HHsearch alignment for GI: 254780762 and conserved domain: PRK06599
>PRK06599 DNA topoisomerase I; Validated.
Probab=95.95 E-value=0.083 Score=33.58 Aligned_cols=104 Identities=16% Similarity=0.336 Sum_probs=61.3
Q ss_pred EEEEEECHHHHHHHHHHCCEEEEEEEHH--HHCCCCC----CCCHHH-C------------CHHHHHHHHCCCCCCEEEE
Q ss_conf 6999835889999975174013421012--1002000----268111-2------------8899999851578554999
Q gi|254780762|r 84 VIIVVEDVADLWALERSKAVNALYHVLG--GSLSPLD----RIGPED-I------------GIQSLIERIEVKKIRELIF 144 (201)
Q Consensus 84 ~lCVVE~~~Di~~IE~t~~y~G~YhVLg--G~ispl~----g~~p~~-l------------~i~~L~~ri~~~~i~EVIl 144 (201)
T Consensus 2 kLvIvESPsKaktI~k~L--G~~y~V~as~GHi~dLp~~~~~v~~~~~f~~~y~~~~~~~k~i~~lk~l~--k~ad~V~l 77 (776)
T PRK06599 2 KLVIVESPAKAKTINKYL--GDEFKVIASFGHIRDLPSKKGSVLPDENFAMKYDISDKAGKYVDAIVKDA--KKAEAVYL 77 (776)
T ss_pred EEEEECCHHHHHHHHHHC--CCCCEEEEECCCHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH--HCCCEEEE
T ss_conf 099981738999999970--95979997137375467654886767787346798976788999999998--47998998
Q ss_pred EECCCCCHHHHHHHHHHHHCCCC-----CEEEEEECCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 94699786899999999820179-----80887414674882066634799999983064
Q gi|254780762|r 145 AISATIEGQTTAHYIMDKLKGID-----VKITRLAYGIPMGSELDYLDDGTIFEAIRSRT 199 (201)
Q Consensus 145 A~~~t~EGe~Ta~yi~~~lk~~~-----ikitrla~GiP~G~~ley~D~~TL~~Al~~R~ 199 (201)
T Consensus 78 ATDpDREGEaIawhi~e~l~~~~~~~~~~~~kRi~f~--------eITk~AI~~Al~npr 129 (776)
T PRK06599 78 ATDPDREGESISWHVAEVIKEKNKVKSDDFFKRVAFN--------EITKKAIIHAVENPR 129 (776)
T ss_pred CCCCCCCHHHHHHHHHHHHCHHCCCCCCCCEEEEEEE--------CCCHHHHHHHHHCCH
T ss_conf 9899704369999999985600467677760389993--------389999999995932