RPSBLAST alignment for GI: 254780761 and conserved domain: pfam01565

>gnl|CDD|144965 pfam01565, FAD_binding_4, FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyses the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidizes the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. Length = 138
 Score =  116 bits (292), Expect = 2e-26
 Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 4/136 (2%)

Query: 45  LVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDI 104
            V+ P    EV+ I++LA E    +  +GG + L+G  +       ++L + R+N I +I
Sbjct: 3   AVVRPESEEEVAAIVRLANEHGLPVLVRGGGSSLLGDAV----TGGVVLDLSRLNGILEI 58

Query: 105 DLRSNTIAVDAGINLFNVQKIAEKNHRLFPLSLPSEKYCHIGGNLATNAGGTAVLSYGNI 164
           D  + T  V+AG+ L ++ +       L  L   S     +GG +ATN GG     YG  
Sbjct: 59  DPENGTATVEAGVTLGDLVRALAAKGLLLGLEPGSGIPGTVGGAIATNGGGYGSEKYGLT 118

Query: 165 RHLCLGIEAVLPTGDI 180
           R   L +E VL  G++
Sbjct: 119 RDNVLSLEVVLADGEV 134