HHsearch alignment for GI: 254780762 and conserved domain: PRK06319

>PRK06319 DNA topoisomerase I/SWI domain fusion protein; Validated.
Probab=95.98  E-value=0.075  Score=33.87  Aligned_cols=104  Identities=22%  Similarity=0.343  Sum_probs=63.1

Q ss_pred             CEEEEEECHHHHHHHHHHCCEEE-EEEEHH--HHCCCC---C-CCCHHH-C------------CHHHHHHHHCCCCCCEE
Q ss_conf             36999835889999975174013-421012--100200---0-268111-2------------88999998515785549
Q gi|254780762|r   83 SVIIVVEDVADLWALERSKAVNA-LYHVLG--GSLSPL---D-RIGPED-I------------GIQSLIERIEVKKIREL  142 (201)
Q Consensus        83 ~~lCVVE~~~Di~~IE~t~~y~G-~YhVLg--G~ispl---~-g~~p~~-l------------~i~~L~~ri~~~~i~EV  142 (201)
T Consensus         3 K~LVIVESPaKAktI~k~---LG~~y~V~as~GHirdLp~~~~gvd~~~~f~p~y~~~~~k~k~i~~Lkkla--k~ad~V   77 (864)
T PRK06319          3 KSLIIVESPAKIKTLQKL---LGEGFIFASSLGHIVDLPAKEFGIDIENDFEPDYQILPDKQEVIRKICKLA--KKCDVV   77 (864)
T ss_pred             CCEEEECCHHHHHHHHHH---CCCCCEEEECCCCHHCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHH--HCCCEE
T ss_conf             738998480889999997---398979995157031089855684757798641167877689999999998--469979


Q ss_pred             EEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf             9994699786899999999820179808874146748820666347999999830647
Q gi|254780762|r  143 IFAISATIEGQTTAHYIMDKLKGIDVKITRLAYGIPMGSELDYLDDGTIFEAIRSRTV  200 (201)
Q Consensus       143 IlA~~~t~EGe~Ta~yi~~~lk~~~ikitrla~GiP~G~~ley~D~~TL~~Al~~R~~  200 (201)
T Consensus        78 ~lATDpDREGEaIawhi~~~l~~-~~~vkRi~F~--------EITk~AI~~Al~npr~  126 (864)
T PRK06319         78 YLSPDPDREGEAIAWHIANQLPK-NTKIQRVSFN--------AITKGAVTEALKHPRE  126 (864)
T ss_pred             EECCCCCCCHHHHHHHHHHHCCC-CCCCEEEEEE--------CCCHHHHHHHHHCCCC
T ss_conf             98988971527999999997389-9982589993--------6799999999968520