Query gi|254780761|ref|YP_003065174.1| probable FAD-dependent oxidoreductase protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 473
No_of_seqs 138 out of 5990
Neff 9.1
Searched_HMMs 39220
Date Sun May 29 21:53:12 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780761.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11230 glycolate oxidase sub 100.0 0 0 809.1 35.4 458 1-473 13-472 (499)
2 TIGR00387 glcD glycolate oxida 100.0 0 0 735.0 18.5 418 46-471 1-437 (437)
3 KOG1232 consensus 100.0 0 0 624.1 21.3 463 2-473 49-511 (511)
4 COG0277 GlcD FAD/FMN-containin 100.0 0 0 581.3 33.2 451 12-473 2-456 (459)
5 PRK11282 glcE glycolate oxidas 100.0 0 0 508.1 18.8 345 50-473 2-348 (351)
6 KOG1233 consensus 100.0 0 0 497.9 25.9 451 5-473 116-613 (613)
7 KOG1231 consensus 100.0 0 0 443.5 17.5 446 10-473 28-497 (505)
8 pfam02913 FAD-oxidase_C FAD li 100.0 0 0 308.0 20.9 243 220-472 1-247 (247)
9 PRK11183 D-lactate dehydrogena 100.0 8.9E-36 2.3E-40 244.0 21.4 434 5-471 3-552 (565)
10 pfam01565 FAD_binding_4 FAD bi 100.0 1.1E-34 2.7E-39 237.2 9.0 137 43-183 1-137 (138)
11 TIGR01677 pln_FAD_oxido plant- 100.0 1.9E-29 4.7E-34 204.3 20.7 405 40-468 36-520 (577)
12 TIGR01679 bact_FAD_ox FAD-link 99.9 3.7E-25 9.3E-30 177.3 15.6 394 34-470 3-420 (426)
13 KOG4730 consensus 99.9 1E-25 2.6E-30 180.9 12.4 182 43-236 50-231 (518)
14 TIGR01678 FAD_lactone_ox sugar 99.9 1.6E-24 4.2E-29 173.2 8.6 196 34-242 6-205 (505)
15 PRK13906 murB UDP-N-acetylenol 99.8 3.2E-18 8E-23 133.8 11.9 196 4-221 2-198 (307)
16 KOG1262 consensus 99.7 3.4E-18 8.8E-23 133.6 3.8 146 92-242 105-250 (543)
17 PRK12436 UDP-N-acetylenolpyruv 99.7 8.7E-16 2.2E-20 118.5 11.5 193 6-220 4-197 (305)
18 PRK13905 murB UDP-N-acetylenol 99.6 1E-14 2.5E-19 111.8 10.2 174 27-221 18-193 (298)
19 COG0812 MurB UDP-N-acetylmuram 99.6 2.8E-14 7.1E-19 109.0 12.4 174 28-220 9-183 (291)
20 PRK13903 murB UDP-N-acetylenol 99.6 3.4E-14 8.6E-19 108.5 10.6 187 13-221 7-195 (359)
21 TIGR01676 GLDHase galactonolac 99.5 2.6E-15 6.6E-20 115.5 2.4 179 34-224 53-232 (541)
22 PRK00046 murB UDP-N-acetylenol 99.5 1.5E-13 3.8E-18 104.4 10.4 170 39-222 17-190 (348)
23 PRK13904 murB UDP-N-acetylenol 98.6 2.3E-07 5.9E-12 65.6 7.0 135 59-220 24-159 (257)
24 pfam09330 Lact-deh-memb D-lact 98.4 4.3E-07 1.1E-11 63.9 5.5 185 260-471 86-282 (291)
25 TIGR03195 4hydrxCoA_B 4-hydrox 97.8 2.5E-05 6.4E-10 52.8 4.0 106 42-152 3-117 (321)
26 pfam04030 ALO D-arabinono-1,4- 97.8 0.00096 2.4E-08 42.9 11.8 115 343-469 121-253 (258)
27 PRK09971 xanthine dehydrogenas 97.7 3.6E-05 9.1E-10 51.8 4.2 148 46-219 7-175 (292)
28 PRK09799 putative selenate red 97.7 3.8E-05 9.8E-10 51.6 4.1 141 46-216 5-155 (258)
29 TIGR03312 Se_sel_red_FAD proba 97.7 3.5E-05 8.8E-10 51.9 3.6 141 46-216 4-154 (257)
30 pfam00941 FAD_binding_5 FAD bi 97.5 0.00019 4.8E-09 47.3 4.8 105 44-153 3-116 (171)
31 TIGR02963 xanthine_xdhA xanthi 97.3 0.00027 7E-09 46.3 4.0 131 38-182 219-373 (515)
32 TIGR03199 pucC xanthine dehydr 97.1 0.00056 1.4E-08 44.3 3.6 101 49-153 1-110 (264)
33 TIGR00179 murB UDP-N-acetyleno 96.9 0.0024 6.2E-08 40.3 5.3 135 39-183 9-146 (327)
34 pfam09265 Cytokin-bind Cytokin 96.2 0.1 2.7E-06 30.1 12.3 116 350-471 143-277 (280)
35 COG4630 XdhA Xanthine dehydrog 95.3 0.023 5.8E-07 34.2 3.8 130 39-179 199-337 (493)
36 COG1319 CoxM Aerobic-type carb 95.3 0.042 1.1E-06 32.6 5.2 107 43-153 3-118 (284)
37 pfam08031 BBE Berberine and be 92.4 0.12 3E-06 29.7 2.8 28 440-468 12-39 (45)
38 TIGR01628 PABP-1234 polyadenyl 86.6 0.68 1.7E-05 25.0 3.0 55 188-246 190-244 (860)
39 COG1920 Predicted nucleotidylt 84.7 1.6 4.2E-05 22.6 4.2 11 432-442 183-193 (210)
40 TIGR01182 eda 2-dehydro-3-deox 82.6 1.6 4E-05 22.7 3.4 74 44-137 11-88 (205)
41 COG4981 Enoyl reductase domain 78.5 3.7 9.5E-05 20.3 4.2 77 40-126 149-232 (717)
42 pfam00076 RRM_1 RNA recognitio 77.7 1.3 3.3E-05 23.2 1.6 56 186-245 5-60 (70)
43 COG4792 EscU Type III secretor 77.6 5.2 0.00013 19.4 5.9 16 167-182 108-123 (349)
44 cd06564 GH20_DspB_LnbB-like Gl 77.3 2.7 6.8E-05 21.2 3.2 23 50-72 79-101 (326)
45 cd06562 GH20_HexA_HexB-like Be 77.0 2.7 6.8E-05 21.2 3.1 23 50-72 67-89 (348)
46 cd06569 GH20_Sm-chitobiase-lik 76.9 2.7 6.9E-05 21.2 3.1 23 50-72 94-116 (445)
47 cd06568 GH20_SpHex_like A subg 76.5 2.9 7.3E-05 21.0 3.2 22 51-72 73-94 (329)
48 pfam00728 Glyco_hydro_20 Glyco 74.8 3.4 8.7E-05 20.6 3.2 23 50-72 67-89 (335)
49 cd06565 GH20_GcnA-like Glycosy 74.8 3.3 8.5E-05 20.6 3.1 63 5-72 15-79 (301)
50 cd06570 GH20_chitobiase-like_1 74.8 3.4 8.6E-05 20.6 3.1 22 51-72 66-87 (311)
51 cd06563 GH20_chitobiase-like T 74.6 3.5 8.8E-05 20.5 3.2 22 51-72 84-105 (357)
52 PRK07114 keto-hydroxyglutarate 74.2 5 0.00013 19.5 3.9 79 44-138 19-100 (223)
53 KOG0125 consensus 73.8 2.5 6.4E-05 21.4 2.3 48 192-244 109-156 (376)
54 TIGR02392 rpoH_proteo alternat 73.2 2.7 6.9E-05 21.2 2.4 10 452-461 268-277 (279)
55 cd02742 GH20_hexosaminidase Be 73.0 4 0.0001 20.1 3.2 23 50-72 69-91 (303)
56 KOG0122 consensus 71.9 3.7 9.3E-05 20.4 2.8 56 186-245 196-252 (270)
57 COG0800 Eda 2-keto-3-deoxy-6-p 71.2 3.6 9.3E-05 20.4 2.6 75 44-137 16-92 (211)
58 PRK07455 keto-hydroxyglutarate 69.7 8 0.0002 18.2 4.4 76 43-138 15-93 (210)
59 KOG0144 consensus 69.6 3.2 8.1E-05 20.7 2.0 52 188-243 133-184 (510)
60 cd04795 SIS SIS domain. SIS (S 68.7 8.4 0.00022 18.1 6.0 67 4-72 12-80 (87)
61 TIGR00328 flhB flagellar biosy 67.4 9 0.00023 17.9 4.5 12 431-442 305-316 (352)
62 PRK03604 moaC bifunctional mol 66.9 9.2 0.00023 17.9 5.1 19 407-425 279-297 (301)
63 KOG0430 consensus 66.6 9.3 0.00024 17.8 4.7 119 46-176 217-350 (1257)
64 TIGR01859 fruc_bis_ald_ fructo 66.2 1.7 4.4E-05 22.4 0.1 16 456-471 303-318 (339)
65 PRK09140 2-dehydro-3-deoxy-6-p 66.0 9.5 0.00024 17.8 4.4 79 40-138 8-91 (206)
66 smart00362 RRM_2 RNA recogniti 63.9 4.4 0.00011 19.8 1.8 55 186-245 6-60 (72)
67 smart00360 RRM RNA recognition 63.6 5.8 0.00015 19.1 2.4 55 187-245 4-59 (71)
68 PRK08904 consensus 62.4 10 0.00027 17.5 3.5 75 44-138 13-90 (207)
69 cd00590 RRM RRM (RNA recogniti 62.4 6.7 0.00017 18.7 2.5 57 186-246 6-62 (74)
70 TIGR02667 moaB_proteo molybden 61.1 6.7 0.00017 18.7 2.4 41 41-81 37-78 (163)
71 TIGR02707 butyr_kinase butyrat 59.9 9.5 0.00024 17.8 3.0 35 352-387 215-252 (353)
72 TIGR00649 MG423 conserved hypo 58.9 4.4 0.00011 19.9 1.1 139 42-225 72-220 (593)
73 TIGR03157 cas_Csc2 CRISPR-asso 56.7 6.5 0.00017 18.8 1.7 12 447-458 270-281 (282)
74 pfam01081 Aldolase KDPG and KH 55.0 15 0.00038 16.5 3.8 77 43-138 10-88 (196)
75 PRK06552 keto-hydroxyglutarate 55.0 15 0.00038 16.5 4.7 76 43-138 15-96 (209)
76 PRK00448 polC DNA polymerase I 54.8 4.8 0.00012 19.6 0.7 21 55-75 867-887 (1436)
77 PRK09532 DNA polymerase III su 53.7 7.6 0.00019 18.4 1.6 14 58-71 190-203 (874)
78 TIGR01235 pyruv_carbox pyruvat 53.6 16 0.0004 16.4 3.4 32 41-72 131-162 (1169)
79 TIGR01824 PabB-clade2 para-ami 52.2 4.8 0.00012 19.6 0.4 38 354-395 290-329 (373)
80 TIGR02634 xylF D-xylose ABC tr 51.0 17 0.00044 16.1 4.9 68 6-73 17-86 (307)
81 cd02016 TPP_E1_OGDC_like Thiam 50.2 14 0.00035 16.8 2.5 15 212-226 103-117 (265)
82 COG1377 FlhB Flagellar biosynt 50.1 18 0.00045 16.1 4.8 13 233-245 139-151 (363)
83 PRK08104 consensus 49.4 18 0.00046 16.0 5.1 76 43-138 17-95 (212)
84 PRK06015 keto-hydroxyglutarate 49.2 18 0.00047 16.0 5.0 76 44-138 18-95 (212)
85 COG1570 XseA Exonuclease VII, 48.7 15 0.00039 16.4 2.6 21 450-470 376-396 (440)
86 pfam02601 Exonuc_VII_L Exonucl 47.7 17 0.00043 16.2 2.6 19 452-470 240-258 (295)
87 PRK10355 xylF D-xylose transpo 47.5 20 0.0005 15.8 4.7 38 37-74 77-114 (330)
88 COG0019 LysA Diaminopimelate d 47.4 19 0.00049 15.9 2.9 60 9-71 18-80 (394)
89 PRK06658 consensus 47.3 8.6 0.00022 18.0 1.1 21 55-75 344-365 (1145)
90 PTZ00182 3-methyl-2-oxobutanat 46.8 20 0.00051 15.7 3.5 30 53-83 39-68 (355)
91 PRK07135 dnaE DNA polymerase I 46.5 9 0.00023 17.9 1.1 21 55-75 274-295 (987)
92 TIGR00416 sms DNA repair prote 46.5 20 0.00051 15.7 5.3 31 46-76 214-248 (481)
93 PRK00286 xseA exodeoxyribonucl 45.9 19 0.00048 15.9 2.6 21 450-470 379-399 (443)
94 KOG2499 consensus 45.8 21 0.00053 15.6 2.9 30 196-225 155-185 (542)
95 PRK11892 pyruvate dehydrogenas 45.2 21 0.00054 15.6 3.7 13 448-460 449-461 (464)
96 COG0022 AcoB Pyruvate/2-oxoglu 44.8 21 0.00055 15.5 3.1 32 52-83 5-36 (324)
97 TIGR01369 CPSaseII_lrg carbamo 44.3 19 0.00049 15.8 2.5 48 23-74 123-170 (1089)
98 COG4566 TtrR Response regulato 44.2 22 0.00056 15.5 5.5 20 115-134 59-78 (202)
99 PRK08957 consensus 44.1 9.7 0.00025 17.7 0.9 21 55-75 344-365 (1159)
100 PRK09404 kgd alpha-ketoglutara 44.0 22 0.00056 15.5 3.4 46 21-67 391-438 (931)
101 PRK07012 consensus 43.8 13 0.00032 17.0 1.5 21 55-75 346-367 (1173)
102 PRK08156 surface presentation 43.6 22 0.00057 15.4 5.1 11 169-179 104-114 (367)
103 KOG0258 consensus 43.5 22 0.00057 15.4 4.4 38 97-135 128-168 (475)
104 PRK08296 hypothetical protein; 43.4 11 0.00028 17.4 1.1 21 410-430 540-560 (602)
105 COG2873 MET17 O-acetylhomoseri 42.8 23 0.00059 15.4 3.9 20 347-366 342-361 (426)
106 pfam03471 CorC_HlyC Transporte 42.3 17 0.00043 16.2 1.9 40 107-153 4-43 (80)
107 PRK07374 dnaE DNA polymerase I 42.2 13 0.00033 16.9 1.3 21 55-75 352-373 (1171)
108 pfam07733 DNA_pol3_alpha Bacte 41.3 11 0.00029 17.3 0.9 21 55-75 44-65 (381)
109 pfam07317 YcgR YcgR protein. T 41.2 24 0.00062 15.2 5.8 67 50-134 5-71 (108)
110 pfam00920 ILVD_EDD Dehydratase 40.2 11 0.00028 17.3 0.7 39 43-81 81-119 (521)
111 pfam05889 SLA_LP_auto_ag Solub 40.1 22 0.00055 15.5 2.2 10 202-211 152-161 (389)
112 PRK06857 consensus 39.9 26 0.00065 15.1 3.6 78 43-138 14-92 (209)
113 PRK09074 consensus 39.4 13 0.00033 16.9 1.0 21 55-75 353-374 (1149)
114 pfam01312 Bac_export_2 FlhB Hr 39.2 26 0.00067 15.0 5.3 15 411-425 290-304 (343)
115 PRK08744 consensus 39.1 15 0.00037 16.6 1.2 21 55-75 354-375 (1195)
116 PRK12772 bifunctional flagella 38.8 26 0.00068 15.0 5.2 15 411-425 551-565 (609)
117 cd00452 KDPG_aldolase KDPG and 38.6 27 0.00068 14.9 4.9 76 44-138 7-84 (190)
118 TIGR02237 recomb_radB DNA repa 38.0 27 0.00069 14.9 4.4 16 207-226 11-26 (223)
119 PRK06637 consensus 38.0 16 0.00042 16.3 1.3 21 55-75 344-365 (1182)
120 cd06839 PLPDE_III_Btrk_like Ty 37.7 28 0.0007 14.9 6.0 19 46-67 37-55 (382)
121 PRK06348 aspartate aminotransf 37.6 28 0.00071 14.8 3.5 26 38-67 34-59 (383)
122 KOG0105 consensus 37.4 19 0.00048 15.9 1.5 50 187-242 14-63 (241)
123 PRK08782 consensus 37.3 28 0.00071 14.8 3.6 76 44-138 20-97 (219)
124 PRK09732 hypothetical protein; 37.3 18 0.00046 16.0 1.4 65 55-131 16-84 (134)
125 PRK07892 consensus 36.7 16 0.0004 16.4 1.0 21 55-75 361-382 (1180)
126 TIGR01828 pyru_phos_dikin pyru 36.6 26 0.00065 15.1 2.1 43 69-116 469-511 (920)
127 PRK08512 consensus 36.6 17 0.00045 16.1 1.3 21 55-75 369-390 (1185)
128 PRK09108 type III secretion sy 36.4 29 0.00074 14.7 2.9 23 403-425 283-305 (354)
129 PRK05898 dnaE DNA polymerase I 36.0 16 0.0004 16.4 1.0 21 55-75 277-298 (971)
130 PRK13452 atpC F0F1 ATP synthas 35.9 20 0.0005 15.8 1.4 37 166-212 3-39 (145)
131 TIGR01169 rplA_bact ribosomal 35.8 26 0.00065 15.1 2.0 14 233-246 20-33 (227)
132 PRK06920 dnaE DNA polymerase I 35.2 19 0.00048 15.9 1.2 21 55-75 326-347 (1107)
133 PRK05718 keto-hydroxyglutarate 34.6 31 0.00079 14.6 4.0 77 43-138 17-95 (212)
134 cd06315 PBP1_ABC_sugar_binding 34.3 31 0.0008 14.5 4.7 66 9-74 22-89 (280)
135 cd01539 PBP1_GGBP Periplasmic 34.3 31 0.0008 14.5 4.5 36 38-73 54-89 (303)
136 KOG3159 consensus 34.0 32 0.0008 14.5 3.6 47 41-100 47-94 (336)
137 PRK06326 consensus 34.0 21 0.00054 15.6 1.4 21 55-75 394-415 (1240)
138 PRK07084 fructose-bisphosphate 33.9 13 0.00034 16.8 0.3 31 43-73 25-55 (321)
139 TIGR01649 hnRNP-L_PTB hnRNP-L/ 33.7 27 0.0007 14.9 1.9 98 74-178 206-316 (557)
140 cd06300 PBP1_ABC_sugar_binding 33.6 32 0.00082 14.4 5.2 37 38-74 57-93 (272)
141 KOG0114 consensus 33.5 32 0.00082 14.4 2.3 55 185-245 24-78 (124)
142 KOG3447 consensus 33.5 24 0.0006 15.3 1.5 79 98-182 14-93 (150)
143 TIGR00500 met_pdase_I methioni 32.9 30 0.00076 14.7 2.0 17 110-126 27-43 (265)
144 pfam04486 SchA_CurD SchA/CurD 32.4 22 0.00056 15.5 1.2 71 45-129 8-82 (114)
145 cd06311 PBP1_ABC_sugar_binding 32.4 34 0.00086 14.3 4.7 37 38-74 57-93 (274)
146 COG0587 DnaE DNA polymerase II 31.9 22 0.00056 15.5 1.2 21 55-75 343-364 (1139)
147 TIGR01132 pgm phosphoglucomuta 31.8 22 0.00056 15.5 1.2 12 126-137 228-239 (553)
148 KOG1123 consensus 31.6 35 0.00088 14.2 2.3 59 40-98 296-356 (776)
149 PRK06298 type III secretion sy 31.4 35 0.00089 14.2 5.3 15 411-425 289-303 (360)
150 TIGR01107 Na_K_ATPase_bet Na+/ 31.2 26 0.00067 15.0 1.5 11 298-308 156-166 (317)
151 PRK07279 dnaE DNA polymerase I 31.1 25 0.00063 15.2 1.3 21 55-75 283-304 (1033)
152 COG2144 Selenophosphate synthe 30.8 36 0.00091 14.2 3.2 30 360-391 268-298 (324)
153 PRK06826 dnaE DNA polymerase I 30.4 22 0.00057 15.4 1.0 21 55-75 342-363 (1157)
154 pfam07476 MAAL_C Methylasparta 30.4 36 0.00092 14.1 4.8 22 295-316 123-144 (249)
155 COG1693 Repressor of nif and g 30.1 32 0.00082 14.4 1.7 30 43-72 111-140 (325)
156 cd01540 PBP1_arabinose_binding 30.1 37 0.00093 14.1 3.4 59 14-72 26-85 (289)
157 PRK09212 pyruvate dehydrogenas 29.9 37 0.00094 14.1 3.8 16 1-16 1-18 (327)
158 TIGR03531 selenium_SpcS O-phos 29.9 37 0.00094 14.1 2.2 12 201-212 201-212 (444)
159 PRK05702 flhB flagellar biosyn 29.8 37 0.00094 14.1 5.2 15 411-425 295-309 (352)
160 COG0151 PurD Phosphoribosylami 29.8 37 0.00095 14.0 2.9 22 53-74 50-71 (428)
161 TIGR01264 tyr_amTase_E tyrosin 29.7 37 0.00095 14.0 2.9 15 58-72 120-134 (415)
162 PRK13109 flhB flagellar biosyn 29.7 37 0.00095 14.0 5.2 14 411-424 297-310 (358)
163 cd06317 PBP1_ABC_sugar_binding 29.5 38 0.00096 14.0 3.8 64 9-74 22-89 (275)
164 PRK05672 dnaE2 error-prone DNA 28.9 27 0.0007 14.9 1.2 13 55-67 335-347 (1050)
165 COG1179 Dinucleotide-utilizing 28.8 39 0.00098 13.9 6.7 19 360-378 175-193 (263)
166 cd06318 PBP1_ABC_sugar_binding 28.7 39 0.00099 13.9 4.4 35 40-74 54-88 (282)
167 TIGR02733 desat_CrtD C-3',4' d 28.7 28 0.00072 14.8 1.3 41 108-151 2-42 (499)
168 PRK05673 dnaE DNA polymerase I 28.5 26 0.00067 15.0 1.1 21 55-75 343-364 (1143)
169 COG0134 TrpC Indole-3-glycerol 28.5 39 0.001 13.9 2.0 21 194-214 33-53 (254)
170 TIGR01941 nqrF NADH:ubiquinone 28.2 38 0.00096 14.0 1.8 56 103-184 35-91 (425)
171 pfam07247 AATase Alcohol acety 27.9 35 0.00088 14.2 1.6 29 48-76 29-59 (479)
172 PRK13607 proline dipeptidase; 27.8 32 0.00082 14.4 1.4 13 61-73 42-54 (442)
173 TIGR01048 lysA diaminopimelate 27.6 24 0.00062 15.2 0.8 159 6-175 13-193 (431)
174 TIGR02428 pcaJ_scoB_fam 3-oxoa 27.4 31 0.0008 14.5 1.3 44 175-225 14-59 (208)
175 COG3977 Alanine-alpha-ketoisov 26.8 42 0.0011 13.7 2.8 21 368-390 319-339 (417)
176 PRK06375 consensus 26.7 42 0.0011 13.7 2.4 33 426-461 345-378 (381)
177 cd06319 PBP1_ABC_sugar_binding 26.7 42 0.0011 13.7 3.2 34 40-73 54-87 (277)
178 COG1168 MalY Bifunctional PLP- 26.5 42 0.0011 13.7 2.9 40 419-462 345-385 (388)
179 PRK09331 Sep-tRNA:Cys-tRNA syn 26.5 42 0.0011 13.7 3.3 78 41-131 76-156 (386)
180 TIGR01361 DAHP_synth_Bsub phos 26.1 43 0.0011 13.6 4.0 25 284-309 135-159 (262)
181 cd06502 TA_like Low-specificit 26.0 43 0.0011 13.6 5.4 61 2-66 8-72 (338)
182 cd06316 PBP1_ABC_sugar_binding 25.7 44 0.0011 13.6 4.2 34 40-73 55-88 (294)
183 PRK01474 atpC F0F1 ATP synthas 25.7 35 0.00089 14.2 1.3 34 169-212 5-38 (112)
184 COG4706 Predicted 3-hydroxylac 25.5 22 0.00057 15.5 0.3 104 98-216 25-131 (161)
185 TIGR01622 SF-CC1 splicing fact 25.3 45 0.0011 13.6 2.9 51 190-244 246-297 (531)
186 COG0355 AtpC F0F1-type ATP syn 25.1 34 0.00086 14.3 1.1 33 169-211 4-36 (135)
187 PRK10241 hydroxyacylglutathion 25.1 45 0.0011 13.5 2.0 23 44-69 24-46 (251)
188 PRK13448 atpC F0F1 ATP synthas 25.0 38 0.00098 14.0 1.4 33 169-211 4-36 (135)
189 TIGR01265 tyr_nico_aTase tyros 24.6 46 0.0012 13.5 3.1 33 227-263 199-231 (424)
190 KOG4660 consensus 24.4 37 0.00095 14.0 1.2 10 145-154 232-241 (549)
191 cd00886 MogA_MoaB MogA_MoaB fa 24.4 46 0.0012 13.4 4.7 37 42-78 36-73 (152)
192 PRK12270 kgd alpha-ketoglutara 24.1 47 0.0012 13.4 1.9 19 56-74 252-270 (1234)
193 PRK09701 D-allose transporter 23.3 49 0.0012 13.3 4.4 35 40-74 81-115 (311)
194 COG2008 GLY1 Threonine aldolas 23.1 49 0.0013 13.3 5.3 12 4-15 12-23 (342)
195 pfam10254 Pacs-1 PACS-1 cytoso 22.9 43 0.0011 13.7 1.3 58 9-67 2-72 (413)
196 TIGR00730 TIGR00730 conserved 22.4 33 0.00084 14.4 0.6 13 209-221 142-154 (205)
197 TIGR01326 OAH_OAS_sulfhy O-ace 22.4 51 0.0013 13.2 2.0 21 51-71 158-180 (434)
198 PRK04165 acetyl-CoA decarbonyl 21.8 52 0.0013 13.1 6.0 23 53-75 47-69 (454)
199 PRK11337 DNA-binding transcrip 21.8 52 0.0013 13.1 6.3 17 448-464 274-290 (293)
200 PRK09147 aminotransferase; Pro 21.6 53 0.0013 13.1 1.9 11 451-461 385-395 (397)
201 TIGR00603 rad25 DNA repair hel 21.4 49 0.0013 13.3 1.4 58 40-97 263-323 (756)
202 PRK13451 atpC F0F1 ATP synthas 21.2 47 0.0012 13.4 1.2 34 169-212 1-34 (101)
203 TIGR02463 MPGP_rel mannosyl-3- 21.2 53 0.0014 13.1 2.4 13 233-245 17-29 (224)
204 TIGR02477 PFKA_PPi diphosphate 21.1 54 0.0014 13.0 2.8 38 423-463 459-496 (566)
205 PRK05839 hypothetical protein; 21.1 54 0.0014 13.0 1.6 20 95-117 73-92 (376)
206 PRK05996 motB flagellar motor 21.1 54 0.0014 13.0 2.2 34 352-387 330-363 (431)
207 COG0514 RecQ Superfamily II DN 21.1 27 0.00069 14.9 -0.0 46 48-96 19-64 (590)
208 CHL00063 atpE ATP synthase CF1 20.5 49 0.0012 13.3 1.2 34 168-211 2-35 (133)
209 TIGR03542 DAPAT_plant LL-diami 20.4 56 0.0014 12.9 2.7 33 426-461 369-402 (402)
210 pfam04541 Herpes_U34 Herpesvir 20.3 51 0.0013 13.2 1.3 15 388-402 152-166 (207)
211 KOG4656 consensus 20.3 48 0.0012 13.3 1.1 32 99-131 35-66 (247)
212 PRK13445 consensus 20.2 50 0.0013 13.2 1.2 32 169-210 3-34 (132)
No 1
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=100.00 E-value=0 Score=809.15 Aligned_cols=458 Identities=25% Similarity=0.392 Sum_probs=399.0
Q ss_pred CCCCC-HHHHHHHHHHCCCCCEECCHHHHHHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCC
Q ss_conf 96789-89999999733844186698998773134013676687589954998999999999987298299975887776
Q gi|254780761|r 1 MNQLS-LDLIQRFISIVGSEGILDDQKLISPYLTEERKIYHGTSPLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLV 79 (473)
Q Consensus 1 ~~~~~-~~~~~~l~~i~g~~~v~~d~~~~~~~~~d~~~~~~~~p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~ 79 (473)
|+.+. ..++++|+++||+++|++|++++..|++||++.|+..|.+||+|+|+|||++||++|+++++||+|||||||++
T Consensus 13 ~p~~~~~~ll~~L~~~lg~~~Vl~~~~~l~~y~~D~~~~~~~~P~aVv~P~s~eeV~~iv~~a~~~~ipvvprGggTgL~ 92 (499)
T PRK11230 13 LPDVDRTALLAALREHLPDLEILHTDEDLRPYECDGLSAYRTTPLLVVLPKQMEQVQALLAVCHRLRVPVVARGAGTGLS 92 (499)
T ss_pred CCCCCHHHHHHHHHHHCCCCCEECCHHHHHHHCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 99789999999999767985188588897651357865566898889940999999999999998799099978983226
Q ss_pred CCCEECCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCHHH
Q ss_conf 54010488866999763002774211237345511442002222100123222344334321113112221235640001
Q gi|254780761|r 80 GGQIPRKNRKDIILSIKRMNRIRDIDLRSNTIAVDAGINLFNVQKIAEKNHRLFPLSLPSEKYCHIGGNLATNAGGTAVL 159 (473)
Q Consensus 80 G~~~p~~~~~~vvld~~~mn~il~id~~~~~v~veaGv~~~~l~~~l~~~g~~~p~~p~s~~~aTvGG~ia~~~~G~~s~ 159 (473)
||++|.. ++|+||++|||||++||+++++++|||||++.+|+++|+++|++||+||+|..+|||||||||||+|+++.
T Consensus 93 Gga~p~~--~gIvl~l~rmn~Ileid~~~~~v~VeaGv~~~~l~~~l~~~Gl~~p~dP~S~~~~tIGG~iAtNAgG~~~~ 170 (499)
T PRK11230 93 GGALPLE--KGVLLVMARFNRILDIDPVGRRARVQPGVRNLAISQAAAPHGLYYAPDPSSQIACSIGGNVAENAGGVHCL 170 (499)
T ss_pred CCCCCCC--CEEEEEECCCCCEEEEECCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCEE
T ss_conf 5812689--82999800127706882689979994581079999989866985488987233552530773078786303
Q ss_pred HCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 12573334443323466653021122013322322233322346545431012799404675443210000135268999
Q gi|254780761|r 160 SYGNIRHLCLGIEAVLPTGDIWNGMHKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQ 239 (473)
Q Consensus 160 ~yG~~~d~v~~~~vv~~~G~i~~~~~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~ 239 (473)
+||+++|+|+++|||||||++++++. ..++++||||.+||+||||||||||++||||+|+|+.+.+.++.|+|+++|.+
T Consensus 171 rYG~trd~VlglevVlpdG~v~~~g~-~~~~~~GydL~~LfiGSEGTLGIIT~a~LrL~p~P~~~~~~~~~F~~~~~A~~ 249 (499)
T PRK11230 171 KYGLTVHNLLKVEILTLDGERLTLGS-DALDSPGFDLLALFTGSEGMLGVVTEVTVKLLPKPPVAKVLLASFDSVEKAGR 249 (499)
T ss_pred EECCHHHHHHCCEEEECCCCEECCCC-CCCCCCCCCHHHHCCCCCCCEEEEEEEEEEEECCCCEEEEEEECCCCHHHHHH
T ss_conf 31568997510438936886211588-66788984778753577862389989999987478605899733566999999
Q ss_pred HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99751023322222222451799999986144434115753211001113543068999999998888631345653100
Q gi|254780761|r 240 LLQLSQKTAGSMLTAFELISNFILKLVVKHIPNTFSPLSDTSPWYILLEISSTETLERAQNIANTILATGFNKKILTEWI 319 (473)
Q Consensus 240 ~~~~~~~~~~~~~~aiel~d~~~~~~~~~~~~~~~~~~~~~~~~~lli~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (473)
+++.+.+ .+..|+++|++|+..++.+..+... ..+....+++++++.+.+... ....+.+ ...+......+..
T Consensus 250 av~~i~~-~g~~p~a~El~D~~~~~~~~~~~~~---~~p~~~~a~llve~~g~~~~~--~~~~~~~-~~~l~~~g~~~~~ 322 (499)
T PRK11230 250 AVADIIA-AGIIPGGLEMMDNLAIRAAEDFIHA---GYPVDAEAILLCELDGVESDV--QEDCERV-NDVLLAAGATDVR 322 (499)
T ss_pred HHHHHHH-CCCCCEEEEECCHHHHHHHHHHCCC---CCCCCCCCEEEEECCCCHHHH--HHHHHHH-HHHHHHCCCCEEE
T ss_conf 9999986-6998558753047899999875116---999774310233225887889--9999999-9999876983589
Q ss_pred CCCCHHHHHHHHHHCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCEEEEEEECCC
Q ss_conf 158888964433100122112-2235664444210013128999999999988634872289999844986999984277
Q gi|254780761|r 320 LPSLDEEKNAIWCLRNNIPLA-QKREGRSIKHDISVPIGQIPSFLQEVKKSVSSIFPKTRIGLFGHIGDGNIHFNVFPPT 398 (473)
Q Consensus 320 ~~~~~~~~~~lw~~R~~~~~~-~~~~g~~~~~Dvavp~~~l~~~~~~v~~~l~~~~~~~~~~~~gH~g~g~lh~~~~~~~ 398 (473)
++.+++++.++|..|+....+ .+..+..+.+|++||+++++++++.+.+..+++ ..++..|||+||||+|+++....
T Consensus 323 ~a~~~~e~~~lW~~R~~~~~~~~~~~~~~~~~Dv~VP~~~l~~~~~~~~~l~~~~--~~~~~~~gH~GDGNlH~~~~~~~ 400 (499)
T PRK11230 323 LAQDEAERVRFWAGRKNAFPAVGRISPDYYCMDGTIPRRELPGVLEGIARLSQQY--GLRVANVFHAGDGNMHPLILFDA 400 (499)
T ss_pred EECCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHC--CCCEEEEEECCCCCEEEEECCCC
T ss_conf 9489999999999999999999965798257654312210899999999999970--99489999758875044422599
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 888068999999999999999999818918997355565688888731789999999998871537778887649
Q gi|254780761|r 399 DENQDEFLSLHWNTINNIVYSVVLSYGGSIAAEHGIGQLHKKRLEGILEPTEIKIMKKIKEIFDPAGIMNPGKFL 473 (473)
Q Consensus 399 ~~~~~~~~~~~~~~i~~~~~~~~~~~gG~is~eHGiG~~k~~~~~~~~~~~~~~~l~~iK~~~DP~gilNPGkli 473 (473)
....+ ...++++.+.++++++++|||||||||||+.|++|+..++++..+++|++||+.|||+|||||||+|
T Consensus 401 ~~~~~---~~~~~~~~~~v~~~v~~~GGsiS~EHGiG~~k~~~l~~~~~~~~~~lmr~IK~a~DP~gILNPGKvi 472 (499)
T PRK11230 401 NEPGE---LERAEALGGKILELCVEVGGSITGEHGVGREKINQMCAQFNSDEITLFHAVKAAFDPDGLLNPGKNI 472 (499)
T ss_pred CCHHH---HHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 99799---9999999999999999869779778503134088998860999999999999985977588999356
No 2
>TIGR00387 glcD glycolate oxidase, subunit GlcD; InterPro: IPR004490 The glc locus of Escherichia coli encodes the subunits of glycolate oxidase and the glc regulator protein. The subunit GlcD is similar to that of several D-lactate dehydrogenases, including that of E. coli. Glycolate oxidase has been found to have some D-lactate dehydrogenase activity.; GO: 0008891 glycolate oxidase activity, 0009339 glycolate oxidase complex.
Probab=100.00 E-value=0 Score=734.96 Aligned_cols=418 Identities=31% Similarity=0.469 Sum_probs=368.7
Q ss_pred EEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCCCEEEE-ECCCCCCCCCCCCCCCEEEECCCCCHHHHHH
Q ss_conf 995499899999999998729829997588777654010488866999-7630027742112373455114420022221
Q gi|254780761|r 46 VLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIIL-SIKRMNRIRDIDLRSNTIAVDAGINLFNVQK 124 (473)
Q Consensus 46 Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~~~~vvl-d~~~mn~il~id~~~~~v~veaGv~~~~l~~ 124 (473)
||+|+++|||++|+++|++|+|||+|||+||+++||++|..+ ++++ =++|||+||+||+++++++|||||+..++.+
T Consensus 1 Vv~P~n~eqv~~Ilk~C~e~ri~~vpRGaGTgLsGGalP~~g--gl~lsv~~~m~~ILeId~~n~~A~VqPGV~~~~~~~ 78 (437)
T TIGR00387 1 VVLPKNTEQVARILKLCHEHRIPIVPRGAGTGLSGGALPVEG--GLVLSVFKRMNKILEIDVVNLTAVVQPGVINLELEQ 78 (437)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCC--CHHHHHHHHHHHHHHCCCCCCEEEECCCEEHHHHHH
T ss_conf 978885789999999874278747852688877665425677--302357788767640047888898747401388999
Q ss_pred HCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 00123222344334321113112221235640001125733344433234666530211220133223222333223465
Q gi|254780761|r 125 IAEKNHRLFPLSLPSEKYCHIGGNLATNAGGTAVLSYGNIRHLCLGIEAVLPTGDIWNGMHKLIKDNSRYDIRDLLIGSE 204 (473)
Q Consensus 125 ~l~~~g~~~p~~p~s~~~aTvGG~ia~~~~G~~s~~yG~~~d~v~~~~vv~~~G~i~~~~~~~~~~~~G~dl~~l~~Gse 204 (473)
.++++||+||+||+|...|||||+||+||||+++.|||.++|||+++||||+||||++++++..|+.+||||++||+|||
T Consensus 79 ~V~~~~l~YpPDPsS~~~~tiGGNiaENaGG~r~lKYG~t~d~VlgLeVV~adGei~~~gg~~~kd~~GydLt~LfvGSE 158 (437)
T TIGR00387 79 AVEEHGLFYPPDPSSQIVSTIGGNIAENAGGVRGLKYGTTVDYVLGLEVVLADGEIIRIGGKTAKDVAGYDLTGLFVGSE 158 (437)
T ss_pred HHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHEEEEEEEECCCCHHHHHCCCCCCCCCCHHHHHHHHHCC
T ss_conf 98737872488801101000476300377530121101122123333466367143211134146688623777887404
Q ss_pred CCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHH--HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 45431012799404675443210000135268999--9975102332222222245179999998614443411575321
Q gi|254780761|r 205 GTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQ--LLQLSQKTAGSMLTAFELISNFILKLVVKHIPNTFSPLSDTSP 282 (473)
Q Consensus 205 GtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~--~~~~~~~~~~~~~~aiel~d~~~~~~~~~~~~~~~~~~~~~~~ 282 (473)
|||||+||+||||.|+||...+....|+++|+|++ ++..++. ++..|+++|+||+.+++++.+...... +|....
T Consensus 159 GtLGi~Te~tlKllpkPe~~~~~lA~F~s~E~A~qt~aV~~iia-~~i~Pa~mEflDn~si~A~Ed~~~~gC--yP~~a~ 235 (437)
T TIGR00387 159 GTLGIVTEITLKLLPKPELKKVLLALFDSIEKAAQTLAVADIIA-AGIIPAGMEFLDNLSIKAVEDIVKIGC--YPVDAK 235 (437)
T ss_pred CHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHCHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHHHCCC--CCCCHH
T ss_conf 15799998998630678521342202268777732011224463-266104555532467899988874589--887864
Q ss_pred CEECCCCCCCCHHHHHH-HHHHHHHHHHCCC-CCCCCCCCCCCHH-HHHHHHHHCCCCCCC-CCCC----CCCCCCCCCH
Q ss_conf 10011135430689999-9999888863134-5653100158888-964433100122112-2235----6644442100
Q gi|254780761|r 283 WYILLEISSTETLERAQ-NIANTILATGFNK-KILTEWILPSLDE-EKNAIWCLRNNIPLA-QKRE----GRSIKHDISV 354 (473)
Q Consensus 283 ~~lli~~~g~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~lw~~R~~~~~~-~~~~----g~~~~~Dvav 354 (473)
..++++.++.+...... .+....++..+.. ....+...+.+++ ++.++|..|+++..+ .+.. +..+.+|++|
T Consensus 236 a~Ll~e~dg~~~~Ve~~~~~~~~~~e~~~~~n~~a~~~~~Aq~E~n~~~~~~~~R~~A~~a~~~~~Gtkk~~~~~eD~tV 315 (437)
T TIGR00387 236 AILLVELDGVEEEVERDISALLEKIEKICKKNAGAVDVQIAQDEENERLKLWAGRRNAFKAASKLSGTKKPKYLIEDGTV 315 (437)
T ss_pred HCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCC
T ss_conf 45065415771478999999999999998621552024777636889999886228899999874055575525623300
Q ss_pred HHHHHHHHHHHHHHHHHHHCCC----CEEEEEEEECCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 1312899999999998863487----228999984498699998427788806899999999999999999981891899
Q gi|254780761|r 355 PIGQIPSFLQEVKKSVSSIFPK----TRIGLFGHIGDGNIHFNVFPPTDENQDEFLSLHWNTINNIVYSVVLSYGGSIAA 430 (473)
Q Consensus 355 p~~~l~~~~~~v~~~l~~~~~~----~~~~~~gH~g~g~lh~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gG~is~ 430 (473)
|+++|+.+++++.++-++++.. ..++.|||+||||||++++...++ .+. ..+.+++..++++.++++|||||+
T Consensus 316 PR~~Lp~~l~~I~~ia~Ky~~~~~ANF~i~~~gHaGDGNlHP~i~~d~~~--~~~-~er~e~~~~EI~e~a~~LGGtiSG 392 (437)
T TIGR00387 316 PRSKLPEVLKGIADIASKYDDLAVANFKIFIVGHAGDGNLHPLILTDEED--KGE-MERVEELGGEILELAIELGGTISG 392 (437)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCCCCEEECCCCC--HHH-HHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 45677899999999997518634540267788741778754322237886--668-999999999999987222770553
Q ss_pred ECCCCHHHHH----HHHHHCCHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 7355565688----8887317899999999988715377788876
Q gi|254780761|r 431 EHGIGQLHKK----RLEGILEPTEIKIMKKIKEIFDPAGIMNPGK 471 (473)
Q Consensus 431 eHGiG~~k~~----~~~~~~~~~~~~~l~~iK~~~DP~gilNPGk 471 (473)
|||||..|.+ ||+..+.+..+++||+||+.|||+|||||||
T Consensus 393 EHGIG~~K~~Glem~m~~~f~~~~le~m~~~K~aFDP~NiLNPGK 437 (437)
T TIGR00387 393 EHGIGVEKAEGLEMFMPLKFNEKELETMRAIKKAFDPDNILNPGK 437 (437)
T ss_pred ECCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 115465344542468675228568899999998609898888889
No 3
>KOG1232 consensus
Probab=100.00 E-value=0 Score=624.08 Aligned_cols=463 Identities=36% Similarity=0.607 Sum_probs=430.1
Q ss_pred CCCCHHHHHHHHHHCCCCCEECCHHHHHHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCC
Q ss_conf 67898999999973384418669899877313401367668758995499899999999998729829997588777654
Q gi|254780761|r 2 NQLSLDLIQRFISIVGSEGILDDQKLISPYLTEERKIYHGTSPLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGG 81 (473)
Q Consensus 2 ~~~~~~~~~~l~~i~g~~~v~~d~~~~~~~~~d~~~~~~~~p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~ 81 (473)
.+++++.+.-|++|+|.+.+.+|++++..|-+||...|++....|++|.|++||++|++|||+.++.|+|+||.|+++||
T Consensus 49 a~l~~~Dl~~Fk~iLg~d~~~~~~edL~~~n~dwm~kyrG~sklvL~Pkst~eVS~ILkYCn~~kLAVVPQGGNTgLVGg 128 (511)
T KOG1232 49 AKLDSKDLAYFKSILGKDEVSTDKEDLENFNTDWMKKYRGQSKLVLKPKSTEEVSAILKYCNDRKLAVVPQGGNTGLVGG 128 (511)
T ss_pred CCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCC
T ss_conf 41457789999998565444568677754236789854687507865898899999998615050787347887665567
Q ss_pred CEECCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHC
Q ss_conf 01048886699976300277421123734551144200222210012322234433432111311222123564000112
Q gi|254780761|r 82 QIPRKNRKDIILSIKRMNRIRDIDLRSNTIAVDAGINLFNVQKIAEKNHRLFPLSLPSEKYCHIGGNLATNAGGTAVLSY 161 (473)
Q Consensus 82 ~~p~~~~~~vvld~~~mn~il~id~~~~~v~veaGv~~~~l~~~l~~~g~~~p~~p~s~~~aTvGG~ia~~~~G~~s~~y 161 (473)
++|..+ .|||++.+||+|+.+|+.+++.+|+||+++.++++.|+++|++||.|.++.++|.|||++||||+|.+-.||
T Consensus 129 SVPvfD--EiVlsl~~mNKi~sfDevsGil~cdaG~ILen~d~~l~e~g~m~PlDLgAKgsCqiGG~vsTnAGGlrllRY 206 (511)
T KOG1232 129 SVPVFD--EIVLSLGLMNKILSFDEVSGILKCDAGVILENADNFLAEKGYMFPLDLGAKGSCQIGGNVSTNAGGLRLLRY 206 (511)
T ss_pred CCCCHH--HHHHHHHHHCCCCCCCCCCCEEEECCCEEEHHHHHHHHHCCCEEEECCCCCCCCEECCEEECCCCCEEEEEE
T ss_conf 631338--886426654352343555535995354574235778986493554137876542346664216775579986
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 57333444332346665302112201332232223332234654543101279940467544321000013526899999
Q gi|254780761|r 162 GNIRHLCLGIEAVLPTGDIWNGMHKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLL 241 (473)
Q Consensus 162 G~~~d~v~~~~vv~~~G~i~~~~~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~ 241 (473)
|+..-+|+|+|+|+|+|+|+...+...|+++|||+.|||+||||||||||++++-..|+|+..-..++..++|++..+.+
T Consensus 207 GsLHgsvLGle~Vlp~G~vl~~~~slRKDNTgydlkhLFIGSEGtlGVvT~vSil~~~kpksvn~af~gi~sf~~v~k~f 286 (511)
T KOG1232 207 GSLHGSVLGLEVVLPNGTVLDLLSSLRKDNTGYDLKHLFIGSEGTLGVVTKVSILAPPKPKSVNVAFIGIESFDDVQKVF 286 (511)
T ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHCCCCCCCCCHHHEECCCCEEEEEEEEEEEECCCCCCEEEEEECCCCHHHHHHHH
T ss_conf 35343023469984797202535543446766651541314776146886679961599752027887142399999999
Q ss_pred HHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 75102332222222245179999998614443411575321100111354306899999999888863134565310015
Q gi|254780761|r 242 QLSQKTAGSMLTAFELISNFILKLVVKHIPNTFSPLSDTSPWYILLEISSTETLERAQNIANTILATGFNKKILTEWILP 321 (473)
Q Consensus 242 ~~~~~~~~~~~~aiel~d~~~~~~~~~~~~~~~~~~~~~~~~~lli~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (473)
-+..+.-+..++++|+||+.+++.+.+++.+...|+.+..+.++++|.+|.+...+.+++ .+++........+.+..++
T Consensus 287 v~Aks~L~EILSafElmD~~s~~~~~~~l~~l~~pl~~~~pFyiLiETsGSn~dhD~eKl-~afl~d~lek~lIsDGv~a 365 (511)
T KOG1232 287 VEAKSNLTEILSAFELMDNASMELVLEYLKDLHFPLEDEHPFYILIETSGSNKDHDEEKL-TAFLEDCLEKGLISDGVLA 365 (511)
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCHHHH-HHHHHHHHHHCCCCCCEEC
T ss_conf 999878999998987640147899998743378975689862899983588865409999-9999876651532055121
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCEEEEEEECCCCCC
Q ss_conf 88889644331001221122235664444210013128999999999988634872289999844986999984277888
Q gi|254780761|r 322 SLDEEKNAIWCLRNNIPLAQKREGRSIKHDISVPIGQIPSFLQEVKKSVSSIFPKTRIGLFGHIGDGNIHFNVFPPTDEN 401 (473)
Q Consensus 322 ~~~~~~~~lw~~R~~~~~~~~~~g~~~~~Dvavp~~~l~~~~~~v~~~l~~~~~~~~~~~~gH~g~g~lh~~~~~~~~~~ 401 (473)
.+.++..++|.+|+.+|.+....|..+.+|++.|+..+-.++..+++++....--.++.-|||+||||+|.|+-.
T Consensus 366 ~d~~~~~~lW~~Re~ip~a~~~~g~vyKyDvSLpL~d~Y~lvn~~~eRl~~~~l~~d~~gyGHlGDgNlHLNia~----- 440 (511)
T KOG1232 366 QDEAEAQKLWKIRESIPEALQKAGGVYKYDVSLPLEDLYNLVNVMKERLGEAALVGDIVGYGHLGDGNLHLNIAV----- 440 (511)
T ss_pred CCHHHHHHHHHHHHCCHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEH-----
T ss_conf 788899999999741278897569778862366289999999999986221444302014454457842576339-----
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 068999999999999999999818918997355565688888731789999999998871537778887649
Q gi|254780761|r 402 QDEFLSLHWNTINNIVYSVVLSYGGSIAAEHGIGQLHKKRLEGILEPTEIKIMKKIKEIFDPAGIMNPGKFL 473 (473)
Q Consensus 402 ~~~~~~~~~~~i~~~~~~~~~~~gG~is~eHGiG~~k~~~~~~~~~~~~~~~l~~iK~~~DP~gilNPGkli 473 (473)
.++.......+..-+++.+.+++||||+|||+|..|++|+...-+|+.+.+|+.+|+.|||+|||||-|.|
T Consensus 441 -~efn~~iek~lePfvYE~vs~~~GSISAEHGiG~lKk~~~~ysKspe~i~lmk~lKn~~DPngILnPYK~i 511 (511)
T KOG1232 441 -REFNKEIEKLLEPFVYEWVSKHKGSISAEHGIGFLKKPYLHYSKSPEEILLMKDLKNLFDPNGILNPYKYI 511 (511)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf -98768898753159999887248712200055400267443179989999999988636974357744459
No 4
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=0 Score=581.29 Aligned_cols=451 Identities=32% Similarity=0.532 Sum_probs=372.8
Q ss_pred HHHHCCCCCEECCHHHHHHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCCCEE
Q ss_conf 99733844186698998773134013676687589954998999999999987298299975887776540104888669
Q gi|254780761|r 12 FISIVGSEGILDDQKLISPYLTEERKIYHGTSPLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDI 91 (473)
Q Consensus 12 l~~i~g~~~v~~d~~~~~~~~~d~~~~~~~~p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~~~~v 91 (473)
|+.+++..++.+++..+..|..|++ .+...|.+|++|.|++||+++|++|+++++||+|||+|||++|+++|. + +|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~v~~p~s~~ev~~iv~~a~~~~~~v~prG~gt~~~g~~~~~-~--gv 77 (459)
T COG0277 2 LKRILGELNVLTDPADRAAYRTDAS-VYRGLPLAVVFPKSEEEVAAILRLANENGIPVVPRGGGTSLSGGAVPD-G--GV 77 (459)
T ss_pred HHHHHCCCCCCCCHHHHHHHCCCCC-CCCCCCCEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCC-C--EE
T ss_conf 6675174333378667754115865-456788658778999999999999997599089978997776773578-6--49
Q ss_pred EEECCCCCCCCCCCCCCCEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHCCCCCCCCCCC
Q ss_conf 99763002774211237345511442002222100123222344334321113112221235640001125733344433
Q gi|254780761|r 92 ILSIKRMNRIRDIDLRSNTIAVDAGINLFNVQKIAEKNHRLFPLSLPSEKYCHIGGNLATNAGGTAVLSYGNIRHLCLGI 171 (473)
Q Consensus 92 vld~~~mn~il~id~~~~~v~veaGv~~~~l~~~l~~~g~~~p~~p~s~~~aTvGG~ia~~~~G~~s~~yG~~~d~v~~~ 171 (473)
+|||++||+|+++|+++++++||||+++.+|+++|+++|+++|++|++...|||||+||||++|++|.+||.++|+|+++
T Consensus 78 vl~l~~mn~i~~iD~~~~~~~v~aGv~l~~l~~~l~~~Gl~~p~~p~s~~~~tvGG~ia~~~~G~~~~~yG~~~d~v~~l 157 (459)
T COG0277 78 VLDLSRLNRILEIDPEDGTATVQAGVTLEDLEKALAPHGLFLPVDPSSSGTATIGGNIATNAGGLRSLRYGLTRDNVLGL 157 (459)
T ss_pred EEECHHCCCCEEECCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHEEEEE
T ss_conf 99863306865446889989985896889999999976982488887567656887714799883413467663416579
Q ss_pred CCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC---CCC
Q ss_conf 23466653021122013322322233322346545431012799404675443210000135268999997510---233
Q gi|254780761|r 172 EAVLPTGDIWNGMHKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ---KTA 248 (473)
Q Consensus 172 ~vv~~~G~i~~~~~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~---~~~ 248 (473)
++|+|||++++++++..|+.+||||.++|+||||||||||++||||+|.|+...+.+..|++++.+........ ...
T Consensus 158 ~vV~~~G~~~~~~~~~~k~~~g~dl~~l~iGs~GtlGiit~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (459)
T COG0277 158 RVVLPDGEILRLGRKLRKDNAGYDLTALFVGSEGTLGIITEATLKLLPLPETKATAVAGFPSIEAAARLAVAAIALLEAL 237 (459)
T ss_pred EEECCCCCEEECCCCCCCCCCCCHHHHHHCCCCCCCEEEEEEEEEEECCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCC
T ss_conf 99908986897146556776551047764558776768999999973488633799832797788888999986431024
Q ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Q ss_conf 22222222451799999986144434115753211001113543068999999998888631345653100158888964
Q gi|254780761|r 249 GSMLTAFELISNFILKLVVKHIPNTFSPLSDTSPWYILLEISSTETLERAQNIANTILATGFNKKILTEWILPSLDEEKN 328 (473)
Q Consensus 249 ~~~~~aiel~d~~~~~~~~~~~~~~~~~~~~~~~~~lli~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (473)
...+.++|+++.. ........... ..+......+++++.+.. ......................+..+.....+..
T Consensus 238 ~~~~~~~e~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (459)
T COG0277 238 GVIPAALEFMDRP-IKAAEAYLGGG--ALPLEAPARLLVEVEGSD-EAAVDEALEALGELLLEHGLARDLVVAQDLAEAA 313 (459)
T ss_pred CCCHHHHHCCCCC-HHHHHHHCCCC--CCCCCCCCEEEEEECCCC-CHHHHHHHHHHHHHHHHCCCCCCEEECCCHHHHH
T ss_conf 6641444103420-12223431565--566556625899844775-0668999999998876426533225516867788
Q ss_pred HHHHHCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCEEEEEEECCCCCCCHHHHH
Q ss_conf 433100122112223566-4444210013128999999999988634872289999844986999984277888068999
Q gi|254780761|r 329 AIWCLRNNIPLAQKREGR-SIKHDISVPIGQIPSFLQEVKKSVSSIFPKTRIGLFGHIGDGNIHFNVFPPTDENQDEFLS 407 (473)
Q Consensus 329 ~lw~~R~~~~~~~~~~g~-~~~~Dvavp~~~l~~~~~~v~~~l~~~~~~~~~~~~gH~g~g~lh~~~~~~~~~~~~~~~~ 407 (473)
.+|..|+........... .+.+|+++|.++++++++.+.+.+.+..+...+..++|.+|||+|+++..... ..+...
T Consensus 314 ~~~~~r~~~~~~~~~~~~~~~~~d~~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~--~~~~~~ 391 (459)
T COG0277 314 RLWLARKGALAAAGALGPGVIQEDVVVPLEALPEFLREILALLDKAGLALRVALFGHAGDGNLHLNILYDVG--DEAEEL 391 (459)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEEECCC--CHHHHH
T ss_conf 878866641454532156632103150588889999999998864166651589998789845663320666--326789
Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 999999999999999818918997355565688888731789999999998871537778887649
Q gi|254780761|r 408 LHWNTINNIVYSVVLSYGGSIAAEHGIGQLHKKRLEGILEPTEIKIMKKIKEIFDPAGIMNPGKFL 473 (473)
Q Consensus 408 ~~~~~i~~~~~~~~~~~gG~is~eHGiG~~k~~~~~~~~~~~~~~~l~~iK~~~DP~gilNPGkli 473 (473)
....++.+.+.+.+.++||++++|||+|..|.+|+..+.+ +.+++|+++|+.|||+|||||||++
T Consensus 392 ~~~~~~~~~~~~~~~~~gG~~~~~h~~g~~~~~~~~~~~~-~~~~~~~~~k~~~DP~~i~npg~~~ 456 (459)
T COG0277 392 ARAEALNEAIEALAVELGGSISGEHGIGRTKAEFLELEPG-EAWALLRAIKRAFDPNGIFNPGKLF 456 (459)
T ss_pred HHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 9999999889999998099630453201424555354164-7999999999860998667698647
No 5
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=100.00 E-value=0 Score=508.15 Aligned_cols=345 Identities=20% Similarity=0.284 Sum_probs=250.2
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCHHHHHHHCCCC
Q ss_conf 99899999999998729829997588777654010488866999763002774211237345511442002222100123
Q gi|254780761|r 50 SCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDIDLRSNTIAVDAGINLFNVQKIAEKN 129 (473)
Q Consensus 50 ~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~~~~vvld~~~mn~il~id~~~~~v~veaGv~~~~l~~~l~~~ 129 (473)
.+++||+++||+|+++++||+|||+||+..+|..| .+++|||++||||+++|+++++++||||+++.+|+++|+++
T Consensus 2 ~~taev~e~Vr~A~~~~~pv~p~G~gT~~~~G~~~----~g~vl~l~rm~~I~~~~~~d~~v~VeaGv~~~~L~~~la~~ 77 (351)
T PRK11282 2 DISAALLERVRQAAADGTPLRIRGGGSKAFYGRAL----AGEVLDTRAHRGIVSYDPTELVITARAGTPLAELEAALAEA 77 (351)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCC----CCEEEECCCCCCCEEECCCCCEEEECCCCCHHHHHHHHHHC
T ss_conf 61899999999999879928998999788878899----98598852468717985888979995898199999999970
Q ss_pred CCCCCCCCCCC-CCCCCHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22234433432-11131122212356400011257333444332346665302112201332232223332234654543
Q gi|254780761|r 130 HRLFPLSLPSE-KYCHIGGNLATNAGGTAVLSYGNIRHLCLGIEAVLPTGDIWNGMHKLIKDNSRYDIRDLLIGSEGTLG 208 (473)
Q Consensus 130 g~~~p~~p~s~-~~aTvGG~ia~~~~G~~s~~yG~~~d~v~~~~vv~~~G~i~~~~~~~~~~~~G~dl~~l~~GseGtlG 208 (473)
|++||+||+++ ..|||||+||||++|+++.|||.++|+|+++|||+|||+++++++++.|+++||||.+||+|||||||
T Consensus 78 G~~l~~dPp~~~~~aTIGG~vAtNagG~r~~rYG~tRD~VLGl~vVl~dG~vi~~Gg~~~KnvaGYDL~~L~vGSEGTLG 157 (351)
T PRK11282 78 GQMLPFEPPHFGGGATVGGMVAAGLSGPRRPWAGAVRDFVLGTRLINGRGEHLRFGGQVMKNVAGYDVSRLMAGSLGTLG 157 (351)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHEEEEEEECCCCEEEEECCEECCCCCCCCHHHHHCCCCCCCE
T ss_conf 88224588777875434778882799742013588888375469987895699608802467877587787455875001
Q ss_pred CEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCC
Q ss_conf 10127994046754432100001352689999975102332222222245179999998614443411575321100111
Q gi|254780761|r 209 IITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQKTAGSMLTAFELISNFILKLVVKHIPNTFSPLSDTSPWYILLE 288 (473)
Q Consensus 209 iITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~~~~~~~~~aiel~d~~~~~~~~~~~~~~~~~~~~~~~~~lli~ 288 (473)
||||+||||+|+|+...+..+.|++ .++++.+...... +..+++.. +. ...+.++
T Consensus 158 vITeatLrL~P~P~~~~t~~~~~~~-~~A~~~~~~~~~~-~lp~~~~~--------------------~~---~~~l~v~ 212 (351)
T PRK11282 158 VLLEVSLKVLPRPRAELTLRLEMDA-AEALRKLNEWGGQ-PLPISASC--------------------WD---GGTLHLR 212 (351)
T ss_pred EEEEEEEEECCCCCCCEEEEECCCH-HHHHHHHHHHHCC-CCCCCHHH--------------------CC---CCEEEEE
T ss_conf 2258899974788641689850798-9999999998468-99863100--------------------46---8735898
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 354306899999999888863134565310015888896443310-0122112223566444421001312899999999
Q gi|254780761|r 289 ISSTETLERAQNIANTILATGFNKKILTEWILPSLDEEKNAIWCL-RNNIPLAQKREGRSIKHDISVPIGQIPSFLQEVK 367 (473)
Q Consensus 289 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lw~~-R~~~~~~~~~~g~~~~~Dvavp~~~l~~~~~~v~ 367 (473)
+.+.+.... ...+.+ ... ...+...+|.. |+........ ...+ .++++|....+..+
T Consensus 213 ~~g~~~av~--~a~~~l-----~g~---------~~~~~~~~W~~~r~~~~~~~~~-~~~l-~r~~vp~~~~~~~l---- 270 (351)
T PRK11282 213 LSGAEGAVK--AARERL-----GGE---------ELAEAEAFWQGLREQTLPFFAD-GRPL-WRLSLPSAAPPLDL---- 270 (351)
T ss_pred ECCCHHHHH--HHHHHH-----CCC---------CHHHHHHHHHHHHHHHHHHHCC-CCCE-EEEECCCCCCCCCC----
T ss_conf 158789999--999985-----553---------2011366899988742443137-8851-57851664442338----
Q ss_pred HHHHHHCCCCEEEEEEEECCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHCC
Q ss_conf 99886348722899998449869999842778880689999999999999999998189189973555656888887317
Q gi|254780761|r 368 KSVSSIFPKTRIGLFGHIGDGNIHFNVFPPTDENQDEFLSLHWNTINNIVYSVVLSYGGSIAAEHGIGQLHKKRLEGILE 447 (473)
Q Consensus 368 ~~l~~~~~~~~~~~~gH~g~g~lh~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gG~is~eHGiG~~k~~~~~~~~~ 447 (473)
+.... .+.+++..+. .. +...+.+.+.+.++||++|.+||++..+..|. .++
T Consensus 271 -------~~~~~---~~~g~~~~~~-----~~-----------~~~~~~i~~~a~~~gG~~t~~~g~~~~~~~~~--~l~ 322 (351)
T PRK11282 271 -------PGEQL---IDWGGAQRWL-----KS-----------DADAAAIRAAAAAAGGHATLFRAGDRSDGVFH--PLP 322 (351)
T ss_pred -------CCCEE---EECCCCHHHH-----CC-----------CCCHHHHHHHHHHCCCEEEEEECCCCCCCCCC--CCC
T ss_conf -------70016---7448852021-----25-----------56899999999984987999977764556567--799
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 89999999998871537778887649
Q gi|254780761|r 448 PTEIKIMKKIKEIFDPAGIMNPGKFL 473 (473)
Q Consensus 448 ~~~~~~l~~iK~~~DP~gilNPGkli 473 (473)
+..+++|++||++|||+||||||||.
T Consensus 323 ~~~~~lmr~IK~afDP~giLNPGKlf 348 (351)
T PRK11282 323 APLLRIHRRLKQAFDPAGIFNPGRLY 348 (351)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 99999999889851987788874037
No 6
>KOG1233 consensus
Probab=100.00 E-value=0 Score=497.95 Aligned_cols=451 Identities=23% Similarity=0.287 Sum_probs=336.0
Q ss_pred CHHHHHHHHHHCCCCCEECCHHHHHHHH-------CC----CCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 9899999997338441866989987731-------34----013676687589954998999999999987298299975
Q gi|254780761|r 5 SLDLIQRFISIVGSEGILDDQKLISPYL-------TE----ERKIYHGTSPLVLLPSCTHEVSQILKLATETNTSITPQG 73 (473)
Q Consensus 5 ~~~~~~~l~~i~g~~~v~~d~~~~~~~~-------~d----~~~~~~~~p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prG 73 (473)
..+++..|+. .+|..+.+.+.+.. .| +...+...|+.||+|++++||++||++|++|++.++|.|
T Consensus 116 Nedflh~Lke----t~isyS~Ea~dRl~R~HGhtlhdi~~Lregkf~RiPDiVvWP~chdevVkiv~lA~khN~~iiPiG 191 (613)
T KOG1233 116 NEDFLHFLKE----TKISYSNEARDRLMRGHGHTLHDIINLREGKFPRIPDIVVWPKCHDEVVKIVELAMKHNCAIIPIG 191 (613)
T ss_pred CHHHHHHHHH----CCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCEEECCCCHHHHHHHHHHHHHCCEEEEEEC
T ss_conf 5078889876----447500467778886167119888887517657888557636623899999988854676999747
Q ss_pred CCCCCCCCCEECCC--CCEEEEECCCCCCCCCCCCCCCEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHC
Q ss_conf 88777654010488--8669997630027742112373455114420022221001232223443343211131122212
Q gi|254780761|r 74 GNTGLVGGQIPRKN--RKDIILSIKRMNRIRDIDLRSNTIAVDAGINLFNVQKIAEKNHRLFPLSLPSEKYCHIGGNLAT 151 (473)
Q Consensus 74 ggt~~~G~~~p~~~--~~~vvld~~~mn~il~id~~~~~v~veaGv~~~~l~~~l~~~g~~~p~~p~s~~~aTvGG~ia~ 151 (473)
||||++++....+. +.-|.||++.||||||+|+++.|+++|+|++.++|++.|++.|++.+|.|.|.++||+|||++|
T Consensus 192 GGTSVs~al~cP~~E~R~iislDtsqmnriLWidreNLT~~~eaGIvGQ~LERqL~~~G~t~GHEPDS~EFSTlGGWVsT 271 (613)
T KOG1233 192 GGTSVSNALDCPETEKRAIISLDTSQMNRILWIDRENLTCRAEAGIVGQSLERQLNKKGFTCGHEPDSIEFSTLGGWVST 271 (613)
T ss_pred CCCCCCCCCCCCCCCCEEEEEECHHHHHHEEEECCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCEEEECCCCEEEE
T ss_conf 96401353148865440589702775202168535661699853742077999986448644789884655313431221
Q ss_pred CCCCCHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCC
Q ss_conf 35640001125733344433234666530211220133223222333223465454310127994046754432100001
Q gi|254780761|r 152 NAGGTAVLSYGNIRHLCLGIEAVLPTGDIWNGMHKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAV 231 (473)
Q Consensus 152 ~~~G~~s~~yG~~~d~v~~~~vv~~~G~i~~~~~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f 231 (473)
|+||++...||+|+|.|+-+.||+|.|.|.+ ...+|+-++|||+.|+++|||||||||||+|+|++|.|+-+++..+.|
T Consensus 272 RASGMKKN~YGNIEDLVVh~~mVtP~Giiek-~Cq~PRmS~GPDihh~IlGSEGTLGVitEvtiKirPiPe~~ryGS~aF 350 (613)
T KOG1233 272 RASGMKKNKYGNIEDLVVHLNMVTPKGIIEK-QCQVPRMSSGPDIHHIILGSEGTLGVITEVTIKIRPIPEVKRYGSFAF 350 (613)
T ss_pred CCCCCCCCCCCCHHHHEEEEEEECCCCHHHH-HHCCCCCCCCCCCCEEEECCCCCEEEEEEEEEEEEECHHHHHCCCCCC
T ss_conf 0122322445786671678986357422134-406875557998304874167622678889998753635641274216
Q ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC--------------------CCCCCCCEECCCCCC
Q ss_conf 352689999975102332222222245179999998614443411--------------------575321100111354
Q gi|254780761|r 232 NSLEQALQLLQLSQKTAGSMLTAFELISNFILKLVVKHIPNTFSP--------------------LSDTSPWYILLEISS 291 (473)
Q Consensus 232 ~~~~~a~~~~~~~~~~~~~~~~aiel~d~~~~~~~~~~~~~~~~~--------------------~~~~~~~~lli~~~g 291 (473)
++|+.++.|++++..+. -.|++++||||.++..-....|...+. ...-....+++|..-
T Consensus 351 PNFEqGV~f~REvA~qR-CqPAS~RLMDN~QF~fGqALKp~~~Swwas~~d~~kk~YiTswKGfd~nqicaATllfEGdr 429 (613)
T KOG1233 351 PNFEQGVNFFREVAIQR-CQPASLRLMDNDQFVFGQALKPASDSWWASLKDSVKKMYITSWKGFDVNQICAATLLFEGDR 429 (613)
T ss_pred CCHHHHHHHHHHHHHHH-CCCHHEEEECCCCEECCCCCCCCHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHEECCCH
T ss_conf 86788889999999973-68300463326411100025733013799999887651240014767756536451032668
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH-----HHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 306899999999888863134565310015888896-----443310012211222356644442100131289999999
Q gi|254780761|r 292 TETLERAQNIANTILATGFNKKILTEWILPSLDEEK-----NAIWCLRNNIPLAQKREGRSIKHDISVPIGQIPSFLQEV 366 (473)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~lw~~R~~~~~~~~~~g~~~~~Dvavp~~~l~~~~~~v 366 (473)
.+.. +-++....+.++ +..-.... ..-++ ..+..+|. +.++..-..-.+++++||++...+.+.+
T Consensus 430 e~V~-qhE~~~y~iAek-F~G~~aG~-----~NGqrGY~LTfvIAYiRD---lgl~~gvlgESFETSvPWDrv~~LCRnV 499 (613)
T KOG1233 430 EEVD-QHEERLYKIAEK-FHGVVAGA-----ENGQRGYRLTFVIAYIRD---LGLNHGVLGESFETSVPWDRVLSLCRNV 499 (613)
T ss_pred HHHH-HHHHHHHHHHHH-HCCCCCCC-----CCCCCCEEEEEEHHHHHH---HCCCCCCHHHCCCCCCCHHHHHHHHHHH
T ss_conf 9999-899999999998-57965555-----466442588770998886---2110010010112468789999999879
Q ss_pred HHHHHHHCCC-------CEEEEEEEECC--CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHH
Q ss_conf 9998863487-------22899998449--86999984277888068999999999999999999818918997355565
Q gi|254780761|r 367 KKSVSSIFPK-------TRIGLFGHIGD--GNIHFNVFPPTDENQDEFLSLHWNTINNIVYSVVLSYGGSIAAEHGIGQL 437 (473)
Q Consensus 367 ~~~l~~~~~~-------~~~~~~gH~g~--g~lh~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gG~is~eHGiG~~ 437 (473)
++++...... ..-+.+...+| .|+||.+-.....-.+. ...++++...+.+.++..|||+|||||||++
T Consensus 500 Ker~~rEck~~gv~~~~~s~CRVTQtYDAGACiYFYFgFn~rg~~dp--levfe~iE~aARdEIlacGGSlSHHHGVGKi 577 (613)
T KOG1233 500 KERMKRECKAQGVTHPVLSNCRVTQTYDAGACIYFYFGFNARGLKDP--LEVFERIETAARDEILACGGSLSHHHGVGKI 577 (613)
T ss_pred HHHHHHHHHHCCCCCCCCCCEEEEEEECCCEEEEEEEEECCCCCCCH--HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
T ss_conf 99999999865777543234057777438627999973034567865--8899988777677898638752002450089
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 688888731789999999998871537778887649
Q gi|254780761|r 438 HKKRLEGILEPTEIKIMKKIKEIFDPAGIMNPGKFL 473 (473)
Q Consensus 438 k~~~~~~~~~~~~~~~l~~iK~~~DP~gilNPGkli 473 (473)
|+.||....+...+.+++++|..+||+|||.-++||
T Consensus 578 RkqW~~~~~~~vG~~llka~K~~lDP~NIFa~~NLl 613 (613)
T KOG1233 578 RKQWMLTTNGAVGIALLKAIKSELDPANIFASANLL 613 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCC
T ss_conf 899998500267699999998746866511203469
No 7
>KOG1231 consensus
Probab=100.00 E-value=0 Score=443.49 Aligned_cols=446 Identities=17% Similarity=0.237 Sum_probs=336.4
Q ss_pred HHHHHHCC---CCCEECCHHHHHHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHC--CCCEEEECCCCCCCCCCEE
Q ss_conf 99997338---441866989987731340136766875899549989999999999872--9829997588777654010
Q gi|254780761|r 10 QRFISIVG---SEGILDDQKLISPYLTEERKIYHGTSPLVLLPSCTHEVSQILKLATET--NTSITPQGGNTGLVGGQIP 84 (473)
Q Consensus 10 ~~l~~i~g---~~~v~~d~~~~~~~~~d~~~~~~~~p~~Vv~P~~~~ev~~iv~~a~~~--~i~v~prGggt~~~G~~~p 84 (473)
..+..+|| +..+.+|+.....-++|+...++..|.+|++|+|+|||++++|+|+++ ++||+|||+|||+.||+.+
T Consensus 28 ~~~~~~l~~~~~~~~~~~~~~~a~~s~dFg~~~~~~P~aVL~P~S~edVs~ilk~~~~~~s~~pVaarG~GhSl~Gqa~a 107 (505)
T KOG1231 28 ESLKKILGNSLEGTLESDPSSVAHASTDFGNRTQLPPLAVLFPSSVEDVSKILKHCNDYGSNFPVAARGGGHSLEGQALA 107 (505)
T ss_pred CCHHHHCCCCCCCEEECCCHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCC
T ss_conf 30666627653551523614543201330655778971687478789999999998626776326304786532575235
Q ss_pred CCCCCEEEEECC-CCCCCCCCCCCCCEEEECCCCCHHHHHHHCCCCCC--CCCCCCCCCCCCCCHHHHHCCCCCCHHHHC
Q ss_conf 488866999763-00277421123734551144200222210012322--234433432111311222123564000112
Q gi|254780761|r 85 RKNRKDIILSIK-RMNRIRDIDLRSNTIAVDAGINLFNVQKIAEKNHR--LFPLSLPSEKYCHIGGNLATNAGGTAVLSY 161 (473)
Q Consensus 85 ~~~~~~vvld~~-~mn~il~id~~~~~v~veaGv~~~~l~~~l~~~g~--~~p~~p~s~~~aTvGG~ia~~~~G~~s~~y 161 (473)
..+..-|-+|++ .|+++-.+..++.+|.|+||..|.+|++++.++|+ ++|.|| ..+||||++||.++|..++||
T Consensus 108 ~~~GvvV~m~~~~~~~~~~~~~~~~~yvdV~~g~~Widll~~t~e~GL~p~swtDy---l~ltVGGtlsnagiggqafRy 184 (505)
T KOG1231 108 TRGGVVVCMDSSLLMKDVPVLVVDDLYVDVSAGTLWIDLLDYTLEYGLSPFSWTDY---LPLTVGGTLSNAGIGGQAFRY 184 (505)
T ss_pred CCCCEEEEEEHHHCCCCCCEEECCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCC---CCEEECCEECCCCCCCCEEEC
T ss_conf 78976999840102678732441462478407800899999999739886676786---320223164167546530442
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCC---CCCCCCCC-CCCCHHHH
Q ss_conf 573334443323466653021122013322322233322346545431012799404675---44321000-01352689
Q gi|254780761|r 162 GNIRHLCLGIEAVLPTGDIWNGMHKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYR---TGKQVAFI-AVNSLEQA 237 (473)
Q Consensus 162 G~~~d~v~~~~vv~~~G~i~~~~~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p---~~~~~~~~-~f~~~~~a 237 (473)
|+..+||+.|+||||+|||++|..+ +|++|..+|+||+|+|||||+|+++|.|.| ..+..... .|+..+.+
T Consensus 185 Gpqi~NV~~LdVVtgkGeiv~cs~r-----~n~~lf~~vlGglGqfGIITrArI~le~aP~~dQe~lis~~~~fd~veg~ 259 (505)
T KOG1231 185 GPQISNVIELDVVTGKGEIVTCSKR-----ANSNLFFLVLGGLGQFGIITRARIKLEPAPKRDQERLISVCGSFDTVEGA 259 (505)
T ss_pred CCHHHCEEEEEEECCCCCEEECCCC-----CCCEEEEEEECCCCCEEEEEEEEEEECCCCCCCHHHHHHHHCCCCCHHHH
T ss_conf 6501144788998179758963310-----48401001313675101588899973158862567764544587522120
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC-----CCCCCCCCEECCCCCCCC-HHHHHHHHHHHHHHHHCC
Q ss_conf 99997510233222222224517999999861444341-----157532110011135430-689999999988886313
Q gi|254780761|r 238 LQLLQLSQKTAGSMLTAFELISNFILKLVVKHIPNTFS-----PLSDTSPWYILLEISSTE-TLERAQNIANTILATGFN 311 (473)
Q Consensus 238 ~~~~~~~~~~~~~~~~aiel~d~~~~~~~~~~~~~~~~-----~~~~~~~~~lli~~~g~~-~~~~~~~~~~~~~~~~~~ 311 (473)
+...+... ..+++.+.+++.|...++.....-...++ .........+..++.+.. ....+.- ..+......
T Consensus 260 ~~~~~~gl-~~n~r~s~f~l~D~~~i~~~~~~~~~~yclev~ky~d~~e~pti~~e~~~l~~~l~~~~~--~~~~~~v~y 336 (505)
T KOG1231 260 AIVARNGL-QSNIRVSRFELLDEVQIAAINSDHSTNYCLEVAKYYDLTEAPTLFQEIGGLSEKLNYAPT--FIVEQDVQY 336 (505)
T ss_pred HHHHHCCC-CCCCEEECCCCCCHHHHHHHHHCCCEEEEEEHHHCCCCCCCCHHHHHHHCCCHHHHCCCH--HHHHHHHHH
T ss_conf 00002035-356322003657688999877247735543102205864474188887321055522640--566666677
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC------CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf 456531001588889644331001221122235------66444421001312899999999998863487228999984
Q gi|254780761|r 312 KKILTEWILPSLDEEKNAIWCLRNNIPLAQKRE------GRSIKHDISVPIGQIPSFLQEVKKSVSSIFPKTRIGLFGHI 385 (473)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~lw~~R~~~~~~~~~~------g~~~~~Dvavp~~~l~~~~~~v~~~l~~~~~~~~~~~~gH~ 385 (473)
...+.....+.++.....+|..|+.+.-+..+. .+.+..|+++|.++.+.++...++.++. ...-..+.+|+
T Consensus 337 ~~fldrv~~ae~klrskgLWevphpWlnL~vpks~i~~fa~gv~~dIl~~~s~g~~liyptnk~~kw--~~~~sav~ph~ 414 (505)
T KOG1231 337 HDFLDRVHFAEDKLRSKGLWEVPHPWLNLAVPKSRISDFARGVFTDILVPNSSGPVLIYPTNKDLKW--SNRLSAVTPHA 414 (505)
T ss_pred HHHHHHHHHCCCCHHHCCCCCCCCCHHEEECCCCCCHHHHHHHCCCEEECCCCCCEEEECCCCCCCH--HHHHCCCCCCC
T ss_conf 7766676531263211353337872510335554211454443012330168886688525567145--65430324657
Q ss_pred CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC
Q ss_conf 49869999842778880689999999999999999998189189973555656888887317899999999988715377
Q gi|254780761|r 386 GDGNIHFNVFPPTDENQDEFLSLHWNTINNIVYSVVLSYGGSIAAEHGIGQLHKKRLEGILEPTEIKIMKKIKEIFDPAG 465 (473)
Q Consensus 386 g~g~lh~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gG~is~eHGiG~~k~~~~~~~~~~~~~~~l~~iK~~~DP~g 465 (473)
++|++|...+.... ..++ ....+..++.+.+-+++. |+.++|||+|..+++|+.+.+|+...+.|+ +|.+|||+.
T Consensus 415 ~e~vFy~v~~l~s~-~~~~--~e~~~~~n~riv~fc~~a-g~~~keyl~~~~~~e~w~~hfG~~w~~f~~-~K~~~DPk~ 489 (505)
T KOG1231 415 GEGVFYLVILLRSS-GKEE--HEELEQLNDRIVKFCLAA-GTCTKEYLPHYGKREYWVEHFGEKWVDFMR-IKKAYDPKR 489 (505)
T ss_pred CCCEEEEEEEECCC-CCHH--HHHHHHHHHHHHHHHHHC-CCCHHHHCCCCCCHHHHHHHHCHHHHHHHH-HHHHCCHHH
T ss_conf 88627999996578-8066--899999999999999972-857112057756189999885742889998-886169877
Q ss_pred CCCCCCCC
Q ss_conf 78887649
Q gi|254780761|r 466 IMNPGKFL 473 (473)
Q Consensus 466 ilNPGkli 473 (473)
||||||.|
T Consensus 490 Il~PGq~I 497 (505)
T KOG1231 490 ILNPGQRI 497 (505)
T ss_pred HCCCCCCC
T ss_conf 35975424
No 8
>pfam02913 FAD-oxidase_C FAD linked oxidases, C-terminal domain. This domain has a ferredoxin-like fold.
Probab=100.00 E-value=0 Score=308.01 Aligned_cols=243 Identities=24% Similarity=0.416 Sum_probs=197.2
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCHHHHHH
Q ss_conf 75443210000135268999997510233222222224517999999861444341157532110011135430689999
Q gi|254780761|r 220 YRTGKQVAFIAVNSLEQALQLLQLSQKTAGSMLTAFELISNFILKLVVKHIPNTFSPLSDTSPWYILLEISSTETLERAQ 299 (473)
Q Consensus 220 ~p~~~~~~~~~f~~~~~a~~~~~~~~~~~~~~~~aiel~d~~~~~~~~~~~~~~~~~~~~~~~~~lli~~~g~~~~~~~~ 299 (473)
+|+.+.+.++.|+|+++|+++++.+.+. +..|+++|+||+..++++.++.+. +++....+++++++.+.+......
T Consensus 1 lP~~~~~~~~~f~~~~~A~~a~~~~~~~-g~~psa~ElmD~~~~~~~~~~~~~---~~~~~~~~~llve~~g~~~~~~~~ 76 (247)
T pfam02913 1 LPEAVAVAVVGFPSFEAAAAAVRALRSS-GIIPAALELMDKAALDLVLATLGL---GLPRDAPAYLLVEFEGNDEEVVEE 76 (247)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHC-CCCEEEEEEECHHHHHHHHHHCCC---CCCCCCCEEEEEEECCCCHHHHHH
T ss_conf 9847389999899999999999999967-998699973899999999862599---999887759999977887668999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCC----CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999888863134565310015888896443310012211222----356644442100131289999999999886348
Q gi|254780761|r 300 NIANTILATGFNKKILTEWILPSLDEEKNAIWCLRNNIPLAQK----REGRSIKHDISVPIGQIPSFLQEVKKSVSSIFP 375 (473)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lw~~R~~~~~~~~----~~g~~~~~Dvavp~~~l~~~~~~v~~~l~~~~~ 375 (473)
.... .+...+......+...+.++.+.+++|..|+..+.+.. ..+..+.+|++|||++++++++.+++.+++.
T Consensus 77 ~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~lW~~R~~~~~~~~~~~~~~~~~~~~D~aVP~~~l~~~~~~~~~~~~~~-- 153 (247)
T pfam02913 77 RLEA-AVEAILEGAGAGDVVVAQDEAEAERLWRARKYAMPLRDALGGAGPLVFTEDVSVPWSRLPDLVADIKELLAKY-- 153 (247)
T ss_pred HHHH-HHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECHHHHHHHHHHHHHHHHHC--
T ss_conf 9999-9999986289844897089999999999986489999986157985257778755999999999999999973--
Q ss_pred CCEEEEEEEECCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHCCHHHHHHHH
Q ss_conf 72289999844986999984277888068999999999999999999818918997355565688888731789999999
Q gi|254780761|r 376 KTRIGLFGHIGDGNIHFNVFPPTDENQDEFLSLHWNTINNIVYSVVLSYGGSIAAEHGIGQLHKKRLEGILEPTEIKIMK 455 (473)
Q Consensus 376 ~~~~~~~gH~g~g~lh~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gG~is~eHGiG~~k~~~~~~~~~~~~~~~l~ 455 (473)
...+.+|||+||||+|++++.+... ++. ...+.++.+.+++.++++|||+|||||||+.|++|+..++++..+++|+
T Consensus 154 ~~~~~~~gH~gdGnlH~~~~~~~~~--~~~-~~~~~~~~~~i~~~v~~~GGsiS~EHGiG~~k~~~l~~~~g~~~~~lm~ 230 (247)
T pfam02913 154 GLVVCHFGHVGDGNLHLYILFDAKD--PEE-EERAEALFDELADLAAALGGSISGEHGVGLDKKPYLEEEFGPEGLALMR 230 (247)
T ss_pred CCCEEEEEEECCCCEEEEEECCCCC--HHH-HHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHCHHHHHHHH
T ss_conf 9726876056389469998308898--899-9999999889999999769858774868730178899862999999999
Q ss_pred HHHHHHCCCCCCCCCCC
Q ss_conf 99887153777888764
Q gi|254780761|r 456 KIKEIFDPAGIMNPGKF 472 (473)
Q Consensus 456 ~iK~~~DP~gilNPGkl 472 (473)
+||++|||+|||||||+
T Consensus 231 ~iK~a~DP~~IlNPGKi 247 (247)
T pfam02913 231 RIKAAFDPNNILNPGKV 247 (247)
T ss_pred HHHHHHCCCCCCCCCCC
T ss_conf 99998497867899999
No 9
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=100.00 E-value=8.9e-36 Score=244.00 Aligned_cols=434 Identities=21% Similarity=0.297 Sum_probs=286.9
Q ss_pred CHHHHHHHHHHCCCCCEECCHHHHHHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEE
Q ss_conf 98999999973384418669899877313401367668758995499899999999998729829997588777654010
Q gi|254780761|r 5 SLDLIQRFISIVGSEGILDDQKLISPYLTEERKIYHGTSPLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIP 84 (473)
Q Consensus 5 ~~~~~~~l~~i~g~~~v~~d~~~~~~~~~d~~~~~~~~p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p 84 (473)
+++++++|++|||..+|+|++....+|.+.|++ -++.+.+||+|+|--|+.++++.|.+++.-|+++++.||++||+.|
T Consensus 3 ~~~li~~l~~ivG~~~vlt~~~~t~~y~~G~R~-G~G~alaVv~P~tL~e~W~vl~~cv~~~~iiimQAaNTGLTgGStP 81 (565)
T PRK11183 3 NKALINELKRIVGHSHVLTDPAKTERYRKGFRS-GQGDALAVVFPGTLLELWRVLQACVEADKIIIMQAANTGLTGGSTP 81 (565)
T ss_pred HHHHHHHHHHHHCCCCEECCHHHCCCHHCCEEC-CCCCEEEEECCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCC
T ss_conf 379999999870845151474431001123011-6861789976852999999999999669489973556688888899
Q ss_pred C---CCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCHHHHHHHCCCCCCCCCCCC--CCCCCCCCHHHHHCCCCCCHHH
Q ss_conf 4---8886699976300277421123734551144200222210012322234433--4321113112221235640001
Q gi|254780761|r 85 R---KNRKDIILSIKRMNRIRDIDLRSNTIAVDAGINLFNVQKIAEKNHRLFPLSL--PSEKYCHIGGNLATNAGGTAVL 159 (473)
Q Consensus 85 ~---~~~~~vvld~~~mn~il~id~~~~~v~veaGv~~~~l~~~l~~~g~~~p~~p--~s~~~aTvGG~ia~~~~G~~s~ 159 (473)
. +++.-|||++.|||+|.-|| +..+|.+-||.++.+|++.|++.|+. ||+. ||.--|||=|-|.+||+|...-
T Consensus 82 ~g~dYDR~iviint~r~~~i~li~-~g~qvv~lpG~tL~~Le~~L~p~~Re-pHSviGSscigasv~gGvcnnSGGalv~ 159 (565)
T PRK11183 82 NGNDYDRDIVIISTLRLDKIQLLN-NGKQVLCLPGTTLYQLEKALKPLGRE-PHSVIGSSCIGASVIGGICNNSGGALVQ 159 (565)
T ss_pred CCCCCCCCEEEEECCCCCCEEECC-CCCEEEECCCCCHHHHHHHHHHCCCC-CCHHHCCCCCCCHHEEEEECCCCCCEEE
T ss_conf 988888887999714326468826-88779982897799999986651899-8311043433652012245488652130
Q ss_pred HCCCCCCCCCCCCCCCCCCCC-----------------EEE--------------EEE------------CCCCC-C--C
Q ss_conf 125733344433234666530-----------------211--------------220------------13322-3--2
Q gi|254780761|r 160 SYGNIRHLCLGIEAVLPTGDI-----------------WNG--------------MHK------------LIKDN-S--R 193 (473)
Q Consensus 160 ~yG~~~d~v~~~~vv~~~G~i-----------------~~~--------------~~~------------~~~~~-~--G 193 (473)
-|+...-..=.--|..+|++ +.. ..+ +..+. + .
T Consensus 160 -rGPAyTelaLya~v~~~g~l~LvNhLgI~lG~~Peeil~~l~~~~~~~~di~~~~~~asd~~Y~~~VRdvda~tPaRfN 238 (565)
T PRK11183 160 -RGPAYTEMALYAQIDEDGELELVNHLGIDLGETPEEILTNLQNGRYKDEDVRHDGRHASDHEYAERVRDVDADTPARFN 238 (565)
T ss_pred -CCCCHHHHHHHHEECCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCCHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCC
T ss_conf -3750455467642478983898752486458997999988753898710157764457657899998437999954456
Q ss_pred CCCCCCC--CCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 2233322--34654543101279940467544321000013526899999751023322222222451799999986144
Q gi|254780761|r 194 YDIRDLL--IGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQKTAGSMLTAFELISNFILKLVVKHIP 271 (473)
Q Consensus 194 ~dl~~l~--~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~~~~~~~~~aiel~d~~~~~~~~~~~~ 271 (473)
-|-++|+ -||.|-+.|+ .|.|.++|+|+..+++.+.+++.+...++=+.+...-...|.+-|+|.+..++.+.++-+
T Consensus 239 AD~rrL~eaSGsAGKlaVF-AVRlDTfp~~~~~qVFYiGtNd~~~l~~iRR~iL~~f~~LPisgEYmHRd~fDia~kYGK 317 (565)
T PRK11183 239 ADPRRLFEASGCAGKLAVF-AVRLDTFPAEKNTQVFYIGTNDPDVLTEIRRHILTNFKNLPIAGEYMHRDAFDIAEKYGK 317 (565)
T ss_pred CCCCCCCCCCCCCCCEEEE-EEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 8822033345777635899-996046678876438998279879999999999850743767675642677678988540
Q ss_pred CCCCC----------------------------C---------------------------CCCCCCEECCCCCCCCHHH
Q ss_conf 43411----------------------------5---------------------------7532110011135430689
Q gi|254780761|r 272 NTFSP----------------------------L---------------------------SDTSPWYILLEISSTETLE 296 (473)
Q Consensus 272 ~~~~~----------------------------~---------------------------~~~~~~~lli~~~g~~~~~ 296 (473)
+.+-. + .+.....+++..++.. .+
T Consensus 318 Dtfl~I~~lGT~~lP~lF~lK~~vD~~~~kl~flp~~~sDr~mQ~~s~l~P~hLPkRm~~yR~~yEHHLiLkms~~g-i~ 396 (565)
T PRK11183 318 DTFLMIDKLGTDKLPKLFALKGRVDAFLEKVPFLPPHFTDRVMQAFSHLFPSHLPKRMKDYRDKYEHHLLLKMSGDG-IA 396 (565)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCHHHCCHHHHHHHHHHHEEEEEEECCCC-HH
T ss_conf 17578987581277899988999999998566778884799999998758132569999998652424899955553-89
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC--------CCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99999998888631345653100158888964433100122112--------2235664444210013128999999999
Q gi|254780761|r 297 RAQNIANTILATGFNKKILTEWILPSLDEEKNAIWCLRNNIPLA--------QKREGRSIKHDISVPIGQIPSFLQEVKK 368 (473)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lw~~R~~~~~~--------~~~~g~~~~~Dvavp~~~l~~~~~~v~~ 368 (473)
.+..++...... . ..+++.++..+.+..+ -.|-.+..+ .+..+..+..|+|.|... .+..+.+-.
T Consensus 397 Ear~~L~~~F~~----~-~G~fFeCt~~EgkkA~-LHRFaaAgAa~RY~avh~~~vedilaLDIALrRNd-~~WfE~LP~ 469 (565)
T PRK11183 397 EARAYLKEYFAQ----A-EGDFFECTPEEGKKAF-LHRFAAAGAAIRYRAVHRDEVEDILALDIALRRND-RDWFEHLPP 469 (565)
T ss_pred HHHHHHHHHHHC----C-CCCEEECCHHHHHHHH-HHHHHHCCHHHHHHHHHCCCCCCEEEEEEEECCCC-HHHHHHCCH
T ss_conf 999999998610----4-7998961878889998-88877422278899970245476678987622774-006676889
Q ss_pred HHHHHCCCCEEEEEEEECCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHCCH
Q ss_conf 98863487228999984498699998427788806899999999999999999981891899735556568888873178
Q gi|254780761|r 369 SVSSIFPKTRIGLFGHIGDGNIHFNVFPPTDENQDEFLSLHWNTINNIVYSVVLSYGGSIAAEHGIGQLHKKRLEGILEP 448 (473)
Q Consensus 369 ~l~~~~~~~~~~~~gH~g~g~lh~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gG~is~eHGiG~~k~~~~~~~~~~ 448 (473)
.++... .. -..|||+.+..+|-.+......+. .++++.+.++.-+-|+-.-+||.||.+.. -.+
T Consensus 470 ei~~~i-~~-klyYGHFfCHVfHQDYIvKKGvD~--------~~lK~~ml~lld~RGAeYPAEHNVGHlY~------Ak~ 533 (565)
T PRK11183 470 EIDDQL-VH-KLYYGHFMCHVFHQDYIVKKGVDV--------HALKHQMLELLDARGAEYPAEHNVGHLYK------AKP 533 (565)
T ss_pred HHHHHH-HH-EEEECCHHHHHHHHHHHHHCCCCH--------HHHHHHHHHHHHHCCCCCCCCCCCCCCCC------CCH
T ss_conf 776442-30-264213211020475554158898--------99999999999860776874236775110------887
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999999988715377788876
Q gi|254780761|r 449 TEIKIMKKIKEIFDPAGIMNPGK 471 (473)
Q Consensus 449 ~~~~~l~~iK~~~DP~gilNPGk 471 (473)
-|++.=+.+||.|.||||-
T Consensus 534 ----~L~~fY~~lDPTNsfNPGI 552 (565)
T PRK11183 534 ----ALKKFYRELDPTNSFNPGI 552 (565)
T ss_pred ----HHHHHHHHCCCCCCCCCCC
T ss_conf ----8999997369866778876
No 10
>pfam01565 FAD_binding_4 FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyses the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidizes the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan.
Probab=100.00 E-value=1.1e-34 Score=237.25 Aligned_cols=137 Identities=30% Similarity=0.478 Sum_probs=131.3
Q ss_pred CCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCHHHH
Q ss_conf 75899549989999999999872982999758877765401048886699976300277421123734551144200222
Q gi|254780761|r 43 SPLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDIDLRSNTIAVDAGINLFNV 122 (473)
Q Consensus 43 p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~~~~vvld~~~mn~il~id~~~~~v~veaGv~~~~l 122 (473)
|.+||+|+|++||+++|++|+++++|+++||+|||..|++. .++|+|||++||+|+++|+++++++||||++|.+|
T Consensus 1 P~~vv~P~s~~ev~~~v~~a~~~~~~v~~~g~G~~~~~~~~----~~gi~i~l~~~~~i~~~d~~~~~v~v~aG~~~~~l 76 (138)
T pfam01565 1 PAAVVRPESEEEVAAIVRLANEHGLPVLVRGGGSSLLGDAV----TGGVVLDLSRLNGILEIDPENGTATVEAGVTLGDL 76 (138)
T ss_pred CCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCEECCCCCC----CCEEEEECCCCCCCEEEECCCCEEEEECCCCHHHH
T ss_conf 98999909999999999999986996899889667279863----99599995689972688538848999578099999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 2100123222344334321113112221235640001125733344433234666530211
Q gi|254780761|r 123 QKIAEKNHRLFPLSLPSEKYCHIGGNLATNAGGTAVLSYGNIRHLCLGIEAVLPTGDIWNG 183 (473)
Q Consensus 123 ~~~l~~~g~~~p~~p~s~~~aTvGG~ia~~~~G~~s~~yG~~~d~v~~~~vv~~~G~i~~~ 183 (473)
.++|.++|+++|++|.+...+||||++++|+.|.++.+||.++|+|+++|+|+|||++++.
T Consensus 77 ~~~l~~~g~~~~~~~~~~~~~tvGG~i~~~~~G~~~~~~G~~~d~v~~~~vV~~~G~iv~~ 137 (138)
T pfam01565 77 VRALAAKGLLLGLEPGSGIPGTVGGAIATNGGGYGSEKYGLTRDNVLSLEVVLADGEVVRL 137 (138)
T ss_pred HHHHHHCCCEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCHHHEEEEEEEECCCCCEEEE
T ss_conf 9999972998863167667620312124896556745646488748999999689719994
No 11
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase; InterPro: IPR010030 This entry identifies a family of uncharacterised plant-specific FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (1.3.2.3 from EC) from higher plants, D-arabinono-1,4-lactone oxidase (1.1.3.37 from EC) from Saccharomyces cerevisiae, and L-gulonolactone oxidase (1.1.3.8 from EC) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown..
Probab=99.97 E-value=1.9e-29 Score=204.31 Aligned_cols=405 Identities=18% Similarity=0.303 Sum_probs=227.5
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCC-CCCCCCEECCCCC----EEEEECCCCCCCCCCCCCCCEEEEC
Q ss_conf 6687589954998999999999987298299975887-7765401048886----6999763002774211237345511
Q gi|254780761|r 40 HGTSPLVLLPSCTHEVSQILKLATETNTSITPQGGNT-GLVGGQIPRKNRK----DIILSIKRMNRIRDIDLRSNTIAVD 114 (473)
Q Consensus 40 ~~~p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt-~~~G~~~p~~~~~----~vvld~~~mn~il~id~~~~~v~ve 114 (473)
...+.+|++|.|+|||+++|+.|.+++.+|=.-..=+ ++.-=+-|-.+.. +++|+++|+|++++||++.+|||||
T Consensus 36 tC~aAav~YP~tE~dlv~~VA~A~~~g~k~kv~t~ySHsIpkLaCpG~Gs~G~as~LlIST~~ln~vv~vdA~~~tvTvd 115 (577)
T TIGR01677 36 TCRAAAVAYPKTEEDLVKVVADATAKGLKVKVVTRYSHSIPKLACPGDGSDGEASALLISTKRLNRVVAVDAEAMTVTVD 115 (577)
T ss_pred CCCHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEECCCCCCCCHHHHHHHHHHHCCEEEECCCCEEEEEC
T ss_conf 46421144876768999999999846893589812314466401568888610234433255618647870331267630
Q ss_pred CCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHCCC---CCCCCCCCCCCCCCCCCEEEEEECC--C
Q ss_conf 4420022221001232223443343211131122212356400011257---3334443323466653021122013--3
Q gi|254780761|r 115 AGINLFNVQKIAEKNHRLFPLSLPSEKYCHIGGNLATNAGGTAVLSYGN---IRHLCLGIEAVLPTGDIWNGMHKLI--K 189 (473)
Q Consensus 115 aGv~~~~l~~~l~~~g~~~p~~p~s~~~aTvGG~ia~~~~G~~s~~yG~---~~d~v~~~~vv~~~G~i~~~~~~~~--~ 189 (473)
+|++|.+|-+..++.|+-+|..| -++--||||+|+|+|-| |-++|. ..|||.+|++|.|-+. -++..|+. +
T Consensus 116 SG~~LR~lI~~a~~~GlaL~~AP-YWeGlsvGGl~sTGaHG--SSlwGkGsAVHdyVv~~rlV~PA~~-~dGfAKv~~L~ 191 (577)
T TIGR01677 116 SGVSLRELIEEAEKAGLALPYAP-YWEGLSVGGLLSTGAHG--SSLWGKGSAVHDYVVGIRLVVPASA-ADGFAKVVVLE 191 (577)
T ss_pred CCCCHHHHHHHHHHCCCCCCCCC-CCCCCEECCCCCCCCCC--CCCCCCCCCEEEEEEEEEEECCCCC-CCCEEEEEEEC
T ss_conf 48767899999864464346786-40340224300157433--2322689732225776674136887-77536777705
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCC---HHHHHHHHHHHCCCCCCC----CC---CCCCCC
Q ss_conf 22322233322346545431012799404675443210000135---268999997510233222----22---222451
Q gi|254780761|r 190 DNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNS---LEQALQLLQLSQKTAGSM----LT---AFELIS 259 (473)
Q Consensus 190 ~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~---~~~a~~~~~~~~~~~~~~----~~---aiel~d 259 (473)
++.-+.+.....=|-|.||||.+|||.|.|+- ++...+.|.| |+|- +++.-.+++... |+ ++--+|
T Consensus 192 ~~~~d~~lnAakVSLGvLGVIS~VtL~L~p~F--KRSvtY~~r~D~~l~D~--~~~fG~~hEFADi~WyPS~~~aVYR~D 267 (577)
T TIGR01677 192 EGDDDALLNAAKVSLGVLGVISKVTLALEPLF--KRSVTYEFRDDSDLEDQ--FVKFGKKHEFADITWYPSQGKAVYRVD 267 (577)
T ss_pred CCCCCHHHHHHHHHHHHCCEEEEEEEEECCCC--CCEEEEECCCCCHHHHH--HHHHHHHCCCCCEEECCCCCEEEEEEE
T ss_conf 78583256566555100201335664316774--52032202576057889--999743143431232488971788751
Q ss_pred H-HHHHHHHHHCCCCCCCCCCCCC-CEECCCC--------------CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 7-9999998614443411575321-1001113--------------5430689999999988886313456531001588
Q gi|254780761|r 260 N-FILKLVVKHIPNTFSPLSDTSP-WYILLEI--------------SSTETLERAQNIANTILATGFNKKILTEWILPSL 323 (473)
Q Consensus 260 ~-~~~~~~~~~~~~~~~~~~~~~~-~~lli~~--------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (473)
. ..++..- +....+-+... ..+++.. .|.+...............++... ...+.+.+
T Consensus 268 dR~p~N~sG----~Gv~DFlGF~S~l~~~~~~~R~~E~~~E~~~n~nGKC~~A~~~~A~~~~~gyGL~~~--~G~lFTGY 341 (577)
T TIGR01677 268 DRLPVNASG----NGVNDFLGFRSTLILVIKGIRALEEAFERSRNANGKCVTAAVTLAAKKLVGYGLKNA--GGLLFTGY 341 (577)
T ss_pred CCCCCCCCC----CCHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCC--CCCEECCC
T ss_conf 660013325----831005655210899999998888989984478983016789999874004661258--88305365
Q ss_pred HHH--HHHH-------HHHC----CCCCCCCCCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEE-------
Q ss_conf 889--6443-------3100----122112223566444--42100131289999999999886348722899-------
Q gi|254780761|r 324 DEE--KNAI-------WCLR----NNIPLAQKREGRSIK--HDISVPIGQIPSFLQEVKKSVSSIFPKTRIGL------- 381 (473)
Q Consensus 324 ~~~--~~~l-------w~~R----~~~~~~~~~~g~~~~--~Dvavp~~~l~~~~~~v~~~l~~~~~~~~~~~------- 381 (473)
+-- ++++ .... -.-++--|.+|..+- |-+++|.+|+.+|+.+|+++ .+.-|+.-+++
T Consensus 342 PVvG~Q~~mq~SGSC~~S~~~~~~~ACaWDpR~~Gl~Fy~~Ta~~~P~sr~~~Fv~dvk~L-rd~~p~~LCGvd~Y~GiL 420 (577)
T TIGR01677 342 PVVGSQGRMQTSGSCLRSPEDALLTACAWDPRYKGLFFYEQTALFVPVSRFRDFVLDVKRL-RDMEPKSLCGVDLYNGIL 420 (577)
T ss_pred CCCCCCCCEECCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHH-CCCCCCCCCCCEEECCEE
T ss_conf 1114686432242356777635156268777767651123465621167766789887764-168812014313007637
Q ss_pred --E-----EEECC-----C----E--EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH-HHCCCEEEECCCCHHHHHH-
Q ss_conf --9-----98449-----8----6--999984277888068999999999999999999-8189189973555656888-
Q gi|254780761|r 382 --F-----GHIGD-----G----N--IHFNVFPPTDENQDEFLSLHWNTINNIVYSVVL-SYGGSIAAEHGIGQLHKKR- 441 (473)
Q Consensus 382 --~-----gH~g~-----g----~--lh~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~gG~is~eHGiG~~k~~~- 441 (473)
| +|+|. | . +=||++-..|+..+. .++.+.++|.+++. |||+.. | .||.|.-=
T Consensus 421 iRyvkaS~AYLG~PaaGGGq~~d~v~~D~~YYRA~D~~~pR----L~~Dv~EEiEQ~A~~KygA~P---H-WGKNR~~AF 492 (577)
T TIGR01677 421 IRYVKASKAYLGKPAAGGGQEEDAVVFDFTYYRAKDPLTPR----LYEDVLEEIEQMAFVKYGALP---H-WGKNRNLAF 492 (577)
T ss_pred EEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCC----HHHHHHHHHHHHHHHHCCCCC---C-HHHHHHHHH
T ss_conf 99871542326774788788656488511244158777866----135589988865620128866---4-244323432
Q ss_pred --HHHHCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf --887317899999999988715377788
Q gi|254780761|r 442 --LEGILEPTEIKIMKKIKEIFDPAGIMN 468 (473)
Q Consensus 442 --~~~~~~~~~~~~l~~iK~~~DP~gilN 468 (473)
..+-|||. +.-+-++|+.+||+|+|.
T Consensus 493 ~Gv~~KyGp~-~~~FL~vK~~lDP~gLFs 520 (577)
T TIGR01677 493 VGVKRKYGPN-IDKFLKVKDKLDPKGLFS 520 (577)
T ss_pred HCCHHCCCCC-HHHHHHHHHHCCCCCCCC
T ss_conf 1001014787-115899864307675778
No 12
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase; InterPro: IPR010032 This entry identifies a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (1.1.3.8 from EC) from rat and D-arabinono-1,4-lactone oxidase (1.1.3.37 from EC) from Saccharomyces cerevisiae..
Probab=99.94 E-value=3.7e-25 Score=177.34 Aligned_cols=394 Identities=18% Similarity=0.240 Sum_probs=233.1
Q ss_pred CCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCCCEEEE
Q ss_conf 40136766875899549989999999999872982999758877765401048886699976300277421123734551
Q gi|254780761|r 34 EERKIYHGTSPLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDIDLRSNTIAV 113 (473)
Q Consensus 34 d~~~~~~~~p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~~~~vvld~~~mn~il~id~~~~~v~v 113 (473)
.|++.....|.+++.|.++.|++++|+.|.+-+=-|-+.|+|+|.+- .....|++|||.+|.+|+.+|+....|+|
T Consensus 3 NWsG~~~a~P~ai~~P~degELad~~~~A~~pGervR~VGsGHSFT~----la~tdGt~~sl~~l~g~v~~d~~~~~a~V 78 (426)
T TIGR01679 3 NWSGVQVAEPSAIVAPKDEGELADVVKVAAKPGERVRAVGSGHSFTD----LAKTDGTLVSLEKLEGVVDVDQQKDEAIV 78 (426)
T ss_pred CCCCCEECCCCEECCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCC----CCCCCCEEEECCCCCEEEEECCCCCEEEE
T ss_conf 78964452720011788601489999972388976654437765013----33668657873116504300289886899
Q ss_pred CCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC
Q ss_conf 14420022221001232223443343211131122212356400011257333444332346665302112201332232
Q gi|254780761|r 114 DAGINLFNVQKIAEKNHRLFPLSLPSEKYCHIGGNLATNAGGTAVLSYGNIRHLCLGIEAVLPTGDIWNGMHKLIKDNSR 193 (473)
Q Consensus 114 eaGv~~~~l~~~l~~~g~~~p~~p~s~~~aTvGG~ia~~~~G~~s~~yG~~~d~v~~~~vv~~~G~i~~~~~~~~~~~~G 193 (473)
++|+++.-|-..|+..|+-++= .+-...-+|||.++|=--|++ .+.+...-.|.++++|+|.|+|+.. ..+..
T Consensus 79 ~aGtrLgaLgp~La~~g~gL~N-~gDid~QsigGAlgTATHGtG-~~~~a~h~~~~~lrlVt~~Gkv~d~-----~~~~d 151 (426)
T TIGR01679 79 KAGTRLGALGPLLAEKGRGLEN-LGDIDKQSIGGALGTATHGTG-VKLQALHARVVSLRLVTASGKVLDL-----SEADD 151 (426)
T ss_pred ECCCCCCCHHHHHHHHCCCCCC-CCCCCHHHHHHHHHHCCCCCC-CCCCCCCEEEEEEEEECCCCCEEEC-----CCCCC
T ss_conf 5065214045899975145667-788660132111010215788-6333542067899998588707875-----56878
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEEECCCCC-CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC----CHHHHHHHHH
Q ss_conf 22333223465454310127994046754-432100001352689999975102332222222245----1799999986
Q gi|254780761|r 194 YDIRDLLIGSEGTLGIITGAVLRLLPYRT-GKQVAFIAVNSLEQALQLLQLSQKTAGSMLTAFELI----SNFILKLVVK 268 (473)
Q Consensus 194 ~dl~~l~~GseGtlGiITevtlrl~p~p~-~~~~~~~~f~~~~~a~~~~~~~~~~~~~~~~aiel~----d~~~~~~~~~ 268 (473)
+|+.+..-=|-|.||||.+|||+..|... +++...- .++++++-+....... ...||+ ...++..+..
T Consensus 152 ~~~~~AarVslGAlGViSqVtl~t~a~~rLrRr~w~~---p~~~~l~~~d~~~~~h----r~fEFy~~Pf~g~A~~it~d 224 (426)
T TIGR01679 152 QDIYLAARVSLGALGVISQVTLRTVALFRLRRRKWLR---PLEEALEKLDEFVDAH----RSFEFYVVPFAGKALTITSD 224 (426)
T ss_pred HHHHHHHHHHHHHHCHHHEEEECCCCCCCHHHHHHHH---HHHHHHHHHHHHHHCC----CCCCEEEECCCCHHHHHHCC
T ss_conf 7799999888643010100110125452000277755---6999999998887425----77206861442103553113
Q ss_pred HCCCCCCCCCCCCCCEECCCCCCCCHHHHH-HHHHHHHHHHHCCCCCCCCCCC--CCCHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 144434115753211001113543068999-9999988886313456531001--5888896443310012211222356
Q gi|254780761|r 269 HIPNTFSPLSDTSPWYILLEISSTETLERA-QNIANTILATGFNKKILTEWIL--PSLDEEKNAIWCLRNNIPLAQKREG 345 (473)
Q Consensus 269 ~~~~~~~~~~~~~~~~lli~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~lw~~R~~~~~~~~~~g 345 (473)
...+.-.+.|+... -.+.+.+++. ..++....-.-.-...+....+ .+.+.....-|.+ ++..|.-
T Consensus 225 ~sde~~~~tPGr~~------d~de~fln~~Lr~lr~~l~~~pslr~rl~~~~~~~~~se~~vd~~~kv-----~at~R~v 293 (426)
T TIGR01679 225 ESDEAAKATPGRQR------DDDEEFLNRALRLLRQTLAFLPSLRKRLAKALVAKVKSEDVVDEAYKV-----FATERKV 293 (426)
T ss_pred CCCCCCCCCCCCCC------CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHH-----HHCCCCC
T ss_conf 66788888887887------665203578899998631025708999999987507851145534664-----3126873
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEE--EEEECCC----------EEEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 644442100131289999999999886348722899--9984498----------6999984277888068999999999
Q gi|254780761|r 346 RSIKHDISVPIGQIPSFLQEVKKSVSSIFPKTRIGL--FGHIGDG----------NIHFNVFPPTDENQDEFLSLHWNTI 413 (473)
Q Consensus 346 ~~~~~Dvavp~~~l~~~~~~v~~~l~~~~~~~~~~~--~gH~g~g----------~lh~~~~~~~~~~~~~~~~~~~~~i 413 (473)
+.-.+|..+|.++-.+.+++|.+.+++.++.+--.+ -.-+-|- .+++-+ ..+-..| +..+
T Consensus 294 rFnEMEyhlP~Eng~kAL~evi~l~e~r~p~v~FPiEVR~~ApDd~wLSpfY~rptcsiAv--H~ya~~d------f~~~ 365 (426)
T TIGR01679 294 RFNEMEYHLPVENGRKALEEVIELVEKRSPEVYFPIEVRSVAPDDAWLSPFYARPTCSIAV--HQYAASD------FESY 365 (426)
T ss_pred CCCCCCEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEE--ECHHCCC------HHHH
T ss_conf 3230000078645478999999998533887215502300157732136243769531775--1200358------1689
Q ss_pred HHHHHHHHHHHCCCEEEECCCCHHHH---HHHHHHCCHHHHHHHHHHHHHHCCCCCC-CCC
Q ss_conf 99999999981891899735556568---8888731789999999998871537778-887
Q gi|254780761|r 414 NNIVYSVVLSYGGSIAAEHGIGQLHK---KRLEGILEPTEIKIMKKIKEIFDPAGIM-NPG 470 (473)
Q Consensus 414 ~~~~~~~~~~~gG~is~eHGiG~~k~---~~~~~~~~~~~~~~l~~iK~~~DP~gil-NPG 470 (473)
.+.+..+..+|+|-. | .||.|. ..+++.|.. ++-+-++++.+||++.| ||.
T Consensus 366 ~~a~EpIfrrY~GRP---H-WGK~H~l~aa~l~~~YPr--Wddf~aVR~dlDP~~rflnpY 420 (426)
T TIGR01679 366 FRAVEPIFRRYEGRP---H-WGKLHSLKAADLKELYPR--WDDFLAVRDDLDPDRRFLNPY 420 (426)
T ss_pred HHHHHHHHHHCCCCC---C-CCCCCCHHHHHHHHHCCC--HHHHHHHHHHCCCCCHHHCHH
T ss_conf 999989986357888---6-251113114679763785--047999843248240020426
No 13
>KOG4730 consensus
Probab=99.93 E-value=1e-25 Score=180.86 Aligned_cols=182 Identities=19% Similarity=0.228 Sum_probs=144.6
Q ss_pred CCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCHHHH
Q ss_conf 75899549989999999999872982999758877765401048886699976300277421123734551144200222
Q gi|254780761|r 43 SPLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDIDLRSNTIAVDAGINLFNV 122 (473)
Q Consensus 43 p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~~~~vvld~~~mn~il~id~~~~~v~veaGv~~~~l 122 (473)
+.-|-+|.|++|+.++|+.|++++..+.+.|.|.|..+=+.+ .|.+|++++||+++++|++.+++|||+|+++.+|
T Consensus 50 aanv~yP~teaeL~~lVa~A~~a~~kirvVg~gHSp~~l~ct----dg~lisl~~lnkVv~~dpe~~tvTV~aGirlrQL 125 (518)
T KOG4730 50 AANVNYPKTEAELVELVAAATEAGKKIRVVGSGHSPSKLVCT----DGLLISLDKLNKVVEFDPELKTVTVQAGIRLRQL 125 (518)
T ss_pred HCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCEEC----CCCEEEHHHHCCCEEECCHHCEEEECCCCCHHHH
T ss_conf 204689987999999999998748658985156787763304----6547776663231254730204771208289999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 21001232223443343211131122212356400011257333444332346665302112201332232223332234
Q gi|254780761|r 123 QKIAEKNHRLFPLSLPSEKYCHIGGNLATNAGGTAVLSYGNIRHLCLGIEAVLPTGDIWNGMHKLIKDNSRYDIRDLLIG 202 (473)
Q Consensus 123 ~~~l~~~g~~~p~~p~s~~~aTvGG~ia~~~~G~~s~~yG~~~d~v~~~~vv~~~G~i~~~~~~~~~~~~G~dl~~l~~G 202 (473)
.+.+++.||.+|..| |+.--||||+|+|++-|..-..++...+....+.++.++|.+.. ..+..-|++.++..-
T Consensus 126 ie~~~~~GlsL~~~~-si~e~sVgGii~TGaHGSS~~vH~~v~~i~~v~~~~~~~G~v~~-----Ls~e~dpe~F~AAkv 199 (518)
T KOG4730 126 IEELAKLGLSLPNAP-SISEQSVGGIISTGAHGSSLWVHDYVSEIISVSPITPADGFVVV-----LSEEKDPELFNAAKV 199 (518)
T ss_pred HHHHHHCCCCCCCCC-CEECCEEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCEEEE-----ECCCCCHHHHHHHHH
T ss_conf 999986484556777-32021451277336688866437542226897430257823898-----016689888766561
Q ss_pred CCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHH
Q ss_conf 6545431012799404675443210000135268
Q gi|254780761|r 203 SEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQ 236 (473)
Q Consensus 203 seGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~ 236 (473)
|-|-||||.++||++.|.-+...+. .+-+.++
T Consensus 200 SLG~LGVIs~VTl~~vp~Fk~s~t~--~v~n~~d 231 (518)
T KOG4730 200 SLGVLGVISQVTLSVVPAFKRSLTY--VVTNDSD 231 (518)
T ss_pred CCCCEEEEEEEEEEEEECCEEEEEE--EEECHHH
T ss_conf 4552268999999987430003678--9721688
No 14
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases; InterPro: IPR010031 This entry identifies a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesising ascorbic acid or a derivative. These include L-gulonolactone oxidase (1.1.3.8 from EC) from rat and D-arabinono-1,4-lactone oxidase (1.1.3.37 from EC) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by IPR006093 from INTERPRO.; GO: 0016899 oxidoreductase activity acting on the CH-OH group of donors oxygen as acceptor, 0009058 biosynthetic process.
Probab=99.91 E-value=1.6e-24 Score=173.25 Aligned_cols=196 Identities=21% Similarity=0.329 Sum_probs=158.4
Q ss_pred CCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCC----CC
Q ss_conf 40136766875899549989999999999872982999758877765401048886699976300277421123----73
Q gi|254780761|r 34 EERKIYHGTSPLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDIDLR----SN 109 (473)
Q Consensus 34 d~~~~~~~~p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~~~~vvld~~~mn~il~id~~----~~ 109 (473)
.|..+|...|..--.|.|+|||.+||+.|++++=.|...|||+|=+-=++ ..+=+|+|.|||||+.+|++ ..
T Consensus 6 NWAk~ysa~pe~y~qP~s~eevrE~l~~Ar~~~Kk~~vVG~GHSPSdi~c----Tdg~l~~ldkmnkV~~fd~~Pelh~~ 81 (505)
T TIGR01678 6 NWAKTYSAKPEVYYQPKSVEEVREVLADAREAEKKVKVVGAGHSPSDIVC----TDGFLVSLDKMNKVLKFDKEPELHKK 81 (505)
T ss_pred EECCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCEE----CCCHHEECCCCCCEEEECCCCCCCCC
T ss_conf 31310102535544897299999999998746983899757778232154----26021001224510155278663220
Q ss_pred EEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 45511442002222100123222344334321113112221235640001125733344433234666530211220133
Q gi|254780761|r 110 TIAVDAGINLFNVQKIAEKNHRLFPLSLPSEKYCHIGGNLATNAGGTAVLSYGNIRHLCLGIEAVLPTGDIWNGMHKLIK 189 (473)
Q Consensus 110 ~v~veaGv~~~~l~~~l~~~g~~~p~~p~s~~~aTvGG~ia~~~~G~~s~~yG~~~d~v~~~~vv~~~G~i~~~~~~~~~ 189 (473)
.||||||+++.||++.|..+||-++. ..|..-.||.|.|+|.+-|. |.++|-+..++.+|+++++||||+++...
T Consensus 82 ~iTV~AGirlyql~e~L~~~Gys~~~-lGsiSe~sVaGiistgtHgs-s~~Hg~l~~q~v~lti~~adGe~~~cs~e--- 156 (505)
T TIGR01678 82 DITVEAGIRLYQLQEILDEKGYSLSN-LGSISEVSVAGIISTGTHGS-SLKHGVLASQVVALTIMLADGEVLECSEE--- 156 (505)
T ss_pred CEEHHHHHHHHHHHHHHHHCCCCEEC-CCCCCCCEECCEEECCCCCC-CCCCCHHHHEEEEEEEEECCCCEEEECCC---
T ss_conf 11165525686645897524871000-22100431211550374687-65333244033334567047757860220---
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 22322233322346545431012799404675443210000135268999997
Q gi|254780761|r 190 DNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQ 242 (473)
Q Consensus 190 ~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~ 242 (473)
..+|+.+...=|-|.||||..+||+++|.-.-+.+..+. .+++.++-+.
T Consensus 157 --~~~dvF~AA~vslG~lGiIv~~Ti~vVP~F~l~~T~~v~--T~~~ll~~wd 205 (505)
T TIGR01678 157 --RDKDVFKAARVSLGALGIIVDVTIRVVPAFDLKETEEVS--TLKELLKDWD 205 (505)
T ss_pred --CCHHHHHHHHHCCCCEEEEEEEEEEEECCCCCCCCCCCC--CHHHHHHHHC
T ss_conf --485688898641562478999988873365552577641--0899987620
No 15
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.78 E-value=3.2e-18 Score=133.80 Aligned_cols=196 Identities=20% Similarity=0.339 Sum_probs=150.9
Q ss_pred CCHHHHHHHHHHCCCCCEECCHHHHHHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCE
Q ss_conf 89899999997338441866989987731340136766875899549989999999999872982999758877765401
Q gi|254780761|r 4 LSLDLIQRFISIVGSEGILDDQKLISPYLTEERKIYHGTSPLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQI 83 (473)
Q Consensus 4 ~~~~~~~~l~~i~g~~~v~~d~~~~~~~~~d~~~~~~~~p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~ 83 (473)
++.+++++|+++++.++|..|. .+..|++ ....+.+.+.+.|.+.+|+.+++++|+++++|+.+-|+|||+. +
T Consensus 2 ~~~~~~~~l~~~~p~~ki~~n~-~Ls~~tt---~~iGG~A~~~~~p~~~~~l~~~~~~~~~~~ip~~vlG~GSNlL---v 74 (307)
T PRK13906 2 INKDIYQALQQLIPNEKIKVDE-PLKRYTY---TKTGGNADFYITPTKNEEVQAVVKYAYQNEIPVTYLGNGSNII---I 74 (307)
T ss_pred CCHHHHHHHHHHCCCCCEECCC-CCCCCCE---EEECCEEEEEEEECCHHHHHHHHHHHHHCCCCEEEECCCEEEE---E
T ss_conf 6189999999867846467288-5665644---1278097899964999999999998987699789982706998---9
Q ss_pred ECCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHCCC
Q ss_conf 04888669997630027742112373455114420022221001232223443343211131122212356400011257
Q gi|254780761|r 84 PRKNRKDIILSIKRMNRIRDIDLRSNTIAVDAGINLFNVQKIAEKNHRLFPLSLPSEKYCHIGGNLATNAGGTAVLSYGN 163 (473)
Q Consensus 84 p~~~~~~vvld~~~mn~il~id~~~~~v~veaGv~~~~l~~~l~~~g~~~p~~p~s~~~aTvGG~ia~~~~G~~s~~yG~ 163 (473)
...+-.|+|+.+..++.+ ++ .+..++|+||+.|.+|..++.++|+. +..+-+.--.||||.+.+|++. ||.
T Consensus 75 ~D~g~~GiVI~l~~~~~i-~~--~~~~v~~~AG~~~~~l~~~~~~~gl~-GlE~l~gIPGTvGGAi~mNaGa-----yG~ 145 (307)
T PRK13906 75 REGGIRGIVISLLSLDHI-EV--SDDAIIAGSGAAIIDVSRVARDYALT-GLEFACGIPGSIGGAVYMNAGA-----YGG 145 (307)
T ss_pred ECCCCCEEEEEECCCCEE-EE--ECCEEEEEECCCHHHHHHHHHHCCCC-CCHHHCCCCCCHHHHHHCCCCC-----CCC
T ss_conf 669803289995565539-96--09979998168189999999986986-3033337883366775403897-----873
Q ss_pred -CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCC
Q ss_conf -3334443323466653021122013322322233322346545431012799404675
Q gi|254780761|r 164 -IRHLCLGIEAVLPTGDIWNGMHKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYR 221 (473)
Q Consensus 164 -~~d~v~~~~vv~~~G~i~~~~~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p 221 (473)
+.|.|.+++++..+|++.+.. ++..++.-++-.+-.+ .-||++++++|.|..
T Consensus 146 ei~d~i~~v~~~d~~g~~~~l~----~~e~~f~YR~S~f~~~--~~iIl~a~f~l~~~~ 198 (307)
T PRK13906 146 EVKDCIDYALCVNEQGSLIKLT----TKELELDYRNSIIQKE--HLVVLEAAFTLAPGK 198 (307)
T ss_pred CCEEEEEEEEEECCCCEEEEEE----CCCCEECCCCCCCCCC--CCEEEEEEEEECCCC
T ss_conf 1133899999995898299985----4311122466766768--826999999865799
No 16
>KOG1262 consensus
Probab=99.72 E-value=3.4e-18 Score=133.57 Aligned_cols=146 Identities=20% Similarity=0.327 Sum_probs=115.3
Q ss_pred EEECCCCCCCCCCCCCCCEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHCCCCCCCCCCC
Q ss_conf 99763002774211237345511442002222100123222344334321113112221235640001125733344433
Q gi|254780761|r 92 ILSIKRMNRIRDIDLRSNTIAVDAGINLFNVQKIAEKNHRLFPLSLPSEKYCHIGGNLATNAGGTAVLSYGNIRHLCLGI 171 (473)
Q Consensus 92 vld~~~mn~il~id~~~~~v~veaGv~~~~l~~~l~~~g~~~p~~p~s~~~aTvGG~ia~~~~G~~s~~yG~~~d~v~~~ 171 (473)
-+++..+-.||++|.+++||+|||+|+..++.++|-+.|+++|+-| -..-.||||.|.--+--..|.+||..-+.+.+.
T Consensus 105 ~v~id~l~dILeld~ekmtvrvEP~Vtmgqis~~lip~g~tLaV~~-EldDlTvGGLinG~Gies~ShkyGlfq~~~~aY 183 (543)
T KOG1262 105 QVPIDELHDILELDEEKMTVRVEPLVTMGQISKFLIPKGYTLAVLP-ELDDLTVGGLINGVGIESSSHKYGLFQHICTAY 183 (543)
T ss_pred CCCHHHHHHHHHCCHHCCEEEECCCCCHHHHHHHHCCCCCEEEEEC-CCCCCEECCEEEECCCCCCCCHHHHHHHHHHEE
T ss_conf 0778887677760320026983487659888777524773143112-346512323332012224540225588654205
Q ss_pred CCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 23466653021122013322322233322346545431012799404675443210000135268999997
Q gi|254780761|r 172 EAVLPTGDIWNGMHKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQ 242 (473)
Q Consensus 172 ~vv~~~G~i~~~~~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~ 242 (473)
|+|++||++++.- .++..-||.=.+-=|+||||+...+|+|+.|..+-....+++....++-.+-+.
T Consensus 184 EvVladGelv~~t----~dne~sdLfyaiPWSqGTlgfLVaatiriIkvK~Yvkltyip~~~l~e~c~k~~ 250 (543)
T KOG1262 184 EVVLADGELVRVT----PDNEHSDLFYAIPWSQGTLGFLVAATIRIIKVKKYVKLTYIPVHGLDEYCKKIT 250 (543)
T ss_pred EEEECCCEEEEEC----CCCCCCCEEEECCCCCCCHHEEEEEEEEEEECCCEEEEEEEECCCHHHHHHHHH
T ss_conf 8996287289832----786667327974544671200333178899632217999885266999999987
No 17
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.67 E-value=8.7e-16 Score=118.48 Aligned_cols=193 Identities=18% Similarity=0.289 Sum_probs=146.1
Q ss_pred HHHHHHHHHHCCCCCEECCHHHHHHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEC
Q ss_conf 89999999733844186698998773134013676687589954998999999999987298299975887776540104
Q gi|254780761|r 6 LDLIQRFISIVGSEGILDDQKLISPYLTEERKIYHGTSPLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPR 85 (473)
Q Consensus 6 ~~~~~~l~~i~g~~~v~~d~~~~~~~~~d~~~~~~~~p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~ 85 (473)
+++.+.|++.+++..|..|. .+..|.+ ....+.+...+.|.|.+|+.+++++|+++++|+..-|+|||+ .++.
T Consensus 4 ~~~~~~l~~~~~~g~i~~n~-~L~~~tt---~~IGG~A~~~~~~~~~~~L~~~~~~~~~~~~p~~vlG~GSNl---L~~D 76 (305)
T PRK12436 4 QEVYEYLSTVLPEGHVKQDE-MLKNHTH---IKVGGKADVFVAPTNYDEIQEVIKYANKYNIPVTFLGNGSNV---IIKD 76 (305)
T ss_pred HHHHHHHHHHCCCCCEEECC-CCCCCCC---CCCCEEEEEEEEECCHHHHHHHHHHHHHCCCCEEEECCCEEE---EEEC
T ss_conf 89999999767788467088-2665665---344808649998699999999999888769977998272589---7856
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHCCC-C
Q ss_conf 888669997630027742112373455114420022221001232223443343211131122212356400011257-3
Q gi|254780761|r 86 KNRKDIILSIKRMNRIRDIDLRSNTIAVDAGINLFNVQKIAEKNHRLFPLSLPSEKYCHIGGNLATNAGGTAVLSYGN-I 164 (473)
Q Consensus 86 ~~~~~vvld~~~mn~il~id~~~~~v~veaGv~~~~l~~~l~~~g~~~p~~p~s~~~aTvGG~ia~~~~G~~s~~yG~-~ 164 (473)
.+-.|++|.+.++++| ++ ++..++|++|+.|.+|.+++..+|+. +.+.-+.--.||||.+.+|++. ||. +
T Consensus 77 ~g~~G~vI~l~~~~~i-~~--~~~~i~a~aG~~~~~l~~~a~~~gl~-GlE~l~gIPGTVGGA~~mNaGa-----yG~ei 147 (305)
T PRK12436 77 GGIRGITVSLIHITGV-TV--TGTTIVAQCGAAIIDVSRIALDHNLT-GLEFACGIPGSVGGALYMNAGA-----YGGEI 147 (305)
T ss_pred CCCCCEEEEEEEECEE-EE--CCCEEEEEECCCHHHHHHHHHHCCCC-CCHHHCCCCCCHHHHHHCCCCC-----CCCCC
T ss_conf 9806469997532106-85--39989998388689999999986986-3132327884355674135899-----97553
Q ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC
Q ss_conf 33444332346665302112201332232223332234654543101279940467
Q gi|254780761|r 165 RHLCLGIEAVLPTGDIWNGMHKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPY 220 (473)
Q Consensus 165 ~d~v~~~~vv~~~G~i~~~~~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~ 220 (473)
.|.+.+++++..+|++.+.. ++...++-++-.... . --||+++++++.+.
T Consensus 148 ~~~l~~v~~~~~~g~~~~~~----~~e~~F~YR~S~f~~-~-~~iIl~~~f~l~~~ 197 (305)
T PRK12436 148 SFVLTEAVVMTGDGELRTLT----KEAFEFGYRKSVFAN-N-HYIILEARFELEEG 197 (305)
T ss_pred EEEEEEEEEECCCCCEEEEC----HHHCCCCCCCCCCCC-C-CEEEEEEEEEECCC
T ss_conf 15899999980787389976----899175645676778-8-73899999953679
No 18
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.59 E-value=1e-14 Score=111.82 Aligned_cols=174 Identities=20% Similarity=0.341 Sum_probs=127.7
Q ss_pred HHHHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCCCEEEEECCC-CCCCCCCC
Q ss_conf 98773134013676687589954998999999999987298299975887776540104888669997630-02774211
Q gi|254780761|r 27 LISPYLTEERKIYHGTSPLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKR-MNRIRDID 105 (473)
Q Consensus 27 ~~~~~~~d~~~~~~~~p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~~~~vvld~~~-mn~il~id 105 (473)
.+..|.+ ....+.+...+.|.|.+|+.+++++|.++++|+..-|+|||+. ++..+-.|+||-+++ ++.| ++
T Consensus 18 ~Ls~~tt---~~iGG~A~~~~~~~~~~~L~~~l~~~~~~~~p~~vlG~GSNlL---~~D~g~~G~VI~l~~~~~~i-~~- 89 (298)
T PRK13905 18 PLARYTW---FKVGGPADYLFEPADIEDLAAFLKFLKENNIPVTVIGNGSNLL---VRDGGIRGVVIRLGKGLNEI-EV- 89 (298)
T ss_pred CCCCCCC---CCCCCEEEEEEEECCHHHHHHHHHHHHHCCCCEEEECCCEEEE---EECCCEEEEEEEECCCCCEE-EE-
T ss_conf 3665515---1208287899986999999999997887699889992704897---81698622899953762579-98-
Q ss_pred CCCCEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHCCC-CCCCCCCCCCCCCCCCCEEEE
Q ss_conf 2373455114420022221001232223443343211131122212356400011257-333444332346665302112
Q gi|254780761|r 106 LRSNTIAVDAGINLFNVQKIAEKNHRLFPLSLPSEKYCHIGGNLATNAGGTAVLSYGN-IRHLCLGIEAVLPTGDIWNGM 184 (473)
Q Consensus 106 ~~~~~v~veaGv~~~~l~~~l~~~g~~~p~~p~s~~~aTvGG~ia~~~~G~~s~~yG~-~~d~v~~~~vv~~~G~i~~~~ 184 (473)
++.+++|+||+.|.+|-+++.++|+. +.+.-+.--.||||.+.+|++ -||. +.|.|.+++++..+|++.+..
T Consensus 90 -~~~~v~v~AG~~~~~lv~~~~~~gl~-GlE~l~gIPGTvGgA~~mNaG-----ayG~ei~d~l~~V~~~d~~g~~~~~~ 162 (298)
T PRK13905 90 -EGDTVRAGAGAPLIKLARFAAEAGLS-GLEFAAGIPGSVGGAVFMNAG-----AYGGETADVLVSVEVLDRDGEIKTLS 162 (298)
T ss_pred -CCCEEEEEECCCHHHHHHHHHHCCCC-CEEEEEECCCCHHHHHHCCCC-----CCHHHHHHEEEEEEEECCCCCEEEEE
T ss_conf -29999998289889999999985998-639997058467789761489-----77356666114489996999899987
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCC
Q ss_conf 2013322322233322346545431012799404675
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYR 221 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p 221 (473)
++..++.-++-..-.+ --||++++|+|.+..
T Consensus 163 ----~~e~~f~YR~S~f~~~--~~iIl~~~f~l~~~~ 193 (298)
T PRK13905 163 ----NEELGFGYRHSALQEK--GLIVLSATFRLEPGD 193 (298)
T ss_pred ----HHHCCCCCCCCCCCCC--CCEEEEEEEEEECCC
T ss_conf ----4780513344677889--947999999952399
No 19
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.59 E-value=2.8e-14 Score=109.04 Aligned_cols=174 Identities=19% Similarity=0.281 Sum_probs=131.2
Q ss_pred HHHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 87731340136766875899549989999999999872982999758877765401048886699976300277421123
Q gi|254780761|r 28 ISPYLTEERKIYHGTSPLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDIDLR 107 (473)
Q Consensus 28 ~~~~~~d~~~~~~~~p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~~~~vvld~~~mn~il~id~~ 107 (473)
+..|++ ....+.+...+.|++.+|+.+++++|.++++|+..-|+|||+. +-..+-++++|.+.+++.+ +++.+
T Consensus 9 L~~~tt---friGg~A~~~~~~~~~e~l~~~~~~~~~~~~p~~ilG~GSNlL---v~d~g~~gvvi~~~~~~~~-~~~~~ 81 (291)
T COG0812 9 LKRYTT---FRIGGPAEVLVEPRDIEELKAALKYAKAEDLPVLILGGGSNLL---VRDGGIGGVVIKLGKLNFI-EIEGD 81 (291)
T ss_pred CCCCEE---EECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCEEE---EECCCCCEEEEECCCCCCE-EEECC
T ss_conf 666336---7628540279814899999999986442599879995671489---9549976699980456622-45056
Q ss_pred CCEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHCCC-CCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 73455114420022221001232223443343211131122212356400011257-33344433234666530211220
Q gi|254780761|r 108 SNTIAVDAGINLFNVQKIAEKNHRLFPLSLPSEKYCHIGGNLATNAGGTAVLSYGN-IRHLCLGIEAVLPTGDIWNGMHK 186 (473)
Q Consensus 108 ~~~v~veaGv~~~~l~~~l~~~g~~~p~~p~s~~~aTvGG~ia~~~~G~~s~~yG~-~~d~v~~~~vv~~~G~i~~~~~~ 186 (473)
+.+++|++|+.|.+|-+.+.++|+. +.+.-+.--.||||.+-+|++ -||. +.|.+.+++++..+|++.+.
T Consensus 82 ~~~i~a~aG~~~~~l~~~~~~~gl~-GlE~l~gIPGsvGgav~mNaG-----AyG~Ei~d~~~~v~~ld~~G~~~~l--- 152 (291)
T COG0812 82 DGLIEAGAGAPWHDLVRFALENGLS-GLEFLAGIPGSVGGAVIMNAG-----AYGVEISDVLVSVEVLDRDGEVRWL--- 152 (291)
T ss_pred CCEEEECCCCCHHHHHHHHHHCCCC-HHHHHCCCCCCCCHHHHCCCC-----CCCCCHHEEEEEEEEECCCCCEEEE---
T ss_conf 7869990389679999999975972-147661799541205530386-----2541012118999999689979998---
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC
Q ss_conf 1332232223332234654543101279940467
Q gi|254780761|r 187 LIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPY 220 (473)
Q Consensus 187 ~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~ 220 (473)
.++..++.-++=.+-.+. .||++|+++|.|-
T Consensus 153 -~~~el~f~YR~S~f~~~~--~vvl~v~f~L~~~ 183 (291)
T COG0812 153 -SAEELGFGYRTSPFKKEY--LVVLSVEFKLTKG 183 (291)
T ss_pred -EHHHHCCCCCCCCCCCCC--EEEEEEEEEECCC
T ss_conf -889909645667678788--7999999987789
No 20
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.56 E-value=3.4e-14 Score=108.50 Aligned_cols=187 Identities=16% Similarity=0.175 Sum_probs=133.9
Q ss_pred HHHCCCCCEECCHHHHHHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCCCEEE
Q ss_conf 97338441866989987731340136766875899549989999999999872982999758877765401048886699
Q gi|254780761|r 13 ISIVGSEGILDDQKLISPYLTEERKIYHGTSPLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDII 92 (473)
Q Consensus 13 ~~i~g~~~v~~d~~~~~~~~~d~~~~~~~~p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~~~~vv 92 (473)
-.++....|..| ..+..|.+ ....+.+.+.+.|.|++|+.+++++|+++++|+..-|+|||+. ++..+-.++|
T Consensus 7 ~~~~~~~~I~~n-v~L~~~tt---~~iGG~A~~~~~p~~~~eL~~~l~~~~~~~~p~~ilG~GSNlL---~~D~g~~g~V 79 (359)
T PRK13903 7 GSLFAGAEVAED-VPLAPLTT---LRVGGPARRLVTCTTTEQLVAAVRALDAAGEPLLVLGGGSNLV---IADDGFDLTV 79 (359)
T ss_pred HHHCCCCEEECC-CCCCCCCC---CCCCCEEEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCEEEE---EECCCCCEEE
T ss_conf 653788777679-84776605---4328280399973999999999998887699889980622698---8069864499
Q ss_pred EECCCCCCCCCCCCCCCEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHCCC-CCCCCCCC
Q ss_conf 97630027742112373455114420022221001232223443343211131122212356400011257-33344433
Q gi|254780761|r 93 LSIKRMNRIRDIDLRSNTIAVDAGINLFNVQKIAEKNHRLFPLSLPSEKYCHIGGNLATNAGGTAVLSYGN-IRHLCLGI 171 (473)
Q Consensus 93 ld~~~mn~il~id~~~~~v~veaGv~~~~l~~~l~~~g~~~p~~p~s~~~aTvGG~ia~~~~G~~s~~yG~-~~d~v~~~ 171 (473)
|.+.. + .++.++.+++|+||+.|.+|-+++.++|+. +.+.-+.--.||||.+.+|++- ||. +.|.+.++
T Consensus 80 I~l~~-~---~i~~~~~~v~v~AG~~~~~lv~~~~~~gl~-GlE~LagIPGtVGgA~~mNaGA-----yG~Ei~d~l~~V 149 (359)
T PRK13903 80 VRIAT-S---GITLDGGLVRAEAGAVWDDVVARTVEAGLG-GLECLSGIPGSAGATPVQNVGA-----YGAEVSDTITRV 149 (359)
T ss_pred EEECC-C---CEEECCCEEEEEECCCHHHHHHHHHHCCCC-CEEHHHCCCCCCCHHHEECCCC-----CCCCHHHHEEEE
T ss_conf 99768-8---678669889998479689999999986985-1002305875402241355898-----876745511599
Q ss_pred CCCC-CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCC
Q ss_conf 2346-6653021122013322322233322346545431012799404675
Q gi|254780761|r 172 EAVL-PTGDIWNGMHKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYR 221 (473)
Q Consensus 172 ~vv~-~~G~i~~~~~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p 221 (473)
+++. .+|++.+.. ++...+.-++=..-.+ .-.||++++|+|.|..
T Consensus 150 ~~~d~~~g~~~~l~----~~e~~F~YR~S~fk~~-~~~iIl~v~f~L~~~~ 195 (359)
T PRK13903 150 RLLDRRTGEVRWVS----AAELGFGYRTSVLKHS-DRAVVLEVEFALDPDG 195 (359)
T ss_pred EEEECCCCCEEEEE----HHHCEEECCCCCCCCC-CCEEEEEEEEEECCCC
T ss_conf 99998999499972----5786042022555668-9689999999966676
No 21
>TIGR01676 GLDHase galactonolactone dehydrogenase; InterPro: IPR010029 This entry identifies L-galactono-gamma-lactone dehydrogenase 1.3.2.3 from EC. This enzyme performs the final step in ascorbic acid biosynthesis in higher plants. The protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD..
Probab=99.53 E-value=2.6e-15 Score=115.51 Aligned_cols=179 Identities=20% Similarity=0.288 Sum_probs=148.4
Q ss_pred CCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCCCEEEE
Q ss_conf 40136766875899549989999999999872982999758877765401048886699976300277421123734551
Q gi|254780761|r 34 EERKIYHGTSPLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDIDLRSNTIAV 113 (473)
Q Consensus 34 d~~~~~~~~p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~~~~vvld~~~mn~il~id~~~~~v~v 113 (473)
.|++.....-.....|.+.|++..||+-||+.+-.|-|.|+|-|-.|-.+...| +++|.-|++|+++|.+..+|+|
T Consensus 53 nWsGthev~tr~f~qPe~~e~le~~vk~anekk~r~rPvGsGlsPnGiGl~r~G----mvn~almd~vl~vd~ekk~v~v 128 (541)
T TIGR01676 53 NWSGTHEVLTRVFLQPEDLEELEQVVKTANEKKARVRPVGSGLSPNGIGLSRLG----MVNLALMDKVLEVDKEKKRVRV 128 (541)
T ss_pred CCCCCCEEEHEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHH----HHHHHHHHHHHHHHCCCCEEEE
T ss_conf 245530000000037156899999997544210111311367786553223567----8889988888753023457888
Q ss_pred CCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCC-CCCEEEEEECCCCCC
Q ss_conf 1442002222100123222344334321113112221235640001125733344433234666-530211220133223
Q gi|254780761|r 114 DAGINLFNVQKIAEKNHRLFPLSLPSEKYCHIGGNLATNAGGTAVLSYGNIRHLCLGIEAVLPT-GDIWNGMHKLIKDNS 192 (473)
Q Consensus 114 eaGv~~~~l~~~l~~~g~~~p~~p~s~~~aTvGG~ia~~~~G~~s~~yG~~~d~v~~~~vv~~~-G~i~~~~~~~~~~~~ 192 (473)
|||++.++|-+.++++|+++ ..+.|..-..|||.|-.++.|+++ +.-++.++|++|++|+|. |+| + ..+.-
T Consensus 129 qaGirvqqlvd~ikeyG~tl-qnfasireqqiGGi~qvGahGtGa-klPPideqvi~mklvtPakGti-e-----is~~k 200 (541)
T TIGR01676 129 QAGIRVQQLVDAIKEYGLTL-QNFASIREQQIGGIVQVGAHGTGA-KLPPIDEQVIAMKLVTPAKGTI-E-----ISKEK 200 (541)
T ss_pred EECCHHHHHHHHHHHHCCHH-HHHHHHHHHCCCCEEEECCCCCCC-CCCCCCCCEEEEEEECCCCCEE-E-----ECCCC
T ss_conf 40621668887788623035-555554331046468865545677-6886320014445413677506-6-----32678
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEEEECCCCCCC
Q ss_conf 22233322346545431012799404675443
Q gi|254780761|r 193 RYDIRDLLIGSEGTLGIITGAVLRLLPYRTGK 224 (473)
Q Consensus 193 G~dl~~l~~GseGtlGiITevtlrl~p~p~~~ 224 (473)
-|+|.-|.-+.-|-|||+.|+||.+....+-.
T Consensus 201 dPelf~larCGlGGlGvvaevtlqCverqelv 232 (541)
T TIGR01676 201 DPELFYLARCGLGGLGVVAEVTLQCVERQELV 232 (541)
T ss_pred CCCEEEEECCCCCCCCEEEEEHHHHHHHHHHH
T ss_conf 86445431027764410000001223235666
No 22
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.51 E-value=1.5e-13 Score=104.44 Aligned_cols=170 Identities=17% Similarity=0.183 Sum_probs=122.1
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCCCEEEEECCCC-CCCCCCCCCCCEEEECCCC
Q ss_conf 766875899549989999999999872982999758877765401048886699976300-2774211237345511442
Q gi|254780761|r 39 YHGTSPLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRM-NRIRDIDLRSNTIAVDAGI 117 (473)
Q Consensus 39 ~~~~p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~~~~vvld~~~m-n~il~id~~~~~v~veaGv 117 (473)
-.+.+...+.|+|.+|+.+++++|.++++|+..-|+|||+. ++.. -.|+|+-++.. -++.+.+.+..+++|+||+
T Consensus 17 iGG~A~~~~~p~~~~dL~~~~~~~~~~~~p~~ilG~GSNlL---~~d~-~~g~VI~~~~~~~~~~~~~~~~~~v~a~AG~ 92 (348)
T PRK00046 17 IDARARHLVEAESEEQLLAALADARAAGLPVLVLGGGSNVL---FTED-FDGTVLLNRIKGIEVVEDDDDAWYLEVGAGE 92 (348)
T ss_pred CCCEEEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCEEEE---ECCC-CCEEEEEECCCCCEEEEECCCEEEEEEECCC
T ss_conf 58086699975999999999998987799889991726897---8379-8548999768984788633980799995289
Q ss_pred CHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHCCC-CCCCCCCCCCC-CCCCCCEEEEEECCCCCCCCC
Q ss_conf 0022221001232223443343211131122212356400011257-33344433234-666530211220133223222
Q gi|254780761|r 118 NLFNVQKIAEKNHRLFPLSLPSEKYCHIGGNLATNAGGTAVLSYGN-IRHLCLGIEAV-LPTGDIWNGMHKLIKDNSRYD 195 (473)
Q Consensus 118 ~~~~l~~~l~~~g~~~p~~p~s~~~aTvGG~ia~~~~G~~s~~yG~-~~d~v~~~~vv-~~~G~i~~~~~~~~~~~~G~d 195 (473)
.|.+|-+++.++|+. +.+.-+.--.||||.+.+|++- ||. +.|.|.+++++ +++|++.+. .++...+.
T Consensus 93 ~~~~lv~~~~~~gl~-GlE~l~gIPGTVGGAv~mNaGa-----yG~ei~d~i~sV~~~d~~~g~~~~~----~~~e~~f~ 162 (348)
T PRK00046 93 NWHDLVEWTLQQGMP-GLENLALIPGTVGAAPIQNIGA-----YGVELKDVCDYVEALDLATGELVRL----TAAECRFG 162 (348)
T ss_pred CHHHHHHHHHHCCCC-CHHHHCCCCCCHHHHHHHCCCC-----CCCCHHHEEEEEEEEECCCCEEEEE----CHHHCCEE
T ss_conf 789999999986985-2054537882356687514875-----7767420075999999579719997----53460521
Q ss_pred CCC-CCCCCCCCCCCEEEEEEEECCCCC
Q ss_conf 333-223465454310127994046754
Q gi|254780761|r 196 IRD-LLIGSEGTLGIITGAVLRLLPYRT 222 (473)
Q Consensus 196 l~~-l~~GseGtlGiITevtlrl~p~p~ 222 (473)
-++ +|-.....--||++++++|.+.++
T Consensus 163 YR~S~fk~~~~~~~iI~sv~f~L~k~~~ 190 (348)
T PRK00046 163 YRDSIFKHEYPDRFAITAVGFRLPKRWQ 190 (348)
T ss_pred CCCHHHHCCCCCCEEEEEEEEEECCCCC
T ss_conf 1512441246898899999998667665
No 23
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=98.56 E-value=2.3e-07 Score=65.56 Aligned_cols=135 Identities=21% Similarity=0.208 Sum_probs=91.3
Q ss_pred HHHHHHCCCCEEEECCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf 99998729829997588777654010488866999763002774211237345511442002222100123222344334
Q gi|254780761|r 59 LKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDIDLRSNTIAVDAGINLFNVQKIAEKNHRLFPLSLP 138 (473)
Q Consensus 59 v~~a~~~~i~v~prGggt~~~G~~~p~~~~~~vvld~~~mn~il~id~~~~~v~veaGv~~~~l~~~l~~~g~~~p~~p~ 138 (473)
++.+.+...|+..-|+||++- +...+..++++ .+.++.| .+ ++.+++|+||+.|.+|-+++.++|+. +.++-
T Consensus 24 ~~~~~~~~~~~~ilG~GSNlL---v~D~g~~~vvl-~~~~~~i-~~--~~~~i~v~aG~~~~~l~~~a~~~gl~-GlEfl 95 (257)
T PRK13904 24 LEQIDDISQDGQLIGGANNLL---ISPNPKNLAIL-GKNFDYI-KI--DGEHLEIGGATKSSKIFNYAKKNNLG-GFEFL 95 (257)
T ss_pred HHHHHHHCCCEEEEECEEEEE---EECCCCCEEEE-CCCCCEE-EE--CCCEEEEEECCCHHHHHHHHHHCCCC-CCCEE
T ss_conf 553686199839990124899---97799358998-6886649-98--59999997178689999999987986-52110
Q ss_pred CCCCCCCHHHHHCCCCCCHHHHCC-CCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEE
Q ss_conf 321113112221235640001125-7333444332346665302112201332232223332234654543101279940
Q gi|254780761|r 139 SEKYCHIGGNLATNAGGTAVLSYG-NIRHLCLGIEAVLPTGDIWNGMHKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRL 217 (473)
Q Consensus 139 s~~~aTvGG~ia~~~~G~~s~~yG-~~~d~v~~~~vv~~~G~i~~~~~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl 217 (473)
+.--.||||.+.+|++- || .+.|.|.++++. ++++- ++.-++.-++-.+ -.||+++++++
T Consensus 96 ~gIPGtvGGAv~mNAGa-----yg~ei~d~l~~V~~~--~~~~~-------~~e~~f~YR~S~~-----~~iil~a~f~l 156 (257)
T PRK13904 96 GKLPGTLGGLVKMNAGL-----KEYEIKNNLESICTN--GGWIL-------KEAIGFDYRSSGI-----NGVILEARFKK 156 (257)
T ss_pred CCCCCCHHHHHHCCCCC-----CCHHHHHEEEEEEEC--CEEEE-------HHHCCCCCCCCCC-----CCEEEEEEEEE
T ss_conf 27884355575231798-----816667108999987--63998-------7887851246688-----86899999980
Q ss_pred CCC
Q ss_conf 467
Q gi|254780761|r 218 LPY 220 (473)
Q Consensus 218 ~p~ 220 (473)
.+-
T Consensus 157 ~~~ 159 (257)
T PRK13904 157 EHG 159 (257)
T ss_pred CCC
T ss_conf 789
No 24
>pfam09330 Lact-deh-memb D-lactate dehydrogenase, membrane binding. Members of this family are predominantly found in prokaryotic D-lactate dehydrogenase, forming the cap-membrane-binding domain, which consists of a large seven-stranded antiparallel beta-sheet flanked on both sides by alpha-helices. They allow for membrane association.
Probab=98.43 E-value=4.3e-07 Score=63.91 Aligned_cols=185 Identities=18% Similarity=0.298 Sum_probs=97.2
Q ss_pred HHHHHHHHHHCCCC----CCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 79999998614443----41157532110011135430689999999988886313456531001588889644331001
Q gi|254780761|r 260 NFILKLVVKHIPNT----FSPLSDTSPWYILLEISSTETLERAQNIANTILATGFNKKILTEWILPSLDEEKNAIWCLRN 335 (473)
Q Consensus 260 ~~~~~~~~~~~~~~----~~~~~~~~~~~lli~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lw~~R~ 335 (473)
+..++...+.+|+. .....+.-...+++..++.. .+.+........+ ..-..+++.++..+.+..+ ..|-
T Consensus 86 Dr~mQ~~s~l~P~hLPkrm~~~R~~yeHHlilkms~~g-i~Ea~~~l~~~F~----~~~~g~fFeCt~~E~~~A~-LhRF 159 (291)
T pfam09330 86 DRVMQFLSRLLPNHLPKRMRDYRDKYEHHLLLKMSGNG-IEEARKYLKEYFA----DAEDGDYFECTAEEGKKAF-LHRF 159 (291)
T ss_pred HHHHHHHHHHCHHHCCHHHHHHHHHHHEEEEEEECCCC-HHHHHHHHHHHHC----CCCCCCEEEECHHHHHHHH-HHHH
T ss_conf 99999998768452559999998642242799966323-8999999999844----7788886986899999998-8788
Q ss_pred CCCCC--------CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCEEEEEEECCCCCCCHHHHH
Q ss_conf 22112--------2235664444210013128999999999988634872289999844986999984277888068999
Q gi|254780761|r 336 NIPLA--------QKREGRSIKHDISVPIGQIPSFLQEVKKSVSSIFPKTRIGLFGHIGDGNIHFNVFPPTDENQDEFLS 407 (473)
Q Consensus 336 ~~~~~--------~~~~g~~~~~Dvavp~~~l~~~~~~v~~~l~~~~~~~~~~~~gH~g~g~lh~~~~~~~~~~~~~~~~ 407 (473)
.+..+ .+..+..+..|+|.|... .+..+.+-..++... ... ..|||+.+..+|-.++.....+.
T Consensus 160 ~aAgAa~RY~~~~~~~~~di~alDiAL~RNd-~~WfE~LP~ei~~~~-~~k-lyyGHFfChV~HqdYivKkGvD~----- 231 (291)
T pfam09330 160 AAAGAAIRYRAVHRDEVEDIVALDIALRRND-REWFEHLPEEIEDKI-VHK-LYYGHFFCHVFHQDYIVKKGVDA----- 231 (291)
T ss_pred HHCCHHHHHHHHHCCCCCCEEEEEEEECCCC-CCHHHHCCHHHHHHH-HHH-EEHHHHHHHHHHHHHHHHCCCCH-----
T ss_conf 8523388999981345587357987754775-205776979788665-425-20003777464787776068899-----
Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 9999999999999998189189973555656888887317899999999988715377788876
Q gi|254780761|r 408 LHWNTINNIVYSVVLSYGGSIAAEHGIGQLHKKRLEGILEPTEIKIMKKIKEIFDPAGIMNPGK 471 (473)
Q Consensus 408 ~~~~~i~~~~~~~~~~~gG~is~eHGiG~~k~~~~~~~~~~~~~~~l~~iK~~~DP~gilNPGk 471 (473)
.++++.+.+..-+-|+-.-+||.||.+.. -.+ .|++.=+.+||.|.||||-
T Consensus 232 ---~~lK~~ml~~ld~rGA~YPAEHNVGHlY~------A~~----~l~~fY~~lDPtNsfNPGI 282 (291)
T pfam09330 232 ---KALKHRMLKLLDERGAKYPAEHNVGHLYE------AKP----SLKKFYRELDPTNSFNPGI 282 (291)
T ss_pred ---HHHHHHHHHHHHHCCCCCCCCCCCCCCCC------CCH----HHHHHHHHCCCCCCCCCCC
T ss_conf ---99999999999965886874237776311------886----8999998369977888877
No 25
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit. This model represents the second largest chain, beta, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=97.79 E-value=2.5e-05 Score=52.81 Aligned_cols=106 Identities=16% Similarity=0.288 Sum_probs=72.4
Q ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCHHH
Q ss_conf 87589954998999999999987298299975887776540104888669997630027742112373455114420022
Q gi|254780761|r 42 TSPLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDIDLRSNTIAVDAGINLFN 121 (473)
Q Consensus 42 ~p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~~~~vvld~~~mn~il~id~~~~~v~veaGv~~~~ 121 (473)
.|.-..+|.|.+|..+++.- +. +- .+-.|||.+.-..--.......+||++++...-.|..++..++++|++++.+
T Consensus 3 ~~F~y~rP~sl~eAl~lL~~-~~-~a--~~lAGGTdL~~~~~~~~~~p~~lIdl~~I~eL~~I~~~~~~l~IGA~vt~~~ 78 (321)
T TIGR03195 3 TDFRTLRPASLADAVAALAA-HP-AA--RPLAGGTDLLPNLRRGLGQPETLVDLTGIDEIAQLSTLADGLRIGAGVTLAA 78 (321)
T ss_pred CCCEEECCCCHHHHHHHHHH-CC-CC--EEEECCCCHHHHHHCCCCCCCEEEECCCCCCCCEEEECCCEEEECCCCCHHH
T ss_conf 98553289999999999860-99-98--8997420299998557789985898788856470787699399913444888
Q ss_pred HHH--HCCCCC-------CCCCCCCCCCCCCCCHHHHHCC
Q ss_conf 221--001232-------2234433432111311222123
Q gi|254780761|r 122 VQK--IAEKNH-------RLFPLSLPSEKYCHIGGNLATN 152 (473)
Q Consensus 122 l~~--~l~~~g-------~~~p~~p~s~~~aTvGG~ia~~ 152 (473)
|.+ .+..+- ..+ -+|+-...+||||+|+++
T Consensus 79 l~~~~~v~~~~P~L~~a~~~i-gspqIRn~gTiGGNl~~~ 117 (321)
T TIGR03195 79 LAEDALVRTRWPALAQAARAV-AGPTHRAAATLGGNLCLD 117 (321)
T ss_pred HHHCHHHHHHHHHHHHHHHHH-CCHHHHCCEEECCCCCCC
T ss_conf 775978787749999999974-889770732202432345
No 26
>pfam04030 ALO D-arabinono-1,4-lactone oxidase. This domain is specific to D-arabinono-1,4-lactone oxidase EC:1.1.3.-, which is involved in the final step of the D-erythroascorbic acid biosynthesis pathway.
Probab=97.76 E-value=0.00096 Score=42.86 Aligned_cols=115 Identities=19% Similarity=0.328 Sum_probs=67.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEE---EEE--------EECC-CEEEEEE--ECCCCCCCHHHHHH
Q ss_conf 35664444210013128999999999988634872289---999--------8449-8699998--42778880689999
Q gi|254780761|r 343 REGRSIKHDISVPIGQIPSFLQEVKKSVSSIFPKTRIG---LFG--------HIGD-GNIHFNV--FPPTDENQDEFLSL 408 (473)
Q Consensus 343 ~~g~~~~~Dvavp~~~l~~~~~~v~~~l~~~~~~~~~~---~~g--------H~g~-g~lh~~~--~~~~~~~~~~~~~~ 408 (473)
+.......|.+||.++..++++++++.+++........ .+. .+.+ -.+++.+ +.+.+...+
T Consensus 121 r~~~f~e~EyavP~e~~~~al~~l~~~i~~~~~~v~fPiEvR~v~ad~~wLSpa~~r~s~~I~~~~y~~~~~~~~----- 195 (258)
T pfam04030 121 CLFRQFEMEWAIPLEKGPEALRELRDWIAKAALRVHFPIEVRFTAADDIWLSPAYGRDTCYINVHMYRPYGRNVP----- 195 (258)
T ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEECCCCCCCH-----
T ss_conf 775302345305466489999999999971588614677887634886555767899749999998137787740-----
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEECCCCHHH---HHHHHHHCCHHHHHHHHHHHHHHCCCCCC-CC
Q ss_conf 999999999999998189189973555656---88888731789999999998871537778-88
Q gi|254780761|r 409 HWNTINNIVYSVVLSYGGSIAAEHGIGQLH---KKRLEGILEPTEIKIMKKIKEIFDPAGIM-NP 469 (473)
Q Consensus 409 ~~~~i~~~~~~~~~~~gG~is~eHGiG~~k---~~~~~~~~~~~~~~~l~~iK~~~DP~gil-NP 469 (473)
++.+.+.+..+..++||.. | -||.+ ...+.+.|. .++-++++++.+||+|+| ||
T Consensus 196 -~~~~f~~~E~i~~~~ggRP---H-WGK~h~~~~~~l~~~YP--~~~~F~~lR~~lDP~g~F~N~ 253 (258)
T pfam04030 196 -YLRYFRAFEDIMKKYGGRP---H-WAKNHTLTAADLEELYP--DWDRFLAVRKRLDPDGVFLNP 253 (258)
T ss_pred -HHHHHHHHHHHHHHCCCEE---C-CCCCCCCCHHHHHHHCC--CHHHHHHHHHHHCCCCCCCCH
T ss_conf -9999999999999739840---6-30146789999998781--899999999985988752777
No 27
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional
Probab=97.74 E-value=3.6e-05 Score=51.83 Aligned_cols=148 Identities=16% Similarity=0.203 Sum_probs=86.3
Q ss_pred EEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCC-CCCEEEECCCCCHHHHHH
Q ss_conf 9954998999999999987298299975887776540104888669997630027742112-373455114420022221
Q gi|254780761|r 46 VLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDIDL-RSNTIAVDAGINLFNVQK 124 (473)
Q Consensus 46 Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~~~~vvld~~~mn~il~id~-~~~~v~veaGv~~~~l~~ 124 (473)
..+|.|.+|..++++- +. +. .+-+|||.+.-..-........+||+++++....|+. ++++++++|.+++.++.+
T Consensus 7 Y~~P~sl~eA~~ll~~-~~-~a--~ilAGGTdL~~~~~~~~~~~~~lIdi~~I~eL~~I~~~~dg~l~IGA~vT~~el~~ 82 (292)
T PRK09971 7 YHEAATLADAIELLAD-NP-QA--KLIAGGTDVLIQLHHHNDRYRHLVDIRNIAELRGITLAEDGSIRIGAATTFTQIIE 82 (292)
T ss_pred EECCCCHHHHHHHHHH-CC-CC--EEEECCCHHHHHHHCCCCCCCEEEECCCCHHHCCEEECCCCCEEEEECCCHHHHHC
T ss_conf 7288999999999841-99-98--79963731899985688998858883578254577887998399970672898751
Q ss_pred H--CCCCC-------CCCCCCCCCCCCCCCHHHHHCCCCCCHHHHCCCCCCC-----CCCCCCCC--CCCCCEEEEEECC
Q ss_conf 0--01232-------2234433432111311222123564000112573334-----44332346--6653021122013
Q gi|254780761|r 125 I--AEKNH-------RLFPLSLPSEKYCHIGGNLATNAGGTAVLSYGNIRHL-----CLGIEAVL--PTGDIWNGMHKLI 188 (473)
Q Consensus 125 ~--l~~~g-------~~~p~~p~s~~~aTvGG~ia~~~~G~~s~~yG~~~d~-----v~~~~vv~--~~G~i~~~~~~~~ 188 (473)
. ++++- ..+ -+|+=...+||||+|++.+. ..|+ .++.++++ ++|+ + .+
T Consensus 83 ~~~i~~~~p~L~~a~~~i-g~~qIRN~aTiGGni~~a~p---------~~D~~p~LlaldA~v~i~s~~g~--R---~i- 146 (292)
T PRK09971 83 DPIVQRHLPALAEAAVSI-GGPQIRNVATIGGNICNGAT---------SADSATPLFALDAKLELHSPNGV--R---FV- 146 (292)
T ss_pred CHHHHHHHHHHHHHHHHH-CCHHHCCCCCCCCCCCCCCC---------CCHHHHHHHHHHCEEEEECCCCC--E---EC-
T ss_conf 968886666999999973-89967024143665446787---------50167999996404689738997--7---33-
Q ss_pred CCCCCCCCCCCCCCCCCC----CCCEEEEEEEECC
Q ss_conf 322322233322346545----4310127994046
Q gi|254780761|r 189 KDNSRYDIRDLLIGSEGT----LGIITGAVLRLLP 219 (473)
Q Consensus 189 ~~~~G~dl~~l~~GseGt----lGiITevtlrl~p 219 (473)
.+..+|.|.--| --++|++.+.-.|
T Consensus 147 ------pl~dF~~g~~~t~l~~~Eil~~I~ip~~~ 175 (292)
T PRK09971 147 ------PINGFYTGPGKVSLEHDEILVAFHIPPQP 175 (292)
T ss_pred ------CHHHHCCCCCCCCCCCCCEEEEEEECCCC
T ss_conf ------38996257553335775369999974788
No 28
>PRK09799 putative selenate reductase subunit YgfM; Provisional
Probab=97.72 E-value=3.8e-05 Score=51.63 Aligned_cols=141 Identities=18% Similarity=0.255 Sum_probs=87.9
Q ss_pred EEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCHHHHHHH
Q ss_conf 99549989999999999872982999758877765401048886699976300277421123734551144200222210
Q gi|254780761|r 46 VLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDIDLRSNTIAVDAGINLFNVQKI 125 (473)
Q Consensus 46 Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~~~~vvld~~~mn~il~id~~~~~v~veaGv~~~~l~~~ 125 (473)
..+|.|.+|..++++ +++=.-.+-+|||.+. ..+......+.+|+++. ....|+.++..++++|.+++.++.+.
T Consensus 5 Y~rP~Sl~EA~~lL~---~~~~~a~~laGGt~L~--~~~~~~~~~~~i~l~~i-eL~~I~~~~~~l~IGA~~t~~~l~~~ 78 (258)
T PRK09799 5 FFRPDSVEQALELKR---RYQDEAVWFAGGSKLN--ATPTRTDKKIAISLQDL-ELDWIDWDNGALRIGAMSRLQPLRDA 78 (258)
T ss_pred CCCCCCHHHHHHHHH---HCCCCCEEECCCCCHH--HHHCCCCCCEEEECCCC-CCCEEEECCCEEEECCCCCHHHHHHC
T ss_conf 359798999999997---6899878974887465--45336677347872536-75608975999999453829999758
Q ss_pred CC-CCCCC--CC--CCCCCCCCCCCHHHHHCCCCCCHHHHCCCCCCC-----CCCCCCCCCCCCCEEEEEECCCCCCCCC
Q ss_conf 01-23222--34--433432111311222123564000112573334-----4433234666530211220133223222
Q gi|254780761|r 126 AE-KNHRL--FP--LSLPSEKYCHIGGNLATNAGGTAVLSYGNIRHL-----CLGIEAVLPTGDIWNGMHKLIKDNSRYD 195 (473)
Q Consensus 126 l~-~~g~~--~p--~~p~s~~~aTvGG~ia~~~~G~~s~~yG~~~d~-----v~~~~vv~~~G~i~~~~~~~~~~~~G~d 195 (473)
-. +..+. .. -+|+=...+||||+|++.+. ..|+ .++.++++.+++ .-.
T Consensus 79 ~~~~~~L~~a~~~i~s~qIRN~gTiGGnia~a~p---------~aD~~p~LlAl~A~v~~~~~~-------------~ip 136 (258)
T PRK09799 79 RFIPAALREALGFVYSRHVRNQSTIGGEIAARQE---------ESVLLPVLLALDAELVFGNGE-------------TLS 136 (258)
T ss_pred CCCHHHHHHHHHHHCCHHHCCCEEEEEEECCCCC---------CHHHHHHHHHCCCEEEECCCC-------------EEE
T ss_conf 4215899999986468866042045325215788---------524689998679899976896-------------887
Q ss_pred CCCCCCCCCCCCCCEEEEEEE
Q ss_conf 333223465454310127994
Q gi|254780761|r 196 IRDLLIGSEGTLGIITGAVLR 216 (473)
Q Consensus 196 l~~l~~GseGtlGiITevtlr 216 (473)
+.++|.|..+ -++|++.+.
T Consensus 137 ~~dF~~g~~~--Ell~~I~ip 155 (258)
T PRK09799 137 IEDYLACPCD--RLLTEIIIK 155 (258)
T ss_pred HHHHHCCCCC--EEEEEEEEC
T ss_conf 9998479998--189999963
No 29
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit. This protein is suggested by Bebien, et al., to be the FAD-binding subunit of a molydbopterin-containing selenate reductase. Our comparative genomics suggests it to be a subunit of a selenium-dependent molybdenum hydroxylase for an unknown substrate.
Probab=97.70 E-value=3.5e-05 Score=51.92 Aligned_cols=141 Identities=19% Similarity=0.274 Sum_probs=86.3
Q ss_pred EEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCHHHHHHH
Q ss_conf 99549989999999999872982999758877765401048886699976300277421123734551144200222210
Q gi|254780761|r 46 VLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDIDLRSNTIAVDAGINLFNVQKI 125 (473)
Q Consensus 46 Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~~~~vvld~~~mn~il~id~~~~~v~veaGv~~~~l~~~ 125 (473)
.++|.|.+|..++++ +++=.-..-+|||.+.- .+......+.+|++++ ..-.|+.++..++++|++++.++.+.
T Consensus 4 Y~rP~sl~EA~~lL~---~~~~~a~ilaGGtdL~~--~~~~~~~~~~i~l~~~-~L~~I~~~~~~l~IGA~~t~~~l~~~ 77 (257)
T TIGR03312 4 FFRPESTIQALELKK---RHTGVAVWFAGGSKLNA--TPTRTDKKVAISLDKL-ALDKIELQGGALHIGAMCHLQSLIDN 77 (257)
T ss_pred CCCCCCHHHHHHHHH---HCCCCCEEECCCCCHHH--HHCCCCCCEEEECCCC-CCCCEEECCCEEEECCCCCHHHHHHC
T ss_conf 218898999999997---68998889737857453--3347777436772603-75608976999999541809999649
Q ss_pred CC-CCCCC----CCCCCCCCCCCCCHHHHHCCCCCCHHHHCCCCCCC-----CCCCCCCCCCCCCEEEEEECCCCCCCCC
Q ss_conf 01-23222----34433432111311222123564000112573334-----4433234666530211220133223222
Q gi|254780761|r 126 AE-KNHRL----FPLSLPSEKYCHIGGNLATNAGGTAVLSYGNIRHL-----CLGIEAVLPTGDIWNGMHKLIKDNSRYD 195 (473)
Q Consensus 126 l~-~~g~~----~p~~p~s~~~aTvGG~ia~~~~G~~s~~yG~~~d~-----v~~~~vv~~~G~i~~~~~~~~~~~~G~d 195 (473)
-. +..+. .--+|+-...+||||+|++.+. ..|+ .++.++++.+++. -.
T Consensus 78 ~~~~~~L~~a~~~i~~~qIRN~gTiGGnla~a~P---------~aD~~p~LlAl~A~v~l~~~~~-------------ip 135 (257)
T TIGR03312 78 ELTPAALKEALGFVYSRHIRNQATIGGEIAAFQS---------ESLLLPVLLALKATVVLANASQ-------------MD 135 (257)
T ss_pred CCCHHHHHHHHHHHCCHHHCCCEEEEEEECCCCC---------CHHHHHHHHHCCCEEEECCCCE-------------EE
T ss_conf 4423899999986557865121044346215787---------3588999997498999858968-------------87
Q ss_pred CCCCCCCCCCCCCCEEEEEEE
Q ss_conf 333223465454310127994
Q gi|254780761|r 196 IRDLLIGSEGTLGIITGAVLR 216 (473)
Q Consensus 196 l~~l~~GseGtlGiITevtlr 216 (473)
+..+|.|..+ =++|++.+.
T Consensus 136 ~~dF~~g~~~--Eil~~I~iP 154 (257)
T TIGR03312 136 IEDYLASEQR--ELIVEVIIP 154 (257)
T ss_pred HHHHHCCCCC--EEEEEEEEC
T ss_conf 9997078998--089999964
No 30
>pfam00941 FAD_binding_5 FAD binding domain in molybdopterin dehydrogenase.
Probab=97.48 E-value=0.00019 Score=47.28 Aligned_cols=105 Identities=18% Similarity=0.228 Sum_probs=68.8
Q ss_pred CEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCHHHHH
Q ss_conf 58995499899999999998729829997588777654010488866999763002774211237345511442002222
Q gi|254780761|r 44 PLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDIDLRSNTIAVDAGINLFNVQ 123 (473)
Q Consensus 44 ~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~~~~vvld~~~mn~il~id~~~~~v~veaGv~~~~l~ 123 (473)
.--.+|.|.+|..++++- +. ...+-+|||.+.-..--.......+||++++...-.|..++..++++|++++.++.
T Consensus 3 f~y~~P~sl~ea~~ll~~---~~-~a~ilAGGTdl~~~~~~~~~~~~~lIdl~~I~eL~~I~~~~~~l~IGA~vt~~~l~ 78 (171)
T pfam00941 3 FTYYRPASLEEALALLAK---GP-DAKLVAGGTSLGPEMKLRLARPPVLIDINGIPELRGIEETGDGLEIGAAVTLTELI 78 (171)
T ss_pred CEEECCCCHHHHHHHHHH---CC-CCEEEECCCHHHHHHHCCCCCCCEEEEHHHCCCCCEEEEECCEEEEEEEEEHHHHH
T ss_conf 559778999999999966---99-98899747628999743768988599856778765389819989993321699976
Q ss_pred HH--CCCCCC-------CCCCCCCCCCCCCCHHHHHCCC
Q ss_conf 10--012322-------2344334321113112221235
Q gi|254780761|r 124 KI--AEKNHR-------LFPLSLPSEKYCHIGGNLATNA 153 (473)
Q Consensus 124 ~~--l~~~g~-------~~p~~p~s~~~aTvGG~ia~~~ 153 (473)
+. +..+-- .+ -+|+=...+||||+|++.+
T Consensus 79 ~~~~~~~~~p~l~~a~~~i-a~~qIRn~aTiGGni~~a~ 116 (171)
T pfam00941 79 DSPLVAEVFPALAEALRKI-ASPQIRNVATIGGNIANAS 116 (171)
T ss_pred HCHHHHHHHHHHHHHHHHC-CCHHHEEEEEECCEECCCC
T ss_conf 3966665649999998713-8975745777624310366
No 31
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit; InterPro: IPR014307 Members of this protein are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalisation among xanthine dehydrogenases in eukaryotes. ; GO: 0004854 xanthine dehydrogenase activity, 0004855 xanthine oxidase activity, 0050660 FAD binding.
Probab=97.31 E-value=0.00027 Score=46.28 Aligned_cols=131 Identities=15% Similarity=0.246 Sum_probs=80.6
Q ss_pred CCCCCCCEE--EECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCC-CCEEEEECCCCCCCCCCCCCCCEEEEC
Q ss_conf 676687589--95499899999999998729829997588777654010488-866999763002774211237345511
Q gi|254780761|r 38 IYHGTSPLV--LLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKN-RKDIILSIKRMNRIRDIDLRSNTIAVD 114 (473)
Q Consensus 38 ~~~~~p~~V--v~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~-~~~vvld~~~mn~il~id~~~~~v~ve 114 (473)
.+...-.-+ +.|.|.+|+++|... +=+..|+. |+|=+- ==|.... .=..||-.++....-.|+..+..++++
T Consensus 219 ~l~~~~~~~~W~~P~t~~dLA~l~~a--~P~ArivA--GsTDVG-LWVTk~~R~L~~~i~~g~v~EL~~i~~~~~~i~iG 293 (515)
T TIGR02963 219 ELNSGGERFTWIAPTTLDDLAALKAA--HPKARIVA--GSTDVG-LWVTKQMRDLPDVIYVGQVAELKRIEETDDGIEIG 293 (515)
T ss_pred EEECCCCCEEEEECCCHHHHHHHHHH--CCCCEEEE--CCEEHH-HHHHHHHHHHHCCCCCCCCHHHCEEEECCCEEEEE
T ss_conf 98417861588706888999999972--89958996--460046-68856421121110256843211013348726982
Q ss_pred CCCCHHHHHHHCCCCCCCCC----------C------CCCCCCCCCCHHHHHCCCCCCHHHHCCCCCCC-----CCCCCC
Q ss_conf 44200222210012322234----------4------33432111311222123564000112573334-----443323
Q gi|254780761|r 115 AGINLFNVQKIAEKNHRLFP----------L------SLPSEKYCHIGGNLATNAGGTAVLSYGNIRHL-----CLGIEA 173 (473)
Q Consensus 115 aGv~~~~l~~~l~~~g~~~p----------~------~p~s~~~aTvGG~ia~~~~G~~s~~yG~~~d~-----v~~~~v 173 (473)
|||++.+..+.|+++-=-|+ - +.|=...+||||||||.| +|-|. -++.++
T Consensus 294 A~v~l~~a~~~L~~~~P~l~~~T~~Fq~~~el~~RfAs~QiRN~GTlGGNIANGS---------PIGD~pP~LIALGA~l 364 (515)
T TIGR02963 294 AGVTLTDAYAALAERYPELGAKTRLFQAALELLRRFASLQIRNAGTLGGNIANGS---------PIGDSPPALIALGATL 364 (515)
T ss_pred CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC---------CCCCCCHHHHHCCCEE
T ss_conf 4888889999998724220134788999999999868897320110136422668---------7666783787139879
Q ss_pred CCCCCCCEE
Q ss_conf 466653021
Q gi|254780761|r 174 VLPTGDIWN 182 (473)
Q Consensus 174 v~~~G~i~~ 182 (473)
+|=.|+--|
T Consensus 365 ~LR~G~~~R 373 (515)
T TIGR02963 365 TLRKGETRR 373 (515)
T ss_pred EEECCCCCC
T ss_conf 997077523
No 32
>TIGR03199 pucC xanthine dehydrogenase C subunit. This gene has been characterized in B. subtilis as the FAD binding-subunit of xanthine dehydrogenase (pucC), acting in conjunction with pucD, the molybdopterin-binding subunit and pucE, the FeS-binding subunit.
Probab=97.07 E-value=0.00056 Score=44.32 Aligned_cols=101 Identities=19% Similarity=0.247 Sum_probs=64.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEE-CCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCHHHHHHH--
Q ss_conf 499899999999998729829997588777654010-48886699976300277421123734551144200222210--
Q gi|254780761|r 49 PSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIP-RKNRKDIILSIKRMNRIRDIDLRSNTIAVDAGINLFNVQKI-- 125 (473)
Q Consensus 49 P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p-~~~~~~vvld~~~mn~il~id~~~~~v~veaGv~~~~l~~~-- 125 (473)
|.|.+|..+++.-- . +-.+ -+|||.+.-...- .......+||+++....-.|..++..++++|.+++.++.+.
T Consensus 1 P~sl~Eal~ll~~~-~-~a~~--laGGt~l~~~~~~~~~~~p~~lIdl~~I~eL~~I~~~~~~l~IGA~vt~~~i~~~~~ 76 (264)
T TIGR03199 1 PAALDEAWSLLEKA-P-DSTF--VSGSTLLQLQWEKGTLPMKQHLVSLEGIDELKGISTSDTHVSIGALTTLNECRKNPL 76 (264)
T ss_pred CCCHHHHHHHHHHC-C-CCEE--EECCCHHHHHHHCCCCCCCCEEEECCCCCCCCCEEECCCEEEEEECCCHHHHHHCHH
T ss_conf 99989999999759-9-9979--978750077673276578873897799800135897799799952681999752978
Q ss_pred CCCCCCCCC------CCCCCCCCCCCHHHHHCCC
Q ss_conf 012322234------4334321113112221235
Q gi|254780761|r 126 AEKNHRLFP------LSLPSEKYCHIGGNLATNA 153 (473)
Q Consensus 126 l~~~g~~~p------~~p~s~~~aTvGG~ia~~~ 153 (473)
++++--.+. -+|+=...+||||+||+..
T Consensus 77 i~~~~p~L~~a~~~ig~~qIRN~gTiGGnia~~~ 110 (264)
T TIGR03199 77 IKRALPCFVDAASAIAAPGVRNRATIGGNIASGI 110 (264)
T ss_pred HHHHCHHHHHHHHHHCCHHHEEEEEECCCCCCCC
T ss_conf 8877769999998748863231146545125787
No 33
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase; InterPro: IPR003170 Members of this family are UDP-N-acetylenolpyruvoylglucosamine reductase enzymes, which are also called UDP-N-acetylmuramate dehydrogenases. This enzyme is responsible for the synthesis of UDP-N-acetylmuramic acid in bacterial cell wall biosynthesis and consequently provides an attractive target for the design of antibacterial agents. The crystal structure of UDP-N-acetylenolpyruvylglucosamine reductase in the presence of its substrate, enolpyruvyl-UDP-N-acetylglucosamine, has been solved to 2.7 A resolution. The structure reveals a novel flavin binding motif, shows a striking alignment of the flavin with the substrate, and suggests a catalytic mechanism for the reduction of this enol ether . ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0009252 peptidoglycan biosynthetic process.
Probab=96.85 E-value=0.0024 Score=40.30 Aligned_cols=135 Identities=23% Similarity=0.334 Sum_probs=102.4
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCC-CEEEEECCCCCCCCCCCCCCCEEEECCCC
Q ss_conf 76687589954998999999999987298299975887776540104888-66999763002774211237345511442
Q gi|254780761|r 39 YHGTSPLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNR-KDIILSIKRMNRIRDIDLRSNTIAVDAGI 117 (473)
Q Consensus 39 ~~~~p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~~-~~vvld~~~mn~il~id~~~~~v~veaGv 117 (473)
........+.|.+.+++..++....+.++|...-|.|+++. +-.... +++++.+.....+ ..+++...+++++|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~n~l---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~ 84 (327)
T TIGR00179 9 IGGNARLLVVPKSLEELVNVLDNAKEEDLPLLILGGGSNLL---VLDEGKLGGVILNLGYGLDH-EEDEDGEYLTVGGGE 84 (327)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCEE---EECCCCHHHHHHHHHHHHHH-HCCCCCCEEEECCCC
T ss_conf 37632012300234789999865542174146752465135---41443000333333320011-103566667751554
Q ss_pred CHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHCCC-CCCCCCCCCCC-CCCCCCEEE
Q ss_conf 0022221001232223443343211131122212356400011257-33344433234-666530211
Q gi|254780761|r 118 NLFNVQKIAEKNHRLFPLSLPSEKYCHIGGNLATNAGGTAVLSYGN-IRHLCLGIEAV-LPTGDIWNG 183 (473)
Q Consensus 118 ~~~~l~~~l~~~g~~~p~~p~s~~~aTvGG~ia~~~~G~~s~~yG~-~~d~v~~~~vv-~~~G~i~~~ 183 (473)
.|..+-.+....|+. +.+....--.|+||.+-.|++ .||. +.+.+....++ .++|+....
T Consensus 85 ~~~~~~~~~~~~~~~-gl~~~~~~pg~~g~~~~~n~g-----~~~~~~~~~~~~~~~~~~~~g~~~~~ 146 (327)
T TIGR00179 85 NWHKLVKYALKNGLS-GLEFLAGLPGTLGGAVIMNAG-----AYGVELKEVLVKATVLELPDGKTEWL 146 (327)
T ss_pred CHHHHHHHHHHCCCC-HHHHHHHCCCCCCCHHHHCCC-----CCHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 378999988633731-014543055311320221034-----11134787776554201467752343
No 34
>pfam09265 Cytokin-bind Cytokinin dehydrogenase 1, FAD and cytokinin binding. Members of this family adopt an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. They are predominantly found in plant cytokinin dehydrogenase 1, where they are capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin.
Probab=96.15 E-value=0.1 Score=30.06 Aligned_cols=116 Identities=15% Similarity=0.140 Sum_probs=61.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHH-HHHCCCCEEEEEE---E---------ECCC-EEE-EEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 421001312899999999998-8634872289999---8---------4498-699-99842778880689999999999
Q gi|254780761|r 350 HDISVPIGQIPSFLQEVKKSV-SSIFPKTRIGLFG---H---------IGDG-NIH-FNVFPPTDENQDEFLSLHWNTIN 414 (473)
Q Consensus 350 ~Dvavp~~~l~~~~~~v~~~l-~~~~~~~~~~~~g---H---------~g~g-~lh-~~~~~~~~~~~~~~~~~~~~~i~ 414 (473)
.++-||-+++.+|.+.+-+.+ +..-....+-+|= + .-+. .+| +-++.............+..+-+
T Consensus 143 LNlFVP~S~I~dF~~~Vf~~il~~~~~~GpiLvYP~~r~kwd~r~s~v~Pde~vfYlvalLrsa~P~~~~~~~~~l~~qN 222 (280)
T pfam09265 143 LNLFVPKSRILDFDRGVFKGILKNTNNSGPILVYPMNRSKWDDRMSAVIPDEDVFYLVGLLRSAVPSAGPSDLEALENQN 222 (280)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 44047565688888999999974579986189986447677887654489888799999865678888863499999999
Q ss_pred HHHHHHHHHHC--CCE--EEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999999818--918--9973555656888887317899999999988715377788876
Q gi|254780761|r 415 NIVYSVVLSYG--GSI--AAEHGIGQLHKKRLEGILEPTEIKIMKKIKEIFDPAGIMNPGK 471 (473)
Q Consensus 415 ~~~~~~~~~~g--G~i--s~eHGiG~~k~~~~~~~~~~~~~~~l~~iK~~~DP~gilNPGk 471 (473)
+++.+.|.+.| +.- .| | ..+.+| ...+|+ .++.+.+.|+.|||++||.||-
T Consensus 223 ~~il~~c~~agig~KqYLp~-y---~s~~dW-~~HFG~-kW~~F~~rK~~yDP~~ILsPGQ 277 (280)
T pfam09265 223 RRILEFCEGAGIGYKQYLPH-Y---TSQEDW-KRHFGA-KWDRFVDRKARYDPKAILSPGQ 277 (280)
T ss_pred HHHHHHHHHCCCCEEEECCC-C---CCHHHH-HHHHCH-HHHHHHHHHHHCCCCCCCCCCC
T ss_conf 99999998717872881799-9---998899-987642-2899999987069520268998
No 35
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=95.28 E-value=0.023 Score=34.20 Aligned_cols=130 Identities=15% Similarity=0.302 Sum_probs=78.9
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCC-CCEEEEECCCCCCCCCCCCCCCEEEECCCC
Q ss_conf 7668758995499899999999998729829997588777654010488-866999763002774211237345511442
Q gi|254780761|r 39 YHGTSPLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKN-RKDIILSIKRMNRIRDIDLRSNTIAVDAGI 117 (473)
Q Consensus 39 ~~~~p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~-~~~vvld~~~mn~il~id~~~~~v~veaGv 117 (473)
+++-.+-.+.|.+..|...++. ..-+..++. |+|-+. --+...- .-..+|-..++.....|+..+.+++++||+
T Consensus 199 ~~~~~~r~~~P~~l~D~a~l~a--a~P~AtivA--GsTDvg-LwVtk~mr~l~~vi~v~~l~eL~~i~~~~~~l~iGAgv 273 (493)
T COG4630 199 VGSGDDRFIVPATLADFADLLA--AHPGATIVA--GSTDVG-LWVTKQMRDLNPVIFVGHLAELRRIEVSTGGLEIGAGV 273 (493)
T ss_pred ECCCCCEEEEECCHHHHHHHHH--HCCCCEEEE--CCCCHH-HHHHHHHHHCCCEEEECCHHHHHEEEECCCCEEECCCC
T ss_conf 5489850673153888999986--299977980--575043-67888875058769965636443055358818976676
Q ss_pred CHHHHHHHCCCCCCCCCCC---C---CCCCCCCCHHHHHCCCCCCHHHHCCCC--CCCCCCCCCCCCCCC
Q ss_conf 0022221001232223443---3---432111311222123564000112573--334443323466653
Q gi|254780761|r 118 NLFNVQKIAEKNHRLFPLS---L---PSEKYCHIGGNLATNAGGTAVLSYGNI--RHLCLGIEAVLPTGD 179 (473)
Q Consensus 118 ~~~~l~~~l~~~g~~~p~~---p---~s~~~aTvGG~ia~~~~G~~s~~yG~~--~d~v~~~~vv~~~G~ 179 (473)
++.+..+.|..+--.+..- + +-....||||+|||.|. -|.+ -=..++..+++-.|+
T Consensus 274 t~t~a~~~la~~~P~l~~L~~r~gg~qvRN~gTlGGNIangSP------IGDtPPaLIALgA~ltLr~g~ 337 (493)
T COG4630 274 TYTQAYRALAGRYPALGELWDRFGGEQVRNMGTLGGNIANGSP------IGDTPPALIALGATLTLRSGD 337 (493)
T ss_pred CHHHHHHHHHHHCCHHHHHHHHHCCHHHHCCCCCCCCCCCCCC------CCCCCCHHHHCCCEEEEEECC
T ss_conf 3999999987417338999998500553024443565568886------889981244307689998469
No 36
>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]
Probab=95.27 E-value=0.042 Score=32.55 Aligned_cols=107 Identities=17% Similarity=0.178 Sum_probs=67.0
Q ss_pred CCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCCCEEEEECCCCCCCCCC-CCCCCEEEECCCCCHHH
Q ss_conf 75899549989999999999872982999758877765401048886699976300277421-12373455114420022
Q gi|254780761|r 43 SPLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDI-DLRSNTIAVDAGINLFN 121 (473)
Q Consensus 43 p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~~~~vvld~~~mn~il~i-d~~~~~v~veaGv~~~~ 121 (473)
+.-+.+|.|.+|-..+++- +. -..+-+|||++.-..-.......-++|++++..-+.+ ..+...++++|-+++.+
T Consensus 3 ~f~y~rp~Sv~eA~~ll~~---~~-~a~~laGGt~L~~~~k~~~~~p~~lVdI~~l~~~~~~~~~~g~~l~IGA~vt~~e 78 (284)
T COG1319 3 NFEYYRPASVEEALNLLAR---AP-DAKYLAGGTDLLPLMKLGIERPDHLVDINGLDELLGIVTTEGGSLRIGALVTLTE 78 (284)
T ss_pred CEEEECCCCHHHHHHHHHH---CC-CCEEEECCCHHHHHHHCCCCCCCEEEEECCCHHHHCEEEECCCEEEEEECCCHHH
T ss_conf 4489777999999999974---88-8589407633788764556882407982387045156860698799941252799
Q ss_pred HHHHCCCCCC--------CCCCCCCCCCCCCCHHHHHCCC
Q ss_conf 2210012322--------2344334321113112221235
Q gi|254780761|r 122 VQKIAEKNHR--------LFPLSLPSEKYCHIGGNLATNA 153 (473)
Q Consensus 122 l~~~l~~~g~--------~~p~~p~s~~~aTvGG~ia~~~ 153 (473)
+.+.-..+.. ..--||+=...+|+||+++...
T Consensus 79 i~~~~~~~~~~p~L~ea~~~ia~~qvRN~aTiGGn~c~a~ 118 (284)
T COG1319 79 IARHPAVRRIPPALSEAASAIASPQVRNRATIGGNLCNAD 118 (284)
T ss_pred HHHCHHHHHHCHHHHHHHHHHCCHHHCCEEEECCHHCCCC
T ss_conf 7749433421559999998735854411044233110378
No 37
>pfam08031 BBE Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyse the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine.
Probab=92.36 E-value=0.12 Score=29.75 Aligned_cols=28 Identities=18% Similarity=0.387 Sum_probs=22.5
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 88887317899999999988715377788
Q gi|254780761|r 440 KRLEGILEPTEIKIMKKIKEIFDPAGIMN 468 (473)
Q Consensus 440 ~~~~~~~~~~~~~~l~~iK~~~DP~gilN 468 (473)
.|-...+| ..++-|++||+.+||+|+|+
T Consensus 12 ~~~~~yyG-~ny~rL~~iK~kyDP~n~F~ 39 (45)
T pfam08031 12 DWGEAYFG-GNYERLRKVKAKYDPDNVFR 39 (45)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHCCCCCCC
T ss_conf 79999999-79999999999879444557
No 38
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family; InterPro: IPR006515 These eukaryotic proteins recognize the poly-A of mRNA and consist of four tandem RNA recognition domains at the N terminus followed by a PABP-specific domain at the C terminus. The protein is involved in the transport of mRNAs from the nucleus to the cytoplasm . There are four paralogs in Homo sapiens which are expressed in testis , platelets (Q13310 from SWISSPROT ), broadly expressed (P11940 from SWISSPROT ) and of unknown tissue range (Q15097 from SWISSPROT). ; GO: 0003723 RNA binding.
Probab=86.60 E-value=0.68 Score=24.95 Aligned_cols=55 Identities=18% Similarity=0.221 Sum_probs=41.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 33223222333223465454310127994046754432100001352689999975102
Q gi|254780761|r 188 IKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQK 246 (473)
Q Consensus 188 ~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~~ 246 (473)
+.++.--.|+.+| +.||-||++.++=-+.-..+.++|+-|++-|+|..|+..+-.
T Consensus 190 ~~~V~ed~Lr~~F----~~FG~i~S~~v~~D~~~~~~gFaFvnfe~~EdA~~AvE~~ng 244 (860)
T TIGR01628 190 DPEVNEDKLRELF----AKFGEITSAAVMKDESGRSRGFAFVNFEKHEDAAKAVEEMNG 244 (860)
T ss_pred CCCCCHHHHHHHH----HCCCCEEEEEEEECCCCCEEEEEEECCCCHHHHHHHHHHHCC
T ss_conf 8987666899987----145735776576346887568887416897899999986368
No 39
>COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only]
Probab=84.69 E-value=1.6 Score=22.56 Aligned_cols=11 Identities=45% Similarity=0.906 Sum_probs=6.9
Q ss_pred CCCCHHHHHHH
Q ss_conf 35556568888
Q gi|254780761|r 432 HGIGQLHKKRL 442 (473)
Q Consensus 432 HGiG~~k~~~~ 442 (473)
||+|..++.++
T Consensus 183 hG~g~~~~~~~ 193 (210)
T COG1920 183 HGVGPATKRAL 193 (210)
T ss_pred HCCCHHHHHHH
T ss_conf 48857889887
No 40
>TIGR01182 eda 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related . They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process.
Probab=82.62 E-value=1.6 Score=22.67 Aligned_cols=74 Identities=16% Similarity=0.156 Sum_probs=41.6
Q ss_pred CEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCCCEEEEECC-CCCCCCCCCCCCC-EEEECCCCCHH-
Q ss_conf 58995499899999999998729829997588777654010488866999763-0027742112373-45511442002-
Q gi|254780761|r 44 PLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIK-RMNRIRDIDLRSN-TIAVDAGINLF- 120 (473)
Q Consensus 44 ~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~~~~vvld~~-~mn~il~id~~~~-~v~veaGv~~~- 120 (473)
..|++=++.+|..++.+...+.||+++ -|.+.+. .++-|..+..+.. -+.++||+.+.
T Consensus 11 vPVi~~~~~~~A~~lA~aL~egG~~~~-------------------EvTlRT~~A~~aI~~l~~~~P~~~~iGAGTVL~~ 71 (205)
T TIGR01182 11 VPVIRIDDVEDALPLAKALIEGGLRVL-------------------EVTLRTPVALEAIRALRKEVPKDALIGAGTVLNP 71 (205)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEE-------------------EEEECCCCHHHHHHHHHHHCCCCCEECCCCCCCH
T ss_conf 178872678777899999986798089-------------------8851472168999999972823348716764898
Q ss_pred -HHHHHCCCCCCCCCCCC
Q ss_conf -22210012322234433
Q gi|254780761|r 121 -NVQKIAEKNHRLFPLSL 137 (473)
Q Consensus 121 -~l~~~l~~~g~~~p~~p 137 (473)
|+.+ ..+.|=-|=++|
T Consensus 72 ~Q~~~-A~~AGA~F~vSP 88 (205)
T TIGR01182 72 EQLRQ-AVAAGAQFIVSP 88 (205)
T ss_pred HHHHH-HHHCCCCEEECC
T ss_conf 99999-997089578769
No 41
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=78.50 E-value=3.7 Score=20.31 Aligned_cols=77 Identities=16% Similarity=0.301 Sum_probs=46.1
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHHC-CCCEEEE-----CCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCCCEEEE
Q ss_conf 66875899549989999999999872-9829997-----58877765401048886699976300277421123734551
Q gi|254780761|r 40 HGTSPLVLLPSCTHEVSQILKLATET-NTSITPQ-----GGNTGLVGGQIPRKNRKDIILSIKRMNRIRDIDLRSNTIAV 113 (473)
Q Consensus 40 ~~~p~~Vv~P~~~~ev~~iv~~a~~~-~i~v~pr-----Gggt~~~G~~~p~~~~~~vvld~~~mn~il~id~~~~~v~v 113 (473)
.+.|.++..|+|.|+|.+++++|.++ ..||+.. +||+ ++.-..+ ..+|- -..+|+. .+|-++.|
T Consensus 149 ~G~~yv~fKPGtIeqI~svi~IAka~P~~pIilq~egGraGGH----HSweDld--~llL~--tYs~lR~--~~NIvl~v 218 (717)
T COG4981 149 DGFPYVAFKPGTIEQIRSVIRIAKANPTFPIILQWEGGRAGGH----HSWEDLD--DLLLA--TYSELRS--RDNIVLCV 218 (717)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC----CCHHHCC--CHHHH--HHHHHHC--CCCEEEEE
T ss_conf 5861687667729999999999860899856999715766775----5542202--08999--9999845--79779996
Q ss_pred CCCCCHHH-HHHHC
Q ss_conf 14420022-22100
Q gi|254780761|r 114 DAGINLFN-VQKIA 126 (473)
Q Consensus 114 eaGv~~~~-l~~~l 126 (473)
+.|+-..+ -..||
T Consensus 219 GgGiGtp~~aa~YL 232 (717)
T COG4981 219 GGGIGTPDDAAPYL 232 (717)
T ss_pred CCCCCCHHHCCCCC
T ss_conf 68768812112000
No 42
>pfam00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain). The RRM motif is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disea
Probab=77.74 E-value=1.3 Score=23.23 Aligned_cols=56 Identities=23% Similarity=0.285 Sum_probs=41.4
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 013322322233322346545431012799404675443210000135268999997510
Q gi|254780761|r 186 KLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 186 ~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
..|.+.+.-||..+| ..+|-|.++.+..-+..+.+...++.|.+.++|.+|++.+.
T Consensus 5 nLp~~~t~~~l~~~F----~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~ln 60 (70)
T pfam00076 5 NLPPDTTEEDLKDLF----SKFGPIESIKIVRDETGRSKGFAFVEFEDEEDAEKALEALN 60 (70)
T ss_pred CCCCCCCHHHHHHHH----HHHCCCCCCCEEECCCCCCCCCEEEEECCHHHHHHHHHHHC
T ss_conf 999958899999999----98398142422223578878977999889999999999859
No 43
>COG4792 EscU Type III secretory pathway, component EscU [Intracellular trafficking and secretion]
Probab=77.58 E-value=5.2 Score=19.42 Aligned_cols=16 Identities=25% Similarity=0.492 Sum_probs=10.5
Q ss_pred CCCCCCCCCCCCCCEE
Q ss_conf 4443323466653021
Q gi|254780761|r 167 LCLGIEAVLPTGDIWN 182 (473)
Q Consensus 167 ~v~~~~vv~~~G~i~~ 182 (473)
.+++.|.+.|+++-++
T Consensus 108 fl~a~eai~p~~~kIN 123 (349)
T COG4792 108 FLFALEAIKPKAEKIN 123 (349)
T ss_pred EEEEECCCCCCCCCCC
T ss_conf 2575035688622068
No 44
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=77.28 E-value=2.7 Score=21.23 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=20.8
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 99899999999998729829997
Q gi|254780761|r 50 SCTHEVSQILKLATETNTSITPQ 72 (473)
Q Consensus 50 ~~~~ev~~iv~~a~~~~i~v~pr 72 (473)
=|.+|+.+||++|.+++|-|+|=
T Consensus 79 YT~~di~eiv~YA~~rgI~VIPE 101 (326)
T cd06564 79 YTKEEFKELIAYAKDRGVNIIPE 101 (326)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEC
T ss_conf 68999999999999849989863
No 45
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=76.95 E-value=2.7 Score=21.22 Aligned_cols=23 Identities=17% Similarity=0.343 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 99899999999998729829997
Q gi|254780761|r 50 SCTHEVSQILKLATETNTSITPQ 72 (473)
Q Consensus 50 ~~~~ev~~iv~~a~~~~i~v~pr 72 (473)
=|.+|+.+||++|.+.+|.|+|=
T Consensus 67 YT~~d~~eiv~yA~~rgI~viPE 89 (348)
T cd06562 67 YTPEDVKEIVEYARLRGIRVIPE 89 (348)
T ss_pred ECHHHHHHHHHHHHHCCCEEEEC
T ss_conf 76999999999999759889654
No 46
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=76.86 E-value=2.7 Score=21.17 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=20.9
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 99899999999998729829997
Q gi|254780761|r 50 SCTHEVSQILKLATETNTSITPQ 72 (473)
Q Consensus 50 ~~~~ev~~iv~~a~~~~i~v~pr 72 (473)
=|.+|+.+||++|.+.+|.|+|=
T Consensus 94 YT~~di~eiV~YA~~RgI~VIPE 116 (445)
T cd06569 94 YSRADYIEILKYAKARHIEVIPE 116 (445)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEC
T ss_conf 68999999999999759988650
No 47
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=76.50 E-value=2.9 Score=21.04 Aligned_cols=22 Identities=18% Similarity=0.437 Sum_probs=20.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 9899999999998729829997
Q gi|254780761|r 51 CTHEVSQILKLATETNTSITPQ 72 (473)
Q Consensus 51 ~~~ev~~iv~~a~~~~i~v~pr 72 (473)
|.+|+.+|+++|.+++|-|+|=
T Consensus 73 T~~d~~eiv~yA~~rgI~ViPE 94 (329)
T cd06568 73 TQEDYKDIVAYAAERHITVVPE 94 (329)
T ss_pred CHHHHHHHHHHHHHCCCEEEEC
T ss_conf 8999999999999759989762
No 48
>pfam00728 Glyco_hydro_20 Glycosyl hydrolase family 20, catalytic domain. This domain has a TIM barrel fold.
Probab=74.85 E-value=3.4 Score=20.56 Aligned_cols=23 Identities=13% Similarity=0.368 Sum_probs=21.3
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 99899999999998729829997
Q gi|254780761|r 50 SCTHEVSQILKLATETNTSITPQ 72 (473)
Q Consensus 50 ~~~~ev~~iv~~a~~~~i~v~pr 72 (473)
=|.+|+.+++++|.+++|-|+|=
T Consensus 67 yT~~ei~~lv~yA~~rgI~viPE 89 (335)
T pfam00728 67 YTQEDIREIVAYAAARGIEVIPE 89 (335)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEC
T ss_conf 29999999999999859989862
No 49
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=74.81 E-value=3.3 Score=20.64 Aligned_cols=63 Identities=14% Similarity=0.228 Sum_probs=35.6
Q ss_pred CHHHHHHHHHHCCCCCEECCHHHHHHHHCCCCCCCCCCCCEEE--ECCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 9899999997338441866989987731340136766875899--5499899999999998729829997
Q gi|254780761|r 5 SLDLIQRFISIVGSEGILDDQKLISPYLTEERKIYHGTSPLVL--LPSCTHEVSQILKLATETNTSITPQ 72 (473)
Q Consensus 5 ~~~~~~~l~~i~g~~~v~~d~~~~~~~~~d~~~~~~~~p~~Vv--~P~~~~ev~~iv~~a~~~~i~v~pr 72 (473)
+.+.++++...+-.-... ...-|..|. .-|...|...- -|=|.+|+.+|+++|.+++|-|+|-
T Consensus 15 ~~~~lk~~id~la~~k~N----~l~l~~eD~-f~~~~~~~~~~~~~~YT~~ei~ei~~yA~~r~I~vIPe 79 (301)
T cd06565 15 KVSYLKKLLRLLALLGAN----GLLLYYEDT-FPYEGEPEVGRMRGAYTKEEIREIDDYAAELGIEVIPL 79 (301)
T ss_pred CHHHHHHHHHHHHHHCCC----EEEEEEEEC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEC
T ss_conf 999999999999984995----899999854-44389863455899979999999999999869889445
No 50
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=74.80 E-value=3.4 Score=20.60 Aligned_cols=22 Identities=9% Similarity=0.416 Sum_probs=20.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 9899999999998729829997
Q gi|254780761|r 51 CTHEVSQILKLATETNTSITPQ 72 (473)
Q Consensus 51 ~~~ev~~iv~~a~~~~i~v~pr 72 (473)
|.+|+.+|+++|.+++|-|+|=
T Consensus 66 T~~d~~eiv~yA~~rgI~ViPE 87 (311)
T cd06570 66 TQEQIREVVAYARDRGIRVVPE 87 (311)
T ss_pred CHHHHHHHHHHHHHCCCEEEEE
T ss_conf 8999999999999859989653
No 51
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=74.59 E-value=3.5 Score=20.51 Aligned_cols=22 Identities=23% Similarity=0.501 Sum_probs=20.7
Q ss_pred CHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 9899999999998729829997
Q gi|254780761|r 51 CTHEVSQILKLATETNTSITPQ 72 (473)
Q Consensus 51 ~~~ev~~iv~~a~~~~i~v~pr 72 (473)
|.+|+.+||++|.+++|-|+|=
T Consensus 84 T~~di~eiv~yA~~rgI~VIPE 105 (357)
T cd06563 84 TQEEIREIVAYAAERGITVIPE 105 (357)
T ss_pred CHHHHHHHHHHHHHCCCEEEEC
T ss_conf 9999999999999769989762
No 52
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=74.17 E-value=5 Score=19.52 Aligned_cols=79 Identities=6% Similarity=-0.044 Sum_probs=44.1
Q ss_pred CEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCCCEEEEE-CCCCCCCCCCCCCCCEEEECCCCCH--H
Q ss_conf 589954998999999999987298299975887776540104888669997-6300277421123734551144200--2
Q gi|254780761|r 44 PLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILS-IKRMNRIRDIDLRSNTIAVDAGINL--F 120 (473)
Q Consensus 44 ~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~~~~vvld-~~~mn~il~id~~~~~v~veaGv~~--~ 120 (473)
..|++-.+.++...+.+.+.+.+++++=.-=-|. ++ ++ ++.|.+. ...+...+.+++|..+ .
T Consensus 19 ipVvr~~~~e~a~~~a~aL~~gGi~~iEiTlrt~---~a----------~~~i~~l~~~--~~~~~p~~~iGaGTVl~~~ 83 (223)
T PRK07114 19 VPVFYHSDIEVAKKVVKACYDGGVRAFEFTNRGD---FA----------HEVFGELVKY--AAKECPEMILGVGSIVDAA 83 (223)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCC---CH----------HHHHHHHHHH--HHHHCCCCEEEEECCCCHH
T ss_conf 9999828999999999999988998899958896---58----------9999999999--9866898089655188999
Q ss_pred HHHHHCCCCCCCCCCCCC
Q ss_conf 222100123222344334
Q gi|254780761|r 121 NVQKIAEKNHRLFPLSLP 138 (473)
Q Consensus 121 ~l~~~l~~~g~~~p~~p~ 138 (473)
++++.. ..|-.|-++|.
T Consensus 84 ~~~~a~-~aGA~FiVSP~ 100 (223)
T PRK07114 84 TAALYI-QLGANFVVGPL 100 (223)
T ss_pred HHHHHH-HCCCCEEECCC
T ss_conf 999999-85998999999
No 53
>KOG0125 consensus
Probab=73.80 E-value=2.5 Score=21.42 Aligned_cols=48 Identities=15% Similarity=0.237 Sum_probs=39.8
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 32223332234654543101279940467544321000013526899999751
Q gi|254780761|r 192 SRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLS 244 (473)
Q Consensus 192 ~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~ 244 (473)
..|||+.+| |.+|.|..|.+ ++..+-.+.+.|+.|++.+||-++-.++
T Consensus 109 RdpDL~aMF----~kfG~VldVEI-IfNERGSKGFGFVTmen~~dadRARa~L 156 (376)
T KOG0125 109 RDPDLRAMF----EKFGKVLDVEI-IFNERGSKGFGFVTMENPADADRARAEL 156 (376)
T ss_pred CCCCHHHHH----HHHCCEEEEEE-EECCCCCCCCCEEEECCHHHHHHHHHHH
T ss_conf 680099999----85175046899-8636777752348722824689999985
No 54
>TIGR02392 rpoH_proteo alternative sigma factor RpoH; InterPro: IPR012759 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme . RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognized by the major sigma factors , . This entry represents the proteobacterial clade of sigma factors called RpoH. This protein may be called sigma-32, sigma factor H, heat shock sigma factor, and alternative sigma factor RpoH. Note that in some species the single locus rpoH may be replaced by two or more differentially regulated stress response sigma factors.; GO: 0003677 DNA binding, 0003700 transcription factor activity, 0008270 zinc ion binding, 0016987 sigma factor activity, 0006352 transcription initiation, 0006355 regulation of transcription DNA-dependent, 0009408 response to heat.
Probab=73.19 E-value=2.7 Score=21.17 Aligned_cols=10 Identities=40% Similarity=0.597 Sum_probs=6.8
Q ss_pred HHHHHHHHHH
Q ss_conf 9999998871
Q gi|254780761|r 452 KIMKKIKEIF 461 (473)
Q Consensus 452 ~~l~~iK~~~ 461 (473)
..|+++|..+
T Consensus 268 ~Am~K~k~~~ 277 (279)
T TIGR02392 268 NAMKKLKAAL 277 (279)
T ss_pred HHHHHHHHHH
T ss_conf 9999999984
No 55
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=72.98 E-value=4 Score=20.11 Aligned_cols=23 Identities=13% Similarity=0.320 Sum_probs=20.4
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 99899999999998729829997
Q gi|254780761|r 50 SCTHEVSQILKLATETNTSITPQ 72 (473)
Q Consensus 50 ~~~~ev~~iv~~a~~~~i~v~pr 72 (473)
=|.+|+.+|+++|.+++|-|+|-
T Consensus 69 YT~~di~eiv~yA~~rgI~vIPE 91 (303)
T cd02742 69 YTYAQLKDIIEYAAARGIEVIPE 91 (303)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEC
T ss_conf 18999999999999849989772
No 56
>KOG0122 consensus
Probab=71.86 E-value=3.7 Score=20.36 Aligned_cols=56 Identities=23% Similarity=0.246 Sum_probs=33.5
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC-CCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 01332232223332234654543101279940467-5443210000135268999997510
Q gi|254780761|r 186 KLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPY-RTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 186 ~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~-p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
+++.+...+||..|| ..+|-|+.+-|-.-.. -..+-+.|+.|.+-++|.+++..+.
T Consensus 196 NLsed~~E~dL~eLf----~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~Ln 252 (270)
T KOG0122 196 NLSEDMREDDLEELF----RPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLN 252 (270)
T ss_pred CCCCCCCHHHHHHHH----HCCCCCCEEEEEECCCCCCCCCEEEEEEECHHHHHHHHHHCC
T ss_conf 486124736799985----226761026999705567534238999851788999998713
No 57
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=71.18 E-value=3.6 Score=20.39 Aligned_cols=75 Identities=19% Similarity=0.098 Sum_probs=38.3
Q ss_pred CEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCCCEEEEECCC-CCCCCCCCCCCCEEEECCCCCHHHH
Q ss_conf 589954998999999999987298299975887776540104888669997630-0277421123734551144200222
Q gi|254780761|r 44 PLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKR-MNRIRDIDLRSNTIAVDAGINLFNV 122 (473)
Q Consensus 44 ~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~~~~vvld~~~-mn~il~id~~~~~v~veaGv~~~~l 122 (473)
.+|++-.+.||...+.+.+.+.+++.+= |.+.... ..-|..+-.+-.-+.++||..+..-
T Consensus 16 I~Vlr~~~~e~a~~~a~Ali~gGi~~IE-------------------ITl~sp~a~e~I~~l~~~~p~~lIGAGTVL~~~ 76 (211)
T COG0800 16 VPVIRGDDVEEALPLAKALIEGGIPAIE-------------------ITLRTPAALEAIRALAKEFPEALIGAGTVLNPE 76 (211)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCCEEE-------------------EECCCCCHHHHHHHHHHHCCCCEECCCCCCCHH
T ss_conf 4899708999999999999976987699-------------------964798789999999986746588245566999
Q ss_pred -HHHCCCCCCCCCCCC
Q ss_conf -210012322234433
Q gi|254780761|r 123 -QKIAEKNHRLFPLSL 137 (473)
Q Consensus 123 -~~~l~~~g~~~p~~p 137 (473)
-+.+...|-.|-++|
T Consensus 77 q~~~a~~aGa~fiVsP 92 (211)
T COG0800 77 QARQAIAAGAQFIVSP 92 (211)
T ss_pred HHHHHHHCCCCEEECC
T ss_conf 9999998599789899
No 58
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=69.71 E-value=8 Score=18.22 Aligned_cols=76 Identities=9% Similarity=0.026 Sum_probs=44.2
Q ss_pred CCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCCCEEEEECCC-CCCCCCCCCCCCEEEECCCCC--H
Q ss_conf 7589954998999999999987298299975887776540104888669997630-027742112373455114420--0
Q gi|254780761|r 43 SPLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKR-MNRIRDIDLRSNTIAVDAGIN--L 119 (473)
Q Consensus 43 p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~~~~vvld~~~-mn~il~id~~~~~v~veaGv~--~ 119 (473)
-.+|+|..+.++...+.+.+.+.+++++=.. +++.. ++-|..+..+-..+.+++|.. .
T Consensus 15 vi~Vlr~~~~~~a~~~~~al~~gGi~~iEiT-------------------l~t~~a~~~I~~l~~~~p~~~iGaGTV~~~ 75 (210)
T PRK07455 15 AIAVIRAPDLELGLQMAEAVAAGGMRLIEIT-------------------WNSDQPAELISQLREKLPECIIGTGTLLTL 75 (210)
T ss_pred EEEEEECCCHHHHHHHHHHHHHCCCCEEEEE-------------------CCCCCHHHHHHHHHHHCCCCEEEEEECCCH
T ss_conf 7999975999999999999998799889996-------------------899889999999998789968988818789
Q ss_pred HHHHHHCCCCCCCCCCCCC
Q ss_conf 2222100123222344334
Q gi|254780761|r 120 FNVQKIAEKNHRLFPLSLP 138 (473)
Q Consensus 120 ~~l~~~l~~~g~~~p~~p~ 138 (473)
.++++ ....|-.|-++|.
T Consensus 76 e~~~~-a~~aGA~FiVSP~ 93 (210)
T PRK07455 76 EDLEE-AIAAGAQFCFTPH 93 (210)
T ss_pred HHHHH-HHHCCCCEEECCC
T ss_conf 99999-9986999998688
No 59
>KOG0144 consensus
Probab=69.63 E-value=3.2 Score=20.74 Aligned_cols=52 Identities=17% Similarity=0.316 Sum_probs=25.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 33223222333223465454310127994046754432100001352689999975
Q gi|254780761|r 188 IKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQL 243 (473)
Q Consensus 188 ~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~ 243 (473)
.|..+.-+++.+| -.+|.|-++.+-.-+....+--.|+.|.+-+-|+.++..
T Consensus 133 sK~~te~evr~iF----s~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika 184 (510)
T KOG0144 133 SKQCTENEVREIF----SRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKA 184 (510)
T ss_pred CCCCCHHHHHHHH----HHHCCCCHHHHEECCCCCCCCEEEEEEEHHHHHHHHHHH
T ss_conf 2102388899999----860762122210064334564169997568989999986
No 60
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=68.66 E-value=8.4 Score=18.09 Aligned_cols=67 Identities=15% Similarity=0.121 Sum_probs=42.1
Q ss_pred CCHHHHHHHHHHCCCCCE-ECCHHHHHHH-HCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 898999999973384418-6698998773-13401367668758995499899999999998729829997
Q gi|254780761|r 4 LSLDLIQRFISIVGSEGI-LDDQKLISPY-LTEERKIYHGTSPLVLLPSCTHEVSQILKLATETNTSITPQ 72 (473)
Q Consensus 4 ~~~~~~~~l~~i~g~~~v-~~d~~~~~~~-~~d~~~~~~~~p~~Vv~P~~~~ev~~iv~~a~~~~i~v~pr 72 (473)
+.+++..+|.++.|.+.+ .+|.+....- +.- -...-.-.++-..+.++|+.+.+++|.+.++|++.-
T Consensus 12 iA~~~~~~l~r~~g~~~~~~~d~~~~~~~~~~~--~~~~D~vi~iS~SG~t~e~~~~~~~ak~~g~~vi~I 80 (87)
T cd04795 12 IAAYFALELLELTGIEVVALIATELEHASLLSL--LRKGDVVIALSYSGRTEELLAALEIAKELGIPVIAI 80 (87)
T ss_pred HHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCC--CCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 999999998751494179989528777646513--789998999979979889999999999879989998
No 61
>TIGR00328 flhB flagellar biosynthetic protein FlhB; InterPro: IPR006136 The flhB and flhA genes constitute an operon called flhB operon on the Salmonella typhimurium chromosome. They, together with FliI and FliH, may constitute the export apparatus of flagellin, the component protein of flagellar filament. The flhB gene encodes a highly hydrophobic polypeptide with several potential membrane-spanning segments, suggesting that it may be an integral membrane protein .; GO: 0009306 protein secretion, 0016020 membrane.
Probab=67.36 E-value=9 Score=17.92 Aligned_cols=12 Identities=17% Similarity=0.288 Sum_probs=6.7
Q ss_pred ECCCCHHHHHHH
Q ss_conf 735556568888
Q gi|254780761|r 431 EHGIGQLHKKRL 442 (473)
Q Consensus 431 eHGiG~~k~~~~ 442 (473)
||||.....|=+
T Consensus 305 en~v~~~e~PpL 316 (352)
T TIGR00328 305 ENNVPIVENPPL 316 (352)
T ss_pred HCCCCEECCCHH
T ss_conf 869114408735
No 62
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein C/molybdopterin-binding protein; Provisional
Probab=66.92 E-value=9.2 Score=17.87 Aligned_cols=19 Identities=5% Similarity=-0.020 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999999999999818
Q gi|254780761|r 407 SLHWNTINNIVYSVVLSYG 425 (473)
Q Consensus 407 ~~~~~~i~~~~~~~~~~~g 425 (473)
...++.+...+..++....
T Consensus 279 ~e~l~~i~p~l~H~~~~l~ 297 (301)
T PRK03604 279 SDALEVLLPALFHAFAMMK 297 (301)
T ss_pred HHHHHHHHHHHHHHHHHHC
T ss_conf 9999999873899999963
No 63
>KOG0430 consensus
Probab=66.62 E-value=9.3 Score=17.83 Aligned_cols=119 Identities=17% Similarity=0.260 Sum_probs=67.3
Q ss_pred EEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCHHHHHHH
Q ss_conf 99549989999999999872982999758877765401048886699976300277421123734551144200222210
Q gi|254780761|r 46 VLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDIDLRSNTIAVDAGINLFNVQKI 125 (473)
Q Consensus 46 Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~~~~vvld~~~mn~il~id~~~~~v~veaGv~~~~l~~~ 125 (473)
=.+|.|.+|+.++++ +.-...+ ..|.|+. |-..-.. .-.-.+|.++.-....++.++.-+++++++++.+..+.
T Consensus 217 W~~P~sl~eL~~~~~--~~~~~~L--v~GNT~~-gv~~r~~-~~~~~Id~~~v~el~~~~~~~~gi~lGa~~sls~~~~~ 290 (1257)
T KOG0430 217 WYWPVSLEELFELKA--NKPDAKL--VAGNTAH-GVYRRSP-DYQKFIDVSGVPELKALNVDDNGLELGAALSLSETMEL 290 (1257)
T ss_pred EECCCCHHHHHHHHH--CCCCEEE--EECCCCC-EEEECCC-CCCCEECHHCCCHHHCCCCCCCCEEECCCCCHHHHHHH
T ss_conf 867566999999985--2864389--8525331-5885168-87613543008412103568774187552439999999
Q ss_pred CCCCCCCCC---------------CCCCCCCCCCCHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCC
Q ss_conf 012322234---------------433432111311222123564000112573334443323466
Q gi|254780761|r 126 AEKNHRLFP---------------LSLPSEKYCHIGGNLATNAGGTAVLSYGNIRHLCLGIEAVLP 176 (473)
Q Consensus 126 l~~~g~~~p---------------~~p~s~~~aTvGG~ia~~~~G~~s~~yG~~~d~v~~~~vv~~ 176 (473)
+...-- .| -.++=...+|+||+|.+.+.+.. .+.|...-++++-+
T Consensus 291 l~~~~~-~~~~~~~~~~~~hl~~~A~~~IRN~ati~GnI~~~~~~~~-----f~SDl~~~l~a~~a 350 (1257)
T KOG0430 291 LRKLVK-RPGFEYFKALWEHLKWFANVQIRNVGTIGGNICTKAQSPE-----FPSDLFILLEALDA 350 (1257)
T ss_pred HHHHHH-CCHHHHHHHHHHHHHHHCCCCEECCCCCCCEEEECCCCCC-----CCHHHHHHHHHHCC
T ss_conf 999870-7288899999999987505000022100341664267877-----85067889876236
No 64
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II; InterPro: IPR011289 Fructose-1,6-bisphosphate (FBP) aldolases reversibly cleave FBP to two triose phosphates, glycerone phophate and D-glyceraldehyde 3-phosphate. They play a key role in both glycolysis (FBP cleavage) and gluconeogenesis (FBP synthesis). These enzymes can be divide into two classes based on their mode of catalysis. Class I FBP aldolases form a Schiff-base intermediate between glycerone phophate and an active site lysine residue, while the class II enzymes use a divalent cation such as Zn(2+) for catalysis . This entry represents class II FBP aldolases found in Gram-positive bacteria, a variety of Gram-negative baceria, and amitochondriate protists. These enzymes are homotetramers where each momomer forms a TIM barrel fold .; GO: 0004332 fructose-bisphosphate aldolase activity, 0008270 zinc ion binding, 0006096 glycolysis, 0030388 fructose 16-bisphosphate metabolic process.
Probab=66.20 E-value=1.7 Score=22.44 Aligned_cols=16 Identities=31% Similarity=0.750 Sum_probs=11.6
Q ss_pred HHHHHHCCCCCCCCCC
Q ss_conf 9988715377788876
Q gi|254780761|r 456 KIKEIFDPAGIMNPGK 471 (473)
Q Consensus 456 ~iK~~~DP~gilNPGk 471 (473)
+=|..|||.-||-|++
T Consensus 303 ~k~~~yDPRK~L~p~~ 318 (339)
T TIGR01859 303 EKKDEYDPRKILGPAR 318 (339)
T ss_pred CCCCCCCCCCCCCHHH
T ss_conf 5887446633353168
No 65
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=66.04 E-value=9.5 Score=17.76 Aligned_cols=79 Identities=11% Similarity=0.029 Sum_probs=46.0
Q ss_pred CCCCC-EEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCCCEEEEECCC-CCCCCCCCCC-CCEEEECCC
Q ss_conf 66875-89954998999999999987298299975887776540104888669997630-0277421123-734551144
Q gi|254780761|r 40 HGTSP-LVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKR-MNRIRDIDLR-SNTIAVDAG 116 (473)
Q Consensus 40 ~~~p~-~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~~~~vvld~~~-mn~il~id~~-~~~v~veaG 116 (473)
...|. +|+|..+.++...+.+.+.+.+++++=. .+++-. +.-|..+... ...+.|++|
T Consensus 8 ~~~plvaIlR~~~~~~a~~~~~al~~~Gi~~iEV-------------------Tl~tp~a~~~I~~l~~~~~~~~~iGAG 68 (206)
T PRK09140 8 TKLPLIAILRGITPDEALAHVGALIEAGFRAIEI-------------------PLNSPDPFDSIAALVKALGDDALIGAG 68 (206)
T ss_pred HHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEE-------------------ECCCCCHHHHHHHHHHHCCCCEEEEEE
T ss_conf 8599799995899999999999999869988999-------------------179976999999999967986599862
Q ss_pred CC--HHHHHHHCCCCCCCCCCCCC
Q ss_conf 20--02222100123222344334
Q gi|254780761|r 117 IN--LFNVQKIAEKNHRLFPLSLP 138 (473)
Q Consensus 117 v~--~~~l~~~l~~~g~~~p~~p~ 138 (473)
.. -.++.+.. ..|-.|-++|.
T Consensus 69 TVlt~e~~~~ai-~aGA~FiVSP~ 91 (206)
T PRK09140 69 TVLSPEQVDRLA-DAGGRLIVTPN 91 (206)
T ss_pred ECCCHHHHHHHH-HCCCCEEECCC
T ss_conf 046799999999-85999999999
No 66
>smart00362 RRM_2 RNA recognition motif.
Probab=63.90 E-value=4.4 Score=19.85 Aligned_cols=55 Identities=22% Similarity=0.294 Sum_probs=39.5
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 013322322233322346545431012799404675443210000135268999997510
Q gi|254780761|r 186 KLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 186 ~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
..|.+.+--||.++| +.+|-|+++.+..-+ ...+..+++.|.+.++|.+++....
T Consensus 6 nlp~~~t~~~l~~~f----~~~G~v~~i~~~~~~-~~~~g~afV~f~~~~~a~~Ai~~~~ 60 (72)
T smart00362 6 NLPPDVTEEDLKELF----SKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALN 60 (72)
T ss_pred CCCCCCCHHHHHHHH----HHHCCCCEEEEECCC-CCCCCEEEEEECCHHHHHHHHHHHC
T ss_conf 899989899999999----985977413562267-6778717999789999999999978
No 67
>smart00360 RRM RNA recognition motif.
Probab=63.64 E-value=5.8 Score=19.10 Aligned_cols=55 Identities=25% Similarity=0.277 Sum_probs=38.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC-CCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 1332232223332234654543101279940467-5443210000135268999997510
Q gi|254780761|r 187 LIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPY-RTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 187 ~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~-p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
.|.+.+--||.++| +.+|-|.++.+...+. .+.+...++.|.+.++|..++....
T Consensus 4 lp~~~t~~~l~~~f----~~~G~v~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~ 59 (71)
T smart00360 4 LPPDVTEEELRELF----SKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALN 59 (71)
T ss_pred CCCCCCHHHHHHHH----HHCCCEEEEEEECCCCCCCCCCEEEEEECCHHHHHHHHHHHC
T ss_conf 89999899999999----875998999860158888461409999899999999999849
No 68
>PRK08904 consensus
Probab=62.40 E-value=10 Score=17.52 Aligned_cols=75 Identities=16% Similarity=0.096 Sum_probs=42.8
Q ss_pred CEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCCCEEEEECCC-CCCCCCCCCCCCEEEECCCCCH--H
Q ss_conf 589954998999999999987298299975887776540104888669997630-0277421123734551144200--2
Q gi|254780761|r 44 PLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKR-MNRIRDIDLRSNTIAVDAGINL--F 120 (473)
Q Consensus 44 ~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~~~~vvld~~~-mn~il~id~~~~~v~veaGv~~--~ 120 (473)
..|++..+.++...+.+.+.+.+++++=.. +.+.. +.-|-.+..+-..+.|++|..+ .
T Consensus 13 ipVir~~~~~~a~~~a~al~~~Gi~~iEiT-------------------lrtp~a~~~i~~l~~~~p~~~vGaGTVl~~e 73 (207)
T PRK08904 13 VPVMAIDDLSTAVDLSRALVEGGIPTLEIT-------------------LRTPVGLDAIRLIAKEVPNAIVGAGTVTNPE 73 (207)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCEEEEE-------------------CCCCHHHHHHHHHHHHCCCCEEEEEECCCHH
T ss_conf 999976999999999999998799889995-------------------7991399999999986898768553136899
Q ss_pred HHHHHCCCCCCCCCCCCC
Q ss_conf 222100123222344334
Q gi|254780761|r 121 NVQKIAEKNHRLFPLSLP 138 (473)
Q Consensus 121 ~l~~~l~~~g~~~p~~p~ 138 (473)
++++ ....|-.|-++|.
T Consensus 74 ~~~~-a~~aGA~FiVSP~ 90 (207)
T PRK08904 74 QLKA-VEDAGAVFAISPG 90 (207)
T ss_pred HHHH-HHHCCCCEEECCC
T ss_conf 9999-9984999998489
No 69
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=62.36 E-value=6.7 Score=18.73 Aligned_cols=57 Identities=21% Similarity=0.260 Sum_probs=40.9
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 0133223222333223465454310127994046754432100001352689999975102
Q gi|254780761|r 186 KLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQK 246 (473)
Q Consensus 186 ~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~~ 246 (473)
..|.+.+--+|.++| ..+|-|..+.+...+....+..+++.|.+.++|..++.....
T Consensus 6 nlp~~~~~~~l~~~f----~~~G~i~~v~~~~~~~~~~~~~afV~f~~~~~a~~a~~~~~~ 62 (74)
T cd00590 6 NLPPDVTEEDLRELF----SKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNG 62 (74)
T ss_pred CCCCCCCHHHHHHHH----HHCCCEEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHCC
T ss_conf 899979899999999----842988998775136774043299998999999999998199
No 70
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B; InterPro: IPR013484 MoaB is thought to be involved in molybdopterin biosynthesis, though its exact role is not known. Structural studies of this polypeptide suggest that it may play a role in substrate-shuttling during biosynthesis . MoaB was capable of binding GTP, and it was suggested that the putative active site could also bind precursor Z and/or molybdenum. Potential protein interaction domains were also found, implying that MoaB may play a transport and/or storage role in molybdopterin biosynthesis. .
Probab=61.10 E-value=6.7 Score=18.70 Aligned_cols=41 Identities=10% Similarity=0.179 Sum_probs=20.1
Q ss_pred CCCCEEEECCCHHHHHHHHH-HHHHCCCCEEEECCCCCCCCC
Q ss_conf 68758995499899999999-998729829997588777654
Q gi|254780761|r 41 GTSPLVLLPSCTHEVSQILK-LATETNTSITPQGGNTGLVGG 81 (473)
Q Consensus 41 ~~p~~Vv~P~~~~ev~~iv~-~a~~~~i~v~prGggt~~~G~ 81 (473)
....=++.|.+.+++.++|+ +=.+..|-|+.-.||||++|-
T Consensus 37 ~la~R~iv~DD~y~iRA~Vs~WIAd~~VqVil~TGGTGfTgR 78 (163)
T TIGR02667 37 RLAERAIVKDDIYQIRAQVSEWIADPAVQVILITGGTGFTGR 78 (163)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCC
T ss_conf 321143267448999999987348986556887188234677
No 71
>TIGR02707 butyr_kinase butyrate kinase; InterPro: IPR011245 This group represents bacterial butyrate kinase, an enzyme that facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate . The final steps in butyrate synthesis by anaerobic bacteria can occur via butyrate kinase and phosphotransbutyrylase or via butyryl-CoA:acetate CoA-transferase, the latter providing the dominant route for butyrate formation in human colonic bacteria .; GO: 0005524 ATP binding, 0047761 butyrate kinase activity, 0016310 phosphorylation, 0005737 cytoplasm.
Probab=59.93 E-value=9.5 Score=17.76 Aligned_cols=35 Identities=17% Similarity=0.320 Sum_probs=16.7
Q ss_pred CCHHHHHHHHHHH---HHHHHHHHHCCCCEEEEEEEECC
Q ss_conf 1001312899999---99999886348722899998449
Q gi|254780761|r 352 ISVPIGQIPSFLQ---EVKKSVSSIFPKTRIGLFGHIGD 387 (473)
Q Consensus 352 vavp~~~l~~~~~---~v~~~l~~~~~~~~~~~~gH~g~ 387 (473)
-++|..+|.+++- ...+.+.+.- -.+.++.+|.|.
T Consensus 215 G~LP~~dlv~lCySGkyT~~E~kKkI-~G~GGl~ayLGT 252 (353)
T TIGR02707 215 GTLPLGDLVDLCYSGKYTKEEMKKKI-VGKGGLVAYLGT 252 (353)
T ss_pred CCCCHHHHHHHHHCCCHHHHHHHHHH-CCCCCCEEECCC
T ss_conf 65658889998727610388999985-267453325455
No 72
>TIGR00649 MG423 conserved hypothetical protein; InterPro: IPR004613 This is a family of conserved hypothetical proteins, the members of which contain an ATP-binding domain at the N-terminal end of the protein. It is possibly part of a superfamily of beta-lactmases..
Probab=58.88 E-value=4.4 Score=19.86 Aligned_cols=139 Identities=13% Similarity=0.114 Sum_probs=71.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCC-EEEECCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCCC-EEEECCCCCH
Q ss_conf 875899549989999999999872982-99975887776540104888669997630027742112373-4551144200
Q gi|254780761|r 42 TSPLVLLPSCTHEVSQILKLATETNTS-ITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDIDLRSN-TIAVDAGINL 119 (473)
Q Consensus 42 ~p~~Vv~P~~~~ev~~iv~~a~~~~i~-v~prGggt~~~G~~~p~~~~~~vvld~~~mn~il~id~~~~-~v~veaGv~~ 119 (473)
.-..|+-=+=+|.+=+|-.++++++.| |. ||.++=+.+ =++++.=-.++..+- --++.++...
T Consensus 72 vkgI~~tHGH~DHIGav~yL~~~~~~~PiY----Gt~lt~~L~-----------~~ki~~E~~l~~~~~yl~~~~~~~~~ 136 (593)
T TIGR00649 72 VKGIVITHGHEDHIGAVPYLLHQYGFPPIY----GTPLTIALI-----------KSKIKAEHGLNVRTDYLQEINEGEPV 136 (593)
T ss_pred EEEEEECCCCCCCCCHHHHHHHHCCCCCEE----CCHHHHHHH-----------HHHHHHHHCCCCCCCHHHEECCCCEE
T ss_conf 678897087100012288898656888240----437899999-----------99886542002257502101589608
Q ss_pred HH--HHHHCCCCCCCCCCC-CCCCCCCCCHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCEEEE----EECCCCCC
Q ss_conf 22--221001232223443-343211131122212356400011257333444332346665302112----20133223
Q gi|254780761|r 120 FN--VQKIAEKNHRLFPLS-LPSEKYCHIGGNLATNAGGTAVLSYGNIRHLCLGIEAVLPTGDIWNGM----HKLIKDNS 192 (473)
Q Consensus 120 ~~--l~~~l~~~g~~~p~~-p~s~~~aTvGG~ia~~~~G~~s~~yG~~~d~v~~~~vv~~~G~i~~~~----~~~~~~~~ 192 (473)
.- +....=..- ...|+ |+|+. +=+=||.|.|+-++ -..+..+.
T Consensus 137 ~~~~i~~~~~eFi-r~tHSIPdS~~-----------------------------~a~hTp~G~IVy~~DFKfD~~p~~~~ 186 (593)
T TIGR00649 137 QVGKIENFAIEFI-RVTHSIPDSVG-----------------------------LALHTPEGSIVYAGDFKFDNTPVIGE 186 (593)
T ss_pred EEEECCCEEEEEE-EEEECCCCCEE-----------------------------EEEECCCCEEEEECCEEEECCCCCCC
T ss_conf 8875064388457-71432412218-----------------------------88976983499832545537778898
Q ss_pred CCCCCCCC-CCCCCCCCCEEEEEEEECCCCCCCC
Q ss_conf 22233322-3465454310127994046754432
Q gi|254780761|r 193 RYDIRDLL-IGSEGTLGIITGAVLRLLPYRTGKQ 225 (473)
Q Consensus 193 G~dl~~l~-~GseGtlGiITevtlrl~p~p~~~~ 225 (473)
-+||.++- +|.+|+|..|++.|.-=.+.|..+-
T Consensus 187 ~~Dl~~~~~~G~~GVL~LlsdsT~~~er~~g~Tp 220 (593)
T TIGR00649 187 PPDLNRIAELGKKGVLLLLSDSTNVEERNEGKTP 220 (593)
T ss_pred CCCHHHHHHHHCCCCEEEEECCEECCCCCCCCCC
T ss_conf 6007999997328848999502022675788687
No 73
>TIGR03157 cas_Csc2 CRISPR-associated protein Csc2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family is a CRISPR-associated (Cas) family strictly associated with the Cyano subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. This family is designated Csc2 for CRISPR/Cas Subtype Cyano protein 2, as it is often the second gene upstream of the core cas genes, cas3-cas4-cas1-cas2.
Probab=56.66 E-value=6.5 Score=18.79 Aligned_cols=12 Identities=17% Similarity=0.426 Sum_probs=4.4
Q ss_pred CHHHHHHHHHHH
Q ss_conf 789999999998
Q gi|254780761|r 447 EPTEIKIMKKIK 458 (473)
Q Consensus 447 ~~~~~~~l~~iK 458 (473)
+++-.++|.++|
T Consensus 270 ~~~~~~lL~~~~ 281 (282)
T TIGR03157 270 GDEVVKLLTDVK 281 (282)
T ss_pred HHHHHHHHHHCC
T ss_conf 678999887515
No 74
>pfam01081 Aldolase KDPG and KHG aldolase. This family includes the following members: 4-hydroxy-2-oxoglutarate aldolase (KHG-aldolase) Phospho-2-dehydro-3-deoxygluconate aldolase (KDPG-aldolase)
Probab=55.01 E-value=15 Score=16.55 Aligned_cols=77 Identities=13% Similarity=0.031 Sum_probs=44.3
Q ss_pred CCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCCCEEEEECCC-CCCCCCCCCCCCEEEECCCCC-HH
Q ss_conf 7589954998999999999987298299975887776540104888669997630-027742112373455114420-02
Q gi|254780761|r 43 SPLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKR-MNRIRDIDLRSNTIAVDAGIN-LF 120 (473)
Q Consensus 43 p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~~~~vvld~~~-mn~il~id~~~~~v~veaGv~-~~ 120 (473)
-.+|++..+.++..++.+.+.+.+++++=.. +++.. ++-|..+..+-..+.+++|.. ..
T Consensus 10 iipV~r~~~~~~a~~~~~al~~~Gi~~iEiT-------------------l~t~~a~~~I~~l~~~~p~~~iGaGTV~~~ 70 (196)
T pfam01081 10 IVPVIVIKDKEDALPLAEALAAGGIRVLEVT-------------------LRTPCALDAIRLLRKNRPDALVGAGTVLNA 70 (196)
T ss_pred EEEEEECCCHHHHHHHHHHHHHCCCCEEEEE-------------------CCCHHHHHHHHHHHHHCCCCEEEEEECCCH
T ss_conf 7999977999999999999998799889994-------------------798279999999996499967999837689
Q ss_pred HHHHHCCCCCCCCCCCCC
Q ss_conf 222100123222344334
Q gi|254780761|r 121 NVQKIAEKNHRLFPLSLP 138 (473)
Q Consensus 121 ~l~~~l~~~g~~~p~~p~ 138 (473)
+--+.+...|-.|-++|.
T Consensus 71 e~~~~a~~aGA~FivSP~ 88 (196)
T pfam01081 71 QQLAEAAEAGAQFVVSPG 88 (196)
T ss_pred HHHHHHHHCCCCEEECCC
T ss_conf 999999974999999787
No 75
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=54.98 E-value=15 Score=16.55 Aligned_cols=76 Identities=11% Similarity=0.025 Sum_probs=43.6
Q ss_pred CCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCCCEEEEECCC-CCCCCCCC---CCCCEEEECCCCC
Q ss_conf 7589954998999999999987298299975887776540104888669997630-02774211---2373455114420
Q gi|254780761|r 43 SPLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKR-MNRIRDID---LRSNTIAVDAGIN 118 (473)
Q Consensus 43 p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~~~~vvld~~~-mn~il~id---~~~~~v~veaGv~ 118 (473)
-.+|+|-.+.++...+.+.+.+.+++++=. .+++.+ ++-|..+. .+..-+.+++|..
T Consensus 15 iiaVlr~~~~~~a~~~~~al~~gGi~~iEI-------------------Tl~tp~a~~~i~~l~~~~~~~p~~~iGaGTV 75 (209)
T PRK06552 15 LVAVVRGESKEEALKISLAVIKGGIKAIEV-------------------TYTNPFASEVIKELVERYKDDPEVLIGAGTV 75 (209)
T ss_pred EEEEEECCCHHHHHHHHHHHHHCCCCEEEE-------------------ECCCCCHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 799997289999999999999879988999-------------------6789759999999999817799818988727
Q ss_pred --HHHHHHHCCCCCCCCCCCCC
Q ss_conf --02222100123222344334
Q gi|254780761|r 119 --LFNVQKIAEKNHRLFPLSLP 138 (473)
Q Consensus 119 --~~~l~~~l~~~g~~~p~~p~ 138 (473)
..++++..+ .|-.|-++|.
T Consensus 76 ~~~e~~~~a~~-aGA~FiVSP~ 96 (209)
T PRK06552 76 LDAVTARQAIL-AGAQFIVSPS 96 (209)
T ss_pred CCHHHHHHHHH-CCCCEEECCC
T ss_conf 48999999998-5998897699
No 76
>PRK00448 polC DNA polymerase III PolC; Validated
Probab=54.83 E-value=4.8 Score=19.63 Aligned_cols=21 Identities=14% Similarity=0.238 Sum_probs=17.4
Q ss_pred HHHHHHHHHHCCCCEEEECCC
Q ss_conf 999999998729829997588
Q gi|254780761|r 55 VSQILKLATETNTSITPQGGN 75 (473)
Q Consensus 55 v~~iv~~a~~~~i~v~prGgg 75 (473)
+++.|++|+++++||=|||++
T Consensus 867 v~dlV~~s~~~Gy~VGpRGSv 887 (1436)
T PRK00448 867 SQKLVKKSLEDGYLVGSRGSV 887 (1436)
T ss_pred HHHHHHHHHHCCCEECCCCCH
T ss_conf 999999998679724788638
No 77
>PRK09532 DNA polymerase III subunit alpha; Reviewed
Probab=53.69 E-value=7.6 Score=18.37 Aligned_cols=14 Identities=36% Similarity=0.489 Sum_probs=5.9
Q ss_pred HHHHHHHCCCCEEE
Q ss_conf 99999872982999
Q gi|254780761|r 58 ILKLATETNTSITP 71 (473)
Q Consensus 58 iv~~a~~~~i~v~p 71 (473)
++++|.+.++|++.
T Consensus 190 L~~lA~~~~iplVA 203 (874)
T PRK09532 190 IVKIARELGIKIVA 203 (874)
T ss_pred HHHHHHHHCCCEEE
T ss_conf 99999981999886
No 78
>TIGR01235 pyruv_carbox pyruvate carboxylase; InterPro: IPR005930 In the postabsorptive state, blood glucose concentration is kept constant by a combination of glycogenolysis and gluconeogenesis. During prolonged fasting, when hepatic glycogen is exhausted, gluconeogenesis becomes the only source of plasma glucose. Gluconeogenesis (the production of new glucose molecules) occurs mainly in liver and, to a small extent, in kidneys. Pyruvate carboxylase (6.4.1.1 from EC), a member of the biotin-dependent enzyme family, catalyses the ATP-dependent carboxylation of pyruvate to oxaloacetate, thus playing a crucial role in gluconeogenesis. ATP + pyruvate + HCO3- = ADP + phosphate + oxaloacetate Most well characterised forms of active enzyme consist of four identical subunits arranged in a tetrahedron-like structure. Each subunit contains three functional domains: the biotin carboxylation domain, the transcarboxylation domain and the biotin carboxyl carrier domain.; GO: 0004736 pyruvate carboxylase activity, 0006094 gluconeogenesis, 0005737 cytoplasm.
Probab=53.61 E-value=16 Score=16.41 Aligned_cols=32 Identities=9% Similarity=0.126 Sum_probs=26.1
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 68758995499899999999998729829997
Q gi|254780761|r 41 GTSPLVLLPSCTHEVSQILKLATETNTSITPQ 72 (473)
Q Consensus 41 ~~p~~Vv~P~~~~ev~~iv~~a~~~~i~v~pr 72 (473)
++|.+=-.|.=.+++.+++++|+++|.||+.-
T Consensus 131 GvPvvPgt~Gp~~t~eev~~f~~~~GYPvi~K 162 (1169)
T TIGR01235 131 GVPVVPGTDGPVETLEEVLDFAKAIGYPVIIK 162 (1169)
T ss_pred CCCEECCCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 88763688687525999999997569958987
No 79
>TIGR01824 PabB-clade2 para-aminobenzoate synthase component I; InterPro: IPR010118 This clade of sequences is more closely related to TrpE (anthranilate synthase, IPR005256 from INTERPRO, IPR010116 from INTERPRO, IPR005257 from INTERPRO) than to the better characterised group of PabB enzymes (IPR005802 from INTERPRO, IPR010117 from INTERPRO). This clade includes one characterised enzyme from Lactococcus and the conserved function across the clade is supported by these pieces of evidence: 1) all genomes with a member in this clade also have a separate TrpE gene, 2) none of these genomes contain an apparent PabB from any of the other PabB clades, 3) none of these sequences are found in a region of the genome in association with other Trp biosynthesis genes, 4) all of these genomes apparently contain most if not all of the steps of the folate biosynthetic pathway (for which PABA is a precursor). Many of the sequences are annotated as TrpE enzymes, however, we believe that all members of this clade are, in fact, PabB. The sequences from Bacillus halodurans and B.subtilus, are also likely to be PabB enzymes, but are too closely related to TrpE to be separated at this time..
Probab=52.21 E-value=4.8 Score=19.65 Aligned_cols=38 Identities=18% Similarity=0.330 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC-C-CEEEEEEE
Q ss_conf 013128999999999988634872289999844-9-86999984
Q gi|254780761|r 354 VPIGQIPSFLQEVKKSVSSIFPKTRIGLFGHIG-D-GNIHFNVF 395 (473)
Q Consensus 354 vp~~~l~~~~~~v~~~l~~~~~~~~~~~~gH~g-~-g~lh~~~~ 395 (473)
.|-.+.=++| +.|+..-.+..++.+|.++ | |++-++|.
T Consensus 290 APK~r~m~iI----~eLEp~~Rg~Y~Gs~G~~~~drG~~~l~i~ 329 (373)
T TIGR01824 290 APKVRAMEII----EELEPQRRGPYTGSVGWIDADRGDADLNIL 329 (373)
T ss_pred CCHHHHHHHH----HHHCCCCCCCCEEEEEEEECCCCCCCCHHH
T ss_conf 9727899999----986378987541238888558675112121
No 80
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein; InterPro: IPR013456 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the D-xylose ABC transporter substrate-binding protein which is a periplasmic (when in Gram-negative bacteria) binding protein for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter..
Probab=50.97 E-value=17 Score=16.15 Aligned_cols=68 Identities=15% Similarity=0.163 Sum_probs=46.6
Q ss_pred HHHHHHHHHHCCCCCEECCHHH--HHHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 8999999973384418669899--8773134013676687589954998999999999987298299975
Q gi|254780761|r 6 LDLIQRFISIVGSEGILDDQKL--ISPYLTEERKIYHGTSPLVLLPSCTHEVSQILKLATETNTSITPQG 73 (473)
Q Consensus 6 ~~~~~~l~~i~g~~~v~~d~~~--~~~~~~d~~~~~~~~p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prG 73 (473)
.+++.+-.+-+|+..+..|... ...-|.=++-+-++.-..|+.|-+.+-+..+++-|.+.+|+|+.|=
T Consensus 17 ~~~~~~~~E~~gAK~~~~~A~~~~~~Q~S~iE~li~~gv~vlvi~~~~~~vl~~~~~~A~~~GI~V~aYD 86 (307)
T TIGR02634 17 RDIFVAKAESLGAKVFVQSANGNEAKQLSQIENLIARGVDVLVIIPYNGEVLSNAVQEAKKEGIKVLAYD 86 (307)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEE
T ss_conf 9999999863498289852677402347889999867980999953686037889999987798088730
No 81
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=50.18 E-value=14 Score=16.77 Aligned_cols=15 Identities=20% Similarity=0.195 Sum_probs=8.3
Q ss_pred EEEEEECCCCCCCCC
Q ss_conf 279940467544321
Q gi|254780761|r 212 GAVLRLLPYRTGKQV 226 (473)
Q Consensus 212 evtlrl~p~p~~~~~ 226 (473)
++.+.|.|-|.+-..
T Consensus 103 ~v~lsL~~NPSHLEa 117 (265)
T cd02016 103 KVHLSLAPNPSHLEA 117 (265)
T ss_pred EEEEEECCCCCCCEE
T ss_conf 899997589764167
No 82
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=50.06 E-value=18 Score=16.06 Aligned_cols=13 Identities=31% Similarity=0.358 Sum_probs=5.1
Q ss_pred CHHHHHHHHHHHC
Q ss_conf 5268999997510
Q gi|254780761|r 233 SLEQALQLLQLSQ 245 (473)
Q Consensus 233 ~~~~a~~~~~~~~ 245 (473)
+....++++..+.
T Consensus 139 s~~~~vEllKsll 151 (363)
T COG1377 139 SLQTLVELLKSLL 151 (363)
T ss_pred HHHHHHHHHHHHH
T ss_conf 5889999999999
No 83
>PRK08104 consensus
Probab=49.37 E-value=18 Score=15.99 Aligned_cols=76 Identities=14% Similarity=0.103 Sum_probs=44.7
Q ss_pred CCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCCCEEEEECC-CCCCCCCCCCCCCEEEECCCCC--H
Q ss_conf 758995499899999999998729829997588777654010488866999763-0027742112373455114420--0
Q gi|254780761|r 43 SPLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIK-RMNRIRDIDLRSNTIAVDAGIN--L 119 (473)
Q Consensus 43 p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~~~~vvld~~-~mn~il~id~~~~~v~veaGv~--~ 119 (473)
-..|++-.+.++...+.+.+.+.+++++=.. +.+. .++-|-.+..+-.-+.|++|.. .
T Consensus 17 iipVir~~~~~~a~~la~al~~gGi~~iEiT-------------------lrt~~a~~~I~~l~~~~p~~~vGaGTV~~~ 77 (212)
T PRK08104 17 VVPVIVINKLEHAVPLAKALVAGGVRVLEVT-------------------LRTPCALEAIRAIAKEVPEAIVGAGTVLNP 77 (212)
T ss_pred EEEEEECCCHHHHHHHHHHHHHCCCCEEEEE-------------------CCCCHHHHHHHHHHHHCCCCEEEEEECCCH
T ss_conf 6899977999999999999998799889996-------------------888149999999998689856854202679
Q ss_pred HHHHHHCCCCCCCCCCCCC
Q ss_conf 2222100123222344334
Q gi|254780761|r 120 FNVQKIAEKNHRLFPLSLP 138 (473)
Q Consensus 120 ~~l~~~l~~~g~~~p~~p~ 138 (473)
.++++ ....|-.|-++|.
T Consensus 78 e~~~~-ai~aGA~FiVSP~ 95 (212)
T PRK08104 78 QQLAE-VTEAGAQFAISPG 95 (212)
T ss_pred HHHHH-HHHCCCCEEECCC
T ss_conf 99999-9985999998489
No 84
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=49.22 E-value=18 Score=15.97 Aligned_cols=76 Identities=18% Similarity=0.104 Sum_probs=43.6
Q ss_pred CEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCCCEEEEECCC-CCCCCCCCCCCCEEEECCCCCH-HH
Q ss_conf 589954998999999999987298299975887776540104888669997630-0277421123734551144200-22
Q gi|254780761|r 44 PLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKR-MNRIRDIDLRSNTIAVDAGINL-FN 121 (473)
Q Consensus 44 ~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~~~~vvld~~~-mn~il~id~~~~~v~veaGv~~-~~ 121 (473)
..|++..+.++...+.+.+.+.+++++=.. +.+.. +.-|..+-.+-..+.|++|..+ .+
T Consensus 18 ipVlr~~~~~~a~~~~~al~~gGi~~iEIT-------------------lrt~~a~~~I~~l~~~~p~~~vGaGTVl~~e 78 (212)
T PRK06015 18 IPVLLIDDVEHAVPLARALARGGLPAIEIT-------------------LRTPAALDAIRAVAAEVEEAIVGAGTILNAK 78 (212)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCEEEEE-------------------CCCCCHHHHHHHHHHHCCCCEEEEEECCCHH
T ss_conf 999977999999999999998799889996-------------------8995199999999986999679542115699
Q ss_pred HHHHCCCCCCCCCCCCC
Q ss_conf 22100123222344334
Q gi|254780761|r 122 VQKIAEKNHRLFPLSLP 138 (473)
Q Consensus 122 l~~~l~~~g~~~p~~p~ 138 (473)
--+.....|-.|-++|.
T Consensus 79 ~~~~a~~aGA~FiVSP~ 95 (212)
T PRK06015 79 QFEDAAKAGSRFIVSPG 95 (212)
T ss_pred HHHHHHHCCCCEEECCC
T ss_conf 99999984998998589
No 85
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=48.74 E-value=15 Score=16.44 Aligned_cols=21 Identities=14% Similarity=0.330 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHCCCCCCCCC
Q ss_conf 999999998871537778887
Q gi|254780761|r 450 EIKIMKKIKEIFDPAGIMNPG 470 (473)
Q Consensus 450 ~~~~l~~iK~~~DP~gilNPG 470 (473)
.++.+.+.-..++|.++|..|
T Consensus 376 ~l~~l~~~L~~Lsp~~~L~RG 396 (440)
T COG1570 376 RLEALVEQLESLSPLATLARG 396 (440)
T ss_pred HHHHHHHHHHCCCHHHHHHCC
T ss_conf 999999999717914566474
No 86
>pfam02601 Exonuc_VII_L Exonuclease VII, large subunit. This family consist of exonuclease VII, large subunit EC:3.1.11.6 This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. This exonuclease VII enzyme is composed of one large subunit and 4 small ones.
Probab=47.73 E-value=17 Score=16.19 Aligned_cols=19 Identities=11% Similarity=0.244 Sum_probs=11.0
Q ss_pred HHHHHHHHHHCCCCCCCCC
Q ss_conf 9999998871537778887
Q gi|254780761|r 452 KIMKKIKEIFDPAGIMNPG 470 (473)
Q Consensus 452 ~~l~~iK~~~DP~gilNPG 470 (473)
..+.+.=+.+||.++|..|
T Consensus 240 ~~l~~~L~~lsP~~vL~RG 258 (295)
T pfam02601 240 ENLTAQLKALSPLKTLKRG 258 (295)
T ss_pred HHHHHHHHHCCHHHHHHCC
T ss_conf 9999999967967798486
No 87
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=47.45 E-value=20 Score=15.80 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=32.3
Q ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECC
Q ss_conf 36766875899549989999999999872982999758
Q gi|254780761|r 37 KIYHGTSPLVLLPSCTHEVSQILKLATETNTSITPQGG 74 (473)
Q Consensus 37 ~~~~~~p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGg 74 (473)
.+-+++-..||.|.+.+.+..+++.|++.+|||+..-.
T Consensus 77 ~I~qgvdaIiv~p~D~~al~~~v~~A~~aGIPVI~~D~ 114 (330)
T PRK10355 77 MINRGVDVLVIIPYNGQVLSNVIKEAKQEGIKVLAYDR 114 (330)
T ss_pred HHHCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 99859999999699878889999999987994999578
No 88
>COG0019 LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism]
Probab=47.41 E-value=19 Score=15.85 Aligned_cols=60 Identities=13% Similarity=0.198 Sum_probs=28.8
Q ss_pred HHHHHHHCCCCCEECCHHHHHHHHCCCCCCCCC---CCCEEEECCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 999997338441866989987731340136766---875899549989999999999872982999
Q gi|254780761|r 9 IQRFISIVGSEGILDDQKLISPYLTEERKIYHG---TSPLVLLPSCTHEVSQILKLATETNTSITP 71 (473)
Q Consensus 9 ~~~l~~i~g~~~v~~d~~~~~~~~~d~~~~~~~---~p~~Vv~P~~~~ev~~iv~~a~~~~i~v~p 71 (473)
+.+|.+..|......|...+......+...+.. .....++.-+.-. |+++..+.+.-+-.
T Consensus 18 ~~~l~~~~gTP~yvyd~~~l~~~~~~~~~a~~~~~~~i~yAvKAn~~~~---il~~l~~~g~g~Dv 80 (394)
T COG0019 18 LPALAEEFGTPVYVYDEATLRRNARELKSAFPGSGAKVFYAVKANSNPA---ILRLLAEEGSGFDV 80 (394)
T ss_pred HHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHH---HHHHHHHHCCCCEE
T ss_conf 7878503699889984799999999999861567815999974689879---99999973888653
No 89
>PRK06658 consensus
Probab=47.27 E-value=8.6 Score=18.04 Aligned_cols=21 Identities=24% Similarity=0.533 Sum_probs=17.4
Q ss_pred HHHHHHHHHHCCCCEEE-ECCC
Q ss_conf 99999999872982999-7588
Q gi|254780761|r 55 VSQILKLATETNTSITP-QGGN 75 (473)
Q Consensus 55 v~~iv~~a~~~~i~v~p-rGgg 75 (473)
|.+++++|.+++|||=| ||++
T Consensus 344 V~D~i~~Ak~~gI~vGpGRGSa 365 (1145)
T PRK06658 344 VWDFIKWAKDNDIPVGPGRGSG 365 (1145)
T ss_pred HHHHHHHHHHCCCEECCCCCCH
T ss_conf 9999999996682227887746
No 90
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=46.83 E-value=20 Score=15.74 Aligned_cols=30 Identities=17% Similarity=0.351 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCCE
Q ss_conf 9999999999872982999758877765401
Q gi|254780761|r 53 HEVSQILKLATETNTSITPQGGNTGLVGGQI 83 (473)
Q Consensus 53 ~ev~~iv~~a~~~~i~v~prGggt~~~G~~~ 83 (473)
|.+.+.++.+-+.+=.|+..|-.-+ .||+.
T Consensus 39 ~Ai~~al~~~m~~d~~v~~~GeDv~-~GG~f 68 (355)
T PTZ00182 39 QAINSALDIALSKDPKTVLFGEDVA-FGGVF 68 (355)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCC-CCCHH
T ss_conf 9999999999965998899847736-67666
No 91
>PRK07135 dnaE DNA polymerase III DnaE; Validated
Probab=46.54 E-value=9 Score=17.91 Aligned_cols=21 Identities=38% Similarity=0.575 Sum_probs=18.4
Q ss_pred HHHHHHHHHHCCCCEEE-ECCC
Q ss_conf 99999999872982999-7588
Q gi|254780761|r 55 VSQILKLATETNTSITP-QGGN 75 (473)
Q Consensus 55 v~~iv~~a~~~~i~v~p-rGgg 75 (473)
|++++++|.+++|||=| ||++
T Consensus 274 V~DfI~~Ak~~gI~VGPGRGSa 295 (987)
T PRK07135 274 IWDILKWARKNKISIGPGRGSA 295 (987)
T ss_pred HHHHHHHHHHCCCEECCCCCCH
T ss_conf 9999998755494546887737
No 92
>TIGR00416 sms DNA repair protein RadA; InterPro: IPR004504 RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0006281 DNA repair.
Probab=46.53 E-value=20 Score=15.71 Aligned_cols=31 Identities=23% Similarity=0.311 Sum_probs=15.1
Q ss_pred EEECCCHHHHH----HHHHHHHHCCCCEEEECCCC
Q ss_conf 99549989999----99999987298299975887
Q gi|254780761|r 46 VLLPSCTHEVS----QILKLATETNTSITPQGGNT 76 (473)
Q Consensus 46 Vv~P~~~~ev~----~iv~~a~~~~i~v~prGggt 76 (473)
=--|+|..||. .++|+|...+|+++.-|.=|
T Consensus 214 ~SaPGSVsQVRE~t~~Lmr~AKt~~iaifiVGHVT 248 (481)
T TIGR00416 214 SSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVT 248 (481)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEC
T ss_conf 25888423888999999876521686579970043
No 93
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=45.90 E-value=19 Score=15.89 Aligned_cols=21 Identities=14% Similarity=0.371 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHCCCCCCCCC
Q ss_conf 999999998871537778887
Q gi|254780761|r 450 EIKIMKKIKEIFDPAGIMNPG 470 (473)
Q Consensus 450 ~~~~l~~iK~~~DP~gilNPG 470 (473)
.++.+.+.=+.+||.++|..|
T Consensus 379 ~l~~~~~~L~~lsP~~~L~RG 399 (443)
T PRK00286 379 RLEALAQQLEALSPLATLARG 399 (443)
T ss_pred HHHHHHHHHHHCCHHHHHCCC
T ss_conf 999999999958957887495
No 94
>KOG2499 consensus
Probab=45.81 E-value=21 Score=15.64 Aligned_cols=30 Identities=23% Similarity=0.243 Sum_probs=12.5
Q ss_pred CCCCCCCC-CCCCCCEEEEEEEECCCCCCCC
Q ss_conf 33322346-5454310127994046754432
Q gi|254780761|r 196 IRDLLIGS-EGTLGIITGAVLRLLPYRTGKQ 225 (473)
Q Consensus 196 l~~l~~Gs-eGtlGiITevtlrl~p~p~~~~ 225 (473)
|.+|..|+ .|-+-+|+.+++.=.|.-.++.
T Consensus 155 fSqLv~~d~~~~~~~~~~~~I~D~PrF~hRG 185 (542)
T KOG2499 155 FSQLVWGDSIGGLFMIATAYIQDKPRFGHRG 185 (542)
T ss_pred HHHHHEECCCCCEEEEEEEEEECCCCCCCCC
T ss_conf 8877412068966986002674267776342
No 95
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=45.23 E-value=21 Score=15.59 Aligned_cols=13 Identities=15% Similarity=0.577 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 8999999999887
Q gi|254780761|r 448 PTEIKIMKKIKEI 460 (473)
Q Consensus 448 ~~~~~~l~~iK~~ 460 (473)
|..-++..++|+.
T Consensus 449 P~~~~Iv~Avk~V 461 (464)
T PRK11892 449 PSVAEVVEAVKAV 461 (464)
T ss_pred CCHHHHHHHHHHH
T ss_conf 9999999999998
No 96
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=44.78 E-value=21 Score=15.55 Aligned_cols=32 Identities=16% Similarity=0.393 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCCCE
Q ss_conf 89999999999872982999758877765401
Q gi|254780761|r 52 THEVSQILKLATETNTSITPQGGNTGLVGGQI 83 (473)
Q Consensus 52 ~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~ 83 (473)
.+.+.+.+...-+.+=.|+..|---+..||+.
T Consensus 5 ~eAi~~Am~~eM~rD~~V~v~GEDVg~~GGvf 36 (324)
T COG0022 5 IEAINEAMDEEMERDERVVVLGEDVGVYGGVF 36 (324)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCCCH
T ss_conf 99999999999812998899823523027701
No 97
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit; InterPro: IPR006275 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains . This entry represents glutamine-dependent CPSase (6.3.5.5 from EC) from prokaryotes and eukaryotes (CPSase II). ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=44.25 E-value=19 Score=15.84 Aligned_cols=48 Identities=15% Similarity=0.131 Sum_probs=33.1
Q ss_pred CCHHHHHHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECC
Q ss_conf 6989987731340136766875899549989999999999872982999758
Q gi|254780761|r 23 DDQKLISPYLTEERKIYHGTSPLVLLPSCTHEVSQILKLATETNTSITPQGG 74 (473)
Q Consensus 23 ~d~~~~~~~~~d~~~~~~~~p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGg 74 (473)
-..++|..|..-+..+-.++|. =.-.+.+.+.+++|++=|.||+.|-+
T Consensus 123 ~kaEDRe~F~~~M~ei~~pvp~----S~~~~~~eEA~~~a~~~GyPviVRpA 170 (1089)
T TIGR01369 123 KKAEDRELFREAMKEIGEPVPK----SEIVHSVEEALKAAKEIGYPVIVRPA 170 (1089)
T ss_pred HHHCCHHHHHHHHHHCCCCCCC----CCCCCCHHHHHHHHHHCCCCEEECCC
T ss_conf 2020279999999973899881----10027889999999626896898100
No 98
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=44.22 E-value=22 Score=15.49 Aligned_cols=20 Identities=15% Similarity=0.257 Sum_probs=8.8
Q ss_pred CCCCHHHHHHHCCCCCCCCC
Q ss_conf 44200222210012322234
Q gi|254780761|r 115 AGINLFNVQKIAEKNHRLFP 134 (473)
Q Consensus 115 aGv~~~~l~~~l~~~g~~~p 134 (473)
||..+.+|++.|...|-.+|
T Consensus 59 Pg~sGlelq~~L~~~~~~~P 78 (202)
T COG4566 59 PGMSGLELQDRLAERGIRLP 78 (202)
T ss_pred CCCCHHHHHHHHHHCCCCCC
T ss_conf 88850899999995399988
No 99
>PRK08957 consensus
Probab=44.09 E-value=9.7 Score=17.71 Aligned_cols=21 Identities=14% Similarity=0.499 Sum_probs=17.6
Q ss_pred HHHHHHHHHHCCCCEEE-ECCC
Q ss_conf 99999999872982999-7588
Q gi|254780761|r 55 VSQILKLATETNTSITP-QGGN 75 (473)
Q Consensus 55 v~~iv~~a~~~~i~v~p-rGgg 75 (473)
|++++++|.+++|||-| ||++
T Consensus 344 V~D~i~~Ak~~gI~vGpGRGSa 365 (1159)
T PRK08957 344 VMEFIQWSKDNGIPVGPGRGSG 365 (1159)
T ss_pred HHHHHHHHHHCCCCCCCCCCCH
T ss_conf 9999999995587637887736
No 100
>PRK09404 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=44.01 E-value=22 Score=15.47 Aligned_cols=46 Identities=17% Similarity=0.139 Sum_probs=25.6
Q ss_pred EECCHHH--HHHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCC
Q ss_conf 8669899--8773134013676687589954998999999999987298
Q gi|254780761|r 21 ILDDQKL--ISPYLTEERKIYHGTSPLVLLPSCTHEVSQILKLATETNT 67 (473)
Q Consensus 21 v~~d~~~--~~~~~~d~~~~~~~~p~~Vv~P~~~~ev~~iv~~a~~~~i 67 (473)
+.|++.+ ...|++|-... -..|..=|--.+.|.|..+.++|.+++-
T Consensus 391 FTT~p~d~RSs~Y~TDiAK~-i~aPI~HVN~DdpEav~~~~~lA~eyR~ 438 (931)
T PRK09404 391 FTTNPRDSRSTPYCTDVAKM-IQAPIFHVNGDDPEAVVFATQLALEYRQ 438 (931)
T ss_pred CCCCHHHCCCCCCCCHHHHH-HCCCEEEECCCCHHHHHHHHHHHHHHHH
T ss_conf 21473021367663116787-4684688648987999999999999999
No 101
>PRK07012 consensus
Probab=43.78 E-value=13 Score=17.00 Aligned_cols=21 Identities=19% Similarity=0.517 Sum_probs=17.9
Q ss_pred HHHHHHHHHHCCCCEEE-ECCC
Q ss_conf 99999999872982999-7588
Q gi|254780761|r 55 VSQILKLATETNTSITP-QGGN 75 (473)
Q Consensus 55 v~~iv~~a~~~~i~v~p-rGgg 75 (473)
|++++++|.+++|||=| ||++
T Consensus 346 V~D~i~~Ak~~gI~vGPGRGSa 367 (1173)
T PRK07012 346 VADFINWAKNNGVPVGPGRGSG 367 (1173)
T ss_pred HHHHHHHHHHCCCEECCCCCCH
T ss_conf 9999999997697226887703
No 102
>PRK08156 surface presentation of antigens protein SpaS; Validated
Probab=43.57 E-value=22 Score=15.43 Aligned_cols=11 Identities=27% Similarity=0.135 Sum_probs=4.4
Q ss_pred CCCCCCCCCCC
Q ss_conf 43323466653
Q gi|254780761|r 169 LGIEAVLPTGD 179 (473)
Q Consensus 169 ~~~~vv~~~G~ 179 (473)
.+.+-+.|+-+
T Consensus 104 fs~k~l~Pk~~ 114 (367)
T PRK08156 104 LATEAIKLNFS 114 (367)
T ss_pred ECCHHCCCCHH
T ss_conf 16020365364
No 103
>KOG0258 consensus
Probab=43.50 E-value=22 Score=15.42 Aligned_cols=38 Identities=16% Similarity=0.200 Sum_probs=19.2
Q ss_pred CCCCCCCCCCCCCEEEECCCCCHHHHHHHC---CCCCCCCCC
Q ss_conf 002774211237345511442002222100---123222344
Q gi|254780761|r 97 RMNRIRDIDLRSNTIAVDAGINLFNVQKIA---EKNHRLFPL 135 (473)
Q Consensus 97 ~mn~il~id~~~~~v~veaGv~~~~l~~~l---~~~g~~~p~ 135 (473)
|=+. ..-|+++-+.|-+|.--...+...+ .+.|.+.|.
T Consensus 128 rRDG-~p~~p~dI~LT~GAS~ai~~il~l~~~~~~~GvliPi 168 (475)
T KOG0258 128 RRDG-IPADPEDIFLTTGASPAIRSILSLLIAGKKTGVLIPI 168 (475)
T ss_pred HCCC-CCCCHHHEEECCCCCHHHHHHHHHHHCCCCCCEEEEC
T ss_conf 5268-9898777553278858999999999658987037526
No 104
>PRK08296 hypothetical protein; Provisional
Probab=43.40 E-value=11 Score=17.39 Aligned_cols=21 Identities=24% Similarity=0.506 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHCCCEEE
Q ss_conf 999999999999981891899
Q gi|254780761|r 410 WNTINNIVYSVVLSYGGSIAA 430 (473)
Q Consensus 410 ~~~i~~~~~~~~~~~gG~is~ 430 (473)
|..+-..+-.++.+-||.+||
T Consensus 540 W~p~F~ki~a~VTD~GG~mSH 560 (602)
T PRK08296 540 WAPIFGKIKATVTDIGGMMSH 560 (602)
T ss_pred HHHHHHHHHEEEECCCCHHHH
T ss_conf 088876430567646531236
No 105
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=42.76 E-value=23 Score=15.35 Aligned_cols=20 Identities=5% Similarity=0.102 Sum_probs=9.1
Q ss_pred CCCCCCCHHHHHHHHHHHHH
Q ss_conf 44442100131289999999
Q gi|254780761|r 347 SIKHDISVPIGQIPSFLQEV 366 (473)
Q Consensus 347 ~~~~Dvavp~~~l~~~~~~v 366 (473)
.+.|++--..+.-..|++.+
T Consensus 342 vltF~~kgg~ea~~~fi~~l 361 (426)
T COG2873 342 VLTFGVKGGYEAGKKFIDAL 361 (426)
T ss_pred EEEEEECCHHHHHHHHHHHH
T ss_conf 89987067189999999999
No 106
>pfam03471 CorC_HlyC Transporter associated domain. This small domain is found in a family of proteins with the pfam01595 domain and two CBS domains with this domain found at the C-terminus of the proteins, the domain is also found at the C terminus of some Na+/H+ antiporters. This domain is also found in CorC that is involved in Magnesium and cobalt efflux. The function of this domain is uncertain but might be involved in modulating transport of ion substrates.
Probab=42.29 E-value=17 Score=16.19 Aligned_cols=40 Identities=18% Similarity=0.232 Sum_probs=29.2
Q ss_pred CCCEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCC
Q ss_conf 37345511442002222100123222344334321113112221235
Q gi|254780761|r 107 RSNTIAVDAGINLFNVQKIAEKNHRLFPLSLPSEKYCHIGGNLATNA 153 (473)
Q Consensus 107 ~~~~v~veaGv~~~~l~~~l~~~g~~~p~~p~s~~~aTvGG~ia~~~ 153 (473)
.+.+..|.+-+.+.++++.+.- .+| +..+-|||||+-...
T Consensus 4 ~~~~~~v~G~~~l~dl~~~~~~---~l~----~~~~~TigG~i~~~l 43 (80)
T pfam03471 4 DDGSYLVDGRAPLDDLNELLGL---DLP----EEDYDTLAGLVLELL 43 (80)
T ss_pred CCCEEEEEECCCHHHHHHHHCC---CCC----CCCCEEHHHHHHHHH
T ss_conf 8988999802699999998797---999----865205999999986
No 107
>PRK07374 dnaE DNA polymerase III subunit alpha; Validated
Probab=42.25 E-value=13 Score=16.93 Aligned_cols=21 Identities=24% Similarity=0.502 Sum_probs=16.6
Q ss_pred HHHHHHHHHHCCCCEEE-ECCC
Q ss_conf 99999999872982999-7588
Q gi|254780761|r 55 VSQILKLATETNTSITP-QGGN 75 (473)
Q Consensus 55 v~~iv~~a~~~~i~v~p-rGgg 75 (473)
|.+++++|.+++|||=| ||++
T Consensus 352 V~D~i~~Ak~~gI~vGPGRGSa 373 (1171)
T PRK07374 352 VWDYIRFAREQGIPVGPGRGSA 373 (1171)
T ss_pred HHHHHHHHHHCCCCCCCCCCCH
T ss_conf 9999999997397136787714
No 108
>pfam07733 DNA_pol3_alpha Bacterial DNA polymerase III alpha subunit.
Probab=41.26 E-value=11 Score=17.30 Aligned_cols=21 Identities=24% Similarity=0.506 Sum_probs=17.8
Q ss_pred HHHHHHHHHHCCCCEEE-ECCC
Q ss_conf 99999999872982999-7588
Q gi|254780761|r 55 VSQILKLATETNTSITP-QGGN 75 (473)
Q Consensus 55 v~~iv~~a~~~~i~v~p-rGgg 75 (473)
|.++|++|++++|+|-| ||++
T Consensus 44 v~d~v~~a~~~gi~vgpgRGSa 65 (381)
T pfam07733 44 VWDLVKWAKDNGIPVGPGRGSA 65 (381)
T ss_pred HHHHHHHHHHCCCEECCCCCCH
T ss_conf 9999999998796137998737
No 109
>pfam07317 YcgR YcgR protein. This family consists of several hypothetical YcgR proteins. YcgR may be involved in the flagellar motor function and may be a new member of the flagellar regulon.
Probab=41.15 E-value=24 Score=15.20 Aligned_cols=67 Identities=18% Similarity=0.237 Sum_probs=47.5
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCHHHHHHHCCCC
Q ss_conf 99899999999998729829997588777654010488866999763002774211237345511442002222100123
Q gi|254780761|r 50 SCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDIDLRSNTIAVDAGINLFNVQKIAEKN 129 (473)
Q Consensus 50 ~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~~~~vvld~~~mn~il~id~~~~~v~veaGv~~~~l~~~l~~~ 129 (473)
++.-||..+++-..+++.+|..+-.+ |+ .++ .+||+||+++.+...-.|..-.+-...++..
T Consensus 5 ~np~eI~~~Lr~L~~~~~~l~v~~~~----g~--------~fi------T~iL~Vd~~~~~~vlD~g~~~~~N~~~l~a~ 66 (108)
T pfam07317 5 KNPLAICGVLRDLSKNKTLLTVHARH----GQ--------QFI------SKILAVDPQKNLFVFDWGSQEEENQAVLKSG 66 (108)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEECC----CC--------EEE------EEEEEECCCCCEEEEECCCCHHHHHHHHCCC
T ss_conf 29999999999998679739999579----97--------789------9999983888989997588878989875278
Q ss_pred CCCCC
Q ss_conf 22234
Q gi|254780761|r 130 HRLFP 134 (473)
Q Consensus 130 g~~~p 134 (473)
.+.|-
T Consensus 67 ~l~fv 71 (108)
T pfam07317 67 QLAFI 71 (108)
T ss_pred CEEEE
T ss_conf 35999
No 110
>pfam00920 ILVD_EDD Dehydratase family.
Probab=40.21 E-value=11 Score=17.34 Aligned_cols=39 Identities=31% Similarity=0.339 Sum_probs=29.9
Q ss_pred CCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCC
Q ss_conf 758995499899999999998729829997588777654
Q gi|254780761|r 43 SPLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGG 81 (473)
Q Consensus 43 p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~ 81 (473)
-.+|..+..-.-+-..+..|.+.++|-+.--||+-..|-
T Consensus 81 Dg~V~l~gCDK~~Pg~lMaaarlniPsi~v~gG~m~~G~ 119 (521)
T pfam00920 81 DGLVLLGGCDKTVPGMLMAAARLNIPSIFVPGGPMLPGK 119 (521)
T ss_pred CEEEEECCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCC
T ss_conf 528995638985099999998749997997068767886
No 111
>pfam05889 SLA_LP_auto_ag Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). This family consists of several eukaryotic and archaeal proteins which are related to the human soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway. Some archaeal members are annotated as being pyridoxal phosphate-dependent enzymes.
Probab=40.14 E-value=22 Score=15.51 Aligned_cols=10 Identities=30% Similarity=0.614 Sum_probs=4.3
Q ss_pred CCCCCCCCEE
Q ss_conf 4654543101
Q gi|254780761|r 202 GSEGTLGIIT 211 (473)
Q Consensus 202 GseGtlGiIT 211 (473)
|+|-.+.|+|
T Consensus 152 g~~~ilcVls 161 (389)
T pfam05889 152 GEEVILAVLS 161 (389)
T ss_pred CCCCEEEEEE
T ss_conf 8776689984
No 112
>PRK06857 consensus
Probab=39.86 E-value=26 Score=15.07 Aligned_cols=78 Identities=14% Similarity=0.075 Sum_probs=43.8
Q ss_pred CCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCH-HH
Q ss_conf 75899549989999999999872982999758877765401048886699976300277421123734551144200-22
Q gi|254780761|r 43 SPLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDIDLRSNTIAVDAGINL-FN 121 (473)
Q Consensus 43 p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~~~~vvld~~~mn~il~id~~~~~v~veaGv~~-~~ 121 (473)
-..|++..+.++..++.+.+.+.+++++=.-=.|. . .+.-|..+...-..+.|++|..+ .+
T Consensus 14 iipVir~~~~~~a~~~~~al~~gGi~~iEiTlrt~-----------~-------a~~~I~~l~~~~p~~~vGaGTV~~~e 75 (209)
T PRK06857 14 VVPVIAIDDAEDILPLAKVLAENGLPVAEITFRSA-----------A-------AAEAIRLLREAYPDMLIGAGTVLTPE 75 (209)
T ss_pred EEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCC-----------C-------HHHHHHHHHHHCCCCEEEEEECCCHH
T ss_conf 79999759999999999999987998899958993-----------2-------99999999975899489999376799
Q ss_pred HHHHCCCCCCCCCCCCC
Q ss_conf 22100123222344334
Q gi|254780761|r 122 VQKIAEKNHRLFPLSLP 138 (473)
Q Consensus 122 l~~~l~~~g~~~p~~p~ 138 (473)
--+.....|-.|-++|.
T Consensus 76 ~~~~a~~aGA~FiVSP~ 92 (209)
T PRK06857 76 QVDAAKEAGADFIVSPG 92 (209)
T ss_pred HHHHHHHCCCCEEECCC
T ss_conf 99999983999999089
No 113
>PRK09074 consensus
Probab=39.43 E-value=13 Score=16.93 Aligned_cols=21 Identities=24% Similarity=0.518 Sum_probs=17.3
Q ss_pred HHHHHHHHHHCCCCEEE-ECCC
Q ss_conf 99999999872982999-7588
Q gi|254780761|r 55 VSQILKLATETNTSITP-QGGN 75 (473)
Q Consensus 55 v~~iv~~a~~~~i~v~p-rGgg 75 (473)
|++++++|++++|||=| ||++
T Consensus 353 V~D~i~~Ak~~gI~vGpGRGSa 374 (1149)
T PRK09074 353 VADFIKWAKAHGIPVGPGRGSG 374 (1149)
T ss_pred HHHHHHHHHHCCCCCCCCCCCH
T ss_conf 9999999996388647887727
No 114
>pfam01312 Bac_export_2 FlhB HrpN YscU SpaS Family. This family includes the following members: FlhB, HrpN, YscU, SpaS, HrcU SsaU and YopU. All of these proteins export peptides using the type III secretion system. The peptides exported are quite diverse.
Probab=39.24 E-value=26 Score=15.01 Aligned_cols=15 Identities=7% Similarity=0.098 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHC
Q ss_conf 999999999999818
Q gi|254780761|r 411 NTINNIVYSVVLSYG 425 (473)
Q Consensus 411 ~~i~~~~~~~~~~~g 425 (473)
+.+...+.+.+.++|
T Consensus 290 d~~A~~Ir~~A~~~~ 304 (343)
T pfam01312 290 DEQALAIRAIAEENG 304 (343)
T ss_pred CHHHHHHHHHHHHCC
T ss_conf 699999999999879
No 115
>PRK08744 consensus
Probab=39.07 E-value=15 Score=16.59 Aligned_cols=21 Identities=19% Similarity=0.495 Sum_probs=16.8
Q ss_pred HHHHHHHHHHCCCCEEE-ECCC
Q ss_conf 99999999872982999-7588
Q gi|254780761|r 55 VSQILKLATETNTSITP-QGGN 75 (473)
Q Consensus 55 v~~iv~~a~~~~i~v~p-rGgg 75 (473)
|++++++|.+++|||=| ||++
T Consensus 354 V~D~I~~Ak~~gI~VGPGRGSa 375 (1195)
T PRK08744 354 VADFIQWGKNQGIPIGPGRGSG 375 (1195)
T ss_pred HHHHHHHHHHCCCCCCCCCCCH
T ss_conf 9999999997697327887713
No 116
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional
Probab=38.83 E-value=26 Score=14.97 Aligned_cols=15 Identities=0% Similarity=-0.035 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHC
Q ss_conf 999999999999818
Q gi|254780761|r 411 NTINNIVYSVVLSYG 425 (473)
Q Consensus 411 ~~i~~~~~~~~~~~g 425 (473)
+.+...+.+.+.+++
T Consensus 551 d~~A~~IreiA~e~~ 565 (609)
T PRK12772 551 DYVALKIKEIAKENE 565 (609)
T ss_pred CHHHHHHHHHHHHCC
T ss_conf 599999999999869
No 117
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=38.58 E-value=27 Score=14.94 Aligned_cols=76 Identities=16% Similarity=0.063 Sum_probs=42.5
Q ss_pred CEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCCCEEEEECC-CCCCCCCCCCCCCEEEECCCCCH-HH
Q ss_conf 58995499899999999998729829997588777654010488866999763-00277421123734551144200-22
Q gi|254780761|r 44 PLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIK-RMNRIRDIDLRSNTIAVDAGINL-FN 121 (473)
Q Consensus 44 ~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~~~~vvld~~-~mn~il~id~~~~~v~veaGv~~-~~ 121 (473)
.+|++-.+.++...+.+.+.+.+++++=. .+... .++-|-.+-..-.-+.+++|..+ .+
T Consensus 7 iaVlr~~~~~~a~~~~~al~~~Gi~~iEi-------------------tl~t~~a~~~i~~l~~~~~~~~iGaGTV~~~~ 67 (190)
T cd00452 7 VAVLRGDDAEDALALAEALIEGGIRAIEI-------------------TLRTPGALEAIRALRKEFPEALIGAGTVLTPE 67 (190)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCEEEE-------------------ECCCCHHHHHHHHHHHHCCCCEEEECCCCCHH
T ss_conf 99997799999999999999869988999-------------------67880299999999986898089652347799
Q ss_pred HHHHCCCCCCCCCCCCC
Q ss_conf 22100123222344334
Q gi|254780761|r 122 VQKIAEKNHRLFPLSLP 138 (473)
Q Consensus 122 l~~~l~~~g~~~p~~p~ 138 (473)
--+.+...|-.|-++|.
T Consensus 68 ~~~~a~~aGa~FivsP~ 84 (190)
T cd00452 68 QADAAIAAGAQFIVSPG 84 (190)
T ss_pred HHHHHHHCCCCEEECCC
T ss_conf 99999985998997377
No 118
>TIGR02237 recomb_radB DNA repair and recombination protein RadB; InterPro: IPR011939 This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO) and DMC1 (IPR011940 from INTERPRO), and archaeal RadA (IPR011938 from INTERPRO) ,, .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=38.04 E-value=27 Score=14.89 Aligned_cols=16 Identities=25% Similarity=0.227 Sum_probs=7.8
Q ss_pred CCCEEEEEEEECCCCCCCCC
Q ss_conf 43101279940467544321
Q gi|254780761|r 207 LGIITGAVLRLLPYRTGKQV 226 (473)
Q Consensus 207 lGiITevtlrl~p~p~~~~~ 226 (473)
-|+||+ ++=.|-.-++
T Consensus 11 ~G~iTQ----iYGp~G~GKT 26 (223)
T TIGR02237 11 RGIITQ----IYGPPGSGKT 26 (223)
T ss_pred CCEEEE----EECCCCCCHH
T ss_conf 035889----8758998678
No 119
>PRK06637 consensus
Probab=37.95 E-value=16 Score=16.28 Aligned_cols=21 Identities=24% Similarity=0.498 Sum_probs=17.8
Q ss_pred HHHHHHHHHHCCCCEEE-ECCC
Q ss_conf 99999999872982999-7588
Q gi|254780761|r 55 VSQILKLATETNTSITP-QGGN 75 (473)
Q Consensus 55 v~~iv~~a~~~~i~v~p-rGgg 75 (473)
|.+++++|.+++|||=| ||++
T Consensus 344 V~D~I~~Ak~~gI~vGPGRGSa 365 (1182)
T PRK06637 344 VSDFIKWSKKEGILVGPGRGSG 365 (1182)
T ss_pred HHHHHHHHHHCCCCCCCCCCCH
T ss_conf 9999999997697116887623
No 120
>cd06839 PLPDE_III_Btrk_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Btrk Decarboxylase. This subfamily is composed of Bacillus circulans BtrK decarboxylase and similar proteins. These proteins are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases, eukaryotic ornithine decarboxylases and diaminopimelate decarboxylases. BtrK is presumed to function as a PLP-dependent decarboxylase involved in the biosynthesis of the aminoglycoside antibiotic butirosin. Homodimer formation and the presence of the PLP cofactor may be required for catalytic activity.
Probab=37.69 E-value=28 Score=14.86 Aligned_cols=19 Identities=5% Similarity=-0.013 Sum_probs=6.7
Q ss_pred EEECCCHHHHHHHHHHHHHCCC
Q ss_conf 9954998999999999987298
Q gi|254780761|r 46 VLLPSCTHEVSQILKLATETNT 67 (473)
Q Consensus 46 Vv~P~~~~ev~~iv~~a~~~~i 67 (473)
-++..+...| ++...+.+.
T Consensus 37 AvKaN~~~~v---l~~l~~~G~ 55 (382)
T cd06839 37 SLKANPNPAL---VAHLRQLGD 55 (382)
T ss_pred EECCCCCHHH---HHHHHHCCC
T ss_conf 9704899999---999997499
No 121
>PRK06348 aspartate aminotransferase; Provisional
Probab=37.60 E-value=28 Score=14.85 Aligned_cols=26 Identities=12% Similarity=0.069 Sum_probs=11.2
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHHCCC
Q ss_conf 676687589954998999999999987298
Q gi|254780761|r 38 IYHGTSPLVLLPSCTHEVSQILKLATETNT 67 (473)
Q Consensus 38 ~~~~~p~~Vv~P~~~~ev~~iv~~a~~~~i 67 (473)
...+.|+. .+.++|.+.+.-+.+++.
T Consensus 34 l~~g~pdf----~~p~~i~~a~~~~~~~~~ 59 (383)
T PRK06348 34 LSLGDPDL----ITDESIIQAAFEDAKKGH 59 (383)
T ss_pred CCCCCCCC----CCCHHHHHHHHHHHHCCC
T ss_conf 99968899----988999999999986289
No 122
>KOG0105 consensus
Probab=37.45 E-value=19 Score=15.92 Aligned_cols=50 Identities=24% Similarity=0.234 Sum_probs=34.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 13322322233322346545431012799404675443210000135268999997
Q gi|254780761|r 187 LIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQ 242 (473)
Q Consensus 187 ~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~ 242 (473)
.|-+...-|+.+||. .+|-|+++.||..|-|+.. .|+.|+|--+|-+++.
T Consensus 14 LP~diRekeieDlFy----Kyg~i~~ieLK~r~g~ppf--afVeFEd~RDAeDAiy 63 (241)
T KOG0105 14 LPGDIREKEIEDLFY----KYGRIREIELKNRPGPPPF--AFVEFEDPRDAEDAIY 63 (241)
T ss_pred CCCCHHHCCHHHHHH----HHCCEEEEEECCCCCCCCE--EEEEECCCCCHHHHHH
T ss_conf 896000115889876----4055478870258999972--6887158652255431
No 123
>PRK08782 consensus
Probab=37.34 E-value=28 Score=14.82 Aligned_cols=76 Identities=11% Similarity=0.033 Sum_probs=44.5
Q ss_pred CEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCCCEEEEECCC-CCCCCCCCCCCCEEEECCCCCH-HH
Q ss_conf 589954998999999999987298299975887776540104888669997630-0277421123734551144200-22
Q gi|254780761|r 44 PLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKR-MNRIRDIDLRSNTIAVDAGINL-FN 121 (473)
Q Consensus 44 ~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~~~~vvld~~~-mn~il~id~~~~~v~veaGv~~-~~ 121 (473)
..|++..+.++...+.+.+.+.+++++=. .+.... ++-|..+..+-..+.+++|..+ .+
T Consensus 20 ipVir~~~~~~a~~~~eal~~gGi~~iEi-------------------Tlrt~~a~~~i~~l~~~~p~~~vGaGTV~~~e 80 (219)
T PRK08782 20 LPVVTVDTLDQARRVADALLEGGLPAIEL-------------------TLRTPVAIEALAMLKRELPNIVIGAGTVLSER 80 (219)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCEEEE-------------------ECCCCHHHHHHHHHHHHCCCCEEEEEEECCHH
T ss_conf 89997599999999999999879987999-------------------67993399999999986899479999705899
Q ss_pred HHHHCCCCCCCCCCCCC
Q ss_conf 22100123222344334
Q gi|254780761|r 122 VQKIAEKNHRLFPLSLP 138 (473)
Q Consensus 122 l~~~l~~~g~~~p~~p~ 138 (473)
--+.....|-.|-++|.
T Consensus 81 ~~~~a~~aGA~FiVSP~ 97 (219)
T PRK08782 81 QLRQSVDAGADFLVTPG 97 (219)
T ss_pred HHHHHHHCCCCEEECCC
T ss_conf 99999984998998789
No 124
>PRK09732 hypothetical protein; Provisional
Probab=37.28 E-value=18 Score=16.03 Aligned_cols=65 Identities=12% Similarity=0.127 Sum_probs=35.8
Q ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCCCEEEEECCCCCCCCCC--C--CCCCEEEECCCCCHHHHHHHCCCCC
Q ss_conf 99999999872982999758877765401048886699976300277421--1--2373455114420022221001232
Q gi|254780761|r 55 VSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDI--D--LRSNTIAVDAGINLFNVQKIAEKNH 130 (473)
Q Consensus 55 v~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~~~~vvld~~~mn~il~i--d--~~~~~v~veaGv~~~~l~~~l~~~g 130 (473)
+.+..+.|.++++|+.. ++- +.+|-++-+.||+.-... + ...-+--+.-+.+..++++.+++..
T Consensus 16 ~~aa~~~A~~~g~~v~I----------aVv--D~~G~L~a~~RmDgA~~~S~~iA~~KA~TAa~~~~~T~~~~~~~~~g~ 83 (134)
T PRK09732 16 IAAGQEEAQKNNWSVSI----------AVA--DDGGHLLALSRMDDCAPIAAYISQEKARTAALGRRETKGYEEMVNNGR 83 (134)
T ss_pred HHHHHHHHHHHCCCEEE----------EEE--CCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCC
T ss_conf 99999999983998799----------999--899999888754999424099999999998343998799999863765
Q ss_pred C
Q ss_conf 2
Q gi|254780761|r 131 R 131 (473)
Q Consensus 131 ~ 131 (473)
.
T Consensus 84 ~ 84 (134)
T PRK09732 84 T 84 (134)
T ss_pred C
T ss_conf 1
No 125
>PRK07892 consensus
Probab=36.71 E-value=16 Score=16.43 Aligned_cols=21 Identities=19% Similarity=0.476 Sum_probs=16.2
Q ss_pred HHHHHHHHHHCCCCEEE-ECCC
Q ss_conf 99999999872982999-7588
Q gi|254780761|r 55 VSQILKLATETNTSITP-QGGN 75 (473)
Q Consensus 55 v~~iv~~a~~~~i~v~p-rGgg 75 (473)
|.+++++|.+++|+|=| ||++
T Consensus 361 V~D~i~~Ak~~gI~vGPGRGSa 382 (1180)
T PRK07892 361 VADFINWAKSNGIRVGPGRGSA 382 (1180)
T ss_pred HHHHHHHHHHCCCCCCCCCCCH
T ss_conf 9999999986488627987735
No 126
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase; InterPro: IPR010121 Pyruvate phosphate dikinase (PPDK, or pyruvate orthophosphate dikinase) is found in plants, bacteria and archaea. The amino acid sequence identity between bacterial and plant enzymes is high, and they are similar in sequence to other PEP-utilizing enzymes. PPDK catalyses the reversible conversion of ATP and pyruvate to AMP and PEP (phosphoenolpyruvate). In bacteria such as Clostridium symbiosum, PPDK uses Mg2+ and NH4+ ions as cofactors . The enzyme has three domains: the N- and C-terminal domains each have an active site centre that catalyses a different step in the reaction, and the middle domain has a carrier histidine residue that moves between the two active centres. In plants, PPDK is localised predominantly in chloroplast stroma where it catalyses the rate-limiting step in the C4 photosynthetic pathway, namely the synthesis of PEP, which acts as the primary CO2 acceptor in C4 photosynthesis . PPDK activity in C4 plants is strictly regulated by light, its activity decreasing in darkness. This response is regulated by phosphorylation and dephosphorylation of the enzyme using ADP; such regulation is not seen in the bacterial form of the enzyme. PPDK is also found in C3 plants, but it is not known to have a photosynthetic role .; GO: 0050242 pyruvate phosphate dikinase activity.
Probab=36.60 E-value=26 Score=15.06 Aligned_cols=43 Identities=19% Similarity=0.313 Sum_probs=20.0
Q ss_pred EEEECCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCCCEEEECCC
Q ss_conf 999758877765401048886699976300277421123734551144
Q gi|254780761|r 69 ITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDIDLRSNTIAVDAG 116 (473)
Q Consensus 69 v~prGggt~~~G~~~p~~~~~~vvld~~~mn~il~id~~~~~v~veaG 116 (473)
|+.|||-||= -++|++.=.++.|- +=+. +.||++..+.++.+|
T Consensus 469 LT~RGGmTSH-AAVVARGMGKcCV~---G~~~-~~vn~~~k~~~~g~G 511 (920)
T TIGR01828 469 LTARGGMTSH-AAVVARGMGKCCVS---GAEE-LKVNEEKKTLTIGGG 511 (920)
T ss_pred EECCCCCCCH-HHHCCCCCCCCEEE---CCCC-EEEECCCCEEEECCC
T ss_conf 1058995445-67400578483263---2772-067210487888888
No 127
>PRK08512 consensus
Probab=36.58 E-value=17 Score=16.10 Aligned_cols=21 Identities=19% Similarity=0.483 Sum_probs=16.4
Q ss_pred HHHHHHHHHHCCCCEEE-ECCC
Q ss_conf 99999999872982999-7588
Q gi|254780761|r 55 VSQILKLATETNTSITP-QGGN 75 (473)
Q Consensus 55 v~~iv~~a~~~~i~v~p-rGgg 75 (473)
|++++++|.+++|+|=| ||++
T Consensus 369 V~D~i~~Ar~~gI~VGPGRGSA 390 (1185)
T PRK08512 369 VWDFINVAKDRGIPVGPGRGSA 390 (1185)
T ss_pred HHHHHHHHHHCCCEECCCCCCH
T ss_conf 9999999996684126887734
No 128
>PRK09108 type III secretion system protein HrcU; Validated
Probab=36.43 E-value=29 Score=14.73 Aligned_cols=23 Identities=4% Similarity=-0.086 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 68999999999999999999818
Q gi|254780761|r 403 DEFLSLHWNTINNIVYSVVLSYG 425 (473)
Q Consensus 403 ~~~~~~~~~~i~~~~~~~~~~~g 425 (473)
+.......+.+...+.+.+.++|
T Consensus 283 P~VvAKG~d~~A~~Ir~~A~~~~ 305 (354)
T PRK09108 283 PRVVAKGVDDGALALRRHAHALG 305 (354)
T ss_pred CEEHHHCCCHHHHHHHHHHHHCC
T ss_conf 98112168399999999999869
No 129
>PRK05898 dnaE DNA polymerase III DnaE; Validated
Probab=36.01 E-value=16 Score=16.38 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=18.2
Q ss_pred HHHHHHHHHHCCCCEEE-ECCC
Q ss_conf 99999999872982999-7588
Q gi|254780761|r 55 VSQILKLATETNTSITP-QGGN 75 (473)
Q Consensus 55 v~~iv~~a~~~~i~v~p-rGgg 75 (473)
|.+++++|.+++|+|=| ||++
T Consensus 277 V~D~I~~Ak~~gI~vGPGRGSa 298 (971)
T PRK05898 277 VYDFINFAKSNGIIIGPGRGSA 298 (971)
T ss_pred HHHHHHHHHHCCCCCCCCCCCH
T ss_conf 9999999997597217887626
No 130
>PRK13452 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=35.90 E-value=20 Score=15.78 Aligned_cols=37 Identities=32% Similarity=0.643 Sum_probs=23.9
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 34443323466653021122013322322233322346545431012
Q gi|254780761|r 166 HLCLGIEAVLPTGDIWNGMHKLIKDNSRYDIRDLLIGSEGTLGIITG 212 (473)
Q Consensus 166 d~v~~~~vv~~~G~i~~~~~~~~~~~~G~dl~~l~~GseGtlGiITe 212 (473)
...+.+++|+|++.++..-.... .+-|++|-+||...
T Consensus 3 ~k~~~l~IVTPe~~v~~gev~~V----------~~p~~~Ge~GIL~~ 39 (145)
T PRK13452 3 KKYLKVDVVSPLGSVFKGEADMV----------SLRGSAGEMGIAYG 39 (145)
T ss_pred CCEEEEEEECCCCCEEECEEEEE----------EEECCCCCEEECCC
T ss_conf 86669999979863770477899----------99889854778568
No 131
>TIGR01169 rplA_bact ribosomal protein L1; InterPro: IPR005878 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . Ribosomal protein L1 is the largest protein from the large ribosomal subunit. In Escherichia coli, L1 is known to bind to the 23S rRNA. This model describe s bacterial and chloroplast ribosomal protein L1. Most mitochondrial L1 sequences are sufficiently divergent to be the contained in a different entry (IPR005879 from INTERPRO).; GO: 0003723 RNA binding, 0003735 structural constituent of ribosome, 0006412 translation, 0015934 large ribosomal subunit.
Probab=35.81 E-value=26 Score=15.06 Aligned_cols=14 Identities=36% Similarity=0.565 Sum_probs=9.8
Q ss_pred CHHHHHHHHHHHCC
Q ss_conf 52689999975102
Q gi|254780761|r 233 SLEQALQLLQLSQK 246 (473)
Q Consensus 233 ~~~~a~~~~~~~~~ 246 (473)
++++|++.+.++..
T Consensus 20 ~~~eAi~LlK~~~~ 33 (227)
T TIGR01169 20 SLDEAIALLKETAT 33 (227)
T ss_pred CHHHHHHHHHHCCC
T ss_conf 98899999973265
No 132
>PRK06920 dnaE DNA polymerase III DnaE; Reviewed
Probab=35.21 E-value=19 Score=15.93 Aligned_cols=21 Identities=29% Similarity=0.426 Sum_probs=15.8
Q ss_pred HHHHHHHHHHCCCCEEE-ECCC
Q ss_conf 99999999872982999-7588
Q gi|254780761|r 55 VSQILKLATETNTSITP-QGGN 75 (473)
Q Consensus 55 v~~iv~~a~~~~i~v~p-rGgg 75 (473)
|.+++++|.+++|+|=| ||++
T Consensus 326 V~D~i~~Ak~~~I~vGPGRGSA 347 (1107)
T PRK06920 326 VWDFMKYAHENHILTGPGRGSA 347 (1107)
T ss_pred HHHHHHHHHHCCCEECCCCCCH
T ss_conf 9999999987794136888735
No 133
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=34.65 E-value=31 Score=14.55 Aligned_cols=77 Identities=13% Similarity=0.008 Sum_probs=44.4
Q ss_pred CCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCCCEEEEECCC-CCCCCCCCCCCCEEEECCCCC-HH
Q ss_conf 7589954998999999999987298299975887776540104888669997630-027742112373455114420-02
Q gi|254780761|r 43 SPLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKR-MNRIRDIDLRSNTIAVDAGIN-LF 120 (473)
Q Consensus 43 p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~~~~vvld~~~-mn~il~id~~~~~v~veaGv~-~~ 120 (473)
-.+|++-.+.++...+.+.+.+.+++++=..= ++.. +.-|..+...-..+.|++|.. ..
T Consensus 17 ii~Vlr~~~~~~a~~i~~al~~gGi~~iEiTl-------------------~tp~a~~~I~~l~~~~p~~~vGaGTV~~~ 77 (212)
T PRK05718 17 VVPVIVINKLEDAVPLAKALVAGGLPVLEVTL-------------------RTPAALEAIRAIRKEVPEALIGAGTVLNP 77 (212)
T ss_pred EEEEEECCCHHHHHHHHHHHHHCCCCEEEEEC-------------------CCCHHHHHHHHHHHHCCCCEEEEEEECCH
T ss_conf 79999748999999999999987997899957-------------------89619999999997589817965331348
Q ss_pred HHHHHCCCCCCCCCCCCC
Q ss_conf 222100123222344334
Q gi|254780761|r 121 NVQKIAEKNHRLFPLSLP 138 (473)
Q Consensus 121 ~l~~~l~~~g~~~p~~p~ 138 (473)
+--+.+...|-.|-++|.
T Consensus 78 e~~~~a~~aGA~FiVSP~ 95 (212)
T PRK05718 78 EQLAQAIEAGAQFIVSPG 95 (212)
T ss_pred HHHHHHHHCCCCEEECCC
T ss_conf 899999984998998489
No 134
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=34.31 E-value=31 Score=14.52 Aligned_cols=66 Identities=12% Similarity=0.011 Sum_probs=39.0
Q ss_pred HHHHHHHCCCCCEECCH-HHHHHHHCCCCCCCCCCCC-EEEECCCHHHHHHHHHHHHHCCCCEEEECC
Q ss_conf 99999733844186698-9987731340136766875-899549989999999999872982999758
Q gi|254780761|r 9 IQRFISIVGSEGILDDQ-KLISPYLTEERKIYHGTSP-LVLLPSCTHEVSQILKLATETNTSITPQGG 74 (473)
Q Consensus 9 ~~~l~~i~g~~~v~~d~-~~~~~~~~d~~~~~~~~p~-~Vv~P~~~~ev~~iv~~a~~~~i~v~prGg 74 (473)
+++-...+|-+-...|. .+-..............|+ .|+.|-+...+...++.|++.+|||+-...
T Consensus 22 ~~eaA~~lGw~v~v~D~~g~~~~~~~~i~~ai~~k~D~Iii~~~D~~~~~~~l~~A~~agIPvv~~~~ 89 (280)
T cd06315 22 VREAAKAIGWNLRILDGRGSEAGQAAALNQAIALKPDGIVLGGVDAAELQAELELAQKAGIPVVGWHA 89 (280)
T ss_pred HHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 99999975987999889999999999999999639999999982978878999999987997896247
No 135
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=34.29 E-value=31 Score=14.52 Aligned_cols=36 Identities=11% Similarity=0.109 Sum_probs=30.4
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 676687589954998999999999987298299975
Q gi|254780761|r 38 IYHGTSPLVLLPSCTHEVSQILKLATETNTSITPQG 73 (473)
Q Consensus 38 ~~~~~p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prG 73 (473)
+-+++-..|+.|.+...+..+++.|.+.+|||+..-
T Consensus 54 I~qgvD~Iii~p~d~~~~~~~i~~A~~agIPVI~~d 89 (303)
T cd01539 54 LAKGVDLLAVNLVDPTAAQTVINKAKQKNIPVIFFN 89 (303)
T ss_pred HHCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 975999999946873348999999996698499987
No 136
>KOG3159 consensus
Probab=34.05 E-value=32 Score=14.49 Aligned_cols=47 Identities=13% Similarity=0.134 Sum_probs=28.4
Q ss_pred CCCCEEEECCCHH-HHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCCCEEEEECCCCCC
Q ss_conf 6875899549989-99999999987298299975887776540104888669997630027
Q gi|254780761|r 41 GTSPLVLLPSCTH-EVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNR 100 (473)
Q Consensus 41 ~~p~~Vv~P~~~~-ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~~~~vvld~~~mn~ 100 (473)
-.|. ||.=+... =+..=|.+|.+.+|+++-|=+| | +.|..|++.+|=
T Consensus 47 N~p~-vVIGRhQNpw~E~nv~~~~e~~I~liRR~SG----G--------GTVyHDlGNLN~ 94 (336)
T KOG3159 47 NDPC-VVIGRHQNPWQEANVALLRENNIPLIRRFSG----G--------GTVYHDLGNLNY 94 (336)
T ss_pred CCCE-EEECCCCCCCEECCHHHHHHCCCEEEEEECC----C--------CEEEEECCCEEE
T ss_conf 8954-8982589965441488897569737998459----9--------659983475248
No 137
>PRK06326 consensus
Probab=34.02 E-value=21 Score=15.56 Aligned_cols=21 Identities=24% Similarity=0.514 Sum_probs=15.0
Q ss_pred HHHHHHHHHHCCCCEEE-ECCC
Q ss_conf 99999999872982999-7588
Q gi|254780761|r 55 VSQILKLATETNTSITP-QGGN 75 (473)
Q Consensus 55 v~~iv~~a~~~~i~v~p-rGgg 75 (473)
|.+++++|.+++|||=| ||++
T Consensus 394 V~D~V~~Ar~~gI~vGpGRGSA 415 (1240)
T PRK06326 394 VWDIINWAKDNGIPVGPGRGSG 415 (1240)
T ss_pred HHHHHHHHHHCCCEECCCCCCH
T ss_conf 9999999997794436888731
No 138
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=33.90 E-value=13 Score=16.82 Aligned_cols=31 Identities=13% Similarity=0.049 Sum_probs=24.3
Q ss_pred CCEEEECCCHHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 7589954998999999999987298299975
Q gi|254780761|r 43 SPLVLLPSCTHEVSQILKLATETNTSITPQG 73 (473)
Q Consensus 43 p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prG 73 (473)
+..-.---+-|.+.++++.|.+.+-||+..-
T Consensus 25 AV~AfNv~~~e~~~Avi~AAee~~sPvIlq~ 55 (321)
T PRK07084 25 AIPAYNFNNLEQLQAIIMACVETKSPVILQV 55 (321)
T ss_pred EEEEEEECCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 7998777999999999999999799989992
No 139
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family; InterPro: IPR006536 Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L . These proteins contain four RNA recognition motifs. ; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus.
Probab=33.66 E-value=27 Score=14.87 Aligned_cols=98 Identities=18% Similarity=0.213 Sum_probs=44.2
Q ss_pred CCCCCCCCCEECCCCCEEEEECCCCCCCCCC---CCCCCEEE---ECCCCCHHHHHHHCC-CCC------CCCCCCCCCC
Q ss_conf 8877765401048886699976300277421---12373455---114420022221001-232------2234433432
Q gi|254780761|r 74 GNTGLVGGQIPRKNRKDIILSIKRMNRIRDI---DLRSNTIA---VDAGINLFNVQKIAE-KNH------RLFPLSLPSE 140 (473)
Q Consensus 74 ggt~~~G~~~p~~~~~~vvld~~~mn~il~i---d~~~~~v~---veaGv~~~~l~~~l~-~~g------~~~p~~p~s~ 140 (473)
+..++.|+-+=. |..++=||.+|+.++ -| |.+.+--| --||=.-.++++..+ .++ -.++..|+++
T Consensus 206 AK~~LnGadIY~-GCCTLkIeyaKlt~L-NV~~Nd~dsRDyT~P~Lp~G~~~~~~~~t~~~~~~~ndlL~~~~~~~Ps~~ 283 (557)
T TIGR01649 206 AKAALNGADIYN-GCCTLKIEYAKLTRL-NVKYNDDDSRDYTNPDLPAGRRDPGLDQTAAQRQPGNDLLLALLGDHPSSY 283 (557)
T ss_pred HHHHCCCCCEEC-CCCCCEEECCCCCEE-CCEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHCCHHH
T ss_conf 987516886110-223332322447652-326657876566688757756778766157663785789999975176321
Q ss_pred CCCCCHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 11131122212356400011257333444332346665
Q gi|254780761|r 141 KYCHIGGNLATNAGGTAVLSYGNIRHLCLGIEAVLPTG 178 (473)
Q Consensus 141 ~~aTvGG~ia~~~~G~~s~~yG~~~d~v~~~~vv~~~G 178 (473)
+. ..+|.=+-+ .-.-||...++-.+.++=.|-|
T Consensus 284 g~-~~~g~~~~~----~~~~~G~~~p~~~~~r~gp~~~ 316 (557)
T TIGR01649 284 GD-AHDGYSSHG----TDLAAGPLAPLAVGDRMGPPAG 316 (557)
T ss_pred CC-CCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCC
T ss_conf 66-667765775----4544455656466777877887
No 140
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=33.56 E-value=32 Score=14.44 Aligned_cols=37 Identities=16% Similarity=0.410 Sum_probs=30.7
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECC
Q ss_conf 6766875899549989999999999872982999758
Q gi|254780761|r 38 IYHGTSPLVLLPSCTHEVSQILKLATETNTSITPQGG 74 (473)
Q Consensus 38 ~~~~~p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGg 74 (473)
+-++.-..|+.|.+.+.+..+++.|.+.+|||+....
T Consensus 57 I~qgvD~Iiv~p~d~~a~~~~l~~A~~aGIpVV~~d~ 93 (272)
T cd06300 57 IAQGVDAIIINPASPTALNPVIEEACEAGIPVVSFDG 93 (272)
T ss_pred HHCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 9859999999789767889999999985996999668
No 141
>KOG0114 consensus
Probab=33.53 E-value=32 Score=14.44 Aligned_cols=55 Identities=16% Similarity=0.193 Sum_probs=37.7
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 2013322322233322346545431012799404675443210000135268999997510
Q gi|254780761|r 185 HKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQ 245 (473)
Q Consensus 185 ~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 245 (473)
++.|.+-+--+..+|| |-+|-|..+.+-. .++.+.+.|+.++|+.+|-.+++.+.
T Consensus 24 rNLp~~ITseemydlF----Gkyg~IrQIRiG~--~k~TrGTAFVVYedi~dAk~A~dhls 78 (124)
T KOG0114 24 RNLPFKITSEEMYDLF----GKYGTIRQIRIGN--TKETRGTAFVVYEDIFDAKKACDHLS 78 (124)
T ss_pred ECCCCCCCHHHHHHHH----HCCCCEEEEEECC--CCCCCCEEEEEEHHHHHHHHHHHHHC
T ss_conf 4488654689999986----1456348999547--65767338998527666899999841
No 142
>KOG3447 consensus
Probab=33.50 E-value=24 Score=15.27 Aligned_cols=79 Identities=16% Similarity=0.215 Sum_probs=40.2
Q ss_pred CCCCCCCCCCCC-EEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCC
Q ss_conf 027742112373-4551144200222210012322234433432111311222123564000112573334443323466
Q gi|254780761|r 98 MNRIRDIDLRSN-TIAVDAGINLFNVQKIAEKNHRLFPLSLPSEKYCHIGGNLATNAGGTAVLSYGNIRHLCLGIEAVLP 176 (473)
Q Consensus 98 mn~il~id~~~~-~v~veaGv~~~~l~~~l~~~g~~~p~~p~s~~~aTvGG~ia~~~~G~~s~~yG~~~d~v~~~~vv~~ 176 (473)
|-+|+.++.++. .|+|+--..-.-|+.+.++.-.+|.||+.+. ||+|-.+-.++--.+. --++...| -+||.+
T Consensus 14 mGk~ig~~~q~~akVR~~r~eld~yL~kYf~k~~~yfAhD~~~~--c~vGDtVLir~lp~r~--t~~V~H~v--~~VVfk 87 (150)
T KOG3447 14 MGKVIGTKMQKTAKVRVTRLELDPYLLKYFNKRKTYFAHDALQQ--CTVGDTVLIRALPVRR--TKHVKHEV--AEVVFK 87 (150)
T ss_pred EEEEEECCCCCCHHEEEEHHHCCHHHHHHHCCCCCEEECCHHHC--CCCCCEEEEEECCCCH--HHHHHHHH--HHHEEE
T ss_conf 75366012231000465365428899998632321143274341--6547799885078531--22234555--653022
Q ss_pred CCCCEE
Q ss_conf 653021
Q gi|254780761|r 177 TGDIWN 182 (473)
Q Consensus 177 ~G~i~~ 182 (473)
-|.|+.
T Consensus 88 ~G~Iid 93 (150)
T KOG3447 88 VGKIID 93 (150)
T ss_pred CCCCCC
T ss_conf 464137
No 143
>TIGR00500 met_pdase_I methionine aminopeptidase, type I; InterPro: IPR002467 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of metallopeptidases belong to MEROPS peptidase family M24 (clan MG), subfamily M24A. Methionine aminopeptidase (3.4.11.18 from EC) (MAP) is responsible for the removal of the amino-terminal (initiator) methionine from nascent eukaryotic cytosolic and cytoplasmic prokaryotic proteins if the penultimate amino acid is small and uncharged. All MAP studied to date are monomeric proteins that require cobalt ions for activity. Two subfamilies of MAP enzymes are known to exist , . While being evolutionary related, they only share a limited amount of sequence similarity mostly clustered around the residues shown, in the Escherichia coli MAP , to be involved in cobalt-binding. The first family consists of enzymes from prokaryotes as well as eukaryotic MAP-1, while the second group (IPR002468 from INTERPRO) is made up of archaeal MAP and eukaryotic MAP-2. ; GO: 0004239 methionyl aminopeptidase activity, 0006508 proteolysis.
Probab=32.91 E-value=30 Score=14.66 Aligned_cols=17 Identities=24% Similarity=0.401 Sum_probs=10.9
Q ss_pred EEEECCCCCHHHHHHHC
Q ss_conf 45511442002222100
Q gi|254780761|r 110 TIAVDAGINLFNVQKIA 126 (473)
Q Consensus 110 ~v~veaGv~~~~l~~~l 126 (473)
...|+||+.+.+|+...
T Consensus 27 ~~~v~PGvST~eLD~i~ 43 (265)
T TIGR00500 27 EREVKPGVSTKELDRIA 43 (265)
T ss_pred HHHCCCCCCHHHHHHHH
T ss_conf 86368988789999999
No 144
>pfam04486 SchA_CurD SchA/CurD like domain. Members of this family have only been identified in species of the Streptomyces genus. Two family members are known to be part of gene clusters involved in the synthesis of polyketide-based spore pigments, homologous to clusters involved in the synthesis of polyketide antibiotics. The function of this protein is unknown, but it has been speculated to contain a NAD(P) binding site. Many of these proteins contain two copies of this presumed domain.
Probab=32.41 E-value=22 Score=15.46 Aligned_cols=71 Identities=13% Similarity=0.183 Sum_probs=35.0
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCC----CCCEEEECCCCCHH
Q ss_conf 89954998999999999987298299975887776540104888669997630027742112----37345511442002
Q gi|254780761|r 45 LVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDIDL----RSNTIAVDAGINLF 120 (473)
Q Consensus 45 ~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~~~~vvld~~~mn~il~id~----~~~~v~veaGv~~~ 120 (473)
.=|+|+++++|++++. +..|-.-....|-+.+.+ |.+-=..+=|.++++- ...-+-.|||+ .
T Consensus 8 y~vkpG~e~~vA~lla----~~~~~a~~d~~~~l~~tt--------vF~rdd~VVR~iev~Gdl~a~~rH~a~Qp~v--~ 73 (114)
T pfam04486 8 YPVKPGSEPELARLLA----RQDEAAAGDPAGRLLRTT--------LFQRDDVVVRLIDVEGDPDAAARHMARQPGV--R 73 (114)
T ss_pred EECCCCCHHHHHHHHC----CCCCCCCCCCCCCEEEEE--------EEEECCEEEEEEEECCCHHHHHHHHHCCCHH--H
T ss_conf 6407995889999956----698000369987457777--------7888998999998548799999988408218--8
Q ss_pred HHHHHCCCC
Q ss_conf 222100123
Q gi|254780761|r 121 NVQKIAEKN 129 (473)
Q Consensus 121 ~l~~~l~~~ 129 (473)
+++..++++
T Consensus 74 ~~E~al~py 82 (114)
T pfam04486 74 EVEPALAPY 82 (114)
T ss_pred HHHHHHHHH
T ss_conf 999975076
No 145
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=32.39 E-value=34 Score=14.32 Aligned_cols=37 Identities=19% Similarity=0.195 Sum_probs=30.9
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECC
Q ss_conf 6766875899549989999999999872982999758
Q gi|254780761|r 38 IYHGTSPLVLLPSCTHEVSQILKLATETNTSITPQGG 74 (473)
Q Consensus 38 ~~~~~p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGg 74 (473)
+-+++-..|+.|.+.+.+...++.|.+.+|||+..-.
T Consensus 57 I~qgvDaIiv~p~d~~a~~~~v~~a~~aGIpVV~~D~ 93 (274)
T cd06311 57 INRKIDALVILPFESAPLTQPVAKAKKAGIFVVVVDR 93 (274)
T ss_pred HHCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 9749999999579778889999999986997999788
No 146
>COG0587 DnaE DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]
Probab=31.86 E-value=22 Score=15.48 Aligned_cols=21 Identities=24% Similarity=0.531 Sum_probs=17.9
Q ss_pred HHHHHHHHHHCCCCEEE-ECCC
Q ss_conf 99999999872982999-7588
Q gi|254780761|r 55 VSQILKLATETNTSITP-QGGN 75 (473)
Q Consensus 55 v~~iv~~a~~~~i~v~p-rGgg 75 (473)
|.+++++|.+++|||=| ||+|
T Consensus 343 V~D~I~~Ak~~gI~vGPGRGSa 364 (1139)
T COG0587 343 VWDFIKFARDNGIPVGPGRGSA 364 (1139)
T ss_pred HHHHHHHHHHCCCCCCCCCCCH
T ss_conf 9999999997898647987625
No 147
>TIGR01132 pgm phosphoglucomutase, alpha-D-glucose phosphate-specific; InterPro: IPR005852 Phosphoglucomutase, alpha-D-glucose phosphate-specific () links the anaerobic or aerobic glycolysis of glucose-6-phosphate and glucose-1-phosphate produced by various glycan phosphorylases by catalysing the transfer of a phosphate group between C-1 and C-6 of glucose . Alpha-D-glucose 1-phosphate = alpha-D-glucose 6-phosphate.; GO: 0004614 phosphoglucomutase activity, 0005975 carbohydrate metabolic process.
Probab=31.82 E-value=22 Score=15.47 Aligned_cols=12 Identities=8% Similarity=-0.078 Sum_probs=6.7
Q ss_pred CCCCCCCCCCCC
Q ss_conf 012322234433
Q gi|254780761|r 126 AEKNHRLFPLSL 137 (473)
Q Consensus 126 l~~~g~~~p~~p 137 (473)
+++.|+.+++||
T Consensus 228 I~~Agl~lGvDP 239 (553)
T TIGR01132 228 IRKAGLRLGVDP 239 (553)
T ss_pred HHHCCCEECCCC
T ss_conf 865897772346
No 148
>KOG1123 consensus
Probab=31.57 E-value=35 Score=14.24 Aligned_cols=59 Identities=14% Similarity=0.192 Sum_probs=38.9
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHH-HCCCCEEEECCCCCCCCCCE-ECCCCCEEEEECCCC
Q ss_conf 668758995499899999999998-72982999758877765401-048886699976300
Q gi|254780761|r 40 HGTSPLVLLPSCTHEVSQILKLAT-ETNTSITPQGGNTGLVGGQI-PRKNRKDIILSIKRM 98 (473)
Q Consensus 40 ~~~p~~Vv~P~~~~ev~~iv~~a~-~~~i~v~prGggt~~~G~~~-p~~~~~~vvld~~~m 98 (473)
.-.|.++++|=.+.-+.+...--. +-+|-|.|.|+|-+++|-+. ++-...++||.+|..
T Consensus 296 dLKPst~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~tikK~clvLcts~V 356 (776)
T KOG1123 296 DLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTIKKSCLVLCTSAV 356 (776)
T ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCEEEEEEEEEECCCEEEEECCCC
T ss_conf 7685455575378789997378854476189856998742545555455142799955756
No 149
>PRK06298 type III secretion system protein; Validated
Probab=31.40 E-value=35 Score=14.22 Aligned_cols=15 Identities=20% Similarity=0.259 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHC
Q ss_conf 999999999999818
Q gi|254780761|r 411 NTINNIVYSVVLSYG 425 (473)
Q Consensus 411 ~~i~~~~~~~~~~~g 425 (473)
+.+...+.+.+.++|
T Consensus 289 d~~A~~Ir~~A~~~~ 303 (360)
T PRK06298 289 NLRAKRIIAEAEKYG 303 (360)
T ss_pred CHHHHHHHHHHHHCC
T ss_conf 599999999999879
No 150
>TIGR01107 Na_K_ATPase_bet Na+/K+ ATPase, beta subunit; InterPro: IPR000402 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (F-, V- and A-ATPases contain rotary motors) and in the type of ions they transport , . F-ATPases (F1F0-ATPases) in mitochondria, chloroplasts and bacterial plasma membranes are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases) are primarily found in eukaryotic vacuoles, catalysing ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases) are found in Archaea and function like F-ATPases. P-ATPases (E1E2-ATPases) are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles . P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H^+, Na^+, K^+, Mg^2+, Ca^2+, Ag^+ and Ag^2+, Zn^2+, Co^2+, Pb^2+, Ni^2+, Cd^2+, Cu^+ and Cu^2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the beta subunit found in the P-type cation exchange ATPases located in the plasma membranes of animal cells. These P-ATPases include both H^+/K^+-ATPases (3.6.3.10 from EC) and Na^+/K^+-ATPases (3.6.3.9 from EC), which belong to the IIC subfamily of ATPases , . These ATPases catalyse the hydrolysis of ATP coupled with the exchange of cations, pumping one cation out of the cell (H^+ or Na^+) in exchange for K^+. These ATPases contain an alpha subunit (IPR005775 from INTERPRO) that is the catalytic component, and a glycosylated beta subunit that regulates the number of sodium pumps transported to the plasma membrane through the assembly of alpha/beta heterodimers. The beta subunit has three highly conserved disulphide bonds within the extracellular domain that stabilize the alpha subunit, the alpha/beta interaction, and the catalytic activity of the alpha subunit . Different beta isoforms exist, permitting greater regulatory control. An example of a H^+/K^+-ATPase is the gastric pump responsible for acid secretion in the stomach, transporting protons from the cytoplasm of parietal cells to create a large pH gradient in exchange for the internalization of potassium ions, using ATP hydrolysis to drive the pump . More information about this protein can be found at Protein of the Month: ATP Synthases . ; GO: 0005391 sodium:potassium-exchanging ATPase activity, 0006813 potassium ion transport, 0006814 sodium ion transport, 0016020 membrane.
Probab=31.20 E-value=26 Score=14.97 Aligned_cols=11 Identities=18% Similarity=0.193 Sum_probs=3.7
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999988886
Q gi|254780761|r 298 AQNIANTILAT 308 (473)
Q Consensus 298 ~~~~~~~~~~~ 308 (473)
+.++....+.+
T Consensus 156 ~C~F~~~~L~~ 166 (317)
T TIGR01107 156 ACQFKRSWLGN 166 (317)
T ss_pred EEEECHHHHHC
T ss_conf 66304588740
No 151
>PRK07279 dnaE DNA polymerase III DnaE; Reviewed
Probab=31.07 E-value=25 Score=15.16 Aligned_cols=21 Identities=14% Similarity=0.268 Sum_probs=17.5
Q ss_pred HHHHHHHHHHCCCCEEE-ECCC
Q ss_conf 99999999872982999-7588
Q gi|254780761|r 55 VSQILKLATETNTSITP-QGGN 75 (473)
Q Consensus 55 v~~iv~~a~~~~i~v~p-rGgg 75 (473)
|.+++++|.+++|+|=| ||++
T Consensus 283 V~D~i~~Ak~~gI~vGPGRGSA 304 (1033)
T PRK07279 283 VWDLLRFGRSQGYYMGMGRGSA 304 (1033)
T ss_pred HHHHHHHHHHCCCEECCCCCCH
T ss_conf 9999999986693436888744
No 152
>COG2144 Selenophosphate synthetase-related proteins [General function prediction only]
Probab=30.79 E-value=36 Score=14.16 Aligned_cols=30 Identities=13% Similarity=0.176 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEEEEC-CCEEE
Q ss_conf 999999999988634872289999844-98699
Q gi|254780761|r 360 PSFLQEVKKSVSSIFPKTRIGLFGHIG-DGNIH 391 (473)
Q Consensus 360 ~~~~~~v~~~l~~~~~~~~~~~~gH~g-~g~lh 391 (473)
++.++++...+.+. +......|-+- +.+|+
T Consensus 268 pe~veev~~v~~~~--g~~a~~~GeVie~~~L~ 298 (324)
T COG2144 268 PEDVEEVVDVFEEE--GCPATVIGEVIEEPVLR 298 (324)
T ss_pred HHHHHHHHHHHHHC--CCCEEEEEEECCCCEEE
T ss_conf 89999999999875--99658788860376689
No 153
>PRK06826 dnaE DNA polymerase III DnaE; Reviewed
Probab=30.42 E-value=22 Score=15.45 Aligned_cols=21 Identities=29% Similarity=0.550 Sum_probs=13.4
Q ss_pred HHHHHHHHHHCCCCEEE-ECCC
Q ss_conf 99999999872982999-7588
Q gi|254780761|r 55 VSQILKLATETNTSITP-QGGN 75 (473)
Q Consensus 55 v~~iv~~a~~~~i~v~p-rGgg 75 (473)
|.+++++|++++|+|=| ||++
T Consensus 342 V~D~i~~Ar~~gI~vGpGRGSa 363 (1157)
T PRK06826 342 VWDFIKFAKENGIPVGPGRGSA 363 (1157)
T ss_pred HHHHHHHHHHCCCEECCCCCCH
T ss_conf 9999999986683236887728
No 154
>pfam07476 MAAL_C Methylaspartate ammonia-lyase C-terminus. Methylaspartate ammonia-lyase EC:4.3.1.2 catalyses the second step of fermentation of glutamate. It is a homodimer. This family represents the C-terminal region of Methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the pfam01188. This family represents the catalytic domain and contains a metal binding site.
Probab=30.41 E-value=36 Score=14.12 Aligned_cols=22 Identities=18% Similarity=0.373 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 8999999998888631345653
Q gi|254780761|r 295 LERAQNIANTILATGFNKKILT 316 (473)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~ 316 (473)
.+....+.+.+...+.+-.++.
T Consensus 123 ie~l~~Lr~~L~~~G~~v~iVA 144 (249)
T pfam07476 123 IERLAALREKLDRRGIGVEIVA 144 (249)
T ss_pred HHHHHHHHHHHHHCCCCCEEEE
T ss_conf 9999999999996489847984
No 155
>COG1693 Repressor of nif and glnA expression [Transcription]
Probab=30.11 E-value=32 Score=14.45 Aligned_cols=30 Identities=27% Similarity=0.259 Sum_probs=22.4
Q ss_pred CCEEEECCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 758995499899999999998729829997
Q gi|254780761|r 43 SPLVLLPSCTHEVSQILKLATETNTSITPQ 72 (473)
Q Consensus 43 p~~Vv~P~~~~ev~~iv~~a~~~~i~v~pr 72 (473)
-.+++.+++-+++..+++.|...++.+.||
T Consensus 111 N~s~i~k~dfedvl~iv~~~~~~Glsispr 140 (325)
T COG1693 111 NISVIDKSDFEDVLDIVKEVISSGLSISPR 140 (325)
T ss_pred EEEEECHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 778864989999999999998667776772
No 156
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=30.09 E-value=37 Score=14.08 Aligned_cols=59 Identities=14% Similarity=-0.006 Sum_probs=36.3
Q ss_pred HHCCCCCEECCHHHHHHHHCC-CCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 733844186698998773134-01367668758995499899999999998729829997
Q gi|254780761|r 14 SIVGSEGILDDQKLISPYLTE-ERKIYHGTSPLVLLPSCTHEVSQILKLATETNTSITPQ 72 (473)
Q Consensus 14 ~i~g~~~v~~d~~~~~~~~~d-~~~~~~~~p~~Vv~P~~~~ev~~iv~~a~~~~i~v~pr 72 (473)
.-+|-+-+..|..+...-..+ ...+-++.-..|+.|.+.+-+..+++.|.+.+|||+..
T Consensus 26 ~e~G~~l~~~~~~d~~~q~~~ie~~i~qgvd~iii~p~d~~~~~~~v~~A~~agIpVv~~ 85 (289)
T cd01540 26 KEKGFTVVKIDVPDGEKVLSAIDNLGAQGAKGFVICVPDVKLGPAIVAKAKAYNMKVVAV 85 (289)
T ss_pred HHHCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHCCCEEEEE
T ss_conf 984987999768996999999999998589889992787100189999999879869993
No 157
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=29.90 E-value=37 Score=14.06 Aligned_cols=16 Identities=25% Similarity=0.196 Sum_probs=5.7
Q ss_pred CCCCC--HHHHHHHHHHC
Q ss_conf 96789--89999999733
Q gi|254780761|r 1 MNQLS--LDLIQRFISIV 16 (473)
Q Consensus 1 ~~~~~--~~~~~~l~~i~ 16 (473)
|++++ +.+-+.|...+
T Consensus 1 m~~~~~~~ai~~al~~~~ 18 (327)
T PRK09212 1 MAQLTVREALRDAMREEM 18 (327)
T ss_pred CCCCHHHHHHHHHHHHHH
T ss_conf 982229999999999999
No 158
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=29.88 E-value=37 Score=14.06 Aligned_cols=12 Identities=33% Similarity=0.631 Sum_probs=7.1
Q ss_pred CCCCCCCCCEEE
Q ss_conf 346545431012
Q gi|254780761|r 201 IGSEGTLGIITG 212 (473)
Q Consensus 201 ~GseGtlGiITe 212 (473)
+|++-.+.|.|-
T Consensus 201 ~g~~~i~cVlST 212 (444)
T TIGR03531 201 IGPENILCVLST 212 (444)
T ss_pred HCCCCEEEEEEC
T ss_conf 286764799853
No 159
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=29.82 E-value=37 Score=14.05 Aligned_cols=15 Identities=0% Similarity=0.011 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHC
Q ss_conf 999999999999818
Q gi|254780761|r 411 NTINNIVYSVVLSYG 425 (473)
Q Consensus 411 ~~i~~~~~~~~~~~g 425 (473)
+.+...+.+.+.++|
T Consensus 295 d~~A~~Ir~~A~~~~ 309 (352)
T PRK05702 295 DEVALRIREIAREHN 309 (352)
T ss_pred CHHHHHHHHHHHHCC
T ss_conf 699999999999869
No 160
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=29.77 E-value=37 Score=14.05 Aligned_cols=22 Identities=18% Similarity=0.329 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHCCCCEEEECC
Q ss_conf 9999999999872982999758
Q gi|254780761|r 53 HEVSQILKLATETNTSITPQGG 74 (473)
Q Consensus 53 ~ev~~iv~~a~~~~i~v~prGg 74 (473)
.+...++++|.++++-++.-|-
T Consensus 50 ~~~~~lv~fA~~~~idl~vVGP 71 (428)
T COG0151 50 TDHEALVAFAKEKNVDLVVVGP 71 (428)
T ss_pred CCHHHHHHHHHHCCCCEEEECC
T ss_conf 5889999999973999899897
No 161
>TIGR01264 tyr_amTase_E tyrosine aminotransferase; InterPro: IPR005957 This entry describes tyrosine aminotransferase (2.6.1.5 from EC) as found in animals and Trypanosoma cruzi (Euglenozoa). It is the first enzyme of a pathway of tyrosine degradation via homogentisate. L-tyrosine + 2-oxoglutarate = 4-hydroxyphenylpyruvate + L-glutamate.; GO: 0004838 tyrosine transaminase activity, 0030170 pyridoxal phosphate binding, 0009072 aromatic amino acid family metabolic process.
Probab=29.70 E-value=37 Score=14.04 Aligned_cols=15 Identities=27% Similarity=0.406 Sum_probs=5.6
Q ss_pred HHHHHHHCCCCEEEE
Q ss_conf 999998729829997
Q gi|254780761|r 58 ILKLATETNTSITPQ 72 (473)
Q Consensus 58 iv~~a~~~~i~v~pr 72 (473)
|..+|+.-+--+|||
T Consensus 120 i~a~Ad~G~nvLVP~ 134 (415)
T TIGR01264 120 IEALADAGQNVLVPR 134 (415)
T ss_pred HHHHCCCCCEEECCC
T ss_conf 999537978063078
No 162
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=29.65 E-value=37 Score=14.04 Aligned_cols=14 Identities=7% Similarity=-0.002 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999981
Q gi|254780761|r 411 NTINNIVYSVVLSY 424 (473)
Q Consensus 411 ~~i~~~~~~~~~~~ 424 (473)
+.+...+.+.+.++
T Consensus 297 d~~A~~Ir~~A~~~ 310 (358)
T PRK13109 297 DLIALKIREIAERN 310 (358)
T ss_pred CHHHHHHHHHHHHC
T ss_conf 69999999999987
No 163
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=29.47 E-value=38 Score=14.02 Aligned_cols=64 Identities=16% Similarity=0.121 Sum_probs=38.5
Q ss_pred HHHHHHHCCCCCEECCH----HHHHHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECC
Q ss_conf 99999733844186698----9987731340136766875899549989999999999872982999758
Q gi|254780761|r 9 IQRFISIVGSEGILDDQ----KLISPYLTEERKIYHGTSPLVLLPSCTHEVSQILKLATETNTSITPQGG 74 (473)
Q Consensus 9 ~~~l~~i~g~~~v~~d~----~~~~~~~~d~~~~~~~~p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGg 74 (473)
+++-....|-+-+..|. ..-.....+. +-++.-..|+.|.+.+.+...++.|.+.+|||+....
T Consensus 22 ~e~~A~~~G~~~~v~~~~~d~~~q~~~i~~~--i~~~vd~Iii~p~d~~~~~~~i~~a~~agIpVv~~d~ 89 (275)
T cd06317 22 FQAAAEEDGVEVIVLDANGDVARQAAQVEDL--IAQKVDGIILWPTDGQAYIPGLRKAKQAGIPVVITNS 89 (275)
T ss_pred HHHHHHHCCCEEEEECCCCCHHHHHHHHHHH--HHCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECC
T ss_conf 9999997699899977999999999999999--9759999999678712457999999986994999768
No 164
>PRK05672 dnaE2 error-prone DNA polymerase; Validated
Probab=28.91 E-value=27 Score=14.88 Aligned_cols=13 Identities=23% Similarity=0.432 Sum_probs=7.2
Q ss_pred HHHHHHHHHHCCC
Q ss_conf 9999999987298
Q gi|254780761|r 55 VSQILKLATETNT 67 (473)
Q Consensus 55 v~~iv~~a~~~~i 67 (473)
|.+++++|.+++|
T Consensus 335 V~D~i~~Ak~~gI 347 (1050)
T PRK05672 335 VHDIVRFARSQGI 347 (1050)
T ss_pred HHHHHHHHHHCCC
T ss_conf 9999999985574
No 165
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=28.79 E-value=39 Score=13.94 Aligned_cols=19 Identities=21% Similarity=0.520 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHCCCCE
Q ss_conf 9999999999886348722
Q gi|254780761|r 360 PSFLQEVKKSVSSIFPKTR 378 (473)
Q Consensus 360 ~~~~~~v~~~l~~~~~~~~ 378 (473)
.++.+.++..|++.+++..
T Consensus 175 DPLa~~vR~~LRk~~~~~~ 193 (263)
T COG1179 175 DPLAAKVRRKLRKRFPKIK 193 (263)
T ss_pred CCHHHHHHHHHHHHCCCCC
T ss_conf 8089999999987435765
No 166
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=28.74 E-value=39 Score=13.94 Aligned_cols=35 Identities=11% Similarity=0.197 Sum_probs=29.5
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECC
Q ss_conf 66875899549989999999999872982999758
Q gi|254780761|r 40 HGTSPLVLLPSCTHEVSQILKLATETNTSITPQGG 74 (473)
Q Consensus 40 ~~~p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGg 74 (473)
++.-..|+.|.+.+.+..+++.|.+.+|||+....
T Consensus 54 ~~vd~iii~~~d~~~~~~~~~~a~~aGIPVv~~d~ 88 (282)
T cd06318 54 RGVNVLIINPVDPEGLVPAVAAAKAAGVPVVVVDS 88 (282)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 69987998116805669999999977998899737
No 167
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD; InterPro: IPR014104 Members of this family are encoded by slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. (strain PCC 6803), and close homologues (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyses the first step that is committed to myxoxanthophyll..
Probab=28.74 E-value=28 Score=14.79 Aligned_cols=41 Identities=22% Similarity=0.339 Sum_probs=30.8
Q ss_pred CCEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHC
Q ss_conf 73455114420022221001232223443343211131122212
Q gi|254780761|r 108 SNTIAVDAGINLFNVQKIAEKNHRLFPLSLPSEKYCHIGGNLAT 151 (473)
Q Consensus 108 ~~~v~veaGv~~~~l~~~l~~~g~~~p~~p~s~~~aTvGG~ia~ 151 (473)
..+|+|++||=+-.--+.|++.|+...+ -.-.+.+||+.+|
T Consensus 2 ~~VvVIGaGIaGLTaAALLA~~G~~Vtl---~E~h~q~GGCAgT 42 (499)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTL---LEQHAQLGGCAGT 42 (499)
T ss_pred CEEEEEECCHHHHHHHHHHHHCCCCEEE---EEEECCCCCCCCC
T ss_conf 7069981872678999999853996799---9740127875443
No 168
>PRK05673 dnaE DNA polymerase III subunit alpha; Validated
Probab=28.50 E-value=26 Score=14.99 Aligned_cols=21 Identities=24% Similarity=0.574 Sum_probs=15.4
Q ss_pred HHHHHHHHHHCCCCEEE-ECCC
Q ss_conf 99999999872982999-7588
Q gi|254780761|r 55 VSQILKLATETNTSITP-QGGN 75 (473)
Q Consensus 55 v~~iv~~a~~~~i~v~p-rGgg 75 (473)
|.+++++|.+++|+|=| ||++
T Consensus 343 V~D~v~~Ar~~gI~vGpGRGSa 364 (1143)
T PRK05673 343 VADFIKWAKDNGIPVGPGRGSG 364 (1143)
T ss_pred HHHHHHHHHHCCCCCCCCCCCH
T ss_conf 9999999995388757887753
No 169
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=28.47 E-value=39 Score=13.91 Aligned_cols=21 Identities=19% Similarity=0.211 Sum_probs=11.4
Q ss_pred CCCCCCCCCCCCCCCCEEEEE
Q ss_conf 223332234654543101279
Q gi|254780761|r 194 YDIRDLLIGSEGTLGIITGAV 214 (473)
Q Consensus 194 ~dl~~l~~GseGtlGiITevt 214 (473)
.||.+.+-++.|..++|.|+.
T Consensus 33 r~f~~AL~~~~~~~~vIAEvK 53 (254)
T COG0134 33 RDFYAALKEASGKPAVIAEVK 53 (254)
T ss_pred CCHHHHHHHCCCCCEEEEEEE
T ss_conf 359999974378860899861
No 170
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit; InterPro: IPR010205 This entry represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria.; GO: 0016655 oxidoreductase activity acting on NADH or NADPH quinone or similar compound as acceptor, 0051537 2 iron 2 sulfur cluster binding, 0006814 sodium ion transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=28.20 E-value=38 Score=14.01 Aligned_cols=56 Identities=23% Similarity=0.274 Sum_probs=32.5
Q ss_pred CCCC-CCCEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 2112-373455114420022221001232223443343211131122212356400011257333444332346665302
Q gi|254780761|r 103 DIDL-RSNTIAVDAGINLFNVQKIAEKNHRLFPLSLPSEKYCHIGGNLATNAGGTAVLSYGNIRHLCLGIEAVLPTGDIW 181 (473)
Q Consensus 103 ~id~-~~~~v~veaGv~~~~l~~~l~~~g~~~p~~p~s~~~aTvGG~ia~~~~G~~s~~yG~~~d~v~~~~vv~~~G~i~ 181 (473)
.||. ++...+|++| +.|...|..+|-++| | | =||-- ++||+ -++||-..||++
T Consensus 35 ~iNd~~E~~~~v~~G---~~LL~~L~~~gif~s----S---a-CGGgg---~C~QC------------rv~V~~ggge~L 88 (425)
T TIGR01941 35 KINDDEEKSITVPAG---GKLLNTLASNGIFIS----S---A-CGGGG---TCGQC------------RVRVVEGGGEIL 88 (425)
T ss_pred EECCCCCCEEECCCC---HHHHHHHHHCCEEEC----C---C-CCCCC---CCCCC------------EEEEECCCCCCC
T ss_conf 861874435771221---479999875782312----7---8-88788---46631------------589963788768
Q ss_pred EEE
Q ss_conf 112
Q gi|254780761|r 182 NGM 184 (473)
Q Consensus 182 ~~~ 184 (473)
.|-
T Consensus 89 pTe 91 (425)
T TIGR01941 89 PTE 91 (425)
T ss_pred CCC
T ss_conf 775
No 171
>pfam07247 AATase Alcohol acetyltransferase. This family contains a number of alcohol acetyltransferase (EC:2.3.1.84) enzymes approximately 500 residues long that seem to be restricted to Saccharomyces. These catalyse the esterification of isoamyl alcohol by acetyl coenzyme A.
Probab=27.90 E-value=35 Score=14.24 Aligned_cols=29 Identities=3% Similarity=-0.082 Sum_probs=14.2
Q ss_pred ECCCHHHHHHHHHHHH-HCC-CCEEEECCCC
Q ss_conf 5499899999999998-729-8299975887
Q gi|254780761|r 48 LPSCTHEVSQILKLAT-ETN-TSITPQGGNT 76 (473)
Q Consensus 48 ~P~~~~ev~~iv~~a~-~~~-i~v~prGggt 76 (473)
.|-+.+++...++... +|- +...+.+-++
T Consensus 29 ~~~~~~~l~~ALr~~I~~~p~L~~~v~~~~~ 59 (479)
T pfam07247 29 QSLDKTQLANALRSLILKNPILATNIYYTSD 59 (479)
T ss_pred CCCCHHHHHHHHHHHHHHCCEEEEEEECCCC
T ss_conf 8799899999999999759767898621686
No 172
>PRK13607 proline dipeptidase; Provisional
Probab=27.76 E-value=32 Score=14.44 Aligned_cols=13 Identities=0% Similarity=0.061 Sum_probs=7.3
Q ss_pred HHHHCCCCEEEEC
Q ss_conf 9987298299975
Q gi|254780761|r 61 LATETNTSITPQG 73 (473)
Q Consensus 61 ~a~~~~i~v~prG 73 (473)
..++...|.-+.+
T Consensus 42 ~~~D~~YpFRq~S 54 (442)
T PRK13607 42 FLDDHDYPFKVNP 54 (442)
T ss_pred CCCCCCCCCCCCC
T ss_conf 3799899977799
No 173
>TIGR01048 lysA diaminopimelate decarboxylase; InterPro: IPR002986 Pyridoxal-dependent decarboxylases that act on ornithine-, lysine-, arginine- and related substrates can be classified into different families on the basis of sequence similarity , . One of these families includes ornithine decarboxylase (ODC), which catalyses the transformation of ornithine into putrescine; prokaryotic diaminopimelic acid decarboxylase (DAPDC), which catalyses the conversion of diaminopimelic acid into lysine, the final step of lysine biosynthesis; Pseudomonas syringae pv. tabaci protein, tabA, which is probably involved in tabtoxin biosynthesis and is similar to DAPDC; and bacterial and plant biosynthetic arginine decarboxylase (ADC), which catalyses the transformation of arginine into agmatine, the first step in putrescine synthesis from arginine. Although these proteins, which are known collectively as group IV decarboxylases , probably share a common evolutionary origin, their levels of sequence similarity are low, being confined to a few short conserved regions. These conserved motifs suggest a common structural arrangement for positioning of substrate and the cofactor pyridoxal 5'-phosphate among bacterial DAP decarboxylases, eukaryotic ornithine decarboxylases and arginine decarboxylases . The structure of bacterial diaminopimelate decarboxylase has been determined . ; GO: 0008836 diaminopimelate decarboxylase activity, 0009089 lysine biosynthetic process via diaminopimelate.
Probab=27.61 E-value=24 Score=15.22 Aligned_cols=159 Identities=15% Similarity=0.154 Sum_probs=76.9
Q ss_pred HHHHHHHHHHCCCCCEECCHHHHHHHHCCCCCCCCC--CCC-EEEECCCHHHHHHHHHHHHHCCCCEEEECCC---CCCC
Q ss_conf 899999997338441866989987731340136766--875-8995499899999999998729829997588---7776
Q gi|254780761|r 6 LDLIQRFISIVGSEGILDDQKLISPYLTEERKIYHG--TSP-LVLLPSCTHEVSQILKLATETNTSITPQGGN---TGLV 79 (473)
Q Consensus 6 ~~~~~~l~~i~g~~~v~~d~~~~~~~~~d~~~~~~~--~p~-~Vv~P~~~~ev~~iv~~a~~~~i~v~prGgg---t~~~ 79 (473)
+--+++|.+..|-.=...|...+..........|.. .+. .|.+.--.---..|+++..+.+..+=..++| +.+.
T Consensus 13 ~~~~~~La~~fGTPLYVyd~~~l~~~~~~~~~AF~~~~~~~~~v~YA~KAn~Nl~~~~~la~~G~G~D~VS~GEL~~A~~ 92 (431)
T TIGR01048 13 GVDLKELAEEFGTPLYVYDEATLRERFEAYKEAFGAAERESALVCYAVKANSNLALLRLLAELGSGFDVVSGGELYRALA 92 (431)
T ss_pred CCCHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHCCHHHHHHHHHCCCCEEEEEHHHHHHHHH
T ss_conf 46779999851898798167899999999998730158775315874314076889999996388468870169999998
Q ss_pred CCCEECCCCCEEEEECC-----CCCCCCCCCCCCCEEEECCCCCHHHHHHHCCCCCC----CCCC----CCCCCCCCCCH
Q ss_conf 54010488866999763-----00277421123734551144200222210012322----2344----33432111311
Q gi|254780761|r 80 GGQIPRKNRKDIILSIK-----RMNRIRDIDLRSNTIAVDAGINLFNVQKIAEKNHR----LFPL----SLPSEKYCHIG 146 (473)
Q Consensus 80 G~~~p~~~~~~vvld~~-----~mn~il~id~~~~~v~veaGv~~~~l~~~l~~~g~----~~p~----~p~s~~~aTvG 146 (473)
-|.-|.....-|+.+=. -|.+- ++..=+++-|+-=--+..|++...+.|. .+.+ |+.|.++.
T Consensus 93 AG~~~~~~~~~i~F~Gn~Ks~~El~~A--l~~~i~~~nVdS~~El~~l~~~A~e~G~~~~i~~RvNP~VdakTHpyI--- 167 (431)
T TIGR01048 93 AGFPLQEIPEKIVFSGNGKSRAELERA--LELGIRCINVDSFSELELLNEIAPELGKKARISLRVNPDVDAKTHPYI--- 167 (431)
T ss_pred HCCCCCCCCCCEEEECCCCCHHHHHHH--HHCCCCEEEECCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCHH---
T ss_conf 088855666436896587788999999--963798999768899999997352138558999972688759878312---
Q ss_pred HHHHCCCCCCHHHHCCCCCC---CCCCCCCCC
Q ss_conf 22212356400011257333---444332346
Q gi|254780761|r 147 GNLATNAGGTAVLSYGNIRH---LCLGIEAVL 175 (473)
Q Consensus 147 G~ia~~~~G~~s~~yG~~~d---~v~~~~vv~ 175 (473)
+ .|..-.|+|-..+ ..-..+++.
T Consensus 168 ---~---TG~~~sKFG~~~~sG~a~~~~~~a~ 193 (431)
T TIGR01048 168 ---S---TGLKDSKFGIDVESGEALEAYLYAL 193 (431)
T ss_pred ---H---HHCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf ---2---1000365477745753178999998
No 174
>TIGR02428 pcaJ_scoB_fam 3-oxoacid CoA-transferase, B subunit; InterPro: IPR012791 CoA-transferases catalyse the reversible transfer of of coenzyme A from CoA-thioesters to free acids, and can be divided into three families . Family I includes transferases for 3-oxoacids (2.8.3.5 from EC, 2.8.3.6 from EC), short-chain fatty acids (2.8.3.8 from EC, 2.8.3.9 from EC) and glutaconate (2.8.3.12 from EC). Most of the family I enzymes use acetyl-CoA or succinyl-CoA as CoA donors, and are composed of two separate polypeptides, subunits A and B, which generally aggregate as heterodimers or heterotetramers. The eukaryotic enzymes, however, are generally composed of a single two-domain polypetide representing a fusion of the A and B subunits. The transfer of CoA from one substrate to another occurs via a ping pong mechanism which involves the formation of thioester bond between CoA and a conserved glutamate residue at the active site of the enzyme . This entry represents the B subunit of family I CoA-transferases, which contains the conserved active-site glutamate residue. This domain forms a three-layer alpha-beta-alpha sandwich where the central layer is a mixed beta-sheet, against which helices pack from both sides , . The active site is thought to be located at the interface of the A and B subunits and formed by loops from both subunits.; GO: 0008410 CoA-transferase activity.
Probab=27.37 E-value=31 Score=14.50 Aligned_cols=44 Identities=23% Similarity=0.228 Sum_probs=29.2
Q ss_pred CCCCCCEEEEEECCCCCCCC--CCCCCCCCCCCCCCCEEEEEEEECCCCCCCC
Q ss_conf 66653021122013322322--2333223465454310127994046754432
Q gi|254780761|r 175 LPTGDIWNGMHKLIKDNSRY--DIRDLLIGSEGTLGIITGAVLRLLPYRTGKQ 225 (473)
Q Consensus 175 ~~~G~i~~~~~~~~~~~~G~--dl~~l~~GseGtlGiITevtlrl~p~p~~~~ 225 (473)
+.||+++++|=-.|--.++| +=.++|+.|| .||+= +=|.|+.-.
T Consensus 14 L~dG~yVNLGIG~PtlVany~Peg~~v~LqSE--NGilG-----~GP~P~~G~ 59 (208)
T TIGR02428 14 LKDGDYVNLGIGIPTLVANYLPEGIEVILQSE--NGILG-----MGPAPEEGE 59 (208)
T ss_pred CCCCCEEECCCCCHHCCCCCCCCCCEEEEEEC--CCCCC-----CCCCCCCCC
T ss_conf 78988996787730016665488874887602--45116-----887567887
No 175
>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]
Probab=26.82 E-value=42 Score=13.72 Aligned_cols=21 Identities=24% Similarity=0.379 Sum_probs=7.7
Q ss_pred HHHHHHCCCCEEEEEEEECCCEE
Q ss_conf 99886348722899998449869
Q gi|254780761|r 368 KSVSSIFPKTRIGLFGHIGDGNI 390 (473)
Q Consensus 368 ~~l~~~~~~~~~~~~gH~g~g~l 390 (473)
++++++-+..++ +=|-..|.+
T Consensus 319 ~~l~~~lp~~~~--~iHkpEGAI 339 (417)
T COG3977 319 AILRRYLPEYRC--LIHKPEGAI 339 (417)
T ss_pred HHHHHHCCCCCE--EEECCCCCE
T ss_conf 999986577652--542687515
No 176
>PRK06375 consensus
Probab=26.72 E-value=42 Score=13.71 Aligned_cols=33 Identities=15% Similarity=0.169 Sum_probs=14.5
Q ss_pred CCEEEECCCCHHHHHHHHHHCCHH-HHHHHHHHHHHH
Q ss_conf 918997355565688888731789-999999998871
Q gi|254780761|r 426 GSIAAEHGIGQLHKKRLEGILEPT-EIKIMKKIKEIF 461 (473)
Q Consensus 426 G~is~eHGiG~~k~~~~~~~~~~~-~~~~l~~iK~~~ 461 (473)
|+.-++.|-|..|..|- .+++ -.+.+++|++.+
T Consensus 345 G~~Fg~~g~~~~Ri~~a---~~~e~l~ea~~RL~~~~ 378 (381)
T PRK06375 345 GSAFGRQGEHHFRISFA---TSEDIIKEGIERIGKFF 378 (381)
T ss_pred CHHHCCCCCCEEEEEEE---CCHHHHHHHHHHHHHHH
T ss_conf 73548899997999981---99999999999999999
No 177
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=26.69 E-value=42 Score=13.71 Aligned_cols=34 Identities=21% Similarity=0.417 Sum_probs=27.2
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 6687589954998999999999987298299975
Q gi|254780761|r 40 HGTSPLVLLPSCTHEVSQILKLATETNTSITPQG 73 (473)
Q Consensus 40 ~~~p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prG 73 (473)
++.-..|+.|.+.+.+..+++.|.+.+|||+...
T Consensus 54 ~~vDgIii~p~~~~~~~~~~~~a~~~gIPvv~~d 87 (277)
T cd06319 54 KGVSGIIISPTNSSAAVTLLKLAAQAKIPVVIAD 87 (277)
T ss_pred CCCCEEEECCCCCCCHHHHHHHHHHCCCCEEEEE
T ss_conf 6998799647774110999999997699789986
No 178
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=26.53 E-value=42 Score=13.69 Aligned_cols=40 Identities=23% Similarity=0.252 Sum_probs=21.7
Q ss_pred HHHHHHCCCEEEECCCCHHHHHHHHHHCCHH-HHHHHHHHHHHHC
Q ss_conf 9999818918997355565688888731789-9999999988715
Q gi|254780761|r 419 SVVLSYGGSIAAEHGIGQLHKKRLEGILEPT-EIKIMKKIKEIFD 462 (473)
Q Consensus 419 ~~~~~~gG~is~eHGiG~~k~~~~~~~~~~~-~~~~l~~iK~~~D 462 (473)
+++++. |+.-|+-|-|..|.++- .+.. ..+.++++|++++
T Consensus 345 kVal~~-G~~FG~~g~gf~RlN~a---cpr~~L~eal~ri~~al~ 385 (388)
T COG1168 345 KVALSP-GSTFGEEGSGFVRLNFA---CPRAILEEALERLKRALK 385 (388)
T ss_pred CEECCC-CCCCCCCCCCEEEEECC---CCHHHHHHHHHHHHHHHH
T ss_conf 571357-87567678745888637---988999999999999985
No 179
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=26.51 E-value=42 Score=13.69 Aligned_cols=78 Identities=6% Similarity=0.084 Sum_probs=43.5
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHHCC-CCEEEECCC-CCCCCCCEECCCCCEEEEECCCCCCCCCCCCC-CCEEEECCCC
Q ss_conf 68758995499899999999998729-829997588-77765401048886699976300277421123-7345511442
Q gi|254780761|r 41 GTSPLVLLPSCTHEVSQILKLATETN-TSITPQGGN-TGLVGGQIPRKNRKDIILSIKRMNRIRDIDLR-SNTIAVDAGI 117 (473)
Q Consensus 41 ~~p~~Vv~P~~~~ev~~iv~~a~~~~-i~v~prGgg-t~~~G~~~p~~~~~~vvld~~~mn~il~id~~-~~~v~veaGv 117 (473)
+.-.+-+.|++.+-+++++..+.+.+ .-|+||=+= |++. ++ -. .+++++ +|.++ +..-.+.+|+
T Consensus 76 g~D~~rlvnGar~g~qAv~~a~c~~GD~VIl~rnaHyS~~~-A~-el--aG~~~~---------~v~~~~~~~~~I~~~~ 142 (386)
T PRK09331 76 GMDEARVTPGAREGKFAVMHALCKKGDYVVLDGLAHYTSYV-AA-ER--AGLNVR---------EVPKTGYPDYRITPEA 142 (386)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCHHHHHH-HH-HH--CCCEEE---------EECCCCCCCCCCCHHH
T ss_conf 99637852884278999999863699979844840599999-99-97--598589---------9368777234508005
Q ss_pred CHHHHHHHCCCCCC
Q ss_conf 00222210012322
Q gi|254780761|r 118 NLFNVQKIAEKNHR 131 (473)
Q Consensus 118 ~~~~l~~~l~~~g~ 131 (473)
.-..+++..+++|.
T Consensus 143 ~~~~Iee~~~e~gk 156 (386)
T PRK09331 143 YAEKIEEVEDETGK 156 (386)
T ss_pred HHHHHHHHHHHCCC
T ss_conf 79999999986189
No 180
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase; InterPro: IPR006268 These sequences are one of at least three types of phospho-2-dehydro-3-deoxyheptonate aldolase (DAHP synthase). This enzyme catalyzes the first of 7 steps in the biosynthesis of chorismate, that last common precursor of all three aromatic amino acids and of PABA, ubiquinone and menaquinone. Some members of this family, including an experimentally characterised member from Bacillus subtilis, are bifunctional, with a chorismate mutase domain N-terminal to this region. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.; GO: 0016832 aldehyde-lyase activity, 0009073 aromatic amino acid family biosynthetic process.
Probab=26.06 E-value=43 Score=13.64 Aligned_cols=25 Identities=24% Similarity=0.199 Sum_probs=11.1
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 00111354306899999999888863
Q gi|254780761|r 284 YILLEISSTETLERAQNIANTILATG 309 (473)
Q Consensus 284 ~lli~~~g~~~~~~~~~~~~~~~~~~ 309 (473)
.+|=...+.+..|.... ++-++..+
T Consensus 135 VLLKRG~~aTi~EwL~A-AEYIl~~G 159 (262)
T TIGR01361 135 VLLKRGMGATIEEWLEA-AEYILSEG 159 (262)
T ss_pred EEEECCCCHHHHHHHHH-HHHHHHCC
T ss_conf 55307721589999999-99998468
No 181
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=25.99 E-value=43 Score=13.63 Aligned_cols=61 Identities=10% Similarity=0.171 Sum_probs=25.9
Q ss_pred CCCCHHHHHHHHH-HCCCCCEECCHHH--HHHHHCCCCCCCCCCCCEEEECC-CHHHHHHHHHHHHHCC
Q ss_conf 6789899999997-3384418669899--87731340136766875899549-9899999999998729
Q gi|254780761|r 2 NQLSLDLIQRFIS-IVGSEGILDDQKL--ISPYLTEERKIYHGTSPLVLLPS-CTHEVSQILKLATETN 66 (473)
Q Consensus 2 ~~~~~~~~~~l~~-i~g~~~v~~d~~~--~~~~~~d~~~~~~~~p~~Vv~P~-~~~ev~~iv~~a~~~~ 66 (473)
.+.++++++.+.+ -+|++..=.||.. +..+..+. .. ...++..|. |......+...|....
T Consensus 8 t~p~p~m~~A~~~A~~gd~~yg~D~~~~~le~~~a~l---~g-~eaa~f~~sGT~aN~~al~~~~~~~~ 72 (338)
T cd06502 8 TGPTPEMLEAMAAANVGDDVYGEDPTTAKLEARAAEL---FG-KEAALFVPSGTAANQLALAAHTQPGG 72 (338)
T ss_pred CCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH---HC-CCEEEEECCCCHHHHHHHHHHCCCCC
T ss_conf 8899999999980636786667898999999999998---48-98299807841899999998569997
No 182
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=25.68 E-value=44 Score=13.60 Aligned_cols=34 Identities=9% Similarity=0.105 Sum_probs=28.3
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 6687589954998999999999987298299975
Q gi|254780761|r 40 HGTSPLVLLPSCTHEVSQILKLATETNTSITPQG 73 (473)
Q Consensus 40 ~~~p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prG 73 (473)
++.-..|+.|.+.+.+..+++.|.+.+|||+..-
T Consensus 55 ~gvDaIii~p~d~~a~~~~v~~A~~aGIpVv~~d 88 (294)
T cd06316 55 QKPDIIISIPVDPVSTAAAYKKVAEAGIKLVFMD 88 (294)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 5999999938886787999999998199679832
No 183
>PRK01474 atpC F0F1 ATP synthase subunit epsilon; Validated
Probab=25.68 E-value=35 Score=14.23 Aligned_cols=34 Identities=18% Similarity=0.345 Sum_probs=22.1
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 43323466653021122013322322233322346545431012
Q gi|254780761|r 169 LGIEAVLPTGDIWNGMHKLIKDNSRYDIRDLLIGSEGTLGIITG 212 (473)
Q Consensus 169 ~~~~vv~~~G~i~~~~~~~~~~~~G~dl~~l~~GseGtlGiITe 212 (473)
+.+++|+|++.++..--+ . =.+-|++|-+||.-.
T Consensus 5 ~~l~IVTPe~~v~~~ev~---~-------V~vPg~eG~~GILp~ 38 (112)
T PRK01474 5 ILVKIITPLSIAFEKQAK---M-------VTMPGEEGMFGVLPS 38 (112)
T ss_pred EEEEEECCCEEEEEEEEE---E-------EEEECCCCCCCCCCC
T ss_conf 599999998047713657---9-------999887507002678
No 184
>COG4706 Predicted 3-hydroxylacyl-(acyl carrier protein) dehydratase [Lipid metabolism]
Probab=25.49 E-value=22 Score=15.45 Aligned_cols=104 Identities=16% Similarity=0.210 Sum_probs=48.2
Q ss_pred CCCCCCCCCCCCEEEECCCCCHHHHHHHCCCCCC---CCCCCCCCCCCCCCHHHHHCCCCCCHHHHCCCCCCCCCCCCCC
Q ss_conf 0277421123734551144200222210012322---2344334321113112221235640001125733344433234
Q gi|254780761|r 98 MNRIRDIDLRSNTIAVDAGINLFNVQKIAEKNHR---LFPLSLPSEKYCHIGGNLATNAGGTAVLSYGNIRHLCLGIEAV 174 (473)
Q Consensus 98 mn~il~id~~~~~v~veaGv~~~~l~~~l~~~g~---~~p~~p~s~~~aTvGG~ia~~~~G~~s~~yG~~~d~v~~~~vv 174 (473)
+++|..+|.+.-.++++-- ..=..+|.++|. +|.++.-.+..+--+||+.++ -|..|.|-| .++|.+-+
T Consensus 25 Ld~VvtwdDd~~rc~atvs---p~~a~~l~~dg~Lpa~~gIElmAQAv~vh~g~l~~r-q~~ps~r~G----fLlg~Rkl 96 (161)
T COG4706 25 LDDVVTWDDDSARCRATVS---PSGAPFLDPDGNLPAWFGIELMAQAVGVHSGWLRHR-QGKPSIRLG----FLLGARKL 96 (161)
T ss_pred EEEEEEECCCEEEEEEEEC---CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCCE----EEEEEEEE
T ss_conf 3324233488378876767---888876376777545556999999999989888750-279765412----46300011
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 666530211220133223222333223465454310127994
Q gi|254780761|r 175 LPTGDIWNGMHKLIKDNSRYDIRDLLIGSEGTLGIITGAVLR 216 (473)
Q Consensus 175 ~~~G~i~~~~~~~~~~~~G~dl~~l~~GseGtlGiITevtlr 216 (473)
...-+++-.+.... ---+..+++-|-+|.. ++++|
T Consensus 97 eaha~~l~~~q~ll------~t~~e~iqddgg~g~f-~csir 131 (161)
T COG4706 97 EAHAGILPAGQTLL------ITVKELIQDDGGFGSF-ECSIR 131 (161)
T ss_pred EEECCCCCCCCCHH------HHHHHHHCCCCCCEEE-EEEEC
T ss_conf 22135457765357------9999985157884179-99871
No 185
>TIGR01622 SF-CC1 splicing factor, CC1-like family; InterPro: IPR006509 These sequences represent a subfamily of RNA splicing factors including the Pad-1 protein (Neurospora crassa), CAPER (mouse) and CC1.3 (human). All are characterised by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 human paralogs, two) RNA recognition domains. These splicing factors are closely related to the U2AF splicing factor family (IPR006529 from INTERPRO). ; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus.
Probab=25.30 E-value=45 Score=13.55 Aligned_cols=51 Identities=22% Similarity=0.281 Sum_probs=40.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEEECCCC-CCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 22322233322346545431012799404675-44321000013526899999751
Q gi|254780761|r 190 DNSRYDIRDLLIGSEGTLGIITGAVLRLLPYR-TGKQVAFIAVNSLEQALQLLQLS 244 (473)
Q Consensus 190 ~~~G~dl~~l~~GseGtlGiITevtlrl~p~p-~~~~~~~~~f~~~~~a~~~~~~~ 244 (473)
+-|.-+|.++| =-||=|-.|.|..-|.- +.+-+.|+.|.+.+.|.+|+..+
T Consensus 246 nitE~~L~~iF----epFG~ie~vqL~~D~~tG~SkGyGFiqF~~~~~A~~Al~~l 297 (531)
T TIGR01622 246 NITEQELRQIF----EPFGEIELVQLQKDPETGRSKGYGFIQFRDAEEAKEALEKL 297 (531)
T ss_pred CCCHHHHHHHH----HCCCCEEEEEEECCCCCCCCCCCCEEEECCHHHHHHHHHHH
T ss_conf 03578874242----10486124555327898813254005511167789999984
No 186
>COG0355 AtpC F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) [Energy production and conversion]
Probab=25.15 E-value=34 Score=14.31 Aligned_cols=33 Identities=39% Similarity=0.629 Sum_probs=21.6
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 4332346665302112201332232223332234654543101
Q gi|254780761|r 169 LGIEAVLPTGDIWNGMHKLIKDNSRYDIRDLLIGSEGTLGIIT 211 (473)
Q Consensus 169 ~~~~vv~~~G~i~~~~~~~~~~~~G~dl~~l~~GseGtlGiIT 211 (473)
+-+++|+|+|.++..--. .. .+-|+||-+||.-
T Consensus 4 l~l~IVsP~~~i~~g~v~---~V-------~~~t~eGe~GILp 36 (135)
T COG0355 4 LKLEIVSPEGIIYSGEVK---SV-------VVPTTEGELGILP 36 (135)
T ss_pred EEEEEECCCCEEEEEEEE---EE-------EEECCCEEEECCC
T ss_conf 489998477017703789---99-------9964770561278
No 187
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=25.07 E-value=45 Score=13.52 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=11.9
Q ss_pred CEEEECCCHHHHHHHHHHHHHCCCCE
Q ss_conf 58995499899999999998729829
Q gi|254780761|r 44 PLVLLPSCTHEVSQILKLATETNTSI 69 (473)
Q Consensus 44 ~~Vv~P~~~~ev~~iv~~a~~~~i~v 69 (473)
.+||-|.. ...+++++.++++.+
T Consensus 24 a~vIDPgd---~~~i~~~l~~~~l~l 46 (251)
T PRK10241 24 CLIVDPGE---AEPVLNAIAANNWQP 46 (251)
T ss_pred EEEECCCC---HHHHHHHHHHCCCEE
T ss_conf 89994997---099999999779917
No 188
>PRK13448 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=25.04 E-value=38 Score=13.95 Aligned_cols=33 Identities=21% Similarity=0.427 Sum_probs=20.8
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 4332346665302112201332232223332234654543101
Q gi|254780761|r 169 LGIEAVLPTGDIWNGMHKLIKDNSRYDIRDLLIGSEGTLGIIT 211 (473)
Q Consensus 169 ~~~~vv~~~G~i~~~~~~~~~~~~G~dl~~l~~GseGtlGiIT 211 (473)
+.+++|+|+|.++..--... .+-|++|-+||..
T Consensus 4 f~leIVTPe~~v~~~ev~~V----------~~p~~~Ge~GIL~ 36 (135)
T PRK13448 4 FHFDLVSPEKLAFSGEVDQV----------DIPGVEGDFGVLA 36 (135)
T ss_pred EEEEEECCCCEEEEEEEEEE----------EEECCCCCCCCCC
T ss_conf 89999989851895267999----------9957804722357
No 189
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases; InterPro: IPR005958 This entry describes tyrosine aminotransferase (2.6.1.5 from EC) as found in animals and Trypanosoma cruzi (Euglenozoa). It is the first enzyme of a pathway of tyrosine degradation via homogentisate. L-tyrosine + 2-oxoglutarate = 4-hydroxyphenylpyruvate + L-glutamate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway are included in this family. ; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding, 0006519 amino acid and derivative metabolic process.
Probab=24.63 E-value=46 Score=13.47 Aligned_cols=33 Identities=15% Similarity=0.282 Sum_probs=15.2
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
Q ss_conf 0000135268999997510233222222224517999
Q gi|254780761|r 227 AFIAVNSLEQALQLLQLSQKTAGSMLTAFELISNFIL 263 (473)
Q Consensus 227 ~~~~f~~~~~a~~~~~~~~~~~~~~~~aiel~d~~~~ 263 (473)
-+|.-+.+++.+++.++ -++..-|.|.+|+..+
T Consensus 199 sVF~~~HL~k~~~~A~k----l~i~iIADEiY~~~Vf 231 (424)
T TIGR01265 199 SVFSRDHLEKIAEVARK----LGIPIIADEIYGHLVF 231 (424)
T ss_pred CCCCHHHHHHHHHHHHH----HCCCEEEEEECCCCCC
T ss_conf 88788889999999987----0982687763164144
No 190
>KOG4660 consensus
Probab=24.38 E-value=37 Score=14.04 Aligned_cols=10 Identities=40% Similarity=0.591 Sum_probs=4.6
Q ss_pred CHHHHHCCCC
Q ss_conf 1122212356
Q gi|254780761|r 145 IGGNLATNAG 154 (473)
Q Consensus 145 vGG~ia~~~~ 154 (473)
.||.+..|++
T Consensus 232 ~~G~~~s~~~ 241 (549)
T KOG4660 232 RGGFLISNSS 241 (549)
T ss_pred CCCEECCCCC
T ss_conf 7860027987
No 191
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=24.37 E-value=46 Score=13.44 Aligned_cols=37 Identities=22% Similarity=0.305 Sum_probs=19.1
Q ss_pred CCCEEEECCCHHHHHHHHHHH-HHCCCCEEEECCCCCC
Q ss_conf 875899549989999999999-8729829997588777
Q gi|254780761|r 42 TSPLVLLPSCTHEVSQILKLA-TETNTSITPQGGNTGL 78 (473)
Q Consensus 42 ~p~~Vv~P~~~~ev~~iv~~a-~~~~i~v~prGggt~~ 78 (473)
.....+.|.+.+++++.++.+ ++.+.-++.-.||||+
T Consensus 36 v~~~~ivpDd~~~I~~~l~~~~~~~~~DlIittGGTG~ 73 (152)
T cd00886 36 VVAYEIVPDDKDEIREALIEWADEDGVDLILTTGGTGL 73 (152)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHCCCCCEEEECCCCCC
T ss_conf 88999959998999999999985369888996685558
No 192
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=24.11 E-value=47 Score=13.41 Aligned_cols=19 Identities=16% Similarity=0.242 Sum_probs=9.8
Q ss_pred HHHHHHHHHCCCCEEEECC
Q ss_conf 9999999872982999758
Q gi|254780761|r 56 SQILKLATETNTSITPQGG 74 (473)
Q Consensus 56 ~~iv~~a~~~~i~v~prGg 74 (473)
.++|+-|...++.+--+.|
T Consensus 252 ~d~v~~ar~~~l~~~df~g 270 (1234)
T PRK12270 252 EDIVRRARDGKLTADDFQG 270 (1234)
T ss_pred HHHHHHHHCCCCCHHHCCC
T ss_conf 9999998659876776078
No 193
>PRK09701 D-allose transporter subunit; Provisional
Probab=23.28 E-value=49 Score=13.31 Aligned_cols=35 Identities=6% Similarity=0.016 Sum_probs=27.8
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECC
Q ss_conf 66875899549989999999999872982999758
Q gi|254780761|r 40 HGTSPLVLLPSCTHEVSQILKLATETNTSITPQGG 74 (473)
Q Consensus 40 ~~~p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGg 74 (473)
++.-..|+-|-+.+.+..+++-|.+.+|||+..-.
T Consensus 81 ~gvdaIii~p~d~~a~~~~i~~A~~aGIpVV~~D~ 115 (311)
T PRK09701 81 KNYKGIAFAPLSSVNLVMPVARAWKKGIYLVNLDE 115 (311)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHCCCCEEECCC
T ss_conf 59999999189877889999999977991896367
No 194
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=23.11 E-value=49 Score=13.29 Aligned_cols=12 Identities=0% Similarity=0.074 Sum_probs=5.7
Q ss_pred CCHHHHHHHHHH
Q ss_conf 898999999973
Q gi|254780761|r 4 LSLDLIQRFISI 15 (473)
Q Consensus 4 ~~~~~~~~l~~i 15 (473)
.++++.+.|.+.
T Consensus 12 ~~~~m~eam~~a 23 (342)
T COG2008 12 PTPEMREALAAA 23 (342)
T ss_pred CCHHHHHHHHHC
T ss_conf 799999999855
No 195
>pfam10254 Pacs-1 PACS-1 cytosolic sorting protein. PACS-1 is a cytosolic sorting protein that directs the localisation of membrane proteins in the trans-Golgi network (TGN)/endosomal system. PACS-1 connects the clathrin adaptor AP-1 to acidic cluster sorting motifs contained in the cytoplasmic domain of cargo proteins such as furin, the cation-independent mannose-6-phosphate receptor and in viral proteins such as human immunodeficiency virus type 1 Nef.
Probab=22.86 E-value=43 Score=13.68 Aligned_cols=58 Identities=19% Similarity=0.247 Sum_probs=31.8
Q ss_pred HHHHHHHCCCCCEECCHHHHHHHHCCCCCCC-----CCCCCEEEECCCHHHHHHHH--------HHHHHCCC
Q ss_conf 9999973384418669899877313401367-----66875899549989999999--------99987298
Q gi|254780761|r 9 IQRFISIVGSEGILDDQKLISPYLTEERKIY-----HGTSPLVLLPSCTHEVSQIL--------KLATETNT 67 (473)
Q Consensus 9 ~~~l~~i~g~~~v~~d~~~~~~~~~d~~~~~-----~~~p~~Vv~P~~~~ev~~iv--------~~a~~~~i 67 (473)
.++|..|++.+.-+-|. ...-...||.+.| +....-||.+.+.+||++++ ||||-+.-
T Consensus 2 ~dQL~~il~sd~~lPe~-iiLin~sd~~g~~la~~lq~~~~pvv~t~s~adV~a~~~~iv~rIQkfCn~ns~ 72 (413)
T pfam10254 2 YDQLNQILGSDSALPES-VILVNTSDWQGQSLAELLQNQRLPVVCTCSTAEVQAVLSALLNRIQKFCNCNSS 72 (413)
T ss_pred HHHHHHHHCCCCCCCCE-EEEECCCCCCHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 45653241475668843-899547630112899998860598340698999999999999999987437888
No 196
>TIGR00730 TIGR00730 conserved hypothetical protein TIGR00730; InterPro: IPR005269 This family of conserved hypothetical proteins has no known function. .
Probab=22.36 E-value=33 Score=14.39 Aligned_cols=13 Identities=23% Similarity=0.143 Sum_probs=5.1
Q ss_pred CEEEEEEEECCCC
Q ss_conf 1012799404675
Q gi|254780761|r 209 IITGAVLRLLPYR 221 (473)
Q Consensus 209 iITevtlrl~p~p 221 (473)
++|.+.++.+.+|
T Consensus 142 ~lT~~q~G~h~kp 154 (205)
T TIGR00730 142 VLTWAQLGIHDKP 154 (205)
T ss_pred HHHHHHCCCCCCC
T ss_conf 9987721746885
No 197
>TIGR01326 OAH_OAS_sulfhy O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase; InterPro: IPR006235 This family of sequences is a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine sulfhydrylase (OAH, 2.5.1.49 from EC) and O-acetylserine sulfhydrylase (OAS, 2.5.1.47 from EC). An alternate name for OAH sulfhydrylase is homocysteine synthase.; GO: 0016765 transferase activity transferring alkyl or aryl (other than methyl) groups, 0006520 amino acid metabolic process.
Probab=22.36 E-value=51 Score=13.20 Aligned_cols=21 Identities=5% Similarity=0.173 Sum_probs=18.5
Q ss_pred CHHHHHHHHHHHHHC--CCCEEE
Q ss_conf 989999999999872--982999
Q gi|254780761|r 51 CTHEVSQILKLATET--NTSITP 71 (473)
Q Consensus 51 ~~~ev~~iv~~a~~~--~i~v~p 71 (473)
++-|+.+|.++|+++ +|||+.
T Consensus 158 ~v~Die~~a~~Ah~~PhgvPliV 180 (434)
T TIGR01326 158 NVPDIEAVAEVAHAHPHGVPLIV 180 (434)
T ss_pred CCCCHHHHHHHHHHCCCCCEEEE
T ss_conf 76785899999986789834887
No 198
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=21.77 E-value=52 Score=13.12 Aligned_cols=23 Identities=17% Similarity=0.094 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHCCCCEEEECCC
Q ss_conf 99999999998729829997588
Q gi|254780761|r 53 HEVSQILKLATETNTSITPQGGN 75 (473)
Q Consensus 53 ~ev~~iv~~a~~~~i~v~prGgg 75 (473)
+|..+-+.-+..=-|..+-.|.|
T Consensus 47 ~ea~e~L~ea~APpir~V~iG~G 69 (454)
T PRK04165 47 EEAKEKLDEALAPPVREVKIGTG 69 (454)
T ss_pred HHHHHHHHHHCCCCEEEEEECCC
T ss_conf 89999998614998048986588
No 199
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=21.76 E-value=52 Score=13.12 Aligned_cols=17 Identities=12% Similarity=-0.084 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHCCC
Q ss_conf 89999999998871537
Q gi|254780761|r 448 PTEIKIMKKIKEIFDPA 464 (473)
Q Consensus 448 ~~~~~~l~~iK~~~DP~ 464 (473)
+...+.+++.++++|=.
T Consensus 274 ~~~~~~l~~t~~av~~~ 290 (293)
T PRK11337 274 EQAEINLQKTGAAVDFF 290 (293)
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99999999999999973
No 200
>PRK09147 aminotransferase; Provisional
Probab=21.61 E-value=53 Score=13.10 Aligned_cols=11 Identities=9% Similarity=0.446 Sum_probs=5.9
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999998871
Q gi|254780761|r 451 IKIMKKIKEIF 461 (473)
Q Consensus 451 ~~~l~~iK~~~ 461 (473)
.+.+++||+.+
T Consensus 385 ~eal~Rl~~~l 395 (397)
T PRK09147 385 VEAAERIVDFL 395 (397)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999997
No 201
>TIGR00603 rad25 DNA repair helicase rad25; InterPro: IPR001161 Xeroderma pigmentosum (XP) is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer. People's skin cells with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-G is one of the most rare and phenotypically heterogeneous of XP, showing anything from slight to extreme dysfunction in DNA excision repair , . XP-G can be corrected by a 133 Kd nuclear protein, XPGC . XPGC is an acidic protein that confers normal UV resistance in expressing cells . It is a magnesium-dependent, single-strand DNA endonuclease that makes structure-specific endonucleolytic incisions in a DNA substrate containing a duplex region and single-stranded arms , . XPGC cleaves one strand of the duplex at the border with the single-stranded region . XPG belongs to a family of proteins that includes RAD2 from Saccharomyces cerevisiae (Baker's yeast) and rad13 from Schizosaccharomyces pombe (Fission yeast), which are single-stranded DNA endonucleases , ; mouse and human FEN-1, a structure-specific endonuclease; RAD2 from fission yeast and RAD27 from budding yeast; fission yeast exo1, a 5'-3' double-stranded DNA exonuclease that may act in a pathway that corrects mismatched base pairs; yeast DHS1, and yeast DIN7. Sequence alignment of this family of proteins reveals that similarities are largely confined to two regions. The first is located at the N-terminal extremity (N-region) and corresponds to the first 95 to 105 amino acids. The second region is internal (I-region) and found towards the C-terminus; it spans about 140 residues and contains a highly conserved core of 27 amino acids that includes a conserved pentapeptide (E-A-[DE]-A-[QS]). It is possible that the conserved acidic residues are involved in the catalytic mechanism of DNA excision repair in XPG. The amino acids linking the N- and I-regions are not conserved. This entry represents XP group B (XP-B) give rise to both XP and Cockayne syndrome . The DNA/RNA helicase domain IPR001650 from INTERPRO is also present in this group of proteins.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006289 nucleotide-excision repair, 0005634 nucleus.
Probab=21.38 E-value=49 Score=13.28 Aligned_cols=58 Identities=16% Similarity=0.218 Sum_probs=40.2
Q ss_pred CCCCCEEEECCCHHHHH-HHHHHHH-HCCCCEEEECCCCCCCCCCE-ECCCCCEEEEECCC
Q ss_conf 66875899549989999-9999998-72982999758877765401-04888669997630
Q gi|254780761|r 40 HGTSPLVLLPSCTHEVS-QILKLAT-ETNTSITPQGGNTGLVGGQI-PRKNRKDIILSIKR 97 (473)
Q Consensus 40 ~~~p~~Vv~P~~~~ev~-~iv~~a~-~~~i~v~prGggt~~~G~~~-p~~~~~~vvld~~~ 97 (473)
.-.|.+++||=-+.=+. +...==+ +-||-|.|.|+|-+++|=+. ++--...+||-+|.
T Consensus 263 DLKP~t~~RPYQEKSLrsKMFGNGRARSGiIVLPCGAGKsLVGvTAACTvkKs~lVLctS~ 323 (756)
T TIGR00603 263 DLKPTTVLRPYQEKSLRSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTVKKSVLVLCTSA 323 (756)
T ss_pred CCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHEEEEEEEEEEECCC
T ss_conf 5587778897511104445667861105517767788831122544202310078972671
No 202
>PRK13451 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=21.23 E-value=47 Score=13.40 Aligned_cols=34 Identities=21% Similarity=0.465 Sum_probs=20.1
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 43323466653021122013322322233322346545431012
Q gi|254780761|r 169 LGIEAVLPTGDIWNGMHKLIKDNSRYDIRDLLIGSEGTLGIITG 212 (473)
Q Consensus 169 ~~~~vv~~~G~i~~~~~~~~~~~~G~dl~~l~~GseGtlGiITe 212 (473)
+.+++|+|+|.++..-.... .+-|.+|-+||...
T Consensus 1 lkl~IVTP~~~~~~~ev~~V----------~~~t~~Ge~GILp~ 34 (101)
T PRK13451 1 MKLKIVTPYGIMYDREVDIV----------TFRTVEGEMGILPR 34 (101)
T ss_pred CEEEEECCCCEEECCEEEEE----------EEECCCCCEEECCC
T ss_conf 98999989847991667899----------99878617006699
No 203
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase homolog; InterPro: IPR012815 This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbour-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (IPR012812 from INTERPRO). Members of this family are likely to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.; GO: 0050531 mannosyl-3-phosphoglycerate phosphatase activity, 0005737 cytoplasm.
Probab=21.22 E-value=53 Score=13.05 Aligned_cols=13 Identities=23% Similarity=0.105 Sum_probs=5.3
Q ss_pred CHHHHHHHHHHHC
Q ss_conf 5268999997510
Q gi|254780761|r 233 SLEQALQLLQLSQ 245 (473)
Q Consensus 233 ~~~~a~~~~~~~~ 245 (473)
||+.|...++.+.
T Consensus 17 dw~PA~~~l~~L~ 29 (224)
T TIGR02463 17 DWQPAAPWLTRLQ 29 (224)
T ss_pred CHHHHHHHHHHHH
T ss_conf 5467799999999
No 204
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase; InterPro: IPR011183 Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyses the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (2.7.1.90 from EC). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes . IPR012828 from INTERPRO represents the ATP-dependent 6-phosphofructokinase enzyme contained within Phosphofructokinase. This entry contains primarily bacterial, plant alpha, and plant beta sequences. These may be dimeric nonallosteric enzymes (bacteria) or allosteric heterotetramers (plants) . For additional information please see , , , .; GO: 0005524 ATP binding, 0047334 diphosphate-fructose-6-phosphate 1-phosphotransferase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex.
Probab=21.07 E-value=54 Score=13.03 Aligned_cols=38 Identities=16% Similarity=0.196 Sum_probs=21.9
Q ss_pred HHCCCEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCC
Q ss_conf 81891899735556568888873178999999999887153
Q gi|254780761|r 423 SYGGSIAAEHGIGQLHKKRLEGILEPTEIKIMKKIKEIFDP 463 (473)
Q Consensus 423 ~~gG~is~eHGiG~~k~~~~~~~~~~~~~~~l~~iK~~~DP 463 (473)
..-|.||- |.=+.+|.-+|..+..-+..|-.+|++-+-
T Consensus 459 g~TGYm~~---i~NL~~p~~eW~~gg~PLt~mMn~E~R~G~ 496 (566)
T TIGR02477 459 GLTGYMST---IKNLTNPAEEWIAGGVPLTMMMNMERRHGE 496 (566)
T ss_pred CCCEEEEE---ECCCCCCHHHCCCCCCHHHHHHHHHHHCCC
T ss_conf 67604555---001157612401476224444125654579
No 205
>PRK05839 hypothetical protein; Provisional
Probab=21.06 E-value=54 Score=13.03 Aligned_cols=20 Identities=15% Similarity=0.162 Sum_probs=9.4
Q ss_pred CCCCCCCCCCCCCCCEEEECCCC
Q ss_conf 63002774211237345511442
Q gi|254780761|r 95 IKRMNRIRDIDLRSNTIAVDAGI 117 (473)
Q Consensus 95 ~~~mn~il~id~~~~~v~veaGv 117 (473)
+++... +++|+++ |.+-+|+
T Consensus 73 ~~~~~g-~~v~~~~--I~vt~Ga 92 (376)
T PRK05839 73 FKRRFN-IELKENE--LIPTFGT 92 (376)
T ss_pred HHHHHC-CCCCCCE--EEECCCH
T ss_conf 999868-9998024--9981788
No 206
>PRK05996 motB flagellar motor protein MotB; Validated
Probab=21.05 E-value=54 Score=13.03 Aligned_cols=34 Identities=12% Similarity=0.224 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECC
Q ss_conf 100131289999999999886348722899998449
Q gi|254780761|r 352 ISVPIGQIPSFLQEVKKSVSSIFPKTRIGLFGHIGD 387 (473)
Q Consensus 352 vavp~~~l~~~~~~v~~~l~~~~~~~~~~~~gH~g~ 387 (473)
.+.|-..+..+++.+-+.+.+. ..++.+-||...
T Consensus 330 SA~p~p~~~~lL~~Ia~vL~~~--pn~I~I~GHTDa 363 (431)
T PRK05996 330 SAVPRAELVLAMEKIGQLLAEQ--PGAVIIRGHTDA 363 (431)
T ss_pred CCCCCHHHHHHHHHHHHHHHCC--CCCEEEEEECCC
T ss_conf 7756889999999999999638--981799875688
No 207
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=21.05 E-value=27 Score=14.90 Aligned_cols=46 Identities=20% Similarity=0.313 Sum_probs=25.9
Q ss_pred ECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCCCEEEEECC
Q ss_conf 5499899999999998729829997588777654010488866999763
Q gi|254780761|r 48 LPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIK 96 (473)
Q Consensus 48 ~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~~~~vvld~~ 96 (473)
+|...+-+..++.- ++-+.|.|.|||-|+|-| +|.--..|+.|-.|
T Consensus 19 R~gQ~evI~~~l~g--~d~lvvmPTGgGKSlCyQ-iPAll~~G~TLVVS 64 (590)
T COG0514 19 RPGQQEIIDALLSG--KDTLVVMPTGGGKSLCYQ-IPALLLEGLTLVVS 64 (590)
T ss_pred CCCHHHHHHHHHCC--CCEEEECCCCCCCCHHHH-HHHHHCCCCEEEEC
T ss_conf 88889999999658--867998538987106743-67886599789978
No 208
>CHL00063 atpE ATP synthase CF1 epsilon subunit
Probab=20.47 E-value=49 Score=13.31 Aligned_cols=34 Identities=24% Similarity=0.514 Sum_probs=19.4
Q ss_pred CCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 44332346665302112201332232223332234654543101
Q gi|254780761|r 168 CLGIEAVLPTGDIWNGMHKLIKDNSRYDIRDLLIGSEGTLGIIT 211 (473)
Q Consensus 168 v~~~~vv~~~G~i~~~~~~~~~~~~G~dl~~l~~GseGtlGiIT 211 (473)
-+.+++|+|++.+++.-.... .+-|++|-+||..
T Consensus 2 t~~l~IvTP~~~~~~~~v~~V----------~~p~~~G~~gILp 35 (133)
T CHL00063 2 TLNLCVLTPNRIVWDSEVDEI----------ILPTNSGQIGILP 35 (133)
T ss_pred EEEEEEECCCCEEEECEEEEE----------EEECCCCCHHHHH
T ss_conf 589999959963880478899----------9956851850121
No 209
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=20.39 E-value=56 Score=12.94 Aligned_cols=33 Identities=18% Similarity=0.192 Sum_probs=15.9
Q ss_pred CCEEEECCCCHHHHHHHHHHCC-HHHHHHHHHHHHHH
Q ss_conf 9189973555656888887317-89999999998871
Q gi|254780761|r 426 GSIAAEHGIGQLHKKRLEGILE-PTEIKIMKKIKEIF 461 (473)
Q Consensus 426 G~is~eHGiG~~k~~~~~~~~~-~~~~~~l~~iK~~~ 461 (473)
|+.-+..|-|..|..|. .+ +.-.+.+++||+++
T Consensus 369 G~~FG~~g~g~vRls~a---~~~e~l~ea~~Rl~~~L 402 (402)
T TIGR03542 369 GSGFGSSGEGFVRFSAF---GKRENIVAACERIKHAL 402 (402)
T ss_pred CHHHCCCCCCEEEEEEE---CCHHHHHHHHHHHHHHC
T ss_conf 44768999896999972---99999999999999759
No 210
>pfam04541 Herpes_U34 Herpesvirus virion protein U34. The virion proteins in this family include membrane phosphoprotein-like proteins such as UL34, Epstein-Barr and R50, from dsDNA viruses, no RNA stage, Herpesvirales. The family Herpes_BFRF1, pfam05900, has been merged in.
Probab=20.34 E-value=51 Score=13.18 Aligned_cols=15 Identities=20% Similarity=0.476 Sum_probs=9.3
Q ss_pred CEEEEEEECCCCCCC
Q ss_conf 869999842778880
Q gi|254780761|r 388 GNIHFNVFPPTDENQ 402 (473)
Q Consensus 388 g~lh~~~~~~~~~~~ 402 (473)
-+|+|.++.|.+...
T Consensus 152 ~~L~F~~~gP~d~~r 166 (207)
T pfam04541 152 VQLQFRFVGPEDPSR 166 (207)
T ss_pred EEEEEEEECCCCHHH
T ss_conf 489999967898689
No 211
>KOG4656 consensus
Probab=20.26 E-value=48 Score=13.33 Aligned_cols=32 Identities=22% Similarity=0.461 Sum_probs=28.0
Q ss_pred CCCCCCCCCCCEEEECCCCCHHHHHHHCCCCCC
Q ss_conf 277421123734551144200222210012322
Q gi|254780761|r 99 NRIRDIDLRSNTIAVDAGINLFNVQKIAEKNHR 131 (473)
Q Consensus 99 n~il~id~~~~~v~veaGv~~~~l~~~l~~~g~ 131 (473)
|++ +||-+++.+.|+.-+++.++.+.|+..|.
T Consensus 35 ~~v-evdle~q~v~v~ts~p~s~i~~~le~tGr 66 (247)
T KOG4656 35 NSV-EVDLEQQIVSVETSVPPSEIQNTLENTGR 66 (247)
T ss_pred CEE-EEEHHHCEEEEECCCCHHHHHHHHHHHCH
T ss_conf 047-87710058999755896999999985080
No 212
>PRK13445 consensus
Probab=20.18 E-value=50 Score=13.21 Aligned_cols=32 Identities=22% Similarity=0.395 Sum_probs=18.9
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 433234666530211220133223222333223465454310
Q gi|254780761|r 169 LGIEAVLPTGDIWNGMHKLIKDNSRYDIRDLLIGSEGTLGII 210 (473)
Q Consensus 169 ~~~~vv~~~G~i~~~~~~~~~~~~G~dl~~l~~GseGtlGiI 210 (473)
+.+++|+|+|.++..- + ... .+-|++|-+||.
T Consensus 3 ~~l~IvtP~~~~~~~~--v-~~V-------~~p~~~G~~gIL 34 (132)
T PRK13445 3 LKLEIVTPDKRVLSEE--V-DEV-------GAPGALGEFGVL 34 (132)
T ss_pred EEEEEECCCCEEEECE--E-EEE-------EEECCCCCCEEC
T ss_conf 4999997985288045--5-799-------997684172313
Done!