HHsearch alignment for GI: 254780762 and conserved domain: PRK06319
>PRK06319 DNA topoisomerase I/SWI domain fusion protein; Validated.
Probab=95.98 E-value=0.075 Score=33.87 Aligned_cols=104 Identities=22% Similarity=0.343 Sum_probs=63.1
Q ss_pred CEEEEEECHHHHHHHHHHCCEEE-EEEEHH--HHCCCC---C-CCCHHH-C------------CHHHHHHHHCCCCCCEE
Q ss_conf 36999835889999975174013-421012--100200---0-268111-2------------88999998515785549
Q gi|254780762|r 83 SVIIVVEDVADLWALERSKAVNA-LYHVLG--GSLSPL---D-RIGPED-I------------GIQSLIERIEVKKIREL 142 (201)
Q Consensus 83 ~~lCVVE~~~Di~~IE~t~~y~G-~YhVLg--G~ispl---~-g~~p~~-l------------~i~~L~~ri~~~~i~EV 142 (201)
T Consensus 3 K~LVIVESPaKAktI~k~---LG~~y~V~as~GHirdLp~~~~gvd~~~~f~p~y~~~~~k~k~i~~Lkkla--k~ad~V 77 (864)
T PRK06319 3 KSLIIVESPAKIKTLQKL---LGEGFIFASSLGHIVDLPAKEFGIDIENDFEPDYQILPDKQEVIRKICKLA--KKCDVV 77 (864)
T ss_pred CCEEEECCHHHHHHHHHH---CCCCCEEEECCCCHHCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHH--HCCCEE
T ss_conf 738998480889999997---398979995157031089855684757798641167877689999999998--469979
Q ss_pred EEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 9994699786899999999820179808874146748820666347999999830647
Q gi|254780762|r 143 IFAISATIEGQTTAHYIMDKLKGIDVKITRLAYGIPMGSELDYLDDGTIFEAIRSRTV 200 (201)
Q Consensus 143 IlA~~~t~EGe~Ta~yi~~~lk~~~ikitrla~GiP~G~~ley~D~~TL~~Al~~R~~ 200 (201)
T Consensus 78 ~lATDpDREGEaIawhi~~~l~~-~~~vkRi~F~--------EITk~AI~~Al~npr~ 126 (864)
T PRK06319 78 YLSPDPDREGEAIAWHIANQLPK-NTKIQRVSFN--------AITKGAVTEALKHPRE 126 (864)
T ss_pred EECCCCCCCHHHHHHHHHHHCCC-CCCCEEEEEE--------CCCHHHHHHHHHCCCC
T ss_conf 98988971527999999997389-9982589993--------6799999999968520