RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780760|ref|YP_003065173.1| hypothetical protein
CLIBASIA_03235 [Candidatus Liberibacter asiaticus str. psy62]
(330 letters)
>gnl|CDD|161684 TIGR00057, TIGR00057, Sua5/YciO/YrdC/YwlC family protein. partial
match to sua5, which is involved in regulation of
translation initiation. 3' end of sua5 has matches to
sua5, BS3690, and weakly to AF0781 and BB0734.
Length = 201
Score = 139 bits (353), Expect = 9e-34
Identities = 73/197 (37%), Positives = 105/197 (53%), Gaps = 5/197 (2%)
Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
+ +A + L G + PT+TVYG+ D+ + A+RRLY IK RP+ PL VSD+
Sbjct: 7 SQRGIEQAVKILRKGGIVVYPTDTVYGIGADALDEDAVRRLYRIKGRPSNKPLTVLVSDL 66
Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKK 126
S ++K+A V + L K FWPGPLTLVL T +I + KT RVP +
Sbjct: 67 SEIEKYAYVPDDAKRLMKKFWPGPLTLVLK--KTPEIPRRVSGKRKTIGIRVPDNPIALE 124
Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
L+E G P+ SAN SG+ S T+V+ + + K + LIID G G STI+++ +
Sbjct: 125 LLEELGKPIVATSANLSGKPSATDVEEAV-DELGKLVDLIIDAGPCLGGEPSTIIDLT-D 182
Query: 187 KKVRILRPGGLEIETLK 203
++LR G K
Sbjct: 183 DTPKVLREGVGSEPIEK 199
>gnl|CDD|182603 PRK10634, PRK10634, tRNA(ANN) t(6)A37 threonylcarbamoyladenosine
modification protein; Provisional.
Length = 190
Score = 62.4 bits (152), Expect = 2e-10
Identities = 47/151 (31%), Positives = 69/151 (45%), Gaps = 14/151 (9%)
Query: 3 IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
+ + +A+ A + L+ IA PTE V+G+ D + TA+ RL E+K+RP LI
Sbjct: 1 MNNNLQGDAIAAAVDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLIL 60
Query: 63 HVSDISMVKKHASVDPLSLHLAK-----LFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
++ +K + +D L A+ WPGP+T V +TT T +
Sbjct: 61 IAANYEQLKPY--IDDSMLTDAQRETIFSCWPGPVTFVFPAPATTP--RWLTGRFDSLAV 116
Query: 118 RV---PCGFTKKLIETYGHPLAIPSANRSGQ 145
RV P L + YG PL SAN SG
Sbjct: 117 RVTDHP--LVVALCQAYGKPLVSTSANLSGL 145
>gnl|CDD|183245 PRK11630, PRK11630, hypothetical protein; Provisional.
Length = 206
Score = 44.9 bits (106), Expect = 3e-05
Identities = 46/186 (24%), Positives = 78/186 (41%), Gaps = 6/186 (3%)
Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
+ +A E + G I PT++ Y L + A+ R+ I++ P + D+S +
Sbjct: 17 INQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELS 76
Query: 72 KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
++ VD ++ L K PG T +L T ++ L KT RVP L+E
Sbjct: 77 TYSFVDNVAFRLMKNNTPGNYTFILK--GTKEVPRRLLQEKRKTIGLRVPSNPIALALLE 134
Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
G P+ S G + + + K++ LII GG +G + T V +
Sbjct: 135 ALGEPMLSTSLMLPGSDFTESDPEEIKDRLEKQVDLIIHGGY--LGQQPTTVIDLTDDTP 192
Query: 190 RILRPG 195
++R G
Sbjct: 193 VVVREG 198
>gnl|CDD|184489 PRK14075, pnk, inorganic polyphosphate/ATP-NAD kinase; Provisional.
Length = 256
Score = 29.3 bits (66), Expect = 1.5
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 161 KEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194
++I LI+DG + +G + I + + VRILRP
Sbjct: 205 RDINLIVDGVL--VGKTNRITVKKSRRYVRILRP 236
>gnl|CDD|184844 PRK14835, PRK14835, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 275
Score = 28.7 bits (64), Expect = 2.0
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 14 KACEFLDAGLPIAIPTETVYGLAVD--SRNPTAIRRLYEIKKRPAMN 58
KA E L+ L + IPT T++ + D SR+P + L + +R A
Sbjct: 73 KAYEVLEWCLELGIPTVTIWVFSTDNFSRSPAEVETLMNLFEREARR 119
>gnl|CDD|163247 TIGR03396, PC_PLC, phospholipase C, phosphocholine-specific,
Pseudomonas-type. Members of this protein family are
bacterial, phosphatidylcholine-hydrolyzing phospholipase
C enzymes, with a characteristic domain architecture as
found in hemolytyic (PlcH) and nonhemolytic (PlcN)
secreted enzymes of Pseudomonas aeruginosa. PlcH
hydrolyzes phosphatidylcholine to diacylglycerol and
phosphocholine, but unlike PlcN can also hydrolyze
sphingomyelin to ceramide ((N-acylsphingosine)) and
phosphocholine. Members of this family share the
twin-arginine signal sequence for Sec-independent
transport across the plasma membrane. PlcH is secreted
as a heterodimer with a small chaperone, PlcR, encoded
immediately downstream.
Length = 690
Score = 27.7 bits (62), Expect = 3.8
Identities = 9/20 (45%), Positives = 14/20 (70%), Gaps = 2/20 (10%)
Query: 135 LAIPSANRSGQISITNVKHI 154
LAIP+ R+G I +V+H+
Sbjct: 30 LAIPANRRTGTIQ--DVEHV 47
>gnl|CDD|178879 PRK00120, PRK00120, dITP/XTP pyrophosphatase; Reviewed.
Length = 196
Score = 27.7 bits (63), Expect = 4.3
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 9/34 (26%)
Query: 260 IENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293
+ENA+I K + AA +ADDSG
Sbjct: 46 VENALI--------KARHAA-KATGLPALADDSG 70
>gnl|CDD|184835 PRK14822, PRK14822, nucleoside-triphosphatase; Provisional.
Length = 200
Score = 27.5 bits (62), Expect = 4.6
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 9/33 (27%)
Query: 261 ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293
ENAI+ K + AA N IADDSG
Sbjct: 49 ENAIL--------KAEAAA-KALNKPVIADDSG 72
>gnl|CDD|179952 PRK05170, PRK05170, hypothetical protein; Provisional.
Length = 147
Score = 27.6 bits (62), Expect = 4.7
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 11/58 (18%)
Query: 44 AIRRLYEIKKRPAMNPLIC------HVSDISM---VKKHASVDPLSLHLAKLFWPGPL 92
A R L E K P+ +PLI H + IS+ V + VD H+ + WP
Sbjct: 92 AYRLLAEGKDLPSWHPLITGSKEAVHKAGISVRGRVVSESEVDDWEDHI--VNWPLWA 147
>gnl|CDD|179400 PRK02261, PRK02261, methylaspartate mutase subunit S; Provisional.
Length = 137
Score = 26.8 bits (60), Expect = 7.0
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 9/41 (21%)
Query: 275 LKEAAFNLFN---------YMKIADDSGASSIAFSSIPNHG 306
L EA F + N ++ A ++ A +I SS+ HG
Sbjct: 27 LTEAGFEVINLGVMTSQEEFIDAAIETDADAILVSSLYGHG 67
>gnl|CDD|184553 PRK14176, PRK14176, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 287
Score = 26.7 bits (59), Expect = 8.5
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 21/63 (33%)
Query: 132 GHPLAIPSANRSGQISI---------------------TNVKHILSSSICKEIPLIIDGG 170
G P+A NR+ +S+ T VKH++ + + KE +I D G
Sbjct: 177 GKPMAAMLLNRNATVSVCHVFTDDLKKYTLDADILVVATGVKHLIKADMVKEGAVIFDVG 236
Query: 171 ISK 173
I+K
Sbjct: 237 ITK 239
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.319 0.135 0.389
Gapped
Lambda K H
0.267 0.0721 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,282,538
Number of extensions: 331815
Number of successful extensions: 586
Number of sequences better than 10.0: 1
Number of HSP's gapped: 581
Number of HSP's successfully gapped: 14
Length of query: 330
Length of database: 5,994,473
Length adjustment: 94
Effective length of query: 236
Effective length of database: 3,963,321
Effective search space: 935343756
Effective search space used: 935343756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.8 bits)