RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780761|ref|YP_003065174.1| probable FAD-dependent
oxidoreductase protein [Candidatus Liberibacter asiaticus str. psy62]
(473 letters)
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A
{Escherichia coli} SCOP: d.58.32.2 d.145.1.1
Length = 571
Score = 303 bits (777), Expect = 5e-83
Identities = 86/582 (14%), Positives = 163/582 (28%), Gaps = 137/582 (23%)
Query: 1 MNQLSL----DLIQRFISIVGSEGILDDQKLISPYLTEERKIYHGTSPLVLLPSCTHEVS 56
M+ ++ + +VGS +L D + Y R G + V+ P E+
Sbjct: 1 MSSMTTTDNKAFLNELARLVGSSHLLTDPAKTARYRKGFRS-GQGDALAVVFPGSLLELW 59
Query: 57 QILKLATETNTSITPQGGNTGLVGGQIPRKN---RKDIILSIKRMNRIRDIDLRSNTIAV 113
++LK + I Q NTGL G P N R +I+S R++++ + + +
Sbjct: 60 RVLKACVTADKIILMQAANTGLTEGSTPNGNDYDRDVVIISTLRLDKLHVLG-KGEQVLA 118
Query: 114 DAGINLFNVQKIAEKNHRLFPLSLPSE-KYCHIGGNLATNAGGTAVLSYGNIRHLCLGIE 172
G L++++K + R + S + G + N+GG+ V + L
Sbjct: 119 YPGTTLYSLEKALKPLGREPHSVIGSSCIGASVIGGICNNSGGSLVQRGPAYTEMSLF-A 177
Query: 173 AVLPTGDIWNGMH-----------------------------KLIKDNSRY--------- 194
+ G + H + Y
Sbjct: 178 RINEDGKLTLVNHLGIDLGETPEQILSKLDDDRIKDDDVRHDGRHAHDYDYVHRVRDIEA 237
Query: 195 --------DIRDL--LIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLS 244
D L G G L + L +QV +I N E ++ +
Sbjct: 238 DTPARYNADPDRLFESSGCAGKLAVFA-VRLDTFEAEKNQQVFYIGTNQPEVLTEIRRHI 296
Query: 245 QKTAGSMLTAFELISNFILKLVVKHIPNTFSPLSDT------------SPWYILLEISST 292
++ A E + I + K+ +TF + +LE
Sbjct: 297 LANFENLPVAGEYMHRDIYDIAEKYGKDTFLMIDKLGTDKMPFFFNLKGRTDAMLEKVKF 356
Query: 293 ---ETLERAQNIANTILATGFNKK-----------ILTEWILPSLDE------------- 325
+RA + + + +L + + E
Sbjct: 357 FRPHFTDRAMQKFGHLFPSHLPPRMKNWRDKYEHHLLLKMAGDGVGEAKSWLVDYFKQAE 416
Query: 326 ---------EKNAIWCLRNNI--------PLAQKREGRSIKHDISVPIGQIPSFLQEVKK 368
E + + R + + DI++ + +
Sbjct: 417 GDFFVCTPEEGSKAFLHRFAAAGAAIRYQAVHSDEVEDILALDIALRRNDTEWYEHLPPE 476
Query: 369 SVSSIFPKTRIGLFGHIGDGNIHFNVFPPTDENQDEFLSLHWNTINNIVYSVVLSYGGSI 428
S + +GH H + + + ++ G
Sbjct: 477 IDSQL---VHKLYYGHFMCYVFHQDYIVKKGVDVHAL--------KEQMLELLQQRGAQY 525
Query: 429 AAEHGIGQLHKKRLEGILEPTEIKIMKKIKEIFDPAGIMNPG 470
AEH +G L+K + ++K DP MNPG
Sbjct: 526 PAEHNVGHLYK----------APETLQKFYRENDPTNSMNPG 557
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity;
HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP:
d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A*
1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A*
1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A*
Length = 560
Score = 276 bits (707), Expect = 7e-75
Identities = 82/525 (15%), Positives = 154/525 (29%), Gaps = 64/525 (12%)
Query: 8 LIQRFISIVGSEGILDDQKLISPYLTEERKIYHGTSP------------LVLLPSCTHEV 55
IQ I IVGSE + K H P ++ P +V
Sbjct: 24 FIQDIIRIVGSENVEVISSKDQIVDGSYMKPTHTHDPTHVMDQDYFLASAIVAPRNVADV 83
Query: 56 SQILKLATETNTSITP--QGGNTGLVGGQIPRKNRKDIILSI-KRMNRIRDIDLRSNTIA 112
I+ LA + + + P G N+G G ++L + K MNR+ ++++
Sbjct: 84 QSIVGLANKFSFPLWPISIGRNSGYGGAAPRVSG--SVVLDMGKNMNRVLEVNVEGAYCV 141
Query: 113 VDAGINLFNVQKIAEKNHRLFPLSLPSEKYCHIGGNLATNAGGTAVLSYGNIRHLCLGIE 172
V+ G+ ++ E N+ L L G YG+ + G+E
Sbjct: 142 VEPGVTYHDLHNYLEANNLRDKLWLDVPDLGGGSVLGNAVERGVGYTPYGDHWMMHSGME 201
Query: 173 AVLPTGDI-------------WNGMHKLIKDNSRYDIRDLL----------IGSEGTLGI 209
VL G++ M +D I L + S+ +GI
Sbjct: 202 VVLANGELLRTGMGALPDPKRPETMGLKPEDQPWSKIAHLFPYGFGPYIDGLFSQSNMGI 261
Query: 210 ITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQ-LSQKTAGSMLTAFELISNFILKLVVK 268
+T + L+P G Q I + Q + + G L I + +L V
Sbjct: 262 VTKIGIWLMPNPGGYQSYLITLPKDGDLKQAVDIIRPLRLGMALQNVPTIRHILLDAAVL 321
Query: 269 HIPNTFSPLSDTSPWYILLEIS------------STETLERAQNIANTILATGFNKKILT 316
++S ++ L +I+ + E + + + F+
Sbjct: 322 GDKRSYSSRTEPLSDEELDKIAKQLNLGRWNFYGALYGPEPIRRVLWETIKDAFSAIPGV 381
Query: 317 EWILPSLDEEKNAIWCLRNNIPLAQKREGRSI-------KHDISVPIGQIP-SFLQEVKK 368
++ P E + + + + H PI ++
Sbjct: 382 KFYFPEDTPENSVLRVRDKTMQGIPTYDELKWIDWLPNGAHLFFSPIAKVSGEDAMMQYA 441
Query: 369 SVSSIFPK--TRIGLFGHIGDGNIHFNVFPPTDENQDEFLSLHWNTINNIVYSVVLSYGG 426
+ +G +H V ++ + + + G
Sbjct: 442 VTKKRCQEAGLDFIGTFTVGMREMHHIVCIVFNKKDLIQKR-KVQWLMRTLIDDCAANGW 500
Query: 427 SIAAEHGIGQLHKKRLEGILEPTEIKIMKKIKEIFDPAGIMNPGK 471
H + ++ + +K DP GI+ PGK
Sbjct: 501 GEYRTHLAFMDQIMETYNWNNSSFLRFNEVLKNAVDPNGIIAPGK 545
>2uuu_A Alkyldihydroxyacetonephosphate synthase; rhizomelic
chondrodysplasia punctata, biosynthesis of
phospholipids, flavoprotein; HET: FAD PL3; 1.95A
{Dictyostelium discoideum} PDB: 2uuv_A*
Length = 584
Score = 239 bits (611), Expect = 7e-64
Identities = 89/502 (17%), Positives = 193/502 (38%), Gaps = 39/502 (7%)
Query: 4 LSLDLIQRFISIVGSEGILDD--QKLISPY---LTEERKIYHGTSP----LVLLPSCTHE 54
+ ++ + + + DD ++ + L + ++ G L++LP E
Sbjct: 90 QYPEFVRELKAFFLPDQLKDDKLARITHTFGKSLRDLIRVRIGQVKNAPDLIVLPHSHEE 149
Query: 55 VSQILKLATETNTSITPQGGNTGLVGGQIPRKN-RKDIILSIKRMNRIRDIDLRSNTIAV 113
V ++++LA + N I P GG + +VG P N R + + ++RMN++ +D R T +
Sbjct: 150 VERLVQLAHKYNVVIIPMGGGSNIVGAIEPVSNERFTVSIDMRRMNKVLWVDRREMTACI 209
Query: 114 DAGINLFNVQKIAEKNHRLFPLSLPSEKYCHIGGNLATNAGGTAVLSYGNIRHLCLGIEA 173
GI ++K K S ++ +GG LAT + G YG+I + +
Sbjct: 210 QVGIMGPELEKQLHKQGVSLGHDPDSFEFSTLGGWLATCSSGHQSDKYGDIEDMAVSFRT 269
Query: 174 VLPTGDIWNGMHKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNS 233
V PTG + + + + + + +++GSEGTLGIIT AV+++ + +
Sbjct: 270 VTPTGTLE--LRNGARSGAGINYKHIILGSEGTLGIITEAVMKVHAVPQAVEYYGFLFPT 327
Query: 234 LEQALQLLQLSQKTAGSMLTAFELISNFILKLVVKHIP-----------------NTFSP 276
A+ LQ + + + T + +L P +
Sbjct: 328 FAHAVSALQQIRS-SEVIPTMIRVYDPEETQLSFAWKPSKGAVSEFTSAMVKKYLHYIRS 386
Query: 277 LSDTSPWYILLEISSTETLERAQNIANTILATGFNKKILTEWILPSLDEEKNAIWCLRNN 336
+ ++ + + + + + L + E++ + +R+
Sbjct: 387 FDFKNVCLSIIGFEGPKKVVDFHRTSVFDILSKNAAFGLGSAPGKTWAEKRYDLPYIRDF 446
Query: 337 IPLAQKREGRSIKHDISVPIGQIPSFLQEVKKSVSSIF-----PKTRIGLFGHIGDGNIH 391
+ + + +V + + ++ K++ F P H +
Sbjct: 447 LLDHNMWVDVA---ETTVSYANLQTLWKDAKQTFVKHFKDQGIPAWICAHISHTYTNGVC 503
Query: 392 FNVFPPTDENQDEFLSLHWNTINNIVYSVVLSYGGSIAAEHGIGQLHKKRLEGILEPTEI 451
+ +N+++ ++ + ++ ++ YGGS++ HG+G H + I
Sbjct: 504 LYFIFASKQNENKDMA-QYIEAKKLMTDIIFKYGGSLSHHHGVGYEHVPWMTRYATRGWI 562
Query: 452 KIMKKIKEIFDPAGIMNPGKFL 473
+ + +KE DP I NP K +
Sbjct: 563 NVYRSLKETIDPKDICNPRKLI 584
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprotein subunit;
electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A
{Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB:
1wve_A* 1dii_A* 1diq_A*
Length = 520
Score = 208 bits (529), Expect = 2e-54
Identities = 63/498 (12%), Positives = 146/498 (29%), Gaps = 40/498 (8%)
Query: 8 LIQRFISIVGSEGILDDQKLISPYLTEERKIYHGTSP--LVLLPSCTHEVSQILKLATET 65
+Q+F +++G + +L + + PY + + + + +V ++K+ E
Sbjct: 20 AVQKFRALLGDDNVLVESDQLVPYNKIMMPVENAAHAPSAAVTATTVEQVQGVVKICNEH 79
Query: 66 NTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDIDLRSNTIAVDAGINLFNVQKI 125
I G R +IL +K+MN+I ID V+ G+ +
Sbjct: 80 KIPIWTISTGRNFGYGSAAPVQRGQVILDLKKMNKIIKIDPEMCYALVEPGVTFGQMYDY 139
Query: 126 AEKNHRLFPLSLPSEKYCHIGGNLATNAGGTAVLSYGNIRHLCLGIEAVLPTGDIWNGMH 185
+ + L + S G T G YG + G+E VL GD++
Sbjct: 140 -IQENNLPVMLSFSAPSAIAGPVGNTMDRGVGYTPYGEHFMMQCGMEVVLANGDVYRTGM 198
Query: 186 KLIKDNSRYDIRD-------LLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQAL 238
+ ++ + I + ++ GI T L+P + + +
Sbjct: 199 GGVPGSNTWQIFKWGYGPTLDGMFTQANYGICTKMGFWLMPKPPVFKPFEVIFEDEADIV 258
Query: 239 QLLQLSQKT--AGSMLTAFELISNFILKLVVKH---------------IPNTFSPLSDTS 281
+++ + + ++ + + S + +
Sbjct: 259 EIVDALRPLRMSNTIPNSVVIASTLWEAGSAHLTRAQYTTEPGHTPDSVIKQMQKDTGMG 318
Query: 282 PWYILLEISST-----ETLERAQNIANTILATGFNKKILTEWILPSLDEEKNAIWCLRNN 336
W + + T + ++ + + P + + N
Sbjct: 319 AWNLYAALYGTQEQVDVNWKIVTDVFKKLGKGRIVTQEEAGDTQP-FKYRAQLMSGVPNL 377
Query: 337 IPLAQKREGRSIKHDISVPIGQIP-SFLQEVKKSVSSIFPKT--RIGLFGHIGDGNIHFN 393
P+ + S ++ + K + ++H
Sbjct: 378 QEFGLYNWRGGGGSMWFAPVSEARGSECKKQAAMAKRVLHKYGLDYVAEFIVAPRDMHHV 437
Query: 394 VFPPTDENQDEFLSLHWNTINNIVYSVVLSYGGSIAAEHGIGQLHKKRLEGILEPTEIKI 453
+ D E + ++ + A + + + R+ P + K+
Sbjct: 438 IDVLYDRTNPE----ETKRADACFNELLDEFEKEGYAVYRVNTRFQDRVAQSYGPVKRKL 493
Query: 454 MKKIKEIFDPAGIMNPGK 471
IK DP I+ PG+
Sbjct: 494 EHAIKRAVDPNNILAPGR 511
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein,
FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4
d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A*
3c0p_A* 3bw7_A* 2qpm_A*
Length = 534
Score = 182 bits (462), Expect = 2e-46
Identities = 57/503 (11%), Positives = 132/503 (26%), Gaps = 57/503 (11%)
Query: 14 SIVGSEGILDDQKLISPYLTEERKIYHGTSPLVLLPSCTHEVSQILKLATETNTS---IT 70
++ + D + T+ I VL PS T ++ +L A T I
Sbjct: 40 ALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIA 99
Query: 71 PQGGNTGLVGGQIPRKNRKDIILSIKRMNRIR-----DIDLRSNTIAVDAGINLFNVQKI 125
+G L+G +++++ + ++ + +V +
Sbjct: 100 FRGRGHSLMGQAFAPGG---VVVNMASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRA 156
Query: 126 AEKNHRLFPLSLPSEKYCHIGGNLATNAGGTAVLSYGNIRHLCLGIEAVLPTGDIWNGMH 185
+ + P S Y +GG L+ +G L ++ + G++
Sbjct: 157 SLA-RGVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVT--- 212
Query: 186 KLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQAL----QLL 241
D+ D ++G G G+IT A + + P + +L
Sbjct: 213 --CSKQLNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRFVYTDFAAFSADQERLT 270
Query: 242 QLSQKTAGSMLTAFELISNFILKLVVKHIPNTFSPLSDTSPWYILLEISSTETLERAQNI 301
G+ + + + + ++ ++ +I
Sbjct: 271 APRPGGGGASFGPMSYVEGSVFVNQSLATDLANTGFFTDADVARIVALAGERNATTVYSI 330
Query: 302 ---------------ANTILATGFNKKILTEWILPSLDEEKNAIWCLRNNIPLAQKREGR 346
+ LA+ E D A + +A + G
Sbjct: 331 EATLNYDNATXXXXXVDQELASVLGTLSYVEGFAFQRDVAYAAFLDRVHGEEVALNKLGL 390
Query: 347 ----SIKHDISVPIGQIPSFLQEVKKSVSSIFPKTRIGL--------------FGHIGDG 388
++ VP +I F + V K + + +
Sbjct: 391 WRVPHPWLNMFVPRSRIADFDRGVFKGILQGTDIVGPLIVYPLNKSMWDDGMSAATPSED 450
Query: 389 NIHFNVFPPTDENQDEFLSLHWNTINNIVYSVVLSYGGSIAAEHGIGQLHKKRLEGILEP 448
+ + ++ N + G +
Sbjct: 451 VFYAVSLLFSSVAPNDLA--RLQEQNRRILRFCDLAGIQYKTYLARHTD-RSDWVRHFGA 507
Query: 449 TEIKIMKKIKEIFDPAGIMNPGK 471
+ ++K +DP +++PG+
Sbjct: 508 AKWNRFVEMKNKYDPKRLLSPGQ 530
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin
oxidase/dehydrogenase, CKX, structural genomics, protein
structure initiative; HET: MSE FAD; 1.70A {Arabidopsis
thaliana} PDB: 2q4w_A*
Length = 524
Score = 162 bits (411), Expect = 1e-40
Identities = 64/504 (12%), Positives = 146/504 (28%), Gaps = 49/504 (9%)
Query: 5 SLDLIQRFISIVGSEGILDDQKLISPYLTEERKIYHGTSPLVLLPSCTHEVSQILKLATE 64
S D + ++I G IL + + V+ P +++ +K A
Sbjct: 26 STDGVSESLNIQGE--ILCGGAAADIAGRDFGGMNCVKPLAVVRPVGPEDIAGAVKAALR 83
Query: 65 TN-TSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIR------DIDLRSNTIAVDAGI 117
++ ++ +G + G + +++ + + + V G
Sbjct: 84 SDKLTVAARGNGHSINGQAMAEGG---LVVDMSTTAENHFEVGYLSGGDATAFVDVSGGA 140
Query: 118 NLFNVQKIAEKNHRLFPLSLPSEKYCHIGGNLATNAGGTAVLSYGNIRHLCLGIEAVLPT 177
+V K + L P S +GG L+ YG ++ V
Sbjct: 141 LWEDVLKRCVSEYGLAPRSWTDYLGLTVGGTLSNAGVSGQAFRYGPQTSNVTELDVVTGN 200
Query: 178 GDIWNGMHKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQA 237
GD+ + ++ ++G G GIIT A + L P + + ++
Sbjct: 201 GDVVT-----CSEIENSELFFSVLGGLGQFGIITRARVLLQPAPDMVRWIRVVYTEFDEF 255
Query: 238 LQLLQLSQKTAGSMLTAFELISNFIL-------------KLVVKHIPNTFSPLSDTSPWY 284
Q + ++F+ + F+ L H +
Sbjct: 256 TQDAEWLVSQKNE--SSFDYVEGFVFVNGADPVNGWPTVPLHPDHEFDPTRLPQSCGSVL 313
Query: 285 ILLEISSTETLERAQNIANTILATGFNK-KILTEWILPSLDEEKNAIWCLRNNIPLAQKR 343
LE+ + + + + + + + + ++ + +A++
Sbjct: 314 YCLELGLHYRDSDSNSTIDKRVERLIGRLRFNEGLRFEVDLPYVDFLLRVKRSEEIAKEN 373
Query: 344 EGRSIKH---DISVPIGQIPSFLQEVKKSVSSIFPKTRIGLFGHIGDGNIHFNVFPPTDE 400
H ++ V I F + V K + + ++ + +E
Sbjct: 374 GTWETPHPWLNLFVSKRDIGDFNRTVFKELVKNGVNGPMLVYPLLRSRWDDRTSVVIPEE 433
Query: 401 NQDEFLSLHWNTINN-----IVYSVVLSYGGSIAAEHGIGQLHKKRLEGILEPTEIK--- 452
+ ++ + V +V + G +K L E
Sbjct: 434 GEIFYIVALLRFVPPCAKVSSVEKMVAQNQEIVHWCVKNGIDYKLYLPHYKSQEEWIRHF 493
Query: 453 -----IMKKIKEIFDPAGIMNPGK 471
K +FDP I++PG+
Sbjct: 494 GNRWSRFVDRKAMFDPMAILSPGQ 517
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme,
twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces
galilaeus}
Length = 521
Score = 145 bits (365), Expect = 2e-35
Identities = 57/475 (12%), Positives = 123/475 (25%), Gaps = 48/475 (10%)
Query: 39 YHGTSPLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRM 98
+ G +V + +V + A I + G G R ++ + +M
Sbjct: 52 FRGRPDVVYVVHTADQVVDAVNQAMAAGQRIAVRSGGHCFEGFVDDPAVR--AVIDMSQM 109
Query: 99 NRIRDIDLRSNTIAVDAGINLFNVQKIAEKNHRLFPLSLPSEKYCHIGGNLATNAGGTAV 158
++ D AV+ G L + + + +GG++ G
Sbjct: 110 RQVF-YDSGKRAFAVEPGATLGETYRALYLDWGVTI-PAGVCPQVGVGGHVLGGGYGPLS 167
Query: 159 LSYGNIRHLCLGIEAVLPTGDI--WNGMHKLIKDNSRYDI-RDLLIGSEGTLGIITGAVL 215
G + +E V+ + D+ ++ GI+T
Sbjct: 168 RRDGVVADHLYAVEVVVVDASGRARKVVATSAADDPNRELWWAHTXXXXXNFGIVTRYWF 227
Query: 216 RLLPYRTGKQVAFIAVNSLEQALQLLQLSQKTAGSMLTAFELISNFILKLVVKHIPNT-- 273
R + ++ +A + +I N T
Sbjct: 228 RTPGATGTDPSQLLPKAPTSTLRHIVTW-DWSALTEEAFTRIIDNHGAWHQSNSAAGTPY 286
Query: 274 -----FSPLSDTSPWYILLEISSTETLERAQNIANTILATGFNKKILTEWILPSLDEEKN 328
L+ + ILL+I L+ A+ + N +A + + S +
Sbjct: 287 ASMHSVFYLNSRAAGQILLDIQIDGGLDGAEALLNDFVAAVNEGTGVEPAVQRSTEPWLR 346
Query: 329 AIWCLRNNIPLAQKREGRSIKHDISVPIGQIPSFLQEVKKSVSSIFPKTRIGLFGHI--- 385
A + + + + + Q + + + + G +
Sbjct: 347 ATLANKFDTGGFDRTKSKGAYLRKPWTAAQAATLYRHLSADSQVWGEVSLYSYGGKVNSV 406
Query: 386 ---------GDGNIHFNVFPPTDENQDEFLSLHW-NTINNIVYSVVLSYGGSIAAEHGI- 434
D I + + + +L W I +++ G
Sbjct: 407 PETATATAQRDSIIKVWMSATWMDPAHDDANLAWIREIYREIFATTGGVPVPDDRTEGTF 466
Query: 435 -----GQLHKKRLEGILEPTEIKI-------MKKIKEIFDPAG-------IMNPG 470
L +R P ++K+K +DP + PG
Sbjct: 467 INYPDVDLVDERWNTSGVPWYTLYYKGNYPRLQKVKARWDPRDVFRHALSVRPPG 521
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex; HET:
FAD GHP 3MY 3FG OMY D3P BMA NAG BDP T55; 2.30A
{Nonomuraea SP} PDB: 2wdw_A*
Length = 523
Score = 137 bits (344), Expect = 6e-33
Identities = 49/469 (10%), Positives = 117/469 (24%), Gaps = 45/469 (9%)
Query: 39 YHGTSPLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRM 98
++G + L T +V+ ++ T + + G + +I+ + +
Sbjct: 54 FNGEPDYIHLVGSTQQVADAVEETVRTGKRVAVRSGGHCFEDFVDNPDVK--VIIDMSLL 111
Query: 99 NRIRDIDLRSNTIAVDAGINLFNVQKIAEKNHRLFPLSLPSEKYCHIGGNLATNAGGTAV 158
I D N ++ G L V + + +GG++ G
Sbjct: 112 TEIA-YDPSMNAFLIEPGNTLSEVYEKLYLGWNVTIPGGVC-GGVGVGGHICGGGYGPLS 169
Query: 159 LSYGNIRHLCLGIEAVLPTGDI--WNGMHKLIKDNSRYDI-RDLLIGSEGTLGIITGAVL 215
+G++ +E V+ + +D+ +D+ G++T +
Sbjct: 170 RQFGSVVDYLYAVEVVVVNKQGKARVIVATRERDDPHHDLWWAHTXXXXXNFGVVTKYWM 229
Query: 216 RLLPYRTGKQVAFIAVNSLEQALQLLQLSQKTAGSMLTAFELISNFILKLVVKHIPNTF- 274
R+ + + + L+ N P++
Sbjct: 230 RVPEDVGRNPERLLPKPPATLLTSTVTFDW-AGMTEAAFSRLLRNHGEWYERNSGPDSPY 288
Query: 275 ----------SPLSDTSPWYILLEISSTETLERAQNIANTILATGFNKKILTEWILPSLD 324
+ + ++ I T A+ + + + + E P
Sbjct: 289 TGLWSQLMIGNEVPGMGESGFMMPIQVDATRPDARRLLDAHIEAVIDGVPPAEVPEPIEQ 348
Query: 325 EEKNAIWCLRNNIPLAQKREGRSIKHDISVPIGQIPSFLQEVKKSVSSIFPKTRIG---- 380
+ P ++ + G K I + + + G
Sbjct: 349 RWLASTPGRGGRGPASKTKAGYLRKRLTDRQIQAVYENMTHMDGIDYGAVWLIGYGGKVN 408
Query: 381 -------LFGHIGDGNIHFNVFPPTDENQDEFLSLHW-NTINNIVYSVVLSYGGSIAAEH 432
D + N +E L W + VY+
Sbjct: 409 TVDPAATALPQ-RDAILKVNYITGWANPGNEAKHLTWVRKLYADVYAETGGVPVPNDVSD 467
Query: 433 GIGQLHKKRLEGILEPTEIKI-------------MKKIKEIFDPAGIMN 468
G + + ++K+K +DP +
Sbjct: 468 GAYINYPDSDLADPGLNTSGVPWHDLYYKGNHPRLRKVKAAYDPRNHFH 516
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen
channel, FAD, flavoprotein, oxidoreductase; HET: FAD
SUC; 1.54A {Chromobacterium SP}
Length = 540
Score = 118 bits (296), Expect = 2e-27
Identities = 37/219 (16%), Positives = 70/219 (31%), Gaps = 18/219 (8%)
Query: 39 YHGTSPLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIP--RKNRKDIILSIK 96
P EV ++ A + + +G + ++L
Sbjct: 26 IKVDDVWTCAPRSADEVVKVANWAKDNGYKVRARGMMHNWSPLTLAAGVSCPAVVLLDTT 85
Query: 97 RMNRIRDIDL--RSNTIAVDAGINLFNVQKIAEKNHRLFPLSLPSEKYCHIGGNLATNAG 154
R ID + AGI + + EK + P+ +GG LA N
Sbjct: 86 RYLTAMSIDASGPVAKVTAQAGITMEALLTGLEKAGLGVT-AAPAPGDLTLGGVLAINGH 144
Query: 155 GTAVLS----------YGNIRHLCLGIEAVLPTGDIWNGMHKLIKDNSRYDIRDLLIGSE 204
GTA+ + YG+I +L L + AV+ ++ +R D + + +
Sbjct: 145 GTAIPAKGERRLAGASYGSISNLVLSLTAVVYDKAS---GAYALRKFARNDPQIAPLLAH 201
Query: 205 GTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQL 243
+I A L+ P + + ++ + E
Sbjct: 202 VGRSLIVEATLQAAPNQRLRCQSWFNIPYGEMFAAAGSG 240
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET:
FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3
d.145.1.1 PDB: 1i19_A*
Length = 561
Score = 115 bits (288), Expect = 2e-26
Identities = 60/440 (13%), Positives = 122/440 (27%), Gaps = 57/440 (12%)
Query: 14 SIVGSEGILDDQKLISPYLTEERKIYHGTSPLVLLPSCTHEVSQILKLATETNTSITPQG 73
+ +D L K + V P +V ++ A E + I P+G
Sbjct: 7 PLPTPPNFPNDIALFQQAYQNWSKEIMLDATWVCSPKTPQDVVRLANWAHEHDYKIRPRG 66
Query: 74 GNTGLVGGQIPRKNRKDIILSIKRMNRIR----DIDLRSNTIAVDAGINLFNVQKIAEKN 129
G + + + ++ M + + T+ AG ++ + +K+
Sbjct: 67 AMAGWTPLTVEKGANVEKVILADTMTHLNGITVNTGGPVATVTAGAGASIEAIVTELQKH 126
Query: 130 HRLFPLSLPSEKYCHIGGNLATNAGGTAVLS----------YGNIRHLCLGIEAVLPTGD 179
+ +LP+ IGG LA NA G A+ + YG++ +L + AV+ G
Sbjct: 127 DLGWA-NLPAPGVLSIGGALAVNAHGAALPAVGQTTLPGHTYGSLSNLVTELTAVVWNGT 185
Query: 180 IWNGMHKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNS--LEQA 237
+ ++ R D R + + +T ++ P + ++ + L
Sbjct: 186 TYA-----LETYQRNDPRITPLLTNLGRCFLTSVTMQAGPNFRQRCQSYTDIPWRELFAP 240
Query: 238 LQLLQLSQKTAGSMLTAFELISNFILKLVVKHIPNTFSPLSDTSPWYILLEISSTETLER 297
+ + + E I + + D+S L + + +
Sbjct: 241 KGADGRTFEKFVAESGGAEAIWYPFTEKPWMKVWTVSPTKPDSSNEVGSLGSAGSLVGKP 300
Query: 298 AQNIANTILATGFNKKILTEWIL--------------PSLDEEKNAIWCLRNNIPLAQKR 343
Q + L E I P I L A
Sbjct: 301 PQAREVSGPYNYIFSDNLPEPITDMIGAINAGNPGIAPLFGPAMYEITKLGLAATNANDI 360
Query: 344 EGRSIKH----------------DISVPIGQIPSFLQEVKKSVSSIFPKTRIGLFGHIGD 387
G S + I + + + + RI + G+
Sbjct: 361 WGWSKDVQFYIKATTLRLTEGGGAVVTSRANIATVINDFTEWF-----HERIEFYRAKGE 415
Query: 388 GNIHFNVFPPTDENQDEFLS 407
++ V
Sbjct: 416 FPLNGPVEIRCCGLDQAADV 435
Score = 35.2 bits (79), Expect = 0.030
Identities = 34/329 (10%), Positives = 74/329 (22%), Gaps = 41/329 (12%)
Query: 172 EAVLPTGDIWNGMHKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAV 231
E P G K + ++ + +E + A
Sbjct: 236 ELFAPKGADGRTFEKFVAESGGAEA-IWYPFTEKPWMKVWTVSPTKPDSSNEVGSLGSAG 294
Query: 232 NSLEQALQLLQLSQKTAGSMLTAFELISNFILKLV---VKHIPNTFSPLSDTSPWYILLE 288
+ + + Q ++S + + I ++ P L
Sbjct: 295 SLVGKPPQAREVSGP---YNYIFSDNLPEPITDMIGAINAGNPGIAPLFGPAMYEITKLG 351
Query: 289 I---SSTETLERAQNIANTILATGFNKKILTEWILPSLDEEKNAIWCLRNNIPLAQKREG 345
+ ++ + ++++ I AT ++ S I +
Sbjct: 352 LAATNANDIWGWSKDVQFYIKATTLRLTEGGGAVVTSRANIATVINDFTEWFHERIEFYR 411
Query: 346 RSIKHDISVPI-----GQIPSFLQEVKKSVSSIFPKTRIGLFGHIGDGNIHFNV-FPPTD 399
+ ++ P+ G + +V TR D I NV P
Sbjct: 412 AKGEFPLNGPVEIRCCGLDQAADVKVPSVGPPTISATRPRPDHPDWDVAIWLNVLGVPGT 471
Query: 400 ENQDEFL------------------SLHWNTINNIVYSVVLSYGGSIAAEHGIGQLHKKR 441
EF W+ + ++
Sbjct: 472 PGMFEFYREMEQWMRSHYNNDDATFRPEWSKGWA------FGPDPYTDNDIVTNKMRATY 525
Query: 442 LEGILEPTEIKIMKKIKEIFDPAGI-MNP 469
+EG+ + DP + N
Sbjct: 526 IEGVPTTENWDTARARYNQIDPHRVFTNG 554
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin,
flavoprotein, oxidoreductase; HET: FAD; 1.1A
{Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A*
2vfv_A*
Length = 422
Score = 113 bits (284), Expect = 7e-26
Identities = 59/458 (12%), Positives = 127/458 (27%), Gaps = 60/458 (13%)
Query: 28 ISPYLTEE-----RKIYHGTSPLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQ 82
IS ++++ T+ +L P + ++ + + G
Sbjct: 1 ISEFMSDITVTNWAGNITYTAKELLRPHSLDALRALVADSAR----VRVLGSGHSFNEIA 56
Query: 83 IPRKNRKDIILSIKRMNRIRDIDLRSNTIAVDAGINLFNVQKIAEKNHRLFPLSLPSEKY 142
P ++LS+ + + D+D + T+ V G+ + ++ P +
Sbjct: 57 EPGDG--GVLLSLAGLPSVVDVDTAARTVRVGGGVRYAELARVVHARGLALPNMASLP-H 113
Query: 143 CHIGGNLATNAGGTAVLSYGNIRHLCLGIEAVLPTGDIWNGMHKLIKDNSRYDIRDLLIG 202
+ G++AT G+ V G++ + +E V G + +
Sbjct: 114 ISVAGSVATGTHGSGV-GNGSLASVVREVELVTADGSTV-------VIARGDERFGGAVT 165
Query: 203 SEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQALQLLQLSQKTAGSMLTAFELISNFI 262
S G LG++T L L P +Q F + + A S+ + +
Sbjct: 166 SLGALGVVTSLTLDLEPAYEMEQHVFTELPLAGLDPATFETVMAAAYSVSLFTDWRAPGF 225
Query: 263 LKLVVKHIPNTFSPLSDTSPWYILLEISSTETLERAQNIANTILATGFNKKILTEWILPS 322
++ +K T PL E A N G + L +
Sbjct: 226 RQVWLKR--RTDRPLDGFPYAAPAAEKMHPVPGMPAVNCTEQFGVPGPWHERLPHF---- 279
Query: 323 LDEEKNAIWCLRNNIPLAQKREGRSIKHDISVPIGQIPSFLQEVKKSVSSIFPKTRIGLF 382
G ++ + +P + L + ++ P +
Sbjct: 280 --------------RAEFTPSSGAELQSEYLMPREHALAALHAMDAIRETLAPVLQTCEI 325
Query: 383 GHIGDGNIHFNVFPPTDENQDEFLSLHWN-------TINNIVYSVVLSYGGSIAAEHGIG 435
+ + D W + + ++ + H G
Sbjct: 326 RTVAADAQWLSPAYGRD---TVAAHFTWVEDTAAVLPVVRRLEEALVPFAARP---HW-G 378
Query: 436 QLH---KKRLEGILEPTEIKIMKKIKEIFDPAGIM-NP 469
++ L + + + DPAG N
Sbjct: 379 KVFTVPAGELRALYP--RLADFGALAGALDPAGKFTNA 414
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation,
alakloid biosynthesis, oxidoreductase, alkaloid
metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia
californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A*
3fw8_A* 3fw7_A* 3fwa_A*
Length = 495
Score = 108 bits (271), Expect = 2e-24
Identities = 39/214 (18%), Positives = 76/214 (35%), Gaps = 8/214 (3%)
Query: 45 LVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDI 104
++LP E+S ++ + + +I + G G + I++ + +NR+ I
Sbjct: 48 AIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTS-DTPFILIDLMNLNRV-SI 105
Query: 105 DLRSNTIAVDAGINLFNVQKIAEKNHRLFPLSLPSEKYCHIGGNLATNAGGTAVLSYGNI 164
DL S T V++G L + ++ + GG+++ G YG
Sbjct: 106 DLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLA 165
Query: 165 RHLCLGIEAVLPTGDIWNGMHKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGK 224
+ + G I + + + G I ++LLP
Sbjct: 166 ADNVVDAILIDANGAILD-----RQAMGEDVFWAIRXXXXXVWGAIYAWKIKLLPVPEKV 220
Query: 225 QVAFIAVN-SLEQALQLLQLSQKTAGSMLTAFEL 257
V + N ++++A LL Q A + F L
Sbjct: 221 TVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTL 254
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric
substrates, flavoenzymes, nicotine degradation; HET:
FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A*
2bvh_A*
Length = 459
Score = 107 bits (267), Expect = 6e-24
Identities = 58/445 (13%), Positives = 132/445 (29%), Gaps = 21/445 (4%)
Query: 29 SPYLTEERKIYHGTSP----LVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIP 84
I+ G L+ +V++ ++ A + I+ + G G
Sbjct: 21 DSGFDAIANIWDGRHLQRPSLIARCLSAGDVAKSVRYACDNGLEISVRSGGHNPNGYATN 80
Query: 85 RKNRKDIILSIKRMNRIRDIDLRSNTIAVDAGINLFNVQKIAEKNHRLFPLSLPSEKYCH 144
I+L ++ MN I ID + G + + + E
Sbjct: 81 ---DGGIVLDLRLMNSIH-IDTAGSR--ARIGGGVISGDLVKEAAKFGLAAVTGMHPKVG 134
Query: 145 IGGNLATNAGGTAVLSYGNIRHLCLGIEAVLPTGDIWNGMHKLIKDNSRYDIRDLLIGSE 204
G G YG LG V TGD+ D+ R ++ + G+
Sbjct: 135 FCGLALNGGVGFLTPKYGLASDNILGATLVTATGDVIY-----CSDDERPELFWAVRGAG 189
Query: 205 GTLGIITGAVLRLLPYRTGKQVAFIAVN-SLEQALQLLQLSQKTAGSMLTAFELISNFIL 263
G++T ++L FI S+ + LL M A + + +
Sbjct: 190 PNFGVVTEVEVQLYELPRKMLAGFITWAPSVSELAGLLTSLLDALNEM--ADHIYPSVFV 247
Query: 264 KLVVKHIPNTFSPLSDTSPWYILLEISSTETLERAQNIANTILATGFNKKILTEWILPSL 323
+ P+ + I + + ++++I +++ + + S
Sbjct: 248 GVDENRAPSVTVCVGHLGGLDIAERDIA-RLRGLGRTVSDSIAVRSYDEVVALNAEVGSF 306
Query: 324 DEEKNAIWCLRNNIPLAQKREGRSIKHDISVPIGQIPSFLQEVKKSVSSIFPKTRIGLFG 383
++ + +W R I + R +I ++ + + S + F +
Sbjct: 307 EDGMSNLWIDR-EIAMPNARFAEAIAGNLDKFVSEPASGGSVKLEIEGMPFGNPKRTPAR 365
Query: 384 HIGDGNIHFNVFPPTDENQDEFLSLHWNTINNIVYSVVLSYGGSIAAEHGIGQLHKKRLE 443
H + E ++ + ++ G + ++ + +
Sbjct: 366 HRDAMGVLALAEWSGAAPGSEKYPELARELDAALLRAGVTTSGF-GLLNNNSEVTAEMVA 424
Query: 444 GILEPTEIKIMKKIKEIFDPAGIMN 468
+ +P + +K +DP
Sbjct: 425 EVYKPEVYSRLAAVKREYDPENRFR 449
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme,
oxidoreductase; HET: NAG FAD; 1.55A {Acremonium
strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A*
Length = 503
Score = 94.3 bits (233), Expect = 6e-20
Identities = 27/216 (12%), Positives = 69/216 (31%), Gaps = 14/216 (6%)
Query: 8 LIQRFISIVGSEGILDDQKLISPYLTEERKIYHGTSPL----VLLPSCTHEVSQILKLAT 63
+ + + + ++ + + ++ + +P T +++ ++
Sbjct: 5 EFNSINACLAAADVEFHEEDSEGW-DMDGTAFNLRVDYDPAAIAIPRSTEDIAAAVQCGL 63
Query: 64 ETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDIDLRSNTIAVDAGINLFNVQ 123
+ I+ +GG ++ ++L + RM R+ D N +A G
Sbjct: 64 DAGVQISAKGGGHSYGSYGFGGED-GHLMLELDRMYRVSVDD---NNVATIQGGARLGYT 119
Query: 124 KIAEKNHRLFPLSLPSEKYCHIGGNLATNAGGTAVLSYGNIRHLCLGIEAVLPTGDIWNG 183
+ + LS + +GG++ G A ++G +G VL I +
Sbjct: 120 ALELLDQGNRALSHGTCPAVGVGGHVLGGGYGFATHTHGLTLDWLIGATVVLADASIVH- 178
Query: 184 MHKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLP 219
+ + D+ L I++
Sbjct: 179 ----VSETENADLFWALRXXXXXFAIVSEFEFNTFE 210
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus
thermophilus HB8}
Length = 219
Score = 87.9 bits (217), Expect = 4e-18
Identities = 30/141 (21%), Positives = 46/141 (32%), Gaps = 5/141 (3%)
Query: 103 DIDLRSNTIAVDAGINLFNVQKIAEKNHRLFPLSLPSEKYCHIGGNLATNAGGTAVLSYG 162
++ + +L V LFP P E +GG +A
Sbjct: 2 EVHAADQYLVAPGEADLLEVHARLAG-TGLFPPFPPVELPGGVGGLVARGGFAQ----TF 56
Query: 163 NIRHLCLGIEAVLPTGDIWNGMHKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRT 222
LG+ P G ++K+ YD+ L +GS G LG VLRL P R
Sbjct: 57 FFPAEVLGLTFRTPKGRRVRAGGVVVKNVQGYDLVRLFVGSFGLLGRAEEVVLRLRPGRA 116
Query: 223 GKQVAFIAVNSLEQALQLLQL 243
+ S + + +
Sbjct: 117 QAFLRRPFSGSFPRLVPTPRF 137
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 64.2 bits (156), Expect = 7e-11
Identities = 90/536 (16%), Positives = 161/536 (30%), Gaps = 230/536 (42%)
Query: 11 RFISIVGSEGILDDQKLISPYLTEERKIYHGTSPLV--LLPSCTHEVSQIL-KLATETNT 67
+ ++I G +G DD Y E R +Y LV L+ ++ L +L T
Sbjct: 155 QLVAIFGGQGNTDD------YFEELRDLYQTYHVLVGDLI----KFSAETLSELIRTTLD 204
Query: 68 SIT--PQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDID-LRSNTIAVDAGINLFNVQK 124
+ Q GL +I+ ++ + D D L S
Sbjct: 205 AEKVFTQ----GL-----------NILEWLENPSNTPDKDYLLS---I------------ 234
Query: 125 IAEKNHRLFPLSLPSEKYCHIG-GNLATNAGGTAVLSYGNIRHLCLGIEAVLPTGDIWNG 183
P+S P IG LA H + T + G
Sbjct: 235 ---------PISCPL-----IGVIQLA---------------HYVV-------TAKLL-G 257
Query: 184 MHKLIKDNSRYDIRDLLIGSEG-TLGIITGAV-----------------LRLLPYRTGK- 224
++R L G+ G + G++T + +L + G
Sbjct: 258 FTPG-------ELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL-FFIGVR 309
Query: 225 -QVAFIAVNSLEQALQLLQLSQK----TAGSMLTAFELISNFILKLVVKHIPNTFSPLSD 279
A+ SL + +L+ S + ML+ ISN + V ++ T S L
Sbjct: 310 CYEAY-PNTSLPPS--ILEDSLENNEGVPSPMLS----ISNLTQEQVQDYVNKTNSHLPA 362
Query: 280 TSPWYILLEISSTETLERAQNIANTILA------TGFNKKILTEWILPSLDEEKNAIWCL 333
I L ++ A+N+ +++ G N +L + K
Sbjct: 363 GKQVEISL-VNG------AKNL---VVSGPPQSLYGLNL---------TLRKAKAPSGLD 403
Query: 334 RNNIPLAQKR---EGR------------------SIKHDI---SVPIG----QIPSF--- 362
++ IP ++++ R I D+ +V QIP +
Sbjct: 404 QSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTF 463
Query: 363 ----LQEVKKSVSSIFPKTRIGLFGHIGDGNIHFN---VFPPTDENQDEFLSLHWNTINN 415
L+ + SI + + I + + F T H
Sbjct: 464 DGSDLRVLS---GSISER----IVDCIIRLPVKWETTTQFKAT----------H------ 500
Query: 416 IVYSVVLSYG-GSIAAEHGIGQLHKKRLEGILEPTEIKIMKKIKEIFDPAGIMNPG 470
+L +G G + G+G L + +G T +++ I AG ++
Sbjct: 501 -----ILDFGPGGAS---GLGVLTHRNKDG----TGVRV------IV--AGTLDIN 536
Score = 43.8 bits (103), Expect = 8e-05
Identities = 43/277 (15%), Positives = 85/277 (30%), Gaps = 94/277 (33%)
Query: 158 VLSYGNIRHLCLGIEAVLPTGDIWNGMHKLIKDNSRYDIRDLLIGSEG-TLGIITGAVLR 216
LS+G++ H+ L +PT + +++ + L +EG
Sbjct: 10 TLSHGSLEHVLL-----VPTASFFI--ASQLQEQF---NKILPEPTEGFAADDEPTTPAE 59
Query: 217 LLPYRTGKQVAFIAVNSLEQALQLLQLSQKTAGSMLTAFELISNFILKLVVKHIPNTFSP 276
L+ GK + +++ + G +L L + N +
Sbjct: 60 LV----GKFLGYVSS----------LVEPSKVGQFDQ--------VLNLCLTEFENCY-- 95
Query: 277 LSDTSPWYILLEISSTETLERAQNIANTILATGFNKKILTEWILPSLDEEKNAIWCLRNN 336
L +I + + A L + +L + K I +N
Sbjct: 96 LEGN-------------------DI-HALAAK------LLQENDTTLVKTKELI---KNY 126
Query: 337 IPLAQKREGRSIKHDISVPIGQIPSFL-QEVKKSVSSIFPKTRIGLFGHIGDGNIHFNVF 395
I A+ R + S L + V + + + +FG G GN + F
Sbjct: 127 I-TARIMAKRPFDK-------KSNSALFRAVGEGNAQLV-----AIFG--GQGNTD-DYF 170
Query: 396 PPTDENQDEFLSLHWNTINNIVYSVVLSYGGSIAAEH 432
+E L+ T + +V ++ +AE
Sbjct: 171 -------EELRDLY-QTYHVLVGDLI-----KFSAET 194
Score = 37.2 bits (86), Expect = 0.008
Identities = 63/268 (23%), Positives = 103/268 (38%), Gaps = 71/268 (26%)
Query: 179 DIWNGMHKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVNSLEQAL 238
D+WN KD + I D++I + L I G GK++
Sbjct: 1644 DVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGG-------EKGKRI------------ 1684
Query: 239 QLLQLSQKTAGSMLTAFELI------SNFILKLVVKHIPN-TF-------SPLSDTSPWY 284
++ +M+ FE I + I K + +H + TF S T P
Sbjct: 1685 ------RENYSAMI--FETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPAL 1736
Query: 285 ILLEISSTETLERAQNIANTILATGFNKKILTEW-ILPSLDE----EK--NAIWCLRNNI 337
L+E ++ E L+ I AT F L E+ L SL + E ++ +
Sbjct: 1737 TLMEKAAFEDLKSKGLIPAD--AT-FAGHSLGEYAALASLADVMSIESLVEVVFYRGMTM 1793
Query: 338 PLAQKRE--GRSIKHDISVPIGQI-PSFLQEVKKSVSSIFPKTRIGLFGHIGDGNIHFNV 394
+A R+ GRS I++ G++ SF QE + V K R G I +++NV
Sbjct: 1794 QVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGK-RTGWLVEI----VNYNV 1848
Query: 395 FPPTDENQD-----EFLSLHWNTINNIV 417
ENQ + +L +T+ N++
Sbjct: 1849 -----ENQQYVAAGDLRAL--DTVTNVL 1869
Score = 34.9 bits (80), Expect = 0.036
Identities = 40/251 (15%), Positives = 78/251 (31%), Gaps = 100/251 (39%)
Query: 4 LSLDLIQRFISIVGSEGILDDQKLISPYLTEERKIY----HGTSPLVL--LPSCTHEVSQ 57
L+ + +Q +++ S +L +++ +G LV+ P + ++
Sbjct: 344 LTQEQVQDYVNKTNS------------HLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNL 391
Query: 58 IL---KLATETNTSITPQGGNTGLVGGQIPRKNRKDII----LSI----------KRMNR 100
L K + + S +IP RK L + +
Sbjct: 392 TLRKAKAPSGLDQS-------------RIPFSERKLKFSNRFLPVASPFHSHLLVPASDL 438
Query: 101 IRDIDLRSNTIAVDA---GINLF------NVQKIAEK-NHRLFPL--SLPS--EKYCHIG 146
I DL N ++ +A I ++ +++ ++ + R+ LP E
Sbjct: 439 INK-DLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWET----- 492
Query: 147 GNLATNAGGTAVLSYGNIRHLCLGIEAVLPTGDIWNGMHKLIKDNSRYDIRDLLIGSEGT 206
T T +L +G P G +G+ L N +GT
Sbjct: 493 ---TTQFKATHILDFG-------------PGGA--SGLGVLTHRN-----------KDGT 523
Query: 207 LG--IITGAVL 215
G +I L
Sbjct: 524 -GVRVIVAGTL 533
Score = 33.8 bits (77), Expect = 0.096
Identities = 54/357 (15%), Positives = 92/357 (25%), Gaps = 174/357 (48%)
Query: 173 AVLPTGDIWNGMHKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRTGKQVAFIAVN 232
L DI H L LL ++ TL L+ + A
Sbjct: 94 CYLEGNDI----HALA--------AKLLQENDTTLV----KTKELI--KN----YITARI 131
Query: 233 SLEQALQ------LLQLSQKTAGSMLTAF-----------ELISNFILKLVVKHIPNTFS 275
++ L + + ++ F EL + + T+
Sbjct: 132 MAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEEL----------RDLYQTYH 181
Query: 276 PLSDTSPWYILLEISSTETLER-AQNI--ANTILATGFNKKILTEWI-----LPSLDEEK 327
L L++ S ETL + A + G N + EW+ P D
Sbjct: 182 VLVGD-----LIK-FSAETLSELIRTTLDAEKVFTQGLN---ILEWLENPSNTPDKDY-- 230
Query: 328 NAIWCLRNNIPLAQKREGRSIKHDISVP-IG--QI-------------P----------- 360
L SI IS P IG Q+ P
Sbjct: 231 -----------LL------SIP--ISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGAT 271
Query: 361 -------------------SFLQEVKKSVSSIFPKTRIGLFGHIGDGNIHFNVFPPTDEN 401
SF V+K+++ +F IG+ + +P T
Sbjct: 272 GHSQGLVTAVAIAETDSWESFFVSVRKAITVLF---FIGVRCY--------EAYPNT--- 317
Query: 402 QDEFLSLHWNTINNIVYSVVLSYGGSIAAEHGIGQ---------LHKKRLEGILEPT 449
L S++ + E+ G L +++++ + T
Sbjct: 318 ---SLPP----------SIL-----EDSLENNEGVPSPMLSISNLTQEQVQDYVNKT 356
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 38.8 bits (89), Expect = 0.002
Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 33/62 (53%)
Query: 235 EQALQLLQLSQKTAGSMLTAFELISNFILKLVVKHIPNTFSPLSDTSPWYILLEISSTET 294
+QAL+ LQ S LKL ++ D++P L I + T
Sbjct: 19 KQALKKLQAS------------------LKL--------YA--DDSAP---ALAIKA--T 45
Query: 295 LE 296
+E
Sbjct: 46 ME 47
>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural
genomics, PSI, protein structure initiative; 2.30A
{Streptococcus agalactiae}
Length = 224
Score = 30.0 bits (67), Expect = 1.0
Identities = 15/91 (16%), Positives = 31/91 (34%), Gaps = 14/91 (15%)
Query: 38 IYHGTSPLVLLPSCTHEVSQILKLATETNTSITPQGGNTGLVGGQIPRKNRKDIILSIKR 97
++H ++ + Q++ L G L+ G + + I IK
Sbjct: 122 VFHMAFDVIPKSDQKKSIDQLVAL-----------GFTRILLHGSSNGEPIIENIKHIKA 170
Query: 98 MNRIRDIDLRSNTIAVDAGINLFNVQKIAEK 128
+ + + I V G+ N Q I ++
Sbjct: 171 LVEYANNRIE---IMVGGGVTAENYQYICQE 198
>1w36_C RECC, exodeoxyribonuclease V gamma chain; recombination, helicase,
hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli}
SCOP: c.37.1.19 c.37.1.19 c.52.1.25 PDB: 3k70_C*
Length = 1122
Score = 29.4 bits (65), Expect = 1.7
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 229 IAVNS--LEQALQLLQLSQKTAGSMLTAFELISNFILKLVVKHIPNTFSPLSDTSPW 283
I V S + Q LQ+ LSQK + F L ++FI + V+ +P + S +
Sbjct: 35 ILVQSTGMAQWLQM-TLSQKFGIAANIDFPLPASFIWDMFVRVLPE----IPKESAF 86
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit
alpha isoform; PI3KCA, PI3K, PIK3R1,
phosphatidilynositol 3,4,5- triphosphate, wortmannin,
H1047R, ATP-binding, disease mutation, kinase; HET: KWT;
2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 2enq_A
Length = 1091
Score = 28.4 bits (63), Expect = 3.5
Identities = 32/174 (18%), Positives = 61/174 (35%), Gaps = 19/174 (10%)
Query: 217 LLPYRTGKQVAFIAVNSLEQALQ-------LLQLSQKTAGSMLTAFELISNFILKLVVKH 269
L V AV LE+ L L+QL Q L+ F+LK + +
Sbjct: 625 LDCNYPDPMVRGFAVRCLEKYLTDDKLSQYLIQLVQVLKYEQYLDNLLVR-FLLKKALTN 683
Query: 270 IPNTFSPLSDTSPWYILLEISSTETLERAQNIANTIL-ATGFNKKILTEWILPSLDEEKN 328
+ W++ E+ + +R + + A G K L E
Sbjct: 684 Q-----RIGHFFFWHLKSEMHNKTVSQRFGLLLESYCRACGMYLKHLNR-----QVEAME 733
Query: 329 AIWCLRNNIPLAQKREGRSIKHDISVPIGQIPSFLQEVKKSVSSIFPKTRIGLF 382
+ L + + +K E + ++ V + P F+ ++ +S + P ++G
Sbjct: 734 KLINLTDILKQEKKDETQKVQMKFLVEQMRRPDFMDALQGFLSPLNPAHQLGNL 787
>2vqx_A Metalloproteinase; thermolysin-like structure, zinc, protease,
hydrolase, metalloprotease; 1.82A {Serratia
proteamaculans}
Length = 341
Score = 28.4 bits (63), Expect = 3.8
Identities = 11/46 (23%), Positives = 15/46 (32%)
Query: 177 TGDIWNGMHKLIKDNSRYDIRDLLIGSEGTLGIITGAVLRLLPYRT 222
D++ + K D D LIG I G LR +
Sbjct: 188 LSDVFGSLVKQFHLKQTADKADWLIGEGLLAKGINGKGLRSMSAPG 233
>3li9_A Hypothetical sensory transduction histidine kinas; PDC fold,
signaling protein; HET: BTB; 1.70A {Methanosarcina
mazei} PDB: 3li8_A* 3lia_A*
Length = 291
Score = 27.4 bits (60), Expect = 7.3
Identities = 5/34 (14%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 273 TFSPLSDTSPWYILLEISSTETLERAQNIANTIL 306
+ P+ + +L + E L +++ + +L
Sbjct: 252 FYEPVKTG-DFSFVLVVPKEEMLAGVKDLRDRLL 284
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase,
isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Length = 230
Score = 27.4 bits (60), Expect = 7.4
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 80 GGQIPRKNRKDIILSIKRMNRIRDIDLRSNTIAVDAGINLFNVQKIAE 127
GGQ I ++++M R +D I VD G+ N ++ E
Sbjct: 148 GGQSFIPEVLPKIRALRQMCDERGLDPW---IEVDGGLKPNNTWQVLE 192
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, structural
genomics, center for structural genomics of infectious
diseases; 2.05A {Francisella tularensis subsp}
Length = 246
Score = 27.4 bits (60), Expect = 7.9
Identities = 9/44 (20%), Positives = 21/44 (47%)
Query: 84 PRKNRKDIILSIKRMNRIRDIDLRSNTIAVDAGINLFNVQKIAE 127
+K ++ K +++ R + +D G+N +N+ +IA
Sbjct: 171 GQKFIPAMLDKAKEISKWISSTDRDILLEIDGGVNPYNIAEIAV 214
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi}
SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A
Length = 361
Score = 27.1 bits (59), Expect = 9.6
Identities = 14/121 (11%), Positives = 32/121 (26%)
Query: 66 NTSITPQGGNTGLVGGQIPRKNRKDIILSIKRMNRIRDIDLRSNTIAVDAGINLFNVQKI 125
NT++ G + + G + I R I+ G N
Sbjct: 88 NTTVIGLGTDAKFINGSLIIDGTDGTNNVIIRNVYIQTPIDVEPHYEKGDGWNAEWDAMN 147
Query: 126 AEKNHRLFPLSLPSEKYCHIGGNLATNAGGTAVLSYGNIRHLCLGIEAVLPTGDIWNGMH 185
+ + + ++ T G + + + G + V + + +
Sbjct: 148 ITNGAHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDGALDIKRGSDYVTISNSLIDQHD 207
Query: 186 K 186
K
Sbjct: 208 K 208
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.319 0.138 0.401
Gapped
Lambda K H
0.267 0.0495 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 4,024,712
Number of extensions: 187683
Number of successful extensions: 599
Number of sequences better than 10.0: 1
Number of HSP's gapped: 554
Number of HSP's successfully gapped: 38
Length of query: 473
Length of database: 5,693,230
Length adjustment: 96
Effective length of query: 377
Effective length of database: 3,365,806
Effective search space: 1268908862
Effective search space used: 1268908862
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.7 bits)