RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780761|ref|YP_003065174.1| probable FAD-dependent
oxidoreductase protein [Candidatus Liberibacter asiaticus str. psy62]
         (473 letters)



>gnl|CDD|129482 TIGR00387, glcD, glycolate oxidase, subunit GlcD.  This protein,
           the glycolate oxidase GlcD subunit, is similar in
           sequence to that of several D-lactate dehydrogenases,
           including that of E. coli. The glycolate oxidase has
           been found to have some D-lactate dehydrogenase
           activity.
          Length = 413

 Score =  221 bits (565), Expect = 3e-58
 Identities = 135/429 (31%), Positives = 209/429 (48%), Gaps = 19/429 (4%)

Query: 46  VLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDID 105
           V+ P  T +V++ILKL  E    I P+G  TGL GG +P +    ++L  K MN+I +ID
Sbjct: 1   VVFPKNTEQVARILKLCHEHRIPIVPRGAGTGLSGGALPEE--GGLVLVFKHMNKILEID 58

Query: 106 LRSNTIAVDAGINLFNVQKIAEKNHRLFPLSLPSEKYCHIGGNLATNAGGTAVLSYGNIR 165
           + + T  V  G+    +++  E+++  +P    S+    IGGN+A NAGG   L YG   
Sbjct: 59  VVNLTAVVQPGVRNLELEQAVEEHNLFYPPDPSSQISSTIGGNIAENAGGMRGLKYGTTV 118

Query: 166 HLCLGIEAVLPTGDIWNGMHKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQ 225
              LG+E V   G+I     K  KD + YD+  L +GSEGTLGI+T A L+LLP      
Sbjct: 119 DYVLGLEVVTADGEILRIGGKTAKDVAGYDLTGLFVGSEGTLGIVTEATLKLLPKPENIV 178

Query: 226 VAFIAVNSLEQALQLLQLSQKTAGSMLTAFELISNFILKLVVKHIPNTFSPLSDTSPWYI 285
           VA    +S+E+A+Q +      AG +    E + N  +K  V+ I     P    +   +
Sbjct: 179 VALAFFDSIEKAMQAVY-DIIAAGIIPAGMEFLDNLSIK-AVEDISGIGLPKDAGA--IL 234

Query: 286 LLEISST-ETLERAQNIANTILATGFNKKILTEWILPSLDEEKNAIWCLRNN-IPLAQKR 343
           L+EI    E +ER +     I      K    +  +   +EE+  +W  R N    A K 
Sbjct: 235 LVEIDGVHEAVERDEEKIEQI----CRKNGAVDVQIAQDEEERALLWAGRRNAFKAASKL 290

Query: 344 EGRSIKHDISVPIGQIPSFLQEVKKSVSSIFPKTRIGLFGHIGDGNIH-FNVFPPTDENQ 402
               +  D +VP  ++P  L+ +            I  FGH GDGN+H   +  P  E++
Sbjct: 291 SPLYLIEDGTVPRSKLPEALRGIADIARKYDFT--IANFGHAGDGNLHPTILTDP--EDK 346

Query: 403 DEFLSLHWNTINNIVYSVVLSYGGSIAAEHGIGQLHKKRLEGILEPTEIKIMKKIKEIFD 462
            E   +        ++ + +  GG+I+ EHGIG +  + +       E++ M+ IK+ FD
Sbjct: 347 GEMERVE--EAGGEIFELAIELGGTISGEHGIGVVKAEFMPYKFNEKELETMRAIKKAFD 404

Query: 463 PAGIMNPGK 471
           P  I+NPGK
Sbjct: 405 PDNILNPGK 413


>gnl|CDD|178402 PLN02805, PLN02805, D-lactate dehydrogenase [cytochrome].
          Length = 555

 Score =  137 bits (346), Expect = 6e-33
 Identities = 114/435 (26%), Positives = 195/435 (44%), Gaps = 27/435 (6%)

Query: 45  LVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDI 104
           +V+ P    EVS+I+K   +    I P GG T + G  +       I +S+  M  ++ +
Sbjct: 136 VVVFPRSEEEVSKIVKSCNKYKVPIVPYGGATSIEGHTLAPHGGVCIDMSL--MKSVKAL 193

Query: 105 DLRSNTIAVDAGINLFNVQKIAEKNHRLFPLSLPSEKYCHIGGNLATNAGGTAVLSYGNI 164
            +    + V+ GI    + +  E     FPL  P      IGG  AT   G+  + YG +
Sbjct: 194 HVEDMDVVVEPGIGWLELNEYLEPYGLFFPLD-PGPG-ATIGGMCATRCSGSLAVRYGTM 251

Query: 165 RHLCLGIEAVLPTGDIWNGMHKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGK 224
           R   + ++ VLP GD+     +  K  + YD+  L+IGSEGTLG+IT   LRL       
Sbjct: 252 RDNVISLKVVLPNGDVVKTASRARKSAAGYDLTRLVIGSEGTLGVITEVTLRLQKIPQHS 311

Query: 225 QVAFIAVNSLEQALQLLQLSQKTAGSMLTAFELISNFILKLVVKHIPNTFS-PLSDTSPW 283
            VA     +++ A   + ++   +G  ++  EL+    ++ +  ++ N  + P + T   
Sbjct: 312 VVAMCNFPTIKDAAD-VAIATMLSGIQVSRVELLDEVQIRAI--NMANGKNLPEAPT--- 365

Query: 284 YILLEISSTETLERAQNIANTILATGFNKKILTEWILPSLDEEKNAIWCLRNN---IPLA 340
            ++ E   TE   R Q +    +A+  N    ++++     E K  +W +R        A
Sbjct: 366 -LMFEFIGTEAYAREQTLIVQKIASKHNG---SDFVFAEEPEAKKELWKIRKEALWACFA 421

Query: 341 QKREGRSIKHDISVPIGQIPSFLQEVKKSVSSIFPKTRIGLFGHIGDGNIHFNVF--PPT 398
            + +  ++  D+ VP+  +   +   KK + +        +  H GDGN H  +   P  
Sbjct: 422 MEPKYEAMITDVCVPLSHLAELISRSKKELDA--SPLVCTVIAHAGDGNFHTIILFDPSQ 479

Query: 399 DENQDEFLSLHWNTINNIVYSVVLSYGGSIAAEHGIGQLHKKRLEGILEPTEIKIMKKIK 458
           ++ + E   L     N+ +    LS  G+   EHG+G    K LE  L    ++ MK+IK
Sbjct: 480 EDQRREAERL-----NHFMVHTALSMEGTCTGEHGVGTGKMKYLEKELGIEALQTMKRIK 534

Query: 459 EIFDPAGIMNPGKFL 473
           +  DP  IMNPGK +
Sbjct: 535 KALDPNNIMNPGKLI 549


>gnl|CDD|183043 PRK11230, PRK11230, glycolate oxidase subunit GlcD; Provisional.
          Length = 499

 Score =  132 bits (333), Expect = 2e-31
 Identities = 130/464 (28%), Positives = 205/464 (44%), Gaps = 40/464 (8%)

Query: 21  ILDDQKLISPYLTEERKIYHGTSPLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVG 80
           IL   + + PY  +    Y     LV+LP    +V  +L +       +  +G  TGL G
Sbjct: 34  ILHTDEELIPYECDGLSAYRTRPLLVVLPKQMEQVQALLAVCHRLRVPVVARGAGTGLSG 93

Query: 81  GQIPRKNRKDIILSIKRMNRIRDIDLRSNTIAVDAGI-NLFNVQKIAEKNHRLFPLSLPS 139
           G +P +  K ++L + R NRI DI+       V  G+ NL   Q  A   H L+    PS
Sbjct: 94  GALPLE--KGVLLVMARFNRILDINPVGRRARVQPGVRNLAISQAAAP--HGLYYAPDPS 149

Query: 140 EKY-CHIGGNLATNAGGTAVLSYGNIRHLCLGIEAVLPTGD-IWNGMHKLIKDNSRYDIR 197
            +  C IGGN+A NAGG   L YG   H  L +E +   G+ +  G   L  D+  +D+ 
Sbjct: 150 SQIACSIGGNVAENAGGVHCLKYGLTVHNLLKVEILTLDGEALTLGSDAL--DSPGFDLL 207

Query: 198 DLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQKTAGSMLTAFEL 257
            L  GSEG LG++T   ++LLP     +V   + +S+E+A   +      AG +    E+
Sbjct: 208 ALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVG-DIIAAGIIPGGLEM 266

Query: 258 ISNFILKLVVKHIPNTFSPLSDTSPWYILL-EISSTET--LERAQNIANTILATGFNKKI 314
           + N  ++     I   + P+   +   ILL E+   E+   E  + + + +L  G     
Sbjct: 267 MDNLSIRAAEDFIHAGY-PVDAEA---ILLCELDGVESDVQEDCERVNDILLKAG----- 317

Query: 315 LTEWILPSLDEEKNAIWCLRNNIPLAQKREGRSIKHDISVPIGQIPSF-LQEVKKSVSSI 373
            T+  L   + E+   W  R N   A  R    I  D     G IP   L  V + ++ +
Sbjct: 318 ATDVRLAQDEAERVRFWAGRKNAFPAVGR----ISPDYYCMDGTIPRRELPGVLEGIARL 373

Query: 374 FPK--TRIGLFGHIGDGNIH----FNVFPPTDENQDEFLSLHWNTINNIVYSVVLSYGGS 427
             +   R+    H GDGN+H    F+   P +  + E        +   +  + +  GGS
Sbjct: 374 SQQYGLRVANVFHAGDGNMHPLILFDANEPGELERAE-------ALGGKILELCVEVGGS 426

Query: 428 IAAEHGIGQLHKKRLEGILEPTEIKIMKKIKEIFDPAGIMNPGK 471
           I  EHG+G+    ++       EI +   +K  FDP G++NPGK
Sbjct: 427 ITGEHGVGREKINQMCAQFNSDEITLFHAVKAAFDPDGLLNPGK 470


>gnl|CDD|183022 PRK11183, PRK11183, D-lactate dehydrogenase; Provisional.
          Length = 564

 Score = 52.5 bits (127), Expect = 2e-07
 Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 10/105 (9%)

Query: 7   DLIQRFISIVGSEGILDDQKLISPYLTEERKIYH---GTSPLVLLPSCTHEVSQILKLAT 63
            LI     IVGS  +L D      Y    RK +    G +  V+ P    E+ ++L+   
Sbjct: 4   ALINELTRIVGSSHVLTDPAKTERY----RKGFRSGQGDALAVVFPGTLLELWRVLQACV 59

Query: 64  ETNTSITPQGGNTGLVGGQIPRKNRKD---IILSIKRMNRIRDID 105
             +  I  Q  NTGL GG  P  N  D   +I+S  R+++I+ ++
Sbjct: 60  AADKIIIMQAANTGLTGGSTPNGNDYDRDIVIISTLRLDKIQLLN 104


>gnl|CDD|162481 TIGR01678, FAD_lactone_ox, sugar 1,4-lactone oxidases.  This model
           represents a family of at least two different sugar 1,4
           lactone oxidases, both involved in synthesizing ascorbic
           acid or a derivative. These include L-gulonolactone
           oxidase (EC 1.1.3.8) from rat and
           D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from
           Saccharomyces cerevisiae. Members are proposed to have
           the cofactor FAD covalently bound at a site specified by
           Prosite motif PS00862; OX2_COVAL_FAD; 1.
          Length = 438

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 43/190 (22%), Positives = 78/190 (41%), Gaps = 25/190 (13%)

Query: 37  KIYHGTSPLVLL-PSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDI---- 91
           K Y   SP V   P+   EV ++L LA E    +   GG      G  P     DI    
Sbjct: 9   KTY-SASPEVYYQPTSVEEVREVLALAREQKKKVKVVGG------GHSP----SDIACTD 57

Query: 92  --ILSIKRMNRIRDIDLRSNTIAVDAGINLFNVQKIAEKNHRLFPLSLPSEKYCHIGGNL 149
             ++ + +MN++   D     I V+AGI L+ + +  +  H     +L S     + G +
Sbjct: 58  GFLIHLDKMNKVLQFDKEKKQITVEAGIRLYQLHEQLD-EHGYSMSNLGSISEVSVAGII 116

Query: 150 ATNAGGTAVLSYGNIRHLCLGIEAVLPTGDIWNGMHKLIKDNSRYDIRDLLIGSEGTLGI 209
           +T   G++ + +G +    + +  +   G++         +    D+      S G LGI
Sbjct: 117 STGTHGSS-IKHGILATQVVALTIMTADGEV-----LECSEERNADVFQAARVSLGCLGI 170

Query: 210 ITGAVLRLLP 219
           I    ++++P
Sbjct: 171 IVTVTIQVVP 180


>gnl|CDD|162480 TIGR01677, pln_FAD_oxido, plant-specific FAD-dependent
           oxidoreductase.  This model represents an
           uncharacterized plant-specific family of FAD-dependent
           oxidoreductases. At least seven distinct members are
           found in Arabidopsis thaliana. The family shows
           considerable sequence similarity to three different
           enzymes of ascorbic acid biosynthesis:
           L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from
           higher plants, D-arabinono-1,4-lactone oxidase (EC
           1.1.3.37 from Saccharomyces cerevisiae, and
           L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well
           as to a bacterial sorbitol oxidase. The class of
           compound acted on by members of this family is unknown.
          Length = 557

 Score = 41.8 bits (98), Expect = 4e-04
 Identities = 46/194 (23%), Positives = 81/194 (41%), Gaps = 38/194 (19%)

Query: 46  VLLPSCTHEVSQILKLATETNT----------SIT----PQGGNTGLVGGQIPRKNRKDI 91
           V  P    E+  ++  AT              SI     P G +  L+            
Sbjct: 35  VAYPKTEAELVSVVAAATAAGRKMKVVTRYSHSIPKLACPDGSDGALL------------ 82

Query: 92  ILSIKRMNRIRDIDLRSNTIAVDAGINLFNVQKIAEKNHRLFPLSLPSEKY---CHIGGN 148
            +S KR+N +  +D  + T+ V++G++L  +   AEK      L+LP   Y     +GG 
Sbjct: 83  -ISTKRLNHVVAVDATAMTVTVESGMSLRELIVEAEKAG----LALPYAPYWWGLTVGGM 137

Query: 149 LATNAGGTAVLSYGNIRH-LCLGIEAVLPTG--DIWNGMHKLIKDNSRYDIRDLLIGSEG 205
           + T A G+++   G+  H   +GI  V+P    + +  +  L + ++  +     + S G
Sbjct: 138 MGTGAHGSSLWGKGSAVHDYVVGIRLVVPASAAEGFAKVRILSEGDTPNEFNAAKV-SLG 196

Query: 206 TLGIITGAVLRLLP 219
            LG+I+   L L P
Sbjct: 197 VLGVISQVTLALQP 210


>gnl|CDD|183074 PRK11282, glcE, glycolate oxidase FAD binding subunit; Provisional.
          Length = 352

 Score = 33.7 bits (78), Expect = 0.11
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 10/80 (12%)

Query: 145 IGGNLATNAGGTAVLSYGNIRHLCLGIEAVLPTGDIWNGMH-----KLIKDNSRYDIRDL 199
           +GG +A    G      G +R   LG    L  G    G H     +++K+ + YD+  L
Sbjct: 94  LGGMVAAGLSGPRRPWAGAVRDFVLG--TRLINGR---GEHLRFGGQVMKNVAGYDVSRL 148

Query: 200 LIGSEGTLGIITGAVLRLLP 219
           + GS GTLG++    L++LP
Sbjct: 149 MAGSLGTLGVLLEVSLKVLP 168



 Score = 32.1 bits (74), Expect = 0.29
 Identities = 12/27 (44%), Positives = 19/27 (70%)

Query: 446 LEPTEIKIMKKIKEIFDPAGIMNPGKF 472
           L    ++I +++K+ FDPAGI NPG+ 
Sbjct: 322 LPAPLLRIHRRLKQAFDPAGIFNPGRL 348


>gnl|CDD|184385 PRK13905, murB, UDP-N-acetylenolpyruvoylglucosamine reductase;
           Provisional.
          Length = 298

 Score = 32.0 bits (74), Expect = 0.36
 Identities = 43/180 (23%), Positives = 70/180 (38%), Gaps = 34/180 (18%)

Query: 49  PSCTHEVSQILKLATETNTSITPQGGNTGLV---GGQIPRKNRKDIILSIKRMNRIRDID 105
           P+   ++ + LKL  E N  +T  G  + L+   GG I         + I+    + +I+
Sbjct: 37  PADIEDLQEFLKLLKENNIPVTVLGNGSNLLVRDGG-IR-------GVVIRLGKGLNEIE 88

Query: 106 LRSNTIAVDAGINLFNVQKIAEKNHRLFPLS-LPSEKYCHI----GGNLATNAGGTAVLS 160
           +  N I   AG  L  + + A +      LS L  E    I    GG +  NAG     +
Sbjct: 89  VEGNRITAGAGAPLIKLARFAAEAG----LSGL--EFAAGIPGTVGGAVFMNAG-----A 137

Query: 161 YG-NIRHLCLGIEAVLPTGDIWNGMHKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLP 219
           YG     +   +E +   G+I      L  +   +  R   +  EG   I+  A  +L P
Sbjct: 138 YGGETADVLESVEVLDRDGEI----KTLSNEELGFGYRHSALQEEG--LIVLSATFQLEP 191


>gnl|CDD|173113 PRK14650, PRK14650, UDP-N-acetylenolpyruvoylglucosamine reductase;
           Provisional.
          Length = 302

 Score = 31.7 bits (72), Expect = 0.40
 Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 5/89 (5%)

Query: 41  GTSPLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNR 100
           G S L L P    +   I K A E    I   GG     G  I   + ++I   I     
Sbjct: 31  GISKLFLTPKTIKDAEHIFKAAIEEKIKIFILGG-----GSNILINDEEEIDFPIIYTGH 85

Query: 101 IRDIDLRSNTIAVDAGINLFNVQKIAEKN 129
           +  I++  N I  + G N  ++ K A +N
Sbjct: 86  LNKIEIHDNQIVAECGTNFEDLCKFALQN 114


>gnl|CDD|162709 TIGR02110, PQQ_syn_pqqF, coenzyme PQQ biosynthesis probable
           peptidase PqqF.  In a subset of species that make
           coenzyme PQQ (pyrrolo-quinoline-quinone), this probable
           peptidase is found in the PQQ biosynthesis region and is
           thought to act as a protease on PqqA (TIGR02107), a
           probable peptide precursor of the coenzyme. PQQ is
           required for some glucose dehydrogenases and alcohol
           dehydrogenases.
          Length = 696

 Score = 29.5 bits (66), Expect = 2.2
 Identities = 14/54 (25%), Positives = 22/54 (40%)

Query: 206 TLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQKTAGSMLTAFELIS 259
           + G    A    LP R G+    +A +  EQAL L         +   A+ L++
Sbjct: 586 SPGTADLARPTPLPARLGRGWVPLACDGGEQALLLFCPLPTADVASEAAWRLLA 639


>gnl|CDD|185621 PTZ00442, PTZ00442, sexual stage antigen s48/45-like protein;
           Provisional.
          Length = 347

 Score = 29.1 bits (65), Expect = 2.7
 Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 12/98 (12%)

Query: 289 ISSTETLERAQNIANTILATGFNKKILTEWILPSLDEEKNAIWCLRNNIP--LAQKREGR 346
             S   ++R QN  N+     ++   ++  + P++D E+ AI+C   N       K  G 
Sbjct: 99  HGSAAIVKRKQNKYNSRDKNKYDD--VSFRVPPNMDMEEKAIYCFCQNKAKIRVNKSSGN 156

Query: 347 SIKHDI-SVPIGQ--IPSFLQEVK-----KSVSSIFPK 376
           S   DI +  I +  IPS  +++       + S++F K
Sbjct: 157 SYDKDIFNRGIVEVIIPSLPEKIDGCDFTTNTSTLFTK 194


>gnl|CDD|162837 TIGR02395, rpoN_sigma, RNA polymerase sigma-54 factor.  A sigma
           factor is a DNA-binding protein protein that binds to
           the DNA-directed RNA polymerase core to produce the
           holoenzyme capable of initiating transcription at
           specific sites. Different sigma factors act in
           vegetative growth, heat shock, extracytoplasmic
           functions (ECF), etc. This model represents the clade of
           sigma factors called sigma-54, or RpoN (unrelated to
           sigma 70-type factors such as RpoD/SigA). RpoN is
           responsible for enhancer-dependent transcription, and
           its presence characteristically is associated with
           varied panels of activators, most of which are
           enhancer-binding proteins (but see Brahmachary, et al.,
           PubMed:15231786). RpoN may be responsible for
           transcription of nitrogen fixation genes, flagellins,
           pilins, etc., and synonyms for the gene symbol rpoN,
           such as ntrA, reflect these observations.
          Length = 429

 Score = 28.4 bits (64), Expect = 3.8
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 7/53 (13%)

Query: 233 SLEQALQLLQLSQKTAGSMLTAF---ELISNFILKLVVKHIPNTFSPLSDTSP 282
            L+Q++QLLQLS       L  +     + N +L++     P     LS    
Sbjct: 10  QLQQSIQLLQLSTAE----LEKYIQQAALENPLLEIRASSAPPLDKSLSSKKS 58


>gnl|CDD|117486 pfam08919, F_actin_bind, F-actin binding.  The F-actin binding
           domain forms a compact bundle of four antiparallel
           alpha-helices, which are arranged in a left-handed
           topology. Binding of F-actin to the F-actin binding
           domain may result in cytoplasmic retention and
           subcellular distribution of the protein, as well as
           possible inhibition of protein function.
          Length = 179

 Score = 28.1 bits (62), Expect = 4.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 230 AVNSLEQALQLLQLSQKTAGSMLTAFELISNFI 262
           A+N LE  L+ LQ+   TAGS   A +  S  +
Sbjct: 135 AINKLELNLRELQICPATAGSGPAATQDFSKLL 167


>gnl|CDD|178632 PLN03083, PLN03083, E3 UFM1-protein ligase 1 homolog; Provisional.
          Length = 803

 Score = 27.9 bits (62), Expect = 5.7
 Identities = 14/41 (34%), Positives = 27/41 (65%), Gaps = 5/41 (12%)

Query: 88  RKDIILSIKRMNRIRDIDLRSNTIAVDAGINLFNVQKIAEK 128
           R +I   IK++ R+  +DL ++TI VD    L++V++ A++
Sbjct: 62  RNEIEAEIKKLGRVSLVDL-ADTIGVD----LYHVERQAQQ 97


>gnl|CDD|178084 PLN02465, PLN02465, L-galactono-1,4-lactone dehydrogenase.
          Length = 573

 Score = 27.9 bits (62), Expect = 6.7
 Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 9/110 (8%)

Query: 49  PSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDIDLRS 108
           P    E+  I+K A E    I P G  +GL    +        ++++  M+++ ++D   
Sbjct: 103 PESLEELEDIVKEAHEKGRRIRPVG--SGLSPNGLAFSREG--MVNLALMDKVLEVDKEK 158

Query: 109 NTIAVDAGINLFNVQKIAE--KNHRLFPLSLPSEKYCHIGGNLATNAGGT 156
             + V AG     VQ++ E  + H L   +  S +   IGG +   A GT
Sbjct: 159 KRVTVQAGA---RVQQVVEALRPHGLTLQNYASIREQQIGGFIQVGAHGT 205


>gnl|CDD|165411 PHA03139, PHA03139, helicase-primase primase subunit; Provisional.
          Length = 860

 Score = 27.6 bits (61), Expect = 7.8
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 243 LSQKTAGSMLTAFELISNFILKLVVKHIPNTFSPLSDTSPWYILLEISSTETL 295
           LSQ    S    F+ ++ F   L++K++   F  L  TSP++ L     TE +
Sbjct: 103 LSQTGKESEDVEFKYMAYFHKSLIIKYLTGKF--LLPTSPFWFLSTYGQTEGM 153


>gnl|CDD|185193 PRK15293, PRK15293, putative fimbrial protein SthD; Provisional.
          Length = 185

 Score = 27.3 bits (60), Expect = 8.6
 Identities = 11/35 (31%), Positives = 13/35 (37%)

Query: 45 LVLLPSCTHEVSQILKLATETNTSITPQGGNTGLV 79
          L+    CT  V   L L       I   GGNT  +
Sbjct: 42 LIYADPCTVTVPDTLSLGQYARADIAVAGGNTATI 76


>gnl|CDD|183012 PRK11172, dkgB, 2,5-diketo-D-gluconate reductase B; Provisional.
          Length = 267

 Score = 27.3 bits (61), Expect = 8.9
 Identities = 13/34 (38%), Positives = 24/34 (70%), Gaps = 1/34 (2%)

Query: 5   SLDLIQRFISIVGSEGILDDQKLISPYLTEERKI 38
           ++ L+++ I+ VG+E I  +Q  +SPYL + RK+
Sbjct: 132 TIALMKQAIAAVGAENIATNQIELSPYL-QNRKV 164


>gnl|CDD|180864 PRK07168, PRK07168, bifunctional uroporphyrinogen-III
           methyltransferase/uroporphyrinogen-III synthase;
           Reviewed.
          Length = 474

 Score = 27.3 bits (60), Expect = 9.5
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 13/72 (18%)

Query: 34  EERKIYHGTSPLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIIL 93
           +ERK  HG    VL  S T++ S + +   E    I            QIP   +++  L
Sbjct: 244 KERKPLHGKK--VLFTSATNKTSVMKQKLQEAGAEIY-----------QIPTFKKEEYTL 290

Query: 94  SIKRMNRIRDID 105
           +++++N I +++
Sbjct: 291 TLEQINEIFNVN 302


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.319    0.138    0.401 

Gapped
Lambda     K      H
   0.267   0.0738    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 7,757,415
Number of extensions: 510097
Number of successful extensions: 933
Number of sequences better than 10.0: 1
Number of HSP's gapped: 919
Number of HSP's successfully gapped: 30
Length of query: 473
Length of database: 5,994,473
Length adjustment: 97
Effective length of query: 376
Effective length of database: 3,898,497
Effective search space: 1465834872
Effective search space used: 1465834872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.5 bits)