HHsearch alignment for GI: 254780762 and conserved domain: COG1658
>COG1658 Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair].
Probab=95.77 E-value=0.063 Score=34.42 Aligned_cols=107 Identities=19% Similarity=0.213 Sum_probs=81.7
Q ss_pred CCEEEEEECHHHHHHHHHHCCEEEEEEEHHHHCCCCCCCCHHHCCHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHH
Q ss_conf 73699983588999997517401342101210020002681112889999985157855499994699786899999999
Q gi|254780762|r 82 ASVIIVVEDVADLWALERSKAVNALYHVLGGSLSPLDRIGPEDIGIQSLIERIEVKKIRELIFAISATIEGQTTAHYIMD 161 (201)
Q Consensus 82 ~~~lCVVE~~~Di~~IE~t~~y~G~YhVLgG~ispl~g~~p~~l~i~~L~~ri~~~~i~EVIlA~~~t~EGe~Ta~yi~~ 161 (201)
T Consensus 9 ~~~vIVVEGK~D~~~l~~~~-~~~~i~~~g~~i~~~~--------~ie~i~~--~~~~k~VIILTD~D~~Ge~Irk~l~~ 77 (127)
T COG1658 9 LKEVIVVEGKDDTASLKRLG-DAGVIITNGSAINSLE--------TIELIKK--AQKYKGVIILTDPDRKGERIRKKLKE 77 (127)
T ss_pred CCCEEEEECCCHHHHHHHHC-CCCEEEECCCCCCHHH--------HHHHHHH--HHCCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 49669996776799999854-6863897586542788--------9999998--64258779986898562899999999
Q ss_pred HHCC-CCCEEEEEEC---CCCC-CCCHHHHHHHHHHHHHHCCC
Q ss_conf 8201-7980887414---6748-82066634799999983064
Q gi|254780762|r 162 KLKG-IDVKITRLAY---GIPM-GSELDYLDDGTIFEAIRSRT 199 (201)
Q Consensus 162 ~lk~-~~ikitrla~---GiP~-G~~ley~D~~TL~~Al~~R~ 199 (201)
T Consensus 78 ~l~~~~~~~id~~~~~~~~~~~~i~gVE~~~~~~~~~~l~~~~ 120 (127)
T COG1658 78 YLPGAKGAFIDREIRNKLKINGKIIGVEEASSEALRKALKEVP 120 (127)
T ss_pred HCCCCCCCCCCHHHHHHCCCCCCCCCCEECCHHHHHHHHHHCC
T ss_conf 7152546541489851303675523611078488999997467