HHSEARCH alignment of GI: 254780761 and SCOP domain: d1rm6b2

Alignment
>d1rm6b2 d.145.1.3 (B:1-216) 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, N-terminal domain {Thauera aromatica [TaxId: 59405]}
Probab=98.04  E-value=1.9e-06  Score=56.94  Aligned_cols=105  Identities=13%  Similarity=0.204  Sum_probs=69.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCC-CCCEEEECCCCCHHH
Q ss_conf             7589954998999999999987298299975887776540104888669997630027742112-373455114420022
Q gi|254780761|r   43 SPLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDIDL-RSNTIAVDAGINLFN  121 (473)
Q Consensus        43 p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~~~~vvld~~~mn~il~id~-~~~~v~veaGv~~~~  121 (473)
                      +.-..+|.|.+|..+++.   +++  -.+.+|||.+....--.......+||++++.....|.. ++..++++|++++.+
T Consensus         6 ~F~y~~P~sl~EA~~ll~---~~~--a~~lAGGTdL~~~~k~~~~~p~~lIdl~~I~eL~~I~~~~dg~l~IGA~vT~~~   80 (216)
T d1rm6b2           6 DFRTHRPATLADAVNALA---AEA--TLPLGAGTDLLPNLRRGLGHPAALVDLTGIDGLATISTLADGSLRIGAGATLEA   80 (216)
T ss_dssp             CCEEECCSSHHHHHHHTT---STT--EEEESSCTTHHHHHHTTSCCCSEEEECTTSTTTTCEEECTTSCEEEETTCBHHH
T ss_pred             CCEEECCCCHHHHHHHHC---CCC--CEEEECCCCHHHHHHCCCCCCCCEECHHHHHHHHCCCCCCCCCEEEEEEEEHHH
T ss_conf             945768999999999862---899--969977754899984365686510356562655202234687079833235688


Q ss_pred             HHH--HCCCCC--C-----CCCCCCCCCCCCCCHHHHHCCC
Q ss_conf             221--001232--2-----2344334321113112221235
Q gi|254780761|r  122 VQK--IAEKNH--R-----LFPLSLPSEKYCHIGGNLATNA  153 (473)
Q Consensus       122 l~~--~l~~~g--~-----~~p~~p~s~~~aTvGG~ia~~~  153 (473)
                      +.+  .+.++-  +     .+ -+|+=...+||||+|++++
T Consensus        81 l~~~~~l~~~~p~L~~a~~~~-as~qIRN~aTiGGNl~~~s  120 (216)
T d1rm6b2          81 IAEHDAIRTTWPALAQAAESV-AGPTHRAAATLGGNLCQDT  120 (216)
T ss_dssp             HHHCHHHHHHSHHHHHHHHHS-SCHHHHHHCBHHHHHTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-CCHHHHCCEECCCCCCCCC
T ss_conf             665332022569999999987-7999968722241146677


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CO dehydrogenase flavoprotein N-terminal domain-like
domain: 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, N-terminal domain
species: Thauera aromatica [TaxId: 59405]