HHsearch alignment for GI: 254780762 and conserved domain: cd01025

>cd01025 TOPRIM_recR TOPRIM_recR: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in Escherichia coli RecR. RecR participates in the RecFOR pathway of homologous recombinational repair in prokaryotes. This pathway provides a single-stranded DNA molecule coated with RecA to allow invasion of a homologous molecule. The RecFOR system directs the loading of RecA onto gapped DNA coated with SSB protein. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). In RecR sequences this glutamate in the first turn of the TOPRIM domain is semiconserved, the DXD motif is not conserved.
Probab=100.00  E-value=3.1e-44  Score=318.90  Aligned_cols=112  Identities=49%  Similarity=0.798  Sum_probs=110.5

Q ss_pred             CEEEEEECHHHHHHHHHHCCEEEEEEEHHHHCCCCCCCCHHHCCHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHH
Q ss_conf             36999835889999975174013421012100200026811128899999851578554999946997868999999998
Q gi|254780762|r   83 SVIIVVEDVADLWALERSKAVNALYHVLGGSLSPLDRIGPEDIGIQSLIERIEVKKIRELIFAISATIEGQTTAHYIMDK  162 (201)
Q Consensus        83 ~~lCVVE~~~Di~~IE~t~~y~G~YhVLgG~ispl~g~~p~~l~i~~L~~ri~~~~i~EVIlA~~~t~EGe~Ta~yi~~~  162 (201)
T Consensus         1 n~lcVVe~~~Dl~~iE~s~~y~G~YhVL~G~lspl~g~~p~~l~i~~L~~ri~~~~i~EvIlA~~~t~EGe~Ta~yi~~~   80 (112)
T cd01025           1 NKLCVVEEPRDVLAIEESGEYRGLYHVLGGLISPLDGIGPDDLNIDKLLERIAKGQVKEVILATNPTVEGEATALYIAKL   80 (112)
T ss_pred             CEEEEECCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHH
T ss_conf             97999898999999972175656999852634755699833031999999983589418999748996608999999998


Q ss_pred             HCCCCCEEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf             20179808874146748820666347999999
Q gi|254780762|r  163 LKGIDVKITRLAYGIPMGSELDYLDDGTIFEA  194 (201)
Q Consensus       163 lk~~~ikitrla~GiP~G~~ley~D~~TL~~A  194 (201)
T Consensus        81 l~~~~ikitrLA~GiP~G~~ley~D~~TL~~A  112 (112)
T cd01025          81 LKDFGVKVTRLAQGIPVGGELEYADEITLSRA  112 (112)
T ss_pred             HHHCCCCEEEEEECCCCCCCEEECCHHHHHCC
T ss_conf             54359727988744766874233578678529