HHsearch alignment for GI: 254780762 and conserved domain: COG0550

>COG0550 TopA Topoisomerase IA [DNA replication, recombination, and repair].
Probab=96.46  E-value=0.024  Score=37.25  Aligned_cols=90  Identities=22%  Similarity=0.324  Sum_probs=57.4

Q ss_pred             EEEEEECHHHHHHHHHHCCEEEEEEEHH--HHCCCCCC-------CCHH-------HCC----HHHHHHHHCC--CCCCE
Q ss_conf             6999835889999975174013421012--10020002-------6811-------128----8999998515--78554
Q gi|254780762|r   84 VIIVVEDVADLWALERSKAVNALYHVLG--GSLSPLDR-------IGPE-------DIG----IQSLIERIEV--KKIRE  141 (201)
Q Consensus        84 ~lCVVE~~~Di~~IE~t~~y~G~YhVLg--G~ispl~g-------~~p~-------~l~----i~~L~~ri~~--~~i~E  141 (201)
T Consensus         2 ~LiIvEsPskAk~Ia~~Lg--~~~~V~as~GHi~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~v~~lk~~ak~ad~   79 (570)
T COG0550           2 RLIIVESPSKAKTIAKYLG--KGYVVTASVGHLRDLPFPEEYKGWVDVDLPIFEPKYIIKPGKKKKVVKKLKKLAKKADE   79 (570)
T ss_pred             EEEEEECHHHHHHHHHHCC--CCCEEEECCCCCCCCCCCHHCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHCCCCE
T ss_conf             5999927789999998729--99499975663213787021147757766556620021522457999999997554998


Q ss_pred             EEEEECCCCCHHHHHHHHHHHHCCCC-CEEEEEEC
Q ss_conf             99994699786899999999820179-80887414
Q gi|254780762|r  142 LIFAISATIEGQTTAHYIMDKLKGID-VKITRLAY  175 (201)
Q Consensus       142 VIlA~~~t~EGe~Ta~yi~~~lk~~~-ikitrla~  175 (201)
T Consensus        80 v~lAtD~DREGE~I~~~i~~~l~~~~~~~~~R~~F  114 (570)
T COG0550          80 VYLATDPDREGEAIGWHILEVLKLKNPSKVKRVVF  114 (570)
T ss_pred             EEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf             99898999530799999999847567774137998