HHsearch alignment for GI: 254780761 and conserved domain: TIGR02963

>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit; InterPro: IPR014307 Members of this protein are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalisation among xanthine dehydrogenases in eukaryotes. ; GO: 0004854 xanthine dehydrogenase activity, 0004855 xanthine oxidase activity, 0050660 FAD binding.
Probab=97.31  E-value=0.00027  Score=46.28  Aligned_cols=131  Identities=15%  Similarity=0.246  Sum_probs=80.6

Q ss_pred             CCCCCCCEE--EECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCC-CCEEEEECCCCCCCCCCCCCCCEEEEC
Q ss_conf             676687589--95499899999999998729829997588777654010488-866999763002774211237345511
Q gi|254780761|r   38 IYHGTSPLV--LLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKN-RKDIILSIKRMNRIRDIDLRSNTIAVD  114 (473)
Q Consensus        38 ~~~~~p~~V--v~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~-~~~vvld~~~mn~il~id~~~~~v~ve  114 (473)
T Consensus       219 ~l~~~~~~~~W~~P~t~~dLA~l~~a--~P~ArivA--GsTDVG-LWVTk~~R~L~~~i~~g~v~EL~~i~~~~~~i~iG  293 (515)
T TIGR02963       219 ELNSGGERFTWIAPTTLDDLAALKAA--HPKARIVA--GSTDVG-LWVTKQMRDLPDVIYVGQVAELKRIEETDDGIEIG  293 (515)
T ss_pred             EEECCCCCEEEEECCCHHHHHHHHHH--CCCCEEEE--CCEEHH-HHHHHHHHHHHCCCCCCCCHHHCEEEECCCEEEEE
T ss_conf             98417861588706888999999972--89958996--460046-68856421121110256843211013348726982


Q ss_pred             CCCCHHHHHHHCCCCCCCCC----------C------CCCCCCCCCCHHHHHCCCCCCHHHHCCCCCCC-----CCCCCC
Q ss_conf             44200222210012322234----------4------33432111311222123564000112573334-----443323
Q gi|254780761|r  115 AGINLFNVQKIAEKNHRLFP----------L------SLPSEKYCHIGGNLATNAGGTAVLSYGNIRHL-----CLGIEA  173 (473)
Q Consensus       115 aGv~~~~l~~~l~~~g~~~p----------~------~p~s~~~aTvGG~ia~~~~G~~s~~yG~~~d~-----v~~~~v  173 (473)
T Consensus       294 A~v~l~~a~~~L~~~~P~l~~~T~~Fq~~~el~~RfAs~QiRN~GTlGGNIANGS---------PIGD~pP~LIALGA~l  364 (515)
T TIGR02963       294 AGVTLTDAYAALAERYPELGAKTRLFQAALELLRRFASLQIRNAGTLGGNIANGS---------PIGDSPPALIALGATL  364 (515)
T ss_pred             CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC---------CCCCCCHHHHHCCCEE
T ss_conf             4888889999998724220134788999999999868897320110136422668---------7666783787139879


Q ss_pred             CCCCCCCEE
Q ss_conf             466653021
Q gi|254780761|r  174 VLPTGDIWN  182 (473)
Q Consensus       174 v~~~G~i~~  182 (473)
T Consensus       365 ~LR~G~~~R  373 (515)
T TIGR02963       365 TLRKGETRR  373 (515)
T ss_pred             EEECCCCCC
T ss_conf             997077523