RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780760|ref|YP_003065173.1| hypothetical protein
CLIBASIA_03235 [Candidatus Liberibacter asiaticus str. psy62]
(330 letters)
>1k7j_A Protein YCIO, protein TF1; structural genomics, X-RAY
crystallography, putative translation factor, PSI,
protein structure initiative; 1.40A {Escherichia coli}
(A:)
Length = 206
Score = 146 bits (369), Expect = 4e-36
Identities = 44/197 (22%), Positives = 82/197 (41%), Gaps = 6/197 (3%)
Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
+ +A E + G I PT++ Y L + A R+ I++ P + D+
Sbjct: 13 QQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAXERICRIRQLPDGHNFTLXCRDL 72
Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126
S + ++ VD ++ L K PG T +L + L KT RVP +
Sbjct: 73 SELSTYSFVDNVAFRLXKNNTPGNYTFILK-GTKEVPRRLLQEKRKTIGXRVPSNPIAQA 131
Query: 127 LIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
L+E G P S G + ++ + I + K++ LII GG +T++++
Sbjct: 132 LLEALGEPXLSTSLXLPGSEFTESDPEEIK-DRLEKQVDLIIHGGYL-GQKPTTVIDLT- 188
Query: 186 EKKVRILRPGGLEIETL 202
+ ++R G +++
Sbjct: 189 DDTPVVVREGVGDVKPF 205
>2eqa_A Hypothetical protein ST1526; YRDC/RIBB fold, YRDC domain,
SUA5 domain, structural genomics, NPPSFA; HET: AMP;
1.80A {Sulfolobus tokodaii} (A:1-225)
Length = 225
Score = 145 bits (368), Expect = 5e-36
Identities = 75/211 (35%), Positives = 113/211 (53%), Gaps = 10/211 (4%)
Query: 2 QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
QI+ I N ++ A + + G +A PTETVYGL ++ + A ++++ K RP
Sbjct: 3 QIIKIDPLNPEIDKIKIAADVIRNGGTVAFPTETVYGLGANAFDGNACLKIFQAKNRPVD 62
Query: 58 NPLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
NPLI H++D + + + A + L +A++ WPGPLT VL T + TA L T
Sbjct: 63 NPLIVHIADFNQLFEVAKDIPDKVLEIAQIVWPGPLTFVLK--KTERVPKEVTAGLDTVA 120
Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
R P +LI G P+A PSAN + + S T + ++ + + +IIDGG + G
Sbjct: 121 VRXPAHPIALQLIRESGVPIAAPSANLATRPSPTKAEDVI-VDLNGRVDVIIDGGHTFFG 179
Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAI 206
+ESTI+NV E +LRPG IE LK+
Sbjct: 180 VESTIINVTVE-PPVLLRPGPFTIEELKKLF 209
>1hru_A YRDC gene product; protein folding, structural genomics,
RNA, SUA5, PSI, protein structure initiative, midwest
center for structural genomics; 2.00A {Escherichia coli}
(A:)
Length = 188
Score = 137 bits (345), Expect = 2e-33
Identities = 45/187 (24%), Positives = 71/187 (37%), Gaps = 8/187 (4%)
Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
+A+ A + L+ IA PTE V+G+ D + TA+ RL E+K+RP LI ++
Sbjct: 6 QRDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVXRLLELKQRPVDKGLILIAANY 65
Query: 68 SMVKKHA---SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT-ACFRVPCGF 123
+K + + + WPGP+T V + T + A
Sbjct: 66 EQLKPYIDDTXLTDVQRETIFSRWPGPVTFVFP--APATTPRWLTGRFDSLAVRVTDHPL 123
Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
L + YG PL SAN SG V + + P++ S I +
Sbjct: 124 VVALCQAYGKPLVSTSANLSGLPPCRTVDEVR-AQFGAAFPVVPGETGG-RLNPSEIRDA 181
Query: 184 QCEKKVR 190
+ R
Sbjct: 182 LTGELFR 188
>2yv4_A Hypothetical protein PH0435; alpha and beta proteins (A+B),
SUA5 domain, structural genomics, NPPSFA; 2.00A
{Pyrococcus horikoshii OT3} (A:)
Length = 105
Score = 101 bits (253), Expect = 1e-22
Identities = 18/103 (17%), Positives = 43/103 (41%), Gaps = 3/103 (2%)
Query: 220 PQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAA 279
P + ++ + + ++ + +E + G + ++ ++E A
Sbjct: 2 PNAEVIVVEGPREKVKGKITELVKELKERGKKVGVIGSESYNADE---FFFLGSSVEEVA 58
Query: 280 FNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
NLF ++ D +G + + GLG+A+ NRL +A+ +
Sbjct: 59 KNLFKALRYXDKAGVDVVIAEGVEERGLGLAVXNRLRKASGYK 101
>2eqa_A Hypothetical protein ST1526; YRDC/RIBB fold, YRDC domain,
SUA5 domain, structural genomics, NPPSFA; HET: AMP;
1.80A {Sulfolobus tokodaii} (A:226-352)
Length = 127
Score = 96.9 bits (241), Expect = 3e-21
Identities = 23/112 (20%), Positives = 38/112 (33%), Gaps = 9/112 (8%)
Query: 220 PQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVP---------IKNIENAIISLNLS 270
+PG HYAP +++ L ++ + + + + L
Sbjct: 2 ALAPGXKYKHYAPNTRLLLVENRNIFKDVVSLLSKKYKVALLIPKELSKEFEGLQQIILG 61
Query: 271 KTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
L E A NLF+ + D P G+G AI NR +A+
Sbjct: 62 SDENLYEVARNLFDSFRELDKLNVDLGIXIGFPERGIGFAIXNRARKASGFS 113
>1jcu_A Conserved protein MTH1692; mixed alpha-beta structure,
structural genomics; NMR
{Methanothermobacterthermautotrophicus}
(A:1-58,A:124-171)
Length = 106
Score = 66.5 bits (162), Expect = 4e-12
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 1 MQIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR 54
M I IT N L +A ++ G + PT+T+YGL V++ + A+RRL+ +K R
Sbjct: 1 MLIRKITRKNPSPDVLEEAISVMEGGGIVIYPTDTIYGLGVNALDEDAVRRLFRVKGR 58
>1jcu_A Conserved protein MTH1692; mixed alpha-beta structure,
structural genomics; NMR
{Methanothermobacterthermautotrophicus}
(A:59-123,A:172-208)
Length = 102
Score = 60.9 bits (148), Expect = 2e-10
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 58 NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
P+ VS + + + + ++ L + PGP T+VL+ I + T
Sbjct: 4 KPVSICVSCVDEIPRFSRPSGDAMELMERILPGPYTVVLE--RNELIPDVITGGSSRVGI 61
Query: 118 RVP 120
RVP
Sbjct: 62 RVP 64
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease,
hydrolase, tRNA processing, hydrolase,translation; 1.60A
{Escherichia coli} (A:1-201)
Length = 201
Score = 28.6 bits (63), Expect = 1.0
Identities = 20/101 (19%), Positives = 31/101 (30%), Gaps = 10/101 (9%)
Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTET---------VYGLAVDSRNPTAIRRLYEI 51
M IT +AL CE + A IA+ TE + + + A+ I
Sbjct: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60
Query: 52 KKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPL 92
+ ++ I+ S D P PL
Sbjct: 61 TDWSPLKAILRD-PSITKFLHAGSEDLEVFLNVFGELPQPL 100
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase;
bifunctional(isomerase and synthase); 2.00A {Escherichia
coli} (A:1-240)
Length = 240
Score = 27.6 bits (60), Expect = 2.3
Identities = 18/133 (13%), Positives = 40/133 (30%), Gaps = 9/133 (6%)
Query: 40 RNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLL 99
+ + + +I +P + + ++ D L L+ L L
Sbjct: 95 GSFNFLPIVSQIAPQPILCKDFIIDPYQIYLARYYQADACLLMLSVLDDDQYRQLAAVAH 154
Query: 100 STTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSI 159
S +N + + G K++ L S + N L+ +
Sbjct: 155 SLEMGVLTEVSNEEEQERAIALGA--KVVGINNRDLRDLSIDL-------NRTRELAPKL 205
Query: 160 CKEIPLIIDGGIS 172
+ +I + GI+
Sbjct: 206 GHNVTVISESGIN 218
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688)
Length = 258
Score = 26.8 bits (59), Expect = 3.6
Identities = 11/58 (18%), Positives = 17/58 (29%), Gaps = 1/58 (1%)
Query: 197 LEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGN 254
+K + ELE E S R++ R A ++GN
Sbjct: 35 TREAQIKDWVENELEALKLEAEEIPSED-QNEFLLERTREIHNEAESQLRAAQQQWGN 91
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase
class II, ligase; 3.23A {Methanococcus maripaludis S2}
(A:550-614)
Length = 65
Score = 27.0 bits (59), Expect = 3.9
Identities = 5/8 (62%), Positives = 6/8 (75%), Gaps = 1/8 (12%)
Query: 254 NVPIKNIE 261
NV +K IE
Sbjct: 1 NVEVK-IE 7
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase
class II, ligase; 3.23A {Methanococcus maripaludis S2}
(B:550-611)
Length = 62
Score = 26.6 bits (58), Expect = 5.1
Identities = 5/8 (62%), Positives = 6/8 (75%), Gaps = 1/8 (12%)
Query: 254 NVPIKNIE 261
NV +K IE
Sbjct: 1 NVEVK-IE 7
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex,
DNA replication, DNA- binding, DNA-directed DNA
polymerase, exonuclease; HET: DNA DOC DCP; 2.00A
{Saccharomyces cerevisiae} (A:244-465)
Length = 222
Score = 26.0 bits (56), Expect = 7.2
Identities = 14/62 (22%), Positives = 20/62 (32%), Gaps = 1/62 (1%)
Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
IE G P I I NV I + + S I S I + E+
Sbjct: 13 IECAGRIGVFPEPEYDPVIQIANVVSIAGAKKPFIRNVFTLNTCSPIT-GSMIFSHATEE 71
Query: 188 KV 189
++
Sbjct: 72 EM 73
>3e74_A Allantoinase; (beta/alpha)8-barrel domain, small beta-sheet
domain, hydrolase, metal-binding, purine metabolism,
zinc; HET: KCX; 2.10A {Escherichia coli}
(A:1-74,A:348-459)
Length = 186
Score = 25.6 bits (56), Expect = 8.8
Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
G + + G + S + I N IL + + G I+ IG
Sbjct: 2 GSSHHHHHSSGE-NLYFQGHMSFDLIIKNGTVILENEARVVDIAVKGGKIAAIG 54
>2hl0_A Threonyl-tRNA synthetase; translation, editing,
aminoacyl-tRNA synthetase, enzyme mechanism,
enantioselectivity, ligase; HET: A3S; 1.86A {Pyrococcus
abyssi} PDB: 2hkz_A 1y2q_A* 2hl2_A* 2hl1_A* (A:)
Length = 143
Score = 25.5 bits (56), Expect = 8.8
Identities = 9/21 (42%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
Query: 117 FRVPCGFTKKL-IETYGHPLA 136
+ P G+ K I GHPLA
Sbjct: 113 GKAPFGYYKAFKISCKGHPLA 133
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.319 0.135 0.389
Gapped
Lambda K H
0.267 0.0455 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,374,058
Number of extensions: 103219
Number of successful extensions: 249
Number of sequences better than 10.0: 1
Number of HSP's gapped: 239
Number of HSP's successfully gapped: 16
Length of query: 330
Length of database: 4,956,049
Length adjustment: 89
Effective length of query: 241
Effective length of database: 1,947,404
Effective search space: 469324364
Effective search space used: 469324364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.6 bits)