIALIPDMSVLEQD-KIPAPIRPLMNQYW 116 Query: 89 PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPLAIPSANRSGQIS 147 PG LTL+ + + N RVP + LI G PL S N SG + Sbjct: 117 PGNLTLIFNY-DDPQFAGIKRGNK--VALRVPSDPALRALISLLGEPLISTSVNVSGLMP 173 Query: 148 ITNVKHILS--SSICKEIPLIIDGGISKIGLESTIVNVQCEKK------VRILRPGGLEI 199 N + I+ S L + + STI+ ++ ++ LR G + Sbjct: 174 EENYERIVRNYDSWFDFALLPSSREMKRPSEPSTIIEYIGSEESGSNDDIKCLREGSIPF 233 Query: 200 ETLKRAISVELEYCVDETSTPQSP 223 +K+A + + V + +SP Sbjct: 234 YEIKQAFQLPVVMFVCSANICRSP 257 >gi|167561725|ref|ZP_02354641.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia oklahomensis EO147] Length = 144 Score = 92.0 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 33/138 (23%), Positives = 59/138 (42%), Gaps = 11/138 (7%) Query: 194 PGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQV------RLRAIHVNPR 246 PG + + + + V + + P++ G LK+HYAPR+ + RL + R Sbjct: 1 PGRVTPQQIADVLGVAPRLPDGGDATAPRASGTLKAHYAPRTPLALAPFERLERLLSAAR 60 Query: 247 EALIRFGNVPIKNIENAIISLN----LSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302 +A R V + A + ++ A L+ ++ D + + I + Sbjct: 61 DAGERIALVARASRAGAWAHTDGVHFVAAPEDPLVYARELYGLLRALDRAQVARILVEKL 120 Query: 303 PNHGLGIAINNRLERAAA 320 P+ IA+N+RL RAAA Sbjct: 121 PDTAEWIAVNDRLGRAAA 138 >gi|127512688|ref|YP_001093885.1| (NiFe) hydrogenase maturation protein HypF [Shewanella loihica PV-4] gi|126637983|gb|ABO23626.1| (NiFe) hydrogenase maturation protein HypF [Shewanella loihica PV-4] Length = 781 Score = 92.0 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 44/174 (25%), Positives = 68/174 (39%), Gaps = 24/174 (13%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 AL A E L G +AI GL D+ N A+ +L K+RPA P + Sbjct: 205 ALDLAVELLAQGKTLAIK-----GLGGFHLVCDATNHEAVMQLRSRKQRPA-KPFAVMCA 258 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVL----------DLLSTTDIHPLSTANLKTA 115 + M K A L + P+TL+ D LS+ + P + Sbjct: 259 SLPMAKTLACGSDAEWQLLQSA-ERPITLLQRALNKDESSSDALSSYVLSPAVAPGIDRL 317 Query: 116 CFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 +P + L+ PL SANRSG+ IT+ + I + + + ++D Sbjct: 318 GLFLPYTPLHQLLLSRLNRPLVATSANRSGEPIITHAEQIF-ERLGEVVDAVLD 370 >gi|254425585|ref|ZP_05039302.1| (NiFe) hydrogenase maturation protein HypF [Synechococcus sp. PCC 7335] gi|196188008|gb|EDX82973.1| (NiFe) hydrogenase maturation protein HypF [Synechococcus sp. PCC 7335] Length = 751 Score = 92.0 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 41/151 (27%), Positives = 65/151 (43%), Gaps = 13/151 (8%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 L+KA L G +AI GL D+RN AI RL ++K+RP PL + Sbjct: 190 LQKAIASLKQGKIVAIK-----GLGGFQLLVDARNNEAITRLRQLKQRP-HKPLALICAT 243 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125 + ++HA + ++ L PGP+ L+ +++ L +P Sbjct: 244 FAAARRHAQISEVAAALLTAA-PGPIVLLPRRQDVSELSRLIAPQSPFLGIMLPTTPLHY 302 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILS 156 L+ YGHP+ S N SG+ T+ + L Sbjct: 303 LLLGAYGHPVVATSGNVSGEPICTDNRAALE 333 >gi|330953601|gb|EGH53861.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae Cit 7] Length = 142 Score = 91.7 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 6/136 (4%) Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPC 121 D+S + A VD + K PGP T +L+ +T ++ L +T RVP Sbjct: 1 MCCDLSQLGLFAKVDTGAFRALKAHTPGPYTFILN--ATREVPRLVLHPKRRTIGLRVPS 58 Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 + L+E G PL S G + + + + ++ LIIDGGI I ST+ Sbjct: 59 HPIAQALLEQLGEPLMSVSLIMPGDSVPLSDPYEMRQILEHQVDLIIDGGIGGIS-ASTV 117 Query: 181 VNVQCEKKVRILRPGG 196 +N+ E + +++R G Sbjct: 118 INL-AEGEPQVVRVGC 132 >gi|6513939|gb|AAF14843.1|AC011664_25 hypothetical protein [Arabidopsis thaliana] Length = 297 Score = 91.3 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 40/211 (18%), Positives = 76/211 (36%), Gaps = 33/211 (15%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 DS L+ + L G IPT+TVY +A D +N +A+ RL H++ Sbjct: 79 DSWKLQPVIDLLKQGAVGVIPTDTVYAIACDCKNHSAVERLRS------------HLASY 126 Query: 68 S------MVKKHASVDPLSLHLAKLFWPGP----LTLVLDLLSTTDIH-------PLSTA 110 + + + A + + + + F T +L + A Sbjct: 127 AVPYEILTLLQWAFLVVMVMVMLTFFELSSNAYLYTFILTASKELPKQCVGYGTTSVKYA 186 Query: 111 NLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKE-IPLIID 168 + K R+ + +++ PL S + + E + ++D Sbjct: 187 SRKNVGVRISDDALCQAILQQMDAPLICTSVKGPKENEWMIDPTAIGDIYGPEGLDFVVD 246 Query: 169 GGISKIGLESTIVNVQCEKKVRILRPGGLEI 199 GGI ++ STIV++ +++R G I Sbjct: 247 GGI-RVAEPSTIVDMTGPYP-KVIREGKGPI 275 >gi|15829084|ref|NP_326444.1| hypothetical protein MYPU_6130 [Mycoplasma pulmonis UAB CTIP] gi|14090028|emb|CAC13786.1| conserved hypothetical protein [Mycoplasma pulmonis] Length = 154 Score = 91.3 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 37/160 (23%), Positives = 63/160 (39%), Gaps = 20/160 (12%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78 ++ + T+T+ GL + + ++YEIKKRP +I V ++ + + + Sbjct: 3 INDDDLLVFTTDTLIGLGGKVSDVI-LEKIYEIKKRPIDKKMIILVGSLAQAQSFSQWNL 61 Query: 79 LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIP 138 + A+ +WPG TL+++ FR+P PL Sbjct: 62 KANKQAQKYWPGATTLIVNDQ----------------GFRMPKNKALCKFLIEQGPLYTT 105 Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 SAN SG +I + I +I ID G G+ S Sbjct: 106 SANLSGFENIKTLDEA--KKIFPQIKHFIDFGKG-SGIPS 142 >gi|218461290|ref|ZP_03501381.1| translation factor sua5 protein [Rhizobium etli Kim 5] Length = 91 Score = 90.9 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 48/77 (62%), Positives = 55/77 (71%) Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305 EALI FG + +A I L+LS G L EAA NLF+YMK AD SG SSIAFS IP+ Sbjct: 1 GEALIAFGGAAVAGARDARIVLDLSPRGDLAEAAANLFDYMKRADASGVSSIAFSPIPDD 60 Query: 306 GLGIAINNRLERAAAPR 322 GLG AIN+RL+RAAAPR Sbjct: 61 GLGEAINDRLQRAAAPR 77 >gi|303327758|ref|ZP_07358198.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio sp. 3_1_syn3] gi|302862119|gb|EFL85053.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio sp. 3_1_syn3] Length = 82 Score = 90.9 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 33/73 (45%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 L A L G + PTET YGL + + A+ R+Y++K+RP PL +D + Sbjct: 10 DLEAAARCLRRGGVVIFPTETFYGLGCLAADAAAVGRIYQLKRRPVQRPLPLLAADAAQA 69 Query: 71 KKHASVDPLSLHL 83 ++ L Sbjct: 70 GSVVRLEAAPPEL 82 >gi|172035978|ref|YP_001802479.1| putative YrdC-like RNA-binding protein [Cyanothece sp. ATCC 51142] gi|171697432|gb|ACB50413.1| putative YrdC-like RNA-binding protein [Cyanothece sp. ATCC 51142] Length = 215 Score = 90.5 bits (224), Expect = 3e-16, Method: Composition-based stats. Identities = 46/191 (24%), Positives = 85/191 (44%), Gaps = 7/191 (3%) Query: 16 CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75 ++L+ G + +PT+TVY L V+ P AI +L +IKK PL + ++ A Sbjct: 21 IDYLEQGEVVLLPTDTVYTLVVNGLKPKAIAKLRKIKKFGQDQPLGILTRG-NKAEEVAI 79 Query: 76 VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPL 135 ++ + + F P P+T+++ + ++ T P F L+E PL Sbjct: 80 LNTSAKRMISHF-PYPITMIVQ--AHPQLNREITQGFSKIFLSCPDPFIYDLVEQIPFPL 136 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 +A G+ ++ IPLI+DGG S+ G T+++ E I+ G Sbjct: 137 VSATAKVGGEPIVSFDAA--QRYFRDIIPLIVDGGRSRYGRRGTLIDFTVEYP-TIMNFG 193 Query: 196 GLEIETLKRAI 206 + ++ L+ + Sbjct: 194 PISVDDLRPLL 204 >gi|330955918|gb|EGH56178.1| SUA5/yciO/yrdC [Pseudomonas syringae Cit 7] Length = 77 Score = 90.1 bits (223), Expect = 4e-16, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 34/76 (44%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + S +++A + + AG IA PTE V+GL D + A+ RL IK RP LI Sbjct: 1 MVSSWRVQQAAQDIRAGAVIAYPTEAVWGLGCDPWDEEAVYRLLAIKSRPVEKGLILIAD 60 Query: 66 DISMVKKHASVDPLSL 81 +I P Sbjct: 61 NIRQFDFLFEDFPELW 76 >gi|193216888|ref|YP_002000130.1| hypothetical protein MARTH_orf655 [Mycoplasma arthritidis 158L3-1] gi|193002211|gb|ACF07426.1| conserved hypothetical protein [Mycoplasma arthritidis 158L3-1] Length = 157 Score = 89.7 bits (222), Expect = 5e-16, Method: Composition-based stats. Identities = 40/167 (23%), Positives = 60/167 (35%), Gaps = 30/167 (17%) Query: 29 TETVYGLAVDSRNPTAIRR-----LYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHL 83 T+T+ GL + R +YEIK R LI VS I + + L Sbjct: 13 TDTIIGLGGK------VSRRISDLIYEIKGRDPRKKLIILVSSIKQARAFKEWTSEAEAL 66 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRS 143 A FWPG TLV++ FR+P P+ + S N S Sbjct: 67 ANKFWPGATTLVVNDQ----------------GFRMPNQPKLLEFLEANGPVYMTSCNIS 110 Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 ++ ++ EI + G + G S I+ V+ K +R Sbjct: 111 NSPVCQTIEEA--KNVFPEISNVYYFGKT-SGTPSQIIRVEDHKILR 154 >gi|325142314|gb|EGC64727.1| protein yrdC [Neisseria meningitidis 961-5945] Length = 142 Score = 89.7 bits (222), Expect = 5e-16, Method: Composition-based stats. Identities = 29/142 (20%), Positives = 55/142 (38%), Gaps = 5/142 (3%) Query: 51 IKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA-KLFWPGPLTLVLDLLSTTDIHPLST 109 +KKRP +I + ++ + +L + WP P T +L + + L Sbjct: 4 LKKRPQHKGMIVIGNQFEQLQPLLQMPSENLQDMLRKEWPAPKTFLLS-AKSCVLPELRG 62 Query: 110 ANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 RVP ++L + PL S NR+G+ + + + I+ Sbjct: 63 KQRSKLAVRVPAHVGARRLCQALQTPLVSTSCNRAGKRACRTEREVRRQF--GRDVWIVG 120 Query: 169 GGISKIGLESTIVNVQCEKKVR 190 G I + S I++ + K++R Sbjct: 121 GRIGRQKSPSQIIDGETGKRLR 142 >gi|330956061|gb|EGH56321.1| SUA5/yciO/yrdC [Pseudomonas syringae Cit 7] Length = 82 Score = 89.7 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 34/76 (44%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + S +++A + + AG IA PTE V+GL D + A+ RL IK RP LI Sbjct: 1 MVSSWRVQQAAQDIRAGAVIAYPTEAVWGLGCDPWDEEAVYRLLAIKSRPVEKGLILIAD 60 Query: 66 DISMVKKHASVDPLSL 81 +I P Sbjct: 61 NIRQFDFLFEDFPELW 76 >gi|315267264|gb|ADT94117.1| (NiFe) hydrogenase maturation protein HypF [Shewanella baltica OS678] Length = 838 Score = 89.7 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 45/194 (23%), Positives = 79/194 (40%), Gaps = 22/194 (11%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLI 61 TD L+ A + L G +AI GL D+RN A+ +L K+R A PL Sbjct: 263 TDLAVLKAAADRLHQGQILAIK-----GLGGFHLICDARNDKAVNKLRLRKQRQA-KPLA 316 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120 ++DI M + + + + P+ +++ + D+ NL +P Sbjct: 317 VMMADIQMAQHYVTGTDAEWQVL-SSQERPI-VLMSSRAEHDLSLAVAPNLNKLGVFLPY 374 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L+ + PL SAN SG+ ITN ++ + + I+D I Sbjct: 375 TPLHHLLLGLFKGPLVATSANVSGEPIITNCDELIRH-LSHVVDAIVDHNRP-------I 426 Query: 181 VNVQCEKKVRILRP 194 +N + V++++P Sbjct: 427 INGCDDSVVQVIQP 440 >gi|160875032|ref|YP_001554348.1| (NiFe) hydrogenase maturation protein HypF [Shewanella baltica OS195] gi|160860554|gb|ABX49088.1| (NiFe) hydrogenase maturation protein HypF [Shewanella baltica OS195] Length = 840 Score = 89.7 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 45/194 (23%), Positives = 79/194 (40%), Gaps = 22/194 (11%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLI 61 TD L+ A + L G +AI GL D+RN A+ +L K+R A PL Sbjct: 265 TDLAVLKAAADRLHQGQILAIK-----GLGGFHLICDARNDKAVNKLRLRKQRQA-KPLA 318 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120 ++DI M + + + + P+ +++ + D+ NL +P Sbjct: 319 VMMADIQMAQHYVTGTDAEWQVL-SSQERPI-VLMSSRAEHDLSLAVAPNLNKLGVFLPY 376 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L+ + PL SAN SG+ ITN ++ + + I+D I Sbjct: 377 TPLHHLLLGLFKGPLVATSANVSGEPIITNCDELIRH-LSHVVDAIVDHNRP-------I 428 Query: 181 VNVQCEKKVRILRP 194 +N + V++++P Sbjct: 429 INGCDDSVVQVIQP 442 >gi|269115162|ref|YP_003302925.1| hypothetical protein MHO_3870 [Mycoplasma hominis] gi|118406895|gb|ABK81654.1| conserved hypothetical protein [Mycoplasma hominis ATCC 23114] gi|268322787|emb|CAX37522.1| Conserved hypothetical protein [Mycoplasma hominis ATCC 23114] Length = 155 Score = 89.0 bits (220), Expect = 9e-16, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 60/162 (37%), Gaps = 20/162 (12%) Query: 29 TETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFW 88 T+TV G+ + +YEIK R LI VS I ++ + + AK +W Sbjct: 13 TDTVLGIGG-PVSKEVEDLIYEIKGRDRNKKLIILVSSIKQARQFKEWNSQADEFAKKYW 71 Query: 89 PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISI 148 PG T+V++ FR+P P+ + S N S Sbjct: 72 PGATTIVVNNQ----------------GFRMPNQKKLLEYIEVNGPIYMTSCNLSNAPVC 115 Query: 149 TNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 +++ + E+ + + G S I+ V+ + +R Sbjct: 116 KTIENA--KQLFPEVTNVYNFGP-MTQKPSQIIRVEDGEILR 154 >gi|330953600|gb|EGH53860.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae Cit 7] Length = 91 Score = 89.0 bits (220), Expect = 9e-16, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 29/65 (44%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +++A E + AG + PT++ Y L + +AI R+ +++ + D+S Sbjct: 27 PRLIKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLS 86 Query: 69 MVKKH 73 + Sbjct: 87 QLGLF 91 >gi|298370470|ref|ZP_06981786.1| ribosome maturation factor rimN [Neisseria sp. oral taxon 014 str. F0314] gi|298281930|gb|EFI23419.1| ribosome maturation factor rimN [Neisseria sp. oral taxon 014 str. F0314] Length = 142 Score = 89.0 bits (220), Expect = 9e-16, Method: Composition-based stats. Identities = 28/142 (19%), Positives = 54/142 (38%), Gaps = 5/142 (3%) Query: 51 IKKRPAMNPLICHVSDISMVKKHASVD-PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLST 109 +KKRP +I S + ++ ++ + + WP P T +L + + L Sbjct: 4 LKKRPQDKGMIVIGSRLEQLQSLLERPSEKTIFMLEREWPAPKTFLLPSRAGI-LPLLRG 62 Query: 110 ANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 RVP ++L + G PL S NR+G+ + + ++ Sbjct: 63 KGRNKLAVRVPAHQGARRLCKVLGTPLVSTSCNRAGKRPCKTEREVRRQF--GRKVWVVS 120 Query: 169 GGISKIGLESTIVNVQCEKKVR 190 G I S I++ + ++R Sbjct: 121 GLIGGQEKPSQIIDGETGIRLR 142 >gi|15639175|ref|NP_218621.1| hypothetical protein TP0182 [Treponema pallidum subsp. pallidum str. Nichols] gi|189025415|ref|YP_001933187.1| hypothetical protein TPASS_0182 [Treponema pallidum subsp. pallidum SS14] gi|3322447|gb|AAC65168.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum str. Nichols] gi|189017990|gb|ACD70608.1| hypothetical protein TPASS_0182 [Treponema pallidum subsp. pallidum SS14] Length = 259 Score = 89.0 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 45/186 (24%), Positives = 69/186 (37%), Gaps = 28/186 (15%) Query: 24 PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---------AMNPLICHVSDISMVKKHA 74 +A+PT+TVYG + P A+ L +K R P I ++D V + Sbjct: 70 LVALPTDTVYGFSG--LVPHAVPDLICLKARGCTETEGNRREGYPFIALLADPQDVVVYT 127 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGH 133 L + WPGP T VL + T FR P + +I G Sbjct: 128 G-TRLPAEF-RALWPGPYTFVLRMQDGA-----------TQAFRCPADLWLRSVIRAVGG 174 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 + SANR G+ + K + L +D G G S ++++ R+LR Sbjct: 175 AIFSTSANRHGEP-PLQDAQDIDHIFGKHLALTVDAGP-LTGSPSAVIDLT-HPVPRVLR 231 Query: 194 PGGLEI 199 G + Sbjct: 232 AGAAPL 237 >gi|289808082|ref|ZP_06538711.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 77 Score = 88.6 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 30/65 (46%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 + L+ IA PTE V+G+ D + TA+ RL +K+RP LI + +K Sbjct: 11 AAVVDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIAASFEQLKP 70 Query: 73 HASVD 77 + Sbjct: 71 YIDDS 75 >gi|153000435|ref|YP_001366116.1| (NiFe) hydrogenase maturation protein HypF [Shewanella baltica OS185] gi|151365053|gb|ABS08053.1| (NiFe) hydrogenase maturation protein HypF [Shewanella baltica OS185] Length = 838 Score = 88.2 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 47/194 (24%), Positives = 79/194 (40%), Gaps = 22/194 (11%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLI 61 TD L+ A L G +AI GL D+RN A+ L K+R A PL Sbjct: 263 TDLAVLKAAANRLHQGQILAIK-----GLGGFHLICDARNDKAVNTLRLRKQRQA-KPLA 316 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120 ++DI M + + + L P+ +++ + D+ P NL +P Sbjct: 317 VMMADIQMAQHYVTGTDAEW-LVLSSQERPI-VLMSSRAEHDLSPAVAPNLNKLGVFLPY 374 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L++ + PL SAN SG+ ITN ++ + + I+D I Sbjct: 375 TPLHHLLLDLFKGPLVATSANVSGEPIITNCDELIHH-LSHVVDAIVDHNRP-------I 426 Query: 181 VNVQCEKKVRILRP 194 +N + V++++P Sbjct: 427 INGCDDSVVQVIQP 440 >gi|218659203|ref|ZP_03515133.1| Sua5/YciO/YrdC family protein [Rhizobium etli IE4771] Length = 127 Score = 87.8 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 17/141 (12%) Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194 +A PSANRSG+++ T ++ + I I++ I GLESTI+++ + LR Sbjct: 1 MAAPSANRSGKVTSTRFVEVVR-QLDGRISGIVEEDICDHGLESTILSLVGSPII--LRH 57 Query: 195 GGLEIETLKRAISVELEYCVDETSTPQ---SPGMLKSHYAPRSQVRLRAIHVNPREALIR 251 G + E L+ + +DE + PQ +PG LKSHYAP + V++ + Sbjct: 58 GSVPREALEALLG-----PIDEDTGPQKVSAPGQLKSHYAPEAAVQMNVDRPAANMVWVG 112 Query: 252 FGNVPIKNIENAIISLNLSKT 272 FG E L LS + Sbjct: 113 FGP------ECEGCQLTLSSS 127 >gi|291059589|gb|ADD72324.1| putative YrdC domain protein [Treponema pallidum subsp. pallidum str. Chicago] Length = 212 Score = 87.4 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 45/186 (24%), Positives = 69/186 (37%), Gaps = 28/186 (15%) Query: 24 PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---------AMNPLICHVSDISMVKKHA 74 +A+PT+TVYG + P A+ L +K R P I ++D V + Sbjct: 23 LVALPTDTVYGFSG--LVPHAVPDLICLKARGCTETEGNRREGYPFIALLADPQDVVVYT 80 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGH 133 L + WPGP T VL + T FR P + +I G Sbjct: 81 G-TRLPAEF-RALWPGPYTFVLRMQDGA-----------TQAFRCPADLWLRSVIRAVGG 127 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193 + SANR G+ + K + L +D G G S ++++ R+LR Sbjct: 128 AIFSTSANRHGEP-PLQDAQDIDHIFGKHLALTVDAGP-LTGSPSAVIDLT-HPVPRVLR 184 Query: 194 PGGLEI 199 G + Sbjct: 185 AGAAPL 190 >gi|114563279|ref|YP_750792.1| (NiFe) hydrogenase maturation protein HypF [Shewanella frigidimarina NCIMB 400] gi|114334572|gb|ABI71954.1| (NiFe) hydrogenase maturation protein HypF [Shewanella frigidimarina NCIMB 400] Length = 803 Score = 87.0 bits (215), Expect = 3e-15, Method: Composition-based stats. Identities = 40/180 (22%), Positives = 69/180 (38%), Gaps = 32/180 (17%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 AL +A E ++ G +AI GL D+ N A+ L + K+R A PL V+ Sbjct: 212 ALEQAVEMINRGGIVAIK-----GLGGFHLVCDATNNDAVAALRQRKQRLA-KPLAIMVT 265 Query: 66 DISMVKKHASVDPLSLHLAKLFWP-GPLTLVLDLLSTTD----------------IHPLS 108 +++ K S + P P+TL+ +++ D + PL Sbjct: 266 NLAQAKLCVSGTETEWQVLTS--PEKPITLMTKRVASVDGKDNGRDNCGNIHPIALSPLL 323 Query: 109 TANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 + +P L++ P+ SANRSG+ I N + + + I+ Sbjct: 324 APGIDRLGVFLPYTPLHHLLMQRLHKPIVATSANRSGEPIIANQAE-IEQHLSHVVDGIL 382 >gi|295400387|ref|ZP_06810366.1| SUA5/yciO/yrdC domain protein [Geobacillus thermoglucosidasius C56-YS93] gi|294977662|gb|EFG53261.1| SUA5/yciO/yrdC domain protein [Geobacillus thermoglucosidasius C56-YS93] Length = 497 Score = 86.3 bits (213), Expect = 6e-15, Method: Composition-based stats. Identities = 41/157 (26%), Positives = 67/157 (42%), Gaps = 15/157 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 D +A+ KA + L +G +AI GL D+ N A+++L K+RP PL Sbjct: 198 DGDAIDKAKQLLLSGAIVAIK-----GLGGYHLACDATNEQAVQQLRTRKQRP-TRPLAV 251 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 + +S+VK+ V+ + P +VL +T + P LKT +P Sbjct: 252 MAASLSVVKQMCEVNDEEKRVLTS--PEAPIVVLKRKTTYPLAPSLAPGLKTVGVMLPYT 309 Query: 122 GFTKKLIETYGHPL-AIPSANRSGQISITNVKHILSS 157 L++ P+ + SANRSG + + L Sbjct: 310 PLHHLLLDEEHIPVLVMTSANRSGVPILYKDEQALQD 346 >gi|148244604|ref|YP_001219298.1| hypothetical protein COSY_0455 [Candidatus Vesicomyosocius okutanii HA] gi|146326431|dbj|BAF61574.1| conserved hypothetical protein [Candidatus Vesicomyosocius okutanii HA] Length = 178 Score = 85.9 bits (212), Expect = 7e-15, Method: Composition-based stats. Identities = 39/177 (22%), Positives = 70/177 (39%), Gaps = 7/177 (3%) Query: 15 ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 A L G I+ PT+T+ GL + +++ R+ + K R + LI SD+ K + Sbjct: 8 AASCLKVGGVISNPTDTIQGLTCLPKFESSMTRILQFKHRSSTKGLILLASDVYYFKDYV 67 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133 L +++ P T +L + L T + T R+ L Sbjct: 68 KDISLLINVTINT--QPTTYLL--KANRRTSQLLTGDFDTIALRLTNNQLITNLCTATHS 123 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 L SAN + + + ++ L ++ II + S I+N+Q +K+R Sbjct: 124 ALVSSSANITSKCNARSMLD-LKLFFSDKLDFII-PPKTYNTQASKIINLQTGEKIR 178 >gi|167585583|ref|ZP_02377971.1| Sua5/YciO/YrdC/YwlC [Burkholderia ubonensis Bu] Length = 116 Score = 85.9 bits (212), Expect = 7e-15, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 44/110 (40%), Gaps = 10/110 (9%) Query: 221 QSPGMLKSHYAPRSQV----------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLS 270 ++ G LK+HYAPR+ + L A H + A ++ Sbjct: 1 RASGTLKAHYAPRTPLALLPFDQLEPLLAAAHAAGERVALVARASRAGRWAQAADVHFIA 60 Query: 271 KTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + A L+ ++ D + + I +P+ IA+N+RL RAAA Sbjct: 61 APEDPQAYAHALYGMLRALDRADVARILVEKLPDTVEWIAVNDRLGRAAA 110 >gi|301167968|emb|CBW27554.1| conserved hypothetical protein [Bacteriovorax marinus SJ] Length = 199 Score = 85.9 bits (212), Expect = 8e-15, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 64/179 (35%), Gaps = 8/179 (4%) Query: 23 LPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD-PLSL 81 PT+TV+G+ + + ++ +IK PL + M++ + ++ Sbjct: 8 KLFVYPTDTVWGIGGNIFSNECYEKISKIKGHALKKPLSIVFKNYEMIEDLIDLPKNITK 67 Query: 82 HLAKLFWPGPLTLVLDLL-STTDIHPLSTANLKTACFR-VPCGFTKKLIETYGHPLAIPS 139 + ++ T+ L + + D+ + R + + E P+ S Sbjct: 68 QWLEKYFTLESTIGLPKVWAKRDLPKWICQESEYISIRCMDTPELAAIFEKVKGPVTSTS 127 Query: 140 ANRSGQISITNVKHILSSSICKEIP---LIIDGGISKIGLESTIVNVQCEKKVRILRPG 195 N +G+ + + K +P + + G STIV + K + +R G Sbjct: 128 LNLTGEE-PITEQEMAKEFFRKNLPGEEFVERISTNCSGRSSTIV-LFDGKNCQFVREG 184 >gi|124027632|ref|YP_001012952.1| hydrogenase maturation protein [Hyperthermus butylicus DSM 5456] gi|123978326|gb|ABM80607.1| hydrogenase maturation protein [Hyperthermus butylicus DSM 5456] Length = 771 Score = 85.9 bits (212), Expect = 8e-15, Method: Composition-based stats. Identities = 45/217 (20%), Positives = 79/217 (36%), Gaps = 19/217 (8%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICH 63 + + +A +D G +A V G+ + + + R+ IK RP PL Sbjct: 204 EDPVAEAARLIDEGHIVA-----VKGVGGFHIASLATDDEVVARVRRIKSRP-TQPLALM 257 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 D S+ ++D + L + P L+L + PL L T +P Sbjct: 258 ARDCSVAAGLVALDAHACQLLRS--PRRPILLLPKRDDAPVSPLVAPGLDTLGIMLPYTG 315 Query: 124 TKKLIETY--GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTI 180 L+ L + S NR G V+ IL + EI I+ + ++ ++ Sbjct: 316 LHLLLLHMVRDGFLVMTSGNRHGMPMCRTVECIL-DQLGGEIDYILTHNREIVHRVDDSV 374 Query: 181 VNVQCEKKVRILRPGGLEIETLK--RAISVELEYCVD 215 V K V + R G E ++ R++ + D Sbjct: 375 VRFTAGKPVLLRRARGYAPEWIRISRSVGEHVAVGAD 411 >gi|312111086|ref|YP_003989402.1| (NiFe) hydrogenase maturation protein HypF [Geobacillus sp. Y4.1MC1] gi|311216187|gb|ADP74791.1| (NiFe) hydrogenase maturation protein HypF [Geobacillus sp. Y4.1MC1] Length = 758 Score = 85.9 bits (212), Expect = 8e-15, Method: Composition-based stats. Identities = 41/157 (26%), Positives = 67/157 (42%), Gaps = 15/157 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 D +A+ KA + L +G +AI GL D+ N A+++L K+RP PL Sbjct: 198 DGDAIDKAKQLLLSGAIVAIK-----GLGGYHLACDATNEQAVQQLRTRKQRP-TRPLAV 251 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 + +S+VK+ V+ + P +VL +T + P LKT +P Sbjct: 252 MAASLSVVKQMCEVNDEEKRVLTS--PEAPIVVLKRKTTYPLAPSLAPGLKTVGVMLPYT 309 Query: 122 GFTKKLIETYGHPL-AIPSANRSGQISITNVKHILSS 157 L++ P+ + SANRSG + + L Sbjct: 310 PLHHLLLDEEHIPVLVMTSANRSGVPILYKDEQALQD 346 >gi|225025257|ref|ZP_03714449.1| hypothetical protein EIKCOROL_02154 [Eikenella corrodens ATCC 23834] gi|224942015|gb|EEG23224.1| hypothetical protein EIKCOROL_02154 [Eikenella corrodens ATCC 23834] Length = 141 Score = 85.9 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 31/143 (21%), Positives = 56/143 (39%), Gaps = 5/143 (3%) Query: 50 EIKKRPAMNPLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS 108 ++KKRP LI +D+ ++ + LA+ WP +T + + L Sbjct: 2 QLKKRPQHKGLIVIGNDLKQLEPLLQRLPENQRRLAQSTWPAAVTFLFAAADSVP-ALLR 60 Query: 109 TANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 + RVP ++L G PL S NRSG+ ++ + + + ++ Sbjct: 61 GRGREKLAVRVPAHDGARRLCALLGTPLVSTSCNRSGRRALRHQREV--RRCFGRDVYVV 118 Query: 168 DGGISKIGLESTIVNVQCEKKVR 190 +G S IV+ Q +R Sbjct: 119 NGRCGGSKRPSRIVDAQSGVYLR 141 >gi|251789042|ref|YP_003003763.1| (NiFe) hydrogenase maturation protein HypF [Dickeya zeae Ech1591] gi|247537663|gb|ACT06284.1| (NiFe) hydrogenase maturation protein HypF [Dickeya zeae Ech1591] Length = 766 Score = 85.5 bits (211), Expect = 9e-15, Method: Composition-based stats. Identities = 46/205 (22%), Positives = 81/205 (39%), Gaps = 13/205 (6%) Query: 5 SITD-SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMN 58 +ITD +A+ +A L AG +A V GL D+ + A+ RL E K RPA Sbjct: 201 AITDGDDAVTQAAAALCAGRIVA-----VKGLGGFHLACDATDAQAVARLRERKHRPA-K 254 Query: 59 PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 PL + D + + + +SV + L + P ++L L ++ L Sbjct: 255 PLAVMLPDANWLARCSSVAEPASALRLMQSPAAPIVLLPLRHDGELAAGVAPGLDEVGLM 314 Query: 119 VPCGFTKKLIETY-GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 +P + L+ G PL + S N G+ + + L ++ + Sbjct: 315 LPANPLQHLLLAAVGRPLVMTSGNAGGKPPVLDNTQALDELATTADLWLLHDRDIVQRAD 374 Query: 178 STIVNVQCEKKVRILRPGGLEIETL 202 ++V +Q E+ + R G + L Sbjct: 375 DSVVRMQDERAEMLRRARGYVPDAL 399 >gi|238788874|ref|ZP_04632664.1| Ribosomal modification protein RimN [Yersinia frederiksenii ATCC 33641] gi|238722901|gb|EEQ14551.1| Ribosomal modification protein RimN [Yersinia frederiksenii ATCC 33641] Length = 92 Score = 85.5 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 31/72 (43%) Query: 18 FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77 L IA PTE V+GL D + A+ L +K+RP LI ++ +K + Sbjct: 16 ALQQEAVIAYPTEAVFGLGCDPDSEKAVNALLVLKQRPWQKGLILIAANYEQLKPYVDDA 75 Query: 78 PLSLHLAKLFWP 89 LS +P Sbjct: 76 MLSDEQRATIFP 87 >gi|218654186|emb|CAN86632.2| C. elegans protein Y48C3A.18b, confirmed by transcript evidence [Caenorhabditis elegans] Length = 143 Score = 85.1 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 45/137 (32%), Positives = 65/137 (47%), Gaps = 7/137 (5%) Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130 K S +S LA PGP+TL+ + L + + RVP C + + Sbjct: 2 KLVSRQTISDELANCLLPGPVTLMFERLPC--LPAEFNPGVVNVACRVPDCPIVSTICKK 59 Query: 131 YGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGG-ISKIGLESTIVNVQCEKK 188 G PLA SAN SG ++ T++ H + I LI+D G I G STIV++ E Sbjct: 60 LGQPLAQTSANVSGSSLNPTSIDH--FRDLHPNIDLILDAGSIISSGEGSTIVDLTVESG 117 Query: 189 VRILRPGGLEIETLKRA 205 RI+R G E ET+++ Sbjct: 118 FRIVRSGCAEKETMQKL 134 >gi|193205175|ref|NP_001122661.1| hypothetical protein Y48C3A.18 [Caenorhabditis elegans] Length = 171 Score = 85.1 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 45/137 (32%), Positives = 65/137 (47%), Gaps = 7/137 (5%) Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130 K S +S LA PGP+TL+ + L + + RVP C + + Sbjct: 2 KLVSRQTISDELANCLLPGPVTLMFERLPC--LPAEFNPGVVNVACRVPDCPIVSTICKK 59 Query: 131 YGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGG-ISKIGLESTIVNVQCEKK 188 G PLA SAN SG ++ T++ H + I LI+D G I G STIV++ E Sbjct: 60 LGQPLAQTSANVSGSSLNPTSIDH--FRDLHPNIDLILDAGSIISSGEGSTIVDLTVESG 117 Query: 189 VRILRPGGLEIETLKRA 205 RI+R G E ET+++ Sbjct: 118 FRIVRSGCAEKETMQKL 134 >gi|317051475|ref|YP_004112591.1| (NiFe) hydrogenase maturation protein HypF [Desulfurispirillum indicum S5] gi|316946559|gb|ADU66035.1| (NiFe) hydrogenase maturation protein HypF [Desulfurispirillum indicum S5] Length = 756 Score = 85.1 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 41/171 (23%), Positives = 64/171 (37%), Gaps = 16/171 (9%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPL 60 T ++A+R A + G IA V GL D+ N A+ L E K R PL Sbjct: 203 ATQTDAVRLAAREILQGNVIA-----VKGLGGFHLLCDATNHRAVESLRERKHR-YGKPL 256 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLV--LDLLSTTDIHPLSTANLKTACFR 118 D + ++ D +L L + P+ L+ L + L + T Sbjct: 257 AVMFRDREHLLSYSPCDETALQLLESHR-APIVLLERLPHSRHRPLSELVAPGVPTLGVF 315 Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 + + L+ P+ SAN S + ITNV H L + + +D Sbjct: 316 LAYTPLHRLLLHLVNRPVVATSANISDEPIITNV-HDLYARLSGGFAFALD 365 >gi|303241784|ref|ZP_07328280.1| (NiFe) hydrogenase maturation protein HypF [Acetivibrio cellulolyticus CD2] gi|302590665|gb|EFL60417.1| (NiFe) hydrogenase maturation protein HypF [Acetivibrio cellulolyticus CD2] Length = 794 Score = 84.7 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 42/197 (21%), Positives = 74/197 (37%), Gaps = 16/197 (8%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59 IT A R A L G +A V G+ + ++ L E+K R P Sbjct: 223 DITGPEAFRSALGILRQGGVLA-----VKGIGGFHLCCSPFDTDSVEMLRELKGR-EEKP 276 Query: 60 LICHVSDISMVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 D+ V+K+ V D L P +VL +DI + + Sbjct: 277 FAVMFDDVEQVEKYCIVTDEEKKQLLSRERP----IVLLRRRESDISKAVFKSSRFLGCF 332 Query: 119 VPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 +P K+I PL + SAN SG+ IT+ ++S + ++ + G++ Sbjct: 333 LPYTPLHKMIINSLGPLVMTSANLSGEPIITDNDRMMSLDSERLSGVLYNERRILTGIDD 392 Query: 179 TIVNVQCEKKVRILRPG 195 +++ V ++ +R Sbjct: 393 SVLKVSPGNGIQFIRRA 409 >gi|113474623|ref|YP_720684.1| (NiFe) hydrogenase maturation protein HypF [Trichodesmium erythraeum IMS101] gi|110165671|gb|ABG50211.1| (NiFe) hydrogenase maturation protein HypF [Trichodesmium erythraeum IMS101] Length = 785 Score = 84.7 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 70/201 (34%), Gaps = 16/201 (7%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 + + C + G+ +A V GL D+ N A+++L K+RP PL Sbjct: 206 DDVDALCTLIQRGMIVA-----VKGLGGFHLACDATNEEAVQKLRYRKRRP-DKPLALMA 259 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123 DI ++ ++ S+ + L P+ ++L + + P T F +P Sbjct: 260 RDIEVISEYCSISEMEHKLLSSVA-API-VLLSANGSKQVAPSVAPGQNTLGFMLPYTPL 317 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIVN 182 + P+ + S N S + + + + + ++ ++V Sbjct: 318 HHLALRRLNVPMVLTSGNFSDEPQCIDNEE-TREKLSGIADYFLIHNRPIFNRVDDSVVR 376 Query: 183 VQCEKKVRILRPGGLEIETLK 203 V E + R G + Sbjct: 377 VIKEVPQVLRRARGYAPAPIN 397 >gi|255021693|ref|ZP_05293733.1| [NiFe] hydrogenase metallocenter assembly protein HypF [Acidithiobacillus caldus ATCC 51756] gi|254968833|gb|EET26355.1| [NiFe] hydrogenase metallocenter assembly protein HypF [Acidithiobacillus caldus ATCC 51756] Length = 803 Score = 84.7 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 40/200 (20%), Positives = 72/200 (36%), Gaps = 21/200 (10%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59 T + + A L G + I G+ D+ N +A+ RL E K RP P Sbjct: 208 RFTSLDDIDAAANLLRTGEIVLIK-----GIGGFHLACDAANASAVNRLRERKGRP-HKP 261 Query: 60 LICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 L DI ++ ++A V L L P ++L + + F Sbjct: 262 LALMARDIEVIARYAEVGELDRRALLSKEAP---IVLLKRREPLSLPDSVAPGMCRLGFM 318 Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL- 176 +P L+ + P+ + S N + IT+ + ++ I+ + + Sbjct: 319 LPYTPLHHLLLRRWERPIVLTSGNLTDAPQITDEVEAI-EALDGIADWILSHDRTIVNRV 377 Query: 177 -ESTIVNVQCEKKVRILRPG 195 +S V V ++R+LR Sbjct: 378 DDS--VAVVAAGELRLLRRA 395 >gi|260789488|ref|XP_002589778.1| hypothetical protein BRAFLDRAFT_90451 [Branchiostoma floridae] gi|229274961|gb|EEN45789.1| hypothetical protein BRAFLDRAFT_90451 [Branchiostoma floridae] Length = 160 Score = 84.3 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 44/74 (59%), Gaps = 3/74 (4%) Query: 2 QIMSITD---SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58 +I+ + D L A + L AG IA+PT+T+YGLA +++ A+ ++Y IK R + Sbjct: 87 KIIKLDDDMLEKQLSMAAKSLQAGNIIAVPTDTIYGLAGLAQSTEAVEQIYAIKGRNSSK 146 Query: 59 PLICHVSDISMVKK 72 P+ V+++S + + Sbjct: 147 PVAISVAEVSDIPR 160 >gi|158431283|pdb|2YV4|A Chain A, Crystal Structure Of C-Terminal Sua5 Domain From Pyrococcus Horikoshii Hypothetical Sua5 Protein Ph0435 Length = 105 Score = 84.3 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 5/93 (5%) Query: 232 PRSQVR--LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIA 289 PR +V+ + + +E + G + ++ NA L ++E A NLF ++ Sbjct: 12 PREKVKGKITELVKELKERGKKVGVIGSESY-NADEFFFLGS--SVEEVAKNLFKALRYX 68 Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322 D +G + + GLG+A+ NRL +A+ + Sbjct: 69 DKAGVDVVIAEGVEERGLGLAVXNRLRKASGYK 101 >gi|224082001|ref|XP_002195111.1| PREDICTED: yrdC domain containing (E. coli) [Taeniopygia guttata] Length = 162 Score = 84.3 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 15/151 (9%) Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129 +++ V+ + L + PGP+TLVL+ + +++ R+P F + L Sbjct: 15 RRYCHVN-VPDQLLRDLLPGPVTLVLER--SEELNKDLNPFTSLVGVRIPDHPFMRDLAR 71 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI------SKIGLESTIVNV 183 PLA+ SAN S Q S V + ++ L++DGG + L ST+V++ Sbjct: 72 ACSGPLALTSANISSQGSTLTVLE--FQDLWPQLSLVVDGGPIGDIQSPECRLGSTVVDL 129 Query: 184 QCEKKVRILRPGGL---EIETLKRAISVELE 211 K I+RPG +E LK+ + E Sbjct: 130 SVSGKFSIIRPGCALTPTVEILKKKYGLVPE 160 >gi|313683170|ref|YP_004060908.1| (nife) hydrogenase maturation protein hypf [Sulfuricurvum kujiense DSM 16994] gi|313156030|gb|ADR34708.1| (NiFe) hydrogenase maturation protein HypF [Sulfuricurvum kujiense DSM 16994] Length = 758 Score = 84.3 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 38/188 (20%), Positives = 70/188 (37%), Gaps = 22/188 (11%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 + + A E L +G IA+ GL D+ + A+ L K R A PL Sbjct: 203 DPIDLAVEMLRSGKIIALK-----GLGGFHLMCDATSDAAVSELRLRKHRKA-KPLAVMF 256 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123 + +++ ++ + P+ +++D L TD+ ++ +P Sbjct: 257 RSLEQCERYTRINQSEREMIGGAI-KPI-VIVDALQGTDLSKYIAPGIERLGVFIPYTPL 314 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + + E PL SAN S + I I++ + + I+D TIVN Sbjct: 315 HRLVFEKIDFPLVATSANISDEPIIVRSSEIIN-RLGNVVDGILDHDR-------TIVNA 366 Query: 184 QCEKKVRI 191 + V+ Sbjct: 367 LDDAVVQF 374 >gi|145637788|ref|ZP_01793438.1| hypothetical protein CGSHiHH_02760 [Haemophilus influenzae PittHH] gi|145269033|gb|EDK08986.1| hypothetical protein CGSHiHH_02760 [Haemophilus influenzae PittHH] Length = 67 Score = 84.3 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 30/55 (54%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 + + L +A PTE V+GL + ++ +A+++L ++K+RP LI + Sbjct: 4 EQIADALRQNQVVAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSL 58 >gi|325525441|gb|EGD03262.1| putative translation factor [Burkholderia sp. TJI49] Length = 116 Score = 84.3 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 43/110 (39%), Gaps = 10/110 (9%) Query: 221 QSPGMLKSHYAPRSQV----------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLS 270 ++ G LK+HYAPR+ + L + + A ++ Sbjct: 1 RASGTLKAHYAPRTPLALLPFDALESLLAVAQADGERVALVARASRAGRWAQADGVHFVA 60 Query: 271 KTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + A +L+ ++ D + + I +P IA+N+RL RAAA Sbjct: 61 APEDPQAYARDLYGILRTLDRAQVARILVEKLPETVEWIAVNDRLGRAAA 110 >gi|212635441|ref|YP_002311966.1| hydrogenase maturation protein HypF [Shewanella piezotolerans WP3] gi|212556925|gb|ACJ29379.1| Hydrogenase maturation protein HypF [Shewanella piezotolerans WP3] Length = 798 Score = 84.0 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 73/172 (42%), Gaps = 15/172 (8%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMN 58 ++ ++S+ L +A E + +G +AI GL D+ N +++ L + K RPA Sbjct: 199 ITSSESDPLVQAIEAIKSGKILAIK-----GLGGFHLVCDATNHDSVKALRQRKNRPA-K 252 Query: 59 PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDL-LSTTDIHPLSTANLKTACF 117 PL V + + KK + + P+T++ +I + ++ Sbjct: 253 PLAIMVENSQVAKKLVTGNDTEWQTLNSN-ERPITVMQKRQKPELEISSIIAPDIDRLGV 311 Query: 118 RVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 +P + L+E PL + SAN SG+ IT + S + + I+D Sbjct: 312 FLPYTPLHQMLMERVARPLVMTSANLSGEPIIT-ASEDIVSKLGHIVDHILD 362 >gi|302850327|ref|XP_002956691.1| hypothetical protein VOLCADRAFT_107339 [Volvox carteri f. nagariensis] gi|300258052|gb|EFJ42293.1| hypothetical protein VOLCADRAFT_107339 [Volvox carteri f. nagariensis] Length = 233 Score = 84.0 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 8/96 (8%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 +D+ L + + L G IPT+T+ + D N A++RLY +K+ A PL C V + Sbjct: 61 SDAWRLEQIVDLLKNGAVGVIPTDTLPAIVCDLHNKDAVQRLYTVKEMDAKKPLSCLVPN 120 Query: 67 ISMVKKHASVDPLS--------LHLAKLFWPGPLTL 94 +S V ++ + P S ++ + PGP L Sbjct: 121 LSAVTQYTTGFPASNTPGSPNWFNVVRRLVPGPTIL 156 >gi|319426299|gb|ADV54373.1| (NiFe) hydrogenase maturation protein HypF [Shewanella putrefaciens 200] Length = 801 Score = 84.0 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 43/197 (21%), Positives = 84/197 (42%), Gaps = 22/197 (11%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMN 58 +++T L+ A L G +AI GL D+R+ A+ L + K+R A Sbjct: 214 VNVTQQTVLQLAANRLAQGQILAIK-----GLGGFHLVCDARHTGAVTALRQRKQRQA-K 267 Query: 59 PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 PL V++I+M +++ + + P+ ++++ + D+ NL Sbjct: 268 PLAVMVANIAMAQRYVTGTDAEWQVL-SSQERPI-VLMNSVPANDLSIEVAPNLDKLGVF 325 Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 +P L+ + PL SAN SG+ IT+ ++S + + I+D Sbjct: 326 LPYTPLHHLLLALFNGPLVATSANVSGEPIITHCDELVSH-LSHVVDAIVDHNRP----- 379 Query: 178 STIVNVQCEKKVRILRP 194 I+N + V++++P Sbjct: 380 --IINGCDDSVVQVIQP 394 >gi|117920320|ref|YP_869512.1| (NiFe) hydrogenase maturation protein HypF [Shewanella sp. ANA-3] gi|117612652|gb|ABK48106.1| (NiFe) hydrogenase maturation protein HypF [Shewanella sp. ANA-3] Length = 835 Score = 84.0 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 67/165 (40%), Gaps = 17/165 (10%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 L A E L G +AI GL D+ N A+ +L + K+R A PL + Sbjct: 245 VLSAAAEKLAQGQILAIK-----GLGGFHLMCDATNTLAVNQLRQRKQRKA-KPLAVMMP 298 Query: 66 DISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123 I + K++ + + L+ P +++ ++ P N+ +P Sbjct: 299 SIEVAKRYVTGTQVEWQTLSAQERP---IVLMQAQDKHNLSPEIAPNIPKLGIFLPYTPL 355 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 L+ + PL SAN SG+ IT+ ++S + + I+D Sbjct: 356 HHLLLGQFNGPLVATSANVSGEPIITDCDELIS-QLGHVVDAIVD 399 >gi|288818319|ref|YP_003432667.1| hydrogenase maturation protein [Hydrogenobacter thermophilus TK-6] gi|152061261|dbj|BAF73680.1| hydrogenase maturation protein [Hydrogenobacter thermophilus] gi|288787719|dbj|BAI69466.1| hydrogenase maturation protein [Hydrogenobacter thermophilus TK-6] gi|308751916|gb|ADO45399.1| (NiFe) hydrogenase maturation protein HypF [Hydrogenobacter thermophilus TK-6] Length = 742 Score = 84.0 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 44/202 (21%), Positives = 71/202 (35%), Gaps = 20/202 (9%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAM 57 I+ AL+ + L GL +A V G+ D+ N A+R L E K+R + Sbjct: 193 ILKADRDKALKLVAKALKDGLIVA-----VKGIGGFHLMCDATNEEAVRLLRERKRR-SE 246 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 P D+ V +A L L P ++ + D+ LK Sbjct: 247 KPFAVMFRDLEQVSVYAEPTELERALLLS----PERPIVLVRKRRDLASSVAPGLKRIGA 302 Query: 118 RVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILS--SSICKEIPLIIDGGISKI 174 +P ++ + P+ S N S + + + + SS I L I + Sbjct: 303 FLPYSPLHHIILRSVDFPVVATSGNLSDEPIVKDNAEAIQKLSSFAHMILLHNRD-IKRR 361 Query: 175 GLESTIVNVQCEKKVRILRPGG 196 +S +V V V I R G Sbjct: 362 CDDS-VVKVIGGVPVPIRRSRG 382 >gi|73749117|ref|YP_308356.1| [NiFe] hydrogenase maturation protein HypF [Dehalococcoides sp. CBDB1] gi|289433093|ref|YP_003462966.1| (NiFe) hydrogenase maturation protein HypF [Dehalococcoides sp. GT] gi|73660833|emb|CAI83440.1| [NiFe] hydrogenase maturation protein HypF [Dehalococcoides sp. CBDB1] gi|288946813|gb|ADC74510.1| (NiFe) hydrogenase maturation protein HypF [Dehalococcoides sp. GT] Length = 763 Score = 84.0 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 30/169 (17%), Positives = 63/169 (37%), Gaps = 15/169 (8%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59 +++++ + +A + L G +A V GL D+ NP A+ L K+RP+ P Sbjct: 201 ELSNTDTIAEAAKLLQDGQILA-----VRGLGGFLLAADATNPQAVATLRNRKRRPS-KP 254 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 ++++ +K+ S+ HL P ++ + + P + + Sbjct: 255 FAVMLANLEEARKYCSISKEEEHLL--VSPAAPIVLCRWNKESPVCPETAPGQNYLGIML 312 Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 L++ PL + S N S + + L +C + Sbjct: 313 SYTPLHHLLLKEINKPLVMTSGNLSEEPIAKDNDEALK-RLCNIADYFL 360 >gi|120598734|ref|YP_963308.1| (NiFe) hydrogenase maturation protein HypF [Shewanella sp. W3-18-1] gi|120558827|gb|ABM24754.1| (NiFe) hydrogenase maturation protein HypF [Shewanella sp. W3-18-1] Length = 801 Score = 84.0 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 43/197 (21%), Positives = 84/197 (42%), Gaps = 22/197 (11%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMN 58 +++T L+ A L G +AI GL D+R+ A+ L + K+R A Sbjct: 214 VNVTQQTVLQLAANRLAQGQILAIK-----GLGGFHLVCDARHTGAVTALRQRKQRQA-K 267 Query: 59 PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 PL V++I+M +++ + + P+ ++++ + D+ NL Sbjct: 268 PLAVMVANIAMAQRYVTGTDAEWQVL-SSQERPI-VLMNSIPANDLSIEVAPNLDKLGVF 325 Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 +P L+ + PL SAN SG+ IT+ ++S + + I+D Sbjct: 326 LPYTPLHHLLLALFNGPLVATSANVSGEPIITHCDELVSH-LSHVVDAIVDHNRP----- 379 Query: 178 STIVNVQCEKKVRILRP 194 I+N + V++++P Sbjct: 380 --IINGCDDSVVQVIQP 394 >gi|146293189|ref|YP_001183613.1| (NiFe) hydrogenase maturation protein HypF [Shewanella putrefaciens CN-32] gi|145564879|gb|ABP75814.1| (NiFe) hydrogenase maturation protein HypF [Shewanella putrefaciens CN-32] Length = 801 Score = 83.6 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 43/197 (21%), Positives = 84/197 (42%), Gaps = 22/197 (11%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMN 58 +++T L+ A L G +AI GL D+R+ A+ L + K+R A Sbjct: 214 VNVTQQTVLQLAANRLAQGQILAIK-----GLGGFHLVCDARHTGAVTALRQRKQRQA-K 267 Query: 59 PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 PL V++I+M +++ + + P+ ++++ + D+ NL Sbjct: 268 PLAVMVANIAMAQRYVTGTEAEWQVL-SSQERPI-VLMNSIPANDLSIEVAPNLDKLGVF 325 Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 +P L+ + PL SAN SG+ IT+ ++S + + I+D Sbjct: 326 LPYTPLHHLLLALFNGPLVATSANVSGEPIITHCDELVSH-LSHVVDAIVDHNRP----- 379 Query: 178 STIVNVQCEKKVRILRP 194 I+N + V++++P Sbjct: 380 --IINGCDDSVVQVIQP 394 >gi|225850258|ref|YP_002730492.1| (NiFe) hydrogenase maturation protein HypF [Persephonella marina EX-H1] gi|225646099|gb|ACO04285.1| (NiFe) hydrogenase maturation protein HypF [Persephonella marina EX-H1] Length = 747 Score = 83.6 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 55/154 (35%), Gaps = 14/154 (9%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 AL+ A E L G +A V G+ D+ + AI L E K+R P Sbjct: 201 EEALKIAVELLGKGKILA-----VKGIGGFHLVCDATDDKAIDLLRERKRRGE-KPFAVM 254 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CG 122 DI +K +A + P + P +++ T + L +P Sbjct: 255 FRDIDQIKDYAEITPFEEAVI--LSPERPIVIVRSKKETGLSKGVAPYLDRIGVFLPYSP 312 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILS 156 L+ YG PL + SAN S + + + Sbjct: 313 LHHLLLNDYGKPLVMTSANLSDEPIVKDNDEAFE 346 >gi|242239941|ref|YP_002988122.1| (NiFe) hydrogenase maturation protein HypF [Dickeya dadantii Ech703] gi|242131998|gb|ACS86300.1| (NiFe) hydrogenase maturation protein HypF [Dickeya dadantii Ech703] Length = 769 Score = 83.6 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 39/193 (20%), Positives = 71/193 (36%), Gaps = 12/193 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 A+ +A + L AG +A V GL D+ A+ RL K RPA PL Sbjct: 205 DEAIAQAAQTLLAGGIVA-----VKGLGGFHLACDAICDDAVARLRARKHRPA-KPLAVM 258 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 + D + +++ ++ L P ++L L + + L +P Sbjct: 259 LPDDGWLAACSTLSDVNAARRLLRSPAAPIVLLPLRTDGALSAGIAPGLDEVGLMLPGNP 318 Query: 124 TKKLIETY-GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 + L+ G PL + S N SG+ + L+ ++ + ++V Sbjct: 319 LQHLLLAAVGRPLVMTSGNASGRPPALDNAQALTDLAGIADVWLLHDRDIVQRADDSVVR 378 Query: 183 VQCEKKVRILRPG 195 +Q + +LR Sbjct: 379 MQSAGQAELLRRA 391 >gi|217973576|ref|YP_002358327.1| (NiFe) hydrogenase maturation protein HypF [Shewanella baltica OS223] gi|217498711|gb|ACK46904.1| (NiFe) hydrogenase maturation protein HypF [Shewanella baltica OS223] Length = 840 Score = 83.6 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 43/194 (22%), Positives = 76/194 (39%), Gaps = 22/194 (11%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLI 61 TD L+ A L G +AI GL D+RN A+ L K+R A PL Sbjct: 265 TDLAVLKAAANRLHQGQILAIK-----GLGGFHLICDARNDKAVNTLRLRKQRQA-KPLA 318 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120 ++DI M + + + + P+ +++ ++ NL +P Sbjct: 319 VMMADIQMAQHYVTGTDAEWQVL-SSQERPI-VLMSSRPEHELSLAVAPNLNKLGVFLPY 376 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L+ + PL SAN SG+ IT+ ++ + + I+D I Sbjct: 377 TPLHHLLLGLFKGPLVATSANVSGEPIITDCDELIHH-LSHVVDAIVDHNRP-------I 428 Query: 181 VNVQCEKKVRILRP 194 +N + V++++P Sbjct: 429 INGCDDSVVQVIQP 442 >gi|24373654|ref|NP_717697.1| hydrogenase maturation protein HypF [Shewanella oneidensis MR-1] gi|24347998|gb|AAN55141.1|AE015650_11 hydrogenase maturation protein HypF [Shewanella oneidensis MR-1] Length = 808 Score = 83.2 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 40/164 (24%), Positives = 66/164 (40%), Gaps = 15/164 (9%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 L A L G +AI GL D+RN A+ +L + K+R A PL + Sbjct: 221 VLSAAANMLAQGHILAIK-----GLGGFHLMCDARNSHAVSQLRQRKQRKA-KPLAVMMP 274 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFT 124 I M K++ + P +++ L D++P N+ +P Sbjct: 275 SIEMAKQYVTGTEAEWQTLSS--PERPIVLMQALDEHDLNPEIAPNIPKLGVFLPYTPLH 332 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 L+ + PL SAN SG+ IT+ ++S + + I+D Sbjct: 333 HLLLSQFNGPLVATSANVSGEPIITDCDALIS-QLGHVVDAIVD 375 >gi|119627723|gb|EAX07318.1| yrdC domain containing (E. coli), isoform CRA_b [Homo sapiens] Length = 239 Score = 83.2 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 11/125 (8%) Query: 79 LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAI 137 + L K PGP+TLV++ + +++ R+P F + L + + PLA+ Sbjct: 96 VPEGLLKDLLPGPVTLVMER--SEELNKDLNPFTPLVGIRIPDHAFMQDLAQMFEGPLAL 153 Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE------STIVNVQCEKKVRI 191 SAN S Q S NV+ + ++ L+IDGG G ST+V++ K I Sbjct: 154 TSANLSSQASSLNVEE--FQDLWPQLSLVIDGGQIGDGQSPECRLGSTVVDLSVPGKFGI 211 Query: 192 LRPGG 196 +RPG Sbjct: 212 IRPGC 216 >gi|149608588|ref|XP_001515227.1| PREDICTED: similar to YRDC protein, partial [Ornithorhynchus anatinus] Length = 65 Score = 83.2 bits (205), Expect = 6e-14, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 34/62 (54%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 AL A L AG IA+PT+T+YGLA + + A+R +Y IK R PL + ++ Sbjct: 4 EALGLAVSALRAGGVIAVPTDTLYGLACSALSSAALRDVYRIKGRSGDKPLALCLGSVAD 63 Query: 70 VK 71 V Sbjct: 64 VY 65 >gi|147669879|ref|YP_001214697.1| (NiFe) hydrogenase maturation protein HypF [Dehalococcoides sp. BAV1] gi|146270827|gb|ABQ17819.1| (NiFe) hydrogenase maturation protein HypF [Dehalococcoides sp. BAV1] Length = 763 Score = 82.8 bits (204), Expect = 7e-14, Method: Composition-based stats. Identities = 29/169 (17%), Positives = 62/169 (36%), Gaps = 15/169 (8%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59 +++++ + +A + L G +AI GL D+ NP A+ L K RP+ P Sbjct: 201 ELSNTDTIAEAAKLLQDGQILAIR-----GLGGFLLAADATNPQAVAALRNRKHRPS-KP 254 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 ++++ +K+ S+ +L P ++ + + P + + Sbjct: 255 FAVMLANLEEARKYCSISKEEENLL--VSPAAPIVLCRWNKESPVCPETAPGQNYLGIML 312 Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 L++ PL + S N S + + L +C + Sbjct: 313 SYTPLHHLLLKEINKPLVMTSGNLSEEPIAKDNDEALK-RLCNIADYFL 360 >gi|294634811|ref|ZP_06713335.1| [NiFe] hydrogenase maturation protein HypF [Edwardsiella tarda ATCC 23685] gi|291091779|gb|EFE24340.1| [NiFe] hydrogenase maturation protein HypF [Edwardsiella tarda ATCC 23685] Length = 774 Score = 82.8 bits (204), Expect = 7e-14, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 62/156 (39%), Gaps = 16/156 (10%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 A + C+ L++G +AI GL D+ + AI RL K+RPA PL Sbjct: 200 EEAWQAVCQVLESGGIVAIK-----GLGGFHLACDASDAAAIARLRTRKQRPA-KPLALM 253 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWP-GPLTLVLDLLSTTDIHPLSTANLKTACFRVPC- 121 + I + ++ P + +A L P P+ L+ ++ + L +P Sbjct: 254 LPGIDWLARYCRTTPEAGLVALLNSPAAPIVLI---PASDAVPTGVAPGLDEVGVMLPST 310 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSS 157 L+ G PL + S N SGQ + LS Sbjct: 311 PLHHLLLARLGRPLVMTSGNASGQPPALSNDQALSD 346 >gi|227355800|ref|ZP_03840193.1| hydrogenase maturation protein [Proteus mirabilis ATCC 29906] gi|227164119|gb|EEI49016.1| hydrogenase maturation protein [Proteus mirabilis ATCC 29906] Length = 766 Score = 82.4 bits (203), Expect = 8e-14, Method: Composition-based stats. Identities = 41/203 (20%), Positives = 76/203 (37%), Gaps = 14/203 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 AL +AC+ L AG +A V G+ D+RN ++ RL K RPA PL Sbjct: 200 ERALTQACQALLAGKIVA-----VKGIGGFHLVCDARNSESVARLRARKHRPA-KPLAVM 253 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWP--GPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 ++ I ++K + + P+ L+ ++ + L L +P Sbjct: 254 LTGIEQLQKPDDNAEFYSKVIETLTSTAAPIVLIPKEIAPISLSELIAPGLTEVGVMLPA 313 Query: 122 GFTKKLIETYGH-PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 + L+ PL + S N +G + L+ +I + ++ Sbjct: 314 NPLQHLLAHETQIPLVMTSGNATGHTPALTNEEALNQLGDIAELFLIHNREIIQRADDSL 373 Query: 181 VNVQCEKKVRILRPGGLEIETLK 203 V ++ ++ V I R G + + Sbjct: 374 VRIEDDQCVMIRRSRGYVPDAIA 396 >gi|90410745|ref|ZP_01218760.1| hydrogenase maturation protein HypF [Photobacterium profundum 3TCK] gi|90328376|gb|EAS44674.1| hydrogenase maturation protein HypF [Photobacterium profundum 3TCK] Length = 745 Score = 82.4 bits (203), Expect = 8e-14, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 59/165 (35%), Gaps = 15/165 (9%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 A+ K + L G +AI GL ++ N A+ RL +IK+R P V+ Sbjct: 173 AIDKTAKTLQRGGIVAIK-----GLGGFHLACNASNSDAVTRLRQIKRRQR-KPFAIMVA 226 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLL-STTDIHPLSTANLKTACFRVP-CGF 123 D + K+ + + P P+ L+ + + ++ +P Sbjct: 227 DGNAAKQLVWGEAKEWDML-HSQPSPIVLMKKKAVPQSYLAANVAPSVPYLGVILPYTPL 285 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 L+E + + SAN SG T + I ++D Sbjct: 286 HVLLLEHLDQAIVLTSANGSGMPIATEYDEVY-DQFDGLIDGVLD 329 >gi|308189829|ref|YP_003922760.1| translation factor [Mycoplasma fermentans JER] gi|319777044|ref|YP_004136695.1| translation factor sua5 protein [Mycoplasma fermentans M64] gi|307624571|gb|ADN68876.1| translation factor [Mycoplasma fermentans JER] gi|318038119|gb|ADV34318.1| Translation factor SUA5 protein [Mycoplasma fermentans M64] Length = 151 Score = 82.4 bits (203), Expect = 8e-14, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 63/162 (38%), Gaps = 21/162 (12%) Query: 29 TETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFW 88 T+TV G+ + LY +KKRP ++ V+ + + + LA +W Sbjct: 11 TDTVTGIGG-PICQETLDALYYLKKRPKSKKIMILVASLKQAQSFKEWTKEANDLALKYW 69 Query: 89 PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISI 148 PG +++ + FR+P P+ + SAN S Q Sbjct: 70 PGAYSIITNNQ----------------GFRMPNNKKLLEFLEKNGPMYVTSANVSTQE-P 112 Query: 149 TNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 ++K + E+ + + G K G+ S I++ Q + +R Sbjct: 113 IDIKDA--HKVFPEVKNVYNFGKGK-GVASHIIDAQSNEWLR 151 >gi|238809827|dbj|BAH69617.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 166 Score = 82.4 bits (203), Expect = 8e-14, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 63/162 (38%), Gaps = 21/162 (12%) Query: 29 TETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFW 88 T+TV G+ + LY +KKRP ++ V+ + + + LA +W Sbjct: 26 TDTVTGIGG-PICQETLDALYYLKKRPKSKKIMILVASLKQAQSFKEWTKEANDLALKYW 84 Query: 89 PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISI 148 PG +++ + FR+P P+ + SAN S Q Sbjct: 85 PGAYSIITNNQ----------------GFRMPNNKKLLEFLEKNGPMYVTSANVSTQE-P 127 Query: 149 TNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 ++K + E+ + + G K G+ S I++ Q + +R Sbjct: 128 IDIKDA--HKVFPEVKNVYNFGKGK-GVASHIIDAQSNEWLR 166 >gi|16331389|ref|NP_442117.1| hypothetical protein slr0006 [Synechocystis sp. PCC 6803] gi|1001560|dbj|BAA10187.1| slr0006 [Synechocystis sp. PCC 6803] Length = 217 Score = 82.4 bits (203), Expect = 8e-14, Method: Composition-based stats. Identities = 45/177 (25%), Positives = 71/177 (40%), Gaps = 9/177 (5%) Query: 31 TVYGLAVDSRNPTAIRRLYEIKKRPAMNPL-ICHVSDISMVKKHASVDPLSLHLAKLFWP 89 T Y L V+ +P A+ +L K+ PL I D +M A + P + L LF P Sbjct: 38 TTYVLVVNGASPRAVAQLRAFKQFDKDQPLGILTRGDRAM--DVAKIPPAAKKLMGLF-P 94 Query: 90 GPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISIT 149 P+TL+++ L D P T + P F L+ PL +A G+ Sbjct: 95 LPITLIVEALPKLD--PGITQGFRNIFIACPDAFVFDLVGAMPFPLVCATAKVGGE--PV 150 Query: 150 NVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAI 206 S ++PLI DGG + T+++ I+ G + + L+ I Sbjct: 151 TSFEAASRYFEGQVPLIGDGGRCRYARRGTLIDCTL-PLPTIMNFGPISFDDLRPLI 206 >gi|83319443|ref|YP_424138.1| hypothetical protein MCAP_0147 [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|83283329|gb|ABC01261.1| conserved hypothetical protein [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 166 Score = 82.4 bits (203), Expect = 8e-14, Method: Composition-based stats. Identities = 39/164 (23%), Positives = 67/164 (40%), Gaps = 20/164 (12%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 +TD+ + KA E L + +PT+T+YGL+ I ++ ++KK PLI +S Sbjct: 2 LTDTK-INKAIELLKNNQIVILPTDTIYGLSAIYSLENQI-KINQVKKADINKPLIVLIS 59 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFT 124 + + K +D P T++ S+ + R V Sbjct: 60 SLDQLDKLDILDLTDKDFLLNT--DPTTVIFKTTSS------------SIAIRLVKRNDI 105 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 K++I G P+ S N G +TN K +++ K I + D Sbjct: 106 KQIINNTG-PIISTSVNIHGFDPLTNKKDLIN--FNKNIEVFFD 146 >gi|295097293|emb|CBK86383.1| [NiFe] hydrogenase maturation protein HypF [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 738 Score = 82.4 bits (203), Expect = 8e-14, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 55/159 (34%), Gaps = 20/159 (12%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59 + T +AL A L+ G +A V GL D+ NP A+R+L K+RP P Sbjct: 193 AATRESALSAAVAMLEGGGIVA-----VKGLGGFHLVCDALNPQAVRKLRARKQRP-TRP 246 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 L + HA P ++ P ++ L T + Sbjct: 247 LAVMI-------PHADDLPEAIQTLLRS-PAAPIVLTPKACLPAFPEEIAPGLDTVGVML 298 Query: 120 PCGFTKKLI-ETYGHPLAIPSANRSGQISITNVKHILSS 157 P + L+ PL + S N SG + + L Sbjct: 299 PANPLQHLLMLDCQRPLVMTSGNLSGHPPAISNQQALEE 337 >gi|315180283|gb|ADT87197.1| hydrogenase maturation protein HypF [Vibrio furnissii NCTC 11218] Length = 766 Score = 82.4 bits (203), Expect = 8e-14, Method: Composition-based stats. Identities = 39/173 (22%), Positives = 64/173 (36%), Gaps = 23/173 (13%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 A+ +A E L AG IA+ GL D+ + A+ RL E+K R PL VS Sbjct: 202 AIERAAEQLIAGGVIALK-----GLGGFHLVCDATSLQAVARLRELKHRAR-KPLAVMVS 255 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLST----TDIHPLSTANLKTACFR--- 118 D++ K + + L K P+ L+ T + ++ Sbjct: 256 DVAQAKHYVQGEALEWQTLKSQA-SPIVLMHKAEHTDAGRVPVADNVAPDVDCLGVMLAY 314 Query: 119 VPCGFTK-KLIETYGH--PLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 P ++ G PL + SAN SG T + + + + ++D Sbjct: 315 TPLHLLLIDALQQRGCFAPLVMTSANVSGLPLATEAQQVF-AMFGSSLDCVLD 366 >gi|307721227|ref|YP_003892367.1| (NiFe) hydrogenase maturation protein HypF [Sulfurimonas autotrophica DSM 16294] gi|306979320|gb|ADN09355.1| (NiFe) hydrogenase maturation protein HypF [Sulfurimonas autotrophica DSM 16294] Length = 756 Score = 82.0 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 68/158 (43%), Gaps = 14/158 (8%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59 ++ D+N + + + + G IA+ GL D+ N +A+++L + K RP P Sbjct: 201 TVNDTNPIEQCAQLIQNGKSIALK-----GLGGFHIVCDATNESAVKQLRKNKHRP-TKP 254 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 L I +KK A + L L P+ +V++ TT + N+ + Sbjct: 255 LAVMFLSIKEIKKVAKLSKKDEELI-LSRERPI-VVVEKKDTTFLADSIAPNIDRIGVFL 312 Query: 120 PCGFTKKLIET-YGHPLAIPSANRSGQISITNVKHILS 156 P +L+ T P+ SAN S + +T+ K I+ Sbjct: 313 PYTPLHELLLTILKTPIVATSANVSDEPIVTDEKEIVK 350 >gi|304411350|ref|ZP_07392964.1| (NiFe) hydrogenase maturation protein HypF [Shewanella baltica OS183] gi|307305328|ref|ZP_07585076.1| (NiFe) hydrogenase maturation protein HypF [Shewanella baltica BA175] gi|304350205|gb|EFM14609.1| (NiFe) hydrogenase maturation protein HypF [Shewanella baltica OS183] gi|306911631|gb|EFN42056.1| (NiFe) hydrogenase maturation protein HypF [Shewanella baltica BA175] Length = 803 Score = 82.0 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 44/194 (22%), Positives = 79/194 (40%), Gaps = 22/194 (11%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLI 61 TD L A + L G +AI GL D+R+ A+ L K+R A PL Sbjct: 229 TDLAILTAAADRLHQGQILAIK-----GLGGFHLICDARSDKAVNTLRLRKQRQA-KPLA 282 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120 ++DI+M + + + + P+ +++ + D+ P NL +P Sbjct: 283 VMMTDITMAQHYVTGTDAEWRVL-SSQERPI-VLMSSRAEHDLSPAVAPNLNKLGVFLPY 340 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L+ + PL SAN SG+ IT+ ++ + + I+D I Sbjct: 341 TPLHHLLLGLFKGPLVATSANVSGEPIITDCDELIHH-LSHVVDAIVDHNRP-------I 392 Query: 181 VNVQCEKKVRILRP 194 +N + V++++P Sbjct: 393 INGCDDSVVQVIQP 406 >gi|187735892|ref|YP_001878004.1| (NiFe) hydrogenase maturation protein HypF [Akkermansia muciniphila ATCC BAA-835] gi|187425944|gb|ACD05223.1| (NiFe) hydrogenase maturation protein HypF [Akkermansia muciniphila ATCC BAA-835] Length = 775 Score = 82.0 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 58/323 (17%), Positives = 104/323 (32%), Gaps = 69/323 (21%) Query: 13 RKACEFLDAGLPIAIPTETVYGLA-------VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + L GL +A+ L D+ + A+RRL +K+R A P V Sbjct: 216 AQVAWVLADGLIVAL-------LGVGGFQLLADASSEAAVRRLRRLKERDA-KPFAVMVP 267 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125 D++ ++ + L P ++ D+ P + +P Sbjct: 268 DVAAAERLCRLSEEERRLLTS--PAAPIVLARGGKDVDLAPSVCMFSRFVGIMLPSSPLH 325 Query: 126 KLI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIVNV 183 L+ + +G PL + S N SG+ +V+ L + + + + ++ ++V V Sbjct: 326 ALLMDVWGKPLVVTSGNLSGEPLCVSVEEGL-EKLGHVADVFLVHDRPVVRPVDDSVVRV 384 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 + + + R G YAPR V + Sbjct: 385 TDGRAMMVRRARG---------------------------------YAPR-PVWRTSAAA 410 Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAF-NLF----NYM-KIADDSGASSI 297 AL I ++ + ++ G L AA N F + + D I Sbjct: 411 PDMLALGAGLKNTICWLKRGVAVMSQH-LGDLSSAASLNAFERTVEALGRTLDAV-PQVI 468 Query: 298 AFSSIPNHG---LGIAINNRLER 317 A + P+ LG RL R Sbjct: 469 AVDAHPDGPTFALGR----RLAR 487 >gi|315637441|ref|ZP_07892652.1| hydrogenase maturation protein HypF [Arcobacter butzleri JV22] gi|315478231|gb|EFU68953.1| hydrogenase maturation protein HypF [Arcobacter butzleri JV22] Length = 748 Score = 82.0 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 38/179 (21%), Positives = 71/179 (39%), Gaps = 19/179 (10%) Query: 1 MQIMSITDS------NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLY 49 M + +I +S A+ + + G IA V G+ D+ N + +L Sbjct: 187 MTLYNINNSILSYNMKAIEQTANLIKDGYIIA-----VKGMGGFHIVCDATNDKVVNKLR 241 Query: 50 EIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLST 109 EIK RP P S I+ +K++ +++ + P+ LV ++T ++ Sbjct: 242 EIKNRP-NKPFAVMFSSINSIKQYTNINYQEEEILTSK-EKPIVLVKKRINTNLSSYIAP 299 Query: 110 ANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 K CF CG L + +P+ SAN + I + I+ + + ++D Sbjct: 300 NISKLGCFIANCGIHHLLFKYLQNPIVATSANLKDEPIIRSKDEII-EKLGSIVDFVLD 357 >gi|238753080|ref|ZP_04614532.1| Carbamoyltransferase hypF [Yersinia rohdei ATCC 43380] gi|238708691|gb|EEQ00957.1| Carbamoyltransferase hypF [Yersinia rohdei ATCC 43380] Length = 762 Score = 82.0 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 52/223 (23%), Positives = 83/223 (37%), Gaps = 33/223 (14%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICHV 64 +AL++A + L AG +AI GL D+ N A+ RL + K RP+ PL + Sbjct: 209 SALQQAADALLAGQIVAIK-----GLGGFHLAVDATNAGAVARLRQRKHRPS-KPLAVML 262 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 DI+ + ++ L L P +++ + + +L +P Sbjct: 263 PDINWLAACVQSSEMTALLRLLRSPAAPIVLVTKQPQSPVCAQIAPDLPEIGVMLPANPL 322 Query: 125 KK-LIETYGHPLAIPSANRSGQISITNVKHILSS--SICKEIPLIIDGGISKIGLESTIV 181 + L++ PL + S N SG+ + + LS+ I L IV Sbjct: 323 QHLLLQQVARPLVMTSGNGSGKPPALSNEQALSALSDIADHWLLHDRD----------IV 372 Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPG 224 + VR G E L+RA Y D P PG Sbjct: 373 QRADDSLVRFTAHGA---EMLRRARG----YVPDAFELP--PG 406 >gi|325294647|ref|YP_004281161.1| Acylphosphatase [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065095|gb|ADY73102.1| Acylphosphatase [Desulfurobacterium thermolithotrophum DSM 11699] Length = 756 Score = 82.0 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 36/153 (23%), Positives = 64/153 (41%), Gaps = 14/153 (9%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 +A+R E+L+ G IA+ GL D+ N A++ L + K+R P Sbjct: 204 DAIRLTIEYLEKGKIIALK-----GLGGFHLICDATNEKAVKELRKRKQR-EEKPFAVMF 257 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123 D KK+A + L K P+ ++L+ TD+ + KT +P Sbjct: 258 PDFETTKKYAYISSLEKRALKSV-ESPI-VILEKKENTDLAYSISPENKTIGAFLPYTPL 315 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILS 156 +++ +G P+ SAN + + I + +S Sbjct: 316 HHIILKDFGKPIVATSANLTDEPIIKENEEAIS 348 >gi|260768576|ref|ZP_05877510.1| [NiFe] hydrogenase metallocenter assembly protein HypF [Vibrio furnissii CIP 102972] gi|260616606|gb|EEX41791.1| [NiFe] hydrogenase metallocenter assembly protein HypF [Vibrio furnissii CIP 102972] Length = 766 Score = 82.0 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 39/173 (22%), Positives = 64/173 (36%), Gaps = 23/173 (13%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 A+ +A E L AG IA+ GL D+ + A+ RL E+K R PL VS Sbjct: 202 AIERAAEQLIAGGVIALK-----GLGGFHLVCDATSLQAVARLRELKHRAR-KPLAVMVS 255 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLST----TDIHPLSTANLKTACFR--- 118 D++ K + + L K P+ L+ T + ++ Sbjct: 256 DVAQAKHYVQGEALEWQTLKSQA-SPIVLMHKAEHTDAGRAPVADNVAPDVDCLGVMLAY 314 Query: 119 VPCGFTK-KLIETYGH--PLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 P ++ G PL + SAN SG T + + + + ++D Sbjct: 315 TPLHLLLIDALQQRGCFAPLVMTSANVSGLPLATEAQQVF-AMFGASLDSVLD 366 >gi|240047165|ref|YP_002960553.1| hypothetical protein MCJ_000330 [Mycoplasma conjunctivae HRC/581] gi|239984737|emb|CAT04711.1| HYPOTHETICAL PROTEIN MCJ_000330 [Mycoplasma conjunctivae] Length = 254 Score = 81.6 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 39/164 (23%), Positives = 64/164 (39%), Gaps = 17/164 (10%) Query: 29 TETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS--VDPLSLHLAKL 86 T+TV G+ N + LY IK R +I + +I V P + A Sbjct: 105 TDTVVGIGTFVNNSN-LELLYSIKNREKNKKIIILLGNIEQANSFVDQEVFPKLYYSADK 163 Query: 87 FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQI 146 +WPG TL+L + N R+P + P + SAN SG+ Sbjct: 164 YWPGNTTLLLKSKN----------NNGKIGLRIPKQDELIKLLNNKGPAYVTSANISGK- 212 Query: 147 SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 N++ + ++ I + G G+ STI+N + + +R Sbjct: 213 QPLNIQDAIKVFW--QVKNIYNFGEG-SGIPSTIINFEDKSIIR 253 >gi|148241003|ref|YP_001220504.1| carbamoyltransferase hypF [Bradyrhizobium sp. BTAi1] gi|146411379|gb|ABQ39832.1| Carbamoyltransferase hypF [Bradyrhizobium sp. BTAi1] Length = 755 Score = 81.6 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 67/161 (41%), Gaps = 16/161 (9%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMN 58 +++ + +AL A + L GL +A V G+ D+ +A+ RL + K RP Sbjct: 204 LAVENDDALAAAVDLLRRGLTVA-----VKGIGGYHLLCDATRESAVARLRQSKNRP-HK 257 Query: 59 PLICHVSDISMV--KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 P V + ++ A++D + A L P +++ + + P + + Sbjct: 258 PFAVMVPTDDKLAWRRLAAIDVVEE--AALLDPSRPIVLVRKRPESPLAPAVASGMAYVG 315 Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILS 156 +P L++ + P+ SAN SG+ +T+ + Sbjct: 316 LMLPYSPLHHLLLDAFEKPVVATSANISGEPVLTDAADVER 356 >gi|126174110|ref|YP_001050259.1| (NiFe) hydrogenase maturation protein HypF [Shewanella baltica OS155] gi|125997315|gb|ABN61390.1| (NiFe) hydrogenase maturation protein HypF [Shewanella baltica OS155] Length = 837 Score = 81.6 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 44/194 (22%), Positives = 77/194 (39%), Gaps = 22/194 (11%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLI 61 TD L A + L G +AI GL D+RN A+ L K+R A PL Sbjct: 263 TDLAVLTAAADRLHQGQILAIK-----GLGGFHLICDARNDNAVNTLRLRKQRQA-KPLA 316 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120 ++DI M + + + + P+ +++ + D+ NL +P Sbjct: 317 VMMADIQMAQHYVTGTDAEWQVL-SSQERPI-VLMSSRAEHDLSLAVAPNLNKLGVFLPY 374 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L+ + PL SAN SG+ IT+ ++ + + I+D I Sbjct: 375 TPLHHLLLGLFKGPLVATSANVSGEPIITDCDELIRH-LSHVMDAIVDHNRP-------I 426 Query: 181 VNVQCEKKVRILRP 194 +N + V++++P Sbjct: 427 INGCDDSVVQVIQP 440 >gi|198282996|ref|YP_002219317.1| (NiFe) hydrogenase maturation protein HypF [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667633|ref|YP_002425200.1| [NiFe] hydrogenase maturation protein HypF [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247517|gb|ACH83110.1| (NiFe) hydrogenase maturation protein HypF [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519846|gb|ACK80432.1| [NiFe] hydrogenase maturation protein HypF [Acidithiobacillus ferrooxidans ATCC 23270] Length = 803 Score = 81.6 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 40/203 (19%), Positives = 79/203 (38%), Gaps = 16/203 (7%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLI 61 T +A+ A L G + I GL D+ N A+ L K RP PL Sbjct: 211 TQLDAVDAATNLLKCGEIVLIK-----GLGGFHLACDATNDRAVSGLRLRKHRP-HKPLA 264 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120 D+ +V+++A V L + P+ ++L+ L + P ++ F +P Sbjct: 265 LMARDLEVVRRYAHVSRAEEKLLQSH-QAPI-VLLNRLDNDSLAPGIAPGMRRLGFMLPY 322 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LEST 179 L+ P+ + S N S +T+ + + + ++ + I ++ + Sbjct: 323 TPLHHLLMRRMDRPIVLTSGNLSDAPQVTDDAAAVRA-LRGVTDWMLTHDRAIINRVDDS 381 Query: 180 IVNVQCEKKVRILRPGGLEIETL 202 +V + + + + R G E+L Sbjct: 382 VVQMAGDDTMILRRGRGYAPESL 404 >gi|260789486|ref|XP_002589777.1| hypothetical protein BRAFLDRAFT_90450 [Branchiostoma floridae] gi|229274960|gb|EEN45788.1| hypothetical protein BRAFLDRAFT_90450 [Branchiostoma floridae] Length = 145 Score = 81.6 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 62/126 (49%), Gaps = 9/126 (7%) Query: 82 HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140 L + PGP+T+V+ T ++ + RVP F ++L ET P+A+ SA Sbjct: 2 ELLQDLLPGPVTVVMQR--TAALNTNLNPSTDLVGIRVPQHKFMRQLAETCMEPIALTSA 59 Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE----STIVNVQCEKKVRILRPGG 196 N S + +++ ++ ++ L++DGG + ST+V++ E + R+LR G Sbjct: 60 NTSAAGNTIDIQE--FENLWPQLDLVLDGGRLESTQAVREGSTVVDLSVEGQFRVLRVGC 117 Query: 197 LEIETL 202 + T+ Sbjct: 118 AYMSTV 123 >gi|313606730|gb|EFR83446.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes FSL F2-208] Length = 52 Score = 81.6 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 26/52 (50%) Query: 275 LKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326 + E A +L+ ++ D + I P LG AI NRLE+AA R ++ Sbjct: 1 MDEIATSLYKGLRAFDHAEVDIIFAEVYPETELGAAIMNRLEKAAGNRRITE 52 >gi|332666647|ref|YP_004449435.1| SUA5/yciO/yrdC domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332335461|gb|AEE52562.1| SUA5/yciO/yrdC domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 200 Score = 81.6 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 62/152 (40%), Gaps = 4/152 (2%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 + L +G + +PT+T++ +A + + RL ++K++ + VS + M+K++ Sbjct: 22 KILSSGGLVLLPTDTLWSIACLPSHSNTLNRLIQLKRQKYADNFELLVSSVGMLKQYVEH 81 Query: 77 DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLIETYGHPL 135 L + PLT++ D + + L A R V F L+E PL Sbjct: 82 LHPRLETLLAYHLRPLTMIFDNPTNLSSNALDAAG--NIHIRLVQDPFCAALLEHLNQPL 139 Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLII 167 A+ + N I S I + ++ Sbjct: 140 ISTFAHVRDSVPPMNFGAISSEIIQG-VDYVV 170 >gi|319790090|ref|YP_004151723.1| (NiFe) hydrogenase maturation protein HypF [Thermovibrio ammonificans HB-1] gi|317114592|gb|ADU97082.1| (NiFe) hydrogenase maturation protein HypF [Thermovibrio ammonificans HB-1] Length = 747 Score = 81.6 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 39/200 (19%), Positives = 79/200 (39%), Gaps = 24/200 (12%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 + A+++ C ++ G +A V GL D+ N A+R L K R P Sbjct: 198 EDEAVKEVCRWITQGKIVA-----VKGLGGFHLICDATNEKAVRELRRRKNR-EEKPFAV 251 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPG---PLTLVLDLLSTTDIHPLSTANLKTACFRV 119 D++ +K+HA + P L ++ G P+ ++L + + P + + +T + Sbjct: 252 MFKDLNQLKEHAYLSP----LEEIAVTGVESPI-VILRKKKGSTLAPSVSPDTETVGAFL 306 Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG--GISKIGL 176 P + PL S N + + + + ++ + + I++ Sbjct: 307 PYTPLHHLICREVNRPLVATSCNITDEPIMKENSEAI-EALGSLLDGALCHNRPIARRCD 365 Query: 177 ESTIVNVQCEKKVRILRPGG 196 +S +V V ++ V I R G Sbjct: 366 DS-VVRVIGDRVVPIRRSRG 384 >gi|157737664|ref|YP_001490347.1| transcriptional regulatory protein HypF [Arcobacter butzleri RM4018] gi|157699518|gb|ABV67678.1| transcriptional regulatory protein HypF [Arcobacter butzleri RM4018] Length = 749 Score = 81.3 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 71/179 (39%), Gaps = 19/179 (10%) Query: 1 MQIMSITDS------NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLY 49 M + +I +S A+ + + G IA V G+ D+ N + +L Sbjct: 188 MTLYNINNSILSYNIKAIEQTANLIKDGYVIA-----VKGIGGFHIVCDATNDKVVNKLR 242 Query: 50 EIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLST 109 EIK RP P ++I+ +K++ +++ + P+ LV +T ++ Sbjct: 243 EIKNRP-NKPFAVMFNNINSIKQYTNMNYQEEEILTSK-EKPIVLVKKRPNTNLSSYIAP 300 Query: 110 ANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 K CF CG L + +P+ SAN + I + I+ + + ++D Sbjct: 301 NISKLGCFIANCGIHHLLFKYLQNPIVATSANLKDEPIIRSKDEIIG-KLGNIVDFVLD 358 >gi|321309523|ref|YP_004191852.1| putative translation factor/ribosome maturation factor [Mycoplasma haemofelis str. Langford 1] gi|319801367|emb|CBY92013.1| putative translation factor / ribosome maturation factor [Mycoplasma haemofelis str. Langford 1] Length = 156 Score = 81.3 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 46/179 (25%), Positives = 70/179 (39%), Gaps = 39/179 (21%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRR----LYEIKKRPAMNPLICHVSDISMVKKHA 74 + +G I T++V+G+ I + +Y +KKRP LI +S S + Sbjct: 9 IKSGKAAIIATDSVFGI---------ISKDKDLIYSLKKRPKEKQLILFISSASEL---- 55 Query: 75 SVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETY 131 P+ L +L WPG T++ +RVP I Sbjct: 56 -PSPIPKDLEELVTSRWPGTFTIIYKGQ----------------GYRVPESNLLIKILKK 98 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 PL SAN SG+ + +++ SI E L I G + G STI + +K VR Sbjct: 99 TGPLWSSSANLSGEPVVKDLEEA--KSIFGEGILYIKGDVVPTGTPSTIYDYDNKKLVR 155 >gi|148377715|ref|YP_001256591.1| hypothetical protein MAG_4520 [Mycoplasma agalactiae PG2] gi|148291761|emb|CAL59150.1| Conserved hypothetical protein [Mycoplasma agalactiae PG2] Length = 151 Score = 80.9 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 62/162 (38%), Gaps = 21/162 (12%) Query: 29 TETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFW 88 T+TV G+ N ++ +Y +K RP +I V + ++ + + A +W Sbjct: 11 TDTVTGIGG-PVNDNTLKSIYYLKNRPISKKIIILVGSVEQAREFKEWNHEADEFASKYW 69 Query: 89 PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISI 148 PG +++++ FR+P P+ + SAN SGQ I Sbjct: 70 PGAYSVIVNNQ----------------GFRMPNNLKLCQFLLKNGPMYVTSANISGQEPI 113 Query: 149 TNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 + +S + + D G S I N+ +K +R Sbjct: 114 EISE---ASKYFPLVKNVYDFGKGN-NKASQIYNLDEKKWIR 151 >gi|197285366|ref|YP_002151238.1| hydrogenase maturation protein [Proteus mirabilis HI4320] gi|194682853|emb|CAR43165.1| hydrogenase maturation protein [Proteus mirabilis HI4320] Length = 766 Score = 80.9 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 41/204 (20%), Positives = 75/204 (36%), Gaps = 16/204 (7%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 AL +AC+ L AG +A V G+ D+RN ++ RL K RPA PL Sbjct: 200 ERALTQACQALLAGKIVA-----VKGIGGFHLVCDARNSESVARLRARKHRPA-KPLAVM 253 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWP--GPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 ++ ++K + + + P+ L+ ++ + L L +P Sbjct: 254 LTGTEQIQKPSDNAEFYSKVIETLTSTAAPIVLIPKEIAPISLSELIAPGLTEVGVMLPA 313 Query: 122 GFTKKLIETYGH-PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-ST 179 + L+ PL + S N +G + L + L + I + Sbjct: 314 NPLQHLLAHETQIPLVMTSGNATGHTPALTNEEALI-QLGDIAELFLMHNREIIQRADDS 372 Query: 180 IVNVQCEKKVRILRPGGLEIETLK 203 +V ++ + V I R G + + Sbjct: 373 LVRIEDGQCVMIRRSRGYVPDAIA 396 >gi|269140246|ref|YP_003296947.1| hydrogenase maturation protein [Edwardsiella tarda EIB202] gi|267985907|gb|ACY85736.1| hydrogenase maturation protein [Edwardsiella tarda EIB202] gi|304560076|gb|ADM42740.1| (NiFe) hydrogenase metallocenter assembly protein HypF [Edwardsiella tarda FL6-60] Length = 774 Score = 80.5 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 61/154 (39%), Gaps = 15/154 (9%) Query: 14 KAC-EFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 +A LDAG +A V GL D+ N AI RL E K+RP PL + D+ Sbjct: 204 QAVTRALDAGHIVA-----VKGLGGFHLACDAENDAAIARLRERKRRP-GKPLALMLPDL 257 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKK 126 S + ++ P + P ++ + +++ + P L +P Sbjct: 258 SWLARYCRTAPD--DGLQALLSSPAAPIVLIPASSAVPPRVAPGLDEVGVMLPSTPLHHL 315 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSIC 160 L+ G PL + S N +GQ + L+ + Sbjct: 316 LMARIGRPLVMTSGNANGQPPALDNAQALTDLVD 349 >gi|291320378|ref|YP_003515641.1| hypothetical protein MAGa4740 [Mycoplasma agalactiae] gi|290752712|emb|CBH40686.1| Conserved hypothetical protein [Mycoplasma agalactiae] Length = 151 Score = 80.5 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 65/164 (39%), Gaps = 25/164 (15%) Query: 29 TETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFW 88 T+TV G+ N ++ +Y +K RP +I V + ++ + + A +W Sbjct: 11 TDTVTGIGG-PVNDNTLKSIYYLKNRPISKKIIILVGSVGQAREFKEWNHEADEFAAKYW 69 Query: 89 PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG--FTKKLIETYGHPLAIPSANRSGQI 146 PG +++++ FR+P + LI+ P+ + SAN SGQ Sbjct: 70 PGAYSVIVNNQ----------------GFRMPNNLKLCQFLIK--NGPMYVTSANISGQE 111 Query: 147 SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 ++ S + + D G S I N+ +K +R Sbjct: 112 -PIDISEA--SKYFPLVKNVYDFGKGN-NKASQIYNLDEKKWIR 151 >gi|113970155|ref|YP_733948.1| (NiFe) hydrogenase maturation protein HypF [Shewanella sp. MR-4] gi|113884839|gb|ABI38891.1| (NiFe) hydrogenase maturation protein HypF [Shewanella sp. MR-4] Length = 836 Score = 80.5 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 67/165 (40%), Gaps = 17/165 (10%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 L A E L G +AI GL D+ N A+ +L + K+R A PL + Sbjct: 245 VLSAAAEKLAQGQILAIK-----GLGGFHLMCDATNTLAVNQLRQRKQRKA-KPLAVMMP 298 Query: 66 DISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123 I + K++ + + L+ P +++ L ++ N+ +P Sbjct: 299 SIEVAKRYVTGTQVEWQTLSSQERP---IVLMQALDKHNLSHEIAPNIPKLGIFLPYTPL 355 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 L+ + PL SAN SG+ IT+ ++S + + I+D Sbjct: 356 HHLLLGQFNGPLVATSANVSGEPIITDCDELIS-QLGHVVDAIVD 399 >gi|154174910|ref|YP_001408291.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter curvus 525.92] gi|112802760|gb|EAU00104.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter curvus 525.92] Length = 739 Score = 80.5 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 66/173 (38%), Gaps = 16/173 (9%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPA 56 +I+S D A ++A + ++ G +A V GL D+ + A+ L + K RP+ Sbjct: 193 KILSKNDEAA-KQAAKLINEGKILA-----VKGLGGFHLVCDAHDENAVNLLRKRKNRPS 246 Query: 57 MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 P ++ + A + L P+ ++L + + P NL Sbjct: 247 -KPFAIMSKNLQSARNLAQISDAQAKLLSSNL-KPI-VLLQSAKDSPLAPSVAPNLNKVG 303 Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 + G L E H + SAN SG++ I + K L + +D Sbjct: 304 VMLAFSGIHLLLFEYLNHDIVATSANVSGEVVIYDEKQ-LQDKLGGVFDYYLD 355 >gi|153855436|ref|ZP_01996567.1| hypothetical protein DORLON_02581 [Dorea longicatena DSM 13814] gi|149752090|gb|EDM62021.1| hypothetical protein DORLON_02581 [Dorea longicatena DSM 13814] Length = 792 Score = 80.1 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 38/202 (18%), Positives = 71/202 (35%), Gaps = 23/202 (11%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 A+ + + G +AI G+ D+ N A++RL +K RPA P Sbjct: 212 TAIIATRKMIHDGGIVAIK-----GIGGFHLCCDATNEEAVQRLRTLKNRPA-KPFAVMA 265 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPC 121 D+ VK+ V+ + + P+ L+ + D + +P Sbjct: 266 RDVEAVKRECLVNEVQEEILDGH-QKPILLLEKRKKSADSTGLCKSVAPGNPKVGVMLPY 324 Query: 122 GFTKKLIETYG----HP--LAIPSANRSGQISITNVKHILSSSICKEIPLII-DGGISKI 174 + L+ Y P L + S N SG + K + + LI+ +I Sbjct: 325 APVQMLLFQYDDGIQMPDFLVMTSGNISGAPICRDDKEAV-EELSHLCDLILSHDRKIRI 383 Query: 175 GLESTIVNVQCEKKVRILRPGG 196 + ++++ + I R G Sbjct: 384 RADDSVMDFYKGEPYMIRRSRG 405 >gi|153809929|ref|ZP_01962597.1| hypothetical protein RUMOBE_00310 [Ruminococcus obeum ATCC 29174] gi|149834107|gb|EDM89187.1| hypothetical protein RUMOBE_00310 [Ruminococcus obeum ATCC 29174] Length = 802 Score = 80.1 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 73/199 (36%), Gaps = 20/199 (10%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 A+ A + + G +AI G+ D+ N TA+R+L ++K+RP M P Sbjct: 200 EAITYARKTIAGGGIVAIK-----GIGGFHLCCDASNETAVRKLRQLKRRP-MKPFAVMA 253 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 ++ V+K V + P+ L+ + P +P Sbjct: 254 KNLEAVRKECEVSAEQTRILDGH-QKPILLLDKKKEAKILCPSVAPGNPKVGVMLPYAPV 312 Query: 125 KKLIETYG----HP--LAIPSANRSGQISITNVKHILSSSICKEIPLII-DGGISKIGLE 177 + LI TY P L + S N SG + + + + ++ +I + Sbjct: 313 QLLIFTYDDGIEMPEFLVMTSGNTSGAPICRDDQEA-EAELSGFCDCMLSHDRKIRIRAD 371 Query: 178 STIVNVQCEKKVRILRPGG 196 ++++ ++ I R G Sbjct: 372 DSVMDFYEDRPYMIRRSRG 390 >gi|271501242|ref|YP_003334267.1| (NiFe) hydrogenase maturation protein HypF [Dickeya dadantii Ech586] gi|270344797|gb|ACZ77562.1| (NiFe) hydrogenase maturation protein HypF [Dickeya dadantii Ech586] Length = 766 Score = 80.1 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 41/200 (20%), Positives = 75/200 (37%), Gaps = 12/200 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 +A+ +A L AG +A V GL D+ + A+ RL E K RPA PL Sbjct: 206 DDAIMQAATALCAGQIVA-----VKGLGGFHLACDATHAQAVTRLRERKHRPA-KPLAVM 259 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 + + + + V+ + L + P ++L L + L +P Sbjct: 260 LPGADWLAQCSCVENSAPALRLMQSPAAPVVLLPLRHDGVLAAGIAPGLDEVGLMLPANP 319 Query: 124 TKK-LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 + L+ G PL + S N SG+ + L+ ++ + ++V Sbjct: 320 LQHMLLAAVGRPLVMTSGNASGKPPALDNTQALAELAAIADLWLLHDRDIVQRADDSVVR 379 Query: 183 VQCEKKVRILRPGGLEIETL 202 +Q ++ + R G + L Sbjct: 380 IQGDRAEMLRRARGYVPDAL 399 >gi|114047655|ref|YP_738205.1| (NiFe) hydrogenase maturation protein HypF [Shewanella sp. MR-7] gi|113889097|gb|ABI43148.1| (NiFe) hydrogenase maturation protein HypF [Shewanella sp. MR-7] Length = 840 Score = 80.1 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 66/165 (40%), Gaps = 17/165 (10%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 L A E L G +AI GL D+ N A+ +L + K+R A PL + Sbjct: 249 VLSAAAEKLAQGQILAIK-----GLGGFHLMCDATNTLAVNQLRQRKQRKA-KPLAVMMP 302 Query: 66 DISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123 I + K++ + L+ P +++ L ++ N+ +P Sbjct: 303 SIEVAKRYVTGTQAEWQTLSSQERP---IVLMQALDKHNLSHQIAPNIPKLGIFLPYTPL 359 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 L+ + PL SAN SG+ IT+ ++S + + I+D Sbjct: 360 HHLLLGQFNGPLVATSANVSGEPIITDCDELIS-QLGHVVDAIVD 403 >gi|293363971|ref|ZP_06610707.1| conserved hypothetical protein [Mycoplasma alligatoris A21JP2] gi|292552461|gb|EFF41235.1| conserved hypothetical protein [Mycoplasma alligatoris A21JP2] Length = 152 Score = 79.7 bits (196), Expect = 5e-13, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 65/159 (40%), Gaps = 21/159 (13%) Query: 29 TETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFW 88 T+TV G+ N +++++Y +K RP ++ V I ++ + + A+ +W Sbjct: 11 TDTVCGIGG-PINNESLKKIYFLKDRPLDKKIMIVVGSIDQARQFKQWNNKADEFAQKYW 69 Query: 89 PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISI 148 PG ++++++ FR+P + P+ + SAN SG Sbjct: 70 PGAVSIIVNNQ----------------GFRMPNSLKMQKFLLKNGPMYLTSANLSGND-P 112 Query: 149 TNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 N++ ++ KEI + D S I NV + Sbjct: 113 LNLEQA--KNVFKEITNVYDFCK-PSNKPSDIYNVDTNQ 148 >gi|309791091|ref|ZP_07685626.1| Hydrogenase maturation protein HypF [Oscillochloris trichoides DG6] gi|308226875|gb|EFO80568.1| Hydrogenase maturation protein HypF [Oscillochloris trichoides DG6] Length = 771 Score = 79.7 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 37/192 (19%), Positives = 65/192 (33%), Gaps = 17/192 (8%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 L A L G +A+ G+ D RN A+ RL K RPA PL D Sbjct: 203 LNAALTALRQGQIVALK-----GIGGYQLLVDPRNAEAVARLRLRKHRPA-KPLALMARD 256 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLL-STTDIHPLSTANLKTACFRVPC-GFT 124 + +D ++ L P+ L+ + + + L +PC Sbjct: 257 LEQAAALVQIDQVAAELLTSVA-APIVLLPRIPHPSIALADLVAPGHPYLGVMLPCSPLH 315 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII-DGGISKIGLESTIVNV 183 L+ ++ PL S N S + + + + + + ++ ++V V Sbjct: 316 HLLLRSFDGPLVATSGNLSDEPICIDDTEA-HQRLGQIADAFLSHNRPIERHVDDSVVQV 374 Query: 184 QCEKKVRILRPG 195 R+LR Sbjct: 375 -VAGIPRMLRRA 385 >gi|157148250|ref|YP_001455569.1| hypothetical protein CKO_04067 [Citrobacter koseri ATCC BAA-895] gi|157085455|gb|ABV15133.1| hypothetical protein CKO_04067 [Citrobacter koseri ATCC BAA-895] Length = 780 Score = 79.3 bits (195), Expect = 7e-13, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 54/153 (35%), Gaps = 20/153 (13%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 AL+ A L AG +AI G+ D++N A+ L K+RPA PL + Sbjct: 236 ALQAAVAMLKAGGIVAIK-----GIGGFHLACDAQNDEAVAMLRARKRRPA-KPLAVMLP 289 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125 D + + L P +++D + L +P + Sbjct: 290 DAEGL------PDAARRLL--TTPAAPIVLVDKQHVASLCEGIAPGLAEVGVMLPANPLQ 341 Query: 126 K-LIETYGHPLAIPSANRSGQISITNVKHILSS 157 L++ PL + S N SG+ + L Sbjct: 342 HLLLQALNCPLVMTSGNLSGKPPAITNQQALDD 374 >gi|257054854|ref|YP_003132686.1| (NiFe) hydrogenase maturation protein HypF [Saccharomonospora viridis DSM 43017] gi|256584726|gb|ACU95859.1| (NiFe) hydrogenase maturation protein HypF [Saccharomonospora viridis DSM 43017] Length = 762 Score = 79.3 bits (195), Expect = 7e-13, Method: Composition-based stats. Identities = 42/199 (21%), Positives = 71/199 (35%), Gaps = 21/199 (10%) Query: 14 KACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 +A E L AG+ +A V GL D+ NP A+ L K+R A P V+ + Sbjct: 213 RAVELLRAGMVVA-----VKGLGGYHVAVDATNPHAVETLRARKRR-ADKPFAVMVATVD 266 Query: 69 MVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 ++ VD + L P +VL ++ + +P L Sbjct: 267 EARRLCVVDEAAERALTDRRRP----IVLLDRRGKELAEAVAPGNRQLGVFLPYTPLHHL 322 Query: 128 IE-TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII--DGGISKIGLESTIVNVQ 184 + +G P+ + S N S + LS + + D I +S +V Sbjct: 323 LSVEFGAPMVLTSGNASDEPIAFTDADALS-RLSGIADAFLVHDRPIHAWADDS-VVRPW 380 Query: 185 CEKKVRILRPGGLEIETLK 203 + V + R G E ++ Sbjct: 381 RDTVVPVRRSRGYTPEPIR 399 >gi|146312826|ref|YP_001177900.1| (NiFe) hydrogenase maturation protein HypF [Enterobacter sp. 638] gi|145319702|gb|ABP61849.1| (NiFe) hydrogenase maturation protein HypF [Enterobacter sp. 638] Length = 751 Score = 79.3 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 42/152 (27%), Positives = 63/152 (41%), Gaps = 14/152 (9%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYG--LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 NAL+ A + L AG +AI +++ G L D+RN AI RL E K RPA PL V+D Sbjct: 197 ENALQVAVKLLKAGGVVAI--KSLGGFHLVCDARNIQAISRLRERKHRPA-KPLAVMVAD 253 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126 ++ + P + P+ L D+ L T +P + Sbjct: 254 VARL-------PAPIQKLLRSPAAPIVLTSKTF-LPDLPHEIAPGLDTIGVMLPSNPLQH 305 Query: 127 LI-ETYGHPLAIPSANRSGQISITNVKHILSS 157 L+ + PL + S N SG+ + L Sbjct: 306 LLMDDMACPLVMTSGNLSGKPPAMTNQQALDD 337 >gi|119509241|ref|ZP_01628391.1| hydrogenase maturation protein [Nodularia spumigena CCY9414] gi|119466083|gb|EAW46970.1| hydrogenase maturation protein [Nodularia spumigena CCY9414] Length = 780 Score = 79.3 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 59/164 (35%), Gaps = 15/164 (9%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 + + C L G +AI GL D+ A+++L + K+R PL Sbjct: 203 DDVDAVCTLLQKGEIVAIK-----GLGGIHLACDATQEAAVQKLRQRKRR-YHKPLALMA 256 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123 DI+++ ++ +V+ L P+ ++L I P + L F +P Sbjct: 257 RDIAVIAEYCTVNTQEKELLASSA-API-VLLQKNPHCLIAPSVSPGLNYLGFMLPYTPL 314 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 ++ P+ + S N + + + + + + Sbjct: 315 HHLILRRMNRPIVLTSGNIADEPQCIDNEEA-REKLGHIADYFL 357 >gi|296104387|ref|YP_003614533.1| hydrogenase maturation protein HypF [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058846|gb|ADF63584.1| hydrogenase maturation protein HypF [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 626 Score = 79.3 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 54/158 (34%), Gaps = 20/158 (12%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPL 60 +T AL A + L G +AI GL D+ NP A+ L K+RP PL Sbjct: 82 VTRELALNAAVQMLKNGGIVAIK-----GLGGFHLACDALNPQAVATLRARKQRP-GKPL 135 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 + + + P+ L P +++ L + +P Sbjct: 136 AVMIPSADGLPQ-----PVQTRLRS---PAAPIVLIPKAWLPTFPDDIAPGLDSLGVMLP 187 Query: 121 CGFTKKLI-ETYGHPLAIPSANRSGQISITNVKHILSS 157 + L+ + PL + S N SG+ + L Sbjct: 188 ANPLQHLLMQETQRPLVMTSGNLSGRPPAISNPQALEQ 225 >gi|118474454|ref|YP_892105.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter fetus subsp. fetus 82-40] gi|118413680|gb|ABK82100.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter fetus subsp. fetus 82-40] Length = 741 Score = 79.3 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 46/174 (26%), Positives = 63/174 (36%), Gaps = 23/174 (13%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAM 57 I+ D A+R L +G IAI G+ D+ N AI L E K RP Sbjct: 192 IVLANDEEAIRLCANELKSGKIIAIK-----GIGGFHLVCDATNQKAISSLRERKNRP-D 245 Query: 58 NPLICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 P DI M A ++ L P ++ L S + NLK Sbjct: 246 KPFAIMCKDIQMASLVAYINEFEEDALTSNIKP-----IILLKSKEILPANLALNLKKIG 300 Query: 117 FRV-PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169 + P L E P+ SAN SG+ I + SI K++ + DG Sbjct: 301 IFLPPTSLHLLLFEYIDFPIIATSANISGEPIIIDF-----ESISKKLIKVCDG 349 >gi|145298789|ref|YP_001141630.1| hydrogenase maturation protein HypF [Aeromonas salmonicida subsp. salmonicida A449] gi|142851561|gb|ABO89882.1| hydrogenase maturation protein HypF [Aeromonas salmonicida subsp. salmonicida A449] Length = 808 Score = 79.3 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 60/176 (34%), Gaps = 24/176 (13%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 AL+ A L G IA V G+ D+RN ++ RL +K+R PL Sbjct: 220 EEALQMAARALQTGALIA-----VKGMGGYHLICDARNERSVARLRTLKRRAR-KPLAVM 273 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLL----------STTDIHPLSTANLK 113 + ++ K H + L P+TL+ S + + Sbjct: 274 MGSLAEAKLHVTGSADEWKLLASQA-RPITLLRKRKNDDRLSGSRPSAAPLAEGIAPGIP 332 Query: 114 TACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 +P + L++ PL SAN G + ++ + I I+D Sbjct: 333 YLGVMLPYTPLHQLLLDACAIPLVATSANGRGSPILIEFDAVVRE-LGGNIDGILD 387 >gi|299471467|emb|CBN79418.1| translation factor [Ectocarpus siliculosus] Length = 184 Score = 79.3 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 43/120 (35%), Gaps = 19/120 (15%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVS 65 +DS L +A L G IPT+T Y A D + + R+ +IK + PL Sbjct: 47 SDSWRLIEAGNILRKGGVGVIPTDTCYTFACDILSRKGVERILQIKNEQGRHKPLSLLCK 106 Query: 66 DISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 DIS + +A +D + L + H T K R+P Sbjct: 107 DISTMNTYAKGIDKVPRMLIEH-----------------KHHKKTWKRKEIGIRLPNAPV 149 >gi|213865416|ref|ZP_03387535.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 58 Score = 78.9 bits (194), Expect = 8e-13, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 32/58 (55%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 A+ A + L+ IA PTE V+G+ D + TA+ RL E+K+RP LI ++ Sbjct: 1 AIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYE 58 >gi|163782645|ref|ZP_02177642.1| transcriptional regulatory protein HypF [Hydrogenivirga sp. 128-5-R1-1] gi|159882218|gb|EDP75725.1| transcriptional regulatory protein HypF [Hydrogenivirga sp. 128-5-R1-1] Length = 745 Score = 78.9 bits (194), Expect = 8e-13, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 81/227 (35%), Gaps = 27/227 (11%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 A+R + + G +A+ G+ D+ N ++R L E K+R P Sbjct: 201 EEAIRVLLDGIREGKIVALK-----GIGGFHLVCDATNEESVRLLRERKRR-QEKPFAVM 254 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CG 122 D+S V+++AS L K P ++ + ++ P LK +P Sbjct: 255 FRDLSQVEEYAS----PTELEKALLLSPERPIVLIEKKRELAPSVAPGLKRVGAFLPYSP 310 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII--DGGISKIGLESTI 180 ++ P+ S N S + + + + L + LI+ + I + +S + Sbjct: 311 LHHIILRELEFPVVATSGNLSDEPIVKDNEEAL-ERLSAFADLILLHNREIKRRCDDS-V 368 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLK 227 V V I R G ++ + + + GMLK Sbjct: 369 VKVIGGVPTPIRRSRGYAPMPIELPVKLPKKVLAVG-------GMLK 408 >gi|226225825|ref|YP_002759931.1| hydrogenase maturation protein HypF [Gemmatimonas aurantiaca T-27] gi|226089016|dbj|BAH37461.1| hydrogenase maturation protein HypF [Gemmatimonas aurantiaca T-27] Length = 859 Score = 78.9 bits (194), Expect = 9e-13, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 56/156 (35%), Gaps = 16/156 (10%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 + NALR A L AG +A G+ D+RN A+ RL K RP PL Sbjct: 240 NENALRAALTVLRAGGIVAAK-----GIGGYHLLCDARNADAVARLRLRKDRP-HKPLAV 293 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWP-GPLTLVLDLL-STTDIHPLSTANLKTACFRVP 120 V +S ++ A V ++ + P P+ LV + + L + +P Sbjct: 294 LVDTLSTLRTFADVRASAVVSLES--PAHPIVLVPTSKGAAQPLAHNVAPGLDSVGVMLP 351 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILS 156 L+ PL S N S + L Sbjct: 352 AFPLHALL-AADGPLVCTSGNLSDEPIAWRDVDALR 386 >gi|221103657|ref|XP_002161835.1| PREDICTED: similar to predicted protein, partial [Hydra magnipapillata] Length = 139 Score = 78.9 bits (194), Expect = 9e-13, Method: Composition-based stats. Identities = 34/130 (26%), Positives = 63/130 (48%), Gaps = 9/130 (6%) Query: 79 LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAI 137 +S ++ + PGP+TLV ++ ++ + R+P C F + L + P+A+ Sbjct: 2 ISDNVLEDLLPGPVTLVFQR--SSLLNSYLNPTSNSIGVRIPKCAFIQTLAQKCQQPIAL 59 Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGI----SKIGLESTIVNVQCEKKVRILR 193 SAN S +S ++K + ++ LI+DGG + L ST+V++ E + I+R Sbjct: 60 TSANISSAMSSLDIKE--FEELWPKLDLIVDGGTLGSSEQSRLGSTVVDLTKEGEFTIIR 117 Query: 194 PGGLEIETLK 203 G E + Sbjct: 118 EGCAYNEVVN 127 >gi|114776859|ref|ZP_01451902.1| Putative translation factor [Mariprofundus ferrooxydans PV-1] gi|114552945|gb|EAU55376.1| Putative translation factor [Mariprofundus ferrooxydans PV-1] Length = 170 Score = 78.9 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 41/178 (23%), Positives = 62/178 (34%), Gaps = 15/178 (8%) Query: 21 AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPL 79 AG IA T T+ G+A + N + RL K+R P + + + A P Sbjct: 3 AGGVIAHHTGTLPGIAAATLNQQSTDRLIRFKQRRG--PFLLLADQKATAARIARYFSPE 60 Query: 80 SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIP 138 WPGP+TLV RV ++L G LA Sbjct: 61 LRRQMHAAWPGPVTLVFPGRPGLPACCY---RKGLVAVRVDSSLQARQLAHACGGLLASS 117 Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDG---GISKIGLESTIVNVQCEKKVRILR 193 S NR G + + ++ +DG G+ G S+I+ ++ I R Sbjct: 118 SLNRRGGAHLRPDR-----NLQMRFHHYLDGRIIGLPPAGKASSIIRIRRNHSTVIRR 170 >gi|224372623|ref|YP_002606995.1| [NiFe] hydrogenase maturation protein HypF [Nautilia profundicola AmH] gi|223589878|gb|ACM93614.1| [NiFe] hydrogenase maturation protein HypF [Nautilia profundicola AmH] Length = 759 Score = 78.9 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 34/193 (17%), Positives = 65/193 (33%), Gaps = 25/193 (12%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 + E + G +AI GL ++ N A++ L K+RP P D Sbjct: 208 IELIAEKIKEGKIVAIK-----GLGGFHLVCNATNEEAVKELRRRKQRP-TKPFAMMFKD 261 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126 + +K++ + L P+ LV + I + +P Sbjct: 262 LDTIKEYCDLSAKDTELITSK-EKPIVLVKKRVDLPQIAD----GIDRYGVFLPYTPVHY 316 Query: 127 LI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 L+ E P+ SAN S + I + ++ + + I+D I+N Sbjct: 317 LLFEYIDFPIVATSANISDEPIIRDSNELV-EKLGNVVDYILDNDRD-------IINACD 368 Query: 186 EKKVRILRPGGLE 198 + V+ + + Sbjct: 369 DSVVQAVEFEYIT 381 >gi|313678622|ref|YP_004056362.1| hypothetical protein MBOVPG45_0534 [Mycoplasma bovis PG45] gi|312950474|gb|ADR25069.1| conserved hypothetical protein [Mycoplasma bovis PG45] Length = 151 Score = 78.6 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 21/122 (17%) Query: 29 TETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFW 88 T+TV G+ N ++ +Y +K RP +I V I + + + A +W Sbjct: 11 TDTVTGIGG-PVNENTLKCIYYLKNRPISKKIIILVGSIEQARAFKEWNNEADDFAAKYW 69 Query: 89 PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG--FTKKLIETYGHPLAIPSANRSGQI 146 PG +++++ FR+P + L++ P+ + SAN SGQ Sbjct: 70 PGAYSIIVNGQ----------------GFRMPNNSQLCQFLLK--NGPMYVTSANISGQD 111 Query: 147 SI 148 I Sbjct: 112 PI 113 >gi|312111044|ref|YP_003989360.1| (NiFe) hydrogenase maturation protein HypF [Geobacillus sp. Y4.1MC1] gi|311216145|gb|ADP74749.1| (NiFe) hydrogenase maturation protein HypF [Geobacillus sp. Y4.1MC1] Length = 753 Score = 78.6 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 44/196 (22%), Positives = 68/196 (34%), Gaps = 18/196 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 D A+ K E L G +AI GL D+ N A+R L + K+R A P Sbjct: 199 DEKAIEKTAELLRTGRIVAIK-----GLGGYHLACDAENEEAVRELRKRKRRSA-KPFAL 252 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 V DI KK + L P+ L S + P ++ +P Sbjct: 253 MVKDIETAKKLIDISAEEEKLLTSSA-RPIVLARARRSLPGVAPDNSD----LGIMLPYT 307 Query: 123 FTKKLIETYGHP--LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L+ +G P L + SANRS + I + ++ ++ ++ Sbjct: 308 PLHHLLFHFGAPHVLVMTSANRSSEPIIYEDDKAAKALEGIADAWLVGERPIARRVDDSV 367 Query: 181 VNVQCEKKVRILRPGG 196 V V + R G Sbjct: 368 VRVTPFGPAVLRRARG 383 >gi|197119503|ref|YP_002139930.1| hydrogenase maturation protein HypF [Geobacter bemidjiensis Bem] gi|197088863|gb|ACH40134.1| hydrogenase maturation protein HypF [Geobacter bemidjiensis Bem] Length = 758 Score = 78.6 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 42/164 (25%), Positives = 67/164 (40%), Gaps = 15/164 (9%) Query: 10 NALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 +AL+ A E L G +A V Y LAVD+ N A+ RL + K+R P Sbjct: 202 DALKLALEALSQGKIVA-----VKGVGGYHLAVDAGNQAAVERLRQRKRRDE-KPFAMLA 255 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 +D+ MV++HA L L P+ +++ L+ + I L F +P Sbjct: 256 ADLEMVRRHAHCSELEGRLLLGV-ERPI-VLMRKLAGSSISDLVAPGNGWFGFMLPGNPL 313 Query: 125 KKLI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 + L+ +G PL + S N S + L + L + Sbjct: 314 QHLLARGHGAPLVMTSGNLSDEPIAYRDGEAL-EMLSGIADLFL 356 >gi|295400430|ref|ZP_06810409.1| (NiFe) hydrogenase maturation protein HypF [Geobacillus thermoglucosidasius C56-YS93] gi|294977705|gb|EFG53304.1| (NiFe) hydrogenase maturation protein HypF [Geobacillus thermoglucosidasius C56-YS93] Length = 753 Score = 78.6 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 44/196 (22%), Positives = 68/196 (34%), Gaps = 18/196 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 D A+ K E L G +AI GL D+ N A+R L + K+R A P Sbjct: 199 DEKAIEKTAELLRTGRIVAIK-----GLGGYHLACDAENEEAVRELRKRKRRSA-KPFAL 252 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 V DI KK + L P+ L S + P ++ +P Sbjct: 253 MVKDIETAKKLIDISAEEEKLLTSSA-RPIVLARARRSLPGVAPDNSD----LGIMLPYT 307 Query: 123 FTKKLIETYGHP--LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L+ +G P L + SANRS + I + ++ ++ ++ Sbjct: 308 PLHHLLFHFGAPHVLVMTSANRSSEPIIYEDDKAAKALEGIADVWLVGERPIARRVDDSV 367 Query: 181 VNVQCEKKVRILRPGG 196 V V + R G Sbjct: 368 VRVTPFGPAVLRRARG 383 >gi|317054482|ref|YP_004118507.1| (NiFe) hydrogenase maturation protein HypF [Pantoea sp. At-9b] gi|316952477|gb|ADU71951.1| (NiFe) hydrogenase maturation protein HypF [Pantoea sp. At-9b] Length = 757 Score = 78.6 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 63/166 (37%), Gaps = 21/166 (12%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNP 59 S+T AL++A L G +A V GL D+RNP A+ RL + K+RP+ P Sbjct: 203 SVTGEAALQQAVAVLKNGGIVA-----VKGLGGFHLAVDARNPAAVERLRQRKRRPS-KP 256 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 ++D + ++ L P +++D L + L + Sbjct: 257 FAVMLADSHGL------PAGTIRLLSS--PAAPIVLVDRLLVRGLSDNIAPGLNEIGVML 308 Query: 120 PCGFTKKL-IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP 164 P + L IE + PL + S N+SG + + Sbjct: 309 PANPLQHLLIEDFAGPLVMTSGNQSGLPPALSNDQA-RDQLAGIAD 353 >gi|268679729|ref|YP_003304160.1| (NiFe) hydrogenase maturation protein HypF [Sulfurospirillum deleyianum DSM 6946] gi|268617760|gb|ACZ12125.1| (NiFe) hydrogenase maturation protein HypF [Sulfurospirillum deleyianum DSM 6946] Length = 744 Score = 78.6 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 38/171 (22%), Positives = 59/171 (34%), Gaps = 14/171 (8%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMN 58 + T+ AL + AG +A+ G+ D+ N + RL E KKR A Sbjct: 198 IVATNEAALHHLAALIRAGNIVAMK-----GMGGFHLVCDASNEKVVHRLRERKKR-ASK 251 Query: 59 PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 P I ++ V P+ LV T I P L Sbjct: 252 PFAVMFKTIEAIEAVCEVGIKEKEAITSLL-RPIVLVKHQTKNTLIAPSVAPRLDRLGVF 310 Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 +P L E +P+ SAN SG+ + + K ++ + I +D Sbjct: 311 LPYTPLHVMLFEYLKNPMVATSANLSGEPILYDAKQVV-EKLSHVIDYYLD 360 >gi|78777628|ref|YP_393943.1| hydrogenase maturation protein HypF [Sulfurimonas denitrificans DSM 1251] gi|78498168|gb|ABB44708.1| Hydrogenase maturation protein HypF [Sulfurimonas denitrificans DSM 1251] Length = 742 Score = 78.6 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 60/182 (32%), Gaps = 22/182 (12%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPA 56 Q + I N + K + G +AI G+ D+ + A++ L E K RP Sbjct: 194 QKVEIDKKNIIEKVASLIKNGKILAIK-----GIGGFHIVCDANSDEALKNLREFKHRP- 247 Query: 57 MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 P D+ +K A V L P+ ++L + I L N+ Sbjct: 248 TKPFAIMCKDLQQIKALAEVSEKEEQLL-TCKEAPI-VILKKRTCNHISSLLAPNIDRIG 305 Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSS--------SICKEIPLII 167 +P L +P+ SAN + I + I +EI + Sbjct: 306 CFLPYTALHHLLFAHLQNPIVATSANLGDEPIIIKAEDIFKKLPFVEFTLDFEREIINGV 365 Query: 168 DG 169 D Sbjct: 366 DD 367 >gi|159029144|emb|CAO87504.1| hypF [Microcystis aeruginosa PCC 7806] Length = 754 Score = 78.6 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 40/201 (19%), Positives = 72/201 (35%), Gaps = 18/201 (8%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAM 57 +++ D + A + G IAI GL D+RN A+++L + K+RP Sbjct: 202 VLAEKDQALIATA-RAIQQGKIIAIK-----GLGGFHLVVDARNTEAVQKLRQRKQRP-D 254 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 P ++ +VKKH V L L + +VL + P + Sbjct: 255 KPFAVMYPNLELVKKHGYVSSLESKLLQS---SAAAIVLIKQRKNYLSPSVSPGNPYLGV 311 Query: 118 RVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG- 175 +P L+ G P+ S N + + K L + L + + Sbjct: 312 MLPYTPLHHLLLAELGFPIVATSGNLADEPICIEEKEAL-EKLGTIADLFLVHNRPIVRP 370 Query: 176 LESTIVNVQCEKKVRILRPGG 196 ++ +I+ K + + R G Sbjct: 371 VDDSIIREMAGKAMILRRARG 391 >gi|262275761|ref|ZP_06053570.1| [NiFe] hydrogenase metallocenter assembly protein HypF [Grimontia hollisae CIP 101886] gi|262219569|gb|EEY70885.1| [NiFe] hydrogenase metallocenter assembly protein HypF [Grimontia hollisae CIP 101886] Length = 794 Score = 78.2 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 35/161 (21%), Positives = 56/161 (34%), Gaps = 19/161 (11%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 +A++ A ++ G +A V GL D+ N + L K+RP P + Sbjct: 206 DAIQAAVHYIRQGKILA-----VKGLGGFHLVCDATNQDVVDTLRRRKQRP-DKPFAVMM 259 Query: 65 SDISMVKKHASVDPLSLHLAK------LFWP-GPLTLVLDLLSTTDIHPLSTANLKTACF 117 D V + P +L + + + P +T L+ I NL Sbjct: 260 KDAEQVGLYCQPSPAALEMLQSVSSPVVIMPTRNVTASLNTEGCGVIATAVAPNLGELGI 319 Query: 118 RVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSS 157 +P L PL + SAN SG T+ + L Sbjct: 320 MLPATPMHLLLCHDVALPLVMTSANLSGNPQCTDNREALED 360 >gi|270263104|ref|ZP_06191374.1| hypothetical protein SOD_d01200 [Serratia odorifera 4Rx13] gi|270042792|gb|EFA15886.1| hypothetical protein SOD_d01200 [Serratia odorifera 4Rx13] Length = 772 Score = 78.2 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 58/153 (37%), Gaps = 12/153 (7%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 AL++A L AG +AI G+ D+ + A+ RL K+RP PL + Sbjct: 205 ALQQAAALLCAGEIVAIK-----GIGGFHLACDATDQHAVMRLRNRKRRP-GKPLAVMLP 258 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125 D+S + + L+ L P +++ + + +L +P Sbjct: 259 DVSWLARCTGNHSLAQLSETLLSPAAPIVLVPQRPHSALCDAVAPHLDEVGVMLPSNPLH 318 Query: 126 KLI-ETYGHPLAIPSANRSGQISITNVKHILSS 157 L+ + PL + S N +G+ + L Sbjct: 319 HLLMQAVRRPLVMTSGNATGRAPALTNEQALQD 351 >gi|283786741|ref|YP_003366606.1| hydrogenase maturation protein [Citrobacter rodentium ICC168] gi|282950195|emb|CBG89831.1| hydrogenase maturation protein [Citrobacter rodentium ICC168] Length = 747 Score = 77.8 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 35/155 (22%), Positives = 55/155 (35%), Gaps = 20/155 (12%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 AL A E L AG +A V G+ D+RNP A+ L K+RPA PL Sbjct: 200 EAALTAAAEVLKAGGIVA-----VKGIGGFHLACDARNPDAVATLRARKRRPA-KPLAVM 253 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 + D + + L P +++D + L +P Sbjct: 254 LPDDGGL------PTAARELLNA--PAAPIVLIDKRYVASLCAEIAPGLSEVGVMLPANP 305 Query: 124 TKKLI-ETYGHPLAIPSANRSGQISITNVKHILSS 157 + L+ + PL + S N SG+ + + Sbjct: 306 LQHLLMQALNCPLVMTSGNLSGRPPAMSNAQAMED 340 >gi|18977588|ref|NP_578945.1| hypothetical protein PF1216 [Pyrococcus furiosus DSM 3638] gi|18893305|gb|AAL81340.1| hypothetical protein PF1216 [Pyrococcus furiosus DSM 3638] Length = 49 Score = 77.8 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 20/46 (43%), Positives = 31/46 (67%) Query: 26 AIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 A PTET+YGL D+ N A++R++E K RP N LI +++ S ++ Sbjct: 2 AFPTETIYGLGDDALNGEAVKRIFEAKGRPTDNLLIVYMAKFSQLR 47 >gi|149174236|ref|ZP_01852863.1| hydrogenase maturation protein [Planctomyces maris DSM 8797] gi|148846781|gb|EDL61117.1| hydrogenase maturation protein [Planctomyces maris DSM 8797] Length = 765 Score = 77.8 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 58/152 (38%), Gaps = 14/152 (9%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLI 61 +D+ A++ A L G + + GL D+ + A++ L E K+R PL Sbjct: 210 SDTEAIQSAARALQQGAIVGLK-----GLGGYQLLVDATSEAAVQMLREKKQR-LGKPLA 263 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 V+D+ +K A ++ P ++L + I L T +P Sbjct: 264 VMVTDLIAARKLAMMNDAEAETLAS--PAAPIVLLQAHENSPIAGNVNPGLNTVGVMLPT 321 Query: 122 GFTKK-LIETYGHPLAIPSANRSGQISITNVK 152 L++ PL + SANR G+ + Sbjct: 322 TPLHWLLLQQCDFPLVVTSANREGEPLFYQDR 353 >gi|289677573|ref|ZP_06498463.1| SUA5/yciO/yrdC, N-terminal [Pseudomonas syringae pv. syringae FF5] Length = 55 Score = 77.8 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 30/55 (54%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 + S +++A + + AG IA PTE V+GL D + A+ RL IK RP L Sbjct: 1 MVSSWRVQQAAQDIRAGAVIAYPTEAVWGLGCDPWDEEAVYRLLAIKSRPVEKGL 55 >gi|270308596|ref|YP_003330654.1| hydrogenase maturation protein HypF [Dehalococcoides sp. VS] gi|270154488|gb|ACZ62326.1| hydrogenase maturation protein HypF [Dehalococcoides sp. VS] Length = 763 Score = 77.8 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 57/165 (34%), Gaps = 15/165 (9%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 ++ + +A + L G +AI GL D+ NP A+ L K RP+ P Sbjct: 205 ADTIAEAAKLLKDGRILAIR-----GLGGFLLAADATNPPAVNTLRRRKHRPS-KPFAVM 258 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CG 122 + DI+ +KH + L P ++ + + P + + Sbjct: 259 LPDIAEARKHCFISAEEEKLL--ISPAAPIVLCKWNGESPVCPETAPKQNYLGIMLAYTP 316 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 L++ G PL + S N S + + L + + Sbjct: 317 IHHLLLKETGKPLIMTSGNLSEEPIAKDNDEALK-RLGNIADYFL 360 >gi|237752501|ref|ZP_04582981.1| hydrogenase maturation protein HypF [Helicobacter winghamensis ATCC BAA-430] gi|229375990|gb|EEO26081.1| hydrogenase maturation protein HypF [Helicobacter winghamensis ATCC BAA-430] Length = 778 Score = 77.8 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 40/172 (23%), Positives = 62/172 (36%), Gaps = 14/172 (8%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPA 56 + + N L KA EFL G +A V Y L + N AI L K RP Sbjct: 213 KFIKEFTQNPLDKAVEFLKQGKILA-----VKGIGGYALVCNGLNTEAIMVLRMRKNRPR 267 Query: 57 MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 P D+ M + + + + P+ L + H + NL+T Sbjct: 268 -KPFALMCKDLKMAESYVHLSAFQKEILDSNI-APILLCDFKDKSPLPHSVIAPNLETLG 325 Query: 117 FRVPCGFTKKLI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 +P L+ E PL SAN SG+ I + I+ ++ ++ Sbjct: 326 VILPYAPLHYLLFEAIDFPLIFTSANLSGEPIIKDFSGIV-ENLGDVCDGVL 376 >gi|289806392|ref|ZP_06537021.1| putative ribosome maturation factor [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 121 Score = 77.4 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 43/123 (34%), Gaps = 8/123 (6%) Query: 72 KHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127 + L+ K WPGP+T V +TT T + RV L Sbjct: 1 PYIDDSILTAAQRKAVFDCWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTNHPLVVAL 58 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 YG PL SAN SG V+ + + + P +++G S I + + Sbjct: 59 CNAYGKPLVSTSANLSGLPPCRTVEEV-RAQFGDDFP-VVEGATGGRLNPSEIRDALTGE 116 Query: 188 KVR 190 R Sbjct: 117 LFR 119 >gi|71894113|ref|YP_278221.1| hypothetical protein MS53_0089 [Mycoplasma synoviae 53] gi|71850901|gb|AAZ43510.1| conserved hypothetical protein [Mycoplasma synoviae 53] Length = 157 Score = 77.4 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 60/159 (37%), Gaps = 20/159 (12%) Query: 29 TETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFW 88 T+TV GL V N ++ +LY +K RP ++ + + K +A Sbjct: 13 TDTVCGLGVKLENKDSLHKLYALKNRPVDKKIMILAGSFNDIFKLTKFTKKQRVMAYKLL 72 Query: 89 PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISI 148 PG +++++ R+P + P+ + SAN SG+ Sbjct: 73 PGSNSIIVNN----------------IGMRIPNCLKLRKFLIKNGPMYVTSANISGE-KP 115 Query: 149 TNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +++ ++I I+D S G S I N+ + Sbjct: 116 LSIEEA--QVKFEKIRYIVDY-CSPSGSPSKIYNLDTGE 151 >gi|238790260|ref|ZP_04634034.1| Carbamoyltransferase hypF [Yersinia frederiksenii ATCC 33641] gi|238721610|gb|EEQ13276.1| Carbamoyltransferase hypF [Yersinia frederiksenii ATCC 33641] Length = 760 Score = 77.4 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 40/156 (25%), Positives = 63/156 (40%), Gaps = 12/156 (7%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYG-----LAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 D A+++A L AG +A V G LAVD+ N TA+ RL K RP+ PL Sbjct: 200 DFAAVQQAAMALLAGEIVA-----VKGVGGFHLAVDATNSTAVARLRARKHRPS-KPLAV 253 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 + D S +K L L P +++ + + L +P Sbjct: 254 MLPDASWLKTCVQSTDNDALLRLLRSPAAPIVLVAKQPNSPLSAAVAPKLPEIGVMLPAN 313 Query: 123 FTKK-LIETYGHPLAIPSANRSGQISITNVKHILSS 157 + L++ PL + S N SG+ + + LS+ Sbjct: 314 PLQHLLLQQVARPLVMTSGNGSGKPPALSNEQALSA 349 >gi|312897390|ref|ZP_07756814.1| [NiFe] hydrogenase maturation protein HypF [Megasphaera micronuciformis F0359] gi|310621451|gb|EFQ04987.1| [NiFe] hydrogenase maturation protein HypF [Megasphaera micronuciformis F0359] Length = 770 Score = 77.4 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 41/198 (20%), Positives = 73/198 (36%), Gaps = 21/198 (10%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 A+R A E + G IA V G+ D N + RL +K RP P + Sbjct: 198 AIRAAREAIRQGKIIA-----VKGIGGFHLCCDGTNEAVVSRLRRLKPRPV-KPFAVMAA 251 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125 D+ K+ V + L + P+ L+ + ++ N +P + Sbjct: 252 DLETAKRECVVTRAAEELLTS-YERPIVLMKRRIGGKAAASVAPDN-PYMGVMLPYAPLQ 309 Query: 126 KLI----ETYGHP--LAIPSANRSGQISITNVKHILSSSICKEIPLII-DGGISKIGLES 178 L+ + P L + SANRSG + + + + LI+ + ++ Sbjct: 310 LLLFSYNDGLHMPDLLVMTSANRSGMPICRTDEEV-RTDLPGLCDLILSHDRDILLRVDD 368 Query: 179 TIVNVQCEKKVRILRPGG 196 ++V V ++ I R G Sbjct: 369 SVVTVSADEPYMIRRSRG 386 >gi|238921140|ref|YP_002934655.1| [NiFe] hydrogenase maturation protein HypF, [Edwardsiella ictaluri 93-146] gi|238870709|gb|ACR70420.1| [NiFe] hydrogenase maturation protein HypF, putative [Edwardsiella ictaluri 93-146] Length = 774 Score = 77.0 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 37/151 (24%), Positives = 59/151 (39%), Gaps = 15/151 (9%) Query: 14 KAC-EFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 +A LDAG +A V GL D+ N AI RL E K+RP PL + D+ Sbjct: 204 QAVTRSLDAGHIVA-----VKGLGGFHLACDAENDAAIARLRERKRRP-GKPLALMLPDL 257 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126 S + ++ P + + P ++ + ++ + L +P Sbjct: 258 SWLARYCRAAPDAG--LQALLSSPAAPIVLVPASDAVPAQVAPGLDEVGVMLPGTPLHHL 315 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSS 157 L+ G PL + S N SGQ + L+ Sbjct: 316 LMAHIGRPLVMTSGNASGQPPALDNAQALAD 346 >gi|271965276|ref|YP_003339472.1| (NiFe) hydrogenase maturation protein HypF [Streptosporangium roseum DSM 43021] gi|270508451|gb|ACZ86729.1| (NiFe) hydrogenase maturation protein HypF [Streptosporangium roseum DSM 43021] Length = 775 Score = 77.0 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 32/200 (16%), Positives = 66/200 (33%), Gaps = 14/200 (7%) Query: 10 NALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 + + A E + +G +A V Y LA D+ + A+R L K R P V Sbjct: 220 DPIGLAAEVVRSGGVLA-----VKGLGGYHLAADATDEAAVRALRSRKHR-EDRPFAVMV 273 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 +D+ + +D ++ L P ++L + + +P Sbjct: 274 ADLDAARTLCELDQVAERLLTG--PRRPIVLLPRRPGAPLAEAVAPGDRRLGVMLPYTPM 331 Query: 125 KKLIE-TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 L+ P + S N S + + + + + + ++V Sbjct: 332 HHLLAGEIARPYVLTSGNLSDEPIAYRDRDAFTRLAGIADRFLTHDRPIHVRTDDSVVLA 391 Query: 184 QCEKKVRILRPGGLEIETLK 203 +++ + R G E L+ Sbjct: 392 AGGRELPLRRSRGYAPEPLR 411 >gi|291547016|emb|CBL20124.1| [NiFe] hydrogenase maturation protein HypF [Ruminococcus sp. SR1/5] Length = 806 Score = 76.6 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 68/200 (34%), Gaps = 22/200 (11%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 A+ + + +G +AI G+ D+ + A++RL + K+RP P Sbjct: 216 EAITYTRKIIASGGIVAIK-----GIGGFHLCCDATSEEAVQRLRQRKRRPV-KPFAVMA 269 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 D+ VKK V + P+ L+ L T + +P Sbjct: 270 QDMEAVKKICKVSEEQEKILTGH-QKPILLLDKLPGETGLCESIAPGNPKVGVMLPYAPV 328 Query: 125 KKL-------IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII-DGGISKIGL 176 + L I G L + S N SG + + + + I+ +I Sbjct: 329 QLLLFHYDDGIRMPGL-LVMTSGNTSGAPICRDDEEAV-EELSHLCDCILSHNRKIRIRA 386 Query: 177 ESTIVNVQCEKKVRILRPGG 196 + ++++ + I R G Sbjct: 387 DDSVMDFYKGEPYMIRRSRG 406 >gi|152979285|ref|YP_001344914.1| (NiFe) hydrogenase maturation protein HypF [Actinobacillus succinogenes 130Z] gi|150841008|gb|ABR74979.1| (NiFe) hydrogenase maturation protein HypF [Actinobacillus succinogenes 130Z] Length = 766 Score = 76.6 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 66/173 (38%), Gaps = 18/173 (10%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYG-----LAVDSRNPTAIRRLYEIKKRPA 56 + + + AL++ + L G +A V G LA D+ N +A++ L E K RP Sbjct: 206 ETILAERNTALQQTADALKQGKIVA-----VKGVGGFHLACDATNQSAVKLLRERKHRP- 259 Query: 57 MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 PL V ++ ++ L P ++L ++ PL L Sbjct: 260 GKPLAIMVPGLANLRDL--NTEEIRLLTSAAAP---IVLLKNRKVPEVCPLIAPKLNEIG 314 Query: 117 FRVPCGFTKK-LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 +P + L+ PL + SAN SG+ + + + + + + + Sbjct: 315 VMLPGNPLQHLLLREVNRPLVMTSANPSGEPPVLDNQSAVK-FLKDLADVFLC 366 >gi|217966526|ref|YP_002352032.1| (NiFe) hydrogenase maturation protein HypF [Dictyoglomus turgidum DSM 6724] gi|217335625|gb|ACK41418.1| (NiFe) hydrogenase maturation protein HypF [Dictyoglomus turgidum DSM 6724] Length = 741 Score = 76.6 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 66/167 (39%), Gaps = 17/167 (10%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYG-----LAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 D + K ++L+ G +AI G LA D+ ++RL E KKRP+ P Sbjct: 192 DKDIFEKIAKYLEEGKILAIK-----GMGGFHLACDATKEDIVKRLRERKKRPS-KPFAL 245 Query: 63 HVSDISMVKKHASVDPLSLHLAK-LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 + DI M+K++ V + K P ++L DI PL K +P Sbjct: 246 MMKDIEMIKEYCFVSKEEEKILKSKEAP---IVLLRTRELKDISPLVAPGNKYLGVMLPY 302 Query: 122 GFTKKLI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 LI + + P+ + S N S + + + + + + + Sbjct: 303 TPYHHLIFDYFKKPIIMTSGNLSDEPIAKDNEEAM-ERLKNIADVFV 348 >gi|295109109|emb|CBL23062.1| [NiFe] hydrogenase maturation protein HypF [Ruminococcus obeum A2-162] Length = 782 Score = 76.3 bits (187), Expect = 5e-12, Method: Composition-based stats. Identities = 42/199 (21%), Positives = 75/199 (37%), Gaps = 20/199 (10%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 +A+ A + + G +AI G+ D+ N TA+ RL ++K+RP M P Sbjct: 212 DAITFARKTIADGGIVAIK-----GIGGFHLCCDASNETAVIRLRQLKRRP-MKPFAVMA 265 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 D+ +VKK V + P+ L+ + + P +P Sbjct: 266 KDMEIVKKECEVSEEQGKILDGH-QKPIMLLDKKKNAQILCPSVAPGNPKVGVMLPYAPV 324 Query: 125 KKLIETYG----HP--LAIPSANRSGQISITNVKHILSSSICKEIPLII-DGGISKIGLE 177 + LI TY P L + S N SG + H + + ++ +I + Sbjct: 325 QLLIFTYDDGIEMPEFLVMTSGNTSGAPICRDD-HEAETELSGFCDCMLSHDRKIRIRAD 383 Query: 178 STIVNVQCEKKVRILRPGG 196 ++++ +K I R G Sbjct: 384 DSVMDFYEDKPYMIRRSRG 402 >gi|260460213|ref|ZP_05808465.1| (NiFe) hydrogenase maturation protein HypF [Mesorhizobium opportunistum WSM2075] gi|259033858|gb|EEW35117.1| (NiFe) hydrogenase maturation protein HypF [Mesorhizobium opportunistum WSM2075] Length = 807 Score = 76.3 bits (187), Expect = 6e-12, Method: Composition-based stats. Identities = 35/147 (23%), Positives = 60/147 (40%), Gaps = 6/147 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + + A + G +AI Y LA D+ P A+ L + K+R A P D+ + Sbjct: 215 DDVDAALSLIQKGEIVAIKALGGYQLACDATRPEAVALLRQRKRRDA-KPFALMARDVDV 273 Query: 70 VKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 V++HA+V D + LA P ++L + L+T F +P L Sbjct: 274 VRRHATVSDAEAAALASREAP---IVLLAATGPEKLPAEIAPGLQTLGFMLPSTPLHLLL 330 Query: 128 IETYGHPLAIPSANRSGQISITNVKHI 154 + G P+ + S N S + + + Sbjct: 331 LRRMGRPVVMTSGNLSDEPQLIDDAEA 357 >gi|255658198|ref|ZP_05403607.1| [NiFe] hydrogenase maturation protein HypF [Mitsuokella multacida DSM 20544] gi|260849506|gb|EEX69513.1| [NiFe] hydrogenase maturation protein HypF [Mitsuokella multacida DSM 20544] Length = 782 Score = 76.3 bits (187), Expect = 6e-12, Method: Composition-based stats. Identities = 35/203 (17%), Positives = 71/203 (34%), Gaps = 24/203 (11%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 ++A+R L +G AI G+ D+ + A+ RL +K RP P Sbjct: 198 ADAIRAVRRVLASGGIAAIK-----GIGGFHLACDATDEAAVHRLRTLKHRPQ-KPFAVM 251 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 + D ++ ++P + P+ L+L + + P +P Sbjct: 252 MRDEETARRACHLEPGEAEMMTGH-QKPI-LLLRRREDSPLAPSVAPGNPKVGVMLPYAP 309 Query: 124 TKKLI-------ETYGHPLAI--PSANRSGQISITNVKHILSSSICKEIPLII-DGGISK 173 + LI ET P + S N SG N + ++ +I+ + Sbjct: 310 VQMLIFDYPEDHETPEVPAMLVMTSGNPSGAPICHNDEEA-EETLAPLCDVILSHDRRIR 368 Query: 174 IGLESTIVNVQCEKKVRILRPGG 196 + + ++++ + + R G Sbjct: 369 LRADDSVMDWFAGRPYMVRRSRG 391 >gi|213964976|ref|ZP_03393175.1| [NiFe] hydrogenase maturation protein HypF [Corynebacterium amycolatum SK46] gi|213952512|gb|EEB63895.1| [NiFe] hydrogenase maturation protein HypF [Corynebacterium amycolatum SK46] Length = 802 Score = 76.3 bits (187), Expect = 6e-12, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 51/160 (31%), Gaps = 16/160 (10%) Query: 13 RKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 R+A LD G +A V G+ D+ N A +L K+RP PL + Sbjct: 223 RRAHALLDDGALLA-----VKGIGGFHLVCDATNDAACEKLRLRKRRP-DKPLAVMAPTV 276 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 + + P ++ + + L L + +P L Sbjct: 277 DTAAQLVELTEQEKRFLDS--PEAPIVIAPKQRSGPLSNLIAPGLDSFGIMLPYSGIHLL 334 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 + PL + S N SG+ T+ L + I Sbjct: 335 L--CDRPLVVTSGNLSGEPVCTDNADALK-KLGHIADAFI 371 >gi|50365446|ref|YP_053871.1| putative translation factor [Mesoplasma florum L1] gi|50364002|gb|AAT75987.1| putative translation factor [Mesoplasma florum L1] Length = 168 Score = 76.3 bits (187), Expect = 6e-12, Method: Composition-based stats. Identities = 39/177 (22%), Positives = 64/177 (36%), Gaps = 21/177 (11%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAV--DSRNPTAIRRLYEIKKRPAMNPLICH 63 + + + KA L I +PT+T+YGL+ + N +R+ IK PLI Sbjct: 1 MLSKDLIIKATNALIENEIIILPTDTIYGLSAIWNFENE---KRINNIKNANEEKPLIVL 57 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 +S+I + + L T++ S N KT R+ Sbjct: 58 ISNIEQLSILGIEKNEFVDLLFN---ESTTVIFKTKS----------NNKTIAVRLIIRD 104 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 K I P+ S N G+ I +++ + I + D I+ I S I Sbjct: 105 DIKKIIEKTGPIFSTSVNLHGEQPINEKDELIN--FDRSINVYFDKVITNI-KPSKI 158 >gi|57233776|ref|YP_182140.1| [NiFe] hydrogenase maturation protein HypF [Dehalococcoides ethenogenes 195] gi|57224224|gb|AAW39281.1| [NiFe] hydrogenase maturation protein HypF [Dehalococcoides ethenogenes 195] Length = 763 Score = 76.3 bits (187), Expect = 6e-12, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 57/165 (34%), Gaps = 15/165 (9%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 ++A+ +A + L G +AI GL D+ N A+ L K RP+ P Sbjct: 205 ADAIAEAAKLLKDGRILAIR-----GLGGFLLAADATNQLAVNTLRRRKHRPS-KPFAVM 258 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CG 122 + DI+ +KH + L P ++ + I P + + Sbjct: 259 LPDIAEARKHCFISAEEEKLL--ISPAAPIVLCKWNRESPICPETAPKQNYLGIMLAYTP 316 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 L++ G PL + S N S + + L + + Sbjct: 317 LHHLLLKETGKPLIMTSGNLSAEPIAKDNDEALK-RLGNIADYFL 360 >gi|327399233|ref|YP_004340102.1| SUA5/yciO/yrdC domain-containing protein [Hippea maritima DSM 10411] gi|327181862|gb|AEA34043.1| SUA5/yciO/yrdC domain protein [Hippea maritima DSM 10411] Length = 192 Score = 76.3 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 48/202 (23%), Positives = 77/202 (38%), Gaps = 16/202 (7%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 M I + A L AG I P T+YG + + A +R++ +K+R P I Sbjct: 1 MIIINEKNPNPAIALLKAGGVIICPAFTIYGFSAFLFSKAANKRIFLLKRRSINKPFIVI 60 Query: 64 VSD--ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 I V A D L+ L F + + + + ++ + KT Sbjct: 61 AHKDFILDVAFEADKDKLAFLLDNGFS-------VLIKTKIKLPHWASFSSKTVFRLANT 113 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 F KK+ P+ S N S I + I+ + I+ G + +G STIV Sbjct: 114 EFLKKVC--SVGPITSTSVNISNSGEINSPLQIVK-LYKNRVNGIVLGKVKGVG--STIV 168 Query: 182 NVQCEKKVRILRPGGLEIETLK 203 + + +LR G IE L+ Sbjct: 169 EL-NRGVITVLRRG-FNIEKLE 188 >gi|308050856|ref|YP_003914422.1| (NiFe) hydrogenase maturation protein HypF [Ferrimonas balearica DSM 9799] gi|307633046|gb|ADN77348.1| (NiFe) hydrogenase maturation protein HypF [Ferrimonas balearica DSM 9799] Length = 771 Score = 75.9 bits (186), Expect = 7e-12, Method: Composition-based stats. Identities = 36/150 (24%), Positives = 61/150 (40%), Gaps = 4/150 (2%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 AL +A + L AG +AI Y LAVD+ N A+ L + K RP+ P V+D++ Sbjct: 202 EQALTEAVDALRAGQIVAIKALGGYHLAVDASNDQAVSTLRQRKHRPS-KPFALMVADLA 260 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128 M ++ A L P ++L + + + + + L+ Sbjct: 261 MAHTLVQLNDAEA--AALTSPAAPIVLLRPRTDAPLAASVAPGMAQLGVMLASNPLQHLL 318 Query: 129 -ETYGHPLAIPSANRSGQISITNVKHILSS 157 + G L + S N SG+ + H L+ Sbjct: 319 MKRMGRALVMTSGNASGRPPCIDDGHALAE 348 >gi|260597698|ref|YP_003210269.1| carbamoyltransferase hypF [Cronobacter turicensis z3032] gi|260216875|emb|CBA30419.1| Carbamoyltransferase hypF [Cronobacter turicensis z3032] Length = 764 Score = 75.9 bits (186), Expect = 7e-12, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 65/165 (39%), Gaps = 21/165 (12%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 AL A + L+ GL +AI G+ D++NP A+ RL K RPA PL Sbjct: 213 EAALEAAIDALNEGLIVAIK-----GIGGFHLACDAQNPDAVARLRARKHRPA-KPLAVM 266 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 ++D + + A A+L P +++D + L +P Sbjct: 267 LTDAAGLPDDAR--------AQLTTPAAPIVLVDNAHLPPLCEAIAPGLNETGVMLPANP 318 Query: 124 TKKLI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 + L+ + G PL + S NRSG+ LS + + + Sbjct: 319 LQHLLMQGVGRPLVMTSGNRSGEPPALTNAQALS-QLGEIADGFL 362 >gi|15606085|ref|NP_213462.1| transcriptional regulatory protein HypF [Aquifex aeolicus VF5] gi|2983269|gb|AAC06863.1| transcriptional regulatory protein HypF [Aquifex aeolicus VF5] Length = 746 Score = 75.9 bits (186), Expect = 7e-12, Method: Composition-based stats. Identities = 39/195 (20%), Positives = 72/195 (36%), Gaps = 20/195 (10%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 AL E + G +A V G+ ++ N ++R L + K+R + P Sbjct: 202 EALELLIEEIKIGKIVA-----VKGVGGFHLICNATNEESVRTLRKRKRR-SEKPFAVMF 255 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123 + V+ +A+ L K P ++ + ++ P + LK +P Sbjct: 256 KSLEQVEAYAN----PTELEKALLISPERPIVLIQKKKELAPSVSPGLKRVGAFLPYSPL 311 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG--GISKIGLESTIV 181 ++ + P+ SAN S + I + K L + + LI+ I + +S +V Sbjct: 312 HHLILNSLDFPVVATSANISEEPIIKDNKEAL-EKLGELADLILVHNRDIKRRCDDS-VV 369 Query: 182 NVQCEKKVRILRPGG 196 V I R G Sbjct: 370 KVVSGVPTPIRRSRG 384 >gi|32476636|ref|NP_869630.1| low molecular weight protein-tyrosine-phosphatase ywlE [Rhodopirellula baltica SH 1] gi|32447182|emb|CAD77008.1| probable low molecular weight protein-tyrosine-phosphatase ywlE [Rhodopirellula baltica SH 1] Length = 461 Score = 75.9 bits (186), Expect = 7e-12, Method: Composition-based stats. Identities = 55/258 (21%), Positives = 89/258 (34%), Gaps = 47/258 (18%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYE--IKKRPAMN--------- 58 + + ++ + L G I +P+ETVYGL S P A+RRL + R Sbjct: 51 DIVHRSVQALVEGQVIGVPSETVYGLVASSLCPAAVRRLAQWTATCRGWSTESDASTAGQ 110 Query: 59 -----------PLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTD--- 103 + V V + L L++ +PGPLTL+ D T Sbjct: 111 AGFVAPPADAGSIALCVRSTEAVGDFLMPMTILGRRLSERCFPGPLTLIADCDDTVSAMS 170 Query: 104 -IHPLSTANLKT------------ACFRVPCGFTKKLI-ETYGHPLAIPSANRSGQISIT 149 + L+ FRV I PL T Sbjct: 171 CLPESVAGTLRAGAGQRPSPAGGPVAFRVSGHRLLSHIHRYLSAPLVWGEIGLPDASPPT 230 Query: 150 NVK---HILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAI 206 + L++ + +PL++D GIS+ G E T+V V + R G ++ + + + Sbjct: 231 TAEKLQSALNAGTGESLPLLLDDGISRYGDEGTVVRVTGNH-WHVQRTGVIQQAAMNQFV 289 Query: 207 SVELE-YCVDETSTPQSP 223 + C T +SP Sbjct: 290 KPVIALVCTGNTC--RSP 305 >gi|313665083|ref|YP_004046954.1| hypothetical protein MSB_A0197 [Mycoplasma leachii PG50] gi|312949768|gb|ADR24364.1| conserved hypothetical protein [Mycoplasma leachii PG50] Length = 166 Score = 75.9 bits (186), Expect = 8e-12, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 63/158 (39%), Gaps = 19/158 (12%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + KA + L + +PT+T+YGL+ I ++ E+KK PLI +S ++ + Sbjct: 7 INKAIKLLKNNQIVILPTDTIYGLSAIYSLENQI-KINEVKKADINKPLIVLISSLNQLN 65 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLIET 130 +D P T++ ++ + R V K++I Sbjct: 66 DLDILDLTDKDFLLNT--DPTTVIFKTTTS------------SIAIRLVKRDDMKQIINN 111 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 G P+ S N G +TN K +++ + I + D Sbjct: 112 TG-PIISTSVNIHGFDPLTNKKDLIN--FNQNIEVFFD 146 >gi|296272904|ref|YP_003655535.1| (NiFe) hydrogenase maturation protein HypF [Arcobacter nitrofigilis DSM 7299] gi|296097078|gb|ADG93028.1| (NiFe) hydrogenase maturation protein HypF [Arcobacter nitrofigilis DSM 7299] Length = 742 Score = 75.9 bits (186), Expect = 8e-12, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 68/170 (40%), Gaps = 15/170 (8%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59 ++ + L+K + +++G +AI G+ D+ N A+++L E K RP P Sbjct: 196 ELSSNETLKKIAQKINSGFIVAIK-----GIGGFHIICDATNENAVKKLREKKNRP-TKP 249 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I +K ++ + L P+ +++D S I N+ + Sbjct: 250 FAVMFKYIDEIKSCTNISKKEEEII-LCKEKPI-VIVDKNSMGKISEQIAPNINRLGVFL 307 Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 P L E +P+ SAN + I +V+ I + + + ++D Sbjct: 308 PYSPLHILLFEYLNNPIIATSANLKDEPIIKSVEEIFN-KLGNVVDYVLD 356 >gi|72537501|gb|AAZ73678.1| HypF [Lyngbya majuscula CCAP 1446/4] Length = 788 Score = 75.9 bits (186), Expect = 8e-12, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 58/165 (35%), Gaps = 15/165 (9%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 + + C L G +AI GL D+ N +++L K+RP PL Sbjct: 211 DEVDAVCTLLQRGQIVAIK-----GLGGFHLACDATNEEIVQKLRLRKRRP-DKPLALMA 264 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS-TTDIHPLSTANLKTACFRVP-CG 122 DI++++K+ V P L + P+ L+ S I + F +P Sbjct: 265 RDINIIEKYCFVTPEERELLESSA-APIVLLRRKKSLKDGIAASVAPHQNYLGFMLPYTP 323 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 + P+ + SAN S + + S + I Sbjct: 324 LHHLALRRLEIPIVLTSANFSDDPQCIDNAEV-RSKLSNVADYFI 367 >gi|284038739|ref|YP_003388669.1| (NiFe) hydrogenase maturation protein HypF [Spirosoma linguale DSM 74] gi|283818032|gb|ADB39870.1| (NiFe) hydrogenase maturation protein HypF [Spirosoma linguale DSM 74] Length = 778 Score = 75.9 bits (186), Expect = 8e-12, Method: Composition-based stats. Identities = 39/175 (22%), Positives = 64/175 (36%), Gaps = 18/175 (10%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPA 56 Q ++ SN ++++ + L +G IA V G+ D+ N AI +L E K RP Sbjct: 193 QCITRDQSNIIQQSIDVLASGRTIA-----VKGIGGFLLLCDATNADAIHQLRERKHRP- 246 Query: 57 MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLK 113 PL +I +++ + L P + LD + L Sbjct: 247 TKPLAVLYPNIDQLQQDCFLADDERALLTS--PASPIVALDKRPELPSGLVADQIAPGLN 304 Query: 114 TACFRVPCGFTKKLI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 +P L+ + +G PL S NRSG + L + LI+ Sbjct: 305 QLGVMLPYTPLLALLADAFGKPLVATSGNRSGSPICYTNEQAL-DQLSAVADLIV 358 >gi|298345911|ref|YP_003718598.1| hydrogenase maturation protein [Mobiluncus curtisii ATCC 43063] gi|298235972|gb|ADI67104.1| hydrogenase maturation protein [Mobiluncus curtisii ATCC 43063] Length = 774 Score = 75.9 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 60/167 (35%), Gaps = 17/167 (10%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 + AL +A + L AG +A V G+ D+RN A+ RL + K R P Sbjct: 218 AAALDEARQRLRAGQILA-----VKGIGGFHLMCDARNEAAVARLRKRKDRG-DKPFAVM 271 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CG 122 V+D + A +D L + P+ ++ D+ P L +P Sbjct: 272 VADAVTAARLARLDADQLRTLQTAA-RPI-VIAPFGQEYDLAPAVAPGLGDVGILLPYAP 329 Query: 123 FTKKLI--ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 +L+ E L S N +G+ + + + + + Sbjct: 330 LHLELLSGECAQMALVATSGNLAGEPLCFTNQDA-AERLAGIVDAFV 375 >gi|296132814|ref|YP_003640061.1| (NiFe) hydrogenase maturation protein HypF [Thermincola sp. JR] gi|296031392|gb|ADG82160.1| (NiFe) hydrogenase maturation protein HypF [Thermincola potens JR] Length = 763 Score = 75.9 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 33/172 (19%), Positives = 58/172 (33%), Gaps = 16/172 (9%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPA 56 +++ + D +R+ E L G IAI GL D++N A+R L K R Sbjct: 195 EVLPVDDP--IRETAELLRRGHIIAIK-----GLGGYHLACDAKNEQAVRELRSRKYR-E 246 Query: 57 MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 P D+ + + L K P+ L+ + D+ Sbjct: 247 DKPFAVMFKDVDSALSYCHISVSEERLLKSI-KRPIVLLKKKKESYDLAYQVAPENDFLG 305 Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 +P L + + PL + SAN S + + L + + + Sbjct: 306 VLLPYTPLHYILFKYFTGPLVMTSANVSDEPIAYKDRDAL-ERLAEIADYFL 356 >gi|258614608|ref|ZP_05712378.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium DO] Length = 76 Score = 75.9 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%) Query: 265 ISLNLSKTGKLKEAAFNLFNYMKIADD--SGASSIAFSSIPNHGLGIAINNRLERAAA 320 ++ + ++ AA LF ++ D+ G I P GLG A NRL++AA Sbjct: 13 AAVYMYNDNSVEAAAKGLFAGLRGLDEPTLGLDLIFVQVYPETGLGNAYMNRLKKAAG 70 >gi|327540244|gb|EGF26833.1| Protein-tyrosine phosphatase, low molecular weight [Rhodopirellula baltica WH47] Length = 432 Score = 75.9 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 54/258 (20%), Positives = 89/258 (34%), Gaps = 47/258 (18%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYE--IKKRPAMN--------- 58 + + ++ + L G I +P+ETVYGL S P A+RRL + R Sbjct: 22 DIVHRSVQALVEGQVIGVPSETVYGLVASSLCPAAVRRLAQWTATCRGWSTESDASTAGQ 81 Query: 59 -----------PLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTD--- 103 + V V + L L++ +PGPLTL+ D + Sbjct: 82 AGFVAPPADAGSIALCVRSTEAVGDFLMPMTILGRRLSERCFPGPLTLIADCDDSVSAMS 141 Query: 104 -IHPLSTANLKT------------ACFRVPCGFTKKLI-ETYGHPLAIPSANRSGQISIT 149 + L+ FRV I PL T Sbjct: 142 CLPESVAGTLRAGAGQRPSPAGGPVAFRVSGHRLLSHIHRYLSAPLVWGEIGLPDASPPT 201 Query: 150 NVK---HILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAI 206 + L++ + +PL++D GIS+ G E T+V V + R G ++ + + + Sbjct: 202 TAEKLQSALNAGTGESLPLLLDDGISRYGDEGTVVRVTGNH-WHVQRTGVIQQAAMNQFV 260 Query: 207 SVELE-YCVDETSTPQSP 223 + C T +SP Sbjct: 261 KPVIALVCTGNTC--RSP 276 >gi|221103449|ref|XP_002169716.1| PREDICTED: similar to predicted protein, partial [Hydra magnipapillata] Length = 143 Score = 75.9 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 63/130 (48%), Gaps = 9/130 (6%) Query: 79 LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAI 137 +S ++ + PGP+TLV ++ ++ + R+P C F + L + P+A+ Sbjct: 6 ISDNVLEDLLPGPVTLVFQR--SSLLNSYLNPTSNSIGVRIPKCAFIQTLAQKCQQPIAL 63 Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGI----SKIGLESTIVNVQCEKKVRILR 193 SAN S +S ++ + ++ LI+DGG + L ST+V++ +++ I+R Sbjct: 64 TSANISSAMSSLDINE--FEELWPKLDLIVDGGTLGSSEQSRLGSTVVDLTKKREFTIIR 121 Query: 194 PGGLEIETLK 203 G E + Sbjct: 122 EGCAYNEVVN 131 >gi|89093087|ref|ZP_01166038.1| Hydrogenase maturation protein HypF [Oceanospirillum sp. MED92] gi|89082737|gb|EAR61958.1| Hydrogenase maturation protein HypF [Oceanospirillum sp. MED92] Length = 782 Score = 75.5 bits (185), Expect = 9e-12, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 63/183 (34%), Gaps = 34/183 (18%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLI 61 TD + + A + G +AI G+ D++NP A++RL + K+RP P Sbjct: 199 TDPDPIGAALALMQQGKIVAIK-----GIGGFHLVCDAQNPEAVQRLRDRKQRPE-KPFA 252 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 +++ ++ A + K P+ L + + + L +P Sbjct: 253 VMGANLESLRSIAELSRAREERLKGH-DAPICLCPKVEDA--LPDVVAPGLNWLGIMLPH 309 Query: 122 GFTKKLI--ETYGHPLAI-------------PSANRSGQISITNVKHILSSSICKEIPLI 166 L+ P SAN SG IT + L K++ I Sbjct: 310 TPIHYLLFHRAAQQPTGTAWLKEQQTLTLVMTSANLSGNPLITQDEEAL-----KQLAHI 364 Query: 167 IDG 169 DG Sbjct: 365 ADG 367 >gi|254500948|ref|ZP_05113099.1| (NiFe) hydrogenase maturation protein HypF [Labrenzia alexandrii DFL-11] gi|222437019|gb|EEE43698.1| (NiFe) hydrogenase maturation protein HypF [Labrenzia alexandrii DFL-11] Length = 773 Score = 75.5 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 44/204 (21%), Positives = 72/204 (35%), Gaps = 22/204 (10%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNP 59 I ++ +R A L AG IA+ GL D+ N A+ RL E KKRP P Sbjct: 198 RIETADPIRWAASRLAAGEIIALK-----GLGGFHLAVDATNDAAVARLREKKKRP-HKP 251 Query: 60 LICHVSDISMVKKHASVDPLSLHLAK-LFWPGPLTLVLDLLSTTDIHPLSTA----NLKT 114 L V D+ + V L + P ++L L + + P + L Sbjct: 252 LAVMVRDLEQARTICHVSDREAALMEDRAAP---IVLLRLRAKSAEKPALSGHLAPGLDQ 308 Query: 115 ACFRVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173 +P LI PL + S NRS + + ++ + + Sbjct: 309 CGLMLPATPLHHLLIAAVPGPLVMTSGNRSEDPQVITNEDA-RRNLGQIADGFLMHDREI 367 Query: 174 IG-LESTIVNVQCEKKVRILRPGG 196 + L+ +++ V + R G Sbjct: 368 VNRLDDSVMRADRGGPVILRRARG 391 >gi|225848581|ref|YP_002728744.1| (NiFe) hydrogenase maturation protein HypF [Sulfurihydrogenibium azorense Az-Fu1] gi|225643946|gb|ACN98996.1| (NiFe) hydrogenase maturation protein HypF [Sulfurihydrogenibium azorense Az-Fu1] Length = 747 Score = 75.5 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 57/164 (34%), Gaps = 19/164 (11%) Query: 14 KACEFLDA----GLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 +A E L + G +A V G+ D+ + TA+ L E KKR P Sbjct: 203 EAIEILRSLILEGKIVA-----VKGIGGFHLVCDATDDTAVSTLRERKKR-FEKPFAVMF 256 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123 D+ VK + L P+ L+ TD+ + +P Sbjct: 257 KDLETVKVYGDPSNFDEILINSA-EKPIVLI-KKKENTDLSEKVAPGIDRIGVFLPYSPL 314 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 L++ G PL + SAN S + + + + + I+ Sbjct: 315 HHLLLKIVGKPLVMTSANLSDEPIVKDNEEAF-EKLSDFTDYIL 357 >gi|239616961|ref|YP_002940283.1| (NiFe) hydrogenase maturation protein HypF [Kosmotoga olearia TBF 19.5.1] gi|239505792|gb|ACR79279.1| (NiFe) hydrogenase maturation protein HypF [Kosmotoga olearia TBF 19.5.1] Length = 747 Score = 75.5 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 45/202 (22%), Positives = 76/202 (37%), Gaps = 20/202 (9%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 A+++A + AG +AI G+ +P AI++L +K RP P Sbjct: 208 EEAVKQAIGIIRAGGTVAIK-----GIGGIHLVCKP-DPDAIKKLRNLKDRPR-KPFAIM 260 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 D+ VKK A V + L P ++ L DI + T +P Sbjct: 261 AKDLETVKKFAYVGEVEERLLLS----PARPIVLLRKRGDIFYDVSPGFHTIGVMLPYTG 316 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII--DGGISKIGLESTIV 181 L+ L + S N SG++ + L+ + K ++ D I +S ++ Sbjct: 317 IHYLLLEDFFVLVMTSGNISGEMLCADNFEALT-KLSKLSDGLLLHDRKIVNRCDDS-VI 374 Query: 182 NVQCEKKVRILRPGGLEIETLK 203 V K V + + G E +K Sbjct: 375 KVLAGKPVFVRKSRGFIPEVIK 396 >gi|298492330|ref|YP_003722507.1| (NiFe) hydrogenase maturation protein HypF ['Nostoc azollae' 0708] gi|298234248|gb|ADI65384.1| (NiFe) hydrogenase maturation protein HypF ['Nostoc azollae' 0708] Length = 781 Score = 75.5 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 54/164 (32%), Gaps = 15/164 (9%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 + + C L G +AI GL D+ TA+++L E K+R P Sbjct: 205 DDVDAVCTLLQKGQIVAIK-----GLGGIHLACDATQETAVQKLRERKRR-YHKPFALMA 258 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123 DI+++ ++ + L L P ++L+ S + T F + Sbjct: 259 RDINIINEYCYISDLEEELLTS--PAAPIVLLERKSEKQVASSVAPGQYTLGFMLAYTPL 316 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 ++ P+ + S N + + K + Sbjct: 317 HHLILRRMNRPIVLTSGNIPDEPQCI-ANEDAKDKLGKIADYFL 359 >gi|117925134|ref|YP_865751.1| (NiFe) hydrogenase maturation protein HypF [Magnetococcus sp. MC-1] gi|117608890|gb|ABK44345.1| (NiFe) hydrogenase maturation protein HypF [Magnetococcus sp. MC-1] Length = 758 Score = 75.5 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 49/254 (19%), Positives = 86/254 (33%), Gaps = 46/254 (18%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59 I +AL +A L GL +A V G+ D+R+ A+ L + K+RP P Sbjct: 194 KIIGESALTQAVAGLQQGLIVA-----VKGVGGYHLLCDARHAPAVETLRQRKQRP-HKP 247 Query: 60 LICHVSDISM-----VKKHASVD-PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK 113 L + + V + + P L P +++ L P L Sbjct: 248 LAVMLPQLGADGLQGVAAYVKLSEPYGRALLDPSRP---IVLIPLKPDHGFAPGVAPGLD 304 Query: 114 TACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII----- 167 +P L++ +G PL S N SG+ + + + + + Sbjct: 305 EVGIMLPYSPLHHLLLQEWGGPLVATSGNLSGEPVLLDAQAA-EQRLAGVADAFLHHNRP 363 Query: 168 -----DGGIS----------KIGLESTIVNVQCEKKVR--ILRPGGLEIE--TLKRAISV 208 D G+ ++G S + + + + L GG L A V Sbjct: 364 ILRPADDGVVRLIAGKVRRLRVGRGSAPLELTLPQPLLQPSLALGGQMKNCVALGWAARV 423 Query: 209 ELEYCVDETSTPQS 222 L + E ++P+S Sbjct: 424 VLSAHIGEMASPRS 437 >gi|291548872|emb|CBL25134.1| [NiFe] hydrogenase maturation protein HypF [Ruminococcus torques L2-14] Length = 792 Score = 75.5 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 35/207 (16%), Positives = 73/207 (35%), Gaps = 19/207 (9%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPA 56 + + + S+A+ +A + G +A V G+ D+ N A+ L + K+RPA Sbjct: 197 RTIDMKGSDAITEARRVISEGGIVA-----VKGIGGFHLCCDASNEAAVELLRKRKRRPA 251 Query: 57 MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 P ++ +V+ + + L LV + T + Sbjct: 252 -KPFAVMARNLEVVQSVCELSKEQEEILTGHQKPILLLVRKEIETKQLCSSVAPGNPKVG 310 Query: 117 FRVPCGFTKKLIETY----GHP--LAIPSANRSGQISITNVKHILSSSICKEIPLII-DG 169 +P + L+ Y P L + S N SG + + L + + I+ Sbjct: 311 VMLPYAPVQLLLFQYPDGIKMPDFLVMTSGNVSGAPICRSDEEAL-EELSEFCDCILSHD 369 Query: 170 GISKIGLESTIVNVQCEKKVRILRPGG 196 ++ + ++++ + I R G Sbjct: 370 RKIRVRADDSVMDFYKNRPYMIRRSRG 396 >gi|254393345|ref|ZP_05008492.1| hydrogenase maturation protein HypF [Streptomyces clavuligerus ATCC 27064] gi|197706979|gb|EDY52791.1| hydrogenase maturation protein HypF [Streptomyces clavuligerus ATCC 27064] Length = 771 Score = 75.1 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 40/202 (19%), Positives = 73/202 (36%), Gaps = 29/202 (14%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 ++ + A L G +A V L D R+P A L K+R + P Sbjct: 207 ADPVATAAGLLRDGHILA-----VKALGGYQLMADPRSPAATAELRARKERSS-KPFALL 260 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 V D + ++ +D L + PG ++L + + P T +P Sbjct: 261 VRDSATAAEYTVLDDRERRLLES--PGRPIVLLRARPDSSLAPGVAPGSATLGLMLPATP 318 Query: 124 TKKLIETYGHPL-AIPSANRSGQISITNVKHILS-------SSI--CKEIPLIIDGGISK 173 + L+ P+ SAN + + L + + +EI + +D I++ Sbjct: 319 LQHLLLAAAGPVLIATSANAPDEPMARTEEEALRGLRGLADAFLVHDREIHMRVDDSIAR 378 Query: 174 IGLESTIVNVQCEKKVRILRPG 195 + + ST+ E KV +R Sbjct: 379 V-VHSTV-----EPKVTFVRRA 394 >gi|294811021|ref|ZP_06769664.1| Hydrogenase maturation protein [Streptomyces clavuligerus ATCC 27064] gi|326439637|ref|ZP_08214371.1| hydrogenase maturation protein HypF [Streptomyces clavuligerus ATCC 27064] gi|294323620|gb|EFG05263.1| Hydrogenase maturation protein [Streptomyces clavuligerus ATCC 27064] Length = 769 Score = 75.1 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 40/202 (19%), Positives = 73/202 (36%), Gaps = 29/202 (14%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 ++ + A L G +A V L D R+P A L K+R + P Sbjct: 205 ADPVATAAGLLRDGHILA-----VKALGGYQLMADPRSPAATAELRARKERSS-KPFALL 258 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 V D + ++ +D L + PG ++L + + P T +P Sbjct: 259 VRDSATAAEYTVLDDRERRLLES--PGRPIVLLRARPDSSLAPGVAPGSATLGLMLPATP 316 Query: 124 TKKLIETYGHPL-AIPSANRSGQISITNVKHILS-------SSI--CKEIPLIIDGGISK 173 + L+ P+ SAN + + L + + +EI + +D I++ Sbjct: 317 LQHLLLAAAGPVLIATSANAPDEPMARTEEEALRGLRGLADAFLVHDREIHMRVDDSIAR 376 Query: 174 IGLESTIVNVQCEKKVRILRPG 195 + + ST+ E KV +R Sbjct: 377 V-VHSTV-----EPKVTFVRRA 392 >gi|255322290|ref|ZP_05363436.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter showae RM3277] gi|255300663|gb|EET79934.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter showae RM3277] Length = 741 Score = 75.1 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 44/204 (21%), Positives = 74/204 (36%), Gaps = 19/204 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 D+ + ++A ++ G +A V GL + L E KKRP P Sbjct: 199 DNESAKQAARLINEGKILA-----VKGLGGFHLMCR-LKEDTVGLLRERKKRP-KKPFAV 251 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 D++ KK+A + P L P+ +VL L + + L +P Sbjct: 252 MCKDLARAKKYAQISPEEQQLLSSNL-KPI-VVLQSLPSARVPSNLAPGLNKIGIFLPYT 309 Query: 123 FTKKLI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES--T 179 L+ E + SAN SG+ I K L + I +D +I S + Sbjct: 310 GVHLLLFEYLEGDVIATSANVSGEPIIYGEKD-LREKLGGAIDFYLDNDR-EIHSPSDDS 367 Query: 180 IVNVQCEKKVRILRPGGLEIETLK 203 I V + + I G+ + ++ Sbjct: 368 IAFVAGGETIFIRTSRGVHPKFIR 391 >gi|261344835|ref|ZP_05972479.1| [NiFe] hydrogenase maturation protein HypF [Providencia rustigianii DSM 4541] gi|282567284|gb|EFB72819.1| [NiFe] hydrogenase maturation protein HypF [Providencia rustigianii DSM 4541] Length = 759 Score = 75.1 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 62/154 (40%), Gaps = 13/154 (8%) Query: 10 NALRKACEFLDAGLPIAIPTETVYG-----LAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 AL++ + L AG AI G LA D+ N A+ +L + K RP+ PL + Sbjct: 201 EALKQTAQRLLAGEIAAIK-----GVGGFHLACDATNSPAVNQLRQRKHRPS-KPLAVMI 254 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 I+ + + L P+ L+ + + + + P +L+ +P Sbjct: 255 PSINWLAEQGVEVTDGLRALLQSSAAPIVLI-PIWANSLLSPDIAPHLQEIGVMLPSNPL 313 Query: 125 KKLI-ETYGHPLAIPSANRSGQISITNVKHILSS 157 + L+ PL + S N SG+ + + L+ Sbjct: 314 QHLLMSEVNTPLVMTSGNASGKPPVLTDQEALTD 347 >gi|292491450|ref|YP_003526889.1| (NiFe) hydrogenase maturation protein HypF [Nitrosococcus halophilus Nc4] gi|291580045|gb|ADE14502.1| (NiFe) hydrogenase maturation protein HypF [Nitrosococcus halophilus Nc4] Length = 781 Score = 74.7 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 34/195 (17%), Positives = 66/195 (33%), Gaps = 16/195 (8%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 ++ + A + L G +AI GL D A+ RL K+R PL Sbjct: 203 ADPIAAAAQLLLKGAIMAIK-----GLGGFHLACDGTQFEAVARLRSNKRR-YEKPLALM 256 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CG 122 D+ M++++ V + L + P ++L + + F +P Sbjct: 257 ARDLEMIRRYCQVTEEAAQLLQS--PAAPIVLLPREGKGRVAENVAPEQQYLGFMLPYTP 314 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIV 181 L PL + S N S + + + S + + I ++ ++V Sbjct: 315 LHHLLCAELDQPLVMTSGNLSEEPPCLHNP-VARSKLAGIADYFLLHNRDIINRVDDSVV 373 Query: 182 NVQCEKKVRILRPGG 196 + + + R G Sbjct: 374 RIMAGRPRWLRRARG 388 >gi|89255812|ref|YP_513174.1| Sua5_yciO_yrdC family protein [Francisella tularensis subsp. holarctica LVS] gi|167009603|ref|ZP_02274534.1| Sua5_yciO_yrdC family protein [Francisella tularensis subsp. holarctica FSC200] gi|254367173|ref|ZP_04983204.1| sua5/yciO/yrdC family protein [Francisella tularensis subsp. holarctica 257] gi|89143643|emb|CAJ78841.1| Sua5_yciO_yrdC family protein [Francisella tularensis subsp. holarctica LVS] gi|134252994|gb|EBA52088.1| sua5/yciO/yrdC family protein [Francisella tularensis subsp. holarctica 257] Length = 121 Score = 74.7 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 47/96 (48%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 + + L++ LD IAIPT++ Y LA ++ I ++ +I+ + + D Sbjct: 12 NNLSELKELANILDNDGIIAIPTDSGYALACRMKSKKGIDKIIKIRNFDSSHNFTLCCKD 71 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTT 102 +S + ++A VD + L K + PGP T +L+ Sbjct: 72 LSEIFEYAKVDNNAYRLLKRYTPGPYTFILNATKKV 107 >gi|300088497|ref|YP_003759019.1| (NiFe) hydrogenase maturation protein HypF [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528230|gb|ADJ26698.1| (NiFe) hydrogenase maturation protein HypF [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 774 Score = 74.7 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 62/169 (36%), Gaps = 15/169 (8%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59 ++ + L A L G +A V GL D+ +P A+ L + K+RPA P Sbjct: 201 TMPAAEPLATAAGLLKNGHILA-----VRGLGGFLLACDATDPVAVAELRQRKRRPA-KP 254 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 ++D++ + V P L K P+ ++L L + P L+ + Sbjct: 255 FAVMLADLAATEALCQVSPEEARLLKDTA-API-VLLRLKENGVLAPGVAPGLRHLGVML 312 Query: 120 PCGFTKKLIET-YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 L+ G PL + S N + + + L+ + + Sbjct: 313 AYTPLHHLLMADVGRPLVMTSGNLAEEPIARDNDEALT-RLGGIADYFL 360 >gi|238759093|ref|ZP_04620262.1| Carbamoyltransferase hypF [Yersinia aldovae ATCC 35236] gi|238702641|gb|EEP95189.1| Carbamoyltransferase hypF [Yersinia aldovae ATCC 35236] Length = 762 Score = 74.7 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 60/154 (38%), Gaps = 12/154 (7%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICHV 64 +AL +A L AG +A V GL D+ N A+ RL E K RP+ PL + Sbjct: 202 SALEQAAVALLAGDIVA-----VKGLGGFHLAVDATNAVAVARLRERKHRPS-KPLAVML 255 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 D ++ S + L L P +++ + + L +P Sbjct: 256 PDADWLQSCVSSADHTALLGLLRSPAAPIVLVAKQPESPLCAAVAPELPEIGVMLPANPL 315 Query: 125 KK-LIETYGHPLAIPSANRSGQISITNVKHILSS 157 + L++ PL + S N G+ + + LS+ Sbjct: 316 QHLLLQQVARPLVMTSGNGRGKPPALSNQQALSA 349 >gi|312113761|ref|YP_004011357.1| (NiFe) hydrogenase maturation protein HypF [Rhodomicrobium vannielii ATCC 17100] gi|311218890|gb|ADP70258.1| (NiFe) hydrogenase maturation protein HypF [Rhodomicrobium vannielii ATCC 17100] Length = 823 Score = 74.7 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 34/193 (17%), Positives = 68/193 (35%), Gaps = 16/193 (8%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 + + A + G +AI G+ D+ N A+ RL K+R + PL Sbjct: 208 DEIEAAAALIRDGAIVAIK-----GIGGFHLACDAANEDAVTRLRAGKRR-SGKPLALMA 261 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123 +++MV ++A + P + P+ L+ + T F +P Sbjct: 262 RNVAMVTRYAHIAPPERAALESAA-APIVLLSRRADAPPLASSIAPGQTTLGFMLPYTPL 320 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIVN 182 L+E P+ + S N S + + + + + L+ ++V Sbjct: 321 HHLLMEALPGPIVLTSGNVSDEPQSI-ANDDARERLSEIADAFLMHDRDIVNRLDDSVVR 379 Query: 183 VQCEKKVRILRPG 195 + +VR +R Sbjct: 380 L-AAGRVRTVRRA 391 >gi|74317403|ref|YP_315143.1| hydrogenase maturation protein HypF [Thiobacillus denitrificans ATCC 25259] gi|74056898|gb|AAZ97338.1| Hydrogenase maturation protein HypF [Thiobacillus denitrificans ATCC 25259] Length = 753 Score = 74.7 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 46/203 (22%), Positives = 68/203 (33%), Gaps = 16/203 (7%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 D AL A L AG +A V G+ D+RN A+ L K RPA PL Sbjct: 201 DETALAAAVAQLRAGKIVA-----VKGVGGYHLMCDARNDPAVAALRARKPRPA-KPLAV 254 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 D+ ++ D L P ++L +T + L +P Sbjct: 255 MFRDLDSLRDAVHFDTDDAALLSS--PARPIVLLRKRNTNPLSAAIAPGLGEIGCMLPYS 312 Query: 123 FTKKLIET-YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 L+ +G PL S N SG+ +T + + + + V Sbjct: 313 PLHDLLLHDFGGPLVASSGNLSGEPVLTANAEA-QARLRHLADAFLHHDRPIVRPADDPV 371 Query: 182 NVQCEKKVRILRPG-GLEIETLK 203 + R LR G GL L+ Sbjct: 372 YRRIAGAPRPLRLGRGLAPLELE 394 >gi|290953955|ref|ZP_06558576.1| Sua5_yciO_yrdC family protein [Francisella tularensis subsp. holarctica URFT1] gi|295312676|ref|ZP_06803422.1| Sua5_yciO_yrdC family protein [Francisella tularensis subsp. holarctica URFT1] Length = 106 Score = 74.3 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 47/95 (49%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 + + L++ LD IAIPT++ Y LA ++ I ++ +I+ + + D Sbjct: 12 NNLSELKELANILDNDGIIAIPTDSGYALACRMKSKKGIDKIIKIRNFDSSHNFTLCCKD 71 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLST 101 +S + ++A VD + L K + PGP T +L+ Sbjct: 72 LSEIFEYAKVDNNAYRLLKRYTPGPYTFILNATKK 106 >gi|149194390|ref|ZP_01871487.1| transcriptional regulatory protein HypF [Caminibacter mediatlanticus TB-2] gi|149135565|gb|EDM24044.1| transcriptional regulatory protein HypF [Caminibacter mediatlanticus TB-2] Length = 727 Score = 74.3 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 38/189 (20%), Positives = 66/189 (34%), Gaps = 25/189 (13%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 + + G +AI GL D+ N ++ L + K RP P D Sbjct: 205 IEFIANKIKEGKIVAIK-----GLGGFHLVCDATNEKSVYELRKRKNRPL-KPFAMMFRD 258 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126 I M+KK+A + L L P+ +V I + +P Sbjct: 259 IEMIKKYADISNKEKELI-LSKERPIVIVKKKKELKGIAD----KIDRYGVFLPYTPIHY 313 Query: 127 LI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185 L+ + P+ SAN S + I N K ++ + + I+D I+N Sbjct: 314 LLFDFLDFPIVATSANISDEPIIRNSKELI-EKLGSVVDFILDNNRD-------IINACD 365 Query: 186 EKKVRILRP 194 + V+++ Sbjct: 366 DSVVQVVNE 374 >gi|170076835|ref|YP_001733473.1| [NiFe] hydrogenase maturation protein HypF [Synechococcus sp. PCC 7002] gi|169884504|gb|ACA98217.1| [NiFe] hydrogenase maturation protein HypF [Synechococcus sp. PCC 7002] Length = 758 Score = 74.3 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 42/214 (19%), Positives = 78/214 (36%), Gaps = 20/214 (9%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLI 61 T+ + L A +++ G +A+ GL D+RN A+++L K+RP P Sbjct: 192 TNQSPLEAAIQYIRDGKIVALK-----GLGGFQLLVDARNNKAVQQLRGRKQRP-DKPFA 245 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLFWP--GPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 D+ +K D L + F T++L ++ + + Sbjct: 246 VMYPDLPSIKN----DCFLSQLEEAFLTSQASPTVLLQKKKEFNLAENVAPHNPNLGVML 301 Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P L+++ P+ S NRS + + L +I ++ Sbjct: 302 PYTPLHHLLLKSLNFPVIATSGNRSDEPICIDETEALERLKNIADGFLIHNRRILRPVDD 361 Query: 179 TIVNVQCEKKVRILRPGGLEIE--TLKRAISVEL 210 ++V V + + R G E TLKR +S + Sbjct: 362 SVVRVMNNTPIILRRSRGYAPEPLTLKRTLSKNV 395 >gi|22652029|gb|AAN03573.1|AF381045_10 hydrogenase maturation protein HypF [Synechococcus sp. PCC 7002] Length = 766 Score = 74.3 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 42/214 (19%), Positives = 78/214 (36%), Gaps = 20/214 (9%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLI 61 T+ + L A +++ G +A+ GL D+RN A+++L K+RP P Sbjct: 200 TNQSPLEAAIQYIRDGKIVALK-----GLGGFQLLVDARNNKAVQQLRGRKQRP-DKPFA 253 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLFWP--GPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 D+ +K D L + F T++L ++ + + Sbjct: 254 VMYPDLPSIKN----DCFLSQLEEAFLTSQASPTVLLQKKKEFNLAENVAPHNPNLGVML 309 Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P L+++ P+ S NRS + + L +I ++ Sbjct: 310 PYTPLHHLLLKSLNFPVIATSGNRSDEPICIDETEALERLKNIADGFLIHNRRILRPVDD 369 Query: 179 TIVNVQCEKKVRILRPGGLEIE--TLKRAISVEL 210 ++V V + + R G E TLKR +S + Sbjct: 370 SVVRVMNNTPIILRRSRGYAPEPLTLKRTLSKNV 403 >gi|50120190|ref|YP_049357.1| hydrogenase maturation protein [Pectobacterium atrosepticum SCRI1043] gi|49610716|emb|CAG74161.1| hydrogenase maturation protein [Pectobacterium atrosepticum SCRI1043] Length = 767 Score = 74.3 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 41/169 (24%), Positives = 66/169 (39%), Gaps = 27/169 (15%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEI-KKRPAMNPLIC 62 AL+ A L AG +AI G+ D++N A+ RL + K RPA PL Sbjct: 206 EAALQAAVAMLKAGGIVAIK-----GIGGFHLACDAQNDEAV-RLLRLRKHRPA-KPLAV 258 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 V + S + + + A+L P +++D + +L +P Sbjct: 259 MVENFSGLPELTA--------ARLSSPAAPIVLVDKQIIGFLSKDIAPDLNDVGVMLPSN 310 Query: 123 FTKKLI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 + L+ + G PL + S N SG+ + LS + I DG Sbjct: 311 PLQHLLMQDIGRPLVMTSGNLSGRPPALTNEQALSE-----LAGIADGW 354 >gi|294670088|ref|ZP_06735038.1| protein RimN [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308131|gb|EFE49374.1| protein RimN [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 195 Score = 74.3 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 28/55 (50%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 L G IA PTE+ YGL + A+++L +K+RP +I + + ++ Sbjct: 17 LKRGGLIAYPTESCYGLGCLPTHTKALKKLIRLKRRPQHKGMIVIGNKLDRLRPL 71 >gi|291532641|emb|CBL05754.1| [NiFe] hydrogenase maturation protein HypF [Megamonas hypermegale ART12/1] Length = 769 Score = 74.3 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 34/193 (17%), Positives = 71/193 (36%), Gaps = 15/193 (7%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 +++KA E + G +A V G+ D+ N A+ L + K R P Sbjct: 206 ESIKKAHELIKKGAIVA-----VKGIGGYHLVCDAFNEEAVANLRQRKIR-EDKPFAVMA 259 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 +++ +VKK V+ L P+ ++L ++ + + Sbjct: 260 TNLDIVKKICEVNDKEEELLTS-MQAPI-VLLHKAKAYNLASKVAPHNAYLGVMIAYAPI 317 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII-DGGISKIGLESTIVNV 183 L+ + SAN S + + + S + I+ I + ++ ++V V Sbjct: 318 HYLLLNDDDVFVMTSANLSDEPIVYQDEEAKSH-LSTIADYILSHNRIIQTRVDDSVVRV 376 Query: 184 QCEKKVRILRPGG 196 ++++ I R G Sbjct: 377 FNDRQMLIRRSRG 389 >gi|254417261|ref|ZP_05031005.1| (NiFe) hydrogenase maturation protein HypF [Microcoleus chthonoplastes PCC 7420] gi|196175914|gb|EDX70934.1| (NiFe) hydrogenase maturation protein HypF [Microcoleus chthonoplastes PCC 7420] Length = 847 Score = 74.3 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 53/333 (15%), Positives = 110/333 (33%), Gaps = 70/333 (21%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59 + S+ + C L G +AI GL D+ N T +++L K+R P Sbjct: 204 KMDTSDPIDTVCTLLKQGEIVAIK-----GLGGIHLACDATNETTVQQLRSRKQR-YHKP 257 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLV--LDLLSTTDIHPL---------- 107 D+ +++++ +++ L + P P+ L+ + + P Sbjct: 258 FALMARDLEVIEQYCTLNDQEKELFQS-PPAPIVLIDVIPNRANCRDAPWRVSTAKIADS 316 Query: 108 STANLKTACFRVPCGFTKKLI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLI 166 T F +P LI + +P+ + S N S + + + S + K + Sbjct: 317 VAPGQTTLGFMLPYTPLHHLIMQRLDYPIILTSGNLSDEPQCIDNQDA-SLKLGKIADYL 375 Query: 167 IDGGISKIGL--ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPG 224 + + +S + +Q +++++ GG + + + E G Sbjct: 376 LLHNRDIVNRVDDSVVRVIQSKRQLQNFDGGGFSHIRVTKNDNCETRPYR---------G 426 Query: 225 MLKSH-----------YAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKT- 272 + H YAP+ I++ P ++N L + Sbjct: 427 TMARHIHIQTLRRARGYAPKP------INLPPGFEKCPPILAMGSELKNTFCLLRDGQAI 480 Query: 273 -----GKLKEAAF--------NLFNYMKIADDS 292 G L+ AA NL+ + + D Sbjct: 481 LSQHLGDLENAAAFNAYQDTLNLY--LNLFDHK 511 >gi|206900558|ref|YP_002251596.1| [NiFe] hydrogenase maturation protein HypF [Dictyoglomus thermophilum H-6-12] gi|206739661|gb|ACI18719.1| [NiFe] hydrogenase maturation protein HypF [Dictyoglomus thermophilum H-6-12] Length = 742 Score = 74.3 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 85/220 (38%), Gaps = 14/220 (6%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAM 57 I + ++ E+LD G +AI G+ D+ +R+L E KKRP+ Sbjct: 187 IYGEESKDLFKRISEYLDEGKILAIK-----GIGGFHLACDATQDDTVRKLRERKKRPS- 240 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 P + DI +K++ V + K P+ ++L + DI PL Sbjct: 241 KPFALMMKDIETIKEYCFVSEEEEKILKSK-QSPI-VLLRIKDLKDISPLVAPGNNYLGV 298 Query: 118 RVPCGFTKKLI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 +P LI + + PL + S N S + + + + + + K + Sbjct: 299 MLPYAPYHHLIFDHFKKPLIMTSGNLSDEPIVKDNEEAMERLKNIADIFVFHNREIKHRI 358 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDE 216 + ++V V+ ++ I R G + +K I ++ + Sbjct: 359 DDSVVFVENKEVQIIRRARGYAPDPVKIPIKLKPTLALGG 398 >gi|251771013|gb|EES51597.1| putative translation factor (SUA5)-like protein [Leptospirillum ferrodiazotrophum] Length = 208 Score = 74.3 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 38/179 (21%), Positives = 65/179 (36%), Gaps = 15/179 (8%) Query: 17 EFLDAGLPIAIPTETVYGLAVDSR---NPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 ++L G + P E Y L+ +RLY IK RP+ P++ + +V + Sbjct: 21 QWLRQGGVLGFPAEYAYALSEVPLWRAREDG-QRLYRIKGRPSGKPVLYLAGSLRVVARF 79 Query: 74 ASVDPLSLHLAKLFW---PGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGFTKKLIE 129 A++ + F P T +L L A FR+ P ++ + Sbjct: 80 AALPRDPRR--RRFLAEPPEFRTFLLPAAP--LAISLGMAKYGKVAFRIPPDPILRQFLR 135 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188 PL+ S N SGQ + ++DGG S IV++ ++ Sbjct: 136 FLDAPLSGTSLNPSGQP-PLKTPEAIRQVFPDL--ALVDGGFRPGFPVSPIVDLSTAER 191 >gi|206895108|ref|YP_002247264.1| [NiFe] hydrogenase maturation protein HypF [Coprothermobacter proteolyticus DSM 5265] gi|206737725|gb|ACI16803.1| [NiFe] hydrogenase maturation protein HypF [Coprothermobacter proteolyticus DSM 5265] Length = 764 Score = 73.9 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 86/222 (38%), Gaps = 15/222 (6%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 I D + LRK + L G +AI + Y LA D+ N TA+ RL ++K+RP P S Sbjct: 197 IADPD-LRKTVDILKDGKVVAIKSLGGYLLACDALNETAVNRLRKLKRRPQE-PFALM-S 253 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125 + ++ V+ L + P ++L + + F +P Sbjct: 254 TLPNIENFCYVNSAEKDLLES--PAAPIVLLQKKPYGSLPEVVAPGQNYLGFMLPYSPLH 311 Query: 126 KLIETYGHP---LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI-GLESTIV 181 +I Y P L + SAN G++ + + + ++ + + ++ ++V Sbjct: 312 HII-FYHWPEAVLVMTSANLHGEVIY--YEESDLPKLLEMADYVLTHDRAIVTHVDDSVV 368 Query: 182 NVQCEKKVRILRPGGLEIETLK---RAISVELEYCVDETSTP 220 + + I R G +K + L DE +TP Sbjct: 369 QMLSDGPHLIRRSRGYVPLPIKLSNQCKVPILATGGDEKATP 410 >gi|257053408|ref|YP_003131241.1| (NiFe) hydrogenase maturation protein HypF [Halorhabdus utahensis DSM 12940] gi|256692171|gb|ACV12508.1| (NiFe) hydrogenase maturation protein HypF [Halorhabdus utahensis DSM 12940] Length = 766 Score = 73.9 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 45/203 (22%), Positives = 73/203 (35%), Gaps = 18/203 (8%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 +A+ KA + L G +AI G+ D+ +P + L E RP P Sbjct: 204 DDAIAKAGDRLADGELVAIK-----GIGGTHLACDATDPAVVETLRERTGRPE-KPFALM 257 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTT-DIHPLSTANLKTACFRVP-C 121 D+ V+ A + + P+ L+ D + LKT +P Sbjct: 258 APDLEAVESVAQISDTERDALEDTR-RPILLLDGRRENRPDWFDTVSPGLKTVGVMLPYS 316 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII--DGGISKIGLEST 179 G +L E PL + SAN G T+ IL + + I + D I +S Sbjct: 317 GLHHRLFEHIEGPLVMTSANMPGVPMATDRASIL-ADLDGVIDAALVHDREIVMRCDDS- 374 Query: 180 IVNVQCEKKVRILRPGGLEIETL 202 + ++ + R G E+L Sbjct: 375 VARFSGGQRRFVRRSRGWVPESL 397 >gi|206602460|gb|EDZ38941.1| Putative translation factor (SUA5) [Leptospirillum sp. Group II '5-way CG'] Length = 204 Score = 73.9 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 47/196 (23%), Positives = 78/196 (39%), Gaps = 30/196 (15%) Query: 17 EFLDAGLPIAI-----------P----TETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 E L G IA+ P T TV RRL+ IK R P++ Sbjct: 18 EVLREGGVIALSAEYAYALAEAPEWDRT-TV-------FRSEKNRRLFSIKARSPGKPIL 69 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLF-WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 +S+V + A + + WP TLVL +H + N FR+P Sbjct: 70 YLAGSLSIVARFARLPATVRCRRHVSRWPNFRTLVLPARP-LAVHLGMSHNGG-VAFRIP 127 Query: 121 CGFTKKL-IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + +L + G PL+ S N SG + + + I + + +++ G+ G S Sbjct: 128 EERSLRLFLNFLGTPLSGTSLNLSGCPPLRSPEEICRAFPF--LDGVVEAGVLPGGPPSP 185 Query: 180 IVNVQCEKKVRILRPG 195 +++V + R++RPG Sbjct: 186 VIDVTKCPE-RVVRPG 200 >gi|295697076|ref|YP_003590314.1| (NiFe) hydrogenase maturation protein HypF [Bacillus tusciae DSM 2912] gi|295412678|gb|ADG07170.1| (NiFe) hydrogenase maturation protein HypF [Bacillus tusciae DSM 2912] Length = 756 Score = 73.9 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 63/165 (38%), Gaps = 19/165 (11%) Query: 8 DSNALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 D ALR+A L G +A V Y LA D++N A+R L E K+R A P Sbjct: 200 DEAALREAVHLLGRGAIVA-----VKGLGGYHLACDAKNAGAVRALRERKRRGA-KPFAV 253 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 D+++ ++ + P + L P+ L ++ P + +P Sbjct: 254 MAKDLNVARELVDLSPEAEALLTSAM-RPIVLAPARRPLPEVAPDN----GDLGVMLPYT 308 Query: 123 FTKKLIETYGHP--LAIPSANRSGQISITNVKHILSSSICKEIPL 165 L+ +G P L + SANRS + + + + Sbjct: 309 PLHHLLFAFGAPPVLVMTSANRSSEPIVYRDEEA-RERLRGIADA 352 >gi|157165419|ref|YP_001466895.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter concisus 13826] gi|157101532|gb|EAT97227.2| [NiFe] hydrogenase maturation protein HypF [Campylobacter concisus 13826] Length = 741 Score = 73.9 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 66/171 (38%), Gaps = 15/171 (8%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMN 58 M + + A ++A ++ G +AI GL D+ N A+ L K RP+ Sbjct: 194 MLASKNEAAKEAARLINEGKILAIK-----GLGGFHLVCDATNEAAVCELRARKHRPS-K 247 Query: 59 PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 P ++ ++ A + L P+ ++L+ + ++I NL Sbjct: 248 PFALMSKNLQNAREIAQISEAEAKLLTSNL-KPI-VLLEAKNGSNIAKSVAPNLNKLGVM 305 Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 + G L + H + SAN SG++ I + L + + I +D Sbjct: 306 LAFSGIHLLLFDYLEHDIIATSANISGEVVIKDESE-LREKLGEVIDFYLD 355 >gi|238794776|ref|ZP_04638379.1| Carbamoyltransferase hypF [Yersinia intermedia ATCC 29909] gi|238725930|gb|EEQ17481.1| Carbamoyltransferase hypF [Yersinia intermedia ATCC 29909] Length = 761 Score = 73.9 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 63/170 (37%), Gaps = 2/170 (1%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LAVD+ N A+ RL + K+RP+ PL + + + + + L L P + Sbjct: 227 LAVDATNAAAVARLRQRKQRPS-KPLAVMLPHADWLSRCVQSNDSAALLRVLRSPAAPIV 285 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGHPLAIPSANRSGQISITNVKH 153 ++ + + + L +P + L++ G PL + S N G+ + + Sbjct: 286 LVSSRADSPLCAALAPGLPEIGVMLPANPLQHLLLQQVGRPLVMTSGNGRGKPPALSNEQ 345 Query: 154 ILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203 L + ++ + ++V + + R G + + Sbjct: 346 ALGALRDIADHWLLHDRQIVQRADDSLVRLTGSGAEMLRRARGYVPDAFE 395 >gi|330448634|ref|ZP_08312282.1| [NiFe] hydrogenase maturation protein HypF [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492825|dbj|GAA06779.1| [NiFe] hydrogenase maturation protein HypF [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 791 Score = 73.9 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 60/174 (34%), Gaps = 23/174 (13%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 A+ + + + G +AI G+ D+ NP A+ L +K RP+ PL V Sbjct: 217 TAIEQLAQKIKNGDIVAIK-----GIGGFHLACDATNPQAVANLRLLKHRPS-KPLAIMV 270 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS----TTDIHPLSTANLKTACFRVP 120 SD + K+ + + P+ L+ + I N+ P Sbjct: 271 SDAGIAKEVVEGCDVEWQALEAQT-RPIVLMRKRDAQCGQDVKIADDLAPNVPYLGVMQP 329 Query: 121 CGFTKKLI------ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 L+ L + SAN SG T + + S+ I I+D Sbjct: 330 YTPLHYLLFAELEKLGATSALVMTSANLSGMPIATELAQV-SAQFSGSISAILD 382 >gi|254479471|ref|ZP_05092797.1| (NiFe) hydrogenase maturation protein HypF [Carboxydibrachium pacificum DSM 12653] gi|214034594|gb|EEB75342.1| (NiFe) hydrogenase maturation protein HypF [Carboxydibrachium pacificum DSM 12653] Length = 751 Score = 73.6 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 42/240 (17%), Positives = 77/240 (32%), Gaps = 37/240 (15%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICH 63 + ++ + L G +AI G+ ++ + A+ L KKR P Sbjct: 202 DDEIKCVAKALKEGKIVAIK-----GIGGFHLAVNALDDEAVATLRRRKKR-YGKPFAVM 255 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 + D+ VKK+ V P L +VL + +L T +P Sbjct: 256 MRDVEEVKKYCIVSPEEERLL---LSQRRPIVLLKKKGEKLAKGIADDLDTLGVMLPYAP 312 Query: 124 TKKLI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 L+ E P+ + S N S + + + L + + + IVN Sbjct: 313 IHYLLMEEIDFPIVMTSGNVSEEPICKDNEEAL-EKLKDIADVFLLNNRD-------IVN 364 Query: 183 VQCEKKVRILRPGGLEIETLKRAISV---ELEYCVDETSTPQSPGMLKS--------HYA 231 + + V G I ++RA + + ++ + G HYA Sbjct: 365 -RIDDSVTSFNAGAERI--IRRARGYAPQPILLKKEVKASILAVGGFYKNTFCMTKGHYA 421 >gi|20806660|ref|NP_621831.1| hydrogenase maturation factor [Thermoanaerobacter tengcongensis MB4] gi|20515109|gb|AAM23435.1| Hydrogenase maturation factor [Thermoanaerobacter tengcongensis MB4] Length = 751 Score = 73.6 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 42/240 (17%), Positives = 77/240 (32%), Gaps = 37/240 (15%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICH 63 + ++ + L G +AI G+ ++ + A+ L KKR P Sbjct: 202 DDEIKCVAKALKEGKIVAIK-----GIGGFHLAVNALDDEAVATLRRRKKR-YGKPFAVM 255 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 + D+ VKK+ V P L +VL + +L T +P Sbjct: 256 MRDVEEVKKYCIVSPEEERLL---LSQRRPIVLLKKKGEKLAKGIADDLDTLGVMLPYAP 312 Query: 124 TKKLI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 L+ E P+ + S N S + + + L + + + IVN Sbjct: 313 IHYLLMEEIDFPIVMTSGNVSEEPICKDNEEAL-EKLKDIADVFLLNNRD-------IVN 364 Query: 183 VQCEKKVRILRPGGLEIETLKRAISV---ELEYCVDETSTPQSPGMLKS--------HYA 231 + + V G I ++RA + + ++ + G HYA Sbjct: 365 -RIDDSVTSFNAGAERI--IRRARGYAPQPILLKKEVKASILAVGGFYKNTFCMTKGHYA 421 >gi|258545441|ref|ZP_05705675.1| translation factor (SUA5) [Cardiobacterium hominis ATCC 15826] gi|258519303|gb|EEV88162.1| translation factor (SUA5) [Cardiobacterium hominis ATCC 15826] Length = 186 Score = 73.6 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 58/178 (32%), Gaps = 8/178 (4%) Query: 18 FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSDISMVKKHASV 76 L + A PTE VYGL D R P + +K R ++ ++ + Sbjct: 13 LLHSRQVFAYPTEAVYGLGGDPRAPEVFAEILRLKGARTPGQGMLLVAANWAQCADWVDG 72 Query: 77 DPLSL--HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133 +L L L T +L ++ + L A RV ++L Sbjct: 73 LDAALIAKLQALAADRATTFILPAAASVPV-YLRDAASGRIAIRVSQHPLVRQLCTWADS 131 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 PL SAN S + + +P+I G S + +V +R Sbjct: 132 PLISTSANPSAASPARSAAEV--QHYFPALPVIA-GETGGEARPSRLWDVANATALRD 186 >gi|119774810|ref|YP_927550.1| hydrogenase maturation protein HypF [Shewanella amazonensis SB2B] gi|119767310|gb|ABL99880.1| hydrogenase maturation protein HypF [Shewanella amazonensis SB2B] Length = 771 Score = 73.6 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 42/199 (21%), Positives = 70/199 (35%), Gaps = 26/199 (13%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 L + L G AI GL D+ + A+ L K RPA PL V D Sbjct: 207 LDECARLLKQGAIFAIK-----GLGGFHLVCDATHEEAVSSLRTRKVRPA-KPLAVMVKD 260 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLST----------ANLKTAC 116 I+M + A L P+ ++ P T + Sbjct: 261 IAMARSFADGAQEEWQLL-SSRERPIVIMKKAAEQHRAVPKDTQHRELAASVAPGIDRIG 319 Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI- 174 +P L+++ PL SANRSG+ I + + + I+D + Sbjct: 320 LFLPYTPLHALLLDSVDRPLVATSANRSGEPIIIAAVD-IHQKLAGVVDFILDHDRPIVS 378 Query: 175 GLESTIVNVQCEKKVRILR 193 G + ++V C +++++R Sbjct: 379 GCDDSVVQW-CAGQLQVIR 396 >gi|17228189|ref|NP_484737.1| hydrogenase maturation protein [Nostoc sp. PCC 7120] gi|17130039|dbj|BAB72651.1| hydrogenase maturation protein [Nostoc sp. PCC 7120] Length = 785 Score = 73.6 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 69/205 (33%), Gaps = 20/205 (9%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 + + C L G +AI G+ D+ A+ +L + K+R P Sbjct: 205 DDVDAVCTLLQKGEIVAIK-----GIGGFHLACDATQEAAVEKLRQRKRR-YDKPFALMA 258 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLL----STTDIHPLSTANLKTACFRVP 120 DI++++K+ V+ L P ++L+ S+ I T F +P Sbjct: 259 RDINVIEKYCFVNDRERELL--VSPAAPIVLLEKRTEEISSFPIASTVAPGQNTLGFMLP 316 Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LES 178 +++ P+ + S N + + + + + ++ Sbjct: 317 YTPLHHLILKRMNRPIVLTSGNIADEPQCV-ANDEAKEKLSHIADYFLLHNREIVNRVDD 375 Query: 179 TIVNVQCEKKVRILRPGGLEIETLK 203 ++V V K + R G +K Sbjct: 376 SVVRVIDNKIQIMRRARGYAPAPIK 400 >gi|307131784|ref|YP_003883800.1| [NiFe] hydrogenase metallocenter assembly protein HypF [Dickeya dadantii 3937] gi|306529313|gb|ADM99243.1| [NiFe] hydrogenase metallocenter assembly protein HypF [Dickeya dadantii 3937] Length = 770 Score = 73.6 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 38/200 (19%), Positives = 70/200 (35%), Gaps = 12/200 (6%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 +A+ +A L AG + E V GL D+ + A+ RL K RPA PL Sbjct: 210 DDAIMQAAAALCAGQIV----E-VKGLGGFHLACDATDAQAVARLRARKHRPA-KPLAVM 263 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 + + + +S + L + P ++L L + L +P Sbjct: 264 LPGADWLARCSSAAEPTSALRMMQSPAAPIVLLPLRHDGALAAGIAPGLDEVGLMLPANP 323 Query: 124 TKKLIETYG-HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 + L+ PL + S N G+ ++ ++ + ++V Sbjct: 324 LQHLLLAAVARPLVMTSGNAGGKPPALENTQAMAELTGIADLWLLHDRDIVQRADDSVVR 383 Query: 183 VQCEKKVRILRPGGLEIETL 202 +Q E+ + R G + L Sbjct: 384 MQGERAEMLRRARGYVPDAL 403 >gi|255523890|ref|ZP_05390854.1| (NiFe) hydrogenase maturation protein HypF [Clostridium carboxidivorans P7] gi|296185940|ref|ZP_06854345.1| carbamoyltransferase HypF [Clostridium carboxidivorans P7] gi|255512452|gb|EET88728.1| (NiFe) hydrogenase maturation protein HypF [Clostridium carboxidivorans P7] gi|296049208|gb|EFG88637.1| carbamoyltransferase HypF [Clostridium carboxidivorans P7] Length = 778 Score = 73.6 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 40/198 (20%), Positives = 76/198 (38%), Gaps = 21/198 (10%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 A+ A + + G AI G+ D+ N A++RL ++K RPA P + Sbjct: 201 AITYARQVIHDGGIAAIK-----GIGGFHLCCDATNREAVQRLRKLKTRPA-KPFAVMMR 254 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125 D+ V + V + + P+ ++L + + + +P + Sbjct: 255 DMETVGRECEVTKVQKEVLDGH-QKPI-ILLKRKPSGRVCDAVAPDNPKVGVMLPYAPLQ 312 Query: 126 KLIETYG----HP--LAIPSANRSGQISITNVKHILSSSICKEIPLII-DGGISKIGLES 178 LI TY P L + S N SG + ++ + K +I+ + +I + Sbjct: 313 LLIFTYDDDIVMPDCLVMTSGNTSGAPICRDDNDAITE-LSKLCDVILSHNRMIRIRADD 371 Query: 179 TIVNVQCEKKVRILRPGG 196 ++++ EK I R G Sbjct: 372 SVMDFFEEKPYMIRRSRG 389 >gi|238755282|ref|ZP_04616626.1| Carbamoyltransferase hypF [Yersinia ruckeri ATCC 29473] gi|238706516|gb|EEP98889.1| Carbamoyltransferase hypF [Yersinia ruckeri ATCC 29473] Length = 759 Score = 73.6 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 40/203 (19%), Positives = 76/203 (37%), Gaps = 14/203 (6%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 D++A++ A L +G +AI GL D+ TA+ RL E K+RP PL Sbjct: 184 DADAIQSAVAALRSGKIVAIK-----GLGGFHLACDATQQTAVVRLRERKQRP-TKPLAV 237 Query: 63 HVSDISMVKKHASVDPLSLHLAKLF-WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120 + I+ + + S D SL L L P ++ +++ + NL +P Sbjct: 238 MLPSINWLAQ-CSDDHRSLALRDLLQSPAAPIVLTRHRASSPLCAAIAPNLDEVGLMLPF 296 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L++ PL + S N + + + ++ ++ ++ Sbjct: 297 TPLHHLLMQAMQTPLVMTSGNSADCAPVITNNDARRQLVDIADLWLLHNRDIVQRVDDSL 356 Query: 181 VNVQCEKKVRILRPGGLEIETLK 203 V + + R G + L+ Sbjct: 357 VRWSPQGNEVLRRARGYVPDALR 379 >gi|254459018|ref|ZP_05072441.1| (NiFe) hydrogenase maturation protein HypF [Campylobacterales bacterium GD 1] gi|207084289|gb|EDZ61578.1| (NiFe) hydrogenase maturation protein HypF [Campylobacterales bacterium GD 1] Length = 733 Score = 73.6 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 40/198 (20%), Positives = 71/198 (35%), Gaps = 19/198 (9%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 ++ + K EF+ G +A+ GL D+ N I RL K RP PL Sbjct: 197 TDTIEKTAEFIKNGKIVAMK-----GLGGFHIVCDATNDEVIERLRVHKNRP-TKPLAIM 250 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLL-STTDIHPLSTANLKTACFRVP-C 121 D+ VK AS L P+ ++ L + I N+ +P Sbjct: 251 CKDLEQVKLLASASTKEQELL-ASKEAPIVILNKALDAKIKISDKVAPNIDRIGCFLPYT 309 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI-GLESTI 180 L + +P+ SAN + I + + + + ++D + G++ ++ Sbjct: 310 ALHHLLFKQLKNPIVATSANLGSEPIIIKAED-IKEKL-PFVDFVLDFDRDIVNGVDDSL 367 Query: 181 VNVQCEKK--VRILRPGG 196 V V +R+ R Sbjct: 368 VQVVNGNTQMLRLSRGFA 385 >gi|281419472|ref|ZP_06250486.1| (NiFe) hydrogenase maturation protein HypF [Clostridium thermocellum JW20] gi|281406878|gb|EFB37142.1| (NiFe) hydrogenase maturation protein HypF [Clostridium thermocellum JW20] Length = 753 Score = 73.6 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 56/157 (35%), Gaps = 14/157 (8%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59 +T+ +A A +++G IA V G+ + RL E+K R A P Sbjct: 202 ELTEKDAFHAAANIIESGGIIA-----VKGIGGYHFACSPFLEDTVLRLRELKGREA-KP 255 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 + ++K+ V L K +VL L + P + + Sbjct: 256 FAIMFESVDSIRKYCVVSEKEEELLKS---KARPIVLLYLKNNSMAPSACQGSIYCGAFL 312 Query: 120 PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILS 156 P L+ PL + SAN S + I + +LS Sbjct: 313 PYTPLHMLLVKRCGPLIMTSANISDKPIIKDDSEMLS 349 >gi|119484432|ref|ZP_01619049.1| hydrogenase maturation protein [Lyngbya sp. PCC 8106] gi|119457906|gb|EAW39029.1| hydrogenase maturation protein [Lyngbya sp. PCC 8106] Length = 796 Score = 73.6 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 60/173 (34%), Gaps = 24/173 (13%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 + + C L G IAI GL D+ N +++L + K RP PL Sbjct: 211 DEVDAVCTLLQRGQIIAIK-----GLGGFHLACDATNEEIVQKLRQRKHRP-DKPLALM- 263 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDL---------LSTTDIHPLSTANLKTA 115 +DI++++K+ V P L + P+ L+ LS I P Sbjct: 264 ADINIIEKYCFVTPEERELLESSA-APIVLLRRKTSFKQSDISLSKNQIAPSIAPAQNYL 322 Query: 116 CFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 F +P + P+ + SAN S + + S + I Sbjct: 323 GFMLPYTPLHHLALRRLEVPIVLTSANFSDDPQCIDNAEV-RSKLSNVADYFI 374 >gi|125975495|ref|YP_001039405.1| (NiFe) hydrogenase maturation protein HypF [Clostridium thermocellum ATCC 27405] gi|256004217|ref|ZP_05429200.1| (NiFe) hydrogenase maturation protein HypF [Clostridium thermocellum DSM 2360] gi|125715720|gb|ABN54212.1| (NiFe) hydrogenase maturation protein HypF [Clostridium thermocellum ATCC 27405] gi|255991807|gb|EEU01906.1| (NiFe) hydrogenase maturation protein HypF [Clostridium thermocellum DSM 2360] gi|316939615|gb|ADU73649.1| (NiFe) hydrogenase maturation protein HypF [Clostridium thermocellum DSM 1313] Length = 753 Score = 73.2 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 56/157 (35%), Gaps = 14/157 (8%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59 +T+ +A A +++G IA V G+ + RL E+K R A P Sbjct: 202 ELTEKDAFHAAANIIESGGIIA-----VKGIGGYHFACSPFLEDTVLRLRELKGREA-KP 255 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 + ++K+ V L K +VL L + P + + Sbjct: 256 FAIMFESVDSIRKYCVVSEKEEELLKS---KARPIVLLYLKNNSMAPSACQGSIYCGAFL 312 Query: 120 PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILS 156 P L+ PL + SAN S + I + +LS Sbjct: 313 PYTPLHMLLVKRCGPLIMTSANISDKPIIKDDSEMLS 349 >gi|217979850|ref|YP_002363997.1| (NiFe) hydrogenase maturation protein HypF [Methylocella silvestris BL2] gi|217505226|gb|ACK52635.1| (NiFe) hydrogenase maturation protein HypF [Methylocella silvestris BL2] Length = 809 Score = 73.2 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 55/147 (37%), Gaps = 6/147 (4%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 + + A + G +AI Y LA D+ N AI L E K+R P D+ + Sbjct: 216 DDVDAALSLIQKGEIVAIKALGGYQLACDATNAEAIATLRERKRRDR-KPFALMARDLEV 274 Query: 70 VKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127 V+++A+V + L P ++L + + L T F +P L Sbjct: 275 VRRYATVGADEAAALTSREAP---IVLLVAGGSERLPDQIAPGLATLGFMLPSTPLHLLL 331 Query: 128 IETYGHPLAIPSANRSGQISITNVKHI 154 + P+ + S N S + + Sbjct: 332 LRRMTRPVVMTSGNLSDEPQVIGDAEA 358 >gi|53804353|ref|YP_114054.1| [NiFe] hydrogenase maturation protein HypF [Methylococcus capsulatus str. Bath] gi|53758114|gb|AAU92405.1| [NiFe] hydrogenase maturation protein HypF [Methylococcus capsulatus str. Bath] Length = 754 Score = 73.2 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 38/161 (23%), Positives = 59/161 (36%), Gaps = 19/161 (11%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 + AL E L G +A V G+ D+R+ A+ RL E K+RP PL Sbjct: 201 NEPALSGCIEALRQGQVVA-----VKGVGGYHLLCDARSDAAVGRLRERKRRP-DKPLAV 254 Query: 63 HVS-----DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 + + + + A P L P +++ +D+ L L Sbjct: 255 LIPWFEGEGVDWLARLAEPRPDERELLAS--PLRPIVIVQRSVDSDLSGLIAPGLDEIGL 312 Query: 118 RVPCGFTKKLIET-YGHPLAIPSANRSGQISITNVKHILSS 157 P L+ YG PL SAN SG+ +T+ + Sbjct: 313 MYPYSPLHHLLAGDYGAPLVATSANLSGEPVLTDGAEVERQ 353 >gi|320161188|ref|YP_004174412.1| hydrogenase maturation protein HypF [Anaerolinea thermophila UNI-1] gi|319995041|dbj|BAJ63812.1| hydrogenase maturation protein HypF [Anaerolinea thermophila UNI-1] Length = 765 Score = 73.2 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 40/160 (25%), Positives = 61/160 (38%), Gaps = 17/160 (10%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 AL+KA + L G +AI GL D+ N TA++ L KKR + P Sbjct: 204 EEALQKARQLLKEGAILAIK-----GLGGFHLACDAANETAVKTLRNRKKR-SDKPFAVM 257 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 V D+S V+K A D L L P+ ++L I P + ++ T +P Sbjct: 258 VFDLSKVEKIAEFDEEEKALL-LSRQKPI-VLLRKKVDAPIVPEVSPDVNTVGVMLPYTP 315 Query: 124 TKKLIET----YGHPLAIPSANRSGQISITNVKHILSSSI 159 L+ + L + S N S + K + Sbjct: 316 LHYLLLEPEENFPEVLVMTSGNLSEEPIAYEDKEAQERLL 355 >gi|193214863|ref|YP_001996062.1| (NiFe) hydrogenase maturation protein HypF [Chloroherpeton thalassium ATCC 35110] gi|193088340|gb|ACF13615.1| (NiFe) hydrogenase maturation protein HypF [Chloroherpeton thalassium ATCC 35110] Length = 781 Score = 73.2 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 55/170 (32%), Gaps = 18/170 (10%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59 I ++ + + L G +AI GL D+ N A++RL K R P Sbjct: 219 EILTADPISEIVRLLKLGHIVAIK-----GLGGFHLACDAENDEAVKRLRARKHRDE-KP 272 Query: 60 LICHVSDISMVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 L V D+S +K + D + L P ++L + T + Sbjct: 273 LAVMVQDLSSAQKFCQISDEEARALCSAQSP----ILLLKKNGTGLPESIAPGNSQLGIL 328 Query: 119 VPCGFTKKLIETYG-HPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 +P L+ + SAN S + + + + + Sbjct: 329 LPYTPVHHLLMQSQLQAAVMTSANLSDEPIAIDNDEAF-ERLGQIADYFL 377 >gi|75910798|ref|YP_325094.1| hydrogenase maturation protein HypF [Anabaena variabilis ATCC 29413] gi|75704523|gb|ABA24199.1| Hydrogenase maturation protein HypF [Anabaena variabilis ATCC 29413] Length = 786 Score = 73.2 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 33/207 (15%), Positives = 70/207 (33%), Gaps = 24/207 (11%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 + + C L G +AI G+ D+ A+ +L + K+R P Sbjct: 205 DDVDAVCTLLQKGEIVAIK-----GIGGFHLACDATQEAAVEKLRQRKRR-YDKPFALMA 258 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVL------DLLSTTDIHPLSTANLKTACFR 118 DI++++K+ V+ L P ++ + +S+ I F Sbjct: 259 RDITVIEKYCFVNDKERELLDS----PTAPIVLLGKRTEEISSFPIASTVAPGQNILGFM 314 Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-L 176 +P +++ P+ + S N S + + + + + + Sbjct: 315 LPYTPLHHLMLKRMNRPIVLTSGNISDEPQCIDNDE-SKEKLSHIADYFLLHNREIVNRV 373 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLK 203 + ++V V K + R G T+K Sbjct: 374 DDSVVRVIDNKIQIMRRARGYAPATIK 400 >gi|331703156|ref|YP_004399843.1| hypothetical protein MLC_1360 [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328801711|emb|CBW53864.1| Conserved hypothetical protein [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 166 Score = 73.2 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 64/174 (36%), Gaps = 21/174 (12%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + KA E L I +PT+T+YGL+ I R+ ++K PLI +S + + Sbjct: 7 INKAVELLKNNQIIILPTDTIYGLSAIYSLENQI-RVNQVKNADITKPLIVLISSLDQLN 65 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLIET 130 + L+ L P T++ S+ + R V K++I Sbjct: 66 DL-EITDLTDKDY-LLNDEPTTVIFKTKSS------------SIAIRLVKREDVKQIINK 111 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG--GISKIGLESTIVN 182 G P+ S N + +++ K I + D + S+I+ Sbjct: 112 TG-PIISTSVNLHNFKPLIKENDLIN--FNKNIEVFFDTQLNNKPSKIYSSIIK 162 >gi|307150559|ref|YP_003885943.1| (NiFe) hydrogenase maturation protein HypF [Cyanothece sp. PCC 7822] gi|306980787|gb|ADN12668.1| (NiFe) hydrogenase maturation protein HypF [Cyanothece sp. PCC 7822] Length = 786 Score = 73.2 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 37/212 (17%), Positives = 68/212 (32%), Gaps = 24/212 (11%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPA 56 ++++ D AL A + G +AI GL D+RN A+ L + K RP Sbjct: 199 EVLAAGD-RALIAAANAIREGKIVAIK-----GLGGFHLVVDARNSAAVAELRKRKGRP- 251 Query: 57 MNPLICHVSDISMVKKHASVDPLSLHLAKL-----------FWPGPLTLVLDLLSTTDIH 105 P + +VK+ V P L + P + + L+ I Sbjct: 252 DKPFAVMYPGLDLVKEQCQVTPTEEELLQSAECPIVLLKFDLSPNFRSPLTPLMKGGTIS 311 Query: 106 PLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP 164 +P L+ G P+ S N S + + L Sbjct: 312 SEVAPGNPYLGVMLPYTPLHHLLMRELGFPMVATSGNVSDEPICVDELEALQKLNQIADV 371 Query: 165 LIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 ++ ++ ++V +++ + R G Sbjct: 372 FLVHNRPIARPVDDSVVRTMGGREMVLRRARG 403 >gi|146338763|ref|YP_001203811.1| carbamoyl phosphate phosphatase [Bradyrhizobium sp. ORS278] gi|146191569|emb|CAL75574.1| carbamoyl phosphate phosphatase, [NiFe] Hydrogenase maturation protein [Bradyrhizobium sp. ORS278] Length = 752 Score = 73.2 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 40/203 (19%), Positives = 69/203 (33%), Gaps = 23/203 (11%) Query: 14 KACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 + L G +AI GL D+R+ A++RL K+R P ++ + Sbjct: 200 EIAAALAEGKIVAIK-----GLGGYQMLCDARDEPAVQRLRARKQRD-GKPFAVMLASVE 253 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP----CGFT 124 + A +D L + P+ L L S + P L +P Sbjct: 254 AAGEIADLDAAERGLLEQVA-RPIVL---LRSRGRLAPSVAPGLAKIGVMLPVAPLHHLV 309 Query: 125 KKLIETYGH----PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 + +G L SAN SGQ +T+ L ++ I + ++ Sbjct: 310 FDALRAHGGKRNEALVCTSANPSGQPLLTDNDEALIDLAGIADLIVTHDRDIVIRADDSV 369 Query: 181 VNVQCEKKVRILRPGGLEIETLK 203 V + + I R G E ++ Sbjct: 370 VAMMADSPRFIRRARGYVPEPIR 392 >gi|47459206|ref|YP_016068.1| putative translation factor [Mycoplasma mobile 163K] gi|47458535|gb|AAT27857.1| putative translation factor [Mycoplasma mobile 163K] Length = 162 Score = 73.2 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 39/163 (23%), Positives = 68/163 (41%), Gaps = 23/163 (14%) Query: 29 TETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFW 88 T+TV G+ + + LYE+K RP + V I +K + + A + W Sbjct: 22 TDTVTGIGISIHHENP-NLLYELKNRPKNKKIAIVVGSIEQARKMPFWNEKAEAFANILW 80 Query: 89 PGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQIS 147 PG +TL+++ R+P C + I G P + SAN+SG+ Sbjct: 81 PGAVTLIVNDQ----------------AIRMPNCKKLQDFIIDEG-PFFLTSANKSGEDP 123 Query: 148 ITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 I + I E+ I + G S I++++ +K++R Sbjct: 124 IEINN---AQKIFPEVTKIYNFCKGN-GKSSIIIDIETKKRLR 162 >gi|288575006|ref|ZP_06393363.1| (NiFe) hydrogenase maturation protein HypF [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570747|gb|EFC92304.1| (NiFe) hydrogenase maturation protein HypF [Dethiosulfovibrio peptidovorans DSM 11002] Length = 753 Score = 72.8 bits (178), Expect = 6e-11, Method: Composition-based stats. Identities = 39/220 (17%), Positives = 76/220 (34%), Gaps = 18/220 (8%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 + + + E+L AG +AI GL D T + L K RP PL Sbjct: 202 EDGIGRCREYLKAGKVVAIK-----GLGGFHLACDPFEDTPVSTLRHRKGRP-DKPLAIM 255 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 + ++ A + L K P +VL T + + +P Sbjct: 256 AESLESAREIALISEEEARLLKSSR-RP--IVLCEKKTGSVAESVAPGQNSVGIMLPYTP 312 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI-GLESTIVN 182 LI L + SAN + I++ + LS + + ++ ++V Sbjct: 313 LHHLILEGMRALVMTSANPTDSPLISDNEEALS-RLAHVADGFLMHNRDICMKVDDSLVA 371 Query: 183 VQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQS 222 + ++ V + R G + +S+ + + + + +S Sbjct: 372 LSGDRTVMLRRGRGYVPNPID--LSISMPHILAAGAEMKS 409 >gi|301156417|emb|CBW15888.1| carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases [Haemophilus parainfluenzae T3T1] Length = 755 Score = 72.8 bits (178), Expect = 6e-11, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 60/168 (35%), Gaps = 18/168 (10%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLI 61 T AL++ L G +A V GL D+ N + L + K RP PL Sbjct: 200 THETALKQTALLLQQGHIVA-----VKGLGGFHLACDANNQKTVDLLRQRKYRP-TKPLA 253 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 V D+ ++ + + L P ++L +I NL+ +P Sbjct: 254 IMVPDLQFLQDLS--SQETELLTSSAAP---IVLLAKHKVPNIADNIAPNLQEIGVMLPS 308 Query: 122 GFTKKLI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 + L+ PL + SAN SGQ + +H + + + Sbjct: 309 NPLQHLLLRAVNRPLVMTSANASGQPPVLKNEHAV-EQLANLADFYLC 355 >gi|166368905|ref|YP_001661178.1| putative hydrogenase expression/formation protein [Microcystis aeruginosa NIES-843] gi|166091278|dbj|BAG05986.1| putative hydrogenase expression/formation protein [Microcystis aeruginosa NIES-843] Length = 754 Score = 72.8 bits (178), Expect = 6e-11, Method: Composition-based stats. Identities = 55/312 (17%), Positives = 102/312 (32%), Gaps = 54/312 (17%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAM 57 +++ D + A ++ G IAI GL D+RN A+++L + K+R Sbjct: 202 VLAEKDQALIATA-RAIEQGKIIAIK-----GLGGFHLVVDARNTEAVQKLRQRKQR-LD 254 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 P ++ +VKKH V L L + P +VL + + Sbjct: 255 KPFAVMYPNLELVKKHGYVSSLESQLLQS--PAA-AIVLIKQRKNYLSAAVSPGNPYLGV 311 Query: 118 RVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 +P L+ G P+ S N + + K L + Sbjct: 312 MLPYTPLHHLLLAELGFPIVATSGNLADEPICIEEKEAL-EKLG---------------- 354 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQV 236 TI ++ I+RP ++ ++ + ++ G YAP V Sbjct: 355 --TIADLFLVHNRPIVRP--VDDSIIREMAGKAMILR-------RARG-----YAP-FPV 397 Query: 237 RLRAIHVNPREALIRFGN--VPIKNIENAIISLNLSKTGKLKEAAF--NLFNYMKIADDS 292 ++ P A+ + V I IS ++ + N+ + +K + Sbjct: 398 KVNEGDFPPILAVGSYFKNTVAIYQKNQVFISQHIGDLDTVNAVNHFENILDSLKKLYEF 457 Query: 293 GASSIAFSSIPN 304 IA + P Sbjct: 458 APEVIACDAHPE 469 >gi|315453456|ref|YP_004073726.1| transcriptional regulatory protein hypF [Helicobacter felis ATCC 49179] gi|315132508|emb|CBY83136.1| transcriptional regulatory protein hypF [Helicobacter felis ATCC 49179] Length = 741 Score = 72.8 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 44/197 (22%), Positives = 77/197 (39%), Gaps = 22/197 (11%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPL 60 I + L+ + L G +AI G+ D+RN +R+ EIK RP PL Sbjct: 189 INTTTPLQACLQTLQEGGVVAIK-----GIGGFALMGDARNIEVTQRIREIKTRP-FKPL 242 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 V D+ M + A ++ L + + +L + ++PL NL T +P Sbjct: 243 SVMVRDLDMARDLAYLNSLEEQILQA----SSAPILIARAKVSLNPLIAPNLDTLGLCLP 298 Query: 121 CGFTKKLI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LES 178 LI PL SAN ++ + ++ + I+D + + +E Sbjct: 299 YTPLHHLIARALNIPLIFTSANHKSAPIFHTLEQV--RALG--VEGILDHARAIVHPIED 354 Query: 179 TIVNVQCEKKVRILRPG 195 ++V V ++R G Sbjct: 355 SVVRASG-GAVGVVRLG 370 >gi|294791612|ref|ZP_06756760.1| hypothetical protein gi|294456842|gb|EFG25204.1| [NiFe] hydrogenase maturation protein HypF [Veillonella sp. 6_1_27] Length = 759 Score = 72.8 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 41/190 (21%), Positives = 73/190 (38%), Gaps = 9/190 (4%) Query: 17 EFLDAGLPIAIPTETV--YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 E ++ G IAI + V Y L D+RN A++RL + K RP PL V + M + Sbjct: 215 ELINEGNIIAI--KGVGGYHLVCDARNDAAVQRLRKRKNRP-HKPLAIMVGSLDMAIELV 271 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLL-STTDIHPLSTANLKTACFRVPCGFTKKLIETYGH 133 ++ + L + P+ L+ S+ + P + +P +++ Sbjct: 272 HINDVELDVLTG-MERPIVLLERNHNSSVRLSPHVAPDNHMLGVMLPYSPMHEVLLPSDA 330 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIVNVQCEKKVRIL 192 + S NRSG + N + + + + L+ ++V V K I Sbjct: 331 AWVMTSGNRSGDSVLYNDDQAFNE-LGEVADYFLVHNREIYAPLDDSVVVVINNKPRFIR 389 Query: 193 RPGGLEIETL 202 R G E + Sbjct: 390 RSRGYVPEPI 399 >gi|282848977|ref|ZP_06258366.1| carbamoyltransferase HypF [Veillonella parvula ATCC 17745] gi|282581252|gb|EFB86646.1| carbamoyltransferase HypF [Veillonella parvula ATCC 17745] Length = 759 Score = 72.8 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 42/190 (22%), Positives = 74/190 (38%), Gaps = 9/190 (4%) Query: 17 EFLDAGLPIAIPTETV--YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 E ++ G IAI + V Y L D+RN A++RL + K RP PL V + M + A Sbjct: 215 ELINEGNIIAI--KGVGGYHLVCDARNDAAVQRLRKRKNRP-HKPLAIMVGSLDMAIELA 271 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLL-STTDIHPLSTANLKTACFRVPCGFTKKLIETYGH 133 ++ + L + P+ L+ S+ + P + +P +++ Sbjct: 272 HINDVELDVLTG-MERPIVLLERNHNSSVRLSPHVAPDNHMLGVMLPYSPMHEVLLPSDA 330 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIVNVQCEKKVRIL 192 + S NRSG + N + + + + L+ ++V V K I Sbjct: 331 AWIMTSGNRSGDSVLYNDDQAFNE-LGEVADYFLVHNREIYAPLDDSVVVVINNKPRFIR 389 Query: 193 RPGGLEIETL 202 R G E + Sbjct: 390 RSRGYVPEPI 399 >gi|307825739|ref|ZP_07655956.1| (NiFe) hydrogenase maturation protein HypF [Methylobacter tundripaludum SV96] gi|307733316|gb|EFO04176.1| (NiFe) hydrogenase maturation protein HypF [Methylobacter tundripaludum SV96] Length = 770 Score = 72.8 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 39/202 (19%), Positives = 74/202 (36%), Gaps = 20/202 (9%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 ++ L+ A E + G IAI GL ++ + A+ RL E K+R PL Sbjct: 199 ADPLKHAAELIRQGYIIAIK-----GLGGFHLACNATDADAVNRLRERKRR-YAKPLALM 252 Query: 64 VSDISMVKKHASVD-PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 +D + ++A +D + L P +VL + P + F +P Sbjct: 253 -ADAITITRYALMDEEETRALHDKAAP----IVLLTAQGETLAPGVAPDDDKLGFMLPYT 307 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTI 180 L++ P+ + S N S + T+ + ++ + + L+ ++ Sbjct: 308 PLHTLLLQELDEPIVLTSGNISDEPQCTDNDEA-REKLTGIADYLLLHDRAIVNRLDDSV 366 Query: 181 VNVQCEKKVRILRPGGLEIETL 202 + K + R G E L Sbjct: 367 ARLMDGKIRVLRRARGYSPEAL 388 >gi|300855485|ref|YP_003780469.1| putative hydrogenase maturation protein HypF [Clostridium ljungdahlii DSM 13528] gi|300435600|gb|ADK15367.1| predicted hydrogenase maturation protein HypF [Clostridium ljungdahlii DSM 13528] Length = 802 Score = 72.8 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 40/199 (20%), Positives = 76/199 (38%), Gaps = 21/199 (10%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 A+ + + G AI G+ D+ N A+ RL ++K RPA P + Sbjct: 203 TAITYTRQVIHDGGIAAIK-----GIGGFHLCCDATNQEAVERLRKLKTRPA-KPFAVMM 256 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 D+ V++ V + + P+ ++L + + T + +P Sbjct: 257 RDMETVERECEVTKVQKEVLDGH-QKPI-ILLKRKQSKMVCDAVTPDNPKIGVMLPYAPV 314 Query: 125 KKLIETYG----HP--LAIPSANRSGQISITNVKHILSSSICKEIPLII-DGGISKIGLE 177 + LI TY P L + S N SG + ++ + K +I+ + +I + Sbjct: 315 QLLIFTYDDDIVMPDCLVMTSGNTSGAPICRDDNDAITE-LSKMCDVILSHNRMIRIRAD 373 Query: 178 STIVNVQCEKKVRILRPGG 196 ++++ EK I R G Sbjct: 374 DSVMDFFEEKPYMIRRSRG 392 >gi|330939565|gb|EGH42884.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. pisi str. 1704B] Length = 119 Score = 72.8 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 6/113 (5%) Query: 86 LFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRS 143 PGP T +L+ +T ++ L +T RVP + L+E G PL S Sbjct: 1 AHTPGPYTFILN--ATREVPRLVLHPKRRTIGLRVPSHPIAQALLEQLGEPLMSVSLIMP 58 Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 G + + + + ++ LIIDGGI I ST++N+ E + +I+R G Sbjct: 59 GDSVPLSDPYEMRQILEHQVDLIIDGGIGGIS-ASTVINL-AEGEPQIVRVGC 109 >gi|170290726|ref|YP_001737542.1| hydrogenase maturation factor [Candidatus Korarchaeum cryptofilum OPF8] gi|170174806|gb|ACB07859.1| Hydrogenase maturation factor [Candidatus Korarchaeum cryptofilum OPF8] Length = 770 Score = 72.8 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 36/199 (18%), Positives = 74/199 (37%), Gaps = 20/199 (10%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59 + + +R A LD G +AI GL + + +R+L E K+RP+ P Sbjct: 202 KVESEDPVRDAARLLDEGKILAIR-----GLGGYHIACLATDDDVVRKLRERKRRPS-KP 255 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 ++ + +++A V ++ +L P ++ + S I L L + Sbjct: 256 FALMALNVEVAERYAVVSEMARNLLTS----PERPIVLMPSKEGISELVAPGLDLIGIML 311 Query: 120 P-CGFTKKLIETY-GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-L 176 P L+ L + S N + T+V + + + + + Sbjct: 312 PYTALHHMLLSEVRDKILIMTSGNEHNKPMCTSV-ECARERLSPIVDYFLHHNREIVNRV 370 Query: 177 ESTIVNVQCEKKVRILRPG 195 + ++V + +V +LR G Sbjct: 371 DDSVVRLTGS-RVTMLRRG 388 >gi|157370663|ref|YP_001478652.1| (NiFe) hydrogenase maturation protein HypF [Serratia proteamaculans 568] gi|157322427|gb|ABV41524.1| (NiFe) hydrogenase maturation protein HypF [Serratia proteamaculans 568] Length = 765 Score = 72.8 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 49/127 (38%), Gaps = 2/127 (1%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+ N A+ RL K+RP PL + D + + S L+ A L P + Sbjct: 227 LACDATNTQAVERLRLRKRRP-GKPLAVMLPDAGWLVRCVSGVSLAQLQALLTSPAAPVV 285 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI-ETYGHPLAIPSANRSGQISITNVKH 153 ++ + + L +P + L+ + PL + S N +G+ + Sbjct: 286 LVPQSPYSPLSAAVAPGLDEVGLMLPANPIQHLLMQAIQRPLVMTSGNAAGRAPALTNEQ 345 Query: 154 ILSSSIC 160 L+ + Sbjct: 346 ALADLVD 352 >gi|7543926|emb|CAB87244.1| SUA5 protein [Candida albicans] Length = 51 Score = 72.4 bits (177), Expect = 8e-11, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%) Query: 279 AFNLFNYMKIADDSG-ASSIAFSSIPNHGLGIAINNRLERAA 319 + NLF Y++ D+ I I G+A+ NRL +AA Sbjct: 1 SHNLFKYLREVDEEDKVELIFVEGIDETNEGLAVMNRLSKAA 42 >gi|300785674|ref|YP_003765965.1| hydrogenase maturation protein HypF [Amycolatopsis mediterranei U32] gi|299795188|gb|ADJ45563.1| hydrogenase maturation protein HypF [Amycolatopsis mediterranei U32] Length = 718 Score = 72.4 bits (177), Expect = 8e-11, Method: Composition-based stats. Identities = 37/200 (18%), Positives = 68/200 (34%), Gaps = 20/200 (10%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICHV 64 + L E L G +A V GL +R+ A RRL + K R P V Sbjct: 193 DPLPATVEALRDGAIVA-----VKGLGGYHLAVGARHEEAARRLRQRKHR-EDKPFAVMV 246 Query: 65 SDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 +D++ ++ A V P + L P ++ L D+ + +P Sbjct: 247 ADLAQARELADVGPAAEEALGSRRRP-----IVLLPKKADLAAAVAPGNRRIGLMLPYTP 301 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII-DGGISKIGLESTIVN 182 L+ P+ + SAN S + + + + + + + + ++V Sbjct: 302 LHHLLLERTGPIVLTSANVSDEPIVHRDEDL--GRLEGIADAFLTHDRPIHVRTDDSVVR 359 Query: 183 VQCEKKVRILRPGGLEIETL 202 + K R G E + Sbjct: 360 IVGTKPQLQRRSRGYAPEPV 379 >gi|78486374|ref|YP_392299.1| (NiFe) hydrogenase maturation protein HypF [Thiomicrospira crunogena XCL-2] gi|78364660|gb|ABB42625.1| (NiFe) hydrogenase maturation protein HypF [Thiomicrospira crunogena XCL-2] Length = 775 Score = 72.4 bits (177), Expect = 9e-11, Method: Composition-based stats. Identities = 41/199 (20%), Positives = 73/199 (36%), Gaps = 23/199 (11%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 +A+++ + L +A G+ D+ + + RL + K R A PL Sbjct: 214 EDAIQQIAQRLKTSGLVAFK-----GVGGFHLLCDATDSETVTRLRQKKHR-ATKPLAVL 267 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 +++ M ++ A + P + L P+ LV T + N+ + Sbjct: 268 CANLEMAQQLAHLAPHEIELLTSE-VKPIVLVEKRSDTA-LCDAIAPNINQLGVFLAYTP 325 Query: 124 TKKLIETY-GHPLAIPSANRSGQISITNVKHILSSSICK----EIPLIIDGGISKIGLES 178 L+ Y PL SAN SG+ + V + +C + ++D + S Sbjct: 326 LHHLLFQYIDFPLVATSANLSGEPILYEVSRVF-EKLCHPDRALVEAVLDFDREIVN-PS 383 Query: 179 --TIVNVQCEKKVRILRPG 195 +IV K ILR G Sbjct: 384 DDSIVQ-SINGKPMILRLG 401 >gi|90426026|ref|YP_534396.1| (NiFe) hydrogenase maturation protein HypF [Rhodopseudomonas palustris BisB18] gi|90108040|gb|ABD90077.1| (NiFe) hydrogenase maturation protein HypF [Rhodopseudomonas palustris BisB18] Length = 785 Score = 72.4 bits (177), Expect = 9e-11, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 54/158 (34%), Gaps = 14/158 (8%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59 + + L A + L G +A+ GL D+ + A+ L K+RPA P Sbjct: 210 RVAADDPLTAAVDALRQGKILALK-----GLGGFHLACDAGSEAAVDALRARKRRPA-KP 263 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 +D+ +++ D L P ++L + N F + Sbjct: 264 FALMAADLEAIRRFCRADAQEAALL--LSPAAPIVLLPWRHHEGLAAAVAPNQSLLGFML 321 Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILS 156 P L+ +G L + S N SG+ + + Sbjct: 322 PTTPLHHLLLNEFGGALVMTSGNVSGEPQVIDNADAQR 359 >gi|269104829|ref|ZP_06157525.1| [NiFe] hydrogenase metallocenter assembly protein HypF [Photobacterium damselae subsp. damselae CIP 102761] gi|268161469|gb|EEZ39966.1| [NiFe] hydrogenase metallocenter assembly protein HypF [Photobacterium damselae subsp. damselae CIP 102761] Length = 786 Score = 72.4 bits (177), Expect = 9e-11, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 63/173 (36%), Gaps = 24/173 (13%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 A+ + + AG +A+ GL D+ + A+ RL + K RP PL Sbjct: 206 EQAIESLAKQILAGGVVALK-----GLGGFHLICDASDNVAVERLRQYKHRP-KKPLAIM 259 Query: 64 VSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 V +S + A D L + P ++L + + P N+ +P Sbjct: 260 VQSLSDARVFAQGCDKEWQTLDEQKRP---IVLLKKNRESILAPNLAPNVPYLGIMLPYT 316 Query: 123 FTKKLIET--------YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 L+ H L + SANRSG T + ++ + E+ I+ Sbjct: 317 PLHFLLFAKLAELKPHTPHALVMTSANRSGLPIATCFEEVI-AQFGTELDGIL 368 >gi|289578795|ref|YP_003477422.1| (NiFe) hydrogenase maturation protein HypF [Thermoanaerobacter italicus Ab9] gi|289528508|gb|ADD02860.1| (NiFe) hydrogenase maturation protein HypF [Thermoanaerobacter italicus Ab9] Length = 751 Score = 72.4 bits (177), Expect = 9e-11, Method: Composition-based stats. Identities = 42/240 (17%), Positives = 73/240 (30%), Gaps = 37/240 (15%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICH 63 + ++ A L G +AI G+ ++ + A+ L K+R P Sbjct: 202 EDEIKCAVAALKKGKIVAIK-----GIGGFHLAVNALDEKAVSNLRIRKER-YGKPFAVM 255 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 + DI V+++ V L +VL + L T +P Sbjct: 256 MKDIKQVEEYCIVGEEEKKLL---LSQRRPIVLLKKKGEKLAKGVADGLDTLGVMLPYAP 312 Query: 124 TKKLI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 L+ E P+ + S N S + + K L + + + IVN Sbjct: 313 IHYLLMEEINFPIVMTSGNVSEEPLCKDNKEAL-EKLKDIADVFLLNNRD-------IVN 364 Query: 183 VQCEKKVRILRPGGLEIETLKRAISV---ELEYCVDETSTPQSPGMLKS--------HYA 231 + + V G I ++RA + D + G HYA Sbjct: 365 -RIDDSVTSFNGGAERI--IRRARGYAPQPILLKKDAKVNVLAVGGFYKNTFCLTKGHYA 421 >gi|290474488|ref|YP_003467368.1| hypothetical protein XBJ1_1450 [Xenorhabdus bovienii SS-2004] gi|289173801|emb|CBJ80583.1| conserved hypothetical protein [Xenorhabdus bovienii SS-2004] Length = 259 Score = 72.4 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 40/174 (22%), Positives = 64/174 (36%), Gaps = 18/174 (10%) Query: 13 RKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 ++A E L + G I PT+ Y + + + R +E K+R P + + +K Sbjct: 14 QEAVEILSNEGGMIVCPTKVGYIIMTS--DAQGLERKFEAKQRNRNKPGVVLCGSLEQLK 71 Query: 72 KHASVDPLSLHLAKLFWPGP--LTLVLDLL-------STTDIHPLSTANLKTACFRV--- 119 + A ++P L + W L +L L T+CF + Sbjct: 72 ELAQLNPEIEELYQKHWDADVLLGCILPWKEDAVARIPDDGSKALMMDGRGTSCFVIKFG 131 Query: 120 -PCGFTKKLI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171 P K + E YG SAN SG+ + V + I + LIID Sbjct: 132 KPGEILAKALWENYGKFSFASSANPSGKGNRGLV-ECIGERIEERADLIIDANH 184 >gi|218440604|ref|YP_002378933.1| (NiFe) hydrogenase maturation protein HypF [Cyanothece sp. PCC 7424] gi|218173332|gb|ACK72065.1| (NiFe) hydrogenase maturation protein HypF [Cyanothece sp. PCC 7424] Length = 780 Score = 72.4 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 44/217 (20%), Positives = 77/217 (35%), Gaps = 29/217 (13%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPA 56 QI+ +S + A + G +AI GL D+RN TA++ L + K+RP Sbjct: 199 QILETHESALMATA-TAIREGKIVAIK-----GLGGFHLVVDARNTTAVQELRKRKQRP- 251 Query: 57 MNPLICHVSDISMVKKHASVDPLSLHLAK-LFWP------------GPLTLVL---DLLS 100 P ++++K+H V P L P PLT + ++ Sbjct: 252 DKPFAVMYPSLNLLKEHCLVTPTEEALLNSAECPIVLLKVLSSNFRSPLTPLYKGGNIRK 311 Query: 101 TTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSI 159 +I P N +P L+ G P+ S N S + + L Sbjct: 312 EGEISPAVAPNNPYLGVMLPYTPLHHLLLAELGFPIVATSGNISDEPICIDELEALQKLN 371 Query: 160 CKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 +I ++ +IV + +++ + R G Sbjct: 372 QIADLFLIHNRPIFRPVDDSIVRMMGGREMVMRRARG 408 >gi|288550332|ref|ZP_05970011.2| [NiFe] hydrogenase maturation protein HypF [Enterobacter cancerogenus ATCC 35316] gi|288315486|gb|EFC54424.1| [NiFe] hydrogenase maturation protein HypF [Enterobacter cancerogenus ATCC 35316] Length = 748 Score = 72.0 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 39/165 (23%), Positives = 55/165 (33%), Gaps = 21/165 (12%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 AL A E L G +AI GL D+R+P AI L K+RPA PL Sbjct: 197 EAALSAAVEMLKNGGIVAIK-----GLGGFHLACDARHPQAIATLRLRKRRPA-KPLAVM 250 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 + P S+ P+ LV D+ L T +P Sbjct: 251 PPQADGL-------PDSIQTLLHSPAAPIVLV-PASWLPDLPDGIAPGLSTIGVMLPANP 302 Query: 124 TKKLIET-YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 + L+ PL + S N SG+ + L + + Sbjct: 303 LQHLLMMDCQRPLVMTSGNLSGRPPAMTNQQAL-DELGDIADGFL 346 >gi|220905911|ref|YP_002481222.1| (NiFe) hydrogenase maturation protein HypF [Cyanothece sp. PCC 7425] gi|219862522|gb|ACL42861.1| (NiFe) hydrogenase maturation protein HypF [Cyanothece sp. PCC 7425] Length = 818 Score = 72.0 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 60/167 (35%), Gaps = 17/167 (10%) Query: 10 NALRKACEFLDAGLPIAIPTETVYG-----LAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 + + C L G +AI G LA D+ + TA++ L + K R P Sbjct: 220 DDVDAVCTLLQRGEIVAIK-----GMGGFHLACDATHETAVQTLRQRKHRD-HKPFALMA 273 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTT---DIHPLSTANLKTACFRVP- 120 D+ +++++ V+P L + P+ L+ + +I + T F +P Sbjct: 274 RDLEIIERYCWVNPQERELLESSA-APIVLLSKKAAQAQKWEIAHAVAPDRNTLGFMLPY 332 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 +++ P+ + S N S Q + + + Sbjct: 333 TPLHHLILKRMNRPIVLTSGNLSDQPQCIDNNEA-HQKLAGIADYFL 378 >gi|306817445|ref|ZP_07451190.1| hydrogenase maturation protein HypF [Mobiluncus mulieris ATCC 35239] gi|307700491|ref|ZP_07637527.1| carbamoyltransferase HypF [Mobiluncus mulieris FB024-16] gi|304649886|gb|EFM47166.1| hydrogenase maturation protein HypF [Mobiluncus mulieris ATCC 35239] gi|307614298|gb|EFN93531.1| carbamoyltransferase HypF [Mobiluncus mulieris FB024-16] Length = 872 Score = 72.0 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 33/143 (23%), Positives = 50/143 (34%), Gaps = 12/143 (8%) Query: 20 DAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 +G +A V GL D+ N TA+ RL K R PL V+D + + Sbjct: 243 RSGKIVA-----VKGLGGFHLLVDATNETAVSRLRRRKHRD-GKPLAVMVADFAAARALV 296 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGH 133 +D +A+L +VL + + I P L + L+E G Sbjct: 297 DIDTPENPIAQLLLSPAHPIVLAVRNGAAIAPSVAPGLDNLGVMLAYTPLHLLLLERVGR 356 Query: 134 PLAIPSANRSGQISITNVKHILS 156 P+ S N S + L Sbjct: 357 PVVATSGNLSSEPLCYTNADALR 379 >gi|119944969|ref|YP_942649.1| (NiFe) hydrogenase maturation protein HypF [Psychromonas ingrahamii 37] gi|119863573|gb|ABM03050.1| (NiFe) hydrogenase maturation protein HypF [Psychromonas ingrahamii 37] Length = 762 Score = 72.0 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 45/195 (23%), Positives = 71/195 (36%), Gaps = 15/195 (7%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGL-----AVDSRNPTAIRRLYEIKKRPAMNPLICH 63 AL A L AG +A V GL VD+ N A+ RL K+RP P Sbjct: 201 EAALTLAINALQAGKILA-----VKGLTGFHIMVDACNHQAVLRLRARKQRPE-KPFALM 254 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CG 122 +SMVK + L P+ L+ + S + P N + Sbjct: 255 YPQLSMVKSDCLLGE-QEKLLLCSAIAPIVLLENKHSNLSLSPAIAPNNPYLGVMLAYTP 313 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI-GLESTIV 181 + + PL + SANRSG+ + + L + + + + GL+ +IV Sbjct: 314 LHQLICRAINKPLVVTSANRSGEPVCCDNEQAL-EQLSQLVDGFVMHDREIYQGLDDSIV 372 Query: 182 NVQCEKKVRILRPGG 196 + + + R G Sbjct: 373 KFVNHEPMLLRRARG 387 >gi|167624190|ref|YP_001674484.1| (NiFe) hydrogenase maturation protein HypF [Shewanella halifaxensis HAW-EB4] gi|167354212|gb|ABZ76825.1| (NiFe) hydrogenase maturation protein HypF [Shewanella halifaxensis HAW-EB4] Length = 795 Score = 72.0 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 37/169 (21%), Positives = 63/169 (37%), Gaps = 17/169 (10%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 AL A L G +AI G+ D+ N ++ L + K RPA P Sbjct: 207 ETALEDAINSLIEGKILAIK-----GIGGFHLVCDATNNQSVELLRQRKNRPA-KPFAVM 260 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLST---TDIHPLSTANLKTACFRVP 120 V +I K+ + + + P+TL+ + + + L + +P Sbjct: 261 VENIDAAKRLVTGNTAEWQVLSSA-ERPITLMRKIDAHDVEPSLSDLVAPQIDRLGIFLP 319 Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 + L+ PL + SAN SG+ IT ++ + I I+D Sbjct: 320 YTPLHQLLLNGVKRPLVMTSANLSGEPIIT-DSVAINCKLANVIDNILD 367 >gi|227876486|ref|ZP_03994598.1| hydrogenase maturation protein [Mobiluncus mulieris ATCC 35243] gi|269976053|ref|ZP_06183057.1| [NiFe] hydrogenase maturation protein HypF [Mobiluncus mulieris 28-1] gi|227843027|gb|EEJ53224.1| hydrogenase maturation protein [Mobiluncus mulieris ATCC 35243] gi|269935881|gb|EEZ92411.1| [NiFe] hydrogenase maturation protein HypF [Mobiluncus mulieris 28-1] Length = 872 Score = 72.0 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 33/143 (23%), Positives = 49/143 (34%), Gaps = 12/143 (8%) Query: 20 DAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 +G +A V GL D+ N TA+ RL K R PL V+D + + Sbjct: 243 RSGKIVA-----VKGLGGFHLLVDATNETAVSRLRRRKHRD-GKPLAVMVADFAAARALV 296 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGH 133 +D +A+L +VL + I P L + L+E G Sbjct: 297 DIDTPENPIAQLLLSPAHPIVLAVRHGAAIAPSVAPGLDNLGVMLAYTPLHLLLLERVGR 356 Query: 134 PLAIPSANRSGQISITNVKHILS 156 P+ S N S + L Sbjct: 357 PVVATSGNLSSEPLCYTNADALR 379 >gi|322420599|ref|YP_004199822.1| (NiFe) hydrogenase maturation protein HypF [Geobacter sp. M18] gi|320126986|gb|ADW14546.1| (NiFe) hydrogenase maturation protein HypF [Geobacter sp. M18] Length = 758 Score = 72.0 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 45/195 (23%), Positives = 72/195 (36%), Gaps = 18/195 (9%) Query: 10 NALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 + L + + L GL +A V Y LAVD+ N A+ L KKR P Sbjct: 201 DPLEQTLKALGEGLVVA-----VKGVGGYHLAVDACNEAAVALLRRRKKRDE-KPFAMLA 254 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 +D+ V+++A L L P+ L++ L T I L F +P Sbjct: 255 ADLDAVRRYAECSELEGRLLAGV-ERPI-LLMRKLPKTPISELVAPGNGWYGFMLPGNPL 312 Query: 125 KK-LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII--DGGISKIGLESTIV 181 + LI PL + S N S + L + L + D I +S ++ Sbjct: 313 QHLLIRNAEGPLVMTSGNLSDEPIAYRDDEALR-MLSGIADLFLSHDREIHTRTDDS-VI 370 Query: 182 NVQCEKKVRILRPGG 196 + + + + R G Sbjct: 371 RLYRGEPLFLRRSRG 385 >gi|160879881|ref|YP_001558849.1| (NiFe) hydrogenase maturation protein HypF [Clostridium phytofermentans ISDg] gi|160428547|gb|ABX42110.1| (NiFe) hydrogenase maturation protein HypF [Clostridium phytofermentans ISDg] Length = 792 Score = 72.0 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 54/157 (34%), Gaps = 14/157 (8%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59 + + AL +A E + +G +A V G+ A+ L +K R P Sbjct: 234 RLINQQALHQAAEIIKSGGILA-----VKGIGGYHFVCSPFKEEAVVNLRRLKGR-EEKP 287 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 I ++++ +V L +VL + + P + + Sbjct: 288 FAVMFETIDSIREYCNVSEEEEKLL---MTKARPIVLLYMHRDVMAPSTNKGSIYCGTFL 344 Query: 120 PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILS 156 P + L+ PL + S N SG I + +LS Sbjct: 345 PYTPLQILLTRDCGPLIMTSGNISGSPIIREDEKMLS 381 >gi|297545016|ref|YP_003677318.1| (NiFe) hydrogenase maturation protein HypF [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842791|gb|ADH61307.1| (NiFe) hydrogenase maturation protein HypF [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 751 Score = 72.0 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 42/240 (17%), Positives = 73/240 (30%), Gaps = 37/240 (15%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICH 63 + ++ A L G +AI G+ ++ + A+ L K+R P Sbjct: 202 EDEIKCAAAALKKGKIVAIK-----GIGGFHLAVNALDEKAVSSLRIRKER-YGKPFAVM 255 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 + DI V+++ V L +VL + L T +P Sbjct: 256 MKDIKQVEEYCIVGEEEKKLL---LSQRRPIVLLKKKGEKLAKGVADGLDTLGVMLPYAP 312 Query: 124 TKKLI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 L+ E P+ + S N S + + K L + + + IVN Sbjct: 313 IHYLLMEEINFPIVMTSGNVSEEPLCKDNKEAL-EKLKDIADVFLLNNRD-------IVN 364 Query: 183 VQCEKKVRILRPGGLEIETLKRAISV---ELEYCVDETSTPQSPGMLKS--------HYA 231 + + V G I ++RA + D + G HYA Sbjct: 365 -RIDDSVTSFNGGAERI--IRRARGYAPQPILLKKDAKVNVLAVGGFYKNTFCLTKGHYA 421 >gi|219847410|ref|YP_002461843.1| (NiFe) hydrogenase maturation protein HypF [Chloroflexus aggregans DSM 9485] gi|219541669|gb|ACL23407.1| (NiFe) hydrogenase maturation protein HypF [Chloroflexus aggregans DSM 9485] Length = 778 Score = 72.0 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 61/176 (34%), Gaps = 23/176 (13%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 + + + LR A L G +A V Y LA + + A+RRL + K+R A PL Sbjct: 205 LAEPDPLRAAAVALAQGQIVA-----VKGLGGYHLACAADDEAAVRRLRQRKQREA-RPL 258 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 D+++ + +DP++ L P +++ S + P ++T +P Sbjct: 259 ALMTRDLTVAARLCVIDPVAQTLLTG--PAHPIVLMPRRSDAPVAPSVAPGMRTLGVMLP 316 Query: 121 ----CGFTKKLIETYGHP-----LAIPSANRSGQISITNVKHILSSSICKEIPLII 167 P + + S N S + + + + Sbjct: 317 YTPLHHLLLAEYAAVVGPTREAVIVLTSGNLSDEPIAYHDDDA-QQRLGPIADAFL 371 >gi|26553519|ref|NP_757453.1| translation factor [Mycoplasma penetrans HF-2] gi|26453525|dbj|BAC43857.1| predicted translation factor [Mycoplasma penetrans HF-2] Length = 213 Score = 72.0 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 48/190 (25%), Positives = 70/190 (36%), Gaps = 50/190 (26%) Query: 29 TETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI----------CHVSDISMVKKHASVDP 78 T+TV GL PLI + +S + + V+ Sbjct: 59 TDTVSGL------------------LSLNKPLIYKIKKRDKNKKLIRFVSNLDQIPEVNE 100 Query: 79 LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAI 137 LA FWPG LTL+ S +R+P F LI+ G PL Sbjct: 101 TFKKLASKFWPGKLTLIYKKES----------------YRMPDDKFILNLIDKTG-PLYS 143 Query: 138 PSANRSGQISITNVKHILSSSICKEIPLI-IDGGISKIGLESTIVNVQCEKKVRILRPGG 196 SAN SG ITN+ S + +I I+G + STI ++ + R G Sbjct: 144 SSANLSGNPPITNIIDAFESFNKYKSDIIFIEGDYYQNNQPSTIYDIDTN---TLKREGE 200 Query: 197 LEIETLKRAI 206 ++ E +K+ I Sbjct: 201 IKYEWIKKTI 210 >gi|134099619|ref|YP_001105280.1| [NiFe] hydrogenase maturation protein HypF [Saccharopolyspora erythraea NRRL 2338] gi|291005475|ref|ZP_06563448.1| [NiFe] hydrogenase maturation protein HypF [Saccharopolyspora erythraea NRRL 2338] gi|133912242|emb|CAM02355.1| [NiFe] hydrogenase maturation protein HypF [Saccharopolyspora erythraea NRRL 2338] Length = 746 Score = 71.6 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 33/200 (16%), Positives = 61/200 (30%), Gaps = 13/200 (6%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICHV 64 + + +A L G +A V GL D+ + A L + K R P V Sbjct: 196 DPVEEAAAVLARGEVLA-----VKGLGGYHLAVDATDEDAALALRKRKLR-EDKPFAVMV 249 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123 + + ++ ++D L P+ L+ T I P +P Sbjct: 250 ATVDHARELVTLDDTEAELLTSRR-RPIVLLRLRSGTGPIAPAVAPGNPRLGLMLPYTPL 308 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 L+ P+ + S N S + L + + + ++V Sbjct: 309 HHLLLRRCATPIVLTSGNVSDEPIAHQDDDALRRLSGIADAFLTHDRPIHVRTDDSVVRA 368 Query: 184 QCEKKVRILRPGGLEIETLK 203 + + + R G E L Sbjct: 369 FRGRPMLVRRSRGYAPEPLA 388 >gi|118581187|ref|YP_902437.1| (NiFe) hydrogenase maturation protein HypF [Pelobacter propionicus DSM 2379] gi|118503897|gb|ABL00380.1| (NiFe) hydrogenase maturation protein HypF [Pelobacter propionicus DSM 2379] Length = 780 Score = 71.6 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 38/195 (19%), Positives = 62/195 (31%), Gaps = 18/195 (9%) Query: 10 NALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 + L A L G +A V Y LAVD+ N A+ L K+R P Sbjct: 212 DVLLAAVNLLQRGGVLA-----VKGIGGYHLAVDACNEEAVANLRRRKQRDE-KPFAIMA 265 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 D++ + A L P ++L T I L + +P Sbjct: 266 PDLARIDSFARCSETEQRLLGG--PERPIVLLPKREATPIASLVAPDNGYFGVMLPSTPL 323 Query: 125 KKLIETYGH-PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES--TIV 181 L+ L + S N+S + + L + +I + S +I+ Sbjct: 324 HHLLLRNNFIALVMTSGNQSDEPIAYRDSEA-REQLAGIADLFL-AHDREIHVRSDDSII 381 Query: 182 NVQCEKKVRILRPGG 196 V + + R G Sbjct: 382 RVFHGSPLFLRRSRG 396 >gi|225025826|ref|ZP_03715018.1| hypothetical protein EUBHAL_00051 [Eubacterium hallii DSM 3353] gi|224956843|gb|EEG38052.1| hypothetical protein EUBHAL_00051 [Eubacterium hallii DSM 3353] Length = 809 Score = 71.6 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 34/200 (17%), Positives = 73/200 (36%), Gaps = 21/200 (10%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 ++A+R + + G +A V G+ D+ + RL + KKRP M P Sbjct: 206 ADAIRYTRKVISEGGIVA-----VKGIGGFHLCCDAAKEETVARLRQRKKRP-MKPFAVM 259 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 + D+ +V++ +P + P+ ++L + + +P Sbjct: 260 MKDLDVVRRECETEPHLEEILDGH-QKPI-ILLPKKEGGTLCESVAPDNPKIGVMLPYAP 317 Query: 124 TKKLI------ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII-DGGISKIGL 176 + L+ L + SAN SG + + L+ + +I+ ++ Sbjct: 318 VQLLLFDYQDETKVSDCLVMTSANTSGAPICRDDEDALNE-LSGLCDVILSHDRKIRLRA 376 Query: 177 ESTIVNVQCEKKVRILRPGG 196 + T+++ + I R G Sbjct: 377 DDTVMDFYRGEPYMIRRSRG 396 >gi|291523009|emb|CBK81302.1| [NiFe] hydrogenase maturation protein HypF [Coprococcus catus GD/7] Length = 793 Score = 71.6 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 40/200 (20%), Positives = 75/200 (37%), Gaps = 21/200 (10%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 A+ + + +G AI G+ D+ N TA+ RL E+K+RP M P Sbjct: 200 EAITYTRKVIASGGIAAIK-----GIGGFHLCCDATNETAVARLRELKRRP-MKPFAVMA 253 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDL-LSTTDIHPLSTANLKTACFRVPCGF 123 ++S V+K V + + P+ L+ L + + I P +P Sbjct: 254 RNMSAVRKECQVTEVQEEVLDGH-QKPILLLERLDKADSQICPSVAPGNPKIGVMLPYAP 312 Query: 124 TKKLIETYG----HP--LAIPSANRSGQISITNVKHILSSSICKEIPLII-DGGISKIGL 176 + LI Y P L + S N SG + ++ + ++ +I Sbjct: 313 VQLLIFDYDDGIQMPDYLVMTSGNTSGAPICRDDNDAIAE-LSHLCDCMLSHNRKIRIRA 371 Query: 177 ESTIVNVQCEKKVRILRPGG 196 + ++++ ++ I R G Sbjct: 372 DDSVMDYYKDEPYMIRRSRG 391 >gi|152993244|ref|YP_001358965.1| hydrogenase maturation protein HypF [Sulfurovum sp. NBC37-1] gi|151425105|dbj|BAF72608.1| hydrogenase maturation protein HypF [Sulfurovum sp. NBC37-1] Length = 740 Score = 71.6 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 45/207 (21%), Positives = 82/207 (39%), Gaps = 18/207 (8%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMN 58 +S+ S + A + L G +A V G+ D+ N A+ +L E K+RP+ Sbjct: 196 LSVKRSEIIDMASQLLLDGNILA-----VKGVGGYHLMCDATNEEAVAKLRERKRRPS-K 249 Query: 59 PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC-F 117 P V ++ M + A + L + P+ L+ T + H N+ F Sbjct: 250 PFAVMVKNMDMAHQLAVISSKEEALLESK-ERPIVLLNAKRQTLNAH--VAPNISRIGLF 306 Query: 118 RVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI-GL 176 L+ T PL SAN + + T+ + + + ++D + G Sbjct: 307 LPYTPLHLLLLHTLNRPLVATSANVTDEPICTDRESL--EKLSDVYDYVLDHNRKIVNGC 364 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLK 203 + ++V V E+KV + R G ++K Sbjct: 365 DDSVVMVVREQKVTLRRARGYAPSSVK 391 >gi|226325558|ref|ZP_03801076.1| hypothetical protein COPCOM_03363 [Coprococcus comes ATCC 27758] gi|225206041|gb|EEG88395.1| hypothetical protein COPCOM_03363 [Coprococcus comes ATCC 27758] Length = 89 Score = 71.6 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 6/53 (11%) Query: 1 MQ-IMSITDSNALRK-----ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRR 47 M+ I+ D N + + A L G +A PTETVYGL ++ + A +R Sbjct: 4 METIIKKIDRNQIDQVIMEEAGSILKNGGLVAFPTETVYGLGANALDEEAAKR 56 >gi|146303695|ref|YP_001191011.1| (NiFe) hydrogenase maturation protein HypF [Metallosphaera sedula DSM 5348] gi|145701945|gb|ABP95087.1| (NiFe) hydrogenase maturation protein HypF [Metallosphaera sedula DSM 5348] Length = 743 Score = 71.6 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 36/197 (18%), Positives = 72/197 (36%), Gaps = 20/197 (10%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 + + ++ A + L G IAI G+ D + + L K RP+ P Sbjct: 199 EGDPIKLAGKLLTEGKIIAIK-----GIGGFHIACDPFDDDVVLTLRARKGRPS-KPFAV 252 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR---V 119 ++ A ++PL + + P ++L + I + L F Sbjct: 253 MSISSDIISNFAEINPLEKDILES--PERPIVLLKKREDSPISKHVSPGLDREGFFLYYT 310 Query: 120 PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LES 178 P + L E G+ L + SANR G T + + + + ++ + ++ Sbjct: 311 PLHYML-LSEVKGNTLVMTSANRHGYPMCTT-ESCVKEKLSGIVDYMLYHDREIVNRVDD 368 Query: 179 TIVNVQCEKKVRILRPG 195 +++ ++ ILR G Sbjct: 369 SVIKFAGN-RLHILRRG 384 >gi|289523009|ref|ZP_06439863.1| [NiFe] hydrogenase maturation protein HypF [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503552|gb|EFD24716.1| [NiFe] hydrogenase maturation protein HypF [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 756 Score = 71.2 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 34/197 (17%), Positives = 68/197 (34%), Gaps = 15/197 (7%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPL 60 + +A+ A ++L G +AI G+ D RN A++ L KKRP P Sbjct: 202 AINDDAVLLASKYLREGKILAIK-----GIGGYHLACDPRNDRAVKELRIRKKRP-DKPF 255 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 D+ K ++ ++ L P +V ++ N+ T +P Sbjct: 256 ALMARDLEAAKSIVLINEKAMKLL--LSPRRPIVVCPKYKDDNLSRYVAPNIDTYGIMLP 313 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK-IGLEST 179 L+ L + SAN S + + + L + + + ++ + Sbjct: 314 YTPIHHLLLEEQDLLIMTSANISDEPLVAGNREALK-KLGPIADYFLMHNRDIYVKIDDS 372 Query: 180 IVNVQCEKKVRILRPGG 196 ++ + + R G Sbjct: 373 VIAMAGMTPIFTRRARG 389 >gi|189219808|ref|YP_001940449.1| [NiFe] hydrogenase metallocenter assembly protein HypF [Methylacidiphilum infernorum V4] gi|189186666|gb|ACD83851.1| [NiFe] hydrogenase metallocenter assembly protein HypF [Methylacidiphilum infernorum V4] Length = 790 Score = 71.2 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 62/169 (36%), Gaps = 22/169 (13%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 A+++ + G +A V G+ D+ NP AI +L E K+R A P Sbjct: 211 EEAIKEGAWAIAEGQIVA-----VKGIGGYLLMADALNPAAILKLRERKRR-ASKPFALM 264 Query: 64 VSDISMVKKHASVDPLSLHLAKLFW----PGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 +DI V+K + + W P+ ++ + + I L T + Sbjct: 265 FNDIQEVEKEVYLSEK-----EKSWLISRQKPILILQRKKTQSPIADLVAPAQDTLGIML 319 Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 P L++ PL SAN SG + + +L + ++ Sbjct: 320 PYTPLHILLLDYLKRPLVATSANISGLPIVFE-EGMLFLKLGHVFDKVL 367 >gi|269797704|ref|YP_003311604.1| (NiFe) hydrogenase maturation protein HypF [Veillonella parvula DSM 2008] gi|269094333|gb|ACZ24324.1| (NiFe) hydrogenase maturation protein HypF [Veillonella parvula DSM 2008] Length = 759 Score = 71.2 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 39/190 (20%), Positives = 74/190 (38%), Gaps = 9/190 (4%) Query: 17 EFLDAGLPIAIPTETV--YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 E ++ G IAI + V Y L D+RN A++RL + K RP PL V + M + Sbjct: 215 ELINEGSIIAI--KGVGGYHLVCDARNDAAVQRLRKRKNRP-HKPLAIMVGTLDMAIELV 271 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLL-STTDIHPLSTANLKTACFRVPCGFTKKLIETYGH 133 ++ + L + P+ L+ S+ + + + +P +++ + Sbjct: 272 HINDVELDILTG-MERPIVLLEKNHNSSVHLSSYVAPDNRMLGVMLPYSPMHEVLLPFDA 330 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIVNVQCEKKVRIL 192 + S N+SG + N + + + + L+ ++V V K I Sbjct: 331 AWIMTSGNKSGDSVLYNDDQAFNE-LGEVADYFLVHNREIYAPLDDSVVVVINNKPRFIR 389 Query: 193 RPGGLEIETL 202 R G E + Sbjct: 390 RSRGYVPEPI 399 >gi|253827255|ref|ZP_04870140.1| transcriptional regulatory protein HypF [Helicobacter canadensis MIT 98-5491] gi|253510661|gb|EES89320.1| transcriptional regulatory protein HypF [Helicobacter canadensis MIT 98-5491] Length = 775 Score = 71.2 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 60/162 (37%), Gaps = 14/162 (8%) Query: 12 LRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 ++ A + L G +A+ Y L D+ N +I+ L E K RP P + Sbjct: 221 IKSALKALKEGKILAL-----KGIGGYALICDATNANSIKALRERKNRP-KKPFALMCKN 274 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126 I M K +A ++ ++ + P+ L L NL T +P Sbjct: 275 IQMAKNYAYLNSQAIAMLNSSI-SPIVLSYSKTKANLPLSLIAPNLSTLGIILPYSGLHH 333 Query: 127 LIETY-GHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 L+ PL SAN SG+ I + ++ + I+ Sbjct: 334 LLFHSIDFPLVFTSANISGEPIIKDCYSVI-QKLQNVCDGIL 374 >gi|224417916|ref|ZP_03655922.1| Hydrogenase maturation protein HypF [Helicobacter canadensis MIT 98-5491] gi|313141457|ref|ZP_07803650.1| hydrogenase maturation protein HypF [Helicobacter canadensis MIT 98-5491] gi|313130488|gb|EFR48105.1| hydrogenase maturation protein HypF [Helicobacter canadensis MIT 98-5491] Length = 770 Score = 71.2 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 60/162 (37%), Gaps = 14/162 (8%) Query: 12 LRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 ++ A + L G +A+ Y L D+ N +I+ L E K RP P + Sbjct: 216 IKSALKALKEGKILAL-----KGIGGYALICDATNANSIKALRERKNRP-KKPFALMCKN 269 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126 I M K +A ++ ++ + P+ L L NL T +P Sbjct: 270 IQMAKNYAYLNSQAIAMLNSSI-SPIVLSYSKTKANLPLSLIAPNLSTLGIILPYSGLHH 328 Query: 127 LIETY-GHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 L+ PL SAN SG+ I + ++ + I+ Sbjct: 329 LLFHSIDFPLVFTSANISGEPIIKDCYSVI-QKLQNVCDGIL 369 >gi|186680891|ref|YP_001864087.1| (NiFe) hydrogenase maturation protein HypF [Nostoc punctiforme PCC 73102] gi|186463343|gb|ACC79144.1| (NiFe) hydrogenase maturation protein HypF [Nostoc punctiforme PCC 73102] Length = 781 Score = 71.2 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 60/164 (36%), Gaps = 15/164 (9%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGL-----AVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 + + C L G +AI GL A D+ T +++L + KKR P Sbjct: 205 DDVDAVCTLLQKGEIVAIK-----GLSGIHLACDATQETVVQKLRQRKKR-YHKPFALMA 258 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123 DI +++++ +V+ L P+ ++L +S + P + T F +P Sbjct: 259 RDIEIIEQYCTVNAKEKELLTSSA-API-VLLQAISKKLVAPSVASGQNTLGFMLPYTPL 316 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 ++ P+ + S N + + + + + Sbjct: 317 HHLILRRMNRPIVLTSGNLADEPQCIDNDEA-REKLGTIADYFL 359 >gi|294155509|ref|YP_003559893.1| SUA5-like translation suppressor [Mycoplasma crocodyli MP145] gi|291600088|gb|ADE19584.1| SUA5-like translation suppressor [Mycoplasma crocodyli MP145] Length = 160 Score = 71.2 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 54/141 (38%), Gaps = 23/141 (16%) Query: 29 TETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFW 88 T+TV G+ N + +Y +KKRP ++ +S ++K + + A +W Sbjct: 11 TDTVSGIGG-PINSETLETIYFLKKRPFDKKIMIVAGSLSQIRKFKEWNKEAEAFASKYW 69 Query: 89 PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISI 148 PG +++++ FR+P + P+ + SAN SGQ + Sbjct: 70 PGSTSIIINGQ----------------GFRIPKSKKMQKFLIKHGPMYLTSANISGQSPL 113 Query: 149 T------NVKHILSSSICKEI 163 T K + ++ Sbjct: 114 TLKGAKKTFKEVSKFYFFGKL 134 >gi|14209676|gb|AAK56850.1|AF292554_2 [NiFe] hydrogenase maturation protein HypF [Thiocapsa roseopersicina] Length = 806 Score = 71.2 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 38/206 (18%), Positives = 70/206 (33%), Gaps = 27/206 (13%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 +A+ A L G +AI G+ D+ NP A+ L K+R PL Sbjct: 214 QDAIAAASGLLAEGRILAIK-----GIGGFHLACDATNPDAVAELRRRKRR-YAKPLALM 267 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDL------------LSTTDIHPLSTAN 111 D+ +++ + V GP +L L + P Sbjct: 268 ARDLDVIRGYCRVPGRDAEQLAELLSGPGAPILLLDRIRSDGAEQGGDPRRPLAPDVAPG 327 Query: 112 LKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 T +P L+E + PL + S N S + + L + + +++ Sbjct: 328 QMTLGVMLPYSPIHHLLLEDWDRPLVMTSGNLSEEPQCIDNADALG-RLGQLADVLLLHD 386 Query: 171 ISKIG-LESTIVNVQCEKKVRILRPG 195 + + ++ ++V V R+LR Sbjct: 387 RAILNRVDDSVVRVM-AGTPRLLRRA 411 >gi|218260464|ref|ZP_03475762.1| hypothetical protein PRABACTJOHN_01425 [Parabacteroides johnsonii DSM 18315] gi|218224518|gb|EEC97168.1| hypothetical protein PRABACTJOHN_01425 [Parabacteroides johnsonii DSM 18315] Length = 763 Score = 71.2 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 40/197 (20%), Positives = 76/197 (38%), Gaps = 19/197 (9%) Query: 21 AGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75 G IA T+ G+ D+RN A+ RL E+K+R P DI ++++ S Sbjct: 220 EGEVIA--TK---GIGGYHLICDARNEKAVSRLREVKQRD-GKPFAVLFRDIENIRRYVS 273 Query: 76 VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHP 134 ++ + + L W P+ L+ L + + P ++T +P E P Sbjct: 274 LNE-AEEESLLSWRRPIVLLKQLRA---LAPSVNPGMETLGCMLPYMPIHSDWFEQLDTP 329 Query: 135 L-AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIVNVQCEKKVRIL 192 + + S N S + + ++PL++ ++ +++ + + I Sbjct: 330 VLVMTSGNISECPIAITPEEA-EKQLAGKVPLLLHHNREIHNRVDDSVLQICGGQPCLIR 388 Query: 193 RPGGLEIETLKRAISVE 209 R G E I VE Sbjct: 389 RSRGYVPEPFFADIPVE 405 >gi|315923948|ref|ZP_07920176.1| hydrogenase maturation protein HypF [Pseudoramibacter alactolyticus ATCC 23263] gi|315622788|gb|EFV02741.1| hydrogenase maturation protein HypF [Pseudoramibacter alactolyticus ATCC 23263] Length = 771 Score = 71.2 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 36/204 (17%), Positives = 68/204 (33%), Gaps = 21/204 (10%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59 + D A+ A + G +A V G+ D+ + A+ RL K RP P Sbjct: 195 DLKDRLAITAARRMIAGGGVVA-----VKGIGGFHLCCDATDEAAVMRLRRHKHRP-TKP 248 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 D + + + P+ + P+ L L ++ K + Sbjct: 249 FAVMARDEAAADRECVIGPVQRAVLTGH-QKPIAL-LPKKASGRAADAVAPGAKALGLML 306 Query: 120 PCGFTKKLIETYG----HP--LAIPSANRSGQISITNVKHILSSSICKEIPLII-DGGIS 172 P + L+ TY P L + S N SG N + + LI+ + Sbjct: 307 PYAPIQLLLFTYDDDVSVPDLLVMTSGNVSGAPICRNDAEAVQE-LGNLCDLILSNDRPI 365 Query: 173 KIGLESTIVNVQCEKKVRILRPGG 196 + + ++++ + + R G Sbjct: 366 RTRADDSVMDFLEDAPYMVRRSRG 389 >gi|307265657|ref|ZP_07547210.1| (NiFe) hydrogenase maturation protein HypF [Thermoanaerobacter wiegelii Rt8.B1] gi|306919301|gb|EFN49522.1| (NiFe) hydrogenase maturation protein HypF [Thermoanaerobacter wiegelii Rt8.B1] Length = 751 Score = 70.9 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 41/241 (17%), Positives = 74/241 (30%), Gaps = 37/241 (15%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLIC 62 + + ++ + L G +AI G+ ++ + A+ L KKR P Sbjct: 201 EEDEIKCVADALKRGKIVAIK-----GIGGFHLAVNALSDEAVFTLRSRKKR-YGKPFAV 254 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 + DI+ V+K+ V L +VL + L T +P Sbjct: 255 MMKDINQVEKYCFVSDEEKKLL---LSQRRPIVLLKKKGEKLAKGVADGLDTLGVMLPYA 311 Query: 123 FTKKLI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 L+ + P+ + S N S + + + L + + IV Sbjct: 312 PIHYLLMDQIDFPIVMTSGNVSEEPICKDNEEAL-EKLKDIADAFLLNNRD-------IV 363 Query: 182 NVQCEKKVRILRPGGLEIETLKRAISV---ELEYCVDETSTPQSPGMLKS--------HY 230 N + + V G I ++RA + D + G HY Sbjct: 364 N-RIDDSVTSFNGGAERI--IRRARGYAPQPILLKKDAKVNVLAVGGFYKNTFCITHGHY 420 Query: 231 A 231 A Sbjct: 421 A 421 >gi|312880696|ref|ZP_07740496.1| (NiFe) hydrogenase maturation protein HypF [Aminomonas paucivorans DSM 12260] gi|310783987|gb|EFQ24385.1| (NiFe) hydrogenase maturation protein HypF [Aminomonas paucivorans DSM 12260] Length = 754 Score = 70.9 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 38/202 (18%), Positives = 66/202 (32%), Gaps = 17/202 (8%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 + A+R+A E L G +A+ GL D + L E K+RP P Sbjct: 201 EDEAIRQAREALTGGRILALK-----GLGGFHLACDPTRDAPVALLRERKRRP-HKPFAV 254 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 V D+ + + P S L P ++ + + PL T +P Sbjct: 255 LVPDLEAAGRLVRLTPTSRDLLAS--PRGPIVLCPVREDGPLSPLVAPGQDTLGVFLPTT 312 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILS--SSICKEIPLIIDGGISKIGLESTI 180 L+ L + S NR + + L+ L + ++ ++ Sbjct: 313 PLHHLVAEGFPALLMTSGNRGEEPLAAGNREALATLRDFADRFLLHDRDIHNP--VDDSV 370 Query: 181 VNVQCEKKVRILRPGGLEIETL 202 V + + + R G E L Sbjct: 371 VAPAGRRTILLRRSRGYVPEPL 392 >gi|295812107|gb|ADG34828.1| HypF [Aphanizomenon sp. 10E6] Length = 783 Score = 70.9 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 34/193 (17%), Positives = 72/193 (37%), Gaps = 17/193 (8%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 + + C L G +AI GL ++ A+ +L K R PL Sbjct: 205 DDVDAVCTLLQKGEIVAIK-----GLGGFHLACNATLENAVSKLRNRKIR-CHKPLALMA 258 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123 DI+++ ++ V+ L L P+ ++L++ + + P T F +P Sbjct: 259 RDINIISEYCYVNDLEKELLTNSA-API-VLLNIKDQSKLAPSIAPGQNTLGFMLPYTPL 316 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIVN 182 ++ P+ + S N S Q + + + K + + ++ ++V Sbjct: 317 HHLILRRMKVPIVLTSGNISDQPQCIDNEDA-KDKLSKIADYFLLHNRDIVNRVDDSVVR 375 Query: 183 VQCEKKVRILRPG 195 V + +++ LR Sbjct: 376 VI-DNQIQTLRRA 387 >gi|283835559|ref|ZP_06355300.1| [NiFe] hydrogenase maturation protein HypF [Citrobacter youngae ATCC 29220] gi|291068769|gb|EFE06878.1| [NiFe] hydrogenase maturation protein HypF [Citrobacter youngae ATCC 29220] Length = 746 Score = 70.9 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 51/155 (32%), Gaps = 20/155 (12%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 AL+ A L AG +A V G+ D+RN +A+ L K RPA PL Sbjct: 200 EEALQAAVALLKAGGIVA-----VKGIGGFHLVCDARNDSAVALLRLRKHRPA-KPLAVM 253 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 + + + L P +++ + L +P Sbjct: 254 LPADDGLS------EAACRLLN--TPAAPIVLVQKRDVAALSEGIAPGLTEVGVMLPANP 305 Query: 124 TKK-LIETYGHPLAIPSANRSGQISITNVKHILSS 157 + L++ PL + S N SG+ L Sbjct: 306 LQHLLLQEMNCPLVMTSGNLSGRPPAITNAQALED 340 >gi|291300925|ref|YP_003512203.1| (NiFe) hydrogenase maturation protein HypF [Stackebrandtia nassauensis DSM 44728] gi|290570145|gb|ADD43110.1| (NiFe) hydrogenase maturation protein HypF [Stackebrandtia nassauensis DSM 44728] Length = 764 Score = 70.9 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 42/196 (21%), Positives = 70/196 (35%), Gaps = 18/196 (9%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICH 63 AL +A L+ G IA+ G+ D+ + TA+RRL +K RP PL Sbjct: 207 EAALSQAIAVLETGGLIAMK-----GVGGYQLVTDAGDDTAVRRLRHVKNRP-GKPLAVM 260 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CG 122 V + ++ A +D L P +V + L L +P Sbjct: 261 VGTLDRARRLADLDTDEAKLLTA--PAAPIVVCHSPHLETLSSLVAPRLSHVGVFLPYSP 318 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII--DGGISKIGLESTI 180 L+ PL + S N G+ I + + ++ D I + +S + Sbjct: 319 LHHLLLAALDRPLVVTSGNLGGEPIIIGD-EAARDRLGPMVDGVLGHDRPIRERHDDS-V 376 Query: 181 VNVQCEKKVRILRPGG 196 V V + + + R G Sbjct: 377 VRVVDGETLTLRRARG 392 >gi|256383695|gb|ACU78265.1| conserved hypothetical protein [Mycoplasma mycoides subsp. capri str. GM12] gi|256384526|gb|ACU79095.1| conserved hypothetical protein [Mycoplasma mycoides subsp. capri str. GM12] gi|296455873|gb|ADH22108.1| conserved hypothetical protein [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 166 Score = 70.9 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 21/174 (12%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + KA E L I +PT+T+YGL+ I R+ ++K PLI +S++ + Sbjct: 7 INKAIELLKNNQIIILPTDTIYGLSAIYSLENQI-RVNQVKNADITKPLIVLISNLDQLN 65 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLIET 130 + L+ L P T++ S+ + R V K++I Sbjct: 66 DL-EITDLTDKDY-LLNDEPTTVIFKTKSS------------SIAIRLVKREDIKQIINK 111 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG--GISKIGLESTIVN 182 G P+ S N + +++ K I L D + S+I+ Sbjct: 112 TG-PIISTSVNLHNFKPLIKENDLIN--FNKNIELFFDTQLNNKPSKIYSSIIK 162 >gi|226330252|ref|ZP_03805770.1| hypothetical protein PROPEN_04165 [Proteus penneri ATCC 35198] gi|225201047|gb|EEG83401.1| hypothetical protein PROPEN_04165 [Proteus penneri ATCC 35198] Length = 95 Score = 70.5 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 3/92 (3%) Query: 109 TANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 KT RVP L+E G PL S G + + + K++ L+I Sbjct: 2 NDKRKTIGLRVPSNPIALALLENIGEPLMSTSLILPGNDFAESDPEEIEDLLSKQVDLVI 61 Query: 168 DGGISKIGLESTIVNVQCEKKVRILRPGGLEI 199 GG +T++++ + V I+R G +I Sbjct: 62 HGGYLGQ-KPTTVIDLTEDTPV-IVREGTGDI 91 >gi|315638678|ref|ZP_07893852.1| hydrogenase maturation protein HypF [Campylobacter upsaliensis JV21] gi|315481302|gb|EFU71932.1| hydrogenase maturation protein HypF [Campylobacter upsaliensis JV21] Length = 727 Score = 70.5 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 37/166 (22%), Positives = 57/166 (34%), Gaps = 20/166 (12%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 A + + L G IAI GL D+ N A++ L K RP P Sbjct: 202 EAFKLCAKLLKEGKIIAIK-----GLGGFHLMCDALNENALKALRVRKNRPL-KPFALMC 255 Query: 65 SDISMVKKHASVDPLSLHLAK-LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CG 122 ++ + A +D +L + P + LL PL N+ + Sbjct: 256 KNLEEAQNLAYIDENEANLLESRVAP------IVLLKAKKNFPLIAPNVDKIGIFLAYTP 309 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 L E + L SAN SG+ I K++L + +D Sbjct: 310 LHLLLFEYFDGSLVATSANLSGESIIYEEKNLL-QKLGGVFDYYLD 354 >gi|57242241|ref|ZP_00370180.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter upsaliensis RM3195] gi|57016921|gb|EAL53703.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter upsaliensis RM3195] Length = 727 Score = 70.5 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 37/166 (22%), Positives = 57/166 (34%), Gaps = 20/166 (12%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 A + + L G IAI GL D+ N A++ L K RP P Sbjct: 202 EAFKLCAKLLKEGKIIAIK-----GLGGFHLMCDALNENALKALRVRKNRPL-KPFALMC 255 Query: 65 SDISMVKKHASVDPLSLHLAK-LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CG 122 ++ + A +D +L + P + LL PL N+ + Sbjct: 256 KNLEEAQNLAYIDENEANLLESRVAP------IVLLKAKKNFPLIAPNVDKIGIFLAYTP 309 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 L E + L SAN SG+ I K++L + +D Sbjct: 310 LHLLLFEYFDGSLVATSANLSGESIIYEEKNLL-QKLGGVFDYYLD 354 >gi|315634610|ref|ZP_07889894.1| hydrogenase maturation protein HypF [Aggregatibacter segnis ATCC 33393] gi|315476558|gb|EFU67306.1| hydrogenase maturation protein HypF [Aggregatibacter segnis ATCC 33393] Length = 760 Score = 70.5 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 60/170 (35%), Gaps = 20/170 (11%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPL 60 I + ++ FL G +A V G+ D+ A++ L + K RP+ PL Sbjct: 199 IDEKTPIKTTALFLQQGKIVA-----VKGIGGFHLACDATQADAVQLLRDRKHRPS-KPL 252 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD-IHPLSTANLKTACFRV 119 V D+S +K L+ KL +VL + L + Sbjct: 253 AVMVPDVSFLK------DLTEKEIKLLTSTAAPIVLLAKHKVPSLAEQIAPQLNEIGVML 306 Query: 120 PCGFTKK-LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 P + L+ PL + SAN SGQ + + + + + + Sbjct: 307 PSNPLQHLLLREVNRPLVMTSANPSGQPPVLDNQSAV-EYLSDLADYFLC 355 >gi|147678031|ref|YP_001212246.1| hydrogenase maturation factor [Pelotomaculum thermopropionicum SI] gi|146274128|dbj|BAF59877.1| hydrogenase maturation factor [Pelotomaculum thermopropionicum SI] Length = 771 Score = 70.5 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 33/167 (19%), Positives = 58/167 (34%), Gaps = 19/167 (11%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 N L+K E + G +A+ GL D+RN AI L + K R A P Sbjct: 211 ENWLQKCWEIIQKGNILALK-----GLGGFHLTCDARNKEAIAALRQRKGRDA-KPFAVM 264 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 D+ +K+ +D + P ++L ++ L T +P Sbjct: 265 CRDLETAEKYCLLDKREREILSS--PQAPIVILRRKPDAELPEELAPGLNTLGVMLPYTP 322 Query: 124 TKKLIETYGHPL---AIPSANRSGQISITNVKHILSSSICKEIPLII 167 L+ + P + S N SG + + L+ + + + Sbjct: 323 LHLLL--FSGPFDLLVMTSGNYSGLPLVKDNARALNE-LGQIADYFL 366 >gi|257062806|ref|YP_003142478.1| (NiFe) hydrogenase maturation protein HypF [Slackia heliotrinireducens DSM 20476] gi|256790459|gb|ACV21129.1| (NiFe) hydrogenase maturation protein HypF [Slackia heliotrinireducens DSM 20476] Length = 785 Score = 70.5 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 41/234 (17%), Positives = 77/234 (32%), Gaps = 31/234 (13%) Query: 4 MSITDSNAL-RKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAM 57 + + S+A+ +A + L G +AI GL D+ NP A+ L K+R Sbjct: 202 LDLASSDAIVERAAQCLRQGRILAIK-----GLGGFHLACDAANPEALAELRRRKRR-EG 255 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPL--TLVLDLLSTTDIHPLSTANLKTA 115 V ++ V+ V L G + ++L + P L Sbjct: 256 KAFAVMVPNLDAVRAVCHVSKAEEDLL----TGSVRPIVLLKKRAEATFAPGLCDKLPEL 311 Query: 116 CFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174 +P L+ +G L + S N + T+ + + + I Sbjct: 312 GIMLPYTPLQHLLLAAFGGMLVMTSGNLHDEPIQTDDEEAF-AKLGGIADAFIGNDRP-- 368 Query: 175 GLESTIVNVQCEKKVRILRPG--GLEIETLKRAISVELEYCVDETSTPQSPGML 226 IV + VR+++ G G ++ ++RA + + G Sbjct: 369 -----IVTRFDDSVVRVIQVGTAGDALQMVRRARGYAPMPVPLKRHA--AEGQK 415 >gi|326389239|ref|ZP_08210807.1| (NiFe) hydrogenase maturation protein HypF [Thermoanaerobacter ethanolicus JW 200] gi|325994602|gb|EGD53026.1| (NiFe) hydrogenase maturation protein HypF [Thermoanaerobacter ethanolicus JW 200] Length = 751 Score = 70.5 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 55/165 (33%), Gaps = 16/165 (9%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICH 63 + ++ A + L G +AI G+ ++ + A+ L KKR P Sbjct: 202 EDEIKCAVDALKRGKILAIK-----GIGGFHLAVNALDDEAVSTLRSRKKR-YGKPFAVM 255 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 + DI VK++ + L +VL + L T +P Sbjct: 256 MKDIKQVKEYCILSEEEKKLL---LSQRKPIVLLKKKGEKLARGVADGLDTLGVMLPYAP 312 Query: 124 TKKLI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 L+ E P+ + S N S + + + L + + + Sbjct: 313 IHYLLMEEIDFPIVMTSGNVSEEPLCKDNEEAL-EKLKDIADVFL 356 >gi|67924417|ref|ZP_00517844.1| Hydrogenase maturation protein HypF [Crocosphaera watsonii WH 8501] gi|67853729|gb|EAM49061.1| Hydrogenase maturation protein HypF [Crocosphaera watsonii WH 8501] Length = 768 Score = 70.5 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 40/200 (20%), Positives = 75/200 (37%), Gaps = 19/200 (9%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLI 61 D++AL + L G IA+ GL +++N ++++L + K RP P Sbjct: 200 NDNDALNLSINALKKGQIIALK-----GLGGFQLIVNAKNRESVQQLRKRKHRP-HKPFA 253 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTT---DIHPLSTANLKTACFR 118 S + +K + V+ + L P ++L S T D+ P N Sbjct: 254 LMNSSLEKIKSYCEVNDIEAQLLSS--PQAPIVLLKRKSKTPLDDLSPNIAPNNPYLGVM 311 Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-L 176 +P L+ PL S N + + + K L + L + + + Sbjct: 312 LPSSPLHHLLLHKIDFPLVATSGNIASEPICIDEKEALK-RLENIADLFLVHNRPILRPV 370 Query: 177 ESTIVNVQCEKKVRILRPGG 196 + ++V V +++ I R G Sbjct: 371 DDSVVRVIAGREMIIRRARG 390 >gi|21674611|ref|NP_662676.1| hydrogenase maturation protein HypF [Chlorobium tepidum TLS] gi|21647811|gb|AAM73018.1| hydrogenase maturation protein HypF [Chlorobium tepidum TLS] Length = 774 Score = 70.5 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 40/193 (20%), Positives = 67/193 (34%), Gaps = 19/193 (9%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICHV 64 + + A E L G +AI G+ D+ N A+RRL K R P V Sbjct: 217 DEITAAGELLAGGKILAIK-----GIGGFHLAVDASNEAAVRRLRSRKGR-EEKPFAVMV 270 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 D++ + + P A L P ++L + P +P Sbjct: 271 RDLAAARALCDISPE--EKAALASPQAPIVLLRARQGLSLAPSIAPGNDRLGVMLPYSPL 328 Query: 125 KKLIETYG-HPLAIPSANRSGQISITNVKHILSSSICKEIPLII--DGGISKIGLESTIV 181 L+ G L + SAN S + + + L + + D I++ +S V Sbjct: 329 HWLLLREGPKVLVMTSANFSEEPLVADNAEAL-ERLAGIADAFLMHDRPIARRCDDS--V 385 Query: 182 NVQCEKKVRILRP 194 + VR++R Sbjct: 386 VMSMAGAVRLIRR 398 >gi|289549183|ref|YP_003474171.1| (NiFe) hydrogenase maturation protein HypF [Thermocrinis albus DSM 14484] gi|289182800|gb|ADC90044.1| (NiFe) hydrogenase maturation protein HypF [Thermocrinis albus DSM 14484] Length = 755 Score = 70.5 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 40/198 (20%), Positives = 67/198 (33%), Gaps = 18/198 (9%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPL 60 T AL + L G +A V G+ + N +R L E K+R P Sbjct: 204 ATHQEALELTVKALMDGRIVA-----VKGIGGFHLMCSAVNEETVRTLRERKRR-QEKPF 257 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 DI V +A DPL + L P ++ + + P LK +P Sbjct: 258 AVMFRDIHQVLLYAEPDPLEIALLLS----PQRPIVLVKGKGGLAPSVAPGLKKIGAFLP 313 Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL-ES 178 L+ + P+ S N S + + + L + LI+ + + Sbjct: 314 YSPLHHILLSSLNVPVIATSGNMSDEPIVKDNHEALC-KLSHFADLILLHNRDIVRRCDD 372 Query: 179 TIVNVQCEKKVRILRPGG 196 +++ V + I R G Sbjct: 373 SVIKVVGGVPLPIRRSRG 390 >gi|168230901|ref|ZP_02655959.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194468469|ref|ZP_03074453.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194454833|gb|EDX43672.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205334496|gb|EDZ21260.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 746 Score = 70.1 bits (171), Expect = 4e-10, Method: Composition-based stats. Identities = 36/155 (23%), Positives = 56/155 (36%), Gaps = 20/155 (12%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 AL+ A L+AG IA V GL D+RN A+ L K RPA PL Sbjct: 200 EAALQAAVAELNAGGIIA-----VKGLGGFHLACDARNDNAVAMLRARKHRPA-KPLAVM 253 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 + + P + + L P +++D + L +P Sbjct: 254 LPKAQTL-------PSAAR-SLLTTPAAPIVLVDKQYVPSLSEGIAPGLTEVGVMLPANP 305 Query: 124 TKK-LIETYGHPLAIPSANRSGQISITNVKHILSS 157 + L++ +PL + S N SG+ + L Sbjct: 306 LQHLLLQALNYPLVMTSGNLSGKPPAITNEQALDD 340 >gi|38233276|ref|NP_939043.1| putative hydrogenase maturation protein [Corynebacterium diphtheriae NCTC 13129] gi|38199535|emb|CAE49186.1| Putative hydrogenase maturation protein [Corynebacterium diphtheriae] Length = 744 Score = 70.1 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 40/196 (20%), Positives = 68/196 (34%), Gaps = 19/196 (9%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 + + + + G +A V GL D+ N A+R L E K RP PL Sbjct: 206 DDPIAYCRDAISKGKIVA-----VKGLGGFHLMCDATNDEAVRTLRERKHRP-TKPLAVM 259 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWP-GPLTLVLDLLSTT-DIHPLSTANLKTACFRVPC 121 + D+ ++ A +D + + P P+ LV + L L +P Sbjct: 260 IPDVEKARELARLDADTTAVLTD--PAHPIVLVPTTSKQRLKLSLLIAPGLDYVGLVLPY 317 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII-DGGISKIGLESTI 180 L+ P+ SAN SG+ + ++ + + I +E ++ Sbjct: 318 TPLHTLL--VDSPVVATSANNSGEPLC-WDNDVARENLTHLADVFLMHDRPIHIPVEDSV 374 Query: 181 VNVQCEKKVRILRPGG 196 V V I R G Sbjct: 375 VVPSAHGIVPIRRSRG 390 >gi|226326234|ref|ZP_03801752.1| hypothetical protein PROPEN_00076 [Proteus penneri ATCC 35198] gi|225205312|gb|EEG87666.1| hypothetical protein PROPEN_00076 [Proteus penneri ATCC 35198] Length = 449 Score = 70.1 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 48/207 (23%), Positives = 82/207 (39%), Gaps = 19/207 (9%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPL 60 T +AL +ACE L AG IA V G+ D+RN ++ L E K RPA PL Sbjct: 188 ATKEHALTQACEALLAGKIIA-----VKGIGGFHLVCDARNNESVALLRERKYRPA-KPL 241 Query: 61 ICHVSDISMVKKHASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 ++ I +K + P ++ + P+ LV + + L L Sbjct: 242 AVMITGIDQIKANKQDPDFLPTAIQTLQSTA-SPIVLV-PKIVVPKLADLIAPGLTEIGV 299 Query: 118 RVPCGFTKKLIETYGH-PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 +P + L+ + PL + S N SG + + L+ + L + I Sbjct: 300 MLPANPLQHLLARGTNIPLVMTSGNASGHTPALSNEEALT-QLKDIADLFLMHNREIIQR 358 Query: 177 E-STIVNVQCEKKVRILRPGGLEIETL 202 ++V ++ ++ V I R G + + Sbjct: 359 ADDSLVRIEGKQSVMIRRSRGYVPDAI 385 >gi|317493907|ref|ZP_07952324.1| hydrogenase maturation protein HypF [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918234|gb|EFV39576.1| hydrogenase maturation protein HypF [Enterobacteriaceae bacterium 9_2_54FAA] Length = 757 Score = 70.1 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 65/190 (34%), Gaps = 14/190 (7%) Query: 13 RKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 ++ + L G AI G+ D+ NP AI+ L E K+RPA PL + + Sbjct: 196 KELIDVLLNGGIAAIK-----GIGGFHLACDASNPQAIQLLRERKRRPA-KPLAVMLPNE 249 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK- 126 V+ D + L P ++ L ++ + L +P Sbjct: 250 HWVRAFCRDDVSADLL--SLLKSPAAPIVLLPKSSLVLDGIAPGLDEVGVMLPSNPVHHL 307 Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186 L++ G PL + S N +G + + L ++ + +++ Sbjct: 308 LLQKIGRPLVMTSGNANGLPPALSNQQALHELTGIADIWLLHNRDIVQRADDSVIRWHTN 367 Query: 187 KKVRILRPGG 196 + R G Sbjct: 368 GSEMLRRSRG 377 >gi|146279404|ref|YP_001169562.1| nickel-dependent hydrogenase, large subunit [Rhodobacter sphaeroides ATCC 17025] gi|145557645|gb|ABP72257.1| nickel-dependent hydrogenase, large subunit [Rhodobacter sphaeroides ATCC 17025] Length = 758 Score = 69.7 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 34/143 (23%), Positives = 54/143 (37%), Gaps = 17/143 (11%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 AL +A L G +A V GL D+RN A+ RL K+RP P + Sbjct: 215 ALAEAVALLRHGGVLA-----VKGLGGFHLACDARNAEAVARLRLRKRRP-GKPFAVMAA 268 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFT 124 + M + A + L + P V+ + S + + +P Sbjct: 269 E-EMADRIAEISEADRALLRD----PAAPVVLVPSRGVLPEGVAPGMAALGLMLPYTPLH 323 Query: 125 KKLIETYGHPLAIPSANRSGQIS 147 L++ +G PL + S N SG+ Sbjct: 324 HLLLQGFGGPLVMTSGNLSGEPQ 346 >gi|242278612|ref|YP_002990741.1| (NiFe) hydrogenase maturation protein HypF [Desulfovibrio salexigens DSM 2638] gi|242121506|gb|ACS79202.1| (NiFe) hydrogenase maturation protein HypF [Desulfovibrio salexigens DSM 2638] Length = 780 Score = 69.7 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 39/168 (23%), Positives = 64/168 (38%), Gaps = 19/168 (11%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 ALR+ + L G V GL D+ NP A+R L E K RP PL V Sbjct: 208 ALRELAKLLAGGKVAG-----VKGLGGFHLVCDASNPDAVRTLRERKNRP-DKPLAVMVR 261 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125 D+ +K A + + L + P+ L + P + VP Sbjct: 262 DVDEARKLADLTDNDIELLEG-LQRPIVLA-PKGDNYSLAPEIAPDTDFIGLMVPYTPLH 319 Query: 126 KLIETYGHPL---AIPSANRSGQISITNVKHIL--SSSICKEIPLIID 168 +++ Y L +PSA ++++ + ++ K +P I+D Sbjct: 320 QVLLKYVSTLNDSDLPSALVMTSGNMSSAPICIGNREAL-KRLPHIVD 366 >gi|42560705|ref|NP_975156.1| hypothetical protein MSC_0153 [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|42492201|emb|CAE76798.1| conserved hypothetical protein [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301320762|gb|ADK69405.1| conserved hypothetical protein [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 166 Score = 69.7 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 66/174 (37%), Gaps = 21/174 (12%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + KA E L I +PT+T+YGL+ I R+ ++K PLI +S+++ + Sbjct: 7 INKAIELLKNNQIIILPTDTIYGLSAIYSLENQI-RVNQVKNADITKPLIVLISNLNQLN 65 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLIET 130 + L+ L P T++ S+ + R V K++I Sbjct: 66 DL-EITDLTDKDY-LLNDEPTTVIFKTKSS------------SIAIRLVKREDIKQIINK 111 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG--GISKIGLESTIVN 182 G P+ S N + +++ K I + D + S+I+ Sbjct: 112 IG-PIISTSVNLHNFKPLIKESDLIN--FNKNIEVFFDTQLNNKPSKIYSSIIK 162 >gi|330829830|ref|YP_004392782.1| hydrogenase maturation protein HypF [Aeromonas veronii B565] gi|328804966|gb|AEB50165.1| hydrogenase maturation protein HypF [Aeromonas veronii B565] Length = 808 Score = 69.7 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 53/147 (36%), Gaps = 14/147 (9%) Query: 33 YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPL 92 Y L D+RN ++ RL +K+R PL + ++ K H + L P+ Sbjct: 244 YHLMCDARNEQSVARLRTLKRRAR-KPLAVMMGSLAEAKLHVTGSEDEWKLLASQA-RPI 301 Query: 93 TLVLDLL----------STTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSAN 141 TL+ S + + +P + L++ PL SAN Sbjct: 302 TLLHKSKNDDRHSESGPSAAPLAEGIAPGIPYLGVMLPYTPLHQLLLDACAMPLVATSAN 361 Query: 142 RSGQISITNVKHILSSSICKEIPLIID 168 G + + ++ + EI I+D Sbjct: 362 GRGSPILIECEAVVRE-LGSEIDGILD 387 >gi|212711146|ref|ZP_03319274.1| hypothetical protein PROVALCAL_02218 [Providencia alcalifaciens DSM 30120] gi|212686314|gb|EEB45842.1| hypothetical protein PROVALCAL_02218 [Providencia alcalifaciens DSM 30120] Length = 760 Score = 69.7 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 54/153 (35%), Gaps = 13/153 (8%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 AL + L G +AI GL D+ + I RL + K RP+ PL V Sbjct: 202 ALEQTASHLLNGKIVAIK-----GLGGFHLACDATHTHVIERLRQRKHRPS-KPLAVMVP 255 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125 I +K+ L P+ L+ + + +L+ +P + Sbjct: 256 SIDWLKEQGVTLTEGLCALLESAAAPIVLIHKW-KNSVLSENIAPHLREIGIMLPSNPLQ 314 Query: 126 KLI-ETYGHPLAIPSANRSGQISITNVKHILSS 157 L+ E PL + S N SG+ + + Sbjct: 315 HLLMEQVNKPLVMTSGNASGKPPVLTAQAAFLD 347 >gi|149204144|ref|ZP_01881112.1| hydrogenase maturation factor F [Roseovarius sp. TM1035] gi|149142586|gb|EDM30631.1| hydrogenase maturation factor F [Roseovarius sp. TM1035] Length = 737 Score = 69.7 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 61/165 (36%), Gaps = 19/165 (11%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 +A+ A L AG IA V GL D+ + A+ RL K+RP P Sbjct: 191 DAVAGAVAVLRAGGSIA-----VKGLGGFHLACDAGSGEAVARLRARKRRP-GKPFALM- 243 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-P-CG 122 ++M++ +V L + P ++ L ++ P A + + P Sbjct: 244 GTLAMIRAVCAVSEEEAALLRD----PAAPIVLLRKRAEVLPDVVAPGQAVLGWMLPYTP 299 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 LI +G PL + S N SG+ + + + + + Sbjct: 300 LHHLLIAEFGGPLVMTSGNLSGEPQVIGNEEA-REKLGGFVDAFL 343 >gi|303250584|ref|ZP_07336781.1| hydrogenase maturation factor [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252970|ref|ZP_07534858.1| hypothetical protein appser6_14810 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302650572|gb|EFL80731.1| hydrogenase maturation factor [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306859608|gb|EFM91633.1| hypothetical protein appser6_14810 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 767 Score = 69.7 bits (170), Expect = 7e-10, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 58/154 (37%), Gaps = 17/154 (11%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 +A+ +A E L G +A V GL D+ I L K RP+ P V Sbjct: 209 SAILEAVEKLRQGCIVA-----VKGLGGFHLACDATQAKTIDLLRRRKTRPS-KPFAVMV 262 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 +++ + + + L + P+ ++L T IH L +P Sbjct: 263 PNLNWLTELTEEEKTQLQSSAA----PI-VLLAKHKTKQIHDAVAPQLNEIGVMLPSNPL 317 Query: 125 KKLI-ETYGHPLAIPSANRSGQISITNVKHILSS 157 + L+ + PL + SAN+SG + + S Sbjct: 318 QHLLMKEINKPLVMTSANQSGLPPVLDNDDAFSQ 351 >gi|165976755|ref|YP_001652348.1| hydrogenase maturation factor [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165876856|gb|ABY69904.1| hydrogenase maturation factor [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 767 Score = 69.7 bits (170), Expect = 7e-10, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 58/154 (37%), Gaps = 17/154 (11%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 +A+ +A E L G +A V GL D+ I L K RP+ P V Sbjct: 209 SAILEAVEKLRQGCIVA-----VKGLGGFHLACDATQAKTIDLLRRRKTRPS-KPFAVMV 262 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 +++ + + + L + P+ ++L T IH L +P Sbjct: 263 PNLNWLTELTEEEKTQLQSSAA----PI-VLLAKHKTKQIHDAVAPQLNEIGVMLPSNPL 317 Query: 125 KKLI-ETYGHPLAIPSANRSGQISITNVKHILSS 157 + L+ + PL + SAN+SG + + S Sbjct: 318 QHLLMKEINKPLVMTSANQSGLPPVLDNDDAFSQ 351 >gi|288941674|ref|YP_003443914.1| (NiFe) hydrogenase maturation protein HypF [Allochromatium vinosum DSM 180] gi|288897046|gb|ADC62882.1| (NiFe) hydrogenase maturation protein HypF [Allochromatium vinosum DSM 180] Length = 789 Score = 69.3 bits (169), Expect = 7e-10, Method: Composition-based stats. Identities = 37/194 (19%), Positives = 73/194 (37%), Gaps = 17/194 (8%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 +A+ A L G +AI G+ D+ + TA+ L + K+R P Sbjct: 210 PDAIAAASRLLTEGRILAIK-----GIGGFHLACDATHDTAVETLRQRKRR-FAKPFALM 263 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CG 122 D ++++HA + L P L+L+ L +D+ P T F +P Sbjct: 264 ARDPDVIRRHARLSELEAEWLAS--PAAPILLLERLRESDLAPGIAPGQSTLGFMLPYSP 321 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIV 181 L+ + PL + S N S + + L + + ++ + ++ ++ Sbjct: 322 LHHLLLADWDRPLVMTSGNLSDEPPCIDNADAL-ARLSGLADHLLLHDRDIVNRVDDSVW 380 Query: 182 NVQCEKKVRILRPG 195 + + + R LR Sbjct: 381 RLM-DGRPRPLRRA 393 >gi|47177028|ref|YP_015639.1| [Ni/Fe] hydrogenase maturation protein [Oligotropha carboxidovorans OM5] gi|47115419|emb|CAG28472.1| [NiFe] hydrogenase maturation protein HypF [Oligotropha carboxidovorans OM5] Length = 787 Score = 69.3 bits (169), Expect = 7e-10, Method: Composition-based stats. Identities = 37/166 (22%), Positives = 68/166 (40%), Gaps = 9/166 (5%) Query: 33 YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD-PLSLHLAKLFWPGP 91 Y LA D+ +P A+ RL +K+R A P D+ MV+++ SVD L P Sbjct: 221 YQLACDATDPDAVARLRGLKRREA-KPFALMARDLDMVRRYCSVDAQEEAVLLSREAP-- 277 Query: 92 LTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANRSGQISITN 150 ++L+ + + F +P L ++ P+ + S N S +T+ Sbjct: 278 -IVLLESSGREKLPETIAPGQRMLGFMLPSTPLHVVLFQSLDRPVVMTSGNVSDMPQVTD 336 Query: 151 VKHILSSSICKEIPL-IIDGGISKIGLESTIVNVQCEKKVRILRPG 195 + + + P ++ I ++ ++V V +RILR Sbjct: 337 DAEAV-ALLAGIAPYALVHDRIIANRVDDSVVRVMGSD-IRILRRA 380 >gi|319955838|ref|YP_004167101.1| (nife) hydrogenase maturation protein hypf [Nitratifractor salsuginis DSM 16511] gi|319418242|gb|ADV45352.1| (NiFe) hydrogenase maturation protein HypF [Nitratifractor salsuginis DSM 16511] Length = 766 Score = 69.3 bits (169), Expect = 7e-10, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 60/167 (35%), Gaps = 16/167 (9%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 + + KA + + G +A V GL D+ N A+ L K+RP+ P V Sbjct: 211 SLIEKAAKMIREGKIVA-----VKGLGGFHLVCDASNAEAVAALRRRKRRPS-KPFAVMV 264 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVP-C 121 D++M + A +D L + P+ L+ + + + +P Sbjct: 265 KDLAMARSLAQIDAGEEALLRSK-ERPIVLLKKADPYLSAIVDDPIAPGIDRIGLMLPYT 323 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 + PL SAN S + I K L + I ++D Sbjct: 324 PLHHLFFDFLDVPLIATSANLSDEPIIREGKE-LREKLGGVIDAVLD 369 >gi|218883731|ref|YP_002428113.1| (NiFe) hydrogenase maturation protein HypF [Desulfurococcus kamchatkensis 1221n] gi|218765347|gb|ACL10746.1| (NiFe) hydrogenase maturation protein HypF [Desulfurococcus kamchatkensis 1221n] Length = 765 Score = 69.3 bits (169), Expect = 7e-10, Method: Composition-based stats. Identities = 40/219 (18%), Positives = 80/219 (36%), Gaps = 21/219 (9%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNP 59 I + +++A + +D G +A V G+ + + + RL KKRP P Sbjct: 197 PINTRDPIKEAAQLIDEGYIVA-----VKGIGGYHIASLATDDEVVHRLRTRKKRPR-KP 250 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 D S+++ +D + + P L+L + + L + L + Sbjct: 251 FAVMGLDTSILELLVYMDERDREILES--PRAPILLLPKHEDSPVSRLVSPGLSHEGVFI 308 Query: 120 ---PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG- 175 P F L+ T L + S N SG+ + + + + + + Sbjct: 309 AYTPLHFLL-LMNTKDKFLIMTSGNVSGEPMC-RDEECAKNRLTSIVDYFLVHDRDIVNR 366 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV 214 ++ +++ + V + R G +K I VEL+ V Sbjct: 367 VDDSVIRKTGGEYVLLRRSRGYAPSWIK--IPVELQREV 403 >gi|154244298|ref|YP_001415256.1| (NiFe) hydrogenase maturation protein HypF [Xanthobacter autotrophicus Py2] gi|154158383|gb|ABS65599.1| (NiFe) hydrogenase maturation protein HypF [Xanthobacter autotrophicus Py2] Length = 763 Score = 69.3 bits (169), Expect = 7e-10, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 54/165 (32%), Gaps = 16/165 (9%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 ++ + +A L AG +AI G+ D+ A+ L K RP PL Sbjct: 198 ADPIERAAALLRAGHILAIK-----GIGGFHIACDATEVDAVALLRARKHRP-TKPLAVM 251 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CG 122 +D++ + P P L+L L + P + +P Sbjct: 252 -ADMATAHGLCLITPEEEAALAH--PSAPILLLSLKPGAPLAPGIAPGQRHLGVMLPYTP 308 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 L+ G PL + S NRS + I + + + Sbjct: 309 LHHLLLAAVGRPLVMTSGNRSSEPQIFRDDEA-RERLAGIVDAFL 352 >gi|325578555|ref|ZP_08148655.1| hydrogenase maturation protein HypF [Haemophilus parainfluenzae ATCC 33392] gi|325159791|gb|EGC71921.1| hydrogenase maturation protein HypF [Haemophilus parainfluenzae ATCC 33392] Length = 755 Score = 69.3 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 60/169 (35%), Gaps = 18/169 (10%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPL 60 T AL++ L G +A V GL DS N + L + K RP PL Sbjct: 199 ATHETALKQTALLLQQGYIVA-----VKGLGGFHLACDSNNQKTVDLLRQRKHRP-TKPL 252 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 V D+ ++ + + L P ++L +I NL+ +P Sbjct: 253 AIMVPDLQFLQNLS--SQETELLTSSAAP---IVLLAKHKVPNIADNIAPNLQEIGVMLP 307 Query: 121 CGFTKKLI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 + L+ PL + SAN SGQ + ++ + + + Sbjct: 308 SNPLQHLLLRAINRPLVMTSANASGQPPVLKNEYAV-EQLADLADFYLC 355 >gi|226322643|ref|ZP_03798161.1| hypothetical protein COPCOM_00415 [Coprococcus comes ATCC 27758] gi|225208980|gb|EEG91334.1| hypothetical protein COPCOM_00415 [Coprococcus comes ATCC 27758] Length = 776 Score = 69.3 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 37/200 (18%), Positives = 70/200 (35%), Gaps = 21/200 (10%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 +A+ + G +AI G+ D+ N A++RL E+KKRPA P Sbjct: 200 DAIIYTRRTIAEGGIVAIK-----GIGGFHLCCDATNEEAVKRLRELKKRPA-KPFAVMA 253 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD-IHPLSTANLKTACFRVPCGF 123 D+ VK+ + + P+ L+ + + +P Sbjct: 254 KDLESVKRECLISEEQEKILTGH-QKPILLLDKKEDGEETLCESIAPGNPKVGVMLPYAP 312 Query: 124 TKKLIETYG----HP--LAIPSANRSGQISITNVKHILSSSICKEIPLII-DGGISKIGL 176 + L+ TY P L + S N SG K + + + ++ +I Sbjct: 313 VQLLLFTYDDGIRMPSFLVMTSGNTSGAPICREDKEAIQE-LSRLCDCMLSHNRKIRIRA 371 Query: 177 ESTIVNVQCEKKVRILRPGG 196 + ++++ + I R G Sbjct: 372 DDSVMDFYKNEPYMIRRSRG 391 >gi|157961849|ref|YP_001501883.1| (NiFe) hydrogenase maturation protein HypF [Shewanella pealeana ATCC 700345] gi|157846849|gb|ABV87348.1| (NiFe) hydrogenase maturation protein HypF [Shewanella pealeana ATCC 700345] Length = 800 Score = 69.3 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 44/217 (20%), Positives = 79/217 (36%), Gaps = 41/217 (18%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 ++AL A L G +AI G+ D+ N ++ RL + K RPA P Sbjct: 207 ADALESAINALIEGKILAIK-----GIGGFHLVCDATNDQSVERLRQRKCRPA-KPFAVM 260 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS----------------------- 100 V +I K S P+TL+ + + Sbjct: 261 VENIEAAAKLVSGSQAEWSTLSSA-ERPITLMRKVTALDAHTKFASDSDFNTNAQPNAQK 319 Query: 101 --TTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSS 157 T ++ L + +P + L+ PL + SAN +G+ IT + + Sbjct: 320 GSTLELSDLVAPEIDRLGIFLPYTPLHQLLLSGVKRPLVMTSANLAGEPIIT-DSQTIKT 378 Query: 158 SICKEIPLIIDGGISKI-GLESTIVNVQCEKKVRILR 193 + I I+D + G + ++V + +K +++LR Sbjct: 379 KLAHVIDNILDHDRPILNGCDDSVVQLINDK-LQVLR 414 >gi|159572301|emb|CAP19076.1| yrdC domain containing (E.coli) [Mus musculus] Length = 103 Score = 69.3 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 9/102 (8%) Query: 101 TTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSI 159 + +++ + R+P F L + +G PLA+ SAN S Q S +V+ + Sbjct: 4 SEELNKDLNPFTRLVGIRIPDHAFMLDLAQMFGGPLALTSANLSSQASSLSVEE--FQDL 61 Query: 160 CKEIPLIIDGGI------SKIGLESTIVNVQCEKKVRILRPG 195 + L+IDGG + L ST+V++ K I+RPG Sbjct: 62 WPHLSLVIDGGPIGDSQSPECRLGSTVVDLSVPGKFGIIRPG 103 >gi|10440179|dbj|BAB15668.1| unnamed protein product [Homo sapiens] Length = 127 Score = 68.9 bits (168), Expect = 9e-10, Method: Composition-based stats. Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 9/103 (8%) Query: 101 TTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSI 159 + +++ R+P F + L + + PLA+ SAN S Q S NV+ + Sbjct: 4 SEELNKDLNPFTPLVGIRIPDHAFMQDLAQMFEGPLALTSANLSSQASSLNVEE--FQDL 61 Query: 160 CKEIPLIIDGGISKIGLE------STIVNVQCEKKVRILRPGG 196 ++ L+IDGG G ST+V++ K I+RPG Sbjct: 62 WPQLSLVIDGGQIGDGQSPECRLGSTVVDLSVPGKFGIIRPGC 104 >gi|325678983|ref|ZP_08158581.1| carbamoyltransferase HypF [Ruminococcus albus 8] gi|324109487|gb|EGC03705.1| carbamoyltransferase HypF [Ruminococcus albus 8] Length = 768 Score = 68.9 bits (168), Expect = 9e-10, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 69/198 (34%), Gaps = 21/198 (10%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 A+ + + G AI G+ D+ N A+ RL E+KKRPA P + Sbjct: 198 AITEVRRAIMEGKIAAIK-----GIGGFHLCCDAHNEDAVARLRELKKRPA-KPFALMMK 251 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125 DI V++ V W P+ ++L STT I L T +P + Sbjct: 252 DIGTVRRECHVRAGQEEYLTG-WQKPI-MLLKKRSTTTISELIAPRNTTVGVMLPYAPVQ 309 Query: 126 KLIE------TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII-DGGISKIGLES 178 LI + L + S N G N + I +++ + + Sbjct: 310 MLIFDYPDGIQFSDCLVMTSGNVRGAPICRNDEDAQKE-IGGFCDIMLSHNRQILLRADD 368 Query: 179 TIVNVQCEKKVRILRPGG 196 ++ + + I R G Sbjct: 369 SVCDWLFGRPYMIRRSRG 386 >gi|237729666|ref|ZP_04560147.1| hydrogenase maturation protein [Citrobacter sp. 30_2] gi|226908272|gb|EEH94190.1| hydrogenase maturation protein [Citrobacter sp. 30_2] Length = 746 Score = 68.9 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 50/153 (32%), Gaps = 20/153 (13%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 AL+ A L AG +A V G+ D+RN A+ L K RPA PL + Sbjct: 202 ALQAAVSRLKAGGIVA-----VKGIGGFHLVCDARNDNAVALLRLRKHRPA-KPLAVMLP 255 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125 + + L P +++ + L +P + Sbjct: 256 SDEGL------PEPARRLL--TTPAAPIVLVQKRYVAALSEGIAPGLTEVGVMLPANPLQ 307 Query: 126 K-LIETYGHPLAIPSANRSGQISITNVKHILSS 157 L++ PL + S N SG+ L Sbjct: 308 HLLLQEMNCPLVMTSGNLSGRPPAITNAQALED 340 >gi|171184872|ref|YP_001793791.1| (NiFe) hydrogenase maturation protein HypF [Thermoproteus neutrophilus V24Sta] gi|170934084|gb|ACB39345.1| (NiFe) hydrogenase maturation protein HypF [Thermoproteus neutrophilus V24Sta] Length = 748 Score = 68.9 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 32/200 (16%), Positives = 68/200 (34%), Gaps = 19/200 (9%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59 + + + +A ++ G +A V G+ + + + L K+RP+ P Sbjct: 198 PVEAEDPISEAARLVEEGRIVA-----VKGVGGFHIFALASDDGVVAELRRRKRRPS-QP 251 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 D+ + VD + L P ++L + PL + L + Sbjct: 252 FAVMALDLETAGRLVVVDGAAAELLTS--PRRPVVLLPKRDGSPASPLVSPGLDREGVFL 309 Query: 120 PCGFTKKLI--ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-L 176 P L+ E S N G+ T+ + +L ++D + + + Sbjct: 310 PYTALHYLLLSEIRDRFAIATSGNIHGEPMCTDRRCVLR---LGVADYVLDHDLEIVHRV 366 Query: 177 ESTIVNVQCEKKVRILRPGG 196 + ++V + V + R G Sbjct: 367 DDSVVRFTAGRPVLLRRGRG 386 >gi|322831871|ref|YP_004211898.1| (NiFe) hydrogenase maturation protein HypF [Rahnella sp. Y9602] gi|321167072|gb|ADW72771.1| (NiFe) hydrogenase maturation protein HypF [Rahnella sp. Y9602] Length = 775 Score = 68.9 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 60/162 (37%), Gaps = 15/162 (9%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 AL A L AG +AI GL D+ A+ RL E K+RP+ PL + Sbjct: 203 ALEYAVAALRAGKIVAIK-----GLGGFHLACDATQQNAVMRLRERKQRPS-KPLAVMLP 256 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFT 124 DI + + + P L P ++ + + + L +P Sbjct: 257 DIGWLAECSDESPPFALREMLESPAAPIVLATQSAMSPLCAAIAPELDEVGLMLPFTPLH 316 Query: 125 KKLIETYGHPLAIPSANRSG-QISITNVKHILSSSICKEIPL 165 L++T PL + S N +G +TN +L + + Sbjct: 317 HLLMQTVDTPLVMTSGNTNGCAPVLTNAAALL--QLDGIADM 356 >gi|89902855|ref|YP_525326.1| (NiFe) hydrogenase maturation protein HypF [Rhodoferax ferrireducens T118] gi|89347592|gb|ABD71795.1| (NiFe) hydrogenase maturation protein HypF [Rhodoferax ferrireducens T118] Length = 789 Score = 68.9 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 40/207 (19%), Positives = 67/207 (32%), Gaps = 35/207 (16%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 + + + L G +AI GL D+RNP A+ RL K R P + Sbjct: 204 DPIERTLHLLQNGKIVAIK-----GLGGFHLACDARNPEAVARLRFTKNR-EEKPFAVML 257 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 ++++ + +A V L + P+ L+ L +P Sbjct: 258 ANVASLAPYAQVSDAERALLES-RERPIVLLRARPGGDAALCGVAPGLLWLGVMLPTTPI 316 Query: 125 KKLI--ETYGHP-------------LAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169 L+ E G P L + SAN G+ + ++ + + +D Sbjct: 317 HFLLLHEAAGRPAGSAWTNKPQAMVLVMTSANPGGEPIVRDMAEA-RTRLVGIADAYLDH 375 Query: 170 GISKIGLESTIVNVQCEKKVRILRPGG 196 IV + VR L PG Sbjct: 376 DRD-------IVARCDDSVVRPLGPGA 395 >gi|262165447|ref|ZP_06033184.1| YrdC family protein [Vibrio mimicus VM223] gi|262025163|gb|EEY43831.1| YrdC family protein [Vibrio mimicus VM223] Length = 95 Score = 68.5 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 3/89 (3%) Query: 109 TANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 KT RVP L+E G PL S G + + S+ + +I+ Sbjct: 2 NEKRKTIGIRVPDNKIALDLLEALGEPLMSTSLILPGNDFTESDPEAIRDSLEHAVDVIL 61 Query: 168 DGGISKIGLESTIVNVQCEKKVRILRPGG 196 +GG +T+++ + ++ + R G Sbjct: 62 NGGYLGQ-QPTTVIDF-SDDEIVVARVGA 88 >gi|294793468|ref|ZP_06758605.1| hypothetical protein gi|294455038|gb|EFG23410.1| [NiFe] hydrogenase maturation protein HypF [Veillonella sp. 3_1_44] Length = 759 Score = 68.5 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 73/190 (38%), Gaps = 9/190 (4%) Query: 17 EFLDAGLPIAIPTETV--YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 E ++ G IAI + V Y L D+RN A++RL + K R + PL V + M + Sbjct: 215 ELINEGSIIAI--KGVGGYHLVCDARNDAAVQRLRKRKNR-SHKPLAIMVGTLDMAIELV 271 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLL-STTDIHPLSTANLKTACFRVPCGFTKKLIETYGH 133 ++ + L + P+ L+ S+ + + + +P +++ Sbjct: 272 HINDVELDILTG-MERPIVLLEKNHNSSVHLSSYVAPDNRMLGVMLPYSPMHEVLLPSDA 330 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIVNVQCEKKVRIL 192 + S N+SG + N + + + + L+ ++V V K I Sbjct: 331 AWVMTSGNKSGDSVLYNDDQAFNE-LGEVADYFLIHNREIYAPLDDSVVVVINNKPRFIR 389 Query: 193 RPGGLEIETL 202 R G E + Sbjct: 390 RSRGYVPEPI 399 >gi|156741827|ref|YP_001431956.1| (NiFe) hydrogenase maturation protein HypF [Roseiflexus castenholzii DSM 13941] gi|156233155|gb|ABU57938.1| (NiFe) hydrogenase maturation protein HypF [Roseiflexus castenholzii DSM 13941] Length = 779 Score = 68.5 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 34/145 (23%), Positives = 55/145 (37%), Gaps = 16/145 (11%) Query: 33 YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPL 92 Y LA D+ + A+ RL K+R A P D+ +++ SV+P L + P+ Sbjct: 240 YHLACDALDSAAVARLRVRKQREA-KPFALMAPDLEAIQRLCSVNPDEEALLESRR-RPI 297 Query: 93 TLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI------ETYGHP--LAIPSANRSG 144 ++LD L + P T +P L+ E G P L + S N S Sbjct: 298 -VLLDALPNVPVAPSVAPGYATLGIMLPYTPLHHLLLRAYAKEAPGRPAVLVMTSGNLSD 356 Query: 145 QISITNVKHILSSSICKEIPLIIDG 169 + ++ + I DG Sbjct: 357 EPIAYRDDDAVA-----RLASIADG 376 >gi|260913681|ref|ZP_05920157.1| hydrogenase maturation protein HypF [Pasteurella dagmatis ATCC 43325] gi|260632220|gb|EEX50395.1| hydrogenase maturation protein HypF [Pasteurella dagmatis ATCC 43325] Length = 770 Score = 68.5 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 59/155 (38%), Gaps = 17/155 (10%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 AL A +L G +A V G+ D+ N AI+ L + K+R A PL Sbjct: 211 ETALSLAVSYLQQGKIVA-----VKGIGGFHLSCDATNSRAIQLLRQRKQR-ATKPLAIM 264 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 V I +K ++ + L + P+ ++L + + +L +P Sbjct: 265 VPSIDWLKNLSTEEKDLLQSSAA----PI-VLLAKEKVSQVCGEIAPHLNEIGVMLPSNP 319 Query: 124 TKK-LIETYGHPLAIPSANRSGQISITNVKHILSS 157 + L+ PL + SAN+ G + + + Sbjct: 320 LQHLLLRQIQTPLVMTSANQRGLPPVLDNQRAFKE 354 >gi|288961729|ref|YP_003452039.1| hydrogenase maturation protein [Azospirillum sp. B510] gi|288914009|dbj|BAI75495.1| hydrogenase maturation protein [Azospirillum sp. B510] Length = 746 Score = 68.5 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 39/212 (18%), Positives = 67/212 (31%), Gaps = 29/212 (13%) Query: 13 RKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 L G +AI GL D+ A+ RL +K+R P V++ Sbjct: 194 EDILAALRDGRIVAIK-----GLGGFHLACDATRADAVERLRRVKQR-NGKPFALMVANT 247 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 +H +D L P+TL+ ++ ++ P L +P L Sbjct: 248 ESAARHVHMDGDERSLLDGVA-RPITLLRRRVNAPELAPDIAPGLAWLGVMLPYTPLHYL 306 Query: 128 I--ETYGHP-------------LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172 + E G P L + SAN G+ + LI+D Sbjct: 307 LFHEAAGRPDGTGWLNEAQDLTLVMTSANPGGEPLAIGNAEA-RERLTGIADLIVDHDRD 365 Query: 173 KI-GLESTIVNVQCEKKVRILRPGGLEIETLK 203 + + ++V + R G E ++ Sbjct: 366 IVIRADDSVVRKLAGAPAFLRRGRGHVPEPIR 397 >gi|13507240|gb|AAK28522.1|AF325829_2 HypF [Nostoc punctiforme PCC 73102] Length = 782 Score = 68.5 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 61/165 (36%), Gaps = 16/165 (9%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGL-----AVDS-RNPTAIRRLYEIKKRPAMNPLICH 63 + + C L G +AI GL A D+ T +++L + KKR P Sbjct: 205 DDVDAVCTLLQKGEIVAIK-----GLSGIHLACDANTQETVVQKLRQRKKR-YHKPFALM 258 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CG 122 DI +++++ +V+ L P+ ++L +S + P + T F +P Sbjct: 259 ARDIEIIEQYCTVNAKEKELLTSSA-API-VLLQAISKKLVPPSVASGQNTLGFMLPYTP 316 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 ++ P+ + S N + + + + + + Sbjct: 317 LHHLILRRMNRPIVLTSGNLADEPQCIDNDEAI-EKLGTIADYFL 360 >gi|296139269|ref|YP_003646512.1| hypothetical protein Tpau_1551 [Tsukamurella paurometabola DSM 20162] gi|296027403|gb|ADG78173.1| conserved hypothetical protein [Tsukamurella paurometabola DSM 20162] Length = 258 Score = 68.5 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 70/178 (39%), Gaps = 18/178 (10%) Query: 8 DSNALRKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 D+ + A E L + G I PT+ Y LA + + + R + K+R P + S Sbjct: 10 DAQSEEAAVELLASEGHLIVSPTKVGYILA--ATDGAGLERKFAAKQRKRTKPGVVLCSS 67 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTL--VLDLL-------STTDIHPLSTANLKTACF 117 + + + A ++ L ++ W + L +L + L+T +T+CF Sbjct: 68 LEQLAELAELNDEVAELYRVHWDQDILLGCILPWRPDALASFPDSVARDLATDLRQTSCF 127 Query: 118 -----RVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 R ++L E + + SAN SG + V + I E LII+ Sbjct: 128 VIRFGRPTENIARRLWEDHRRLMFASSANPSGMGN-RGVVEGIGDRIRDEADLIIEAD 184 >gi|221633836|ref|YP_002523062.1| [NiFe] hydrogenase maturation protein HypF [Thermomicrobium roseum DSM 5159] gi|221155460|gb|ACM04587.1| [NiFe] hydrogenase maturation protein HypF [Thermomicrobium roseum DSM 5159] Length = 758 Score = 68.5 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 39/169 (23%), Positives = 63/169 (37%), Gaps = 19/169 (11%) Query: 9 SNALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 +A+R A +L AG +A V Y LA D+RN A+ L E K R P Sbjct: 209 EDAVRLAASWLVAGKILA-----VKGIGGYHLACDARNAAAVWALRERKFR-KEKPFALM 262 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 V D+ + +D + L P +L L + ++ ++ N +P Sbjct: 263 VRDLDTAAQLVELDDAASALLGS----PARPILLLPARIELPGVAPENRD-FGIMLPYAP 317 Query: 124 TKKLIETYGHP--LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 L+ +G P L + SANRS + + + + G Sbjct: 318 LHYLLFAFGAPAVLVMTSANRSDEPIAFCDDDAF-ARLSGIADAFLVGE 365 >gi|242309350|ref|ZP_04808505.1| hydrogenase maturation protein [Helicobacter pullorum MIT 98-5489] gi|239523921|gb|EEQ63787.1| hydrogenase maturation protein [Helicobacter pullorum MIT 98-5489] Length = 770 Score = 68.2 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 43/177 (24%), Positives = 67/177 (37%), Gaps = 22/177 (12%) Query: 2 QIMSI--TDSNALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKR 54 QI+ T N ++ A L G +A+ Y L D+ N +I+ L + K R Sbjct: 203 QIIPFLKTTPNPIKNAIAALKNGKILAL-----KGIGGYALICDATNQESIQILRDRKNR 257 Query: 55 PAMNPLICHVSDISMVKKHASVDPLSLHLA-KLFWPGPLTLVLDLLSTTDIHP--LSTAN 111 P P D+ M AS++ +L P +VL T + P L N Sbjct: 258 P-KKPFAIMCKDLKMAMSFASLNKKEKNLLTSQIAP----IVLSYAKTKNKLPLHLIAPN 312 Query: 112 LKTACFRVPCGFTKKLI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 L T +P LI PL SAN SG+ I + + ++ + ++ Sbjct: 313 LATLGIILPYAPLHYLIFNEIEFPLIFTSANISGEPIIKDF-YTITQKLQGICDGVL 368 >gi|253699760|ref|YP_003020949.1| (NiFe) hydrogenase maturation protein HypF [Geobacter sp. M21] gi|251774610|gb|ACT17191.1| (NiFe) hydrogenase maturation protein HypF [Geobacter sp. M21] Length = 758 Score = 68.2 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 62/164 (37%), Gaps = 15/164 (9%) Query: 10 NALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 +AL+ E L G +A V Y LAVD+ N A+ RL + KKR P Sbjct: 202 DALQLTLEALAQGKIVA-----VKGVGGYHLAVDAANQAALERLRQRKKRDE-KPFAMLA 255 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 +D+ V++HA L L P+ +++ L T I L F +P Sbjct: 256 ADLDAVRRHAHCSELEGRLLLGV-ERPV-VLMRKLPGTSISDLVAPGNGWFGFMLPGNPL 313 Query: 125 KKLIET-YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 + L+ PL + S N S + L + L + Sbjct: 314 QHLLAAGSRAPLVMTSGNLSDEPIAYRDGEAL-EMLSGIADLFL 356 >gi|327312058|ref|YP_004338955.1| hydrogenase maturation protein HypF [Thermoproteus uzoniensis 768-20] gi|326948537|gb|AEA13643.1| hydrogenase maturation protein HypF [Thermoproteus uzoniensis 768-20] Length = 747 Score = 68.2 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 34/208 (16%), Positives = 75/208 (36%), Gaps = 17/208 (8%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNP 59 ++ ++ + +A E + G +A V Y + + + + + L K+RP+ P Sbjct: 198 AVDAADPVLEAAELVSRGFIVA-----VKGVGGYHIFAKASDDSVVAELRRRKRRPS-QP 251 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 D+ ++ VD S L P ++L + PL + L + Sbjct: 252 FAVMALDLETARRLVEVDESSAELLAS--PQRPIVLLPKRKDSPASPLVSPGLDREGIFL 309 Query: 120 PCGFTKKLIETY--GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-L 176 P + ++ + S N G+ T +K +L + + ++D + + + Sbjct: 310 PYTALQYILLSNIDDRFAIATSGNVHGEPMCTTLKCVL-ERLRGVVDYVLDHDLEIVHRV 368 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKR 204 + ++V I R G +K Sbjct: 369 DDSVVRFTNGVATFIRRSRGYAPAWIKM 396 >gi|298241658|ref|ZP_06965465.1| (NiFe) hydrogenase maturation protein HypF [Ktedonobacter racemifer DSM 44963] gi|297554712|gb|EFH88576.1| (NiFe) hydrogenase maturation protein HypF [Ktedonobacter racemifer DSM 44963] Length = 785 Score = 68.2 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 57/159 (35%), Gaps = 22/159 (13%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 + + A E L G+ +AI GL D+ N A++RL + K+R A P V Sbjct: 211 DQIALAAEQLAQGVILAIK-----GLGGYHLACDACNAEAVQRLRQRKRREA-KPFALMV 264 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 DI + ++ + L + P+ ++LD L + T +P Sbjct: 265 PDIEIAQQLCHIHENEATLLQSHR-RPI-VLLDQLPKNPVASGVAPGYDTLGLMLPYTPL 322 Query: 125 KKLIETY--------GHPL-AIPSANRSGQISITNVKHI 154 L+ + G P+ + S N S + Sbjct: 323 HHLLLRHFRECVGAEGVPVLVMTSGNLSEEPIAYRDADA 361 >gi|145591494|ref|YP_001153496.1| (NiFe) hydrogenase maturation protein HypF [Pyrobaculum arsenaticum DSM 13514] gi|145283262|gb|ABP50844.1| (NiFe) hydrogenase maturation protein HypF [Pyrobaculum arsenaticum DSM 13514] Length = 746 Score = 68.2 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 32/207 (15%), Positives = 74/207 (35%), Gaps = 17/207 (8%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59 + N + KA E + G +A V G+ + + + + L K+RP+ P Sbjct: 197 PVESDNPVLKAAELVSRGYIVA-----VKGIGGYHIFARATDDSVVAELRRRKRRPS-QP 250 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 D+ + ++ +D + L P ++L + I PL L + Sbjct: 251 FAVMALDLRVAERLVHIDERAASLLTS--PQRPIVLLPKKEDSPISPLVAPGLDKEGVFL 308 Query: 120 PCGFTKKLIETYG--HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-L 176 P + L+ + S N G+ ++K L + + + ++D + + + Sbjct: 309 PYTALQYLLLAHTDDKFAVATSGNVHGEPMCKDLKCAL-EKLGRVVDYLLDHDLEIVHRV 367 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLK 203 + +++ + R G ++ Sbjct: 368 DDSVLRFTNGVPTFLRRSRGYAPAWIR 394 >gi|117621137|ref|YP_857023.1| [NiFe] hydrogenase maturation protein HypF [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562544|gb|ABK39492.1| [NiFe] hydrogenase maturation protein HypF [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 812 Score = 68.2 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 54/147 (36%), Gaps = 14/147 (9%) Query: 33 YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPL 92 Y L D+RN ++ RL +K+R PL + ++ K H + L P+ Sbjct: 248 YHLVCDARNKQSVARLRTLKRRER-KPLAVMMGSLAEAKLHVTGCEAEWQLLASQA-RPI 305 Query: 93 TLVLDLLS----------TTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSAN 141 TL+ + T + + +P + L++ PL SAN Sbjct: 306 TLLRKRKNDDRPSKSQLTTAPLAEGIAPGIPYLGVMLPYTPLHQLLLDACAIPLVATSAN 365 Query: 142 RSGQISITNVKHILSSSICKEIPLIID 168 G + + ++ + EI I+D Sbjct: 366 GRGSPILIECEAVIRE-LGSEIDGILD 391 >gi|20094086|ref|NP_613933.1| hydrogenase maturation factor [Methanopyrus kandleri AV19] gi|19887078|gb|AAM01863.1| Hydrogenase maturation factor [Methanopyrus kandleri AV19] Length = 762 Score = 68.2 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 41/207 (19%), Positives = 70/207 (33%), Gaps = 28/207 (13%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 A+R+ACE ++ G +AI G+ + + +L E RP P Sbjct: 203 AIREACELIEEGKIVAIK-----GIGGFHLACKTTEDEPVAKLRERLGRPQ-QPFAVMSG 256 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPL--TLVLDLLSTTDIHPLSTANLKTACFRVP--- 120 + V+ A VD + L GP+ +VL + L L T +P Sbjct: 257 SLDDVRTFAEVDGTAEDLL----TGPVRPIVVLPKKEPFPLSELVAPGLHTVGVMLPYTG 312 Query: 121 -CGFTKKLIETYGHP-LAIPSANRSGQISITNVKHILSSSICKEIPLII--DGGISKIGL 176 + P + + SAN G+ L + + D I+ Sbjct: 313 LHHIMFE--RFLDEPAIVMTSANPPGEPMAIRNSDALRH-LRGIADYYLVHDRRIAARCD 369 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLK 203 +S +V V + + R G E ++ Sbjct: 370 DS-VVRVLDGRPRSLRRSRGYVPEPIE 395 >gi|94263995|ref|ZP_01287796.1| Hydrogenase maturation protein HypF [delta proteobacterium MLMS-1] gi|93455588|gb|EAT05773.1| Hydrogenase maturation protein HypF [delta proteobacterium MLMS-1] Length = 820 Score = 68.2 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 52/161 (32%), Gaps = 15/161 (9%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 A + L G +AI G+ D+ N A+ L K R PL V D+ Sbjct: 235 AAARQLLRQGKIVAIK-----GIGGFHLAVDAANQEAVANLRRRKGR-QHKPLALMVGDL 288 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 + ++ +D + +L P L+ + P + L Sbjct: 289 ATARRLVQLDERAER--ELCSPARPILLALQQPEHGLAPAVAPGHGRFGVMLAYTPLHHL 346 Query: 128 IETYGHPL-AIPSANRSGQISITNVKHILSSSICKEIPLII 167 + T P+ + SAN + + + + + I+ Sbjct: 347 LLTDQLPVLVMTSANPGSEPLCIDDREAI-DRLAGIADAIV 386 >gi|54020289|ref|YP_116178.1| hypothetical protein mhp670 [Mycoplasma hyopneumoniae 232] gi|53987462|gb|AAV27663.1| conserved hypothetical protein [Mycoplasma hyopneumoniae 232] Length = 287 Score = 68.2 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 63/169 (37%), Gaps = 33/169 (19%) Query: 29 TETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS--L 81 T+TV G+A D + ++ IKKR ++ V+++ +K + Sbjct: 144 TDTVPGIASFYKNCD------LDAIFVIKKRDFSKKIVTLVANLEQIKPLIKQENYKKLR 197 Query: 82 HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSAN 141 + K WPG TL+++ S FR+P + P + SAN Sbjct: 198 KITKKIWPGATTLIIENQS----------------FRIPNQVKLLKLLKKNGPAFVTSAN 241 Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 S + ++ +I I + G G S I ++ +K +R Sbjct: 242 ISNE-KPLDIVSAKRKFW--QITKIFNFGPG-TGKVSRIFDLDNKKWIR 286 >gi|320104933|ref|YP_004180524.1| protein tyrosine phosphatase [Isosphaera pallida ATCC 43644] gi|319752215|gb|ADV63975.1| protein tyrosine phosphatase [Isosphaera pallida ATCC 43644] Length = 401 Score = 68.2 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 51/246 (20%), Positives = 87/246 (35%), Gaps = 36/246 (14%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 S+ + + +A L G +PTET Y A + A+ RL ++ P +PL + Sbjct: 15 SVDRLDEVFRAVACLSRGGVAVLPTETGYAAAASALATPALDRLRQLAGLPDDDPLPIAL 74 Query: 65 SDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTAC----- 116 ++ A+ + LA+ WPGPLTL + + + T + Sbjct: 75 RTAEELEDWIATDSRVGRRLARRAWPGPLTLTWEPGAWTAERLPQALTPEQRRRLRGGDG 134 Query: 117 ---FRVPCG-FTKKLIETYGHPLA--------------IPSANRSGQISITNVKHILSSS 158 FR P + LI P+ P + ++ + + + Sbjct: 135 RWTFRSPGHSLPRDLIRWTSGPVVLACLTPDRARQLLESPPSAKTDPPPPRSCESPRGAD 194 Query: 159 ICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISV-ELEYCVDET 217 + I+D G T V + RI +PG +E L+R + L C T Sbjct: 195 L------ILDDGPRFGLQRVTEVTLSTTG-WRITQPGTFSLEQLQRMAGIFVLFVCTGNT 247 Query: 218 STPQSP 223 +SP Sbjct: 248 C--RSP 251 >gi|94266997|ref|ZP_01290644.1| Peptidase M22, glycoprotease:SUA5/yciO/yrdC-like:HypF Zn-finger [delta proteobacterium MLMS-1] gi|93452311|gb|EAT02948.1| Peptidase M22, glycoprotease:SUA5/yciO/yrdC-like:HypF Zn-finger [delta proteobacterium MLMS-1] Length = 677 Score = 68.2 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 52/161 (32%), Gaps = 15/161 (9%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 A + L G +AI G+ D+ N A+ L K R PL V D+ Sbjct: 95 AAARQLLRQGKIVAIK-----GIGGFHLAVDAANQEAVAALRRRKGR-QHKPLALMVGDL 148 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 + ++ +D + +L P L+ + P + L Sbjct: 149 ATARRLVQLDERAER--ELCSPARPILLALQQPEHGLAPAVAPGHGRFGVMLAYTPLHHL 206 Query: 128 IETYGHPL-AIPSANRSGQISITNVKHILSSSICKEIPLII 167 + T P+ + SAN + + + + + I+ Sbjct: 207 LLTDQLPVLVMTSANPGSEPLCIHDREAI-DRLAGIADAIV 246 >gi|317055268|ref|YP_004103735.1| (NiFe) hydrogenase maturation protein HypF [Ruminococcus albus 7] gi|315447537|gb|ADU21101.1| (NiFe) hydrogenase maturation protein HypF [Ruminococcus albus 7] Length = 770 Score = 67.8 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 42/212 (19%), Positives = 68/212 (32%), Gaps = 37/212 (17%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59 I A+ + G A V G+ D+ N A+ RL +KKRPA P Sbjct: 194 DIKGGEAITHLRRAIMEGKIAA-----VKGIGGFHLCCDAHNEEAVSRLRGLKKRPA-KP 247 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 + D+ V++ V W P+ ++L S + + T + Sbjct: 248 FAVMMRDMDTVRRQCHVRDGQEEYLTG-WQKPI-MLLKKRSCCTLSEKIAPDNTTVGVML 305 Query: 120 PCGFTKKLIETY------GHPLAIPSANRSGQISITNVKHILSS---------SICKEIP 164 P + L+ Y L + S N SG + + L S ++I Sbjct: 306 PYAPVQMLLFDYPDDVDMTDCLVMTSGNVSGAPICRSDEDALKEIGSFCDLMLSHNRKIL 365 Query: 165 LIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 L D + + +K I R G Sbjct: 366 LRADDSVC---------DWLFDKPYMIRRSRG 388 >gi|34557188|ref|NP_907003.1| transcriptional regulatory protein HYPF [Wolinella succinogenes DSM 1740] gi|34482904|emb|CAE09903.1| TRANSCRIPTIONAL REGULATORY PROTEIN HYPF [Wolinella succinogenes] Length = 713 Score = 67.8 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 35/172 (20%), Positives = 57/172 (33%), Gaps = 21/172 (12%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 + A+ C+ + G +A V G+ D+ + L E KKRP P Sbjct: 160 AKAIETLCKLIKKGHIVA-----VKGIGGFHLVCDATKNRVVMELRERKKRP-TKPFAVM 213 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWP-GPLTLVLDLLSTTD-----IHPLSTANLKTACF 117 + + K + P+ A + P P+ L+ + T Sbjct: 214 FRSVFEIGKCTELSPIEE--ATILSPERPIVLISKRRPHRLEKFLISCDGVAPRVGTMGV 271 Query: 118 RVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 +P L+E PL SAN SG+ I + K L + +D Sbjct: 272 FLPYSPLHSLLMEQAKIPLVFTSANLSGEPLIRDFKE-LCEKLSGVFDYYLD 322 >gi|218248335|ref|YP_002373706.1| (NiFe) hydrogenase maturation protein HypF [Cyanothece sp. PCC 8801] gi|218168813|gb|ACK67550.1| (NiFe) hydrogenase maturation protein HypF [Cyanothece sp. PCC 8801] Length = 776 Score = 67.8 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 40/194 (20%), Positives = 67/194 (34%), Gaps = 17/194 (8%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICHVS 65 AL+ A + G +AI GL D N TA+ L + K+RP P Sbjct: 203 ALKMAANAIKEGKILAIK-----GLGGFHLMVDGSNHTAVEELRQRKRRP-HKPFALMYP 256 Query: 66 DISMVKKHASVDPLSLHLAKLFWP-GPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123 + K H + PL L P P+ L+ T ++ P N +P Sbjct: 257 SLDSAKSHCKISPLEEQLLTS--PEAPIVLLKRKPHTINLWPFIAPNNPYWGVMLPYTPL 314 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIVN 182 L+ PL S N S + L + L + + ++ ++V Sbjct: 315 HHLLLSDLNFPLVATSGNLSDEPICIEEGEAL-QRLSPIADLFLVHNRPILRPVDDSVVR 373 Query: 183 VQCEKKVRILRPGG 196 + +++ + R G Sbjct: 374 IMGGREMILRRARG 387 >gi|294102036|ref|YP_003553894.1| (NiFe) hydrogenase maturation protein HypF [Aminobacterium colombiense DSM 12261] gi|293617016|gb|ADE57170.1| (NiFe) hydrogenase maturation protein HypF [Aminobacterium colombiense DSM 12261] Length = 766 Score = 67.8 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 32/151 (21%), Positives = 51/151 (33%), Gaps = 13/151 (8%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 AL+ C L G AI GL D N A ++L K R P Sbjct: 203 EEALQICCSRLKKGETAAIK-----GLGGFHLACDPFNSEATQKLRRRKNR-KDKPFALM 256 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 VSD++ K+ + + L P+ ++ + + PL +P Sbjct: 257 VSDLARAKQLVYLTGTAEKLLTSS-KRPI-VLCPAKRNSGLSPLVAPGQNALGIMLPYTP 314 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHI 154 L+ + L + SAN S I++ Sbjct: 315 LHHLLLEHFDALIMTSANMSDAPIISDNNEA 345 >gi|293392064|ref|ZP_06636398.1| HypF protein [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952598|gb|EFE02717.1| HypF protein [Aggregatibacter actinomycetemcomitans D7S-1] Length = 761 Score = 67.8 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 32/148 (21%), Positives = 51/148 (34%), Gaps = 17/148 (11%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 + ++ L G +A V G+ D+ N A++ L E K+RP PL Sbjct: 201 EKTPIKTTALLLQRGRIVA-----VKGIGGFHLACDATNANAVQLLRERKRRP-TKPLAV 254 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 V D+S + + L P ++L + L +P Sbjct: 255 MVPDLSFLTDLTEA--ETTLLTSTAAP---IVLLAKHKVPLLAEQIAPKLNEIGVMLPSN 309 Query: 123 FTKK-LIETYGHPLAIPSANRSGQISIT 149 + L+ PL + SAN S Q I Sbjct: 310 PLQHLLLREANRPLVMTSANPSAQPPIL 337 >gi|149638532|ref|XP_001511974.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus] Length = 148 Score = 67.8 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 10/108 (9%) Query: 96 LDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154 +D PLS+ + R+P F ++L++ + PLA+ SAN S Q S VK Sbjct: 21 VDFRPGLPADPLSS-GSQLVGIRIPRHAFMRQLVQKFSGPLALTSANVSSQASSLTVKE- 78 Query: 155 LSSSICKEIPLIIDGGI------SKIGLESTIVNVQCEKKVRILRPGG 196 + ++ LI+DGG + L ST+V++ K ++RPG Sbjct: 79 -FRDLWPQLSLIVDGGPIGDVQSPECRLGSTVVDLSVPGKFSVIRPGC 125 >gi|261868395|ref|YP_003256317.1| [NiFe] hydrogenase maturation protein HypF [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413727|gb|ACX83098.1| [NiFe] hydrogenase maturation protein HypF [Aggregatibacter actinomycetemcomitans D11S-1] Length = 761 Score = 67.8 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 32/148 (21%), Positives = 51/148 (34%), Gaps = 17/148 (11%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 + ++ L G +A V G+ D+ N A++ L E K+RP PL Sbjct: 201 EKTPIKTTALLLQRGRIVA-----VKGIGGFHLACDATNANAVQLLRERKRRP-TKPLAV 254 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 V D+S + + L P ++L + L +P Sbjct: 255 MVPDLSFLTDLTEA--ETTLLTSTAAP---IVLLAKHKVPLLAEQIAPKLNEIGVMLPSN 309 Query: 123 FTKK-LIETYGHPLAIPSANRSGQISIT 149 + L+ PL + SAN S Q I Sbjct: 310 PLQHLLLREANRPLVMTSANPSAQPPIL 337 >gi|224368273|ref|YP_002602436.1| HypF [Desulfobacterium autotrophicum HRM2] gi|223690989|gb|ACN14272.1| HypF [Desulfobacterium autotrophicum HRM2] Length = 733 Score = 67.4 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 55/161 (34%), Gaps = 17/161 (10%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLIC 62 + A+ A E L+ G +A V GL ++ + A+ L K RP P Sbjct: 166 NKGAITAAGEHLNQGAIVA-----VKGLGGFHLGVNAFDEAAVMALRTRKNRP-HKPFAL 219 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLL----STTDIHPLSTANLKTACFR 118 D+ ++K+ V L F P+ L+ + + Sbjct: 220 MARDLETLRKYTKVTQPEEALLTAF-HRPIVLLEKYKCTDPGGRPLASGLAPGNRRLGIM 278 Query: 119 VPCGFTKKLIETYG-HPLAIPSANRSGQISITNVKHILSSS 158 +P L+ G L + S NRSGQ + LS+ Sbjct: 279 LPYTPLHHLLFETGPEMLVMTSGNRSGQPLSIDNDDALSAF 319 >gi|307250589|ref|ZP_07532531.1| hypothetical protein appser4_13670 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306857405|gb|EFM89519.1| hypothetical protein appser4_13670 [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 767 Score = 67.4 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 57/154 (37%), Gaps = 17/154 (11%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 +A+ A + L G +A V GL D+ I L K RP+ P V Sbjct: 209 SAILAAADKLRQGYIVA-----VKGLGGFHLACDATQAKTIDLLRRRKTRPS-KPFAVMV 262 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 +++ + + + L + P+ ++L T IH L +P Sbjct: 263 PNLNWLTELTEEEKTQLQSSAA----PI-VLLAKHKTKQIHDAVAPQLNEIGVMLPSNPL 317 Query: 125 KKLI-ETYGHPLAIPSANRSGQISITNVKHILSS 157 + L+ + PL + SAN+SG + + S Sbjct: 318 QHLLMKEINKPLVMTSANQSGLPPVLDNDDAFSQ 351 >gi|72080976|ref|YP_288034.1| hypothetical protein MHP7448_0649 [Mycoplasma hyopneumoniae 7448] gi|71914100|gb|AAZ54011.1| conserved hypothetical protein [Mycoplasma hyopneumoniae 7448] Length = 287 Score = 67.4 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 64/169 (37%), Gaps = 33/169 (19%) Query: 29 TETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS--L 81 T+TV G+A D + ++ IKKR ++ V+++ +K + Sbjct: 144 TDTVPGIASFYKNCD------LDAIFVIKKRDFSKKIVTLVANLEQIKPLIKQENYKKLK 197 Query: 82 HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSAN 141 + + WPG TL+++ S FR+P + P + SAN Sbjct: 198 KITRKIWPGATTLIIENQS----------------FRIPNQVKLLKLLKKNGPAFVTSAN 241 Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 S + + V + +I I + G G S I ++ +K +R Sbjct: 242 ISNEKPLDLV--VAKRKFW-QITKIFNFGPG-TGKVSRIFDLDNKKWIR 286 >gi|172035031|ref|YP_001801532.1| hydrogenase maturation protein [Cyanothece sp. ATCC 51142] gi|171696485|gb|ACB49466.1| hydrogenase maturation protein [Cyanothece sp. ATCC 51142] Length = 764 Score = 67.4 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 38/198 (19%), Positives = 71/198 (35%), Gaps = 16/198 (8%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPL 60 D+NAL + L G +A+ GL D R+ A+ +L + K RP P Sbjct: 199 ANDNNALNLSINALKDGKILALK-----GLGGFQLVVDGRHTEAVTQLRQRKHRP-HKPF 252 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 + + +K V+ L + P ++L + + P N +P Sbjct: 253 ALMYASLEAIKNDCEVNGLEETILTS--PQAPIVLLKRKKSQSLSPEIAPNNPYLGVMLP 310 Query: 121 C-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LES 178 L+ P+ S N + + + + L + L + + ++ Sbjct: 311 STPLHHLLLYKLDFPIVATSGNLASEPICIDEQEAL-QRLENIADLFLVHNRPILRPVDD 369 Query: 179 TIVNVQCEKKVRILRPGG 196 ++V V EK++ I R G Sbjct: 370 SVVRVMGEKEMVIRRARG 387 >gi|315426461|dbj|BAJ48094.1| hydrogenase maturation protein HypF [Candidatus Caldiarchaeum subterraneum] Length = 771 Score = 67.4 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 35/213 (16%), Positives = 70/213 (32%), Gaps = 17/213 (7%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 A+ +A + +D G +A V GL + + + L K RP P Sbjct: 205 EAVIEAAKLIDDGCIVA-----VKGLGGYHIAASAVDDDVVALLRRRKNRP-TKPFAIMC 258 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 + + + +L L + P L+L + + PL NLK +P Sbjct: 259 LNADVASLLVELTSPTLELLES--PMRPILLLPMRGDVPVSPLVAPNLKKLGVFLPYTGL 316 Query: 125 KKLIETYG--HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIV 181 L+ ++ + S N + T L + + + + ++ ++V Sbjct: 317 HYLLLSFTKQRYTIMTSGNIYNEPMCTRDDEAL-EKLADIVDFFLMHNREIVNRVDDSVV 375 Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCV 214 +K + R G + ++ E E Sbjct: 376 RFTDQKPTMLRRGRGYAPQWIQIPFKTEREVVA 408 >gi|291276987|ref|YP_003516759.1| transcriptional regulatory protein hypF [Helicobacter mustelae 12198] gi|290964181|emb|CBG40026.1| transcriptional regulatory protein hypF [Helicobacter mustelae 12198] Length = 824 Score = 67.4 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 44/176 (25%), Positives = 71/176 (40%), Gaps = 17/176 (9%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETV--YGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 ++ +++ AL E L +G +AI + V + L D+RN +I L E K RP P Sbjct: 234 ITASNTQALAICRESLRSGKILAI--KGVGGFALICDARNQKSIASLRERKTRP-HKPFA 290 Query: 62 CHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDI-----HPLSTANLKTA 115 D++M K A VD + L+ P +VL + L L Sbjct: 291 LMAKDLAMAKNLAFVDEDEENSLSSKEAP----IVLLKKKENPLLSKENLDLIAPGLAHI 346 Query: 116 CFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 +P L+E P+ SAN+SG+ I + L + + ++D G Sbjct: 347 GIILPYSALHVLLLEGLDFPIIFTSANKSGEPII-HDYETLCQKLGNVVDGVLDYG 401 >gi|307596420|ref|YP_003902737.1| (NiFe) hydrogenase maturation protein HypF [Vulcanisaeta distributa DSM 14429] gi|307551621|gb|ADN51686.1| (NiFe) hydrogenase maturation protein HypF [Vulcanisaeta distributa DSM 14429] Length = 768 Score = 67.4 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 36/203 (17%), Positives = 73/203 (35%), Gaps = 19/203 (9%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPA 56 +++ D ++ + ++ G +AI G+ + N + RL E K+RP Sbjct: 200 EVIETRDP--IKYVVKLIEEGSIVAIK-----GVGGYHISALATNDDVVLRLREKKRRP- 251 Query: 57 MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 P DI + K ++ + + P ++L L + + + L Sbjct: 252 TQPFAVMALDIYVASKLVLINDRARDVLTS--PQRPIVLLPKLPDSPVSKYVSPGLDKEG 309 Query: 117 FRVPCGFTKKLIET--YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI-SK 173 +P LI L + S N Q T++ L + K + ++D + Sbjct: 310 VFLPYTALHYLILMDTRDKFLVMTSGNIHDQPMCTDINCALR-KLGKVVDYVLDHDLRIA 368 Query: 174 IGLESTIVNVQCEKKVRILRPGG 196 ++ ++V + V I R G Sbjct: 369 HRVDDSVVRFTDGELVIIRRSRG 391 >gi|260887891|ref|ZP_05899154.1| [NiFe] hydrogenase maturation protein HypF [Selenomonas sputigena ATCC 35185] gi|330838755|ref|YP_004413335.1| (NiFe) hydrogenase maturation protein HypF [Selenomonas sputigena ATCC 35185] gi|260862397|gb|EEX76897.1| [NiFe] hydrogenase maturation protein HypF [Selenomonas sputigena ATCC 35185] gi|329746519|gb|AEB99875.1| (NiFe) hydrogenase maturation protein HypF [Selenomonas sputigena ATCC 35185] Length = 787 Score = 67.0 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 37/202 (18%), Positives = 71/202 (35%), Gaps = 22/202 (10%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 D A+ +A L AG +A V G+ D+RN A++RL E K RP P Sbjct: 200 DHAAITRARHVLQAGGIVA-----VKGIGGFHLACDARNEAAVQRLREHKSRPQ-KPFAV 253 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 + + V++ + P+ ++L+ + I + + +P Sbjct: 254 MLRGLDAVRRECRLSDAQEAHLDNH-QKPI-ILLEKSGSGKIAASVAPAMPSLGVMLPYT 311 Query: 123 FTKKL-------IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII-DGGISKI 174 L + + L + S N SG + L ++ LI+ ++ Sbjct: 312 PLHLLLFSLPDELADFTDCLVMTSGNPSGAPICRMDEDAL-DALSSIADLILSHDREIRL 370 Query: 175 GLESTIVNVQCEKKVRILRPGG 196 + ++++ I R G Sbjct: 371 RADDSVMDFYDGAPYMIRRSRG 392 >gi|85860208|ref|YP_462410.1| hydrogenase maturation protein [Syntrophus aciditrophicus SB] gi|85723299|gb|ABC78242.1| hydrogenase maturation protein [Syntrophus aciditrophicus SB] Length = 778 Score = 67.0 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 56/164 (34%), Gaps = 15/164 (9%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICHV 64 + + KA E L G +A V GL D+ + A+RRL K R PL V Sbjct: 218 DPIAKAIELLSKGKILA-----VKGLGGFHLAVDATDEGAVRRLRSRKYR-EEKPLAVMV 271 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123 D+ K A + L F P ++ +I P + +P Sbjct: 272 RDLEAASKIAEIGDRERKLL--FSPQRPIVLCRKRGAKEIAPSVAPGVPDRGIMLPYTPL 329 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 L+E L + SAN+S + + L + + Sbjct: 330 HYLLLENTLSALVMTSANQSDEPICIGNREALK-RLKGIADAYL 372 >gi|317970215|ref|ZP_07971605.1| hydrogenase maturation protein [Synechococcus sp. CB0205] Length = 768 Score = 67.0 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 60/164 (36%), Gaps = 21/164 (12%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 L+ A + L AG +A+ G+ D + A+ RL K RP PL Sbjct: 203 EGLQAATQLLRAGGILALQ-----GVGGFQLLADPTHGQALARLRSRKGRPE-KPLALL- 255 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLT--LVLDLLSTTDIHPLSTANLKTACF-RVPC 121 S + +++ L L W PL +++ + + R Sbjct: 256 SSRAALEEICRPSEPELEL----WQSPLAPIVLMRRSPDAGVDARVAGSSPWLGVMRPAS 311 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISI--TNVKHILSSSICKEI 163 G + L+E G PL SANRSG+ N L +S+ + Sbjct: 312 GLQQLLLEHVGSPLVCTSANRSGEPIAADVNADEALLASLADGV 355 >gi|225174989|ref|ZP_03728986.1| (NiFe) hydrogenase maturation protein HypF [Dethiobacter alkaliphilus AHT 1] gi|225169629|gb|EEG78426.1| (NiFe) hydrogenase maturation protein HypF [Dethiobacter alkaliphilus AHT 1] Length = 763 Score = 67.0 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 54/151 (35%), Gaps = 14/151 (9%) Query: 13 RKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 K L AG +A V GL D++NP A++ L K RPA P D Sbjct: 214 EKTLALLKAGHILA-----VKGLGGFHLACDAKNPEAVQTLRYRKGRPA-RPFAVMCRDE 267 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 ++V+++ SVD L P +VL + + T +P L Sbjct: 268 ALVRRYCSVDEKEAELLDS--PEAPIVVLRRRPGSILPKGLAPKAGTLGVMLPYTPLHHL 325 Query: 128 IETYG-HPLAIPSANRSGQISITNVKHILSS 157 + L + S N +G + + L Sbjct: 326 LFDQDLEMLVMTSGNETGLPLAKDTQEALRD 356 >gi|116180920|ref|XP_001220309.1| hypothetical protein CHGG_01088 [Chaetomium globosum CBS 148.51] gi|88185385|gb|EAQ92853.1| hypothetical protein CHGG_01088 [Chaetomium globosum CBS 148.51] Length = 1139 Score = 67.0 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Query: 10 NALRKACEFLDAGLP-IAIPTETVYGLAVDSRNPTAIRRLYEIKK 53 + L++A L +A PTETVYGL D+ A+R +Y K Sbjct: 1088 DPLQEAAHLLRTTDVPVAFPTETVYGLGADATRSAAVRGIYSAKG 1132 >gi|194337081|ref|YP_002018875.1| (NiFe) hydrogenase maturation protein HypF [Pelodictyon phaeoclathratiforme BU-1] gi|194309558|gb|ACF44258.1| (NiFe) hydrogenase maturation protein HypF [Pelodictyon phaeoclathratiforme BU-1] Length = 849 Score = 67.0 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 60/153 (39%), Gaps = 16/153 (10%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICHV 64 + + +A FL G+ +A+ GL D+RN A+RRL E K R A P + Sbjct: 248 DVVAEAVAFLRRGMIVALK-----GLGGFHLAVDARNEAAVRRLRERKGREA-KPFAVMI 301 Query: 65 SDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 D S+V + V L+ P ++L ++++ P + +P Sbjct: 302 RDRSLVHGYCEVSETEMAALSAAQAP---IVLLKKKKSSNLAPSIAPGNERLGVMLPYTP 358 Query: 124 TKKLIETYGHPL-AIPSANRSGQISITNVKHIL 155 L+ + + SAN S + + + L Sbjct: 359 LHTLLFDETLDILVMTSANFSEEPIASENEEAL 391 >gi|94967955|ref|YP_590003.1| (NiFe) hydrogenase maturation protein HypF [Candidatus Koribacter versatilis Ellin345] gi|94550005|gb|ABF39929.1| (NiFe) hydrogenase maturation protein HypF [Candidatus Koribacter versatilis Ellin345] Length = 740 Score = 67.0 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 39/195 (20%), Positives = 65/195 (33%), Gaps = 18/195 (9%) Query: 9 SNALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 + A+ + E L G +A V Y LA D+RN A+R L E K R P Sbjct: 188 AAAIERTAEILRDGKILA-----VKGLGGYHLACDARNGNAVRALRERKYR-KEKPFAVM 241 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 D+ + + + + L P+ L + P + +P Sbjct: 242 ARDVEIAAQIVELSNETRELLTGIA-RPIVLARAKQQFPGVAPENHE----LGVMLPYTP 296 Query: 124 TKKLIETYGHP--LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 L+ G P L + SANRS + + S + +I ++ ++ Sbjct: 297 LHHLLFASGAPEVLVMTSANRSSEPIAYEDADAIESLVGIADAFLIGDRPIARRVDDSVA 356 Query: 182 NVQCEKKVRILRPGG 196 V + R G Sbjct: 357 RVGAYGPAILRRARG 371 >gi|86156904|ref|YP_463689.1| (NiFe) hydrogenase maturation protein HypF [Anaeromyxobacter dehalogenans 2CP-C] gi|85773415|gb|ABC80252.1| (NiFe) hydrogenase maturation protein HypF [Anaeromyxobacter dehalogenans 2CP-C] Length = 773 Score = 67.0 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 41/196 (20%), Positives = 69/196 (35%), Gaps = 18/196 (9%) Query: 9 SNALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 ++ +R L +G A V Y LA D+ P A+R L E K+R PL Sbjct: 213 ADPIRDCAAALRSGGIAA-----VKGLGGYHLACDASAPAAVRTLRERKRR-EEKPLAVM 266 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CG 122 V+D+ + A + P L P ++ + P + Sbjct: 267 VADLDAARALAELSPEEAALLAA--PERPIVLCRRRPDAALAPELAPGSPIVGLMLAYAP 324 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII--DGGISKIGLESTI 180 L+ G PL + SAN S + + L + + L + D I+ +S + Sbjct: 325 LHHLLLADAGVPLVMTSANLSDEPIAFEDEEAL-ARLGGIADLYLVHDRPIASRCDDS-V 382 Query: 181 VNVQCEKKVRILRPGG 196 V + + + R G Sbjct: 383 ARVVAGRPMVMRRSRG 398 >gi|327399469|ref|YP_004340338.1| (NiFe) hydrogenase maturation protein HypF [Hippea maritima DSM 10411] gi|327182098|gb|AEA34279.1| (NiFe) hydrogenase maturation protein HypF [Hippea maritima DSM 10411] Length = 734 Score = 66.6 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 47/198 (23%), Positives = 75/198 (37%), Gaps = 25/198 (12%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 A++K EFL G IA+ V G+ D+ N AI R+ +IK R P V Sbjct: 198 EAIKKLSEFLTKGG-IAL----VKGIGGYHLYCDAFNEDAIERVKQIKNR-YSKPFAVIV 251 Query: 65 SDISMVKKHASVDPLSLHLAK-LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 DI+ + + + L + P +VL L + + +T +P Sbjct: 252 RDINTLSDYCFMSTEEQKLIESQIKP----IVLLRLKSNKLQ-SATMGSPYLGAMLPYTP 306 Query: 124 TKKLIETYG--HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTI 180 LI + L SAN + + I + K ++ E ++ I LE +I Sbjct: 307 LHLLIFHFSKLKFLIATSANFTEKPLIYSDKDAVN---FSETDYVLTNNRRIIRPLEDSI 363 Query: 181 VNVQCEKKV--RILRPGG 196 V + KK+ R R Sbjct: 364 VKLVGNKKLIYRYARGFA 381 >gi|305664300|ref|YP_003860588.1| (NiFe) hydrogenase maturation protein HypF [Ignisphaera aggregans DSM 17230] gi|304378869|gb|ADM28708.1| (NiFe) hydrogenase maturation protein HypF [Ignisphaera aggregans DSM 17230] Length = 777 Score = 66.6 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 34/222 (15%), Positives = 81/222 (36%), Gaps = 18/222 (8%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPL 60 + S+ L+ A + +D G +A V G+ + + + L + K RP P Sbjct: 199 VDSSDPLKDAAKLIDEGYIVA-----VKGIGGFHIAALATDDDVVLMLRKRKNRP-TKPF 252 Query: 61 ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 ++ + + V P S+ L P ++L + + + N+ + Sbjct: 253 AIMCLNLDIASRLVYFVPPSSIDLLTS--PQRPIVLLPKRHDSPVSRYVSPNMDVEGVFL 310 Query: 120 P--CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-L 176 P L+ET L + SAN G+ + + + + + + ++ + + Sbjct: 311 PYTALHYLLLMETRDKFLIMTSANIHGEPMCIDDECVFT-KLRGVVDYVLTHDREIVNRV 369 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETS 218 + ++V +V + R G + ++ I ++ + Sbjct: 370 DDSVVRYTDGIQVILRRGRGYAPKWIRLPIDLKRDVVAFGAE 411 >gi|270159424|ref|ZP_06188080.1| (NiFe) hydrogenase maturation protein HypF [Legionella longbeachae D-4968] gi|289165765|ref|YP_003455903.1| Hydrogenase maturation protein HypF [Legionella longbeachae NSW150] gi|269987763|gb|EEZ94018.1| (NiFe) hydrogenase maturation protein HypF [Legionella longbeachae D-4968] gi|288858938|emb|CBJ12864.1| Hydrogenase maturation protein HypF [Legionella longbeachae NSW150] Length = 741 Score = 66.6 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 39/214 (18%), Positives = 71/214 (33%), Gaps = 29/214 (13%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 ++ K + + G IA+ GL D+RN TA+ +L K R A P V+ Sbjct: 187 SVEKIAQAIIQGEIIALK-----GLGGYQLICDARNQTAVTKLRARKNREA-KPFALMVA 240 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125 ++ K+ +D + P+ L+ +D L T +P Sbjct: 241 NVLSAKRFVQIDNQERDALEN-RTRPIVLLKKRERASDYSAEIAPGLNTLGIMLPYTPVH 299 Query: 126 KLI---------------ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 L+ E L + SAN G+ I + + I+ Sbjct: 300 YLLFNAFAGHTNGSEWLQELQTRVLVVTSANLGGEPLIIEDEDA-EQKLKYIADKIVSYN 358 Query: 171 ISKIG-LESTIVNVQCEKKVRILRPGGLEIETLK 203 I + +++ + K + I R G ++ Sbjct: 359 RQIITRTDDSVIRLVNNKPIFIRRSRGFVPTPIQ 392 >gi|209520674|ref|ZP_03269425.1| SUA5/YciO/YrdC/YwlC [Burkholderia sp. H160] gi|209498874|gb|EDZ98978.1| SUA5/YciO/YrdC/YwlC [Burkholderia sp. H160] Length = 89 Score = 66.6 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 31/83 (37%) Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297 + A+ + +A ++ A L+ ++ D + + I Sbjct: 1 MLAVREAGERVALVARASRAGQWADADGVHFVAAPEDPHVYARELYGLLRALDRANVTRI 60 Query: 298 AFSSIPNHGLGIAINNRLERAAA 320 +P+ IA+N+RL RAAA Sbjct: 61 LIEKLPDTIEWIAVNDRLGRAAA 83 >gi|163848323|ref|YP_001636367.1| (NiFe) hydrogenase maturation protein HypF [Chloroflexus aurantiacus J-10-fl] gi|163669612|gb|ABY35978.1| (NiFe) hydrogenase maturation protein HypF [Chloroflexus aurantiacus J-10-fl] Length = 771 Score = 66.6 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 40/219 (18%), Positives = 71/219 (32%), Gaps = 36/219 (16%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNP 59 S+ ++ L A L G +A V Y LA + + TA+ RL + K+R A P Sbjct: 198 SVDTTDPLIAAATALANGDIVA-----VKGLGGYHLACAADDETAVSRLRQRKQREA-RP 251 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 L V D ++ +DP++ + P ++L + P ++T + Sbjct: 252 LALMVRDEAVAAHLCFIDPVAHTILTS--PARPIVLLPRRPDAPVAPSVAPGMQTLGIML 309 Query: 120 P----CGFTKKLIETYGHP-----LAIPSANRSGQISITNVKH-------ILSSSICKEI 163 P P + + S N S + I + + Sbjct: 310 PYTPLHHLLLAEYARVVGPTRPAAIVLTSGNLSDEPIAYEDDDAVQRLSPIADAMLSHNR 369 Query: 164 PLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202 P+ + S +V V + I R G + Sbjct: 370 PIHMRCDDS-------VVRVAAGGPLLIRRSRGYAPAPI 401 >gi|268590653|ref|ZP_06124874.1| [NiFe] hydrogenase maturation protein HypF [Providencia rettgeri DSM 1131] gi|291314046|gb|EFE54499.1| [NiFe] hydrogenase maturation protein HypF [Providencia rettgeri DSM 1131] Length = 758 Score = 66.6 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 58/156 (37%), Gaps = 15/156 (9%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 N L A + L AG +AI G+ D+ N A+ L K RP PL Sbjct: 200 ENVLVLAAQQLLAGKIVAIK-----GIGGFHLACDASNDQAVEALRVRKCRP-TKPLAVM 253 Query: 64 VSDISMVKKHASVDPLSLHLAKLF-WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 V ++ ++ H PLS L L P +++ + L +P Sbjct: 254 VPSLNWLELH--NMPLSDGLCALLKSPAAPIVLIKNWKNHVLSQYIAPKLAEIGVMLPSN 311 Query: 123 FTKKLI-ETYGHPLAIPSANRSGQISITNVKHILSS 157 + L+ PL + S N SG+ + + + L+ Sbjct: 312 PLQHLLMAQVNCPLVMTSGNVSGKPPVLSEQAALAD 347 >gi|139438804|ref|ZP_01772288.1| Hypothetical protein COLAER_01292 [Collinsella aerofaciens ATCC 25986] gi|133775884|gb|EBA39704.1| Hypothetical protein COLAER_01292 [Collinsella aerofaciens ATCC 25986] Length = 823 Score = 66.2 bits (161), Expect = 6e-09, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 56/177 (31%), Gaps = 26/177 (14%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 + + E L +G +AI GL D+ N A+ L K+R + PL V Sbjct: 222 IERCVELLASGGIVAIK-----GLGGFHLACDAANEQAVAELRRRKRR-SNKPLAVMVRS 275 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLL--STTDIHPLSTANLKTACFRVP---- 120 ++ + +D L P+ L+ + P + A + +P Sbjct: 276 LADAGRLCHIDDAERELLAGSI-RPIVLLRRRAVCESNGGSPDAFALAPSVAHDLPELGV 334 Query: 121 -------CGFTKKLIETYG-HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169 E G H L + S N S + T+ + I + G Sbjct: 335 MLPYTPLQHLLLAAAEACGMHALVMTSGNLSEEPIETDDDLAWEHLVAAGIADALLG 391 >gi|118469275|ref|YP_887045.1| [NiFe] hydrogenase maturation protein HypF [Mycobacterium smegmatis str. MC2 155] gi|118170562|gb|ABK71458.1| [NiFe] hydrogenase maturation protein HypF [Mycobacterium smegmatis str. MC2 155] Length = 763 Score = 66.2 bits (161), Expect = 6e-09, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 62/164 (37%), Gaps = 23/164 (14%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 T +AL++A + L G +A V Y LA D+ N ++ L K+R P Sbjct: 199 ATGEHALQRARQLLATGGIVA-----VKGIGGYHLACDAANRVSVAELRHRKRRG-DKPF 252 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 V+D++ + A V ++ L P +++ S T + P + + + Sbjct: 253 AVMVADLATARAVAEVGDVAARLLCG--PQRPIVLIPRRSETLVCPEVSPHNPDLGVMLA 310 Query: 121 CGFTKKLIETYGHP--------LAIPSANRSGQISITNVKHILS 156 L+ +G P L + SAN SG+ L Sbjct: 311 YSPLHALL--FGLPGDPPGPAALVMTSANLSGEPICFADDDALQ 352 >gi|332666278|ref|YP_004449066.1| acylphosphatase [Haliscomenobacter hydrossis DSM 1100] gi|332335092|gb|AEE52193.1| Acylphosphatase [Haliscomenobacter hydrossis DSM 1100] Length = 760 Score = 66.2 bits (161), Expect = 6e-09, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 55/168 (32%), Gaps = 14/168 (8%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLI 61 + AL+ A L+AG +A V G+ D+ N I L + K+RP+ P Sbjct: 200 NNEAALQTAIAALNAGKIVA-----VKGIGGFLLLADATNANTINLLRQRKQRPS-KPFA 253 Query: 62 CHVSDISMVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 ++ ++ + + L P L + + L+ +P Sbjct: 254 LLYPNLEILASDVILSSEATAALQSSVAPIVLLPLQPQPKSGVQVAALAPGLRRLGVMLP 313 Query: 121 CGFTKKLI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 +LI G PL S N S + L + I+ Sbjct: 314 YAPLLELIGTALGRPLVATSGNLSHTPIEYTNEQAL-ERLSGIADGIL 360 >gi|91780578|ref|YP_555785.1| hydrogenase maturation protein HypF [Burkholderia xenovorans LB400] gi|91693238|gb|ABE36435.1| Hydrogenase maturation protein HypF [Burkholderia xenovorans LB400] Length = 812 Score = 66.2 bits (161), Expect = 6e-09, Method: Composition-based stats. Identities = 32/148 (21%), Positives = 55/148 (37%), Gaps = 16/148 (10%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 + L AC +L G +AI GL + A+ +L +K R P Sbjct: 217 DPLEVACRYLRLGGIVAIK-----GLGGFQLACMATAQAAVTKLRVLKHRAR-KPFALLA 270 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL--STANLKTACFRVPCG 122 D++M +++ SV L + GP+ +++ + T L T F +P Sbjct: 271 RDVTMAERYCSVSNADAALLRSAA-GPI-VIMPAIGRTTAADLSGVAPGTATLGFMLPST 328 Query: 123 FTKKLI-ETYGHPLAIPSANRSGQISIT 149 LI P+ + S N + + T Sbjct: 329 PLHHLIMRALDAPIVLTSGNVADEPQCT 356 >gi|320531009|ref|ZP_08032041.1| [NiFe] hydrogenase maturation protein HypF [Selenomonas artemidis F0399] gi|320136758|gb|EFW28708.1| [NiFe] hydrogenase maturation protein HypF [Selenomonas artemidis F0399] Length = 796 Score = 66.2 bits (161), Expect = 6e-09, Method: Composition-based stats. Identities = 32/231 (13%), Positives = 65/231 (28%), Gaps = 30/231 (12%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 D +A+ + + AG +A V G+ D+R+ A+ RL K R L Sbjct: 216 DGDAIAETRRIVAAGGIVA-----VKGIGGYHLVCDARSEAAVTRLRARKHR-EDKALAV 269 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---------------IHPL 107 V++ V L P+ ++ L + P Sbjct: 270 MAGSPETVRELCEVSADEERLLTS----PVAPIVLLRRHRRDAADAADGAGDAAGGVAPS 325 Query: 108 STANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 +P L+ G + SAN SG+ + ++ Sbjct: 326 VAPGNAYLGVMLPYAPVHLLLLAPGDLWVMTSANLSGEPILYEDAAAERELRDIADAILT 385 Query: 168 DGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETS 218 ++ ++V + ++ + R G + ++ Sbjct: 386 HNREIAHRVDDSVVRMAAGGRMILRRSRGFAPTPVALPFDSKISVLAGGAE 436 >gi|145224560|ref|YP_001135238.1| (NiFe) hydrogenase maturation protein HypF [Mycobacterium gilvum PYR-GCK] gi|145217046|gb|ABP46450.1| (NiFe) hydrogenase maturation protein HypF [Mycobacterium gilvum PYR-GCK] Length = 756 Score = 66.2 bits (161), Expect = 6e-09, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 53/159 (33%), Gaps = 19/159 (11%) Query: 9 SNALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 + LR A L AG +A V Y LA D+ P A+ L K+R P Sbjct: 202 ESGLRAARRMLRAGKIVA-----VKGIGGYHLACDATGPRAVTTLRARKRRG-DKPFAVM 255 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 V D+ ++ A VDP S L P +++ + + + + Sbjct: 256 VPDLDAARRVAEVDPASAALLTG--PARPIVLMPRRAGAAVADAVAPHNPDLGVVLAYAP 313 Query: 124 TKKLIETYGH------PLAIPSANRSGQISITNVKHILS 156 L+ +G L + S N +G+ Sbjct: 314 LHTLLFGFGGDEPAPQTLVMTSGNVAGEPICFTDDDAWQ 352 >gi|315444891|ref|YP_004077770.1| (NiFe) hydrogenase maturation protein HypF [Mycobacterium sp. Spyr1] gi|315263194|gb|ADT99935.1| (NiFe) hydrogenase maturation protein HypF [Mycobacterium sp. Spyr1] Length = 756 Score = 66.2 bits (161), Expect = 6e-09, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 53/159 (33%), Gaps = 19/159 (11%) Query: 9 SNALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 + LR A L AG +A V Y LA D+ P A+ L K+R P Sbjct: 202 ESGLRAARRMLRAGKIVA-----VKGIGGYHLACDATGPRAVTTLRARKRRG-DKPFAVM 255 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 V D+ ++ A VDP S L P +++ + + + + Sbjct: 256 VPDLDAARRVAEVDPASAALLTG--PARPIVLMPRRAGAAVADAVAPHNPDLGVVLAYAP 313 Query: 124 TKKLIETYGH------PLAIPSANRSGQISITNVKHILS 156 L+ +G L + S N +G+ Sbjct: 314 LHTLLFGFGGDEPAPQTLVMTSGNVAGEPICFTDDDAWQ 352 >gi|322379274|ref|ZP_08053660.1| (NiFe) hydrogenase maturation protein HypF [Helicobacter suis HS1] gi|321148311|gb|EFX42825.1| (NiFe) hydrogenase maturation protein HypF [Helicobacter suis HS1] Length = 693 Score = 66.2 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 36/187 (19%), Positives = 69/187 (36%), Gaps = 23/187 (12%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 N L KA E + G + + G+ + N A++ + IK RP PL Sbjct: 195 KNPLEKAIEAILDGEVVGLK-----GIGGFALVCQAENKRAVQTIRTIKARP-FKPLAMM 248 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 + + + ++ L + ++ L + NL + +P Sbjct: 249 LPSLEKALEVVYLNSLEREALSSV----IAPIVLALKKNNHFDHLALNLDSLGVILPYSG 304 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP--LIIDGGISKI-GLESTI 180 L+ L SAN G+ IT++K S+ ++P I+D I G++ ++ Sbjct: 305 LHYLLTRACGSLVFTSANLKGEPIITDLK-----SLQDKLPLKYILDHNRPIIHGIDDSV 359 Query: 181 VNVQCEK 187 V ++ Sbjct: 360 VRCVGQQ 366 >gi|322379853|ref|ZP_08054141.1| transcriptional regulator (hypF) [Helicobacter suis HS5] gi|321147731|gb|EFX42343.1| transcriptional regulator (hypF) [Helicobacter suis HS5] Length = 710 Score = 66.2 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 36/187 (19%), Positives = 69/187 (36%), Gaps = 23/187 (12%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 N L KA E + G + + G+ + N A++ + IK RP PL Sbjct: 182 KNPLEKAIEAILDGEVVGLK-----GIGGFALVCQAENKRAVQTIRTIKARP-FKPLAMM 235 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 + + + ++ L + ++ L + NL + +P Sbjct: 236 LPSLEKALEVVYLNSLEREALSSV----IAPIVLALKKNNHFDHLALNLDSLGVILPYSG 291 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP--LIIDGGISKI-GLESTI 180 L+ L SAN G+ IT++K S+ ++P I+D I G++ ++ Sbjct: 292 LHYLLTRACGSLVFTSANLKGEPIITDLK-----SLQDKLPLKYILDHNRPIIHGIDDSV 346 Query: 181 VNVQCEK 187 V ++ Sbjct: 347 VRCVGQQ 353 >gi|238019571|ref|ZP_04599997.1| hypothetical protein VEIDISOL_01440 [Veillonella dispar ATCC 17748] gi|237864270|gb|EEP65560.1| hypothetical protein VEIDISOL_01440 [Veillonella dispar ATCC 17748] Length = 759 Score = 65.9 bits (160), Expect = 7e-09, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 51/147 (34%), Gaps = 13/147 (8%) Query: 17 EFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 E ++ G IAI G+ D+RN A++RL + K RP PL V + Sbjct: 215 ELINEGSIIAIK-----GIGGYHLVCDARNDAAVQRLRKRKNRP-HKPLAIMVGSLDTAI 268 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLST-TDIHPLSTANLKTACFRVPCGFTKKLIET 130 + + L + P+ L+ + + P + +P +++ Sbjct: 269 ELVHLSDEELDVLTG-MERPIVLLKRNTDSLVRLSPHVAPDNHMLGVMLPYTPMHEVLLP 327 Query: 131 YGHPLAIPSANRSGQISITNVKHILSS 157 + S NRSG + + Sbjct: 328 SDAAWVMTSGNRSGDPVLYDDNQAFEE 354 >gi|209522937|ref|ZP_03271494.1| (NiFe) hydrogenase maturation protein HypF [Arthrospira maxima CS-328] gi|209496524|gb|EDZ96822.1| (NiFe) hydrogenase maturation protein HypF [Arthrospira maxima CS-328] Length = 796 Score = 65.9 bits (160), Expect = 8e-09, Method: Composition-based stats. Identities = 26/154 (16%), Positives = 47/154 (30%), Gaps = 16/154 (10%) Query: 21 AGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75 G +A+ GL D+ N A+ +L K RP P I + + Sbjct: 222 RGQIVAMK-----GLGGFQLLVDATNAAAVEQLRVRKHRP-HKPFAVMYRSIQQIAQVCD 275 Query: 76 VDPLSLHLAKLFWPG-PLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGH 133 + + P P+ L+ L + + +P L+ Sbjct: 276 ISAAEEQWLRS--PQAPIVLLSRLPGASALADNVAPGNPNLGVMLPYTPLHHLLMAELDF 333 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 P+ S N S + T+ L + K + + Sbjct: 334 PIVATSGNFSNEPICTDQTEAL-HRLGKIADIFL 366 >gi|120403350|ref|YP_953179.1| (NiFe) hydrogenase maturation protein HypF [Mycobacterium vanbaalenii PYR-1] gi|119956168|gb|ABM13173.1| (NiFe) hydrogenase maturation protein HypF [Mycobacterium vanbaalenii PYR-1] Length = 777 Score = 65.9 bits (160), Expect = 8e-09, Method: Composition-based stats. Identities = 40/192 (20%), Positives = 66/192 (34%), Gaps = 19/192 (9%) Query: 11 ALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 A+ A L AGL +A V Y LA + + A+ RL K RPA P + Sbjct: 198 AVESAAAALRAGLIVA-----VKGVGGYHLACRADDDDAVARLRRRKNRPA-KPFAVMAA 251 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125 DI ++ VD + P+ L+ +H NL + Sbjct: 252 DIEAARRICHVDDAAARSLTSAA-APIVLLPARAGAVSVH--VAPNLTDLGVMLAYSPVH 308 Query: 126 KLI-ETYGHP-LAIPSANRSGQISITNVKHILSSSICKEIPLII-DGGISKIGLESTIVN 182 L+ P L + SAN+ G + + I ++ + E ++V+ Sbjct: 309 HLLFAEPDMPALVMTSANQGGSPIVFRDGDL--DWIDGLADAVLTHDRPIHVPCEDSVVS 366 Query: 183 VQCEKKVRILRP 194 + + LR Sbjct: 367 IDDDGNEVPLRR 378 >gi|282898409|ref|ZP_06306400.1| Hydrogenase maturation protein HypF [Raphidiopsis brookii D9] gi|281196940|gb|EFA71845.1| Hydrogenase maturation protein HypF [Raphidiopsis brookii D9] Length = 803 Score = 65.9 bits (160), Expect = 8e-09, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 55/177 (31%), Gaps = 27/177 (15%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 + + C L G +AI GL D+ T + +L + KKR P Sbjct: 210 DEVDAVCTLLQKGEIVAIK-----GLGGFHLACDATQETVVEKLRQRKKR-YHKPFALMA 263 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS-------------TTDIHPLSTAN 111 DI+++ ++ + L L P ++L + I Sbjct: 264 RDINIISQYCQISDLEKDLLTS--PAAPIVLLKINPQNNLPHNSIKSQIGNPIARAIAPG 321 Query: 112 LKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 T F +P ++ P+ + S N + + + + + L + Sbjct: 322 QNTLGFMLPYTPLHHLILRRMKVPIVLTSGNIADEPQCIDNSDDIKKKLVSIADLFL 378 >gi|158340830|ref|YP_001521998.1| Ni-Fe hydrogenase maturation protein HypF [Acaryochloris marina MBIC11017] gi|158311071|gb|ABW32684.1| Ni-Fe hydrogenase maturation protein HypF [Acaryochloris marina MBIC11017] Length = 834 Score = 65.9 bits (160), Expect = 8e-09, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 50/156 (32%), Gaps = 17/156 (10%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICHVS 65 A+ A L GL +A V G+ D+RN A++RL KKRP P Sbjct: 233 AIGLAAVALRQGLIVA-----VKGVGGFHLLVDARNSDAVKRLRTRKKRP-NKPFALMYP 286 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS---TTDIHPLSTANLKTACFRVPCG 122 + VK V L L + P ++L I +P Sbjct: 287 SLERVKHTCEVSELEAELLQS--PKAPIVLLQRRHLSLADPIADEVAPGCSHLGVLLPYT 344 Query: 123 FTKKLIET-YGHPLAIPSANRSGQISITNVKHILSS 157 L+ P+ S N +G N + L Sbjct: 345 PIHHLLMADLDFPIVATSGNLNGAPISFNGEKALDD 380 >gi|303326180|ref|ZP_07356623.1| [NiFe] hydrogenase maturation protein HypF [Desulfovibrio sp. 3_1_syn3] gi|302864096|gb|EFL87027.1| [NiFe] hydrogenase maturation protein HypF [Desulfovibrio sp. 3_1_syn3] Length = 835 Score = 65.9 bits (160), Expect = 8e-09, Method: Composition-based stats. Identities = 55/304 (18%), Positives = 100/304 (32%), Gaps = 51/304 (16%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 AL +A + L G +A+ GL D+R+ A++ L K RP PL V Sbjct: 229 EALARAGQVLLDGGVLALK-----GLGGFQLACDARDAAAVQELRRRKNRP-HKPLALMV 282 Query: 65 SDISMVKKHASVDPLSLHLAKLFWP-GPLTL----VLDLLSTTDIHPLSTANLKTACFRV 119 D++ + + P L + P P+ L + T + P + + + Sbjct: 283 GDLATARALCELTPEHEALLQS--PEKPIVLCPRRAVPAGETDPLPPEVAPDTRNVGLML 340 Query: 120 P-----CGFTKKLIETYGHP--LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172 P +L P L + SAN G+ + L+ ++ Sbjct: 341 PYTPLHAALFDRLAPRAPLPPALVMTSANPHGEPLCLGNREALARLDHLADAWLLHDRDI 400 Query: 173 KIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAP 232 + ++ ++++V R LR G + E + + + VD ++ G Y P Sbjct: 401 LVRVDDSVLSVA----PRPLRTGDFKDEA--ASSPATVPHAVDPFFYRRARG-----YVP 449 Query: 233 RS--------------QVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEA 278 R L A + G+ + N + G +E Sbjct: 450 RPVFLPPFGEGGEEGDPTVLGAGAELKGTICLTRGHEAFVGQHIGDLE-NPATLGFYEEV 508 Query: 279 AFNL 282 A +L Sbjct: 509 AAHL 512 >gi|166031967|ref|ZP_02234796.1| hypothetical protein DORFOR_01668 [Dorea formicigenerans ATCC 27755] gi|166028420|gb|EDR47177.1| hypothetical protein DORFOR_01668 [Dorea formicigenerans ATCC 27755] Length = 798 Score = 65.9 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 32/199 (16%), Positives = 63/199 (31%), Gaps = 20/199 (10%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 +A+ A + G +A V G+ D+ +A+ L KKRP P Sbjct: 200 DAVTYARRVIAEGGIVA-----VKGIGGFHLCCDATKESAVELLRTRKKRPV-KPFAVMA 253 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 + V+ + + P+ L+ + + +P Sbjct: 254 RNEEAVRSVCELSEEQEKILTGH-QKPILLLDKKEGVSKLAKSVAPFNPKVGIMLPYAPV 312 Query: 125 KKLIETYG----HP--LAIPSANRSGQISITNVKHILSSSICKEIPLII-DGGISKIGLE 177 + L+ Y P L + S N SG + + + I+ +I + Sbjct: 313 QLLLFQYDDGIQMPDFLVMTSGNISGAPICRDDREA-KEELSHLCDCILSHDRKIRIRAD 371 Query: 178 STIVNVQCEKKVRILRPGG 196 ++++ E+ I R G Sbjct: 372 DSVMDFYREEPYMIRRSRG 390 >gi|291567263|dbj|BAI89535.1| hydrogenase maturation protein HypF [Arthrospira platensis NIES-39] Length = 796 Score = 65.9 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 48/156 (30%), Gaps = 16/156 (10%) Query: 19 LDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 + G +AI GL D+ N A+ +L K RP P I + + Sbjct: 220 IGRGQIVAIK-----GLGGFQLLVDATNAAAVEQLRIRKHRP-HKPFGVMYRSIQQISQV 273 Query: 74 ASVDPLSLHLAKLFWPG-PLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETY 131 + + P P+ L+ + + +P L+ + Sbjct: 274 CDMSAAEEQWLRS--PQAPIVLLSRRRGVSPVADNVAPGNPNLGVMLPYTPLHHLLMAEF 331 Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 P+ S N S + T+ L + K + + Sbjct: 332 DFPIVATSGNFSNEPICTDETEAL-QRLGKIADIFL 366 >gi|315654499|ref|ZP_07907405.1| hydrogenase maturation protein HypF [Mobiluncus curtisii ATCC 51333] gi|315490963|gb|EFU80582.1| hydrogenase maturation protein HypF [Mobiluncus curtisii ATCC 51333] Length = 774 Score = 65.9 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 61/167 (36%), Gaps = 17/167 (10%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 + AL +A + L AG +A V G+ D+RN A+ RL + K R P Sbjct: 218 AAALDEARQRLRAGQILA-----VKGIGGFHLMCDARNEAAVARLRKRKDRG-DKPFAVM 271 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CG 122 V+D + + A +D L + P+ ++ D+ P L +P Sbjct: 272 VADAATAARLARLDADQLRTLQTAA-RPI-VIAPFGQEYDLAPAVAPGLGDVGILLPYAP 329 Query: 123 FTKKLI--ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 +L+ E L S N +G+ + + + + + Sbjct: 330 LHLELLSGECAQMALVATSGNLAGEPLCFTNQDA-AERLAGIVDAFV 375 >gi|94267020|ref|ZP_01290664.1| Hydrogenase maturation protein HypF [delta proteobacterium MLMS-1] gi|93452274|gb|EAT02918.1| Hydrogenase maturation protein HypF [delta proteobacterium MLMS-1] Length = 820 Score = 65.9 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 52/159 (32%), Gaps = 15/159 (9%) Query: 15 ACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 A + L G +AI G+ D+ N A+ L K R PL V D++ Sbjct: 237 ARQLLRQGKIVAIK-----GIGGFHLAVDAANQEAVAALRWRKGR-QHKPLALMVGDLAT 290 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129 ++ +D + +L P L+ + P + L+ Sbjct: 291 ARRLVQLDERAER--ELCSPARPILLALQQPEHGLAPAVAPGHGRFGVMLAYTPLHHLLL 348 Query: 130 TYGHPL-AIPSANRSGQISITNVKHILSSSICKEIPLII 167 T P+ + SAN + + + + + I+ Sbjct: 349 TDQLPVLVMTSANPGSEPLCIHDREAI-DRLAGIADAIV 386 >gi|302344160|ref|YP_003808689.1| (NiFe) hydrogenase maturation protein HypF [Desulfarculus baarsii DSM 2075] gi|301640773|gb|ADK86095.1| (NiFe) hydrogenase maturation protein HypF [Desulfarculus baarsii DSM 2075] Length = 790 Score = 65.5 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 58/159 (36%), Gaps = 19/159 (11%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 ++ L +A L GL +A V GL ++ + A+ RL K+R A PL Sbjct: 208 ADPLARAVRALAEGLIVA-----VKGLGGFHLAANAHDAGAVARLRAGKRRLA-KPLALM 261 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 V+D+ A +D L P+ LV + D+ P LK +P Sbjct: 262 VADLEAAHGLAWLDAEEARLL-ASRQRPIVLV-RVRDGVDLAPGIAPGLKRVGLMLPYTP 319 Query: 124 TKKLI------ETYGHPLAIPSANRSGQISITNVKHILS 156 LI + L + S N S + + ++ Sbjct: 320 LHHLIMDRAQSQHGLRALVMTSGNPSDEPICQDAAQAVA 358 >gi|258646998|ref|ZP_05734467.1| [NiFe] hydrogenase maturation protein HypF [Dialister invisus DSM 15470] gi|260404439|gb|EEW97986.1| [NiFe] hydrogenase maturation protein HypF [Dialister invisus DSM 15470] Length = 769 Score = 65.5 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 57/154 (37%), Gaps = 9/154 (5%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETV--YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 + L+ A + L G I + ++V Y L A++RL +K+R P V Sbjct: 201 SQEELLQSAKDLLFHGEIIMV--KSVGGYNLVCRGDRDDAVQRLRVLKQR-RDKPFALLV 257 Query: 65 SDISMVKKHASVDPLSLHLAKLFWP-GPLTLVLDLLSTTD-IHPLSTANLKTACFRVPCG 122 + + +K + L + P P+ L+ + I P T ++ +P Sbjct: 258 ATVGEAEKLCHISREEKELLES--PQKPIVLLKRRKKSMPLISPAVTELTESLGVFLPPF 315 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILS 156 L+ PL + S N +G+ I + Sbjct: 316 GLYALLAEIKIPLVVTSCNFTGEPIIYKQADAFA 349 >gi|311278320|ref|YP_003940551.1| (NiFe) hydrogenase maturation protein HypF [Enterobacter cloacae SCF1] gi|308747515|gb|ADO47267.1| (NiFe) hydrogenase maturation protein HypF [Enterobacter cloacae SCF1] Length = 739 Score = 65.5 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 31/143 (21%), Positives = 46/143 (32%), Gaps = 20/143 (13%) Query: 21 AGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75 +G +A V GL D+ N A+ L K+RPA PL + D S + Sbjct: 207 SGGIVA-----VKGLGGFHLVCDAGNDEAVATLRARKRRPA-KPLAVMIPDASHL----- 255 Query: 76 VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI-ETYGHP 134 P S P+ LV + + L P + L+ + P Sbjct: 256 --PASARTLLALPAAPIVLVAK-AAVDGVCAGIAPGLAEVGVMRPANPVQHLLMQALKRP 312 Query: 135 LAIPSANRSGQISITNVKHILSS 157 L + S N SG+ Sbjct: 313 LVMTSGNLSGKPPALCNADACDD 335 >gi|323706319|ref|ZP_08117885.1| (NiFe) hydrogenase maturation protein HypF [Thermoanaerobacterium xylanolyticum LX-11] gi|323534371|gb|EGB24156.1| (NiFe) hydrogenase maturation protein HypF [Thermoanaerobacterium xylanolyticum LX-11] Length = 748 Score = 65.5 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 56/156 (35%), Gaps = 17/156 (10%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLI 61 T+ + + E L G +AI G+ ++ + A+ RL + K R PL Sbjct: 200 TNIDPIMAVAEDLRKGKIVAIK-----GIGGFHLAVNALSHEAVLRLRDRKNR-YGKPLA 253 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 + D+ VK+H V P + L P+ L+ + L + +P Sbjct: 254 LMMKDVEDVKRHCHVSPEEIELLNSQR-RPIVLLKKKYEFEGVSD----GLDSVGVMLPY 308 Query: 122 GFTKKLIETY-GHPLAIPSANRSGQISITNVKHILS 156 L+ Y P+ + S N S + + L Sbjct: 309 APIHYLLFKYIDFPVVMTSGNISEEPLCKDNDEALK 344 >gi|302386979|ref|YP_003822801.1| (NiFe) hydrogenase maturation protein HypF [Clostridium saccharolyticum WM1] gi|302197607|gb|ADL05178.1| (NiFe) hydrogenase maturation protein HypF [Clostridium saccharolyticum WM1] Length = 795 Score = 65.5 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 53/158 (33%), Gaps = 14/158 (8%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMN 58 M + A KA L G +A V G+ ++RL ++K R Sbjct: 202 MERKEKEAFEKALTVLSKGGIVA-----VKGIGGFHLVCSPFREDTVKRLRKLKGR-EEK 255 Query: 59 PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 P I + + V L + +VL + + P + Sbjct: 256 PFAVMFPGIQEISRCCLVSAEEKALLES---KARPIVLLSIKQDTMAPSVSNESIYCGAF 312 Query: 119 VPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILS 156 +P + ++ PL + SAN +GQ I + +L+ Sbjct: 313 LPYTPLQHMLTKRLGPLIMTSANIAGQPIIREDESMLA 350 >gi|268318135|ref|YP_003291854.1| (NiFe) hydrogenase maturation protein HypF [Rhodothermus marinus DSM 4252] gi|262335669|gb|ACY49466.1| (NiFe) hydrogenase maturation protein HypF [Rhodothermus marinus DSM 4252] Length = 773 Score = 65.5 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 37/155 (23%), Positives = 55/155 (35%), Gaps = 16/155 (10%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICH 63 ALR+A E + G +A V GL D+RN A+R L K R A P Sbjct: 207 DEALRRAAEAICEGRIVA-----VKGLGGFHLIVDARNEAAVRVLRLRKGREA-KPFALM 260 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD--IHPLSTANLKTACFRVP- 120 ++ V+ HA V L P ++L + + P +P Sbjct: 261 YPSLAAVRAHACVSEAEAALLTS--PAAPIVLLRRTAAGREALAPSVAPGNPYLGIMLPY 318 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHIL 155 L+ G P+ S NRS + + + L Sbjct: 319 TPLHHLLLTELGFPVVATSGNRSEEPICIDEREAL 353 >gi|193213281|ref|YP_001999234.1| (NiFe) hydrogenase maturation protein HypF [Chlorobaculum parvum NCIB 8327] gi|193086758|gb|ACF12034.1| (NiFe) hydrogenase maturation protein HypF [Chlorobaculum parvum NCIB 8327] Length = 776 Score = 65.5 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 38/193 (19%), Positives = 66/193 (34%), Gaps = 19/193 (9%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICHV 64 + + A E L G +AI G+ D+ N A++ L K R P V Sbjct: 219 DEITAAGELLAGGKILAIK-----GIGGFHLAVDASNEQAVQLLRTRKGR-EEKPFAVMV 272 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 D+ + + P L P ++L S + P + +P Sbjct: 273 RDLDTARALCEIGPEEE--VALASPQAPIVLLRKRSDLPLAPSISPGNDRLGVILPYSPL 330 Query: 125 KKLIETYG-HPLAIPSANRSGQISITNVKHILSSSICKEIPLII--DGGISKIGLESTIV 181 L+ G L + SAN S + + + L + + D I++ +S V Sbjct: 331 HWLLLREGPEVLVMTSANFSEEPLVADNAEAL-ERLTGIADAFLMHDRPIARRCDDS--V 387 Query: 182 NVQCEKKVRILRP 194 + VR++R Sbjct: 388 VMSMADAVRLIRR 400 >gi|190150650|ref|YP_001969175.1| carbamoyltransferase HypF [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307263998|ref|ZP_07545599.1| hypothetical protein appser13_14040 [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189915781|gb|ACE62033.1| carbamoyltransferase HypF [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306870687|gb|EFN02430.1| hypothetical protein appser13_14040 [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 761 Score = 65.5 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 60/154 (38%), Gaps = 17/154 (11%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 +A+ +A E L G +A V GL D+ I L K RP+ P V Sbjct: 209 SAILEAVEKLRQGCIVA-----VKGLGGFHLACDATQAKTIDLLRRRKTRPS-KPFAVMV 262 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 ++ + + A + L L + P+ ++L +H L +L +P Sbjct: 263 PNLDWLTELAEEERLLLQSSAA----PI-VLLAKHKVRGVHDLVAPDLAEIGVMLPSNPL 317 Query: 125 KKLIE-TYGHPLAIPSANRSGQISITNVKHILSS 157 + L+ PL + SANRSG N + L S Sbjct: 318 QHLLMHEVNMPLVMTSANRSGLPPALNNQDALDS 351 >gi|313897054|ref|ZP_07830601.1| carbamoyltransferase HypF [Selenomonas sp. oral taxon 137 str. F0430] gi|312974501|gb|EFR39969.1| carbamoyltransferase HypF [Selenomonas sp. oral taxon 137 str. F0430] Length = 814 Score = 65.5 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 32/231 (13%), Positives = 65/231 (28%), Gaps = 30/231 (12%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 D +A+ + + AG +A V G+ D+R+ A+ RL K R L Sbjct: 206 DGDAIAETRRIVAAGGIVA-----VKGIGGYHLVCDARSEAAVTRLRARKHR-EDKALAV 259 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---------------IHPL 107 V++ V L P+ ++ L + P Sbjct: 260 MAGSPETVRELCEVSADEEWLLTS----PVAPIVLLRRHRRDAADAADGAGDADGGVAPS 315 Query: 108 STANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 +P L+ G + SAN SG+ + ++ Sbjct: 316 VAPGNAYLGVMLPYAPVHLLLLAPGDLWVMTSANMSGEPILYEDAAAERELRGIADAILT 375 Query: 168 DGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETS 218 ++ ++V + ++ + R G + ++ Sbjct: 376 HNREIAHRVDDSVVRMAAGGRMILRRSRGFAPTPVALPFDSKISVLAGGAE 426 >gi|91975655|ref|YP_568314.1| (NiFe) hydrogenase maturation protein HypF [Rhodopseudomonas palustris BisB5] gi|91682111|gb|ABE38413.1| (NiFe) hydrogenase maturation protein HypF [Rhodopseudomonas palustris BisB5] Length = 763 Score = 65.1 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 39/209 (18%), Positives = 71/209 (33%), Gaps = 26/209 (12%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + E L AG +A+ + Y L D+ N ++ L K+R A P V+ + + Sbjct: 198 IDEIVERLRAGGIVALKSLGGYHLLCDATNEASVAELRRRKRRDA-KPFAVMVASEASLD 256 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI--E 129 + + D L + P+ L+ D + + P L+ +P L+ Sbjct: 257 RVVAADAAERALLRSV-ERPIVLMQDRGA---LAPSVAPGLRHVGVMLPYTPLHHLLFHA 312 Query: 130 TYGHP-------------LAIPSANRSGQISITNVKHILSSSICKEIPLII--DGGISKI 174 G P L SAN G + + + LI+ D I Sbjct: 313 AAGSPQGRGWQRAPLDLVLVATSANCGGDPIVIDDAE---RKLGGIADLIVSHDRDIVVR 369 Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLK 203 +S ++ + I R G ++ Sbjct: 370 ADDS-VMAISDGGPAFIRRARGFTPRPVR 397 >gi|282899854|ref|ZP_06307816.1| Hydrogenase maturation protein HypF [Cylindrospermopsis raciborskii CS-505] gi|281195336|gb|EFA70271.1| Hydrogenase maturation protein HypF [Cylindrospermopsis raciborskii CS-505] Length = 802 Score = 65.1 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 51/160 (31%), Gaps = 27/160 (16%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 + + C L G +AI GL D+ T + +L + KKR P Sbjct: 210 DEVDAVCTLLRKGEIVAIK-----GLGGFHLACDATQETVVEKLRQRKKR-YHKPFALMA 263 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS-------------TTDIHPLSTAN 111 DI+++ ++ + L L P ++L + I Sbjct: 264 RDINIISQYCQISDLEKDLLTS--PAAPIVLLKINPQNNLPHNSVKSQIGKPIARAIAPG 321 Query: 112 LKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITN 150 T F +P ++ P+ + S N + + + Sbjct: 322 QNTLGFMLPYTPLHHLILRRMNVPIVLTSGNIADEPQCID 361 >gi|256829566|ref|YP_003158294.1| (NiFe) hydrogenase maturation protein HypF [Desulfomicrobium baculatum DSM 4028] gi|256578742|gb|ACU89878.1| (NiFe) hydrogenase maturation protein HypF [Desulfomicrobium baculatum DSM 4028] Length = 766 Score = 65.1 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 54/161 (33%), Gaps = 20/161 (12%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 + +A+R L G +A+ GL ++R+ A++RL + KKR PL Sbjct: 202 NDDAIRATARLLMDGGLVAMK-----GLGGFHLVCNARDQEAVQRLRDRKKR-QDKPLAI 255 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-- 120 V D+ + ++ L P+ L + P + + +P Sbjct: 256 MVRDLDAARSLCALREAEGDLLTS-RQRPIVLA-QARPDRGLAPGLSPDTAYLGVMLPYT 313 Query: 121 --CGFTKKLIETYG-HPLAI--PSANRSGQISITNVKHILS 156 + G P A+ S N S + + L Sbjct: 314 PLHHVLFDELSHCGAGPTALVMTSGNLSSEPICLGNREALQ 354 >gi|78221346|ref|YP_383093.1| hydrogenase maturation protein HypF [Geobacter metallireducens GS-15] gi|78192601|gb|ABB30368.1| Hydrogenase maturation protein HypF [Geobacter metallireducens GS-15] Length = 760 Score = 65.1 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 36/214 (16%), Positives = 66/214 (30%), Gaps = 16/214 (7%) Query: 10 NALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 + + +A L G +A V Y LAVD+ N A+R L K R P Sbjct: 201 DPVEEAAGLLSQGKIVA-----VKGIGGYHLAVDALNDGAVRELRRRKARDE-KPFALMA 254 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123 D++ V+ A D + L P ++L + PL+ +P Sbjct: 255 PDLAAVRTFALPDAVEERLLAA--PEHPIVLLRKRPDNPVSPLAAPANGYFGTMLPYAPL 312 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII-DGGISKIGLESTIVN 182 L+ L + S N S + + + + +++ Sbjct: 313 HHLLLRDRFTALVMTSGNLSDEPIAYRDAEA-RERLAYIADAFLVHDREIHTRTDDSVIR 371 Query: 183 VQCEKKVRILRPGGLEIETLKRAISVELEYCVDE 216 V + + R G ++ + + V Sbjct: 372 VFRGNPLFLRRSRGYVPREVRMPVEIPAVLAVGA 405 >gi|315657593|ref|ZP_07910475.1| hydrogenase maturation protein HypF [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492065|gb|EFU81674.1| hydrogenase maturation protein HypF [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 774 Score = 65.1 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 61/167 (36%), Gaps = 17/167 (10%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 + AL +A + L AG +A V G+ D+RN A+ RL + K R P Sbjct: 218 AAALDEARQRLRAGQILA-----VKGIGGFHLMCDARNEAAVARLRKRKDRG-DKPFAVM 271 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CG 122 V+D + + A +D L + P+ ++ D+ P L +P Sbjct: 272 VADAATAARLARLDADQLRTLQTAA-RPI-VIAPFGQEYDLAPAIAPGLGDVGILLPYAP 329 Query: 123 FTKKLI--ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 +L+ E L S N +G+ + + + + + Sbjct: 330 LHLELLSGECAQMALVATSGNLAGEPLCFTNQDA-AERLAGIVDAFV 375 >gi|167835603|ref|ZP_02462486.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia thailandensis MSMB43] Length = 78 Score = 65.1 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 24/47 (51%) Query: 274 KLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 + A L+ ++ D + + I +P+ IA+N+RL RAAA Sbjct: 26 DPQVYARELYGLLRALDRAQVARILVEKLPDTAEWIAVNDRLGRAAA 72 >gi|318604289|emb|CBY25787.1| [NiFe] hydrogenase metallocenter assembly protein HypF [Yersinia enterocolitica subsp. palearctica Y11] Length = 758 Score = 65.1 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 50/124 (40%), Gaps = 2/124 (1%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LAVD+ N A+ RL E K RP+ PL + D ++ S + L L P + Sbjct: 227 LAVDATNAVAVARLRERKHRPS-KPLAVMLPDADWLQSCVSSADHTALLGLLCSPAAPIV 285 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGHPLAIPSANRSGQISITNVKH 153 ++ + + L +P + L++ PL + S N G+ + + Sbjct: 286 LVAKQPESPLCVAVAPELPEIGVMLPANPLQHLLLQQVARPLVMTSGNGRGKPPALSNQQ 345 Query: 154 ILSS 157 LS+ Sbjct: 346 ALSA 349 >gi|186474345|ref|YP_001863316.1| (NiFe) hydrogenase maturation protein HypF [Burkholderia phymatum STM815] gi|184198304|gb|ACC76266.1| (NiFe) hydrogenase maturation protein HypF [Burkholderia phymatum STM815] Length = 791 Score = 65.1 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 73/185 (39%), Gaps = 9/185 (4%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYG--LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 +ALR A + L GL +A+ ++V G L VD+RNP A+ RL + K+R + P ++ Sbjct: 218 DDALRAAIDALRTGLTVAV--KSVGGFHLVVDARNPDAVARLRDRKRRNS-KPFALMMAS 274 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126 + ++ L + PG ++L L+ + +P Sbjct: 275 VETARRWTDCSELEAQWLRS--PGRPIVLLRKLNGVGLAENVAPRNPNLGVMLPSAPLHY 332 Query: 127 LIET-YGHP-LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 L+ + P L + S N S + L ++++ I ++ +++ Sbjct: 333 LLLSDPDLPALVMTSGNVSEFPIAYRNEEALVRLFEVSDLVLLNDRDIAIRIDDSVIRCS 392 Query: 185 CEKKV 189 ++ Sbjct: 393 NHPQL 397 >gi|222056299|ref|YP_002538661.1| (NiFe) hydrogenase maturation protein HypF [Geobacter sp. FRC-32] gi|221565588|gb|ACM21560.1| (NiFe) hydrogenase maturation protein HypF [Geobacter sp. FRC-32] Length = 756 Score = 65.1 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 37/200 (18%), Positives = 66/200 (33%), Gaps = 15/200 (7%) Query: 10 NALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 + + +A L +G +A V Y LAVD N A+ L KKR P V Sbjct: 200 DPVAEAIRLLKSGKIVA-----VKGTGGYHLAVDPFNGPAVAELRHRKKR-NEKPFALMV 253 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 D++ A +DP+ L P ++L I P + Sbjct: 254 RDLTQAGVLARLDPIEERLLAG--PEKPIVLLCKREGNGIAPQVAPANDYLGLMLASTPL 311 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII-DGGISKIGLESTIVNV 183 L+ L + S N S + + + S+ + + +++ V Sbjct: 312 HHLLLRDFIALVMTSGNVSDEPVAYRDREAV-ESLAGIADYFLGHDRRVHCRNDDSVIRV 370 Query: 184 QCEKKVRILRPGGLEIETLK 203 K + + R G +++ Sbjct: 371 FQGKPIFLRRSRGYVPRSIR 390 >gi|89902945|ref|YP_525416.1| hypothetical protein Rfer_4197 [Rhodoferax ferrireducens T118] gi|89347682|gb|ABD71885.1| expressed protein [Rhodoferax ferrireducens T118] Length = 243 Score = 65.1 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 51/244 (20%), Positives = 86/244 (35%), Gaps = 43/244 (17%) Query: 1 MQIMSITDSNALR-------KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK 53 MQ+++ +L A L AG +P + Y + A+ R+YE+K Sbjct: 1 MQLINRGAEPSLDVMKADALTAFRILKAGGVAVLPFDVSYAIFGH--TSLAVERVYELKN 58 Query: 54 RPAMNPLICHVSDISMVKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTA 110 R P V + + + L K + PL++V H Sbjct: 59 RTPTKPNGV-VGNWDVFNAVMATTERDKALVKCITQDYDLPLSIVAPFRRD---HEWLQT 114 Query: 111 NLKTACFRVPCGFTKKLIETYGH--------------PLAIPSANRSGQISITNVK-HIL 155 + A R G T L+ G PL SAN+S +S + + + Sbjct: 115 SDFGAVRRSTKGDTMDLLLNAGVIHNELARLSWESCTPLFGSSANKS--LSGSKFELEDV 172 Query: 156 SSSICKEIPLIIDGGISKIG----LESTIVNVQCEKKVRILRPGGL---EIETLKRAISV 208 + ++I G SK + STI+ + ++LR GG + E +++ V Sbjct: 173 EDELKAGCDIVIGYGRSKYANKYQIGSTIIEL---PSWKVLRFGGCYERQAEIIRKHFDV 229 Query: 209 ELEY 212 EL Sbjct: 230 ELPP 233 >gi|98152890|ref|YP_611139.1| (NiFe) hydrogenase maturation protein HypF [Sphingopyxis alaskensis RB2256] gi|95105287|gb|ABF54910.1| (NiFe) hydrogenase maturation protein HypF [Sphingopyxis alaskensis RB2256] Length = 793 Score = 64.7 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 39/195 (20%), Positives = 69/195 (35%), Gaps = 22/195 (11%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 + + A L G +AI GL D+ + L K+R Sbjct: 207 DDVDAAGGMLMNGHIVAIK-----GLGGFHLACDATRAEVVADLRMRKRR-RGKAFALMA 260 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GF 123 D+ +++++A L P +VL S + L F +P Sbjct: 261 RDLDVIRRYAEFSDQEAELLAS--PEAP-IVLLRASGEPLAEAVAPGLDRIGFMLPHTPL 317 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICK--EIPLIIDGGISKIGLES-TI 180 L+ P+ + S N SG+ T+ + + + E L+ D I+ +S T Sbjct: 318 HHLLLRRMKRPVVMTSGNLSGRPQCTSNEQA-RAELEGIAEFALMHDRHIANRIDDSVTR 376 Query: 181 VNVQCEKKVRILRPG 195 V++ +VR+LR Sbjct: 377 VDL---GRVRLLRRA 388 >gi|223934717|ref|ZP_03626637.1| (NiFe) hydrogenase maturation protein HypF [bacterium Ellin514] gi|223896672|gb|EEF63113.1| (NiFe) hydrogenase maturation protein HypF [bacterium Ellin514] Length = 791 Score = 64.7 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 31/202 (15%), Positives = 65/202 (32%), Gaps = 22/202 (10%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICHV 64 +AL +A + G +A+ GL D+R A+ L + K+R P Sbjct: 203 DALLQAASAVRHGEILALK-----GLGGFHLIVDARAEDAVLLLRKRKRR-EDKPFALMY 256 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS---------TTDIHPLSTANLKTA 115 + ++ V L L + P+ L+ I + T Sbjct: 257 PSLEAIRLGCEVSELEERLLRSS-ESPIVLLERHSGVAEAQAATNKESIASSIAPHNPTL 315 Query: 116 CFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174 +P L+ G P+ S N + + + + L ++ Sbjct: 316 GVMLPYTPLHHLLLRELGFPVVATSGNLTNEPICIDEREALERLHGVADLFLVHNRPIAR 375 Query: 175 GLESTIVNVQCEKKVRILRPGG 196 ++ ++V + +++ + R G Sbjct: 376 HMDDSVVRIMLGRELVLRRSRG 397 >gi|313904892|ref|ZP_07838264.1| (NiFe) hydrogenase maturation protein HypF [Eubacterium cellulosolvens 6] gi|313470325|gb|EFR65655.1| (NiFe) hydrogenase maturation protein HypF [Eubacterium cellulosolvens 6] Length = 851 Score = 64.7 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 31/149 (20%), Positives = 53/149 (35%), Gaps = 25/149 (16%) Query: 19 LDAGLPIA-----------IPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 L AG +A +PT++ G RR+ E KKR P + Sbjct: 270 LKAGAVVAVKDIGGFHLAFLPTDSEPG-----------RRVREFKKRD-NKPFAVMFPSV 317 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 ++++ V + L P P+ ++L D P +PC + L Sbjct: 318 ESIREYCEVSAKEEEIL-LSDPRPI-VLLRKKPGMDFVPEVCGRSDRIGCMLPCNPLQIL 375 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILS 156 + PL + S NR G+ I + ++ Sbjct: 376 LLKEVGPLVMTSGNRGGEPIIIRDEDMMK 404 >gi|298376326|ref|ZP_06986282.1| Ni/Fe hydrogenase maturation protein HypF [Bacteroides sp. 3_1_19] gi|298267363|gb|EFI09020.1| Ni/Fe hydrogenase maturation protein HypF [Bacteroides sp. 3_1_19] Length = 760 Score = 64.7 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 62/177 (35%), Gaps = 18/177 (10%) Query: 34 GLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFW 88 G+ D+ N A+ RL EIK+R P D+ ++ + + +P+ + W Sbjct: 223 GIGGYHLICDASNERAVARLREIKQRD-TKPFAVMFRDLEHLQVYTATEPMEERCL-VSW 280 Query: 89 PGPLTLVLDLLSTTDIHPLSTANLKTACFR---VPCGFTKKLIETYGHP-LAIPSANRSG 144 P+ L L + + + T +P + G P L + S N S Sbjct: 281 RRPIVL---LRQRSRLASGINPGMHTLGCMLSYMPIHY--DWFARTGIPALVMTSGNLSD 335 Query: 145 QISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIVNVQCEKKVRILRPGGLEIE 200 + + ++ +++ ++ +++ V + I R G E Sbjct: 336 LPIAIT-PEDAEAQLAGKVAVLLHHNRPIHNRVDDSVLQVCGGQPCLIRRSRGYVPE 391 >gi|330952311|gb|EGH52571.1| SUA5/yciO/yrdC [Pseudomonas syringae Cit 7] Length = 108 Score = 64.7 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 3/110 (2%) Query: 82 HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSAN 141 WPGP T ++ + T +T RV T + + PL SAN Sbjct: 1 DRMASTWPGPNTWLVPHQ--NLLPEWITGIHETVALRVTDHPTVRELCALVGPLISTSAN 58 Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 +G+ + + + +I ++ G + S I ++ + VR Sbjct: 59 PAGRPAARSRLRV-EQYFRGQIDGVLGGSLGGRRNPSVIRDIATAQIVRA 107 >gi|162452854|ref|YP_001615221.1| hydrogenase maturation protein HypF [Sorangium cellulosum 'So ce 56'] gi|161163436|emb|CAN94741.1| hydrogenase maturation protein HypF [Sorangium cellulosum 'So ce 56'] Length = 783 Score = 64.7 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 42/215 (19%), Positives = 69/215 (32%), Gaps = 33/215 (15%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNP 59 S + ALR+A + AG +A V GL D+ +P A+ L K+R A P Sbjct: 203 SGSPDGALREAAAAVLAGKVVA-----VKGLGGFHLLVDATSPDAVALLRRRKRRDA-KP 256 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVL------DLLSTTDIHPLSTANLK 113 + V+ V + GP ++ + I Sbjct: 257 FAVMFGSLDAVRGACRVSAAEADALR----GPEAPIVLLRRLSPAAARVAIADAVAPGTP 312 Query: 114 TACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172 +P + ++E G P+ S N S + T+ L + L + Sbjct: 313 RLGALLPYTPLHRLVLELVGRPVVCTSGNLSDEPICTDASDAL-ERLGGIADLFLVHDRP 371 Query: 173 KIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS 207 IV + + R G +E L+RA Sbjct: 372 -------IVRPLDDS---VARVGHAGVELLRRARG 396 >gi|312141482|ref|YP_004008818.1| hydrogenase maturation protein hypf [Rhodococcus equi 103S] gi|311890821|emb|CBH50140.1| putative hydrogenase maturation protein HypF [Rhodococcus equi 103S] Length = 789 Score = 64.7 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 60/175 (34%), Gaps = 26/175 (14%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 D + LR A + + G +A V G+ D+ NP A++ L E K RPA P Sbjct: 210 DDDVLRIAQQAITEGGIVA-----VKGIGGFHLVCDATNPAAVQLLRERKARPA-KPFAV 263 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPL--TLVLDLLSTTDIHPLSTANLKTACFRVP 120 +DI ++ S+D + GP ++L +T + +L +P Sbjct: 264 MAADIRAAREVCSIDDVEA----AALSGPARPIVLLRRRTTDVVAAAVAPSLDDVGILLP 319 Query: 121 CGFTKKLIETYGHP--------LAIPSANRSGQISITNVKHILSSSICKEIPLII 167 L+ L + S NR G+ + + + Sbjct: 320 YAPLHHLLFAPTPGSRVPPPRLLVMTSGNRGGEPLAFTNDDA-RQRLSGIADVFL 373 >gi|56751568|ref|YP_172269.1| hydrogenase maturation protein HypF [Synechococcus elongatus PCC 6301] gi|81301360|ref|YP_401568.1| (NiFe) hydrogenase maturation protein HypF [Synechococcus elongatus PCC 7942] gi|56686527|dbj|BAD79749.1| hydrogenase maturation protein HypF [Synechococcus elongatus PCC 6301] gi|81170241|gb|ABB58581.1| (NiFe) hydrogenase maturation protein HypF [Synechococcus elongatus PCC 7942] Length = 770 Score = 64.7 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 57/155 (36%), Gaps = 14/155 (9%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICH 63 +L +A L G +A+ GL D+ A++RL + K RP PL Sbjct: 208 DRSLTEAIAALQQGKILALK-----GLGGFQLLVDACQTDAVQRLRDRKSRP-HKPLALL 261 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 + D+ V++ + L + P ++L +++ + +P Sbjct: 262 LPDLEAVRQLCQISAAEAELLQS--PAAPIVLLRAIASEPWLAAIAPDCCELGLMLPATP 319 Query: 124 TKKLI-ETYGHPLAIPSANRSGQISITNVKHILSS 157 L+ +G PL S NRSG + L S Sbjct: 320 LHHLLSRDFGQPLVATSGNRSGDPLCWDEVDALES 354 >gi|257060339|ref|YP_003138227.1| (NiFe) hydrogenase maturation protein HypF [Cyanothece sp. PCC 8802] gi|256590505|gb|ACV01392.1| (NiFe) hydrogenase maturation protein HypF [Cyanothece sp. PCC 8802] Length = 780 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 39/194 (20%), Positives = 66/194 (34%), Gaps = 17/194 (8%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICHVS 65 AL+ A + G +AI GL D N TA+ L + K+RP P Sbjct: 203 ALKMAANAIKEGKILAIK-----GLGGFHLMVDGSNHTAVEELRQRKRRP-HKPFALMYP 256 Query: 66 DISMVKKHASVDPLSLHLAKLFWP-GPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123 + K H + L L P P+ L+ T ++ P N +P Sbjct: 257 SLDSAKSHCEISLLEEQLLTS--PEAPIVLLKRKPHTINLWPFVAPNNPYWGVMLPYTPL 314 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIVN 182 L+ PL S N S + L + L + + ++ ++V Sbjct: 315 HHLLLSDLNFPLVATSGNLSDEPICIEEGEAL-QRLSPIADLFLVHNRPILRPVDDSVVR 373 Query: 183 VQCEKKVRILRPGG 196 + +++ + R G Sbjct: 374 IMGGREMILRRARG 387 >gi|304390385|ref|ZP_07372338.1| hydrogenase maturation protein HypF [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304326141|gb|EFL93386.1| hydrogenase maturation protein HypF [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 774 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 60/167 (35%), Gaps = 17/167 (10%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 + AL +A L AG +A V G+ D+RN A+ RL + K R P Sbjct: 218 AAALDEARRRLRAGQILA-----VKGIGGFHLMCDARNEAAVARLRKRKDRG-DKPFAVM 271 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CG 122 V+D + + A +D L + P+ ++ D+ P L +P Sbjct: 272 VADAATAARLARLDADQLRTLQTAA-RPI-VIAPFGQEYDLAPAIAPGLGDVGILLPYAP 329 Query: 123 FTKKLI--ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 +L+ E L S N +G+ + + + + + Sbjct: 330 LHLELLSGECAQMALVATSGNLAGEPLCFTNQDA-AERLAGIVDAFV 375 >gi|238762328|ref|ZP_04623299.1| Carbamoyltransferase hypF [Yersinia kristensenii ATCC 33638] gi|238699313|gb|EEP92059.1| Carbamoyltransferase hypF [Yersinia kristensenii ATCC 33638] Length = 524 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 47/125 (37%), Gaps = 4/125 (3%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLT 93 LAVD+ N A+ RL E K RP PL + D + D +L P+ Sbjct: 227 LAVDATNAAAVARLRERKHRP-TKPLAVMLPDAGWLNSCVQAADNDALFRLLRSSAAPIV 285 Query: 94 LVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGHPLAIPSANRSGQISITNVK 152 LV + L +P + L++ PL + S N SG+ + + Sbjct: 286 LVAK-RPEGPLCAAVAPELPEIGIMLPANPLQHLLLQQVARPLVMTSGNGSGKPPALSNQ 344 Query: 153 HILSS 157 LS+ Sbjct: 345 QALSA 349 >gi|325677304|ref|ZP_08156970.1| hydrogenase maturation protein HypF [Rhodococcus equi ATCC 33707] gi|325552001|gb|EGD21697.1| hydrogenase maturation protein HypF [Rhodococcus equi ATCC 33707] Length = 792 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 39/175 (22%), Positives = 64/175 (36%), Gaps = 26/175 (14%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 D + LR A + + G +A V G+ D+ NP A++ L E K RPA P Sbjct: 213 DDDVLRIAQQAIVEGGIVA-----VKGIGGFHLVCDATNPAAVQLLRERKARPA-KPFAV 266 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGP-LTLVLDLLSTTDIHPLSTA-NLKTACFRVP 120 +DI ++ S+D + GP ++VL TTD+ + A +L +P Sbjct: 267 MAADIRAAREVCSIDDVEA----AALSGPARSIVLLRRRTTDVVAAAVAPSLDDVGILLP 322 Query: 121 CGFTKKLIETYGHP--------LAIPSANRSGQISITNVKHILSSSICKEIPLII 167 L+ L + S NR G+ + + + Sbjct: 323 YAPLHHLLFAPTPGSRVPPPRLLVMTSGNRGGEPLAFTNDDA-RQRLSGIADVFL 376 >gi|305433157|ref|ZP_07402313.1| hydrogenase maturation protein HypF [Campylobacter coli JV20] gi|304443858|gb|EFM36515.1| hydrogenase maturation protein HypF [Campylobacter coli JV20] Length = 728 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 35/166 (21%), Positives = 56/166 (33%), Gaps = 16/166 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 D A + + L G +AI G+ D+ N I+ L K RP P Sbjct: 200 DDEAFKTCAKLLKQGKILAIK-----GMGGFHLMCDAFNLEVIKELRLRKNRP-KKPFAL 253 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 D+S K+ VD L P+ ++ + + I P + P Sbjct: 254 MCRDVSDAKELCFVDEEEEKLLGSIL-APIVILKAKKAFSLIAPDVDKLGIMLAY-TPLH 311 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 L + L SAN SG+ I + ++L + +D Sbjct: 312 LL--LFRYFDGVLVATSANLSGESIIKDEDNLLK-KLGNVFDFYLD 354 >gi|52425601|ref|YP_088738.1| HypF protein [Mannheimia succiniciproducens MBEL55E] gi|52307653|gb|AAU38153.1| HypF protein [Mannheimia succiniciproducens MBEL55E] Length = 770 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 62/174 (35%), Gaps = 19/174 (10%) Query: 2 QIMSITD-SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRP 55 Q I D AL + L+ G IAI G+ D+ N ++ L K+RP Sbjct: 199 QHTKIADHEAALIQTLHLLNEGKIIAIK-----GIGGFHLACDATNRQTVQLLRSRKRRP 253 Query: 56 AMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115 PL V D+ + + + L P ++L + L +L Sbjct: 254 -TKPLAIMVPDLQFLTALSRA--ETKLLTSSAAP---IVLLSKHKVPAVDELIAPHLNEI 307 Query: 116 CFRVPCGFTKK-LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 +P + L++ PL + SAN SGQ + + + + + + Sbjct: 308 GVMLPSNPLQHLLLKAINKPLVMTSANPSGQPPVLDNESAVK-FLQNLADFYLC 360 >gi|149917179|ref|ZP_01905679.1| putative [NiFe] hydrogenase maturation protein [Plesiocystis pacifica SIR-1] gi|149822095|gb|EDM81488.1| putative [NiFe] hydrogenase maturation protein [Plesiocystis pacifica SIR-1] Length = 734 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 66/197 (33%), Gaps = 22/197 (11%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLIC 62 A+ A E L G + + G+ D+R+ A+ L K+RP L Sbjct: 185 PEGAIESAAELLRRGQVLGLK-----GVGGFQLLVDARSEAAVETLRARKRRP-HKALAV 238 Query: 63 HVSDISMVKKHASVD-PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 V+D+ + + P + L GP+ L+ +P Sbjct: 239 MVADLRAAAELVDLTGPAAAALDSPA--GPIVLLPRRGP--QAAEGVAPGQPRLGLMLPT 294 Query: 122 -GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII--DGGISKIGLES 178 +L+ +G P+ S N G+ + + + ++ D I + +S Sbjct: 295 TAAHARLLAAFGGPIVATSGNVHGRPMARTLDEA-RAQLTGVADALLVHDRAILRRCDDS 353 Query: 179 TIVNVQCEKKVRILRPG 195 V E + R LR G Sbjct: 354 --VVQVVEGRPRALRLG 368 >gi|15894097|ref|NP_347446.1| hydrogenase maturation factor (hypF) [Clostridium acetobutylicum ATCC 824] gi|15023699|gb|AAK78786.1|AE007596_7 Hydrogenase maturation factor (hypF) [Clostridium acetobutylicum ATCC 824] gi|325508224|gb|ADZ19860.1| Hydrogenase maturation factor (hypF) [Clostridium acetobutylicum EA 2018] Length = 762 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 42/192 (21%), Positives = 68/192 (35%), Gaps = 16/192 (8%) Query: 19 LDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 L G AI GL D+ N AI++L + K R P V DI KK+ Sbjct: 210 LKEGKIFAIK-----GLGGFQLVCDAENEEAIKKLRQKKNR-QHKPFAVMVKDIETAKKY 263 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI-ETYG 132 SV+ L K P+ ++L+ + I + KT +P L+ Sbjct: 264 CSVNYKEEKLLKSK-VKPI-VILNRSNYNKIPKVIAPYQKTLGVMLPYTPLHYLLFSDDI 321 Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS-KIGLESTIVNVQCEKKVRI 191 L + SAN G + + + + + ++ +IV V ++ I Sbjct: 322 EVLIMTSANAHGLPLEYKNESAI-DKLGNIADYFLQHNRDINVPIDDSIVRVVNGQECVI 380 Query: 192 LRPGGLEIETLK 203 R G +K Sbjct: 381 RRARGYTPNPIK 392 >gi|189347274|ref|YP_001943803.1| (NiFe) hydrogenase maturation protein HypF [Chlorobium limicola DSM 245] gi|189341421|gb|ACD90824.1| (NiFe) hydrogenase maturation protein HypF [Chlorobium limicola DSM 245] Length = 764 Score = 64.3 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 62/159 (38%), Gaps = 16/159 (10%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYG-----LAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 +R+A L AG +A V G LAVD+RN +A++RL + K R P Sbjct: 204 DRVIREASAMLKAGKIVA-----VKGVGGFHLAVDARNGSAVQRLRDQKAR-EEKPFAVM 257 Query: 64 VSDISMVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 + D++ V++ V + L P ++L+ + + + +P Sbjct: 258 MRDLASVRQICVVGSDEAAALRSAEAP---IMLLEKSAGFPLPEIIAPGNDRLGVMLPYS 314 Query: 123 FTKKLIETYGH-PLAIPSANRSGQISITNVKHILSSSIC 160 L+ G + + SAN S + + + + + Sbjct: 315 PLHALLLEEGPDMVVMTSANCSDEPVLHDDADAVRRLVG 353 >gi|148252077|ref|YP_001236662.1| carbamoyl phosphate phosphatase, (NiFe) hydrogenase maturation protein [Bradyrhizobium sp. BTAi1] gi|146404250|gb|ABQ32756.1| carbamoyl phosphate phosphatase, (NiFe) Hydrogenase maturation protein [Bradyrhizobium sp. BTAi1] Length = 824 Score = 64.3 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 51/153 (33%), Gaps = 14/153 (9%) Query: 10 NALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 + + A + G +A V Y LA D+ + RL +K+R P Sbjct: 221 DDVDAAMSLIQKGEIVA-----VKALGGYQLACDATRLDTVERLRLLKRREV-KPFALMA 274 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 D+ ++++ +V P L P ++LD + ++ F +P Sbjct: 275 RDLDVIRRFCAVSPDEEE--ALCSPAAPIVLLDAAGPERLPEAVAPGMRMLGFMLPSTPL 332 Query: 125 KKLI-ETYGHPLAIPSANRSGQISITNVKHILS 156 L+ P+ + S N S + Sbjct: 333 HVLMFRRMPRPVIMTSGNLSDEPQAIGDAEAAR 365 >gi|150008425|ref|YP_001303168.1| hydrogenase maturation factor [Parabacteroides distasonis ATCC 8503] gi|255014160|ref|ZP_05286286.1| hydrogenase maturation factor [Bacteroides sp. 2_1_7] gi|256841591|ref|ZP_05547098.1| NiFe] hydrogenase maturation protein HypF [Parabacteroides sp. D13] gi|149936849|gb|ABR43546.1| hydrogenase maturation factor [Parabacteroides distasonis ATCC 8503] gi|256737434|gb|EEU50761.1| NiFe] hydrogenase maturation protein HypF [Parabacteroides sp. D13] Length = 760 Score = 64.3 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 62/177 (35%), Gaps = 18/177 (10%) Query: 34 GLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFW 88 G+ D+ N A+ RL EIK+R P D+ ++ + + +P+ + W Sbjct: 223 GIGGYHLICDASNERAVARLREIKQRD-TKPFAVMFRDLEHLQVYTATEPMEERCL-VSW 280 Query: 89 PGPLTLVLDLLSTTDIHPLSTANLKTACFR---VPCGFTKKLIETYGHP-LAIPSANRSG 144 P+ L L + + + T +P + G P L + S N S Sbjct: 281 RRPIVL---LRQRSRLASGINPGMHTLGCMLSYMPIHY--DWFARTGIPALVMTSGNLSD 335 Query: 145 QISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIVNVQCEKKVRILRPGGLEIE 200 + + ++ +++ ++ +++ V + I R G E Sbjct: 336 LPIAIT-PEDAEAQLAGKVAILLHHNRPIHNRVDDSVLQVCGGQPCLIRRSRGYVPE 391 >gi|197120926|ref|YP_002132877.1| (NiFe) hydrogenase maturation protein HypF [Anaeromyxobacter sp. K] gi|196170775|gb|ACG71748.1| (NiFe) hydrogenase maturation protein HypF [Anaeromyxobacter sp. K] Length = 773 Score = 64.3 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 39/194 (20%), Positives = 65/194 (33%), Gaps = 14/194 (7%) Query: 9 SNALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 ++ +R L AG A V Y LA D+ P A+R L E K+R PL Sbjct: 213 ADPIRDCAGLLRAGGIAA-----VKGLGGYHLACDASAPAAVRTLRERKRR-EEKPLAVM 266 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CG 122 V+D+ + A V P L P ++ + P + Sbjct: 267 VADLDAARALAEVSPAEAALLTS--PERPIVLCRRRPGAALAPELAPGSPIVGLMLAYAP 324 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 L+ G PL + SAN S + + L+ ++ + ++ Sbjct: 325 LHHLLLADAGVPLVMTSANLSDEPIAFDDGEALARLAGIADLFLVHDRPIASRCDDSVAR 384 Query: 183 VQCEKKVRILRPGG 196 V + + + R G Sbjct: 385 VVAGRPMVMRRSRG 398 >gi|313672690|ref|YP_004050801.1| (nife) hydrogenase maturation protein hypf [Calditerrivibrio nitroreducens DSM 19672] gi|312939446|gb|ADR18638.1| (NiFe) hydrogenase maturation protein HypF [Calditerrivibrio nitroreducens DSM 19672] Length = 742 Score = 64.3 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 55/152 (36%), Gaps = 19/152 (12%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 A+++ +D G +AI GL D+RN AI RL +KKR P V Sbjct: 193 EAIKECASLVDKGEIVAIK-----GLGGYHLICDARNEEAINRLRRLKKRKV-KPFAVMV 246 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 DI ++ + K F+ P+ ++ + + + + K F Sbjct: 247 KDIKYIEDFIT------QELKDFFDSPVAPIVIIDANDLLPSSISPVNKKIGFMKAYTPL 300 Query: 125 KKLIETY--GHPLAIPSANRSGQISITNVKHI 154 +++ + L S N + + + K Sbjct: 301 HQILFHFLKTDFLIATSGNEKDEPIVIDEKDA 332 >gi|254442114|ref|ZP_05055590.1| (NiFe) hydrogenase maturation protein HypF [Verrucomicrobiae bacterium DG1235] gi|198256422|gb|EDY80730.1| (NiFe) hydrogenase maturation protein HypF [Verrucomicrobiae bacterium DG1235] Length = 774 Score = 64.3 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 57/165 (34%), Gaps = 17/165 (10%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICH 63 AL+ A + +G +A+ G+ D+RN AI RL + K R PL Sbjct: 211 DEALKMAEHLVSSGHVLALK-----GVGGFQLIVDARNADAIARLRKCKGRGP-KPLAIM 264 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 D+ + + L L P + ++ L + ++ +PC Sbjct: 265 CPDLGYTRSICHLSALERKLLLS----PASPIVLLKKRSRAFDAVAPGMRDYGVMLPCSP 320 Query: 124 TKKLI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 L+ G+P+ S NRS + + + + + Sbjct: 321 LHHLLMRDLGYPIVATSGNRSEEPICIENEEAI-ERLSDIADAFL 364 >gi|156934227|ref|YP_001438143.1| hypothetical protein ESA_02057 [Cronobacter sakazakii ATCC BAA-894] gi|156532481|gb|ABU77307.1| hypothetical protein ESA_02057 [Cronobacter sakazakii ATCC BAA-894] Length = 748 Score = 64.3 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 49/124 (39%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D++N A+ RL K RP PL ++D + + A A+L P + Sbjct: 223 LACDAQNADAVARLRVRKHRP-TKPLAVMLTDAAGLPDDAR--------AQLLTPAAPIV 273 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI-ETYGHPLAIPSANRSGQISITNVKH 153 +++ + L +P + L+ + G PL + S NRSG+ Sbjct: 274 LVNNAHLPPLCEAIAPGLNETGVMLPANPLQHLLMQGVGRPLVMTSGNRSGEPPALTNAQ 333 Query: 154 ILSS 157 LS Sbjct: 334 ALSQ 337 >gi|296446734|ref|ZP_06888673.1| (NiFe) hydrogenase maturation protein HypF [Methylosinus trichosporium OB3b] gi|296255737|gb|EFH02825.1| (NiFe) hydrogenase maturation protein HypF [Methylosinus trichosporium OB3b] Length = 767 Score = 64.3 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 33/179 (18%), Positives = 60/179 (33%), Gaps = 31/179 (17%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 ++ + + G +A+ G+ D+RN + + L K+R A P Sbjct: 213 ASLIADIVATIRDGGIVALK-----GVGGYHLLCDARNESTVAELRRRKQRDA-KPFAVM 266 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 V++ + + D SL L + P+T+V + P L +P Sbjct: 267 VANEASARCIGDFDAESLRLLRSTA-RPITVVECR---EPLAPSVAPRLSRIGVMLPYAP 322 Query: 124 TKKLI--ETYGHP-------------LAIPSANRSGQISITNVKHILSSSICKEIPLII 167 L+ G P + SAN SG+ I + + + L+I Sbjct: 323 LHHLLFHAAAGAPAGREWREAPQDFIIVATSANVSGEPLIIDDEEA-REKLAPIADLVI 380 >gi|327253114|gb|EGE64768.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli STEC_7v] Length = 792 Score = 63.9 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 34/168 (20%), Positives = 64/168 (38%), Gaps = 13/168 (7%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYG--LAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 S+ + ++ A L G +AI +++ G L D+ N A+ L + K+R A P Sbjct: 211 SVHTDDIVKFAITKLKEGGILAI--KSLGGFHLVADACNENAVNELRQRKRRDA-KPFAV 267 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWP-GPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 V+D+ + A + P + L + P P+ L+ + + +P Sbjct: 268 MVADVESASRIAFIPPCNHKLLES--PQRPIVLLYKR--NVLLASTVAPHNPNIGVMLPS 323 Query: 122 GFTKKLIET-YGHPLAI-PSANRSGQISITNVKHILSSSICKEIPLII 167 + L+ P+ I S N SG + + + + K I Sbjct: 324 TPLQHLLLEDPSLPILIMTSGNISGHPIVFDNDMAIK-QLGKIADYFI 370 >gi|89895223|ref|YP_518710.1| hydrogenase maturation protein hypF [Desulfitobacterium hafniense Y51] gi|219669654|ref|YP_002460089.1| (NiFe) hydrogenase maturation protein HypF [Desulfitobacterium hafniense DCB-2] gi|89334671|dbj|BAE84266.1| hydrogenase maturation protein hypF [Desulfitobacterium hafniense Y51] gi|219539914|gb|ACL21653.1| (NiFe) hydrogenase maturation protein HypF [Desulfitobacterium hafniense DCB-2] Length = 758 Score = 63.9 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 32/151 (21%), Positives = 57/151 (37%), Gaps = 18/151 (11%) Query: 16 CEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 E + G IAI GL D NPTA++RL + K+R A P ++ ++ Sbjct: 200 IEQIARGEIIAIK-----GLGGFHLVCDGGNPTAVQRLRQRKERGA-KPFALMARNLEVI 253 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCGFTKKLIE 129 +++ V L K P+ ++ + ++ P L T +P L+ Sbjct: 254 RRYLKVSLKEEELLKSSA-APIVILERKKESGNVLPDELAPGLHTLGVMLPYTPLHALL- 311 Query: 130 TYGHPL---AIPSANRSGQISITNVKHILSS 157 + + S N SG+ I + + Sbjct: 312 -FDGAFDFLVMTSGNLSGRPLIYTNEEAVRE 341 >gi|323968265|gb|EGB63673.1| hydrogenase maturation protein HypF [Escherichia coli M863] gi|323977841|gb|EGB72927.1| hydrogenase maturation protein HypF [Escherichia coli TW10509] Length = 792 Score = 63.9 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 34/168 (20%), Positives = 64/168 (38%), Gaps = 13/168 (7%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYG--LAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 S+ + ++ A L G +AI +++ G L D+ N A+ L + K+R A P Sbjct: 211 SVHTDDIVKFAITKLKEGGILAI--KSLGGFHLVADACNENAVNELRQRKRRDA-KPFAV 267 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWP-GPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 V+D+ + A + P + L + P P+ L+ + + +P Sbjct: 268 MVADVESASRIAFIPPCNHKLLES--PQRPIVLLYKR--NVLLASTVAPHNPNIGVMLPS 323 Query: 122 GFTKKLIET-YGHPLAI-PSANRSGQISITNVKHILSSSICKEIPLII 167 + L+ P+ I S N SG + + + + K I Sbjct: 324 TPLQHLLLEDPSLPILIMTSGNISGHPIVFDNDMAIK-QLGKIADYFI 370 >gi|317486426|ref|ZP_07945253.1| hydrogenase maturation protein HypF [Bilophila wadsworthia 3_1_6] gi|316922336|gb|EFV43595.1| hydrogenase maturation protein HypF [Bilophila wadsworthia 3_1_6] Length = 841 Score = 63.9 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 40/190 (21%), Positives = 68/190 (35%), Gaps = 30/190 (15%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 A+ + L AG +A V GL D+ + AI L E K RP L Sbjct: 208 QRAIERTAAALRAGNIVA-----VKGLGGFHLVCDATSSEAIALLRERKCRP-HKSLAIM 261 Query: 64 VSDISMVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 V D+ ++ A V D + LA P ++ L S + P ++ + +P Sbjct: 262 VPDLETARRVACVSDAEAAVLASSERP-----IVVLASRGALPPAIAPDVGSIGVMLPYT 316 Query: 122 GFTKKLIETYGH-----PLAIPSANRSGQISITNVKHILSS-------SICKEIPLIIDG 169 L+E + L + S N G+ + L+ + ++I Sbjct: 317 PLHHLLLEAFAALSPLPALVMTSGNAGGEPISLGNREALARLRHIADLFLFHNRDILIRA 376 Query: 170 GISKIGLEST 179 S + +ES+ Sbjct: 377 DDSVVRVESS 386 >gi|148656677|ref|YP_001276882.1| (NiFe) hydrogenase maturation protein HypF [Roseiflexus sp. RS-1] gi|148568787|gb|ABQ90932.1| (NiFe) hydrogenase maturation protein HypF [Roseiflexus sp. RS-1] Length = 776 Score = 63.9 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 52/156 (33%), Gaps = 21/156 (13%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 L +A L G +AI GL ++ + A+ RL K+R A P D Sbjct: 214 LEQAVFALAHGAILAIK-----GLGGYHLACNALDHDAVARLRARKQREA-RPFALMAPD 267 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126 ++ +++ V P L + P+ ++LD L + P T +P Sbjct: 268 LATIRQLCYVKPEEATLLEA-RQRPI-VLLDALPGAPVAPSVAPGYTTLGIMLPYTPLHH 325 Query: 127 LIETYGHP--------LAIPSANRSGQISITNVKHI 154 L+ L + S N S + Sbjct: 326 LLLRAYAAAMPDQPAVLVMTSGNLSDEPIAYRDDDA 361 >gi|312891348|ref|ZP_07750865.1| (NiFe) hydrogenase maturation protein HypF [Mucilaginibacter paludis DSM 18603] gi|311296042|gb|EFQ73194.1| (NiFe) hydrogenase maturation protein HypF [Mucilaginibacter paludis DSM 18603] Length = 789 Score = 63.9 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 41/176 (23%), Positives = 57/176 (32%), Gaps = 22/176 (12%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAM 57 +M + L K L G IA V G+ D++ I+ L K RP+ Sbjct: 196 VMLTNVGDILSKVKILLKQGKIIA-----VKGIGGYILLCDAQQNATIKLLRSRKHRPS- 249 Query: 58 NPLICHVSDISMVKKHASVDPLSLHL-----AKLFWPGPLTLVLDLLSTTDIHPLSTANL 112 P DI ++ + V A + P L L+ I P L Sbjct: 250 KPFAILYPDIKTIQNYFEVSDNEKMFLTSVEAPIVLLHPKRLARRSLAINHIAP----GL 305 Query: 113 KTACFRVPCGFTKKLIET-YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 +P LI YG PL SAN SG I L+ + I+ Sbjct: 306 NRLGVMIPYNPLFDLIARDYGKPLIATSANISGSPIIYRDDDALN-YLFDIADYIV 360 >gi|114321166|ref|YP_742849.1| (NiFe) hydrogenase maturation protein HypF [Alkalilimnicola ehrlichii MLHE-1] gi|114227560|gb|ABI57359.1| (NiFe) hydrogenase maturation protein HypF [Alkalilimnicola ehrlichii MLHE-1] Length = 773 Score = 63.9 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 39/214 (18%), Positives = 73/214 (34%), Gaps = 27/214 (12%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 + L + L +G +AI GL D+ NP A+ RL K+R + P V Sbjct: 209 DVLAATVDRLTSGQILAIK-----GLGGFHLLCDAGNPEAVARLRTRKRR-SEKPFAVMV 262 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 I ++ + P HL P+ L + P + +P Sbjct: 263 PGIEAAERLVRLAPGERHLLAGV-DRPILLAGKRPTVDRQLPGVAPGMPWLGVMLPYTPL 321 Query: 125 KKLI--ETYGHPLAI-------------PSANRSGQISITNVKHILSSSICKEIPLIIDG 169 L+ E G P+ + SAN G+ +T+ + + L++ Sbjct: 322 HYLLFHEAAGRPMGLAWLSGTGQPVWVCTSANPGGEPLVTDNQDAVRRLSGLADALLVHD 381 Query: 170 GISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203 + + ++V + V + R G+ ++ Sbjct: 382 RDILVRCDDSVVRQAEGRAVYLRRGRGVTPSPIR 415 >gi|291614878|ref|YP_003525035.1| (NiFe) hydrogenase maturation protein HypF [Sideroxydans lithotrophicus ES-1] gi|291584990|gb|ADE12648.1| (NiFe) hydrogenase maturation protein HypF [Sideroxydans lithotrophicus ES-1] Length = 767 Score = 63.9 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 40/220 (18%), Positives = 71/220 (32%), Gaps = 31/220 (14%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59 + + + E + AG +A V G+ D+RN A+ RL K+R P Sbjct: 195 PVAADDPIAATAELIQAGKIVA-----VKGIGGFHLVCDARNAAAVARLRNGKQR-EEKP 248 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 V + ++ A L + P+ L+ L+ P L + + Sbjct: 249 FAVMVLNTLSARQCAQFREKDAALLE-TRERPIVLLRQSLACEAALPGIAPGLSSIGLML 307 Query: 120 PCGFTKKLI--ETYGHP-------------LAIPSANRSGQISITNVKHILSSSICKEIP 164 P L+ E G P L + SAN G+ + + S+ Sbjct: 308 PYAPLHYLLFHELLGKPEGADWLQQASPWVLVMTSANPGGEPLVKDDAEA-RESLTGLAD 366 Query: 165 LII--DGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202 + D I +S ++ Q + + R G + Sbjct: 367 AFLTHDRDILHRCDDS-VMKWQGSAPIFLRRARGYTPRRI 405 >gi|123443788|ref|YP_001007759.1| hydrogenase maturation protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090749|emb|CAL13626.1| hydrogenase maturation protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 758 Score = 63.9 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 2/124 (1%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LAVD+ N A+ RL E K RP+ PL + D ++ S + L L P + Sbjct: 227 LAVDATNAAAVARLRERKHRPS-KPLAVMLPDADWLQSCVSSADHTALLGLLRSPAAPIV 285 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++ + + L +P L++ PL + S N G+ + + Sbjct: 286 LVAKQPESPLCAAVAPELPEIGVMLPATPLQHLLLQQVARPLVMTSGNGRGKPPALSNQQ 345 Query: 154 ILSS 157 LS+ Sbjct: 346 ALSA 349 >gi|307257396|ref|ZP_07539166.1| hypothetical protein appser10_13940 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864246|gb|EFM96159.1| hypothetical protein appser10_13940 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 765 Score = 63.9 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 60/154 (38%), Gaps = 17/154 (11%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 +A+ +A E L G +A V GL D+ I L K RP+ P V Sbjct: 209 SAILEAVEKLRQGYIVA-----VKGLGGFHLACDATQAKTIDLLRHRKVRPS-KPFAVMV 262 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 ++ + + A + L L + P+ ++L +H L +L +P Sbjct: 263 PNLDWLTELAEEERLLLQSSAA----PI-VLLAKHKVRGVHDLVAPDLAEIGVMLPSNPL 317 Query: 125 KKLIE-TYGHPLAIPSANRSGQISITNVKHILSS 157 + L+ PL + SANRSG N + L S Sbjct: 318 QHLLMHEVNMPLVMTSANRSGLPPALNNQDALDS 351 >gi|258543871|ref|ZP_05704105.1| conserved hypothetical protein [Cardiobacterium hominis ATCC 15826] gi|258520877|gb|EEV89736.1| conserved hypothetical protein [Cardiobacterium hominis ATCC 15826] Length = 258 Score = 63.9 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 36/197 (18%), Positives = 73/197 (37%), Gaps = 24/197 (12%) Query: 22 GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81 G I PT+ Y + + + + R ++ K+R P + + ++ A ++P Sbjct: 23 GGVIVCPTKVGYII--MATDKAGLERKFDAKERKRNKPGVVLCGSMEQLRALAQMNPEIE 80 Query: 82 HLAKLFWPGPLTL--VLDLLSTTDIH-------PLSTANLKTACFRVPCGF-----TKKL 127 + W + L +L + L T+CF + G + L Sbjct: 81 AFYQKHWDADILLGCILPWRADAKAALPQDGRDELMMDGRGTSCFVIKFGVPGEQLAEHL 140 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 T G + SAN SG+ + V+ + I ++ L+I+ + S +Q +K Sbjct: 141 WRTEGKMIYASSANPSGKGNRGKVEG-IGERIASKVDLVIEADDY---VAS----IQPDK 192 Query: 188 KVRILRPGGLEIETLKR 204 V G+ + + + Sbjct: 193 TVETRYEQGVMVSMVDK 209 >gi|307246250|ref|ZP_07528331.1| hypothetical protein appser1_14540 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307255234|ref|ZP_07537049.1| hypothetical protein appser9_14690 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259668|ref|ZP_07541392.1| hypothetical protein appser11_14660 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306852859|gb|EFM85083.1| hypothetical protein appser1_14540 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306861783|gb|EFM93762.1| hypothetical protein appser9_14690 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866313|gb|EFM98177.1| hypothetical protein appser11_14660 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 761 Score = 63.9 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 60/154 (38%), Gaps = 17/154 (11%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 +A+ +A E L G +A V GL D+ I L K RP+ P V Sbjct: 209 SAILEAVEKLRQGYIVA-----VKGLGGFHLACDATQAKTIDLLRHRKVRPS-KPFAVMV 262 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 ++ + + A + L L + P+ ++L +H L +L +P Sbjct: 263 PNLDWLTELAEEERLLLQSSAA----PI-VLLAKHKVRGVHDLVAPDLAEIGVMLPSNPL 317 Query: 125 KKLIE-TYGHPLAIPSANRSGQISITNVKHILSS 157 + L+ PL + SANRSG N + L S Sbjct: 318 QHLLMHEVNMPLVMTSANRSGLPPALNNQDALDS 351 >gi|317154067|ref|YP_004122115.1| (NiFe) hydrogenase maturation protein HypF [Desulfovibrio aespoeensis Aspo-2] gi|316944318|gb|ADU63369.1| (NiFe) hydrogenase maturation protein HypF [Desulfovibrio aespoeensis Aspo-2] Length = 775 Score = 63.5 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 43/210 (20%), Positives = 67/210 (31%), Gaps = 25/210 (11%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 A+R E L G A V GL D+ + A+ L K RP PL Sbjct: 204 DEAIRMLAEALAQGRLAA-----VKGLGGFHLVCDAASDKAVAELRRRKHRP-DKPLAVM 257 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP--- 120 ++D+ V++ A V P P+ L + PL + +P Sbjct: 258 LADLEAVRQLAVVVPAEEPWLTGIR-RPIVLAAKREP-LAVSPLIAPDTNFLGVMLPYTP 315 Query: 121 -CGFTKKLIETYGH----PLAIPSANRSGQISITNVKHILSSSICKEIPLII--DGGISK 173 G L + S N S + + L + + + L + D I Sbjct: 316 LHHILLDTFAQAGGSEIPALVMTSGNLSSEPIALGNREAL-ARLGELADLFLLHDRDILI 374 Query: 174 IGLESTI-VNVQCEKKVRILRPGGLEIETL 202 +S + VN V + R G E + Sbjct: 375 RTDDSVVRVNPASGGPVLLRRARGFAPEPV 404 >gi|262383260|ref|ZP_06076396.1| Ni/Fe hydrogenase maturation protein HypF [Bacteroides sp. 2_1_33B] gi|301309315|ref|ZP_07215257.1| Ni/Fe hydrogenase maturation protein HypF [Bacteroides sp. 20_3] gi|262294158|gb|EEY82090.1| Ni/Fe hydrogenase maturation protein HypF [Bacteroides sp. 2_1_33B] gi|300832404|gb|EFK63032.1| Ni/Fe hydrogenase maturation protein HypF [Bacteroides sp. 20_3] Length = 760 Score = 63.5 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 61/177 (34%), Gaps = 18/177 (10%) Query: 34 GLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFW 88 G+ D+ N A+ RL EIK+R P D+ ++ + +P+ + W Sbjct: 223 GIGGYHLICDASNERAVARLREIKQRD-TKPFAVMFRDLEHLQVYTVTEPMEERCL-VSW 280 Query: 89 PGPLTLVLDLLSTTDIHPLSTANLKTACFR---VPCGFTKKLIETYGHP-LAIPSANRSG 144 P+ L L + + + T +P + G P L + S N S Sbjct: 281 RRPIVL---LRQRSRLASGINPGMHTLGCMLSYMPIHY--DWFARTGIPALVMTSGNLSD 335 Query: 145 QISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIVNVQCEKKVRILRPGGLEIE 200 + + ++ +++ ++ +++ V + I R G E Sbjct: 336 LPIAIT-PEDAEAQLAGKVAILLHHNRPIHNRVDDSVLQVCGGQPCLIRRSRGYVPE 391 >gi|222823796|ref|YP_002575370.1| transcriptional regulatory protein HypF [Campylobacter lari RM2100] gi|222539018|gb|ACM64119.1| transcriptional regulatory protein HypF [Campylobacter lari RM2100] Length = 732 Score = 63.5 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 37/169 (21%), Positives = 57/169 (33%), Gaps = 22/169 (13%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 D A + L+ G IA G+ DS N AI L K RP P Sbjct: 201 DEKAFILLAKLLEEGKIIAFK-----GMGGFHLICDSTNKNAINELRIRKNRP-KKPFAI 254 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR---V 119 V D+ M ++ A ++ L P+ + L++ +IH + + Sbjct: 255 MVKDLKMAQELAFINEAEAKLLTSNL-KPIVI----LNSKNIHKSLAPDTNKIGIMLAYM 309 Query: 120 PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 L E + P+ SAN S Q I +L + +D Sbjct: 310 GTHLM--LFEHFKKPIIATSANLSSQSIIYEETKLL-EQLSDVFDFYLD 355 >gi|320353848|ref|YP_004195187.1| (NiFe) hydrogenase maturation protein HypF [Desulfobulbus propionicus DSM 2032] gi|320122350|gb|ADW17896.1| (NiFe) hydrogenase maturation protein HypF [Desulfobulbus propionicus DSM 2032] Length = 773 Score = 63.5 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 50/144 (34%), Gaps = 16/144 (11%) Query: 21 AGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75 G +AI GL D + A+ L K RPA PL + D+ ++ A Sbjct: 222 EGGVVAIK-----GLGGFHLAVDGCSEEAVALLRTRKNRPA-KPLAIMIRDLETAERFAW 275 Query: 76 VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHP 134 + L P +++D S + + L +P L++ G P Sbjct: 276 LSEQDKALLTS--PEHPIVLMDRRSGSPLAEGVAPGLGAIGLMLPYTPLHHLLLDQPGIP 333 Query: 135 --LAIPSANRSGQISITNVKHILS 156 L + S NRS + T L Sbjct: 334 EALVMTSGNRSDEPICTGNDEALR 357 >gi|332162867|ref|YP_004299444.1| hydrogenase maturation protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325667097|gb|ADZ43741.1| hydrogenase maturation protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 758 Score = 63.5 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 50/124 (40%), Gaps = 2/124 (1%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LAVD+ N A+ RL E K RP+ PL + D ++ S + L L P + Sbjct: 227 LAVDATNAVAVARLRERKHRPS-KPLAVMLPDADWLQSCVSSADHTALLGLLRSPAAPIV 285 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGHPLAIPSANRSGQISITNVKH 153 ++ + + L +P + L++ PL + S N G+ + + Sbjct: 286 LVAKQPESPLCVAVAPELPEIGVMLPANPLQHLLLQQVARPLVMTSGNGRGKPPALSNQQ 345 Query: 154 ILSS 157 LS+ Sbjct: 346 ALSA 349 >gi|227115209|ref|ZP_03828865.1| hypothetical protein PcarbP_19720 [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 259 Score = 63.5 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 39/173 (22%), Positives = 67/173 (38%), Gaps = 18/173 (10%) Query: 13 RKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 A + + G I PT+ Y + + + R ++ K+R P + I+ +K Sbjct: 14 DDAVQIMSHDGGIIVSPTKVGYIIMAS--DKAGLERKFDAKQRSRSKPGVVLCGSIAQLK 71 Query: 72 KHASVDPLSLHLAKLFWPGP--LTLVLDLLSTTDIH-------PLSTANLKTACFRV--- 119 A ++P L + W L +L + + L + KT+CF + Sbjct: 72 ALAQLNPEIEQLYQRHWDADVLLGCILPWHDSALVRIPKDGSKALMMDDRKTSCFVIKFG 131 Query: 120 -PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 P T++L E YG SAN SG+ + V+ + I LII+ Sbjct: 132 TPSEILTQELWEKYGKLTFASSANPSGKGNRGEVEG-IGERISAFADLIIEAD 183 >gi|254281722|ref|ZP_04956690.1| (NiFe) hydrogenase maturation protein HypF [gamma proteobacterium NOR51-B] gi|219677925|gb|EED34274.1| (NiFe) hydrogenase maturation protein HypF [gamma proteobacterium NOR51-B] Length = 771 Score = 63.5 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 60/164 (36%), Gaps = 15/164 (9%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICHV 64 AL A + +G A V GL D+RN A+R L K+RP P V Sbjct: 212 EALDGAAAIIRSGGIAA-----VKGLGGFHLLTDARNAEAVRTLRSRKRRP-NKPFALMV 265 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123 + + + V+ L P+ ++L + T + L +P Sbjct: 266 PSLEVAEHLCFVNADEKSLLASS-EAPI-VLLRQRAVTGVTEDVAPGLCELGLMLPYTPL 323 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 L+ G P+ + SAN SG+ + N L + + + + Sbjct: 324 HHLLLHRLGFPIVVTSANLSGEPIVANEDEAL-ARLGHLADVFL 366 >gi|307261816|ref|ZP_07543481.1| hypothetical protein appser12_13760 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306868480|gb|EFN00292.1| hypothetical protein appser12_13760 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 351 Score = 63.5 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 60/154 (38%), Gaps = 17/154 (11%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 +A+ +A E L G +A V GL D+ I L K RP+ P V Sbjct: 209 SAILEAVEKLRQGYIVA-----VKGLGGFHLACDATQAKTIDLLRHRKVRPS-KPFAVMV 262 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 ++ + + A + L L + P+ ++L +H L +L +P Sbjct: 263 PNLDWLTELAEEERLLLQSSAA----PI-VLLAKHKVRGVHDLVAPDLAEIGVMLPSNPL 317 Query: 125 KKLIE-TYGHPLAIPSANRSGQISITNVKHILSS 157 + L+ PL + SANRSG N + L S Sbjct: 318 QHLLMHEVNMPLVMTSANRSGLPPALNNQDALDS 351 >gi|332308822|ref|YP_004436672.1| (NiFe) hydrogenase maturation protein HypF [Glaciecola agarilytica 4H-3-7+YE-5] gi|332176151|gb|AEE25404.1| (NiFe) hydrogenase maturation protein HypF [Glaciecola agarilytica 4H-3-7+YE-5] Length = 769 Score = 63.5 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 57/159 (35%), Gaps = 15/159 (9%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETV--YGLAVDSRNPTAIRRLYEIKKRPAMNP 59 ++++ D + + L+ G I + ++V Y L D++N A+ L K RP P Sbjct: 209 RVIAQGDDDVVTAVVGCLNQGAIIVL--KSVGGYHLICDAQNTEAVDLLRRRKNRP-DKP 265 Query: 60 LICH-------VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANL 112 V S + V+ L P+ L+ I L Sbjct: 266 FAVMLPEPQSDVPGQSWLDNCVVVNSQDKALLSSSI-RPI-LLAPKKRNAPIAENVAPML 323 Query: 113 KTACFRVPC-GFTKKLIETYGHPLAIPSANRSGQISITN 150 +PC G L++ + P+ S N G+ +T+ Sbjct: 324 SDLGVMLPCSGLHLMLMKQFNRPMIATSGNEYGEPMVTS 362 >gi|251792886|ref|YP_003007612.1| [NiFe] hydrogenase maturation protein HypF [Aggregatibacter aphrophilus NJ8700] gi|247534279|gb|ACS97525.1| [NiFe] hydrogenase maturation protein HypF [Aggregatibacter aphrophilus NJ8700] Length = 762 Score = 63.5 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 80/222 (36%), Gaps = 28/222 (12%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPL 60 I A++ L G IAI G+ D+ NP ++ L + K+RP+ PL Sbjct: 199 IDKKTAIKTTALLLHEGHIIAIK-----GIGGFHLACDAANPVVVQLLRDRKRRPS-KPL 252 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 V +++++ L P ++L + L +P Sbjct: 253 AVMVPNLNVLTDLTE--QEIEQLTSTAAP---IVLLPKHKAPPLAEQIAPKLNEIGVMLP 307 Query: 121 CGFTKK-LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + L++ L + SAN SGQ + + + + ++ + Sbjct: 308 SNPLQHLLLKEADRTLVMTSANPSGQPPVLDNQSAV-ENLSDLADYFLCHNRD------- 359 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQ 221 I+ + VR+ G +ETL+RA + + + +P+ Sbjct: 360 ILQRADDSLVRLAFDG---VETLRRARGYVPDETLLDHHSPR 398 >gi|260891194|ref|ZP_05902457.1| Sua5/YciO/YrdC/YwlC family protein [Leptotrichia hofstadii F0254] gi|260859221|gb|EEX73721.1| Sua5/YciO/YrdC/YwlC family protein [Leptotrichia hofstadii F0254] Length = 50 Score = 63.2 bits (153), Expect = 5e-08, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK 53 N + A L G PT+TVYG+ + + ++Y+IKK Sbjct: 2 NKIENAVRILKNGGVAIFPTDTVYGIGTLPK-KEYMEKIYKIKK 44 >gi|326204071|ref|ZP_08193932.1| (NiFe) hydrogenase maturation protein HypF [Clostridium papyrosolvens DSM 2782] gi|325985838|gb|EGD46673.1| (NiFe) hydrogenase maturation protein HypF [Clostridium papyrosolvens DSM 2782] Length = 790 Score = 63.2 bits (153), Expect = 5e-08, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 50/160 (31%), Gaps = 17/160 (10%) Query: 16 CEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 + + G +AI G+ D N A+ RL K R P D+ Sbjct: 210 ADMIKRGYIVAIK-----GIGGYHLACDGLNKEAVERLRCRKHRD-DKPFAVMAKDLKTA 263 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI-E 129 +K+ ++ + P ++L+ + + + +P L+ E Sbjct: 264 EKYCAISTAETKILNS--PASPIVLLERIDGDILPDAIAHLNRYLGVMLPYTPVHHLLFE 321 Query: 130 TYGHP--LAIPSANRSGQISITNVKHILSSSICKEIPLII 167 G P L + S N S + + + + + Sbjct: 322 EEGFPELLVMTSGNLSSEPIFYRDEEAM-EGLQGIADAYL 360 >gi|90407587|ref|ZP_01215768.1| hydrogenase maturation protein HypF [Psychromonas sp. CNPT3] gi|90311290|gb|EAS39394.1| hydrogenase maturation protein HypF [Psychromonas sp. CNPT3] Length = 842 Score = 63.2 bits (153), Expect = 5e-08, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 59/176 (33%), Gaps = 32/176 (18%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 L+KA + AG IAI G+ D+ N A+ +L K RP PL V Sbjct: 227 VLQKAASAIRAGKIIAIK-----GIGGFHLVCDASNQKAVNKLRISKNRPL-KPLAIMVK 280 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTT------------DIHPLSTANLK 113 D + + + L P+TL+ + + D+ N+ Sbjct: 281 DRTQAQHYVQGGEAEWALLGS-QQRPITLLQKHDALSLQSVSNKHNKILDLASNIAENVP 339 Query: 114 TACFRVPCGFTKKLI-ETYGHPLAIPSANRSGQIS-------ITNVKHILSSSICK 161 +P L+ + L SAN SGQ T +H ++ I Sbjct: 340 YLGIMLPYTPLHYLLFDHIESALVFTSANYSGQPILIEGDDVATKFQHCIAGFIDH 395 >gi|261368113|ref|ZP_05980996.1| [NiFe] hydrogenase maturation protein HypF [Subdoligranulum variabile DSM 15176] gi|282569870|gb|EFB75405.1| [NiFe] hydrogenase maturation protein HypF [Subdoligranulum variabile DSM 15176] Length = 634 Score = 63.2 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 40/156 (25%), Positives = 60/156 (38%), Gaps = 17/156 (10%) Query: 10 NALRKACEFLDAGLPIAIPTETVYG-----LAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 + + A + L AG +A V G LA + +P A+ RL K RP PL Sbjct: 86 DPIALAQKALAAGKIVA-----VKGTGGIHLACRADSPDAVARLRRRKHRPE-KPLALMA 139 Query: 65 SDISMVKKHASVDPLSLHLAKLFWP-GPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 D+S + L + P P+ L+ T +T L P Sbjct: 140 RDLSTAARFCRYTEEEAALLQS--PRRPILLLAKKDPTGQTWLSATTRLGVMLPYTPLHI 197 Query: 124 TKKLIETYGHP--LAIPSANRSGQISITNVKHILSS 157 L T+G P L + SANRSG + + + +S+ Sbjct: 198 LL-LDGTFGGPDLLVMTSANRSGCPVLLDNEDAVSA 232 >gi|146296555|ref|YP_001180326.1| (NiFe) hydrogenase maturation protein HypF [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410131|gb|ABP67135.1| (NiFe) hydrogenase maturation protein HypF [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 757 Score = 63.2 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 38/173 (21%), Positives = 58/173 (33%), Gaps = 18/173 (10%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPA 56 + + ++ L + C ++ G IAI G+ D N ++ RL+ K R Sbjct: 197 KHIDGSNLELLDRVCYEIEKGKIIAIK-----GIGGFHLVVDPYNKESVERLFRSKNR-E 250 Query: 57 MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 PL DI VKK+ V + P ++ TD A L T Sbjct: 251 GKPLALVCKDIETVKKYCDVSEAEEEIFNS----PRCPIILFERKTDHFLHVNAGLHTLG 306 Query: 117 FRVPCGFTKKLIETYGH--PLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 I T + L SAN SG I + L +C ++ Sbjct: 307 IMRAYTPILDYILTKTNRDLLIATSANLSGIPMIIDEDEAL-EKLCDIADFVL 358 >gi|89074830|ref|ZP_01161284.1| hydrogenase maturation protein HypF [Photobacterium sp. SKA34] gi|89049405|gb|EAR54967.1| hydrogenase maturation protein HypF [Photobacterium sp. SKA34] Length = 796 Score = 63.2 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 53/183 (28%), Gaps = 28/183 (15%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPL 60 T A+ + + + G +AI G+ D+ N A+ L +K R PL Sbjct: 213 ATKQTAIEQLAQKIKDGEIVAIK-----GIGGFHLMCDATNAQAVASLRRLKHR-QSKPL 266 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---------IHPLSTAN 111 + + + P+ L+ + + N Sbjct: 267 AIMAASDDITHQLVEGSDAEWEALYAQA-RPIVLMKKRIDVAAEEVTRTDGVLAENVAPN 325 Query: 112 LKTACFRVPCGFTKKLIE------TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPL 165 + P L+ L + SAN SG T + + + +I Sbjct: 326 VPYLGIMQPYTPLHYLLFDKLKEIDATSALVMTSANLSGMPIATELAQVC-AQFSGKISG 384 Query: 166 IID 168 ++D Sbjct: 385 VLD 387 >gi|116623302|ref|YP_825458.1| (NiFe) hydrogenase maturation protein HypF [Candidatus Solibacter usitatus Ellin6076] gi|116226464|gb|ABJ85173.1| (NiFe) hydrogenase maturation protein HypF [Candidatus Solibacter usitatus Ellin6076] Length = 725 Score = 62.8 bits (152), Expect = 6e-08, Method: Composition-based stats. Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 8/136 (5%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K+R + P V D+ ++ VD ++ P + Sbjct: 213 LACDARNSAAVDALRARKRR-SDKPFALMVRDLDAARELCVVDHVAARALTG--PRHPIV 269 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAI---PSANRSGQISITNV 151 +L + T +P L+ G P + S N S + + Sbjct: 270 ILLRRDGVPLPGAVAPGNPTLGIMLPYTPLHHLL-FAGAPFSALVMTSGNLSEEPIVVEN 328 Query: 152 KHILSSSICKEIPLII 167 + + Sbjct: 329 ADA-RQRLGPVSDWQL 343 >gi|298527912|ref|ZP_07015316.1| (NiFe) hydrogenase maturation protein HypF [Desulfonatronospira thiodismutans ASO3-1] gi|298511564|gb|EFI35466.1| (NiFe) hydrogenase maturation protein HypF [Desulfonatronospira thiodismutans ASO3-1] Length = 768 Score = 62.8 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 56/170 (32%), Gaps = 23/170 (13%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 L+K+ L G +AI GL D+ + A+R L K RP PL V D Sbjct: 204 LKKSAYLLKQGNILAIK-----GLGGFHLACDAADQEAVRELRRRKNRP-HKPLAVMVPD 257 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR---VPCGF 123 I+ + A + PL + + P L + + + P + P Sbjct: 258 IAAAVELAELSPLEAEILQS--PSSPILAVKPIQPCPLSPELAPDTDLLGIMLAYTPLHL 315 Query: 124 TK-----KLIETYGHP-LAIPSANRSGQISITNVKHILSSSICKEIPLII 167 L+ P L + S N + + + L + + + Sbjct: 316 VLFEHFKALLTRQEIPALVMTSGNMNSEPISLGNREALG-RLGQIADYFL 364 >gi|212223432|ref|YP_002306668.1| hydrogenase maturation protein HypF [Thermococcus onnurineus NA1] gi|212008389|gb|ACJ15771.1| hydrogenase maturation protein HypF [Thermococcus onnurineus NA1] Length = 813 Score = 62.8 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 69/201 (34%), Gaps = 15/201 (7%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 + L+KA E +D G +AI G+ D+ + L + RP P Sbjct: 244 DPLKKAAELIDNGYIVAIK-----GIGGIHLACDATREDVVAELRKRIHRPQ-KPFAIMA 297 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 D+ +++ A + P L K + P+ + L + L T +P T Sbjct: 298 KDVETIEEFAFISPEELEELKSYR-RPI-MTLRKKEPFPLPENLAPGLHTIGVMLPYAGT 355 Query: 125 KKLIETYGH-PL-AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 ++ Y P+ + SAN G + + + ++ + ++V Sbjct: 356 HYILFHYSKTPVYVMTSANYPGMPMVKDNERAFEELKDVADYFLLHNRKILNRADDSVVR 415 Query: 183 VQCEKKVRILRPGGLEIETLK 203 ++ I R G ++ Sbjct: 416 FVNGRRAVIRRSRGFVPLPIE 436 >gi|194334448|ref|YP_002016308.1| (NiFe) hydrogenase maturation protein HypF [Prosthecochloris aestuarii DSM 271] gi|194312266|gb|ACF46661.1| (NiFe) hydrogenase maturation protein HypF [Prosthecochloris aestuarii DSM 271] Length = 778 Score = 62.8 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 39/199 (19%), Positives = 67/199 (33%), Gaps = 22/199 (11%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYG-----LAVDSRNPTAIRRLYEIKKRPAMNP 59 I + L A + L G +A V G LAVD+ + +A+ L E K R P Sbjct: 212 PINAPDPLSLALQKLKDGDIVA-----VKGVGGFHLAVDATDQSAVMNLRERKGRER-KP 265 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 + +K A V +A P+ L+ S + + P + Sbjct: 266 FAVMARSLGSAEKVAQVSDE-ERVALRSLQAPVVLMHKKASASLLAPDVAPANDRIGLML 324 Query: 120 PCGFTKKLIETYG-HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 P L+ G L + SAN S + +S + + Sbjct: 325 PYSPLHVLMMEEGPEFLVMTSANSSEEPIALENDEAVS-RLQGIADYFLVHNRP------ 377 Query: 179 TIVNVQCEKKVRILRPGGL 197 ++++C+ V ++ G L Sbjct: 378 --IHLRCDDSVTMVMSGAL 394 >gi|161502112|ref|YP_001569224.1| hydrogenase maturation protein [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863459|gb|ABX20082.1| hypothetical protein SARI_00129 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 746 Score = 62.8 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 33/144 (22%), Positives = 53/144 (36%), Gaps = 20/144 (13%) Query: 20 DAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 +AG IA V GL D+RN +A+ L K RPA PL + + Sbjct: 211 NAGGIIA-----VKGLGGFHLVCDARNNSAVAMLRARKHRPA-KPLAVMLPTAQTL---- 260 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGH 133 P + + L P +++D S + L +P + L++ + Sbjct: 261 ---PTAAR-SLLTTPAAPIVLVDKQSVPSLCEGIAPGLTEVGVMLPANPLQHLLLQALNY 316 Query: 134 PLAIPSANRSGQISITNVKHILSS 157 PL + S N SG+ + L Sbjct: 317 PLVMTSGNLSGRPPAITNEQALDD 340 >gi|319441540|ref|ZP_07990696.1| putative translation factor (SUA5) [Corynebacterium variabile DSM 44702] Length = 259 Score = 62.8 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 81/223 (36%), Gaps = 25/223 (11%) Query: 13 RKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +A E L G + PT+ Y +A + + R + +K R P + I +K Sbjct: 14 EEAVELLRTPGHIVVTPTKVGYIIATS--DREGLERKFAVKHRKRNKPGVVLCGSIEQLK 71 Query: 72 KHASVDPLSLHLAKLFWPGPL--TLVLDLLSTT-------DIHPLSTANLKTACFR---- 118 + A + P + + +L L+T T+CF Sbjct: 72 ELAQLTPEIEKFYQTCVDRDILMGCILPWKEGAQEKYLPEGASELATDVRGTSCFVLKFG 131 Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 VP ++L E + SAN SG+ + V+ + I E L+I+G Sbjct: 132 VPGENIARELWEKDRRLVFASSANPSGKGNRGLVEG-IGDEIANEADLVIEGD------- 183 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTP 220 S + ++Q +K + G+ + + ++ E + TP Sbjct: 184 SYVASIQPDKSIETRYEQGVMVSMVDADGTIVPEQHGERGITP 226 >gi|148264007|ref|YP_001230713.1| (NiFe) hydrogenase maturation protein HypF [Geobacter uraniireducens Rf4] gi|146397507|gb|ABQ26140.1| (NiFe) hydrogenase maturation protein HypF [Geobacter uraniireducens Rf4] Length = 756 Score = 62.8 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 42/197 (21%), Positives = 64/197 (32%), Gaps = 18/197 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 D + L +A L G +A V Y LAVD+ N TA+ L KKR P Sbjct: 199 DCDPLDEAVHLLKEGRILA-----VKGIGGYHLAVDACNETAVAELRRRKKRDE-KPFAL 252 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 V+ V+ A D + L P ++L I +P Sbjct: 253 MVAGPEQVEVLAHADQTEMRLLTG--PERPIVLLGKRDGNPIARRVAPANGYFGVMLPST 310 Query: 123 FTKKLIETYG-HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES--T 179 L+ T L + S N S + + L + + KI S + Sbjct: 311 PLHHLLLTDNFAALVMTSGNASDEPIVYRDADAL-EQLADIADYFLVHDR-KIHSRSDDS 368 Query: 180 IVNVQCEKKVRILRPGG 196 ++ V + + R G Sbjct: 369 VIRVFRGNPLFLRRSRG 385 >gi|290968119|ref|ZP_06559664.1| carbamoyltransferase HypF [Megasphaera genomosp. type_1 str. 28L] gi|290781794|gb|EFD94377.1| carbamoyltransferase HypF [Megasphaera genomosp. type_1 str. 28L] Length = 765 Score = 62.4 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 66/186 (35%), Gaps = 19/186 (10%) Query: 22 GLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76 G IA V GL D+ + TA RL +K RP P + D S VK + Sbjct: 208 GKIIA-----VKGLGGFHLCCDATDETATARLRTLKHRPV-KPFAVMMRDSSAVKNACYI 261 Query: 77 DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYG---- 132 + + + P+ ++L + + + P + +P L+ TY Sbjct: 262 TDKQQEVLEG-YQKPI-MLLKRRTDSWLAPSVAPHNPQVGVFLPYTPLHMLLFTYDDGVQ 319 Query: 133 --HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 L + SAN SG + I + ++ ++ + ++++ + Sbjct: 320 VPPALVMTSANVSGAPICRTEEDIRQEMLSCCDLVLSHDRKIRLRADDSVMDWYDNRPYM 379 Query: 191 ILRPGG 196 I R G Sbjct: 380 IRRSRG 385 >gi|218779858|ref|YP_002431176.1| (NiFe) hydrogenase maturation protein HypF [Desulfatibacillum alkenivorans AK-01] gi|218761242|gb|ACL03708.1| Putative uncharacterized protein containing HypF domain [Desulfatibacillum alkenivorans AK-01] Length = 757 Score = 62.4 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 40/217 (18%), Positives = 75/217 (34%), Gaps = 25/217 (11%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 N L +A E L G +AI GL D+ N A+ L K R PL V Sbjct: 204 NPLARAGELLKQGRILAIK-----GLGGFHLAADAGNSQAVSLLRRRKLR-EEKPLAVMV 257 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 D+ ++ A V P L F P+ ++L + + P + + +P Sbjct: 258 LDVDAARELAEVGPEEEALLMGFR-RPI-VLLKKRAPEALAPEVAPSNRNLGVMLPYTPM 315 Query: 125 K-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 L++ + L + S N S + + + L+ + + + + Sbjct: 316 HYVLMQHSPNALVMTSGNLSEEPICIDNQDALN-RLGNIADFFLVHNRD--------IYL 366 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTP 220 + + + +R G E ++R+ + P Sbjct: 367 RSDDSI--VRRGAGETRFIRRSRGYVPTPVFLKNKAP 401 >gi|227329146|ref|ZP_03833170.1| hypothetical protein PcarcW_18150 [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 259 Score = 62.4 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 39/173 (22%), Positives = 65/173 (37%), Gaps = 18/173 (10%) Query: 13 RKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 A + + G I PT+ Y + + + R ++ K+R P + I+ +K Sbjct: 14 DDAVQIMSHGGGIIVSPTKVGYIIMAS--DKAGLERKFDAKQRNRNKPGVVLCGSIAQLK 71 Query: 72 KHASVDPLSLHLAKLFWPGP--LTLVLDLL-------STTDIHPLSTANLKTACFRV--- 119 A ++P L + W L +L L + KT+CF + Sbjct: 72 VLAQLNPEIEQLYQRHWDTDVLLGCILPWHDSALARIPKDGSKALMMDDRKTSCFVIKFG 131 Query: 120 -PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 P T++L E YG SAN SG+ + V+ + I LII+ Sbjct: 132 KPSEILTQELWERYGKLTFASSANPSGKGNRGEVEG-IGERISAFADLIIEAD 183 >gi|119871725|ref|YP_929732.1| (NiFe) hydrogenase maturation protein HypF [Pyrobaculum islandicum DSM 4184] gi|119673133|gb|ABL87389.1| (NiFe) hydrogenase maturation protein HypF [Pyrobaculum islandicum DSM 4184] Length = 748 Score = 62.4 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 32/195 (16%), Positives = 68/195 (34%), Gaps = 19/195 (9%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 + + +A ++ G +A V G+ + + + +L + KKRP P Sbjct: 203 DPISEASRLINEGYIVA-----VKGVGGFHIFALASDDDVVAKLRKRKKRP-TQPFAIMA 256 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 D+ + A V+ + L P ++L + PL + L +P Sbjct: 257 LDLETAGRLAVVNKTAAELLTS--PQRPIVLLFKREDSPASPLVSPGLDKEGIFLPYTAL 314 Query: 125 KKLI--ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIV 181 + L+ E S N G+ T+ + + I+D + + ++ ++V Sbjct: 315 QYLLLSEIRDKFAIATSGNIHGEPMCTDWRCVAK---LGVADYILDHTLEIVHRVDDSVV 371 Query: 182 NVQCEKKVRILRPGG 196 + + R G Sbjct: 372 RFTAGRPTLLRRGRG 386 >gi|313893328|ref|ZP_07826902.1| carbamoyltransferase HypF [Veillonella sp. oral taxon 158 str. F0412] gi|313442097|gb|EFR60515.1| carbamoyltransferase HypF [Veillonella sp. oral taxon 158 str. F0412] Length = 760 Score = 62.4 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 69/190 (36%), Gaps = 9/190 (4%) Query: 17 EFLDAGLPIAIPTETV--YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 E ++ G IAI + V Y L D+RN ++RL + K RP PL V + + Sbjct: 215 ELINEGSIIAI--KGVGGYHLVCDARNDAVVQRLRKRKNRP-HKPLAIMVGSLDTAIELV 271 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLL-STTDIHPLSTANLKTACFRVPCGFTKKLIETYGH 133 + + L + P+ L+ S+ + + +P +++ Sbjct: 272 QISDVELDVLTG-MERPIVLLERNHNSSVRLSSHVAPDNHMLGVMLPYTPMHEVLLPSDA 330 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIVNVQCEKKVRIL 192 + S NRSG + N + + + + L+ ++V V K I Sbjct: 331 AWVMTSGNRSGDPVLYNDDQAFNE-LGEVADYFLVHNREIYAPLDDSVVMVINNKPRFIR 389 Query: 193 RPGGLEIETL 202 R G E + Sbjct: 390 RSRGYVPEPI 399 >gi|310765469|gb|ADP10419.1| putative translation factor [Erwinia sp. Ejp617] Length = 259 Score = 62.4 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 39/169 (23%), Positives = 63/169 (37%), Gaps = 18/169 (10%) Query: 14 KACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 +A E L G I PT+ Y + + + R ++ K+R P + + +K+ Sbjct: 15 EAVEILSANGGMIVCPTKVGYIIMTS--DAKGLERKFDAKQRNRNKPGVVLCGSLEQLKE 72 Query: 73 HASVDPLSLHLAKLFWPGP--LTLVLDLL-------STTDIHPLSTANLKTACFR----V 119 A ++P L + W L +L L +T+CF V Sbjct: 73 LAQLNPEIEALYQQHWDKDVLLGCILPWKEEAVARIPDDGSKELMMDRRQTSCFVIKFGV 132 Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 P K L E +G SAN SG+ + V+ + I + LII Sbjct: 133 PGENLAKALWENHGKFSFASSANPSGKGNRGLVEG-IGERIEQHADLII 180 >gi|188535172|ref|YP_001908969.1| hypothetical protein ETA_30540 [Erwinia tasmaniensis Et1/99] gi|188030214|emb|CAO98100.1| Conserved hypothetical protein [Erwinia tasmaniensis Et1/99] Length = 259 Score = 62.4 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 39/169 (23%), Positives = 64/169 (37%), Gaps = 18/169 (10%) Query: 14 KACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 +A E L G I PT+ Y + + + R ++ K+R P + + +K+ Sbjct: 15 EAVEILSANGGMIVCPTKVGYIIMTS--DAKGLERKFDAKQRNRNKPGVVLCGSLEQLKE 72 Query: 73 HASVDPLSLHLAKLFWPGP--LTLVLDLL-------STTDIHPLSTANLKTACFR----V 119 A ++P L + W L +L L +T+CF V Sbjct: 73 LAQLNPEIEALYQQHWDKDVLLGCILPWKEEAVARIPDDGSKELMMDRRQTSCFVIKFGV 132 Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 P K+L E +G SAN SG+ + V+ + I + LII Sbjct: 133 PGENLAKELWENHGKFSFASSANPSGKGNRGLVEG-IGERIEQHADLII 180 >gi|154495337|ref|ZP_02034342.1| hypothetical protein PARMER_04394 [Parabacteroides merdae ATCC 43184] gi|154085261|gb|EDN84306.1| hypothetical protein PARMER_04394 [Parabacteroides merdae ATCC 43184] Length = 622 Score = 62.0 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 27/140 (19%), Positives = 51/140 (36%), Gaps = 11/140 (7%) Query: 34 GLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFW 88 G+ D+R+ A+ RL +IK+R P DI ++++ A L W Sbjct: 228 GIGGYHLICDARSEKAVSRLRDIKQRD-GMPFAVLFRDIENIRRYV-FSNGVEEKALLSW 285 Query: 89 PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANRSGQIS 147 P+ L+ L + ++T +P E P + ++ + Sbjct: 286 RRPIVLLKQLR---LLASSVNPGMETLGCMLPYMPLHSDWFERLDTPALVMTSGNISECP 342 Query: 148 ITNVKHILSSSICKEIPLII 167 IT + +IPL++ Sbjct: 343 ITITPEEAEKQLAGKIPLLL 362 >gi|312137441|ref|YP_004004778.1| (nife) hydrogenase maturation protein hypf [Methanothermus fervidus DSM 2088] gi|311225160|gb|ADP78016.1| (NiFe) hydrogenase maturation protein HypF [Methanothermus fervidus DSM 2088] Length = 758 Score = 62.0 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 40/204 (19%), Positives = 73/204 (35%), Gaps = 25/204 (12%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 + +++ + LD G +AI G+ D+ + +++L + RP+ P C Sbjct: 195 DDPIKETAKLLDEGYIVAIK-----GIGGAHIACDATDEDVVKKLRKRLNRPS-QPFACM 248 Query: 64 VSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-- 120 DI +KK A V+ L P +VL I + L T +P Sbjct: 249 SKDIDTIKKFAIVNENEKETLLSKSRP---IVVLKKKEDCAIANSVSPGLHTIGVMLPYS 305 Query: 121 --CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII--DGGISKIGL 176 K ++ + SAN+ G + + I+ + + D I Sbjct: 306 GLHHILFKYLKK--EAYVMTSANKPGMPMLIKNRDIIK-KLNGIADYFLLHDRKIINRCD 362 Query: 177 ESTIVNVQCEKKVRILRPGGLEIE 200 +S ++ + KK + R G E Sbjct: 363 DS-VIRFRGGKKAFLRRSRGYAPE 385 >gi|299139669|ref|ZP_07032842.1| (NiFe) hydrogenase maturation protein HypF [Acidobacterium sp. MP5ACTX8] gi|298598293|gb|EFI54458.1| (NiFe) hydrogenase maturation protein HypF [Acidobacterium sp. MP5ACTX8] Length = 787 Score = 62.0 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 40/217 (18%), Positives = 69/217 (31%), Gaps = 27/217 (12%) Query: 5 SITDSNAL---RKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPA 56 S TD++AL A L G +A V GL D+ N TA+ L K RP Sbjct: 210 SFTDTDALPILHHARGLLREGKILA-----VKGLGGFLFACDATNETAVAELRRRKHRP- 263 Query: 57 MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL---STANLK 113 P V DI + + + P+ ++ L T + + Sbjct: 264 HKPFALMVRDIDAARALCGITTEDEAALRHLR-RPVVILPRRLDTNQVPGIGLSVAPGNN 322 Query: 114 TACFRVPCGFTKKLIETYGHP--------LAIPSANRSGQISITNVKHILSSSICKEIPL 165 T +P L+ P L + S N S + + + L Sbjct: 323 TLGIMLPYTPLHYLL-FSDSPQKDSAFSALVMTSGNISEEPIVISNIDALLQLDGVADWF 381 Query: 166 IIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202 ++ ++ ++V ++ + R G + L Sbjct: 382 LLHNREIATRVDDSVVRTFEGRERVLRRSRGFTPQAL 418 >gi|196232005|ref|ZP_03130861.1| hypothetical protein CfE428DRAFT_4027 [Chthoniobacter flavus Ellin428] gi|196224127|gb|EDY18641.1| hypothetical protein CfE428DRAFT_4027 [Chthoniobacter flavus Ellin428] Length = 35 Score = 62.0 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 16/35 (45%), Positives = 23/35 (65%) Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320 M+ D++G I +P HGLGIAI +RL +A+A Sbjct: 1 MRRLDEAGLDMILAEEVPEHGLGIAIMDRLRKASA 35 >gi|253687192|ref|YP_003016382.1| hypothetical protein PC1_0792 [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753770|gb|ACT11846.1| conserved hypothetical protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 259 Score = 62.0 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 39/171 (22%), Positives = 64/171 (37%), Gaps = 18/171 (10%) Query: 15 ACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 A + + G I PT+ Y + + + R ++ K+R P + ++ +K Sbjct: 16 AVQVMSRGGGIIVSPTKVGYIIMAS--DKVGLERKFDAKQRNRNKPGVVLCGSLAQLKAL 73 Query: 74 ASVDPLSLHLAKLFWPGP--LTLVLDLL-------STTDIHPLSTANLKTACFRV----P 120 A ++P L + W L +L L + KT+CF + P Sbjct: 74 AQLNPEIERLYQRHWDADVLLGCILPWRDEALAQIPKDGSKALMMDDRKTSCFVIKFGKP 133 Query: 121 CGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 T+ L E YG SAN SG+ + VK + I LII+ Sbjct: 134 SEILTQALWEGYGKLTFASSANPSGKGNRGEVKG-IGERISAFADLIIEAD 183 >gi|124514745|gb|EAY56257.1| putative translation factor (SUA5) [Leptospirillum rubarum] Length = 173 Score = 62.0 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 4/115 (3%) Query: 46 RRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLF-WPGPLTLVLDLLSTTDI 104 RRL+ IK R P++ +S+V + A + S + WP TLVL Sbjct: 54 RRLFSIKARSPGKPILYLAGSLSVVARFARLPDTSRCRRHVSRWPNFRTLVLPARP--LA 111 Query: 105 HPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSS 158 L A+ FR+P F + ++ G PL+ S N SG + + IL + Sbjct: 112 VQLGMAHNGGVAFRIPEDRFLRLFLKFLGTPLSGTSLNLSGNPPLRSPDAILRAF 166 >gi|292489722|ref|YP_003532612.1| hypothetical protein EAMY_3259 [Erwinia amylovora CFBP1430] gi|292898070|ref|YP_003537439.1| hypothetical protein EAM_0344 [Erwinia amylovora ATCC 49946] gi|291197918|emb|CBJ45019.1| conserved hypothetical protein [Erwinia amylovora ATCC 49946] gi|291555159|emb|CBA23347.1| hypothetical protein EAMY_3259 [Erwinia amylovora CFBP1430] gi|312173901|emb|CBX82155.1| hypothetical protein EAIL5_3335 [Erwinia amylovora ATCC BAA-2158] Length = 259 Score = 62.0 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 37/169 (21%), Positives = 63/169 (37%), Gaps = 18/169 (10%) Query: 14 KACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 +A E L G I PT+ Y + + + R ++ K+R P + + +K+ Sbjct: 15 EAVEILSANGGMIVCPTKVGYIIMTS--DAKGLERKFDAKQRNRNKPGVVLCGSLEQLKE 72 Query: 73 HASVDPLSLHLAKLFWPGP--LTLVLDLL-------STTDIHPLSTANLKTACFRVP--- 120 A ++P L + W L +L L +T+CF + Sbjct: 73 LAQLNPEIEALYQQHWDKDVLLGCILPWKEEAVARIPDDGSKELMMDRRQTSCFVIKFGL 132 Query: 121 --CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 K+L E +G SAN SG+ + V+ + I + LII Sbjct: 133 PGENLAKELWENHGKFSFASSANPSGKGNRGLVEG-IGDRIEQHADLII 180 >gi|254430228|ref|ZP_05043931.1| (NiFe) hydrogenase maturation protein HypF [Cyanobium sp. PCC 7001] gi|197624681|gb|EDY37240.1| (NiFe) hydrogenase maturation protein HypF [Cyanobium sp. PCC 7001] Length = 837 Score = 62.0 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 34/220 (15%), Positives = 69/220 (31%), Gaps = 23/220 (10%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICHV 64 + + A + L AG +A+ G+ ++ A++RL K RPA P V Sbjct: 209 DPIAAAADLLRAGGILALQ-----GVGGFQLLVEATRQEAVQRLRRRKSRPA-KPFALLV 262 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI---------HPLSTANLKTA 115 +D + ++ + + L + P ++L Sbjct: 263 ADPAWLEPQVRIGEAEIRLLRS--PAAPIVLLRRRHDPQALQGPAAMVVAEAVAPGSPAL 320 Query: 116 CFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174 +P + L+ G PL S N SG+ + ++ Sbjct: 321 GVMLPASPLHRLLVAAVGRPLVATSGNPSGEPLCIDPLEARQRLAGIADAFLLHNRPIAR 380 Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV 214 L+ ++V + + V + R G L + ++ Sbjct: 381 PLDDSLVQLIDGRPVLLRRARGHAPAALDLPLPPPADHAA 420 >gi|38637761|ref|NP_942735.1| HypF2 [Ralstonia eutropha H16] gi|124053466|sp|O07451|HYPF2_RALEH RecName: Full=Carbamoyltransferase hypF2; AltName: Full=Carbamoyl phosphate-converting enzyme hypF2; AltName: Full=[NiFe]-hydrogenase maturation factor hypF2; Short=Hydrogenase maturation protein hypF2 gi|32527099|gb|AAP85849.1| HypF2 [Ralstonia eutropha H16] Length = 807 Score = 62.0 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 54/171 (31%), Gaps = 27/171 (15%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMN 58 M + D + + + L G +AI GL D+ N A+ RL K+R Sbjct: 207 MPVEDVDPIAETVARLQRGEIVAIK-----GLGGFHLACDAHNADAVARLRSRKQR-EEK 260 Query: 59 PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 P V++++ + + L P+ L+ L Sbjct: 261 PFAVMVANLATAAQWGDIGSGEAALLTAS-ERPIVLLRKRSGVDGRFAGVAPGLVWLGVM 319 Query: 119 VPCGFTKKLI--ETYGHP-------------LAIPSANRSGQISITNVKHI 154 +P + L+ E G P L + SAN G+ +T Sbjct: 320 LPYTPLQYLLFHEAAGRPEGLGWLAQPQSLVLVMTSANPGGEPLVTGNDEA 370 >gi|153003391|ref|YP_001377716.1| (NiFe) hydrogenase maturation protein HypF [Anaeromyxobacter sp. Fw109-5] gi|152026964|gb|ABS24732.1| (NiFe) hydrogenase maturation protein HypF [Anaeromyxobacter sp. Fw109-5] Length = 781 Score = 62.0 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 42/142 (29%), Gaps = 12/142 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+ + A+ L K+R PL V D+ ++ A + L P+ L Sbjct: 238 LACDATSSAAVATLRARKRR-EEKPLAVMVRDLDEARRLAEIGEAEAALLASV-ERPIVL 295 Query: 95 VLDLLSTT--------DIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQ 145 + P + +P L+ PL + S N S + Sbjct: 296 CRRRPEARFDGLTVSGSLAPEVAPDSPLVGLLLPYAPLHHLLLGAAARPLVMTSGNLSEE 355 Query: 146 ISITNVKHILSSSICKEIPLII 167 L + L + Sbjct: 356 PIAFEDDEALR-RLGGIADLFL 376 >gi|213648111|ref|ZP_03378164.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 800 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 20/144 (13%) Query: 20 DAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 +AG IA V GL D+RN A+ L K RPA PL + + Sbjct: 211 NAGGIIA-----VKGLGGFHLACDARNDNAVAMLRARKHRPA-KPLAVMLPTAQTL---- 260 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGH 133 P + + L P +++D + L +P + L++ + Sbjct: 261 ---PTAAR-SLLTTPAAPIVLVDKQYVPSLSEGIAPGLTEVGVMLPANPLQHLLLQALNY 316 Query: 134 PLAIPSANRSGQISITNVKHILSS 157 PL + S N SG+ + L Sbjct: 317 PLVMTSGNLSGKPPAITNEQALDD 340 >gi|220927915|ref|YP_002504824.1| (NiFe) hydrogenase maturation protein HypF [Clostridium cellulolyticum H10] gi|219998243|gb|ACL74844.1| (NiFe) hydrogenase maturation protein HypF [Clostridium cellulolyticum H10] Length = 790 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 53/160 (33%), Gaps = 17/160 (10%) Query: 16 CEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 + + G +A V Y LA D N A+ RL K R P D+ Sbjct: 210 ADLVKKGNIVA-----VKGIGGYHLACDGLNKKAVDRLRTRKHRD-DKPFAVMAKDLRTA 263 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI-E 129 +K+ ++ + ++ P+ ++L+ + + +P L+ E Sbjct: 264 EKYCKINYVEKNILTSTA-SPI-VLLEKKDGVILPESLAHLNRYLGVMLPYTPVHHLLFE 321 Query: 130 TYGHP--LAIPSANRSGQISITNVKHILSSSICKEIPLII 167 G P L + S N S + + + + + Sbjct: 322 EKGFPELLVMTSGNLSNEPIFYKDEEAV-EGLQGIADAYL 360 >gi|168820472|ref|ZP_02832472.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205342891|gb|EDZ29655.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320087245|emb|CBY97010.1| Carbamoyltransferase hypF Carbamoyl phosphate-converting enzyme hypF; [NiFe]-hydrogenase maturation factor hypF; Hydrogenase maturation protein hypF [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 746 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 20/144 (13%) Query: 20 DAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 +AG IA V GL D+RN A+ L K RPA PL + + Sbjct: 211 NAGGIIA-----VKGLGGFHLACDARNANAVAMLRARKHRPA-KPLAVMLPTAQTL---- 260 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGH 133 P + + L P +++D + L +P + L++ + Sbjct: 261 ---PTAAR-SLLTTPAAPIVLVDKQYVPSLSEGIAPGLTEVGVMLPANPLQHLLLQALNY 316 Query: 134 PLAIPSANRSGQISITNVKHILSS 157 PL + S N SG+ + L Sbjct: 317 PLVMTSGNLSGKPPAITNEQALDD 340 >gi|56414794|ref|YP_151869.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363722|ref|YP_002143359.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56129051|gb|AAV78557.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095199|emb|CAR60750.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 746 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 20/144 (13%) Query: 20 DAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 +AG IA V GL D+RN A+ L K RPA PL + + Sbjct: 211 NAGGIIA-----VKGLGGFHLACDARNDNAVAMLRARKHRPA-KPLAVMLPTAQTL---- 260 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGH 133 P + + L P +++D + L +P + L++ + Sbjct: 261 ---PTAAR-SLLTTPAAPIVLVDKQYVPSLSEGIAPGLTEVGVMLPANPLQHLLLQALDY 316 Query: 134 PLAIPSANRSGQISITNVKHILSS 157 PL + S N SG+ + L Sbjct: 317 PLVMTSGNLSGKPPAITNEQALDD 340 >gi|312601592|gb|ADQ90847.1| Putative uncharacterized protein [Mycoplasma hyopneumoniae 168] Length = 272 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 63/169 (37%), Gaps = 33/169 (19%) Query: 29 TETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP--LSL 81 T+TV G+A D + ++ IKKR ++ V+++ +K + Sbjct: 129 TDTVPGIASFYKNCD------LDAIFVIKKRDFSKKIVTLVANLEQIKPLIKQENYKKLK 182 Query: 82 HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSAN 141 + K WPG TL+++ S FR+P + P + SAN Sbjct: 183 KITKKIWPGATTLIIENQS----------------FRIPNQVKLLKLLKKNGPAFVTSAN 226 Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 S + + V +I I + G G S + ++ +K +R Sbjct: 227 ISNEKPLDLVSA--KRKFW-QITKIFNFGPG-TGKVSRVFDLDNKKWIR 271 >gi|90578214|ref|ZP_01234025.1| hydrogenase maturation protein HypF [Vibrio angustum S14] gi|90441300|gb|EAS66480.1| hydrogenase maturation protein HypF [Vibrio angustum S14] Length = 796 Score = 61.6 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 34/182 (18%), Positives = 62/182 (34%), Gaps = 26/182 (14%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPL 60 T A+ + + + G +A V G+ D+ N A+ L ++K R PL Sbjct: 213 ATKQTAIEQLAQKIKDGEIVA-----VKGIGGFHLACDATNAQAVASLRKLKYR-QSKPL 266 Query: 61 ICHVSDISMVKKHAS-VDPLSLHLAKLFWP-----GPLTLVLDLLSTTD--IHPLSTANL 112 + + ++ D LA P L +V + ++ T + N+ Sbjct: 267 AIMAASDDIAQQFVEGCDAEWKALAAQARPIVLMNKRLDIVAEEVTRTGGVLAENVAPNV 326 Query: 113 KTACFRVPCGFTKKLIE------TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLI 166 +P L+ L + SAN SG T + + + +I I Sbjct: 327 PYLGIMLPYTPLHYLLFDELKAIGATSTLVMTSANLSGMPIATELAQVCT-QFSGKISGI 385 Query: 167 ID 168 +D Sbjct: 386 LD 387 >gi|317049966|ref|YP_004117614.1| hypothetical protein Pat9b_3768 [Pantoea sp. At-9b] gi|316951583|gb|ADU71058.1| conserved hypothetical protein [Pantoea sp. At-9b] Length = 259 Score = 61.6 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 39/170 (22%), Positives = 62/170 (36%), Gaps = 20/170 (11%) Query: 14 KACEFL-DAGLPIAIPTETVYGLAVDSRNPTA-IRRLYEIKKRPAMNPLICHVSDISMVK 71 +A E L G I PT+ Y + + A + R +E K R P + + ++ Sbjct: 15 EAIEILAKEGGMIVSPTKVGYII---MTSDKAGLERKFEAKNRNRNKPGVVLCGSLEQLR 71 Query: 72 KHASVDPLSLHLAKLFWPGPLTL--VLDLL-------STTDIHPLSTANLKTACFRV--- 119 A ++P L + W + L +L L +T+CF + Sbjct: 72 SLAQLNPEIDELYQRHWDQDILLGCILPWREDALARIPADGSKELMMDGRQTSCFVIKFG 131 Query: 120 -PCGFTKKLI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 P K + E +G SAN SGQ + V+ + I LII Sbjct: 132 KPGEILAKELWEKHGKFSFASSANPSGQGNRGLVEG-IGERIESRADLII 180 >gi|168262046|ref|ZP_02684019.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168464034|ref|ZP_02697951.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195633530|gb|EDX51944.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|205349051|gb|EDZ35682.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 746 Score = 61.6 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 20/144 (13%) Query: 20 DAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 +AG IA V GL D+RN A+ L K RPA PL + + Sbjct: 211 NAGGIIA-----VKGLGGFHLACDARNDNAVAMLRARKHRPA-KPLAVMLPTAQTL---- 260 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGH 133 P + + L P +++D + L +P + L++ + Sbjct: 261 ---PSAAR-SLLTTPAAPIVLVDKQYVPSLSEGIAPGLTEVGVMLPANPLQHLLLQALNY 316 Query: 134 PLAIPSANRSGQISITNVKHILSS 157 PL + S N SG+ + L Sbjct: 317 PLVMTSGNLSGRPPAITNEQALDD 340 >gi|322614339|gb|EFY11270.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621596|gb|EFY18449.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624457|gb|EFY21290.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628788|gb|EFY25571.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633485|gb|EFY30227.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635939|gb|EFY32647.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639647|gb|EFY36332.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646830|gb|EFY43333.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650598|gb|EFY47003.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654790|gb|EFY51109.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659010|gb|EFY55263.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664423|gb|EFY60617.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668328|gb|EFY64485.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673692|gb|EFY69793.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677753|gb|EFY73816.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681417|gb|EFY77449.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322683819|gb|EFY79829.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323193792|gb|EFZ78995.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200262|gb|EFZ85344.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203235|gb|EFZ88264.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205518|gb|EFZ90483.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212806|gb|EFZ97617.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216332|gb|EGA01059.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221080|gb|EGA05511.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226901|gb|EGA11083.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230815|gb|EGA14933.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234834|gb|EGA18920.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238873|gb|EGA22923.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323241573|gb|EGA25604.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248280|gb|EGA32216.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251136|gb|EGA35009.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256019|gb|EGA39757.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263154|gb|EGA46692.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264341|gb|EGA47847.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271168|gb|EGA54596.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 746 Score = 61.6 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 20/144 (13%) Query: 20 DAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 +AG IA V GL D+RN A+ L K RPA PL + + Sbjct: 211 NAGGIIA-----VKGLGGFHLACDARNDNAVAMLRARKHRPA-KPLAVMLPTAQTL---- 260 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGH 133 P + + L P +++D + L +P + L++ + Sbjct: 261 ---PSAAR-SLLTTPAAPIVLVDKQYVPSLSEGIAPGLTEVGVMLPANPLQHLLLQALNY 316 Query: 134 PLAIPSANRSGQISITNVKHILSS 157 PL + S N SG+ + L Sbjct: 317 PLVMTSGNLSGRPPAITNEQALDD 340 >gi|226939770|ref|YP_002794843.1| HypF [Laribacter hongkongensis HLHK9] gi|226714696|gb|ACO73834.1| HypF [Laribacter hongkongensis HLHK9] Length = 794 Score = 61.6 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 58/159 (36%), Gaps = 29/159 (18%) Query: 17 EFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +FL G +AI GL ++R+ A+ RL +K RP+ PL +++ V+ Sbjct: 226 QFLRMGRCVAIK-----GLGGFHLACNARSAEAVARLRMLKHRPS-RPLAVMALNLASVE 279 Query: 72 KHASVDPLSLHLAKLFWPG-PLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI-- 128 V P L + P P+ L+ P + T +P L+ Sbjct: 280 TFCHVSPEEAALLQS--PKRPIVLLQKRAEADQYLPGIAPGMNTVGVMLPYTPIHWLMFH 337 Query: 129 ETYGHPLAI-------------PSANRSGQISITNVKHI 154 E+ P + SAN SG+ +T+ Sbjct: 338 ESLRRPAGLDWMEAPCADVWVMTSANLSGEPIVTDNDDA 376 >gi|111021595|ref|YP_704567.1| hydrogenase maturation protein [Rhodococcus jostii RHA1] gi|110821125|gb|ABG96409.1| hydrogenase maturation protein [Rhodococcus jostii RHA1] Length = 768 Score = 61.6 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 54/165 (32%), Gaps = 24/165 (14%) Query: 5 SITDSNALRKACE-FLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMN 58 I +A+ A + L G +A V GL D+ NP A+ L K RP Sbjct: 196 RIDGDDAVLTAVQGALRDGRIVA-----VKGLGGFHLVCDAANPVAVETLRARKHRP-DK 249 Query: 59 PLICHVSDISMVKKHASVD-PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 P +D S + + P S L P L+L +T + + Sbjct: 250 PFAVMTADPSAAAELCEISEPESALLRHAARP---ILLLRKKNTASVADGIAPGIDDLGV 306 Query: 118 RVPCGFTKKLI--ETYGHPL------AIPSANRSGQISITNVKHI 154 +P L+ T G + + S N SG+ + Sbjct: 307 MLPYTPLHHLLFTRTPGAGVDPPRVLVMTSGNLSGEPLCFDNDDA 351 >gi|71893997|ref|YP_279443.1| hypothetical protein MHJ_0649 [Mycoplasma hyopneumoniae J] gi|71852124|gb|AAZ44732.1| conserved hypothetical protein [Mycoplasma hyopneumoniae J] Length = 287 Score = 61.6 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 63/169 (37%), Gaps = 33/169 (19%) Query: 29 TETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP--LSL 81 T+TV G+A D + ++ IKKR ++ V+++ +K + Sbjct: 144 TDTVPGIASFYKNCD------LDAIFVIKKRDFSKKIVTLVANLEQIKPLIKQENYKKLK 197 Query: 82 HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSAN 141 + K WPG TL+++ S FR+P + P + SAN Sbjct: 198 KITKKIWPGATTLIIENQS----------------FRIPNQVKLLKLLKKNGPAFVTSAN 241 Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 S + + V +I I + G G S + ++ +K +R Sbjct: 242 ISNEKPLDLVSA--KRKFW-QITKIFNFGPG-TGKVSRVFDLDNKKWIR 286 >gi|304315653|ref|YP_003850798.1| (NiFe) hydrogenase maturation protein HypF [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777155|gb|ADL67714.1| (NiFe) hydrogenase maturation protein HypF [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 748 Score = 61.6 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 55/155 (35%), Gaps = 17/155 (10%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLIC 62 + + ++ E L G +AI G+ ++ + A+ RL E K R PL Sbjct: 201 NDDPIKAVAEDLRDGKIVAIK-----GIGGYHLAVNALSRDAVFRLRERKNR-YGKPLAL 254 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 + DI VKK + + L P+ L+ I L + +P Sbjct: 255 MMKDIDCVKKFCYLSDDEMELLNSQR-RPIVLLKKKHKFEGISD----GLDSVGVMLPYT 309 Query: 123 FTKKLIETY-GHPLAIPSANRSGQISITNVKHILS 156 L+ + P+ + S N S + + + L Sbjct: 310 PIHYLLFEFIDFPIVMTSGNISEEPLCKDNEEALK 344 >gi|62181345|ref|YP_217762.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62128978|gb|AAX66681.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322715828|gb|EFZ07399.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 746 Score = 61.6 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 20/144 (13%) Query: 20 DAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 +AG IA V GL D+RN A+ L K RPA PL + + Sbjct: 211 NAGGIIA-----VKGLGGFHLACDARNDNAVAMLRARKHRPA-KPLAVMLPTAQTL---- 260 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGH 133 P + + L P +++D + L +P + L++ + Sbjct: 261 ---PSAAR-SLLTTPAAPIVLVDKQYVPSLSEGIAPGLTEVGVMLPANPLQHLLLQALNY 316 Query: 134 PLAIPSANRSGQISITNVKHILSS 157 PL + S N SG+ + L Sbjct: 317 PLVMTSGNLSGKPPAITNEQALDD 340 >gi|194444479|ref|YP_002042083.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194403142|gb|ACF63364.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 746 Score = 61.6 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 20/144 (13%) Query: 20 DAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 +AG IA V GL D+RN A+ L K RPA PL + + Sbjct: 211 NAGGIIA-----VKGLGGFHLACDARNDNAVAMLRARKHRPA-KPLAVMLPTAQTL---- 260 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGH 133 P + + L P +++D + L +P + L++ + Sbjct: 261 ---PSAAR-SLLTTPAAPIVLVDKQYVPSLSEGIAPGLTEVGVMLPANPLQHLLLQALNY 316 Query: 134 PLAIPSANRSGQISITNVKHILSS 157 PL + S N SG+ + L Sbjct: 317 PLVMTSGNLSGKPPAITNEQALDD 340 >gi|224584619|ref|YP_002638417.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224469146|gb|ACN46976.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 746 Score = 61.6 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 20/144 (13%) Query: 20 DAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 +AG IA V GL D+RN A+ L K RPA PL + + Sbjct: 211 NAGGIIA-----VKGLGGFHLACDARNDNAVAMLRARKHRPA-KPLAVMLPTAQTL---- 260 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGH 133 P + + L P +++D + L +P + L++ + Sbjct: 261 ---PSAAR-SLLTTPAAPIVLVDKQYVPSLSEGIAPGLTEVGVMLPANPLQHLLLQALNY 316 Query: 134 PLAIPSANRSGQISITNVKHILSS 157 PL + S N SG+ + L Sbjct: 317 PLVMTSGNLSGKPPAITNEQALDD 340 >gi|197261857|ref|ZP_03161931.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197240112|gb|EDY22732.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 746 Score = 61.6 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 20/144 (13%) Query: 20 DAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 +AG IA V GL D+RN A+ L K RPA PL + + Sbjct: 211 NAGGIIA-----VKGLGGFHLACDARNDNAVAMLRARKHRPA-KPLAVMLPTAQTL---- 260 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGH 133 P + + L P +++D + L +P + L++ + Sbjct: 261 ---PSAAR-SLLTTPAAPIVLVDKQYVPSLSEGIAPGLTEVGVMLPANPLQHLLLQALNY 316 Query: 134 PLAIPSANRSGQISITNVKHILSS 157 PL + S N SG+ + L Sbjct: 317 PLVMTSGNLSGKPPAITNEQALDD 340 >gi|207858106|ref|YP_002244757.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|206709909|emb|CAR34262.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 746 Score = 61.6 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 20/144 (13%) Query: 20 DAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 +AG IA V GL D+RN A+ L K RPA PL + + Sbjct: 211 NAGGIIA-----VKGLGGFHLACDARNDNAVAMLRARKHRPA-KPLAVMLPTAQTL---- 260 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGH 133 P + + L P +++D + L +P + L++ + Sbjct: 261 ---PSAAR-SLLTTPAAPIVLVDKQYVPSLSEGIAPGLTEVGVMLPANPLQHLLLQALNY 316 Query: 134 PLAIPSANRSGQISITNVKHILSS 157 PL + S N SG+ + L Sbjct: 317 PLVMTSGNLSGKPPAITNEQALDD 340 >gi|16761619|ref|NP_457236.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143103|ref|NP_806445.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213852357|ref|ZP_03381889.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|25324739|pir||AF0845 hydrogenase maturation protein [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503920|emb|CAD05949.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29138736|gb|AAO70305.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 746 Score = 61.6 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 20/144 (13%) Query: 20 DAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 +AG IA V GL D+RN A+ L K RPA PL + + Sbjct: 211 NAGGIIA-----VKGLGGFHLACDARNDNAVAMLRARKHRPA-KPLAVMLPTAQTL---- 260 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGH 133 P + + L P +++D + L +P + L++ + Sbjct: 261 ---PTAAR-SLLTTPAAPIVLVDKQYVPSLSEGIAPGLTEVGVMLPANPLQHLLLQALNY 316 Query: 134 PLAIPSANRSGQISITNVKHILSS 157 PL + S N SG+ + L Sbjct: 317 PLVMTSGNLSGKPPAITNEQALDD 340 >gi|197249232|ref|YP_002147739.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197212935|gb|ACH50332.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 746 Score = 61.6 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 20/144 (13%) Query: 20 DAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 +AG IA V GL D+RN A+ L K RPA PL + + Sbjct: 211 NAGGIIA-----VKGLGGFHLACDARNDNAVAMLRARKHRPA-KPLAVMLPTAQTL---- 260 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGH 133 P + + L P +++D + L +P + L++ + Sbjct: 261 ---PTAAR-SLLTTPAAPIVLVDKQYVPSLSEGIAPGLTEVGVMLPANPLQHLLLQALNY 316 Query: 134 PLAIPSANRSGQISITNVKHILSS 157 PL + S N SG+ + L Sbjct: 317 PLVMTSGNLSGKPPAITNEQALDD 340 >gi|238909609|ref|ZP_04653446.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 746 Score = 61.6 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 20/144 (13%) Query: 20 DAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 +AG IA V GL D+RN A+ L K RPA PL + + Sbjct: 211 NAGGIIA-----VKGLGGFHLACDARNDNAVAMLRARKHRPA-KPLAVMLPTAQTL---- 260 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGH 133 P + + L P +++D + L +P + L++ + Sbjct: 261 ---PSAAR-SLLTTPAAPIVLVDKQYVPSLSEGIAPGLTEVGVMLPANPLQHLLLQALNY 316 Query: 134 PLAIPSANRSGQISITNVKHILSS 157 PL + S N SG+ + L Sbjct: 317 PLVMTSGNLSGKPPAITNEQALDD 340 >gi|260576157|ref|ZP_05844150.1| (NiFe) hydrogenase maturation protein HypF [Rhodobacter sp. SW2] gi|259021637|gb|EEW24940.1| (NiFe) hydrogenase maturation protein HypF [Rhodobacter sp. SW2] Length = 748 Score = 61.6 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 35/144 (24%), Positives = 54/144 (37%), Gaps = 17/144 (11%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 +A+ A L AG +AI GL D+RN A+ L + K+RPA P + Sbjct: 199 DAVALAVARLKAGQVLAIK-----GLGGFHLACDARNAAAVELLRQRKRRPA-KPFAVMM 252 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123 + + V L L + G V + S + + T +P Sbjct: 253 GE-GDLGGFCEVSDDILGLLR----GAAAPVAVVRSLGKLPEAVAPGMATLGVMLPYTPL 307 Query: 124 TKKLIETYGHPLAIPSANRSGQIS 147 LI+ +G L + S N SG+ Sbjct: 308 HHLLIDGFGGTLVMTSGNLSGEPQ 331 >gi|205353786|ref|YP_002227587.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205273567|emb|CAR38554.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326628894|gb|EGE35237.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 746 Score = 61.6 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 20/144 (13%) Query: 20 DAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 +AG IA V GL D+RN A+ L K RPA PL + + Sbjct: 211 NAGGIIA-----VKGLGGVHLACDARNDNAVAMLRARKHRPA-KPLAVMLPTAQTL---- 260 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGH 133 P + + L P +++D + L +P + L++ + Sbjct: 261 ---PSAAR-SLLTTPAAPIVLVDKQYVPSLSEGIAPGLTEVGVMLPANPLQHLLLQALNY 316 Query: 134 PLAIPSANRSGQISITNVKHILSS 157 PL + S N SG+ + L Sbjct: 317 PLVMTSGNLSGKPPAITNEQALDD 340 >gi|200387000|ref|ZP_03213612.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199604098|gb|EDZ02643.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 746 Score = 61.6 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 20/144 (13%) Query: 20 DAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 +AG IA V GL D+RN A+ L K RPA PL + + Sbjct: 211 NAGGIIA-----VKGLGGFHLACDARNDNAVAMLRARKHRPA-KPLAVMLPTAQTL---- 260 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGH 133 P + + L P +++D + L +P + L++ + Sbjct: 261 ---PSAAR-SLLTTPAAPIVLVDKQYVPSLSEGIAPGLTEVGVMLPANPLQHLLLQALNY 316 Query: 134 PLAIPSANRSGQISITNVKHILSS 157 PL + S N SG+ + L Sbjct: 317 PLVMTSGNLSGKPPAITNEQALDD 340 >gi|213426135|ref|ZP_03358885.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] Length = 746 Score = 61.2 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 20/144 (13%) Query: 20 DAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 +AG IA V GL D+RN A+ L K RPA PL + + Sbjct: 211 NAGGIIA-----VKGLGGFHLACDARNDNAVAMLRARKHRPA-KPLAVMLPTAQTL---- 260 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGH 133 P + + L P +++D + L +P + L++ + Sbjct: 261 ---PTAAR-SLLTTPAAPIVLVDKQYVPSLSEGIAPGLTEVGVMLPANPLQHLLLQALNY 316 Query: 134 PLAIPSANRSGQISITNVKHILSS 157 PL + S N SG+ + L Sbjct: 317 PLVMTSGNLSGKPPAITNEQALDD 340 >gi|116619099|ref|YP_819470.1| putative translation factor (SUA5) [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097946|gb|ABJ63097.1| Putative translation factor (SUA5) [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 262 Score = 61.2 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 43/206 (20%), Positives = 76/206 (36%), Gaps = 25/206 (12%) Query: 14 KACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 +A + L G I PT+ Y + + + R + K R P + + VK+ Sbjct: 18 EAIDILKEDGGMIVSPTKVGYIIMTS--DDQGLERKFAAKNRKRNKPGVVLCGSVEQVKE 75 Query: 73 HASVDPLSLHLAKLFWPGPLTL--VLDLL--STTDIHPLSTANL-----KTACFRV---- 119 A + P + + W + L +L + + I T NL +T+CF + Sbjct: 76 LAQMTPEIEQMYQQHWDEDILLGCILPWKEEAKSKIPNDGTKNLMMDKRETSCFVIKFGT 135 Query: 120 -PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 K++ E YG SAN SG+ + V + I LII+ + S Sbjct: 136 PSENIAKEMWEKYGKFSFASSANPSGKGNRGLVAG-IGDQIENAADLIIEADDY---VAS 191 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKR 204 +Q +K + G+ + + Sbjct: 192 ----IQPDKTLDTRYEQGVMVSMVDE 213 >gi|316931895|ref|YP_004106877.1| (NiFe) hydrogenase maturation protein HypF [Rhodopseudomonas palustris DX-1] gi|315599609|gb|ADU42144.1| (NiFe) hydrogenase maturation protein HypF [Rhodopseudomonas palustris DX-1] Length = 750 Score = 61.2 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 36/172 (20%), Positives = 55/172 (31%), Gaps = 23/172 (13%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 ++ L AG +A+ + Y L D+ N TA+ L K R A P V+ + + Sbjct: 196 SIAGIVACLRAGGIVALKSLGGYHLLCDATNETAVAELRRRKGRDA-KPFAVMVASEASL 254 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI-- 128 + A L P+ L + S + P L +P LI Sbjct: 255 DRLAEASAAERALLSSV-ERPVVL---MKSRGVLAPSVAPGLGALGVMLPYTPLHHLIFH 310 Query: 129 ETYGHP-------------LAIPSANRSGQISITNVKHILSSSICKEIPLII 167 G P L SAN G +T+ + LI+ Sbjct: 311 AAAGSPAGRDWQRAPVDLVLVATSANGGGDPIVTDDA---GRKLAGVADLIV 359 >gi|16766148|ref|NP_461763.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167994144|ref|ZP_02575236.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|16421387|gb|AAL21722.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|205327915|gb|EDZ14679.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261247978|emb|CBG25811.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994963|gb|ACY89848.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159402|emb|CBW18920.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913860|dbj|BAJ37834.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321223394|gb|EFX48460.1| NiFe hydrogenase metallocenter assembly protein HypF [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323131193|gb|ADX18623.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332989714|gb|AEF08697.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 746 Score = 61.2 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 20/144 (13%) Query: 20 DAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 +AG IA V GL D+RN A+ L K RPA PL + + Sbjct: 211 NAGGIIA-----VKGLGGFHLACDARNANAVAMLRARKHRPA-KPLAVMLPTAQTL---- 260 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGH 133 P + + L P +++D + L +P + L++ + Sbjct: 261 ---PSAAR-SLLTTPAAPIVLVDKQYVPSLSEGIAPGLTEVGVMLPANPLQHLLLQELNY 316 Query: 134 PLAIPSANRSGQISITNVKHILSS 157 PL + S N SG+ + L Sbjct: 317 PLVMTSGNLSGKPPAITNEQALDD 340 >gi|213052204|ref|ZP_03345082.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213581557|ref|ZP_03363383.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 637 Score = 61.2 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 20/144 (13%) Query: 20 DAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 +AG IA V GL D+RN A+ L K RPA PL + + Sbjct: 211 NAGGIIA-----VKGLGGFHLACDARNDNAVAMLRARKHRPA-KPLAVMLPTAQTL---- 260 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGH 133 P + + L P +++D + L +P + L++ + Sbjct: 261 ---PTAAR-SLLTTPAAPIVLVDKQYVPSLSEGIAPGLTEVGVMLPANPLQHLLLQALNY 316 Query: 134 PLAIPSANRSGQISITNVKHILSS 157 PL + S N SG+ + L Sbjct: 317 PLVMTSGNLSGKPPAITNEQALDD 340 >gi|168242570|ref|ZP_02667502.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194451590|ref|YP_002046802.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194409894|gb|ACF70113.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205338018|gb|EDZ24782.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 746 Score = 61.2 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 20/144 (13%) Query: 20 DAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 +AG IA V GL D+RN A+ L K RPA PL + + Sbjct: 211 NAGGIIA-----VKGLGGFHLACDARNDNAVAMLRARKHRPA-KPLAVMLPTAQTL---- 260 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGH 133 P + + L P +++D + L +P + L++ + Sbjct: 261 ---PTAAR-SLLTTPAAPIVLVDKQYVPSLSEGIAPGLTEVGVMLPANPLQHLLLQALNY 316 Query: 134 PLAIPSANRSGQISITNVKHILSS 157 PL + S N SG+ + L Sbjct: 317 PLVMTSGNLSGKPPAITNEQALDD 340 >gi|168235872|ref|ZP_02660930.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194735422|ref|YP_002115794.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194710924|gb|ACF90145.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197290813|gb|EDY30167.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 746 Score = 61.2 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 20/144 (13%) Query: 20 DAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 +AG IA V GL D+RN A+ L K RPA PL + + Sbjct: 211 NAGGIIA-----VKGLGGFHLACDARNDNAVAMLRARKHRPA-KPLAVMLPTAQTL---- 260 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGH 133 P + + L P +++D + L +P + L++ + Sbjct: 261 ---PSAAR-SLLTTPAAPIVLVDKQYVPSLSEGIAPGLTEVGVMLPANPLQHLLLQALNY 316 Query: 134 PLAIPSANRSGQISITNVKHILSS 157 PL + S N SG+ + L Sbjct: 317 PLVMTSGNLSGKPPAITNEQALDD 340 >gi|315124141|ref|YP_004066145.1| NiFe [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315017863|gb|ADT65956.1| NiFe [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 728 Score = 61.2 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 58/167 (34%), Gaps = 18/167 (10%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 D A ++ +FL G +AI G+ D+ N A++ L K RP P Sbjct: 200 DQEAFIQSAKFLKEGKILAIK-----GMGGFHLMCDAFNEEALKTLRLRKNRP-KKPFAL 253 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 D+ K+ A +D L P+ ++ + + I P + Sbjct: 254 MCKDLQSAKELAFIDEKEEALLGGVL-APIVILKAKKAFSLIAPDV----DKIGIMLAYT 308 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 L E + L SAN SG+ I + L + K +D Sbjct: 309 PLHLLLFEYFKGSLVATSANLSGESIIK-DEFNLRQKLDKVFDFYLD 354 >gi|284925883|gb|ADC28235.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter jejuni subsp. jejuni IA3902] Length = 729 Score = 61.2 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 58/167 (34%), Gaps = 18/167 (10%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 D A ++ +FL G +AI G+ D+ N A++ L K RP P Sbjct: 200 DQEAFIQSAKFLKEGKILAIK-----GMGGFHLMCDAFNEEALKTLRLRKNRP-KKPFAL 253 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 D+ K+ A +D L P+ ++ + + I P + Sbjct: 254 MCKDLQSAKELAFIDEKEEALLGGVL-APIVILKAKKAFSLIAPDV----DKIGIMLAYT 308 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 L E + L SAN SG+ I + L + K +D Sbjct: 309 PLHLLLFEYFKGSLVATSANLSGESIIK-DEFNLRQKLDKVFDFYLD 354 >gi|198244103|ref|YP_002216813.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197938619|gb|ACH75952.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326624572|gb|EGE30917.1| NiFe hydrogenase maturation protein HypF [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 746 Score = 61.2 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 20/144 (13%) Query: 20 DAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 +AG IA V GL D+RN A+ L K RPA PL + + Sbjct: 211 NAGGIIA-----VKGLGGFHLACDARNDNAVAMLRARKHRPA-KPLAVMLPTAQTL---- 260 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGH 133 P + + L P +++D + L +P + L++ + Sbjct: 261 ---PTAAR-SLLTTPAAPIVLVDKQYIPSLSEGIAPGLTEVGVMLPANPLQHLLLQELNY 316 Query: 134 PLAIPSANRSGQISITNVKHILSS 157 PL + S N SG+ + L Sbjct: 317 PLVMTSGNLSGRPPAITNEQALDD 340 >gi|86153323|ref|ZP_01071527.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter jejuni subsp. jejuni HB93-13] gi|85843049|gb|EAQ60260.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter jejuni subsp. jejuni HB93-13] Length = 729 Score = 61.2 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 58/167 (34%), Gaps = 18/167 (10%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 D A ++ +FL G +AI G+ D+ N A++ L K RP P Sbjct: 200 DQEAFIQSAKFLKEGKILAIK-----GMGGFHLMCDAFNEEALKTLRLRKNRP-KKPFAL 253 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 D+ K+ A +D L P+ ++ + + I P + Sbjct: 254 MCKDLQSAKELAFIDEKEEALLGGVL-APIVILKAKKAFSLIAPDV----DKIGIMLAYT 308 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 L E + L SAN SG+ I + L + K +D Sbjct: 309 PLHLLLFEYFKGSLVATSANLSGESIIK-DEFNLRQKLDKVFDFYLD 354 >gi|291288874|ref|YP_003505690.1| (NiFe) hydrogenase maturation protein HypF [Denitrovibrio acetiphilus DSM 12809] gi|290886034|gb|ADD69734.1| (NiFe) hydrogenase maturation protein HypF [Denitrovibrio acetiphilus DSM 12809] Length = 745 Score = 61.2 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 56/155 (36%), Gaps = 22/155 (14%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 +A+ A E +D+G IA V GL D+ ++ L +KKRP PL Sbjct: 193 QDAIDHAAEIIDSGGIIA-----VKGLGGYHLICDATQDIPVKTLRNLKKRP-DKPLAVM 246 Query: 64 VSDISMVKKHASVDPLSLHLAKLF-WPGPLTLVL--DLLSTTDIHPLSTANLKTACFRVP 120 ++K+ P KLF P +++ L + + N+ P Sbjct: 247 C-SYETIQKYCDDAPS----LKLFCSPQAPIVIMKVPDLPVSAFANPMSPNVGCIAPYTP 301 Query: 121 CGFTKKLIETYGH-PLAIPSANRSGQISITNVKHI 154 + L++T L S NR + + + Sbjct: 302 LH--RVLMKTCKSDFLIATSGNRKDEPIAKDEREA 334 >gi|213855332|ref|ZP_03383572.1| hypothetical protein SentesT_15207 [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 73 Score = 61.2 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 1/72 (1%) Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 + L+E G P+ S G + + + K++ LII GG +T++++ Sbjct: 1 QALLEALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGGYLGQ-KPTTVIDLT 59 Query: 185 CEKKVRILRPGG 196 + V + G Sbjct: 60 DDTPVVVREGVG 71 >gi|14590753|ref|NP_142823.1| transcriptional regulatory protein hypF [Pyrococcus horikoshii OT3] gi|3257308|dbj|BAA29991.1| 773aa long hypothetical transcriptional regulatory protein hypF [Pyrococcus horikoshii OT3] Length = 773 Score = 61.2 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 55/158 (34%), Gaps = 23/158 (14%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAI----RRLYEIKKRPAMNPL 60 + LRKA + +D G +AI G+ D+ + +R++ RP P Sbjct: 202 DPLRKAAKLIDKGYIVAIK-----GIGGIHLACDATREDVVVELRKRIF----RPQ-KPF 251 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 D+ ++ A V P + P+ + L + L T +P Sbjct: 252 AIMAKDLETIRTFAYVSPEEEEELTSYR-RPI-VALKKKEPFPLPENLAPGLHTIGVMLP 309 Query: 121 CGFTKKLIETYG-HPL-AIPSANRSGQISITNVKHILS 156 T ++ + P+ + SAN G I + + Sbjct: 310 YAGTHYILFHWSETPVYVMTSANFPGMPMIKDNEEAFE 347 >gi|259909880|ref|YP_002650236.1| putative translation factor [Erwinia pyrifoliae Ep1/96] gi|224965502|emb|CAX57034.1| putative translation factor [Erwinia pyrifoliae Ep1/96] gi|283479964|emb|CAY75880.1| hypothetical protein EPYR_03500 [Erwinia pyrifoliae DSM 12163] Length = 259 Score = 61.2 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 38/169 (22%), Positives = 63/169 (37%), Gaps = 18/169 (10%) Query: 14 KACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 +A + L G I PT+ Y + + + R ++ K+R P + + +K+ Sbjct: 15 EAVKILSANGGMIVCPTKVGYIIMTS--DAKGLERKFDAKQRNRNKPGVVLCGSLEQLKE 72 Query: 73 HASVDPLSLHLAKLFWPGP--LTLVLDLL-------STTDIHPLSTANLKTACFR----V 119 A ++P L + W L +L L +T+CF V Sbjct: 73 LAQLNPEIEALYQQHWDKDVLLGCILPWKEEAVARIPDDGSKELMMDRRQTSCFVIKFGV 132 Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 P K L E +G SAN SG+ + V+ + I + LII Sbjct: 133 PGENLAKALWENHGKFSFASSANPSGKGNRGLVEG-IGERIEQHADLII 180 >gi|167550320|ref|ZP_02344077.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205324892|gb|EDZ12731.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 746 Score = 61.2 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 20/144 (13%) Query: 20 DAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 +AG IA V GL D+RN A+ L K RPA PL + + Sbjct: 211 NAGGIIA-----VKGLGGFHLACDARNDNAVAMLRARKHRPA-KPLAVMLPTAQTL---- 260 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGH 133 P + + L P +++D + L +P + L++ + Sbjct: 261 ---PSAAR-SLLTTPAAPIVLVDKQYVPSLSEGIAPGLTEVGVMLPANPLQHLLLQELNY 316 Query: 134 PLAIPSANRSGQISITNVKHILSS 157 PL + S N SG+ + L Sbjct: 317 PLVMTSGNLSGKPPAITNEQALDD 340 >gi|57641932|ref|YP_184410.1| hydrogenase maturation protein HypF [Thermococcus kodakarensis KOD1] gi|57160256|dbj|BAD86186.1| hydrogenase maturation protein HypF [Thermococcus kodakarensis KOD1] Length = 772 Score = 61.2 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 38/201 (18%), Positives = 66/201 (32%), Gaps = 15/201 (7%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 + LRKA E +D G +AI G+ D+ N + L RP P Sbjct: 201 DPLRKAAELIDKGYIVAIK-----GIGGIHLACDAANEEVVAELRRRTFRPQ-KPFAIMA 254 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 DI VK A V P + P+ + L + L T +P T Sbjct: 255 KDIETVKSFAYVSPEEEEELTSYR-RPI-ITLRKKEPFPLPENLAPGLHTIGVMLPYAGT 312 Query: 125 KKLIETYGH-PL-AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 ++ + P+ + SAN G + + + ++ + +++ Sbjct: 313 HYILFHWSKTPVYVMTSANYPGMPMVKDNERAFEELKDVADYFLLHNRKILNRADDSVIR 372 Query: 183 VQCEKKVRILRPGGLEIETLK 203 K+ I R G ++ Sbjct: 373 FVDGKRAVIRRSRGFVPLPIE 393 >gi|323477028|gb|ADX82266.1| (NiFe) hydrogenase maturation protein HypF [Sulfolobus islandicus HVE10/4] Length = 741 Score = 61.2 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 38/189 (20%), Positives = 69/189 (36%), Gaps = 17/189 (8%) Query: 16 CEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 + ++ G IAI G+ D N + +L E K RP P D+ V Sbjct: 209 VKLIEEGYIIAIK-----GIGGFHIAADPFNDDVVLKLRERKNRPQ-KPFAVMALDLPTV 262 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130 +K+A V L L K P ++L ++ + +L F + L+ Sbjct: 263 EKYAYVSNLERELLKS--PQKPIVLLKKKEPYELSKYLSPDLDREGFFLFYTAVHYLLLD 320 Query: 131 Y--GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIVNVQCEK 187 Y H L + S N+ G + + I I+ + + ++ +++ V + Sbjct: 321 YMKNHVLIMTSGNKHGYPMCI-DEKCAREKLKGVIDYILYHNRNIVNRVDDSVIRVSANR 379 Query: 188 KVRILRPGG 196 + I R G Sbjct: 380 VMFIRRSRG 388 >gi|303229635|ref|ZP_07316423.1| carbamoyltransferase HypF [Veillonella atypica ACS-134-V-Col7a] gi|302515760|gb|EFL57714.1| carbamoyltransferase HypF [Veillonella atypica ACS-134-V-Col7a] Length = 765 Score = 61.2 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 65/201 (32%), Gaps = 15/201 (7%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 + A E + G IA+ G+ D+ N A++ L E K R P Sbjct: 211 DDCFETAREMISNGAIIALK-----GIGGYHLVCDATNDKAVQTLRERKHR-KDKPFAIM 264 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS-TTDIHPLSTANLKTACFRVPCG 122 I +V+ A V L P+ L+ + I L N +P Sbjct: 265 AGSIDIVEDFAVVSDGDLDALSA-MARPIVLLEKNDNFHASISELVAPNNHLIGVMLPYA 323 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIV 181 ++ + + S N G I + + S + + ++ +IV Sbjct: 324 PIHHVLVPHDAKWVMTSGNARGDSVIYDDEKAFSE-LQTIADYFLTHNRQIYAPVDDSIV 382 Query: 182 NVQCEKKVRILRPGGLEIETL 202 +V + + I R G E + Sbjct: 383 SVVEDTPILIRRSRGYIPEPI 403 >gi|213029430|ref|ZP_03343877.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 550 Score = 61.2 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 20/144 (13%) Query: 20 DAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 +AG IA V GL D+RN A+ L K RPA PL + + Sbjct: 211 NAGGIIA-----VKGLGGFHLACDARNDNAVAMLRARKHRPA-KPLAVMLPTAQTL---- 260 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGH 133 P + + L P +++D + L +P + L++ + Sbjct: 261 ---PTAAR-SLLTTPAAPIVLVDKQYVPSLSEGIAPGLTEVGVMLPANPLQHLLLQALNY 316 Query: 134 PLAIPSANRSGQISITNVKHILSS 157 PL + S N SG+ + L Sbjct: 317 PLVMTSGNLSGKPPAITNEQALDD 340 >gi|294676323|ref|YP_003576938.1| hydrogenase maturation protein HypF [Rhodobacter capsulatus SB 1003] gi|729796|sp|Q02987|HYPF_RHOCA RecName: Full=Carbamoyltransferase hypF; AltName: Full=Carbamoyl phosphate-converting enzyme hypF; AltName: Full=[NiFe]-hydrogenase maturation factor hypF; Short=Hydrogenase maturation protein hypF gi|46050|emb|CAA78795.1| hypF [Rhodobacter capsulatus] gi|294475143|gb|ADE84531.1| hydrogenase maturation protein HypF [Rhodobacter capsulatus SB 1003] Length = 739 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 30/144 (20%), Positives = 53/144 (36%), Gaps = 17/144 (11%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 +A+ A L AG +A V GL D+ N A+ L K+RPA P Sbjct: 194 DAIGLAAARLKAGEILA-----VKGLGGFHLACDATNADAVDLLRARKRRPA-KPFALMA 247 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123 + + + +V P +L + P ++ + + + + +P Sbjct: 248 RE-EDLARIVAVSPAALAALRD----PAAPIVLMPARGSLPETLAPGMAELGVMLPYTPL 302 Query: 124 TKKLIETYGHPLAIPSANRSGQIS 147 L++ +G L + S N SG Sbjct: 303 HHLLLDAFGGVLVMTSGNLSGAPQ 326 >gi|289803763|ref|ZP_06534392.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 463 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 20/144 (13%) Query: 20 DAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 +AG IA V GL D+RN A+ L K RPA PL + + Sbjct: 211 NAGGIIA-----VKGLGGFHLACDARNDNAVAMLRARKHRPA-KPLAVMLPTAQTL---- 260 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGH 133 P + + L P +++D + L +P + L++ + Sbjct: 261 ---PTAAR-SLLTTPAAPIVLVDKQYVPSLSEGIAPGLTEVGVMLPANPLQHLLLQALNY 316 Query: 134 PLAIPSANRSGQISITNVKHILSS 157 PL + S N SG+ + L Sbjct: 317 PLVMTSGNLSGKPPAITNEQALDD 340 >gi|161615743|ref|YP_001589708.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161365107|gb|ABX68875.1| hypothetical protein SPAB_03534 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 746 Score = 60.8 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 50/144 (34%), Gaps = 20/144 (13%) Query: 20 DAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 +AG IA V GL D+RN A+ L K RPA PL + Sbjct: 211 NAGGIIA-----VKGLGGFHLACDARNDNAVAMLRARKHRPA-KPLAVMFPTAQTL---- 260 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGH 133 P + + L P +++D + L +P + L++ + Sbjct: 261 ---PSAAR-SLLTTPAAPIVLVDKQYVPSLSEGIAPGLTEVGVMLPANPLQHLLLQALNY 316 Query: 134 PLAIPSANRSGQISITNVKHILSS 157 PL + S N SG+ + L Sbjct: 317 PLVMTSGNLSGKPPAITNEQALDD 340 >gi|167814479|ref|ZP_02446159.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 91] Length = 72 Score = 60.8 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 23/61 (37%) Query: 257 IKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLE 316 +A ++ A L+ ++ D + + I +P+ A+N+RL Sbjct: 3 AGAWAHAAGVHFVAAPEDPAAYARELYGLLRALDRAQVARILVEKLPDTAEWTAVNDRLG 62 Query: 317 R 317 R Sbjct: 63 R 63 >gi|78188511|ref|YP_378849.1| hydrogenase maturation protein HypF [Chlorobium chlorochromatii CaD3] gi|78170710|gb|ABB27806.1| Hydrogenase maturation protein HypF [Chlorobium chlorochromatii CaD3] Length = 749 Score = 60.8 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 56/155 (36%), Gaps = 16/155 (10%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICH 63 + L + L G +AI G+ D+ N A+ RL + K R A P Sbjct: 199 DDPLEETASLLHHGAIVAIK-----GIGGFHVAVDALNDDAVLRLRKSKGREA-KPFAVM 252 Query: 64 VSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 + D+++V+++ V+ L P ++L L+ T + + +P Sbjct: 253 MRDVAVVERYCMVNDDERQALLSAEAP---IVLLKKLANTQLAASVAPDNDRLGVMLPYT 309 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILS 156 L + L + SAN S + + L Sbjct: 310 PLHLLLFDRVPEVLVMTSANMSEEPMVHENSEALQ 344 >gi|297616579|ref|YP_003701738.1| (NiFe) hydrogenase maturation protein HypF [Syntrophothermus lipocalidus DSM 12680] gi|297144416|gb|ADI01173.1| (NiFe) hydrogenase maturation protein HypF [Syntrophothermus lipocalidus DSM 12680] Length = 776 Score = 60.8 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 32/150 (21%), Positives = 54/150 (36%), Gaps = 19/150 (12%) Query: 16 CEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 E L G +A V GL D++N A+R L KKR A P DI Sbjct: 225 IELLKRGYIVA-----VKGLGGFHLAADAKNRDAVRSLRHRKKREA-KPFAVMARDIEAA 278 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCGFTKKLIE 129 +++ ++P+ P ++L+ + L + T +P L+ Sbjct: 279 RRYCHINPVEEQWLTS--PAAPIVILERNWDGLLPDELIHPGIDTIGVMLPYTPLHYLL- 335 Query: 130 TYGHP---LAIPSANRSGQISITNVKHILS 156 + L + SAN + + I + L Sbjct: 336 -FDGELDLLIMTSANITDEPLIIDNSEALF 364 >gi|289823883|ref|ZP_06543489.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 355 Score = 60.8 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 20/144 (13%) Query: 20 DAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 +AG IA V GL D+RN A+ L K RPA PL + + Sbjct: 211 NAGGIIA-----VKGLGGFHLACDARNDNAVAMLRARKHRPA-KPLAVMLPTAQTL---- 260 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGH 133 P + + L P +++D + L +P + L++ + Sbjct: 261 ---PTAAR-SLLTTPAAPIVLVDKQYVPSLSEGIAPGLTEVGVMLPANPLQHLLLQALNY 316 Query: 134 PLAIPSANRSGQISITNVKHILSS 157 PL + S N SG+ + L Sbjct: 317 PLVMTSGNLSGKPPAITNEQALDD 340 >gi|94987149|ref|YP_595082.1| hydrogenase maturation factor [Lawsonia intracellularis PHE/MN1-00] gi|94731398|emb|CAJ54761.1| Hydrogenase maturation factor [Lawsonia intracellularis PHE/MN1-00] Length = 796 Score = 60.8 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 33/163 (20%), Positives = 60/163 (36%), Gaps = 24/163 (14%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 +S A+ A E++ G IA+ G+ D+ N + L K RP PL Sbjct: 211 NSEAILLAIEYIYKGKIIAMK-----GIGGFHLICDATNADVVNTLRYRKNRP-DKPLAV 264 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-- 120 V +I++ ++ A + + + + P ++L + + + ++ T +P Sbjct: 265 MVPNINIARQIAYISEVEIQKMQS--PECPIVILKAIPHS-LPKNIAPDVSTIGLMLPYT 321 Query: 121 --CGFTK------KLIETYGHPLAIPSANRSGQISITNVKHIL 155 +E L + SAN SG I N L Sbjct: 322 PLHHILCNTLTKVAELERIIPALVMTSANVSGGTIIYNNDDAL 364 >gi|325568779|ref|ZP_08145072.1| putative translation factor (SUA5) [Enterococcus casseliflavus ATCC 12755] gi|325157817|gb|EGC69973.1| putative translation factor (SUA5) [Enterococcus casseliflavus ATCC 12755] Length = 263 Score = 60.8 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 69/172 (40%), Gaps = 18/172 (10%) Query: 13 RKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 ++A +L+ G I PT+ Y +AV + + R + K R P + S + + Sbjct: 18 QRAINYLNEEGKVIVCPTKVGYIIAVS--DKKGLERKFSAKNRKRNKPGVVLCSSLEQLH 75 Query: 72 KHASVDPLSLHLAKLFWPGPLTL--VLDLL-------STTDIHPLSTANLKTACFR---- 118 + A ++ + + + W + +L L T T+CF Sbjct: 76 ELAELNAETAAVYETCWNNDVLFGAILPWKESGKAYIPKDGSEELMTDVRGTSCFVIKFG 135 Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169 VP +K+L + L SAN SG+ + V+ + I +E LII+G Sbjct: 136 VPGEQISKELWDQKKKLLFASSANPSGKGNRGLVEG-IGEQIAQEADLIIEG 186 >gi|229490816|ref|ZP_04384651.1| [NiFe] hydrogenase maturation protein HypF [Rhodococcus erythropolis SK121] gi|229322206|gb|EEN87992.1| [NiFe] hydrogenase maturation protein HypF [Rhodococcus erythropolis SK121] Length = 762 Score = 60.8 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 60/174 (34%), Gaps = 21/174 (12%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59 ++T AL +A L G +A V G+ D+R+ A+ L E K R A P Sbjct: 196 AVTGEGALLRARSLLRDGKILA-----VKGIGGFHLACDARDDRAVHELRERKHR-ASKP 249 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 L V D+ ++ V P+ LV S + PL + + Sbjct: 250 LAVMVRDVPEARELGVVGDAEADAMYS-RERPIVLVAK-ASGYALSPLIAPGIPDIGIML 307 Query: 120 PCGFTKKLIE----TYGHP--LAIPSANRSGQISITNVKHILSSSICKEIPLII 167 + L+ P L + SAN G+ + + + + ++ Sbjct: 308 AYNPIQHLLLGLAGEAAGPAVLVMTSANIGGEPILYSDNDL--ERLGDLADGVL 359 >gi|54295309|ref|YP_127724.1| hydrogenase maturation protein HypF [Legionella pneumophila str. Lens] gi|53755141|emb|CAH16634.1| Hydrogenase maturation protein HypF [Legionella pneumophila str. Lens] Length = 741 Score = 60.8 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 75/225 (33%), Gaps = 33/225 (14%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 ++ K + + G IA+ GL D+RN I +L K R A P V+ Sbjct: 189 SVDKVAQRIQEGEIIALK-----GLGGYQLICDARNEETISKLRLRKNREA-KPFALMVA 242 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125 ++ ++ A V + L P +VL + L +P Sbjct: 243 NVKSAEEIAEVSCQA-RLVLESRERP--IVLLRKKKAPLPDGIAPGLNHFGIMLPSTPLH 299 Query: 126 KLI--ETYGHP-------------LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 L+ G+P L + SAN G+ I + K + II Sbjct: 300 YLLFNSFLGNPDYCQWLDEYHFMVLVVTSANIGGEPLIIDDKKA-EQGLNSIADKIISHD 358 Query: 171 ISKIG-LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV 214 I + ++V + + V I R G L+ + E+ V Sbjct: 359 REIITRTDDSVVRMINDTSVLIRRARGYVPAPLR--LPYEIPPTV 401 >gi|169831797|ref|YP_001717779.1| (NiFe) hydrogenase maturation protein HypF [Candidatus Desulforudis audaxviator MP104C] gi|169638641|gb|ACA60147.1| (NiFe) hydrogenase maturation protein HypF [Candidatus Desulforudis audaxviator MP104C] Length = 773 Score = 60.8 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 5/103 (4%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 L D++N A+R L K R A P D ++V+++ ++ L P + Sbjct: 238 LVCDAQNRDALRELRRRKGRDA-KPFAVMARDPAVVERYCHLNDQERELLTS--PEAPIV 294 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAI 137 +L TD+ P LKT +P L+ + P + Sbjct: 295 ILKRRPGTDLPPELAPGLKTLGVMLPYTPLHFLV--FTGPFDL 335 >gi|16331356|ref|NP_442084.1| HypF family transcriptional regulator [Synechocystis sp. PCC 6803] gi|3024006|sp|Q55638|HYPF_SYNY3 RecName: Full=Carbamoyltransferase hypF; AltName: Full=Carbamoyl phosphate-converting enzyme hypF; AltName: Full=[NiFe]-hydrogenase maturation factor hypF; Short=Hydrogenase maturation protein hypF gi|1001527|dbj|BAA10154.1| transcriptional regulatory protein; HypF [Synechocystis sp. PCC 6803] Length = 767 Score = 60.8 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 33/199 (16%), Positives = 69/199 (34%), Gaps = 14/199 (7%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 AL A + L G IAI GL D+ + A+ +L K RP PL Sbjct: 201 EALNFAVDNLKVGNIIAIK-----GLGGFHLCCDATDFEAVEKLRLRKHRP-DKPLAVMY 254 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123 ++ + +H + L + L + P+ ++L+ + + Sbjct: 255 GNLGQIVEHYQPNNLEVELLQSAA-API-VLLNKKKQLILVENIAPGNPRVGVMLAYTPL 312 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 L++ P+ S N +G+ + L+ ++ ++ ++V + Sbjct: 313 HHLLLKKLKKPMVATSGNLAGEQICIDNIDALTRLQNIADGFLVHDRPIVCPVDDSVVQI 372 Query: 184 QCEKKVRILRPGGLEIETL 202 K + + R G + + Sbjct: 373 VAGKPLFLRRARGYAPQPI 391 >gi|303253086|ref|ZP_07339236.1| hydrogenase maturation factor [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307248363|ref|ZP_07530386.1| hypothetical protein appser2_13390 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302648071|gb|EFL78277.1| hydrogenase maturation factor [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306855101|gb|EFM87281.1| hypothetical protein appser2_13390 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 767 Score = 60.5 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 58/154 (37%), Gaps = 17/154 (11%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 +A+ +A E L G +A V GL D+ I L K RP+ P V Sbjct: 209 SAILEAVEKLRQGCIVA-----VKGLGGFHLACDATQAKTIDLLRRRKTRPS-KPFAVMV 262 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 +++ + + + L L + P+ ++L +H +L +P Sbjct: 263 PNLNWLTELTEEERLLLQSSAA----PI-VLLAKHKVRGVHEFVAPDLAEIGIMLPSNPL 317 Query: 125 KKLIE-TYGHPLAIPSANRSGQISITNVKHILSS 157 + L+ PL + SAN+SG + + S Sbjct: 318 QHLLMHEVNMPLVMTSANQSGLPPVLDNDDAFSQ 351 >gi|18976931|ref|NP_578288.1| hydrogenase expression/formation regulatory protein [Pyrococcus furiosus DSM 3638] gi|18892549|gb|AAL80683.1| hydrogenase expression/formation regulatory protein [Pyrococcus furiosus DSM 3638] Length = 779 Score = 60.5 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 54/158 (34%), Gaps = 23/158 (14%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIR----RLYEIKKRPAMNPL 60 + LRKA + +D G +AI G+ D+ + R++ RP P Sbjct: 208 DPLRKAAKLIDKGYIVAIK-----GIGGIHLACDATREDVVAELRKRIF----RPQ-KPF 257 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 D+ V+ A + P + P+ + L + L T +P Sbjct: 258 AIMAKDLETVRTFAYISPEEEEELTSYR-RPI-VALKKKEPFPLPENLAPGLHTIGVMLP 315 Query: 121 CGFTKKLIETYGH-PL-AIPSANRSGQISITNVKHILS 156 T ++ + P+ + SAN G I + + Sbjct: 316 YAGTHYILFHWSKTPVYVMTSANFPGMPMIKDNEEAFE 353 >gi|167909745|ref|ZP_02496836.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 112] Length = 62 Score = 60.5 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 19/44 (43%) Query: 274 KLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLER 317 A L+ ++ D + + I +P+ A+N+RL R Sbjct: 10 DPAAYARELYGLLRALDRAQVARILVEKLPDTAEWTAVNDRLGR 53 >gi|167893039|ref|ZP_02480441.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 7894] Length = 70 Score = 60.5 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 23/61 (37%) Query: 257 IKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLE 316 +A ++ A L+ ++ D + + I +P+ A+N+RL Sbjct: 1 AGAWAHAAGVHFVAAPEDPAAYARELYGLLRALDRAQVARILVEKLPDTAEWTAVNDRLG 60 Query: 317 R 317 R Sbjct: 61 R 61 >gi|330007987|ref|ZP_08306131.1| carbamoyltransferase HypF [Klebsiella sp. MS 92-3] gi|328535261|gb|EGF61752.1| carbamoyltransferase HypF [Klebsiella sp. MS 92-3] Length = 744 Score = 60.5 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 53/155 (34%), Gaps = 20/155 (12%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 AL+ A L AG +AI G+ D+ NP A+ L K RPA PL Sbjct: 195 EAALQAAIARLAAGKIVAIK-----GIGGFHLACDAGNPAAVATLRARKHRPA-KPLAVM 248 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 + + + + L P +++ + + L +P Sbjct: 249 LPTATGL------PAAAAALMGS--PAAPIVLIAKAQVSSLCDEIAPGLAEVGVMLPSNP 300 Query: 124 TKKLIET-YGHPLAIPSANRSGQISITNVKHILSS 157 + L+ P+ + S N SG+ + L+ Sbjct: 301 LQHLLLQGLARPIVMTSGNLSGRPPALSNAQALNE 335 >gi|257867316|ref|ZP_05646969.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257873649|ref|ZP_05653302.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] gi|257877394|ref|ZP_05657047.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] gi|257801372|gb|EEV30302.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257807813|gb|EEV36635.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] gi|257811560|gb|EEV40380.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] Length = 260 Score = 60.5 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 69/172 (40%), Gaps = 18/172 (10%) Query: 13 RKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 ++A +L+ G I PT+ Y +AV + + R + K R P + S + + Sbjct: 15 QRAINYLNEEGKVIVCPTKVGYIIAVS--DKKGLERKFSAKNRKRNKPGVVLCSSLEQLH 72 Query: 72 KHASVDPLSLHLAKLFWPGPLTL--VLDLL-------STTDIHPLSTANLKTACFR---- 118 + A ++ + + + W + +L L T T+CF Sbjct: 73 ELAELNAETAAVYETCWNNDVLFGAILPWKESGKAYIPNDGSEELMTDVRGTSCFVIKFG 132 Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169 VP +K+L + L SAN SG+ + V+ + I +E LII+G Sbjct: 133 VPGEQISKELWDQKKKLLFASSANPSGKGNRGLVEG-IGEQIAQEADLIIEG 183 >gi|189426114|ref|YP_001953291.1| (NiFe) hydrogenase maturation protein HypF [Geobacter lovleyi SZ] gi|189422373|gb|ACD96771.1| (NiFe) hydrogenase maturation protein HypF [Geobacter lovleyi SZ] Length = 740 Score = 60.5 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 35/196 (17%), Positives = 75/196 (38%), Gaps = 17/196 (8%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICH 63 ++ L +A L GL +AI GL D+ N A+ RL + K+R P Sbjct: 188 ADPLGQAIALLQQGLIVAIK-----GLGGYHLAVDACNNQAVARLRQRKQRDE-KPFAVM 241 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 V D+ ++ A ++ L L P +++ + T + L + + + Sbjct: 242 VPDLVTARQLAELEELEERLLAA--PEAPVVIVRSRTATPVAELVAPDSRWIGLMLAYTP 299 Query: 124 TKKLIETYGH--PLAIPSANRSGQISITNVKHILSSSICKEIPLII-DGGISKIGLESTI 180 +L+ L + SAN S + +++ + + I+ + ++ + ++ Sbjct: 300 LHQLLFADTGLKALVMTSANASDEPMLSDDAEA-AEQLAGIADAILTHNRVIQVRTDDSV 358 Query: 181 VNVQCEKKVRILRPGG 196 + V + + R G Sbjct: 359 LRVFQGRPLFYRRSRG 374 >gi|317493797|ref|ZP_07952214.1| hydrogenase maturation protein HypF [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918124|gb|EFV39466.1| hydrogenase maturation protein HypF [Enterobacteriaceae bacterium 9_2_54FAA] Length = 772 Score = 60.5 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 57/166 (34%), Gaps = 16/166 (9%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICH 63 L +A L G +A V L D+ AI+ L + K+R P Sbjct: 206 PEPLAQARRMLRDGQILA-----VKSLGGFHLSVDATQENAIKLLRQRKRRD-DKPFAIM 259 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 V D++ V++ V + P+ ++L S + + +P Sbjct: 260 VKDMATVRRFCEVSSEEERYLQSH-QRPI-VILKKRSDCSLPDAIAPANPSLGVMLPSAP 317 Query: 124 TKKLIETYGH--PLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 L+ L + SANRSG + + ++ + + + + Sbjct: 318 LHYLLLDDTALPALVMTSANRSGNPIVFRNEEAVAE-LGQIADVFL 362 >gi|157414902|ref|YP_001482158.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter jejuni subsp. jejuni 81116] gi|157385866|gb|ABV52181.1| transcriptional regulatory protein hypF [Campylobacter jejuni subsp. jejuni 81116] gi|307747540|gb|ADN90810.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter jejuni subsp. jejuni M1] Length = 729 Score = 60.5 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 58/167 (34%), Gaps = 18/167 (10%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 D A ++ +FL G +AI G+ D+ N A++ L K RP P Sbjct: 200 DQEAFMQSAKFLKEGKILAIK-----GIGGFHLMCDAFNEEALKTLRLRKNRP-KKPFAL 253 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 D+ K+ A +D L P+ ++ + + I P + Sbjct: 254 MCKDLQSAKELAFIDEKEEALLGGVL-APIVILKAKKAFSLIAPDV----DKIGIMLAYT 308 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 L E + L SAN SG+ I + L + K +D Sbjct: 309 PLHLLLFEYFKGSLVATSANLSGESIIK-DEFNLCKKLDKVFDFYLD 354 >gi|218562273|ref|YP_002344052.1| carbamoyltransferase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|112359979|emb|CAL34768.1| carbamoyltransferase [Campylobacter jejuni subsp. jejuni NCTC 11168] Length = 729 Score = 60.5 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 58/167 (34%), Gaps = 18/167 (10%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 D A ++ +FL G +AI G+ D+ N A++ L K RP P Sbjct: 200 DQEAFMQSAKFLKEGKILAIK-----GIGGFHLMCDAFNEEALKTLRLRKNRP-KKPFAL 253 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 D+ K+ A +D L P+ ++ + + I P + Sbjct: 254 MCKDLQSAKELAFIDEKEEALLGGVL-APIVILKAKKAFSLIAPDV----DKIGIMLAYT 308 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 L E + L SAN SG+ I + L + K +D Sbjct: 309 PLHLLLFEYFKGSLVATSANLSGESIIK-DEFNLCKKLDKVFDFYLD 354 >gi|204928283|ref|ZP_03219483.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204322605|gb|EDZ07802.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 746 Score = 60.5 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 20/144 (13%) Query: 20 DAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 +AG IA V GL D+RN A+ L K RPA PL + + Sbjct: 211 NAGGIIA-----VKGLGGFHLACDARNDNAVAMLRARKHRPA-KPLAVMLPTAQTL---- 260 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGH 133 P + + L P +++D + L +P + L++ + Sbjct: 261 ---PSAAR-SLLTTPAAPIVLVDKQYVPALGEGIAPGLTEVGVMLPANPLQHLLLQALNY 316 Query: 134 PLAIPSANRSGQISITNVKHILSS 157 PL + S N SG+ + L Sbjct: 317 PLVMTSGNLSGKPPAITNEQALDD 340 >gi|303231079|ref|ZP_07317819.1| carbamoyltransferase HypF [Veillonella atypica ACS-049-V-Sch6] gi|302514210|gb|EFL56212.1| carbamoyltransferase HypF [Veillonella atypica ACS-049-V-Sch6] Length = 765 Score = 60.5 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 65/201 (32%), Gaps = 15/201 (7%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 + E + G IA+ G+ D+ N A++ L E K R P Sbjct: 211 DDCFETVREMISNGAIIALK-----GIGGYHLVCDATNDKAVQILRERKHR-KDKPFAIM 264 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS-TTDIHPLSTANLKTACFRVPCG 122 I +V+ A V L P+ L+ + I L N +P Sbjct: 265 AGSIDIVEDFAVVSDGDLDALSA-MARPIVLLEKNDNFHASISELVAPNNHLIGVMLPYA 323 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIV 181 ++ + + S N SG I + + S + + ++ +IV Sbjct: 324 PIHHVLVPHDAKWVMTSGNASGDSVIYDDEKAFSE-LQTIADYFLTHNRQIYAPVDDSIV 382 Query: 182 NVQCEKKVRILRPGGLEIETL 202 +V + + I R G E + Sbjct: 383 SVVEDTPILIRRSRGYIPEPI 403 >gi|315058036|gb|ADT72365.1| [NiFe] hydrogenase metallocenter assembly protein HypF [Campylobacter jejuni subsp. jejuni S3] Length = 729 Score = 60.5 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 58/167 (34%), Gaps = 18/167 (10%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 D A ++ +FL G +AI G+ D+ N A++ L K RP P Sbjct: 200 DQEAFIQSAKFLKEGKILAIK-----GMGGFHLMCDAFNEEALKTLRLRKNRP-KKPFAL 253 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 D+ K+ A +D L P+ ++ + + I P + Sbjct: 254 MCKDLQSAKELAFIDEKEEALLGGVL-APIVILKAKKAFSLIAPDV----DKIGIMLAYT 308 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 L E + L SAN SG+ I + L + K +D Sbjct: 309 PLHLLLFEYFKGNLVATSANLSGESIIK-DEFNLRQKLDKVFDFYLD 354 >gi|57238183|ref|YP_178736.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter jejuni RM1221] gi|57166987|gb|AAW35766.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter jejuni RM1221] Length = 729 Score = 60.5 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 58/167 (34%), Gaps = 18/167 (10%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 D A ++ +FL G +AI G+ D+ N A++ L K RP P Sbjct: 200 DQEAFIQSAKFLKEGKILAIK-----GMGGFHLMCDAFNEEALKTLRLRKNRP-KKPFAL 253 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 D+ K+ A +D L P+ ++ + + I P + Sbjct: 254 MCKDLQSAKELAFIDEKEEALLGGVL-APIVILKAKKAFSLIAPDV----DKIGIMLAYT 308 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 L E + L SAN SG+ I + L + K +D Sbjct: 309 PLHLLLFEYFKGNLVATSANLSGESIIK-DEFNLRQKLDKVFDFYLD 354 >gi|300714968|ref|YP_003739771.1| conserved uncharacterized protein [Erwinia billingiae Eb661] gi|299060804|emb|CAX57911.1| conserved uncharacterized protein [Erwinia billingiae Eb661] Length = 259 Score = 60.1 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 37/170 (21%), Positives = 65/170 (38%), Gaps = 18/170 (10%) Query: 14 KACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 +A + L A G I PT+ Y + + + R ++ K+R P + + +K+ Sbjct: 15 EAVKVLSADGGMIVCPTKVGYIIMTS--DAKGLERKFDAKQRNRNKPGVVLCGSLEQLKE 72 Query: 73 HASVDPLSLHLAKLFWPGP--LTLVLDLL-------STTDIHPLSTANLKTACFRVP--- 120 A ++P L + W L +L L +T+CF + Sbjct: 73 LAQLNPEIESLYQQHWDQDVLLGCILPWKEDAVARIPEDGSKDLMMDRRQTSCFVIKFGT 132 Query: 121 --CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 K+L E +G SAN SG+ + V+ + I + LII+ Sbjct: 133 PGENLAKELWENHGKFSFASSANPSGKGNRGLVEG-IGERIESQADLIIE 181 >gi|167844512|ref|ZP_02470020.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei B7210] Length = 77 Score = 60.1 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 23/61 (37%) Query: 257 IKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLE 316 +A ++ A L+ ++ D + + I +P+ A+N+RL Sbjct: 8 AGAWAHAAGVHFVAAPEDPAAYARELYGLLRALDRAQVARILVEKLPDTAEWTAVNDRLG 67 Query: 317 R 317 R Sbjct: 68 R 68 >gi|86149942|ref|ZP_01068171.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter jejuni subsp. jejuni CF93-6] gi|85839760|gb|EAQ57020.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter jejuni subsp. jejuni CF93-6] Length = 729 Score = 60.1 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 58/167 (34%), Gaps = 18/167 (10%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 D A ++ +FL G +AI G+ D+ N A++ L K RP P Sbjct: 200 DQEAFMQSAKFLKEGKILAIK-----GMGGFHLMCDAFNEEALKTLRLRKNRP-KKPFAL 253 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 D+ K+ A +D L P+ ++ + + I P + Sbjct: 254 MCKDLQSAKELAFIDEKEEALLGGVL-APIVILKAKKAFSLIAPDV----DKIGIMLAYT 308 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 L E + L SAN SG+ I + L + K +D Sbjct: 309 PLHLLLFEYFKGNLVATSANLSGESIIK-DEFNLRQKLDKVFDFYLD 354 >gi|297197962|ref|ZP_06915359.1| hypothetical protein gi|197715038|gb|EDY59072.1| [NiFe] hydrogenase maturation protein HypF [Streptomyces sviceus ATCC 29083] Length = 794 Score = 60.1 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 70/235 (29%), Gaps = 28/235 (11%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPA 56 +I + ++ + +A L G +A V Y LA D+ N A+ L K R Sbjct: 209 RIGDVEGADPVTEARALLKRGAILA-----VKGLGGYHLACDASNQEAVALLRRRKARG- 262 Query: 57 MNPLICHVSDISMVKKHASVDPLSLHLAK-LFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115 P V+ + P L + P ++L P + Sbjct: 263 DKPFAVMARTADDVRHLVRLSPAERSLLEGRARP---VVLLRRRPHPSYAPGDLRPAEAV 319 Query: 116 CFRVPC--------GFTKKLIETYGHP-----LAIPSANRSGQISITNVKHILSSSICKE 162 R P L+ G P L + S N SG+ +T+ L Sbjct: 320 APRSPDLGVMLPYTPVHHLLLGLPGDPDGPRLLVMTSGNLSGEPIVTDDNEALERLAHLA 379 Query: 163 IPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDET 217 + + + ++V V + + I R G + + V V Sbjct: 380 DAWLTHDRPIHVPCDDSVVRVCDGEPLVIRRSRGYAPLPVSLPLPVRPALAVGGD 434 >gi|283954097|ref|ZP_06371622.1| transcriptional regulatory protein hypF [Campylobacter jejuni subsp. jejuni 414] gi|283794376|gb|EFC33120.1| transcriptional regulatory protein hypF [Campylobacter jejuni subsp. jejuni 414] Length = 716 Score = 60.1 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 35/194 (18%), Positives = 67/194 (34%), Gaps = 27/194 (13%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 D A ++ + L G +AI G+ D+ N +++ L K RP P Sbjct: 188 DQEAFIQSAKLLKEGKILAIK-----GMGGFHLMCDAFNEESLKALRLRKNRP-KKPFAL 241 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 + K+ A +D + G L ++ L + + L ++ + Sbjct: 242 MCKGLQNAKELAFIDEKE----EALLSGVLAPIVILKAKKALS-LIAPDIDKIGIMLAYT 296 Query: 123 FTKKLI-ETYGHPLAIPSANRSGQISITNVKHI-LSSSICKEIPLIIDGGISKIGLESTI 180 LI E + L SAN SG+ I + + L + +D I Sbjct: 297 PLHLLIFEYFKGSLVATSANLSGESIIKD--EVNLCQKLDGVFDFYLDYDRE-------I 347 Query: 181 VNVQCEKKVRILRP 194 +N + ++++ Sbjct: 348 INASDDSIAQVIKG 361 >gi|284035596|ref|YP_003385526.1| hypothetical protein Slin_0664 [Spirosoma linguale DSM 74] gi|283814889|gb|ADB36727.1| hypothetical protein Slin_0664 [Spirosoma linguale DSM 74] Length = 185 Score = 60.1 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 58/162 (35%), Gaps = 13/162 (8%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR-PAMNPLICHVSDI 67 + ++R L G IAI ET + + D N TA+ L +K PA + + Sbjct: 2 TTSIRDIAYQLRQGKLIAIADETGWSIVADPVNETAVEELLTLKPLMPAGLQPTVIIQNA 61 Query: 68 SMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS----TANLKTAC----FR 118 + + A V ++ L F PLT+V D S T N ++ R Sbjct: 62 DQLGLYVAKVPDVAYDLVD-FAENPLTVVYDQGKNIAGALWSSSDTTKNGQSVGEVAVRR 120 Query: 119 VPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSIC 160 ++LI ++G L S + + ++ Sbjct: 121 ALNTDLQRLIGSFGRGLL--SIPLESLVLPAAAETLIVERFG 160 >gi|167901499|ref|ZP_02488704.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei NCTC 13177] gi|167917767|ref|ZP_02504858.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei BCC215] Length = 82 Score = 60.1 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 23/61 (37%) Query: 257 IKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLE 316 +A ++ A L+ ++ D + + I +P+ A+N+RL Sbjct: 13 AGAWAHAAGVHFVAAPEDPAAYARELYGLLRALDRAQVARILVEKLPDTAEWTAVNDRLG 72 Query: 317 R 317 R Sbjct: 73 R 73 >gi|220915623|ref|YP_002490927.1| (NiFe) hydrogenase maturation protein HypF [Anaeromyxobacter dehalogenans 2CP-1] gi|219953477|gb|ACL63861.1| (NiFe) hydrogenase maturation protein HypF [Anaeromyxobacter dehalogenans 2CP-1] Length = 773 Score = 60.1 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 42/196 (21%), Positives = 68/196 (34%), Gaps = 18/196 (9%) Query: 9 SNALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 ++ +R + L AG A V Y LA D+ P A+R L E K+R PL Sbjct: 213 ADPIRDCADLLRAGGIAA-----VKGLGGYHLACDASAPAAVRTLRERKRR-EEKPLAVM 266 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CG 122 V+D+ + A V P L P ++ + + Sbjct: 267 VADLDAARALAEVSPAEAALLTS--PERPIVLCRRRPDAALAAEIAPGSPIVGLMLAYAP 324 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII--DGGISKIGLESTI 180 L+ G PL + SAN S + L + + L + D I+ +S + Sbjct: 325 LHHLLLADAGVPLVMTSANLSDEPIAFEDGEAL-ARLAGIADLFLVHDRAIASRCDDS-V 382 Query: 181 VNVQCEKKVRILRPGG 196 V + + + R G Sbjct: 383 ARVVAGRPMVMRRSRG 398 >gi|262043964|ref|ZP_06017048.1| hydrogenase maturation protein HypF [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259038690|gb|EEW39877.1| hydrogenase maturation protein HypF [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 744 Score = 60.1 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 53/155 (34%), Gaps = 20/155 (12%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 AL+ A L AG +AI G+ D+ NP A+ L K RPA PL Sbjct: 195 EAALQAAIARLAAGDIVAIK-----GIGGFHLACDAGNPAAVATLRARKHRPA-KPLAVM 248 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 + + + + L P +++ + + L +P Sbjct: 249 LPTATGL------PAAAAALMGS--PAAPIVLIAKAQVSGLCDEIAPGLAEVGVMLPSNP 300 Query: 124 TKKLIET-YGHPLAIPSANRSGQISITNVKHILSS 157 + L+ P+ + S N SG+ + L+ Sbjct: 301 LQHLLLQGLARPIVMTSGNLSGRPPALSNAQALNE 335 >gi|86151536|ref|ZP_01069750.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter jejuni subsp. jejuni 260.94] gi|85841165|gb|EAQ58413.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter jejuni subsp. jejuni 260.94] Length = 729 Score = 60.1 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 58/167 (34%), Gaps = 18/167 (10%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 D A ++ +FL G +AI G+ D+ N A++ L K RP P Sbjct: 200 DQEAFIQSAKFLKEGKILAIK-----GMGGFHLMCDAFNEEALKTLRLRKNRP-KKPFAL 253 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 D+ K+ A +D L P+ ++ + + I P + Sbjct: 254 MCKDLQSAKELAFIDEKEEALLGGVL-APIVILKAKKAFSLIAPDV----DKIGIMLAYT 308 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 L E + L SAN +G+ I + L + K +D Sbjct: 309 PLHLLLFEYFKGSLVATSANLNGESIIK-DEFNLRQKLDKVFDFYLD 354 >gi|332139750|ref|YP_004425488.1| Hydrogenase maturation protein HypF [Alteromonas macleodii str. 'Deep ecotype'] gi|327549772|gb|AEA96490.1| Hydrogenase maturation protein HypF [Alteromonas macleodii str. 'Deep ecotype'] Length = 768 Score = 60.1 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 33/142 (23%), Positives = 56/142 (39%), Gaps = 13/142 (9%) Query: 18 FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS-------DISMV 70 +L+ G +A+ + Y L D+++ A+ L + K RP P + + Sbjct: 225 YLNQGKIVALKSIGGYHLLCDAQSTEAVDLLRQRKNRP-DKPFAVMLPEPRADETSEDWL 283 Query: 71 KKHASVDPLSLHLAKLFWP-GPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI- 128 K +VD S A L P P+ L+ S I L+ +PC LI Sbjct: 284 DKCVAVD--SHQRALLLSPVRPI-LLAKKQSNVPIADNVAPMLRDLGVMLPCSGLHLLIM 340 Query: 129 ETYGHPLAIPSANRSGQISITN 150 + + P+ S N G+ +T+ Sbjct: 341 QQFNRPMVATSGNIYGEPMVTS 362 >gi|300723975|ref|YP_003713289.1| hypothetical protein XNC1_3117 [Xenorhabdus nematophila ATCC 19061] gi|297630506|emb|CBJ91171.1| conserved hypothetical protein [Xenorhabdus nematophila ATCC 19061] Length = 259 Score = 59.7 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 61/169 (36%), Gaps = 18/169 (10%) Query: 14 KACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 +A E L + G I PT+ Y + + + R +E K+R P + + +K+ Sbjct: 15 EAVEILSNDGGMIVCPTKVGYIIMTS--DARGLERKFEAKQRNRNKPGVVLCGSLEQLKE 72 Query: 73 HASVDPLSLHLAKLFWPGP--LTLVLDLL-------STTDIHPLSTANLKTACFRV---- 119 A ++ + W L +L L + T+CF + Sbjct: 73 LAQLNSEIEAFYQKTWDENVLLGCILPWKEEALARIPDDGSKELMMDHRGTSCFVIKFGK 132 Query: 120 PCGFTKKLI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 P K + E +G SAN SG+ + V + I + LII Sbjct: 133 PGEILAKELWEKHGKFSFASSANPSGKGNRGLV-ECIGERIESQADLII 180 >gi|39934050|ref|NP_946326.1| hydrogenase maturation protein HypF [Rhodopseudomonas palustris CGA009] gi|39647898|emb|CAE26418.1| hydrogenase maturation protein hypF [Rhodopseudomonas palustris CGA009] Length = 757 Score = 59.7 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 42/214 (19%), Positives = 67/214 (31%), Gaps = 33/214 (15%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + L G +A+ + Y L D+ + A+ L K R A P V+ + + Sbjct: 197 IEEIVACLRDGRIVALKSLGGYHLLCDATSEAAVAELRRRKGRDA-KPFAVMVASEASLD 255 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI--E 129 + L P+ L+ D + P L +P LI Sbjct: 256 RIVIATEAERALVSSV-ERPIVLMRDR---GVLAPSVAPALDAVGVMLPYTPLHHLIFHA 311 Query: 130 TYGHP-------------LAIPSANRSGQISITNVKH-------ILSSSICKEIPLIIDG 169 G P L SAN G +T L S ++I + D Sbjct: 312 AMGAPAGRAWQRAPLDLVLVATSANLGGDPIVTEDAQRRLASVADLIVSHDRDIVVRADD 371 Query: 170 GISKI--GLESTIVNVQCEKKVRILRPGGLEIET 201 ++++ G S I + RP L ET Sbjct: 372 SVARVIDGAPSFIRRARGVTP----RPITLPRET 401 >gi|126659487|ref|ZP_01730620.1| transcriptional regulatory protein; HypF [Cyanothece sp. CCY0110] gi|126619221|gb|EAZ89957.1| transcriptional regulatory protein; HypF [Cyanothece sp. CCY0110] Length = 764 Score = 59.7 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 37/200 (18%), Positives = 70/200 (35%), Gaps = 16/200 (8%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMN 58 + D+NAL + + L G +A+ GL + RN A+ L K RP Sbjct: 197 ILANDNNALNLSIDALKEGKILALK-----GLGGFQLIVNGRNTEAVTELRRRKHRP-HK 250 Query: 59 PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 P + +K ++ L +L P ++L + + P N Sbjct: 251 PFALMYASFKGIKIDCEINNLEENLLTS--PQAPIVLLKRKNNQSLSPDVAPNNPYLGVM 308 Query: 119 VPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-L 176 +P L+ P+ S N + + + + L + L + I + Sbjct: 309 LPSTPLHHLLLHKLNFPIVATSGNIASEPICIDEQEAL-QRLENIADLFLVHNRPIIRPV 367 Query: 177 ESTIVNVQCEKKVRILRPGG 196 + ++V V +++ I R G Sbjct: 368 DDSVVRVIAGREMMIRRARG 387 >gi|238896168|ref|YP_002920904.1| hydrogenase maturation protein [Klebsiella pneumoniae NTUH-K2044] gi|238548486|dbj|BAH64837.1| hydrogenase maturation protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 744 Score = 59.7 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 53/155 (34%), Gaps = 20/155 (12%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 AL+ A L AG +AI G+ D+ NP A+ L K RPA PL Sbjct: 195 EAALQAAIARLAAGDIVAIK-----GIGGFHLACDAGNPAAVATLRARKHRPA-KPLAVM 248 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 + + + + L P +++ + + L +P Sbjct: 249 LPTATGL------PAAAAALMGS--PAAPIVLIAKAQVSGLCDEIAPGLAEVGVMLPSNP 300 Query: 124 TKKLIET-YGHPLAIPSANRSGQISITNVKHILSS 157 + L+ P+ + S N SG+ + L+ Sbjct: 301 LQHLLLQGLARPIVMTSGNLSGRPPALSNAQALNE 335 >gi|152971570|ref|YP_001336679.1| hydrogenase maturation protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150956419|gb|ABR78449.1| hydrogenase maturation protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 744 Score = 59.7 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 53/155 (34%), Gaps = 20/155 (12%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 AL+ A L AG +AI G+ D+ NP A+ L K RPA PL Sbjct: 195 EAALQAAIARLAAGDIVAIK-----GIGGFHLACDAGNPAAVATLRARKHRPA-KPLAVM 248 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 + + + + L P +++ + + L +P Sbjct: 249 LPTATGL------PAAAAALMGS--PAAPIVLIAKAQVSGLCDEIAPGLAEVGVMLPSNP 300 Query: 124 TKKLIET-YGHPLAIPSANRSGQISITNVKHILSS 157 + L+ P+ + S N SG+ + L+ Sbjct: 301 LQHLLLQGLARPIVMTSGNLSGRPPALSNAQALNE 335 >gi|330723664|gb|AEC46034.1| SUA5-like translation suppressor [Mycoplasma hyorhinis MCLD] Length = 243 Score = 59.7 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 67/164 (40%), Gaps = 23/164 (14%) Query: 29 TETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAK--L 86 T+T+ GL +NP ++++Y +KKRP + +I + I + S + + + Sbjct: 101 TDTLVGLGTFLKNPN-LKQIYLLKKRPLIKKIIILIGKIEQLNSFISKENYQKYQKEFQQ 159 Query: 87 FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQI 146 WPG TL+++ FR+P + + P + SAN S + Sbjct: 160 HWPGSTTLIIEKQ----------------GFRIPNNLAIQELLIKEGPAFVTSANISNEK 203 Query: 147 SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 ++T + C + G G+ S I+++ K +R Sbjct: 204 NLTL-EQARKKFFCIFNVYNLTIGN---GIASKIIDLDNNKVLR 243 >gi|238755280|ref|ZP_04616624.1| Conserved uncharacterized protein [Yersinia ruckeri ATCC 29473] gi|238706514|gb|EEP98887.1| Conserved uncharacterized protein [Yersinia ruckeri ATCC 29473] Length = 259 Score = 59.7 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 37/170 (21%), Positives = 63/170 (37%), Gaps = 20/170 (11%) Query: 14 KACEFL-DAGLPIAIPTETVYGLAVDSRNPTA-IRRLYEIKKRPAMNPLICHVSDISMVK 71 +A E L + G I PT+ Y + + A + R +E K+R P + + +K Sbjct: 15 EAIEILSNNGGMIVCPTKVGYII---MTSDKAGLERKFEAKQRNRNKPGVVLCGSLEQLK 71 Query: 72 KHASVDPLSLHLAKLFWPGP--LTLVLDLL-------STTDIHPLSTANLKTACFRV--- 119 + A ++ L + W L +L L +T+CF + Sbjct: 72 ELAQLNAEIEQLYQQHWDADVLLGCILPWKEDALARIPDDGSKELMMDGRQTSCFVIKFG 131 Query: 120 -PCGFTKKLI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 P K + E + SAN SG+ + V+ + I + LII Sbjct: 132 KPGEILAKELWENHAKFSFASSANPSGKGNRGLVEG-IGDRIEERADLII 180 >gi|146301649|ref|YP_001196240.1| (NiFe) hydrogenase maturation protein HypF [Flavobacterium johnsoniae UW101] gi|146156067|gb|ABQ06921.1| (NiFe) hydrogenase maturation protein HypF [Flavobacterium johnsoniae UW101] Length = 756 Score = 59.7 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 58/166 (34%), Gaps = 4/166 (2%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 ++S T+ E L+ G IA+ + Y L D N ++ L K+R A P Sbjct: 197 LISGTNKEIFESISEKLNQGQIIAVKNTSGYLLLCDGSNNQTVQELRNRKRRSA-KPFAV 255 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 SD +KKH D L K P+ ++ N+KT +P Sbjct: 256 LFSDFKQIKKHLLHDKTEKKLLKS-TQAPIVILPIKNQKKLAVNEIAPNMKTIGAMLPNS 314 Query: 123 FTKKLIE-TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 LI + PL S N +G N + S+ + Sbjct: 315 GILHLISNLFQKPLVATSGNFNGSPLFFNQNEAV-QSLNSIADYYL 359 >gi|304373421|ref|YP_003856630.1| SUA5-like translation suppressor [Mycoplasma hyorhinis HUB-1] gi|304309612|gb|ADM22092.1| SUA5-like translation suppressor [Mycoplasma hyorhinis HUB-1] Length = 243 Score = 59.7 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 67/164 (40%), Gaps = 23/164 (14%) Query: 29 TETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAK--L 86 T+T+ GL +NP ++++Y +KKRP + +I + I + S + + + Sbjct: 101 TDTLVGLGTFLKNPN-LKQIYLLKKRPLIKKIIILIGKIEQLNSFISKENYQKYQKEFQQ 159 Query: 87 FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQI 146 WPG TL+++ FR+P + + P + SAN S + Sbjct: 160 HWPGSTTLIIEKQ----------------GFRIPNNLAIQELLIKEGPAFVTSANISNEK 203 Query: 147 SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 ++T + C + G G+ S I+++ K +R Sbjct: 204 NLTL-EQARKKFFCIFNVYNLTIGN---GIASKIIDLDNNKILR 243 >gi|240102313|ref|YP_002958621.1| [NiFe] hydrogenase maturation protein (hypF) [Thermococcus gammatolerans EJ3] gi|239909866|gb|ACS32757.1| [NiFe] hydrogenase maturation protein (hypF) [Thermococcus gammatolerans EJ3] Length = 772 Score = 59.7 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 34/203 (16%), Positives = 65/203 (32%), Gaps = 19/203 (9%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKK--RPAMNPLIC 62 + LRKA E +D G +AI G+ D+ N + L K+ RP P Sbjct: 201 DPLRKAAELIDRGYIVAIK-----GIGGIHLACDATNEEVVAELR--KRTFRPQ-KPFAI 252 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 + V+ A V + P+ + L + L T +P Sbjct: 253 MADSLETVRSFAYVSREEEEELTSYR-RPI-ITLRKREPFPLPENLAPGLHTIGVMLPYA 310 Query: 123 FTKKLIETY--GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 T ++ + + SAN G + + + L++ + ++ Sbjct: 311 GTHYILFHWSKTKVYVMTSANYPGMPMVKDNERAFEELRDMADYLLLHNRKILNRADDSV 370 Query: 181 VNVQCEKKVRILRPGGLEIETLK 203 + ++ I R G ++ Sbjct: 371 IRFVDGRRAVIRRSRGFVPLPIE 393 >gi|325290235|ref|YP_004266416.1| (NiFe) hydrogenase maturation protein HypF [Syntrophobotulus glycolicus DSM 8271] gi|324965636|gb|ADY56415.1| (NiFe) hydrogenase maturation protein HypF [Syntrophobotulus glycolicus DSM 8271] Length = 826 Score = 59.7 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 76/232 (32%), Gaps = 37/232 (15%) Query: 18 FLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 L+AG +A V GL D+ N +++L ++K+R + P D++ +K Sbjct: 209 LLEAGAILA-----VKGLGGFHLVCDAGNTETVKKLRQLKERGS-KPFALMARDLAAAQK 262 Query: 73 HASVDPLSLHLAKLFWP-GPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI-ET 130 + L L P P+ ++ L + + + T +P L+ + Sbjct: 263 AVRITKLEEELLSS--PAAPIVILSRLRAEKALAAEVAPGVHTLGIMLPYTPLHHLLFKG 320 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII-----DGGISKIGLESTIVNVQC 185 L + SAN SG I + L + + ++V V Sbjct: 321 AYDFLVMTSANLSGMPLIYENERAL-EELGAIADYFLIHNRDIFHPCDD----SVVQVVA 375 Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGML------KSHYA 231 + + R G + +VE+ M K HYA Sbjct: 376 GAPLFMRRARGYVPLPVLLEENVEIPAAALGGE------MKNAFCLAKGHYA 421 >gi|153950949|ref|YP_001398142.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter jejuni subsp. doylei 269.97] gi|152938395|gb|ABS43136.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter jejuni subsp. doylei 269.97] Length = 729 Score = 59.7 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 58/167 (34%), Gaps = 18/167 (10%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 D A ++ +FL G +AI G+ D+ + A++ L K RP P Sbjct: 200 DQEAFMQSAKFLKEGKILAIK-----GMGGFHLMCDAFDEKALKTLRLRKNRP-KKPFAL 253 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 D+ K+ A +D L P+ ++ + + I P + Sbjct: 254 MCKDLQSAKELAFIDEKEEALLGGVL-APIVILKAKKAFSLIAPDV----DKIGIMLAYT 308 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 L E + L SAN SG+ I + L + K +D Sbjct: 309 PLHLLLFEYFKGSLVATSANLSGESIIK-DEFNLRQKLDKVFDFYLD 354 >gi|257868604|ref|ZP_05648257.1| conserved hypothetical protein [Enterococcus gallinarum EG2] gi|257802768|gb|EEV31590.1| conserved hypothetical protein [Enterococcus gallinarum EG2] Length = 262 Score = 59.7 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 38/170 (22%), Positives = 62/170 (36%), Gaps = 17/170 (10%) Query: 13 RKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 A + L G I PT+ Y +AV + + R + K R P + S + ++ Sbjct: 18 EAAIQLLQQEGKVIVCPTKVGYIIAVS--DKKGLERKFSAKNRKRNKPGVVLCSSLEQLQ 75 Query: 72 KHASVDPLSLHLAKLFWPGPLTL--VLDLLSTTDI------HPLSTANLKTACFR----V 119 + A + + + W + +L + L +T+CF V Sbjct: 76 ELAEWNDEIAAVYQKCWDNDVLFGAILPWKESGKAYIPDGSQELMMDTRETSCFVIKFGV 135 Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 P K L E L SAN SG+ + V+ + I E LII+ Sbjct: 136 PGEQIAKALWEEKQQLLFASSANPSGKGNRGLVEG-IGEQIANEADLIIE 184 >gi|126732736|ref|ZP_01748531.1| hydrogenase maturation factor F [Sagittula stellata E-37] gi|126706732|gb|EBA05803.1| hydrogenase maturation factor F [Sagittula stellata E-37] Length = 732 Score = 59.7 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 31/149 (20%), Positives = 56/149 (37%), Gaps = 16/149 (10%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPL 60 + L +A L G +A V GL D+ N A+ L K+RP+ P Sbjct: 177 LEPEGGLAEAVTRLARGEVLA-----VKGLGGFYLACDAANVEAVALLRARKRRPS-KPF 230 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 + ++++ A VD + L + P ++L + + + + +P Sbjct: 231 ALMAP-LDVLRRFARVDDAAEALLRD--PAAPIVLLPKGAEA-LPESVAPGMAELGWMLP 286 Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISI 148 L+E +G L + S N SG+ Sbjct: 287 YTPLHHLLLEAFGGVLVMTSGNLSGEPQA 315 >gi|332701332|ref|ZP_08421420.1| Acylphosphatase [Desulfovibrio africanus str. Walvis Bay] gi|332551481|gb|EGJ48525.1| Acylphosphatase [Desulfovibrio africanus str. Walvis Bay] Length = 789 Score = 59.7 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 35/199 (17%), Positives = 66/199 (33%), Gaps = 21/199 (10%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 A+R+ E L GL AI GL D+ + A+ L E K R PL Sbjct: 209 DEAMRRLAEALAEGLVCAIK-----GLGGFHLACDATSAMAVAALRERKNR-RGKPLAVM 262 Query: 64 VSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-- 120 V ++ ++ A ++ L P ++L + + + + + +P Sbjct: 263 VPNLDTARRLAEINAEEERWLTGKERP---IVLLRRRPDSPLAADISPDTQFIGVMLPYT 319 Query: 121 --CGFTKKLIE-TYGHP-LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 ++ P L + S N S + + L ++ I Sbjct: 320 PLHHVLFHHLQGRVDLPALVMTSGNFSSEPISIGNREALRRLADIADLFLLHDRDILIRT 379 Query: 177 ESTIVNVQCEKKVRILRPG 195 + +++ V K + LR Sbjct: 380 DDSVLRVLPTGKPQFLRRA 398 >gi|15679291|ref|NP_276408.1| transcriptional regulator HypF-like protein [Methanothermobacter thermautotrophicus str. Delta H] gi|2622395|gb|AAB85769.1| transcriptional regulator HypF homolog [Methanothermobacter thermautotrophicus str. Delta H] Length = 729 Score = 59.7 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 75/228 (32%), Gaps = 29/228 (12%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAM 57 I+ D ++ A E LD G +A V G+ + + ++RL RP Sbjct: 159 ILKTHDP--IKMAAELLDDGSILA-----VKGIGGTHLVCRADDDEVVKRLRSGLGRP-N 210 Query: 58 NPLICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 P C D+ ++ +AS+ + L P +VL + P L Sbjct: 211 QPFACMSPDLESIESYASISDVEEEALTSRRRP---IVVLKKSRDYCLAPSVAPGLHNIG 267 Query: 117 FRVP-CGFTKKLIETYGHPL-AIPSANRSGQISITNVKHILSSSICKEIPLII--DGGIS 172 +P G L+ P + SANR G I+ + + D I Sbjct: 268 VMLPYSGLHHVLLRYTEAPAYVMTSANRPGDPMFIENTEIIG-GLQGIADYFLLHDRRIV 326 Query: 173 KIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTP 220 +S +V + + I R G E E+ + + S Sbjct: 327 NRCDDS-VVRFRGGEMAFIRRSRGYAPE------PYEIPHVAGDVSAI 367 >gi|307611332|emb|CBX00993.1| hydrogenase maturation protein HypF [Legionella pneumophila 130b] Length = 741 Score = 59.3 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 75/225 (33%), Gaps = 33/225 (14%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 ++ K + + G IA+ GL D+RN I +L K R A P V+ Sbjct: 189 SVDKVAQRIQEGEIIALK-----GLGGYQLICDARNEETISKLRLRKNREA-KPFALMVA 242 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125 ++ ++ A V + L P +VL + L +P Sbjct: 243 NVKSAEEIAEVSC-QVRLVLESRERP--IVLLRKKKAPLPDGIAPGLNHFGIMLPSTPLH 299 Query: 126 KLI--ETYGHP-------------LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 L+ G+P L + SAN G+ I + K + II Sbjct: 300 YLLFNSFLGNPDYCQWLDEYHSMVLVVTSANIGGEPLIIDDKKA-EQGLNSIADKIISHD 358 Query: 171 ISKIG-LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV 214 I + ++V + + V I R G L+ + E+ V Sbjct: 359 REIITRTDDSVVRMINDTSVLIRRARGYVPAPLR--LPYEIPPTV 401 >gi|82702792|ref|YP_412358.1| (NiFe) hydrogenase maturation protein HypF [Nitrosospira multiformis ATCC 25196] gi|82410857|gb|ABB74966.1| (NiFe) hydrogenase maturation protein HypF [Nitrosospira multiformis ATCC 25196] Length = 770 Score = 59.3 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 35/161 (21%), Positives = 56/161 (34%), Gaps = 19/161 (11%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59 I AL + L G +A V G+ D+RN TAI +L K RP P Sbjct: 207 RINGPAALTASVTALRRGEIVA-----VKGIGGYHLMCDARNETAIGQLRTNKHRP-HKP 260 Query: 60 LICH---VSD--ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT 114 L D ++ V+ +D L + P ++L + + T ++ Sbjct: 261 LALMFPWCGDDGLAQVRDELEIDAQGQALLRA--PARPIVLLRRRRDSMLPRSITPGIRE 318 Query: 115 ACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154 +P L+ P+ S N SG+ +T Sbjct: 319 IGVMLPYSPLHHLLLHELDKPVVATSGNVSGEPVLTANAEA 359 >gi|302876197|ref|YP_003844830.1| (NiFe) hydrogenase maturation protein HypF [Clostridium cellulovorans 743B] gi|307686928|ref|ZP_07629374.1| hydrogenase maturation protein HypF [Clostridium cellulovorans 743B] gi|302579054|gb|ADL53066.1| (NiFe) hydrogenase maturation protein HypF [Clostridium cellulovorans 743B] Length = 773 Score = 59.3 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 55/158 (34%), Gaps = 6/158 (3%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA ++ + +++L +KKR + P V+D M +K+ V L P + Sbjct: 227 LAANALDEKIVKKLRLLKKRDS-KPFAIMVNDTKMAEKYMEVSEEEKKLLNGV-ERP--I 282 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGH--PLAIPSANRSGQISITNVK 152 VL + N + +P L+ G L + S N SG+ + Sbjct: 283 VLLKKKPHMLPDAIAPNNPSYGVMLPSAPLHYLLLEDGRLEALIMTSGNISGEPIVYENN 342 Query: 153 HILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 + I++ ++ +IV +R Sbjct: 343 EAIKQLNSIADYFILNNRDIYTRVDDSIVRYSNSNSLR 380 >gi|302878791|ref|YP_003847355.1| (NiFe) hydrogenase maturation protein HypF [Gallionella capsiferriformans ES-2] gi|302581580|gb|ADL55591.1| (NiFe) hydrogenase maturation protein HypF [Gallionella capsiferriformans ES-2] Length = 772 Score = 59.3 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 60/177 (33%), Gaps = 27/177 (15%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59 + ++ L + L AG +A+ G+ + N A+ RL +K+R P Sbjct: 204 PVETADPLVQTASLLRAGQIVALK-----GVGGFHLVCMADNQAAVNRLRALKQRDE-KP 257 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 V + + + V L + P+ L+ + + P +L + Sbjct: 258 FAVMVLNTRSAQHYGVVSADEAFLLETG-ERPIVLLGKHPACDEDLPCVAPDLSHIGLLL 316 Query: 120 PCGFTKKLI--ETYGHP-------------LAIPSANRSGQISITNVKHILSSSICK 161 P L+ E GHP L + SAN G+ + N +S + Sbjct: 317 PYTPLHYLLFHELLGHPDGINWLQQATKIALVMTSANAGGEPLVINDDEARASRLAD 373 >gi|312865184|ref|ZP_07725412.1| conserved hypothetical protein [Streptococcus downei F0415] gi|311099295|gb|EFQ57511.1| conserved hypothetical protein [Streptococcus downei F0415] Length = 261 Score = 59.3 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 42/215 (19%), Positives = 78/215 (36%), Gaps = 29/215 (13%) Query: 8 DSNALRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTA-IRRLYEIKKRPAMNPLICHVS 65 D N ++ E + G I PT+ Y + + A + R + K R P + Sbjct: 8 DGNLSQEGLEIVKGEGGCIVCPTKVGYII---MTSDKAGLERKFAAKNRKRNKPGVVLCG 64 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTL--VLDLLS---------TTDIHPLSTANLKT 114 + ++ A + P + W + L +L L T + KT Sbjct: 65 SMDELRALAQLTPEIESFYQKHWDQDILLGCILPWKEEAYAKLQAFGDGREELMTDSRKT 124 Query: 115 ACFRVPCGFTKKLI-----ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169 +CF + G + I E G + SAN SG+ + V+ + I + + L+I+ Sbjct: 125 SCFVIKFGVAGEQIAKEMWEKEGKMVYASSANPSGKGNRGKVEG-IGERIEEAVDLVIEA 183 Query: 170 GISKIGLESTIVNVQCEKKVRILRPGGLEIETLKR 204 + S +Q +K V G+ + + + Sbjct: 184 DDY---VAS----IQPDKNVETRYEQGVMVSMVDK 211 >gi|296104312|ref|YP_003614458.1| hypothetical protein ECL_03975 [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058771|gb|ADF63509.1| hypothetical protein ECL_03975 [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 259 Score = 59.3 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 39/170 (22%), Positives = 60/170 (35%), Gaps = 18/170 (10%) Query: 14 KACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 +A L A G I PT+ Y + + + R +E K+R P + + +K Sbjct: 15 EAINVLSAEGGMIVCPTKVGYIIMTS--DKEGLERKFEAKQRNRNKPGVVLCGSMEQLKS 72 Query: 73 HASVDPLSLHLAKLFWPGP--LTLVLDL-------LSTTDIHPLSTANLKTACFRVPCG- 122 A ++P + W L +L L + L KT+CF + G Sbjct: 73 LAEMNPEIEAFYQAHWDADVLLGCILPWREDAIARLPDNGLKELMMDGRKTSCFVIKFGK 132 Query: 123 ----FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 K L E + SAN SG+ + V + I LII Sbjct: 133 PGEMIAKDLWENHQKFSFASSANPSGKGNRGMV-EFIGERIESRADLIIC 181 >gi|83630700|gb|ABC26865.1| HypF [Bradyrhizobium sp. UPM1167] Length = 751 Score = 59.3 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 59/175 (33%), Gaps = 27/175 (15%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 S+ + + G +AI GL D+RN A++RL K R P Sbjct: 191 SHGINAIVAAIADGQIVAIK-----GLGGYQLLCDARNQDAVQRLRSRKHR-LQKPFAVM 244 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP--- 120 V +V + A + L L + P+ L L S ++ P L +P Sbjct: 245 VGSTELVNEIAEANGAELALLESVA-RPVVL---LPSRNNLAPAIAPGLSRVGVMLPVVA 300 Query: 121 -CGFTKKLIETYG------HP-LAIPSANRSGQISITNVKHILSSSICKEIPLII 167 + + G P + SAN G+ + + L + L++ Sbjct: 301 LHHLIFHALRSTGAWLEGACPVMVATSANSCGEPLLIDNAQAL-WRLEGIADLVV 354 >gi|126460170|ref|YP_001056448.1| (NiFe) hydrogenase maturation protein HypF [Pyrobaculum calidifontis JCM 11548] gi|126249891|gb|ABO08982.1| (NiFe) hydrogenase maturation protein HypF [Pyrobaculum calidifontis JCM 11548] Length = 745 Score = 59.3 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 26/154 (16%), Positives = 57/154 (37%), Gaps = 6/154 (3%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM- 69 ++ + + + G +A+ + + LA + N + +L E K R P + Sbjct: 201 SIAEVAKLVKEGYIVAVKSTGGFHLAALADNDDVVLKLRERKMRKR-QPFAVM--SLEEV 257 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129 + K + +L + K P L+L + + + L +P + Sbjct: 258 LPKLVHLSDEALAILKS--PQRPILLLPKREGSPVSKWVSPGLSVEGVFLPYTAYHYELL 315 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEI 163 L + SANR G+ + T+ + ++ + I Sbjct: 316 QGAGFLIMTSANRHGRPTCTSEECVIEQKLADYI 349 >gi|118592880|ref|ZP_01550269.1| (NiFe) hydrogenase maturation protein HypF [Stappia aggregata IAM 12614] gi|118434650|gb|EAV41302.1| (NiFe) hydrogenase maturation protein HypF [Stappia aggregata IAM 12614] Length = 776 Score = 58.9 bits (142), Expect = 9e-07, Method: Composition-based stats. Identities = 53/304 (17%), Positives = 94/304 (30%), Gaps = 63/304 (20%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 L +A + AG +A V G+ D+RN A+ L KR + PL +D Sbjct: 208 LEEAARRIKAGQIVA-----VKGIGGFHLACDARNEKAVAELRLR-KRRRVKPLALMAAD 261 Query: 67 ISMVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFT 124 ++ ++ + V P L+ P +VL + + P F +P Sbjct: 262 LAGIRAYCRVSPEEQTALSSPAAP----IVLLRMDGKHLAPSLVPGQDQLGFMLPYTPLH 317 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIVNV 183 +L++ G PL S N S + T + + L + + L+ ++V V Sbjct: 318 HQLLKETGGPLVFTSGNLSDEPQAT-ANDDARTRLTGIADLWLMHDRDIVNRLDDSVVRV 376 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 + R G + + E +P V + Sbjct: 377 NTTGPQVLRRARGFAPAPI----------VLPEAFAEAAP------------VLAMGGEL 414 Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFN--------LFNYMKIADDSGAS 295 L++ G + G L+EAA + L+ + Sbjct: 415 KSAFCLLKDGQAILSQH-----------LGDLEEAATHAEYRKTLALY---RQLYRHEPK 460 Query: 296 SIAF 299 IA Sbjct: 461 VIAV 464 >gi|53728951|ref|ZP_00134400.2| COG0068: Hydrogenase maturation factor [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208794|ref|YP_001054019.1| carbamoyltransferase HypF [Actinobacillus pleuropneumoniae L20] gi|126097586|gb|ABN74414.1| carbamoyltransferase HypF [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 761 Score = 58.9 bits (142), Expect = 9e-07, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 58/154 (37%), Gaps = 17/154 (11%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 +A+ A + L G +A V GL D+ I L K RP+ P V Sbjct: 209 SAILAAADKLRQGYIVA-----VKGLGGFHLACDATQAKTIDLLRHRKVRPS-KPFAVMV 262 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 ++ + + A + L L + P+ ++L +H L +L +P Sbjct: 263 PNLDRLTELAEEERLLLQSSAA----PI-VLLAKHKVRGVHDLVAPDLAEIGVMLPSNPL 317 Query: 125 KKLIE-TYGHPLAIPSANRSGQISITNVKHILSS 157 + L+ PL + S NRSG + + L S Sbjct: 318 QHLLMHEVNMPLIMTSGNRSGLPPALDNRDALDS 351 >gi|331266246|ref|YP_004325876.1| hypothetical protein SOR_0875 [Streptococcus oralis Uo5] gi|326682918|emb|CBZ00535.1| conserved hypothetical protein [Streptococcus oralis Uo5] Length = 259 Score = 58.9 bits (142), Expect = 9e-07, Method: Composition-based stats. Identities = 41/224 (18%), Positives = 81/224 (36%), Gaps = 29/224 (12%) Query: 17 EFLD-AGLPIAIPTETVYGLAVDSRNPTA-IRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 + L G I PT+ Y + + A + R +E K+R P + + ++ A Sbjct: 17 DILKGEGGCIVCPTKVGYII---MTSDKAGLERKFEAKERNRNKPGVVLCGSMDELRALA 73 Query: 75 SVDPLSLHLAKLFWPGPLTL--VLDLLS---------TTDIHPLSTANLKTACFRVPCGF 123 ++P + W + L +L L T T+CF + G Sbjct: 74 QLNPEIEAFYQKHWDEDILLGCILPWKPEAFEKLKAYGDGREELMTDVRGTSCFVIKFGK 133 Query: 124 TKKLIET----YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + + G + SAN SG+ + V+ + I + L+I+ + S Sbjct: 134 AGEQLAAKLWEEGKMVYASSANPSGKGNRGKVEG-IGERIEGAVDLVIEADDY---VAS- 188 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSP 223 +Q +K + G+ + + + + E D + +P +P Sbjct: 189 ---IQPDKTIETRYEQGVMVSMVDKDGKLIPEQGGDRSISP-AP 228 >gi|192289577|ref|YP_001990182.1| (NiFe) hydrogenase maturation protein HypF [Rhodopseudomonas palustris TIE-1] gi|192283326|gb|ACE99706.1| (NiFe) hydrogenase maturation protein HypF [Rhodopseudomonas palustris TIE-1] Length = 757 Score = 58.9 bits (142), Expect = 9e-07, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 48/157 (30%), Gaps = 20/157 (12%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + L G +A+ + Y L D+ + A+ L K R A P V+ + + Sbjct: 197 IEEIVACLRDGRIVALKSLGGYHLLCDATSEAAVVELRRRKGRDA-KPFAVMVASEASLD 255 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI--E 129 + L P+ L+ D + + P L +P LI Sbjct: 256 RIVIATEAERALVSSV-ERPIVLMRDRGA---LAPSVAPALDAVGVMLPYTPLHHLIFHA 311 Query: 130 TYGHP-------------LAIPSANRSGQISITNVKH 153 G P L SAN G +T Sbjct: 312 AMGAPAGREWQRAPVDLALVATSANLGGDPIVTEDAQ 348 >gi|51244429|ref|YP_064313.1| hydrogenase accessory protein HypF [Desulfotalea psychrophila LSv54] gi|50875466|emb|CAG35306.1| probable hydrogenase accessory protein HypF [Desulfotalea psychrophila LSv54] Length = 782 Score = 58.9 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 70/201 (34%), Gaps = 18/201 (8%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59 I + L L A +AI GL ++ A+ +L E K+RP P Sbjct: 196 KIETKSPLTDTAVALAANKLVAIR-----GLGGFHLSCNALEEKAVAQLRERKRRP-HKP 249 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 L V I + KK+ + + L P+ ++L TD+ ++ + Sbjct: 250 LAIMVQSIDIAKKYCFISEQEIALLSSI-EHPI-VLLQKRPDTDLAQGLAPHITELGIML 307 Query: 120 PCGFTKKLI-ETYGHP--LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG- 175 L+ + P L + S N SG T + + + + + Sbjct: 308 AYTPLHHLLFQESTCPQALVMTSGNSSGTPICTGNAEAI-DRLGPIVDNFLLHNRDIVTR 366 Query: 176 LESTIVNVQCEKKVRILRPGG 196 ++ ++ V +K + + R G Sbjct: 367 IDDSVTRVSGKKPLILRRARG 387 >gi|260891193|ref|ZP_05902456.1| translation factor [Leptotrichia hofstadii F0254] gi|260859220|gb|EEX73720.1| translation factor [Leptotrichia hofstadii F0254] Length = 114 Score = 58.9 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 4/94 (4%) Query: 111 NLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169 N++T R+P ++I+ G L SAN SG+ ++T V LS + K +II Sbjct: 18 NMETIGIRIPKNETALEIIKKSGGVLLTTSANISGENAVTKV-EKLSEELIKNADIIISN 76 Query: 170 GISK-IGLESTIVNVQCEKKVRILRPGGLEIETL 202 K G STIV + + K+ +LR G + E + Sbjct: 77 EKVKLTGKPSTIVKYE-DGKLTLLREGNIAFEEI 109 >gi|332159109|ref|YP_004424388.1| hydrogenase expression/formation regulatory protein [Pyrococcus sp. NA2] gi|331034572|gb|AEC52384.1| hydrogenase expression/formation regulatory protein [Pyrococcus sp. NA2] Length = 773 Score = 58.9 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 38/205 (18%), Positives = 68/205 (33%), Gaps = 23/205 (11%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAI----RRLYEIKKRPAMNPL 60 + LRKA + +D G +AI G+ D+ N + +R++ RP P Sbjct: 202 DPLRKAAKLIDKGYIVAIK-----GIGGIHLACDATNDEIVKELRKRIF----RPQ-KPF 251 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 D+ VK A V + P+ + L + L T +P Sbjct: 252 AIMARDLETVKTFAYVSKEEEEELTSYR-RPI-VALRKKEPFPLPESLAPGLHTIGVMLP 309 Query: 121 CGFTKKLIETYG-HPL-AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 T ++ + P+ + SAN G I + L++ + Sbjct: 310 YAGTHYILFHWSETPVYVMTSANFPGMPMIKENEEAFEKLKDVADYLLLHNRRIPNRADD 369 Query: 179 TIVNVQCEKKVRILRPGGLEIETLK 203 ++V K+ I R G ++ Sbjct: 370 SVVRFVDGKRAVIRRSRGFVPLAIE 394 >gi|148643166|ref|YP_001273679.1| hydrogenase maturation factor, HypF [Methanobrevibacter smithii ATCC 35061] gi|148552183|gb|ABQ87311.1| hydrogenase maturation factor, HypF [Methanobrevibacter smithii ATCC 35061] Length = 750 Score = 58.9 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 35/166 (21%), Positives = 57/166 (34%), Gaps = 19/166 (11%) Query: 1 MQIMS----ITDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEI 51 M+I I +N ++ A + L G IAI G+ D+ N A++ L + Sbjct: 184 MKIYKGPEEINSNNPIKVAADKLKEGKIIAIK-----GIGGTHLVVDAYNDKAVKELRKR 238 Query: 52 KKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTAN 111 RP D+ VK +A + + P+ +VL + Sbjct: 239 LNRP-NQAFAVMSKDLDSVKGYAKLSKKEIATITSN-KRPI-VVLKKNDNYNFPESLAPG 295 Query: 112 LKTACFRVPCGFTKKLIETYG--HPLAIPSANRSGQISITNVKHIL 155 L +P L+ G + SAN G+ + K IL Sbjct: 296 LHNIGVMLPYSPMHYLLFDEGDIDTYVMTSANTPGEPMMITNKEIL 341 >gi|121535845|ref|ZP_01667644.1| (NiFe) hydrogenase maturation protein HypF [Thermosinus carboxydivorans Nor1] gi|121305560|gb|EAX46503.1| (NiFe) hydrogenase maturation protein HypF [Thermosinus carboxydivorans Nor1] Length = 750 Score = 58.9 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 25/163 (15%), Positives = 48/163 (29%), Gaps = 14/163 (8%) Query: 10 NALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 + + G +A V Y LA D++N A++ L E K R P Sbjct: 199 DVFDAVRALVADGHIVA-----VKGIGGYHLACDAKNVAAVKALRERKIR-EDKPFAVMC 252 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 ++ V++ + P L P+ ++L D+ +P Sbjct: 253 GSLAAVRRRCQLSPAEEELLTGI-VRPI-VLLAKSEGYDLADSVAPGNPYLGVMLPYAPV 310 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 L+ + S N S + + + + Sbjct: 311 HWLLLGEDDVWVMTSGNTSDEPIAYDDADA-RERLAGIADYFL 352 >gi|227541074|ref|ZP_03971123.1| [NiFe] hydrogenase maturation protein HypF [Corynebacterium glucuronolyticum ATCC 51866] gi|227183334|gb|EEI64306.1| [NiFe] hydrogenase maturation protein HypF [Corynebacterium glucuronolyticum ATCC 51866] Length = 760 Score = 58.9 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 45/147 (30%), Gaps = 30/147 (20%) Query: 13 RKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 K + D+G +A V G+ D+RN + +L + K+RP P V Sbjct: 239 EKVSKLFDSGAIVA-----VKGIGGFHLMCDARNEETVEKLRQRKQRP-DKPFAVMVPRT 292 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 S + A+ L + + P L P +L Sbjct: 293 SEPQTAAAPIELVNDFDE-----------------PLAPSVNPRLSRVGIFSPYSPLHEL 335 Query: 128 IETYGHPLAIPSANRSGQISITNVKHI 154 I PL S N S + IT Sbjct: 336 I--CDRPLVATSGNLSSEPLITTNDDA 360 >gi|227489480|ref|ZP_03919796.1| [NiFe] hydrogenase maturation protein HypF [Corynebacterium glucuronolyticum ATCC 51867] gi|227090658|gb|EEI25970.1| [NiFe] hydrogenase maturation protein HypF [Corynebacterium glucuronolyticum ATCC 51867] Length = 760 Score = 58.9 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 45/147 (30%), Gaps = 30/147 (20%) Query: 13 RKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 K + D+G +A V G+ D+RN + +L + K+RP P V Sbjct: 239 EKVSKLFDSGAIVA-----VKGIGGFHLMCDARNEETVEKLRQRKQRP-DKPFAVMVPRT 292 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 S + A+ L + + P L P +L Sbjct: 293 SEPQTAAAPIELVNDFDE-----------------PLAPSVNPRLSRVGIFSPYSPLHEL 335 Query: 128 IETYGHPLAIPSANRSGQISITNVKHI 154 I PL S N S + IT Sbjct: 336 I--CDRPLVATSGNLSSEPLITTNDDA 360 >gi|238784611|ref|ZP_04628617.1| Carbamoyltransferase hypF [Yersinia bercovieri ATCC 43970] gi|238714480|gb|EEQ06486.1| Carbamoyltransferase hypF [Yersinia bercovieri ATCC 43970] Length = 762 Score = 58.9 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 45/210 (21%), Positives = 75/210 (35%), Gaps = 23/210 (10%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICHV 64 +AL +A + L AG +AI GL D+ N A+ RL K+RP+ PL + Sbjct: 202 SALEQAAQALLAGEIVAIK-----GLGGFHLAVDATNAAAVARLRRRKQRPS-KPLAVML 255 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 + + L L P +++ + + L + Sbjct: 256 PSEEWLTRCVQSADNDALLRLLRSPAAPIVLVAKQPDSPLCAAVAPQLAEIGVMLAANPL 315 Query: 125 KK-LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + L++ PL + S N SG+ + + LS+ + I D + IV Sbjct: 316 QHLLLQQVARPLVMTSGNGSGKPPALSNEQALSA-----LSDIADHWLLHNRQ---IVQR 367 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYC 213 + VR G E L+RA + C Sbjct: 368 ADDSLVRFTAQGA---EMLRRARGYVPDSC 394 >gi|288869653|ref|ZP_05975457.2| [NiFe] hydrogenase maturation protein HypF [Methanobrevibacter smithii DSM 2374] gi|288860826|gb|EFC93124.1| [NiFe] hydrogenase maturation protein HypF [Methanobrevibacter smithii DSM 2374] Length = 750 Score = 58.9 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 35/166 (21%), Positives = 57/166 (34%), Gaps = 19/166 (11%) Query: 1 MQIMS----ITDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEI 51 M+I I +N ++ A + L G IAI G+ D+ N A++ L + Sbjct: 184 MKIYKGPEEINSNNPIKVAADKLKEGKIIAIK-----GIGGTHLVVDAYNDKAVKELRKR 238 Query: 52 KKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTAN 111 RP D+ VK +A + + P+ +VL + Sbjct: 239 LNRP-NQAFAVMSKDLDSVKGYAKLSKKEIATITSN-KRPI-VVLKKNDNYNFPESLAPG 295 Query: 112 LKTACFRVPCGFTKKLIETYG--HPLAIPSANRSGQISITNVKHIL 155 L +P L+ G + SAN G+ + K IL Sbjct: 296 LHNIGVMLPYSPMHYLLFDEGDIDTYVMTSANTPGEPMMITNKEIL 341 >gi|302670769|ref|YP_003830729.1| hydrogenase maturation protein HypF [Butyrivibrio proteoclasticus B316] gi|302395242|gb|ADL34147.1| hydrogenase maturation protein HypF [Butyrivibrio proteoclasticus B316] Length = 803 Score = 58.5 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 63/158 (39%), Gaps = 6/158 (3%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 ++++ A + L+ I + + Y L N A+ +L K R P SDI Sbjct: 244 DSVKNAIKLLENNEIIGLKGSSGYQLVCKPVNDAAL-KLRNAKGR-EKKPFAVMFSDIDS 301 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129 ++++ V+ L K P+ ++L+ + D + + +P +L+ Sbjct: 302 IEEYCFVNSKEKELLKSSA-RPI-VLLNTKESFD--YEVCKDSRYIGAFLPSVGIHRLLC 357 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 PL + SANRS + I + + ++ ++ Sbjct: 358 DAVGPLIVTSANRSDEPIIIDDDIFIKEFTNTQVQAVL 395 >gi|315928829|gb|EFV08094.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter jejuni subsp. jejuni 305] Length = 675 Score = 58.5 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 58/167 (34%), Gaps = 18/167 (10%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 D A ++ +FL G +AI G+ D+ N A++ L K RP P Sbjct: 200 DQEAFIQSAKFLKEGKILAIK-----GMGGFHLMCDAFNEEALKTLRLRKNRP-KKPFAL 253 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 D+ K+ A +D L P+ ++ + + I P + Sbjct: 254 MCKDLQSAKELAFIDEKEEALLGGVL-APIVILKAKKAFSLIAPDV----DKIGIMLAYT 308 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 L E + L SAN SG+ I + L + K +D Sbjct: 309 PLHLLLFEYFKGSLVATSANLSGESIIK-DEFNLCKKLDKVFDFYLD 354 >gi|315927358|gb|EFV06702.1| NiFe/hydrogenase maturation protein HypF [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 729 Score = 58.5 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 58/167 (34%), Gaps = 18/167 (10%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 D A ++ +FL G +AI G+ D+ N A++ L K RP P Sbjct: 200 DQEAFIQSAKFLKEGKILAIK-----GMGGFHLMCDAFNEEALKTLRLRKNRP-KKPFAL 253 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 D+ K+ A +D L P+ ++ + + I P + Sbjct: 254 MCKDLQSAKELAFIDEKEEALLGGVL-APIVILKAKKAFSLIAPDV----DKIGIMLAYT 308 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 L E + L SAN SG+ I + L + K +D Sbjct: 309 PLHLLLFEYFKGSLVATSANLSGESIIK-DEFNLCKKLDKVFDFYLD 354 >gi|57167650|ref|ZP_00366790.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter coli RM2228] gi|57020772|gb|EAL57436.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter coli RM2228] Length = 713 Score = 58.5 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 58/167 (34%), Gaps = 18/167 (10%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 D A ++ +FL G +AI G+ D+ N A++ L K RP P Sbjct: 184 DQEAFIQSAKFLKEGKILAIK-----GMGGFHLMCDAFNEEALKTLRLRKNRP-KKPFAL 237 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 D+ K+ A +D L P+ ++ + + I P + Sbjct: 238 MCKDLQSAKELAFIDEKEEALLGGVL-APIVILKAKKAFSLIAPDV----DKIGIMLAYT 292 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 L E + L SAN SG+ I + L + K +D Sbjct: 293 PLHLLLFEYFKGSLVATSANLSGESIIK-DEFNLCKKLDKVFDFYLD 338 >gi|301057539|ref|ZP_07198624.1| carbamoyltransferase HypF [delta proteobacterium NaphS2] gi|300448359|gb|EFK12039.1| carbamoyltransferase HypF [delta proteobacterium NaphS2] Length = 745 Score = 58.5 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 40/200 (20%), Positives = 69/200 (34%), Gaps = 18/200 (9%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNP 59 I + +R+ L G +AI GL D+ N A+ RL + K+R Sbjct: 196 RIPCDDPIRETVFLLGEGAILAIK-----GLGGFHLCVDACNHGAVIRLRQRKQR-EEKS 249 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 L V D+ M + S+DP+ L P+ ++L + + + + Sbjct: 250 LAVMVRDLKMARGLVSMDPIESGLLGS-RQKPI-VLLPKKPRLHLSEAVAPHNRYLGVML 307 Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--GL 176 P L+E + PL + S N S + + + + G Sbjct: 308 PYTPLHVLLMEGFAGPLVMTSGNVSEEPITHDNASAFR-KLHGIADYFLTHNRDIHLRGD 366 Query: 177 ESTIVNVQCEKKVRILRPGG 196 +S +V V +I R G Sbjct: 367 DS-VVRVVNGVPRQIRRSRG 385 >gi|296242361|ref|YP_003649848.1| (NiFe) hydrogenase maturation protein HypF [Thermosphaera aggregans DSM 11486] gi|296094945|gb|ADG90896.1| (NiFe) hydrogenase maturation protein HypF [Thermosphaera aggregans DSM 11486] Length = 763 Score = 58.5 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 37/204 (18%), Positives = 67/204 (32%), Gaps = 19/204 (9%) Query: 9 SNALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 N + +A + +D G IA V Y +A + + +L K RP P Sbjct: 201 DNPIVEAAKLIDEGSIIA-----VKGIGGYHIAASATMDDVVLKLRRRKNRP-TKPFAIM 254 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV---P 120 D S++K + L P L+L T + + L V P Sbjct: 255 GLDTSILKLLVYLSEEDEKLLSS--PQAPILLLPKREDTPVSKYVSPGLSHEGVFVAYTP 312 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LEST 179 F L+ T + S N +G T + S + + + ++ + Sbjct: 313 LHFLL-LMNTKDKFSIMTSGNSTGSPMCTT-EECAKSRMRSIADYFLVHNRVIVNRVDDS 370 Query: 180 IVNVQCEKKVRILRPGGLEIETLK 203 +V ++ V + R G ++ Sbjct: 371 VVRKTGDQYVFLRRSRGYAPRWIR 394 >gi|52842682|ref|YP_096481.1| hydrogenase maturation protein HypF [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629793|gb|AAU28534.1| hydrogenase maturation protein HypF [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 741 Score = 58.5 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 75/225 (33%), Gaps = 33/225 (14%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 ++ K + + G IA+ GL D+RN AI +L K R A P V Sbjct: 189 SVDKVAQRIRDGEIIALK-----GLGGYQLICDARNEDAISQLRLRKSREA-KPFALMVV 242 Query: 66 DISMVKKHASVDPLSLHLAK-LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 + ++ A V P + + + P +VL + L +P Sbjct: 243 NAKSAERIAEVSPQARVVLESRERP----IVLLRKKKALLPDEIAPGLNHFGIMLPSTPL 298 Query: 125 KKLI--ETYGHP-------------LAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169 L+ G+P L + SAN G+ I + K I ++ Sbjct: 299 HYLLFNSFLGNPDYCQWLDEYHSMVLVVTSANIGGEPLIIDDKKAEQGLISIADKIVSHD 358 Query: 170 GISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV 214 + ++V + + V I R G L+ + E+ V Sbjct: 359 REIITRTDDSVVRMINDTSVLIRRARGYVPAPLR--LPYEIPPTV 401 >gi|88597085|ref|ZP_01100321.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter jejuni subsp. jejuni 84-25] gi|88190774|gb|EAQ94747.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter jejuni subsp. jejuni 84-25] Length = 729 Score = 58.5 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 58/167 (34%), Gaps = 18/167 (10%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 D A ++ +FL G +AI G+ D+ N A++ L K RP P Sbjct: 200 DQEAFMQSAKFLKEGKILAIK-----GMGGFHLMCDAFNEEALKTLRLRKNRP-KKPFAL 253 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 D+ K+ A +D L P+ ++ + + I P + Sbjct: 254 MCKDLQSAKELAFIDEKEEALLGGVL-APIVILKAKKAFSLIAPDV----DKIGIMLAYT 308 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 L E + L SAN SG+ I + L + K +D Sbjct: 309 PLHLLLFEYFKGSLVATSANLSGESIIK-DEFNLCKKLDKVFDFYLD 354 >gi|260428750|ref|ZP_05782727.1| (NiFe) hydrogenase maturation protein HypF [Citreicella sp. SE45] gi|260419373|gb|EEX12626.1| (NiFe) hydrogenase maturation protein HypF [Citreicella sp. SE45] Length = 746 Score = 58.5 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 41/115 (35%), Gaps = 8/115 (6%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKL-FWPGPLT 93 LA D+ + A+ L K+RPA P + V +HA V L + P Sbjct: 218 LACDATDAEAVAALRARKRRPA-KPFALMAP-LVQVVRHAEVSEAERALLQDPAAP---- 271 Query: 94 LVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQIS 147 +VL + + + +P L G PL + S N SG+ Sbjct: 272 IVLLETAGEALPEGLAPGQGRLGWMLPYTPLHHLLCAALGRPLVMTSGNLSGEPQ 326 >gi|83591648|ref|YP_425400.1| hydrogenase maturation protein HypF [Rhodospirillum rubrum ATCC 11170] gi|83574562|gb|ABC21113.1| Hydrogenase maturation protein HypF [Rhodospirillum rubrum ATCC 11170] Length = 768 Score = 58.5 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 80/222 (36%), Gaps = 36/222 (16%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMN 58 +++ ++ LR+ + AG +A+ GL D+ P + RL K+R A Sbjct: 204 LTLDPADILRE----IRAGAIVALK-----GLGGFQLICDASQPAPVERLRRGKRRDA-K 253 Query: 59 PLICHVSDISMVKKHASVDPLSLHLAKLFWP-GPLTLVLDLL-STTDIHPLSTANLKTAC 116 P V+ ++ + V S L P P+ L+ + + L T Sbjct: 254 PFALLVASLTDARALCDV--RSAEAEALTSPERPIVLLHRRADARPPLAAAIAPGLDTLG 311 Query: 117 FRVPCGFTKKLI--ETYGHP-------------LAIPSANRSGQISITNVKHILSSSICK 161 +P + LI E G P L SANR+G I + ++ + Sbjct: 312 VMLPVTPLQYLIFHEAAGRPAGTAWLDQPTPLVLVATSANRAGAPLILEGAEV-AAELGA 370 Query: 162 EIPLIIDGGISKIGLEST-IVNVQCEKKVRILRPGGLEIETL 202 ++ ++ D + +V V ++ + R G E + Sbjct: 371 DVDVLADHDRPILARADDGVVRVLGDQARSVRRGRGQTPEPI 412 >gi|121613174|ref|YP_001000324.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter jejuni subsp. jejuni 81-176] gi|167005270|ref|ZP_02271028.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter jejuni subsp. jejuni 81-176] gi|87250403|gb|EAQ73361.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter jejuni subsp. jejuni 81-176] Length = 728 Score = 58.5 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 58/167 (34%), Gaps = 18/167 (10%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 D A ++ +FL G +AI G+ D+ N A++ L K RP P Sbjct: 200 DQEAFIQSAKFLKEGKILAIK-----GMGGFHLMCDAFNEEALKTLRLRKNRP-KKPFAL 253 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 D+ K+ A +D L P+ ++ + + I P + Sbjct: 254 MCKDLQSTKELAFIDEKEEALLGGVL-APIVILKAKKAFSLIAPDV----DKIGIMLAYT 308 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 L E + L SAN SG+ I + L + K +D Sbjct: 309 PLHLLLFEYFKGNLVATSANLSGESIIK-DEFNLRQKLDKVFDFYLD 354 >gi|227432835|ref|ZP_03914794.1| translation factor (SUA5) [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351420|gb|EEJ41687.1| translation factor (SUA5) [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 262 Score = 58.5 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 43/206 (20%), Positives = 75/206 (36%), Gaps = 25/206 (12%) Query: 14 KACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 +A L G I PT+ Y + + + R + K R P + + VK+ Sbjct: 18 EAINILKEDGGMIVSPTKVGYIIMTS--DDQGLERKFTAKNRKRNKPGVVLCGSVEQVKE 75 Query: 73 HASVDPLSLHLAKLFWPGPLTL--VLDLL--STTDIHPLSTANL-----KTACFRV---- 119 A + P + + W + L +L + I T NL +T+CF + Sbjct: 76 LAQMTPEIEQMYQQHWDEDILLGCILPWKEEAKIKIPNDGTKNLMMDKRETSCFVIKFGT 135 Query: 120 -PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 K++ E YG SAN SG+ ++ V + I LII+ + S Sbjct: 136 PSENIAKEMWEKYGKFSFASSANPSGKGNLGLVAG-IGDQIENSADLIIEADDY---VAS 191 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKR 204 +Q +K + G+ + + Sbjct: 192 ----IQPDKTLDTRYEQGVMVSMVDE 213 >gi|2183281|gb|AAB60890.1| HypF2 [Ralstonia eutropha H16] Length = 806 Score = 58.5 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 55/170 (32%), Gaps = 28/170 (16%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMN 58 M + D + + + L G +AI GL D+ N A+ RL K+R Sbjct: 208 MPVEDVDPIAETVARLQRGEIVAIK-----GLGGFHLACDAHNADAVARLRSRKQR-EEK 261 Query: 59 PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 P V++++ + + L P+ ++L L Sbjct: 262 PFAVMVANLATAAQWGDIGSGEAALLTAS-ERPI-VLLRKHGVDGRFAGVAPGLVWLGVM 319 Query: 119 VPCGFTKKLI--ETYGHP-------------LAIPSANRSGQISITNVKH 153 +P + L+ E G P L + SAN G+ +T Sbjct: 320 LPYTPLQYLLFHEAAGRPEGLGWLAQPQSLVLVMTSANPGGEPLVTGNDE 369 >gi|322375354|ref|ZP_08049867.1| hypothetical protein HMPREF0849_01070 [Streptococcus sp. C300] gi|321279617|gb|EFX56657.1| hypothetical protein HMPREF0849_01070 [Streptococcus sp. C300] Length = 259 Score = 58.5 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 40/224 (17%), Positives = 81/224 (36%), Gaps = 29/224 (12%) Query: 17 EFLD-AGLPIAIPTETVYGLAVDSRNPTA-IRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 + L G I PT+ Y + + A + R +E K+R P + + ++ A Sbjct: 17 DILKGEGGCIVCPTKVGYII---MTSDKAGLERKFEAKERNRNKPGVVLCGSMDELRALA 73 Query: 75 SVDPLSLHLAKLFWPGPLTL--VLDLLS---------TTDIHPLSTANLKTACFRVPCGF 123 ++P + W + L +L L T T+CF + G Sbjct: 74 QLNPEIEAFYQKHWDEDILLGCILPWKPEAFEKLKAYGDGREELMTDVRGTSCFVIKFGK 133 Query: 124 TKKLIET----YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + + G + SAN SG+ + V+ + I + L+I+ + S Sbjct: 134 AGEQLAAKLWEEGKMVYASSANPSGKGNRGKVEG-IGERIEGAVDLVIEADYY---VAS- 188 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSP 223 +Q +K + G+ + + + + E +++P +P Sbjct: 189 ---IQPDKTIETRYEQGVMVSMVDKDGKLIPEQGGARSTSP-AP 228 >gi|33322151|gb|AAQ06796.1|AF496136_1 hypothetical protein [Lactobacillus delbrueckii subsp. lactis] Length = 48 Score = 58.5 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%) Query: 191 ILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPR 233 +LRPG + E + + + E+ V + P++PGM HYAP Sbjct: 3 VLRPGKITPEEISQVLGEEVLINRGQVSDKDVPKAPGMKYRHYAPS 48 >gi|311112217|ref|YP_003983439.1| translation factor (SUA5) [Rothia dentocariosa ATCC 17931] gi|310943711|gb|ADP40005.1| probable translation factor (SUA5) [Rothia dentocariosa ATCC 17931] Length = 264 Score = 58.5 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 46/247 (18%), Positives = 83/247 (33%), Gaps = 35/247 (14%) Query: 15 ACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 A L G I PT+ Y L + + + R ++ K R P + + + + K Sbjct: 21 AVATLSGTGGLIVAPTKVGYIL--MATDGEGLERKFDAKLRKREKPGVVLCASLEQLDKL 78 Query: 74 ASVDPLSLHLAKLFWPGPLTL--VLDLLSTTD--IHPLSTANL-----KTACFRV----P 120 A + P + W + L +L + + +T L T+CF V P Sbjct: 79 AQMTPEIREFYRKHWDDDILLGCILPWREDAEKYLPDETTKELARDARATSCFVVRFGTP 138 Query: 121 C-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + L E G SAN SG + V + I + +I+ G Sbjct: 139 AEQIVRALWENEGKLTFASSANPSGIGNKGRVTG-IGDRIENSVDVIVRGDEY------- 190 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSP-----GMLK----SHY 230 + ++Q +K G+ + + ++ E + TP +P G+ H Sbjct: 191 VKSIQPDKTDETRHEQGVMVSMVDAEGNLVPEQHGERGVTP-APTLIRKGLDYEEIMRHL 249 Query: 231 APRSQVR 237 + Sbjct: 250 SDSFPSW 256 >gi|289677574|ref|ZP_06498464.1| SUA5/yciO/yrdC, N-terminal [Pseudomonas syringae pv. syringae FF5] Length = 101 Score = 58.5 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 39/103 (37%), Gaps = 3/103 (2%) Query: 89 PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISI 148 PGP T ++ + T +T RV T + + PL SAN +G+ + Sbjct: 1 PGPNTWLVPHQ--NLLPEWITGIHETVALRVTDHPTVRELCALVGPLISTSANPAGRPAA 58 Query: 149 TNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 + + +I ++ G + S I ++ + VR Sbjct: 59 RSRLRV-EQYFRGQIDGVLGGSLGGRRNPSVIRDIATAQIVRA 100 >gi|225874611|ref|YP_002756070.1| (NiFe) hydrogenase maturation protein HypF [Acidobacterium capsulatum ATCC 51196] gi|225793547|gb|ACO33637.1| (NiFe) hydrogenase maturation protein HypF [Acidobacterium capsulatum ATCC 51196] Length = 781 Score = 58.5 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 63/172 (36%), Gaps = 12/172 (6%) Query: 33 YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPL 92 Y LA D+ A+ L K R + P V+ I+ ++ V PL A L P+ Sbjct: 236 YQLACDATREDAVSTLRRRKHR-SEKPFAIMVAGITAAEQLCVVSPL-ERTALLSSQRPI 293 Query: 93 TLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI-----ETYGH--PLAIPSANRSGQ 145 ++L + ++ + T +P L+ E G PL + S N S + Sbjct: 294 -VLLRRKTAANLAASVSPGNPTTGVMLPSTPMHDLLFLALRELAGASIPLVMTSGNLSEE 352 Query: 146 ISITNVKHILSSSICKEIPLIIDGG-ISKIGLESTIVNVQCEKKVRILRPGG 196 + + + L + ++ ++V V ++ + I R G Sbjct: 353 PIAVDNDEA-EAKLADVADLFVHHNRRIHTRVDDSVVRVIDDEVLPIRRARG 403 >gi|222445399|ref|ZP_03607914.1| hypothetical protein METSMIALI_01033 [Methanobrevibacter smithii DSM 2375] gi|222434964|gb|EEE42129.1| hypothetical protein METSMIALI_01033 [Methanobrevibacter smithii DSM 2375] Length = 750 Score = 58.1 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 35/166 (21%), Positives = 57/166 (34%), Gaps = 19/166 (11%) Query: 1 MQIMS----ITDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEI 51 M+I I +N ++ A + L G IAI G+ D+ N A++ L + Sbjct: 184 MKICKGPEEINSNNPIKVAADKLKEGKIIAIK-----GIGGTHLVVDAYNDKAVKELRKR 238 Query: 52 KKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTAN 111 RP D+ VK +A + + P+ +VL + Sbjct: 239 LNRP-NQAFAVMSKDLDSVKGYAKLSKKEIATITSN-KRPI-VVLKKNDNYNFPESLAPG 295 Query: 112 LKTACFRVPCGFTKKLIETYG--HPLAIPSANRSGQISITNVKHIL 155 L +P L+ G + SAN G+ + K IL Sbjct: 296 LHNIGVMLPYSPMHYLLFDEGDIDTYVMTSANTPGEPMMITNKDIL 341 >gi|189500693|ref|YP_001960163.1| (NiFe) hydrogenase maturation protein HypF [Chlorobium phaeobacteroides BS1] gi|189496134|gb|ACE04682.1| (NiFe) hydrogenase maturation protein HypF [Chlorobium phaeobacteroides BS1] Length = 767 Score = 58.1 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 50/159 (31%), Gaps = 15/159 (9%) Query: 15 ACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 A L + +A V G+ D+ + A+ L + K+R P I Sbjct: 215 AVASLKSSGVVA-----VKGIGGFHLSVDAFDDKAVSALRKRKRR-EEKPFAVMARSIET 268 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129 ++K ++ + L P ++L + + +P L+ Sbjct: 269 IEKFCDIN--ASEREALCSPQAPVVLLKKKARHGLSEEIAPRNDRLGVMLPYAPLHVLLM 326 Query: 130 TYG-HPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 G L + SAN S + +S + + + Sbjct: 327 NRGPEMLVMTSANSSDEPIAIENSEAVS-RLQEIADCYL 364 >gi|309800546|ref|ZP_07694695.1| conserved hypothetical protein [Streptococcus infantis SK1302] gi|308115824|gb|EFO53351.1| conserved hypothetical protein [Streptococcus infantis SK1302] Length = 259 Score = 58.1 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 40/224 (17%), Positives = 81/224 (36%), Gaps = 29/224 (12%) Query: 17 EFLD-AGLPIAIPTETVYGLAVDSRNPTA-IRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 + L G I PT+ Y + + A + R +E K+R P + + ++ A Sbjct: 17 DILKGEGGCIVCPTKVGYII---MTSDKAGLERKFEAKERNRNKPGVVLCGSMDELRALA 73 Query: 75 SVDPLSLHLAKLFWPGPLTL--VLDLLS---------TTDIHPLSTANLKTACFRVPCGF 123 ++P + W + L +L L T T+CF + G Sbjct: 74 QLNPEIEAFYQKHWDEDILLGCILPWKPEAFEKLKGYGDGREELMTDVRGTSCFVIKFGK 133 Query: 124 TKKLIET----YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + + G + SAN SG+ + V+ + I + L+I+ + S Sbjct: 134 AGEQLAAKLWEEGKMVYASSANPSGKGNRGKVEG-IGERIEGAVDLVIEADDY---VAS- 188 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSP 223 +Q +K + G+ + + + + E +++P +P Sbjct: 189 ---IQPDKTIETRYEQGVMVSMVDKDGKLIPEQGGARSTSP-AP 228 >gi|78355602|ref|YP_387051.1| (NiFe) hydrogenase maturation protein HypF [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218007|gb|ABB37356.1| (NiFe) hydrogenase maturation protein HypF [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 777 Score = 58.1 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 49/291 (16%), Positives = 92/291 (31%), Gaps = 51/291 (17%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 D+ A+ + + L G AI GL D+ A+ RL KKRP PL Sbjct: 204 DTEAVVQTAKALAKGHIAAIK-----GLGGFHLACDATATAAVDRLRARKKRP-GKPLAV 257 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC- 121 V D++ + A + L + P+ ++ L T + P + + +P Sbjct: 258 MVPDMAAAQALAHIGSGEAALLQSV-ERPI-VLCRLKQGTPLAPQVSPHTDHVGLMLPYT 315 Query: 122 -------GFTKKLI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173 ++++ L + S N S + + L + + + Sbjct: 316 PLHHVLFHLYREILPHEACAALVMTSGNMSSEPISLGNREALL-RLHDIADIFLLHNRD- 373 Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTP--QSPGMLKSHYA 231 + ++ + V + P E + L+RA + P + G Sbjct: 374 -------ILIRTDDSVVRVNPDTHEPQFLRRARGYTPRPVFLDGEGPCVMATG------- 419 Query: 232 PRSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNL 282 P + L + G++ NL G +E A +L Sbjct: 420 PELKSTLCYTRGDQAFVSQHIGDLQ-----------NLESFGFYREIARHL 459 >gi|327400060|ref|YP_004340899.1| acylphosphatase [Archaeoglobus veneficus SNP6] gi|327315568|gb|AEA46184.1| Acylphosphatase [Archaeoglobus veneficus SNP6] Length = 768 Score = 58.1 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 53/148 (35%), Gaps = 15/148 (10%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 + + +A E +D+G IAI GL + + L +I RP P Sbjct: 195 DGIIRAAELIDSGKIIAIK-----GLGGYHIACITDDEVVWNLRKILNRPQ-QPFAVMAR 248 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125 D+ VK+ A + + + P+T++ + +L T +P Sbjct: 249 DVEAVKRVAKLSSEEENEMLSYI-RPITVL--RKKDVNSFFAVAPDLDTIGIMLPYAPIH 305 Query: 126 KLIETYGHP--LAIPSANRSGQISITNV 151 ++ + + + SAN G+ + Sbjct: 306 HILFRFLKADFIVLTSANMPGEPMFIDD 333 >gi|158314311|ref|YP_001506819.1| (NiFe) hydrogenase maturation protein HypF [Frankia sp. EAN1pec] gi|158109716|gb|ABW11913.1| (NiFe) hydrogenase maturation protein HypF [Frankia sp. EAN1pec] Length = 735 Score = 58.1 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 57/159 (35%), Gaps = 13/159 (8%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNP 59 S T L +A L G +A V GL + + +A+ L K R A P Sbjct: 132 SPTSDEPLERAAGLLRGGGILA-----VKGLGGYHLAVLAADGSAVATLRRRKHRDA-KP 185 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 V D++ V++ +DP + L P+ LV + T + Sbjct: 186 FAVMVRDLATVEEMCCLDPTARLLLTGRR-RPIVLVERCRPARRVAEAVAPGTGTLGVML 244 Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSS 157 P L+ P+ + S N S + + + + L++ Sbjct: 245 PYTPLHHLLLGLLPGPIVLTSGNISNEPIVYHDEEALAA 283 >gi|306829623|ref|ZP_07462813.1| conserved hypothetical protein [Streptococcus mitis ATCC 6249] gi|304428709|gb|EFM31799.1| conserved hypothetical protein [Streptococcus mitis ATCC 6249] Length = 259 Score = 58.1 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 40/224 (17%), Positives = 81/224 (36%), Gaps = 29/224 (12%) Query: 17 EFLD-AGLPIAIPTETVYGLAVDSRNPTA-IRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 + L G I PT+ Y + + A + R +E K+R P + + ++ A Sbjct: 17 DILKGEGGCIVCPTKVGYII---MTSDKAGLERKFEAKERNRNKPGVVLCGSMDELRALA 73 Query: 75 SVDPLSLHLAKLFWPGPLTL--VLDLLS---------TTDIHPLSTANLKTACFRVPCGF 123 ++P + W + L +L L T T+CF + G Sbjct: 74 QLNPEIEAFYQKHWDEDILLGCILPWKPEAFEKLKAYGDGREELMTDVRGTSCFVIKFGK 133 Query: 124 TKKLIET----YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + + G + SAN SG+ + V+ + I + L+I+ + S Sbjct: 134 AGEQLAAKLWEEGKMVYASSANPSGKGNRGKVEG-IGERIEGAVDLVIEADDY---VAS- 188 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSP 223 +Q +K + G+ + + + + E +++P +P Sbjct: 189 ---IQPDKTIETRYEQGVMVSMVDKDGKLIPEQGGARSTSP-AP 228 >gi|288916244|ref|ZP_06410624.1| (NiFe) hydrogenase maturation protein HypF [Frankia sp. EUN1f] gi|288352435|gb|EFC86632.1| (NiFe) hydrogenase maturation protein HypF [Frankia sp. EUN1f] Length = 840 Score = 58.1 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 50/132 (37%), Gaps = 10/132 (7%) Query: 33 YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPL 92 Y LAV + + TA+ +L K+R P D++ V++ VD + L P+ Sbjct: 255 YHLAVLAADETAVAQLRRRKRRD-GKPFALMARDLAEVERLCVVDGTARRLLTCRR-RPI 312 Query: 93 TLVLDLLSTTD-------IHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSG 144 L+ + D I P ++T +P L+ P+ + S N S Sbjct: 313 VLLDRRPAPPDGTGTSPCIAPSVAPGVRTLGIMLPYTPLHHLLLGRLPGPIVLTSGNISD 372 Query: 145 QISITNVKHILS 156 + + L+ Sbjct: 373 EPILFRDDEALA 384 >gi|126464928|ref|YP_001040037.1| (NiFe) hydrogenase maturation protein HypF [Staphylothermus marinus F1] gi|126013751|gb|ABN69129.1| (NiFe) hydrogenase maturation protein HypF [Staphylothermus marinus F1] Length = 778 Score = 58.1 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 33/213 (15%), Positives = 76/213 (35%), Gaps = 17/213 (7%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 + + + + +D G + V GL + + + +L + K RP P Sbjct: 203 DPIIETAKLIDEGYIVG-----VKGLGGYHIAALATSDGVVLKLRKRKHRP-TKPFAIMG 256 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 DIS++++ +D + + + P L+L + + + L V Sbjct: 257 LDISVLERLVYIDEEARSILES--PQAPILLLPKREDSPVSKYVSPGLSHEGVFVAYTGL 314 Query: 125 KKLI--ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIV 181 L+ ET L + S N +G+ N + + + + + + ++ +++ Sbjct: 315 HYLLLMETRDKFLIMTSGNVTGEPMCIN-EECAREKLSRVVDYFLIHDREIVNRVDDSVL 373 Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCV 214 K V + R G ++ ++ EY Sbjct: 374 RNTNGKWVFLRRSRGYAPMWIRIRSDLDGEYIA 406 >gi|306825111|ref|ZP_07458453.1| conserved hypothetical protein [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432547|gb|EFM35521.1| conserved hypothetical protein [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 259 Score = 58.1 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 37/205 (18%), Positives = 73/205 (35%), Gaps = 28/205 (13%) Query: 17 EFLD-AGLPIAIPTETVYGLAVDSRNPTA-IRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 + L G I PT+ Y + + A + R +E K+R P + + ++ A Sbjct: 17 DILKGEGGCIVCPTKVGYII---MTSDKAGLERKFEAKERNRNKPGVVLCGSMDELRALA 73 Query: 75 SVDPLSLHLAKLFWPGPLTL--VLDLLS---------TTDIHPLSTANLKTACFRVPCGF 123 ++P + W + L +L L T T+CF + G Sbjct: 74 QLNPEIEAFYQKHWDEDILLGCILPWKPEAFEKLKAYGDGREELMTDVRGTSCFVIKFGK 133 Query: 124 TKKLIET----YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + + G + SAN SG+ + V+ + I + L+I+ + S Sbjct: 134 AGEQLAAKLWEEGKMVYASSANPSGKGNRGKVEG-IGERIEGAVDLVIEADDY---VAS- 188 Query: 180 IVNVQCEKKVRILRPGGLEIETLKR 204 +Q +K + G+ + + + Sbjct: 189 ---IQPDKTIETRYEQGVMVSMVDK 210 >gi|289168054|ref|YP_003446323.1| hypothetical protein smi_1213 [Streptococcus mitis B6] gi|288907621|emb|CBJ22458.1| conserved hypothetical protein [Streptococcus mitis B6] Length = 259 Score = 58.1 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 39/224 (17%), Positives = 80/224 (35%), Gaps = 29/224 (12%) Query: 17 EFLD-AGLPIAIPTETVYGLAVDSRNPTA-IRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 + L G I PT+ Y + + A + R + K+R P + + ++ A Sbjct: 17 DILKGKGGCIVCPTKVGYII---MTSDKAGLERKFAAKERNRNKPGVVLCGSMDELRALA 73 Query: 75 SVDPLSLHLAKLFWPGPLTL--VLDLLS---------TTDIHPLSTANLKTACFRVPCGF 123 ++P + W + L +L L T T+CF + G Sbjct: 74 QLNPEIEAFYQKHWDEDILLGCILPWKPEAFEKLKAYGDGREELMTDVRGTSCFVIKFGK 133 Query: 124 TKKLIET----YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + + G + SAN SG+ + V+ + I + L+I+ + S Sbjct: 134 AGEQLAAKLWEEGKMVYASSANPSGKGNRGKVEG-IGERIEGAVDLVIEADDY---VAS- 188 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSP 223 +Q +K + G+ + + + + E +++P +P Sbjct: 189 ---IQPDKTIETRYEQGVMVSMVDKDGKLIPEQGGARSTSP-AP 228 >gi|238926678|ref|ZP_04658438.1| (NiFe) hydrogenase maturation protein HypF [Selenomonas flueggei ATCC 43531] gi|238885467|gb|EEQ49105.1| (NiFe) hydrogenase maturation protein HypF [Selenomonas flueggei ATCC 43531] Length = 567 Score = 57.8 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 33/195 (16%), Positives = 61/195 (31%), Gaps = 17/195 (8%) Query: 10 NALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 + L A + G +A V Y LA D+R+ TA+ RL K R A L Sbjct: 216 DPLAAARRVVAEGGILA-----VKGIGGYHLACDARSETAVARLRRRKHREA-KALAVMA 269 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLL--STTDIHPLSTANLKTACFRVPCG 122 ++ V+ + L P ++L + +P Sbjct: 270 GSLAAVRALCLLSAEEERLLTS--PAAPIVLLARRTDAVRPAAESVAPGNAYLGVMLPYA 327 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIV 181 L+ + SAN SG+ + + + I+ + ++ ++V Sbjct: 328 PVHLLLLGADDLWVMTSANLSGEPILYRDAEA-EEGLAEIADAILVHNREIVHRVDDSVV 386 Query: 182 NVQCEKKVRILRPGG 196 + + R G Sbjct: 387 RIGAGGPQILRRSRG 401 >gi|307709496|ref|ZP_07645953.1| hypothetical protein SMSK564_0740 [Streptococcus mitis SK564] gi|307619810|gb|EFN98929.1| hypothetical protein SMSK564_0740 [Streptococcus mitis SK564] Length = 259 Score = 57.8 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 40/224 (17%), Positives = 81/224 (36%), Gaps = 29/224 (12%) Query: 17 EFLD-AGLPIAIPTETVYGLAVDSRNPTA-IRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 + L G I PT+ Y + + A + R +E K+R P + + ++ A Sbjct: 17 DILKGEGGCIVCPTKVGYII---MTSDKAGLERKFEAKERNRNKPGVVLCGSMDELRALA 73 Query: 75 SVDPLSLHLAKLFWPGPLTL--VLDLLS---------TTDIHPLSTANLKTACFRVPCGF 123 ++P + W + L +L L T T+CF + G Sbjct: 74 QLNPEIEAFYQKHWDEDILLGCILPWKPEAFEKLKAYGDGREELMTDVRGTSCFVIKFGK 133 Query: 124 TKKLIET----YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + + G + SAN SG+ + V+ + I + L+I+ + S Sbjct: 134 AGEQLAAKLWEEGKMVYASSANPSGKGNRGKVEG-IGERIEGAVDLVIEADDY---VAS- 188 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSP 223 +Q +K + G+ + + + + E +++P +P Sbjct: 189 ---IQPDKTIETRYEQGVMVSMVDKDGKLIPEQGGARSTSP-AP 228 >gi|146319599|ref|YP_001199311.1| translation factor (SUA5) [Streptococcus suis 05ZYH33] gi|146321797|ref|YP_001201508.1| translation factor (SUA5) [Streptococcus suis 98HAH33] gi|253752597|ref|YP_003025738.1| hypothetical protein SSUSC84_1759 [Streptococcus suis SC84] gi|253754423|ref|YP_003027564.1| hypothetical protein SSU1737 [Streptococcus suis P1/7] gi|253756357|ref|YP_003029497.1| hypothetical protein SSUBM407_1807 [Streptococcus suis BM407] gi|145690405|gb|ABP90911.1| Putative translation factor (SUA5) [Streptococcus suis 05ZYH33] gi|145692603|gb|ABP93108.1| Putative translation factor (SUA5) [Streptococcus suis 98HAH33] gi|251816886|emb|CAZ52535.1| conserved hypothetical protein [Streptococcus suis SC84] gi|251818821|emb|CAZ56663.1| conserved hypothetical protein [Streptococcus suis BM407] gi|251820669|emb|CAR47431.1| conserved hypothetical protein [Streptococcus suis P1/7] gi|292559213|gb|ADE32214.1| Putative translation factor (SUA5) [Streptococcus suis GZ1] gi|319759012|gb|ADV70954.1| putative translation factor (SUA5) [Streptococcus suis JS14] Length = 261 Score = 57.8 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 36/205 (17%), Positives = 74/205 (36%), Gaps = 27/205 (13%) Query: 17 EFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75 + + G I PT+ Y + + + R ++ K+R P + + +++ A Sbjct: 17 DIIKGEGGVIVCPTKVGYIIMT--ADKAGLERKFDAKERKRNKPGVVLCGSMEELRELAQ 74 Query: 76 VDPLSLHLAKLFWPGPLTL--VLDLLS---------TTDIHPLSTANLKTACFRVPCGFT 124 + P + W + L +L L T T+CF + G Sbjct: 75 LTPEIDAFYQKHWDEDILLGCILPWKPEAYAKLQAYGDGREELMTDVRGTSCFVIKFGVA 134 Query: 125 KKLI-----ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + I E G + SAN SG+ + V+ + I ++ LII+ Sbjct: 135 GEQIAKEMWEKEGRMVYASSANPSGKGNRGKVEG-IGERIASKVDLIIEADDY------- 186 Query: 180 IVNVQCEKKVRILRPGGLEIETLKR 204 + ++Q +K + G+ + + + Sbjct: 187 VTSIQPDKTIETRYEQGVMVSMVDK 211 >gi|242399470|ref|YP_002994895.1| Hydrogenase maturation protein HypF [Thermococcus sibiricus MM 739] gi|242265864|gb|ACS90546.1| Hydrogenase maturation protein HypF [Thermococcus sibiricus MM 739] Length = 773 Score = 57.8 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 57/157 (36%), Gaps = 19/157 (12%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKK--RPAMNPLIC 62 + L++A E +D G +AI G+ D+ N +R L K+ RP P Sbjct: 204 DPLKRAAELIDKGHIVAIK-----GIGGIHIACDATNEETLRELR--KRILRPE-QPFAI 255 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 D+ ++ A V + + P+ + L + L T +P Sbjct: 256 MAKDLETIENFAIVSEIEREELTSYR-KPI-VALRKKEPFPLPETLAPGLPTIGVMLPYA 313 Query: 123 FTKKLIETYGH-PL-AIPSANRSGQISITNVKHILSS 157 T ++ Y P+ + SAN G + + + L Sbjct: 314 GTHYILFHYSKSPVYVMTSANYPGMPMVIDNETALKE 350 >gi|288553290|ref|YP_003425225.1| [NiFe] hydrogenase maturation protein HypF [Bacillus pseudofirmus OF4] gi|288544450|gb|ADC48333.1| [NiFe] hydrogenase maturation protein HypF [Bacillus pseudofirmus OF4] Length = 779 Score = 57.8 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 57/156 (36%), Gaps = 17/156 (10%) Query: 9 SNALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 +A+R + L G I ++ Y LA D + P AI L EIK RP PL Sbjct: 209 ESAIRGTIDALTEGRII-----SIKGLGGYHLACDMKQPYAITHLREIKSRP-TRPLAVM 262 Query: 64 VSDISMVKKHASVDPLSLHLAKL-FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 + + +VK++ V L P +VL + L T +P Sbjct: 263 MRSLEIVKQYCHVSLKEEELLTSPIMP---IVVLKQKINRSLPNELAPGLTTLGVMLPYT 319 Query: 123 FTKKLIETYGH--PLAIPSANRSGQISITNVKHILS 156 L+ G + + SAN SG + K + Sbjct: 320 PLHYLLFKLGGLEGIVLTSANSSGLPIKYHDKDLFE 355 >gi|302024518|ref|ZP_07249729.1| hypothetical protein Ssui0_08229 [Streptococcus suis 05HAS68] gi|330833560|ref|YP_004402385.1| hypothetical protein SSUST3_1786 [Streptococcus suis ST3] gi|329307783|gb|AEB82199.1| conserved hypothetical protein [Streptococcus suis ST3] Length = 261 Score = 57.8 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 37/205 (18%), Positives = 74/205 (36%), Gaps = 27/205 (13%) Query: 17 EFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75 + + G I PT+ Y + + + R ++ K+R P + + +++ A Sbjct: 17 DIIKGEGGVIVCPTKVGYIIMT--ADKAGLERKFDAKERKRNKPGVVLCGSMEELRELAQ 74 Query: 76 VDPLSLHLAKLFWPGPLTL--VLDLLS---------TTDIHPLSTANLKTACFRVPCGFT 124 + P + W + L +L L T T+CF + G Sbjct: 75 LTPEIDAFYQKHWDEDILLGCILPWKPEAYAKLQAYGDGREELMTDVRGTSCFVIKFGVA 134 Query: 125 KKLI-----ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + I E G + SAN SG+ + V+ + I ++ LII+ + S Sbjct: 135 GEQIAKEMWEKEGRMVYASSANPSGKGNRGKVEG-IGERIASKVDLIIEADDY---VAS- 189 Query: 180 IVNVQCEKKVRILRPGGLEIETLKR 204 +Q +K + G+ + + + Sbjct: 190 ---IQPDKTIETRYEQGVMVSMVDK 211 >gi|315613280|ref|ZP_07888189.1| conserved hypothetical protein [Streptococcus sanguinis ATCC 49296] gi|315314515|gb|EFU62558.1| conserved hypothetical protein [Streptococcus sanguinis ATCC 49296] Length = 259 Score = 57.8 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 37/205 (18%), Positives = 73/205 (35%), Gaps = 28/205 (13%) Query: 17 EFLD-AGLPIAIPTETVYGLAVDSRNPTA-IRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 + L G I PT+ Y + + A + R +E K+R P + + ++ A Sbjct: 17 DILKGEGGCIVCPTKVGYII---MTSDKAGLERKFEAKERNRNKPGVVLCGSMDELRALA 73 Query: 75 SVDPLSLHLAKLFWPGPLTL--VLDLLS---------TTDIHPLSTANLKTACFRVPCGF 123 ++P + W + L +L L T T+CF + G Sbjct: 74 QLNPEIEAFYQKHWDEDILLGCILPWKPEAFEKLKAYGDGREELMTDVRGTSCFVIKFGK 133 Query: 124 TKKLIET----YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + + G + SAN SG+ + V+ + I + L+I+ + S Sbjct: 134 AGEQLAAKLWEEGKMVYASSANPSGKGNRGKVEG-IGERIEGAVDLVIEADDY---VAS- 188 Query: 180 IVNVQCEKKVRILRPGGLEIETLKR 204 +Q +K + G+ + + + Sbjct: 189 ---IQPDKTIETRYEQGVMVSMVDK 210 >gi|302872075|ref|YP_003840711.1| (NiFe) hydrogenase maturation protein HypF [Caldicellulosiruptor obsidiansis OB47] gi|302574934|gb|ADL42725.1| (NiFe) hydrogenase maturation protein HypF [Caldicellulosiruptor obsidiansis OB47] Length = 755 Score = 57.8 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 38/168 (22%), Positives = 62/168 (36%), Gaps = 25/168 (14%) Query: 14 KACEFLD-------AGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLI 61 +A E LD G +AI G+ D N T ++RL+E K+R PL Sbjct: 199 EAIELLDFVSQKILEGYIVAIK-----GIGGFHLVCDPYNETIVKRLFESKRR-EGKPLA 252 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF-RVP 120 DI +VKK+ V+ + + + P ++ T+ NL T R Sbjct: 253 LVARDIEVVKKYCHVN----KMEEDIFSSPRCPIILFEKKTEQFSRVNGNLHTLGIMRAY 308 Query: 121 CGFTKKLIETYGH-PLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 +++ G L SAN SG I + + + ++ Sbjct: 309 TPILDYILKKTGRDFLIATSANLSGIPMIIDEGEAIY-KLEGICDYVL 355 >gi|24379784|ref|NP_721739.1| hypothetical protein SMU.1377c [Streptococcus mutans UA159] gi|24377750|gb|AAN59045.1|AE014971_7 conserved hypothetical protein [Streptococcus mutans UA159] Length = 261 Score = 57.8 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 39/205 (19%), Positives = 73/205 (35%), Gaps = 27/205 (13%) Query: 17 EFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75 E + G I PT+ Y + + + R +E KKR P + + ++ A Sbjct: 17 EIVKGEGGVIVCPTKVGYIIMTS--DKKGLERKFEAKKRNRNKPGVVLCGSMEELRALAQ 74 Query: 76 VDPLSLHLAKLFWPGPLTL--VLDLLS---------TTDIHPLSTANLKTACFRVPCGFT 124 + P + W + L +L + L T T+CF + G Sbjct: 75 LTPEIDAFYQKHWDEDILLGCILPWKAEAYEKLKAYGDGREELMTDIRGTSCFVIKFGVA 134 Query: 125 KKLI-----ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + I E G + SAN SG+ + V+ + I + L+I+ + S Sbjct: 135 GEQIAKEMWEKEGRMVYASSANPSGKGNRGKVEG-IGERIESMVDLVIEADDY---VAS- 189 Query: 180 IVNVQCEKKVRILRPGGLEIETLKR 204 +Q +K + G+ + + + Sbjct: 190 ---IQPDKTIETRYEQGVMVSMVDK 211 >gi|223933745|ref|ZP_03625718.1| conserved hypothetical protein [Streptococcus suis 89/1591] gi|223897587|gb|EEF63975.1| conserved hypothetical protein [Streptococcus suis 89/1591] Length = 261 Score = 57.8 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 37/205 (18%), Positives = 74/205 (36%), Gaps = 27/205 (13%) Query: 17 EFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75 + + G I PT+ Y + + + R ++ K+R P + + +++ A Sbjct: 17 DIIKGEGGVIVCPTKVGYIIMT--ADKAGLERKFDAKERKRNKPGVVLCGSMEELRELAQ 74 Query: 76 VDPLSLHLAKLFWPGPLTL--VLDLLS---------TTDIHPLSTANLKTACFRVPCGFT 124 + P + W + L +L L T T+CF + G Sbjct: 75 LTPEIDAFYQKHWDEDILLGCILPWKPEAYAKLQAYGDGREELMTDVRGTSCFVIKFGVA 134 Query: 125 KKLI-----ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + I E G + SAN SG+ + V+ + I ++ LII+ + S Sbjct: 135 GEQIAKEMWEKEGRMVYASSANPSGKGNRGKVEG-IGERIASKVDLIIEADDY---VAS- 189 Query: 180 IVNVQCEKKVRILRPGGLEIETLKR 204 +Q +K + G+ + + + Sbjct: 190 ---IQPDKTIETRYEQGVMVSMVDK 211 >gi|323333629|gb|EGA75022.1| Sua5p [Saccharomyces cerevisiae AWRI796] Length = 102 Score = 57.8 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 7/73 (9%) Query: 191 ILRPGGLEIETLKRA-------ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 +LRPGG E + + VE + V++ ++PGM HY+P ++V L H Sbjct: 2 LLRPGGFTYEEIVKLGGEAWSLCKVENKKTVEKGEKVRTPGMKYRHYSPSAKVVLLVPHC 61 Query: 244 NPREALIRFGNVP 256 L + Sbjct: 62 EGDGILKGVDRME 74 >gi|307704934|ref|ZP_07641825.1| hypothetical protein SMSK597_0927 [Streptococcus mitis SK597] gi|307706721|ref|ZP_07643526.1| hypothetical protein SMSK321_0685 [Streptococcus mitis SK321] gi|307708798|ref|ZP_07645260.1| conserved hypothetical protein [Streptococcus mitis NCTC 12261] gi|322376806|ref|ZP_08051299.1| hypothetical protein HMPREF0851_00597 [Streptococcus sp. M334] gi|307615164|gb|EFN94375.1| conserved hypothetical protein [Streptococcus mitis NCTC 12261] gi|307617806|gb|EFN96968.1| hypothetical protein SMSK321_0685 [Streptococcus mitis SK321] gi|307621548|gb|EFO00594.1| hypothetical protein SMSK597_0927 [Streptococcus mitis SK597] gi|321282613|gb|EFX59620.1| hypothetical protein HMPREF0851_00597 [Streptococcus sp. M334] Length = 259 Score = 57.8 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 39/224 (17%), Positives = 80/224 (35%), Gaps = 29/224 (12%) Query: 17 EFLD-AGLPIAIPTETVYGLAVDSRNPTA-IRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 + L G I PT+ Y + + A + R + K+R P + + ++ A Sbjct: 17 DILKGEGGCIVCPTKVGYII---MTSDKAGLERKFAAKERNRNKPGVVLCGSMDELRALA 73 Query: 75 SVDPLSLHLAKLFWPGPLTL--VLDLLS---------TTDIHPLSTANLKTACFRVPCGF 123 ++P + W + L +L L T T+CF + G Sbjct: 74 QLNPEIEAFYQKHWDEDILLGCILPWKPEAFEKLKAYGDGREELMTDVRGTSCFVIKFGK 133 Query: 124 TKKLIET----YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + + G + SAN SG+ + V+ + I + L+I+ + S Sbjct: 134 AGEQLAAKLWEEGKMVYASSANPSGKGNRGKVEG-IGERIEGAVDLVIEADDY---VAS- 188 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSP 223 +Q +K + G+ + + + + E +++P +P Sbjct: 189 ---IQPDKTIETRYEQGVMVSMVDKDGKLIPEQGGARSTSP-AP 228 >gi|312127856|ref|YP_003992730.1| (nife) hydrogenase maturation protein hypf [Caldicellulosiruptor hydrothermalis 108] gi|311777875|gb|ADQ07361.1| (NiFe) hydrogenase maturation protein HypF [Caldicellulosiruptor hydrothermalis 108] Length = 755 Score = 57.8 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 52/135 (38%), Gaps = 8/135 (5%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 L D N T ++RL+E K+R PL DI +VKK+ V+ + + + P Sbjct: 227 LVCDPYNETVVKRLFESKRR-EGKPLALVAQDIEVVKKYCHVN----KMEEDIFSSPRCP 281 Query: 95 VLDLLSTTDIHPLSTANLKTACF-RVPCGFTKKLIETYGH-PLAIPSANRSGQISITNVK 152 ++ T+ NL T R +++ G L SAN SG I + Sbjct: 282 IILFEKKTEHFSHVNGNLHTLGIMRAYTPILDYILKKTGRDFLIATSANLSGIPMIIDEG 341 Query: 153 HILSSSICKEIPLII 167 + + ++ Sbjct: 342 EAI-QKLEGICDYVL 355 >gi|312134937|ref|YP_004002275.1| (nife) hydrogenase maturation protein hypf [Caldicellulosiruptor owensensis OL] gi|311774988|gb|ADQ04475.1| (NiFe) hydrogenase maturation protein HypF [Caldicellulosiruptor owensensis OL] Length = 755 Score = 57.8 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 52/135 (38%), Gaps = 8/135 (5%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 L D N T ++RL+E K+R PL DI +VKK+ V+ + + + P Sbjct: 227 LVCDPYNETIVKRLFESKRR-EGKPLALVARDIEVVKKYCHVN----KMEEDIFSSPRCP 281 Query: 95 VLDLLSTTDIHPLSTANLKTACF-RVPCGFTKKLIETYGH-PLAIPSANRSGQISITNVK 152 ++ T+ NL T R +++ G L SAN SG I + Sbjct: 282 IILFEKKTEHFSHVNGNLHTLGIMRAYTPILDYILKKTGRDFLIATSANLSGIPMIIDEG 341 Query: 153 HILSSSICKEIPLII 167 + + ++ Sbjct: 342 EAI-QKLEGICDYVL 355 >gi|320173436|gb|EFW48635.1| NiFe hydrogenase metallocenter assembly protein HypF [Shigella dysenteriae CDC 74-1112] Length = 766 Score = 57.8 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 55/155 (35%), Gaps = 20/155 (12%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 +L+ A L G +AI G+ D+RN A+ L K RPA PL Sbjct: 216 EASLQAAIAQLKMGNIVAIK-----GIGGFHLACDARNSNAVATLRARKHRPA-KPLAVM 269 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 + A P + L P +++D ++ +L +P Sbjct: 270 L-------PVADGLPDAARQL-LTTPAAPIVLVDKKYVPELCDDIAPDLNEVGVMLPANP 321 Query: 124 -TKKLIETYGHPLAIPSANRSGQISITNVKHILSS 157 L++ PL + S N SG+ + + L+ Sbjct: 322 LQHLLLQELQCPLVMTSGNLSGKPPAISNEQALAD 356 >gi|206890543|ref|YP_002248664.1| [NiFe] hydrogenase maturation protein HypF [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742481|gb|ACI21538.1| [NiFe] hydrogenase maturation protein HypF [Thermodesulfovibrio yellowstonii DSM 11347] Length = 830 Score = 57.4 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 13/125 (10%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 N + +A + G +AI GL D+RN A++ L + KKR + P Sbjct: 197 ENPIPEAIRVIKEGKILAIR-----GLGGFHLCCDARNEEAVKELRKRKKR-SNKPFALM 250 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 + ++K V + P+ ++L ++ F +P Sbjct: 251 SPSVEAIEKFCFVSDEERKILISLM-RPI-VLLRKKPQCNLPEALALKNAYLGFMLPYTP 308 Query: 124 TKKLI 128 L+ Sbjct: 309 LHYLL 313 >gi|32265825|ref|NP_859857.1| transcriptional regulatory protein HypF [Helicobacter hepaticus ATCC 51449] gi|32261874|gb|AAP76923.1| transcriptional regulatory protein HypF [Helicobacter hepaticus ATCC 51449] Length = 807 Score = 57.4 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 58/166 (34%), Gaps = 21/166 (12%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 D L+ + + AG +AI G+ ++ N I+ L K RP P Sbjct: 207 DIKLLKLIVQKIKAGKIVAIK-----GVGGFNLVANASNVQVIKTLRNRKNRP-HKPFAV 260 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPG-PLTLVLDLLSTTDIHP-----LSTANLKTAC 116 ++ + A ++ L P P+ L+ + I L +++ Sbjct: 261 MFKNLQDISSVAHINEEEKR--ALLSPQAPIVLLERHFKSEGIINEECFNLIAPQIQSVG 318 Query: 117 FRVPCGFTKKLI-ETYGHPLAIPSANRSGQISITNVKHILSSSICK 161 +P L+ PL SAN SG+ IT+ + L + Sbjct: 319 AILPYNGIMHLLFTLLDMPLIFTSANLSGEPIITHAQE-LRQKLGG 363 >gi|148360073|ref|YP_001251280.1| hydrogenase maturation protein HypF [Legionella pneumophila str. Corby] gi|296108106|ref|YP_003619807.1| hydrogenase maturation protein HypF [Legionella pneumophila 2300/99 Alcoy] gi|148281846|gb|ABQ55934.1| hydrogenase maturation protein HypF [Legionella pneumophila str. Corby] gi|295650008|gb|ADG25855.1| hydrogenase maturation protein HypF [Legionella pneumophila 2300/99 Alcoy] Length = 741 Score = 57.4 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 74/224 (33%), Gaps = 31/224 (13%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 ++ K + + G IA+ GL D+RN AI +L K R A P V Sbjct: 189 SVDKVAQRIRDGEIIALK-----GLGGYQLICDARNEGAISQLRLRKSREA-KPFALMVV 242 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125 + +K A V P + L P +VL + L +P Sbjct: 243 NAKSAEKIAEVSPQA-RLVLESRERP--IVLLRKKKALLPDGIAPGLNHFGIMLPSTPLH 299 Query: 126 KLI--ETYGHP-------------LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 L+ G+P L + SAN G+ I + K I +I Sbjct: 300 YLLFNSFLGNPDYCQWLDEYHSMVLVVTSANIGGEPLIIDDKKAEQGLISIADKIISHDR 359 Query: 171 ISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV 214 + ++V + + V I R G L+ + E+ V Sbjct: 360 EIITRTDDSVVRMVNDTSVLIRRARGYVPAPLR--LPYEIPPTV 401 >gi|226306146|ref|YP_002766106.1| hydrogenase maturation protein HypF [Rhodococcus erythropolis PR4] gi|226185263|dbj|BAH33367.1| probable hydrogenase maturation protein HypF [Rhodococcus erythropolis PR4] Length = 762 Score = 57.4 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 57/174 (32%), Gaps = 21/174 (12%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59 ++T AL +A L G +A V G+ D+R+ + L E K RP+ P Sbjct: 196 AVTGEGALLRARSLLRDGKILA-----VKGIGGFHMACDARDDRVVHDLRERKHRPS-KP 249 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 L V D+ + V P+ LV S + P + + Sbjct: 250 LAVMVRDVREARALGVVGDAEADAM-SSRERPIVLVAK-ASGYTLSPSIAPGIPDIGIML 307 Query: 120 PCGFTKKLIETYGH------PLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 + L+ L + SAN G+ + + + + ++ Sbjct: 308 AYNPIQHLLLGLAGDAAGPAALVMTSANIGGEPILYSDDDL--ERVGDLADGVL 359 >gi|291279920|ref|YP_003496755.1| Ni-Fe hydrogenase maturation protein HypF [Deferribacter desulfuricans SSM1] gi|290754622|dbj|BAI80999.1| Ni-Fe hydrogenase maturation protein HypF [Deferribacter desulfuricans SSM1] Length = 758 Score = 57.4 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 22/150 (14%), Positives = 53/150 (35%), Gaps = 14/150 (9%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 +A+++ + ++ G IA+ GL D+ N AI++L KKR P + Sbjct: 195 DAIKEVAKVVNDGGIIALK-----GLGGYHLICDATNDEAIKKLRIHKKR-EYKPFAVMI 248 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 D++++ + + + P L+++ + + Sbjct: 249 KDLNILTDKYKLKLSNTEKLIITSPQSPILIVNW-PNHPLSEYVNPLNNRLGIMITYTPL 307 Query: 125 KKLIETYGHP--LAIPSANRSGQISITNVK 152 KL+ + + + S N + + + Sbjct: 308 HKLLLNFINTDFIVATSGNLRDEPIAIDEE 337 >gi|255930125|ref|XP_002556622.1| Pc06g00060 [Penicillium chrysogenum Wisconsin 54-1255] gi|211581235|emb|CAP78999.1| Pc06g00060 [Penicillium chrysogenum Wisconsin 54-1255] Length = 236 Score = 57.4 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 48/230 (20%), Positives = 81/230 (35%), Gaps = 24/230 (10%) Query: 1 MQIMSITDSNALRKAC-EFLDAGLPIAIPTETV-YGLAVDSRNPTAIRRLYEIKKRPAMN 58 M + +A E L G +P +V YG+ + +P A+ R++ K+R Sbjct: 1 MSYYKVPSPKEDARAVFEILKRGGIAILPM-SVGYGI--TAIDPDALDRIFRTKQRQPHK 57 Query: 59 PLICHVSDISMVKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANL--- 112 V + + + P + + KL PL +V S I L Sbjct: 58 R-HAMVGSYFLHRDIHILPPKEVGMVKLLTVDLDLPLGIVAPYRSDHPIIQKLPPRLLAQ 116 Query: 113 ----KTACFRVPCGFTKKLIETY----GHPLAIPSANRSGQISITNVKHILSSSICKEIP 164 T V G + + PL SAN +G+ V + I + Sbjct: 117 SVVEGTLAMLVNGGALLEELSRLAALEQLPLMGSSANITGK-GAKTVVEDIEPEILEVAD 175 Query: 165 LIIDGGISKIGLE---STIVNVQCEKKVRILRPGGLEIETLKRAISVELE 211 ++ID G K ST+++ + K VR + + L+R +EL Sbjct: 176 IVIDYGRQKFHHPRVSSTMIDFRTIKVVRYGACYDVIQDALRRFYGIELP 225 >gi|319947120|ref|ZP_08021354.1| translation factor (SUA5) [Streptococcus australis ATCC 700641] gi|319747168|gb|EFV99427.1| translation factor (SUA5) [Streptococcus australis ATCC 700641] Length = 261 Score = 57.4 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 77/225 (34%), Gaps = 29/225 (12%) Query: 17 EFLD-AGLPIAIPTETVYGLAVDSRNPTA-IRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 + L G I PT+ Y + + A + R +E K+R P + + ++ A Sbjct: 17 DILKGEGGCIVCPTKVGYII---MTSDKAGLERKFEAKERNRNKPGVVLCGSMDELRALA 73 Query: 75 SVDPLSLHLAKLFWPGPLTL--VLDLLSTT---------DIHPLSTANLKTACFRVPCGF 123 ++P + W + L +L L T T+CF + G Sbjct: 74 QLNPEIEAFYQKHWDEDILLGCILPWREDAYAKLQAFGDGREELMTDVRGTSCFVIKFGK 133 Query: 124 TKKLI-----ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 + I E G + SAN SG+ + V+ + I + L+I+ + S Sbjct: 134 AGEQIAKEMWEKEGKMVYASSANPSGKGNRGKVEG-IGERIEGAVDLVIEADDY---VAS 189 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSP 223 +Q +K + G+ + + + E S P Sbjct: 190 ----IQPDKTIETRYEQGVMVSMVDAEGKLIPEQGAGSRSVNTCP 230 >gi|296876579|ref|ZP_06900629.1| probable translation factor (SUA5) [Streptococcus parasanguinis ATCC 15912] gi|312867629|ref|ZP_07727835.1| conserved hypothetical protein [Streptococcus parasanguinis F0405] gi|322389461|ref|ZP_08063013.1| translation factor (SUA5) [Streptococcus parasanguinis ATCC 903] gi|296432398|gb|EFH18195.1| probable translation factor (SUA5) [Streptococcus parasanguinis ATCC 15912] gi|311096692|gb|EFQ54930.1| conserved hypothetical protein [Streptococcus parasanguinis F0405] gi|321143839|gb|EFX39265.1| translation factor (SUA5) [Streptococcus parasanguinis ATCC 903] Length = 261 Score = 57.4 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 77/225 (34%), Gaps = 29/225 (12%) Query: 17 EFLD-AGLPIAIPTETVYGLAVDSRNPTA-IRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 + L G I PT+ Y + + A + R +E K+R P + + ++ A Sbjct: 17 DILKGEGGCIVCPTKVGYII---MTSDKAGLERKFEAKERNRNKPGVVLCGSMDELRALA 73 Query: 75 SVDPLSLHLAKLFWPGPLTL--VLDLLSTT---------DIHPLSTANLKTACFRVPCGF 123 ++P + W + L +L L T T+CF + G Sbjct: 74 QLNPEIEAFYQKHWDEDILLGCILPWREDAYAKLQAFGDGREELMTDVRGTSCFVIKFGK 133 Query: 124 TKKLI-----ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 + I E G + SAN SG+ + V+ + I + L+I+ + S Sbjct: 134 AGEQIAKEMWEKEGKMVYASSANPSGKGNRGKVEG-IGERIEGAVDLVIEADDY---VAS 189 Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSP 223 +Q +K + G+ + + + E S P Sbjct: 190 ----IQPDKTIETRYEQGVMVSMVDAEGKLIPEQGAGSRSVNTCP 230 >gi|288920949|ref|ZP_06415243.1| (NiFe) hydrogenase maturation protein HypF [Frankia sp. EUN1f] gi|288347643|gb|EFC81926.1| (NiFe) hydrogenase maturation protein HypF [Frankia sp. EUN1f] Length = 943 Score = 57.4 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 41/130 (31%), Gaps = 11/130 (8%) Query: 33 YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPL 92 Y LA D+ A+ L K RP PL V+D++ + A + L P Sbjct: 319 YHLACDAGASDAVALLRARKGRP-DKPLAVMVADLASAARLADLSAAERELLAS--PAAP 375 Query: 93 TLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI------ETYGHP--LAIPSANRSG 144 ++ +T + L + L+ P L + S NRSG Sbjct: 376 IVLARRKATAPVSELVAPGSPLIGLLLAYTPLHHLLFTPVPGADVDPPQSLVMTSGNRSG 435 Query: 145 QISITNVKHI 154 + Sbjct: 436 EPICIADDEA 445 >gi|322387942|ref|ZP_08061549.1| translation factor (SUA5) [Streptococcus infantis ATCC 700779] gi|321141215|gb|EFX36713.1| translation factor (SUA5) [Streptococcus infantis ATCC 700779] Length = 259 Score = 57.4 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 40/224 (17%), Positives = 81/224 (36%), Gaps = 29/224 (12%) Query: 17 EFLD-AGLPIAIPTETVYGLAVDSRNPTA-IRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 + L G I PT+ Y + + A + R +E K+R P + + ++ A Sbjct: 17 DILKGEGGCIVCPTKVGYII---MTSDKAGLERKFEAKERNRNKPGVVLCGSMDELRALA 73 Query: 75 SVDPLSLHLAKLFWPGPLTL--VLDLLS---------TTDIHPLSTANLKTACFRVPCGF 123 ++P + W + L +L L T T+CF + G Sbjct: 74 QLNPEIEAFYQKHWDEDILLGCILPWKPEAFEKLKAYGDGREELMTDVRGTSCFVIKFGK 133 Query: 124 TKKLIET----YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + + G + SAN SG+ + V+ + I + L+I+ + S Sbjct: 134 AGEQLAAKLWEEGKMVYASSANPSGKGNRGKVEG-IGQRIEGAVDLVIEADDY---VAS- 188 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSP 223 +Q +K + G+ + + + + E +++P +P Sbjct: 189 ---IQPDKTIETRYEQGVMVSMVDKDGKLIPEQGGARSTSP-AP 228 >gi|209552032|ref|YP_002283948.1| (NiFe) hydrogenase maturation protein HypF [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209539625|gb|ACI59556.1| (NiFe) hydrogenase maturation protein HypF [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 784 Score = 57.0 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 53/158 (33%), Gaps = 14/158 (8%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNP 59 I +A+ A + L G +A V G+ D RNP A+ L K+R P Sbjct: 206 PIPAEDAIEAARDRLADGQILA-----VKGIGGFHLIVDPRNPAAVATLRSRKRR-YKKP 259 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 L D K S+ + P P+ ++LD L+ + P +A + Sbjct: 260 LALMCRDSETASKFVSMGAFEKATLESA-PRPI-VLLDKLAPNPLAPDVSAGTMQHGMML 317 Query: 120 PCGFTKKLIETYGH-PLAIPSANRSGQISITNVKHILS 156 L+ L + SAN S + Sbjct: 318 AYTPIHHLLLDGRFDALIVTSANLSDDPIEFRNDEAIE 355 >gi|296111539|ref|YP_003621921.1| hypothetical protein LKI_07065 [Leuconostoc kimchii IMSNU 11154] gi|295833071|gb|ADG40952.1| hypothetical protein LKI_07065 [Leuconostoc kimchii IMSNU 11154] Length = 262 Score = 57.0 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 42/207 (20%), Positives = 75/207 (36%), Gaps = 25/207 (12%) Query: 13 RKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +A L G I PT+ Y + + + R + K R P + + VK Sbjct: 17 EEAINILKEDGGMIVSPTKVGYIIMTS--DDKGLERKFAAKNRKRNKPGVVLCGSVEQVK 74 Query: 72 KHASVDPLSLHLAKLFWPGPLTL--VLDLLST--TDIHPLSTANL-----KTACFRV--- 119 + A + P + + W + L +L + + I T +L +T+CF + Sbjct: 75 QLAQMTPEIEQMYQTHWDEDILLGCILPWQAEAISKIPNDGTKDLMMDQRETSCFVIKFG 134 Query: 120 --PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 K++ E YG SAN SG+ + V + I LII+ + Sbjct: 135 TPSENIAKEMWEKYGKFSFASSANPSGKGNRGLVTG-IGDQIENAADLIIEADDY---VA 190 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKR 204 S +Q +K + G+ + + Sbjct: 191 S----IQPDKTLDTRYEQGVMVSMVDE 213 >gi|218904407|ref|YP_002452241.1| hydrogenase maturation protein HypF [Bacillus cereus AH820] gi|218536992|gb|ACK89390.1| hydrogenase maturation protein HypF [Bacillus cereus AH820] Length = 776 Score = 57.0 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 55/169 (32%), Gaps = 15/169 (8%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNP 59 +++ N + K + L G +AI GL D N A++ L + KKR P Sbjct: 203 NVSTDNPIEKTIDLLKKGKILAIK-----GLGGYHLVVDPMNHEAVKELRKRKKRDE-KP 256 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 S + VK A + L + P+ ++L+ I + T + Sbjct: 257 FALMSSQLDDVKNFAEITKNEETLL-VSKERPI-VLLNKKDNEYISSDVAPSNNTYGVML 314 Query: 120 PCGFTKKLIETYGH-PLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 LI L SAN S + + + + + Sbjct: 315 AYTPLHHLILRGNFIALIATSANVSDEPIVYKDADAI-EQLKGIADYYL 362 >gi|304315411|ref|YP_003850558.1| hydrogenase maturation factor HypF [Methanothermobacter marburgensis str. Marburg] gi|302588870|gb|ADL59245.1| predicted hydrogenase maturation factor HypF [Methanothermobacter marburgensis str. Marburg] Length = 766 Score = 57.0 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 58/158 (36%), Gaps = 15/158 (9%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPL 60 I N L+ A EFLD G +A V G+ + + A+ +L RP+ P Sbjct: 196 IETDNPLKMAAEFLDEGEILA-----VKGIGGTHLVCRADDEDAVMKLRSRLGRPS-QPF 249 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 C D+ V+ +A + + A P+ +VL+ S + P L +P Sbjct: 250 ACMSPDVPSVEVYACISE-AEEKALTSRRRPI-VVLNKNSDYPLAPSVAPGLHNIGVMLP 307 Query: 121 CGFTKKLIETYGHPLA--IPSANRSGQISITNVKHILS 156 ++ Y A + SAN+ G I Sbjct: 308 YSGMHHVLFRYTAAPAYVMTSANKPGDPMFIRNSEITR 345 >gi|300172567|ref|YP_003771732.1| hypothetical protein LEGAS_0265 [Leuconostoc gasicomitatum LMG 18811] gi|299886945|emb|CBL90913.1| conserved hypothetical protein [Leuconostoc gasicomitatum LMG 18811] Length = 262 Score = 57.0 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 66/180 (36%), Gaps = 18/180 (10%) Query: 14 KACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 +A L G I PT+ Y + + + R + K R P + I VK+ Sbjct: 18 EAISILKEDGGMIVSPTKVGYIIMTS--DDKGLERKFAAKNRKRNKPGVVLCGSIEQVKE 75 Query: 73 HASVDPLSLHLAKLFWPGPLTL--VLDLL--STTDIHPLSTANL-----KTACFRV---- 119 A + P + + W + L +L + + + T +L +T+CF + Sbjct: 76 LAQMTPEIEQMYQKHWDEDILLGCILPWKEEAKSKLPNDGTKDLMMDKRETSCFVIKFGT 135 Query: 120 -PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 K++ YG SAN SG+ + V + I LII+ ++S Sbjct: 136 PSENIAKEMWGKYGKFSFASSANPSGKGNRGVVAG-IGDQIENAADLIIEANDYVASIQS 194 >gi|290580256|ref|YP_003484648.1| hypothetical protein SmuNN2025_0730 [Streptococcus mutans NN2025] gi|254997155|dbj|BAH87756.1| hypothetical protein [Streptococcus mutans NN2025] Length = 261 Score = 57.0 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 39/205 (19%), Positives = 73/205 (35%), Gaps = 27/205 (13%) Query: 17 EFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75 E + G I PT+ Y + + + R +E KKR P + + ++ A Sbjct: 17 EIVKGEGGVIVCPTKVGYIIMTS--DKKGLERKFEAKKRNRNKPGVVLCGSMEELRALAQ 74 Query: 76 VDPLSLHLAKLFWPGPLTL--VLDLLS---------TTDIHPLSTANLKTACFRVPCGFT 124 + P + W + L +L + L T T+CF + G Sbjct: 75 LTPEIDVFYQKHWDEDILLGCILPWKAEAYEKLKAYGDGREELMTDIRGTSCFVIKFGVA 134 Query: 125 KKLI-----ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + I E G + SAN SG+ + V+ + I + L+I+ + S Sbjct: 135 GEQIAKEMWEKEGRMVYASSANPSGKGNRGKVEG-IGERIESMVDLVIEADDY---VAS- 189 Query: 180 IVNVQCEKKVRILRPGGLEIETLKR 204 +Q +K + G+ + + + Sbjct: 190 ---IQPDKTIETRYEQGVMVSMVDK 211 >gi|228915869|ref|ZP_04079444.1| Hydrogenase maturation protein [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229185500|ref|ZP_04312680.1| Hydrogenase maturation protein [Bacillus cereus BGSC 6E1] gi|228597895|gb|EEK55535.1| Hydrogenase maturation protein [Bacillus cereus BGSC 6E1] gi|228843687|gb|EEM88761.1| Hydrogenase maturation protein [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 776 Score = 57.0 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 56/167 (33%), Gaps = 19/167 (11%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICH 63 N + K + L G +AI GL D N A++ L + KKR P Sbjct: 207 DNPIEKTIDLLKKGKILAIK-----GLGGYHLVVDPMNHEAVKELRKRKKRDE-KPFALM 260 Query: 64 VSDISMVKKHASV--DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 S + VK A + + +L ++K P+ ++L+ I N T + Sbjct: 261 SSQLDDVKNFAEITKNEEALLVSKE---RPI-VLLNKKENEYISSDVAPNNNTYGVMLAY 316 Query: 122 GFTKKLIETYGH-PLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 LI L SAN S + + + + + Sbjct: 317 TPLHHLILRGNFIALIATSANVSDEPIVYKDGDAI-EQLKGIADYYL 362 >gi|196042788|ref|ZP_03110027.1| hydrogenase maturation protein HypF [Bacillus cereus 03BB108] gi|225865235|ref|YP_002750613.1| [NiFe] hydrogenase maturation protein HypF [Bacillus cereus 03BB102] gi|196026272|gb|EDX64940.1| hydrogenase maturation protein HypF [Bacillus cereus 03BB108] gi|225788262|gb|ACO28479.1| [NiFe] hydrogenase maturation protein HypF [Bacillus cereus 03BB102] Length = 776 Score = 57.0 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 56/167 (33%), Gaps = 19/167 (11%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICH 63 N + K + L G +AI GL D N A++ L + KKR P Sbjct: 207 DNPIEKTIDLLKKGKILAIK-----GLGGYHLVVDPMNHEAVKELRKRKKRDE-KPFALM 260 Query: 64 VSDISMVKKHASV--DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 S + VK A + + +L ++K P+ ++L+ I N T + Sbjct: 261 SSQLDDVKNFAEITKNEEALLVSKE---RPI-VLLNKKENEYISSDVAPNNNTYGVMLAY 316 Query: 122 GFTKKLIETYGH-PLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 LI L SAN S + + + + + Sbjct: 317 TPLHHLILRGNFIALIATSANVSDEPIVYKDGDAI-EQLKGIADYYL 362 >gi|118478561|ref|YP_895712.1| hydrogenase maturation protein [Bacillus thuringiensis str. Al Hakam] gi|118417786|gb|ABK86205.1| hydrogenase maturation protein [Bacillus thuringiensis str. Al Hakam] Length = 793 Score = 57.0 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 56/167 (33%), Gaps = 19/167 (11%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICH 63 N + K + L G +AI GL D N A++ L + KKR P Sbjct: 224 DNPIEKTIDLLKKGKILAIK-----GLGGYHLVVDPMNHEAVKELRKRKKRDE-KPFALM 277 Query: 64 VSDISMVKKHASV--DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 S + VK A + + +L ++K P+ ++L+ I N T + Sbjct: 278 SSQLDDVKNFAEITKNEEALLVSKE---RPI-VLLNKKENEYISSDVAPNNNTYGVMLAY 333 Query: 122 GFTKKLIETYGH-PLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 LI L SAN S + + + + + Sbjct: 334 TPLHHLILRGNFLALIATSANVSDEPIVYKDGDAI-EQLKGIADYYL 379 >gi|283956033|ref|ZP_06373522.1| hypothetical protein gi|283792509|gb|EFC31289.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter jejuni subsp. jejuni 1336] Length = 729 Score = 57.0 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 58/167 (34%), Gaps = 18/167 (10%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 D A ++ +FL G +AI G+ D+ N A++ L K RP P Sbjct: 200 DQEAFMQSSKFLKEGKILAIK-----GMGGFHLMCDAFNEEALKTLRLRKNRP-KKPFAL 253 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 D+ K+ A +D L P+ ++ + + I P + Sbjct: 254 MCKDLQSAKELAFIDEKEESLLGGVL-APIVILKAKKAFSLIAPDV----DKIGIMLAYT 308 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 L E + L SAN SG+ I + L + K +D Sbjct: 309 PLHLLLFEYFKGSLVATSANLSGESIIK-DEFNLCQKLDKVFDFYLD 354 >gi|220934450|ref|YP_002513349.1| (NiFe) hydrogenase maturation protein HypF [Thioalkalivibrio sp. HL-EbGR7] gi|219995760|gb|ACL72362.1| (NiFe) hydrogenase maturation protein HypF [Thioalkalivibrio sp. HL-EbGR7] Length = 757 Score = 57.0 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 51/141 (36%), Gaps = 10/141 (7%) Query: 33 YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS-----DISMVKKHASVDPLSLHLAKLF 87 Y L D+ +P + RL E K RP PL ++ +++HA L Sbjct: 225 YHLLCDATDPAVVARLRERKHRP-HKPLAVLFPWEGDDGLASLRRHAHPGDAEAALLTG- 282 Query: 88 WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI-ETYGHPLAIPSANRSGQI 146 P +++ L + + L +P L+ +G PL SANRSG+ Sbjct: 283 -PERPIVLVTLKADLGLAKGIAPGLSEVGAMLPYSPLHHLLSRDFGAPLVATSANRSGEP 341 Query: 147 SITNVKHILSSSICKEIPLII 167 + +++ + Sbjct: 342 VFIAAAEV-EAALGSVADAFL 361 >gi|205355472|ref|ZP_03222243.1| transcriptional regulatory protein HypF [Campylobacter jejuni subsp. jejuni CG8421] gi|205346706|gb|EDZ33338.1| transcriptional regulatory protein HypF [Campylobacter jejuni subsp. jejuni CG8421] Length = 729 Score = 56.6 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 57/167 (34%), Gaps = 18/167 (10%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 D A ++ +FL G +AI G+ D+ N ++ L K RP P Sbjct: 200 DQEAFIQSAKFLKEGKILAIK-----GMGGFHLMCDAFNEEVLKTLRLRKNRP-KKPFAL 253 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 D+ K+ A +D L P+ ++ + + I P + Sbjct: 254 MCKDLQSAKELAFIDEKEEALLGGVL-APIVILKAKKAFSLIAPDV----DKIGIMLAYT 308 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 L E + L SAN SG+ I + L + K +D Sbjct: 309 PLHLLLFEYFKGSLVATSANLSGESIIK-DEFNLRQKLDKVFDFYLD 354 >gi|83591002|ref|YP_431011.1| (NiFe) hydrogenase maturation protein HypF [Moorella thermoacetica ATCC 39073] gi|83573916|gb|ABC20468.1| (NiFe) hydrogenase maturation protein HypF [Moorella thermoacetica ATCC 39073] Length = 767 Score = 56.6 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 53/157 (33%), Gaps = 16/157 (10%) Query: 17 EFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 FL G +A V GL D++N A++ L K R A PL + + Sbjct: 217 RFLQDGKILA-----VKGLGGFHLVCDAKNRAALKTLRRRKGREA-KPLAVMCL-LETAR 269 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130 K+ V P L P ++L + ++ +KT +P L+ Sbjct: 270 KYCYVGPEEEKLLSS--PQAPIVILTKRADCNLPDELAPGMKTLGIMLPYTPLHLMLLNG 327 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 L + S NR+G + L + + Sbjct: 328 PLEILVMTSGNRNGLPLAKDNGRAL-EELGGIADYFL 363 >gi|78187316|ref|YP_375359.1| hydrogenase maturation protein HypF [Chlorobium luteolum DSM 273] gi|78167218|gb|ABB24316.1| Hydrogenase maturation protein HypF [Chlorobium luteolum DSM 273] Length = 719 Score = 56.6 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 57/155 (36%), Gaps = 16/155 (10%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLIC 62 D AL A L G +AI + L D+ N +A++RL + K R A P Sbjct: 163 DPAAL--AASRLRDGAVVAIKS-----LGGFHLSVDALNDSAVKRLRDGKGREA-KPFAV 214 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 + + V + + +A P+ ++L + + + +P Sbjct: 215 MMPSTATVLHYCDA-CEAELIALQSAEAPI-VLLKKRAGSHLADSVAPGNDRLGVMLPYT 272 Query: 123 FTKKLIETYG-HPLAIPSANRSGQISITNVKHILS 156 KL+ G L + SAN S + +++ L Sbjct: 273 PLHKLLFEQGPEVLVMTSANVSEEPIVSDNDEALH 307 >gi|323698528|ref|ZP_08110440.1| (NiFe) hydrogenase maturation protein HypF [Desulfovibrio sp. ND132] gi|323458460|gb|EGB14325.1| (NiFe) hydrogenase maturation protein HypF [Desulfovibrio desulfuricans ND132] Length = 772 Score = 56.6 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 46/160 (28%), Gaps = 20/160 (12%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 +LR+ L G A V GL D+ + + RL E K RP PL Sbjct: 202 DESLRRLARELADGRIAA-----VKGLGGFHLVCDAGSRRTVARLRERKHRP-DKPLAVM 255 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP--- 120 V D++ ++ A V P+ L + + +P Sbjct: 256 VPDMATARRLALVSQAEEEWLTGIR-RPIVLTAKKRP-FPLARSVAPDTDFVGLMLPYTP 313 Query: 121 -CGFTKKLIETYGHP---LAIPSANRSGQISITNVKHILS 156 P L + S N S + + L Sbjct: 314 LHHILLHDYAELKGPEAALVMTSGNMSAEPICLDNDEALE 353 >gi|148925978|ref|ZP_01809665.1| transcriptional regulatory protein hypF [Campylobacter jejuni subsp. jejuni CG8486] gi|145844964|gb|EDK22068.1| transcriptional regulatory protein hypF [Campylobacter jejuni subsp. jejuni CG8486] Length = 706 Score = 56.6 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 57/167 (34%), Gaps = 18/167 (10%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 D A ++ +FL G +AI G+ D+ N ++ L K RP P Sbjct: 200 DQEAFMQSAKFLKEGKILAIK-----GMGGFHLMCDAFNEEVLKTLRLRKNRP-KKPFAL 253 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 D+ K+ A +D L P+ ++ + + I P + Sbjct: 254 MCKDLQSAKELAFIDEKEEALLGEVL-APIVILKAKKAFSLIAPDV----DKIGIMLAYT 308 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 L E + L SAN SG+ I + L + K +D Sbjct: 309 PLHLLLFEYFKGNLVATSANLSGESIIK-DEFNLRQKLDKVFDFYLD 354 >gi|326924448|ref|XP_003208439.1| PREDICTED: hypothetical protein LOC100545276 [Meleagris gallopavo] Length = 100 Score = 56.6 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 3/85 (3%) Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 RVP + PLAI SAN SG++ T+ ++S + ++ ++ G S + Sbjct: 2 IRVPDLTVLVHLIDMTGPLAITSANPSGEVDSTHHDMVIS-RLGHKLEGVLCDGESDEVV 60 Query: 177 ESTIVNVQ--CEKKVRILRPGGLEI 199 ST+VN E + ILR G + Sbjct: 61 ASTVVNCTRIDESGITILREGCIPA 85 >gi|170765844|ref|ZP_02900655.1| carbamoyltransferase HypF [Escherichia albertii TW07627] gi|170124990|gb|EDS93921.1| carbamoyltransferase HypF [Escherichia albertii TW07627] Length = 766 Score = 56.6 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 43/124 (34%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + + + L P + Sbjct: 242 LACDARNSNAVATLRARKHRPA-KPLAVMLPTAEGL------PEAAFQLLN--TPAAPIV 292 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ L +P L++ PL + S N SG+ + + Sbjct: 293 LVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 352 Query: 154 ILSS 157 L Sbjct: 353 ALED 356 >gi|109946715|ref|YP_663943.1| transcriptional regulatory protein HypF [Helicobacter acinonychis str. Sheeba] gi|109713936|emb|CAJ98944.1| transcriptional regulatory protein HypF [Helicobacter acinonychis str. Sheeba] Length = 750 Score = 56.6 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 37/170 (21%), Positives = 62/170 (36%), Gaps = 22/170 (12%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPL 60 + D +AL + + + G IA+ GL D+RN +I RL +KKRP P Sbjct: 189 LEDYDALLECAKDIQKGKIIALK-----GLGGFALVCDARNFQSIERLRLLKKRPL-KPF 242 Query: 61 ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 D++ K++ ++ L L P L+ T + P N + Sbjct: 243 ALMFKDLNTAKQYVFLNELECESLRSANAP---ILLAHKKPDTKLAPNIAKNSPFYGVIL 299 Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 P L++ P+ SAN + ++ K + I D Sbjct: 300 PYTPLHALLLDLLDFPIVFTSANFNSLPLASDEKEM------DRFHFIFD 343 >gi|58268134|ref|XP_571223.1| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21] gi|134111867|ref|XP_775469.1| hypothetical protein CNBE1840 [Cryptococcus neoformans var. neoformans B-3501A] gi|50258128|gb|EAL20822.1| hypothetical protein CNBE1840 [Cryptococcus neoformans var. neoformans B-3501A] gi|57227457|gb|AAW43916.1| expressed protein [Cryptococcus neoformans var. neoformans JEC21] Length = 256 Score = 56.6 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 65/177 (36%), Gaps = 24/177 (13%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTA-IRRLYEIKKRPAMNPLICHVSDISMVK 71 R+A E L +G I PT+ Y L + A I+R++ K R + I + + Sbjct: 20 REAYETLKSGGVIIAPTDVGYAL---MTSTQAGIQRIFAAKDRRQGHN-IGIIGTYRQHR 75 Query: 72 KHASVDPLSLHLAKLFWP--GPLTLVLDLLSTTDIHPLSTA----------NLKTACFRV 119 + + L ++ G + ++ ++HP A + Sbjct: 76 EIHVLPESKFELTRVLTEDMGMIVGIIAKFDPQNLHPRLAALDRATLSQVTKGDMVSIAI 135 Query: 120 PC-GFTKKLIETY-----GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 P F ++L G + SAN +GQ ++ I + + + L++D G Sbjct: 136 PEGPFLRELGRLCDTDPQGLLMFGTSANLTGQGQRFRIEDIEPAVLAH-VDLVVDYG 191 >gi|270292624|ref|ZP_06198835.1| conserved hypothetical protein [Streptococcus sp. M143] gi|270278603|gb|EFA24449.1| conserved hypothetical protein [Streptococcus sp. M143] Length = 259 Score = 56.6 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 41/224 (18%), Positives = 81/224 (36%), Gaps = 29/224 (12%) Query: 17 EFLD-AGLPIAIPTETVYGLAVDSRNPTA-IRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 + L G I PT+ Y + + A + R +E K+R P + + ++ A Sbjct: 17 DILKGEGGCIVCPTKVGYII---MTSDKAGLERKFEAKERNRNKPGVVLCGSMDELRALA 73 Query: 75 SVDPLSLHLAKLFWPGPLTL--VLDLLS---------TTDIHPLSTANLKTACFRVPCGF 123 ++P + W + L +L L T T+CF + G Sbjct: 74 QLNPEIEAFYQKHWDEDILLGCILPWKPEAFEKLKAYGDGREELMTDVRGTSCFVIKFGK 133 Query: 124 TKKLIET----YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + + G + SAN SG+ + V+ + I + L+I+ + S Sbjct: 134 AGEQLAAKLWEEGKMVYASSANPSGKGNRGKVEG-IGERIEGAVDLVIEADDY---VAS- 188 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSP 223 +Q +K + G+ + + + + E D + +P +P Sbjct: 189 ---IQPDKTIETRYEQGVMVSLVDKDGKLIPEQGGDRSISP-AP 228 >gi|257459578|ref|ZP_05624687.1| HypF finger [Campylobacter gracilis RM3268] gi|257443003|gb|EEV18137.1| HypF finger [Campylobacter gracilis RM3268] Length = 1482 Score = 56.6 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 11/82 (13%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 A+ + E L G AI G+ D+ N A+R L +KKRP+ P Sbjct: 400 EEAIARTAELLWRGQIGAIK-----GMGGFHIVCDATNERAVRMLRTLKKRPS-KPFAIM 453 Query: 64 VSDISMVKKHASVDPLSLHLAK 85 D + + AS+ L Sbjct: 454 CRDAAQAGRAASLSAEEKALID 475 >gi|125717816|ref|YP_001034949.1| hypothetical protein SSA_0983 [Streptococcus sanguinis SK36] gi|125497733|gb|ABN44399.1| Conserved uncharacterized protein [Streptococcus sanguinis SK36] Length = 259 Score = 56.6 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 37/205 (18%), Positives = 72/205 (35%), Gaps = 28/205 (13%) Query: 17 EFLD-AGLPIAIPTETVYGLAVDSRNPTA-IRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 + L G I PT+ Y + + A + R +E K R P + + ++ A Sbjct: 17 DILKGDGGCIVCPTKVGYII---MTSDKAGLERKFEAKSRNRNKPGVVLCGSMDELRALA 73 Query: 75 SVDPLSLHLAKLFWPGPLTL--VLDLLS---------TTDIHPLSTANLKTACFRVPCGF 123 ++P + W + L +L L T T+CF + G Sbjct: 74 QLNPEIEAFYQKHWDEDILLGCILPWKPEAFEKLKAFGDGREELMTDVRGTSCFVIKFGK 133 Query: 124 TKKLIET----YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + + G + SAN SG+ + V+ + I + L+I+ + S Sbjct: 134 AGEQLAAKLWEEGKMVYASSANPSGKGNRGKVEG-IGERIENAVDLVIEADDY---VAS- 188 Query: 180 IVNVQCEKKVRILRPGGLEIETLKR 204 +Q +K + G+ + + + Sbjct: 189 ---IQPDKTIETRYEQGVMVSMVDK 210 >gi|82778081|ref|YP_404430.1| transcriptional regulatory protein [Shigella dysenteriae Sd197] gi|309786206|ref|ZP_07680834.1| hydrogenase maturation protein HypF [Shigella dysenteriae 1617] gi|81242229|gb|ABB62939.1| transcriptional regulatory protein [Shigella dysenteriae Sd197] gi|308925951|gb|EFP71430.1| hydrogenase maturation protein HypF [Shigella dysenteriae 1617] Length = 750 Score = 56.6 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 52/153 (33%), Gaps = 20/153 (13%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 AL+ L G +AI G+ D+RN A+ L K RPA PL + Sbjct: 202 ALQATIAQLKMGNIVAIK-----GIGGFHLACDARNSNAVATLRARKHRPA-KPLAVML- 254 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-T 124 A P + L P +++D +I L +P Sbjct: 255 ------PVADGLPDAARQL-LTTPAAPIVLVDKKYVPEICDDIAPGLNEVGVMLPANPLQ 307 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSS 157 L++ PL + S N SG+ + + L Sbjct: 308 HLLLQELQCPLVMTSGNLSGKPPAISNEQALED 340 >gi|323351751|ref|ZP_08087405.1| translation factor (SUA5) [Streptococcus sanguinis VMC66] gi|322122237|gb|EFX93963.1| translation factor (SUA5) [Streptococcus sanguinis VMC66] Length = 259 Score = 56.2 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 37/205 (18%), Positives = 72/205 (35%), Gaps = 28/205 (13%) Query: 17 EFLD-AGLPIAIPTETVYGLAVDSRNPTA-IRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 + L G I PT+ Y + + A + R +E K R P + + ++ A Sbjct: 17 DILKGDGGCIVCPTKVGYII---MTSDKAGLERKFEAKARNRNKPGVVLCGSMDELRALA 73 Query: 75 SVDPLSLHLAKLFWPGPLTL--VLDLLS---------TTDIHPLSTANLKTACFRVPCGF 123 ++P + W + L +L L T T+CF + G Sbjct: 74 QLNPEIEAFYQKHWDEDILLGCILPWKPEAFEKLKAYGDGREELMTDVRGTSCFVIKFGK 133 Query: 124 TKKLIET----YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + + G + SAN SG+ + V+ + I + L+I+ + S Sbjct: 134 AGEQLAAKLWEEGKMVYASSANPSGKGNRGKVEG-IGERIENAVDLVIEADDY---VAS- 188 Query: 180 IVNVQCEKKVRILRPGGLEIETLKR 204 +Q +K + G+ + + + Sbjct: 189 ---IQPDKTIETRYEQGVMVSMVDK 210 >gi|116198445|ref|XP_001225034.1| hypothetical protein CHGG_07378 [Chaetomium globosum CBS 148.51] gi|88178657|gb|EAQ86125.1| hypothetical protein CHGG_07378 [Chaetomium globosum CBS 148.51] Length = 242 Score = 56.2 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 64/178 (35%), Gaps = 20/178 (11%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S ++ E L +G + +PT+ Y L + P + R++ K R + L + Sbjct: 16 SRDAQQTYETLKSGGVVVVPTDVGYAL--LTSTPAGVERIFTAKGRRQGHNL-GIIGTYQ 72 Query: 69 MVKKHASVDPLSLHLAKLFWPGP---LTLVLDLLSTTD-IHPLSTANL------KTACFR 118 ++ + ++ ++++ T + L A L T Sbjct: 73 QHREIHVLPESKFEFTRVLTEDMGMIISIIAKYDPTNPRLAALGPATLSQVTRGDTIGIA 132 Query: 119 VPC-GFTKKLIETY-----GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 +P F ++L G + SAN +GQ V+ I + + L++D G Sbjct: 133 IPEGPFLRELGRLCDADPQGTLIFGSSANLTGQGQRFRVEDIEPAVLGH-ADLVVDYG 189 >gi|330908743|gb|EGH37257.1| [NiFe] hydrogenase metallocenter assembly protein HypF [Escherichia coli AA86] Length = 766 Score = 56.2 bits (135), Expect = 6e-06, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 46/126 (36%), Gaps = 10/126 (7%) Query: 33 YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPL 92 Y LA D+RN A+ L K RPA PL + A P + L P Sbjct: 240 YHLACDARNSNAVATLRARKHRPA-KPLAVML-------PVADDLPDAARQL-LTTPAAP 290 Query: 93 TLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNV 151 +++D ++ L +P L++ PL + S N SG+ + Sbjct: 291 IVLVDKKYIPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISN 350 Query: 152 KHILSS 157 + L+ Sbjct: 351 EQALAD 356 >gi|331648430|ref|ZP_08349518.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli M605] gi|331042177|gb|EGI14319.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli M605] Length = 774 Score = 56.2 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 45/126 (35%), Gaps = 10/126 (7%) Query: 33 YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPL 92 Y LA D+RN A+ L K RPA PL + + + L P Sbjct: 248 YHLACDARNSNAVATLRARKHRPA-KPLAVMLPVADDL------PDAARQLL--TTPAAP 298 Query: 93 TLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNV 151 +++D ++ L +P L++ PL + S N SG+ + Sbjct: 299 IVLVDKKYIPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISN 358 Query: 152 KHILSS 157 + L+ Sbjct: 359 EQALAD 364 >gi|326566271|gb|EGE16423.1| hypothetical protein E9K_01948 [Moraxella catarrhalis 103P14B1] gi|326574840|gb|EGE24770.1| hypothetical protein E9Y_03956 [Moraxella catarrhalis 101P30B1] gi|326576164|gb|EGE26079.1| hypothetical protein E9W_00895 [Moraxella catarrhalis CO72] Length = 188 Score = 56.2 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 31/192 (16%), Positives = 58/192 (30%), Gaps = 17/192 (8%) Query: 1 MQIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRL-----YEI 51 MQ I N L +A L I P + Y LAV ++ + YE Sbjct: 1 MQKFYIHPDNPQKRVLIQAANLLKNDQLIIYPDPSGYRLAVSLDAKQSLAQALRFGQYEP 60 Query: 52 KKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTAN 111 K IS + A + + K +L+ + ++++ Sbjct: 61 K-------FCLICRHISEISTFAKISDFAHRNLKNTLNKNTHFLLNPTKSAPKKFVNSSG 113 Query: 112 LKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171 LIE P +G+ + + L + + + +D G Sbjct: 114 KNICASLAHTPIVLSLIEALNAPFISMPIYLNGEKVTYDSTYELEAMMENLVDGFLDAGE 173 Query: 172 SKIGLESTIVNV 183 + S +V++ Sbjct: 174 LQD-QPSPVVSL 184 >gi|324990842|gb|EGC22777.1| hypothetical protein HMPREF9388_0874 [Streptococcus sanguinis SK353] gi|324993089|gb|EGC25009.1| hypothetical protein HMPREF9390_0798 [Streptococcus sanguinis SK405] gi|324995605|gb|EGC27517.1| hypothetical protein HMPREF9392_1103 [Streptococcus sanguinis SK678] gi|325687922|gb|EGD29942.1| hypothetical protein HMPREF9381_0821 [Streptococcus sanguinis SK72] gi|325689876|gb|EGD31880.1| hypothetical protein HMPREF9382_0834 [Streptococcus sanguinis SK115] gi|325694281|gb|EGD36195.1| hypothetical protein HMPREF9383_1483 [Streptococcus sanguinis SK150] gi|327459795|gb|EGF06135.1| hypothetical protein HMPREF9394_1490 [Streptococcus sanguinis SK1057] gi|327461355|gb|EGF07686.1| hypothetical protein HMPREF9378_0787 [Streptococcus sanguinis SK1] gi|327469525|gb|EGF14994.1| hypothetical protein HMPREF9386_0838 [Streptococcus sanguinis SK330] gi|327489217|gb|EGF21010.1| hypothetical protein HMPREF9395_1383 [Streptococcus sanguinis SK1058] gi|332360374|gb|EGJ38186.1| hypothetical protein HMPREF9380_1458 [Streptococcus sanguinis SK49] gi|332361438|gb|EGJ39242.1| hypothetical protein HMPREF9393_0864 [Streptococcus sanguinis SK1056] gi|332366544|gb|EGJ44290.1| hypothetical protein HMPREF9396_0897 [Streptococcus sanguinis SK1059] Length = 259 Score = 56.2 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 37/205 (18%), Positives = 72/205 (35%), Gaps = 28/205 (13%) Query: 17 EFLD-AGLPIAIPTETVYGLAVDSRNPTA-IRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 + L G I PT+ Y + + A + R +E K R P + + ++ A Sbjct: 17 DILKGDGGCIVCPTKVGYII---MTSDKAGLERKFEAKARNRNKPGVVLCGSMDELRALA 73 Query: 75 SVDPLSLHLAKLFWPGPLTL--VLDLLS---------TTDIHPLSTANLKTACFRVPCGF 123 ++P + W + L +L L T T+CF + G Sbjct: 74 QLNPEIEAFYQKHWDEDILLGCILPWKPEAFEKLKAFGDGREELMTDVRGTSCFVIKFGK 133 Query: 124 TKKLIET----YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + + G + SAN SG+ + V+ + I + L+I+ + S Sbjct: 134 AGEQLAAKLWEEGKMVYASSANPSGKGNRGKVEG-IGERIENAVDLVIEADDY---VAS- 188 Query: 180 IVNVQCEKKVRILRPGGLEIETLKR 204 +Q +K + G+ + + + Sbjct: 189 ---IQPDKTIETRYEQGVMVSMVDK 210 >gi|239906992|ref|YP_002953733.1| hydrogenase maturation protein HypF [Desulfovibrio magneticus RS-1] gi|239796858|dbj|BAH75847.1| hydrogenase maturation protein HypF [Desulfovibrio magneticus RS-1] Length = 779 Score = 56.2 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 42/131 (32%), Gaps = 12/131 (9%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 L D+ + A+ L K RP+ L V D+ V P + L P+ L Sbjct: 229 LVCDAGDNDAVAELRRRKGRPS-KALAVMVPDLETAALLGEVGPTAAELLGGTA-RPICL 286 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET-------YGHPLAI--PSANRSGQ 145 L + + + P ++ +P ++ P A+ S N G Sbjct: 287 -LPARAGSALAPSVAPDVAEIGVMLPYTPLHHILLADFAAAVGSDRPAALVMTSGNAGGD 345 Query: 146 ISITNVKHILS 156 + L+ Sbjct: 346 PICLGNREALA 356 >gi|325696595|gb|EGD38484.1| translation factor (SUA5) [Streptococcus sanguinis SK160] gi|327473994|gb|EGF19407.1| translation factor (SUA5) [Streptococcus sanguinis SK408] Length = 259 Score = 56.2 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 37/205 (18%), Positives = 72/205 (35%), Gaps = 28/205 (13%) Query: 17 EFLD-AGLPIAIPTETVYGLAVDSRNPTA-IRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 + L G I PT+ Y + + A + R +E K R P + + ++ A Sbjct: 17 DILKGDGGCIVCPTKVGYII---MTSDKAGLERKFEAKARNRNKPGVVLCGSMDELRALA 73 Query: 75 SVDPLSLHLAKLFWPGPLTL--VLDLLS---------TTDIHPLSTANLKTACFRVPCGF 123 ++P + W + L +L L T T+CF + G Sbjct: 74 QLNPEIEAFYQKHWDEDILLGCILPWKPEAFEELKAFGDGREELMTDVRGTSCFVIKFGK 133 Query: 124 TKKLIET----YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + + G + SAN SG+ + V+ + I + L+I+ + S Sbjct: 134 AGEQLAAKLWEEGKMVYASSANPSGKGNRGKVEG-IGDRIENAVDLVIEADDY---VAS- 188 Query: 180 IVNVQCEKKVRILRPGGLEIETLKR 204 +Q +K + G+ + + + Sbjct: 189 ---IQPDKTIETRYEQGVMVSMVDK 210 >gi|320194846|gb|EFW69475.1| NiFe hydrogenase metallocenter assembly protein HypF [Escherichia coli WV_060327] Length = 766 Score = 56.2 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 44/124 (35%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + + + L P + Sbjct: 242 LACDARNSNAVATLRARKHRPA-KPLAVMLPTAEGL------PDAARQLL--TTPAAPIV 292 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ L +P L++ PL + S N SG+ + + Sbjct: 293 LVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 352 Query: 154 ILSS 157 L+ Sbjct: 353 ALAD 356 >gi|323966857|gb|EGB62286.1| hydrogenase maturation protein HypF [Escherichia coli M863] gi|327251431|gb|EGE63117.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli STEC_7v] Length = 750 Score = 55.8 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 43/124 (34%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + + + L P + Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVMLPVTEDL------PDAARQLL--TTPAAPIV 276 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ L +P L++ PL + S N SG+ + + Sbjct: 277 LVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336 Query: 154 ILSS 157 L Sbjct: 337 ALED 340 >gi|312965264|ref|ZP_07779499.1| hydrogenase maturation protein HypF [Escherichia coli 2362-75] gi|312290100|gb|EFR17985.1| hydrogenase maturation protein HypF [Escherichia coli 2362-75] Length = 750 Score = 55.8 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 44/124 (35%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + + + L P + Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVMLPTAEGL------PDAARQLL--TTPAAPIV 276 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ L +P L++ PL + S N SG+ + + Sbjct: 277 LVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336 Query: 154 ILSS 157 L+ Sbjct: 337 ALAD 340 >gi|304437846|ref|ZP_07397794.1| hydrogenase maturation protein HypF [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369146|gb|EFM22823.1| hydrogenase maturation protein HypF [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 781 Score = 55.8 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 58/193 (30%), Gaps = 13/193 (6%) Query: 10 NALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 + L A + G +A V Y LA D+R+ TA+ RL K R A L Sbjct: 216 DPLAAARRVVAEGGILA-----VKGIGGYHLACDARSETAVARLRRRKHREA-KALAVMA 269 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 ++ V+ + L + L + + +P Sbjct: 270 GSLAAVRALCLLSAEEERLLTSPAAPIVLLARRVDAVRPAAESVAPGNAYLGVMLPYAPV 329 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIVNV 183 L+ + SAN SG + + I+ + ++ ++V + Sbjct: 330 HLLLLGADDLWVMTSANLSGDPILYRDAAA-EEGLAGIADAILVHNREIVHRVDDSVVRI 388 Query: 184 QCEKKVRILRPGG 196 + R G Sbjct: 389 GAGGPQILRRSRG 401 >gi|258405427|ref|YP_003198169.1| (NiFe) hydrogenase maturation protein HypF [Desulfohalobium retbaense DSM 5692] gi|257797654|gb|ACV68591.1| (NiFe) hydrogenase maturation protein HypF [Desulfohalobium retbaense DSM 5692] Length = 781 Score = 55.8 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 34/212 (16%), Positives = 69/212 (32%), Gaps = 26/212 (12%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 D L +A +L G +AI GL + + TA+ RL + K R PL Sbjct: 206 DGPVLAEAARWLARGKILAIK-----GLGGFHLACLATSETAVARLRQRKHR-FGKPLAV 259 Query: 63 HVSDISMVKKHASVD-PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120 V D++ + ++ + L+ + P +V + ++T + + +A +P Sbjct: 260 MVPDLASAHRIVRINGAEATWLSGIVRP---IVVCEKKASTLLAGDIAPDTDSAGVMLPY 316 Query: 121 ---CGFTKKLIE-----TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172 + L + S N S + + + Sbjct: 317 TPLHHVLLDELRGLLPQGSVPALVMTSGNLSSEPIALGNREARHRLHSIADGFVFHNRDI 376 Query: 173 KIGLESTIVNVQCE--KKVRILRPGGLEIETL 202 I + ++V + + V R G+ + Sbjct: 377 LIRCDDSVVRIHPDTANPVWYRRARGMTPSPV 408 >gi|157150619|ref|YP_001450207.1| hypothetical protein SGO_0911 [Streptococcus gordonii str. Challis substr. CH1] gi|262282515|ref|ZP_06060283.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA] gi|322385497|ref|ZP_08059141.1| hypothetical protein HMPREF9422_0506 [Streptococcus cristatus ATCC 51100] gi|13507083|gb|AAK28431.1|AF251027_3 unknown [Streptococcus gordonii] gi|13507093|gb|AAK28438.1| unknown [Streptococcus gordonii] gi|157075413|gb|ABV10096.1| conserved hypothetical protein [Streptococcus gordonii str. Challis substr. CH1] gi|262261806|gb|EEY80504.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA] gi|321270235|gb|EFX53151.1| hypothetical protein HMPREF9422_0506 [Streptococcus cristatus ATCC 51100] Length = 259 Score = 55.8 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 37/205 (18%), Positives = 72/205 (35%), Gaps = 28/205 (13%) Query: 17 EFLD-AGLPIAIPTETVYGLAVDSRNPTA-IRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 + L G I PT+ Y + + A + R +E K R P + + ++ A Sbjct: 17 DILKGDGGCIVCPTKVGYII---MTSDKAGLERKFEAKARNRNKPGVVLCGSMDELRALA 73 Query: 75 SVDPLSLHLAKLFWPGPLTL--VLDLLS---------TTDIHPLSTANLKTACFRVPCGF 123 ++P + W + L +L L T T+CF + G Sbjct: 74 QLNPEIEAFYQKHWDEDILLGCILPWKPEAFEKLKAYGDGREELMTDVRGTSCFVIKFGK 133 Query: 124 TKKLIET----YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + + G + SAN SG+ + V+ + I + L+I+ + S Sbjct: 134 AGEQLAAKLWEEGKMVYASSANPSGKGNRGKVEG-IGERIENAVDLVIEADDY---VAS- 188 Query: 180 IVNVQCEKKVRILRPGGLEIETLKR 204 +Q +K + G+ + + + Sbjct: 189 ---IQPDKTIETRYEQGVMVSMVDK 210 >gi|293365567|ref|ZP_06612276.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037] gi|307703521|ref|ZP_07640463.1| hypothetical protein SMSK23_1350 [Streptococcus oralis ATCC 35037] gi|291315935|gb|EFE56379.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037] gi|307622928|gb|EFO01923.1| hypothetical protein SMSK23_1350 [Streptococcus oralis ATCC 35037] Length = 259 Score = 55.8 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 40/224 (17%), Positives = 80/224 (35%), Gaps = 29/224 (12%) Query: 17 EFLD-AGLPIAIPTETVYGLAVDSRNPTA-IRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 E L G I PT+ Y + + A + R +E K+R P + + ++ A Sbjct: 17 EILKGEGGCIVCPTKVGYII---MTSDKAGLERKFEAKERNRNKPGVVLCGSMDELRALA 73 Query: 75 SVDPLSLHLAKLFWPGPLTL--VLDLLS---------TTDIHPLSTANLKTACFRVPCGF 123 ++ + W + L +L L T T+CF + G Sbjct: 74 QLNSEIEAFYQKHWDEDILLGCILPWKPEAFEKLKAYGDGREELMTDVRGTSCFVIKFGK 133 Query: 124 TKKLIET----YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + + G + SAN SG+ + V+ + I + L+I+ + S Sbjct: 134 AGEQLAAKLWEEGKMVYASSANPSGKGNRGKVEG-IGERIEGAVDLVIEADDY---VAS- 188 Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSP 223 +Q +K + G+ + + + + E +++P +P Sbjct: 189 ---IQPDKTIETRYEQGVMVSMVDKDGKLIPEQGGARSTSP-AP 228 >gi|217031790|ref|ZP_03437294.1| hypothetical protein HPB128_155g103 [Helicobacter pylori B128] gi|216946637|gb|EEC25237.1| hypothetical protein HPB128_155g103 [Helicobacter pylori B128] Length = 757 Score = 55.8 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 60/154 (38%), Gaps = 16/154 (10%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 + +AL + + L G IA+ GL D+RN I RL +K RP P + Sbjct: 198 NDDALLECAKDLQKGKIIALK-----GLGGFVLLCDARNFQTIERLRLLKNRPL-KPFVL 251 Query: 63 HVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120 D++ K+HA ++ L L P L++ T + P N +P Sbjct: 252 MFKDLNSAKQHAFLNALECESLNSASAP---ILLVRKKPNTPLAPNIAKNSPFYGVILPY 308 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154 L++ P+ SAN + +N K I Sbjct: 309 TPLHALLLDLLDFPIIFTSANFNSLPLASNEKEI 342 >gi|324111336|gb|EGC05318.1| hydrogenase maturation protein HypF [Escherichia fergusonii B253] Length = 750 Score = 55.8 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 44/124 (35%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + + + L P + Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVMLPTAEGL------PDAARQLL--TTPAAPIV 276 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D + ++ L +P L++ PL + S N SG+ + + Sbjct: 277 LVDKIYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336 Query: 154 ILSS 157 L Sbjct: 337 ALED 340 >gi|298737068|ref|YP_003729598.1| hydrogenase maturation protein HypF [Helicobacter pylori B8] gi|298356262|emb|CBI67134.1| hydrogenase maturation protein HypF [Helicobacter pylori B8] Length = 769 Score = 55.8 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 60/154 (38%), Gaps = 16/154 (10%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 + +AL + + L G IA+ GL D+RN I RL +K RP P + Sbjct: 210 NDDALLECAKDLQKGKIIALK-----GLGGFVLLCDARNFQTIERLRLLKNRPL-KPFVL 263 Query: 63 HVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120 D++ K+HA ++ L L P L++ T + P N +P Sbjct: 264 MFKDLNSAKQHAFLNALECESLNSASAP---ILLVRKKPNTPLAPNIAKNSPFYGVILPY 320 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154 L++ P+ SAN + +N K I Sbjct: 321 TPLHALLLDLLDFPIIFTSANFNSLPLASNEKEI 354 >gi|154149031|ref|YP_001406430.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter hominis ATCC BAA-381] gi|153805040|gb|ABS52047.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter hominis ATCC BAA-381] Length = 1124 Score = 55.8 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 11/81 (13%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 + ++KA E L AG +A V G+ D+ N A++ L E K RP P Sbjct: 198 EDGVKKATELLYAGKIVA-----VKGMGGFHIMADACNFEAVKTLRERKHRP-NKPFAVM 251 Query: 64 VSDISMVKKHASVDPLSLHLA 84 D +M KK A + P + Sbjct: 252 CKDENMAKKIAFISPFESKIL 272 >gi|119356556|ref|YP_911200.1| (NiFe) hydrogenase maturation protein HypF [Chlorobium phaeobacteroides DSM 266] gi|119353905|gb|ABL64776.1| (NiFe) hydrogenase maturation protein HypF [Chlorobium phaeobacteroides DSM 266] Length = 773 Score = 55.8 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 51/134 (38%), Gaps = 5/134 (3%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LAVD+RN A+R L E K R P +SD+ +V++ V+P + L P + Sbjct: 242 LAVDARNDAAVRLLRERKGR-EEKPFAVMMSDMELVRQFCDVEPEEA--SALLSPEAPIV 298 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGH-PLAIPSANRSGQISITNVKH 153 +L S + +P L+ G L + SAN S + + + Sbjct: 299 LLVKRSMKGLSASIAPGNDRLGVMLPYSPLHSLLFDRGADVLLMTSANFSEEPILHENRE 358 Query: 154 ILSSSICKEIPLII 167 + + + Sbjct: 359 AM-ERLGGIADAFL 371 >gi|78043515|ref|YP_360372.1| hydrogenase maturation protein HypF [Carboxydothermus hydrogenoformans Z-2901] gi|77995630|gb|ABB14529.1| hydrogenase maturation protein HypF [Carboxydothermus hydrogenoformans Z-2901] Length = 754 Score = 55.8 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 52/154 (33%), Gaps = 15/154 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 D + K E L G +A+ GL D N + L + K R A P Sbjct: 201 DGEVIHKTQELLKKGFIVALK-----GLGGYHLAADPFNVKTVLLLRQRKHREA-KPFAL 254 Query: 63 HVSDISMVKKHASVDPLSLHLA-KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 V ++++ KKH + L P ++ ++ I + + +P Sbjct: 255 MVKNLTVAKKHVYISKAEEKLLTSNVCP---IVLCRKKKSSKIVKEVSPDNDYLGIMLPY 311 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHIL 155 L+ + L + SAN S + + + Sbjct: 312 TPFHYLLLEHFEALIMTSANLSEEPIVYQDDEVF 345 >gi|301015832|pdb|3L7V|A Chain A, Crystal Structure Of A Hypothetical Protein Smu.1377c From Streptococcus Mutans Ua159 Length = 295 Score = 55.8 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 39/205 (19%), Positives = 73/205 (35%), Gaps = 27/205 (13%) Query: 17 EFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75 E + G I PT+ Y + + + + R +E KKR P + ++ A Sbjct: 51 EIVKGEGGVIVCPTKVGYII--XTSDKKGLERKFEAKKRNRNKPGVVLCGSXEELRALAQ 108 Query: 76 VDPLSLHLAKLFWPGPLTL--VLDLLS---------TTDIHPLSTANLKTACFRVPCGFT 124 + P + W + L +L + L T T+CF + G Sbjct: 109 LTPEIDAFYQKHWDEDILLGCILPWKAEAYEKLKAYGDGREELXTDIRGTSCFVIKFGVA 168 Query: 125 KKLI-----ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + I E G + SAN SG+ + V+ + I + L+I+ + S Sbjct: 169 GEQIAKEXWEKEGRXVYASSANPSGKGNRGKVEG-IGERIESXVDLVIEADDY---VAS- 223 Query: 180 IVNVQCEKKVRILRPGGLEIETLKR 204 +Q +K + G+ + + + Sbjct: 224 ---IQPDKTIETRYEQGVXVSXVDK 245 >gi|238799038|ref|ZP_04642498.1| Carbamoyltransferase hypF [Yersinia mollaretii ATCC 43969] gi|238717135|gb|EEQ08991.1| Carbamoyltransferase hypF [Yersinia mollaretii ATCC 43969] Length = 309 Score = 55.8 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 44/114 (38%), Gaps = 13/114 (11%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICHV 64 +A+ +A + L AG +AI GL D+ + A+ RL + K+RP+ PL + Sbjct: 202 SAVEQAAQALLAGEIVAIK-----GLGGFHLAVDATHAAAVARLRDRKQRPS-KPLAVML 255 Query: 65 SDISMVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 ++ + + D +L P+ LV + + L Sbjct: 256 PNVDWLMRCVKSGDEGALLRLLRSSAAPIVLVAK-QPDSPLCAAVAPQLSEIGV 308 >gi|26249107|ref|NP_755147.1| hydrogenase maturation protein hypF [Escherichia coli CFT073] gi|26109514|gb|AAN81717.1|AE016765_119 Hydrogenase maturation protein hypF [Escherichia coli CFT073] Length = 774 Score = 55.5 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 44/124 (35%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + + + L P + Sbjct: 250 LACDARNSNAVATLRARKHRPA-KPLAVMLPVADDL------PDAARQLL--TTPAAPIV 300 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ L +P L++ PL + S N SG+ + + Sbjct: 301 LVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 360 Query: 154 ILSS 157 L+ Sbjct: 361 ALAD 364 >gi|326562116|gb|EGE12444.1| hypothetical protein E9G_00688 [Moraxella catarrhalis 7169] gi|326565703|gb|EGE15866.1| hypothetical protein E9O_03754 [Moraxella catarrhalis 12P80B1] gi|326567077|gb|EGE17199.1| hypothetical protein E9Q_06999 [Moraxella catarrhalis BC1] Length = 188 Score = 55.5 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 31/192 (16%), Positives = 59/192 (30%), Gaps = 17/192 (8%) Query: 1 MQIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRL-----YEI 51 MQ I N L +A L I P + Y LAV ++ + YE Sbjct: 1 MQKFYIHPDNPQKRVLIQAANLLKNDQLIIYPDPSGYRLAVSLDAKQSLAQALRFGQYEP 60 Query: 52 KKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTAN 111 K IS + A + + K +L+ + +++++ Sbjct: 61 K-------FCLMCRHISEISTFAKISDFAHRNLKNTLNKNTHFLLNPTKSAPKKFVNSSD 113 Query: 112 LKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171 LIE P +G+ + + L + + + +D G Sbjct: 114 KNICASLAHTPIVLSLIEALNAPFISMPIYLNGEKVTYDSTYELEAMMENLVDGFLDAGE 173 Query: 172 SKIGLESTIVNV 183 + S +V++ Sbjct: 174 LQD-QPSPVVSL 184 >gi|315293667|gb|EFU53019.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS 153-1] Length = 763 Score = 55.5 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 44/124 (35%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + + + L P + Sbjct: 239 LACDARNSNAVATLRARKHRPA-KPLAVMLPVADDL------PDAARQLL--TTPAAPIV 289 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ L +P L++ PL + S N SG+ + + Sbjct: 290 LVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 349 Query: 154 ILSS 157 L+ Sbjct: 350 ALAD 353 >gi|227888248|ref|ZP_04006053.1| hydrogenase maturation protein hypF [Escherichia coli 83972] gi|227834517|gb|EEJ44983.1| hydrogenase maturation protein hypF [Escherichia coli 83972] gi|307554686|gb|ADN47461.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli ABU 83972] Length = 750 Score = 55.5 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 45/124 (36%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + A P + L P + Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADDLPDAARQL-LTTPAAPIV 276 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ L +P L++ PL + S N SG+ + + Sbjct: 277 LVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336 Query: 154 ILSS 157 L+ Sbjct: 337 ALAD 340 >gi|302532406|ref|ZP_07284748.1| [NiFe] hydrogenase maturation protein HypF [Streptomyces sp. C] gi|302441301|gb|EFL13117.1| [NiFe] hydrogenase maturation protein HypF [Streptomyces sp. C] Length = 797 Score = 55.5 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 37/203 (18%), Positives = 66/203 (32%), Gaps = 25/203 (12%) Query: 9 SNALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 ++ + +A L G +A V Y LA D+ P A+ L K R P Sbjct: 205 ADPVAEARRLLAEGAVLA-----VKGLGGYHLACDATRPAAVAELRRRKDRG-DKPFALM 258 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTT----DIHPLSTANLKTACFRV 119 ++ V+ A++ P L GP ++ L + + Sbjct: 259 ARSLADVEHLAALGPAERALL----TGPERPIVLLRRRPASAAALAADVAPGSPDLGVML 314 Query: 120 PCGFTKKLIETY-GHP-----LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173 P L+ G P L + S N SG+ +T+ L + Sbjct: 315 PYTPVHHLLMGLPGDPPGPRLLVMTSGNLSGEPIVTDDAEALERLARLADAWLTHDRPIH 374 Query: 174 IGLESTIVNVQCEKKVRILRPGG 196 + + ++V V + + + R G Sbjct: 375 VPCDDSVVRVCDGEPLTVRRSRG 397 >gi|229156869|ref|ZP_04284950.1| Hydrogenase maturation protein [Bacillus cereus ATCC 4342] gi|228626359|gb|EEK83105.1| Hydrogenase maturation protein [Bacillus cereus ATCC 4342] Length = 776 Score = 55.5 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 51/166 (30%), Gaps = 17/166 (10%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICH 63 N + K + L G +AI GL D N A++ L + KKR P Sbjct: 207 DNPIEKTIDLLKKGKILAIK-----GLGGYHLVVDPMNHEAVKELRKRKKRDE-KPFALM 260 Query: 64 VSDISMVKKHASVD-PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 S + VK A + + L P ++L+ I N T + Sbjct: 261 SSQLDDVKNFAKITKNEEVLLVSKERP---IVLLNKKDNQFISLDVAPNNNTYGVMLAYT 317 Query: 123 FTKKLIETYGH-PLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 LI L SAN S + + + + + Sbjct: 318 PLHHLILRGNFIALIATSANVSDEPIVYKDGDAI-EQLKGIADYYL 362 >gi|11498962|ref|NP_070195.1| hydrogenase expression/formation regulatory protein (hypF) [Archaeoglobus fulgidus DSM 4304] gi|2649204|gb|AAB89876.1| hydrogenase expression/formation regulatory protein (hypF) [Archaeoglobus fulgidus DSM 4304] Length = 740 Score = 55.5 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 40/206 (19%), Positives = 73/206 (35%), Gaps = 22/206 (10%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 + A LD+G IAI G+ + RL ++ RP P V Sbjct: 189 EGGIGDAANALDSGKIIAIK-----GIGGYHIACLTEDDVVLRLRKLLNRPQ-QPFAVMV 242 Query: 65 SDISMVKKHASVDPLSLHLAKLFWP-GPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 D+S ++ A + A+L P P+ +V L + P L T +P Sbjct: 243 RDLSSAERVAELSNE--ERAELLSPARPIVVVRKKLPFEAVAP----ELDTIGIMLPYTP 296 Query: 124 TKKLI--ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 L+ E L + SAN G+ + + + + ++ ++ ++V Sbjct: 297 LHHLLFQELKADYLVMTSANLPGEPMYIDESIMEKMELDGFLVHNLE---IANRVDDSVV 353 Query: 182 NVQCEKKVRILRPGGLEIETLKRAIS 207 +++ I R G + +K I Sbjct: 354 KYVGGRRLLIRRSRGFVPQPIKIDIG 379 >gi|332361873|gb|EGJ39676.1| hypothetical protein HMPREF9389_1534 [Streptococcus sanguinis SK355] Length = 259 Score = 55.5 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 37/205 (18%), Positives = 72/205 (35%), Gaps = 28/205 (13%) Query: 17 EFLD-AGLPIAIPTETVYGLAVDSRNPTA-IRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 + L G I PT+ Y + + A + R +E K R P + + ++ A Sbjct: 17 DILKGDGGCIVCPTKVGYII---MTSDRAGLERKFEAKARNRNKPGVVLCGSMDELRALA 73 Query: 75 SVDPLSLHLAKLFWPGPLTL--VLDLLS---------TTDIHPLSTANLKTACFRVPCGF 123 ++P + W + L +L L T T+CF + G Sbjct: 74 QLNPEIEAFYQKHWDEDILLGCILPWKPEAFEKLKAFGDGREELMTDVRGTSCFVIKFGK 133 Query: 124 TKKLIET----YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + + G + SAN SG+ + V+ + I + L+I+ + S Sbjct: 134 AGEQLAAKLWEEGKMVYASSANPSGKGNRGKVEG-IGERIENAVDLVIEADDY---VAS- 188 Query: 180 IVNVQCEKKVRILRPGGLEIETLKR 204 +Q +K + G+ + + + Sbjct: 189 ---IQPDKTIETRYEQGVMVSMVDK 210 >gi|323978680|gb|EGB73762.1| hydrogenase maturation protein HypF [Escherichia coli TW10509] Length = 750 Score = 55.5 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 44/124 (35%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + + + L P + Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVMLPTAEGL------PNAARQLL--TTPAAPIV 276 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D + ++ L +P L++ PL + S N SG+ + + Sbjct: 277 LVDKIYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336 Query: 154 ILSS 157 L Sbjct: 337 ALED 340 >gi|317489374|ref|ZP_07947887.1| hydrogenase maturation protein HypF [Eggerthella sp. 1_3_56FAA] gi|316911545|gb|EFV33141.1| hydrogenase maturation protein HypF [Eggerthella sp. 1_3_56FAA] Length = 920 Score = 55.5 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 63/178 (35%), Gaps = 20/178 (11%) Query: 5 SITDSNAL-RKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMN 58 + +S+A+ +A E L AG +A V GL D+ NP A+ L +KR Sbjct: 255 TCEESDAILARAVELLLAGKILA-----VKGLGGFHLVCDASNPEAVA-LLRARKRREGK 308 Query: 59 PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 ++D+ V+ + + P+ ++L P L Sbjct: 309 AFAVMMADMEAVRAYCEAGEAEEGILTA-TQRPI-VLLRKRPDAVFAPGLADALPELGVM 366 Query: 119 VPCGFTKKLI-----ETYGHPLAIPSANRSGQISITNVKH-ILSSSICKEIPLIIDGG 170 +P + L+ + G G + T V +++S + P++ID Sbjct: 367 LPYTPLQHLLLHDFAKASGCAERSSQREAEGSRAATAVPMLVMTSGNIHDEPIVIDDE 424 >gi|312862808|ref|ZP_07723048.1| conserved hypothetical protein [Streptococcus vestibularis F0396] gi|322516650|ref|ZP_08069563.1| translation factor (SUA5) [Streptococcus vestibularis ATCC 49124] gi|311101668|gb|EFQ59871.1| conserved hypothetical protein [Streptococcus vestibularis F0396] gi|322124815|gb|EFX96242.1| translation factor (SUA5) [Streptococcus vestibularis ATCC 49124] Length = 261 Score = 55.5 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 43/213 (20%), Positives = 76/213 (35%), Gaps = 29/213 (13%) Query: 8 DSNALRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTA-IRRLYEIKKRPAMNPLICHVS 65 D N ++ E L G I PT+ Y + + A + R +E K+R P + Sbjct: 8 DGNLNQEGFEILKGEGGCIVTPTKVGYII---MTSDKAGLERKFEAKERNRNKPGVVLCG 64 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTL--VLDLLSTT---------DIHPLSTANLKT 114 + ++ A + P + W + L +L L T T Sbjct: 65 SMDELRALAQLTPEIDAFYQKHWDEDILLGCILPWREDAYAKLQAFGDGREELMTDVRGT 124 Query: 115 ACFRVPCGFTKKLI-----ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169 +CF + G + I E G + SAN SG+ + V+ + I + L+I+ Sbjct: 125 SCFVIKFGKAGEQIAKEMWEKEGKMVYASSANPSGKGNRGKVEG-IGERIENAVDLVIEA 183 Query: 170 GISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202 + S +Q +K V G+ + + Sbjct: 184 DEY---VAS----IQPDKTVETRYEQGVMVSMV 209 >gi|218547780|ref|YP_002381571.1| carbamoyl phosphate phosphatase [Escherichia fergusonii ATCC 35469] gi|218355321|emb|CAQ87928.1| carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases [Escherichia fergusonii ATCC 35469] Length = 750 Score = 55.5 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 45/124 (36%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN +A+ L K RPA PL + + + L P + Sbjct: 226 LACDARNSSAVATLRARKHRPA-KPLAVMLPTAEGL------PDAARQLL--TTPAAPIV 276 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D + ++ L +P L++ PL + S N SG+ + + Sbjct: 277 LVDKIYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336 Query: 154 ILSS 157 L Sbjct: 337 ALED 340 >gi|257789917|ref|YP_003180523.1| (NiFe) hydrogenase maturation protein HypF [Eggerthella lenta DSM 2243] gi|325832630|ref|ZP_08165428.1| carbamoyltransferase HypF [Eggerthella sp. HGA1] gi|257473814|gb|ACV54134.1| (NiFe) hydrogenase maturation protein HypF [Eggerthella lenta DSM 2243] gi|325485951|gb|EGC88411.1| carbamoyltransferase HypF [Eggerthella sp. HGA1] Length = 920 Score = 55.5 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 58/170 (34%), Gaps = 19/170 (11%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 L +A E L AG +A V GL D+ NP A+ L +KR ++D Sbjct: 263 LARAVELLLAGKILA-----VKGLGGFHLVCDASNPEAVA-LLRARKRREGKAFAVMMAD 316 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126 + V+ + + P+ ++L P L +P + Sbjct: 317 MEAVRAYCEAGEAEEGILTA-TQRPI-VLLRKRPDAVFAPGLADALPELGVMLPYTPLQH 374 Query: 127 LI-----ETYGHPLAIPSANRSGQISITNVKH-ILSSSICKEIPLIIDGG 170 L+ + G G + T V +++S + P++ID Sbjct: 375 LLLHDFAKASGCAERSSQREAEGSRAATAVPMLVMTSGNIHDEPIVIDDE 424 >gi|312877209|ref|ZP_07737178.1| (NiFe) hydrogenase maturation protein HypF [Caldicellulosiruptor lactoaceticus 6A] gi|311796018|gb|EFR12378.1| (NiFe) hydrogenase maturation protein HypF [Caldicellulosiruptor lactoaceticus 6A] Length = 755 Score = 55.5 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 37/168 (22%), Positives = 61/168 (36%), Gaps = 25/168 (14%) Query: 14 KACEFLD-------AGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLI 61 +A E LD G +AI G+ D N ++RL+E K+R PL Sbjct: 199 EAIELLDFVSQKILEGYIVAIK-----GIGGFHLVCDPYNEIVVKRLFESKRR-EGKPLA 252 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF-RVP 120 DI +VKK+ V+ + + + P ++ T+ +NL T R Sbjct: 253 LVARDIEVVKKYCHVN----KMEEDIFSSPRCPIILFEKKTEHFSHVNSNLHTLGIMRAY 308 Query: 121 CGFTKKLIETYGH-PLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 ++ G L SAN SG I + + + ++ Sbjct: 309 TPILDYILSKTGRDFLIATSANLSGIPMIIDESDAI-QKLDGTCDYVL 355 >gi|312793277|ref|YP_004026200.1| (nife) hydrogenase maturation protein hypf [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180417|gb|ADQ40587.1| (NiFe) hydrogenase maturation protein HypF [Caldicellulosiruptor kristjanssonii 177R1B] Length = 755 Score = 55.5 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 37/168 (22%), Positives = 61/168 (36%), Gaps = 25/168 (14%) Query: 14 KACEFLD-------AGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLI 61 +A E LD G +AI G+ D N ++RL+E K+R PL Sbjct: 199 EAIELLDFVSQKILEGYIVAIK-----GIGGFHLVCDPYNEIVVKRLFESKRR-EGKPLA 252 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF-RVP 120 DI +VKK+ V+ + + + P ++ T+ +NL T R Sbjct: 253 LVARDIEVVKKYCHVN----KMEEDIFSSPRCPIILFEKKTEHFSHVNSNLHTLGIMRAY 308 Query: 121 CGFTKKLIETYGH-PLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 ++ G L SAN SG I + + + ++ Sbjct: 309 TPILDYILSKTGRDFLIATSANLSGIPMIIDESDAI-QKLDGTCDYVL 355 >gi|260060790|ref|YP_003193870.1| transcriptional regulatory protein HypF [Robiginitalea biformata HTCC2501] gi|88784920|gb|EAR16089.1| transcriptional regulatory protein; HypF [Robiginitalea biformata HTCC2501] Length = 577 Score = 55.5 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 57/154 (37%), Gaps = 14/154 (9%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 A+ K F + G IAI G+ D+ NP AI+ L + K RP+ P C Sbjct: 18 AIDKIIRFWEEGKIIAIK-----GIGGYLLTCDATNPKAIQTLRKRKHRPS-KPFACMYP 71 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIH-PLSTANLKTACF-RVPCGF 123 +I+ +++ VD + P+ L+ + DI L Sbjct: 72 NINKIEQDCYVDSTEQQMLTGE-VAPILLLQLRKKSVDIALSDIAPGLNQIGVMLPYTPL 130 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSS 157 L++ +G P+ S N S + K I S Sbjct: 131 YLLLMQAFGKPIVATSGNLSNASIVFEDKKIFSE 164 >gi|317178083|dbj|BAJ55872.1| transcriptional regulator [Helicobacter pylori F16] Length = 750 Score = 55.5 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 35/153 (22%), Positives = 58/153 (37%), Gaps = 14/153 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 + +AL + + + G IA+ GL D+RN I RL +K RP P Sbjct: 191 NDDALLECAKDIQKGKIIALK-----GLGGFALLCDARNFQTIERLRLLKNRPL-KPFAL 244 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 D++ K+HA ++ L P+ L++ T + P N +P Sbjct: 245 MFKDLNTAKQHAFLNALECESLNS-TSAPI-LLVRKKPNTPLAPNIAKNSPFYGVILPYT 302 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154 L++ P+ SAN S ++ I Sbjct: 303 PLHALLLDLLDFPIVFTSANFSSLPLASDEAEI 335 >gi|301049534|ref|ZP_07196491.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS 185-1] gi|300298687|gb|EFJ55072.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS 185-1] Length = 628 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 44/124 (35%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + + + L P + Sbjct: 243 LACDARNSNAVATLRARKHRPA-KPLAVMLPVADDL------PDAARQLL--TTPAAPIV 293 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ L +P L++ PL + S N SG+ + + Sbjct: 294 LVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 353 Query: 154 ILSS 157 L+ Sbjct: 354 ALAD 357 >gi|296113771|ref|YP_003627709.1| hypothetical protein MCR_1559 [Moraxella catarrhalis RH4] gi|295921465|gb|ADG61816.1| hypothetical protein MCR_1559 [Moraxella catarrhalis RH4] gi|326564519|gb|EGE14745.1| hypothetical protein E9M_01553 [Moraxella catarrhalis 46P47B1] gi|326568341|gb|EGE18421.1| hypothetical protein E9S_08214 [Moraxella catarrhalis BC7] gi|326572242|gb|EGE22237.1| hypothetical protein E9U_00671 [Moraxella catarrhalis BC8] gi|326574584|gb|EGE24524.1| hypothetical protein EA1_07412 [Moraxella catarrhalis O35E] Length = 188 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 31/192 (16%), Positives = 59/192 (30%), Gaps = 17/192 (8%) Query: 1 MQIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRL-----YEI 51 MQ I N L +A L I P + Y LAV ++ + YE Sbjct: 1 MQKFYIHPDNPQKRVLIQAANLLKNDQLIIYPDPSGYRLAVSLDAKQSLAQALRFGQYEP 60 Query: 52 KKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTAN 111 K IS + A + + K +L+ + +++++ Sbjct: 61 K-------FCLICRHISEISTFAKISDFAHRNLKNTLNKNTHFLLNPTKSAPKKFVNSSD 113 Query: 112 LKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171 LIE P +G+ + + L + + + +D G Sbjct: 114 KNICASLAHTPIVLSLIEALNAPFISMPIYLNGEKVTYDSTYELEAMMENLVDGFLDAGE 173 Query: 172 SKIGLESTIVNV 183 + S +V++ Sbjct: 174 LQD-QPSPVVSL 184 >gi|228946891|ref|ZP_04109189.1| Hydrogenase maturation protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229122801|ref|ZP_04252010.1| Hydrogenase maturation protein [Bacillus cereus 95/8201] gi|228660665|gb|EEL16296.1| Hydrogenase maturation protein [Bacillus cereus 95/8201] gi|228812761|gb|EEM59084.1| Hydrogenase maturation protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 581 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 56/176 (31%), Gaps = 18/176 (10%) Query: 1 MQIMSITD---SNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIK 52 M+ T+ N + K + L G +AI GL D N A++ L + K Sbjct: 1 MKTTDGTNVSTDNPIEKTIDLLKKGKILAIK-----GLGGYHLVVDPMNHEAVKELRKRK 55 Query: 53 KRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANL 112 KR P S + VK A + L + P+ ++L+ I + Sbjct: 56 KRDE-KPFALMSSQLDDVKNFAEITKNEETLL-VSKERPI-VLLNKKDNEYISSDVAPSN 112 Query: 113 KTACFRVPCGFTKKLIETYGHP-LAIPSANRSGQISITNVKHILSSSICKEIPLII 167 T + LI L SAN S + + + + + Sbjct: 113 NTYGVMLAYTPLHHLILRGNFISLIATSANVSDEPIVYKDGDAI-EQLKGIADYYL 167 >gi|319940465|ref|ZP_08014810.1| hypothetical protein HMPREF9464_00029 [Sutterella wadsworthensis 3_1_45B] gi|319806091|gb|EFW02840.1| hypothetical protein HMPREF9464_00029 [Sutterella wadsworthensis 3_1_45B] Length = 863 Score = 55.1 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 39/246 (15%), Positives = 76/246 (30%), Gaps = 66/246 (26%) Query: 21 AGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75 G +A V G+ D+RNP A+ RL K R PL ++ +++ Sbjct: 240 RGEIVA-----VKGIGGFHLVCDARNPLAVERLRARKGRGE-KPLAVMAANTQSIREFVH 293 Query: 76 VDPLSLHLAKLFWPGPLTLVLDLLSTTDIH-------PLSTANLKTACFRVPCGFTKKLI 128 V + P ++L+ + + + P + +P L+ Sbjct: 294 VSAAEEKML--LSPAHPIVLLERIESDEDPTKPRLELPGIADGVSELGVMLPYTPLHALL 351 Query: 129 ETY--GHP--------------LAIPSANRSGQISITNVKHI------LSSSI---CKEI 163 G P L + SAN G+ + + ++ +EI Sbjct: 352 FHALEGEPAEADWFEKRLCPSLLVMTSANPGGEPLVIDNDEAVLRLGQIADKFLMHNREI 411 Query: 164 PLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSP 223 + D ++V + + + R G+ E ++ + P +P Sbjct: 412 LIRCDD---------SVVRFVNDLPLWVRRGRGVTPEAVQI------------QAVPAAP 450 Query: 224 GMLKSH 229 G H Sbjct: 451 GCRAPH 456 >gi|318041116|ref|ZP_07973072.1| (NiFe) hydrogenase maturation protein HypF [Synechococcus sp. CB0101] Length = 784 Score = 55.1 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 51/130 (39%), Gaps = 14/130 (10%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 L VD + A+++L + K RP PL + + +++H + L W GP Sbjct: 230 LLVDPTHAAAVQQLRQRKGRPE-KPLALLANS-AWMERHCHCNAGEREL----WLGPAAP 283 Query: 95 VLDLLSTTDIHPLSTANLKTA----CFRVPCGFTKK-LIETYGHPLAIPSANRSGQISIT 149 ++ L D P A + PC + L+E G L SANRSG+ Sbjct: 284 IVLLRRNADQPPAFAAGVAGITPWLGVMRPCSGLQHLLLEACGGVLVATSANRSGEPLCA 343 Query: 150 N---VKHILS 156 + +L Sbjct: 344 DGVADADVLR 353 >gi|254778780|ref|YP_003056885.1| Hydrogenase maturation protein HypF [Helicobacter pylori B38] gi|254000691|emb|CAX28600.1| Hydrogenase maturation protein HypF [Helicobacter pylori B38] Length = 757 Score = 55.1 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 57/154 (37%), Gaps = 16/154 (10%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 + +AL + + + G IA+ GL D+RN I RL +K RP P Sbjct: 198 NDDALLECAKDIQKGKIIALK-----GLGGFALLCDARNFQTIERLRLLKNRPL-KPFAL 251 Query: 63 HVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120 D++ K+HA ++ L L P L+ T + P N +P Sbjct: 252 MFKDLNAAKQHAFLNALECESLISTSAP---ILLARKKPDTQLAPNIAKNSPFYGVILPY 308 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154 L++ P+ SAN S ++ I Sbjct: 309 TPLHALLLDLLDFPIVFTSANFSSLPLASDEAEI 342 >gi|54298475|ref|YP_124844.1| hydrogenase maturation protein HypF [Legionella pneumophila str. Paris] gi|53752260|emb|CAH13692.1| Hydrogenase maturation protein HypF [Legionella pneumophila str. Paris] Length = 741 Score = 55.1 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 73/224 (32%), Gaps = 31/224 (13%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 ++ K + + G IA+ GL D+RN AI +L K R A P V Sbjct: 189 SVDKVAQRIRDGEIIALK-----GLGGYQLICDARNEGAISQLRLRKSREA-KPFALMVV 242 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125 + +K A V P + L P +VL + L +P Sbjct: 243 NAKSAEKIAEVSPQA-RLVLESRERP--IVLLRKKKALLPDGIAPGLNHFGIMLPSTPLH 299 Query: 126 KLI--ETYGHP-------------LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 L+ G+P L + SAN + I + K I +I Sbjct: 300 YLLFNSFLGNPDYCQWLDEYHSMVLVVTSANIGSEPLIIDDKKAEQGLISIADKIISHDR 359 Query: 171 ISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV 214 + ++V + + V I R G L+ + E+ V Sbjct: 360 EIITRTDDSVVRMINDTSVLIRRARGYVPAPLR--LPYEIPPTV 401 >gi|330998862|ref|ZP_08322589.1| carbamoyltransferase HypF [Parasutterella excrementihominis YIT 11859] gi|329576076|gb|EGG57595.1| carbamoyltransferase HypF [Parasutterella excrementihominis YIT 11859] Length = 768 Score = 55.1 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 30/180 (16%), Positives = 52/180 (28%), Gaps = 30/180 (16%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 + + + + G A V GL D+ N A+ L + K RP P Sbjct: 202 EDEIAELLRQIQDGKIAA-----VKGLGGFHLVCDAGNAAAVSELRQRKHRP-FKPFAVM 255 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPG-PLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 + + + + +L P P+ L + P L +P Sbjct: 256 ALNDLSASRFVRISEKASK--ELHSPQAPIVLCPKTEDADRLLPGIAPELNRIGVMMPYT 313 Query: 123 FTKKLI--ETYGHP-------------LAIPSANRSGQISITNVKHILSSSICKEIPLII 167 L+ E G P L + SAN G+ + + + L + Sbjct: 314 PIHWLLFFEAMGRPEDPDWYKKECDLVLVMTSANAGGEPLVIGNDEAV-QKLDGIADLFL 372 >gi|303256889|ref|ZP_07342903.1| [NiFe] hydrogenase maturation protein HypF [Burkholderiales bacterium 1_1_47] gi|302860380|gb|EFL83457.1| [NiFe] hydrogenase maturation protein HypF [Burkholderiales bacterium 1_1_47] Length = 768 Score = 55.1 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 30/180 (16%), Positives = 52/180 (28%), Gaps = 30/180 (16%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 + + + + G A V GL D+ N A+ L + K RP P Sbjct: 202 EDEIAELLRQIQDGKIAA-----VKGLGGFHLVCDAGNAAAVSELRQRKHRP-FKPFAVM 255 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPG-PLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 + + + + +L P P+ L + P L +P Sbjct: 256 ALNDLSASRFVRISEKASK--ELHSPQAPIVLCPKTEDADRLLPGIAPELNRIGVMMPYT 313 Query: 123 FTKKLI--ETYGHP-------------LAIPSANRSGQISITNVKHILSSSICKEIPLII 167 L+ E G P L + SAN G+ + + + L + Sbjct: 314 PIHWLLFFEAMGRPEDPDWYKKECDLVLVMTSANAGGEPLVIGNDEAV-QKLDGIADLFL 372 >gi|296171548|ref|ZP_06852812.1| hydrogenase maturation protein HypF [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894110|gb|EFG73871.1| hydrogenase maturation protein HypF [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 787 Score = 55.1 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 45/144 (31%), Gaps = 12/144 (8%) Query: 33 YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPL 92 Y LA + A+ L K R A P V D+ + +++A VD + P Sbjct: 240 YHLACSVGDAGAVAALRARKARGA-KPFAMLVRDLKIARRYAHVDDTEAAVLLG--PARP 296 Query: 93 TLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYG----HPL----AIPSANRSG 144 ++L + +P L+ P+ + SANRS Sbjct: 297 IVLLRRRPHAPVAHAVAPGSPLLGLMLPYSPIHHLLLAPVPGHAGPVPDALVLTSANRSD 356 Query: 145 QISITNVKHILSSSICKEIPLIID 168 + L + ++D Sbjct: 357 EPICFTDDDAL-QRLPALCDAVLD 379 >gi|89255851|ref|YP_513213.1| transposase [Francisella tularensis subsp. holarctica LVS] gi|167010075|ref|ZP_02275006.1| transposase [Francisella tularensis subsp. holarctica FSC200] gi|89143682|emb|CAJ78881.1| Transposase [Francisella tularensis subsp. holarctica LVS] Length = 299 Score = 54.7 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 42/109 (38%), Gaps = 3/109 (2%) Query: 93 TLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET-YGHPLAIPSANRSGQISITNV 151 T + L + L T + T RV + + I G PL I S G + Sbjct: 192 TFIWLLRNYFCAQNLVTKSKNTVGIRVSEHYVPRAISAEIGEPLVISSFIVPGHQHVVTD 251 Query: 152 KHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200 + S I + +++ L +T+V + E +ILR G EI+ Sbjct: 252 CDEVDSQIMNYLDAVVESDYCGYDL-TTVVELL-ELPYQILRQGAGEID 298 >gi|55821208|ref|YP_139650.1| hypothetical protein stu1199 [Streptococcus thermophilus LMG 18311] gi|55823118|ref|YP_141559.1| hypothetical protein str1199 [Streptococcus thermophilus CNRZ1066] gi|116627934|ref|YP_820553.1| hypothetical protein STER_1166 [Streptococcus thermophilus LMD-9] gi|55737193|gb|AAV60835.1| conserved hypothetical protein [Streptococcus thermophilus LMG 18311] gi|55739103|gb|AAV62744.1| conserved hypothetical protein [Streptococcus thermophilus CNRZ1066] gi|116101211|gb|ABJ66357.1| Putative translation factor (SUA5) [Streptococcus thermophilus LMD-9] gi|312278520|gb|ADQ63177.1| Putative translation factor (SUA5) [Streptococcus thermophilus ND03] Length = 261 Score = 54.7 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 43/213 (20%), Positives = 77/213 (36%), Gaps = 29/213 (13%) Query: 8 DSNALRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTA-IRRLYEIKKRPAMNPLICHVS 65 D N ++ E L G I PT+ Y + + A + R +E K+R P + Sbjct: 8 DGNLNQEGFEILKGEGGCIVTPTKVGYII---MTSDKAGLERKFEAKERNRNKPGVVLCG 64 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTL--VLDLLSTT---------DIHPLSTANLKT 114 + ++ A + P + W + L +L L T T Sbjct: 65 SMDELRALAQLTPEIDAFYQKHWDEDILLGCILPWREDAYAKLQAFGDGREELMTDARGT 124 Query: 115 ACFRVPCG-----FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169 +CF + G K++ E G + SAN SG+ + V+ + I + L+I+ Sbjct: 125 SCFVIKFGKPGEQIAKEMWEKEGKMVYASSANPSGKGNRGKVEG-IGERIENAVDLVIEA 183 Query: 170 GISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202 + S +Q +K V G+ + + Sbjct: 184 DEY---VAS----IQPDKTVETRYEQGVMVSMV 209 >gi|303245344|ref|ZP_07331628.1| (NiFe) hydrogenase maturation protein HypF [Desulfovibrio fructosovorans JJ] gi|302493193|gb|EFL53055.1| (NiFe) hydrogenase maturation protein HypF [Desulfovibrio fructosovorans JJ] Length = 779 Score = 54.7 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 50/160 (31%), Gaps = 22/160 (13%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 A+++ L G A V GL D+ N +R L K RP+ L V Sbjct: 205 AIKRLARALADGAIAA-----VKGLGGFHLLCDATNDATVRELRRRKHRPS-KALAIMVP 258 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP----C 121 + K +V P + L P+TLV + + + P + +P Sbjct: 259 HLDAAKCIGAVGPRAEKLLTGTA-RPITLV-PVRPESGLSPAIAPDTAEIGIMLPYTPLH 316 Query: 122 GFTKKLIETYGHP-----LAIPSANRSGQISITNVKHILS 156 P L S N G+ + LS Sbjct: 317 HILLGDYAAAIGPERPAALVATSGNAGGEPISLGNREALS 356 >gi|269216438|ref|ZP_06160292.1| [NiFe] hydrogenase maturation protein HypF [Slackia exigua ATCC 700122] gi|269129967|gb|EEZ61049.1| [NiFe] hydrogenase maturation protein HypF [Slackia exigua ATCC 700122] Length = 820 Score = 54.7 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 34/199 (17%), Positives = 67/199 (33%), Gaps = 29/199 (14%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 + +AC +L G +A V GL D+ NP + L K+R Sbjct: 237 IERACSWLHDGRILA-----VKGLGGFHLVCDAANPETLAELRTRKRR-EGKAFAVMAPS 290 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126 + V+ +V P L P ++L +L +P + Sbjct: 291 LDAVRACCAVSPEEERLL--VSPAHPIVLLKKKPGAVFAAGLADDLSELGVMLPYTPLQH 348 Query: 127 L-IETYGHPLAIPSANRSGQISITNVKHI------LSSSI---CKEIPLIIDGGISKIGL 176 L + +G L + S N + T+ + ++ + + I D +++ Sbjct: 349 LMLAEFGSMLVMTSGNVHDEPIQTDDEAAWKALAGIADAFVGNDRAIETRFDDSVAR--- 405 Query: 177 ESTIVNVQCEKKVRILRPG 195 I+ V + V+++R Sbjct: 406 ---IIRVGGDAAVQLIRRA 421 >gi|254173266|ref|ZP_04879939.1| (NiFe) hydrogenase maturation protein HypF [Thermococcus sp. AM4] gi|214032675|gb|EEB73504.1| (NiFe) hydrogenase maturation protein HypF [Thermococcus sp. AM4] Length = 772 Score = 54.7 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 50/157 (31%), Gaps = 19/157 (12%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKK--RPAMNPLIC 62 + LRKA E +D G +AI G+ D+ + L K+ RP P Sbjct: 201 DPLRKAAELIDRGYIVAIK-----GIGGIHLACDATREDVVAELR--KRTFRPQ-KPFAI 252 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 + VK A V + P+ + L + L T +P Sbjct: 253 MADSLETVKSFAYVSEEEEEELTSYR-RPI-VTLRKREPFPLPENLAPGLHTIGVMLPYA 310 Query: 123 FTKKLIETY--GHPLAIPSANRSGQISITNVKHILSS 157 T ++ + + SAN G + + + Sbjct: 311 GTHYILFHWSKTKVYVMTSANYPGMPMVKDNERAFEE 347 >gi|332999449|gb|EGK19034.1| [NiFe] hydrogenase maturation protein HypF [Shigella flexneri VA-6] Length = 750 Score = 54.7 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 45/124 (36%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L E K RPA PL + + + L P + Sbjct: 226 LACDARNSNAVATLRERKHRPA-KPLAVMLPVAESL------PDAARQLL--TTPAAPIV 276 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ L +P L++ PL + S N SG+ + + Sbjct: 277 LVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336 Query: 154 ILSS 157 L+ Sbjct: 337 ALAD 340 >gi|30064071|ref|NP_838242.1| transcriptional regulatory protein [Shigella flexneri 2a str. 2457T] gi|56480168|ref|NP_708519.2| transcriptional regulatory protein [Shigella flexneri 2a str. 301] gi|110806663|ref|YP_690183.1| transcriptional regulatory protein [Shigella flexneri 5 str. 8401] gi|30042327|gb|AAP18052.1| transcriptional regulatory protein [Shigella flexneri 2a str. 2457T] gi|56383719|gb|AAN44226.2| transcriptional regulatory protein [Shigella flexneri 2a str. 301] gi|110616211|gb|ABF04878.1| transcriptional regulatory protein [Shigella flexneri 5 str. 8401] gi|281602081|gb|ADA75065.1| putative hydrogenase maturation factor [Shigella flexneri 2002017] gi|313648192|gb|EFS12637.1| [NiFe] hydrogenase maturation protein HypF [Shigella flexneri 2a str. 2457T] gi|332755712|gb|EGJ86075.1| [NiFe] hydrogenase maturation protein HypF [Shigella flexneri 2747-71] gi|332765663|gb|EGJ95876.1| [NiFe] hydrogenase maturation protein HypF [Shigella flexneri 2930-71] gi|333000625|gb|EGK20202.1| [NiFe] hydrogenase maturation protein HypF [Shigella flexneri K-218] gi|333015872|gb|EGK35208.1| [NiFe] hydrogenase maturation protein HypF [Shigella flexneri K-304] Length = 750 Score = 54.7 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 45/124 (36%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L E K RPA PL + + + L P + Sbjct: 226 LACDARNSNAVATLRERKHRPA-KPLAVMLPVAESL------PDAARQLL--TTPAAPIV 276 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ L +P L++ PL + S N SG+ + + Sbjct: 277 LVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336 Query: 154 ILSS 157 L+ Sbjct: 337 ALAD 340 >gi|328946050|gb|EGG40196.1| hypothetical protein HMPREF9397_0832 [Streptococcus sanguinis SK1087] Length = 259 Score = 54.7 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 37/205 (18%), Positives = 72/205 (35%), Gaps = 28/205 (13%) Query: 17 EFLD-AGLPIAIPTETVYGLAVDSRNPTA-IRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 + L G I PT+ Y + + A + R +E K R P + + ++ A Sbjct: 17 DILKGDGGCIVCPTKVGYII---MTSDKAGLERKFEAKARNRNKPGVVLCGSMDELRALA 73 Query: 75 SVDPLSLHLAKLFWPGPLTL--VLDLLS---------TTDIHPLSTANLKTACFRVPCGF 123 ++P + W + L +L L T T+CF + G Sbjct: 74 QLNPEIEAFYQKHWDEDILLGCILPWKPEAFEKLKAFGDGREELMTDVRATSCFVIKFGK 133 Query: 124 TKKLIET----YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179 + + G + SAN SG+ + V+ + I + L+I+ + S Sbjct: 134 AGEQLAAKLWEEGKMVYASSANPSGKGNRGKVEG-IGERIENAVDLVIEADDY---VAS- 188 Query: 180 IVNVQCEKKVRILRPGGLEIETLKR 204 +Q +K + G+ + + + Sbjct: 189 ---IQPDKTIETRYEQGVMVSMVDK 210 >gi|300976873|ref|ZP_07173658.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS 45-1] gi|300409942|gb|EFJ93480.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS 45-1] Length = 753 Score = 54.7 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 45/124 (36%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + A P + L P + Sbjct: 229 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADDLPDAARQL-LTTPAAPIV 279 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ L +P L++ PL + S N SG+ + + Sbjct: 280 LVDKKYVPELCDDIALGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 339 Query: 154 ILSS 157 L+ Sbjct: 340 ALAD 343 >gi|332753429|gb|EGJ83809.1| [NiFe] hydrogenase maturation protein HypF [Shigella flexneri 4343-70] Length = 734 Score = 54.7 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 45/124 (36%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L E K RPA PL + + + L P + Sbjct: 210 LACDARNSNAVATLRERKHRPA-KPLAVMLPVAESL------PDAARQLL--TTPAAPIV 260 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ L +P L++ PL + S N SG+ + + Sbjct: 261 LVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 320 Query: 154 ILSS 157 L+ Sbjct: 321 ALAD 324 >gi|189009989|ref|ZP_02803700.2| carbamoyltransferase HypF [Escherichia coli O157:H7 str. EC4076] gi|189402148|ref|ZP_02780463.2| carbamoyltransferase HypF [Escherichia coli O157:H7 str. EC4401] gi|189403173|ref|ZP_02793809.2| carbamoyltransferase HypF [Escherichia coli O157:H7 str. EC4486] gi|189404208|ref|ZP_02787897.2| carbamoyltransferase HypF [Escherichia coli O157:H7 str. EC4501] gi|189405070|ref|ZP_02812973.2| carbamoyltransferase HypF [Escherichia coli O157:H7 str. EC869] gi|208807858|ref|ZP_03250195.1| carbamoyltransferase HypF [Escherichia coli O157:H7 str. EC4206] gi|208818876|ref|ZP_03259196.1| carbamoyltransferase HypF [Escherichia coli O157:H7 str. EC4042] gi|209397726|ref|YP_002272174.1| carbamoyltransferase HypF [Escherichia coli O157:H7 str. EC4115] gi|217327432|ref|ZP_03443515.1| carbamoyltransferase HypF [Escherichia coli O157:H7 str. TW14588] gi|291284039|ref|YP_003500857.1| Carbamoyltransferase HypF [Escherichia coli O55:H7 str. CB9615] gi|189003574|gb|EDU72560.1| carbamoyltransferase HypF [Escherichia coli O157:H7 str. EC4076] gi|189357267|gb|EDU75686.1| carbamoyltransferase HypF [Escherichia coli O157:H7 str. EC4401] gi|189362053|gb|EDU80472.1| carbamoyltransferase HypF [Escherichia coli O157:H7 str. EC4486] gi|189366856|gb|EDU85272.1| carbamoyltransferase HypF [Escherichia coli O157:H7 str. EC4501] gi|189372219|gb|EDU90635.1| carbamoyltransferase HypF [Escherichia coli O157:H7 str. EC869] gi|208727659|gb|EDZ77260.1| carbamoyltransferase HypF [Escherichia coli O157:H7 str. EC4206] gi|208738999|gb|EDZ86681.1| carbamoyltransferase HypF [Escherichia coli O157:H7 str. EC4042] gi|209159126|gb|ACI36559.1| carbamoyltransferase HypF [Escherichia coli O157:H7 str. EC4115] gi|217319799|gb|EEC28224.1| carbamoyltransferase HypF [Escherichia coli O157:H7 str. TW14588] gi|290763912|gb|ADD57873.1| Carbamoyltransferase HypF [Escherichia coli O55:H7 str. CB9615] gi|320189044|gb|EFW63703.1| NiFe hydrogenase metallocenter assembly protein HypF [Escherichia coli O157:H7 str. EC1212] gi|326339217|gb|EGD63032.1| NiFe hydrogenase metallocenter assembly protein HypF [Escherichia coli O157:H7 str. 1044] gi|326342900|gb|EGD66668.1| carbamoyltransferase HypF [Escherichia coli O157:H7 str. 1125] Length = 766 Score = 54.7 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 44/124 (35%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + A P + L P + Sbjct: 242 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 292 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ L +P L++ PL + S N SG+ + + Sbjct: 293 LVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 352 Query: 154 ILSS 157 L Sbjct: 353 ALED 356 >gi|119472196|ref|XP_001258292.1| hypothetical protein NFIA_057440 [Neosartorya fischeri NRRL 181] gi|119406444|gb|EAW16395.1| conserved hypothetical protein [Neosartorya fischeri NRRL 181] Length = 257 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 40/218 (18%), Positives = 75/218 (34%), Gaps = 44/218 (20%) Query: 7 TDSNALRKACEF---LDAGLPIAIPTETVYGLAVDSRNPTA-IRRLYEIKKRPAMNPLIC 62 T N R A E L G + +PT+ Y L + A I+R++ K R + I Sbjct: 11 TAPNVPRDAKETYNTLKRGGVVIVPTDVGYAL---LTSSQAGIQRIFSAKDRREGHN-IG 66 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS---TTDIHPLS----------T 109 + ++ + + + +++ L++ T ++HP Sbjct: 67 IIGTYKQHREIHLLSEVKFE-MTRVLTEDMAMIVGLIAKYDTKNLHPRLATLDSSTLSQV 125 Query: 110 ANLKTACFRVPC-GFTKKLIETYGH-P----LAIPSANRSGQISITNVKHILSSSICKEI 163 T VP F ++L G P SAN +GQ + + + + Sbjct: 126 TKGDTISIAVPEGPFLRELGRLCGEDPDGMLTFGTSANLTGQGQRFRTED-IEPRLIGAV 184 Query: 164 PLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIET 201 L++D G+ +K + R GG+ + Sbjct: 185 DLVVDYGL---------------QKWQAYRRGGVNFDA 207 >gi|317179561|dbj|BAJ57349.1| transcriptional regulator [Helicobacter pylori F30] Length = 750 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 35/153 (22%), Positives = 57/153 (37%), Gaps = 14/153 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 + +AL + + + G IA+ GL D+RN I RL +K RP P Sbjct: 191 NDDALLECAKDIQKGKIIALK-----GLGGFALLCDARNFQTIERLRLLKNRPL-KPFAL 244 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 D++ K+HA ++ L P+ L+ T + P N +P Sbjct: 245 MFKDLNTAKQHAFLNALECESLNS-TSAPI-LLARKKPNTPLAPNIAKNSPFYGVILPYT 302 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154 L++ P+ SAN S ++ I Sbjct: 303 PLHALLLDLLDFPIVFTSANFSSLPLASDEAEI 335 >gi|217034517|ref|ZP_03439927.1| hypothetical protein HP9810_897g2 [Helicobacter pylori 98-10] gi|216942998|gb|EEC22479.1| hypothetical protein HP9810_897g2 [Helicobacter pylori 98-10] Length = 757 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 35/153 (22%), Positives = 57/153 (37%), Gaps = 14/153 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 + +AL + + + G IA+ GL D+RN I RL +K RP P Sbjct: 198 NDDALLECAKDIQKGKIIALK-----GLGGFALLCDARNFQTIERLRLLKNRPL-KPFAL 251 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 D++ K+HA ++ L P+ L+ T + P N +P Sbjct: 252 MFKDLNTAKQHAFLNALECESLNS-TSAPI-LLARKKPNTPLAPNIAKNSPFYGVILPYT 309 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154 L++ P+ SAN S ++ I Sbjct: 310 PLHALLLDLLDFPIVFTSANFSSLPLASDEAEI 342 >gi|261838661|gb|ACX98427.1| transcriptional regulator of hydrogenase activity [Helicobacter pylori 51] Length = 769 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 35/153 (22%), Positives = 57/153 (37%), Gaps = 14/153 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 + +AL + + + G IA+ GL D+RN I RL +K RP P Sbjct: 210 NDDALLECAKDIQKGKIIALK-----GLGGFALLCDARNFQTIERLRLLKNRPL-KPFAL 263 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 D++ K+HA ++ L P+ L+ T + P N +P Sbjct: 264 MFKDLNTAKQHAFLNALECESLNS-TSAPI-LLARKKPNTPLAPNIAKNSPFYGVILPYT 321 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154 L++ P+ SAN S ++ I Sbjct: 322 PLHALLLDLLDFPIVFTSANFSSLPLASDEAEI 354 >gi|332674144|gb|AEE70961.1| hydrogenase maturation protein HypF [Helicobacter pylori 83] Length = 750 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 35/153 (22%), Positives = 57/153 (37%), Gaps = 14/153 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 + +AL + + + G IA+ GL D+RN I RL +K RP P Sbjct: 191 NDDALLECAKDIQKGKIIALK-----GLGGFALLCDARNFQTIERLRLLKNRPL-KPFAL 244 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 D++ K+HA ++ L P+ L+ T + P N +P Sbjct: 245 MFKDLNTAKQHAFLNALECESLNS-TSAPI-LLARKKPNTPLAPNIAKNSPFYGVILPYT 302 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154 L++ P+ SAN S ++ I Sbjct: 303 PLHALLLDLLDFPIVFTSANFSSLPLASDEAEI 335 >gi|320640355|gb|EFX09894.1| hydrogenase maturation protein [Escherichia coli O157:H7 str. G5101] Length = 750 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 44/124 (35%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + A P + L P + Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ L +P L++ PL + S N SG+ + + Sbjct: 277 LVDKKYIPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336 Query: 154 ILSS 157 L Sbjct: 337 ALED 340 >gi|330956176|gb|EGH56436.1| SUA5/yciO/yrdC [Pseudomonas syringae Cit 7] Length = 76 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 2/70 (2%) Query: 73 HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYG 132 L L WPGP T ++ + T +T RV T + + Sbjct: 9 FEDFPELWLDRMASTWPGPNTWLVPHQ--NLLPEWITGIHETVALRVTDHPTVRELCALV 66 Query: 133 HPLAIPSANR 142 PL SAN Sbjct: 67 GPLISTSANP 76 >gi|302391448|ref|YP_003827268.1| (NiFe) hydrogenase maturation protein HypF [Acetohalobium arabaticum DSM 5501] gi|302203525|gb|ADL12203.1| (NiFe) hydrogenase maturation protein HypF [Acetohalobium arabaticum DSM 5501] Length = 756 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 46/211 (21%), Positives = 77/211 (36%), Gaps = 35/211 (16%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 L ++ L G IA V GL+ D N A+ RL K RP PL Sbjct: 201 EQPLEESGRLLRQGQIIA-----VKGLSGFHLICDGTNQQAVVRLRRNKSRP-NKPLAVM 254 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 + I VK++ V L + + P ++L + + N + +P Sbjct: 255 MDRIETVKEYCQVSKLEADILQGIR-KP--ILLLEKKGSRLPFNIAPNNNSLGVMLPYTP 311 Query: 124 TKKLI--ETYGHPLAIPSANRS-------GQISITNVKHILSSSICK--EIPLIIDGGIS 172 L+ + L + SAN+S Q ++ N++ I + EI L ID Sbjct: 312 LHCLLFSDQLQI-LVVTSANQSSLPLEYKNQSALENLREITDYFLLHNREIHLPIDD--- 367 Query: 173 KIGLESTIVNVQCEKKVRILRPGGLEIETLK 203 ++V V K+ + R G + ++ Sbjct: 368 ------SVVEVMAGKERIVRRSRGYTPQPIE 392 >gi|187779569|ref|ZP_02996042.1| hypothetical protein CLOSPO_03165 [Clostridium sporogenes ATCC 15579] gi|187773194|gb|EDU36996.1| hypothetical protein CLOSPO_03165 [Clostridium sporogenes ATCC 15579] Length = 808 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 33/151 (21%), Positives = 49/151 (32%), Gaps = 14/151 (9%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 + A E + G +A V G+ + +N AI L KKRP PL D Sbjct: 243 IYTAVELIKKGYIVA-----VKGIGGFHLVCNGKNKKAIENLRIRKKRP-HKPLAIMCKD 296 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126 + VK+ + L + K L+L ST + K +P Sbjct: 297 LKTVKELCYISKLEEQILKGN--KKPILILKKKSTNILPDNIAPLNKYIGVMLPYSPLHY 354 Query: 127 LIETYGH-PLAIPSANRSGQISITNVKHILS 156 L+ G + S N SG + Sbjct: 355 LLFKEGLDVIIATSGNISGIPMEYKNCEAIE 385 >gi|331684324|ref|ZP_08384916.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli H299] gi|331077939|gb|EGI49145.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli H299] Length = 750 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 45/126 (35%), Gaps = 10/126 (7%) Query: 33 YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPL 92 Y LA D+RN A+ L K RPA PL + + + L P Sbjct: 224 YHLACDARNSNAVATLRARKHRPA-KPLAVMLPVAEGL------PDAARQLL--TTPAAP 274 Query: 93 TLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNV 151 +++D ++ L +P L++ PL + S N SG+ + Sbjct: 275 IVLVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISN 334 Query: 152 KHILSS 157 + L+ Sbjct: 335 EQALAD 340 >gi|15832822|ref|NP_311595.1| transcriptional regulatory protein [Escherichia coli O157:H7 str. Sakai] gi|168749964|ref|ZP_02774986.1| carbamoyltransferase HypF [Escherichia coli O157:H7 str. EC4113] gi|168774757|ref|ZP_02799764.1| carbamoyltransferase HypF [Escherichia coli O157:H7 str. EC4196] gi|168800208|ref|ZP_02825215.1| carbamoyltransferase HypF [Escherichia coli O157:H7 str. EC508] gi|195938461|ref|ZP_03083843.1| transcriptional regulatory protein [Escherichia coli O157:H7 str. EC4024] gi|208813926|ref|ZP_03255255.1| carbamoyltransferase HypF [Escherichia coli O157:H7 str. EC4045] gi|254794652|ref|YP_003079489.1| carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases [Escherichia coli O157:H7 str. TW14359] gi|261226006|ref|ZP_05940287.1| carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases [Escherichia coli O157:H7 str. FRIK2000] gi|261256736|ref|ZP_05949269.1| carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases [Escherichia coli O157:H7 str. FRIK966] gi|13363039|dbj|BAB36991.1| transcriptional regulatory protein [Escherichia coli O157:H7 str. Sakai] gi|187769621|gb|EDU33465.1| carbamoyltransferase HypF [Escherichia coli O157:H7 str. EC4196] gi|188015770|gb|EDU53892.1| carbamoyltransferase HypF [Escherichia coli O157:H7 str. EC4113] gi|189377506|gb|EDU95922.1| carbamoyltransferase HypF [Escherichia coli O157:H7 str. EC508] gi|208735203|gb|EDZ83890.1| carbamoyltransferase HypF [Escherichia coli O157:H7 str. EC4045] gi|209761978|gb|ACI79301.1| transcriptional regulatory protein [Escherichia coli] gi|209761980|gb|ACI79302.1| transcriptional regulatory protein [Escherichia coli] gi|209761982|gb|ACI79303.1| transcriptional regulatory protein [Escherichia coli] gi|209761984|gb|ACI79304.1| transcriptional regulatory protein [Escherichia coli] gi|209761986|gb|ACI79305.1| transcriptional regulatory protein [Escherichia coli] gi|254594052|gb|ACT73413.1| carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases [Escherichia coli O157:H7 str. TW14359] gi|320645902|gb|EFX14883.1| hydrogenase maturation protein [Escherichia coli O157:H- str. 493-89] gi|320651202|gb|EFX19637.1| hydrogenase maturation protein [Escherichia coli O157:H- str. H 2687] gi|320656752|gb|EFX24640.1| hydrogenase maturation protein [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662295|gb|EFX29692.1| hydrogenase maturation protein [Escherichia coli O55:H7 str. USDA 5905] gi|320667346|gb|EFX34304.1| hydrogenase maturation protein [Escherichia coli O157:H7 str. LSU-61] Length = 750 Score = 54.3 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 44/124 (35%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + A P + L P + Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ L +P L++ PL + S N SG+ + + Sbjct: 277 LVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336 Query: 154 ILSS 157 L Sbjct: 337 ALED 340 >gi|15803229|ref|NP_289261.1| transcriptional regulatory protein [Escherichia coli O157:H7 EDL933] gi|12517157|gb|AAG57819.1|AE005499_6 transcriptional regulatory protein [Escherichia coli O157:H7 str. EDL933] Length = 750 Score = 54.3 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 44/124 (35%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + A P + L P + Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ L +P L++ PL + S N SG+ + + Sbjct: 277 LVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336 Query: 154 ILSS 157 L Sbjct: 337 ALED 340 >gi|312196536|ref|YP_004016597.1| (NiFe) hydrogenase maturation protein HypF [Frankia sp. EuI1c] gi|311227872|gb|ADP80727.1| (NiFe) hydrogenase maturation protein HypF [Frankia sp. EuI1c] Length = 807 Score = 54.3 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 43/234 (18%), Positives = 78/234 (33%), Gaps = 22/234 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLIC 62 D++ + ++ E L AG +A+ GL D+R+ A RL K R A P Sbjct: 215 DADPIERSAELLRAGAVLAMK-----GLGGYHLAVDARSDAAAARLRGRKHR-ADKPFAV 268 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 VSD++ ++ +V P++ L P+ L+ L + + P Sbjct: 269 MVSDVAAARELCAVGPVAERLLTGRR-RPIVLLDLLPGGPGVARSVAPGTRQLGLMTPYT 327 Query: 123 FTKKLIE-TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII-DGGISKIGLESTI 180 L+ + PL + S N S + + + + + + ++ Sbjct: 328 PAHHLLLAAFSGPLVLTSGNVSDEPIVYRDDEAFG-RLGPIADYFLVHDRPIHVRADDSV 386 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETS--TPQSPGMLKSHYAP 232 V V R E +R + E ++ G YAP Sbjct: 387 VRVLPSWPGEPRRERPPAGEPSRRPTNKPGSPAAGEREQLVRRARG-----YAP 435 >gi|254723243|ref|ZP_05185031.1| [NiFe] hydrogenase maturation protein HypF [Bacillus anthracis str. A1055] Length = 776 Score = 54.3 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 55/169 (32%), Gaps = 15/169 (8%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNP 59 +++ N + K + L G +AI GL D N A++ L + KKR P Sbjct: 203 NVSTDNPIEKTIDLLKKGKILAIK-----GLGGYHLVVDPMNHEAVKELRKRKKRDE-KP 256 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 S + VK A + L + P+ ++L+ I + T + Sbjct: 257 FALMSSQLDDVKNFAEITKNEETLL-VSKERPI-VLLNKKDNEYISSDVAPSNNTYGVML 314 Query: 120 PCGFTKKLIETYGHP-LAIPSANRSGQISITNVKHILSSSICKEIPLII 167 LI L SAN S + + + + + Sbjct: 315 AYTPLHHLILRGNFISLIATSANVSDEPIVYKDGDAI-EQLKGIADYYL 362 >gi|196032592|ref|ZP_03100006.1| hydrogenase maturation protein HypF [Bacillus cereus W] gi|228928323|ref|ZP_04091364.1| Hydrogenase maturation protein [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228934529|ref|ZP_04097364.1| Hydrogenase maturation protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|195995343|gb|EDX59297.1| hydrogenase maturation protein HypF [Bacillus cereus W] gi|228825166|gb|EEM70963.1| Hydrogenase maturation protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228831370|gb|EEM76966.1| Hydrogenase maturation protein [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 776 Score = 54.3 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 55/169 (32%), Gaps = 15/169 (8%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNP 59 +++ N + K + L G +AI GL D N A++ L + KKR P Sbjct: 203 NVSTDNPIEKTIDLLKKGKILAIK-----GLGGYHLVVDPMNHEAVKELRKRKKRDE-KP 256 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 S + VK A + L + P+ ++L+ I + T + Sbjct: 257 FALMSSQLDDVKNFAEITKNEETLL-VSKERPI-VLLNKKDNEYISSDVAPSNNTYGVML 314 Query: 120 PCGFTKKLIETYGHP-LAIPSANRSGQISITNVKHILSSSICKEIPLII 167 LI L SAN S + + + + + Sbjct: 315 AYTPLHHLILRGNFISLIATSANVSDEPIVYKDGDAI-EQLKGIADYYL 362 >gi|119385818|ref|YP_916873.1| (NiFe) hydrogenase maturation protein HypF [Paracoccus denitrificans PD1222] gi|119376413|gb|ABL71177.1| (NiFe) hydrogenase maturation protein HypF [Paracoccus denitrificans PD1222] Length = 749 Score = 54.3 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 34/190 (17%), Positives = 62/190 (32%), Gaps = 28/190 (14%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+ + A+ L K+RP+ P +M+ HA+ L + P Sbjct: 226 LACDAADARAVALLRARKRRPS-KPFALM-GTEAMICAHATPSEACWRLLRD----PAAP 279 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKH 153 V+ + + + ++ +P LI +G L + S N SG +T Sbjct: 280 VVLVPARGTLPEDVAPGMRALGVMLPYTPLHHLLIAAFGGMLVMTSGNLSGAPQVTGNDE 339 Query: 154 ILSS---------SICKEIPLIIDGGISKIGLESTIVNVQC------------EKKVRIL 192 + +EI +D G+ + I + + R+L Sbjct: 340 ARKALARFADGFLMHNREIARRLDDGVERADPPMVIRRARGRVPGTLPLPPGFDGAPRVL 399 Query: 193 RPGGLEIETL 202 GG + Sbjct: 400 AFGGQMKAAI 409 >gi|308182230|ref|YP_003926357.1| Hydrogenase maturation protein HypF [Helicobacter pylori PeCan4] gi|308064415|gb|ADO06307.1| Hydrogenase maturation protein HypF [Helicobacter pylori PeCan4] Length = 750 Score = 54.3 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 58/154 (37%), Gaps = 16/154 (10%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 + +AL + + + G IA+ GL D+RN I RL +KKRP P Sbjct: 191 NDDALLECAKDIQKGKIIALK-----GLGGFALLCDARNFQTIERLRLLKKRPL-KPFAL 244 Query: 63 HVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120 D++ K+HA ++ L L P L+ T + P N +P Sbjct: 245 MFKDLNAAKQHAFLNALECESLISTSAP---ILLARKKPNTQLAPNIAKNSPFYGVILPY 301 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154 L++ P+ SAN S ++ I Sbjct: 302 TPLHALLLDLLDFPIVFTSANFSSLPLASDEVEI 335 >gi|311235122|gb|ADP87976.1| (NiFe) hydrogenase maturation protein HypF [Desulfovibrio vulgaris RCH1] Length = 816 Score = 54.3 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 47/125 (37%), Gaps = 12/125 (9%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+ + A+ L E K+RP PL V D+ V++ A+ P L L P+ + Sbjct: 261 LACDATDDAAVTTLRERKRRP-HKPLAVMVPDMDTVRRIAAPTPDEERLI-LSQERPI-V 317 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVP----CGF---TKKLIETYGHPLA--IPSANRSGQ 145 + + + + +P T + G + PSA+ Sbjct: 318 LCRARDDGPLASAVSPDTDHVGVMLPYTPLHHVLFDTLADLRREGGTSSRRTPSASDVCA 377 Query: 146 ISITN 150 + +T+ Sbjct: 378 LVMTS 382 >gi|165940636|gb|ABY75253.1| HypF [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 860 Score = 54.3 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 45/125 (36%), Gaps = 13/125 (10%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59 T + A++ E L AG A V GL D+ + A+ L K RP P Sbjct: 240 RPTGTPAIQALAEALAAGRIAA-----VKGLGGFHLACDAASDAAVGELRRRKHRP-HKP 293 Query: 60 LICHVSDISMVKKHASVDPLSLHLAK-LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 L V D++ ++ V P L P L LD L+ +H ++ + Sbjct: 294 LAIMVPDLAAARRIVHVSPEEEALLAGRERPIVLCRALDGLAG-GMHGVARPGDGSPLVL 352 Query: 119 VPCGF 123 P Sbjct: 353 DPDAP 357 >gi|46581470|ref|YP_012278.1| [NiFe] hydrogenase maturation protein HypF [Desulfovibrio vulgaris str. Hildenborough] gi|46450892|gb|AAS97538.1| [NiFe] hydrogenase maturation protein HypF [Desulfovibrio vulgaris str. Hildenborough] Length = 839 Score = 54.3 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 47/125 (37%), Gaps = 12/125 (9%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+ + A+ L E K+RP PL V D+ V++ A+ P L L P+ + Sbjct: 284 LACDATDDAAVTTLRERKRRP-HKPLAVMVPDMDTVRRIAAPTPDEERLI-LSQERPI-V 340 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVP----CGF---TKKLIETYGHPLA--IPSANRSGQ 145 + + + + +P T + G + PSA+ Sbjct: 341 LCRARDDGPLASAVSPDTDHVGVMLPYTPLHHVLFDTLADLRREGGTSSRRTPSASDVCA 400 Query: 146 ISITN 150 + +T+ Sbjct: 401 LVMTS 405 >gi|284922648|emb|CBG35736.1| hydrogenase maturation protein [Escherichia coli 042] Length = 750 Score = 54.3 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 49/144 (34%), Gaps = 20/144 (13%) Query: 20 DAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74 AG +AI G+ D+RN A+ L K RPA PL + + Sbjct: 211 KAGKIVAIK-----GIGGFHLACDARNSNAVATLRARKHRPA-KPLAVMLPVAEGL---- 260 Query: 75 SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGH 133 + L P +++D ++ L +P L++ Sbjct: 261 --PDAARQLL--TTPAAPIVLVDKKYVPELCDNIAPGLNEVGVMLPANPLQHLLLQELQC 316 Query: 134 PLAIPSANRSGQISITNVKHILSS 157 PL + S N SG+ + + L+ Sbjct: 317 PLVMTSGNLSGKPPAISNEQALAD 340 >gi|256826574|ref|YP_003150533.1| (NiFe) hydrogenase maturation protein HypF [Cryptobacterium curtum DSM 15641] gi|256582717|gb|ACU93851.1| (NiFe) hydrogenase maturation protein HypF [Cryptobacterium curtum DSM 15641] Length = 848 Score = 54.3 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 53/161 (32%), Gaps = 17/161 (10%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPL 60 + + L AG +AI GL D+ N AI L K+RP PL Sbjct: 231 VQSDAIIAACIAVLTAGGIVAIK-----GLGGFHLACDATNEQAIAELRRRKRRP-GKPL 284 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 C V+ + + L P ++L S + L +P Sbjct: 285 ACMVATLDKARALCQTTQEEEALLSS--PARPIVLLRKRSDVSFATGLSDGLSEMGLMLP 342 Query: 121 CGFTKKLI-ETYGHPLAIPSANRSGQISITNV---KHILSS 157 + LI +G L + S N + T+ H+L+ Sbjct: 343 ATPLQHLILRAFGGMLVMTSGNVHDEPIQTDDARAAHVLAD 383 >gi|293415961|ref|ZP_06658601.1| hydrogenase maturation protein HypF [Escherichia coli B185] gi|291432150|gb|EFF05132.1| hydrogenase maturation protein HypF [Escherichia coli B185] Length = 750 Score = 53.9 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 45/124 (36%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + A P + L P + Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D +I L +P L++ PL + S N SG+ + + Sbjct: 277 LVDKKYVPEICDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336 Query: 154 ILSS 157 L+ Sbjct: 337 ALAD 340 >gi|218887443|ref|YP_002436764.1| (NiFe) hydrogenase maturation protein HypF [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758397|gb|ACL09296.1| (NiFe) hydrogenase maturation protein HypF [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 852 Score = 53.9 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 45/125 (36%), Gaps = 13/125 (10%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59 T + A++ E L AG A V GL D+ + A+ L K RP P Sbjct: 232 RPTGTPAIQALAEALAAGRIAA-----VKGLGGFHLACDAASDAAVGELRRRKHRP-HKP 285 Query: 60 LICHVSDISMVKKHASVDPLSLHLAK-LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 L V D++ ++ V P L P L LD L+ +H ++ + Sbjct: 286 LAIMVPDLAAARRIVHVSPEEEALLAGRERPIVLCRALDGLAG-GMHGVARPGDGSPLVL 344 Query: 119 VPCGF 123 P Sbjct: 345 DPDAP 349 >gi|296109193|ref|YP_003616142.1| (NiFe) hydrogenase maturation protein HypF [Methanocaldococcus infernus ME] gi|295434007|gb|ADG13178.1| (NiFe) hydrogenase maturation protein HypF [Methanocaldococcus infernus ME] Length = 725 Score = 53.9 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 41/212 (19%), Positives = 69/212 (32%), Gaps = 30/212 (14%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 A+++A + L+ G +AI G+ + + RL EI RP+ P Sbjct: 189 DEAIKEAIKLLEKGKILAIK-----GIGGYHLFCRADRDEPVLRLREILNRPS-QPFAVM 242 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 S I VKK A + L P+ +VL + + NL T +P Sbjct: 243 -SLIEEVKKFAILSKEEEILLTS-RERPI-VVLKKSKDYYLSEYVS-NLDTVGVMLPYTG 298 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICK------EIPLIIDGGISKIGLE 177 L+ SAN G + I+ + I D Sbjct: 299 LHYLLFNKVPAYVATSANLPGLPMAIDEGEIVKLKVDGYLMHNRRIINRCDD-------- 350 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAISVE 209 ++V + + + R G E ++ I + Sbjct: 351 -SVVKYIAGRAIFLRRSRGYVPEPIEVEIKND 381 >gi|331654189|ref|ZP_08355189.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli M718] gi|331047571|gb|EGI19648.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli M718] Length = 766 Score = 53.9 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 45/124 (36%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + A P + L P + Sbjct: 242 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 292 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D +I L +P L++ PL + S N SG+ + + Sbjct: 293 LVDKKYVPEICDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 352 Query: 154 ILSS 157 L+ Sbjct: 353 ALAD 356 >gi|167632690|ref|ZP_02391017.1| hydrogenase maturation protein HypF [Bacillus anthracis str. A0442] gi|170684887|ref|ZP_02876112.1| hydrogenase maturation protein HypF [Bacillus anthracis str. A0465] gi|254685837|ref|ZP_05149696.1| [NiFe] hydrogenase maturation protein HypF [Bacillus anthracis str. CNEVA-9066] gi|254742525|ref|ZP_05200210.1| [NiFe] hydrogenase maturation protein HypF [Bacillus anthracis str. Kruger B] gi|167532988|gb|EDR95624.1| hydrogenase maturation protein HypF [Bacillus anthracis str. A0442] gi|170671147|gb|EDT21885.1| hydrogenase maturation protein HypF [Bacillus anthracis str. A0465] Length = 770 Score = 53.9 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 56/169 (33%), Gaps = 15/169 (8%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNP 59 +++ N + K + L G +AI GL D N A++ L + KKR P Sbjct: 197 NVSTDNPIEKTIDLLKKGKILAIK-----GLGGYHLVVDPMNHEAVKELRKRKKRDE-KP 250 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 S + VK A + L + P+ ++L+ I ++ T + Sbjct: 251 FALMSSQLDDVKNFAEITKNEETLL-VSKERPI-VLLNKKDNEYISSDVASSNNTYGVML 308 Query: 120 PCGFTKKLIETYGHP-LAIPSANRSGQISITNVKHILSSSICKEIPLII 167 LI L SAN S + + + + + Sbjct: 309 AYTPLHHLILRGNFISLIATSANVSDEPIVYKDGDAI-EQLKGIADYYL 356 >gi|30263224|ref|NP_845601.1| hydrogenase maturation protein HypF [Bacillus anthracis str. Ames] gi|47528598|ref|YP_019947.1| hydrogenase maturation protein HypF [Bacillus anthracis str. 'Ames Ancestor'] gi|49186075|ref|YP_029327.1| hydrogenase maturation protein HypF [Bacillus anthracis str. Sterne] gi|165868612|ref|ZP_02213272.1| hydrogenase maturation protein HypF [Bacillus anthracis str. A0488] gi|167637108|ref|ZP_02395388.1| hydrogenase maturation protein HypF [Bacillus anthracis str. A0193] gi|170704939|ref|ZP_02895404.1| hydrogenase maturation protein HypF [Bacillus anthracis str. A0389] gi|177649985|ref|ZP_02932986.1| hydrogenase maturation protein HypF [Bacillus anthracis str. A0174] gi|190564762|ref|ZP_03017683.1| hydrogenase maturation protein HypF [Bacillus anthracis Tsiankovskii-I] gi|227813906|ref|YP_002813915.1| [NiFe] hydrogenase maturation protein HypF [Bacillus anthracis str. CDC 684] gi|229603801|ref|YP_002867485.1| (NiFe) hydrogenase maturation protein HypF [Bacillus anthracis str. A0248] gi|254738308|ref|ZP_05196011.1| [NiFe] hydrogenase maturation protein HypF [Bacillus anthracis str. Western North America USA6153] gi|254752624|ref|ZP_05204660.1| [NiFe] hydrogenase maturation protein HypF [Bacillus anthracis str. Vollum] gi|254761139|ref|ZP_05213163.1| [NiFe] hydrogenase maturation protein HypF [Bacillus anthracis str. Australia 94] gi|30257858|gb|AAP27087.1| [NiFe] hydrogenase maturation protein HypF [Bacillus anthracis str. Ames] gi|47503746|gb|AAT32422.1| hydrogenase maturation protein HypF [Bacillus anthracis str. 'Ames Ancestor'] gi|49180002|gb|AAT55378.1| hydrogenase maturation protein HypF [Bacillus anthracis str. Sterne] gi|164715338|gb|EDR20855.1| hydrogenase maturation protein HypF [Bacillus anthracis str. A0488] gi|167514615|gb|EDR89981.1| hydrogenase maturation protein HypF [Bacillus anthracis str. A0193] gi|170129794|gb|EDS98656.1| hydrogenase maturation protein HypF [Bacillus anthracis str. A0389] gi|172083937|gb|EDT68996.1| hydrogenase maturation protein HypF [Bacillus anthracis str. A0174] gi|190564079|gb|EDV18043.1| hydrogenase maturation protein HypF [Bacillus anthracis Tsiankovskii-I] gi|227006291|gb|ACP16034.1| [NiFe] hydrogenase maturation protein HypF [Bacillus anthracis str. CDC 684] gi|229268209|gb|ACQ49846.1| (NiFe) hydrogenase maturation protein HypF [Bacillus anthracis str. A0248] Length = 776 Score = 53.9 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 56/169 (33%), Gaps = 15/169 (8%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNP 59 +++ N + K + L G +AI GL D N A++ L + KKR P Sbjct: 203 NVSTDNPIEKTIDLLKKGKILAIK-----GLGGYHLVVDPMNHEAVKELRKRKKRDE-KP 256 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 S + VK A + L + P+ ++L+ I ++ T + Sbjct: 257 FALMSSQLDDVKNFAEITKNEETLL-VSKERPI-VLLNKKDNEYISSDVASSNNTYGVML 314 Query: 120 PCGFTKKLIETYGHP-LAIPSANRSGQISITNVKHILSSSICKEIPLII 167 LI L SAN S + + + + + Sbjct: 315 AYTPLHHLILRGNFISLIATSANVSDEPIVYKDGDAI-EQLKGIADYYL 362 >gi|237750734|ref|ZP_04581214.1| transcriptional regulatory protein HypF [Helicobacter bilis ATCC 43879] gi|229373824|gb|EEO24215.1| transcriptional regulatory protein HypF [Helicobacter bilis ATCC 43879] Length = 490 Score = 53.9 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 59/152 (38%), Gaps = 20/152 (13%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 D +A++ + L + GL ++R+ A++++ IK R P + Sbjct: 268 DLDAIKTLAKALMQNNIVLFK-----GLGGFAYIANARSKEALQKIRSIKNR-LHKPFVV 321 Query: 63 HVSDISMVKKHASVDPLSLHLA-KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 ++I ++ + + P L P +++ ++ ++ L+T +P Sbjct: 322 M-ANIPTLRTISLLTPQLESLLTSKEAP---IVIVPKHPQYNLSNEVSS-LQTIGVVIPY 376 Query: 122 GFTKKLIETYGHP---LAIPSANRSGQISITN 150 L+ +Y P + SAN G++ T Sbjct: 377 TAMLTLLFSYLSPDFAMIYTSANNKGEMIATT 408 >gi|157162158|ref|YP_001459476.1| carbamoyltransferase HypF [Escherichia coli HS] gi|157067838|gb|ABV07093.1| carbamoyltransferase HypF [Escherichia coli HS] Length = 750 Score = 53.9 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 44/124 (35%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + + + L P + Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVMLPVAEGL------PDAARQLL--TTPAAPIV 276 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ L +P L++ PL + S N SG+ + + Sbjct: 277 LVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336 Query: 154 ILSS 157 L+ Sbjct: 337 ALAD 340 >gi|27652441|gb|AAO17546.1| BmTCTP receptor [Rattus norvegicus] Length = 160 Score = 53.9 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 47/123 (38%), Gaps = 26/123 (21%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS-----------MVKKHASVDPLSLHL 83 LA + A+ +Y H+ D ++ V + L Sbjct: 7 LACSASCSAALSCVYR-----------GHLGDAEKAAVSGLVHKVNAYRYCQVR-VPREL 54 Query: 84 AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142 + +PGP+TLV++ + +++ R+P F L + +G PLA+ SAN Sbjct: 55 LEDLFPGPVTLVMER--SEELNKDLNPFTPLVGIRIPDHAFMLDLAQMFGGPLALTSANL 112 Query: 143 SGQ 145 S Q Sbjct: 113 SSQ 115 >gi|222529082|ref|YP_002572964.1| (NiFe) hydrogenase maturation protein HypF [Caldicellulosiruptor bescii DSM 6725] gi|222455929|gb|ACM60191.1| (NiFe) hydrogenase maturation protein HypF [Caldicellulosiruptor bescii DSM 6725] Length = 755 Score = 53.9 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 37/168 (22%), Positives = 61/168 (36%), Gaps = 25/168 (14%) Query: 14 KACEFLD-------AGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLI 61 +A E LD G +AI G+ D N T ++RL+E K+R PL Sbjct: 199 EAIELLDFVSQKILEGYIVAIK-----GIGGFHLVCDPYNETVVKRLFESKRR-EGKPLA 252 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF-RVP 120 I +VKK+ V+ + + + P ++ T+ +NL T R Sbjct: 253 LVARGIEVVKKYCHVN----KMEEEIFSSPRCPIILFEKKTEHFSHVNSNLHTLGIMRAY 308 Query: 121 CGFTKKLIETYGH-PLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 ++ G L SAN SG I + + + ++ Sbjct: 309 TPILDYILSKTGRDFLIATSANLSGIPMIIDESDAI-QKLEGICDYVL 355 >gi|281179716|dbj|BAI56046.1| transcriptional regulator [Escherichia coli SE15] Length = 750 Score = 53.9 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 45/124 (36%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + A P + L P + Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ L +P L++ PL + S N SG+ + + Sbjct: 277 LVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336 Query: 154 ILSS 157 L+ Sbjct: 337 ALAD 340 >gi|148379795|ref|YP_001254336.1| [NiFe] hydrogenase maturation protein HypF [Clostridium botulinum A str. ATCC 3502] gi|153932626|ref|YP_001384093.1| [NiFe] hydrogenase maturation protein HypF [Clostridium botulinum A str. ATCC 19397] gi|153936241|ref|YP_001387633.1| [NiFe] hydrogenase maturation protein HypF [Clostridium botulinum A str. Hall] gi|148289279|emb|CAL83375.1| hydrogenase maturation protein [Clostridium botulinum A str. ATCC 3502] gi|152928670|gb|ABS34170.1| [NiFe] hydrogenase maturation protein HypF [Clostridium botulinum A str. ATCC 19397] gi|152932155|gb|ABS37654.1| [NiFe] hydrogenase maturation protein HypF [Clostridium botulinum A str. Hall] Length = 812 Score = 53.9 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 33/151 (21%), Positives = 52/151 (34%), Gaps = 14/151 (9%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 + A E + G +A V G+ D +N AI L KKRP PL D Sbjct: 247 IYTAIELIKKGYIVA-----VKGIGGFHLVCDGKNKKAIENLRIRKKRP-HKPLAIMCKD 300 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126 + +VK+ V L + + L+L +T + + K +P Sbjct: 301 LKIVKELCYVSKLEEQILEGT--KKPILILKKKATNILPDNISPFNKHLGVMLPYSPLHY 358 Query: 127 LIETYGH-PLAIPSANRSGQISITNVKHILS 156 L+ G + S N SG+ + Sbjct: 359 LLFKEGLDIIIATSGNVSGRPMEYKNCEAIE 389 >gi|228986340|ref|ZP_04146477.1| Hydrogenase maturation protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228773367|gb|EEM21796.1| Hydrogenase maturation protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 776 Score = 53.9 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 54/169 (31%), Gaps = 15/169 (8%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNP 59 +++ N + K + L G +AI GL D N A++ L + KKR P Sbjct: 203 NVSTDNPIEKTIDLLKKGKILAIK-----GLGGYHLVVDPMNHEAVKELRKRKKRDE-KP 256 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 S + VK A + L + P+ ++L+ I N + Sbjct: 257 FALMSSQLDDVKNFAEITKNEETLL-VSKERPI-VLLNKKDNEFISLDVAPNNNNYGVML 314 Query: 120 PCGFTKKLIETYGH-PLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 LI L SAN S + + + + + Sbjct: 315 AYTPLHHLILRGNFIALIATSANVSDEPIVYKDGDAI-EQLKGIADYYL 362 >gi|229046924|ref|ZP_04192554.1| Hydrogenase maturation protein [Bacillus cereus AH676] gi|228724402|gb|EEL75729.1| Hydrogenase maturation protein [Bacillus cereus AH676] Length = 770 Score = 53.9 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 54/169 (31%), Gaps = 15/169 (8%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNP 59 +++ N + K + L G +AI GL D N A++ L + KKR P Sbjct: 203 NVSTDNPIEKTIDLLKKGKILAIK-----GLGGYHLVVDPMNHEAVKELRKRKKRDE-KP 256 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 S + VK A + L + P+ ++L+ I N + Sbjct: 257 FALMSSQLDDVKNFAEITKNEETLL-VSKERPI-VLLNKKDNEFISLDVAPNNNNYGVML 314 Query: 120 PCGFTKKLIETYGH-PLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 LI L SAN S + + + + + Sbjct: 315 AYTPLHHLILRGNFIALIATSANVSDEPIVYKDGDAI-EQLKGIADYYL 362 >gi|229110672|ref|ZP_04240236.1| Hydrogenase maturation protein [Bacillus cereus Rock1-15] gi|228672740|gb|EEL28020.1| Hydrogenase maturation protein [Bacillus cereus Rock1-15] Length = 452 Score = 53.9 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 54/169 (31%), Gaps = 15/169 (8%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNP 59 +++ N + K + L G +AI GL D N A++ L + KKR P Sbjct: 203 NVSTDNPIEKTIDLLKKGKILAIK-----GLGGYHLVVDPMNHEAVKELRKRKKRDE-KP 256 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 S + VK A + L + P+ ++L+ I N + Sbjct: 257 FALMSSQLDDVKNFAEITKNEETLL-VSKERPI-VLLNKKDNEFISLDVAPNNNNYGVML 314 Query: 120 PCGFTKKLIETYGH-PLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 LI L SAN S + + + + + Sbjct: 315 AYTPLHHLILRGNFIALIATSANVSDEPIVYKDGDAI-EQLKGIADYYL 362 >gi|30021351|ref|NP_832982.1| hydrogenase maturation protein hypF [Bacillus cereus ATCC 14579] gi|229128520|ref|ZP_04257498.1| Hydrogenase maturation protein [Bacillus cereus BDRD-Cer4] gi|29896905|gb|AAP10183.1| Hydrogenase maturation protein hypF [Bacillus cereus ATCC 14579] gi|228654713|gb|EEL10573.1| Hydrogenase maturation protein [Bacillus cereus BDRD-Cer4] Length = 709 Score = 53.9 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 54/169 (31%), Gaps = 15/169 (8%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNP 59 +++ N + K + L G +AI GL D N A++ L + KKR P Sbjct: 203 NVSTDNPIEKTIDLLKKGKILAIK-----GLGGYHLVVDPMNHEAVKELRKRKKRDE-KP 256 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 S + VK A + L + P+ ++L+ I N + Sbjct: 257 FALMSSQLDDVKNFAEITKNEETLL-VSKERPI-VLLNKKDNEFISLDVAPNNNNYGVML 314 Query: 120 PCGFTKKLIETYGH-PLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 LI L SAN S + + + + + Sbjct: 315 AYTPLHHLILRGNFIALIATSANVSDEPIVYKDGDAI-EQLKGIADYYL 362 >gi|15611112|ref|NP_222763.1| putative transcriptional regulator [Helicobacter pylori J99] gi|4154540|gb|AAD05618.1| putative TRANSCRIPTIONAL REGULATOR [Helicobacter pylori J99] Length = 757 Score = 53.9 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 36/153 (23%), Positives = 58/153 (37%), Gaps = 14/153 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 + +AL + + + G IA+ GL D+RN I RL +K RP P Sbjct: 198 NDDALLECAKDIQKGKIIALK-----GLGGFALLCDARNFKTIERLRLLKNRPL-KPFAL 251 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 D++ K+HA ++ L P+ L+ T + P N +P Sbjct: 252 MFKDLNAAKQHAFLNALECESLNSVS-API-LLARKKPDTQLAPNIAKNSPFYGVILPYT 309 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154 L++ P+ SAN S ++ K I Sbjct: 310 PLHALLLDLLDSPIVFTSANFSSLPLASDEKEI 342 >gi|301027103|ref|ZP_07190474.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS 69-1] gi|300395203|gb|EFJ78741.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS 69-1] Length = 770 Score = 53.9 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 44/124 (35%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + + + L P + Sbjct: 250 LACDARNSNAVATLRARKHRPA-KPLAVMLPVAEGL------PDAARQLL--TTPAAPIV 300 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ L +P L++ PL + S N SG+ + + Sbjct: 301 LVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 360 Query: 154 ILSS 157 L+ Sbjct: 361 ALAD 364 >gi|300906789|ref|ZP_07124471.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS 84-1] gi|301305402|ref|ZP_07211496.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS 124-1] gi|300401483|gb|EFJ85021.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS 84-1] gi|300839322|gb|EFK67082.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS 124-1] gi|315254489|gb|EFU34457.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS 85-1] Length = 750 Score = 53.9 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 45/124 (36%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + A P + L P + Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ L +P L++ PL + S N SG+ + + Sbjct: 277 LVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336 Query: 154 ILSS 157 L+ Sbjct: 337 ALAD 340 >gi|307636734|gb|ADN79184.1| NiFe-hydrogenase metallocenter assembly protein [Helicobacter pylori 908] gi|325995320|gb|ADZ50725.1| NiFe hydrogenase metallocenter assembly protein [Helicobacter pylori 2018] gi|325996918|gb|ADZ49126.1| hydrogenase maturation protein [Helicobacter pylori 2017] Length = 750 Score = 53.9 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 36/153 (23%), Positives = 58/153 (37%), Gaps = 14/153 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 + +AL + + + G IA+ GL D+RN I RL +K RP P Sbjct: 191 NDDALLECAKDIQKGKIIALK-----GLGGFALLCDARNFKTIERLRLLKNRPL-KPFAL 244 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 D++ K+HA ++ L P+ L+ T + P N +P Sbjct: 245 MFKDLNAAKQHAFLNALECESLNSVS-API-LLARKKPDTQLAPNIAKNSPFYGVILPYT 302 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154 L++ P+ SAN S ++ K I Sbjct: 303 PLHALLLDLLDSPIVFTSANFSSLPLASDEKEI 335 >gi|331674218|ref|ZP_08374978.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli TA280] gi|331068312|gb|EGI39707.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli TA280] Length = 770 Score = 53.9 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 45/124 (36%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + A P + L P + Sbjct: 250 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 300 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ L +P L++ PL + S N SG+ + + Sbjct: 301 LVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 360 Query: 154 ILSS 157 L+ Sbjct: 361 ALAD 364 >gi|218701202|ref|YP_002408831.1| carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases [Escherichia coli IAI39] gi|218371188|emb|CAR19019.1| carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases [Escherichia coli IAI39] Length = 770 Score = 53.9 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 45/124 (36%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + A P + L P + Sbjct: 250 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 300 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ L +P L++ PL + S N SG+ + + Sbjct: 301 LVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 360 Query: 154 ILSS 157 L+ Sbjct: 361 ALAD 364 >gi|153939047|ref|YP_001391091.1| [NiFe] hydrogenase maturation protein HypF [Clostridium botulinum F str. Langeland] gi|152934943|gb|ABS40441.1| [NiFe] hydrogenase maturation protein HypF [Clostridium botulinum F str. Langeland] Length = 812 Score = 53.9 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 32/151 (21%), Positives = 52/151 (34%), Gaps = 14/151 (9%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 + A E + G +A V G+ + +N AI L KKRP PL D Sbjct: 247 IYTAVELIKKGYIVA-----VKGIGGFHLVCNGKNKKAIENLRIRKKRP-HKPLAIMCKD 300 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126 + +VK+ V L + + L+L +T + + K +P Sbjct: 301 LKIVKELCYVSKLEEQILEGT--KKPILILKKKATNILPDNISPFNKHLGVMLPYSPLHY 358 Query: 127 LIETYGH-PLAIPSANRSGQISITNVKHILS 156 L+ G + S N SG+ + Sbjct: 359 LLFKEGLDIIIATSGNVSGRPMEYKNCEAIE 389 >gi|293412067|ref|ZP_06654790.1| hydrogenase maturation protein HypF [Escherichia coli B354] gi|291468838|gb|EFF11329.1| hydrogenase maturation protein HypF [Escherichia coli B354] Length = 770 Score = 53.9 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 45/124 (36%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + A P + L P + Sbjct: 250 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 300 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ L +P L++ PL + S N SG+ + + Sbjct: 301 LVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 360 Query: 154 ILSS 157 L+ Sbjct: 361 ALAD 364 >gi|2982748|gb|AAC06379.1| similar to transcriptional regulatory protein HypF in Rhizobium leguminosarum bv. viciae, Swiss-Prot Accession Number P28156 [Methanosarcina mazei Go1] Length = 555 Score = 53.5 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 35/216 (16%), Positives = 73/216 (33%), Gaps = 19/216 (8%) Query: 10 NALRKACEFLDAGLPIAIPTETV--YG---LAVDSRNPTAIRRL-YEIKKRPAMNPLICH 63 A+ A + L G +A V +G +A ++R + L +K RP P Sbjct: 203 EAIASASDLLQEGSILA-----VKGFGGFHIACNARQEEPVNELRRRLK-RPE-QPFAVM 255 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 + + + A ++ P+T VL ++ + L +P Sbjct: 256 AKNAGVAESFADLEGAGREYLTSHR-RPIT-VLPRSEEFNLADSVSPGLHNIGVMLPYTG 313 Query: 124 TKKLI--ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLI-IDGGISKIGLESTI 180 T+ L+ + SAN G+ + + + L + + + + + T+ Sbjct: 314 TQNLLFDRVPDAVYVMTSANLPGRPMVVDNREAL-EKLKGIVDFYLLHNRVIANRNDDTV 372 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDE 216 + + + I R G E ++ +E V Sbjct: 373 IRIVNGQAAFIRRSRGYVPEPVELPFEIEASIGVGA 408 >gi|323139229|ref|ZP_08074284.1| (NiFe) hydrogenase maturation protein HypF [Methylocystis sp. ATCC 49242] gi|322395527|gb|EFX98073.1| (NiFe) hydrogenase maturation protein HypF [Methylocystis sp. ATCC 49242] Length = 761 Score = 53.5 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 75/234 (32%), Gaps = 40/234 (17%) Query: 13 RKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 + L AG +A V G+ D+RN +A+ L K R A P V+++ Sbjct: 199 EEIAAALLAGKIVA-----VKGIGGFHLMCDARNESAVNELRRRKARDA-KPFAIMVANV 252 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 + V K A + L + P+ L + D+ P L + L Sbjct: 253 ASVGKVADATDAEMTLLQTAA-RPIVL---MNRRDDVAPGVAPRLGRIGVMLAYTPLHHL 308 Query: 128 I--ETYGHP-------------LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172 I G P L SAN G + + + + +I+ Sbjct: 309 IFHAAAGAPTGKEWRVAPHDLALVATSANVGGDPIVKDNDEA-QARLASIADIIVTHDRE 367 Query: 173 KIGL--ES--TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQS 222 + +S T+V+ + R G E + + + V + ++ Sbjct: 368 IVTRVDDSVMTVVD---GAPAFLRRARGFVPEPID--LGADGPCVVGAGAHLKA 416 >gi|333001051|gb|EGK20621.1| [NiFe] hydrogenase maturation protein HypF [Shigella flexneri K-272] gi|333015446|gb|EGK34785.1| [NiFe] hydrogenase maturation protein HypF [Shigella flexneri K-227] Length = 750 Score = 53.5 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 45/124 (36%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L E K RPA PL + + + L P + Sbjct: 226 LACDARNSNAVATLRERKHRPA-KPLAVMLPVAESL------PDAARQLL--TTPAAPIV 276 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ L +P L++ PL + S N SG+ + + Sbjct: 277 LVDKKYVPELCDDIALGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336 Query: 154 ILSS 157 L+ Sbjct: 337 ALAD 340 >gi|293406203|ref|ZP_06650129.1| carbamoyltransferase hypF [Escherichia coli FVEC1412] gi|298381940|ref|ZP_06991537.1| carbamoyltransferase hypF [Escherichia coli FVEC1302] gi|291426209|gb|EFE99241.1| carbamoyltransferase hypF [Escherichia coli FVEC1412] gi|298277080|gb|EFI18596.1| carbamoyltransferase hypF [Escherichia coli FVEC1302] Length = 746 Score = 53.5 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 43/124 (34%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+ N A+ L K RPA PL + + + L P + Sbjct: 226 LACDACNSNAVATLRARKHRPA-KPLAVMLPVAEGL------PDAARQLL--TTPAAPIV 276 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ L +P L++ PL + S N SG+ + + Sbjct: 277 LVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336 Query: 154 ILSS 157 L+ Sbjct: 337 ALAD 340 >gi|170680945|ref|YP_001744859.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli SMS-3-5] gi|170518663|gb|ACB16841.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli SMS-3-5] Length = 762 Score = 53.5 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 45/124 (36%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + A P + L P + Sbjct: 242 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LSTPAAPIV 292 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ L +P L++ PL + S N SG+ + + Sbjct: 293 LVDKKYIPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 352 Query: 154 ILSS 157 L+ Sbjct: 353 ALAD 356 >gi|218706206|ref|YP_002413725.1| carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases [Escherichia coli UMN026] gi|300899949|ref|ZP_07118153.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS 198-1] gi|218433303|emb|CAR14203.1| carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases [Escherichia coli UMN026] gi|300356506|gb|EFJ72376.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS 198-1] Length = 770 Score = 53.5 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 43/124 (34%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+ N A+ L K RPA PL + + + L P + Sbjct: 250 LACDACNSNAVATLRARKHRPA-KPLAVMLPVAEGL------PDAARQLL--TTPAAPIV 300 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ L +P L++ PL + S N SG+ + + Sbjct: 301 LVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 360 Query: 154 ILSS 157 L+ Sbjct: 361 ALAD 364 >gi|261840058|gb|ACX99823.1| transcriptional regulator (hypF) [Helicobacter pylori 52] Length = 750 Score = 53.5 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 57/154 (37%), Gaps = 16/154 (10%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 + +AL + + + G IA+ GL D+RN I RL +K RP P Sbjct: 191 NDDALLECAKDIQKGKIIALK-----GLGGFALLCDARNFQTIERLRLLKNRPL-KPFAL 244 Query: 63 HVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120 D++ K+HA ++ L L P L+ T + P N +P Sbjct: 245 MFKDLNTAKQHAFLNALECESLNSASAP---ILLARKKPDTQLAPNIAKNSPFYGVILPY 301 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154 L++ P+ SAN S ++ I Sbjct: 302 TPLHALLLDLLDFPIIFTSANFSSLPLASDEDEI 335 >gi|119868218|ref|YP_938170.1| (NiFe) hydrogenase maturation protein HypF [Mycobacterium sp. KMS] gi|119694307|gb|ABL91380.1| (NiFe) hydrogenase maturation protein HypF [Mycobacterium sp. KMS] Length = 752 Score = 53.5 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 53/149 (35%), Gaps = 25/149 (16%) Query: 21 AGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75 G +A V Y LA D+ N TA+ L K+R P V D + + A Sbjct: 207 DGGVVA-----VKGIGGYHLACDAENNTAVAELRRRKQRG-DKPFAVMVPDAAAAGRIAV 260 Query: 76 VDPLSLHLAKLFWP-GPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHP 134 +D ++ HL P P+ L TT ++ N + L+ +G P Sbjct: 261 LDEVAQHLLGG--PQRPIVLAPRRTPTTVAAAVAPGNPD-LGVLLAYSPLHTLL--FGLP 315 Query: 135 --------LAIPSANRSGQISITNVKHIL 155 L + S N +G+ + + Sbjct: 316 GDEPGPQVLVMTSGNLAGEPLCYDDDDAV 344 >gi|108799103|ref|YP_639300.1| (NiFe) hydrogenase maturation protein HypF [Mycobacterium sp. MCS] gi|108769522|gb|ABG08244.1| (NiFe) hydrogenase maturation protein HypF [Mycobacterium sp. MCS] Length = 745 Score = 53.5 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 53/149 (35%), Gaps = 25/149 (16%) Query: 21 AGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75 G +A V Y LA D+ N TA+ L K+R P V D + + A Sbjct: 200 DGGVVA-----VKGIGGYHLACDAENNTAVAELRRRKQRG-DKPFAVMVPDAAAAGRIAV 253 Query: 76 VDPLSLHLAKLFWP-GPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHP 134 +D ++ HL P P+ L TT ++ N + L+ +G P Sbjct: 254 LDEVAQHLLGG--PQRPIVLAPRRTPTTVAAAVAPGNPD-LGVLLAYSPLHTLL--FGLP 308 Query: 135 --------LAIPSANRSGQISITNVKHIL 155 L + S N +G+ + + Sbjct: 309 GDEPGPQVLVMTSGNLAGEPLCYDDDDAV 337 >gi|331658817|ref|ZP_08359759.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli TA206] gi|315298802|gb|EFU58056.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS 16-3] gi|331053399|gb|EGI25428.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli TA206] Length = 750 Score = 53.5 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 45/124 (36%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + A P + L P + Sbjct: 226 LACDARNSNAVAILRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ L +P L++ PL + S N SG+ + + Sbjct: 277 LVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336 Query: 154 ILSS 157 L+ Sbjct: 337 ALAD 340 >gi|170760420|ref|YP_001787158.1| [NiFe] hydrogenase maturation protein HypF [Clostridium botulinum A3 str. Loch Maree] gi|169407409|gb|ACA55820.1| [NiFe] hydrogenase maturation protein HypF [Clostridium botulinum A3 str. Loch Maree] Length = 812 Score = 53.5 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 54/155 (34%), Gaps = 14/155 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 + N + A E + G +A V G+ + ++ AI L KKRP PL Sbjct: 243 EKNPIYTAAELIKKGYIVA-----VKGIGGFHLVCNGKDKKAIESLRIRKKRP-HKPLAI 296 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 D+ +VK+ V L + + L+L +T + + K +P Sbjct: 297 MCKDLKIVKELCYVSKLEEQILEGN--KKPILILKKKATNILSDNISPFNKYLGVMLPYS 354 Query: 123 FTKKLIETYGH-PLAIPSANRSGQISITNVKHILS 156 L+ G + S N SG+ + Sbjct: 355 PLHYLLFKEGLDIIIATSGNVSGRPMEYKNCEAIE 389 >gi|300941085|ref|ZP_07155598.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS 21-1] gi|300454180|gb|EFK17673.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS 21-1] Length = 645 Score = 53.5 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 45/124 (36%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + A P + L P + Sbjct: 250 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 300 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ L +P L++ PL + S N SG+ + + Sbjct: 301 LVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 360 Query: 154 ILSS 157 L+ Sbjct: 361 ALAD 364 >gi|191166784|ref|ZP_03028610.1| carbamoyltransferase HypF [Escherichia coli B7A] gi|193069651|ref|ZP_03050603.1| carbamoyltransferase HypF [Escherichia coli E110019] gi|190903155|gb|EDV62878.1| carbamoyltransferase HypF [Escherichia coli B7A] gi|192957014|gb|EDV87465.1| carbamoyltransferase HypF [Escherichia coli E110019] Length = 766 Score = 53.5 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 45/124 (36%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + A P + L P + Sbjct: 242 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 292 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ +L +P L++ PL + S N SG+ + + Sbjct: 293 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 352 Query: 154 ILSS 157 L Sbjct: 353 ALED 356 >gi|218696303|ref|YP_002403970.1| carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases [Escherichia coli 55989] gi|309795171|ref|ZP_07689590.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS 145-7] gi|218353035|emb|CAU98860.1| carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases [Escherichia coli 55989] gi|308121142|gb|EFO58404.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS 145-7] Length = 750 Score = 53.5 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 45/124 (36%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + A P + L P + Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ +L +P L++ PL + S N SG+ + + Sbjct: 277 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336 Query: 154 ILSS 157 L Sbjct: 337 ALED 340 >gi|284929154|ref|YP_003421676.1| (NiFe) hydrogenase maturation protein HypF [cyanobacterium UCYN-A] gi|284809613|gb|ADB95318.1| (NiFe) hydrogenase maturation protein HypF [cyanobacterium UCYN-A] Length = 761 Score = 53.5 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 34/163 (20%), Positives = 59/163 (36%), Gaps = 14/163 (8%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICHV 64 ALR+ L AG +A V GL ++RN +I +L + K RP P Sbjct: 203 EALRQCINDLKAGKIVA-----VKGLGGFQIIVNARNTNSIHKLRKYKNRP-KKPFALMY 256 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 S + V+ + L L + P+ ++L + ++ N Sbjct: 257 SSLKAVRTDCQISLLEKELL-ISSQAPI-VLLKKKNNNQNCNIAPNNPYLGVMLASTSLH 314 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 L++ PL I S N + + N K + + + L + Sbjct: 315 YLLLKELNFPLIITSGNINSEPICINEKEAV-QQLGNIVDLFL 356 >gi|182678133|ref|YP_001832279.1| (NiFe) hydrogenase maturation protein HypF [Beijerinckia indica subsp. indica ATCC 9039] gi|182634016|gb|ACB94790.1| (NiFe) hydrogenase maturation protein HypF [Beijerinckia indica subsp. indica ATCC 9039] Length = 779 Score = 53.5 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 35/200 (17%), Positives = 67/200 (33%), Gaps = 18/200 (9%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65 A A L G +A+ G+ D+ +++ L K RP PL + Sbjct: 203 AFEVALALLRCGGILALK-----GIGGYHLACDATREDSVQLLRARKHRP-TKPLAVMMR 256 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTT----DIHPLSTANLKTACFRVP- 120 D++ ++ ++ P ++++ + + P + L +P Sbjct: 257 DLATAARYCALTQEERQALVD--PSAPIVLVNRQDDSSLAPSLAPSLSPGLDRLGVLLPY 314 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L++ PL + S NRSG + L ++ L+ ++ Sbjct: 315 TPLHHLLLDALAFPLVMSSGNRSGAPQVFEDDVALRDLAEIADGWLMHDRPIARRLDDSV 374 Query: 181 VNVQCEKKVRILRPGGLEIE 200 V V K + R GL E Sbjct: 375 VMVSAGAKRVLRRGRGLAPE 394 >gi|21226879|ref|NP_632801.1| hydrogenase maturation protein [Methanosarcina mazei Go1] gi|20905184|gb|AAM30473.1| Hydrogenase maturation protein [Methanosarcina mazei Go1] Length = 772 Score = 53.5 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 35/216 (16%), Positives = 73/216 (33%), Gaps = 19/216 (8%) Query: 10 NALRKACEFLDAGLPIAIPTETV--YG---LAVDSRNPTAIRRL-YEIKKRPAMNPLICH 63 A+ A + L G +A V +G +A ++R + L +K RP P Sbjct: 203 EAIASASDLLQEGSILA-----VKGFGGFHIACNARQEEPVNELRRRLK-RPE-QPFAVM 255 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 + + + A ++ P+T VL ++ + L +P Sbjct: 256 AKNAGVAESFADLEGAGREYLTSHR-RPIT-VLPRSEEFNLADSVSPGLHNIGVMLPYTG 313 Query: 124 TKKLI--ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLI-IDGGISKIGLESTI 180 T+ L+ + SAN G+ + + + L + + + + + T+ Sbjct: 314 TQNLLFDRVPDAVYVMTSANLPGRPMVVDNREAL-EKLKGIVDFYLLHNRVIANRNDDTV 372 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDE 216 + + + I R G E ++ +E V Sbjct: 373 IRIVNGQAAFIRRSRGYVPEPVELPFEIEASIGVGA 408 >gi|317182589|dbj|BAJ60373.1| transcriptional regulator [Helicobacter pylori F57] Length = 750 Score = 53.1 bits (127), Expect = 5e-05, Method: Composition-based stats. Identities = 35/153 (22%), Positives = 57/153 (37%), Gaps = 14/153 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 + +AL + + + G IA+ GL D+RN I RL +K RP P Sbjct: 191 NDDALLECAKDIQKGKIIALK-----GLGGFALLCDARNFQTIERLRLLKNRPL-KPFAL 244 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 D++ K+HA ++ L P+ L+ T + P N +P Sbjct: 245 MFKDLNTAKQHAFLNALECESLNSTSV-PI-LLARKKPNTPLAPNIAKNSPFYGVILPYT 302 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154 L++ P+ SAN S ++ I Sbjct: 303 PLHALLLDLLDFPIVFTSANFSSLPLASDEAEI 335 >gi|315587233|gb|ADU41614.1| hydrogenase maturation protein HypF [Helicobacter pylori 35A] Length = 750 Score = 53.1 bits (127), Expect = 5e-05, Method: Composition-based stats. Identities = 35/153 (22%), Positives = 55/153 (35%), Gaps = 14/153 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 + +AL + + + G IA+ GL D+RN I RL +K RP P Sbjct: 191 NDDALLECAKDIQKGKIIALK-----GLGGFALLCDARNFQTIERLRLLKNRPL-KPFAL 244 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 D++ K+HA + L P+ L T + P N +P Sbjct: 245 MFKDLNTAKQHAFLSALECESLNS-TSAPILLACK-KPNTPLAPNIAKNSPFYGVILPYT 302 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154 L++ P+ SAN S ++ I Sbjct: 303 PLHALLLDLLDFPIVFTSANFSSLPLASDEAEI 335 >gi|320202357|gb|EFW76927.1| carbamoyltransferase HypF [Escherichia coli EC4100B] Length = 734 Score = 53.1 bits (127), Expect = 5e-05, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 45/124 (36%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + A P + L P + Sbjct: 210 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 260 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ +L +P L++ PL + S N SG+ + + Sbjct: 261 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 320 Query: 154 ILSS 157 L Sbjct: 321 ALED 324 >gi|220905586|ref|YP_002480898.1| (NiFe) hydrogenase maturation protein HypF [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869885|gb|ACL50220.1| (NiFe) hydrogenase maturation protein HypF [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 978 Score = 53.1 bits (127), Expect = 5e-05, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 39/109 (35%), Gaps = 13/109 (11%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 A+R+A L G +A GL D+RN A+ L E K RP PL Sbjct: 324 EAIRRAGRVLLDGGILAFK-----GLGGFQLACDARNERALALLRERKNRP-HKPLALMA 377 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK 113 + V+ + P L P ++ L + P +T + Sbjct: 378 DCLETVRAFCDLSPEHEALLTS--PEKPIVLCPLRTGKARGPYATNGVD 424 >gi|315231118|ref|YP_004071554.1| Ni-Fe hydrogenase metallocenter assembly HypF-like protein [Thermococcus barophilus MP] gi|315184146|gb|ADT84331.1| Ni-Fe hydrogenase metallocenter assembly HypF-like protein [Thermococcus barophilus MP] Length = 770 Score = 53.1 bits (127), Expect = 5e-05, Method: Composition-based stats. Identities = 37/217 (17%), Positives = 69/217 (31%), Gaps = 26/217 (11%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKK--RPAMNPLIC 62 + ++K E +D G +AI G+ D+ N + L K+ RP P Sbjct: 201 DPIKKTAELIDKGYIVAIK-----GIGGIHIACDATNEDVVEELR--KRILRPQ-QPFAL 252 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 D+ ++ A V + P+ + L + L T +P Sbjct: 253 MAKDLETIESFAIVSDAEKEELLSYR-KPI-VALRKKEPFPLPEALAPGLHTIGVMLPYS 310 Query: 123 FTKKLIETYGH-PL-AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L+ Y P+ + SAN G + + ++ + ++ Sbjct: 311 GIHYLLFHYSKSPVYVMTSANYPGLPMVKDNDKAFKELKDLADYFLLHNRKILNRADDSV 370 Query: 181 VNVQCEKKVRILRPGG-------LEIETLKRAISVEL 210 + K+ I R G + E + A+ EL Sbjct: 371 IRFVDGKRAVIRRSRGFVPLPIDIPFEFIGLAVGAEL 407 >gi|88811666|ref|ZP_01126920.1| hydrogenase maturation protein [Nitrococcus mobilis Nb-231] gi|88791057|gb|EAR22170.1| hydrogenase maturation protein [Nitrococcus mobilis Nb-231] Length = 781 Score = 53.1 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 57/165 (34%), Gaps = 15/165 (9%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICH 63 + + A L G +A V GL + N A+ RL + K R P Sbjct: 199 DDTIAAARRLLTQGQIVA-----VKGLGGFHLAVAADNAAAVARLRQRKGR-YHKPFALM 252 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CG 122 +I +++++ +V L + P ++L+ + +T F +P Sbjct: 253 ARNIGVIRRYCAVSAAEQALLES--PAAPIVLLEASGPESVSAAVAPGQRTLGFMLPYTP 310 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 L++ P+ + S NRS T + + ++ Sbjct: 311 LHHLLLQGLNQPIVLTSGNRSDAPQCT-DNDAARTRLAGLADYLL 354 >gi|326385676|ref|ZP_08207306.1| (NiFe) hydrogenase maturation protein HypF [Novosphingobium nitrogenifigens DSM 19370] gi|326209834|gb|EGD60621.1| (NiFe) hydrogenase maturation protein HypF [Novosphingobium nitrogenifigens DSM 19370] Length = 763 Score = 53.1 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 58/187 (31%), Gaps = 15/187 (8%) Query: 16 CEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 L G+ +AI GL D+RN A+ L K R A P + + Sbjct: 212 ARLLREGVVVAIK-----GLGGFHLACDARNAAALATLRRRKHRDA-KPFAVM-ATEAQA 264 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIE 129 + VD +L L + L + +P L++ Sbjct: 265 RALCVVDEAALALLASPAAPIVLLPCRADGGEALPDGLAPGQDHLGLMLPATPLHHLLLD 324 Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIVNVQCEKK 188 +G PL + S NRS + + + + + + L+ ++V + Sbjct: 325 AFGGPLVMTSGNRSEEPQAIDNDEA-RLRLAGIADAFLMHDRAIVNRLDDSVVALDEGGA 383 Query: 189 VRILRPG 195 +R Sbjct: 384 PVPIRRA 390 >gi|260856817|ref|YP_003230708.1| carbamoyl phosphate phosphatase HypF [Escherichia coli O26:H11 str. 11368] gi|260869385|ref|YP_003235787.1| carbamoyl phosphate phosphatase HypF [Escherichia coli O111:H- str. 11128] gi|257755466|dbj|BAI26968.1| carbamoyl phosphate phosphatase HypF [Escherichia coli O26:H11 str. 11368] gi|257765741|dbj|BAI37236.1| carbamoyl phosphate phosphatase HypF [Escherichia coli O111:H- str. 11128] gi|323154923|gb|EFZ41115.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli EPECa14] gi|323180130|gb|EFZ65682.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli 1180] Length = 750 Score = 53.1 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 47/124 (37%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L E K RPA PL + A P + L P + Sbjct: 226 LACDARNSNAVATLRERKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ +L +P L++ PL + S N SG+ + + Sbjct: 277 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336 Query: 154 ILSS 157 L+ Sbjct: 337 ALAD 340 >gi|317008723|gb|ADU79303.1| hydrogenase maturation protein HypF [Helicobacter pylori India7] Length = 750 Score = 53.1 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 58/154 (37%), Gaps = 16/154 (10%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 + +AL + + + G IA+ GL D+RN I RL +K RP P Sbjct: 191 NDDALLECAKDIQKGKIIALK-----GLGGFALLCDARNVQTIERLRLLKNRPL-KPFAL 244 Query: 63 HVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120 D++ K+HA ++ L L + P L+ T + N +P Sbjct: 245 MFKDLNSAKQHAFLNTLECESLISISAP---ILLARKKPDTQLAHNIAKNSPFYGVILPY 301 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154 L++ P+ SAN S ++ K I Sbjct: 302 TPLHALLLDLLDFPIVFTSANFSSLPLASDEKEI 335 >gi|312622662|ref|YP_004024275.1| (nife) hydrogenase maturation protein hypf [Caldicellulosiruptor kronotskyensis 2002] gi|312203129|gb|ADQ46456.1| (NiFe) hydrogenase maturation protein HypF [Caldicellulosiruptor kronotskyensis 2002] Length = 757 Score = 53.1 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 39/168 (23%), Positives = 61/168 (36%), Gaps = 25/168 (14%) Query: 14 KACEFLD-------AGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLI 61 +A E LD G +AI G+ D N T ++RL+E K+R PL Sbjct: 201 EAIELLDFVSQKILEGYIVAIK-----GIGGFHLVCDPYNETVVKRLFESKRR-EGKPLA 254 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF-RVP 120 DI +VKK+ V+ + + F ++L T +NL T R Sbjct: 255 LVAQDIEVVKKYCYVNKMEEDI---FSSQRCPIILFEKKTEHFSH-VNSNLHTLGIMRAY 310 Query: 121 CGFTKKLIETYGH-PLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 ++ G L SAN SG I + + + ++ Sbjct: 311 TPILDYILSKTGRDFLIATSANLSGIPMIIDESDAI-QKLEGICDYVL 357 >gi|237706668|ref|ZP_04537149.1| hydrogenase maturation protein HypF [Escherichia sp. 3_2_53FAA] gi|226899708|gb|EEH85967.1| hydrogenase maturation protein HypF [Escherichia sp. 3_2_53FAA] Length = 766 Score = 53.1 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + A P + L P + Sbjct: 242 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 292 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ +L +P L++ PL + S N SG+ + + Sbjct: 293 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 352 Query: 154 ILSS 157 L+ Sbjct: 353 ALAD 356 >gi|56758456|gb|AAW27368.1| unknown [Schistosoma japonicum] Length = 114 Score = 53.1 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 38/109 (34%), Gaps = 22/109 (20%) Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL---STANLKTAC 116 + + +S + + L PGP+T++L PL + Sbjct: 1 MAICLDQVSHISHWCDTKNIPTGLLSDLLPGPVTVLLPRFPDKLQDPLNCHLNPGERRVG 60 Query: 117 FRVPC-GFTKKLIETY------------------GHPLAIPSANRSGQI 146 R+P GF +KLI GHPL + SAN SGQ Sbjct: 61 IRIPDSGFIRKLISALHEQTKLSSTFGNDEYSGGGHPLVLTSANLSGQP 109 >gi|193064993|ref|ZP_03046068.1| carbamoyltransferase HypF [Escherichia coli E22] gi|192927290|gb|EDV81909.1| carbamoyltransferase HypF [Escherichia coli E22] Length = 766 Score = 53.1 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + A P + L P + Sbjct: 242 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 292 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ +L +P L++ PL + S N SG+ + + Sbjct: 293 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 352 Query: 154 ILSS 157 L+ Sbjct: 353 ALAD 356 >gi|194427873|ref|ZP_03060419.1| carbamoyltransferase HypF [Escherichia coli B171] gi|194414106|gb|EDX30382.1| carbamoyltransferase HypF [Escherichia coli B171] Length = 766 Score = 53.1 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + A P + L P + Sbjct: 242 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 292 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ +L +P L++ PL + S N SG+ + + Sbjct: 293 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 352 Query: 154 ILSS 157 L+ Sbjct: 353 ALAD 356 >gi|91212071|ref|YP_542057.1| hydrogenase maturation protein HypF [Escherichia coli UTI89] gi|91073645|gb|ABE08526.1| hydrogenase maturation protein HypF [Escherichia coli UTI89] Length = 774 Score = 53.1 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + A P + L P + Sbjct: 250 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 300 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ +L +P L++ PL + S N SG+ + + Sbjct: 301 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 360 Query: 154 ILSS 157 L+ Sbjct: 361 ALAD 364 >gi|288933899|ref|YP_003437958.1| (NiFe) hydrogenase maturation protein HypF [Klebsiella variicola At-22] gi|288888628|gb|ADC56946.1| (NiFe) hydrogenase maturation protein HypF [Klebsiella variicola At-22] Length = 744 Score = 52.8 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 55/159 (34%), Gaps = 20/159 (12%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59 ++ AL+ A L AG +AI G+ D+ NP A+ L K RPA P Sbjct: 191 TLNSEAALQAAITRLAAGDIVAIK-----GIGGFHLACDAGNPAAVATLRARKHRPA-KP 244 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 L + A + + L P +++ + + L + Sbjct: 245 LAVMLPSA------AGLPADAAALMGS--PAAPIVLIAKAQVSGLCDKIAPGLAEVGVML 296 Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSS 157 P L++ P+ + S N SG+ + L+ Sbjct: 297 PSNPLQHLLLQALARPIVMTSGNLSGRPPALSNAQALND 335 >gi|216576|dbj|BAA03315.1| HYDA [Escherichia coli] Length = 749 Score = 52.8 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + A P + L P + Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ +L +P L++ PL + S N SG+ + + Sbjct: 277 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336 Query: 154 ILSS 157 L+ Sbjct: 337 ALAD 340 >gi|331678684|ref|ZP_08379358.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli H591] gi|331073514|gb|EGI44835.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli H591] Length = 774 Score = 52.8 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 46/124 (37%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN TA+ L K RPA PL + A P + L P + Sbjct: 250 LACDARNSTAVATLRARKHRPA-KPLAV-------ILPVAEGLPDAARQL-LTTPAAPIV 300 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ L +P L++ PL + S N SG+ + + Sbjct: 301 LVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 360 Query: 154 ILSS 157 L+ Sbjct: 361 ALAD 364 >gi|218555254|ref|YP_002388167.1| carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases [Escherichia coli IAI1] gi|260845354|ref|YP_003223132.1| carbamoyl phosphate phosphatase HypF [Escherichia coli O103:H2 str. 12009] gi|307314403|ref|ZP_07594008.1| (NiFe) hydrogenase maturation protein HypF [Escherichia coli W] gi|218362022|emb|CAQ99629.1| carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases [Escherichia coli IAI1] gi|257760501|dbj|BAI31998.1| carbamoyl phosphate phosphatase HypF [Escherichia coli O103:H2 str. 12009] gi|306905971|gb|EFN36492.1| (NiFe) hydrogenase maturation protein HypF [Escherichia coli W] gi|315061988|gb|ADT76315.1| carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases [Escherichia coli W] gi|323377430|gb|ADX49698.1| (NiFe) hydrogenase maturation protein HypF [Escherichia coli KO11] Length = 750 Score = 52.8 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + A P + L P + Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ +L +P L++ PL + S N SG+ + + Sbjct: 277 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336 Query: 154 ILSS 157 L+ Sbjct: 337 ALAD 340 >gi|308062917|gb|ADO04804.1| transcriptional regulator (hypF) [Helicobacter pylori Sat464] Length = 757 Score = 52.8 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 35/153 (22%), Positives = 57/153 (37%), Gaps = 14/153 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 + +AL + + + G IA+ GL D+RN I RL +K RP P Sbjct: 198 NDDALLECAKDIQKGKIIALK-----GLGGFALLCDARNCQTIERLRLLKNRPL-KPFAL 251 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 D++ K+HA ++ L P+ L+ T + P N +P Sbjct: 252 MFKDLNTAKQHAFLNALECESLNS-TSAPI-LLARKKPDTQLAPNIAKNSPFYGVILPYT 309 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154 L++ P+ SAN S ++ I Sbjct: 310 PLHALLLDLLDFPIIFTSANFSSLPLASDEAEI 342 >gi|300930568|ref|ZP_07145961.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS 187-1] gi|300461560|gb|EFK25053.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS 187-1] Length = 750 Score = 52.8 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 45/124 (36%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + + + L P + Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVMLPVAEGL------PDAARQLL--TTPAAPIV 276 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ +L +P L++ PL + S N SG+ + + Sbjct: 277 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336 Query: 154 ILSS 157 L+ Sbjct: 337 ALAD 340 >gi|323935733|gb|EGB32047.1| hydrogenase maturation protein HypF [Escherichia coli E1520] Length = 750 Score = 52.8 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + A P + L P + Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ +L +P L++ PL + S N SG+ + + Sbjct: 277 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336 Query: 154 ILSS 157 L+ Sbjct: 337 ALAD 340 >gi|323188876|gb|EFZ74161.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli RN587/1] Length = 750 Score = 52.8 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + A P + L P + Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ +L +P L++ PL + S N SG+ + + Sbjct: 277 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336 Query: 154 ILSS 157 L+ Sbjct: 337 ALAD 340 >gi|222034405|emb|CAP77147.1| Carbamoyltransferase hypF [Escherichia coli LF82] gi|312947240|gb|ADR28067.1| carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases [Escherichia coli O83:H1 str. NRG 857C] Length = 750 Score = 52.8 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + A P + L P + Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ +L +P L++ PL + S N SG+ + + Sbjct: 277 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336 Query: 154 ILSS 157 L+ Sbjct: 337 ALAD 340 >gi|117624943|ref|YP_853931.1| hydrogenase maturation protein HypF [Escherichia coli APEC O1] gi|218559700|ref|YP_002392613.1| carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases [Escherichia coli S88] gi|306812410|ref|ZP_07446608.1| hydrogenase maturation protein [Escherichia coli NC101] gi|115514067|gb|ABJ02142.1| hydrogenase maturation protein HypF [Escherichia coli APEC O1] gi|218366469|emb|CAR04221.1| carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases [Escherichia coli S88] gi|294492182|gb|ADE90938.1| carbamoyltransferase HypF [Escherichia coli IHE3034] gi|305854448|gb|EFM54886.1| hydrogenase maturation protein [Escherichia coli NC101] gi|307625719|gb|ADN70023.1| hydrogenase maturation protein [Escherichia coli UM146] gi|323951070|gb|EGB46946.1| hydrogenase maturation protein HypF [Escherichia coli H252] gi|323957078|gb|EGB52803.1| hydrogenase maturation protein HypF [Escherichia coli H263] Length = 750 Score = 52.8 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + A P + L P + Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ +L +P L++ PL + S N SG+ + + Sbjct: 277 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336 Query: 154 ILSS 157 L+ Sbjct: 337 ALAD 340 >gi|324119961|gb|EGC13839.1| hydrogenase maturation protein HypF [Escherichia coli E1167] Length = 750 Score = 52.8 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + A P + L P + Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ +L +P L++ PL + S N SG+ + + Sbjct: 277 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336 Query: 154 ILSS 157 L+ Sbjct: 337 ALAD 340 >gi|256024781|ref|ZP_05438646.1| carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases [Escherichia sp. 4_1_40B] Length = 750 Score = 52.8 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + A P + L P + Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ +L +P L++ PL + S N SG+ + + Sbjct: 277 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336 Query: 154 ILSS 157 L+ Sbjct: 337 ALAD 340 >gi|331643395|ref|ZP_08344526.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli H736] gi|331036866|gb|EGI09090.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli H736] Length = 774 Score = 52.8 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + A P + L P + Sbjct: 250 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 300 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ +L +P L++ PL + S N SG+ + + Sbjct: 301 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 360 Query: 154 ILSS 157 L+ Sbjct: 361 ALAD 364 >gi|194438979|ref|ZP_03071063.1| carbamoyltransferase HypF [Escherichia coli 101-1] gi|194422100|gb|EDX38103.1| carbamoyltransferase HypF [Escherichia coli 101-1] Length = 766 Score = 52.8 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 45/124 (36%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + + + L P + Sbjct: 242 LACDARNSNAVATLRARKHRPA-KPLAVMLPVAEGL------PDAARQLL--TTPAAPIV 292 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ +L +P L++ PL + S N SG+ + + Sbjct: 293 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 352 Query: 154 ILSS 157 L+ Sbjct: 353 ALAD 356 >gi|317181066|dbj|BAJ58852.1| transcriptional regulator [Helicobacter pylori F32] Length = 750 Score = 52.8 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 57/154 (37%), Gaps = 16/154 (10%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 + +AL + + + G IA+ GL D+RN I RL +K RP P Sbjct: 191 NDDALLECAKDIQKGKIIALK-----GLGGFALLCDARNFQTIERLRLLKNRPL-KPFAL 244 Query: 63 HVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120 +++ K+HA ++ L L P L+ T + P N +P Sbjct: 245 MFKNLNTAKQHAFLNELECESLNSASAP---ILLARKKPDTQLAPNIAKNSPFYGVILPY 301 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154 L++ P+ SAN S ++ I Sbjct: 302 TPLHALLLDLLDFPIIFTSANFSSLPLASDEDEI 335 >gi|300954949|ref|ZP_07167363.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS 175-1] gi|300318113|gb|EFJ67897.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS 175-1] Length = 761 Score = 52.8 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + A P + L P + Sbjct: 237 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 287 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ +L +P L++ PL + S N SG+ + + Sbjct: 288 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 347 Query: 154 ILSS 157 L+ Sbjct: 348 ALAD 351 >gi|209920151|ref|YP_002294235.1| transcriptional regulator [Escherichia coli SE11] gi|209913410|dbj|BAG78484.1| transcriptional regulator [Escherichia coli SE11] gi|324017064|gb|EGB86283.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS 117-3] Length = 750 Score = 52.8 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + A P + L P + Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ +L +P L++ PL + S N SG+ + + Sbjct: 277 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336 Query: 154 ILSS 157 L+ Sbjct: 337 ALAD 340 >gi|115523264|ref|YP_780175.1| (NiFe) hydrogenase maturation protein HypF [Rhodopseudomonas palustris BisA53] gi|115517211|gb|ABJ05195.1| (NiFe) hydrogenase maturation protein HypF [Rhodopseudomonas palustris BisA53] Length = 751 Score = 52.8 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 55/171 (32%), Gaps = 23/171 (13%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + + L AG +A+ + Y L D+RN A+ L K R A P V+ + + Sbjct: 198 VAEIVARLRAGAIVALKSLGGYHLLCDARNEAAVVELRRRKGRDA-KPFAVMVASEATLD 256 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI--E 129 + L P+ L L S + P L +P L+ E Sbjct: 257 GIVEANAAERALLTSV-ERPIVL---LKSRGALAPSVAPALAHVGVMLPYTPLHHLLFHE 312 Query: 130 TYGHP-------------LAIPSANRSGQISITNVKHILSSSICKEIPLII 167 G P L SAN G + + + + LI+ Sbjct: 313 AAGAPEGRAWQQAPVDLVLVATSANCGGDPIVIDDA---ARKLAGIADLIV 360 >gi|254037751|ref|ZP_04871809.1| carbamoyltransferase HypF [Escherichia sp. 1_1_43] gi|226839375|gb|EEH71396.1| carbamoyltransferase HypF [Escherichia sp. 1_1_43] Length = 774 Score = 52.8 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + A P + L P + Sbjct: 250 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 300 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ +L +P L++ PL + S N SG+ + + Sbjct: 301 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 360 Query: 154 ILSS 157 L+ Sbjct: 361 ALAD 364 >gi|16130619|ref|NP_417192.1| carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases [Escherichia coli str. K-12 substr. MG1655] gi|89109499|ref|AP_003279.1| carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases [Escherichia coli str. K-12 substr. W3110] gi|170082288|ref|YP_001731608.1| carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases [Escherichia coli str. K-12 substr. DH10B] gi|238901849|ref|YP_002927645.1| carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases [Escherichia coli BW2952] gi|300947012|ref|ZP_07161237.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS 116-1] gi|301645310|ref|ZP_07245259.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS 146-1] gi|307139399|ref|ZP_07498755.1| hydrogenase maturation protein [Escherichia coli H736] gi|2506575|sp|P30131|HYPF_ECOLI RecName: Full=Carbamoyltransferase hypF; AltName: Full=Carbamoyl phosphate-converting enzyme hypF; AltName: Full=[NiFe]-hydrogenase maturation factor hypF; Short=Hydrogenase maturation protein hypF gi|2367152|gb|AAC75754.1| carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases [Escherichia coli str. K-12 substr. MG1655] gi|85675533|dbj|BAE76789.1| carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases [Escherichia coli str. K12 substr. W3110] gi|169890123|gb|ACB03830.1| carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases [Escherichia coli str. K-12 substr. DH10B] gi|238860102|gb|ACR62100.1| carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases [Escherichia coli BW2952] gi|260448238|gb|ACX38660.1| (NiFe) hydrogenase maturation protein HypF [Escherichia coli DH1] gi|300453353|gb|EFK16973.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS 116-1] gi|301076403|gb|EFK91209.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS 146-1] gi|315137319|dbj|BAJ44478.1| carbamoyl phosphate phosphatase and maturationprotein for [NiFe] hydrogenases [Escherichia coli DH1] gi|315615097|gb|EFU95734.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli 3431] Length = 750 Score = 52.8 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + A P + L P + Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ +L +P L++ PL + S N SG+ + + Sbjct: 277 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336 Query: 154 ILSS 157 L+ Sbjct: 337 ALAD 340 >gi|253772433|ref|YP_003035264.1| (NiFe) hydrogenase maturation protein HypF [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162643|ref|YP_003045751.1| carbamoyl phosphate phosphatase and maturation protein [Escherichia coli B str. REL606] gi|242378269|emb|CAQ33044.1| hydrogenase maturation protein, carbamoyltransferase [Escherichia coli BL21(DE3)] gi|253323477|gb|ACT28079.1| (NiFe) hydrogenase maturation protein HypF [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974544|gb|ACT40215.1| carbamoyl phosphate phosphatase and maturation protein [Escherichia coli B str. REL606] gi|253978711|gb|ACT44381.1| carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases [Escherichia coli BL21(DE3)] gi|323960629|gb|EGB56255.1| hydrogenase maturation protein HypF [Escherichia coli H489] Length = 750 Score = 52.8 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 45/124 (36%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + + + L P + Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVMLPVAEGL------PDAARQLL--TTPAAPIV 276 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ +L +P L++ PL + S N SG+ + + Sbjct: 277 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336 Query: 154 ILSS 157 L+ Sbjct: 337 ALAD 340 >gi|108562469|ref|YP_626785.1| transcriptional regulator [Helicobacter pylori HPAG1] gi|107836242|gb|ABF84111.1| transcriptional regulator [Helicobacter pylori HPAG1] Length = 769 Score = 52.8 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 59/154 (38%), Gaps = 16/154 (10%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 + +AL + + + G IA+ GL D+RN I RL +K RP P Sbjct: 210 NDDALLECAKDIQKGKIIALK-----GLGGFALLCDARNFQTIERLRLLKNRPL-KPFAL 263 Query: 63 HVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120 D++ VK+HA ++ L L+ + P L+ T + P N +P Sbjct: 264 MFKDLNSVKQHAFLNALECESLSSISAP---ILLARKKPDTQLAPNIAKNSSFYGVILPY 320 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154 L++ P+ SAN S + I Sbjct: 321 TPLHALLLDLLDFPIVFTSANFSSLPLANDEAEI 354 >gi|332280634|ref|ZP_08393047.1| hydrogenase maturation protein HypF [Shigella sp. D9] gi|332102986|gb|EGJ06332.1| hydrogenase maturation protein HypF [Shigella sp. D9] Length = 766 Score = 52.8 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 46/124 (37%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN TA+ L K RPA PL + A P + L P + Sbjct: 242 LACDARNSTAVATLRARKHRPA-KPLAV-------ILPVAEGLPDAARQL-LTTPAAPIV 292 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ L +P L++ PL + S N SG+ + + Sbjct: 293 LVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 352 Query: 154 ILSS 157 L+ Sbjct: 353 ALAD 356 >gi|317033932|ref|XP_001395669.2| expressed protein [Aspergillus niger CBS 513.88] Length = 257 Score = 52.8 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 63/177 (35%), Gaps = 24/177 (13%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTA-IRRLYEIKKRPAMNPLICHVSDISMVK 71 ++ + L G + IPT+ Y L + A +++++ K R + I + Sbjct: 20 KQTYDTLKNGGVVIIPTDVGYAL---LTSTQAGVQQIFSAKDRREGHN-IGIIGTYKQHY 75 Query: 72 KHASVDPLSLHLAKLFWP--GPLTLVLDLLSTTDIHPLSTA----------NLKTACFRV 119 + + + ++ + ++ T ++HP A T V Sbjct: 76 EIHVLSEAKFEMTRVLTEDMAMIVGIIAKYDTENLHPRLAALDPATLSQVTKGDTVSIAV 135 Query: 120 PC-GFTKKLIETY-----GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 P F ++L G + SAN +GQ V+ + + + L++D G Sbjct: 136 PEGPFLRELGRLCDDDPTGMLMFGTSANLTGQGQRFRVED-IEPKVINAVDLVVDYG 191 >gi|323183235|gb|EFZ68632.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli 1357] Length = 750 Score = 52.8 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + A P + L P + Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ +L +P L++ PL + S N SG+ + + Sbjct: 277 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336 Query: 154 ILSS 157 L+ Sbjct: 337 ALAD 340 >gi|300815885|ref|ZP_07096109.1| hypothetical protein gi|300820486|ref|ZP_07100637.1| hypothetical protein gi|331669444|ref|ZP_08370290.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli TA271] gi|300526750|gb|EFK47819.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS 119-7] gi|300531814|gb|EFK52876.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS 107-1] gi|331063112|gb|EGI35025.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli TA271] Length = 750 Score = 52.8 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 46/124 (37%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN TA+ L K RPA PL + A P + L P + Sbjct: 226 LACDARNSTAVATLRARKHRPA-KPLAV-------ILPVAEGLPDAARQL-LTTPAAPIV 276 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ L +P L++ PL + S N SG+ + + Sbjct: 277 LVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336 Query: 154 ILSS 157 L+ Sbjct: 337 ALAD 340 >gi|882605|gb|AAA69222.1| CG Site No. 18232; alternate gene name hypF [Escherichia coli str. K-12 substr. MG1655] Length = 750 Score = 52.8 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + A P + L P + Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ +L +P L++ PL + S N SG+ + + Sbjct: 277 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336 Query: 154 ILSS 157 L+ Sbjct: 337 ALAD 340 >gi|323941458|gb|EGB37641.1| hydrogenase maturation protein HypF [Escherichia coli E482] Length = 750 Score = 52.8 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 45/124 (36%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + + + L P + Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVMLPVAEGL------PDAARQLL--TTPAAPIV 276 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ +L +P L++ PL + S N SG+ + + Sbjct: 277 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336 Query: 154 ILSS 157 L+ Sbjct: 337 ALAD 340 >gi|309703071|emb|CBJ02403.1| hydrogenase maturation protein [Escherichia coli ETEC H10407] Length = 750 Score = 52.8 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + A P + L P + Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ +L +P L++ PL + S N SG+ + + Sbjct: 277 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336 Query: 154 ILSS 157 L+ Sbjct: 337 ALAD 340 >gi|288932160|ref|YP_003436220.1| (NiFe) hydrogenase maturation protein HypF [Ferroglobus placidus DSM 10642] gi|288894408|gb|ADC65945.1| (NiFe) hydrogenase maturation protein HypF [Ferroglobus placidus DSM 10642] Length = 745 Score = 52.8 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 36/206 (17%), Positives = 74/206 (35%), Gaps = 33/206 (16%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 A+++A +D+G +AI G+ + N + +L +I +RP P V Sbjct: 192 EAVKEAARMIDSGSFVAIK-----GIGGIHLSCLTENEI-VWKLRKILRRPQ-QPFAVMV 244 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 DI K A + + K F P+ + + + P L T +P Sbjct: 245 RDIEAAKNLAELSEEEIEELKSFR-RPILVCKKRVDLEAVAP----KLDTIGIMLPYTPL 299 Query: 125 KKLIETY--GHPLAIPSANRSGQISITNVKHI---LSSSICK--EIPLIIDGGISKIGLE 177 ++ + + + SAN + T+ + + + + I +D Sbjct: 300 HYILFKFLKAEAVVMTSANFPSEPMATSFEELKVPYDAFLNHNMRIANRVDD-------- 351 Query: 178 STIVNVQCEKKVRILRPGGLEIETLK 203 ++V +++ I R G E ++ Sbjct: 352 -SVVKFVNGRRMIIRRSRGFVPEPIE 376 >gi|256019511|ref|ZP_05433376.1| transcriptional regulatory protein [Shigella sp. D9] Length = 750 Score = 52.8 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 46/124 (37%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN TA+ L K RPA PL + A P + L P + Sbjct: 226 LACDARNSTAVATLRARKHRPA-KPLAV-------ILPVAEGLPDAARQL-LTTPAAPIV 276 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ L +P L++ PL + S N SG+ + + Sbjct: 277 LVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336 Query: 154 ILSS 157 L+ Sbjct: 337 ALAD 340 >gi|110642832|ref|YP_670562.1| hydrogenase maturation protein HypF [Escherichia coli 536] gi|191171445|ref|ZP_03032994.1| carbamoyltransferase HypF [Escherichia coli F11] gi|300975055|ref|ZP_07172856.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS 200-1] gi|110344424|gb|ABG70661.1| hydrogenase maturation protein HypF [Escherichia coli 536] gi|190908379|gb|EDV67969.1| carbamoyltransferase HypF [Escherichia coli F11] gi|300308823|gb|EFJ63343.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS 200-1] Length = 750 Score = 52.8 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + A P + L P + Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ +L +P L++ PL + S N SG+ + + Sbjct: 277 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336 Query: 154 ILSS 157 L+ Sbjct: 337 ALAD 340 >gi|331664263|ref|ZP_08365169.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli TA143] gi|331058194|gb|EGI30175.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli TA143] Length = 750 Score = 52.8 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + A P + L P + Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ +L +P L++ PL + S N SG+ + + Sbjct: 277 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336 Query: 154 ILSS 157 L+ Sbjct: 337 ALAD 340 >gi|194432970|ref|ZP_03065253.1| carbamoyltransferase HypF [Shigella dysenteriae 1012] gi|194418697|gb|EDX34783.1| carbamoyltransferase HypF [Shigella dysenteriae 1012] Length = 774 Score = 52.8 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + A P + L P + Sbjct: 250 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 300 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ +L +P L++ PL + S N SG+ + + Sbjct: 301 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 360 Query: 154 ILSS 157 L+ Sbjct: 361 ALAD 364 >gi|188495655|ref|ZP_03002925.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli 53638] gi|312973079|ref|ZP_07787252.1| hydrogenase maturation protein HypF [Escherichia coli 1827-70] gi|188490854|gb|EDU65957.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli 53638] gi|310333021|gb|EFQ00235.1| hydrogenase maturation protein HypF [Escherichia coli 1827-70] gi|332344592|gb|AEE57926.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli UMNK88] Length = 750 Score = 52.8 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + A P + L P + Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ +L +P L++ PL + S N SG+ + + Sbjct: 277 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336 Query: 154 ILSS 157 L+ Sbjct: 337 ALAD 340 >gi|324005742|gb|EGB74961.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS 57-2] Length = 565 Score = 52.8 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 47/126 (37%), Gaps = 10/126 (7%) Query: 33 YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPL 92 Y LA D+RN A+ L K RPA PL + A P + L P Sbjct: 242 YHLACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAP 292 Query: 93 TLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNV 151 +++D ++ +L +P L++ PL + S N SG+ + Sbjct: 293 IVLVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISN 352 Query: 152 KHILSS 157 + L+ Sbjct: 353 EQALAD 358 >gi|324013700|gb|EGB82919.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS 60-1] Length = 765 Score = 52.8 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + A P + L P + Sbjct: 241 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 291 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ +L +P L++ PL + S N SG+ + + Sbjct: 292 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 351 Query: 154 ILSS 157 L+ Sbjct: 352 ALAD 355 >gi|218690834|ref|YP_002399046.1| carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases [Escherichia coli ED1a] gi|218428398|emb|CAR09324.2| carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases [Escherichia coli ED1a] Length = 750 Score = 52.8 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + A P + L P + Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ +L +P L++ PL + S N SG+ + + Sbjct: 277 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336 Query: 154 ILSS 157 L+ Sbjct: 337 ALAD 340 >gi|206576597|ref|YP_002236943.1| carbamoyltransferase HypF [Klebsiella pneumoniae 342] gi|206565655|gb|ACI07431.1| carbamoyltransferase HypF [Klebsiella pneumoniae 342] Length = 744 Score = 52.8 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 55/159 (34%), Gaps = 20/159 (12%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59 ++ AL+ A L AG +AI G+ D+ NP A+ L K RPA P Sbjct: 191 TLNSEAALQAAITRLAAGDIVAIK-----GIGGFHLACDAGNPAAVATLRARKHRPA-KP 244 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 L + A + + L P +++ + + L + Sbjct: 245 LAVMLPSA------AGLPADAAALMGS--PAAPIVLIAKAQVSGLCDEIAPGLAEVGVML 296 Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSS 157 P L++ P+ + S N SG+ + L+ Sbjct: 297 PSNPLQHLLLQALARPIVMTSGNLSGRPPALSNAQALND 335 >gi|320186498|gb|EFW61226.1| NiFe hydrogenase metallocenter assembly protein HypF [Shigella flexneri CDC 796-83] Length = 766 Score = 52.8 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + A P + L P + Sbjct: 242 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 292 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ +L +P L++ PL + S N SG+ + + Sbjct: 293 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 352 Query: 154 ILSS 157 L+ Sbjct: 353 ALAD 356 >gi|187730350|ref|YP_001881540.1| carbamoyltransferase HypF [Shigella boydii CDC 3083-94] gi|187427342|gb|ACD06616.1| carbamoyltransferase HypF [Shigella boydii CDC 3083-94] Length = 750 Score = 52.8 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + A P + L P + Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ +L +P L++ PL + S N SG+ + + Sbjct: 277 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336 Query: 154 ILSS 157 L+ Sbjct: 337 ALAD 340 >gi|300924239|ref|ZP_07140225.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS 182-1] gi|300419538|gb|EFK02849.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS 182-1] Length = 750 Score = 52.8 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + A P + L P + Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ +L +P L++ PL + S N SG+ + + Sbjct: 277 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336 Query: 154 ILSS 157 L+ Sbjct: 337 ALAD 340 >gi|308061347|gb|ADO03235.1| transcriptional regulator (hypF) [Helicobacter pylori Cuz20] Length = 750 Score = 52.8 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 56/154 (36%), Gaps = 16/154 (10%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 + +AL + + + G IA+ GL D+RN I RL +K RP P Sbjct: 191 NDDALLECAKDIQKGKIIALK-----GLGGFALLCDARNFQTIERLRLLKNRPL-KPFAL 244 Query: 63 HVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120 D++ K+HA + L L P L+ T + P N +P Sbjct: 245 MFKDLNTAKQHAFLSALECESLNSTSTP---ILLARKKPDTQLAPNIAKNSPFYGVILPY 301 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154 L++ P+ SAN S ++ I Sbjct: 302 TPLHALLLDLLDFPIIFTSANFSSLPLASDEAEI 335 >gi|301326263|ref|ZP_07219639.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS 78-1] gi|300847003|gb|EFK74763.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS 78-1] Length = 763 Score = 52.8 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + A P + L P + Sbjct: 239 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 289 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ +L +P L++ PL + S N SG+ + + Sbjct: 290 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 349 Query: 154 ILSS 157 L+ Sbjct: 350 ALAD 353 >gi|82545213|ref|YP_409160.1| transcriptional regulatory protein [Shigella boydii Sb227] gi|81246624|gb|ABB67332.1| transcriptional regulatory protein [Shigella boydii Sb227] gi|332091888|gb|EGI96966.1| [NiFe] hydrogenase maturation protein HypF [Shigella boydii 3594-74] Length = 750 Score = 52.8 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + A P + L P + Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ +L +P L++ PL + S N SG+ + + Sbjct: 277 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336 Query: 154 ILSS 157 L+ Sbjct: 337 ALAD 340 >gi|157156292|ref|YP_001464020.1| carbamoyltransferase HypF [Escherichia coli E24377A] gi|157078322|gb|ABV18030.1| carbamoyltransferase HypF [Escherichia coli E24377A] Length = 750 Score = 52.8 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + A P + L P + Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ +L +P L++ PL + S N SG+ + + Sbjct: 277 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336 Query: 154 ILSS 157 L+ Sbjct: 337 ALAD 340 >gi|320180868|gb|EFW55791.1| carbamoyltransferase HypF [Shigella boydii ATCC 9905] gi|332087430|gb|EGI92558.1| [NiFe] hydrogenase maturation protein HypF [Shigella boydii 5216-82] gi|332088635|gb|EGI93748.1| [NiFe] hydrogenase maturation protein HypF [Shigella dysenteriae 155-74] Length = 734 Score = 52.8 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + A P + L P + Sbjct: 210 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 260 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ +L +P L++ PL + S N SG+ + + Sbjct: 261 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 320 Query: 154 ILSS 157 L+ Sbjct: 321 ALAD 324 >gi|323173005|gb|EFZ58636.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli LT-68] Length = 750 Score = 52.4 bits (125), Expect = 8e-05, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + A P + L P + Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ +L +P L++ PL + S N SG+ + + Sbjct: 277 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336 Query: 154 ILSS 157 L+ Sbjct: 337 ALAD 340 >gi|208434018|ref|YP_002265684.1| transcriptional regulator [Helicobacter pylori G27] gi|208431947|gb|ACI26818.1| transcriptional regulator [Helicobacter pylori G27] Length = 750 Score = 52.4 bits (125), Expect = 8e-05, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 59/154 (38%), Gaps = 16/154 (10%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 + +AL + + + G IA+ GL D+RN I RL +K RP P Sbjct: 191 NDDALLECVKDIQKGKIIALK-----GLGGFALLCDARNFQTIERLRLLKNRPL-KPFAL 244 Query: 63 HVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120 D++ K+HA ++ L+ + P L+ T + P N +P Sbjct: 245 MFKDLNSAKQHAFLNASECESLSSISAP---ILLARKKPDTQLAPNIAKNSPFYGVILPY 301 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154 L++ P+ SAN S ++ K I Sbjct: 302 TPLHALLLDLLDFPIVFTSANFSSLPLASDEKEI 335 >gi|74313276|ref|YP_311695.1| transcriptional regulatory protein [Shigella sonnei Ss046] gi|73856753|gb|AAZ89460.1| transcriptional regulatory protein [Shigella sonnei Ss046] Length = 750 Score = 52.4 bits (125), Expect = 8e-05, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + A P + L P + Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ +L +P L++ PL + S N SG+ + + Sbjct: 277 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336 Query: 154 ILSS 157 L+ Sbjct: 337 ALAD 340 >gi|297521747|ref|ZP_06940133.1| hydrogenase maturation protein [Escherichia coli OP50] Length = 644 Score = 52.4 bits (125), Expect = 9e-05, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 45/124 (36%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + + + L P + Sbjct: 141 LACDARNSNAVATLRARKHRPA-KPLAVMLPVAEGL------PDAARQLL--TTPAAPIV 191 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ +L +P L++ PL + S N SG+ + + Sbjct: 192 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 251 Query: 154 ILSS 157 L+ Sbjct: 252 ALAD 255 >gi|170019042|ref|YP_001723996.1| (NiFe) hydrogenase maturation protein HypF [Escherichia coli ATCC 8739] gi|169753970|gb|ACA76669.1| (NiFe) hydrogenase maturation protein HypF [Escherichia coli ATCC 8739] Length = 750 Score = 52.4 bits (125), Expect = 9e-05, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 46/124 (37%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + A P + L P + Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ +L +P L++ PL + S N SG+ + K Sbjct: 277 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNKQ 336 Query: 154 ILSS 157 L+ Sbjct: 337 ALAD 340 >gi|254166713|ref|ZP_04873567.1| (NiFe) hydrogenase maturation protein HypF [Aciduliprofundum boonei T469] gi|289596358|ref|YP_003483054.1| (NiFe) hydrogenase maturation protein HypF [Aciduliprofundum boonei T469] gi|197624323|gb|EDY36884.1| (NiFe) hydrogenase maturation protein HypF [Aciduliprofundum boonei T469] gi|289534145|gb|ADD08492.1| (NiFe) hydrogenase maturation protein HypF [Aciduliprofundum boonei T469] Length = 766 Score = 52.4 bits (125), Expect = 9e-05, Method: Composition-based stats. Identities = 36/196 (18%), Positives = 65/196 (33%), Gaps = 24/196 (12%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMN--PLICHV 64 L+ A +D G IAI G+ D+RN + E++KR P Sbjct: 203 LKNAAVLIDKGYIIAIK-----GIGGFHIACDARNDETVG---ELRKRIRRKAQPFAIMA 254 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP---C 121 D++ +++ A +D + P+TL L + + L T +P Sbjct: 255 RDLNTIEEFAIIDDEEKEEINSYR-RPITL-LKKRDPFPLPDNLSPGLHTIGVMLPYTGL 312 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTI 180 + + SAN I + I I + + + ++ ++ Sbjct: 313 HYILFHHSQSDVYVM-TSANYPDFPMIKDNDKI--QEIKDAVDYFLIHNRRIVNRVDDSV 369 Query: 181 VNVQCEKKVRILRPGG 196 V K+ I R G Sbjct: 370 VRFVDGKRAVIRRSRG 385 >gi|323167116|gb|EFZ52834.1| [NiFe] hydrogenase maturation protein HypF [Shigella sonnei 53G] Length = 750 Score = 52.4 bits (125), Expect = 9e-05, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + A P + L P + Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ +L +P L++ PL + S N SG+ + + Sbjct: 277 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336 Query: 154 ILSS 157 L+ Sbjct: 337 ALAD 340 >gi|226949077|ref|YP_002804168.1| [NiFe] hydrogenase maturation protein HypF [Clostridium botulinum A2 str. Kyoto] gi|226843898|gb|ACO86564.1| [NiFe] hydrogenase maturation protein HypF [Clostridium botulinum A2 str. Kyoto] Length = 812 Score = 52.4 bits (125), Expect = 9e-05, Method: Composition-based stats. Identities = 32/151 (21%), Positives = 52/151 (34%), Gaps = 14/151 (9%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 + A E + G +A V G+ + +N AI L KKRP PL D Sbjct: 247 IYTAIELIKKGYIVA-----VKGIGGFHLVCNGKNKKAIENLRIRKKRP-HKPLAIMCKD 300 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126 + +VK+ V L + + L+L +T + + K +P Sbjct: 301 LKIVKELCYVSKLEEQILEGT--KKPILILKKKATNILPDNISPFNKHLGVMLPYSPLHY 358 Query: 127 LIETYGH-PLAIPSANRSGQISITNVKHILS 156 L+ G + S N SG+ + Sbjct: 359 LLFKEGLDIIIATSGNVSGRPMEYKNCEAIE 389 >gi|315289229|gb|EFU48624.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS 110-3] Length = 574 Score = 52.4 bits (125), Expect = 9e-05, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + A P + L P + Sbjct: 250 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 300 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ +L +P L++ PL + S N SG+ + + Sbjct: 301 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 360 Query: 154 ILSS 157 L+ Sbjct: 361 ALAD 364 >gi|301027542|ref|ZP_07190878.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS 196-1] gi|299879294|gb|EFI87505.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS 196-1] Length = 539 Score = 52.4 bits (125), Expect = 9e-05, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + A P + L P + Sbjct: 15 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 65 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ +L +P L++ PL + S N SG+ + + Sbjct: 66 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 125 Query: 154 ILSS 157 L+ Sbjct: 126 ALAD 129 >gi|120601360|ref|YP_965760.1| (NiFe) hydrogenase maturation protein HypF [Desulfovibrio vulgaris DP4] gi|120561589|gb|ABM27333.1| (NiFe) hydrogenase maturation protein HypF [Desulfovibrio vulgaris DP4] Length = 792 Score = 52.4 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84 LA D+ + A+ L E K+RP PL V D+ V++ A+ P L Sbjct: 237 LACDATDDAAVTTLRERKRRP-HKPLAVMVPDMDTVRRIAAPTPDEERLI 285 >gi|328954542|ref|YP_004371876.1| (NiFe) hydrogenase maturation protein HypF [Desulfobacca acetoxidans DSM 11109] gi|328454866|gb|AEB10695.1| (NiFe) hydrogenase maturation protein HypF [Desulfobacca acetoxidans DSM 11109] Length = 759 Score = 52.4 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 65/186 (34%), Gaps = 24/186 (12%) Query: 12 LRKACEFLDAGLPIAIPTETVYG--LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 L +A E L G IAI +++ G LA D+R ++ L + K R P V D++ Sbjct: 201 LTRAAEMLWNGKIIAI--KSLGGFHLACDARQEPVVQLLRQRKGR-RDKPFAVMVRDLAA 257 Query: 70 VKKHASVDPLSLHLAKLFW---PGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125 + L+ + W P ++ + I + +P Sbjct: 258 AEAICE-----LNRFEKSWLRSPASPIVLARQRANPGIAASLAPGNRYLGLMLPYTPLHL 312 Query: 126 KLIETYGHPLAIPSANRSGQISI-TNVK------HILSSSICKEIPLIIDGGIS---KIG 175 L + L + S NRS + TN + + + + + + S + Sbjct: 313 LLFQHSPDALVMTSGNRSEEPLAFTNDEARRTLGELADAFLFHNRDIHVPCDDSVVRPLH 372 Query: 176 LESTIV 181 STI+ Sbjct: 373 DGSTII 378 >gi|322806074|emb|CBZ03641.1| [NiFe] hydrogenase metallocenter assembly protein HypF [Clostridium botulinum H04402 065] Length = 651 Score = 52.4 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 32/151 (21%), Positives = 52/151 (34%), Gaps = 14/151 (9%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 + A E + G +A V G+ + +N AI L KKRP PL D Sbjct: 86 IYTAIELIKKGYIVA-----VKGIGGFHLVCNGKNKKAIENLRIRKKRP-HKPLAIMCKD 139 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126 + +VK+ V L + + L+L +T + + K +P Sbjct: 140 LKIVKELCYVSKLEEQILEGT--KKPILILKKKATNILPDNISPFNKHLGVMLPYSPLHY 197 Query: 127 LIETYGH-PLAIPSANRSGQISITNVKHILS 156 L+ G + S N SG+ + Sbjct: 198 LLFKQGLDIIIATSGNVSGRPMEYKNCEAIE 228 >gi|317013471|gb|ADU80907.1| putative transcriptional regulator [Helicobacter pylori Gambia94/24] Length = 750 Score = 52.4 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 35/153 (22%), Positives = 58/153 (37%), Gaps = 14/153 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 + +AL + + + G IA+ GL D+RN I RL +K RP P Sbjct: 191 NDDALLECAKDIQKGKIIALK-----GLGGFALLCDARNFQTIERLRLLKNRPL-KPFAL 244 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 D++ K+HA ++ L P+ L+ T + P N +P Sbjct: 245 MFKDLNAAKQHAFLNALECESLNS-TSAPI-LLARKKPDTKLAPNIAKNSPFYGVILPYT 302 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154 L++ P+ SAN + ++ K I Sbjct: 303 PLHALLLDLLDSPIVFTSANFNSLPLASDEKEI 335 >gi|292669357|ref|ZP_06602783.1| hydrogenase maturation protein HypF [Selenomonas noxia ATCC 43541] gi|292648992|gb|EFF66964.1| hydrogenase maturation protein HypF [Selenomonas noxia ATCC 43541] Length = 780 Score = 52.4 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 55/172 (31%), Gaps = 26/172 (15%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAI-----RRLYEIKKRPAM 57 D N L KA E + AG +AI G+ D+R+ A+ R+ E K Sbjct: 210 DGNPLEKAREIIAAGGIVAIK-----GIGGYHLACDARSDEAVTRLRRRKRREAK----- 259 Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD--IHPLSTANLKTA 115 L + V++ +V P ++L + + P Sbjct: 260 -ALAVMAGALETVRRLCAVSEEEERWLAS--PAAPIVLLQRRPDAEDAVAPSVAPGNPCL 316 Query: 116 CFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 +P L+ + SAN SG+ I + + + I+ Sbjct: 317 GVMLPYAPIHFLLLAPDDLWVMTSANLSGEPIIYDDAAA-EQGLAEIADAIL 367 >gi|283850430|ref|ZP_06367719.1| (NiFe) hydrogenase maturation protein HypF [Desulfovibrio sp. FW1012B] gi|283574456|gb|EFC22427.1| (NiFe) hydrogenase maturation protein HypF [Desulfovibrio sp. FW1012B] Length = 782 Score = 52.4 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 52/162 (32%), Gaps = 22/162 (13%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 A+ + L G A V GL D+ + TA+ L K+RP+ L Sbjct: 203 PAAVTALAQALAQGQVAA-----VKGLGGFHLVCDAASETAVATLRHRKRRPS-KALAVM 256 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP--- 120 V D+ + V + L P+TL L + + + P + + +P Sbjct: 257 VPDLPTAARLGRVGERAGALLTG-TVRPITL-LPARTDSGLTPNVAPDTREIGVMLPYTP 314 Query: 121 -CGFTKKLIETYGHP-----LAIPSANRSGQISITNVKHILS 156 P L + S N G+ + L+ Sbjct: 315 LHHLLLGAYARAAGPDRLPALVMTSGNAGGEPISLGNREALA 356 >gi|255943590|ref|XP_002562563.1| Pc19g00760 [Penicillium chrysogenum Wisconsin 54-1255] gi|211587297|emb|CAP79492.1| Pc19g00760 [Penicillium chrysogenum Wisconsin 54-1255] Length = 257 Score = 52.4 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 42/218 (19%), Positives = 73/218 (33%), Gaps = 44/218 (20%) Query: 7 TDSNALRKACEF---LDAGLPIAIPTETVYGLAVDSRNPTA-IRRLYEIKKRPAMNPLIC 62 T N R A E L G + IPT+ Y L + A I+R++ K R + I Sbjct: 11 TAPNVPRDAKETYNTLKRGGVVIIPTDVGYAL---LTSTQAGIQRIFSAKDRREGHN-IG 66 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLS----------T 109 + + V + + +++ +++ D +HP Sbjct: 67 IIGTYKQ-HRDIHVLSEAKFEMTGVLTEDMAMIVGVIAKYDTENLHPRLATLDPATLPQV 125 Query: 110 ANLKTACFRVPC-GFTKKLIETY-----GHPLAIPSANRSGQISITNVKHILSSSICKEI 163 T VP F ++L G SAN +GQ V+ + + I Sbjct: 126 TKGDTVSIAVPEGPFLRELGRLCDEDPEGMLTFGTSANLTGQGQRFRVED-IEPRVIDAI 184 Query: 164 PLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIET 201 L++D G+ +K + R GG+ + Sbjct: 185 DLVVDYGL---------------QKWQAYRRGGVNFDA 207 >gi|83642986|ref|YP_431421.1| [NiFe] hydrogenase maturation protein HypF [Hahella chejuensis KCTC 2396] gi|83631029|gb|ABC26996.1| [NiFe] hydrogenase maturation protein HypF [Hahella chejuensis KCTC 2396] Length = 785 Score = 52.4 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 52/168 (30%), Gaps = 27/168 (16%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 + + A + L G IA V G+ D+ N A+ L + K+RP P Sbjct: 205 DPIAAAWQGLSQGQIIA-----VKGVGGVHLLCDAGNARAVADLRQRKQRP-HKPFAIMT 258 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 + + + A +D + L + P+ L P Sbjct: 259 LNRASLAGMAEIDDHTEQLLQGA-DAPIALTRKGPDCDRRLSGVAPQCADIGVMYPYAPI 317 Query: 125 KKLI--ETYGHP-------------LAIPSANRSGQISITNVKHILSS 157 L+ + P L + SAN SG+ IT+ L Sbjct: 318 HYLLFHQALRCPADTTWLEQAQPLTLVVTSANLSGEPLITDNAQCLRD 365 >gi|83774278|dbj|BAE64402.1| unnamed protein product [Aspergillus oryzae] Length = 281 Score = 52.4 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 35/203 (17%), Positives = 70/203 (34%), Gaps = 41/203 (20%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPT-AIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77 L G + IPT+ Y L + I+R++ K R + I + + V Sbjct: 50 LKRGGVVIIPTDVGYAL---LTSTQTGIQRIFSAKDRREGHN-IGIIGTYKQ-HRQIHVL 104 Query: 78 PLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTA----------NLKTACFRVPC-GF 123 + + +++ +++ D +HP A T VP F Sbjct: 105 SEAKFEMTRVLTEDMAMIVGIIAKYDTKSLHPRLAALDPATLSQVTKGDTVSIAVPEGPF 164 Query: 124 TKKLIETY-----GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 ++L G + SAN +GQ ++ + + + L++D G+ Sbjct: 165 LRELGRLCDEGPEGMLMFGTSANLTGQGQRFRIED-IEPRVIDAVDLVVDYGL------- 216 Query: 179 TIVNVQCEKKVRILRPGGLEIET 201 +K ++ R GG+ + Sbjct: 217 --------QKWQVYRRGGVNFDA 231 >gi|187250803|ref|YP_001875285.1| (NiFe) hydrogenase maturation protein [Elusimicrobium minutum Pei191] gi|186970963|gb|ACC97948.1| (NiFe) hydrogenase maturation protein [Elusimicrobium minutum Pei191] Length = 736 Score = 52.4 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 42/182 (23%), Positives = 62/182 (34%), Gaps = 38/182 (20%) Query: 10 NALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 AL+ A FLD G A V Y LA D++NP A+ L KKRP PL Sbjct: 199 KALKTAAVFLDKGKITA-----VKSIGGYHLACDAKNPKAVTSLRLSKKRPY-KPLAIMF 252 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLST-----------------TDIHPL 107 D+ KK+ ++ + L P +++ T +H + Sbjct: 253 KDLKTAKKYCFINKIEAR--ALLSPAAPIVIVKKKKELKLISDNLNNYGIMLPYTPLHKI 310 Query: 108 STANLKTACFRVPCGFTK--KLIETYGHPLAIPSANRSG------QISITNVKHILSSSI 159 + LKT + G K L G S G +I I+ ++ Sbjct: 311 LFSLLKTDVLVMTSGNAKGGALCSGDGEAFKKLSKIADGFLYHEREIYNKVDDSIMFEAL 370 Query: 160 CK 161 K Sbjct: 371 GK 372 >gi|134078157|emb|CAK40238.1| unnamed protein product [Aspergillus niger] Length = 353 Score = 52.0 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 52/242 (21%), Positives = 80/242 (33%), Gaps = 36/242 (14%) Query: 3 IMSITDSNALRKAC---EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 S T + LR A E + IP YGL +P A+ RL+ K+R Sbjct: 108 TYSTTPIDVLRDAERVFEVIKNQGIALIPGSIGYGLVAS--DPAALDRLFTTKRRKPHK- 164 Query: 60 LICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLD-----LLSTTDIHPLSTANLK 113 +M+ +A + L + LT+ LD HP+ Sbjct: 165 ------KHAMIGSYALHQEIHVLPAREESMVRTLTVDLDVPVGVAAPFRADHPIIQKLGP 218 Query: 114 TACFRVPCGFTK--------------KLIETYGHPLAIPSANRSGQISITNVKHILSSSI 159 R T +L G PL SAN SG ++ + I Sbjct: 219 ELLSRCTHDGTLSMLVNGGPLQDELIRLCHAAGLPLLGSSANISGSGMKVRLED-IEPEI 277 Query: 160 CKEIPLIIDGGISKIGLE---STIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDE 216 + ++ID G + STI+N + K VR + + L++ VEL + Sbjct: 278 VEAADIVIDYGKRTFSVPRASSTIINFRDMKLVRYGACYDVIQDVLRKFYGVELPEDPGK 337 Query: 217 TS 218 Sbjct: 338 DE 339 >gi|325496247|gb|EGC94106.1| carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases [Escherichia fergusonii ECD227] Length = 766 Score = 52.0 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 43/124 (34%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + + + L P + Sbjct: 242 LACDARNSNAVATLRTRKYRPA-KPLAVMLPTAEGL------PDAARQLL--TTPAAPIV 292 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ L +P L++ PL + S N SG+ + + Sbjct: 293 LVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 352 Query: 154 ILSS 157 L Sbjct: 353 ALED 356 >gi|210631743|ref|ZP_03296985.1| hypothetical protein COLSTE_00870 [Collinsella stercoris DSM 13279] gi|210159863|gb|EEA90834.1| hypothetical protein COLSTE_00870 [Collinsella stercoris DSM 13279] Length = 1042 Score = 52.0 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 52/162 (32%), Gaps = 25/162 (15%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLI 61 T + + E + + +AI GL + + A+R L K+R + PL Sbjct: 233 TSDAIIARCAELIASDGIVAIK-----GLGGFHLACRADSERAVRELRARKRR-SNKPLA 286 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANL-KTACFRVP 120 D+ V P L P+ L+ S + +P S++ L + F +P Sbjct: 287 IMARDLDAAGALCHVGPKERDLLYGSI-KPIVLLQRRGSMSGENPPSSSGLASSVAFDLP 345 Query: 121 -----------CGFTKKLIETYGH-PLAIPSANRSGQISITN 150 G L + S N S + + Sbjct: 346 ELGIMLPYTPLQHLLMAECRVRGIDALVMTSGNLSEEPIEMD 387 >gi|114763661|ref|ZP_01443055.1| hydrogenase maturation factor F [Pelagibaca bermudensis HTCC2601] gi|114543662|gb|EAU46675.1| hydrogenase maturation factor F [Roseovarius sp. HTCC2601] Length = 742 Score = 52.0 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 57/164 (34%), Gaps = 17/164 (10%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 +A+ +A E L G +A V GL D+ + A+ L K+RPA PL Sbjct: 195 DAVARAAEALGRGAILA-----VKGLGGFHLCCDATDAGAVAELRRRKRRPA-KPLALM- 247 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123 + ++K +A+ L + P ++L + + +P Sbjct: 248 ASFEVLKGYAAPGVAERALLEE--PAAPIVLLPKQEG-GLPEALAPGQGALGWMLPYTPL 304 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 L G PL + S N SG+ ++ + + Sbjct: 305 HHLLCSAVGRPLVMTSGNLSGEPQAIGNAEA-RETLGGLVDAFL 347 >gi|290511020|ref|ZP_06550389.1| hydrogenase maturation protein HypF [Klebsiella sp. 1_1_55] gi|289776013|gb|EFD84012.1| hydrogenase maturation protein HypF [Klebsiella sp. 1_1_55] Length = 744 Score = 52.0 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 56/159 (35%), Gaps = 20/159 (12%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59 ++ AL+ A L AG +AI G+ D+ NPTA+ L K RPA P Sbjct: 191 TLNSEAALQAAITRLAAGDIVAIK-----GIGGFHLACDAGNPTAVATLRARKHRPA-KP 244 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 L + A + + L P +++ + + L + Sbjct: 245 LAVMLPSA------AGLPADAAALMGS--PAAPIVLIAKAQVSGLCDEIAPGLAEVGVML 296 Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSS 157 P L++ P+ + S N SG+ + L+ Sbjct: 297 PSNPLQHLLLQALARPIVMTSGNLSGRPPALSNAQALND 335 >gi|71909587|ref|YP_287174.1| hydrogenase maturation protein HypF [Dechloromonas aromatica RCB] gi|71849208|gb|AAZ48704.1| Hydrogenase maturation protein HypF [Dechloromonas aromatica RCB] Length = 763 Score = 52.0 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 41/209 (19%), Positives = 68/209 (32%), Gaps = 30/209 (14%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 D + + L AG +AI GL D+RN A+ L E K+R PL Sbjct: 193 DGDPIAACLHLLRAGKIVAIK-----GLGGFHLACDARNAVAVAELRERKQR-EEKPLAV 246 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 + + +A + L L + +VL T++ ++ L +P Sbjct: 247 MGLNADALADYARIGKAELALLQST---AAPIVLCAKGATELQGIA-PGLAWFGVMLPAT 302 Query: 123 FTKKLI--ETYGHP-------------LAIPSANRSGQISITNVKHILSSSICKEIPLII 167 L+ E G P L + SAN G+ + L ++ Sbjct: 303 PLHLLLWHEAAGRPSGSAWLGEPNELLLVMTSANPHGEPLVIANDEALDRLTGIADAYLM 362 Query: 168 DGGISKIGLESTIVNVQCEKKVRILRPGG 196 I + +++ V I R G Sbjct: 363 HNRDIVIRCDDSVLRVTPGGPAFIRRARG 391 >gi|323971560|gb|EGB66793.1| hydrogenase maturation protein HypF [Escherichia coli TA007] Length = 438 Score = 52.0 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 45/124 (36%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + + + L P + Sbjct: 250 LACDARNSNAVATLRARKHRPA-KPLAVMLPVAEGL------PDAARQLL--TTPAAPIV 300 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ +L +P L++ PL + S N SG+ + + Sbjct: 301 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 360 Query: 154 ILSS 157 L+ Sbjct: 361 ALAD 364 >gi|158422221|ref|YP_001523513.1| hydrogenase maturation protein [Azorhizobium caulinodans ORS 571] gi|46392529|gb|AAS91025.1| HypF [Azorhizobium caulinodans ORS 571] gi|158329110|dbj|BAF86595.1| hydrogenase maturation protein [Azorhizobium caulinodans ORS 571] Length = 763 Score = 52.0 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 61/163 (37%), Gaps = 7/163 (4%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 +A D+ + + L K+RPA PL V+D++ + A V L P + Sbjct: 223 IACDATSEAVVAELRRRKQRPA-KPLAVMVADLAAARALAEVSALEAEALSD--PSAPIV 279 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKH 153 +L + P + L+ + G PL + SANR+ + + Sbjct: 280 LLRRHLDGPLAPSVAPGQSHVGLMLTYTPLHHLLLASVGGPLVMTSANRANAPQVFRDEE 339 Query: 154 ILSSSICKEIPLII-DGGISKIGLESTIVNVQCEKKVRILRPG 195 +++ + ++ LE +V + VR++R G Sbjct: 340 A-EAALAGIVDGLLTHDRPIARRLEDGVVRIAAGG-VRVMRRG 380 >gi|308183848|ref|YP_003927981.1| Hydrogenase maturation protein HypF [Helicobacter pylori SJM180] gi|308059768|gb|ADO01664.1| Hydrogenase maturation protein HypF [Helicobacter pylori SJM180] Length = 750 Score = 52.0 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 57/154 (37%), Gaps = 16/154 (10%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 + +AL + + L G IA+ GL D+RN I RL +K RP P Sbjct: 191 NDDALLECAKDLQRGKIIALK-----GLGGFALLCDARNFQTIERLRLLKNRPL-KPFAL 244 Query: 63 HVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120 D++ K+HA ++ L L P L+ T + P N +P Sbjct: 245 MFKDLNSAKQHAFLNALECESLNSTSTP---ILLARKKPDTKLAPNIAKNSPFYGVILPY 301 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154 L++ P+ SAN + ++ I Sbjct: 302 TPLHALLLDLLDSPIVFTSANFNSLPLASDEAEI 335 >gi|170783076|ref|YP_001711410.1| hypothetical protein CMS_2773 [Clavibacter michiganensis subsp. sepedonicus] gi|169157646|emb|CAQ02845.1| conserved hypothetical protein [Clavibacter michiganensis subsp. sepedonicus] Length = 260 Score = 52.0 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 30/169 (17%), Positives = 64/169 (37%), Gaps = 17/169 (10%) Query: 13 RKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +A + L+A G + T+ Y L + + R ++ K+R P + + I ++ Sbjct: 16 ERAAQALEAPGGLVVAATKVGYILMT--TDGVGLERKFDAKQRNRDKPGVVLCTSIEQLE 73 Query: 72 KHASVDPLSLHLAKLFWPGPL---TLVLDLLSTTDIHPLSTAN------LKTACFRV--- 119 + A ++ L + W + ++ + P A T+CF + Sbjct: 74 QLAVLNDEILAFYQEHWDADVLLGCILPWREDAKHLIPDEVAGELAMDRRGTSCFVIRFG 133 Query: 120 -PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 P + + G SAN SG+ + V+ + I ++ +I+ Sbjct: 134 RPAEQLAERLWASGRLSFASSANPSGKGNRGRVEG-IGERIEQQADVIV 181 >gi|145637787|ref|ZP_01793437.1| hypothetical protein CGSHiHH_02755 [Haemophilus influenzae PittHH] gi|145269032|gb|EDK08985.1| hypothetical protein CGSHiHH_02755 [Haemophilus influenzae PittHH] Length = 94 Score = 52.0 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 32/94 (34%), Gaps = 3/94 (3%) Query: 98 LLSTTDIHPLSTANLKTACFR-VPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILS 156 + + + T + R K L E G L SAN +G+ + Sbjct: 1 MPAKSTTPHFLTGKFDSIAVRLCDHPSVKALCELTGFALTSTSANLTGEPPCRTADEV-R 59 Query: 157 SSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190 + P ++D + + S I +++ + R Sbjct: 60 LQFGSDFP-VLDEMVGRAHNPSEIRDLRTNQLFR 92 >gi|331700079|ref|YP_004336318.1| (NiFe) hydrogenase maturation protein HypF [Pseudonocardia dioxanivorans CB1190] gi|326954768|gb|AEA28465.1| (NiFe) hydrogenase maturation protein HypF [Pseudonocardia dioxanivorans CB1190] Length = 779 Score = 51.6 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 49/164 (29%), Gaps = 22/164 (13%) Query: 17 EFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 L G +A V GL + A+R L E K R P V+D++ + Sbjct: 214 RLLADGAVVA-----VKGLGGFHLACRADAADAVRGLRERKSRG-GKPFAVMVADLAAAR 267 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET- 130 + A VD + P ++L L + + +P L+ T Sbjct: 268 RFARVDDDEAAVLTS--PARPVVLLRRLPSAPVTDQVAPGSPHLGLLLPYTPVHHLLFTQ 325 Query: 131 ---YGHP----LAIPSANRSGQISITNVKHILSSSICKEIPLII 167 P + SAN S + + ++ Sbjct: 326 VPGSTAPVPEAFVLTSANISAEPICHTDADA-RDRLPALCDAVL 368 >gi|317011901|gb|ADU82509.1| hydrogenase maturation protein HypF [Helicobacter pylori Lithuania75] Length = 750 Score = 51.6 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 58/154 (37%), Gaps = 16/154 (10%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 + +AL + + + G IA+ GL D RN I RL +KKRP P Sbjct: 191 NDDALLECAKDIQKGKIIALK-----GLGGFALLCDGRNFQTIERLRLLKKRPL-KPFAL 244 Query: 63 HVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120 D+ K+HA ++ L L + P L+ T + P N +P Sbjct: 245 MFKDLKSAKQHAFLNALEGESLNSVSTP---ILLARKKPDTPLAPNIAKNSPFYGVILPY 301 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154 L++ P+ SAN S ++ K I Sbjct: 302 TPLHALLLDLLDFPIVFTSANFSSLPLASDEKEI 335 >gi|188526857|ref|YP_001909544.1| transcriptional regulator (hypF) [Helicobacter pylori Shi470] gi|188143097|gb|ACD47514.1| transcriptional regulator (hypF) [Helicobacter pylori Shi470] Length = 750 Score = 51.6 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 35/153 (22%), Positives = 56/153 (36%), Gaps = 14/153 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 + +AL + + + G IA+ GL D+RN I RL +K RP P Sbjct: 191 NDDALLECAKDIQKGKIIALK-----GLGGFALLCDARNFQTIERLRLLKNRPL-KPFAL 244 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 D++ K+HA + L P+ L+ T + P N +P Sbjct: 245 MFKDLNTAKQHAFLSVLECESLNS-TSAPI-LLARKKPNTQLAPNIAKNSPFYGVILPYT 302 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154 L++ P+ SAN S ++ I Sbjct: 303 PLHALLLDLLDFPIIFTSANFSSLPLASDEADI 335 >gi|119900090|ref|YP_935303.1| hydrogenase maturation protein HypF [Azoarcus sp. BH72] gi|119672503|emb|CAL96417.1| probable hydrogenase maturation protein HypF [Azoarcus sp. BH72] Length = 790 Score = 51.6 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 34/163 (20%), Positives = 51/163 (31%), Gaps = 29/163 (17%) Query: 19 LDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 L G +A V G+ D+RNP A+ RL E K R P V+++ + Sbjct: 222 LLCGEIVA-----VKGVGGFHLMCDARNPEAVGRLRERKSR-ENKPFALMVANLESARHW 275 Query: 74 ASVDPLSLHLAKLFWP-GPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI--ET 130 A + L P P+ L S L +P L+ + Sbjct: 276 ARLSSTDEQLLAA--PERPVVLCDKRPSVDQELWGVAPALAAVGLMLPYTPLHYLLFHDY 333 Query: 131 YGHP-------------LAIPSANRSGQISITNVKHILSSSIC 160 G P L SAN G+ +T + + Sbjct: 334 AGRPPGTEWLRRPLDLALVCTSANPGGEPLVTGNREATRRLMG 376 >gi|297379270|gb|ADI34157.1| [NiFe] hydrogenase maturation protein HypF [Helicobacter pylori v225d] Length = 757 Score = 51.6 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 35/153 (22%), Positives = 56/153 (36%), Gaps = 14/153 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 + +AL + + + G IA+ GL D+RN I RL +K RP P Sbjct: 198 NDDALLECAKDIQKGKIIALK-----GLGGFALLCDARNFQTIERLRLLKNRPL-KPFAL 251 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 D++ K+HA + L P+ L+ T + P N +P Sbjct: 252 MFKDLNTAKQHAFLSALECESLNSTSV-PI-LLARKKPDTQLAPNIAKNSPFYGVILPYT 309 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154 L++ P+ SAN S ++ I Sbjct: 310 PLHALLLDLLDFPIIFTSANFSSLPLASDEAEI 342 >gi|217978879|ref|YP_002363026.1| (NiFe) hydrogenase maturation protein HypF [Methylocella silvestris BL2] gi|217504255|gb|ACK51664.1| (NiFe) hydrogenase maturation protein HypF [Methylocella silvestris BL2] Length = 760 Score = 51.6 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 70/227 (30%), Gaps = 51/227 (22%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 + + L G +A+ G+ D+ N A+ L K+RPA P V++ Sbjct: 197 VEEIAVALRHGQIVALK-----GIGGFHLLCDATNERAVATLRRRKRRPA-KPFAVMVAN 250 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126 + V+ A+ L + P L + + + P L +P Sbjct: 251 EASVEHIATPSLGERALLRQLA-RPAVL---MRARAGLAPSVAPGLDRVAVMLPSAPVHH 306 Query: 127 LI--ETYGHP-------------LAIPSANRSGQISITNVKHILSS-------------- 157 L+ G P L SAN +G+ I L + Sbjct: 307 LLFHALAGEPKGAAWLDQLQPVALVATSANVAGEPLIIADAEALQALAGVADMIVTHDRP 366 Query: 158 ---SICKEIPLIIDGGISKI----GLESTIVNVQCEKKVRILRPGGL 197 + +IDGG + + G +++ + I G L Sbjct: 367 ILMRADDSVMAVIDGGPAYVRRSRGFAPEPIDLGQDGPAVIAVGGHL 413 >gi|94310479|ref|YP_583689.1| (NiFe) hydrogenase maturation protein HypF [Cupriavidus metallidurans CH34] gi|93354331|gb|ABF08420.1| carbamoyl phosphate phosphatase and maturation protein for (NiFe) hydrogenases [Cupriavidus metallidurans CH34] Length = 785 Score = 51.6 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 52/173 (30%), Gaps = 29/173 (16%) Query: 15 ACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 L G +AI GL D+RN A+ RL + K+R P V++ Sbjct: 219 VARVLR-GEIVAIK-----GLGGFHLACDARNAEAVARLRDRKQR-EEKPFAVMVANPVT 271 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI- 128 + V + P+ L+ + L +P + L+ Sbjct: 272 AAQWGDV-CSGAEILLAAPERPIVLLRKQRIVDEQLHGVAPGLAWLGVMLPHTPLQYLLF 330 Query: 129 -ETYGHP-------------LAIPSANRSGQISITNVKHILSSSICKEIPLII 167 E G P L + SAN G+ + H+ + + Sbjct: 331 HEAAGRPDGLAWLTQPQPLVLVMTSANPGGEPLVIR-NHVALQRLAGIADAFL 382 >gi|317156139|ref|XP_001825535.2| expressed protein [Aspergillus oryzae RIB40] Length = 257 Score = 51.2 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 35/203 (17%), Positives = 70/203 (34%), Gaps = 41/203 (20%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPT-AIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77 L G + IPT+ Y L + I+R++ K R + I + + V Sbjct: 26 LKRGGVVIIPTDVGYAL---LTSTQTGIQRIFSAKDRREGHN-IGIIGTYKQ-HRQIHVL 80 Query: 78 PLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTA----------NLKTACFRVPC-GF 123 + + +++ +++ D +HP A T VP F Sbjct: 81 SEAKFEMTRVLTEDMAMIVGIIAKYDTKSLHPRLAALDPATLSQVTKGDTVSIAVPEGPF 140 Query: 124 TKKLIETY-----GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 ++L G + SAN +GQ ++ + + + L++D G+ Sbjct: 141 LRELGRLCDEGPEGMLMFGTSANLTGQGQRFRIED-IEPRVIDAVDLVVDYGL------- 192 Query: 179 TIVNVQCEKKVRILRPGGLEIET 201 +K ++ R GG+ + Sbjct: 193 --------QKWQVYRRGGVNFDA 207 >gi|110596781|ref|ZP_01385071.1| (NiFe) hydrogenase maturation protein HypF [Chlorobium ferrooxidans DSM 13031] gi|110341468|gb|EAT59928.1| (NiFe) hydrogenase maturation protein HypF [Chlorobium ferrooxidans DSM 13031] Length = 776 Score = 51.2 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 53/156 (33%), Gaps = 18/156 (11%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYG-----LAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 + L + L +G IA+ G LAVD+ N A+RRL K R A P Sbjct: 219 DDVLAETSTILRSGGIIALK-----GVGGFHLAVDASNEDAVRRLRARKGREA-KPFAVM 272 Query: 64 VSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 + D + ++ + L P ++L T + P + Sbjct: 273 MRDAVITGRYCELSDGELAALNAAEAP---IVLLKKRDGTALAPSVAPESDRLGVMLAYS 329 Query: 123 FTKKLIETYGHP--LAIPSANRSGQISITNVKHILS 156 L+ G P L + SAN S + + + Sbjct: 330 PLHALLFD-GSPEVLVMTSANFSEEPITSENDDAVK 364 >gi|238500582|ref|XP_002381525.1| conserved hypothetical protein [Aspergillus flavus NRRL3357] gi|220691762|gb|EED48109.1| conserved hypothetical protein [Aspergillus flavus NRRL3357] Length = 257 Score = 51.2 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 35/203 (17%), Positives = 70/203 (34%), Gaps = 41/203 (20%) Query: 19 LDAGLPIAIPTETVYGLAVDSRNPT-AIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77 L G + IPT+ Y L + I+R++ K R + I + + V Sbjct: 26 LKRGGVVIIPTDVGYAL---LTSTQTGIQRIFSAKDRREGHN-IGIIGTYKQ-HRQIHVL 80 Query: 78 PLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTA----------NLKTACFRVPC-GF 123 + + +++ +++ D +HP A T VP F Sbjct: 81 SEAKFEMTRVLTEDMAMIVGIIAKYDTKSLHPRLAALDPATLSQVTKGDTVSIAVPEGPF 140 Query: 124 TKKLIETY-----GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 ++L G + SAN +GQ ++ + + + L++D G+ Sbjct: 141 LRELGRLCDEDPEGMLMFGTSANLTGQGQRFRIED-IEPRVIDAVDLVVDYGL------- 192 Query: 179 TIVNVQCEKKVRILRPGGLEIET 201 +K ++ R GG+ + Sbjct: 193 --------QKWQVYRRGGVNFDA 207 >gi|15644679|ref|NP_206849.1| transcriptional regulator (hypF) [Helicobacter pylori 26695] gi|2313122|gb|AAD07115.1| transcriptional regulator (hypF) [Helicobacter pylori 26695] Length = 769 Score = 51.2 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 55/154 (35%), Gaps = 16/154 (10%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 + +AL + + + G IA+ GL D RN I RL +K RP P Sbjct: 210 NDDALLECAKDIQKGKIIALK-----GLGGFALLCDGRNFQTIERLRLLKNRPL-KPFAL 263 Query: 63 HVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120 D++ K+HA ++ L L P L+ + P N +P Sbjct: 264 MFKDLNTAKQHAFLNALECESLISTSAP---ILLARKKPDIKLAPNIAKNSPFYGVILPY 320 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154 L++ P+ SAN S ++ I Sbjct: 321 TPLHALLLDLLDFPIVFTSANFSSLPLASDEAEI 354 >gi|148253520|ref|YP_001238105.1| carbamoyl phosphate phosphatase, (NiFe) hydrogenase maturation protein [Bradyrhizobium sp. BTAi1] gi|146405693|gb|ABQ34199.1| carbamoyl phosphate phosphatase, (NiFe) Hydrogenase maturation protein [Bradyrhizobium sp. BTAi1] Length = 752 Score = 51.2 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 56/175 (32%), Gaps = 30/175 (17%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAI---RRLYEIKKRPAMNPL 60 S+ + L AG +AI GL D+ + A+ R R P Sbjct: 195 SHGVDDIAAALAAGQIVAIK-----GLGGYQLLCDAHDEQAVRRLRARKRRDGR----PF 245 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 ++ ++ + A +DP L + P+ LV S I P L +P Sbjct: 246 AVMLASVAAAIEIADIDPAERALLEQIA-RPIVLV---TSRGGIAPSVAPGLAKVGVMLP 301 Query: 121 C--------GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 + L L SAN SG+ +T + + LI+ Sbjct: 302 VAPLHHLIFHELRALHGATARALVCTSANLSGEPLLTGDDEA-RAGLADIADLIV 355 >gi|184155438|ref|YP_001843778.1| hypothetical protein LAF_0962 [Lactobacillus fermentum IFO 3956] gi|183226782|dbj|BAG27298.1| conserved hypothetical protein [Lactobacillus fermentum IFO 3956] gi|299783237|gb|ADJ41235.1| Putative uncharacterized protein [Lactobacillus fermentum CECT 5716] Length = 257 Score = 51.2 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 59/176 (33%), Gaps = 18/176 (10%) Query: 10 NALRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 A + A +FL G I PT+ Y + + + R ++ K+R P + + Sbjct: 10 EATQAAIDFLEQDGKMIVSPTKVGYIIMT--TDKAGLERKFDAKQRNRNKPGVVLCGSME 67 Query: 69 MVKKHASVDPLSLHLAKLFWPGP--LTLVLDLLS-------TTDIHPLSTANLKTACFRV 119 +++ A + P L + W L +L L T T+CF + Sbjct: 68 QLEELAEMTPKIRDLYQTHWDQDVLLGCILPWKQEAREKYLGDGREELMTDRRGTSCFVI 127 Query: 120 -----PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 + + SAN SG+ + V + I L+I+ Sbjct: 128 RYGTPSEQLADYFWKKEHKMIYASSANPSGKGNRGKVAG-IGDRIENAADLVIEAD 182 >gi|20092954|ref|NP_619029.1| hydrogenase expression/formation regulatory protein [Methanosarcina acetivorans C2A] gi|19918267|gb|AAM07509.1| hydrogenase expression/formation regulatory protein [Methanosarcina acetivorans C2A] Length = 774 Score = 50.8 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 42/214 (19%), Positives = 74/214 (34%), Gaps = 15/214 (7%) Query: 10 NALRKACEFLDAGLPIAIPTETV--YG---LAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64 A+ KA L G + +V +G +A ++R ++ L + RP P Sbjct: 203 EAIVKASHLLAQGSIL-----SVKGFGGFHIACNARKEDPVQELRKRLGRPE-QPFAVMA 256 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 D +V+ A L P+T VL T ++ + NL +P T Sbjct: 257 KDTVVVESFAEPGHEDLKCLSSA-HRPIT-VLPKSKTFELAESVSPNLHNIGVMLPYTGT 314 Query: 125 KKLI--ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182 ++L+ + SAN G+ + + L ++ + + T++ Sbjct: 315 QELLFDLMPDSVYVMTSANLPGRPMVVENEEALEKLKGISDFHLLHNRVIANRNDDTVIR 374 Query: 183 VQCEKKVRILRPGGLEIETLKRAISVELEYCVDE 216 V K I R G E ++ VE V Sbjct: 375 VVNGKSAFIRRSRGFVPEPVELPFEVEAVAGVGA 408 >gi|293449025|ref|ZP_06663446.1| hydrogenase maturation protein HypF [Escherichia coli B088] gi|291322115|gb|EFE61544.1| hydrogenase maturation protein HypF [Escherichia coli B088] gi|323946410|gb|EGB42438.1| hydrogenase maturation protein HypF [Escherichia coli H120] Length = 750 Score = 50.8 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 45/124 (36%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + A P + L P + Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ +L +P L++ PL + S N SG+ + + Sbjct: 277 LVDKKYVPELCDDIAPDLNEVGAMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336 Query: 154 ILSS 157 L Sbjct: 337 ALED 340 >gi|168180410|ref|ZP_02615074.1| [NiFe] hydrogenase maturation protein HypF [Clostridium botulinum NCTC 2916] gi|182668716|gb|EDT80694.1| [NiFe] hydrogenase maturation protein HypF [Clostridium botulinum NCTC 2916] Length = 812 Score = 50.8 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 31/151 (20%), Positives = 52/151 (34%), Gaps = 14/151 (9%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 + A E + G +A V G+ + +N AI L KKRP PL + Sbjct: 247 IYTAIELIKKGYIVA-----VKGIGGFHLVCNGKNKKAIENLRIRKKRP-HKPLAIMCKN 300 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126 + +VK+ V L + + L+L +T + + K +P Sbjct: 301 LKIVKELCYVSKLEEQILEGT--KKPILILKKKATNILPDNISPFNKHLGVMLPYSPLHY 358 Query: 127 LIETYGH-PLAIPSANRSGQISITNVKHILS 156 L+ G + S N SG+ + Sbjct: 359 LLFKEGLDIIIATSGNVSGRPMEYKNCEAIE 389 >gi|27382041|ref|NP_773570.1| hydrogenase maturation protein [Bradyrhizobium japonicum USDA 110] gi|27355211|dbj|BAC52195.1| hydrogenase maturation protein [Bradyrhizobium japonicum USDA 110] Length = 753 Score = 50.8 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 40/200 (20%), Positives = 66/200 (33%), Gaps = 22/200 (11%) Query: 34 GLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFW 88 GL D+R+ A++RL + K+R P V + V A D L L ++ Sbjct: 215 GLGGYQLICDARDEAAVQRLRQRKERDQ-KPFAVMVGSVDAVAGIADADAAELALLEMA- 272 Query: 89 PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI--------ETYG--HPLAIP 138 P P+ L + S + P L +P LI + G Sbjct: 273 PRPIVL---MTSRHRLAPAIAPGLSRIGIMLPVTPLHHLIFEALNSVHKRAGESWATVAT 329 Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG-GL 197 SAN G+ + + + + LI+ + V + R +R G Sbjct: 330 SANPGGEPLLLDNREA-ELRLAGIADLIVTHDRDIVTRADDSVAAVVAGRTRFIRRARGY 388 Query: 198 EIETLKRAISVELEYCVDET 217 E ++ A +V V Sbjct: 389 VPEPVRLAQTVPPILAVGGA 408 >gi|317031888|ref|XP_001393615.2| expressed protein [Aspergillus niger CBS 513.88] Length = 247 Score = 50.8 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 52/242 (21%), Positives = 80/242 (33%), Gaps = 36/242 (14%) Query: 3 IMSITDSNALRKAC---EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59 S T + LR A E + IP YGL +P A+ RL+ K+R Sbjct: 2 TYSTTPIDVLRDAERVFEVIKNQGIALIPGSIGYGLVAS--DPAALDRLFTTKRRKPHK- 58 Query: 60 LICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLD-----LLSTTDIHPLSTANLK 113 +M+ +A + L + LT+ LD HP+ Sbjct: 59 ------KHAMIGSYALHQEIHVLPAREESMVRTLTVDLDVPVGVAAPFRADHPIIQKLGP 112 Query: 114 TACFRVPCGFTK--------------KLIETYGHPLAIPSANRSGQISITNVKHILSSSI 159 R T +L G PL SAN SG ++ + I Sbjct: 113 ELLSRCTHDGTLSMLVNGGPLQDELIRLCHAAGLPLLGSSANISGSGMKVRLED-IEPEI 171 Query: 160 CKEIPLIIDGGISKIGLE---STIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDE 216 + ++ID G + STI+N + K VR + + L++ VEL + Sbjct: 172 VEAADIVIDYGKRTFSVPRASSTIINFRDMKLVRYGACYDVIQDVLRKFYGVELPEDPGK 231 Query: 217 TS 218 Sbjct: 232 DE 233 >gi|288561290|ref|YP_003424776.1| hydrogenase maturation factor HypF [Methanobrevibacter ruminantium M1] gi|288544000|gb|ADC47884.1| hydrogenase maturation factor HypF [Methanobrevibacter ruminantium M1] Length = 815 Score = 50.8 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 53/172 (30%), Gaps = 18/172 (10%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMN 58 + ++ L+ LD G AI G+ + ++ A+ L E R Sbjct: 215 IDTESNDPLKDTARLLDEGKIFAIK-----GIGGTHLVANVKDEKAVSTLRERLGR-KNQ 268 Query: 59 PLICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117 DI V+ A V L P ++L D + L Sbjct: 269 AFAVMSPDIETVRTFAIVSDEEEKTLLSKERP---IVILKKSKDYDFAESVSPRLHNIGV 325 Query: 118 RVPCGFTKKLI-ETYGHPLAI-PSANRSGQISITNVKHILSSSICKEIPLII 167 +P L+ P I SAN G+ + + IL ++ + + Sbjct: 326 MLPYAPLHHLLFNETDSPAYIMTSANVPGEPMMITNEEIL-QNLDEIADYYL 376 >gi|297568211|ref|YP_003689555.1| (NiFe) hydrogenase maturation protein HypF [Desulfurivibrio alkaliphilus AHT2] gi|296924126|gb|ADH84936.1| (NiFe) hydrogenase maturation protein HypF [Desulfurivibrio alkaliphilus AHT2] Length = 861 Score = 50.8 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 55/155 (35%), Gaps = 15/155 (9%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICH 63 +A+ + L AG +AI G+ + + A++RL K RP PL Sbjct: 208 PSAVAETRRRLLAGEIVAIK-----GIGGFHLAVNGADQAAVKRLRRRKGRP-DKPLALM 261 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWP-GPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 V D++ + + P+ +L P P+ L L + + + + Sbjct: 262 VRDLATARGLVQLGPMEENLL--VSPARPIVLALRQAAALPVAAAVAPGNRRLGLMLAYA 319 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILS 156 L+++ L + SAN S + + Sbjct: 320 PLHHLLLDSELPLLVMTSANPSSEPLCIDNDEACR 354 >gi|317010330|gb|ADU84077.1| transcriptional regulatory protein HypF [Helicobacter pylori SouthAfrica7] Length = 757 Score = 50.8 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 37/169 (21%), Positives = 61/169 (36%), Gaps = 20/169 (11%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPL 60 + D +AL + + + G IA+ GL D+RN I RL +K RP P Sbjct: 196 LNDGDALLECAKDIQKGKIIALK-----GLGGFALVCDARNFQTIERLRLLKNRPL-KPF 249 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 D++ K+HA ++ L K P+ L+ T + N +P Sbjct: 250 ALMFKDLNTAKQHAFLNELECESLKSA-NAPI-LLAHKKPNTQLASNIAKNSPFYGVILP 307 Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 L++ P+ SAN + ++ K + I D Sbjct: 308 YTPLHALLLDLLNFPIVFTSANFNSLPLASDEKEL------DRFHFIFD 350 >gi|294811177|ref|ZP_06769820.1| Putative NiFe-hydrogenase maturation protein [Streptomyces clavuligerus ATCC 27064] gi|326439707|ref|ZP_08214441.1| hydrogenase maturation protein [Streptomyces clavuligerus ATCC 27064] gi|294323776|gb|EFG05419.1| Putative NiFe-hydrogenase maturation protein [Streptomyces clavuligerus ATCC 27064] Length = 832 Score = 50.8 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 40/209 (19%), Positives = 64/209 (30%), Gaps = 30/209 (14%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61 T AL +A L AG +A V Y LA D+ N + L K R P Sbjct: 231 TGDTALVEARRLLAAGAVLA-----VKGVGGYHLACDAANAGTVALLRRRKNRG-DKPFA 284 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 V + + P L GP ++ L + A R P Sbjct: 285 LMVRAPEDIAPLVRLGPEERALL----TGPARPIVLLRRRPEPPGGGPAAADLVAPRAPD 340 Query: 122 --------GFTKKLIETYGHP-----LAIPSANRSGQISITNVKHILSSSICKEIP-LII 167 L+ G P L + S N +G+ +T L + + + Sbjct: 341 LGVMLPYTPLHHLLLGLDGDPEGPRVLVMTSGNLAGEPIVTEDAEAL-ERLAPLVDAWLA 399 Query: 168 DGGISKIGLESTIVNVQCEKKVRILRPGG 196 ++ + ++V V + + R G Sbjct: 400 HDRPIRVPCDDSVVRVVDGVPLPLRRSRG 428 >gi|212703719|ref|ZP_03311847.1| hypothetical protein DESPIG_01766 [Desulfovibrio piger ATCC 29098] gi|212672871|gb|EEB33354.1| hypothetical protein DESPIG_01766 [Desulfovibrio piger ATCC 29098] Length = 845 Score = 50.8 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 46/133 (34%), Gaps = 15/133 (11%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+R+ ++ L ++KR PL V D++ ++ + P L P + Sbjct: 252 LACDARSARSVS-LLRLRKRRPHKPLALMVPDLATARELCDLPPEHEALL--LCPEKPIV 308 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI--------ETYGHP---LAIPSANRS 143 + + P + +P ++ G P L + SAN S Sbjct: 309 LCPARKGC-LPPSIAPDTAAIGIMLPYTPLHAVLFDELVRLTAAAGEPAPVLVMTSANAS 367 Query: 144 GQISITNVKHILS 156 G+ + L Sbjct: 368 GEPICLGNREALR 380 >gi|215694572|dbj|BAG89565.1| unnamed protein product [Oryza sativa Japonica Group] Length = 136 Score = 50.8 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 13/37 (35%), Positives = 25/37 (67%), Gaps = 1/37 (2%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDS 39 I+ T+ + ++ A + ++ G IA+PT+T+YG A D+ Sbjct: 64 ILPATNDHVMK-AIDSINRGQVIAVPTDTIYGFACDA 99 >gi|210134243|ref|YP_002300682.1| transcriptional regulatory protein HypF [Helicobacter pylori P12] gi|210132211|gb|ACJ07202.1| transcriptional regulatory protein HypF [Helicobacter pylori P12] Length = 757 Score = 50.4 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 35/153 (22%), Positives = 56/153 (36%), Gaps = 14/153 (9%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 + +AL + + + G IA+ GL D RN I RL +K RP P Sbjct: 198 NDDALLECAKDIQKGKIIALK-----GLGGFALLCDGRNFQTIERLRLLKNRPL-KPFAL 251 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 D++ K+HA ++ L P+ L+ T + P N +P Sbjct: 252 MFKDLNTAKQHAFLNALECESLNS-TSAPI-LLARKKPNTQLAPNIAKNSPFYGVILPYT 309 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154 L++ P+ SAN S ++ I Sbjct: 310 PLHALLLDLLDFPIVFTSANFSSLPLASDEAEI 342 >gi|254167544|ref|ZP_04874396.1| (NiFe) hydrogenase maturation protein HypF [Aciduliprofundum boonei T469] gi|197623807|gb|EDY36370.1| (NiFe) hydrogenase maturation protein HypF [Aciduliprofundum boonei T469] Length = 766 Score = 50.4 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 54/166 (32%), Gaps = 23/166 (13%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMN--PLICHV 64 L+ A +D G IAI G+ D+RN + E++KR P Sbjct: 203 LKNAAMLIDKGYIIAIK-----GIGGFHIACDARNDETVG---ELRKRIRRKAQPFAIMA 254 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP---C 121 D++ +++ A +D + P+TL L + + L T +P Sbjct: 255 KDLNTIEEFAIIDDEEKEEINSYR-RPITL-LKKRDPFPLPDNLSPGLHTIGVMLPYTGL 312 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 + + SAN I + I I + + Sbjct: 313 HYILFHHSQSDVYVM-TSANYPDFPMIKDNDKI--QEIKDAVDYFL 355 >gi|46561145|gb|AAT00793.1| HypF [Bradyrhizobium japonicum] Length = 753 Score = 50.4 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 40/200 (20%), Positives = 66/200 (33%), Gaps = 22/200 (11%) Query: 34 GLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFW 88 GL D+R+ A++RL + K+R P V + V A D L L ++ Sbjct: 215 GLGGYQLICDARDEAAVQRLRQRKERDQ-KPFAVMVGSVDAVAGIADADAAELALLEMA- 272 Query: 89 PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI--------ETYG--HPLAIP 138 P P+ L + S + P L +P LI + G Sbjct: 273 PRPIVL---MTSRHRLAPAIAPGLSRIGIMLPVTPLHHLIFEALNSVHKRAGESWATVAT 329 Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG-GL 197 SAN G+ + + + + LI+ + V + R +R G Sbjct: 330 SANPGGEPLLIDNREA-ELRLAGIADLIVTHDRDIVTRADDSVAAVVAGRTRFIRRARGY 388 Query: 198 EIETLKRAISVELEYCVDET 217 E ++ A +V V Sbjct: 389 VPEPVRLAQTVPPILAVGGA 408 >gi|170754300|ref|YP_001781384.1| [NiFe] hydrogenase maturation protein HypF [Clostridium botulinum B1 str. Okra] gi|169119512|gb|ACA43348.1| [NiFe] hydrogenase maturation protein HypF [Clostridium botulinum B1 str. Okra] Length = 812 Score = 50.4 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 11/79 (13%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 + A E + G +A V G+ + ++ AI L K+RP PL D Sbjct: 247 IYTAVELIKKGYIVA-----VKGIGGFHLVCNGKDKKAIENLRIRKERP-HKPLAIMCKD 300 Query: 67 ISMVKKHASVDPLSLHLAK 85 + +VK+ V L + + Sbjct: 301 LKIVKELCYVSKLEEQILE 319 >gi|111221266|ref|YP_712060.1| hydrogenase maturation protein hypF [Frankia alni ACN14a] gi|111148798|emb|CAJ60476.1| Hydrogenase maturation protein hypF [Frankia alni ACN14a] Length = 824 Score = 50.4 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 40/129 (31%), Gaps = 10/129 (7%) Query: 33 YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPL 92 Y LA + + + RL K RP P D++ + +V P L P Sbjct: 244 YHLACRAEDDEGLTRLRGRKNRP-DQPFAVMARDLATAARVGTVSPAVAALLSG--PAAP 300 Query: 93 TLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI-------ETYGHPLAIPSANRSGQ 145 ++ + L +P L+ L + SANRSG+ Sbjct: 301 IVLTGRAPGAPLSALVAPGSPLVGLLLPYTPLHHLLFAPAPGGGPPPRLLVMTSANRSGE 360 Query: 146 ISITNVKHI 154 + + Sbjct: 361 PICFDDREA 369 >gi|121708723|ref|XP_001272227.1| conserved hypothetical protein [Aspergillus clavatus NRRL 1] gi|119400375|gb|EAW10801.1| conserved hypothetical protein [Aspergillus clavatus NRRL 1] Length = 242 Score = 50.1 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 80/220 (36%), Gaps = 27/220 (12%) Query: 4 MSITDSNALRKACEFLDAGLPIAIPTETV-YGLAVDSRNPTAIRRLYEIKKRPAMN--PL 60 MS S ++ + L G IP+ +V YG+ + +P A+ R+Y +K+R + Sbjct: 1 MSPNISTDAQRVLDILTNGGIAIIPS-SVGYGIV--ATDPCALARIYTVKQRAPHKRHAI 57 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA---NLKTACF 117 I + S + PL ++ + + A + T Sbjct: 58 IGSYPLHRALHLLPSEKQELTRALTVTLDLPLGIIAPYRADHPLLRNLDAETLSQSTVGH 117 Query: 118 RVP-----CGFTKKLIE---TYGHPLAIPSANRSGQISITNVKHILSSSICKE-IPLIID 168 V F ++L+ G + SAN SGQ T + +++D Sbjct: 118 TVAMLVNGGPFQEELVRLATAAGKLVLGSSANISGQ--GTKAVVEEIEEEVRRAADVVVD 175 Query: 169 GGISKIGLE---STIVNVQCEKKVRILRPGGLEIETLKRA 205 G + G ST+V+V K+ ++R G E ++ Sbjct: 176 YGRVRYGKPRASSTMVDV---GKMALVRFGAC-YEVIRDV 211 >gi|240171471|ref|ZP_04750130.1| hydrogenase maturation factor, HypF [Mycobacterium kansasii ATCC 12478] Length = 790 Score = 50.1 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 54/171 (31%), Gaps = 22/171 (12%) Query: 11 ALRKACEFLDAGLPIAIPTETVYGLA----VDSRNPTAIRR-LYEIKKRPAMNPLICHVS 65 AL L AG +AI G+ + + A+ R L K R A P V Sbjct: 221 ALAATQRALAAGAVVAIK-----GIGGYHLACAVDDDAVVRSLRSRKARGA-KPFAMLVR 274 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125 D+ + +++A VD + P ++L T + +P Sbjct: 275 DLDVARRYAYVDDTEATVLSG--PARPIVLLRRRDTAAVADSVAPGSPLLGLMLPYSPIH 332 Query: 126 KLIETYG----HPL----AIPSANRSGQISITNVKHILSSSICKEIPLIID 168 L+ P+ + SANRS + + ++D Sbjct: 333 HLLLAPVPGGRGPVPDALVLTSANRSDEPICFTDADAAR-RLSPLCDAVLD 382 >gi|47208459|emb|CAF93771.1| unnamed protein product [Tetraodon nigroviridis] Length = 68 Score = 50.1 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 4/68 (5%) Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI--SKIGLESTIVNVQCEK 187 G PLA+ SAN S S V + ++ +++DGG + L ST+V++ Sbjct: 2 MCGEPLALTSANISSHTSTVAVHE--FQELWPKLSVVVDGGPIRGQSRLGSTVVDLSTPG 59 Query: 188 KVRILRPG 195 K RI+R G Sbjct: 60 KYRIIRNG 67 >gi|114706042|ref|ZP_01438945.1| hypothetical protein FP2506_16289 [Fulvimarina pelagi HTCC2506] gi|114538888|gb|EAU42009.1| hypothetical protein FP2506_16289 [Fulvimarina pelagi HTCC2506] Length = 261 Score = 50.1 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 57/166 (34%), Gaps = 18/166 (10%) Query: 17 EFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75 + L G I PT+ Y + V + + R ++ K R P + + +K A Sbjct: 20 DILTRGGGMIVSPTKVGYIIMVS--DKGGLERKFDAKVRKRNKPGVVLCGSMEELKSLAE 77 Query: 76 VDPLSLHLAKLFWPGPLTL--VLDLL-------STTDIHPLSTANLKTACFRV-----PC 121 ++P + W + L +L +T+CF + Sbjct: 78 MNPEIEAFYQAHWDRNILLGCILPWKKEAISKIPDDGSRDFVMDGRETSCFVIRFGTPSE 137 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 + L +G SAN SG+ + V+ + I E LII Sbjct: 138 QLAEALWRDHGKLAFASSANPSGKGNRGLVEG-IGDRIEAEADLII 182 >gi|126434709|ref|YP_001070400.1| (NiFe) hydrogenase maturation protein HypF [Mycobacterium sp. JLS] gi|126234509|gb|ABN97909.1| (NiFe) hydrogenase maturation protein HypF [Mycobacterium sp. JLS] Length = 752 Score = 49.7 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 32/149 (21%), Positives = 52/149 (34%), Gaps = 25/149 (16%) Query: 21 AGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75 G +A V Y LA D+ N TA+ L K+R P V D + + A Sbjct: 207 DGGVVA-----VKGIGGYHLACDAENNTAVAELRRRKQRG-DKPFAVMVPDAAAAGRIAV 260 Query: 76 VDPLSLHLAKLFWP-GPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHP 134 +D ++ H+ P P+ L TT ++ N + L+ +G P Sbjct: 261 LDEVAQHVLGG--PQRPIVLAPRRTPTTVAAAVAPGNPD-LGVLLAYSPLHTLL--FGLP 315 Query: 135 --------LAIPSANRSGQISITNVKHIL 155 L + S N +G+ + Sbjct: 316 GDEPGPQVLVMTSGNLAGEPLCYADDDAV 344 >gi|38637737|ref|NP_942711.1| HypF3 [Ralstonia eutropha H16] gi|32527075|gb|AAP85825.1| HypF3 [Ralstonia eutropha H16] Length = 796 Score = 49.7 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 56/151 (37%), Gaps = 17/151 (11%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 +A+R A L G +AI G+ D+ NP A+ RL + KR P Sbjct: 195 PDDAIRAAWALLRDGGIVAIK-----GIGGFQLACDACNPVAVARLRQR-KRRERKPFAL 248 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS---TTDIHPLSTANLKTACFRV 119 D++++++++ L + P +++ S + P + F + Sbjct: 249 MARDLAVIRQYSEPTAAECGLLQS--PAAPIVIVQTRSDRQGAPLAPDVAPGIAALGFML 306 Query: 120 PCGFTKKLIET-YGHPLAIPSANRSGQISIT 149 P L+ P+ + S N S + T Sbjct: 307 PGTPLHWLLMAMADRPIVLTSGNASDEPQCT 337 >gi|300919258|ref|ZP_07135779.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS 115-1] gi|300413650|gb|EFJ96960.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS 115-1] Length = 766 Score = 49.7 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + A P ++ L P + Sbjct: 242 LACDARNSNAVATLRARKHRPA-KPLAVML-------LVADGLPDAVRQL-LTTPAAPIV 292 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ L +P L++ PL + S N SG+ + + Sbjct: 293 LVDKKYVPELCDDIAPGLNEVGAMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 352 Query: 154 ILSS 157 L+ Sbjct: 353 ALAD 356 >gi|158316617|ref|YP_001509125.1| (NiFe) hydrogenase maturation protein HypF [Frankia sp. EAN1pec] gi|158112022|gb|ABW14219.1| (NiFe) hydrogenase maturation protein HypF [Frankia sp. EAN1pec] Length = 795 Score = 49.7 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 34/122 (27%), Gaps = 11/122 (9%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA + + A+ L K RP P V D++ + A + L P+ L Sbjct: 247 LACGADDSRAVELLRARKGRP-DRPFAVMVRDLATAAEMADLSAAEAELLTSTA-APIVL 304 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET--------YGHPLAIPSANRSGQI 146 + +P L+ L + S NRSG Sbjct: 305 A-RRRPGAPLSDRVAPGSPLVGLLLPYTPVHHLLFAPVPGGGPPPPRALVMTSGNRSGDP 363 Query: 147 SI 148 Sbjct: 364 IC 365 >gi|148273644|ref|YP_001223205.1| hypothetical protein CMM_2461 [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831574|emb|CAN02542.1| conserved hypothetical protein [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 260 Score = 49.7 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 30/169 (17%), Positives = 64/169 (37%), Gaps = 17/169 (10%) Query: 13 RKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +A + L+A G + T+ Y L + T + R ++ K+R P + + I ++ Sbjct: 16 ERAAQALEAPGGLVVAATKVGYILMT--TDGTGLERKFDAKQRNRDKPGVVLCTSIEQLQ 73 Query: 72 KHASVDPLSLHLAKLFWPGPL---TLVLDLLSTTDIHPLSTAN------LKTACFRV--- 119 + A ++ L + W + ++ + P A T+CF + Sbjct: 74 ELAVLNDEILAFYQEHWDADVLLGCILPWREDAKHLIPDEVAGQLAMDRRGTSCFVIRFG 133 Query: 120 -PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 P + + SAN SG+ + V+ + I ++ +I+ Sbjct: 134 RPAEQLAERLWESRRLSFASSANPSGKGNRGRVEG-IGERIEQQADVIV 181 >gi|15004849|ref|NP_149309.1| hypothetical protein CA_P0146 [Clostridium acetobutylicum ATCC 824] gi|14994461|gb|AAK76891.1|AE001438_144 HypF homolog [Clostridium acetobutylicum ATCC 824] Length = 477 Score = 49.7 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 53/128 (41%), Gaps = 7/128 (5%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTET--VYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 +I N + KA + L + +AI +T Y L + ++ AI L K R P Sbjct: 48 AINSLNIIEKAYKLLKSANILAIK-DTGGFY-LICNGKSRAAINTLRRRKMR-QSKPFAV 104 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 + DI V++ V + + P+ ++LD + ++ + NLK+ +P Sbjct: 105 MMKDIYTVREFCEVHSEEKKVLESS-ERPI-VILDKKPSLNLPNNISPNLKSIGVMLPFS 162 Query: 123 FTKKLIET 130 +L+ Sbjct: 163 PISRLMLQ 170 >gi|83376058|gb|ABC17839.1| HypF [Bradyrhizobium sp. UPM1029] Length = 752 Score = 49.3 bits (117), Expect = 8e-04, Method: Composition-based stats. Identities = 35/145 (24%), Positives = 51/145 (35%), Gaps = 16/145 (11%) Query: 33 YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPL 92 Y L D+R+ A++RL + K+R P V + V A D + P P+ Sbjct: 219 YQLVCDARDEAAVQRLRQRKQRGQ-KPFAVMVGSVEAVAGIADAD-AAELALLETSPRPI 276 Query: 93 TLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI---ETYGHPLA-------IPSANR 142 L L S + P L +P LI HPLA SAN Sbjct: 277 VL---LTSRHRLSPAIAPELARIGIALPVTPLLHLIFEALDAAHPLAGESWAIVATSANP 333 Query: 143 SGQISITNVKHILSSSICKEIPLII 167 G+ + + + + LII Sbjct: 334 GGEPLLIDNREA-ELRLAGIADLII 357 >gi|13508101|ref|NP_110050.1| HemK family methylase [Mycoplasma pneumoniae M129] gi|2496353|sp|P75419|Y362_MYCPN RecName: Full=Uncharacterized protein MG259 homolog gi|1674165|gb|AAB96122.1| hemk family protein [Mycoplasma pneumoniae M129] gi|301633681|gb|ADK87235.1| methyltransferase, HemK family [Mycoplasma pneumoniae FH] Length = 453 Score = 49.3 bits (117), Expect = 8e-04, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 46/118 (38%), Gaps = 17/118 (14%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLA--VDSRNPTAIRRLYEIKKRPAMNPL 60 ++ I + ++ LD G+ IPT+T GL + L IK+R Sbjct: 273 VLKIAQTKQIK---ALLDKGMTAIIPTDTQIGLMSYCQ-------QDLDHIKQRDPNKHY 322 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS-TTDIHPLSTANLKTACF 117 + ++ S + + LAKLFWPG T ++D S P LKT Sbjct: 323 VQFLA-PSQINQL---PKQLQKLAKLFWPGAYTFIVDGQSYRLPNSPQLLKLLKTVGL 376 >gi|290962981|ref|YP_003494163.1| hydrogenase maturation protein [Streptomyces scabiei 87.22] gi|260652507|emb|CBG75640.1| Putative hydrogenase maturation protein [Streptomyces scabiei 87.22] Length = 797 Score = 49.3 bits (117), Expect = 8e-04, Method: Composition-based stats. Identities = 38/196 (19%), Positives = 57/196 (29%), Gaps = 21/196 (10%) Query: 15 ACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69 A L G +A V Y LA D+ NP A+ L K R P Sbjct: 223 ARALLARGAILA-----VKGLGGYHLACDATNPAAVALLRRRKARG-DKPFAVMARTTDD 276 Query: 70 VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP---LSTANLKTACFRVP----CG 122 V+ + L + P+ LV L T +P Sbjct: 277 VRHLVRLSAEERGLLEDAA-RPVVLVRRLPDTPGEPRPAEAVAPGSPDLGLMLPYTPLHH 335 Query: 123 FTKKLIETYGHP--LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 L P L + S N SG+ +T+ L + + + ++ Sbjct: 336 LLLGLPGDPDGPRLLVMTSGNVSGEPIVTDDTEALERLAHLADAWLTHDRPIHVPCDDSV 395 Query: 181 VNVQCEKKVRILRPGG 196 V V + + I R G Sbjct: 396 VRVCDGQPLVIRRSRG 411 >gi|296137508|ref|YP_003644750.1| (NiFe) hydrogenase maturation protein HypF [Thiomonas intermedia K12] gi|295797630|gb|ADG32420.1| (NiFe) hydrogenase maturation protein HypF [Thiomonas intermedia K12] Length = 763 Score = 48.9 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 54/298 (18%), Positives = 96/298 (32%), Gaps = 46/298 (15%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 + + A + L AG +AI G+ VD+ A+ RL K+RP PL Sbjct: 188 DPIATAVDLLRAGRILAIK-----GIGSFHLVVDATAADAVARLRARKRRP-HKPLALMA 241 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123 D+ +V+++A++ P ++L+ + + + F +P Sbjct: 242 RDLDVVRRYAALTSDDERALSG--PAAPVVLLEATEPHALPYAIAPDTRLLGFMLPMSPL 299 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 L+ ++ PL S N SG + L + + I+N Sbjct: 300 HHLLLASFDTPLVFTSGNASGAPPCIDNAEAL-DRLDDIADAYLLHDRP-------ILNR 351 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243 + +LR ++ L+R+ +PG L P A V Sbjct: 352 LDDS---VLRRIAGTLQPLRRSRGY-------------APGAL-----PLPHGFGDAPAV 390 Query: 244 NPREALIRFGNVPIKNIENAIISL--NLSKTGKLKEAAFNLFNYMKIADDSGASSIAF 299 A ++ + + +L T EAA L + D IA Sbjct: 391 TALGAELKNTACLLAGGRAILSQHFGDLGGTSAAAEAARGL-ERLSQLFDHDPDIIAV 447 >gi|260662047|ref|ZP_05862943.1| conserved hypothetical protein [Lactobacillus fermentum 28-3-CHN] gi|260553430|gb|EEX26322.1| conserved hypothetical protein [Lactobacillus fermentum 28-3-CHN] Length = 257 Score = 48.9 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 53/165 (32%), Gaps = 17/165 (10%) Query: 20 DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL 79 G I PT+ Y + + + R ++ K+R P + + +++ A + P Sbjct: 21 QDGKMIVSPTKVGYIIMT--TDKAGLERKFDAKQRNRNKPGVVLCGSMEQLEELAEMTPK 78 Query: 80 SLHLAKLFWPGP--LTLVLDLLSTT-------DIHPLSTANLKTACFRV-----PCGFTK 125 L + W L +L L T T+CF + Sbjct: 79 IRDLYQTHWDQDVLLGCILPWKQKAREKYLGDGREELMTDRRGTSCFVIRYGTPSEQLAD 138 Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 + + SAN SG+ + V + I L+I+ Sbjct: 139 YFWKKEHKMIYASSANPSGKGNRGKVAG-IGDRIENAADLVIEAD 182 >gi|218661955|ref|ZP_03517885.1| (NiFe) hydrogenase maturation protein HypF [Rhizobium etli IE4771] Length = 432 Score = 48.5 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 58/169 (34%), Gaps = 23/169 (13%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 + + L +G +A+ G+ D+RN AI L K R P V D Sbjct: 199 VAEVAARLASGKIVALK-----GIGGFHLLCDARNNAAIGLLRLRKSRHQ-KPFAVMVRD 252 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126 I ++ A + L + P+ LV L + L NL + Sbjct: 253 IEAARRLARLTATEEALL-MSAAAPIVLVEPLAGQS--FDLIAPNLARIGIMLAYAPVHH 309 Query: 127 LI-------ETYGHP-LAIPSANRSGQISITNVKHILSSSICKEIPLII 167 L+ ++G P L SAN S + I + + + LI+ Sbjct: 310 LLFDALVTPASHGPPALVATSANPSEEPLIADNADA-ERRLGEIADLIV 357 >gi|167627035|ref|YP_001677535.1| hydrogenase maturation protein HypF [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597036|gb|ABZ87034.1| hydrogenase maturation protein HypF [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 751 Score = 48.5 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 45/216 (20%), Positives = 83/216 (38%), Gaps = 29/216 (13%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S++ + + + AG IAI ++ + L VD+ N A+ +L K RP P + Sbjct: 189 SHSFAEISQAIRAGKIIAIKSQNGFKLVVDATNTEAVEKLRRRKHRP-NKPFALMALNTQ 247 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC------- 121 +++H + P+ ++L ST+ I ++ F +P Sbjct: 248 SIQEHFAEVTTQQDELLNTTIRPI-VLLKRHSTSTISSSIAPHINQLGFMLPTTGSDYIL 306 Query: 122 --------GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173 + L E Y L + SAN SG+ I N + LI+ Sbjct: 307 FYHLLNQPNSSSWLNEAYNLALIVTSANISGESIIANNDEA-HEKLKDIADLIVTDNR-D 364 Query: 174 IGLES------TIVNVQCEKKVRILRPGGLEIETLK 203 I ++S T+++ K + I R GL ++++ Sbjct: 365 IAIKSDDSVFHTVID----KNLPIRRSRGLVPQSIQ 396 >gi|29833917|ref|NP_828551.1| [NiFe] hydrogenase maturation protein [Streptomyces avermitilis MA-4680] gi|29611042|dbj|BAC75086.1| putative [NiFe] hydrogenase maturation protein [Streptomyces avermitilis MA-4680] Length = 788 Score = 48.5 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 38/212 (17%), Positives = 67/212 (31%), Gaps = 30/212 (14%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNP 59 S+ ++ + +A L G +A V Y LA D+ +P A+ L K R P Sbjct: 202 SVAGADPVTEARTLLARGAILA-----VKGLGGYHLACDASDPAAVALLRRRKARG-DKP 255 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP--------LSTAN 111 ++ + P L + G +VL T +P Sbjct: 256 FAVMARSADDIEHLVRLGPEERSLLEG---GTRPVVLLRRRTDPSYPAGAPRPAEAVAPG 312 Query: 112 LKTACFRVP----CGFTKKLIETYGHP--LAIPSANRSGQISITNVKHILSSSICKEIP- 164 +P L P L + S N +G+ +T+ L + Sbjct: 313 SPDLGVMLPYTPLHHLLLGLPGDAEGPRLLVMTSGNVAGEPIVTDDAEAL-ERLAPLADA 371 Query: 165 LIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196 + ++ + ++V V K + I R G Sbjct: 372 WLTHDRPIQVPCDDSVVRVSDGKPLMIRRARG 403 >gi|332296266|ref|YP_004438189.1| Acylphosphatase [Thermodesulfobium narugense DSM 14796] gi|332179369|gb|AEE15058.1| Acylphosphatase [Thermodesulfobium narugense DSM 14796] Length = 759 Score = 48.1 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 33/167 (19%), Positives = 60/167 (35%), Gaps = 17/167 (10%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYG-----LAVDSRNPTAIRRLYEIKKRPAMNPLICH 63 + +++ L G IAI G LAVD++N A+ L + K+RP P Sbjct: 202 DDVVQETYNLLMKGKIIAIK-----GVGGFHLAVDAKNDEAVLELRKRKRRP-FKPFALM 255 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLV-LDLLSTTDIHPLSTANLKTACFRVPCG 122 ++I +K L L P+ L+ ++ I +L +P Sbjct: 256 -ANIETIKDFLYTTKKELELLTS-RARPIVLLKQKEIALEKISKYIAPHLTYIGIMLPYT 313 Query: 123 FTKKLIETYGHPLAI--PSANRSGQISITNVKHILSSSICKEIPLII 167 + L+ G + + SAN S + + + +C + Sbjct: 314 PFQYLLFDKGKSMVLVMTSANLSDEPIVYKD-DVAFEKLCNIADYFV 359 >gi|183981875|ref|YP_001850166.1| hydrogenase maturation factor, HypF [Mycobacterium marinum M] gi|183175201|gb|ACC40311.1| hydrogenase maturation factor, HypF [Mycobacterium marinum M] Length = 796 Score = 47.7 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 24/146 (16%), Positives = 44/146 (30%), Gaps = 16/146 (10%) Query: 33 YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPL 92 Y LA + + L K R A P V D+ + +++A +D GP Sbjct: 239 YHLACAVDDDAVVGVLRSCKSRGA-KPFAILVRDLDVARRYAFIDDAEA----AVLSGPA 293 Query: 93 --TLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYG--------HPLAIPSANR 142 ++L + + +P L+ L + SANR Sbjct: 294 RPIVLLRRRPDAPVADAVASGSPLLGLMLPYSPIHHLLLAPVPGADAAAPEALVLTSANR 353 Query: 143 SGQISITNVKHILSSSICKEIPLIID 168 S + + + ++D Sbjct: 354 SDEPICFTESDA-AERLSMLCDAVLD 378 >gi|111221826|ref|YP_712620.1| [NiFe] hydrogenase maturation protein HypF [Frankia alni ACN14a] gi|111149358|emb|CAJ61046.1| [NiFe] hydrogenase maturation protein HypF [Frankia alni ACN14a] Length = 793 Score = 47.7 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 1/53 (1%) Query: 33 YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAK 85 Y LA + + A+ L K+R P V+D++ ++ A VD L Sbjct: 221 YHLACLATDEAAVATLRRRKRRG-DKPFAVMVADLTAARRLAQVDQAEAALLA 272 >gi|254498963|ref|ZP_05111666.1| hydrogenase maturation protein HypF [Legionella drancourtii LLAP12] gi|254351821|gb|EET10653.1| hydrogenase maturation protein HypF [Legionella drancourtii LLAP12] Length = 744 Score = 47.7 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 43/123 (34%), Gaps = 14/123 (11%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 + + + G IA+ GL D+RN + +L E K R A PL V++ Sbjct: 190 VENIAQRILQGEIIALK-----GLGGYQLICDARNEITLLKLRERKNR-ATKPLALMVAN 243 Query: 67 ISMVKKHASVDPLSLHLAKLFWP-GPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125 ++ ++ + L + P P+ L+ + L +P Sbjct: 244 SKSAEQIVAISEQAQILLER--PARPIVLLQKKNGVSRSIDKIAPGLSHLGVMLPYTPLH 301 Query: 126 KLI 128 L+ Sbjct: 302 YLL 304 >gi|182416319|ref|YP_001821385.1| (NiFe) hydrogenase maturation protein HypF [Opitutus terrae PB90-1] gi|177843533|gb|ACB77785.1| (NiFe) hydrogenase maturation protein HypF [Opitutus terrae PB90-1] Length = 788 Score = 47.7 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 33/184 (17%), Positives = 59/184 (32%), Gaps = 14/184 (7%) Query: 19 LDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 L G +A V G+ D N TA+ L K R PL ++ V++ Sbjct: 239 LLHGNIVA-----VKGIGGFHLLADGTNETAVAELRRRKHR-EEKPLAVMFPSLAAVREM 292 Query: 74 ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGH 133 A + P+ LV ++ N F K L++ Sbjct: 293 AELSEEEERQLTSAA-APIVLVRRRPGAALAVSIAPGNPCVGAFLPYTPLHKLLLDACAR 351 Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIVNVQCEKKVRIL 192 PL S N + + T + + L + + ++ +++ V + V + Sbjct: 352 PLVATSGNLAEEPLCTGNVEA-RERLGRIADLFLTHNRAIARPIDDSVIRVARDGPVLLR 410 Query: 193 RPGG 196 R G Sbjct: 411 RARG 414 >gi|118469158|ref|YP_886625.1| [NiFe] hydrogenase maturation protein HypF [Mycobacterium smegmatis str. MC2 155] gi|118170445|gb|ABK71341.1| [NiFe] hydrogenase maturation protein HypF [Mycobacterium smegmatis str. MC2 155] Length = 762 Score = 47.7 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 30/168 (17%), Positives = 55/168 (32%), Gaps = 12/168 (7%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA + + T + L K RPA P V+D+ ++ A + + P+ L Sbjct: 224 LACVATDTTTVAELRRRKNRPA-KPFAVMVADLGAARRIADISAAAAAELSSPA-APIVL 281 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAI--PSANRSGQISITNVK 152 V T + L+ + L+ P+ + SAN G + + Sbjct: 282 VPGRDDT--VRDAVAPGLRDVGVMLAYSPVHHLLFDRLGPVVLVMTSANAGGSPIVYRDE 339 Query: 153 HILSSSICKEIPLII--DGGISKIGLES--TIVNVQCEKKVRILRPGG 196 + I ++ D I +S T+ + +R R Sbjct: 340 DL--HWIDGLADAVLSHDRPIHVPCEDSVLTVTDDGHTVPIRRSRGFA 385 >gi|269128773|ref|YP_003302143.1| (NiFe) hydrogenase maturation protein HypF [Thermomonospora curvata DSM 43183] gi|268313731|gb|ACZ00106.1| (NiFe) hydrogenase maturation protein HypF [Thermomonospora curvata DSM 43183] Length = 774 Score = 47.7 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 27/195 (13%), Positives = 59/195 (30%), Gaps = 18/195 (9%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICHV 64 + + A L G +AI GL + A+ L K R P Sbjct: 220 DPIVAAARRLHDGKILAIK-----GLGGYHLAVRADLERAVAALRARKHR-EDKPFAIMA 273 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPL--TLVLDLLSTTDIHPLSTANLKTACFRVP-C 121 +D++ + ++ + + GP ++L + + +P Sbjct: 274 ADLAAARTLVRLEEGA----ERALTGPARPIVLLPRRVDAPVAESVAPGARELGVMLPYT 329 Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181 L G P + S N S + + L ++ ++ + ++V Sbjct: 330 PLHHLLARRLGRPFVLTSGNLSDEPIAYRDEDALQRLAPVADAFLVHDRPIQVRTDDSVV 389 Query: 182 NVQCEKKVRILRPGG 196 + + + + R G Sbjct: 390 RLFRGRVLPVRRSRG 404 >gi|297619752|ref|YP_003707857.1| (NiFe) hydrogenase maturation protein HypF [Methanococcus voltae A3] gi|297378729|gb|ADI36884.1| (NiFe) hydrogenase maturation protein HypF [Methanococcus voltae A3] Length = 830 Score = 47.4 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 33/207 (15%), Positives = 72/207 (34%), Gaps = 26/207 (12%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKR--PAMNPLI 61 +A++KA E L+ G +AI G+ D+ N A + E++KR Sbjct: 216 ESAIKKAVELLEDGKILAIK-----GIGGTHLVCDANNDDA---ILELRKRLNRPTQAFA 267 Query: 62 CHVSDIS--MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLST--TDIHPLSTANLKTACF 117 ++ + K ++ +L+ + P+ + L + +NL T Sbjct: 268 IMSTEEKYPLFSKFTKIEEEALNSYRR----PI-VALKKKENGYNKYISENISNLDTVGV 322 Query: 118 RVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL- 176 +P L+ + SAN G I+ S+ + + Sbjct: 323 MLPYSGLHYLLFGKCTAYVMTSANLPGLPMAITNDKII-ESLKDIADYFLLHNRDIVNRC 381 Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLK 203 + +++ + + + + R G E ++ Sbjct: 382 DDSVLKLISNRMMILRRSRGYAPEPIE 408 >gi|238788873|ref|ZP_04632663.1| Ribosomal modification protein RimN [Yersinia frederiksenii ATCC 33641] gi|238722900|gb|EEQ14550.1| Ribosomal modification protein RimN [Yersinia frederiksenii ATCC 33641] Length = 73 Score = 47.4 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 2/70 (2%) Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 ++L YG PL SAN SGQ V+ + +P ++ G + S I Sbjct: 4 HPLVQQLCLQYGKPLVSTSANLSGQEPCRTVEEV-RMQFGPSLP-VLVGQVGGRLNPSEI 61 Query: 181 VNVQCEKKVR 190 + K+ R Sbjct: 62 RDALTGKQFR 71 >gi|34558425|ref|NP_908240.1| hypothetical protein WS2146 [Wolinella succinogenes DSM 1740] gi|34484144|emb|CAE11140.1| conserved hypothetical protein [Wolinella succinogenes] Length = 147 Score = 47.4 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 65/158 (41%), Gaps = 34/158 (21%) Query: 29 TETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFW 88 T+T GL S++P RL +K RP+ P++ + +S +K+ + V L +L + Sbjct: 11 TDTTVGL--LSQDPH---RLAALKSRPSQKPILLTLDSLSALKRFSRVPLLFRNLVRR-- 63 Query: 89 PGPLTLVLDLLSTTDIHPLSTANLKTACFRV---PCGFTKKLIETYGHPLAIPSANRSGQ 145 ++ ++P A RV P ++ +E +G+ L SAN SG Sbjct: 64 ---------SNKSSFVYPNG------AGIRVVKEPRH--RRFLERFGY-LYSTSANPSGG 105 Query: 146 ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 + + ++ + G+ + G S I + Sbjct: 106 VFSLEFGERACDIM-----VLDEAGLCE-GQPSKIWRL 137 >gi|290953762|ref|ZP_06558383.1| transposase [Francisella tularensis subsp. holarctica URFT1] gi|295312885|ref|ZP_06803611.1| transposase [Francisella tularensis subsp. holarctica URFT1] Length = 86 Score = 47.4 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 3/87 (3%) Query: 115 ACFRVPCGFTKKLIET-YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173 RV + + I G PL I S G + + S I + +++ Sbjct: 1 VGIRVSEHYVPRAISAEIGEPLVISSFIVPGHQHVVTDCDEVDSQIMNYLDAVVESDYCG 60 Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIE 200 L +T+V + E +ILR G EI+ Sbjct: 61 YDL-TTVVELL-ELPYQILRQGAGEID 85 >gi|213616379|ref|ZP_03372205.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 245 Score = 47.4 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 40/118 (33%), Gaps = 10/118 (8%) Query: 41 NPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS 100 N A+ L K RPA PL + + P + + L P +++D Sbjct: 1 NDNAVAMLRARKHRPA-KPLAVMLPTAQTL-------PTAAR-SLLTTPAAPIVLVDKQY 51 Query: 101 TTDIHPLSTANLKTACFRVPCGFTKK-LIETYGHPLAIPSANRSGQISITNVKHILSS 157 + L +P + L++ +PL + S N SG+ + L Sbjct: 52 VPSLSEGIAPGLTEVGVMLPANPLQHLLLQALNYPLVMTSGNLSGKPPAITNEQALDD 109 >gi|323159864|gb|EFZ45835.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli E128010] Length = 516 Score = 47.0 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 45/124 (36%), Gaps = 10/124 (8%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L K RPA PL + A P + L P + Sbjct: 210 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 260 Query: 95 VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153 ++D ++ +L +P L++ L + S N SG+ + + Sbjct: 261 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCLLVMTSGNLSGKPPAISNEQ 320 Query: 154 ILSS 157 L+ Sbjct: 321 ALAD 324 >gi|239614287|gb|EEQ91274.1| conserved hypothetical protein [Ajellomyces dermatitidis ER-3] Length = 250 Score = 47.0 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 35/176 (19%), Positives = 66/176 (37%), Gaps = 22/176 (12%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 ++A L +G I PT+ Y L I+R++ K R + I + ++ Sbjct: 20 QQAYGTLKSGGVIIAPTDVGYALMTS--TQEGIQRIFASKLRQPNHN-IGIIGTYRQHRE 76 Query: 73 HASVDPLSLHLAKLFWP--GPLTLVLDLLSTTDIHPLSTA----------NLKTACFRVP 120 + + ++ G + ++ ++ +HP A T VP Sbjct: 77 LHVLPESKFEMTRVVTEDLGMIVGLIAKFNSHSLHPRLAALDKATFSQVTKGDTISIAVP 136 Query: 121 CG-FTKKLIETY-----GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 G F ++L G + SAN +GQ V+ + S+ + + LI+D G Sbjct: 137 EGRFLQELGRLCDEDPQGILMFGTSANLTGQGQRFRVED-IEPSVRESVDLIVDYG 191 >gi|260893840|ref|YP_003239937.1| (NiFe) hydrogenase maturation protein HypF [Ammonifex degensii KC4] gi|260865981|gb|ACX53087.1| (NiFe) hydrogenase maturation protein HypF [Ammonifex degensii KC4] Length = 773 Score = 47.0 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 39/194 (20%), Positives = 65/194 (33%), Gaps = 16/194 (8%) Query: 17 EFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 E L AG +AI GL D+ P + L K+RP PL D+ +V+ Sbjct: 221 ELLRAGKILAIK-----GLGGFHLCCDALEPRVVALLRRRKRRP-HKPLAVMARDLEVVR 274 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130 + + P+ L P +VL + LKT +P L++ Sbjct: 275 RFCELGPVEEELLTS--PAAPIVVLKRRPEAGLPEELAPGLKTLGVMLPYTPLHLLLLQG 332 Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL-ESTIVNVQCEKKV 189 L + S NRSG + + + + + + ++V V Sbjct: 333 PLPLLVMTSGNRSGLPLCKDNERAW-EELGDIADYFLIHNRDIVNRCDDSVVAVMGGIPA 391 Query: 190 RILRPGGLEIETLK 203 R G + +K Sbjct: 392 FYRRSRGYVPQPVK 405 >gi|327356340|gb|EGE85197.1| hypothetical protein BDDG_08142 [Ajellomyces dermatitidis ATCC 18188] Length = 250 Score = 47.0 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 35/176 (19%), Positives = 66/176 (37%), Gaps = 22/176 (12%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 ++A L +G I PT+ Y L I+R++ K R + I + ++ Sbjct: 20 QQAYGTLKSGGVIIAPTDVGYALMTS--TQEGIQRIFASKLRQPNHN-IGIIGTYRQHRE 76 Query: 73 HASVDPLSLHLAKLFWP--GPLTLVLDLLSTTDIHPLSTA----------NLKTACFRVP 120 + + ++ G + ++ ++ +HP A T VP Sbjct: 77 LHVLPESKFEMTRVVTEDLGMIVGLIAKFNSHSLHPRLAALDKATFSQVTKGDTISIAVP 136 Query: 121 CG-FTKKLIETY-----GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 G F ++L G + SAN +GQ V+ + S+ + + LI+D G Sbjct: 137 EGRFLQELGRLCDEDPQGILMFGTSANLTGQGQRFRVED-IEPSVRESVDLIVDYG 191 >gi|186474327|ref|YP_001863298.1| SUA5/yciO/yrdC domain-containing protein [Burkholderia phymatum STM815] gi|184198286|gb|ACC76248.1| SUA5/yciO/yrdC domain [Burkholderia phymatum STM815] Length = 769 Score = 47.0 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 65/175 (37%), Gaps = 23/175 (13%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNP 59 S + + + +A + G +A V + L + NP A+ RL E K+RP P Sbjct: 203 SGSPMDPVARAWATIARGEIVA-----VKRLDGFQLICHATNPAAVERLRERKRRP-TKP 256 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL------VLDLLSTTDIHPLSTANLK 113 L V ++ + + S P+ + + +L +T I L + Sbjct: 257 LALLVPKVASAAQWVDLGDASNAKLLASAIRPIVVSRRLNRLGPMLPSTPIQYLLFHRAQ 316 Query: 114 TACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 P G T+ L E SAN SG+ +++ + ++ ++D Sbjct: 317 GL----PSG-TRWLGEAQPTIRVPASANLSGEPLLSDSADV-GEALADIANAVLD 365 >gi|188590247|ref|YP_001920987.1| [NiFe] hydrogenase maturation protein HypF [Clostridium botulinum E3 str. Alaska E43] gi|188500528|gb|ACD53664.1| [NiFe] hydrogenase maturation protein HypF [Clostridium botulinum E3 str. Alaska E43] Length = 783 Score = 47.0 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 48/129 (37%), Gaps = 14/129 (10%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59 I + LR ++L AG IA+ G+ D +N ++I L + K RP P Sbjct: 198 KIKCDDILRITRQYLKAGRIIALK-----GIGGFNLICDGKNKSSIDVLRKRKNRP-KKP 251 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 L + DI +V K+ V+ + + P ++L ++ + Sbjct: 252 LALMMRDIDVVNKYCFVNEKENEILQGS-KKP--IILLNKRENNLPQNIVFKNNKLGIVI 308 Query: 120 PCGFTKKLI 128 P L+ Sbjct: 309 PYSPLHVLL 317 >gi|284162330|ref|YP_003400953.1| (NiFe) hydrogenase maturation protein HypF [Archaeoglobus profundus DSM 5631] gi|284012327|gb|ADB58280.1| (NiFe) hydrogenase maturation protein HypF [Archaeoglobus profundus DSM 5631] Length = 753 Score = 47.0 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 54/152 (35%), Gaps = 23/152 (15%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA----VDSRNPTAIRRLYEIK-KRPAMNPLICHV 64 +A+ +A E +D G +AI G+ + + +L + K RP P Sbjct: 195 DAIIRAAELIDEGRMVAIK-----GIGGYHIACITDDDVVFKLRD-KLGRPQ-QPFAIMA 247 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTT--DIHPLSTANLKTACFRVPCG 122 ++ +V+K A V + P+T++ + P L T +P Sbjct: 248 RNLEVVRKVAYVSEDEEREMTSYI-RPITVLKKRNPNEFFAVAPY----LNTIGVMLPYS 302 Query: 123 FTKKLI---ETYGHPLAIPSANRSGQISITNV 151 ++ + + SAN+ G+ + Sbjct: 303 PLHYILFNYLKSDF-IVMTSANKPGEPMYIDD 333 >gi|170017837|ref|YP_001728756.1| putative translation factor (SUA5) [Leuconostoc citreum KM20] gi|169804694|gb|ACA83312.1| Putative translation factor (SUA5) [Leuconostoc citreum KM20] Length = 264 Score = 47.0 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 3/77 (3%) Query: 13 RKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 +A L A G I PT+ Y + + + R + K R P + ++ VK Sbjct: 19 EEAITILKAAGGMIVSPTKVGYIIMTS--DKQGLERKFSAKNRRRNKPGVVLCGSMAQVK 76 Query: 72 KHASVDPLSLHLAKLFW 88 A + P + + W Sbjct: 77 ALAQMTPEIEQMYQKHW 93 >gi|295106306|emb|CBL03849.1| Hydrogenase maturation factor [Gordonibacter pamelaeae 7-10-1-b] Length = 307 Score = 46.6 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 12/78 (15%) Query: 8 DSNAL-RKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLI 61 +S+A+ +A E L AG +A V GL D+ N A+ L +KR Sbjct: 236 ESDAILARAVELLCAGKILA-----VKGLGGFHLVCDANNADAVA-LLRARKRREGKAFA 289 Query: 62 CHVSDISMVKKHASVDPL 79 + V++ V Sbjct: 290 VMAATTDDVRRVCEVSDA 307 >gi|65320555|ref|ZP_00393514.1| COG0068: Hydrogenase maturation factor [Bacillus anthracis str. A2012] Length = 305 Score = 46.6 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 11/85 (12%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNP 59 +++ N + K + L G +AI GL D N A++ L + KKR P Sbjct: 203 NVSTDNPIEKTIDLLKKGKILAIK-----GLGGYHLVVDPMNHEAVKELRKRKKRDE-KP 256 Query: 60 LICHVSDISMVKKHASVDPLSLHLA 84 S + VK A + L Sbjct: 257 FALMSSQLDDVKNFAEITKNEETLL 281 >gi|237755703|ref|ZP_04584311.1| Sua5/YciO/YrdC/YwlC family protein [Sulfurihydrogenibium yellowstonense SS-5] gi|237692124|gb|EEP61124.1| Sua5/YciO/YrdC/YwlC family protein [Sulfurihydrogenibium yellowstonense SS-5] Length = 33 Score = 46.6 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 9/26 (34%), Positives = 19/26 (73%) Query: 29 TETVYGLAVDSRNPTAIRRLYEIKKR 54 T+T+YG+ ++ + A+ ++Y IK+R Sbjct: 5 TDTIYGILANALDREAVEKIYVIKER 30 >gi|241667634|ref|ZP_04755212.1| hydrogenase maturation protein HypF [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876179|ref|ZP_05248889.1| predicted protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842200|gb|EET20614.1| predicted protein [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 751 Score = 46.6 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 44/216 (20%), Positives = 83/216 (38%), Gaps = 29/216 (13%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68 S++ + + + AG I I ++ + L VD+ N A+ +L K RP P + Sbjct: 189 SHSFAEISQAIRAGKIIVIKSQNGFKLVVDATNTEAVEKLRRRKHRP-NKPFALMALNTQ 247 Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128 +++H + P+ LV + ST+ I + F +P + ++ Sbjct: 248 SIQEHFATVTTQQDELLNTTIRPIVLV-ERHSTSTISSSIAPRINQLGFMLPTTGSDYIL 306 Query: 129 ---------------ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173 ET+ L + SAN SG+ I N + LI+ Sbjct: 307 FYHLLNQPTGSSWLNETHDLALIVTSANISGESIIANNDEA-HEKLKDIADLIVTDNR-D 364 Query: 174 IGLES------TIVNVQCEKKVRILRPGGLEIETLK 203 I ++S T+++ K + I R GL ++++ Sbjct: 365 IAIKSDDSVFHTVID----KNLPIRRSRGLVPQSIQ 396 >gi|296271181|ref|YP_003653813.1| (NiFe) hydrogenase maturation protein HypF [Thermobispora bispora DSM 43833] gi|296093968|gb|ADG89920.1| (NiFe) hydrogenase maturation protein HypF [Thermobispora bispora DSM 43833] Length = 783 Score = 46.6 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 42/130 (32%), Gaps = 11/130 (8%) Query: 33 YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPL 92 Y LA + + A+R L E K R A D++ ++ A + P A L P Sbjct: 240 YHLACRAADERAVRTLRERKAR-AGKAFAVMARDLATARRLAGIGPAEA--AALTGPAAP 296 Query: 93 TLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHP--------LAIPSANRSG 144 ++L + + +P L+ L + SAN S Sbjct: 297 IVLLTRRPDAPVAEGVAPDNPLIGVMLPYSPLHHLLFAPVPGEAGWVPDVLVMTSANVSD 356 Query: 145 QISITNVKHI 154 + + + Sbjct: 357 EPICFDDEDA 366 >gi|257092366|ref|YP_003166007.1| (NiFe) hydrogenase maturation protein HypF [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044890|gb|ACV34078.1| (NiFe) hydrogenase maturation protein HypF [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 774 Score = 46.2 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 67/229 (29%), Gaps = 29/229 (12%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 + + A L G +AI GL D+RN A+ L E K+R P + Sbjct: 202 DDPIAGALALLQQGKIVAIK-----GLGGFHLACDARNAVAVAVLRERKQRDE-KPFVVM 255 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWP-GPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 +++ + + L P P L+ S + P L +P Sbjct: 256 LANAPSAARLVQMGIGEPGLM--TLPTRPAILLRKRGSCDEALPGVAPGLAWLGVMLPYT 313 Query: 123 FTKKLI--ETYGHP-------------LAIPSANRSGQISITNVKHILSSSICKEIPLII 167 + L+ E P L + SAN G+ + L ++ Sbjct: 314 PLQFLLFHEAAKRPAGLGWLERSQDLALVMTSANPGGEPLVIGNSEALLRLYGIADAFLM 373 Query: 168 DGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDE 216 + ++ + I R G +K +S V Sbjct: 374 HDRDIVTRCDDSVARITTGGLQFIRRARGYTPRAIKMPVSGPSVLAVGA 422 >gi|187932358|ref|YP_001886197.1| [NiFe] hydrogenase maturation protein HypF [Clostridium botulinum B str. Eklund 17B] gi|187720511|gb|ACD21732.1| [NiFe] hydrogenase maturation protein HypF [Clostridium botulinum B str. Eklund 17B] Length = 783 Score = 46.2 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 47/129 (36%), Gaps = 14/129 (10%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59 I + LR ++L G IA+ G+ D +N ++I L + K RP P Sbjct: 198 KIKCDDVLRITRQYLKEGRIIALK-----GIGGFNLICDGKNKSSIDVLRKRKNRPQ-KP 251 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 L + DI +V K+ V+ + + P ++L ++ + Sbjct: 252 LALMMRDIDVVNKYCFVNEKENEILQGS-KKP--IILLNKRENNLPKNIVFKNNKLGIVL 308 Query: 120 PCGFTKKLI 128 P L+ Sbjct: 309 PYSPLHVLL 317 >gi|27262172|gb|AAN87367.1| hydrogenase maturation protein HypF [Heliobacillus mobilis] Length = 705 Score = 46.2 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 47/158 (29%), Gaps = 24/158 (15%) Query: 17 EFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71 + G IA+ GL D RN A+ +L K RP L D+ V+ Sbjct: 212 RMIHQGSIIALK-----GLGGFHLVCDGRNDAAVAKLRRRKNRPY-KALALMARDMDTVR 265 Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD-----------IHPLSTANLKTACFRVP 120 A V L P+ ++ D I KT +P Sbjct: 266 SIAWVSAQEETLLTSSA-APIVILEQKNGCKDLPLGYGTDKGIIPANIAPGTKTVGLMLP 324 Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSS 157 L + L + S N SG + + + L Sbjct: 325 YTPMHHMLFDEQIDLLVMTSGNPSGLPLVRDNEAALDQ 362 >gi|134080391|emb|CAK46312.1| unnamed protein product [Aspergillus niger] Length = 245 Score = 45.8 bits (108), Expect = 0.008, Method: Composition-based stats. Identities = 26/171 (15%), Positives = 59/171 (34%), Gaps = 24/171 (14%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTA-IRRLYEIKKRPAMNPLICHVSDISMVK 71 ++ + L G + IPT+ Y L + A +++++ K R + I + Sbjct: 20 KQTYDTLKNGGVVIIPTDVGYAL---LTSTQAGVQQIFSAKDRREGHN-IGIIGTYKQHY 75 Query: 72 KHASVDPLSLHLAKLFWP--GPLTLVLDLLSTTDIHPLSTA----------NLKTACFRV 119 + + + ++ + ++ T ++HP A T V Sbjct: 76 EIHVLSEAKFEMTRVLTEDMAMIVGIIAKYDTENLHPRLAALDPATLSQVTKGDTVSIAV 135 Query: 120 PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 P G + G + + +GQ V+ + + + L++D G Sbjct: 136 PEGP---FLRELGR---LCDDDPTGQGQRFRVED-IEPKVINAVDLVVDYG 179 >gi|150017850|ref|YP_001310104.1| (NiFe) hydrogenase maturation protein HypF [Clostridium beijerinckii NCIMB 8052] gi|149904315|gb|ABR35148.1| (NiFe) hydrogenase maturation protein HypF [Clostridium beijerinckii NCIMB 8052] Length = 766 Score = 45.8 bits (108), Expect = 0.008, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 42/125 (33%), Gaps = 13/125 (10%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 + +++ ++ G +AI G+ D RN AI L K+R PL Sbjct: 215 EDPIKETISLIEEGKILAIK-----GIGGFHLVCDGRNEQAINLLRSRKQR-KDKPLALM 268 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 DI ++K+ + + P+ ++L + + +P Sbjct: 269 AKDIGVIKEICYISDKEEEVISSN-KRPI-VILKKKYPFVLPEAIAPKQNSLGVMLPYTP 326 Query: 124 TKKLI 128 L+ Sbjct: 327 LHYLL 331 >gi|325957990|ref|YP_004289456.1| Acylphosphatase [Methanobacterium sp. AL-21] gi|325329422|gb|ADZ08484.1| Acylphosphatase [Methanobacterium sp. AL-21] Length = 768 Score = 45.8 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 37/171 (21%), Positives = 59/171 (34%), Gaps = 16/171 (9%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVD----SRNPTAIRRLYEIKKRPAMN 58 I+ I N ++KA E +D G +AI G+ + K R Sbjct: 195 ILKI--ENPIKKAAELIDEGKILAIK-----GIGGTHLVVKTTENGPVDILRQKLRRFNQ 247 Query: 59 PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118 P +I VK A V + + P+ +VL+ S + P + L Sbjct: 248 PFAIMSPNIETVKGFAEVSGVESDTIQSRR-RPI-VVLNKNSNYSLAPSVSPYLHNLGVM 305 Query: 119 VP-CGFTKKLIETYGHPLAI-PSANRSGQISITNVKHILSSSICKEIPLII 167 +P G L P I SAN G+ + N + I+S + + Sbjct: 306 LPYSGLHHLLFSYSTEPAYIMTSANMPGEPMLINNEEIIS-KLDGIADYFL 355 >gi|73667930|ref|YP_303945.1| hydrogenase maturation protein [Methanosarcina barkeri str. Fusaro] gi|72395092|gb|AAZ69365.1| hydrogenase maturation protein [Methanosarcina barkeri str. Fusaro] Length = 767 Score = 45.8 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 38/223 (17%), Positives = 72/223 (32%), Gaps = 33/223 (14%) Query: 10 NALRKACEFLDAGLPIAIPTETVYG---LAVDSRNPTAIRRLYEIKKRPAM--------- 57 A+ A + L G +AI +G +A D+R K+ P Sbjct: 203 EAIIHASDLLQQGSILAIK---GFGGFHIACDAR-----------KEMPVNELRRRLRRP 248 Query: 58 -NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 P + + + A ++ + + P+T VL + + T+ L Sbjct: 249 EQPFAVMAKNAEVAETFAELEGVGREYLTSYR-RPIT-VLPSSRESGLAESVTSGLHNIG 306 Query: 117 FRVPCGFTKKLI--ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLI-IDGGISK 173 +P T+ L+ + SAN G+ + K L + + + + Sbjct: 307 VMLPYTGTQNLLFDRVPDAVYVMTSANLPGRPMVVENKEAL-EKLKGIVDYYLLHNRVIA 365 Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDE 216 + T++ V K I R G E ++ V+ V Sbjct: 366 NRNDDTVIRVVNGKAAFIRRSRGFVPEPVELPFEVKASIGVGA 408 >gi|330863313|emb|CBX73436.1| hypothetical protein YEW_ES20310 [Yersinia enterocolitica W22703] Length = 307 Score = 45.8 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 1/82 (1%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LAVD+ N A+ RL E K RP+ PL + D ++ S + L L P + Sbjct: 227 LAVDATNAVAVARLRERKHRPS-KPLAVMLPDADWLQSCVSSADHTALLGLLRSPAAPIV 285 Query: 95 VLDLLSTTDIHPLSTANLKTAC 116 ++ + + L Sbjct: 286 LVAKQPESPLCVAVAPELPELA 307 >gi|261204349|ref|XP_002629388.1| conserved hypothetical protein [Ajellomyces dermatitidis SLH14081] gi|239587173|gb|EEQ69816.1| conserved hypothetical protein [Ajellomyces dermatitidis SLH14081] Length = 250 Score = 45.4 bits (107), Expect = 0.012, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 65/176 (36%), Gaps = 22/176 (12%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 ++A L +G I PT+ Y L I+R++ K R + I + ++ Sbjct: 20 QQAYGTLKSGGVIIAPTDVGYALMTS--TQEGIQRIFASKLRQPNHN-IGIIGTYRQHRE 76 Query: 73 HASVDPLSLHLAKLFWP--GPLTLVLDLLSTTDIHPLSTA----------NLKTACFRVP 120 + + ++ G + ++ ++ +HP A T VP Sbjct: 77 LHVLPESKFEMTRVVTEDLGMIVGLIAKFNSHSLHPRLAALDKATFSQVTKGDTISIAVP 136 Query: 121 CG-FTKKLIETY-----GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 G F ++L G + SAN +GQ V+ + + + + LI+D G Sbjct: 137 EGRFLQELGRLCDEDPQGILMFGTSANLTGQGQRFRVED-IEPPVRESVDLIVDYG 191 >gi|220931235|ref|YP_002508143.1| (NiFe) hydrogenase maturation protein HypF [Halothermothrix orenii H 168] gi|219992545|gb|ACL69148.1| (NiFe) hydrogenase maturation protein HypF [Halothermothrix orenii H 168] Length = 751 Score = 45.4 bits (107), Expect = 0.012, Method: Composition-based stats. Identities = 37/189 (19%), Positives = 65/189 (34%), Gaps = 19/189 (10%) Query: 16 CEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70 + L G IAI G+ D+ I L K+RP PL ++ ++ V Sbjct: 208 IDLLKKGNIIAIK-----GIGGFHLMCDATESDVIANLRTRKRRP-DKPLALMMNKLTTV 261 Query: 71 KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130 +K+ +V + + P +VL + ++ +P L+ Sbjct: 262 RKYCNVGSMEEEILTGIR-RP--IVLLDKKGEKLPRNIAPGIRYYGVMLPYTPLHYLLFD 318 Query: 131 YG-HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE--STIVNVQCEK 187 G L S N SG + ++ ++ G +I + ++V V K Sbjct: 319 KGIEVLIATSGNVSGNPLEYQNGGVF-ENLKGIADYVL-GHNREIYVPVDDSVVRVVGGK 376 Query: 188 KVRILRPGG 196 K I R G Sbjct: 377 KRVIRRARG 385 >gi|256811018|ref|YP_003128387.1| (NiFe) hydrogenase maturation protein HypF [Methanocaldococcus fervens AG86] gi|256794218|gb|ACV24887.1| (NiFe) hydrogenase maturation protein HypF [Methanocaldococcus fervens AG86] Length = 762 Score = 45.1 bits (106), Expect = 0.013, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 51/164 (31%), Gaps = 14/164 (8%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63 A+++A + L+ G +AI G+ + L + RP P Sbjct: 201 DEAIKEAVKLLEEGKILAIK-----GIGGTHLACKVSENEPVLNLRKRLGRP-TQPFAVM 254 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123 S V A VD ++ P+ ++ + +NL T +P Sbjct: 255 -SKRDYVDLFAEVDEDERNMLLSLR-RPIVVLKKSENYDKYFSKYVSNLDTIGVMLPYSG 312 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 L+ + SAN G + + IL + + Sbjct: 313 LHYLLFDKEIAYVMTSANLPGLPMVKDNDEILK-KLDGIADYFL 355 >gi|152990714|ref|YP_001356436.1| hydrogenase maturation protein HypF [Nitratiruptor sp. SB155-2] gi|151422575|dbj|BAF70079.1| hydrogenase maturation protein HypF [Nitratiruptor sp. SB155-2] Length = 703 Score = 45.1 bits (106), Expect = 0.014, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 55/148 (37%), Gaps = 14/148 (9%) Query: 10 NALRKACEFLDAGLPIAIPTETV--YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 A+ + + G +AI + V Y L ++ +L +IK+RP P I Sbjct: 189 EAIGAVVKDILTGEIVAI--KGVGGYHLVCLPKSAY---KLRQIKRRP-KKPFALMFKSI 242 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 +K+ ++ +L P+ +V I ++ +P L Sbjct: 243 GKIKEVCHINEYEENLVTSK-ERPIVIV----KAKKIFADVAPDIDRLGVFLPYSPIYYL 297 Query: 128 I-ETYGHPLAIPSANRSGQISITNVKHI 154 + PL + SAN S + + + ++I Sbjct: 298 LFSLIDSPLVVTSANISDEPIVKDEENI 325 >gi|116751427|ref|YP_848114.1| (NiFe) hydrogenase maturation protein HypF [Syntrophobacter fumaroxidans MPOB] gi|116700491|gb|ABK19679.1| (NiFe) hydrogenase maturation protein HypF [Syntrophobacter fumaroxidans MPOB] Length = 770 Score = 45.1 bits (106), Expect = 0.014, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 53/169 (31%), Gaps = 19/169 (11%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICH 63 A+ +A L G +A V GL D+ N A+ RL K R P Sbjct: 209 EAAVAEAIRRLGEGAILA-----VKGLGGFHLAVDAGNEAAVSRLRGRKIR-EDKPFAVM 262 Query: 64 VSDISMVKKHASVDPLSLHLAKLFWP-GPLTLVLDLLST--TDIHPLSTANLKTACFRVP 120 D+ V+ + L P P+ L+ DI + + +P Sbjct: 263 FPDLETVESTCRLSDREAGLLGS--PQRPIVLLERRRDAGRGDIADSVAPHNRCLGAFLP 320 Query: 121 CGFTKKLIE--TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 L+ L + S N+S + + + + L++ Sbjct: 321 YTPLHFLLFDGAPYRALVMTSGNQSDEPIVMTNEDA-RERLRGIADLLL 368 >gi|126462906|ref|YP_001044020.1| (NiFe) hydrogenase maturation protein HypF [Rhodobacter sphaeroides ATCC 17029] gi|126104570|gb|ABN77248.1| (NiFe) hydrogenase maturation protein HypF [Rhodobacter sphaeroides ATCC 17029] Length = 758 Score = 45.1 bits (106), Expect = 0.016, Method: Composition-based stats. Identities = 36/144 (25%), Positives = 54/144 (37%), Gaps = 17/144 (11%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 + + +A L G +A V GL D+R+ A+RRL K+RP P Sbjct: 214 DPIAEAARLLARGGILA-----VKGLGGFHLACDARDKDALRRLRLRKRRP-GKPFALM- 266 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123 + M + A L + P V+ + + + T P Sbjct: 267 ATEEMAAEIADPAEADRVLLRD----PAAPVVLVRGRGRLPEEVAPGMTTLGIMRPYTPL 322 Query: 124 TKKLIETYGHPLAIPSANRSGQIS 147 +LIE +G PL + SANRSG Sbjct: 323 HHRLIEAFGGPLVMTSANRSGAPQ 346 >gi|195952426|ref|YP_002120716.1| (NiFe) hydrogenase maturation protein HypF [Hydrogenobaculum sp. Y04AAS1] gi|195932038|gb|ACG56738.1| (NiFe) hydrogenase maturation protein HypF [Hydrogenobaculum sp. Y04AAS1] Length = 736 Score = 45.1 bits (106), Expect = 0.017, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 47/152 (30%), Gaps = 16/152 (10%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59 +I N + L IA+ GL ++ + A+R L E KKR + P Sbjct: 195 NIYKENIFELMAKDLKDSKIIALK-----GLGGFHLICNALDEKAVRTLRERKKRSS-KP 248 Query: 60 LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119 + V K+ + P+ L+ + + L + + Sbjct: 249 FGIMFKSLEEVLKYLEPKEDEIKALTSV-QKPIVLI---KRKSPYFEEACKGLSSVGAFL 304 Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITN 150 G +L + P+ S N S + Sbjct: 305 AYTGIHLRLFDFIDFPIIATSGNISDTPICKD 336 >gi|729795|sp|P28156|HYPF_RHILV RecName: Full=Carbamoyltransferase hypF; AltName: Full=Carbamoyl phosphate-converting enzyme hypF; AltName: Full=[NiFe]-hydrogenase maturation factor hypF; Short=Hydrogenase maturation protein hypF gi|48734|emb|CAA37161.1| hypF [Rhizobium leguminosarum] Length = 759 Score = 44.7 bits (105), Expect = 0.019, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 54/170 (31%), Gaps = 27/170 (15%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 +++ L+ G +A+ G+ D+RN AI L ++K P V D Sbjct: 199 IKEISARLEGGAIVALK-----GVGGFHLLCDARNDGAIG-LLRLRKAGDQKPFAVMVRD 252 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126 I ++ A + + P+ LV ++ L L + Sbjct: 253 IEAARQLAR-PNEAEEALLISPARPIVLV--AARAGELSGLIAPGLTRVGLMLAYAPVHH 309 Query: 127 LIE--------TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 L+ L SAN G+ + + + + + I D Sbjct: 310 LLLDELSRSSPHCHAALVATSANPGGEPLVAD-----NDDAGRRLVAIAD 354 >gi|282856176|ref|ZP_06265459.1| (NiFe) hydrogenase maturation protein HypF [Pyramidobacter piscolens W5455] gi|282585935|gb|EFB91220.1| (NiFe) hydrogenase maturation protein HypF [Pyramidobacter piscolens W5455] Length = 753 Score = 44.3 bits (104), Expect = 0.024, Method: Composition-based stats. Identities = 33/167 (19%), Positives = 55/167 (32%), Gaps = 18/167 (10%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 D A A L G IA V GL D+ A+ L +KR P Sbjct: 202 DEKAFGLAIAALANGQIIA-----VKGLGGFHLACDATREEAVS-LLRRRKRRPRRPFAV 255 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 V ++++ +K + L ++L+ + + P L +P Sbjct: 256 MVKNVAVAEKLVKLSADDKKLLTGA--RAPIILLERNDSNLLAPSVAPGLNRLGVMLPYT 313 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169 +I L + SAN SG+ ++ + + I DG Sbjct: 314 PLHHMIMEGFDALVMTSANLSGEPLVSENEEAYR-----RLAGICDG 355 >gi|2058352|emb|CAA85443.1| HYPF [Rhizobium leguminosarum] Length = 476 Score = 44.3 bits (104), Expect = 0.026, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 53/170 (31%), Gaps = 27/170 (15%) Query: 12 LRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66 +++ L+ G +A+ G+ D+RN AI L K R P V D Sbjct: 199 IKEISARLEGGAIVALK-----GVGGFHLLCDARNDGAIGLLRLRKARDQ-KPFAVMVRD 252 Query: 67 ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126 I ++ A + + P+ LV ++ L L + Sbjct: 253 IEAARQLAR-PNEAEEALLISPARPIVLV--AARAGELSGLIAPGLTRVGLMLAYAPVHH 309 Query: 127 LIE--------TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168 L+ L SAN G+ + + + + + I D Sbjct: 310 LLLDELSRSSPHCHAALVATSANPGGEPLVAD-----NDDAGRRLVAIAD 354 >gi|329962397|ref|ZP_08300397.1| hypothetical protein HMPREF9446_01984 [Bacteroides fluxus YIT 12057] gi|328529953|gb|EGF56841.1| hypothetical protein HMPREF9446_01984 [Bacteroides fluxus YIT 12057] Length = 67 Score = 43.9 bits (103), Expect = 0.031, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 3/58 (5%) Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKKVRILRPGGL 197 + I ++ + L+IDGGI G E ST+VN + + + G Sbjct: 8 DEDEDIEYITDPELIDEKFGNAVDLVIDGGIG--GTEGSTVVNCTNGEPEIVRQGKGW 63 >gi|261403666|ref|YP_003247890.1| (NiFe) hydrogenase maturation protein HypF [Methanocaldococcus vulcanius M7] gi|261370659|gb|ACX73408.1| (NiFe) hydrogenase maturation protein HypF [Methanocaldococcus vulcanius M7] Length = 768 Score = 43.9 bits (103), Expect = 0.032, Method: Composition-based stats. Identities = 37/212 (17%), Positives = 71/212 (33%), Gaps = 37/212 (17%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKR--PAMNPLI 61 +A+++A + L+ G +AI G+ + + E++KR P Sbjct: 201 DDAVKEAVKLLEEGKILAIK-----GIGGTHLTCKVGDDETV---LELRKRLGRESQPFA 252 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLFWP-GPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 S I +KK A ++ L P P+ ++ + + +NL T +P Sbjct: 253 VM-SKIEHIKKFAELEEDEKK--ALTSPRRPIVVLNKNQNYDNYFSKYVSNLDTIGVMLP 309 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHI------LSSSI---CKEIPLIIDGGI 171 L+ + SAN G + + I ++ + I D Sbjct: 310 YSGLHYLLFDNEIAYVMTSANLPGLPMVKDNDQILKKLNNIADYFLLHNRRIVNRCDD-- 367 Query: 172 SKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203 ++V + V + R G E +K Sbjct: 368 -------SVVKKVGDNIVFLRRSRGYAPEPIK 392 >gi|150401899|ref|YP_001325665.1| (NiFe) hydrogenase maturation protein HypF [Methanococcus aeolicus Nankai-3] gi|150014602|gb|ABR57053.1| (NiFe) hydrogenase maturation protein HypF [Methanococcus aeolicus Nankai-3] Length = 795 Score = 43.9 bits (103), Expect = 0.032, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 55/158 (34%), Gaps = 15/158 (9%) Query: 7 TDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLI 61 T++NA+ + + L G AI G+ D+ N +A+ L + RP P Sbjct: 205 TNNNAIEQTVKLLKEGNIFAIK-----GIGGAHLVCDANNDSAVLELRKRLNRP-TQPFA 258 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 + +K A+ D ++L K P+ + + ++L T Sbjct: 259 IM-AKPEYLKLFANYDNEEINLFKS-QKRPIVVFDKNKNYDKYISKFVSDLNTVGAMAQY 316 Query: 122 GFTKKLIETYGHPLA--IPSANRSGQISITNVKHILSS 157 L+ +A + SAN G I+ S Sbjct: 317 SGIHHLLFNETEAIAYVMTSANLPGLPMAIENDKIIDS 354 >gi|145234176|ref|XP_001400459.1| expressed protein [Aspergillus niger CBS 513.88] gi|134057403|emb|CAK47741.1| unnamed protein product [Aspergillus niger] Length = 243 Score = 43.9 bits (103), Expect = 0.032, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 51/148 (34%), Gaps = 21/148 (14%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR--PAMNPLICHVSDISMV 70 ++ + L G +PTE YGL + + AI R + K+R + LI + Sbjct: 25 QRVFDVLQLGGIAIVPTEIGYGL--LASSVEAIERAFSAKRRRPGHAHGLI---GSYELH 79 Query: 71 KKHASVDPLSLHLAKLFWPG---PLTLVLDLLSTTDIHPLSTA-------NLKTACFRVP 120 + ++P + ++ L +V + I T T V Sbjct: 80 HELHVLEPERFEMTRVLTHDLDMGLGIVAPYKADHPILAKFTPKTLANVVKDDTIAMFVG 139 Query: 121 CG-FTKKLIE---TYGHPLAIPSANRSG 144 G +++ G + SAN SG Sbjct: 140 GGSLLREICRLNYEAGQVMVGSSANLSG 167 >gi|284052977|ref|ZP_06383187.1| (NiFe) hydrogenase maturation protein HypF [Arthrospira platensis str. Paraca] Length = 286 Score = 43.9 bits (103), Expect = 0.033, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 23/72 (31%), Gaps = 11/72 (15%) Query: 19 LDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73 + G +AI GL D+ N A+ +L K RP P I + + Sbjct: 220 IGRGQIVAIK-----GLGGFQLLVDATNAAAVEQLRIRKHRP-HKPFAVMYRSIQQISQV 273 Query: 74 ASVDPLSLHLAK 85 + + Sbjct: 274 CDMSAAEEQWLR 285 >gi|226364130|ref|YP_002781912.1| hydrogenase maturation protein HypF [Rhodococcus opacus B4] gi|226242619|dbj|BAH52967.1| hydrogenase maturation protein HypF [Rhodococcus opacus B4] Length = 768 Score = 43.9 bits (103), Expect = 0.038, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 49/160 (30%), Gaps = 21/160 (13%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62 D L + L G +A V GL D+ + A+ L K RP P Sbjct: 200 DDAVLTAVQQALRDGRIVA-----VKGLGGFHLVCDAADADAVATLRARKHRP-DKPFAV 253 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 +D+ + + L + P L+L +T + + +P Sbjct: 254 MTADLPAAAELCDISESESALLRH--PARPILLLRKRNTAPVADGIAPGIDDLGVMLPYT 311 Query: 123 FTKKLI--ETYG------HPLAIPSANRSGQISITNVKHI 154 L+ T G L + S N SG+ + Sbjct: 312 PLHHLLFTRTPGSDIDPPRVLVMTSGNLSGEPLCFDNDDA 351 >gi|39995415|ref|NP_951366.1| hydrogenase maturation protein HypF [Geobacter sulfurreducens PCA] gi|39982178|gb|AAR33639.1| hydrogenase maturation protein HypF [Geobacter sulfurreducens PCA] gi|298504415|gb|ADI83138.1| hydrogenase maturation protein HypF [Geobacter sulfurreducens KN400] Length = 763 Score = 43.5 bits (102), Expect = 0.049, Method: Composition-based stats. Identities = 34/213 (15%), Positives = 66/213 (30%), Gaps = 14/213 (6%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICHV 64 + + + E L G +AI GL D+ N A+ L K R P Sbjct: 199 DPVDQTVELLTEGKIVAIK-----GLGGYHLAVDAANDAAVAELRRRKHRDE-KPFAVMA 252 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123 D+ V + A VD + L P ++L +T + +P Sbjct: 253 RDMEAVARFALVDSVEARLLTG--PEHPIVLLRKRPSTILSGRVAPANGYIGTMLPYTPL 310 Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183 L+E L + S N S + + ++ + ++ +++ V Sbjct: 311 HHLLLEERFAALVMTSGNLSDEPISYRDDEAVERLSAIADAFLVHDREIRTRIDDSVIRV 370 Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDE 216 + + R G ++ + + V Sbjct: 371 FRGSPLFLRRSRGYVPREVRLPVEIPPVLAVGA 403 >gi|168702039|ref|ZP_02734316.1| probable low molecular weight protein-tyrosine-phosphatase ywlE [Gemmata obscuriglobus UQM 2246] Length = 343 Score = 43.1 bits (101), Expect = 0.062, Method: Composition-based stats. Identities = 45/254 (17%), Positives = 85/254 (33%), Gaps = 38/254 (14%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYE---IKKRPAMNPLI 61 ++ S +++ + L +G + +P + Y + L+ +RPA P + Sbjct: 10 TVDPSGLVQRTRDALASGGAVVLPGDGGYVV------------LWRPGTAPERPA--PAL 55 Query: 62 CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121 ++ + L WP PLT+ + + A FR P Sbjct: 56 LVFGPEEAAAAGVTIPKTARRLMARAWPAPLTVEVPAGNQVP-----GAANGFVRFRFPE 110 Query: 122 GFTKKL----IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177 L + G L + S ++T E+ L I+ G+ + G + Sbjct: 111 HPLFDLVVPALADLGPVLIADTGAESAADAVTRA--------GTEVALSINAGL-RGGPK 161 Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCVDETS-TPQSPGMLKSHYAPRSQ 235 T+V ++ PG E + R + + L C T +P + G+ K A R + Sbjct: 162 PTVVRCSDAG-YAVVEPGAFPKEEIDRLAARIVLFVCTGNTCRSPLAEGLAKKLLADRLR 220 Query: 236 VRLRAIHVNPREAL 249 + L Sbjct: 221 CATDELPARGFWVL 234 >gi|14521439|ref|NP_126915.1| hydrogenase expression/formation regulatory protein [Pyrococcus abyssi GE5] gi|5458658|emb|CAB50145.1| hypF hydrogenase expression/formation regulatory protein [Pyrococcus abyssi GE5] Length = 773 Score = 42.7 bits (100), Expect = 0.072, Method: Composition-based stats. Identities = 29/175 (16%), Positives = 52/175 (29%), Gaps = 36/175 (20%) Query: 10 NALRKACEFLDA-------------GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK--R 54 + LRKA + +D LA D+ + L K+ R Sbjct: 202 DPLRKAAKLIDKGYIIAIKGIGGIH-------------LACDATREDVVAELR--KRLFR 246 Query: 55 PAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT 114 P P D+ VK A + + P+ + L + L T Sbjct: 247 PQ-KPFAIMAKDLETVKGFAYISREEEEELTSYR-RPI-VALRKREPFPLPENLAPGLHT 303 Query: 115 ACFRVPCGFTKKLIETYGH-PL-AIPSANRSGQISITNVKHILSSSICKEIPLII 167 +P T ++ + P+ + SAN G I + + + ++ Sbjct: 304 IGVMLPYAGTHYILFHWSKTPVYVMTSANFPGMPMIKDNEEAF-EKLKDVADYLL 357 >gi|153003392|ref|YP_001377717.1| zinc finger HypF domain-containing protein [Anaeromyxobacter sp. Fw109-5] gi|152026965|gb|ABS24733.1| zinc finger HypF domain protein [Anaeromyxobacter sp. Fw109-5] Length = 189 Score = 42.0 bits (98), Expect = 0.14, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 4/76 (5%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D + A+ L K+R PL V D+ ++ A V L P + Sbjct: 75 LACDGTSSAAVVTLRARKRR-EEKPLAVMVRDLDEARRVAEVGEAEAALLTSV-ERP--I 130 Query: 95 VLDLLSTTDIHPLSTA 110 VL+ ++ + L Sbjct: 131 VLNPIARPRVPRLVRG 146 >gi|289644207|ref|ZP_06476297.1| (NiFe) hydrogenase maturation protein HypF [Frankia symbiont of Datisca glomerata] gi|289505973|gb|EFD26982.1| (NiFe) hydrogenase maturation protein HypF [Frankia symbiont of Datisca glomerata] Length = 921 Score = 41.6 bits (97), Expect = 0.15, Method: Composition-based stats. Identities = 29/186 (15%), Positives = 65/186 (34%), Gaps = 25/186 (13%) Query: 33 YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPL 92 Y LA + +P A++ L E K R V D+ + ++ A + P + + P Sbjct: 310 YHLACRADSPVAVQLLRERKAR-VGKAFAVMVRDLDVARRLAEIGPAEAAVLRG--PARP 366 Query: 93 TLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI--ETYGHPLA------IPSANRSG 144 ++L + + +P L+ + G +A + SAN + Sbjct: 367 IVLLRRRADAPVAADVAPGNPLIGLLLPYSPLHHLLFAQVPGAAVAPPACVVLTSANLAD 426 Query: 145 QISITNV-------KHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197 + + + + + + P+++ S +V V +++ I R G Sbjct: 427 EPICFDDTDARGRLPALADAMLTHDRPILLPCDDS-------VVRVVDGRELPIRRSRGH 479 Query: 198 EIETLK 203 ++ Sbjct: 480 TPLLVE 485 >gi|224373688|ref|YP_002608060.1| hypothetical protein NAMH_1680 [Nautilia profundicola AmH] gi|223589991|gb|ACM93727.1| conserved hypothetical protein [Nautilia profundicola AmH] Length = 146 Score = 41.6 bits (97), Expect = 0.16, Method: Composition-based stats. Identities = 19/143 (13%), Positives = 46/143 (32%), Gaps = 25/143 (17%) Query: 46 RRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIH 105 ++L +IK RP P++ V + +K+ V + + T + + + Sbjct: 23 KKLNKIKNRPLNQPVLREVDSLETLKRFVRVPGKYKKMLRRA--KKTTFIFPNGESYRV- 79 Query: 106 PLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPL 165 V + ++ + + SAN + + + + + Sbjct: 80 -------------VKDERHLEFLKKFKW-MYSTSANLHKK----RFDEVWARE---QADI 118 Query: 166 IIDGGISKI-GLESTIVNVQCEK 187 I++ G S+I + K Sbjct: 119 IVEDKRGLFEGEPSSIFKLSKNK 141 >gi|12045114|ref|NP_072925.1| HemK family modification methylase [Mycoplasma genitalium G37] gi|255660258|ref|ZP_05405667.1| HemK family modification methylase [Mycoplasma genitalium G37] gi|2496352|sp|Q49404|Y259_MYCGE RecName: Full=Uncharacterized protein MG259 gi|1045951|gb|AAC71479.1| modification methylase, HemK family [Mycoplasma genitalium G37] gi|166078831|gb|ABY79449.1| modification methylase, HemK family [synthetic Mycoplasma genitalium JCVI-1.0] Length = 456 Score = 41.2 bits (96), Expect = 0.21, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 60/165 (36%), Gaps = 28/165 (16%) Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62 ++ I ++ +++ L GL + T+T GL S + + + ++ K+R Sbjct: 274 VVDIKNTKTIKQ---LLKMGLAGIVNTDTQMGL--ISYSESTLDKI---KQRALNK---- 321 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 H + +++ + +A FWPG T + + S +RVP Sbjct: 322 HYVSMFGLEELKKLPKKLQQIASYFWPGSYTFIKNNKS----------------YRVPKN 365 Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 + + SAN S Q T + + S + P I Sbjct: 366 LGLLNLFNAIGRVFCTSANISNQKPYTKLSDYQNDSYWIKQPCFI 410 >gi|284044007|ref|YP_003394347.1| (NiFe) hydrogenase maturation protein HypF [Conexibacter woesei DSM 14684] gi|283948228|gb|ADB50972.1| (NiFe) hydrogenase maturation protein HypF [Conexibacter woesei DSM 14684] Length = 818 Score = 41.2 bits (96), Expect = 0.22, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 37/130 (28%), Gaps = 8/130 (6%) Query: 33 YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPL 92 Y LA + + L K+R P V+ ++ + + L P+ Sbjct: 235 YHLACRADEERVVAALRARKRR-EQRPFALMVASVAAARALVELGEAEERLL-CSRARPI 292 Query: 93 TL----VLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE--TYGHPLAIPSANRSGQI 146 L + + +P +L+ G PL + S N S + Sbjct: 293 VLAARRADGGAAGARVADAVAPGAPELGLMLPYTPLHQLLLTDAGGVPLVMTSGNVSDEP 352 Query: 147 SITNVKHILS 156 + L Sbjct: 353 IAFDDAEALR 362 >gi|87044022|gb|ABD16917.1| conserved hypothetical protein [Xylella fastidiosa] gi|87044024|gb|ABD16918.1| conserved hypothetical protein [Xylella fastidiosa] gi|87044026|gb|ABD16919.1| conserved hypothetical protein [Xylella fastidiosa] gi|87044028|gb|ABD16920.1| conserved hypothetical protein [Xylella fastidiosa] gi|87044030|gb|ABD16921.1| conserved hypothetical protein [Xylella fastidiosa] gi|87044032|gb|ABD16922.1| conserved hypothetical protein [Xylella fastidiosa] gi|87044034|gb|ABD16923.1| conserved hypothetical protein [Xylella fastidiosa] gi|87044036|gb|ABD16924.1| conserved hypothetical protein [Xylella fastidiosa] gi|87044038|gb|ABD16925.1| conserved hypothetical protein [Xylella fastidiosa] gi|87044040|gb|ABD16926.1| conserved hypothetical protein [Xylella fastidiosa] gi|87044042|gb|ABD16927.1| conserved hypothetical protein [Xylella fastidiosa] gi|87044044|gb|ABD16928.1| conserved hypothetical protein [Xylella fastidiosa] gi|87044046|gb|ABD16929.1| conserved hypothetical protein [Xylella fastidiosa] gi|87044048|gb|ABD16930.1| conserved hypothetical protein [Xylella fastidiosa] gi|87044050|gb|ABD16931.1| conserved hypothetical protein [Xylella fastidiosa] gi|87044052|gb|ABD16932.1| conserved hypothetical protein [Xylella fastidiosa] gi|87044054|gb|ABD16933.1| conserved hypothetical protein [Xylella fastidiosa] gi|87044056|gb|ABD16934.1| conserved hypothetical protein [Xylella fastidiosa] gi|87044058|gb|ABD16935.1| conserved hypothetical protein [Xylella fastidiosa] gi|87044060|gb|ABD16936.1| conserved hypothetical protein [Xylella fastidiosa] gi|87044062|gb|ABD16937.1| conserved hypothetical protein [Xylella fastidiosa] gi|87044064|gb|ABD16938.1| conserved hypothetical protein [Xylella fastidiosa] gi|87044066|gb|ABD16939.1| conserved hypothetical protein [Xylella fastidiosa] gi|87044068|gb|ABD16940.1| conserved hypothetical protein [Xylella fastidiosa] gi|87044070|gb|ABD16941.1| conserved hypothetical protein [Xylella fastidiosa] gi|87044072|gb|ABD16942.1| conserved hypothetical protein [Xylella fastidiosa] gi|87044074|gb|ABD16943.1| conserved hypothetical protein [Xylella fastidiosa] gi|87044076|gb|ABD16944.1| conserved hypothetical protein [Xylella fastidiosa] gi|87044078|gb|ABD16945.1| conserved hypothetical protein [Xylella fastidiosa] gi|87044080|gb|ABD16946.1| conserved hypothetical protein [Xylella fastidiosa] gi|87044082|gb|ABD16947.1| conserved hypothetical protein [Xylella fastidiosa] gi|87044084|gb|ABD16948.1| conserved hypothetical protein [Xylella fastidiosa] gi|87044086|gb|ABD16949.1| conserved hypothetical protein [Xylella fastidiosa] gi|87044088|gb|ABD16950.1| conserved hypothetical protein [Xylella fastidiosa] gi|87044090|gb|ABD16951.1| conserved hypothetical protein [Xylella fastidiosa] gi|87044092|gb|ABD16952.1| conserved hypothetical protein [Xylella fastidiosa] gi|87044094|gb|ABD16953.1| conserved hypothetical protein [Xylella fastidiosa] gi|87044096|gb|ABD16954.1| conserved hypothetical protein [Xylella fastidiosa] gi|87044098|gb|ABD16955.1| conserved hypothetical protein [Xylella fastidiosa] gi|87044100|gb|ABD16956.1| conserved hypothetical protein [Xylella fastidiosa] gi|87044102|gb|ABD16957.1| conserved hypothetical protein [Xylella fastidiosa] gi|87044104|gb|ABD16958.1| conserved hypothetical protein [Xylella fastidiosa] Length = 73 Score = 41.2 bits (96), Expect = 0.23, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 1/73 (1%) Query: 119 VPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178 V L + L SAN +GQ + L S+ + I+DG + + Sbjct: 2 VAHPLVSALCRAWNMALISTSANVAGQPPARR-REDLDPSLLPHLAGIVDGPTGGLAQPT 60 Query: 179 TIVNVQCEKKVRI 191 +I + + +R+ Sbjct: 61 SIRDARSGHILRL 73 >gi|238507339|ref|XP_002384871.1| conserved hypothetical protein [Aspergillus flavus NRRL3357] gi|220689584|gb|EED45935.1| conserved hypothetical protein [Aspergillus flavus NRRL3357] Length = 246 Score = 40.8 bits (95), Expect = 0.28, Method: Composition-based stats. Identities = 39/200 (19%), Positives = 66/200 (33%), Gaps = 47/200 (23%) Query: 7 TDSNALRKACEF---LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIK-KRP-AMNPLI 61 T N + A + L G +PTE YGL + + AI R + K +RP +I Sbjct: 13 TPPNVHKDALKVFQTLQEGGIAIVPTEVGYGL--IASSSEAITRAFHAKTRRPGHTQGII 70 Query: 62 --------CHV-------------SDISM----VKKHASVDPLSLHLAKLFWPGPLTLVL 96 HV D+ M + + S PL ++ TL Sbjct: 71 GNYDVHKALHVLPEEKFNITKVLTHDLDMSLGIIAPYISDHPLLQGMSAE------TLEQ 124 Query: 97 DLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILS 156 + +L R L G + SAN +G+ V+ + Sbjct: 125 TTKDGNMAIHVGGGSLLLEVVR--------LHYEVGKVVVGSSANVTGKGQKFRVQD-IE 175 Query: 157 SSICKEIPLIIDGGISKIGL 176 I + +++D G+ + + Sbjct: 176 EKILEAADIVVDYGLQRYHV 195 >gi|282162738|ref|YP_003355123.1| carbamoyltransferase HypF [Methanocella paludicola SANAE] gi|282155052|dbj|BAI60140.1| carbamoyltransferase HypF [Methanocella paludicola SANAE] Length = 747 Score = 40.4 bits (94), Expect = 0.33, Method: Composition-based stats. Identities = 26/143 (18%), Positives = 43/143 (30%), Gaps = 29/143 (20%) Query: 47 RLYEIKK---------------------RPAMNPLICHVSDISMVKKHASVDPLSLHLAK 85 R+ IK RP P + +++K+A V+ L Sbjct: 209 RILAIKGVGGFHLCCKMDVTPLLRQRRNRPE-QPFALMAP-LPVIEKYAHVNEGERGLLD 266 Query: 86 LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSG 144 P+ L L + L T F P GF L + G PL + SAN Sbjct: 267 S-MQRPIVL---LRRKHGVPESVAPGLHTVGFMTPYTGFHHLLFKDIGEPLIMTSANLPS 322 Query: 145 QISITNVKHILSSSICKEIPLII 167 + + + + + + Sbjct: 323 EPMVKDNEEAFR-RLKGIADYYL 344 >gi|89902940|ref|YP_525411.1| hypothetical protein Rfer_4192 [Rhodoferax ferrireducens T118] gi|89347677|gb|ABD71880.1| expressed protein [Rhodoferax ferrireducens T118] Length = 226 Score = 40.4 bits (94), Expect = 0.38, Method: Composition-based stats. Identities = 33/212 (15%), Positives = 76/212 (35%), Gaps = 25/212 (11%) Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72 +A + + G +P + Y A + + A++R+++ K R L + + ++ Sbjct: 11 ARAFDAMRCGGIAIVPNDVGY--AAMAHSYDALQRIFDTKGRAPTK-LNAMIGHNQLHRR 67 Query: 73 HASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDI-----HPLSTANLKTACFRV----- 119 + + PL ++ T + A+ + + Sbjct: 68 LHRCSTRGREIVAAITEDYDLPLGVIAPADFTDPFLARLDPRVIEASTRDGTLLMLLNAG 127 Query: 120 PCGFTK-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI---SKIG 175 F +L + + SAN + Q + +V + I +I+D G+ G Sbjct: 128 QFHFALSELSDAQDTAIFGSSANLTLQGTHFSV-EAIEPEIRAIADVIVDYGVLKYKPYG 186 Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAIS 207 ST+++V+ + + R G + ET+ + Sbjct: 187 CSSTLLDVES---LTVYRHG-IAYETIAWILK 214 >gi|89632586|gb|ABD77525.1| YrdC-like protein [Ictalurus punctatus] Length = 74 Score = 40.4 bits (94), Expect = 0.42, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 2/50 (4%) Query: 156 SSSICKEIPLIIDGGI--SKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203 + + +++DGG + ST+V++ + RI+R G T+ Sbjct: 11 FEELWPRLAVVVDGGPIADQSRQGSTVVDLSVPGRYRIIRSGCACSATVA 60 >gi|332753939|gb|EGJ84314.1| carbamoyltransferase hypF domain protein [Shigella flexneri K-671] Length = 326 Score = 40.0 bits (93), Expect = 0.44, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 31/90 (34%), Gaps = 11/90 (12%) Query: 35 LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94 LA D+RN A+ L E K RPA PL + A P + P+ L Sbjct: 226 LACDARNSNAVATLRERKHRPA-KPLAVML-------PVAESLPDAARQLLTTPAAPIVL 277 Query: 95 VLDLLST---TDIHPLSTANLKTACFRVPC 121 V DI P + AC P Sbjct: 278 VDKKYVPELCDDIAPGLNSRGDVACEPAPA 307 >gi|330889219|gb|EGH21880.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas syringae pv. mori str. 301020] Length = 74 Score = 40.0 bits (93), Expect = 0.49, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 2/65 (3%) Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191 G PL S G + + + + ++ LIIDGGI I ST++N+ + + Sbjct: 2 GEPLMSVSLIMPGDTVPLSDPYEMRQILEHQVDLIIDGGIGGIS-ASTVINLAGGEP-EV 59 Query: 192 LRPGG 196 +R G Sbjct: 60 VRVGC 64 >gi|152990295|ref|YP_001356017.1| hypothetical protein NIS_0546 [Nitratiruptor sp. SB155-2] gi|151422156|dbj|BAF69660.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2] Length = 150 Score = 40.0 bits (93), Expect = 0.49, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 32/99 (32%), Gaps = 17/99 (17%) Query: 47 RLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP 106 +L IK RP P + VS S++K V + T + + Sbjct: 28 KLANIKNRPPSKPFLIAVSSFSVLKYFVRVPNKYKKRVRRS--KRSTFIYPNGKALRV-- 83 Query: 107 LSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQ 145 + + + ++ +G SAN SG+ Sbjct: 84 ----------IKSTEHY--RFLKKFGW-FYSTSANESGK 109 >gi|4539152|emb|CAB39912.1| uptake hydrogenase [Rhodobacter sphaeroides] Length = 758 Score = 39.7 bits (92), Expect = 0.57, Method: Composition-based stats. Identities = 35/144 (24%), Positives = 54/144 (37%), Gaps = 17/144 (11%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64 + + +A L G +A V GL D+R+ A+R+L K+RP P Sbjct: 214 DPVAEAARLLARGGILA-----VKGLGGFHLACDARDSGALRQLRLRKRRP-GKPFALM- 266 Query: 65 SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123 + M A + L + P V+ + + + T P Sbjct: 267 ATEEMAAGIADLAQADRVLLRD----PAAPVVLVRGRGLLPEEVAPGMTTLGIMRPYTPL 322 Query: 124 TKKLIETYGHPLAIPSANRSGQIS 147 +LIE +G PL + SANRSG Sbjct: 323 HHRLIEAFGGPLVMTSANRSGAPQ 346 >gi|332749610|gb|EGJ80027.1| ribosome maturation factor [Shigella flexneri K-671] Length = 64 Score = 39.7 bits (92), Expect = 0.59, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 2/63 (3%) Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 + YG PL SAN SG V + + P ++ G S I + + Sbjct: 2 CQAYGKPLVSTSANLSGLPPCRTVDEV-RAQFGAAFP-VVPGETGGRLNPSEIRDALTGE 59 Query: 188 KVR 190 R Sbjct: 60 LFR 62 >gi|169786339|ref|XP_001827630.1| expressed protein [Aspergillus oryzae RIB40] gi|83776378|dbj|BAE66497.1| unnamed protein product [Aspergillus oryzae] Length = 246 Score = 39.3 bits (91), Expect = 0.80, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 6/53 (11%) Query: 7 TDSNALRKACEF---LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIK-KRP 55 T N + A + L G +PTE YGL + + AI R + K +RP Sbjct: 13 TPPNVHKDALKVFQTLQEGGIAIVPTEVGYGL--IASSSEAITRAFHAKTRRP 63 >gi|326402507|ref|YP_004282588.1| hydrogenase maturation protein HypF [Acidiphilium multivorum AIU301] gi|325049368|dbj|BAJ79706.1| hydrogenase maturation protein HypF [Acidiphilium multivorum AIU301] Length = 754 Score = 39.3 bits (91), Expect = 0.90, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 58/164 (35%), Gaps = 5/164 (3%) Query: 52 KKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTAN 111 K RP P D + + A P+ L+L + P Sbjct: 242 KSRP-DKPFAVLFPDDARTLDSCVAADAAARAALRGPARPI-LLLPRRPGAPLAPAIAPG 299 Query: 112 LKTACFRVPCGFTKKLI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170 T + L+ E +G PL SANRSG+ +T+ ++ + Sbjct: 300 FGTIGAMLADSPLHHLLAEGFGAPLVATSANRSGEPMLTDPDAAAAALAGIADAFLHHDR 359 Query: 171 ISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV 214 + ++ +++ + + RILR G + ++RA+ L V Sbjct: 360 PIERPVDDSVLRII-DGAPRILRAGR-GLCPIERALPFRLAEPV 401 >gi|86739783|ref|YP_480183.1| (NiFe) hydrogenase maturation protein HypF [Frankia sp. CcI3] gi|86566645|gb|ABD10454.1| (NiFe) hydrogenase maturation protein HypF [Frankia sp. CcI3] Length = 848 Score = 39.3 bits (91), Expect = 0.91, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 43/155 (27%), Gaps = 23/155 (14%) Query: 33 YGLAVDSRNP-------TAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAK 85 Y LA + N TA+ RL K RP P V D++ A + L Sbjct: 242 YHLACSAENDPGDTAGDTALARLRARKDRP-DKPFAVMVRDLATAALVADLSSAEAALLA 300 Query: 86 LFWPGPLTLVLDLLST-----TDIHPLSTANLKTACFRVPCGFTKKLIETYGHP------ 134 P+ LV + + + L +P L+ Sbjct: 301 SPA-APIVLVRRSPAAGMSGISGMSRLVAPGTPLVGLLLPYTPVHHLLFAPVPGGGPRPP 359 Query: 135 --LAIPSANRSGQISITNVKHILSSSICKEIPLII 167 L + S NRSG+ + + Sbjct: 360 RMLVMTSGNRSGEPICFADDDA-RDRLAGLADAFL 393 >gi|148259347|ref|YP_001233474.1| (NiFe) hydrogenase maturation protein HypF [Acidiphilium cryptum JF-5] gi|146401028|gb|ABQ29555.1| (NiFe) hydrogenase maturation protein HypF [Acidiphilium cryptum JF-5] Length = 754 Score = 38.9 bits (90), Expect = 0.98, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 33/99 (33%), Gaps = 3/99 (3%) Query: 52 KKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTAN 111 K RP P D + + A P+ L+L + P Sbjct: 242 KSRP-DKPFAVLFPDDARTLDSCVAADAAARAALRGPARPI-LLLPRRPGAPLAPAIAPG 299 Query: 112 LKTACFRVPCGFTKKLI-ETYGHPLAIPSANRSGQISIT 149 T + L+ E +G PL SANRSG+ +T Sbjct: 300 FGTIGAMLADSPLHHLLAEGFGAPLVATSANRSGEPMLT 338 >gi|15668895|ref|NP_247698.1| hydrogenase expression regulatory protein HypF [Methanocaldococcus jannaschii DSM 2661] gi|3024906|sp|Q58123|HYPF_METJA RecName: Full=Probable carbamoyltransferase hypF; AltName: Full=Carbamoyl phosphate-converting enzyme hypF; AltName: Full=[NiFe]-hydrogenase maturation factor hypF; Short=Hydrogenase maturation protein hypF gi|1591430|gb|AAB98708.1| hydrogenase expression regulatory protein (hypF) [Methanocaldococcus jannaschii DSM 2661] Length = 766 Score = 38.9 bits (90), Expect = 0.99, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 52/171 (30%), Gaps = 15/171 (8%) Query: 2 QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPA 56 +I++ D A+R+ + L+ G +AI G+ + L + RP Sbjct: 203 EIIAEKDE-AIRETVKLLEEGHILAIK-----GIGGTHLACKVGEDDVVLELRKRLGRP- 255 Query: 57 MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 P S I + A D + P+ ++ +NL T Sbjct: 256 TQPFAVM-SKIEYTELFAEFDEDEKNALLSLR-RPIVVLKKSQDYDKYFSKYVSNLDTIG 313 Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167 P L+ + SAN G + + IL + + Sbjct: 314 VMFPYSGLHYLLFDKEIAYVMTSANLPGLPMVKDNDEILK-KLNGIADYFL 363 >gi|149007083|ref|ZP_01830752.1| hypothetical protein CGSSp18BS74_10255 [Streptococcus pneumoniae SP18-BS74] gi|225854719|ref|YP_002736231.1| hypothetical protein SPJ_1168 [Streptococcus pneumoniae JJA] gi|225860913|ref|YP_002742422.1| hypothetical protein SPT_0974 [Streptococcus pneumoniae Taiwan19F-14] gi|298229972|ref|ZP_06963653.1| hypothetical protein SpneCMD_04802 [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254337|ref|ZP_06977923.1| hypothetical protein SpneCM_01824 [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502749|ref|YP_003724689.1| hypothetical protein HMPREF0837_11247 [Streptococcus pneumoniae TCH8431/19A] gi|307127156|ref|YP_003879187.1| hypothetical protein SP670_1022 [Streptococcus pneumoniae 670-6B] gi|147761387|gb|EDK68353.1| hypothetical protein CGSSp18BS74_10255 [Streptococcus pneumoniae SP18-BS74] gi|225723623|gb|ACO19476.1| hypothetical protein SPJ_1168 [Streptococcus pneumoniae JJA] gi|225726565|gb|ACO22416.1| hypothetical protein SPT_0974 [Streptococcus pneumoniae Taiwan19F-14] gi|298238344|gb|ADI69475.1| conserved hypothetical protein [Streptococcus pneumoniae TCH8431/19A] gi|306484218|gb|ADM91087.1| conserved hypothetical protein [Streptococcus pneumoniae 670-6B] gi|327389490|gb|EGE87835.1| hypothetical protein SPAR5_1178 [Streptococcus pneumoniae GA04375] gi|332074588|gb|EGI85062.1| hypothetical protein SPAR148_1191 [Streptococcus pneumoniae GA17545] Length = 47 Score = 38.9 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 8/48 (16%), Positives = 19/48 (39%), Gaps = 4/48 (8%) Query: 41 NPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFW 88 N + R + K+R P + + ++ A ++P + F+ Sbjct: 4 NKAGLERKFAAKERKRNKPGVVLCGSMDELRALAQLNPE----IEAFY 47 >gi|124486392|ref|YP_001031008.1| hypothetical protein Mlab_1577 [Methanocorpusculum labreanum Z] gi|124363933|gb|ABN07741.1| (NiFe) hydrogenase maturation protein HypF [Methanocorpusculum labreanum Z] Length = 742 Score = 38.9 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 37/169 (21%), Positives = 60/169 (35%), Gaps = 19/169 (11%) Query: 5 SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYE-IK---KRPAMNPL 60 +I ++ + A E LDAG +A V G+ + + + E +K RP L Sbjct: 192 NIEGADPISAAAELLDAGNIVA-----VRGVGG--FHICCVEKTAERLKQNLGRP-NQSL 243 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 + +M L K GP+ ++ L + + L +P Sbjct: 244 AVMMKPETMRDFVVEPTKEEWDLLK----GPVHPIMILDKIDPESHRALSQLHNLGVMLP 299 Query: 121 -CGFTKKLIETYGHPLAI-PSANRSGQISITNVKHILSSSICKEIPLII 167 G L PL I SAN G IT K I+ + + + I+ Sbjct: 300 YTGLHHLLFAKLKSPLLIMTSANAPGTPMITETK-IIIEKMGRVVDYIL 347 >gi|226947037|ref|YP_002802110.1| hydrogenase maturation carbamoyltransferase HypF [Azotobacter vinelandii DJ] gi|226721964|gb|ACO81135.1| hydrogenase maturation carbamoyltransferase, HypF [Azotobacter vinelandii DJ] Length = 768 Score = 38.9 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 39/175 (22%), Positives = 63/175 (36%), Gaps = 25/175 (14%) Query: 10 NALRKACEFLDAGLPIAIPTETVYG--LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 + + +A L G +A+ V G LA D+RN A+ L K+RPA P ++ Sbjct: 197 DPIERALAALARGEILAL--RGVGGFHLACDARNAGAVAELRRRKRRPA-KPFALMAANP 253 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD--IHPLSTANLKTACFRVPCGFTK 125 + ++ ++ LA+L P ++L D + +L +P Sbjct: 254 ASLQALVELNENG--LAELSGPAAPVVLLRKRPAADDLLAAGVAPDLAWLGAMLPHSPLH 311 Query: 126 KLI--ETYGHP-------------LAIPSANRSGQISITNVKHILSSSICKEIPL 165 L+ E G P L + SAN SG IT + L Sbjct: 312 WLLFHEAAGRPAGTGWAAAPQDLLLVMTSANLSGAPPITGNAEA-RERLAGIADL 365 >gi|3041688|sp|P40596|HYPF_AZOVI RecName: Full=Carbamoyltransferase hypF; AltName: Full=Carbamoyl phosphate-converting enzyme hypF; AltName: Full=[NiFe]-hydrogenase maturation factor hypF; Short=Hydrogenase maturation protein hypF Length = 776 Score = 38.9 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 39/175 (22%), Positives = 63/175 (36%), Gaps = 25/175 (14%) Query: 10 NALRKACEFLDAGLPIAIPTETVYG--LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 + + +A L G +A+ V G LA D+RN A+ L K+RPA P ++ Sbjct: 205 DPIERALAALARGEILAL--RGVGGFHLACDARNAGAVAELRRRKRRPA-KPFALMAANP 261 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD--IHPLSTANLKTACFRVPCGFTK 125 + ++ ++ LA+L P ++L D + +L +P Sbjct: 262 ASLQALVELNENG--LAELSGPAAPVVLLRKRPAADDLLAAGVAPDLAWLGAMLPHSPLH 319 Query: 126 KLI--ETYGHP-------------LAIPSANRSGQISITNVKHILSSSICKEIPL 165 L+ E G P L + SAN SG IT + L Sbjct: 320 WLLFHEAAGRPAGTGWAAAPQDLLLVMTSANLSGAPPITGNAEA-RERLAGIADL 373 >gi|303244343|ref|ZP_07330679.1| (NiFe) hydrogenase maturation protein HypF [Methanothermococcus okinawensis IH1] gi|302485238|gb|EFL48166.1| (NiFe) hydrogenase maturation protein HypF [Methanothermococcus okinawensis IH1] Length = 800 Score = 38.9 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 48/155 (30%), Gaps = 17/155 (10%) Query: 9 SNALRKACEFLDAGLPIAIPTETVYG-----LAVDSRNPTAIRRLYEIK-KRPAMNPLIC 62 + + L G IAI G LA N + L K RP P Sbjct: 209 EDVIENTVNLLKEGHIIAIK-----GVGGTHLACCCDNDEVVLNLRN-KLNRP-TQPFAI 261 Query: 63 HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122 + + + A+ D L+L K P+ ++ +NL T +P Sbjct: 262 M-TKLEYLDLFATFDDDELNLLKSS-KRPIVVLEKNKDYNKYFSKYVSNLNTIGVMLPYS 319 Query: 123 FTKKLI--ETYGHPLAIPSANRSGQISITNVKHIL 155 L+ T + SAN G K IL Sbjct: 320 ALHYLLFDNTDKIAYIMTSANLPGLPMSIKNKDIL 354 >gi|39243|emb|CAA45185.1| ORF6 [Azotobacter vinelandii] gi|398009|gb|AAA19510.1| hypF [Azotobacter vinelandii] Length = 755 Score = 38.5 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 39/175 (22%), Positives = 63/175 (36%), Gaps = 25/175 (14%) Query: 10 NALRKACEFLDAGLPIAIPTETVYG--LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 + + +A L G +A+ V G LA D+RN A+ L K+RPA P ++ Sbjct: 184 DPIERALAALARGEILAL--RGVGGFHLACDARNAGAVAELRRRKRRPA-KPFALMAANP 240 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD--IHPLSTANLKTACFRVPCGFTK 125 + ++ ++ LA+L P ++L D + +L +P Sbjct: 241 ASLQALVELNENG--LAELSGPAAPVVLLRKRPAADDLLAAGVAPDLAWLGAMLPHSPLH 298 Query: 126 KLI--ETYGHP-------------LAIPSANRSGQISITNVKHILSSSICKEIPL 165 L+ E G P L + SAN SG IT + L Sbjct: 299 WLLFHEAAGRPAGTGWAAAPQDLLLVMTSANLSGAPPITGNAEA-RERLAGIADL 352 >gi|196232004|ref|ZP_03130860.1| hypothetical protein CfE428DRAFT_4026 [Chthoniobacter flavus Ellin428] gi|196224126|gb|EDY18640.1| hypothetical protein CfE428DRAFT_4026 [Chthoniobacter flavus Ellin428] Length = 128 Score = 38.5 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 11/98 (11%) Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDE--TSTPQSPGMLKSHYAPRSQVRLRA----- 240 + R RP E+ + V + + ++PG L+SHYAPR+ +RL Sbjct: 15 EARNYRPTETELSNFFERLGVSFSAMLRGERSVGVEAPGQLESHYAPRTPLRLIKPGVEV 74 Query: 241 -IHVNPREALIRFGNVPIKNIENAIISLN---LSKTGK 274 I+ R G++ + A LS TG+ Sbjct: 75 MIYDQENHVQARLGSLAFCHPSTAAHFTYEEILSPTGR 112 >gi|118475666|ref|YP_891523.1| hypothetical protein CFF8240_0321 [Campylobacter fetus subsp. fetus 82-40] gi|261885543|ref|ZP_06009582.1| hypothetical protein CfetvA_10560 [Campylobacter fetus subsp. venerealis str. Azul-94] gi|118414892|gb|ABK83312.1| conserved hypothetical protein [Campylobacter fetus subsp. fetus 82-40] Length = 140 Score = 38.5 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 30/97 (30%), Gaps = 19/97 (19%) Query: 50 EIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLST 109 ++K RP P + VS M+K V +L + T + Sbjct: 23 KLKNRPLDQPCLICVSKFEMLKNFTRVPCKFKNLVRRA--KKTTFIYP------------ 68 Query: 110 ANLKTACFRV-PCGFTKKLIETYGHPLAIPSANRSGQ 145 T RV K ++ G SAN GQ Sbjct: 69 ---NTKAIRVIKDHPHSKFLDELGW-AYSSSANIHGQ 101 >gi|149195151|ref|ZP_01872242.1| hypothetical protein CMTB2_04512 [Caminibacter mediatlanticus TB-2] gi|149134703|gb|EDM23188.1| hypothetical protein CMTB2_04512 [Caminibacter mediatlanticus TB-2] Length = 144 Score = 38.5 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 42/139 (30%), Gaps = 25/139 (17%) Query: 46 RRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIH 105 +L +IK+R ++ V + +KK V + T + + + Sbjct: 23 EKLNKIKQRNLNKKILREVDSLYTLKKFVRVPNKFKKQVRRA--KKTTFIYSNGESFRV- 79 Query: 106 PLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPL 165 R + ++ + + SAN +G+ K + Sbjct: 80 -----------VRDKKHL--EFLKKFKW-MYSTSANLTGRY--------FDEDWAKSVAD 117 Query: 166 IIDGGISKIGLESTIVNVQ 184 II G G STI + Sbjct: 118 IIVGSDFFEGKPSTIYKLS 136 >gi|186474680|ref|YP_001863651.1| carbamoyltransferase [Burkholderia phymatum STM815] gi|184198639|gb|ACC76601.1| Carbamoyltransferase [Burkholderia phymatum STM815] Length = 572 Score = 38.5 bits (89), Expect = 1.6, Method: Composition-based stats. Identities = 31/192 (16%), Positives = 53/192 (27%), Gaps = 35/192 (18%) Query: 11 ALRKACEFLDAGLPIAI--------PTETVYGLAVD-----SRNPTAIRRLY-EIKKRPA 56 ++ + L P+ P L + +P A++ + +IK R Sbjct: 383 SIAELARILADNEPVVFLAGRAELGPR----ALGARSILAAATSP-AMKTILNDIKHREH 437 Query: 57 MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 P+ + P L +H +A L+T Sbjct: 438 FRPVAPICLEDRAPTVFCPGTPDPYMLFDHH----TRAEWQDKVPAVVHLDGSARLQTIA 493 Query: 117 FRVPCGFTKKLIE---TYGHPLAI-PSANRSGQISITNVKHILSSSICKEIPLIIDGGI- 171 + LIE G PL SAN G+ S+ + + G+ Sbjct: 494 RTSEHPVAQLLIEYEKLTGLPLLCNTSANHHGRGF---FPDAASACKWGRVEHVWCDGLL 550 Query: 172 ----SKIGLEST 179 GL S+ Sbjct: 551 LSKACGTGLPSS 562 >gi|205375650|ref|ZP_03228437.1| hypothetical protein Bcoam_22035 [Bacillus coahuilensis m4-4] Length = 47 Score = 38.1 bits (88), Expect = 1.7, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 3/45 (6%) Query: 160 CKEIPLIIDGGISKIGLESTIVNVQCEKK---VRILRPGGLEIET 201 + +++G +G+ESTIV++ + +LRPG + E Sbjct: 2 FGDTVFVLEGDGVDVGIESTIVDLSRLDQGMGPVLLRPGAITPED 46 >gi|126178367|ref|YP_001046332.1| (NiFe) hydrogenase maturation protein HypF [Methanoculleus marisnigri JR1] gi|125861161|gb|ABN56350.1| (NiFe) hydrogenase maturation protein HypF [Methanoculleus marisnigri JR1] Length = 735 Score = 37.7 bits (87), Expect = 2.4, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 61/164 (37%), Gaps = 20/164 (12%) Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAV--DSRNPTAIRRLYEIKKR--PAMNPLICHVS 65 + +R+ LDAG +AI G+ + A +K+R PL + Sbjct: 196 DPIRETAALLDAGSIVAIR-----GIGGFHIACTEEAAG---VLKRRLGRTEQPLAVM-A 246 Query: 66 DISMVKKHASVDPLSLHLAKLFWPGP