HHsearch alignment for GI: 254780762 and conserved domain: PRK06599

>PRK06599 DNA topoisomerase I; Validated.
Probab=95.95  E-value=0.083  Score=33.58  Aligned_cols=104  Identities=16%  Similarity=0.336  Sum_probs=61.3

Q ss_pred             EEEEEECHHHHHHHHHHCCEEEEEEEHH--HHCCCCC----CCCHHH-C------------CHHHHHHHHCCCCCCEEEE
Q ss_conf             6999835889999975174013421012--1002000----268111-2------------8899999851578554999
Q gi|254780762|r   84 VIIVVEDVADLWALERSKAVNALYHVLG--GSLSPLD----RIGPED-I------------GIQSLIERIEVKKIRELIF  144 (201)
Q Consensus        84 ~lCVVE~~~Di~~IE~t~~y~G~YhVLg--G~ispl~----g~~p~~-l------------~i~~L~~ri~~~~i~EVIl  144 (201)
T Consensus         2 kLvIvESPsKaktI~k~L--G~~y~V~as~GHi~dLp~~~~~v~~~~~f~~~y~~~~~~~k~i~~lk~l~--k~ad~V~l   77 (776)
T PRK06599          2 KLVIVESPAKAKTINKYL--GDEFKVIASFGHIRDLPSKKGSVLPDENFAMKYDISDKAGKYVDAIVKDA--KKAEAVYL   77 (776)
T ss_pred             EEEEECCHHHHHHHHHHC--CCCCEEEEECCCHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH--HCCCEEEE
T ss_conf             099981738999999970--95979997137375467654886767787346798976788999999998--47998998


Q ss_pred             EECCCCCHHHHHHHHHHHHCCCC-----CEEEEEECCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf             94699786899999999820179-----80887414674882066634799999983064
Q gi|254780762|r  145 AISATIEGQTTAHYIMDKLKGID-----VKITRLAYGIPMGSELDYLDDGTIFEAIRSRT  199 (201)
Q Consensus       145 A~~~t~EGe~Ta~yi~~~lk~~~-----ikitrla~GiP~G~~ley~D~~TL~~Al~~R~  199 (201)
T Consensus        78 ATDpDREGEaIawhi~e~l~~~~~~~~~~~~kRi~f~--------eITk~AI~~Al~npr  129 (776)
T PRK06599         78 ATDPDREGESISWHVAEVIKEKNKVKSDDFFKRVAFN--------EITKKAIIHAVENPR  129 (776)
T ss_pred             CCCCCCCHHHHHHHHHHHHCHHCCCCCCCCEEEEEEE--------CCCHHHHHHHHHCCH
T ss_conf             9899704369999999985600467677760389993--------389999999995932