HHSEARCH alignment of GI: 254780761 and SCOP domain: d1ffvc2

Alignment
>d1ffvc2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Hydrogenophaga pseudoflava [TaxId: 47421]}
Probab=98.04  E-value=3.5e-06  Score=55.32  Aligned_cols=151  Identities=15%  Similarity=0.179  Sum_probs=90.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCHHH
Q ss_conf             87589954998999999999987298299975887776540104888669997630027742112373455114420022
Q gi|254780761|r   42 TSPLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDIDLRSNTIAVDAGINLFN  121 (473)
Q Consensus        42 ~p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~~~~vvld~~~mn~il~id~~~~~v~veaGv~~~~  121 (473)
                      .|.-..+|.|.+|..++++--+..   ..+.+|||.+....-........++|+++....-.|+.++..++++|++++.+
T Consensus         4 ~~f~~~~P~sl~Ea~~ll~~~~~~---a~~laGGTdl~~~~~~~~~~~~~lidl~~i~eL~~I~~~~~~l~IGA~~t~~~   80 (177)
T d1ffvc2           4 PRFEYHAPKSVGEAVALLGQLGSD---AKLLAGGHSLLPMMKLRFAQPEHLIDINRIPELRGIREEGSTVVIGAMTVEND   80 (177)
T ss_dssp             CCCEEECCSSHHHHHHHHHHHGGG---EEEESSCTTHHHHHHTTSCCCSEEEECTTCGGGCCEEEETTEEEEETTCBHHH
T ss_pred             CCCEEECCCCHHHHHHHHHHCCCC---CEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCEEEEECCEEHHH
T ss_conf             984078989999999999744999---88997076057656425368301007665220356850596699753678999


Q ss_pred             HHHHCCCCCCCCC---------CCCCCCCCCCCHHHHHCCCCCCHHHHCCCCCCC-----CCCCCCCC--CCCCCEEEEE
Q ss_conf             2210012322234---------433432111311222123564000112573334-----44332346--6653021122
Q gi|254780761|r  122 VQKIAEKNHRLFP---------LSLPSEKYCHIGGNLATNAGGTAVLSYGNIRHL-----CLGIEAVL--PTGDIWNGMH  185 (473)
Q Consensus       122 l~~~l~~~g~~~p---------~~p~s~~~aTvGG~ia~~~~G~~s~~yG~~~d~-----v~~~~vv~--~~G~i~~~~~  185 (473)
                      +.+.-.... .+|         -+|+=...+||||+|++.+..         .|+     .++.+|++  ++|+     +
T Consensus        81 l~~~~~~~~-~~~~l~~a~~~~as~qIRn~aTiGGni~~~~p~---------~D~~~~LlAl~A~v~l~~~~g~-----r  145 (177)
T d1ffvc2          81 LISSPIVQA-RLPLLAEAAKLIADPQVRNRGTIGGDIAHGDPG---------NDHPALSIAVEAHFVLEGPNGR-----R  145 (177)
T ss_dssp             HHHCHHHHH-HCHHHHHHGGGSSCTTGGGTCBHHHHHHTCCTT---------CSHHHHHHHTTCEEEEEETTEE-----E
T ss_pred             HHHCCCCCH-HHHHHHHHHHCCCCHHHEEEEEECCCEEECCCC---------CCHHHHHHHHCCEEEEECCCCE-----E
T ss_conf             973921015-789999998535892156899853636651344---------4136799862343899769956-----9


Q ss_pred             ECCCCCCCCCCCCCCCCCCC----CCCCEEEEEEEE
Q ss_conf             01332232223332234654----543101279940
Q gi|254780761|r  186 KLIKDNSRYDIRDLLIGSEG----TLGIITGAVLRL  217 (473)
Q Consensus       186 ~~~~~~~G~dl~~l~~GseG----tlGiITevtlrl  217 (473)
                      .+       .+.++|.|..-    .--+||++.+-.
T Consensus       146 ~v-------pl~df~~g~~~t~l~~~Eii~~I~iP~  174 (177)
T d1ffvc2         146 TV-------PADGFFLGTYMTLLEENEVMVEIRVPA  174 (177)
T ss_dssp             EE-------ESTTTEEETTEESCCTTCEEEEEEEEC
T ss_pred             EE-------EHHHHCCCCCCCCCCCCCEEEEEEECC
T ss_conf             98-------999942574525469986699998027


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CO dehydrogenase flavoprotein N-terminal domain-like
domain: Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain
species: Hydrogenophaga pseudoflava [TaxId: 47421]