HHsearch results for GI: 254780761 and protein with PDBid: 3hrd_C

>3hrd_C Nicotinate dehydrogenase FAD-subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=97.93  E-value=6.2e-06  Score=55.24  Aligned_cols=152  Identities=20%  Similarity=0.249  Sum_probs=89.7

Q ss_pred             CCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCHHHH
Q ss_conf             75899549989999999999872982999758877765401048886699976300277421123734551144200222
Q gi|254780761|r   43 SPLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDIDLRSNTIAVDAGINLFNV  122 (473)
Q Consensus        43 p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~~~~vvld~~~mn~il~id~~~~~v~veaGv~~~~l  122 (473)
                      |.-..+|.|.+|..++++-..+  ....+.+|||.+.-..-........+||++++...-.|..++..++++|++++.++
T Consensus         3 ~f~y~~P~sl~ea~~ll~~~~~--~~~~~laGGTdL~~~~~~~~~~p~~lIdl~~I~eL~~I~~~~~~l~IGA~vt~~~i   80 (296)
T 3hrd_C            3 DFEFFAPKTLEEAKGLLHQYKD--VPPAIIAGGTDLVIEINDRWEKPDVVIDIKKLKELEYIRVEENTIHIGALSTFTQI   80 (296)
T ss_dssp             CCEEECCSSHHHHHHHHHHTTT--SCCEEESSCTTHHHHHHTTSCCCSEEEECTTCGGGCCEEECSSEEEEETTCBHHHH
T ss_pred             CCEEECCCCHHHHHHHHHHCCC--CCCEEEECCCHHHHHHHCCCCCCCEEEECCCCCCCCCEEECCCEEEEEECCHHHHH
T ss_conf             8436689999999999985899--89769989755999984187899969988878455536851643897231001143


Q ss_pred             HHH--CCCCC-------CCCCCCCCCCCCCCCHHHHHCCCCCCHHHHCCCCCCCC-----CCCCCCC--CCCCCEEEEEE
Q ss_conf             210--01232-------22344334321113112221235640001125733344-----4332346--66530211220
Q gi|254780761|r  123 QKI--AEKNH-------RLFPLSLPSEKYCHIGGNLATNAGGTAVLSYGNIRHLC-----LGIEAVL--PTGDIWNGMHK  186 (473)
Q Consensus       123 ~~~--l~~~g-------~~~p~~p~s~~~aTvGG~ia~~~~G~~s~~yG~~~d~v-----~~~~vv~--~~G~i~~~~~~  186 (473)
                      .+.  +..+-       ..+ -+|+=...+||||+|++.+.         ..|.+     ++.++++  ++|+     +.
T Consensus        81 ~~~~~~~~~~p~L~~a~~~i-a~~qIRN~aTiGGNi~~a~p---------~~D~~~~Llal~A~v~l~s~~G~-----R~  145 (296)
T 3hrd_C           81 ENHPFIRSHVRALYKAASQV-GSPQIRNLGTIGGNLSTSSV---------AGDGVSAMTTLDATVVLESVRGT-----RQ  145 (296)
T ss_dssp             HHCHHHHHHCHHHHHHHHTS-SCHHHHHHCBHHHHHHHTCT---------TCHHHHHHHHTTCEEEEEETTEE-----EE
T ss_pred             HHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEECCCCCCCCC---------CCCCCHHHHHHHHHEEEEECCCC-----EE
T ss_conf             32245554558999999740-88226988883475544686---------43345699985331589836994-----89


Q ss_pred             CCCCCCCCCCCCCCCCCC-------CCCCCEEEEEEEEC
Q ss_conf             133223222333223465-------45431012799404
Q gi|254780761|r  187 LIKDNSRYDIRDLLIGSE-------GTLGIITGAVLRLL  218 (473)
Q Consensus       187 ~~~~~~G~dl~~l~~Gse-------GtlGiITevtlrl~  218 (473)
                      +       .+.++|.|..       ..--|||++.+...
T Consensus       146 i-------~~~df~~g~~~~~~t~l~~~Eii~~I~iP~~  177 (296)
T 3hrd_C          146 M-------KLTDFFDGEGFKRRNALEADEIMTEVIIDRP  177 (296)
T ss_dssp             E-------EHHHHHHCCSSSSSSSCCTTCEEEEEEEECC
T ss_pred             E-------EEHHHCCCCCCCCCCCCCCCCEEEEEEECCC
T ss_conf             8-------5034014676333454578857899996465