RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780761|ref|YP_003065174.1| probable FAD-dependent oxidoreductase protein [Candidatus Liberibacter asiaticus str. psy62] (473 letters) >gnl|CDD|129482 TIGR00387, glcD, glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity. Length = 413 Score = 221 bits (565), Expect = 3e-58 Identities = 135/429 (31%), Positives = 209/429 (48%), Gaps = 19/429 (4%) Query: 46 VLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDID 105 V+ P T +V++ILKL E I P+G TGL GG +P + ++L K MN+I +ID Sbjct: 1 VVFPKNTEQVARILKLCHEHRIPIVPRGAGTGLSGGALPEE--GGLVLVFKHMNKILEID 58 Query: 106 LRSNTIAVDAGINLFNVQKIAEKNHRLFPLSLPSEKYCHIGGNLATNAGGTAVLSYGNIR 165 + + T V G+ +++ E+++ +P S+ IGGN+A NAGG L YG Sbjct: 59 VVNLTAVVQPGVRNLELEQAVEEHNLFYPPDPSSQISSTIGGNIAENAGGMRGLKYGTTV 118 Query: 166 HLCLGIEAVLPTGDIWNGMHKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQ 225 LG+E V G+I K KD + YD+ L +GSEGTLGI+T A L+LLP Sbjct: 119 DYVLGLEVVTADGEILRIGGKTAKDVAGYDLTGLFVGSEGTLGIVTEATLKLLPKPENIV 178 Query: 226 VAFIAVNSLEQALQLLQLSQKTAGSMLTAFELISNFILKLVVKHIPNTFSPLSDTSPWYI 285 VA +S+E+A+Q + AG + E + N +K V+ I P + + Sbjct: 179 VALAFFDSIEKAMQAVY-DIIAAGIIPAGMEFLDNLSIK-AVEDISGIGLPKDAGA--IL 234 Query: 286 LLEISST-ETLERAQNIANTILATGFNKKILTEWILPSLDEEKNAIWCLRNN-IPLAQKR 343 L+EI E +ER + I K + + +EE+ +W R N A K Sbjct: 235 LVEIDGVHEAVERDEEKIEQI----CRKNGAVDVQIAQDEEERALLWAGRRNAFKAASKL 290 Query: 344 EGRSIKHDISVPIGQIPSFLQEVKKSVSSIFPKTRIGLFGHIGDGNIH-FNVFPPTDENQ 402 + D +VP ++P L+ + I FGH GDGN+H + P E++ Sbjct: 291 SPLYLIEDGTVPRSKLPEALRGIADIARKYDFT--IANFGHAGDGNLHPTILTDP--EDK 346 Query: 403 DEFLSLHWNTINNIVYSVVLSYGGSIAAEHGIGQLHKKRLEGILEPTEIKIMKKIKEIFD 462 E + ++ + + GG+I+ EHGIG + + + E++ M+ IK+ FD Sbjct: 347 GEMERVE--EAGGEIFELAIELGGTISGEHGIGVVKAEFMPYKFNEKELETMRAIKKAFD 404 Query: 463 PAGIMNPGK 471 P I+NPGK Sbjct: 405 PDNILNPGK 413 >gnl|CDD|178402 PLN02805, PLN02805, D-lactate dehydrogenase [cytochrome]. Length = 555 Score = 137 bits (346), Expect = 6e-33 Identities = 114/435 (26%), Positives = 195/435 (44%), Gaps = 27/435 (6%) Query: 45 LVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDI 104 +V+ P EVS+I+K + I P GG T + G + I +S+ M ++ + Sbjct: 136 VVVFPRSEEEVSKIVKSCNKYKVPIVPYGGATSIEGHTLAPHGGVCIDMSL--MKSVKAL 193 Query: 105 DLRSNTIAVDAGINLFNVQKIAEKNHRLFPLSLPSEKYCHIGGNLATNAGGTAVLSYGNI 164 + + V+ GI + + E FPL P IGG AT G+ + YG + Sbjct: 194 HVEDMDVVVEPGIGWLELNEYLEPYGLFFPLD-PGPG-ATIGGMCATRCSGSLAVRYGTM 251 Query: 165 RHLCLGIEAVLPTGDIWNGMHKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGK 224 R + ++ VLP GD+ + K + YD+ L+IGSEGTLG+IT LRL Sbjct: 252 RDNVISLKVVLPNGDVVKTASRARKSAAGYDLTRLVIGSEGTLGVITEVTLRLQKIPQHS 311 Query: 225 QVAFIAVNSLEQALQLLQLSQKTAGSMLTAFELISNFILKLVVKHIPNTFS-PLSDTSPW 283 VA +++ A + ++ +G ++ EL+ ++ + ++ N + P + T Sbjct: 312 VVAMCNFPTIKDAAD-VAIATMLSGIQVSRVELLDEVQIRAI--NMANGKNLPEAPT--- 365 Query: 284 YILLEISSTETLERAQNIANTILATGFNKKILTEWILPSLDEEKNAIWCLRNN---IPLA 340 ++ E TE R Q + +A+ N ++++ E K +W +R A Sbjct: 366 -LMFEFIGTEAYAREQTLIVQKIASKHNG---SDFVFAEEPEAKKELWKIRKEALWACFA 421 Query: 341 QKREGRSIKHDISVPIGQIPSFLQEVKKSVSSIFPKTRIGLFGHIGDGNIHFNVF--PPT 398 + + ++ D+ VP+ + + KK + + + H GDGN H + P Sbjct: 422 MEPKYEAMITDVCVPLSHLAELISRSKKELDA--SPLVCTVIAHAGDGNFHTIILFDPSQ 479 Query: 399 DENQDEFLSLHWNTINNIVYSVVLSYGGSIAAEHGIGQLHKKRLEGILEPTEIKIMKKIK 458 ++ + E L N+ + LS G+ EHG+G K LE L ++ MK+IK Sbjct: 480 EDQRREAERL-----NHFMVHTALSMEGTCTGEHGVGTGKMKYLEKELGIEALQTMKRIK 534 Query: 459 EIFDPAGIMNPGKFL 473 + DP IMNPGK + Sbjct: 535 KALDPNNIMNPGKLI 549 >gnl|CDD|183043 PRK11230, PRK11230, glycolate oxidase subunit GlcD; Provisional. Length = 499 Score = 132 bits (333), Expect = 2e-31 Identities = 130/464 (28%), Positives = 205/464 (44%), Gaps = 40/464 (8%) Query: 21 ILDDQKLISPYLTEERKIYHGTSPLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVG 80 IL + + PY + Y LV+LP +V +L + + +G TGL G Sbjct: 34 ILHTDEELIPYECDGLSAYRTRPLLVVLPKQMEQVQALLAVCHRLRVPVVARGAGTGLSG 93 Query: 81 GQIPRKNRKDIILSIKRMNRIRDIDLRSNTIAVDAGI-NLFNVQKIAEKNHRLFPLSLPS 139 G +P + K ++L + R NRI DI+ V G+ NL Q A H L+ PS Sbjct: 94 GALPLE--KGVLLVMARFNRILDINPVGRRARVQPGVRNLAISQAAAP--HGLYYAPDPS 149 Query: 140 EKY-CHIGGNLATNAGGTAVLSYGNIRHLCLGIEAVLPTGD-IWNGMHKLIKDNSRYDIR 197 + C IGGN+A NAGG L YG H L +E + G+ + G L D+ +D+ Sbjct: 150 SQIACSIGGNVAENAGGVHCLKYGLTVHNLLKVEILTLDGEALTLGSDAL--DSPGFDLL 207 Query: 198 DLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQKTAGSMLTAFEL 257 L GSEG LG++T ++LLP +V + +S+E+A + AG + E+ Sbjct: 208 ALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVG-DIIAAGIIPGGLEM 266 Query: 258 ISNFILKLVVKHIPNTFSPLSDTSPWYILL-EISSTET--LERAQNIANTILATGFNKKI 314 + N ++ I + P+ + ILL E+ E+ E + + + +L G Sbjct: 267 MDNLSIRAAEDFIHAGY-PVDAEA---ILLCELDGVESDVQEDCERVNDILLKAG----- 317 Query: 315 LTEWILPSLDEEKNAIWCLRNNIPLAQKREGRSIKHDISVPIGQIPSF-LQEVKKSVSSI 373 T+ L + E+ W R N A R I D G IP L V + ++ + Sbjct: 318 ATDVRLAQDEAERVRFWAGRKNAFPAVGR----ISPDYYCMDGTIPRRELPGVLEGIARL 373 Query: 374 FPK--TRIGLFGHIGDGNIH----FNVFPPTDENQDEFLSLHWNTINNIVYSVVLSYGGS 427 + R+ H GDGN+H F+ P + + E + + + + GGS Sbjct: 374 SQQYGLRVANVFHAGDGNMHPLILFDANEPGELERAE-------ALGGKILELCVEVGGS 426 Query: 428 IAAEHGIGQLHKKRLEGILEPTEIKIMKKIKEIFDPAGIMNPGK 471 I EHG+G+ ++ EI + +K FDP G++NPGK Sbjct: 427 ITGEHGVGREKINQMCAQFNSDEITLFHAVKAAFDPDGLLNPGK 470 >gnl|CDD|183022 PRK11183, PRK11183, D-lactate dehydrogenase; Provisional. Length = 564 Score = 52.5 bits (127), Expect = 2e-07 Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 10/105 (9%) Query: 7 DLIQRFISIVGSEGILDDQKLISPYLTEERKIYH---GTSPLVLLPSCTHEVSQILKLAT 63 LI IVGS +L D Y RK + G + V+ P E+ ++L+ Sbjct: 4 ALINELTRIVGSSHVLTDPAKTERY----RKGFRSGQGDALAVVFPGTLLELWRVLQACV 59 Query: 64 ETNTSITPQGGNTGLVGGQIPRKNRKD---IILSIKRMNRIRDID 105 + I Q NTGL GG P N D +I+S R+++I+ ++ Sbjct: 60 AADKIIIMQAANTGLTGGSTPNGNDYDRDIVIISTLRLDKIQLLN 104 >gnl|CDD|162481 TIGR01678, FAD_lactone_ox, sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1. Length = 438 Score = 46.8 bits (111), Expect = 1e-05 Identities = 43/190 (22%), Positives = 78/190 (41%), Gaps = 25/190 (13%) Query: 37 KIYHGTSPLVLL-PSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDI---- 91 K Y SP V P+ EV ++L LA E + GG G P DI Sbjct: 9 KTY-SASPEVYYQPTSVEEVREVLALAREQKKKVKVVGG------GHSP----SDIACTD 57 Query: 92 --ILSIKRMNRIRDIDLRSNTIAVDAGINLFNVQKIAEKNHRLFPLSLPSEKYCHIGGNL 149 ++ + +MN++ D I V+AGI L+ + + + H +L S + G + Sbjct: 58 GFLIHLDKMNKVLQFDKEKKQITVEAGIRLYQLHEQLD-EHGYSMSNLGSISEVSVAGII 116 Query: 150 ATNAGGTAVLSYGNIRHLCLGIEAVLPTGDIWNGMHKLIKDNSRYDIRDLLIGSEGTLGI 209 +T G++ + +G + + + + G++ + D+ S G LGI Sbjct: 117 STGTHGSS-IKHGILATQVVALTIMTADGEV-----LECSEERNADVFQAARVSLGCLGI 170 Query: 210 ITGAVLRLLP 219 I ++++P Sbjct: 171 IVTVTIQVVP 180 >gnl|CDD|162480 TIGR01677, pln_FAD_oxido, plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown. Length = 557 Score = 41.8 bits (98), Expect = 4e-04 Identities = 46/194 (23%), Positives = 81/194 (41%), Gaps = 38/194 (19%) Query: 46 VLLPSCTHEVSQILKLATETNT----------SIT----PQGGNTGLVGGQIPRKNRKDI 91 V P E+ ++ AT SI P G + L+ Sbjct: 35 VAYPKTEAELVSVVAAATAAGRKMKVVTRYSHSIPKLACPDGSDGALL------------ 82 Query: 92 ILSIKRMNRIRDIDLRSNTIAVDAGINLFNVQKIAEKNHRLFPLSLPSEKY---CHIGGN 148 +S KR+N + +D + T+ V++G++L + AEK L+LP Y +GG Sbjct: 83 -ISTKRLNHVVAVDATAMTVTVESGMSLRELIVEAEKAG----LALPYAPYWWGLTVGGM 137 Query: 149 LATNAGGTAVLSYGNIRH-LCLGIEAVLPTG--DIWNGMHKLIKDNSRYDIRDLLIGSEG 205 + T A G+++ G+ H +GI V+P + + + L + ++ + + S G Sbjct: 138 MGTGAHGSSLWGKGSAVHDYVVGIRLVVPASAAEGFAKVRILSEGDTPNEFNAAKV-SLG 196 Query: 206 TLGIITGAVLRLLP 219 LG+I+ L L P Sbjct: 197 VLGVISQVTLALQP 210 >gnl|CDD|183074 PRK11282, glcE, glycolate oxidase FAD binding subunit; Provisional. Length = 352 Score = 33.7 bits (78), Expect = 0.11 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 10/80 (12%) Query: 145 IGGNLATNAGGTAVLSYGNIRHLCLGIEAVLPTGDIWNGMH-----KLIKDNSRYDIRDL 199 +GG +A G G +R LG L G G H +++K+ + YD+ L Sbjct: 94 LGGMVAAGLSGPRRPWAGAVRDFVLG--TRLINGR---GEHLRFGGQVMKNVAGYDVSRL 148 Query: 200 LIGSEGTLGIITGAVLRLLP 219 + GS GTLG++ L++LP Sbjct: 149 MAGSLGTLGVLLEVSLKVLP 168 Score = 32.1 bits (74), Expect = 0.29 Identities = 12/27 (44%), Positives = 19/27 (70%) Query: 446 LEPTEIKIMKKIKEIFDPAGIMNPGKF 472 L ++I +++K+ FDPAGI NPG+ Sbjct: 322 LPAPLLRIHRRLKQAFDPAGIFNPGRL 348 >gnl|CDD|184385 PRK13905, murB, UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional. Length = 298 Score = 32.0 bits (74), Expect = 0.36 Identities = 43/180 (23%), Positives = 70/180 (38%), Gaps = 34/180 (18%) Query: 49 PSCTHEVSQILKLATETNTSITPQGGNTGLV---GGQIPRKNRKDIILSIKRMNRIRDID 105 P+ ++ + LKL E N +T G + L+ GG I + I+ + +I+ Sbjct: 37 PADIEDLQEFLKLLKENNIPVTVLGNGSNLLVRDGG-IR-------GVVIRLGKGLNEIE 88 Query: 106 LRSNTIAVDAGINLFNVQKIAEKNHRLFPLS-LPSEKYCHI----GGNLATNAGGTAVLS 160 + N I AG L + + A + LS L E I GG + NAG + Sbjct: 89 VEGNRITAGAGAPLIKLARFAAEAG----LSGL--EFAAGIPGTVGGAVFMNAG-----A 137 Query: 161 YG-NIRHLCLGIEAVLPTGDIWNGMHKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLP 219 YG + +E + G+I L + + R + EG I+ A +L P Sbjct: 138 YGGETADVLESVEVLDRDGEI----KTLSNEELGFGYRHSALQEEG--LIVLSATFQLEP 191 >gnl|CDD|173113 PRK14650, PRK14650, UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional. Length = 302 Score = 31.7 bits (72), Expect = 0.40 Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 5/89 (5%) Query: 41 GTSPLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNR 100 G S L L P + I K A E I GG G I + ++I I Sbjct: 31 GISKLFLTPKTIKDAEHIFKAAIEEKIKIFILGG-----GSNILINDEEEIDFPIIYTGH 85 Query: 101 IRDIDLRSNTIAVDAGINLFNVQKIAEKN 129 + I++ N I + G N ++ K A +N Sbjct: 86 LNKIEIHDNQIVAECGTNFEDLCKFALQN 114 >gnl|CDD|162709 TIGR02110, PQQ_syn_pqqF, coenzyme PQQ biosynthesis probable peptidase PqqF. In a subset of species that make coenzyme PQQ (pyrrolo-quinoline-quinone), this probable peptidase is found in the PQQ biosynthesis region and is thought to act as a protease on PqqA (TIGR02107), a probable peptide precursor of the coenzyme. PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Length = 696 Score = 29.5 bits (66), Expect = 2.2 Identities = 14/54 (25%), Positives = 22/54 (40%) Query: 206 TLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQKTAGSMLTAFELIS 259 + G A LP R G+ +A + EQAL L + A+ L++ Sbjct: 586 SPGTADLARPTPLPARLGRGWVPLACDGGEQALLLFCPLPTADVASEAAWRLLA 639 >gnl|CDD|185621 PTZ00442, PTZ00442, sexual stage antigen s48/45-like protein; Provisional. Length = 347 Score = 29.1 bits (65), Expect = 2.7 Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 12/98 (12%) Query: 289 ISSTETLERAQNIANTILATGFNKKILTEWILPSLDEEKNAIWCLRNNIP--LAQKREGR 346 S ++R QN N+ ++ ++ + P++D E+ AI+C N K G Sbjct: 99 HGSAAIVKRKQNKYNSRDKNKYDD--VSFRVPPNMDMEEKAIYCFCQNKAKIRVNKSSGN 156 Query: 347 SIKHDI-SVPIGQ--IPSFLQEVK-----KSVSSIFPK 376 S DI + I + IPS +++ + S++F K Sbjct: 157 SYDKDIFNRGIVEVIIPSLPEKIDGCDFTTNTSTLFTK 194 >gnl|CDD|162837 TIGR02395, rpoN_sigma, RNA polymerase sigma-54 factor. A sigma factor is a DNA-binding protein protein that binds to the DNA-directed RNA polymerase core to produce the holoenzyme capable of initiating transcription at specific sites. Different sigma factors act in vegetative growth, heat shock, extracytoplasmic functions (ECF), etc. This model represents the clade of sigma factors called sigma-54, or RpoN (unrelated to sigma 70-type factors such as RpoD/SigA). RpoN is responsible for enhancer-dependent transcription, and its presence characteristically is associated with varied panels of activators, most of which are enhancer-binding proteins (but see Brahmachary, et al., PubMed:15231786). RpoN may be responsible for transcription of nitrogen fixation genes, flagellins, pilins, etc., and synonyms for the gene symbol rpoN, such as ntrA, reflect these observations. Length = 429 Score = 28.4 bits (64), Expect = 3.8 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 7/53 (13%) Query: 233 SLEQALQLLQLSQKTAGSMLTAF---ELISNFILKLVVKHIPNTFSPLSDTSP 282 L+Q++QLLQLS L + + N +L++ P LS Sbjct: 10 QLQQSIQLLQLSTAE----LEKYIQQAALENPLLEIRASSAPPLDKSLSSKKS 58 >gnl|CDD|117486 pfam08919, F_actin_bind, F-actin binding. The F-actin binding domain forms a compact bundle of four antiparallel alpha-helices, which are arranged in a left-handed topology. Binding of F-actin to the F-actin binding domain may result in cytoplasmic retention and subcellular distribution of the protein, as well as possible inhibition of protein function. Length = 179 Score = 28.1 bits (62), Expect = 4.5 Identities = 13/33 (39%), Positives = 18/33 (54%) Query: 230 AVNSLEQALQLLQLSQKTAGSMLTAFELISNFI 262 A+N LE L+ LQ+ TAGS A + S + Sbjct: 135 AINKLELNLRELQICPATAGSGPAATQDFSKLL 167 >gnl|CDD|178632 PLN03083, PLN03083, E3 UFM1-protein ligase 1 homolog; Provisional. Length = 803 Score = 27.9 bits (62), Expect = 5.7 Identities = 14/41 (34%), Positives = 27/41 (65%), Gaps = 5/41 (12%) Query: 88 RKDIILSIKRMNRIRDIDLRSNTIAVDAGINLFNVQKIAEK 128 R +I IK++ R+ +DL ++TI VD L++V++ A++ Sbjct: 62 RNEIEAEIKKLGRVSLVDL-ADTIGVD----LYHVERQAQQ 97 >gnl|CDD|178084 PLN02465, PLN02465, L-galactono-1,4-lactone dehydrogenase. Length = 573 Score = 27.9 bits (62), Expect = 6.7 Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 9/110 (8%) Query: 49 PSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDIDLRS 108 P E+ I+K A E I P G +GL + ++++ M+++ ++D Sbjct: 103 PESLEELEDIVKEAHEKGRRIRPVG--SGLSPNGLAFSREG--MVNLALMDKVLEVDKEK 158 Query: 109 NTIAVDAGINLFNVQKIAE--KNHRLFPLSLPSEKYCHIGGNLATNAGGT 156 + V AG VQ++ E + H L + S + IGG + A GT Sbjct: 159 KRVTVQAGA---RVQQVVEALRPHGLTLQNYASIREQQIGGFIQVGAHGT 205 >gnl|CDD|165411 PHA03139, PHA03139, helicase-primase primase subunit; Provisional. Length = 860 Score = 27.6 bits (61), Expect = 7.8 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%) Query: 243 LSQKTAGSMLTAFELISNFILKLVVKHIPNTFSPLSDTSPWYILLEISSTETL 295 LSQ S F+ ++ F L++K++ F L TSP++ L TE + Sbjct: 103 LSQTGKESEDVEFKYMAYFHKSLIIKYLTGKF--LLPTSPFWFLSTYGQTEGM 153 >gnl|CDD|185193 PRK15293, PRK15293, putative fimbrial protein SthD; Provisional. Length = 185 Score = 27.3 bits (60), Expect = 8.6 Identities = 11/35 (31%), Positives = 13/35 (37%) Query: 45 LVLLPSCTHEVSQILKLATETNTSITPQGGNTGLV 79 L+ CT V L L I GGNT + Sbjct: 42 LIYADPCTVTVPDTLSLGQYARADIAVAGGNTATI 76 >gnl|CDD|183012 PRK11172, dkgB, 2,5-diketo-D-gluconate reductase B; Provisional. Length = 267 Score = 27.3 bits (61), Expect = 8.9 Identities = 13/34 (38%), Positives = 24/34 (70%), Gaps = 1/34 (2%) Query: 5 SLDLIQRFISIVGSEGILDDQKLISPYLTEERKI 38 ++ L+++ I+ VG+E I +Q +SPYL + RK+ Sbjct: 132 TIALMKQAIAAVGAENIATNQIELSPYL-QNRKV 164 >gnl|CDD|180864 PRK07168, PRK07168, bifunctional uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase; Reviewed. Length = 474 Score = 27.3 bits (60), Expect = 9.5 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 13/72 (18%) Query: 34 EERKIYHGTSPLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIIL 93 +ERK HG VL S T++ S + + E I QIP +++ L Sbjct: 244 KERKPLHGKK--VLFTSATNKTSVMKQKLQEAGAEIY-----------QIPTFKKEEYTL 290 Query: 94 SIKRMNRIRDID 105 +++++N I +++ Sbjct: 291 TLEQINEIFNVN 302 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.319 0.138 0.401 Gapped Lambda K H 0.267 0.0738 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 7,757,415 Number of extensions: 510097 Number of successful extensions: 933 Number of sequences better than 10.0: 1 Number of HSP's gapped: 919 Number of HSP's successfully gapped: 30 Length of query: 473 Length of database: 5,994,473 Length adjustment: 97 Effective length of query: 376 Effective length of database: 3,898,497 Effective search space: 1465834872 Effective search space used: 1465834872 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 59 (26.5 bits)