BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780760|ref|YP_003065173.1| hypothetical protein CLIBASIA_03235 [Candidatus Liberibacter asiaticus str. psy62] (330 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780760|ref|YP_003065173.1| hypothetical protein CLIBASIA_03235 [Candidatus Liberibacter asiaticus str. psy62] Length = 330 Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/330 (100%), Positives = 330/330 (100%) Query: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL Sbjct: 1 MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60 Query: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP Sbjct: 61 ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120 Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI Sbjct: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180 Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA Sbjct: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240 Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS Sbjct: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300 Query: 301 SIPNHGLGIAINNRLERAAAPRNQSQRIVP 330 SIPNHGLGIAINNRLERAAAPRNQSQRIVP Sbjct: 301 SIPNHGLGIAINNRLERAAAPRNQSQRIVP 330 >gi|254780662|ref|YP_003065075.1| NAD-glutamate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 1576 Score = 24.3 bits (51), Expect = 3.3, Method: Compositional matrix adjust. Identities = 10/33 (30%), Positives = 21/33 (63%) Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLII 167 +A+ SA R G++++ N +LSS + + L++ Sbjct: 1152 IALASAMRDGRLTLENRNKLLSSMTSEVVELVL 1184 >gi|254780855|ref|YP_003065268.1| NADH dehydrogenase subunit D [Candidatus Liberibacter asiaticus str. psy62] Length = 396 Score = 23.9 bits (50), Expect = 3.7, Method: Compositional matrix adjust. Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 4/46 (8%) Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICK----EIPL 165 T+KLIET A+P +R ++ N +H + ++ K EIP+ Sbjct: 49 TEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIEIPI 94 >gi|254780761|ref|YP_003065174.1| probable FAD-dependent oxidoreductase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 473 Score = 23.1 bits (48), Expect = 7.6, Method: Compositional matrix adjust. Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 9/47 (19%) Query: 253 GNVPIKNIENAIISL---------NLSKTGKLKEAAFNLFNYMKIAD 290 G +P KN ++ I+S+ +L +A NLFN KIA+ Sbjct: 81 GQIPRKNRKDIILSIKRMNRIRDIDLRSNTIAVDAGINLFNVQKIAE 127 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.319 0.135 0.389 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 198,080 Number of Sequences: 1233 Number of extensions: 7833 Number of successful extensions: 18 Number of sequences better than 100.0: 5 Number of HSP's better than 100.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 15 Number of HSP's gapped (non-prelim): 5 length of query: 330 length of database: 328,796 effective HSP length: 74 effective length of query: 256 effective length of database: 237,554 effective search space: 60813824 effective search space used: 60813824 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 38 (19.2 bits)