RPSBLAST alignment for GI: 254780761 and conserved domain: pfam01565
>gnl|CDD|144965 pfam01565, FAD_binding_4, FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyses the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidizes the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. Length = 138
Score = 116 bits (292), Expect = 2e-26
Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 4/136 (2%)
Query: 45 LVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDI 104
V+ P EV+ I++LA E + +GG + L+G + ++L + R+N I +I
Sbjct: 3 AVVRPESEEEVAAIVRLANEHGLPVLVRGGGSSLLGDAV----TGGVVLDLSRLNGILEI 58
Query: 105 DLRSNTIAVDAGINLFNVQKIAEKNHRLFPLSLPSEKYCHIGGNLATNAGGTAVLSYGNI 164
D + T V+AG+ L ++ + L L S +GG +ATN GG YG
Sbjct: 59 DPENGTATVEAGVTLGDLVRALAAKGLLLGLEPGSGIPGTVGGAIATNGGGYGSEKYGLT 118
Query: 165 RHLCLGIEAVLPTGDI 180
R L +E VL G++
Sbjct: 119 RDNVLSLEVVLADGEV 134