HHsearch alignment for GI: 254780761 and conserved domain: TIGR02963
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit; InterPro: IPR014307 Members of this protein are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalisation among xanthine dehydrogenases in eukaryotes. ; GO: 0004854 xanthine dehydrogenase activity, 0004855 xanthine oxidase activity, 0050660 FAD binding.
Probab=97.31 E-value=0.00027 Score=46.28 Aligned_cols=131 Identities=15% Similarity=0.246 Sum_probs=80.6
Q ss_pred CCCCCCCEE--EECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCC-CCEEEEECCCCCCCCCCCCCCCEEEEC
Q ss_conf 676687589--95499899999999998729829997588777654010488-866999763002774211237345511
Q gi|254780761|r 38 IYHGTSPLV--LLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKN-RKDIILSIKRMNRIRDIDLRSNTIAVD 114 (473)
Q Consensus 38 ~~~~~p~~V--v~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~-~~~vvld~~~mn~il~id~~~~~v~ve 114 (473)
T Consensus 219 ~l~~~~~~~~W~~P~t~~dLA~l~~a--~P~ArivA--GsTDVG-LWVTk~~R~L~~~i~~g~v~EL~~i~~~~~~i~iG 293 (515)
T TIGR02963 219 ELNSGGERFTWIAPTTLDDLAALKAA--HPKARIVA--GSTDVG-LWVTKQMRDLPDVIYVGQVAELKRIEETDDGIEIG 293 (515)
T ss_pred EEECCCCCEEEEECCCHHHHHHHHHH--CCCCEEEE--CCEEHH-HHHHHHHHHHHCCCCCCCCHHHCEEEECCCEEEEE
T ss_conf 98417861588706888999999972--89958996--460046-68856421121110256843211013348726982
Q ss_pred CCCCHHHHHHHCCCCCCCCC----------C------CCCCCCCCCCHHHHHCCCCCCHHHHCCCCCCC-----CCCCCC
Q ss_conf 44200222210012322234----------4------33432111311222123564000112573334-----443323
Q gi|254780761|r 115 AGINLFNVQKIAEKNHRLFP----------L------SLPSEKYCHIGGNLATNAGGTAVLSYGNIRHL-----CLGIEA 173 (473)
Q Consensus 115 aGv~~~~l~~~l~~~g~~~p----------~------~p~s~~~aTvGG~ia~~~~G~~s~~yG~~~d~-----v~~~~v 173 (473)
T Consensus 294 A~v~l~~a~~~L~~~~P~l~~~T~~Fq~~~el~~RfAs~QiRN~GTlGGNIANGS---------PIGD~pP~LIALGA~l 364 (515)
T TIGR02963 294 AGVTLTDAYAALAERYPELGAKTRLFQAALELLRRFASLQIRNAGTLGGNIANGS---------PIGDSPPALIALGATL 364 (515)
T ss_pred CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC---------CCCCCCHHHHHCCCEE
T ss_conf 4888889999998724220134788999999999868897320110136422668---------7666783787139879
Q ss_pred CCCCCCCEE
Q ss_conf 466653021
Q gi|254780761|r 174 VLPTGDIWN 182 (473)
Q Consensus 174 v~~~G~i~~ 182 (473)
T Consensus 365 ~LR~G~~~R 373 (515)
T TIGR02963 365 TLRKGETRR 373 (515)
T ss_pred EEECCCCCC
T ss_conf 997077523