HHsearch alignment for GI: 254780762 and conserved domain: COG0550
>COG0550 TopA Topoisomerase IA [DNA replication, recombination, and repair].
Probab=96.46 E-value=0.024 Score=37.25 Aligned_cols=90 Identities=22% Similarity=0.324 Sum_probs=57.4
Q ss_pred EEEEEECHHHHHHHHHHCCEEEEEEEHH--HHCCCCCC-------CCHH-------HCC----HHHHHHHHCC--CCCCE
Q ss_conf 6999835889999975174013421012--10020002-------6811-------128----8999998515--78554
Q gi|254780762|r 84 VIIVVEDVADLWALERSKAVNALYHVLG--GSLSPLDR-------IGPE-------DIG----IQSLIERIEV--KKIRE 141 (201)
Q Consensus 84 ~lCVVE~~~Di~~IE~t~~y~G~YhVLg--G~ispl~g-------~~p~-------~l~----i~~L~~ri~~--~~i~E 141 (201)
T Consensus 2 ~LiIvEsPskAk~Ia~~Lg--~~~~V~as~GHi~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~v~~lk~~ak~ad~ 79 (570)
T COG0550 2 RLIIVESPSKAKTIAKYLG--KGYVVTASVGHLRDLPFPEEYKGWVDVDLPIFEPKYIIKPGKKKKVVKKLKKLAKKADE 79 (570)
T ss_pred EEEEEECHHHHHHHHHHCC--CCCEEEECCCCCCCCCCCHHCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHCCCCE
T ss_conf 5999927789999998729--99499975663213787021147757766556620021522457999999997554998
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCC-CEEEEEEC
Q ss_conf 99994699786899999999820179-80887414
Q gi|254780762|r 142 LIFAISATIEGQTTAHYIMDKLKGID-VKITRLAY 175 (201)
Q Consensus 142 VIlA~~~t~EGe~Ta~yi~~~lk~~~-ikitrla~ 175 (201)
T Consensus 80 v~lAtD~DREGE~I~~~i~~~l~~~~~~~~~R~~F 114 (570)
T COG0550 80 VYLATDPDREGEAIGWHILEVLKLKNPSKVKRVVF 114 (570)
T ss_pred EEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 99898999530799999999847567774137998