RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780760|ref|YP_003065173.1| hypothetical protein CLIBASIA_03235 [Candidatus Liberibacter asiaticus str. psy62] (330 letters) >d1jcua_ d.115.1.1 (A:) Hypothetical protein MTH1692 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 208 Score = 105 bits (261), Expect = 7e-24 Identities = 48/204 (23%), Positives = 85/204 (41%), Gaps = 10/204 (4%) Query: 1 MQIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56 M I IT N L +A ++ G + PT+T+YGL V++ + A+RRL+ +K R Sbjct: 1 MLIRKITRKNPSPDVLEEAISVMEGGGIVIYPTDTIYGLGVNALDEDAVRRLFRVKGRSP 60 Query: 57 MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116 P+ VS + + + + + + P + L I + T Sbjct: 61 HKPVSICVSCVDEIPRFSRPSG--DAMELMERILPGPYTVVLERNELIPDVITGGSSRVG 118 Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176 RVP + I P+ SAN SG+ ++ I+ + L++D G Sbjct: 119 IRVPDDEICRRIAAR-FPVTATSANISGKPPSPRLEEIV--RDLDAVDLVLDAGDCLDME 175 Query: 177 ESTIVNVQCEKKVRILRPGGLEIE 200 ST++++ R+LR G ++ Sbjct: 176 PSTVIDL-TVNPPRVLRRGKGPLD 198 >d1k7ja_ d.115.1.1 (A:) Hypothetical protein YciO {Escherichia coli [TaxId: 562]} Length = 206 Score = 101 bits (252), Expect = 9e-23 Identities = 38/193 (19%), Positives = 75/193 (38%), Gaps = 2/193 (1%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 + +A E + G I PT++ Y L + A+ R+ I++ P + D+ Sbjct: 13 QQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDL 72 Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127 S + ++ VD ++ L K PG T +L L + L Sbjct: 73 SELSTYSFVDNVAFRLMKNNTPGNYTFILKGTKEVPRRLLQEKRKTIGMRVPSNPIAQAL 132 Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187 +E G P+ S G + + + K++ LII GG +T++++ + Sbjct: 133 LEALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGGYLG-QKPTTVIDL-TDD 190 Query: 188 KVRILRPGGLEIE 200 ++R G +++ Sbjct: 191 TPVVVREGVGDVK 203 >d1hrua_ d.115.1.1 (A:) Hypothetical protein YrdC {Escherichia coli [TaxId: 562]} Length = 186 Score = 94.6 bits (234), Expect = 1e-20 Identities = 48/186 (25%), Positives = 72/186 (38%), Gaps = 6/186 (3%) Query: 8 DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67 +A+ A + L+ IA PTE V+G+ D + TA+ RL E+K+RP LI ++ Sbjct: 4 QRDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANY 63 Query: 68 SMVKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124 +K + L+ WPGP+T V T L+ A Sbjct: 64 EQLKPYIDDTMLTDVQRETIFSRWPGPVTFVFP-APATTPRWLTGRFDSLAVRVTDHPLV 122 Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184 L + YG PL SAN SG V + + P ++ G S I + Sbjct: 123 VALCQAYGKPLVSTSANLSGLPPCRTVDEVR-AQFGAAFP-VVPGETGGRLNPSEIRDAL 180 Query: 185 CEKKVR 190 + R Sbjct: 181 TGELFR 186 >d1yt3a3 c.55.3.5 (A:1-193) Ribonuclease D, catalytic domain {Escherichia coli [TaxId: 562]} Length = 193 Score = 28.4 bits (62), Expect = 0.84 Identities = 13/32 (40%), Positives = 16/32 (50%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETV 32 M IT +AL CE + A IA+ TE V Sbjct: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFV 32 >d3bnea1 a.119.1.1 (A:150-839) Lipoxigenase, C-terminal domain {Soybean (Glycine max), isozyme L1 [TaxId: 3847]} Length = 690 Score = 26.8 bits (59), Expect = 2.3 Identities = 9/41 (21%), Positives = 16/41 (39%) Query: 41 NPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81 NP IR L E + ++P I + +D ++ Sbjct: 206 NPCVIRGLEEFPPKSNLDPAIYGDQSSKITADSLDLDGYTM 246 >d1kfsa1 c.55.3.5 (A:324-518) Exonuclease domain of prokaryotic DNA polymerase {Escherichia coli [TaxId: 562]} Length = 195 Score = 25.8 bits (55), Expect = 5.4 Identities = 8/26 (30%), Positives = 10/26 (38%) Query: 6 ITDSNALRKACEFLDAGLPIAIPTET 31 I D L+ L+ A TET Sbjct: 10 ILDEETLKAWIAKLEKAPVFAFDTET 35 >d1vqot1 b.34.5.1 (T:1-119) Ribosomal proteins L24 (L24p) {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 119 Score = 25.1 bits (55), Expect = 7.9 Identities = 6/25 (24%), Positives = 11/25 (44%) Query: 62 CHVSDISMVKKHASVDPLSLHLAKL 86 HV D+++ K P L + + Sbjct: 72 IHVEDVTLEKTDGEEVPRPLDTSNV 96 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.319 0.135 0.389 Gapped Lambda K H 0.267 0.0582 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,181,771 Number of extensions: 54432 Number of successful extensions: 93 Number of sequences better than 10.0: 1 Number of HSP's gapped: 88 Number of HSP's successfully gapped: 7 Length of query: 330 Length of database: 2,407,596 Length adjustment: 86 Effective length of query: 244 Effective length of database: 1,226,816 Effective search space: 299343104 Effective search space used: 299343104 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 53 (24.5 bits)