RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780760|ref|YP_003065173.1| hypothetical protein
CLIBASIA_03235 [Candidatus Liberibacter asiaticus str. psy62]
         (330 letters)



>d1jcua_ d.115.1.1 (A:) Hypothetical protein MTH1692 {Archaeon
           Methanobacterium thermoautotrophicum [TaxId: 145262]}
          Length = 208

 Score =  105 bits (261), Expect = 7e-24
 Identities = 48/204 (23%), Positives = 85/204 (41%), Gaps = 10/204 (4%)

Query: 1   MQIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56
           M I  IT  N     L +A   ++ G  +  PT+T+YGL V++ +  A+RRL+ +K R  
Sbjct: 1   MLIRKITRKNPSPDVLEEAISVMEGGGIVIYPTDTIYGLGVNALDEDAVRRLFRVKGRSP 60

Query: 57  MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
             P+   VS +  + + +        +  +    P    + L     I  + T       
Sbjct: 61  HKPVSICVSCVDEIPRFSRPSG--DAMELMERILPGPYTVVLERNELIPDVITGGSSRVG 118

Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
            RVP     + I     P+   SAN SG+     ++ I+       + L++D G      
Sbjct: 119 IRVPDDEICRRIAAR-FPVTATSANISGKPPSPRLEEIV--RDLDAVDLVLDAGDCLDME 175

Query: 177 ESTIVNVQCEKKVRILRPGGLEIE 200
            ST++++      R+LR G   ++
Sbjct: 176 PSTVIDL-TVNPPRVLRRGKGPLD 198


>d1k7ja_ d.115.1.1 (A:) Hypothetical protein YciO {Escherichia coli
           [TaxId: 562]}
          Length = 206

 Score =  101 bits (252), Expect = 9e-23
 Identities = 38/193 (19%), Positives = 75/193 (38%), Gaps = 2/193 (1%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
               + +A E +  G  I  PT++ Y L     +  A+ R+  I++ P  +       D+
Sbjct: 13  QQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDL 72

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
           S +  ++ VD ++  L K   PG  T +L          L                 + L
Sbjct: 73  SELSTYSFVDNVAFRLMKNNTPGNYTFILKGTKEVPRRLLQEKRKTIGMRVPSNPIAQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G P+   S    G     +    +   + K++ LII GG       +T++++  + 
Sbjct: 133 LEALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGGYLG-QKPTTVIDL-TDD 190

Query: 188 KVRILRPGGLEIE 200
              ++R G  +++
Sbjct: 191 TPVVVREGVGDVK 203


>d1hrua_ d.115.1.1 (A:) Hypothetical protein YrdC {Escherichia coli
           [TaxId: 562]}
          Length = 186

 Score = 94.6 bits (234), Expect = 1e-20
 Identities = 48/186 (25%), Positives = 72/186 (38%), Gaps = 6/186 (3%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
             +A+  A + L+    IA PTE V+G+  D  + TA+ RL E+K+RP    LI   ++ 
Sbjct: 4   QRDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANY 63

Query: 68  SMVKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
             +K +     L+          WPGP+T V      T    L+      A         
Sbjct: 64  EQLKPYIDDTMLTDVQRETIFSRWPGPVTFVFP-APATTPRWLTGRFDSLAVRVTDHPLV 122

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             L + YG PL   SAN SG      V  +  +      P ++ G        S I +  
Sbjct: 123 VALCQAYGKPLVSTSANLSGLPPCRTVDEVR-AQFGAAFP-VVPGETGGRLNPSEIRDAL 180

Query: 185 CEKKVR 190
             +  R
Sbjct: 181 TGELFR 186


>d1yt3a3 c.55.3.5 (A:1-193) Ribonuclease D, catalytic domain
          {Escherichia coli [TaxId: 562]}
          Length = 193

 Score = 28.4 bits (62), Expect = 0.84
 Identities = 13/32 (40%), Positives = 16/32 (50%)

Query: 1  MQIMSITDSNALRKACEFLDAGLPIAIPTETV 32
          M    IT  +AL   CE + A   IA+ TE V
Sbjct: 1  MNYQMITTDDALASLCEAVRAFPAIALDTEFV 32


>d3bnea1 a.119.1.1 (A:150-839) Lipoxigenase, C-terminal domain
           {Soybean (Glycine max), isozyme L1 [TaxId: 3847]}
          Length = 690

 Score = 26.8 bits (59), Expect = 2.3
 Identities = 9/41 (21%), Positives = 16/41 (39%)

Query: 41  NPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81
           NP  IR L E   +  ++P I       +      +D  ++
Sbjct: 206 NPCVIRGLEEFPPKSNLDPAIYGDQSSKITADSLDLDGYTM 246


>d1kfsa1 c.55.3.5 (A:324-518) Exonuclease domain of prokaryotic
          DNA polymerase {Escherichia coli [TaxId: 562]}
          Length = 195

 Score = 25.8 bits (55), Expect = 5.4
 Identities = 8/26 (30%), Positives = 10/26 (38%)

Query: 6  ITDSNALRKACEFLDAGLPIAIPTET 31
          I D   L+     L+     A  TET
Sbjct: 10 ILDEETLKAWIAKLEKAPVFAFDTET 35


>d1vqot1 b.34.5.1 (T:1-119) Ribosomal proteins L24 (L24p)
          {Archaeon Haloarcula marismortui [TaxId: 2238]}
          Length = 119

 Score = 25.1 bits (55), Expect = 7.9
 Identities = 6/25 (24%), Positives = 11/25 (44%)

Query: 62 CHVSDISMVKKHASVDPLSLHLAKL 86
           HV D+++ K      P  L  + +
Sbjct: 72 IHVEDVTLEKTDGEEVPRPLDTSNV 96


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.135    0.389 

Gapped
Lambda     K      H
   0.267   0.0582    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,181,771
Number of extensions: 54432
Number of successful extensions: 93
Number of sequences better than 10.0: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 7
Length of query: 330
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 244
Effective length of database: 1,226,816
Effective search space: 299343104
Effective search space used: 299343104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.5 bits)