HHSEARCH alignment of GI: 254780761 and SCOP domain: d2i0ka2

Alignment
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]}
Probab=100.00  E-value=2.9e-35  Score=237.87  Aligned_cols=180  Identities=20%  Similarity=0.210  Sum_probs=153.0

Q ss_pred             CCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEECCC---CCEEEEECCCCCCC-CCCCCCCC
Q ss_conf             401367668758995499899999999998729829997588777654010488---86699976300277-42112373
Q gi|254780761|r   34 EERKIYHGTSPLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKN---RKDIILSIKRMNRI-RDIDLRSN  109 (473)
Q Consensus        34 d~~~~~~~~p~~Vv~P~~~~ev~~iv~~a~~~~i~v~prGggt~~~G~~~p~~~---~~~vvld~~~mn~i-l~id~~~~  109 (473)
                      +|...+...|.+|++|+|+|||+++|++|++++++|.|||+|+|..|++.+...   ...+++++++||+| +++|+++.
T Consensus        22 ~w~~~~~~~p~~v~~P~s~edV~~~V~~A~~~~~~v~~~G~Ghs~~g~~~~~~~~~~~~~~~~~l~~~~~i~~~~d~~~~  101 (216)
T d2i0ka2          22 NWSKEIMLDATWVCSPKTPQDVVRLANWAHEHDYKIRPRGAMAGWTPLTVEKGANVEKVILADTMTHLNGITVNTGGPVA  101 (216)
T ss_dssp             CTTSSSEEEEEEEECCSSHHHHHHHHHHHHHHTCEEEEECCCCCCCTTSSCTTCCCTTEEEEECTTTSCCEEEECCSSSC
T ss_pred             HCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCC
T ss_conf             01466246879899679899999999999867715999717544569825413576337999955554566422466664


Q ss_pred             EEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCH----------HHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             455114420022221001232223443343211131122212356400----------0112573334443323466653
Q gi|254780761|r  110 TIAVDAGINLFNVQKIAEKNHRLFPLSLPSEKYCHIGGNLATNAGGTA----------VLSYGNIRHLCLGIEAVLPTGD  179 (473)
Q Consensus       110 ~v~veaGv~~~~l~~~l~~~g~~~p~~p~s~~~aTvGG~ia~~~~G~~----------s~~yG~~~d~v~~~~vv~~~G~  179 (473)
                      +++||||++|.+|.+++.++|+.++..|.. ..+||||+++++++|..          +.+||.+.|+|+++++|++||+
T Consensus       102 ~v~v~aG~~~~~l~~~l~~~g~~l~~~~~~-~~~tigG~~~~~~~g~~~~~~gg~g~~~~~yG~~~d~v~~~~vV~~dG~  180 (216)
T d2i0ka2         102 TVTAGAGASIEAIVTELQKHDLGWANLPAP-GVLSIGGALAVNAHGAALPAVGQTTLPGHTYGSLSNLVTELTAVVWNGT  180 (216)
T ss_dssp             EEEEETTSBHHHHHHHHHHTTEECSSCCSC-TTCBHHHHHHTTCCCSCCCCTTCCCCTTCCSSCGGGGEEEEEEEEECSS
T ss_pred             EEEEEEEECHHHHHHHHHHCCCCCCCCCCH-HHEEECCCCCCCCCCCCCCCCCCCCCCCCEECCHHHEEEEEEEEECCCC
T ss_conf             578986521235444454148632367871-2236415667971574113772454564225676781898999927998


Q ss_pred             CEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECC
Q ss_conf             0211220133223222333223465454310127994046
Q gi|254780761|r  180 IWNGMHKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLP  219 (473)
Q Consensus       180 i~~~~~~~~~~~~G~dl~~l~~GseGtlGiITevtlrl~p  219 (473)
                      +++....     ...|......++++.+||||++|||++|
T Consensus       181 i~~~~~~-----~~~d~~~~~~~~~~g~giit~~tl~~~P  215 (216)
T d2i0ka2         181 TYALETY-----QRNDPRITPLLTNLGRCFLTSVTMQAGP  215 (216)
T ss_dssp             SEEEEEE-----ETTSGGGHHHHSCTTSSCEEEEEEECEE
T ss_pred             EEEECCC-----CCCCCCHHHHHHCCCCEEEEEEEEEECC
T ss_conf             9994476-----6798032058874874899999999758


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cholesterol oxidase
species: Brevibacterium sterolicum [TaxId: 1702]